Query 000227
Match_columns 1826
No_of_seqs 594 out of 3508
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 00:20:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1070 rRNA processing protei 100.0 5E-185 1E-189 1718.3 86.4 1519 43-1809 27-1579(1710)
2 KOG1070 rRNA processing protei 100.0 3E-102 6E-107 974.3 68.2 1436 121-1810 144-1687(1710)
3 COG0539 RpsA Ribosomal protein 100.0 8.9E-63 1.9E-67 600.0 41.8 491 314-835 14-516 (541)
4 COG0539 RpsA Ribosomal protein 100.0 9.8E-60 2.1E-64 573.4 44.9 496 402-945 16-518 (541)
5 PRK12269 bifunctional cytidyla 100.0 1.1E-55 2.4E-60 575.4 47.2 494 313-835 313-829 (863)
6 PRK06299 rpsA 30S ribosomal pr 100.0 9.2E-55 2E-59 564.1 53.2 508 966-1543 26-534 (565)
7 PRK12269 bifunctional cytidyla 100.0 1.1E-54 2.4E-59 566.0 52.8 506 964-1541 315-827 (863)
8 PRK06299 rpsA 30S ribosomal pr 100.0 1.4E-54 3E-59 562.5 47.0 496 317-835 26-534 (565)
9 TIGR00717 rpsA ribosomal prote 100.0 1.3E-54 2.8E-59 558.4 45.1 490 317-831 14-516 (516)
10 TIGR00717 rpsA ribosomal prote 100.0 1.6E-53 3.5E-58 548.2 51.2 501 967-1539 15-516 (516)
11 PRK13806 rpsA 30S ribosomal pr 100.0 2.1E-50 4.5E-55 509.1 44.6 419 1059-1541 30-451 (491)
12 PRK13806 rpsA 30S ribosomal pr 100.0 4.9E-48 1.1E-52 487.5 40.7 411 404-833 31-451 (491)
13 PRK07899 rpsA 30S ribosomal pr 100.0 2.3E-43 4.9E-48 436.8 36.7 333 1161-1541 33-365 (486)
14 PRK07899 rpsA 30S ribosomal pr 100.0 2.9E-42 6.3E-47 426.9 33.7 328 493-835 30-367 (486)
15 PRK06676 rpsA 30S ribosomal pr 100.0 2.3E-40 5.1E-45 411.1 34.8 335 487-835 6-351 (390)
16 PRK06676 rpsA 30S ribosomal pr 100.0 5.8E-40 1.2E-44 407.6 36.5 336 1161-1543 15-351 (390)
17 PRK00087 4-hydroxy-3-methylbut 100.0 8.2E-38 1.8E-42 407.6 36.1 335 1161-1542 300-635 (647)
18 PRK00087 4-hydroxy-3-methylbut 100.0 6E-37 1.3E-41 399.5 32.7 332 490-835 294-636 (647)
19 PRK07400 30S ribosomal protein 100.0 3.4E-32 7.4E-37 324.0 28.0 242 1257-1545 29-271 (318)
20 PRK07400 30S ribosomal protein 100.0 3E-31 6.6E-36 315.9 26.1 237 583-835 29-269 (318)
21 KOG1915 Cell cycle control pro 99.7 2.7E-17 5.8E-22 191.6 14.2 139 1666-1812 87-225 (677)
22 KOG0495 HAT repeat protein [RN 99.7 2.7E-16 5.9E-21 189.1 13.5 146 1656-1809 588-734 (913)
23 PTZ00248 eukaryotic translatio 99.6 7.8E-16 1.7E-20 179.6 2.0 147 1374-1525 12-171 (319)
24 COG1098 VacB Predicted RNA bin 99.5 4.9E-15 1.1E-19 145.2 6.1 75 1465-1541 2-76 (129)
25 KOG1915 Cell cycle control pro 99.5 3.5E-13 7.7E-18 157.7 13.5 139 1665-1806 379-552 (677)
26 COG2996 Predicted RNA-bindinin 99.4 9.6E-12 2.1E-16 138.4 22.6 213 1257-1543 3-220 (287)
27 KOG0495 HAT repeat protein [RN 99.4 1.2E-12 2.6E-17 158.3 14.6 133 1672-1811 570-702 (913)
28 cd05705 S1_Rrp5_repeat_hs14 S1 99.4 5.6E-13 1.2E-17 125.2 9.0 71 1376-1446 1-74 (74)
29 COG1098 VacB Predicted RNA bin 99.4 2.5E-13 5.5E-18 133.3 5.7 77 758-835 2-78 (129)
30 cd05705 S1_Rrp5_repeat_hs14 S1 99.4 1.2E-12 2.5E-17 123.1 8.8 71 1466-1537 1-74 (74)
31 PTZ00248 eukaryotic translatio 99.4 1.3E-12 2.8E-17 152.9 10.3 109 758-893 13-125 (319)
32 COG2996 Predicted RNA-bindinin 99.4 7.3E-11 1.6E-15 131.5 23.4 231 583-850 3-237 (287)
33 cd05694 S1_Rrp5_repeat_hs2_sc2 99.4 2.1E-12 4.6E-17 121.2 9.5 71 229-301 1-71 (74)
34 cd05693 S1_Rrp5_repeat_hs1_sc1 99.4 1.5E-12 3.3E-17 129.4 8.6 90 131-222 1-100 (100)
35 cd05694 S1_Rrp5_repeat_hs2_sc2 99.3 5.1E-12 1.1E-16 118.6 9.8 71 758-834 1-72 (74)
36 cd05703 S1_Rrp5_repeat_hs12_sc 99.3 5.4E-12 1.2E-16 118.4 9.3 70 1469-1539 1-72 (73)
37 cd05703 S1_Rrp5_repeat_hs12_sc 99.3 5E-12 1.1E-16 118.6 9.0 70 1379-1448 1-72 (73)
38 cd04461 S1_Rrp5_repeat_hs8_sc7 99.3 1.1E-11 2.3E-16 119.9 8.4 79 752-830 5-83 (83)
39 PF05843 Suf: Suppressor of fo 99.3 1.7E-11 3.7E-16 145.9 11.6 116 1687-1808 2-121 (280)
40 cd05686 S1_pNO40 S1_pNO40: pNO 99.2 2.7E-11 5.9E-16 113.9 9.6 71 1467-1538 2-72 (73)
41 cd05704 S1_Rrp5_repeat_hs13 S1 99.2 2.1E-11 4.6E-16 114.2 8.5 71 1466-1539 1-72 (72)
42 cd05698 S1_Rrp5_repeat_hs6_sc5 99.2 2.6E-11 5.6E-16 113.2 8.6 70 762-831 1-70 (70)
43 cd05708 S1_Rrp5_repeat_sc12 S1 99.2 4.2E-11 9E-16 113.9 10.2 77 1467-1543 1-77 (77)
44 cd05706 S1_Rrp5_repeat_sc10 S1 99.2 7E-11 1.5E-15 111.2 10.6 73 1376-1448 1-73 (73)
45 PF00575 S1: S1 RNA binding do 99.2 5.9E-11 1.3E-15 112.0 10.2 73 759-831 2-74 (74)
46 cd05706 S1_Rrp5_repeat_sc10 S1 99.2 7E-11 1.5E-15 111.2 10.2 73 1466-1539 1-73 (73)
47 cd05696 S1_Rrp5_repeat_hs4 S1_ 99.2 5.1E-11 1.1E-15 111.3 8.9 69 1469-1538 1-71 (71)
48 cd04461 S1_Rrp5_repeat_hs8_sc7 99.2 4.6E-11 1E-15 115.4 9.0 78 1370-1447 6-83 (83)
49 PF00575 S1: S1 RNA binding do 99.2 6.9E-11 1.5E-15 111.5 9.8 73 1376-1448 2-74 (74)
50 cd05698 S1_Rrp5_repeat_hs6_sc5 99.2 5.7E-11 1.2E-15 110.9 8.9 70 1469-1539 1-70 (70)
51 cd05704 S1_Rrp5_repeat_hs13 S1 99.2 5.2E-11 1.1E-15 111.5 8.6 71 1376-1448 1-72 (72)
52 cd05697 S1_Rrp5_repeat_hs5 S1_ 99.2 8.8E-11 1.9E-15 109.2 9.2 69 1469-1538 1-69 (69)
53 PRK08582 hypothetical protein; 99.2 1.1E-10 2.5E-15 122.9 10.1 75 1465-1541 2-76 (139)
54 PRK08582 hypothetical protein; 99.1 2E-10 4.3E-15 121.1 11.0 80 1376-1456 3-82 (139)
55 cd05707 S1_Rrp5_repeat_sc11 S1 99.1 1E-10 2.2E-15 108.5 7.9 68 762-829 1-68 (68)
56 cd05697 S1_Rrp5_repeat_hs5 S1_ 99.1 1.6E-10 3.4E-15 107.6 8.9 69 1379-1447 1-69 (69)
57 cd05707 S1_Rrp5_repeat_sc11 S1 99.1 1.5E-10 3.3E-15 107.3 8.4 68 1469-1537 1-68 (68)
58 cd04452 S1_IF2_alpha S1_IF2_al 99.1 2.8E-10 6.1E-15 108.0 10.3 74 1467-1540 2-76 (76)
59 cd05696 S1_Rrp5_repeat_hs4 S1_ 99.1 1.8E-10 4E-15 107.6 8.6 69 762-830 1-71 (71)
60 cd05693 S1_Rrp5_repeat_hs1_sc1 99.1 9.2E-11 2E-15 116.7 6.8 77 1376-1452 1-99 (100)
61 cd05690 S1_RPS1_repeat_ec5 S1_ 99.1 2.3E-10 4.9E-15 106.4 8.4 68 1469-1537 1-69 (69)
62 PRK07252 hypothetical protein; 99.1 4.2E-10 9.1E-15 115.4 10.5 74 1467-1541 2-75 (120)
63 PRK05807 hypothetical protein; 99.1 5.3E-10 1.1E-14 117.5 10.3 74 1465-1541 2-75 (136)
64 PRK07252 hypothetical protein; 99.1 6.4E-10 1.4E-14 114.1 10.2 76 760-835 2-77 (120)
65 PF05843 Suf: Suppressor of fo 99.1 9.2E-10 2E-14 131.2 13.2 128 1670-1804 19-151 (280)
66 cd05691 S1_RPS1_repeat_ec6 S1_ 99.0 7.1E-10 1.5E-14 104.3 9.5 71 1469-1540 1-71 (73)
67 cd05699 S1_Rrp5_repeat_hs7 S1_ 99.0 3.8E-10 8.3E-15 102.6 7.1 72 670-742 1-72 (72)
68 cd05689 S1_RPS1_repeat_ec4 S1_ 99.0 7.3E-10 1.6E-14 104.0 9.0 71 1466-1537 1-72 (72)
69 cd05690 S1_RPS1_repeat_ec5 S1_ 99.0 5E-10 1.1E-14 104.2 7.8 68 762-829 1-69 (69)
70 cd05708 S1_Rrp5_repeat_sc12 S1 99.0 7.9E-10 1.7E-14 105.1 9.3 74 760-833 1-75 (77)
71 cd04452 S1_IF2_alpha S1_IF2_al 99.0 1E-09 2.3E-14 104.1 9.8 73 760-832 2-76 (76)
72 cd05691 S1_RPS1_repeat_ec6 S1_ 99.0 1.2E-09 2.5E-14 102.8 9.7 72 1379-1450 1-72 (73)
73 cd05695 S1_Rrp5_repeat_hs3 S1_ 99.0 9.8E-10 2.1E-14 101.1 8.6 66 1469-1537 1-66 (66)
74 cd05684 S1_DHX8_helicase S1_DH 99.0 1.9E-09 4E-14 103.2 10.0 71 1469-1541 1-74 (79)
75 cd05686 S1_pNO40 S1_pNO40: pNO 99.0 1.8E-09 3.8E-14 101.6 9.5 70 760-830 2-72 (73)
76 cd05687 S1_RPS1_repeat_ec1_hs1 99.0 1.8E-09 3.8E-14 100.8 9.3 70 1469-1539 1-70 (70)
77 cd05689 S1_RPS1_repeat_ec4 S1_ 99.0 1.5E-09 3.2E-14 102.0 8.7 71 759-829 1-72 (72)
78 cd05687 S1_RPS1_repeat_ec1_hs1 99.0 2.2E-09 4.9E-14 100.1 9.4 70 1379-1448 1-70 (70)
79 PRK08059 general stress protei 99.0 2.2E-09 4.7E-14 111.4 10.2 78 1463-1541 2-79 (123)
80 cd05695 S1_Rrp5_repeat_hs3 S1_ 99.0 1.6E-09 3.4E-14 99.7 8.0 66 762-829 1-66 (66)
81 cd05692 S1_RPS1_repeat_hs4 S1_ 98.9 2.7E-09 5.9E-14 98.9 9.0 69 1469-1539 1-69 (69)
82 PRK05807 hypothetical protein; 98.9 3.8E-09 8.2E-14 111.1 10.9 74 1376-1451 3-76 (136)
83 PRK08059 general stress protei 98.9 4.1E-09 9E-14 109.4 11.0 81 1374-1454 3-83 (123)
84 PHA02945 interferon resistance 98.9 3.7E-09 8E-14 98.7 8.9 73 1466-1541 9-84 (88)
85 cd05685 S1_Tex S1_Tex: The C-t 98.9 2.7E-09 6E-14 98.6 8.3 68 1469-1537 1-68 (68)
86 cd04465 S1_RPS1_repeat_ec2_hs2 98.9 7.5E-09 1.6E-13 95.7 8.7 67 762-831 1-67 (67)
87 cd05692 S1_RPS1_repeat_hs4 S1_ 98.9 8.9E-09 1.9E-13 95.4 8.9 69 1379-1448 1-69 (69)
88 cd05685 S1_Tex S1_Tex: The C-t 98.8 6.7E-09 1.4E-13 96.0 7.6 68 762-829 1-68 (68)
89 cd04465 S1_RPS1_repeat_ec2_hs2 98.8 1.1E-08 2.4E-13 94.6 8.9 67 586-655 1-67 (67)
90 TIGR02696 pppGpp_PNP guanosine 98.8 6.1E-09 1.3E-13 133.7 9.6 71 1465-1537 644-718 (719)
91 COG1093 SUI2 Translation initi 98.8 3.6E-09 7.7E-14 117.8 6.4 74 1467-1540 10-84 (269)
92 cd05688 S1_RPS1_repeat_ec3 S1_ 98.8 1.3E-08 2.9E-13 94.1 8.9 68 1468-1537 1-68 (68)
93 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 98.8 1.1E-08 2.3E-13 99.7 8.5 76 1466-1543 4-83 (86)
94 cd05684 S1_DHX8_helicase S1_DH 98.8 1.8E-08 4E-13 96.3 10.1 73 1379-1453 1-77 (79)
95 PLN00207 polyribonucleotide nu 98.8 7.2E-09 1.6E-13 135.7 9.2 78 1464-1543 749-827 (891)
96 cd04472 S1_PNPase S1_PNPase: P 98.8 1.5E-08 3.2E-13 93.8 8.7 68 1469-1538 1-68 (68)
97 cd04471 S1_RNase_R S1_RNase_R: 98.8 2.3E-08 5E-13 96.5 9.7 71 1468-1538 1-82 (83)
98 smart00316 S1 Ribosomal protei 98.8 2.5E-08 5.5E-13 92.8 9.0 72 1377-1448 1-72 (72)
99 PRK03987 translation initiatio 98.8 2E-08 4.3E-13 116.9 9.9 76 1466-1541 6-82 (262)
100 cd04453 S1_RNase_E S1_RNase_E: 98.8 2.5E-08 5.3E-13 97.1 8.9 76 1465-1541 4-84 (88)
101 smart00316 S1 Ribosomal protei 98.8 3.1E-08 6.7E-13 92.2 9.4 72 1467-1539 1-72 (72)
102 cd04472 S1_PNPase S1_PNPase: P 98.8 2.7E-08 5.8E-13 92.1 8.7 68 762-830 1-68 (68)
103 PHA02945 interferon resistance 98.7 3.4E-08 7.4E-13 92.4 8.8 72 1377-1451 10-85 (88)
104 cd04473 S1_RecJ_like S1_RecJ_l 98.7 5.6E-08 1.2E-12 92.5 9.8 67 1462-1538 10-76 (77)
105 cd05688 S1_RPS1_repeat_ec3 S1_ 98.7 3.8E-08 8.2E-13 91.1 8.5 68 1378-1446 1-68 (68)
106 COG2183 Tex Transcriptional ac 98.7 1.8E-08 3.9E-13 128.0 7.5 86 1368-1453 648-733 (780)
107 PLN00207 polyribonucleotide nu 98.7 2.8E-08 6.1E-13 130.2 9.1 83 1375-1458 750-833 (891)
108 COG2183 Tex Transcriptional ac 98.7 2E-08 4.4E-13 127.4 7.5 78 1462-1540 652-729 (780)
109 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 98.7 5.3E-08 1.1E-12 94.8 8.4 75 1376-1451 4-82 (86)
110 PRK09521 exosome complex RNA-b 98.6 1.3E-07 2.9E-12 105.8 11.6 94 1434-1541 41-143 (189)
111 cd05702 S1_Rrp5_repeat_hs11_sc 98.6 8E-08 1.7E-12 89.7 8.0 63 1469-1532 1-65 (70)
112 COG1185 Pnp Polyribonucleotide 98.6 4.2E-08 9E-13 122.7 7.4 104 1434-1540 585-689 (692)
113 cd04471 S1_RNase_R S1_RNase_R: 98.6 1.5E-07 3.3E-12 90.8 9.7 70 1378-1447 1-82 (83)
114 cd04454 S1_Rrp4_like S1_Rrp4_l 98.6 1.2E-07 2.7E-12 91.3 9.0 74 1466-1541 4-77 (82)
115 PRK11824 polynucleotide phosph 98.6 9.6E-08 2.1E-12 126.2 9.9 76 1464-1541 617-692 (693)
116 cd05702 S1_Rrp5_repeat_hs11_sc 98.6 1.4E-07 3E-12 88.1 8.1 62 1379-1440 1-64 (70)
117 cd04454 S1_Rrp4_like S1_Rrp4_l 98.6 1.9E-07 4.2E-12 90.0 8.9 74 1377-1451 5-78 (82)
118 cd04453 S1_RNase_E S1_RNase_E: 98.6 2.1E-07 4.5E-12 90.7 8.9 75 1375-1449 4-83 (88)
119 PRK03987 translation initiatio 98.6 1.8E-07 3.8E-12 109.0 10.1 77 1377-1453 7-85 (262)
120 cd04473 S1_RecJ_like S1_RecJ_l 98.6 3.7E-07 8.1E-12 86.8 10.3 67 755-830 10-76 (77)
121 TIGR02696 pppGpp_PNP guanosine 98.6 1.1E-07 2.4E-12 122.3 8.6 71 758-829 644-718 (719)
122 COG1093 SUI2 Translation initi 98.5 6E-08 1.3E-12 108.2 4.8 77 1377-1453 10-88 (269)
123 cd00164 S1_like S1_like: Ribos 98.5 2E-07 4.4E-12 84.9 7.1 65 1382-1446 1-65 (65)
124 KOG2047 mRNA splicing factor [ 98.5 9.2E-07 2E-11 108.5 14.4 143 1661-1806 396-559 (835)
125 KOG2047 mRNA splicing factor [ 98.5 5.7E-07 1.2E-11 110.3 12.2 121 1685-1807 386-524 (835)
126 cd00164 S1_like S1_like: Ribos 98.5 2.7E-07 5.9E-12 84.0 6.7 65 765-829 1-65 (65)
127 cd04460 S1_RpoE S1_RpoE: RpoE, 98.5 5.4E-07 1.2E-11 90.2 8.9 74 1470-1545 1-90 (99)
128 PRK11824 polynucleotide phosph 98.4 8.3E-07 1.8E-11 117.5 10.7 76 1374-1450 617-692 (693)
129 PRK09521 exosome complex RNA-b 98.4 2.1E-06 4.6E-11 96.3 12.0 74 1374-1450 60-143 (189)
130 TIGR03591 polynuc_phos polyrib 98.4 5.1E-07 1.1E-11 119.1 7.8 71 1464-1536 614-684 (684)
131 PRK04163 exosome complex RNA-b 98.2 7.1E-06 1.5E-10 94.9 12.1 78 1465-1544 60-141 (235)
132 cd04460 S1_RpoE S1_RpoE: RpoE, 98.2 4.7E-06 1E-10 83.5 9.1 76 1380-1456 1-92 (99)
133 PRK04163 exosome complex RNA-b 98.2 6.8E-06 1.5E-10 95.1 10.9 73 1376-1449 61-137 (235)
134 TIGR00990 3a0801s09 mitochondr 98.2 1.8E-05 3.9E-10 105.5 16.4 138 1665-1809 344-482 (615)
135 TIGR03591 polynuc_phos polyrib 98.2 2.4E-06 5.3E-11 112.8 7.8 71 757-828 614-684 (684)
136 TIGR02521 type_IV_pilW type IV 98.2 5.4E-05 1.2E-09 86.3 18.1 135 1669-1808 82-217 (234)
137 PF13429 TPR_15: Tetratricopep 98.2 9.7E-06 2.1E-10 97.1 12.1 137 1668-1811 126-265 (280)
138 PRK09202 nusA transcription el 98.1 3.5E-06 7.6E-11 105.7 6.5 108 542-656 86-200 (470)
139 cd04455 S1_NusA S1_NusA: N-uti 98.1 1.7E-05 3.7E-10 73.4 9.3 63 1377-1446 2-66 (67)
140 cd05699 S1_Rrp5_repeat_hs7 S1_ 98.1 1.1E-05 2.3E-10 74.0 7.6 62 875-939 1-72 (72)
141 TIGR00448 rpoE DNA-directed RN 98.1 1.5E-05 3.2E-10 88.7 10.1 78 1467-1546 80-173 (179)
142 PRK09202 nusA transcription el 98.1 4.1E-06 8.9E-11 105.1 6.2 120 717-850 86-211 (470)
143 cd04455 S1_NusA S1_NusA: N-uti 98.1 1.4E-05 3.1E-10 73.8 8.2 63 760-829 2-66 (67)
144 TIGR02063 RNase_R ribonuclease 98.1 9.9E-06 2.1E-10 108.7 10.1 76 1463-1538 622-708 (709)
145 TIGR02521 type_IV_pilW type IV 98.0 0.00011 2.4E-09 83.8 16.6 138 1665-1809 44-184 (234)
146 COG1185 Pnp Polyribonucleotide 98.0 6.9E-06 1.5E-10 103.4 6.9 76 757-833 615-690 (692)
147 COG1095 RPB7 DNA-directed RNA 98.0 1.4E-05 3E-10 86.0 7.9 77 1467-1545 80-172 (183)
148 KOG1258 mRNA processing protei 98.0 6.1E-05 1.3E-09 93.9 14.4 128 1672-1806 65-198 (577)
149 PRK11642 exoribonuclease R; Pr 98.0 2E-05 4.3E-10 105.8 9.9 75 1465-1539 640-725 (813)
150 PF13429 TPR_15: Tetratricopep 97.9 2.4E-05 5.2E-10 93.7 9.1 136 1668-1809 93-229 (280)
151 COG3063 PilF Tfp pilus assembl 97.9 0.00024 5.2E-09 79.2 15.3 140 1663-1809 46-188 (250)
152 PF08424 NRDE-2: NRDE-2, neces 97.9 0.00022 4.9E-09 86.9 16.8 135 1672-1813 5-173 (321)
153 PRK11788 tetratricopeptide rep 97.8 0.00034 7.4E-09 87.7 18.1 143 1663-1808 46-194 (389)
154 cd05791 S1_CSL4 S1_CSL4: CSL4, 97.8 4.7E-05 1E-09 74.9 7.9 74 1466-1540 4-86 (92)
155 TIGR00358 3_prime_RNase VacB a 97.8 4.1E-05 9E-10 101.5 10.0 74 1465-1538 569-653 (654)
156 TIGR00448 rpoE DNA-directed RN 97.8 6.2E-05 1.3E-09 83.8 9.7 77 1377-1454 80-172 (179)
157 PRK15359 type III secretion sy 97.8 0.00033 7.3E-09 75.2 15.0 124 1672-1805 13-137 (144)
158 TIGR01953 NusA transcription t 97.8 4.6E-05 9.9E-10 92.2 8.5 122 714-850 80-209 (341)
159 cd05791 S1_CSL4 S1_CSL4: CSL4, 97.8 6.4E-05 1.4E-09 74.0 7.7 74 1377-1451 5-88 (92)
160 KOG1067 Predicted RNA-binding 97.8 1.9E-05 4.2E-10 95.4 4.8 76 757-832 664-739 (760)
161 PRK10370 formate-dependent nit 97.8 0.00042 9.1E-09 78.6 15.1 118 1672-1794 59-178 (198)
162 PRK08563 DNA-directed RNA poly 97.7 0.00012 2.6E-09 82.3 10.1 78 1466-1545 79-172 (187)
163 TIGR02552 LcrH_SycD type III s 97.7 0.00065 1.4E-08 71.7 14.8 120 1673-1799 4-124 (135)
164 KOG1067 Predicted RNA-binding 97.7 4E-05 8.8E-10 92.8 5.5 79 1463-1543 663-741 (760)
165 TIGR02063 RNase_R ribonuclease 97.7 9.5E-05 2.1E-09 99.4 9.8 73 758-830 624-708 (709)
166 PRK11788 tetratricopeptide rep 97.7 0.00055 1.2E-08 85.9 16.0 134 1665-1804 193-326 (389)
167 PRK12370 invasion protein regu 97.7 0.00056 1.2E-08 90.0 16.6 138 1665-1809 351-490 (553)
168 TIGR03302 OM_YfiO outer membra 97.7 0.00072 1.6E-08 78.7 15.6 145 1664-1810 45-219 (235)
169 TIGR00990 3a0801s09 mitochondr 97.7 0.00051 1.1E-08 91.8 16.2 132 1671-1809 313-448 (615)
170 cd05701 S1_Rrp5_repeat_hs10 S1 97.7 5.6E-05 1.2E-09 66.0 4.4 59 971-1029 1-60 (69)
171 PRK12370 invasion protein regu 97.6 0.00047 1E-08 90.7 15.2 135 1668-1809 320-456 (553)
172 TIGR01953 NusA transcription t 97.6 7.6E-05 1.7E-09 90.3 6.6 107 542-656 83-198 (341)
173 TIGR02917 PEP_TPR_lipo putativ 97.6 0.0006 1.3E-08 94.4 16.2 138 1666-1810 513-651 (899)
174 KOG1914 mRNA cleavage and poly 97.6 0.00058 1.3E-08 83.5 13.2 130 1672-1809 351-487 (656)
175 KOG2396 HAT (Half-A-TPR) repea 97.6 0.00066 1.4E-08 82.7 13.6 133 1671-1810 36-190 (568)
176 TIGR02917 PEP_TPR_lipo putativ 97.5 0.001 2.2E-08 92.0 17.4 137 1666-1809 547-684 (899)
177 PRK12327 nusA transcription el 97.5 0.00013 2.8E-09 88.8 7.2 122 715-850 84-211 (362)
178 PRK15174 Vi polysaccharide exp 97.5 0.001 2.2E-08 89.3 16.0 137 1666-1809 226-367 (656)
179 PRK12327 nusA transcription el 97.5 0.00011 2.3E-09 89.5 6.0 106 542-655 86-199 (362)
180 COG1095 RPB7 DNA-directed RNA 97.5 0.00025 5.4E-09 76.6 7.7 75 1378-1453 81-171 (183)
181 PRK11642 exoribonuclease R; Pr 97.5 0.00031 6.8E-09 94.5 10.2 72 1377-1448 642-725 (813)
182 PRK11447 cellulose synthase su 97.5 0.0016 3.5E-08 93.0 18.0 140 1665-1806 282-431 (1157)
183 TIGR00358 3_prime_RNase VacB a 97.5 0.00034 7.3E-09 93.0 10.2 71 1377-1447 571-653 (654)
184 PF08424 NRDE-2: NRDE-2, neces 97.4 0.0013 2.7E-08 80.4 14.0 114 1672-1790 51-184 (321)
185 PRK08563 DNA-directed RNA poly 97.4 0.0005 1.1E-08 77.3 9.6 77 1377-1454 80-172 (187)
186 KOG2076 RNA polymerase III tra 97.4 0.0027 5.8E-08 82.4 16.9 123 1664-1793 151-274 (895)
187 PF09976 TPR_21: Tetratricopep 97.4 0.0036 7.7E-08 67.4 15.0 117 1667-1787 25-145 (145)
188 PRK11447 cellulose synthase su 97.4 0.0027 5.9E-08 90.8 18.2 141 1665-1808 364-543 (1157)
189 KOG1914 mRNA cleavage and poly 97.4 0.0019 4.2E-08 79.2 13.9 133 1673-1807 266-448 (656)
190 PRK15179 Vi polysaccharide bio 97.3 0.0043 9.2E-08 82.6 17.6 130 1665-1801 99-229 (694)
191 PRK09782 bacteriophage N4 rece 97.3 0.0043 9.3E-08 85.7 17.7 140 1666-1813 590-735 (987)
192 PHA02858 EIF2a-like PKR inhibi 97.2 0.0009 2E-08 62.5 7.2 73 1464-1538 12-85 (86)
193 PRK10747 putative protoheme IX 97.2 0.0036 7.8E-08 79.1 15.3 129 1672-1811 245-378 (398)
194 cd04462 S1_RNAPII_Rpb7 S1_RNAP 97.2 0.0019 4.1E-08 63.1 9.3 73 1468-1542 1-86 (88)
195 PRK09782 bacteriophage N4 rece 97.2 0.0035 7.5E-08 86.6 14.9 138 1665-1810 555-693 (987)
196 cd05700 S1_Rrp5_repeat_hs9 S1_ 97.2 0.0026 5.5E-08 55.2 8.4 64 875-938 1-65 (65)
197 TIGR00540 hemY_coli hemY prote 97.1 0.0077 1.7E-07 76.4 16.9 135 1670-1810 243-386 (409)
198 PRK15174 Vi polysaccharide exp 97.1 0.0098 2.1E-07 79.9 18.7 136 1665-1808 89-226 (656)
199 PF08311 Mad3_BUB1_I: Mad3/BUB 97.1 0.0036 7.9E-08 65.5 11.3 108 1672-1787 5-126 (126)
200 PRK05054 exoribonuclease II; P 97.1 0.0013 2.8E-08 87.1 9.7 70 1469-1538 562-643 (644)
201 KOG1258 mRNA processing protei 97.1 0.0038 8.2E-08 78.4 12.9 117 1687-1810 298-416 (577)
202 PRK15179 Vi polysaccharide bio 97.1 0.01 2.2E-07 79.1 17.8 132 1673-1811 73-205 (694)
203 PRK10049 pgaA outer membrane p 97.1 0.0066 1.4E-07 83.1 16.7 137 1665-1809 28-165 (765)
204 PRK10747 putative protoheme IX 97.1 0.0071 1.5E-07 76.4 15.3 150 1656-1809 157-343 (398)
205 KOG0547 Translocase of outer m 97.0 0.01 2.3E-07 72.2 15.2 146 1656-1808 330-476 (606)
206 cd00189 TPR Tetratricopeptide 97.0 0.0057 1.2E-07 58.0 11.1 97 1688-1791 2-99 (100)
207 PRK10049 pgaA outer membrane p 97.0 0.0087 1.9E-07 82.0 16.6 142 1666-1809 286-442 (765)
208 PRK11189 lipoprotein NlpI; Pro 97.0 0.01 2.2E-07 71.9 15.1 119 1666-1791 78-196 (296)
209 cd04462 S1_RNAPII_Rpb7 S1_RNAP 96.9 0.0039 8.4E-08 60.9 8.7 63 1378-1441 1-74 (88)
210 smart00386 HAT HAT (Half-A-TPR 96.9 0.0014 3.1E-08 50.8 4.5 32 1774-1805 1-32 (33)
211 KOG0128 RNA-binding protein SA 96.8 0.0096 2.1E-07 76.7 13.4 145 1666-1814 164-332 (881)
212 PRK11189 lipoprotein NlpI; Pro 96.8 0.022 4.7E-07 69.0 16.2 109 1684-1799 62-173 (296)
213 PHA02858 EIF2a-like PKR inhibi 96.8 0.0026 5.7E-08 59.5 5.9 69 1377-1447 15-85 (86)
214 COG1096 Predicted RNA-binding 96.7 0.0095 2.1E-07 64.6 10.6 75 1463-1540 59-142 (188)
215 PF14559 TPR_19: Tetratricopep 96.7 0.0029 6.2E-08 58.3 6.0 64 1738-1803 4-68 (68)
216 COG1107 Archaea-specific RecJ- 96.7 0.0079 1.7E-07 74.4 11.2 156 754-938 115-282 (715)
217 PF02184 HAT: HAT (Half-A-TPR) 96.7 0.002 4.3E-08 49.5 3.6 30 1775-1805 2-31 (32)
218 KOG4626 O-linked N-acetylgluco 96.7 0.0064 1.4E-07 75.4 9.9 131 1669-1809 269-403 (966)
219 PF10447 EXOSC1: Exosome compo 96.7 0.0044 9.6E-08 59.2 6.6 61 1467-1527 3-82 (82)
220 PLN03088 SGT1, suppressor of 96.7 0.027 6E-07 69.9 15.7 96 1694-1796 10-106 (356)
221 cd05804 StaR_like StaR_like; a 96.6 0.019 4.2E-07 71.1 14.0 145 1662-1810 53-202 (355)
222 KOG1155 Anaphase-promoting com 96.6 0.029 6.2E-07 68.3 14.4 130 1671-1807 349-479 (559)
223 PF13428 TPR_14: Tetratricopep 96.6 0.0051 1.1E-07 51.8 5.7 42 1761-1802 2-43 (44)
224 COG1097 RRP4 RNA-binding prote 96.5 0.012 2.7E-07 66.4 10.0 74 1377-1451 63-140 (239)
225 PTZ00162 DNA-directed RNA poly 96.5 0.011 2.4E-07 65.4 9.3 77 1467-1545 80-170 (176)
226 TIGR02795 tol_pal_ybgF tol-pal 96.5 0.049 1.1E-06 55.5 13.7 105 1687-1795 3-111 (119)
227 smart00777 Mad3_BUB1_I Mad3/BU 96.5 0.033 7.2E-07 57.9 12.0 93 1686-1786 22-125 (125)
228 KOG2396 HAT (Half-A-TPR) repea 96.4 0.018 3.9E-07 70.7 11.5 87 1724-1810 50-155 (568)
229 PRK14574 hmsH outer membrane p 96.4 0.032 7E-07 75.8 15.3 138 1666-1810 82-219 (822)
230 COG0557 VacB Exoribonuclease R 96.4 0.0074 1.6E-07 81.3 8.7 76 1463-1538 617-703 (706)
231 PRK10803 tol-pal system protei 96.4 0.053 1.1E-06 64.2 14.7 107 1685-1795 141-252 (263)
232 TIGR00540 hemY_coli hemY prote 96.4 0.062 1.3E-06 68.2 16.5 130 1655-1790 87-217 (409)
233 cd00189 TPR Tetratricopeptide 96.3 0.019 4.2E-07 54.2 9.3 81 1727-1809 2-83 (100)
234 PF13432 TPR_16: Tetratricopep 96.3 0.016 3.4E-07 52.9 8.2 62 1731-1794 3-65 (65)
235 TIGR02062 RNase_B exoribonucle 96.3 0.0085 1.8E-07 79.4 8.6 69 1469-1537 558-638 (639)
236 COG1107 Archaea-specific RecJ- 96.3 0.012 2.6E-07 72.9 9.0 72 1462-1540 116-187 (715)
237 PRK12328 nusA transcription el 96.3 0.0053 1.2E-07 74.3 6.0 122 714-850 87-217 (374)
238 TIGR03302 OM_YfiO outer membra 96.3 0.065 1.4E-06 62.3 14.9 126 1665-1792 83-235 (235)
239 cd05790 S1_Rrp40 S1_Rrp40: Rrp 96.2 0.026 5.7E-07 54.6 9.0 72 1377-1450 5-76 (86)
240 PRK10153 DNA-binding transcrip 96.2 0.038 8.2E-07 71.7 13.3 127 1668-1800 358-492 (517)
241 COG5191 Uncharacterized conser 96.1 0.017 3.8E-07 66.6 8.5 138 1668-1808 33-190 (435)
242 KOG2076 RNA polymerase III tra 96.0 0.22 4.7E-06 65.5 18.8 103 1682-1791 203-311 (895)
243 KOG2916 Translation initiation 96.0 0.0049 1.1E-07 69.2 3.6 76 1466-1541 14-90 (304)
244 KOG1856 Transcription elongati 96.0 0.0063 1.4E-07 80.3 5.0 78 758-835 982-1062(1299)
245 TIGR00757 RNaseEG ribonuclease 96.0 0.015 3.2E-07 72.9 8.0 63 1465-1528 22-98 (414)
246 PRK05054 exoribonuclease II; P 96.0 0.019 4E-07 76.4 9.3 71 760-830 558-643 (644)
247 PLN03088 SGT1, suppressor of 96.0 0.056 1.2E-06 67.2 12.9 103 1661-1770 11-114 (356)
248 KOG4626 O-linked N-acetylgluco 95.9 0.062 1.4E-06 67.1 12.2 129 1667-1803 369-499 (966)
249 COG1096 Predicted RNA-binding 95.9 0.057 1.2E-06 58.8 10.5 71 1376-1449 62-142 (188)
250 KOG1856 Transcription elongati 95.8 0.0079 1.7E-07 79.5 4.7 80 1374-1453 981-1063(1299)
251 COG4783 Putative Zn-dependent 95.8 0.26 5.5E-06 61.2 17.1 134 1667-1808 321-455 (484)
252 PTZ00162 DNA-directed RNA poly 95.7 0.035 7.5E-07 61.5 8.7 72 1378-1450 81-166 (176)
253 PF13509 S1_2: S1 domain; PDB: 95.7 0.029 6.4E-07 50.9 6.7 60 498-566 1-61 (61)
254 KOG1126 DNA-binding cell divis 95.7 0.042 9E-07 69.9 10.2 142 1668-1811 335-540 (638)
255 PRK10370 formate-dependent nit 95.7 0.13 2.8E-06 58.5 13.5 105 1699-1810 52-160 (198)
256 COG1097 RRP4 RNA-binding prote 95.7 0.17 3.6E-06 57.6 13.9 103 542-656 29-138 (239)
257 TIGR02552 LcrH_SycD type III s 95.7 0.093 2E-06 55.2 11.6 97 1708-1811 5-102 (135)
258 PRK12328 nusA transcription el 95.7 0.033 7.1E-07 67.7 8.9 107 542-656 90-206 (374)
259 COG3063 PilF Tfp pilus assembl 95.6 0.16 3.5E-06 57.4 13.0 116 1687-1809 36-154 (250)
260 PRK02603 photosystem I assembl 95.5 0.44 9.5E-06 52.8 16.5 105 1684-1792 33-152 (172)
261 PRK14574 hmsH outer membrane p 95.5 0.16 3.5E-06 69.2 15.4 120 1665-1792 47-168 (822)
262 TIGR00757 RNaseEG ribonuclease 95.5 0.033 7.2E-07 69.8 8.1 60 1376-1435 23-96 (414)
263 PF13509 S1_2: S1 domain; PDB: 95.4 0.058 1.3E-06 49.0 7.5 61 585-655 1-61 (61)
264 COG4783 Putative Zn-dependent 95.4 0.51 1.1E-05 58.7 17.6 122 1680-1810 300-424 (484)
265 PRK15359 type III secretion sy 95.4 0.14 3E-06 55.1 11.6 93 1707-1809 14-107 (144)
266 TIGR02795 tol_pal_ybgF tol-pal 95.3 0.12 2.7E-06 52.5 10.6 82 1726-1809 3-91 (119)
267 cd05804 StaR_like StaR_like; a 95.3 0.22 4.8E-06 61.6 14.8 137 1666-1809 20-163 (355)
268 PLN03218 maturation of RBCL 1; 95.3 0.25 5.3E-06 69.4 16.4 115 1686-1807 507-627 (1060)
269 PF10447 EXOSC1: Exosome compo 95.3 0.043 9.3E-07 52.6 6.3 60 1377-1436 3-82 (82)
270 PF08311 Mad3_BUB1_I: Mad3/BUB 95.3 0.094 2E-06 55.0 9.5 100 1702-1809 1-114 (126)
271 KOG0547 Translocase of outer m 95.3 0.17 3.7E-06 62.2 12.8 118 1668-1792 376-494 (606)
272 PF14559 TPR_19: Tetratricopep 95.2 0.02 4.4E-07 52.6 3.8 52 1667-1718 6-57 (68)
273 PRK02603 photosystem I assembl 95.2 0.22 4.7E-06 55.2 12.7 82 1726-1809 36-121 (172)
274 PLN03218 maturation of RBCL 1; 95.2 0.24 5.2E-06 69.5 15.8 110 1671-1787 598-711 (1060)
275 KOG2003 TPR repeat-containing 95.1 0.19 4.1E-06 60.5 12.3 119 1671-1796 577-696 (840)
276 PF09295 ChAPs: ChAPs (Chs5p-A 95.0 0.3 6.4E-06 61.0 14.4 67 1742-1808 215-282 (395)
277 cd05790 S1_Rrp40 S1_Rrp40: Rrp 94.9 0.12 2.7E-06 50.0 8.3 71 496-567 4-75 (86)
278 KOG2916 Translation initiation 94.8 0.032 6.9E-07 62.9 4.8 91 760-852 15-107 (304)
279 COG5191 Uncharacterized conser 94.8 0.039 8.5E-07 63.8 5.6 97 1668-1771 88-187 (435)
280 smart00386 HAT HAT (Half-A-TPR 94.8 0.04 8.6E-07 42.5 4.0 30 1701-1735 2-31 (33)
281 PLN02789 farnesyltranstransfer 94.8 0.52 1.1E-05 57.6 15.5 135 1666-1805 51-187 (320)
282 PF13525 YfiO: Outer membrane 94.7 0.64 1.4E-05 53.1 15.2 153 1657-1809 10-193 (203)
283 COG5010 TadD Flp pilus assembl 94.7 0.37 7.9E-06 55.6 12.8 132 1672-1811 53-185 (257)
284 PF09295 ChAPs: ChAPs (Chs5p-A 94.7 0.25 5.5E-06 61.6 12.6 110 1667-1786 184-294 (395)
285 PF12895 Apc3: Anaphase-promot 94.7 0.15 3.3E-06 49.2 8.6 83 1698-1786 1-84 (84)
286 CHL00033 ycf3 photosystem I as 94.7 0.58 1.3E-05 51.5 14.4 119 1669-1791 16-151 (168)
287 PF13431 TPR_17: Tetratricopep 94.6 0.037 8E-07 43.9 3.4 33 1675-1707 2-34 (34)
288 TIGR02062 RNase_B exoribonucle 94.6 0.083 1.8E-06 70.3 8.7 67 1379-1445 558-637 (639)
289 PF02184 HAT: HAT (Half-A-TPR) 94.4 0.039 8.4E-07 42.6 2.9 30 1742-1771 2-31 (32)
290 COG0557 VacB Exoribonuclease R 94.4 0.093 2E-06 70.9 8.6 76 756-831 617-704 (706)
291 COG5107 RNA14 Pre-mRNA 3'-end 94.4 0.22 4.8E-06 60.4 10.6 114 1684-1804 395-512 (660)
292 PRK14720 transcript cleavage f 94.3 0.28 6E-06 66.5 12.5 135 1666-1805 130-268 (906)
293 PF12688 TPR_5: Tetratrico pep 94.2 0.34 7.4E-06 50.3 10.4 81 1727-1809 3-90 (120)
294 PRK12329 nusA transcription el 94.2 0.15 3.3E-06 63.0 9.0 107 542-655 102-224 (449)
295 KOG2002 TPR-containing nuclear 94.0 0.16 3.4E-06 67.1 9.0 139 1666-1805 544-691 (1018)
296 KOG1128 Uncharacterized conser 93.9 0.13 2.9E-06 66.0 7.9 137 1665-1809 498-638 (777)
297 PF04733 Coatomer_E: Coatomer 93.9 0.56 1.2E-05 56.5 13.0 134 1672-1810 115-251 (290)
298 COG5107 RNA14 Pre-mRNA 3'-end 93.8 0.6 1.3E-05 56.9 12.7 125 1674-1805 30-163 (660)
299 PF12895 Apc3: Anaphase-promot 93.7 0.12 2.5E-06 50.0 5.5 69 1738-1809 2-73 (84)
300 PLN03081 pentatricopeptide (PP 93.7 0.34 7.3E-06 66.1 12.1 116 1687-1811 392-511 (697)
301 KOG1840 Kinesin light chain [C 93.6 0.32 7E-06 62.4 10.8 123 1666-1790 255-397 (508)
302 PF13414 TPR_11: TPR repeat; P 93.6 0.29 6.3E-06 45.0 7.9 63 1727-1791 5-69 (69)
303 KOG1155 Anaphase-promoting com 93.6 1.3 2.8E-05 54.6 14.9 137 1671-1807 246-411 (559)
304 COG4235 Cytochrome c biogenesi 93.5 1.3 2.9E-05 52.3 14.7 122 1675-1802 145-268 (287)
305 PF13414 TPR_11: TPR repeat; P 93.1 0.21 4.7E-06 45.9 6.2 50 1759-1808 2-51 (69)
306 KOG0553 TPR repeat-containing 93.1 0.83 1.8E-05 53.8 11.9 93 1666-1768 95-190 (304)
307 KOG1125 TPR repeat-containing 93.1 0.51 1.1E-05 59.5 10.9 51 1665-1715 298-348 (579)
308 PRK12329 nusA transcription el 93.0 0.29 6.2E-06 60.7 8.6 70 232-303 152-228 (449)
309 PF13428 TPR_14: Tetratricopep 92.9 0.19 4.1E-06 42.3 4.9 42 1687-1733 2-43 (44)
310 PLN03081 pentatricopeptide (PP 92.3 0.85 1.8E-05 62.2 12.8 92 1689-1789 465-557 (697)
311 PF13432 TPR_16: Tetratricopep 92.2 0.16 3.5E-06 46.2 4.0 53 1665-1717 10-62 (65)
312 smart00777 Mad3_BUB1_I Mad3/BU 92.2 0.78 1.7E-05 47.9 9.3 98 1704-1809 3-114 (125)
313 KOG1173 Anaphase-promoting com 92.1 1.9 4E-05 54.6 13.9 47 1763-1809 458-504 (611)
314 PRK14720 transcript cleavage f 92.1 1.2 2.5E-05 60.7 13.2 133 1668-1808 47-203 (906)
315 PF13371 TPR_9: Tetratricopept 92.1 0.29 6.2E-06 45.6 5.6 55 1665-1719 8-62 (73)
316 PF13371 TPR_9: Tetratricopept 92.0 0.66 1.4E-05 43.1 8.0 60 1737-1798 7-67 (73)
317 PRK10866 outer membrane biogen 92.0 1.2 2.7E-05 52.2 12.0 105 1686-1794 32-158 (243)
318 KOG1126 DNA-binding cell divis 91.8 0.92 2E-05 58.2 11.0 45 1767-1811 564-608 (638)
319 PRK15363 pathogenicity island 91.6 1.6 3.5E-05 47.3 11.1 88 1722-1811 32-120 (157)
320 PRK10803 tol-pal system protei 91.5 1.2 2.6E-05 53.0 11.1 75 1733-1809 151-232 (263)
321 KOG0128 RNA-binding protein SA 91.5 2.4 5.1E-05 55.8 14.2 117 1684-1808 113-242 (881)
322 PRK10811 rne ribonuclease E; R 91.4 0.44 9.5E-06 63.6 7.8 61 1377-1437 37-108 (1068)
323 PLN03077 Protein ECB2; Provisi 91.3 2.2 4.8E-05 59.7 15.5 120 1683-1811 551-674 (857)
324 PRK10866 outer membrane biogen 91.2 3.7 8E-05 48.3 14.8 136 1658-1795 38-210 (243)
325 PF13525 YfiO: Outer membrane 91.0 2.4 5.1E-05 48.4 12.7 105 1688-1796 7-126 (203)
326 PLN02789 farnesyltranstransfer 91.0 2.7 5.8E-05 51.5 13.9 131 1669-1806 89-229 (320)
327 COG3071 HemY Uncharacterized e 90.9 2.7 5.8E-05 51.3 13.1 118 1683-1811 260-378 (400)
328 PF13512 TPR_18: Tetratricopep 90.8 4.5 9.8E-05 43.2 13.3 105 1686-1794 10-133 (142)
329 CHL00033 ycf3 photosystem I as 90.7 1.9 4E-05 47.5 11.2 85 1722-1808 32-120 (168)
330 PLN03077 Protein ECB2; Provisi 90.7 1.6 3.4E-05 61.1 13.1 107 1692-1809 530-640 (857)
331 PRK10811 rne ribonuclease E; R 90.7 0.49 1.1E-05 63.2 7.3 65 1467-1532 37-112 (1068)
332 PRK15363 pathogenicity island 90.6 3.3 7.2E-05 44.9 12.3 93 1691-1790 40-133 (157)
333 PF09976 TPR_21: Tetratricopep 90.6 4.6 0.0001 43.3 13.8 108 1698-1810 23-134 (145)
334 PF02259 FAT: FAT domain; Int 90.3 2.6 5.7E-05 52.0 13.3 125 1682-1809 142-307 (352)
335 KOG2002 TPR-containing nuclear 90.2 3.1 6.7E-05 55.7 13.8 128 1672-1804 256-386 (1018)
336 PF13174 TPR_6: Tetratricopept 90.1 0.48 1E-05 36.6 4.2 32 1762-1793 2-33 (33)
337 PRK10153 DNA-binding transcrip 90.1 7.3 0.00016 50.9 17.4 140 1668-1811 319-470 (517)
338 PRK11906 transcriptional regul 89.9 3.5 7.6E-05 51.8 13.4 122 1672-1800 278-418 (458)
339 KOG4234 TPR repeat-containing 89.8 6.8 0.00015 43.6 13.7 100 1697-1802 106-210 (271)
340 PRK11712 ribonuclease G; Provi 89.5 0.68 1.5E-05 59.3 7.2 65 1465-1530 35-113 (489)
341 COG3118 Thioredoxin domain-con 89.4 6.5 0.00014 46.6 14.2 130 1652-1790 134-266 (304)
342 PF12569 NARP1: NMDA receptor- 89.2 3.3 7.2E-05 53.8 13.2 123 1680-1809 186-320 (517)
343 COG2956 Predicted N-acetylgluc 89.1 7.5 0.00016 46.3 14.4 136 1667-1810 195-331 (389)
344 COG2956 Predicted N-acetylgluc 89.0 6.9 0.00015 46.6 14.0 124 1663-1792 46-173 (389)
345 KOG1173 Anaphase-promoting com 88.8 2.3 4.9E-05 53.8 10.6 111 1677-1794 303-414 (611)
346 KOG1840 Kinesin light chain [C 88.5 3.6 7.8E-05 53.1 12.5 124 1682-1809 237-382 (508)
347 PF14938 SNAP: Soluble NSF att 88.4 3.2 7E-05 49.9 11.7 139 1666-1809 49-211 (282)
348 KOG0553 TPR repeat-containing 88.2 2.6 5.6E-05 49.8 10.0 106 1697-1809 92-200 (304)
349 KOG3298 DNA-directed RNA polym 87.8 2.3 4.9E-05 45.5 8.3 59 1378-1437 81-150 (170)
350 PF07719 TPR_2: Tetratricopept 87.7 1.2 2.7E-05 34.5 5.1 32 1761-1792 2-33 (34)
351 cd05701 S1_Rrp5_repeat_hs10 S1 87.4 0.47 1E-05 42.3 2.6 58 1165-1224 2-60 (69)
352 KOG3785 Uncharacterized conser 87.3 1.8 3.8E-05 51.5 7.9 85 1696-1786 32-117 (557)
353 COG0457 NrfG FOG: TPR repeat [ 87.1 15 0.00032 40.2 15.3 134 1668-1805 111-247 (291)
354 PRK11712 ribonuclease G; Provi 86.9 1.3 2.9E-05 56.8 7.4 59 1377-1435 37-109 (489)
355 KOG1129 TPR repeat-containing 86.9 2.9 6.3E-05 49.4 9.3 121 1668-1792 339-461 (478)
356 KOG1128 Uncharacterized conser 86.8 2.2 4.7E-05 55.5 9.0 137 1666-1809 464-602 (777)
357 KOG0543 FKBP-type peptidyl-pro 86.8 6.3 0.00014 48.5 12.5 110 1694-1803 216-334 (397)
358 PF03704 BTAD: Bacterial trans 86.6 11 0.00024 40.3 13.4 63 1726-1790 63-126 (146)
359 KOG3409 Exosomal 3'-5' exoribo 85.8 1.8 4E-05 46.4 6.4 68 497-564 67-145 (193)
360 PF12688 TPR_5: Tetratrico pep 85.6 17 0.00038 37.8 13.5 97 1688-1788 3-103 (120)
361 PF13424 TPR_12: Tetratricopep 85.6 2.9 6.3E-05 39.4 7.3 64 1726-1791 6-77 (78)
362 KOG3298 DNA-directed RNA polym 85.2 4.5 9.7E-05 43.3 8.9 65 1468-1534 81-156 (170)
363 PF10246 MRP-S35: Mitochondria 85.2 3.5 7.6E-05 40.9 7.5 60 489-556 15-74 (104)
364 PF10602 RPN7: 26S proteasome 85.0 9.4 0.0002 42.7 12.1 100 1687-1790 37-143 (177)
365 PRK11906 transcriptional regul 84.9 1.8 3.9E-05 54.2 6.9 85 1663-1754 349-434 (458)
366 COG5010 TadD Flp pilus assembl 84.3 24 0.00052 41.2 15.0 118 1667-1791 81-199 (257)
367 KOG3060 Uncharacterized conser 84.3 25 0.00055 40.9 14.8 126 1666-1798 100-229 (289)
368 KOG4162 Predicted calmodulin-b 84.1 9.7 0.00021 50.1 12.9 117 1686-1811 650-771 (799)
369 KOG3409 Exosomal 3'-5' exoribo 84.1 4.8 0.0001 43.4 8.5 68 1161-1228 66-141 (193)
370 COG3071 HemY Uncharacterized e 83.9 42 0.0009 41.5 17.3 151 1655-1809 156-343 (400)
371 PF08292 RNA_pol_Rbc25: RNA po 83.4 3.3 7.3E-05 43.1 7.1 60 1378-1437 3-75 (122)
372 COG4700 Uncharacterized protei 83.2 17 0.00037 40.2 12.4 108 1694-1808 97-207 (251)
373 PRK12442 translation initiatio 83.2 5 0.00011 38.8 7.4 65 1471-1540 8-73 (87)
374 KOG0624 dsRNA-activated protei 83.2 40 0.00087 40.6 16.2 145 1665-1809 85-238 (504)
375 PF08292 RNA_pol_Rbc25: RNA po 83.0 3.4 7.4E-05 43.0 7.0 58 498-556 3-74 (122)
376 KOG1832 HIV-1 Vpr-binding prot 82.8 0.67 1.5E-05 60.2 2.0 28 1168-1198 1105-1132(1516)
377 KOG2471 TPR repeat-containing 81.2 4.5 9.8E-05 50.2 8.0 116 1684-1805 238-380 (696)
378 PF13176 TPR_7: Tetratricopept 81.0 2.4 5.3E-05 33.9 4.0 27 1763-1789 2-28 (36)
379 PF13424 TPR_12: Tetratricopep 80.8 5.8 0.00012 37.4 7.3 71 1683-1755 2-74 (78)
380 TIGR00008 infA translation ini 80.7 6.5 0.00014 36.5 7.0 61 1471-1536 6-67 (68)
381 KOG1156 N-terminal acetyltrans 80.5 18 0.00039 46.9 13.1 129 1673-1804 130-263 (700)
382 KOG1166 Mitotic checkpoint ser 80.2 16 0.00035 50.5 13.6 126 1672-1804 14-159 (974)
383 COG0457 NrfG FOG: TPR repeat [ 80.0 51 0.0011 35.8 15.9 136 1666-1808 73-216 (291)
384 PF13431 TPR_17: Tetratricopep 79.4 2.4 5.1E-05 33.7 3.4 32 1750-1781 2-34 (34)
385 PF10246 MRP-S35: Mitochondria 77.9 7.5 0.00016 38.7 6.9 54 969-1029 22-75 (104)
386 KOG1174 Anaphase-promoting com 77.8 10 0.00022 46.5 9.4 88 1702-1796 420-507 (564)
387 PF14938 SNAP: Soluble NSF att 77.3 10 0.00022 45.6 9.7 119 1687-1808 36-169 (282)
388 KOG3060 Uncharacterized conser 77.3 45 0.00097 39.0 13.8 131 1673-1809 73-203 (289)
389 PF06552 TOM20_plant: Plant sp 76.8 27 0.00058 38.8 11.5 97 1671-1770 10-123 (186)
390 COG3629 DnrI DNA-binding trans 76.5 20 0.00043 42.9 11.4 96 1724-1821 152-254 (280)
391 COG4235 Cytochrome c biogenesi 76.4 9.7 0.00021 45.3 8.7 67 1743-1809 138-205 (287)
392 KOG0543 FKBP-type peptidyl-pro 76.0 19 0.0004 44.6 11.1 97 1688-1791 259-357 (397)
393 COG3898 Uncharacterized membra 76.0 48 0.001 40.7 14.1 139 1656-1803 124-305 (531)
394 PF00515 TPR_1: Tetratricopept 75.5 6.6 0.00014 30.6 5.0 32 1761-1792 2-33 (34)
395 cd05700 S1_Rrp5_repeat_hs9 S1_ 74.6 13 0.00029 33.1 6.8 62 322-391 1-65 (65)
396 PRK04841 transcriptional regul 74.5 59 0.0013 45.9 17.6 122 1665-1790 465-603 (903)
397 PLN03098 LPA1 LOW PSII ACCUMUL 74.3 21 0.00046 45.1 11.2 49 1666-1714 89-140 (453)
398 PF03704 BTAD: Bacterial trans 74.1 21 0.00046 38.1 10.2 61 1687-1754 63-123 (146)
399 PF13181 TPR_8: Tetratricopept 74.0 6.5 0.00014 30.5 4.6 31 1761-1791 2-32 (34)
400 COG1729 Uncharacterized protei 74.0 21 0.00045 42.1 10.5 95 1698-1796 153-251 (262)
401 KOG3081 Vesicle coat complex C 73.7 66 0.0014 37.9 14.0 68 1742-1809 188-256 (299)
402 COG1530 CafA Ribonucleases G a 73.1 4.6 0.0001 52.2 5.5 75 1376-1451 35-116 (487)
403 KOG1999 RNA polymerase II tran 72.3 3.1 6.6E-05 55.6 3.6 43 1669-1714 148-190 (1024)
404 COG1530 CafA Ribonucleases G a 72.3 4.5 9.7E-05 52.3 5.1 72 1463-1536 32-110 (487)
405 PF01535 PPR: PPR repeat; Int 71.3 4.4 9.6E-05 30.5 3.0 28 1762-1789 2-29 (31)
406 KOG1129 TPR repeat-containing 71.1 26 0.00057 41.8 10.3 110 1691-1808 228-354 (478)
407 PF12569 NARP1: NMDA receptor- 70.3 57 0.0012 42.7 14.4 51 1759-1809 191-243 (517)
408 KOG2053 Mitochondrial inherita 70.2 58 0.0013 44.0 14.1 133 1666-1805 23-155 (932)
409 PF09205 DUF1955: Domain of un 70.1 56 0.0012 34.5 11.2 131 1655-1789 5-149 (161)
410 PF12854 PPR_1: PPR repeat 69.5 7.3 0.00016 30.9 3.9 30 1757-1786 4-33 (34)
411 PF04147 Nop14: Nop14-like fam 69.3 12 0.00025 52.0 8.4 19 1667-1685 423-441 (840)
412 KOG1127 TPR repeat-containing 68.6 39 0.00084 46.0 12.1 132 1668-1806 539-683 (1238)
413 PF10300 DUF3808: Protein of u 68.4 38 0.00082 44.0 12.3 113 1672-1788 253-375 (468)
414 KOG3785 Uncharacterized conser 68.0 45 0.00098 40.2 11.4 120 1669-1794 74-219 (557)
415 KOG0548 Molecular co-chaperone 66.5 43 0.00094 42.7 11.5 115 1665-1786 371-486 (539)
416 PRK15331 chaperone protein Sic 65.9 67 0.0014 35.4 11.5 93 1691-1790 42-135 (165)
417 KOG1174 Anaphase-promoting com 65.5 88 0.0019 38.9 13.3 62 1742-1804 419-481 (564)
418 KOG1127 TPR repeat-containing 65.5 41 0.00088 45.8 11.4 131 1667-1804 577-723 (1238)
419 PRK04841 transcriptional regul 65.1 80 0.0017 44.6 15.7 95 1695-1791 461-562 (903)
420 PF13512 TPR_18: Tetratricopep 64.6 17 0.00038 38.9 6.7 58 1737-1796 22-83 (142)
421 COG4700 Uncharacterized protei 63.7 2.2E+02 0.0048 32.0 14.7 133 1665-1802 102-242 (251)
422 PRK15331 chaperone protein Sic 63.7 37 0.00079 37.3 9.0 85 1724-1810 36-121 (165)
423 KOG1156 N-terminal acetyltrans 63.4 39 0.00084 44.0 10.4 112 1672-1790 61-173 (700)
424 smart00028 TPR Tetratricopepti 62.8 12 0.00026 27.1 3.9 32 1761-1792 2-33 (34)
425 KOG1125 TPR repeat-containing 62.6 20 0.00044 45.9 7.8 113 1665-1784 443-566 (579)
426 PF13041 PPR_2: PPR repeat fam 62.5 26 0.00056 30.0 6.4 44 1760-1803 3-47 (50)
427 KOG2376 Signal recognition par 61.9 1.1E+02 0.0023 39.9 13.7 124 1678-1803 367-501 (652)
428 PF06552 TOM20_plant: Plant sp 61.6 1.4E+02 0.0031 33.3 13.0 96 1702-1800 7-120 (186)
429 PLN03098 LPA1 LOW PSII ACCUMUL 61.4 25 0.00054 44.5 8.2 60 1728-1789 78-141 (453)
430 PF11207 DUF2989: Protein of u 61.3 46 0.001 37.7 9.5 101 1671-1780 93-198 (203)
431 COG3898 Uncharacterized membra 60.3 1.2E+02 0.0026 37.5 13.1 122 1662-1789 239-392 (531)
432 PF04733 Coatomer_E: Coatomer 58.3 46 0.001 40.3 9.8 86 1668-1759 183-268 (290)
433 PRK10676 DNA-binding transcrip 58.1 91 0.002 37.2 12.0 114 136-286 129-254 (263)
434 COG4105 ComL DNA uptake lipopr 58.0 1.2E+02 0.0026 35.8 12.3 105 1685-1793 33-149 (254)
435 PRK06763 F0F1 ATP synthase sub 57.3 1.1E+02 0.0024 34.3 11.2 45 876-923 40-84 (213)
436 KOG0687 26S proteasome regulat 57.1 63 0.0014 39.0 9.9 101 1685-1790 103-211 (393)
437 PF08631 SPO22: Meiosis protei 56.9 1.3E+02 0.0029 36.1 13.4 118 1687-1804 36-165 (278)
438 KOG1586 Protein required for f 56.3 89 0.0019 36.2 10.6 84 1701-1790 88-184 (288)
439 PF02724 CDC45: CDC45-like pro 55.7 47 0.001 44.6 10.0 52 1668-1719 217-276 (622)
440 TIGR02996 rpt_mate_G_obs repea 55.0 26 0.00056 29.3 4.6 35 1672-1706 2-36 (42)
441 COG4105 ComL DNA uptake lipopr 53.4 57 0.0012 38.3 8.9 78 1724-1803 33-115 (254)
442 PF07719 TPR_2: Tetratricopept 53.3 26 0.00056 26.9 4.4 30 1687-1716 2-31 (34)
443 TIGR00756 PPR pentatricopeptid 53.2 20 0.00044 27.4 3.8 28 1762-1789 2-29 (35)
444 KOG0548 Molecular co-chaperone 52.8 2.4E+02 0.0052 36.5 14.6 141 1667-1810 239-408 (539)
445 KOG4162 Predicted calmodulin-b 50.7 2.5E+02 0.0055 37.7 14.7 112 1676-1792 674-786 (799)
446 KOG1308 Hsp70-interacting prot 50.5 42 0.00092 40.7 7.3 89 1661-1756 123-211 (377)
447 PRK15464 cold shock-like prote 49.7 47 0.001 31.3 6.1 51 1472-1526 5-57 (70)
448 PRK06386 replication factor A; 48.9 6.4E+02 0.014 31.6 18.9 193 1263-1485 17-236 (358)
449 KOG3616 Selective LIM binding 48.8 1.4E+02 0.003 39.3 11.6 123 1675-1812 466-607 (1636)
450 KOG1832 HIV-1 Vpr-binding prot 48.7 18 0.0004 47.8 4.3 16 183-198 147-162 (1516)
451 COG5187 RPN7 26S proteasome re 48.6 4.6E+02 0.0099 31.4 14.8 77 1675-1754 60-146 (412)
452 PRK12442 translation initiatio 48.4 83 0.0018 30.8 7.6 66 764-833 8-74 (87)
453 smart00299 CLH Clathrin heavy 48.1 1.7E+02 0.0037 30.9 11.2 55 1753-1807 75-138 (140)
454 PF12862 Apc5: Anaphase-promot 46.8 74 0.0016 31.5 7.5 20 1696-1715 8-27 (94)
455 PF10602 RPN7: 26S proteasome 46.1 1.1E+02 0.0024 34.3 9.6 63 1726-1790 37-103 (177)
456 KOG0624 dsRNA-activated protei 45.9 3.2E+02 0.0069 33.4 13.3 136 1667-1809 53-204 (504)
457 COG4148 ModC ABC-type molybdat 45.4 92 0.002 37.1 8.8 114 1259-1437 231-349 (352)
458 PRK15463 cold shock-like prote 45.3 60 0.0013 30.5 6.1 51 1472-1526 5-57 (70)
459 COG1729 Uncharacterized protei 44.4 85 0.0019 37.2 8.5 82 1727-1811 144-232 (262)
460 KOG4078 Putative mitochondrial 44.4 27 0.00058 36.4 3.9 54 320-381 81-134 (173)
461 PF11846 DUF3366: Domain of un 43.7 59 0.0013 36.7 7.1 48 1744-1791 128-175 (193)
462 KOG0550 Molecular chaperone (D 43.3 1.8E+02 0.0038 36.5 11.0 105 1699-1805 216-332 (486)
463 PF03459 TOBE: TOBE domain; I 43.0 43 0.00094 30.3 4.8 48 235-285 6-58 (64)
464 KOG1004 Exosomal 3'-5' exoribo 42.3 78 0.0017 35.8 7.3 61 1161-1224 63-123 (230)
465 PF13374 TPR_10: Tetratricopep 42.0 45 0.00098 26.7 4.4 30 1762-1791 4-33 (42)
466 KOG3617 WD40 and TPR repeat-co 41.8 1.6E+02 0.0034 39.6 10.8 117 1684-1808 755-926 (1416)
467 PF13812 PPR_3: Pentatricopept 41.8 47 0.001 25.4 4.2 28 1762-1789 3-30 (34)
468 PRK09937 stationary phase/star 41.4 75 0.0016 30.3 6.2 51 1473-1527 3-55 (74)
469 PRK10676 DNA-binding transcrip 41.1 1.6E+02 0.0034 35.3 10.4 114 763-924 128-252 (263)
470 KOG4555 TPR repeat-containing 41.0 3.9E+02 0.0085 28.4 11.5 97 1656-1759 51-147 (175)
471 TIGR00008 infA translation ini 40.9 1.1E+02 0.0023 28.8 6.8 60 764-827 6-66 (68)
472 PRK15464 cold shock-like prote 40.8 79 0.0017 29.7 6.2 50 1382-1435 5-57 (70)
473 PF01938 TRAM: TRAM domain; I 40.3 1.4E+02 0.0031 26.8 7.7 55 458-517 3-59 (61)
474 COG5593 Nucleic-acid-binding p 39.9 32 0.0007 43.2 4.4 13 1668-1680 808-820 (821)
475 PF13181 TPR_8: Tetratricopept 39.1 58 0.0013 25.1 4.4 29 1687-1715 2-30 (34)
476 PF00313 CSD: 'Cold-shock' DNA 39.0 2.9E+02 0.0063 25.2 9.7 50 1382-1435 1-53 (66)
477 COG4148 ModC ABC-type molybdat 39.0 4E+02 0.0086 32.1 12.5 119 1162-1331 230-349 (352)
478 KOG4078 Putative mitochondrial 38.6 55 0.0012 34.2 5.0 53 585-644 82-134 (173)
479 KOG4555 TPR repeat-containing 37.7 2.9E+02 0.0062 29.4 9.9 85 1698-1789 55-144 (175)
480 PF00313 CSD: 'Cold-shock' DNA 36.6 2.7E+02 0.0057 25.5 9.0 49 590-642 2-53 (66)
481 KOG1999 RNA polymerase II tran 36.5 2E+02 0.0044 39.5 10.9 57 667-725 408-467 (1024)
482 cd04322 LysRS_N LysRS_N: N-ter 34.9 1.9E+02 0.004 29.4 8.5 67 1471-1537 3-73 (108)
483 PF11813 DUF3334: Protein of u 34.9 24 0.00052 39.4 2.1 20 773-792 48-67 (229)
484 PRK09890 cold shock protein Cs 34.7 1.2E+02 0.0026 28.5 6.4 51 1472-1526 5-57 (70)
485 COG2976 Uncharacterized protei 34.5 7.5E+02 0.016 28.3 16.0 123 1665-1791 65-190 (207)
486 PF13176 TPR_7: Tetratricopept 33.4 68 0.0015 25.6 4.0 26 1689-1714 2-27 (36)
487 KOG1004 Exosomal 3'-5' exoribo 33.3 1.2E+02 0.0026 34.4 7.0 59 496-556 63-122 (230)
488 PRK10943 cold shock-like prote 32.2 1.6E+02 0.0034 27.6 6.7 51 1381-1435 3-56 (69)
489 KOG2003 TPR repeat-containing 32.1 3.8E+02 0.0083 33.6 11.4 135 1668-1809 540-675 (840)
490 PF12862 Apc5: Anaphase-promot 32.0 1.5E+02 0.0033 29.2 7.1 69 1742-1810 17-92 (94)
491 TIGR02568 LcrE type III secret 32.0 7.4E+02 0.016 29.2 13.9 115 1671-1787 77-197 (240)
492 COG5187 RPN7 26S proteasome re 31.8 4.7E+02 0.01 31.4 11.6 99 1686-1791 115-223 (412)
493 TIGR03504 FimV_Cterm FimV C-te 31.5 67 0.0015 27.4 3.7 27 1764-1790 3-29 (44)
494 KOG0550 Molecular chaperone (D 31.2 4.5E+02 0.0098 33.1 11.9 134 1666-1802 217-365 (486)
495 PRK14998 cold shock-like prote 31.0 1.3E+02 0.0028 28.5 6.0 50 1473-1526 3-54 (73)
496 KOG0890 Protein kinase of the 30.7 2.7E+02 0.0058 42.2 11.5 111 1687-1806 1671-1801(2382)
497 PF03459 TOBE: TOBE domain; I 30.5 1E+02 0.0022 27.9 5.2 49 876-924 5-57 (64)
498 PRK10943 cold shock-like prote 30.3 1.6E+02 0.0034 27.6 6.4 51 588-642 3-56 (69)
499 PRK04012 translation initiatio 30.1 2.2E+02 0.0048 28.8 7.7 70 1466-1540 17-86 (100)
500 KOG3064 RNA-binding nuclear pr 30.0 30 0.00065 39.8 1.8 73 1567-1646 194-270 (303)
No 1
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=100.00 E-value=4.8e-185 Score=1718.34 Aligned_cols=1519 Identities=35% Similarity=0.507 Sum_probs=1187.8
Q ss_pred cCCCCCCCCCcCCCCCCCCCCchhhhhhhhh--hcccccccccc---c--ccccccccccccccccccccccCCccCCCc
Q 000227 43 LALPPDDDVPVFPRGGGHSLTQRERDEIHAE--VDAEFEAVERG---L--HKKNKKKKKKTERKANETVDDLGSLFGDGI 115 (1826)
Q Consensus 43 ~~~~~~~~e~~FPRGg~~~lt~~e~~~~~~~--~d~lf~~~~~~---~--~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1826)
..+...+++++|||||+|.|||+|++++..| .|.+|+....+ . .+++++.++..++-+. .++...
T Consensus 27 ~~l~~~t~~~~fprgg~s~lt~~e~~kv~~E~~~e~l~~~~~vke~~~~~~~~~k~vk~~~s~~s~--------~~~~~~ 98 (1710)
T KOG1070|consen 27 SSLKRKTAAPDFPRGGASKLTPLEIEKVEEEAFIEGLTGFGVVKEVFDDGRPKKKTVKKSASKVSK--------KFTENF 98 (1710)
T ss_pred ccccccccccccccccccccChHHHHHHHHHHHhhhhhcccceecccCCCCccccccccchhhHHH--------hhhccc
Confidence 3446677899999999999999999999554 45555532111 0 1111111111111010 000011
Q ss_pred CCCCCceeeccccCCcCcCcEEEEEEEEEecccEEEEcCCCcEEEEeccccCchhhhcccccccCCCCCccccCCCEEEE
Q 000227 116 SGKLPRYANKITLKNISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSC 195 (1826)
Q Consensus 116 ~~~~~~~ve~l~~k~l~~G~~vlG~V~~i~~~~l~vsLp~~l~G~v~~t~is~~~~~~~~~~~~~~~L~~~f~vGq~v~~ 195 (1826)
...-+..+++++|++++|||+|||+|++|+..|+.+|+|++|+|||+.+++|+.+
T Consensus 99 ~~~k~~~~~~~~~k~isPG~~llgvIs~i~~~Dl~isv~~~l~g~v~~t~lS~~~------------------------- 153 (1710)
T KOG1070|consen 99 NEEKPEIINAFQLKNISPGMLLLGVISKINGNDLKISVKGGLNGYVLNTHLSDEM------------------------- 153 (1710)
T ss_pred cccchhhhhhccccccCCcceeeeeeeeccccceeEEccCcccccccccccCHhH-------------------------
Confidence 1112556899999999999999999999999999999999999999999999862
Q ss_pred EEEEEecCccccceeEEEEecchhhhccCCCcccccCCcEEEEEEEEEeeceEEEEeCCCCeEEEeeCCCCCcCCCCCCC
Q 000227 196 IVLQLDDDKKEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVK 275 (1826)
Q Consensus 196 ~V~~~~~~~~~~~~~~i~LSl~p~~vn~~l~~~~l~~G~~l~~~V~svEDhG~ild~Gi~~~~gFl~~~~~~~~~~~~l~ 275 (1826)
+.+||.|.+.|.|+||||+++|+|++..+||+...+++.. +..|+
T Consensus 154 ----------------------------------~~~~~~l~~~v~S~ed~g~~l~~g~~~~~~~~e~~q~pn~-~~~lK 198 (1710)
T KOG1070|consen 154 ----------------------------------LAAGEVLDTAVVSIEDHGAILDVGLDEITGFIEKSQFPNL-GAKLK 198 (1710)
T ss_pred ----------------------------------hhhhhhhccccccccccccchhcCCccccchhhhccCchh-hhhcc
Confidence 2357889999999999999999999999999999987632 33799
Q ss_pred CCcEEEEEEEEEcCCCCEEEEecCccccccccccccccccccccCCCceEEEEEEEEecCeEEEEeCCCeEEEEeccccc
Q 000227 276 PGLLLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQ 355 (1826)
Q Consensus 276 ~G~~~~~~V~~~~~~~~~v~ls~~~~~~~~~~~~~~~~~s~~~l~pG~~V~~~V~~V~~~Gl~v~~~~~~~G~v~~~hl~ 355 (1826)
+||+++|+|++++. +.+++|..+..+....+++.++++++.|+|||+|+|.|++|++||+.++|+++|+|+++..||.
T Consensus 199 vGq~l~~~V~k~~s--~~v~ks~~~~~~~t~~~t~~~~~~~~~LvpGt~vqa~V~sv~~~Gi~~dil~~ftG~l~~~hl~ 276 (1710)
T KOG1070|consen 199 VGQWLRVSVTKSTS--ERVVKSTKFVEVLTLNPTSCNGLALNDLVPGTMVQAEVQSVEDHGITLDILNGFTGFLDKKHLP 276 (1710)
T ss_pred cCceEEEEEEeccC--ceEEecccceeeecccchhccccchhhcCCcceEEEEecceecCcEEEEecccccceeehhhCC
Confidence 99999999999875 4888999998888888888899999999999999999999999999999999999999999998
Q ss_pred CCCCCCCccccCCCCCEEEEEEEEEeCCccEEEEeeChhhccCCCCCCCCCCCCEEEeEEEEEEeCCceEEEEcCCCCCc
Q 000227 356 NTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLLHNRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVS 435 (1826)
Q Consensus 356 ~~~~~~~~~~~y~~G~~v~arVl~v~~~~k~v~LSl~p~~~~~~~~~~~~~~G~iv~~~~V~~v~~~~Gl~v~i~~~~~~ 435 (1826)
+++ .|..|+...|.|+. +..+ ...++.++.+....+... |+..-++.
T Consensus 277 ~~~-------~~~~~~~~l~~vi~--~s~R-------------------v~~~~f~~ka~ki~~l~~-~v~ai~p~---- 323 (1710)
T KOG1070|consen 277 PFL-------RYFENQEKLGKVIH--KSDR-------------------VFVVDFFDKASKILVLKA-GVDAIAPS---- 323 (1710)
T ss_pred chh-------hccccHHHhhcccc--hhhh-------------------eeeechhhccceEEEecC-ccceEccC----
Confidence 764 48888888877532 2222 222344444444444443 44444432
Q ss_pred cceeeeccchhhHHHHhhhhhccCCCEEEEEEEEEEeCCCeEEEEeccccccccccccccCCCCcEEEEEEEEEecCcEE
Q 000227 436 TPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAI 515 (1826)
Q Consensus 436 v~gfv~~s~~~~~~v~~~~~~~~vG~~~~~rVi~~~~~d~~~~ls~k~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~G~~ 515 (1826)
+.+. +-. ...++.|.+++|||+++..+|.++..+++.+.++.++..+.+++||.++.+.+ .+.++
T Consensus 324 -------~~~~---~~~-~e~~k~G~~~K~~vi~~~~~~~~~~~tl~~s~ie~k~~~~s~V~~r~l~~~~~-svdt~--- 388 (1710)
T KOG1070|consen 324 -------RIEK---VLS-FEIFKIGNKVKCRVIDVLQMDSLALFTLKESAIEGKFSLVSDVSPRGLLKKPV-SVDTE--- 388 (1710)
T ss_pred -------Cccc---ccc-hhhcccCceEEEEEEEEeeccceEEeecchhhccCceEEEeccCCceEEEecc-cCChh---
Confidence 1111 011 12489999999999999999999999999999999999999999999999998 77665
Q ss_pred EEeCCCeEEeecCCCcccccccCCCCCcCCCCEEEEEEEEEeCCeEEEEecchhhccchhhccccccccCCcEEEEEEEE
Q 000227 516 VQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGVKSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITK 595 (1826)
Q Consensus 516 V~i~~~v~G~Vp~~hlsd~~l~~p~~~fkvG~~Vk~rVL~v~~~~i~LSlK~~Lv~~~~~~~~s~~~~~~G~~~~G~V~~ 595 (1826)
..|++|+.|++++...+|+.+|..|..|.||||.+..+.+.+|+| .+..+++|.++.|.++.+ ..+|++.+
T Consensus 389 ------~~~l~~L~hv~~f~~a~p~~~~~~~~di~~~vl~~~ak~~~vt~~-v~~~sK~pvis~y~~~~~--~t~~~l~~ 459 (1710)
T KOG1070|consen 389 ------EVGLSPLPHVLGFEYADPSKKISDGKDIGFRVLTCKAKCGSVTLK-VLCVSKLPVISMYADAVK--LTHGMLSK 459 (1710)
T ss_pred ------hhhccccchhhceeecCCCcccccccceeeEEeeccceeeeeeee-eeEeecCcceEEEeeccc--cCcchhhc
Confidence 679999999999999999999999999999999999899999999 999999999999998877 77888887
Q ss_pred EecceEEEEEcCCeEEEEeCcccCCCCCCCCCCCccCCCEEEEEEEEEccCCCEEEEEEeeCCCCCcccccccCCCEEEE
Q 000227 596 IEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSEDDLVKLGSLVSG 675 (1826)
Q Consensus 596 i~~~G~~V~~~~gv~G~vp~sel~~~~~~~~~~~~~vGq~V~vrVl~vd~~~~ri~lS~k~~~~~~~~~~~~~vG~iv~g 675 (1826)
+. .|++|+-+++.....++-.+|.+|+.+.|++.. ..+.+++ ....++++|++|+|
T Consensus 460 v~------------q~~v~~~e~~te~~~rv~~v~~v~~v~~v~~~~-----svl~lk~-------~~~nDI~iG~~V~~ 515 (1710)
T KOG1070|consen 460 VP------------QGMVPIYEVGTEVKSRVWQVFYVGKVVIVSVRE-----SVLGLKF-------LRVNDIEIGQLVPG 515 (1710)
T ss_pred cc------------cCCCCceecCCcccCccceecccCcEEEEEEeh-----Hhhcccc-------cccccccccceeee
Confidence 76 667776666655555555566666665555541 2222222 23456999999999
Q ss_pred EEEEEecCeEEEEEEecCceEEEeeCcccccccccccccccccCCCCEEEEEEEeecCCCeEEEecccccccccccCCCc
Q 000227 676 VVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQLPSD 755 (1826)
Q Consensus 676 ~V~~v~~~g~~V~l~~~~~v~G~i~~~hLsd~~~~~~~l~~~lk~G~~i~~vl~id~~~~~v~ls~K~sl~~~~~~i~~~ 755 (1826)
+|..+++.|+.|.+. .++++|+||..||+|++.+.+....++..|.++ |||+++.+.+++.||+|++|++-..++|.+
T Consensus 516 ~I~~vt~~Gv~v~v~-~~ni~g~lp~~hlsd~~~~~p~~~f~v~~~~k~-RVl~~~~~~~~v~l~~K~slv~~~~plp~d 593 (1710)
T KOG1070|consen 516 VIRKVTPQGVEVLVT-FGNIKGVLPKEHLSDHPLQPPLRDFKVGSGVKL-RVLSVNRDRNRVALTLKKSLVNTQLPLPSD 593 (1710)
T ss_pred EEEEecCCcEEEEEe-cCceeeecChHhhhhcccccccceeeeccccEE-EEEEEEccCCeeEEEechhhhcccCCCccc
Confidence 999999999999995 367999999999999999999888888888888 899999999999999999999998899999
Q ss_pred cccCCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEeccccc
Q 000227 756 ASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1826)
Q Consensus 756 ~~~~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~~~ 835 (1826)
|+++++|++++|+|+++.++||||+|+||++||+|.+++++.++.+++++|.+||||.|+|.++|++++||.|+++++.|
T Consensus 594 ~~~~~pg~~~~G~l~~~~~~g~~V~F~g~lsGf~p~s~~sd~~v~~~~ehf~vGqTv~~~i~nvd~ek~rm~l~~r~s~~ 673 (1710)
T KOG1070|consen 594 FEQAIPGKITKGTLCAIKENGAFVTFTGGLSGFAPVSEMSDDFVLSDSEHFPVGQTVRAKIVNVDDEKRRMPLGLRASSC 673 (1710)
T ss_pred hhhcCCCceEEEEEeeeccCCeEEEecCccccccchhhhhhhhhcChhhhcccccEEEEEEEecCchhceeehhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcchhhHHHHHHHHHHHHhhcccCCCcccccccccCCCcEEEEEEEEEecCceEEEecccCceEEEEeeeccCCcccc
Q 000227 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVE 915 (1826)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vG~~V~g~V~~i~~~Gv~v~l~~~~~v~g~i~~~~ls~~~~~ 915 (1826)
+.++..+..+||..- .+..+...+... ..-|..-...|-.--|++....+-++++....-+.+.+..+.. .+.
T Consensus 674 ~~a~~~~~~e~~~~g-~v~s~~~~~~tk-d~viVei~~~~~~~v~~~~~L~dg~v~~~~~~~~kl~~~t~~~-----~lv 746 (1710)
T KOG1070|consen 674 ARACVKRSVENFVKG-GVKSLKSIDKTK-DSVIVEIVDQGITGVGVFGELVDGSVVVNKVLENKLRKNTSLL-----HLV 746 (1710)
T ss_pred HHHHHHHHHHHhhcc-ccccceeehhcc-ccEEEEccCcceEEEEEEEEEccCceEEccchhhhhhhcchhh-----eee
Confidence 766666666666543 333332211111 1122233333333333333333333332222111222222222 278
Q ss_pred CCCeEEEEEEEeecccCEEEEeehHhhhhhhhhhchhhHHhhhhhccccccccCCCCEEEEEEEEEEccEEEEEecCCCc
Q 000227 916 SGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREASKDLGVHQTVNAIVEIVKENYLVLSLPEYNH 995 (1826)
Q Consensus 916 ~G~~v~~~Vl~vd~~~~~v~lS~k~~lv~~~~~~~~~~~~~~~~~~~~~~~~L~~G~~v~g~V~~i~~~~v~vsl~~~~~ 995 (1826)
+|+.+.++|++++..++.+.+++++.|.... .+|..|....|+|.++..+++|+++. +.
T Consensus 747 ~gq~~~~~i~~isl~k~lv~~s~~~~L~~~~-------------------~~l~k~~~~~~~v~~is~~~~~~a~~--~~ 805 (1710)
T KOG1070|consen 747 VGQVTVGVILSISLKKSLVLISLCTDLPNNA-------------------TKLLKGSYALALVRSISKEGKFVAFV--SN 805 (1710)
T ss_pred ecceeEEEEEEeehhhhhhhccccccccchH-------------------HHHhcCchhHHHHHhhhhheeheeec--cc
Confidence 9999999999999999999999988876543 23667778889999999999999995 55
Q ss_pred eEEEEeccccc-ccCCCcccccCCCEEEEEEEeecCC-----------CcccceeeeeccccccccchhHHhhcccCCCC
Q 000227 996 SIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALPSS-----------STAGRLLLLLKAISETETSSSKRAKKKSSYDV 1063 (1826)
Q Consensus 996 ~~g~~~~~~~n-~~~~~~~~f~vGq~v~a~V~~~~~~-----------~~~~~l~Ll~~~~~~~~~~~~~~~~~~~~~~~ 1063 (1826)
++++++.+|.+ +...+......||++.++...+... ...++..+........+-+...+.++.+++.+
T Consensus 806 ~i~~v~~s~~v~s~~~d~~~~~y~Q~v~~~~~st~~~~~~~~~a~e~p~~K~~~~~~~~~~~~~d~~Vd~a~k~~~~~~i 885 (1710)
T KOG1070|consen 806 LIALVKVSHLVDSELDDLTKAEYGQSVTVKLLSTEPKVVKDLKAVEKPKKKKEKKFIKVSSNDSDNEVDLAIKSTEDLSI 885 (1710)
T ss_pred ccceeeccccccccccccceeeeecccceEEEecChhHHHHHHhhcchhhccceeEEEeccccCCCccccccccccceee
Confidence 99999999987 5555667777789999999887621 01111111111110111222335677899999
Q ss_pred CCEEEEEEEEEeCCeEEEEeCCCeeEEEEceeccCCcccccccccccccCCCEEEEEEEeee-cC----C-CCccceeEE
Q 000227 1064 GSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS-NK----P-DMKKSFLWE 1137 (1826)
Q Consensus 1064 G~~v~~~V~~ik~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~P~~~~~~G~~v~~~Vl~~~-~~----~-~~~k~~~ve 1137 (1826)
|.+|.|+|++|+++||+|.|+.+.+||||++|++|++.++.. |+++|++|+.|.|||+|.| .+ + ...+..++|
T Consensus 886 gsiv~a~v~svKp~~L~v~l~~~~~gri~isev~d~~~eitD-p~~k~~vG~~I~vrviG~~D~k~lpith~i~k~~v~E 964 (1710)
T KOG1070|consen 886 GSIVRAYVKSVKPDQLNVLLAANHHGRIHISEVLDNLHEITD-PLDKFKVGDGIFVRVIGGHDVKDLPITHLISKEQVLE 964 (1710)
T ss_pred eeEEEEEEeeecccceEEeccccccCceehHHhhccccccCC-hhhhcccCCeEEEEEEcCCccccCccccccchhhhhh
Confidence 999999999999999999999999999999999999876555 9999999999999999996 11 1 223468999
Q ss_pred EeeccccccccccccccccccccCCCCCEEEEEEEEEeCCEEEEEECCCceEEEEccccCCCCchhhhhccccCCCCEEE
Q 000227 1138 LSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVT 1217 (1826)
Q Consensus 1138 LS~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~V~i~~~~~g~l~~~~~s~~~~~l~~~~~~f~vG~~v~ 1217 (1826)
||+||+.++.... .. -+..+++.||+|+|||+++..+|+|+.++|.++||||+++++.+.+.+++|+..|++|++++
T Consensus 965 lSvkps~les~~~-~t--~s~~q~~~gq~vtGfV~nv~ke~~w~~isp~v~~RIplld~s~~~~~le~~e~~F~~g~al~ 1041 (1710)
T KOG1070|consen 965 LSVKPSELESDEF-NT--TSTKQFKAGQEVTGFVNNVSKEWLWVRISPFVDGRIPLLDTSLDLHVLELPESLFPLGKALD 1041 (1710)
T ss_pred hccChhhhccccc-cc--cchhhhhcCCeEEEEEEccccceeEEEccccccceeeeeeccchhhhhhCchhhccccccee
Confidence 9999999984331 11 11125799999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCcEEEEEecccccCCCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEECCceEEEEecc-cccc
Q 000227 1218 GHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFT-ELKN 1296 (1826)
Q Consensus 1218 v~V~~vd~~~~~l~LS~~~~~~~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~s-el~d 1296 (1826)
++|+..+..+-...++.... ... ..+|+++.|+|.++.++ ++.++++.++.|+++.+ +++|
T Consensus 1042 ~~V~~~~~~~tv~~iG~~~~-----------~k~-----~s~G~~l~Grv~kv~~~--~~~l~~~~~~~G~~~~i~~~~d 1103 (1710)
T KOG1070|consen 1042 EYVVRNDKSKTVRAIGFSKS-----------DKN-----PSPGDILFGRVSKVLPG--YLILQLPFKVFGRVSFIEDMSD 1103 (1710)
T ss_pred eEEecccceeEEEecccccC-----------CCC-----CCcchhhcceeeeeccc--eeEEecCCccccceEEeeehhc
Confidence 99999873322222221111 011 12899999999999999 89999999999977777 9999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecccCCceEEEEEeeeccCCCCCCCCCCCCCCCCCCcccccccccC
Q 000227 1297 ICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376 (1826)
Q Consensus 1297 ~~~~~~~~~~~~~~~~p~~~f~~G~~V~~~Vl~id~~~~g~~~i~LS~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1376 (1826)
+|... |...|..++.+.|++|.++.. ++.++||+|.+++.+.. ....++.+.+++++
T Consensus 1104 ~~~~~-----------P~~~f~~~~~v~~~~L~vs~~---n~~leLslr~sr~~~t~---------~~~kd~~iks~eDl 1160 (1710)
T KOG1070|consen 1104 SYSMT-----------PVEHFTKIQIVYVCVLSVSAL---NKGLELSLRESRTKITP---------VDSKDGSIKSIEDL 1160 (1710)
T ss_pred cccCC-----------hHHhcccccEEEEEEEEEecc---cccceeecccccccCcc---------ccccCCcccchhhc
Confidence 99887 999999999999999999986 44599999998843222 23467889999999
Q ss_pred CCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEecccccccc
Q 000227 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTAS 1456 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~~~~~~ 1456 (1826)
++|++++|||.++.++|+||.|++++.|+++++++++.|.+.|++.|++||+|.++|+++++..+|++||||++......
T Consensus 1161 k~g~iv~G~V~nv~~~glfi~ls~~v~a~v~is~~~ds~~k~w~k~~~~gklv~~rv~~ve~~s~riel~Lk~s~~~d~~ 1240 (1710)
T KOG1070|consen 1161 KIGDIVRGFVKNVETKGLFIALSRKVEAFVPISGLSDSFEKEWEKHLPVGKLVTGRVLSVEEDSKRIELSLKNSDIKDTV 1240 (1710)
T ss_pred ccCceeEEEEEEecCCcEEEEEccceEEEEEccccccchhhhhhccCCccceeeeEEEEeeccCceEEEEEeccccCCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876433
Q ss_pred ccccccccccCCCCEEEEEEEEEeeceEEEEEecC-ceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEE
Q 000227 1457 QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1535 (1826)
Q Consensus 1457 ~~~~~~~~~~~~G~iv~G~V~~v~~~GvFV~l~~~-~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~ 1535 (1826)
. ....+.++++||.+.|+|.++.+||+||+++++ ++.|+||++++++.+.++....|..|++|+|.+++++.+++||+
T Consensus 1241 ~-~~~~~~~l~~gd~~~g~v~~~~~~G~fi~l~~tv~~~g~~~~~e~~d~~~e~it~~~~~~~~V~a~~lk~~~ek~rIs 1319 (1710)
T KOG1070|consen 1241 K-LLKDSKDLKKGDREDGTVEVVDPFGLFIKLDVTVNMVGLCHISEEADDRGENITALYYAGDRVKACVLKEDSEKKRIS 1319 (1710)
T ss_pred h-hhhhhhhhhccccccceEEEecCCceEEEecCcceecccccceeecchhhhhcccceeccceeeeEeeeccchhhhhh
Confidence 3 344578999999999999999999999999987 68999999999999999999999999999999999999999999
Q ss_pred EeeeccccCCCccccccCcccchhHHHHhhcccCcccccc---cCccccccccCcccCCCc-ccccccccccCCCCc-cc
Q 000227 1536 LGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLE---NSSVAVQDMDMESEDGGS-LVLAQIESRASVPPL-EV 1610 (1826)
Q Consensus 1536 LslK~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~l-~~ 1610 (1826)
+++|.+||..+++.-..+. .++.-+ +.....++|. +...+|.+.+ .+..+. -.....+..+..|++ +-
T Consensus 1320 l~~k~s~~~~~dd~~~~~~-~~e~v~----~~~~~~~d~~s~~~~~~~d~g~q--~~~~g~~~e~~~d~~~~~~p~~le~ 1392 (1710)
T KOG1070|consen 1320 LGLKSSYLSSEDDARITSY-GEEGVE----MEEESHSDPKSMEEVAAEDPGFQ--SSSGGFNLEDAVDEMSETLPDALED 1392 (1710)
T ss_pred hhhhhhccCChhhhhcccc-cccCcc----hhcccccCccchhhhcccCCCcc--ccccceehhhhhhhccccCCchhhh
Confidence 9999999966543221100 000000 0000000000 0000000000 000000 000111222223333 22
Q ss_pred c-CCCCCCCcCcC-CCCCCCCcccccchhhhhhhhhhhHhHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHhCCCchhH
Q 000227 1611 N-LDDEQPDMDNG-ISQNQGHTDEAKTIDEKNNRHAKKKEKEEREQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFV 1688 (1826)
Q Consensus 1611 ~-w~~~~~~~~~~-~~~~~~~~~~~~~~~kk~~~~~k~~~k~~~e~~~~~~~~~~~~~~~p~s~~~fer~l~~~p~ss~l 1688 (1826)
+ |++++.|+.-+ ...++|+++ ++++..++++|+.....++++++ ++|+|++||+|+++++||||.+
T Consensus 1393 s~~td~e~d~~~~~~e~~qde~d-----------ee~e~~kee~e~~~~~~e~~dl~-~~pesaeDferlvrssPNSSi~ 1460 (1710)
T KOG1070|consen 1393 SCETDSEVDEEVEDEELDQDEKD-----------EEKEKDKEEREENRSDEEERDLS-RAPESAEDFERLVRSSPNSSIL 1460 (1710)
T ss_pred cccchhhhhhccccccccccccc-----------hhhhhhhhhccccccchhhcccc-cCCcCHHHHHHHHhcCCCcchH
Confidence 2 77655543111 111111111 12222233444455666666766 8999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 000227 1689 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLG 1768 (1826)
Q Consensus 1689 Wi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~~~kv~~~~~~ 1768 (1826)
||+||+|+++++||++||+||||||+||||||++||+|||+||+|||+.|| ++|++.++|+||||||++++||++++.
T Consensus 1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG--~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG--TEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC--cHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1769 LYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1769 i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
||..++++++|.|+|+.|+|||++..++|++|+.|++++-.
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH
Confidence 99999999999999999999999999999999999998754
No 2
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=100.00 E-value=3e-102 Score=974.30 Aligned_cols=1436 Identities=21% Similarity=0.233 Sum_probs=1018.9
Q ss_pred ceeeccccCCcCcCcEEEEEEEEEecccEEEEcC-CCcEEEEeccccCchhhhcccccccCCCCCccccCCCEEEEEEEE
Q 000227 121 RYANKITLKNISAGMKLWGVVAEVNEKDLVICLP-GGLRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQ 199 (1826)
Q Consensus 121 ~~ve~l~~k~l~~G~~vlG~V~~i~~~~l~vsLp-~~l~G~v~~t~is~~~~~~~~~~~~~~~L~~~f~vGq~v~~~V~~ 199 (1826)
+...+||-..+.+||.+-+.|.+|.+++-++... ..++|++-. | +...|..+|++||||||.|++
T Consensus 144 v~~t~lS~~~~~~~~~l~~~v~S~ed~g~~l~~g~~~~~~~~e~---~-----------q~pn~~~~lKvGq~l~~~V~k 209 (1710)
T KOG1070|consen 144 VLNTHLSDEMLAAGEVLDTAVVSIEDHGAILDVGLDEITGFIEK---S-----------QFPNLGAKLKVGQWLRVSVTK 209 (1710)
T ss_pred ccccccCHhHhhhhhhhccccccccccccchhcCCccccchhhh---c-----------cCchhhhhcccCceEEEEEEe
Confidence 3467899999999999999999999999988873 112222211 1 123577899999999999998
Q ss_pred EecCc-cccceeEEEEecchhhhccCCCcccccCCcEEEEEEEEEeeceEEEEeCCCCeEEEeeCCCCCcCCCCCCCCCc
Q 000227 200 LDDDK-KEIGKRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGL 278 (1826)
Q Consensus 200 ~~~~~-~~~~~~~i~LSl~p~~vn~~l~~~~l~~G~~l~~~V~svEDhG~ild~Gi~~~~gFl~~~~~~~~~~~~l~~G~ 278 (1826)
..... .+..++++++++.|...| +|..++|.|||+++|.|+||||||+++|| +.+++|||+++++++.. .+.+||
T Consensus 210 ~~s~~v~ks~~~~~~~t~~~t~~~-~~~~~~LvpGt~vqa~V~sv~~~Gi~~di-l~~ftG~l~~~hl~~~~--~~~~~~ 285 (1710)
T KOG1070|consen 210 STSERVVKSTKFVEVLTLNPTSCN-GLALNDLVPGTMVQAEVQSVEDHGITLDI-LNGFTGFLDKKHLPPFL--RYFENQ 285 (1710)
T ss_pred ccCceEEecccceeeecccchhcc-ccchhhcCCcceEEEEecceecCcEEEEe-cccccceeehhhCCchh--hccccH
Confidence 76521 111378999999999999 89999999999999999999999999999 79999999999998766 688999
Q ss_pred EEEEEEEEEcCCCCEEEEecCccccccccccccccccccccCCCceEEEEEEEEecCeEEEEeCCCeEEEEecccccCCC
Q 000227 279 LLQGVVRSIDRTRKVVYLSSDPDTVSKCVTKDLKGISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTF 358 (1826)
Q Consensus 279 ~~~~~V~~~~~~~~~v~ls~~~~~~~~~~~~~~~~~s~~~l~pG~~V~~~V~~V~~~Gl~v~~~~~~~G~v~~~hl~~~~ 358 (1826)
.++|.|+..+ .|++.+.... -+++... -..+++++.||..++..+..+...|..+++.+--.+.++..|+....
T Consensus 286 ~~l~~vi~~s--~Rv~~~~f~~--ka~ki~~--l~~~v~ai~p~~~~~~~~~e~~k~G~~~K~~vi~~~~~~~~~~~tl~ 359 (1710)
T KOG1070|consen 286 EKLGKVIHKS--DRVFVVDFFD--KASKILV--LKAGVDAIAPSRIEKVLSFEIFKIGNKVKCRVIDVLQMDSLALFTLK 359 (1710)
T ss_pred HHhhcccchh--hheeeechhh--ccceEEE--ecCccceEccCCcccccchhhcccCceEEEEEEEEeeccceEEeecc
Confidence 9999987643 6777665521 1111111 13468899999999999999999999999988888889999988654
Q ss_pred CCCCccccCCCCCEEEEEEEEEeCC---ccEEEEeeChhhccCCC--CC----CCCCCCCEEEeEEEEEEeCCceEEEEc
Q 000227 359 PTTNWKNDYNQHKKVNARILFVDPT---SRAVGLTLNPYLLHNRA--PP----SHVKVGDIYDQSKVVRVDRGLGLLLDI 429 (1826)
Q Consensus 359 ~~~~~~~~y~~G~~v~arVl~v~~~---~k~v~LSl~p~~~~~~~--~~----~~~~~G~iv~~~~V~~v~~~~Gl~v~i 429 (1826)
..+++.+|..+.-|++|++..-|. +-.++++-+||+..+.. |. ....+|..+-.|.+....-.+++++..
T Consensus 360 -~s~ie~k~~~~s~V~~r~l~~~~~svdt~~~~l~~L~hv~~f~~a~p~~~~~~~~di~~~vl~~~ak~~~vt~~v~~~s 438 (1710)
T KOG1070|consen 360 -ESAIEGKFSLVSDVSPRGLLKKPVSVDTEEVGLSPLPHVLGFEYADPSKKISDGKDIGFRVLTCKAKCGSVTLKVLCVS 438 (1710)
T ss_pred -hhhccCceEEEeccCCceEEEecccCChhhhhccccchhhceeecCCCcccccccceeeEEeeccceeeeeeeeeeEee
Confidence 357889999999999999998772 33899999999987543 32 456777777777777666555666665
Q ss_pred CCCCCccceeeeccchhhHHHHhhh----hhccCCCEEEEEEEEEEeCCCeEEEEeccccccccccccccCCCCcEEEEE
Q 000227 430 PSTPVSTPAYVTISDVAEEEVRKLE----KKYKEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKPGMVVKGK 505 (1826)
Q Consensus 430 ~~~~~~v~gfv~~s~~~~~~v~~~~----~~~~vG~~~~~rVi~~~~~d~~~~ls~k~~~~~~~~~~~~~l~~G~iv~g~ 505 (1826)
.. +.+.+|++...+.+..+...+ ..|++|+++.|||.+|.+.+..++|++.++++..++++.+||+.|++|.|+
T Consensus 439 K~--pvis~y~~~~~~t~~~l~~v~q~~v~~~e~~te~~~rv~~v~~v~~v~~v~~~~svl~lk~~~~nDI~iG~~V~~~ 516 (1710)
T KOG1070|consen 439 KL--PVISMYADAVKLTHGMLSKVPQGMVPIYEVGTEVKSRVWQVFYVGKVVIVSVRESVLGLKFLRVNDIEIGQLVPGV 516 (1710)
T ss_pred cC--cceEEEeeccccCcchhhccccCCCCceecCCcccCccceecccCcEEEEEEehHhhcccccccccccccceeeeE
Confidence 43 235789998887776665542 359999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCcEEEEeCCC-eEEeecCCCcccccccCCCCCcCCCCEEEEEEEEE--eCCeEEEEecchhhccchhhcccccc
Q 000227 506 VIAVDSFGAIVQFPGG-VKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSYAE 582 (1826)
Q Consensus 506 V~~v~~~G~~V~i~~~-v~G~Vp~~hlsd~~l~~p~~~fkvG~~Vk~rVL~v--~~~~i~LSlK~~Lv~~~~~~~~s~~~ 582 (1826)
|.++++.|+.|.+..+ |.|++|..|++|.++..|+..|++|..+++|||.+ +.+++.||+|++|++..+|...+|++
T Consensus 517 I~~vt~~Gv~v~v~~~ni~g~lp~~hlsd~~~~~p~~~f~v~~~~k~RVl~~~~~~~~v~l~~K~slv~~~~plp~d~~~ 596 (1710)
T KOG1070|consen 517 IRKVTPQGVEVLVTFGNIKGVLPKEHLSDHPLQPPLRDFKVGSGVKLRVLSVNRDRNRVALTLKKSLVNTQLPLPSDFEQ 596 (1710)
T ss_pred EEEecCCcEEEEEecCceeeecChHhhhhcccccccceeeeccccEEEEEEEEccCCeeEEEechhhhcccCCCccchhh
Confidence 9999999999999764 99999999999999999999999999999999999 58999999999999999999999999
Q ss_pred ccCCcEEEEEEEEEecceEEEEEcCCeEEEEeCcccCCCCCCCCCCCccCCCEEEEEEEEEccCCCEEEEEEeeCCCCCc
Q 000227 583 ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVS 662 (1826)
Q Consensus 583 ~~~G~~~~G~V~~i~~~G~~V~~~~gv~G~vp~sel~~~~~~~~~~~~~vGq~V~vrVl~vd~~~~ri~lS~k~~~~~~~ 662 (1826)
++||++++|+|..+.++||||+|+||++||+|.++|+..++.+++++|.+||+|.+.|+++|++++||.+||+.+++...
T Consensus 597 ~~pg~~~~G~l~~~~~~g~~V~F~g~lsGf~p~s~~sd~~v~~~~ehf~vGqTv~~~i~nvd~ek~rm~l~~r~s~~~~a 676 (1710)
T KOG1070|consen 597 AIPGKITKGTLCAIKENGAFVTFTGGLSGFAPVSEMSDDFVLSDSEHFPVGQTVRAKIVNVDDEKRRMPLGLRASSCARA 676 (1710)
T ss_pred cCCCceEEEEEeeeccCCeEEEecCccccccchhhhhhhhhcChhhhcccccEEEEEEEecCchhceeehhhhhhhhHHH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999999998876321
Q ss_pred ----ccccccCCCEEEEEEEEEecCeEEEEEEecCceEEEeeCccccccc-cccccccccc---------CCCCEEE-EE
Q 000227 663 ----EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHL-EHATVMKSVI---------KPGYEFD-QL 727 (1826)
Q Consensus 663 ----~~~~~~vG~iv~g~V~~v~~~g~~V~l~~~~~v~G~i~~~hLsd~~-~~~~~l~~~l---------k~G~~i~-~v 727 (1826)
..+.+..|.+..+.+.+++.+.++|++. ..++.|++...||.|.. ..+..+.+++ -+|+.+. .+
T Consensus 677 ~~~~~~e~~~~g~v~s~~~~~~tkd~viVei~-~~~~~~v~~~~~L~dg~v~~~~~~~~kl~~~t~~~~lv~gq~~~~~i 755 (1710)
T KOG1070|consen 677 CVKRSVENFVKGGVKSLKSIDKTKDSVIVEIV-DQGITGVGVFGELVDGSVVVNKVLENKLRKNTSLLHLVVGQVTVGVI 755 (1710)
T ss_pred HHHHHHHHhhccccccceeehhccccEEEEcc-CcceEEEEEEEEEccCceEEccchhhhhhhcchhheeeecceeEEEE
Confidence 3366788988899999999999999993 35799999999999832 3333333333 3455555 44
Q ss_pred EEeecCCCeEEEecccccccccc--cCCCccccCCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccC
Q 000227 728 LVLDNESSNLLLSAKYSLINSAQ--QLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKT 805 (1826)
Q Consensus 728 l~id~~~~~v~ls~K~sl~~~~~--~i~~~~~~~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~ 805 (1826)
+ .+++|.+++..+. .+|....++..|...+++|.+|...|.||.|.+++.+|++.+++.+....+....
T Consensus 756 ~---------~isl~k~lv~~s~~~~L~~~~~~l~k~~~~~~~v~~is~~~~~~a~~~~~i~~v~~s~~v~s~~~d~~~~ 826 (1710)
T KOG1070|consen 756 L---------SISLKKSLVLISLCTDLPNNATKLLKGSYALALVRSISKEGKFVAFVSNLIALVKVSHLVDSELDDLTKA 826 (1710)
T ss_pred E---------EeehhhhhhhccccccccchHHHHhcCchhHHHHHhhhhheeheeecccccceeecccccccccccccee
Confidence 4 4455555554433 2555566778899999999999999999999999999999999887766665544
Q ss_pred CCCCCEEEEEEEEeeCCCCeEEEEecccccCCCcchhhHHHHHHHHHHHHhhcccCCCcccccccccCCCcEEEEEEEEE
Q 000227 806 YYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHES 885 (1826)
Q Consensus 806 f~vGq~V~~~V~~id~e~~rl~LSlk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vG~~V~g~V~~i 885 (1826)
++ ||.|.|++.++++......++++......
T Consensus 827 ~y-~Q~v~~~~~st~~~~~~~~~a~e~p~~K~------------------------------------------------ 857 (1710)
T KOG1070|consen 827 EY-GQSVTVKLLSTEPKVVKDLKAVEKPKKKK------------------------------------------------ 857 (1710)
T ss_pred ee-ecccceEEEecChhHHHHHHhhcchhhcc------------------------------------------------
Confidence 44 49999999999877666666555432100
Q ss_pred ecCceEEEecccCceEEEEeeeccCCccccCCCeEEEEEEEeecccCEEEEeehHhhhhhhhhhchhhHHhhhhhccccc
Q 000227 886 NDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDRFREANSNRQAQKKKRKREAS 965 (1826)
Q Consensus 886 ~~~Gv~v~l~~~~~v~g~i~~~~ls~~~~~~G~~v~~~Vl~vd~~~~~v~lS~k~~lv~~~~~~~~~~~~~~~~~~~~~~ 965 (1826)
.+. ....+++.....++.++| ..
T Consensus 858 --------------------------------~~~-~~~~~~~~~d~~Vd~a~k------------------------~~ 880 (1710)
T KOG1070|consen 858 --------------------------------EKK-FIKVSSNDSDNEVDLAIK------------------------ST 880 (1710)
T ss_pred --------------------------------cee-EEEeccccCCCccccccc------------------------cc
Confidence 000 000011011112222221 23
Q ss_pred cccCCCCEEEEEEEEEEccEEEEEecCCCceEEEEeccccc----ccCCCcccccCCCEEEEEEEeecCCCcccceeeee
Q 000227 966 KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN----TQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLL 1041 (1826)
Q Consensus 966 ~~L~~G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~n----~~~~~~~~f~vGq~v~a~V~~~~~~~~~~~l~Ll~ 1041 (1826)
.++.+|+.+.|+|..++++.+.|.| .....|.+++++.- .-..|..+|.+|++|.|+|...-+ ...+....
T Consensus 881 ~~~~igsiv~a~v~svKp~~L~v~l--~~~~~gri~isev~d~~~eitDp~~k~~vG~~I~vrviG~~D---~k~lpith 955 (1710)
T KOG1070|consen 881 EDLSIGSIVRAYVKSVKPDQLNVLL--AANHHGRIHISEVLDNLHEITDPLDKFKVGDGIFVRVIGGHD---VKDLPITH 955 (1710)
T ss_pred cceeeeeEEEEEEeeecccceEEec--cccccCceehHHhhccccccCChhhhcccCCeEEEEEEcCCc---cccCcccc
Confidence 5689999999999999999999999 68889999988763 112378899999999999998532 11122221
Q ss_pred ccccc--cccchhH--------HhhcccCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEEceeccCCcccccccccccc
Q 000227 1042 KAISE--TETSSSK--------RAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNF 1111 (1826)
Q Consensus 1042 ~~~~~--~~~~~~~--------~~~~~~~~~~G~~v~~~V~~ik~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~P~~~~ 1111 (1826)
..... .+.+... ..++...|+.|+.|.|-|..+.+..+.|.+...+.|||++-.+.-+. ...++|-+.|
T Consensus 956 ~i~k~~v~ElSvkps~les~~~~t~s~~q~~~gq~vtGfV~nv~ke~~w~~isp~v~~RIplld~s~~~-~~le~~e~~F 1034 (1710)
T KOG1070|consen 956 LISKEQVLELSVKPSELESDEFNTTSTKQFKAGQEVTGFVNNVSKEWLWVRISPFVDGRIPLLDTSLDL-HVLELPESLF 1034 (1710)
T ss_pred ccchhhhhhhccChhhhccccccccchhhhhcCCeEEEEEEccccceeEEEccccccceeeeeeccchh-hhhhCchhhc
Confidence 11000 0111100 12223578999999999999999999999999999998876654221 2247888899
Q ss_pred cCCCEEEEEEEeeecCCCCccceeEEEeeccccccccccccccccccccCCCCCEEEEEEEEEeCCEEEEEECCCceEEE
Q 000227 1112 KIGQTVTARIIAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQL 1191 (1826)
Q Consensus 1112 ~~G~~v~~~Vl~~~~~~~~~k~~~veLS~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~V~i~~~~~g~l 1191 (1826)
..|+.++++|+..+.. .....+-++. .... ..+|++.-|.|..+..+++.|.+....-|+.
T Consensus 1035 ~~g~al~~~V~~~~~~-------~tv~~iG~~~----------~~k~--~s~G~~l~Grv~kv~~~~~~l~~~~~~~G~~ 1095 (1710)
T KOG1070|consen 1035 PLGKALDEYVVRNDKS-------KTVRAIGFSK----------SDKN--PSPGDILFGRVSKVLPGYLILQLPFKVFGRV 1095 (1710)
T ss_pred ccccceeeEEecccce-------eEEEeccccc----------CCCC--CCcchhhcceeeeeccceeEEecCCccccce
Confidence 9999999999987610 0111111100 1111 2589999999999999999999999999977
Q ss_pred Ecc-ccCCCCchhhhhccccCCCCEEEEEEEEEeCCCcEEEEEecccccCC-----CCcccccccccccccccCCCEEEE
Q 000227 1192 FIL-DSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI-----SDKTVDISNDNMQTFIHEGDIVGG 1265 (1826)
Q Consensus 1192 ~~~-~~s~~~~~l~~~~~~f~vG~~v~v~V~~vd~~~~~l~LS~~~~~~~~-----~~~~~~~~~~~~~~~l~~G~iv~g 1265 (1826)
+.. ++++++.. +|...|..++.+.+.++.++...+.+.||++....-. .++-.+..++++ .|+++.|
T Consensus 1096 ~~i~~~~d~~~~--~P~~~f~~~~~v~~~~L~vs~~n~~leLslr~sr~~~t~~~~kd~~iks~eDlk-----~g~iv~G 1168 (1710)
T KOG1070|consen 1096 SFIEDMSDSYSM--TPVEHFTKIQIVYVCVLSVSALNKGLELSLRESRTKITPVDSKDGSIKSIEDLK-----IGDIVRG 1168 (1710)
T ss_pred EEeeehhccccC--ChHHhcccccEEEEEEEEEecccccceeecccccccCccccccCCcccchhhcc-----cCceeEE
Confidence 665 77666542 5677899999999999999988888999988432210 122223345555 9999999
Q ss_pred EEEEEEcCcCeEEEEECCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecccCCceEEEEEee
Q 000227 1266 RISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLR 1345 (1826)
Q Consensus 1266 ~V~~v~~~~~g~~V~l~~~~~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~f~~G~~V~~~Vl~id~~~~g~~~i~LS~r 1345 (1826)
.|..+.+. |+|+.|+.++.+++++++++|++... +...|++|+.+.++|+.++.. .+++.||++
T Consensus 1169 ~V~nv~~~--glfi~ls~~v~a~v~is~~~ds~~k~-----------w~k~~~~gklv~~rv~~ve~~---s~riel~Lk 1232 (1710)
T KOG1070|consen 1169 FVKNVETK--GLFIALSRKVEAFVPISGLSDSFEKE-----------WEKHLPVGKLVTGRVLSVEED---SKRIELSLK 1232 (1710)
T ss_pred EEEEecCC--cEEEEEccceEEEEEccccccchhhh-----------hhccCCccceeeeEEEEeecc---CceEEEEEe
Confidence 99999999 99999999999999999999988776 677899999999999999986 579999999
Q ss_pred eccCCCCCCCCCCCCCCCCCCcccccccccCCCCCEEEEEEEEEecceEEEEeCCCe--EEEEEccccCCCccCCCCccC
Q 000227 1346 SSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKL--DAKVLLSNLSDGYVESPEKEF 1423 (1826)
Q Consensus 1346 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~v--~g~v~iselsd~~v~~~~~~f 1423 (1826)
++.-+ + .........+++.|+...|+|.++.++|+||.+++++ .|++|+++.++....+....|
T Consensus 1233 ~s~~~----d----------~~~~~~~~~~l~~gd~~~g~v~~~~~~G~fi~l~~tv~~~g~~~~~e~~d~~~e~it~~~ 1298 (1710)
T KOG1070|consen 1233 NSDIK----D----------TVKLLKDSKDLKKGDREDGTVEVVDPFGLFIKLDVTVNMVGLCHISEEADDRGENITALY 1298 (1710)
T ss_pred ccccC----C----------chhhhhhhhhhhccccccceEEEecCCceEEEecCcceecccccceeecchhhhhcccce
Confidence 98611 1 0112334567899999999999999999999999977 999999999999999988899
Q ss_pred CCCcEEEEEEEEEeCCCCeEEEEEeccccccccccccccccccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccC
Q 000227 1424 PIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS 1503 (1826)
Q Consensus 1424 ~vGq~V~~kVl~vd~e~~rI~lSlk~s~~~~~~~~~~~~~~~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels 1503 (1826)
..|+.|.+.++..+.+.+||.+.+|.+......+..+.+ ....| +=..-+. .++--.. .
T Consensus 1299 ~~~~~V~a~~lk~~~ek~rIsl~~k~s~~~~~dd~~~~~--~~~e~--------------v~~~~~~--~~d~~s~---~ 1357 (1710)
T KOG1070|consen 1299 YAGDRVKACVLKEDSEKKRISLGLKSSYLSSEDDARITS--YGEEG--------------VEMEEES--HSDPKSM---E 1357 (1710)
T ss_pred eccceeeeEeeeccchhhhhhhhhhhhccCChhhhhccc--ccccC--------------cchhccc--ccCccch---h
Confidence 999999999999999999999999988754322211111 11111 1000000 0000000 0
Q ss_pred cccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeeccccCCCccccccCcccchhHHHHhhcccCcccccccCcccccc
Q 000227 1504 EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKNDADNLQMSSEEESDEAIEEVGSYNRSSLLENSSVAVQD 1583 (1826)
Q Consensus 1504 ~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1583 (1826)
....+++.-.... ....+...--..+.++.+...+.. +.+ ++.|++.+++ +.+.+..+++.+.+-.
T Consensus 1358 ~~~~~d~g~q~~~------~g~~~e~~~d~~~~~~p~~le~s~---~td---~e~d~~~~~~-e~~qde~dee~e~~ke- 1423 (1710)
T KOG1070|consen 1358 EVAAEDPGFQSSS------GGFNLEDAVDEMSETLPDALEDSC---ETD---SEVDEEVEDE-ELDQDEKDEEKEKDKE- 1423 (1710)
T ss_pred hhcccCCCccccc------cceehhhhhhhccccCCchhhhcc---cch---hhhhhccccc-cccccccchhhhhhhh-
Confidence 0000111100011 000000000011111111111000 000 0000000000 0000000000000000
Q ss_pred ccCcc--cCCCcccccccccccCC-------CCccccCCCCCCCcCcCCCCCCCCcccccchhhhhhhhh-hhHh-HHHH
Q 000227 1584 MDMES--EDGGSLVLAQIESRASV-------PPLEVNLDDEQPDMDNGISQNQGHTDEAKTIDEKNNRHA-KKKE-KEER 1652 (1826)
Q Consensus 1584 ~~~e~--~~~~~~~~~~~~~~~~~-------~~l~~~w~~~~~~~~~~~~~~~~~~~~~~~~~kk~~~~~-k~~~-k~~~ 1652 (1826)
...++ ++++-+-....+..++. |.--+-|=.-....-+ -.|.+ ...+--.|. +... ++++
T Consensus 1424 e~e~~~~~~e~~dl~~~pesaeDferlvrssPNSSi~WI~YMaf~Le-----lsEie----kAR~iaerAL~tIN~REee 1494 (1710)
T KOG1070|consen 1424 EREENRSDEEERDLSRAPESAEDFERLVRSSPNSSILWIRYMAFHLE-----LSEIE----KARKIAERALKTINFREEE 1494 (1710)
T ss_pred hccccccchhhcccccCCcCHHHHHHHHhcCCCcchHHHHHHHHHhh-----hhhhH----HHHHHHHHHhhhCCcchhH
Confidence 00000 00000000000010110 1112222100000000 00000 000000000 0000 0000
Q ss_pred HH------------------HHH-HHHHH------------h-----cccCCCCCHHHHHHHHHhCCCchhHHHHHHHHH
Q 000227 1653 EQ------------------EIR-AAEER------------L-----LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFM 1696 (1826)
Q Consensus 1653 e~------------------~~~-~~~~~------------~-----~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~ 1696 (1826)
|+ .+. .-|.+ + ......++.+-|++++..-.+.-.+|++|++|-
T Consensus 1495 EKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fL 1574 (1710)
T KOG1070|consen 1495 EKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFL 1574 (1710)
T ss_pred HHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 00 000 00000 0 012244455666666666678889999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHcCC
Q 000227 1697 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL-QYCDPKKVHLALLGLYERTEQ 1775 (1826)
Q Consensus 1697 l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~-~~~~~~kv~~~~~~i~~~~~~ 1775 (1826)
+++++-++||.+++|||+.+|-++.- .+--.++.||-.|| +.|+.|.+|+..+ .||....+|+-|+..+++.+.
T Consensus 1575 l~~ne~~aa~~lL~rAL~~lPk~eHv---~~IskfAqLEFk~G--DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1575 LRQNEAEAARELLKRALKSLPKQEHV---EFISKFAQLEFKYG--DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred hcccHHHHHHHHHHHHHhhcchhhhH---HHHHHHHHHHhhcC--CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC
Confidence 99999999999999999999986653 46778999999999 8899999999998 788899999999999999999
Q ss_pred hHHHHHHHHHHHHHc--CCC-HHHHHHHHHHHHhcccc
Q 000227 1776 NKLADELLYKMIKKF--KHS-CKVIIELLSFHFTSILS 1810 (1826)
Q Consensus 1776 ~~~a~~~~~~~~kk~--~~~-~~~w~~~~~~~~~~~~~ 1810 (1826)
.+.+|.+|+|++.+- ++. .-+|-.|.+|+-++|+.
T Consensus 1650 ~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 999999999999654 322 33445566666555553
No 3
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.9e-63 Score=599.98 Aligned_cols=491 Identities=23% Similarity=0.278 Sum_probs=438.5
Q ss_pred ccccccCCCceEEEEEEEEecCeEEEEeCCCeEEEEecccccCCCCCCCccccCCCCCEEEEEEEEEeCCccEEEEeeCh
Q 000227 314 ISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNP 393 (1826)
Q Consensus 314 ~s~~~l~pG~~V~~~V~~V~~~Gl~v~~~~~~~G~v~~~hl~~~~~~~~~~~~y~~G~~v~arVl~v~~~~k~v~LSl~p 393 (1826)
.+...+.||+.|.|+|.+|.++++.|++++...|+|+...++.... ...|++|+.+.+.|+.+.+....+.||.+.
T Consensus 14 ~~~~~~~~G~vV~G~Vv~i~~~~v~Vdig~Kseg~ip~~E~~~~~~----~~~~~~gd~v~v~v~~~e~~~g~~~lS~~k 89 (541)
T COG0539 14 KSDEEFEPGDVVKGTVVSIEKDGVLVDIGGKSEGVIPISEFSNEPV----EDVVQVGDEVEVLVLRVEDGEGELVLSRRK 89 (541)
T ss_pred cchhccCCCCEEEEEEEEEeCCeEEEEecCccccEeEHHHhccccc----cceecCCCEEEEEEEEEecCCceEEeeHHH
Confidence 4677899999999999999999999999999999999999986543 237999999999999999988899999987
Q ss_pred hhccCCC--CCCCCCCCCEEEeEEEEEEeCCceEEEEcCCCCCccceeeeccchhhHHHHhhhhhccCCCEEEEEEEEEE
Q 000227 394 YLLHNRA--PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFR 471 (1826)
Q Consensus 394 ~~~~~~~--~~~~~~~G~iv~~~~V~~v~~~~Gl~v~i~~~~~~v~gfv~~s~~~~~~v~~~~~~~~vG~~~~~rVi~~~ 471 (1826)
.-....+ ....+..|.+|+ ++|....++ |+.|++.+ ++||+|.|+++..+++++. -.+|.++.++|+.++
T Consensus 90 ~~~~~~w~~l~~~~e~~~~V~-~~v~~~vKG-G~~Vdi~g----vr~FlP~S~v~~r~v~d~~--~~~Gk~~~~kiie~d 161 (541)
T COG0539 90 AERERAWEKLEEAFENGEIVE-GKITGKVKG-GLTVDIEG----VRAFLPGSLVDVRPVRDLD--PLIGKELEFKILELD 161 (541)
T ss_pred HHHHHhHHHHHHHHhcCCeEE-EEEEEEecC-cEEEEECC----EEEeccHHHhccccccccc--ccCCceEEEEEEEEc
Confidence 6544222 346789999997 677777788 99999962 6999999999988777754 579999999999999
Q ss_pred eCCCeEEEEecccc----ccccccccccCCCCcEEEEEEEEEecCcEEEEeCCCeEEeecCCCcccccccCCCCCcCCCC
Q 000227 472 HLEGLATGILKASA----FEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGA 547 (1826)
Q Consensus 472 ~~d~~~~ls~k~~~----~~~~~~~~~~l~~G~iv~g~V~~v~~~G~~V~i~~~v~G~Vp~~hlsd~~l~~p~~~fkvG~ 547 (1826)
..++.+++|.+... .+++...++.|++|++|+|+|+++++||+||+|+ |++||||.+||||.++.||++.|++||
T Consensus 162 ~~~n~vv~SrR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdig-GvdGLlHiseiS~~rv~~P~~vvkvGd 240 (541)
T COG0539 162 KKRNNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIG-GVDGLLHISEISWKRVDHPSEVVKVGD 240 (541)
T ss_pred cccCcEEEEhHHHhhHHHHHHHHHHHhcCCCCceEEEEEEEeecCcEEEEec-CeeeEEehhhccccccCCHHHhcccCC
Confidence 99999999976543 3566788999999999999999999999999998 699999999999999999999999999
Q ss_pred EEEEEEEEE--eCCeEEEEecchhhccchhhccc-cccccCCcEEEEEEEEEecceEEEEEcCCeEEEEeCcccCCCCCC
Q 000227 548 ELVFRVLGV--KSKRITVTHKKTLVKSKLAILSS-YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGC 624 (1826)
Q Consensus 548 ~Vk~rVL~v--~~~~i~LSlK~~Lv~~~~~~~~s-~~~~~~G~~~~G~V~~i~~~G~~V~~~~gv~G~vp~sel~~~~~~ 624 (1826)
+|+|+||++ +++|+.||+|+++.+ +|.. ...+++|+.+.|+|+++.+|||||++++|+.||+|.|||+|....
T Consensus 241 ~VkvkVi~~D~e~~RVsLSlK~l~~d----Pw~~i~~~~~~g~~v~G~Vt~i~~~GafVei~~GvEGlvhvSEisw~~~~ 316 (541)
T COG0539 241 EVKVKVISLDEERGRVSLSLKQLEED----PWEGIEKKYPVGDKVEGKVTNLTDYGAFVEIEEGVEGLVHVSEISWTKKN 316 (541)
T ss_pred EEEEEEEEEccCCCeEEEEehhcccC----cHHHHhhhcCCCCEEEEEEEEeecCcEEEEecCCccceeechhhcccccC
Confidence 999999999 689999999998875 4444 334689999999999999999999999999999999999999887
Q ss_pred CCCCCccCCCEEEEEEEEEccCCCEEEEEEeeCCC-CCc-ccccccCCCEEEEEEEEEecCeEEEEEEecCceEEEeeCc
Q 000227 625 EPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPT-RVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTE 702 (1826)
Q Consensus 625 ~~~~~~~vGq~V~vrVl~vd~~~~ri~lS~k~~~~-~~~-~~~~~~vG~iv~g~V~~v~~~g~~V~l~~~~~v~G~i~~~ 702 (1826)
.|++++++||+|.|+|++||++++||+||||+... ||. ..+.+++|+.++|.|+++|++|+||.+ +++++|++|.+
T Consensus 317 ~P~evv~~Gq~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~~~~~~g~~v~g~v~~~t~~g~fv~l--e~gidG~vh~~ 394 (541)
T COG0539 317 VPSEVVKVGQEVEVKVLDIDPERRRISLGLKQLKENPWEEFADKHPVGDVVEGKVKSITDFGAFVEL--EGGIDGLVHLS 394 (541)
T ss_pred CHHHhcccCCEEEEEEEeeCchhceEEeeehhhhcChhhhhhhhcCCCCeEEEEEeeecccceEEcc--CCCccceEEHH
Confidence 79999999999999999999999999999998754 544 345699999999999999999999999 78899999999
Q ss_pred ccccccccccccccccCCCCEEE-EEEEeecCCCeEEEecccccccccccCCCccccCCCCCEEEEEEEEEeeceEEEEE
Q 000227 703 HLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRF 781 (1826)
Q Consensus 703 hLsd~~~~~~~l~~~lk~G~~i~-~vl~id~~~~~v~ls~K~sl~~~~~~i~~~~~~~~~G~~~~G~V~~i~~~GvfV~f 781 (1826)
+|||.....+.. .|+.|++++ .+|.+|++++++.|+.|+...+||.... ..++.|+.++|+|+++.++|+||+|
T Consensus 395 d~sw~~~~~~~~--~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~~p~~~~~---~~~~~~~~v~~~v~~i~~~G~~v~l 469 (541)
T COG0539 395 DLSWDRPGEEAE--KYKKGDEVEAKVLAVDKEKERISLGIKQLEESPWEEFS---EKYKKGSVVKGKVKSVKDKGAFVEL 469 (541)
T ss_pred hcCccccCcHHH--hhccCcEEEEEEEEEecccceeeeehhhhccCchhhhH---hhccCCCeEEEEEEEEccCceEEEe
Confidence 999965444433 899999999 8999999999999999999999887643 4488999999999999999999999
Q ss_pred CCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEeccccc
Q 000227 782 LGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1826)
Q Consensus 782 ~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~~~ 835 (1826)
.+++.||++.++++.+ .|++||+|+|+|+++|+.++++.||+|....
T Consensus 470 ~~~v~G~i~~~~~~~~-------~~~~gd~v~a~v~~id~k~~ki~lSik~~~~ 516 (541)
T COG0539 470 GGGVEGLIRLSELSRD-------VLKVGDEVEAVVVSIDKKNRKILLSIKALER 516 (541)
T ss_pred cCceeeeeecchhhhh-------hccCCCEEEEEEEEEcCCCCEEEEEechhhh
Confidence 9999999999999875 7999999999999999999999999997653
No 4
>COG0539 RpsA Ribosomal protein S1 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.8e-60 Score=573.42 Aligned_cols=496 Identities=23% Similarity=0.321 Sum_probs=440.5
Q ss_pred CCCCCCCCEEEeEEEEEEeCCceEEEEcCCCCCccceeeeccchhhHHHHhhhhhccCCCEEEEEEEEEEeCCCeEEEEe
Q 000227 402 PSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGIL 481 (1826)
Q Consensus 402 ~~~~~~G~iv~~~~V~~v~~~~Gl~v~i~~~~~~v~gfv~~s~~~~~~v~~~~~~~~vG~~~~~rVi~~~~~d~~~~ls~ 481 (1826)
...+.+|+++. ++|+.++.+ +++|+++.+. .|++|+++++..+... .|++|+.+.+.|+.....++.+++|.
T Consensus 16 ~~~~~~G~vV~-G~Vv~i~~~-~v~Vdig~Ks---eg~ip~~E~~~~~~~~---~~~~gd~v~v~v~~~e~~~g~~~lS~ 87 (541)
T COG0539 16 DEEFEPGDVVK-GTVVSIEKD-GVLVDIGGKS---EGVIPISEFSNEPVED---VVQVGDEVEVLVLRVEDGEGELVLSR 87 (541)
T ss_pred hhccCCCCEEE-EEEEEEeCC-eEEEEecCcc---ccEeEHHHhccccccc---eecCCCEEEEEEEEEecCCceEEeeH
Confidence 35789999997 689999998 8999999753 8999999998765444 49999999999999998889999998
Q ss_pred ccccccc-cccccccCCCCcEEEEEEEEEecCcEEEEeCCCeEEeecCCCcccccccCCCCCcCCCCEEEEEEEEE--eC
Q 000227 482 KASAFEG-LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KS 558 (1826)
Q Consensus 482 k~~~~~~-~~~~~~~l~~G~iv~g~V~~v~~~G~~V~i~~~v~G~Vp~~hlsd~~l~~p~~~fkvG~~Vk~rVL~v--~~ 558 (1826)
++....+ +......+..|.+|+|+|+...+.|++|++. |+.||+|.+|++..+..++ .-.+|.+++++|+.+ .+
T Consensus 88 ~k~~~~~~w~~l~~~~e~~~~V~~~v~~~vKGG~~Vdi~-gvr~FlP~S~v~~r~v~d~--~~~~Gk~~~~kiie~d~~~ 164 (541)
T COG0539 88 RKAERERAWEKLEEAFENGEIVEGKITGKVKGGLTVDIE-GVRAFLPGSLVDVRPVRDL--DPLIGKELEFKILELDKKR 164 (541)
T ss_pred HHHHHHHhHHHHHHHHhcCCeEEEEEEEEecCcEEEEEC-CEEEeccHHHhcccccccc--cccCCceEEEEEEEEcccc
Confidence 7665444 4455667889999999999999999999997 6999999999987444332 245999999999999 57
Q ss_pred CeEEEEecchhhccchhhc-cccccccCCcEEEEEEEEEecceEEEEEcCCeEEEEeCcccCCCCCCCCCCCccCCCEEE
Q 000227 559 KRITVTHKKTLVKSKLAIL-SSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVK 637 (1826)
Q Consensus 559 ~~i~LSlK~~Lv~~~~~~~-~s~~~~~~G~~~~G~V~~i~~~G~~V~~~~gv~G~vp~sel~~~~~~~~~~~~~vGq~V~ 637 (1826)
+++.+|+|..+..+..... .-++++++|+++.|+|+++++|||||+++ |++||+|+++|+|.++.+|++.|++||+|+
T Consensus 165 n~vv~SrR~~~e~~~~~~r~e~~~~l~~G~vV~G~V~~It~~GafVdig-GvdGLlHiseiS~~rv~~P~~vvkvGd~Vk 243 (541)
T COG0539 165 NNVVLSRRAVLEEERSEQREELLNKLEVGEVVEGVVKNITDYGAFVDIG-GVDGLLHISEISWKRVDHPSEVVKVGDEVK 243 (541)
T ss_pred CcEEEEhHHHhhHHHHHHHHHHHhcCCCCceEEEEEEEeecCcEEEEec-CeeeEEehhhccccccCCHHHhcccCCEEE
Confidence 8999999988875544322 22667899999999999999999999995 599999999999999999999999999999
Q ss_pred EEEEEEccCCCEEEEEEeeCC-CCCc-ccccccCCCEEEEEEEEEecCeEEEEEEecCceEEEeeCcccccccccccccc
Q 000227 638 CRIMSSIPASRRINLSFMMKP-TRVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMK 715 (1826)
Q Consensus 638 vrVl~vd~~~~ri~lS~k~~~-~~~~-~~~~~~vG~iv~g~V~~v~~~g~~V~l~~~~~v~G~i~~~hLsd~~~~~~~l~ 715 (1826)
|+|+++|++++|+.||+|+.. +||. ....+++|+.+.|+|++++++|+||++ .++++|++|.++|||..... ..
T Consensus 244 vkVi~~D~e~~RVsLSlK~l~~dPw~~i~~~~~~g~~v~G~Vt~i~~~GafVei--~~GvEGlvhvSEisw~~~~~--P~ 319 (541)
T COG0539 244 VKVISLDEERGRVSLSLKQLEEDPWEGIEKKYPVGDKVEGKVTNLTDYGAFVEI--EEGVEGLVHVSEISWTKKNV--PS 319 (541)
T ss_pred EEEEEEccCCCeEEEEehhcccCcHHHHhhhcCCCCEEEEEEEEeecCcEEEEe--cCCccceeechhhcccccCC--HH
Confidence 999999999999999999864 4665 457899999999999999999999999 89999999999999944332 46
Q ss_pred cccCCCCEEE-EEEEeecCCCeEEEecccccccccccCCCccccCCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCc
Q 000227 716 SVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKA 794 (1826)
Q Consensus 716 ~~lk~G~~i~-~vl~id~~~~~v~ls~K~sl~~~~~~i~~~~~~~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l 794 (1826)
+.+++||+++ ++|.+|++++||+||+|+...+||+.... .+++|+++.|.|+++|++|+||.+.+|++||+|.+++
T Consensus 320 evv~~Gq~V~V~Vl~id~e~rRIsL~iKq~~~~pw~~~~~---~~~~g~~v~g~v~~~t~~g~fv~le~gidG~vh~~d~ 396 (541)
T COG0539 320 EVVKVGQEVEVKVLDIDPERRRISLGLKQLKENPWEEFAD---KHPVGDVVEGKVKSITDFGAFVELEGGIDGLVHLSDL 396 (541)
T ss_pred HhcccCCEEEEEEEeeCchhceEEeeehhhhcChhhhhhh---hcCCCCeEEEEEeeecccceEEccCCCccceEEHHhc
Confidence 7899999999 99999999999999999999999987543 3889999999999999999999999999999999999
Q ss_pred CcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEecccccCCCcchhhHHHHHHHHHHHHhhcccCCCcccccccccCC
Q 000227 795 VDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFII 874 (1826)
Q Consensus 795 ~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v 874 (1826)
+|.....+...|+.|+.|+|.|+.+|++++|++|++|+... +||..+...++.
T Consensus 397 sw~~~~~~~~~~k~Gd~v~~~vl~vd~~~~~isLgiKql~~---------------------------~p~~~~~~~~~~ 449 (541)
T COG0539 397 SWDRPGEEAEKYKKGDEVEAKVLAVDKEKERISLGIKQLEE---------------------------SPWEEFSEKYKK 449 (541)
T ss_pred CccccCcHHHhhccCcEEEEEEEEEecccceeeeehhhhcc---------------------------CchhhhHhhccC
Confidence 99887777779999999999999999999999999998754 357777888999
Q ss_pred CcEEEEEEEEEecCceEEEecccCceEEEEeeeccCCccccCCCeEEEEEEEeecccCEEEEeehHhhhhh
Q 000227 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSLKTVFIDR 945 (1826)
Q Consensus 875 G~~V~g~V~~i~~~Gv~v~l~~~~~v~g~i~~~~ls~~~~~~G~~v~~~Vl~vd~~~~~v~lS~k~~lv~~ 945 (1826)
|+.|+|+|+++.++|+++.+.. ++.||++.++++...+++||+++|+|+.+|+.++.+.||+|+...+.
T Consensus 450 ~~~v~~~v~~i~~~G~~v~l~~--~v~G~i~~~~~~~~~~~~gd~v~a~v~~id~k~~ki~lSik~~~~~e 518 (541)
T COG0539 450 GSVVKGKVKSVKDKGAFVELGG--GVEGLIRLSELSRDVLKVGDEVEAVVVSIDKKNRKILLSIKALERKE 518 (541)
T ss_pred CCeEEEEEEEEccCceEEEecC--ceeeeeecchhhhhhccCCCEEEEEEEEEcCCCCEEEEEechhhhhh
Confidence 9999999999999999999986 58999999999999999999999999999999999999999876654
No 5
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=100.00 E-value=1.1e-55 Score=575.44 Aligned_cols=494 Identities=20% Similarity=0.246 Sum_probs=419.6
Q ss_pred cccccccCCCceEEEEEEEEecCeEEEEeCCCeEEEEecccccCCCCCCCccccCCCCCEEEEEEEEEeCCccEEEEeeC
Q 000227 313 GISIDLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLN 392 (1826)
Q Consensus 313 ~~s~~~l~pG~~V~~~V~~V~~~Gl~v~~~~~~~G~v~~~hl~~~~~~~~~~~~y~~G~~v~arVl~v~~~~k~v~LSl~ 392 (1826)
..++..+.+|.+|.|+|.+|+++++.|++++..+|+|+..++.. .+++|++|.|+|+.+++. + +.||..
T Consensus 313 ~~~~~~~~~G~iV~G~Vv~i~~~~v~VdiG~K~eGiI~~~E~~~---------~~kvGd~i~~~V~~~~~~-~-~~LS~~ 381 (863)
T PRK12269 313 RYSFEAPEPGSVRMGTVVQVNAGTVFVDIGGKSEGRVPVEEFEA---------PPKAGDGVRVYVERVTPY-G-PELSKT 381 (863)
T ss_pred hhccccCCCCCEEEEEEEEEECCEEEEEeCCCceEEeEHHHhcc---------CCCCCCEEEEEEEEEcCC-c-eEEEeh
Confidence 45578899999999999999999999999999999999888732 479999999999999875 3 778887
Q ss_pred hhhcc--CCCCCCCCCCCCEEEeEEEEEEe--CCceEEEEcCCCCCccceeeeccchhhHHHHhhhhhccCCCEEEEEEE
Q 000227 393 PYLLH--NRAPPSHVKVGDIYDQSKVVRVD--RGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRIL 468 (1826)
Q Consensus 393 p~~~~--~~~~~~~~~~G~iv~~~~V~~v~--~~~Gl~v~i~~~~~~v~gfv~~s~~~~~~v~~~~~~~~vG~~~~~rVi 468 (1826)
..... |....+++..|++++ ++|.+++ .+ |++|+++.+ ++||+|.|++.....+++. ..+|.++.+.|+
T Consensus 382 ~~~~~~~~~~l~~a~~~g~~V~-G~Vv~v~~~kg-G~~Vdig~~---~~gfiP~se~~~~~~~~~~--~~vG~~ie~~V~ 454 (863)
T PRK12269 382 KADRLGLKVKLRDAERDGTPVE-GRIVRLTEKKS-GFEVDLGAG---MMAFLPISQSDCQKVDAPE--SLIGLTSKFYIE 454 (863)
T ss_pred HhhhhHHHHHHHHHHhCCCeEE-EEEEEEEeecC-EEEEEECCC---cEEEEEHHHhccccccchH--HhCCCeEEEEEE
Confidence 55321 222346889999998 6888864 45 899999643 4899999998755444443 468999999999
Q ss_pred EEEe-----CCCeEEEEecccccc----ccccccccCCCCcEEEEEEEEEecCcEEEEeCCCeEEeecCCCcccccccCC
Q 000227 469 GFRH-----LEGLATGILKASAFE----GLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKP 539 (1826)
Q Consensus 469 ~~~~-----~d~~~~ls~k~~~~~----~~~~~~~~l~~G~iv~g~V~~v~~~G~~V~i~~~v~G~Vp~~hlsd~~l~~p 539 (1826)
.++. .++.+++|.+...-+ .....++++++|++|+|+|.++.++|+||+++ |++||||.+|++|.+..+|
T Consensus 455 ~~~~~~~~~~~~~iVlSrr~~l~e~~~~~~ee~~~~l~~G~~V~G~Vk~i~~~G~fVdl~-Gv~Gfvp~SeiS~~~v~~~ 533 (863)
T PRK12269 455 RISQSKQHRGNDNIVINRRRYLEERARQAREEFFNSVHIEDSVSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGHVARP 533 (863)
T ss_pred EEecccccCCCCeEEEEHHHHHHHHHHHHHHHHHhcCCCCCEEEEEEEEEeCCcEEEEEC-CEEEEEEchhccccccCCH
Confidence 9875 336788997653222 12233578999999999999999999999995 8999999999999888899
Q ss_pred CCCcCCCCEEEEEEEEE--eCCeEEEEecchhhccchhhcccc-ccccCCcEEEEEEEEEecceEEEEEcCCeEEEEeCc
Q 000227 540 GKKFKVGAELVFRVLGV--KSKRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616 (1826)
Q Consensus 540 ~~~fkvG~~Vk~rVL~v--~~~~i~LSlK~~Lv~~~~~~~~s~-~~~~~G~~~~G~V~~i~~~G~~V~~~~gv~G~vp~s 616 (1826)
.+.|++|++|+|+||.+ .++++.||+|..+.+ +|..+ +.+++|+++.|+|+++.++|+||++.+|+.||+|.|
T Consensus 534 ~~~~kvGq~v~vkVi~iD~e~~rI~LSlK~l~~~----p~~~~~~~~~vG~iV~G~V~~I~~fG~fVeL~~gveGLvhiS 609 (863)
T PRK12269 534 REFVKKGQTIELKVIRLDQAEKRINLSLKHFQPD----PWLEFENKFGVNDVVKGRVTKIADFGAFIELAEGIEGLAHIS 609 (863)
T ss_pred HHhccCCCEEEEEEEEEecCCCeEEEEEeccccc----hhhhhhccCCCCCEEEEEEEEEeCCeEEEEecCCceeeeEHH
Confidence 99999999999999999 478999999987543 34443 347899999999999999999999999999999999
Q ss_pred ccCC-CCCCCCCCCccCCCEEEEEEEEEccCCCEEEEEEeeCC-CCCcc-cccccCCCEEEEEEEEEecCeEEEEEEecC
Q 000227 617 ELGL-DPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKG 693 (1826)
Q Consensus 617 el~~-~~~~~~~~~~~vGq~V~vrVl~vd~~~~ri~lS~k~~~-~~~~~-~~~~~vG~iv~g~V~~v~~~g~~V~l~~~~ 693 (1826)
+++| ....+|.+.|++||+|+|+|+++|++++|+.||+++.. ++|.. .+.+++|++++|+|++++++|++|++ .+
T Consensus 610 Els~~~~~~~p~~~~kvGd~V~vkVl~iD~e~~rIsLS~K~l~~~Pw~~~~~~~~vG~~v~G~V~~i~~~G~fV~l--~~ 687 (863)
T PRK12269 610 EFSWVKKTSKPSDMVKIGDEVECMILGYDIQAGRVSLGLKQVTANPWEEIEARYPVGARFTRRIVKVTNAGAFIEM--EE 687 (863)
T ss_pred HhcCccccCCHHHcCCCCCEEEEEEEEEecccCceEEEehhcccCchHHHHHhCCCCCEEEEEEEEEecceEEEEe--CC
Confidence 9998 56778999999999999999999999999999999754 45644 46789999999999999999999999 78
Q ss_pred ceEEEeeCcccccccccccccccccCCCCEEE-EEEEeecCCCeEEEecccccccccccCCCccccCCCCCEEEEEEEEE
Q 000227 694 YSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNI 772 (1826)
Q Consensus 694 ~v~G~i~~~hLsd~~~~~~~l~~~lk~G~~i~-~vl~id~~~~~v~ls~K~sl~~~~~~i~~~~~~~~~G~~~~G~V~~i 772 (1826)
+++|+||.++|||.... ....+.|++||.|+ +++.+|++++++.||+|+.+.++|..+ ..++++|+.+.|+|+++
T Consensus 688 gV~GlIh~sels~~~~~-~~~~~~~kvGq~VkvkVl~ID~e~rrI~LS~K~l~~dpw~~~---~~~~~vG~iV~GkV~~v 763 (863)
T PRK12269 688 GIDGFLHVDDLSWVKRT-RPADHELEVGKEIECMVIECDPQARRIRLGVKQLSDNPWQVF---ANAYGVGSTVEGEVSSV 763 (863)
T ss_pred CcEEEEEhHHhhccccc-cchhhccCCCCEEEEEEEEEeccCCEEEEEecccccChHHHH---HhhCCCCCEEEEEEEEE
Confidence 99999999999984321 12345799999999 899999999999999999998888753 24478999999999999
Q ss_pred eeceEEEEECCCeEEEEeCCCcCcccccCcc---cCCCCCCEEEEEEEEeeCCCCeEEEEeccccc
Q 000227 773 IETGCFVRFLGRLTGFAPRSKAVDGQRADLS---KTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1826)
Q Consensus 773 ~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~---~~f~vGq~V~~~V~~id~e~~rl~LSlk~~~~ 835 (1826)
+++|+||++.+|+.||+|.++++|++..++. ..|++||.|+|+|+++|+++++|.||+|+...
T Consensus 764 ~~~GvFVeL~~gVeGlI~~s~lsdd~~~~~~~~~~~f~vGD~V~v~Vl~iD~~~rkI~LSlk~~~~ 829 (863)
T PRK12269 764 TDFGIFVRVPGGVEGLVRKQHLVENRDGDPGEALRKYAVGDRVKAVIVDMNVKDRKVAFSVRDYQR 829 (863)
T ss_pred ecCeEEEEcCCCeEEEEEHHHcCCcccccchhhccccCCCCEEEEEEEEEEcCCCEEEEEEechhh
Confidence 9999999999999999999999998765543 45999999999999999999999999997653
No 6
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=9.2e-55 Score=564.14 Aligned_cols=508 Identities=22% Similarity=0.305 Sum_probs=427.3
Q ss_pred cccCCCCEEEEEEEEEEccEEEEEecCCCceEEEEecccccccCCCcccccCCCEEEEEEEeecCCCcccceeeeecccc
Q 000227 966 KDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAIS 1045 (1826)
Q Consensus 966 ~~L~~G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~n~~~~~~~~f~vGq~v~a~V~~~~~~~~~~~l~Ll~~~~~ 1045 (1826)
.+++.|+.|+|+|..+++++++|++ +++..|++|.+++. ...+...|.+|+++.+.|..++ +..++++|+.....
T Consensus 26 ~~~~~G~~v~G~V~~v~~~~~~Vdi--g~k~~g~lp~~e~~-~~~~~~~~~vG~~i~~~V~~~~--~~~~~i~lS~k~~~ 100 (565)
T PRK06299 26 SETREGSIVKGTVVAIDKDYVLVDV--GLKSEGRIPLEEFK-NEQGELEVKVGDEVEVYVERIE--DGFGETVLSREKAK 100 (565)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEe--CCCeEEEEEHHHhc-CccccccCCCCCEEEEEEEEEE--CCCCcEEEechHHH
Confidence 4578999999999999999999999 78899999999995 2223346999999999999986 44566666543221
Q ss_pred ccccchhHHhhcccCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEEceeccCCcccccccccccccCCCEEEEEEEeee
Q 000227 1046 ETETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKS 1125 (1826)
Q Consensus 1046 ~~~~~~~~~~~~~~~~~~G~~v~~~V~~ik~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~P~~~~~~G~~v~~~Vl~~~ 1125 (1826)
....+..-...++.|++|+|+|.++.+.|+.|+++ ++.|++|.+++.+... .++ .+.+|++++|+|+.++
T Consensus 101 ----~~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~~~-g~~gfip~s~~~~~~~---~~~--~~~vG~~i~~~V~~~d 170 (565)
T PRK06299 101 ----RLEAWDKLEKAFENGEIVEGVINGKVKGGFTVDLN-GVEAFLPGSQVDVRPV---RDT--DPLEGKELEFKVIKLD 170 (565)
T ss_pred ----HHHHHHHHHHHhhCCCEEEEEEEEEECCEEEEEEC-CEEEEEEHHHccCcCC---CCh--HHhCCCEEEEEEEEEE
Confidence 11122333456789999999999999999999998 8999999999965431 222 3569999999999998
Q ss_pred cCCCCccceeEEEeeccccccccccccccccccccCCCCCEEEEEEEEEeCCEEEEEECCCceEEEEccccCCCCchhhh
Q 000227 1126 NKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQE 1205 (1826)
Q Consensus 1126 ~~~~~~k~~~veLS~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~V~i~~~~~g~l~~~~~s~~~~~l~~ 1205 (1826)
.. +..+.||+|+.+-..........+++ +++|+.+.|+|.++.+++++|+++ ++.|++|..+++|.. +.+
T Consensus 171 ~~-----~~~i~lS~k~~~~~~~~~~~~~~~~~--l~~G~iv~g~V~~v~~~G~~V~i~-g~~glv~~se~s~~~--~~~ 240 (565)
T PRK06299 171 KK-----RNNIVVSRRAVLEEERAEEREELLEN--LEEGQVVEGVVKNITDYGAFVDLG-GVDGLLHITDISWKR--VNH 240 (565)
T ss_pred CC-----CCEEEEEhHHhhhhhhhhHHHHHHhc--CCCCCEEEEEEEEEeCCeEEEEEC-CEEEEEEHHHhcccc--cCC
Confidence 32 23588999986532111000112333 699999999999999999999998 899999999999874 456
Q ss_pred hccccCCCCEEEEEEEEEeCCCcEEEEEecccccCCCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEECCce
Q 000227 1206 FQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHL 1285 (1826)
Q Consensus 1206 ~~~~f~vG~~v~v~V~~vd~~~~~l~LS~~~~~~~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~ 1285 (1826)
+.+.|++||.|.|+|+.+|.+++++.||++... .++|......++ +|+++.|+|+++.++ |+||+|++++
T Consensus 241 ~~~~~kvG~~v~v~V~~~d~~~~~i~lS~k~~~---~~p~~~~~~~~~-----~G~~v~g~V~~i~~~--G~fV~l~~~v 310 (565)
T PRK06299 241 PSEVVNVGDEVKVKVLKFDKEKKRVSLGLKQLG---EDPWEAIEKKYP-----VGSKVKGKVTNITDY--GAFVELEEGI 310 (565)
T ss_pred HhhcCCCCCEEEEEEEEEeCCCCeEEEEEEecc---cChhHHHHhhCC-----CCCEEEEEEEEEeCC--eEEEEeCCCC
Confidence 778899999999999999999999999999764 467876555555 999999999999999 9999999999
Q ss_pred EEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecccCCceEEEEEeeeccCCCCCCCCCCCCCCCCC
Q 000227 1286 YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDT 1365 (1826)
Q Consensus 1286 ~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~f~~G~~V~~~Vl~id~~~~g~~~i~LS~r~s~~~~~~~~~~~~~~~~~~ 1365 (1826)
.|++|++|++++... .+|...|++|+.|+|+|+++|++ ++++.||+|.+. .+
T Consensus 311 ~Glv~~sel~~~~~~----------~~~~~~~~~G~~v~v~V~~id~~---~~~i~ls~k~~~-----~~---------- 362 (565)
T PRK06299 311 EGLVHVSEMSWTKKN----------KHPSKVVSVGQEVEVMVLEIDEE---KRRISLGLKQCK-----EN---------- 362 (565)
T ss_pred EEEEEHHHcCccccc----------cCHHHhcCCCCEEEEEEEEEcCC---CCEEEEehHHhc-----cc----------
Confidence 999999999764321 12667789999999999999986 679999999875 22
Q ss_pred CcccccccccCCCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCcc-CCCCccCCCCcEEEEEEEEEeCCCCeEE
Q 000227 1366 PGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVE 1444 (1826)
Q Consensus 1366 ~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v-~~~~~~f~vGq~V~~kVl~vd~e~~rI~ 1444 (1826)
++.....++++|++|.|+|++++++|+||+|+++++|++|+++++|.+. .+|.+.|++||.|+|+|+++|+++++|.
T Consensus 363 --p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~~~v~g~i~~s~l~~~~~~~~~~~~~~~Gd~v~v~Il~vd~~~~~i~ 440 (565)
T PRK06299 363 --PWEEFAEKYPVGDVVEGKVKNITDFGAFVGLEGGIDGLVHLSDISWDKKGEEAVELYKKGDEVEAVVLKVDVEKERIS 440 (565)
T ss_pred --hhhhHHHhCCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHcCccccccChHhhCCCCCEEEEEEEEEeCCCCEEE
Confidence 3344556789999999999999999999999999999999999999887 8899999999999999999999999999
Q ss_pred EEEeccccccccccccccccccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEE
Q 000227 1445 VTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKI 1524 (1826)
Q Consensus 1445 lSlk~s~~~~~~~~~~~~~~~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kV 1524 (1826)
||+|++..+||... ..++++|++|.|+|+++.++|+||.+.+ ++.||||+|++++.++.++.+.|++||.|+|+|
T Consensus 441 ls~k~~~~~p~~~~----~~~~~~G~vV~G~V~~v~~~G~fV~l~~-gi~g~i~~se~s~~~~~~~~~~~~~Gd~v~~~V 515 (565)
T PRK06299 441 LGIKQLEEDPFEEF----AKKHKKGSIVTGTVTEVKDKGAFVELED-GVEGLIRASELSRDRVEDATEVLKVGDEVEAKV 515 (565)
T ss_pred EEEehhhcCchhHH----HhhcCCCCEEEEEEEEEecCceEEecCC-CcEEEEEHHHhcchhccCccccCCCCCEEEEEE
Confidence 99999988876542 5678999999999999999999999986 899999999999999999999999999999999
Q ss_pred EEEeCCCCeEEEeeecccc
Q 000227 1525 LKVDKEKRRISLGMKSSYF 1543 (1826)
Q Consensus 1525 l~id~e~~rI~LslK~s~~ 1543 (1826)
+++|++++||+||+|++..
T Consensus 516 ~~vd~~~~~i~LS~k~~~~ 534 (565)
T PRK06299 516 INIDRKNRRISLSIKALDE 534 (565)
T ss_pred EEEccccCEEEEEeeehhh
Confidence 9999999999999999754
No 7
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=100.00 E-value=1.1e-54 Score=566.01 Aligned_cols=506 Identities=19% Similarity=0.262 Sum_probs=415.6
Q ss_pred cccccCCCCEEEEEEEEEEccEEEEEecCCCceEEEEecccccccCCCcccccCCCEEEEEEEeecCCCcccceeeeecc
Q 000227 964 ASKDLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKA 1043 (1826)
Q Consensus 964 ~~~~L~~G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~n~~~~~~~~f~vGq~v~a~V~~~~~~~~~~~l~Ll~~~ 1043 (1826)
.+..++.|++|+|+|..++++++||++ +++..|++|..+|. ..+++|++|.|.|..++ + .+ ..|....
T Consensus 315 ~~~~~~~G~iV~G~Vv~i~~~~v~Vdi--G~K~eGiI~~~E~~------~~~kvGd~i~~~V~~~~--~-~~-~~LS~~~ 382 (863)
T PRK12269 315 SFEAPEPGSVRMGTVVQVNAGTVFVDI--GGKSEGRVPVEEFE------APPKAGDGVRVYVERVT--P-YG-PELSKTK 382 (863)
T ss_pred ccccCCCCCEEEEEEEEEECCEEEEEe--CCCceEEeEHHHhc------cCCCCCCEEEEEEEEEc--C-Cc-eEEEehH
Confidence 356789999999999999999999999 89999999999983 23689999999999986 2 23 3333221
Q ss_pred ccccccchhHHhhcccCCCCCCEEEEEEEEEe--CCeEEEEeCCCeeEEEEceeccCCcccccccccccccCCCEEEEEE
Q 000227 1044 ISETETSSSKRAKKKSSYDVGSLVQAEITEIK--PLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARI 1121 (1826)
Q Consensus 1044 ~~~~~~~~~~~~~~~~~~~~G~~v~~~V~~ik--~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~P~~~~~~G~~v~~~V 1121 (1826)
.. ....+.+-...++.|++|+|+|.++. +.|+.|+++.+..|+++.+|+..... ..+ ...+|+.++++|
T Consensus 383 ~~----~~~~~~~l~~a~~~g~~V~G~Vv~v~~~kgG~~Vdig~~~~gfiP~se~~~~~~----~~~-~~~vG~~ie~~V 453 (863)
T PRK12269 383 AD----RLGLKVKLRDAERDGTPVEGRIVRLTEKKSGFEVDLGAGMMAFLPISQSDCQKV----DAP-ESLIGLTSKFYI 453 (863)
T ss_pred hh----hhHHHHHHHHHHhCCCeEEEEEEEEEeecCEEEEEECCCcEEEEEHHHhccccc----cch-HHhCCCeEEEEE
Confidence 10 01113334467899999999999984 57999999888999999999954321 112 235899999999
Q ss_pred EeeecCCCCccceeEEEeeccccccccccccccccccccCCCCCEEEEEEEEEeCCEEEEEECCCceEEEEccccCCCCc
Q 000227 1122 IAKSNKPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPS 1201 (1826)
Q Consensus 1122 l~~~~~~~~~k~~~veLS~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~V~i~~~~~g~l~~~~~s~~~~ 1201 (1826)
+.++....+...+.+.||.|..+-+.........+++ +++|+.|.|+|.++.+++++|+++ +++|++|.++++|+.
T Consensus 454 ~~~~~~~~~~~~~~iVlSrr~~l~e~~~~~~ee~~~~--l~~G~~V~G~Vk~i~~~G~fVdl~-Gv~Gfvp~SeiS~~~- 529 (863)
T PRK12269 454 ERISQSKQHRGNDNIVINRRRYLEERARQAREEFFNS--VHIEDSVSGVVKSFTSFGAFIDLG-GFDGLLHVNDMSWGH- 529 (863)
T ss_pred EEEecccccCCCCeEEEEHHHHHHHHHHHHHHHHHhc--CCCCCEEEEEEEEEeCCcEEEEEC-CEEEEEEchhccccc-
Confidence 9987321111234699999875432221101113444 589999999999999999999995 899999999999874
Q ss_pred hhhhhccccCCCCEEEEEEEEEeCCCcEEEEEecccccCCCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEE
Q 000227 1202 ELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQI 1281 (1826)
Q Consensus 1202 ~l~~~~~~f~vG~~v~v~V~~vd~~~~~l~LS~~~~~~~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l 1281 (1826)
..++.+.|++||.++|+|+++|.+++++.||++... .++|....+.++ +|+++.|+|+++.++ |+||+|
T Consensus 530 -v~~~~~~~kvGq~v~vkVi~iD~e~~rI~LSlK~l~---~~p~~~~~~~~~-----vG~iV~G~V~~I~~f--G~fVeL 598 (863)
T PRK12269 530 -VARPREFVKKGQTIELKVIRLDQAEKRINLSLKHFQ---PDPWLEFENKFG-----VNDVVKGRVTKIADF--GAFIEL 598 (863)
T ss_pred -cCCHHHhccCCCEEEEEEEEEecCCCeEEEEEeccc---cchhhhhhccCC-----CCCEEEEEEEEEeCC--eEEEEe
Confidence 456777899999999999999999999999999863 577876556665 999999999999999 999999
Q ss_pred CCceEEEEeccccccc-ccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecccCCceEEEEEeeeccCCCCCCCCCCCC
Q 000227 1282 GPHLYGRVHFTELKNI-CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLS 1360 (1826)
Q Consensus 1282 ~~~~~G~v~~sel~d~-~~~~~~~~~~~~~~~p~~~f~~G~~V~~~Vl~id~~~~g~~~i~LS~r~s~~~~~~~~~~~~~ 1360 (1826)
++++.|++|++|+++. ...+ |.+.|++||.|+|+|+++|.+ ++++.||++... .+
T Consensus 599 ~~gveGLvhiSEls~~~~~~~-----------p~~~~kvGd~V~vkVl~iD~e---~~rIsLS~K~l~-----~~----- 654 (863)
T PRK12269 599 AEGIEGLAHISEFSWVKKTSK-----------PSDMVKIGDEVECMILGYDIQ---AGRVSLGLKQVT-----AN----- 654 (863)
T ss_pred cCCceeeeEHHHhcCccccCC-----------HHHcCCCCCEEEEEEEEEecc---cCceEEEehhcc-----cC-----
Confidence 9999999999999752 2333 888899999999999999986 679999999875 22
Q ss_pred CCCCCCcccccccccCCCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCcc-CCCCccCCCCcEEEEEEEEEeCC
Q 000227 1361 TDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPL 1439 (1826)
Q Consensus 1361 ~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v-~~~~~~f~vGq~V~~kVl~vd~e 1439 (1826)
|+....+++++|+++.|+|++++++|+||+|+++++|+||.+++||... ..+.+.|++||.|+|+|+++|++
T Consensus 655 -------Pw~~~~~~~~vG~~v~G~V~~i~~~G~fV~l~~gV~GlIh~sels~~~~~~~~~~~~kvGq~VkvkVl~ID~e 727 (863)
T PRK12269 655 -------PWEEIEARYPVGARFTRRIVKVTNAGAFIEMEEGIDGFLHVDDLSWVKRTRPADHELEVGKEIECMVIECDPQ 727 (863)
T ss_pred -------chHHHHHhCCCCCEEEEEEEEEecceEEEEeCCCcEEEEEhHHhhccccccchhhccCCCCEEEEEEEEEecc
Confidence 3444456799999999999999999999999999999999999999765 44556899999999999999999
Q ss_pred CCeEEEEEeccccccccccccccccccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCc---cccCCC
Q 000227 1440 SKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI---ETIYRA 1516 (1826)
Q Consensus 1440 ~~rI~lSlk~s~~~~~~~~~~~~~~~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~---~~~~~~ 1516 (1826)
++||.||+|+...+||... ..++++|++|.|+|+++.+||+||+|.+ +++||+|+++++|++..+. .+.|++
T Consensus 728 ~rrI~LS~K~l~~dpw~~~----~~~~~vG~iV~GkV~~v~~~GvFVeL~~-gVeGlI~~s~lsdd~~~~~~~~~~~f~v 802 (863)
T PRK12269 728 ARRIRLGVKQLSDNPWQVF----ANAYGVGSTVEGEVSSVTDFGIFVRVPG-GVEGLVRKQHLVENRDGDPGEALRKYAV 802 (863)
T ss_pred CCEEEEEecccccChHHHH----HhhCCCCCEEEEEEEEEecCeEEEEcCC-CeEEEEEHHHcCCcccccchhhccccCC
Confidence 9999999999988887542 4568999999999999999999999987 7999999999999876443 356999
Q ss_pred CCEEEEEEEEEeCCCCeEEEeeecc
Q 000227 1517 GEKVKVKILKVDKEKRRISLGMKSS 1541 (1826)
Q Consensus 1517 Gd~Vk~kVl~id~e~~rI~LslK~s 1541 (1826)
||.|+|+|+++|+++++|.||+|+.
T Consensus 803 GD~V~v~Vl~iD~~~rkI~LSlk~~ 827 (863)
T PRK12269 803 GDRVKAVIVDMNVKDRKVAFSVRDY 827 (863)
T ss_pred CCEEEEEEEEEEcCCCEEEEEEech
Confidence 9999999999999999999999985
No 8
>PRK06299 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=1.4e-54 Score=562.48 Aligned_cols=496 Identities=20% Similarity=0.251 Sum_probs=431.1
Q ss_pred cccCCCceEEEEEEEEecCeEEEEeCCCeEEEEecccccCCCCCCCccccCCCCCEEEEEEEEEeCCccEEEEeeChhhc
Q 000227 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396 (1826)
Q Consensus 317 ~~l~pG~~V~~~V~~V~~~Gl~v~~~~~~~G~v~~~hl~~~~~~~~~~~~y~~G~~v~arVl~v~~~~k~v~LSl~p~~~ 396 (1826)
..+.+|+.|.|+|.+++++|++|++++...|+++..|++.... ...|++|++++|+|+.+++..+.+.||+++...
T Consensus 26 ~~~~~G~~v~G~V~~v~~~~~~Vdig~k~~g~lp~~e~~~~~~----~~~~~vG~~i~~~V~~~~~~~~~i~lS~k~~~~ 101 (565)
T PRK06299 26 SETREGSIVKGTVVAIDKDYVLVDVGLKSEGRIPLEEFKNEQG----ELEVKVGDEVEVYVERIEDGFGETVLSREKAKR 101 (565)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEeCCCeEEEEEHHHhcCccc----cccCCCCCEEEEEEEEEECCCCcEEEechHHHH
Confidence 4478999999999999999999999888999999999985322 247999999999999999988899999987643
Q ss_pred c--CCCCCCCCCCCCEEEeEEEEEEeCCceEEEEcCCCCCccceeeeccchhhHHHHhhhhhccCCCEEEEEEEEEEeCC
Q 000227 397 H--NRAPPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474 (1826)
Q Consensus 397 ~--~~~~~~~~~~G~iv~~~~V~~v~~~~Gl~v~i~~~~~~v~gfv~~s~~~~~~v~~~~~~~~vG~~~~~rVi~~~~~d 474 (1826)
. +....+++..|++++ ++|..+..+ |++|++++ ++||+|.+++++....+++ +.+|+++.|+|+.++...
T Consensus 102 ~~~~~~l~~~~~~g~~v~-g~V~~~~~~-G~~V~~~g----~~gfip~s~~~~~~~~~~~--~~vG~~i~~~V~~~d~~~ 173 (565)
T PRK06299 102 LEAWDKLEKAFENGEIVE-GVINGKVKG-GFTVDLNG----VEAFLPGSQVDVRPVRDTD--PLEGKELEFKVIKLDKKR 173 (565)
T ss_pred HHHHHHHHHHhhCCCEEE-EEEEEEECC-EEEEEECC----EEEEEEHHHccCcCCCChH--HhCCCEEEEEEEEEECCC
Confidence 3 222335788999997 688888887 99999972 5999999999876555543 679999999999999999
Q ss_pred CeEEEEeccccccc----cccccccCCCCcEEEEEEEEEecCcEEEEeCCCeEEeecCCCcccccccCCCCCcCCCCEEE
Q 000227 475 GLATGILKASAFEG----LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550 (1826)
Q Consensus 475 ~~~~ls~k~~~~~~----~~~~~~~l~~G~iv~g~V~~v~~~G~~V~i~~~v~G~Vp~~hlsd~~l~~p~~~fkvG~~Vk 550 (1826)
+.+.+|+++...+. +...+.++++|++++|+|+++.++|++|+++ +++|+||.++++|.+..+|.+.|++|++|+
T Consensus 174 ~~i~lS~k~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~G~~V~i~-g~~glv~~se~s~~~~~~~~~~~kvG~~v~ 252 (565)
T PRK06299 174 NNIVVSRRAVLEEERAEEREELLENLEEGQVVEGVVKNITDYGAFVDLG-GVDGLLHITDISWKRVNHPSEVVNVGDEVK 252 (565)
T ss_pred CEEEEEhHHhhhhhhhhHHHHHHhcCCCCCEEEEEEEEEeCCeEEEEEC-CEEEEEEHHHhcccccCCHhhcCCCCCEEE
Confidence 99999988765322 2344678999999999999999999999998 899999999999988899999999999999
Q ss_pred EEEEEE--eCCeEEEEecchhhccchhhcccc-ccccCCcEEEEEEEEEecceEEEEEcCCeEEEEeCcccCCC-CCCCC
Q 000227 551 FRVLGV--KSKRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEP 626 (1826)
Q Consensus 551 ~rVL~v--~~~~i~LSlK~~Lv~~~~~~~~s~-~~~~~G~~~~G~V~~i~~~G~~V~~~~gv~G~vp~sel~~~-~~~~~ 626 (1826)
|+|+++ +++++.||+|....+ +|..+ +.+++|+++.|+|+++.++|+||++.+++.||+|.++++|. ...+|
T Consensus 253 v~V~~~d~~~~~i~lS~k~~~~~----p~~~~~~~~~~G~~v~g~V~~i~~~G~fV~l~~~v~Glv~~sel~~~~~~~~~ 328 (565)
T PRK06299 253 VKVLKFDKEKKRVSLGLKQLGED----PWEAIEKKYPVGSKVKGKVTNITDYGAFVELEEGIEGLVHVSEMSWTKKNKHP 328 (565)
T ss_pred EEEEEEeCCCCeEEEEEEecccC----hhHHHHhhCCCCCEEEEEEEEEeCCeEEEEeCCCCEEEEEHHHcCccccccCH
Confidence 999999 468999999987654 34333 34689999999999999999999999999999999999875 34567
Q ss_pred CCCccCCCEEEEEEEEEccCCCEEEEEEeeCC-CCCc-ccccccCCCEEEEEEEEEecCeEEEEEEecCceEEEeeCccc
Q 000227 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704 (1826)
Q Consensus 627 ~~~~~vGq~V~vrVl~vd~~~~ri~lS~k~~~-~~~~-~~~~~~vG~iv~g~V~~v~~~g~~V~l~~~~~v~G~i~~~hL 704 (1826)
...|++||.|+|+|+++|++++++.||+++.. .++. ....+++|++|.|+|+.++++|++|++ .+++.|+||..+|
T Consensus 329 ~~~~~~G~~v~v~V~~id~~~~~i~ls~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l--~~~v~g~i~~s~l 406 (565)
T PRK06299 329 SKVVSVGQEVEVMVLEIDEEKRRISLGLKQCKENPWEEFAEKYPVGDVVEGKVKNITDFGAFVGL--EGGIDGLVHLSDI 406 (565)
T ss_pred HHhcCCCCEEEEEEEEEcCCCCEEEEehHHhccchhhhHHHhCCCCCEEEEEEEEEecceEEEEC--CCCCEEEEEHHHc
Confidence 77899999999999999999999999998653 3333 234678999999999999999999999 7799999999999
Q ss_pred ccccccccccccccCCCCEEE-EEEEeecCCCeEEEecccccccccccCCCccccCCCCCEEEEEEEEEeeceEEEEECC
Q 000227 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783 (1826)
Q Consensus 705 sd~~~~~~~l~~~lk~G~~i~-~vl~id~~~~~v~ls~K~sl~~~~~~i~~~~~~~~~G~~~~G~V~~i~~~GvfV~f~~ 783 (1826)
++... .....+.|++|+.++ +++.+|.+++++.||+|++..++|... .+++++|+++.|+|+++.++|+||++.+
T Consensus 407 ~~~~~-~~~~~~~~~~Gd~v~v~Il~vd~~~~~i~ls~k~~~~~p~~~~---~~~~~~G~vV~G~V~~v~~~G~fV~l~~ 482 (565)
T PRK06299 407 SWDKK-GEEAVELYKKGDEVEAVVLKVDVEKERISLGIKQLEEDPFEEF---AKKHKKGSIVTGTVTEVKDKGAFVELED 482 (565)
T ss_pred Ccccc-ccChHhhCCCCCEEEEEEEEEeCCCCEEEEEEehhhcCchhHH---HhhcCCCCEEEEEEEEEecCceEEecCC
Confidence 97432 123457899999999 799999999999999999998888653 3568899999999999999999999999
Q ss_pred CeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEeccccc
Q 000227 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1826)
Q Consensus 784 gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~~~ 835 (1826)
|+.||+|.+++++.+..++.+.|++||.|+|+|+++|++++|+.||+|++..
T Consensus 483 gi~g~i~~se~s~~~~~~~~~~~~~Gd~v~~~V~~vd~~~~~i~LS~k~~~~ 534 (565)
T PRK06299 483 GVEGLIRASELSRDRVEDATEVLKVGDEVEAKVINIDRKNRRISLSIKALDE 534 (565)
T ss_pred CcEEEEEHHHhcchhccCccccCCCCCEEEEEEEEEccccCEEEEEeeehhh
Confidence 9999999999999999999999999999999999999999999999998753
No 9
>TIGR00717 rpsA ribosomal protein S1. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned.
Probab=100.00 E-value=1.3e-54 Score=558.44 Aligned_cols=490 Identities=22% Similarity=0.293 Sum_probs=423.5
Q ss_pred cccCCCceEEEEEEEEecCeEEEEeCCCeEEEEecccccCCCCCCCccccCCCCCEEEEEEEEEeCCccEEEEeeChhhc
Q 000227 317 DLLVPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTLNPYLL 396 (1826)
Q Consensus 317 ~~l~pG~~V~~~V~~V~~~Gl~v~~~~~~~G~v~~~hl~~~~~~~~~~~~y~~G~~v~arVl~v~~~~k~v~LSl~p~~~ 396 (1826)
..+.||++|.|+|.+|+++|++|+|++..+|+++..+++... +.|++|+++.++|+.+.+..+++.||+.+...
T Consensus 14 ~~~~~G~~v~g~V~~i~~~~~~v~~g~k~~g~i~~~E~~~~~------~~~~vGd~i~~~V~~~~~~~g~i~lS~~~~~~ 87 (516)
T TIGR00717 14 EETRPGSIVKGTVVAINKDTVFVDVGLKSEGRIPKEEFLDAP------LEIQVGDEVEVYLDRVEDRFGETVLSREKAQR 87 (516)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEcCCCcEEEEEHHHhcCCc------cCCCCCCEEEEEEEEEeCCCCcEEEEHHHhhh
Confidence 457999999999999999999999999999999999987532 47999999999999999888899999987643
Q ss_pred cCCC--CCCCCCCCCEEEeEEEEEEeCCceEEEEcCCCCCccceeeeccchhhHHHHhhhhhccCCCEEEEEEEEEEeCC
Q 000227 397 HNRA--PPSHVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLE 474 (1826)
Q Consensus 397 ~~~~--~~~~~~~G~iv~~~~V~~v~~~~Gl~v~i~~~~~~v~gfv~~s~~~~~~v~~~~~~~~vG~~~~~rVi~~~~~d 474 (1826)
...+ ...++..|++++ ++|.++..+ |++|+++. ++||+|.+++....+.+. .+.+|++++|+|+.++...
T Consensus 88 ~~~~~~l~~a~~~g~~v~-g~V~~~~~~-g~~V~i~g----~~~flP~s~~~~~~~~~~--~~~vG~~i~~~v~~~~~~~ 159 (516)
T TIGR00717 88 HELWIKLEKAYEEGSIVE-GKIVGKVKG-GFIVDLNG----VEAFLPGSQVDVKPIKDL--DSLIGKTLKFKIIKLDQKR 159 (516)
T ss_pred hHHHHHHHHHhhCCCeEE-EEEEEEECC-EEEEEECC----EEEEEeHHHhcCcccCch--hhhCCCEEEEEEEEEECCC
Confidence 2212 235678999997 789999988 99999972 599999999875432332 3689999999999999988
Q ss_pred CeEEEEeccccccc----cccccccCCCCcEEEEEEEEEecCcEEEEeCCCeEEeecCCCcccccccCCCCCcCCCCEEE
Q 000227 475 GLATGILKASAFEG----LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELV 550 (1826)
Q Consensus 475 ~~~~ls~k~~~~~~----~~~~~~~l~~G~iv~g~V~~v~~~G~~V~i~~~v~G~Vp~~hlsd~~l~~p~~~fkvG~~Vk 550 (1826)
+.+++|.++...+. +...+.++++|++++|+|+++.++|++|+++ +++||+|.++++|.+..+|...|++|++|+
T Consensus 160 ~~iv~Srk~~l~~~~~~~~~~~~~~l~~G~~v~g~V~~i~~~G~~V~l~-g~~g~lp~~e~s~~~~~~~~~~~~vG~~v~ 238 (516)
T TIGR00717 160 NNIVVSRRAYLEEERSQAREELLENLKEGDVVKGVVKNITDFGAFVDLG-GVDGLLHITDMSWKRVKHPSEYVKVGQEVK 238 (516)
T ss_pred CcEEEEHHHHHHHHHHHHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCCCCCCCHHHhccCCCEEE
Confidence 89999987653221 2344678999999999999999999999996 799999999999988888988999999999
Q ss_pred EEEEEE--eCCeEEEEecchhhccchhhcccc-ccccCCcEEEEEEEEEecceEEEEEcCCeEEEEeCcccCCC-CCCCC
Q 000227 551 FRVLGV--KSKRITVTHKKTLVKSKLAILSSY-AEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLD-PGCEP 626 (1826)
Q Consensus 551 ~rVL~v--~~~~i~LSlK~~Lv~~~~~~~~s~-~~~~~G~~~~G~V~~i~~~G~~V~~~~gv~G~vp~sel~~~-~~~~~ 626 (1826)
|+|+++ +++++.||+|....+ +|..+ +.+++|+++.|+|+++.++|+||++.+++.||+|.+++++. ...+|
T Consensus 239 v~Vl~~d~~~~~i~lS~k~~~~~----p~~~~~~~~~~G~i~~g~V~~v~~~G~fV~l~~~v~g~v~~sels~~~~~~~~ 314 (516)
T TIGR00717 239 VKVIKFDKEKGRISLSLKQLGED----PWEAIEKKFPVGDKITGRVTNLTDYGVFVEIEEGIEGLVHVSEMSWVKKNSHP 314 (516)
T ss_pred EEEEEEECCCCcEEEEEEecchh----HHHHHHhhccCCCEEEEEEEEeeCCcEEEEeCCCCEEEEEHHHcCCccccCCH
Confidence 999999 467899999987543 34443 34789999999999999999999999999999999999875 34566
Q ss_pred CCCccCCCEEEEEEEEEccCCCEEEEEEeeCC-CCCc-ccccccCCCEEEEEEEEEecCeEEEEEEecCceEEEeeCccc
Q 000227 627 SSMYHVGQVVKCRIMSSIPASRRINLSFMMKP-TRVS-EDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHL 704 (1826)
Q Consensus 627 ~~~~~vGq~V~vrVl~vd~~~~ri~lS~k~~~-~~~~-~~~~~~vG~iv~g~V~~v~~~g~~V~l~~~~~v~G~i~~~hL 704 (1826)
.+.|++||.|+|+|+++|++++++.||++... .++. ..+.+++|++++|+|++++++|++|++ ++++.|+||..+|
T Consensus 315 ~~~~~vG~~v~v~V~~id~~~~~i~lS~k~~~~~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l--~~~v~glv~~s~l 392 (516)
T TIGR00717 315 SKVVKKGDEVEVMILDIDPERRRLSLGLKQCKANPWEQFEEKHPVGDRVTGKIKKITDFGAFVEL--EGGIDGLIHLSDI 392 (516)
T ss_pred HHhccCCCEEEEEEEEEcCCCCEEEEEehhcccCcHHHHHHhCCCCCEEEEEEEEEecceEEEEC--CCCCEEEEEHHHC
Confidence 67899999999999999999999999998753 3332 234688999999999999999999999 7799999999999
Q ss_pred ccccccccccccccCCCCEEE-EEEEeecCCCeEEEecccccccccccCCCccccCCCCCEEEEEEEEEeeceEEEEECC
Q 000227 705 ADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLG 783 (1826)
Q Consensus 705 sd~~~~~~~l~~~lk~G~~i~-~vl~id~~~~~v~ls~K~sl~~~~~~i~~~~~~~~~G~~~~G~V~~i~~~GvfV~f~~ 783 (1826)
+|.... ....+.|++|+.+. +++.+|.+++++.||+|+++.++|... .+++++|+++.|+|++++++|+||++.+
T Consensus 393 s~~~~~-~~~~~~~~~G~~V~~~Vl~vd~~~~~i~ls~K~~~~~p~~~~---~~~~~~G~~v~g~V~~v~~~G~fV~l~~ 468 (516)
T TIGR00717 393 SWDKDG-READHLYKKGDEIEAVVLAVDKEKKRISLGVKQLTENPWEKF---AAKYKVGSVVKGKVTEIKDFGAFVELPG 468 (516)
T ss_pred cCcccC-CCHhHccCCCCEEEEEEEEEeCcCCEEEEeeccccCCchhhh---hhccCcceEEEEEEEEEecceEEEEcCC
Confidence 984321 12346799999999 899999999999999999998888653 3568899999999999999999999999
Q ss_pred CeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEec
Q 000227 784 RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1826)
Q Consensus 784 gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk 831 (1826)
++.||+|.+++++++..++.+.|++||.|+|+|+++|.+++|+.||+|
T Consensus 469 ~~~Glv~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~id~~~~~i~ls~k 516 (516)
T TIGR00717 469 GVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVVDIDKKNRKVSLSVK 516 (516)
T ss_pred CeEEEEEHHHcCccccccccccCCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999986
No 10
>TIGR00717 rpsA ribosomal protein S1. This model provides trusted hits to most long form (6 repeat) examples of RpsA. Among homologs with only four repeats are some to which other (perhaps secondary) functions have been assigned.
Probab=100.00 E-value=1.6e-53 Score=548.18 Aligned_cols=501 Identities=20% Similarity=0.297 Sum_probs=418.6
Q ss_pred ccCCCCEEEEEEEEEEccEEEEEecCCCceEEEEecccccccCCCcccccCCCEEEEEEEeecCCCcccceeeeeccccc
Q 000227 967 DLGVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALPSSSTAGRLLLLLKAISE 1046 (1826)
Q Consensus 967 ~L~~G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~n~~~~~~~~f~vGq~v~a~V~~~~~~~~~~~l~Ll~~~~~~ 1046 (1826)
.+++|+.+.|+|..+++++++|+| +++..|++|.+++.. +...|++||.+.+.|..++ +..+++.|......
T Consensus 15 ~~~~G~~v~g~V~~i~~~~~~v~~--g~k~~g~i~~~E~~~---~~~~~~vGd~i~~~V~~~~--~~~g~i~lS~~~~~- 86 (516)
T TIGR00717 15 ETRPGSIVKGTVVAINKDTVFVDV--GLKSEGRIPKEEFLD---APLEIQVGDEVEVYLDRVE--DRFGETVLSREKAQ- 86 (516)
T ss_pred cCCCCCEEEEEEEEEECCEEEEEc--CCCcEEEEEHHHhcC---CccCCCCCCEEEEEEEEEe--CCCCcEEEEHHHhh-
Confidence 478999999999999999999999 799999999999852 2256999999999999885 45677665443211
Q ss_pred cccchhHHhhcccCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEEceeccCCcccccccccccccCCCEEEEEEEeeec
Q 000227 1047 TETSSSKRAKKKSSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSN 1126 (1826)
Q Consensus 1047 ~~~~~~~~~~~~~~~~~G~~v~~~V~~ik~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~P~~~~~~G~~v~~~Vl~~~~ 1126 (1826)
....+..-...+..|++|+|+|.++.+.|+.|+++ ++.|+++.+++.+... .+ ....+|+.++++|+.++.
T Consensus 87 ---~~~~~~~l~~a~~~g~~v~g~V~~~~~~g~~V~i~-g~~~flP~s~~~~~~~---~~--~~~~vG~~i~~~v~~~~~ 157 (516)
T TIGR00717 87 ---RHELWIKLEKAYEEGSIVEGKIVGKVKGGFIVDLN-GVEAFLPGSQVDVKPI---KD--LDSLIGKTLKFKIIKLDQ 157 (516)
T ss_pred ---hhHHHHHHHHHhhCCCeEEEEEEEEECCEEEEEEC-CEEEEEeHHHhcCccc---Cc--hhhhCCCEEEEEEEEEEC
Confidence 11123333456789999999999999999999998 7899999999854321 11 245799999999999984
Q ss_pred CCCCccceeEEEeeccccccccccccccccccccCCCCCEEEEEEEEEeCCEEEEEECCCceEEEEccccCCCCchhhhh
Q 000227 1127 KPDMKKSFLWELSIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF 1206 (1826)
Q Consensus 1127 ~~~~~k~~~veLS~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~V~i~~~~~g~l~~~~~s~~~~~l~~~ 1206 (1826)
+ ...+.||+|+.+-..........++. +++|+.+.|+|.++.++++||+++ +++|++|.+++++.. ..++
T Consensus 158 ~-----~~~iv~Srk~~l~~~~~~~~~~~~~~--l~~G~~v~g~V~~i~~~G~~V~l~-g~~g~lp~~e~s~~~--~~~~ 227 (516)
T TIGR00717 158 K-----RNNIVVSRRAYLEEERSQAREELLEN--LKEGDVVKGVVKNITDFGAFVDLG-GVDGLLHITDMSWKR--VKHP 227 (516)
T ss_pred C-----CCcEEEEHHHHHHHHHHHHHHHHHHh--ccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCCCC--CCCH
Confidence 2 23588998875433211000112333 699999999999999999999996 799999999999864 3567
Q ss_pred ccccCCCCEEEEEEEEEeCCCcEEEEEecccccCCCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEECCceE
Q 000227 1207 QRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLY 1286 (1826)
Q Consensus 1207 ~~~f~vG~~v~v~V~~vd~~~~~l~LS~~~~~~~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~~ 1286 (1826)
...|++|+.+.|+|+.+|.+++++.||++... .++|......++ +|+++.|+|+++.++ |+||++++++.
T Consensus 228 ~~~~~vG~~v~v~Vl~~d~~~~~i~lS~k~~~---~~p~~~~~~~~~-----~G~i~~g~V~~v~~~--G~fV~l~~~v~ 297 (516)
T TIGR00717 228 SEYVKVGQEVKVKVIKFDKEKGRISLSLKQLG---EDPWEAIEKKFP-----VGDKITGRVTNLTDY--GVFVEIEEGIE 297 (516)
T ss_pred HHhccCCCEEEEEEEEEECCCCcEEEEEEecc---hhHHHHHHhhcc-----CCCEEEEEEEEeeCC--cEEEEeCCCCE
Confidence 77899999999999999999999999998763 456765444455 999999999999999 99999999999
Q ss_pred EEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecccCCceEEEEEeeeccCCCCCCCCCCCCCCCCCC
Q 000227 1287 GRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTP 1366 (1826)
Q Consensus 1287 G~v~~sel~d~~~~~~~~~~~~~~~~p~~~f~~G~~V~~~Vl~id~~~~g~~~i~LS~r~s~~~~~~~~~~~~~~~~~~~ 1366 (1826)
|++|++|++++... .+|...|++|+.|+|+|+++|.+ ++++.||+|.+. .
T Consensus 298 g~v~~sels~~~~~----------~~~~~~~~vG~~v~v~V~~id~~---~~~i~lS~k~~~-----~------------ 347 (516)
T TIGR00717 298 GLVHVSEMSWVKKN----------SHPSKVVKKGDEVEVMILDIDPE---RRRLSLGLKQCK-----A------------ 347 (516)
T ss_pred EEEEHHHcCCcccc----------CCHHHhccCCCEEEEEEEEEcCC---CCEEEEEehhcc-----c------------
Confidence 99999999864211 12556789999999999999986 579999999875 2
Q ss_pred cccccccccCCCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCcc-CCCCccCCCCcEEEEEEEEEeCCCCeEEE
Q 000227 1367 GKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445 (1826)
Q Consensus 1367 ~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v-~~~~~~f~vGq~V~~kVl~vd~e~~rI~l 1445 (1826)
+++....+++++|+++.|+|++++++|+||+|+++++|+||+++++|.+. .++...|++||.|.|+|+++|+++++|.|
T Consensus 348 ~p~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~~~v~glv~~s~ls~~~~~~~~~~~~~~G~~V~~~Vl~vd~~~~~i~l 427 (516)
T TIGR00717 348 NPWEQFEEKHPVGDRVTGKIKKITDFGAFVELEGGIDGLIHLSDISWDKDGREADHLYKKGDEIEAVVLAVDKEKKRISL 427 (516)
T ss_pred CcHHHHHHhCCCCCEEEEEEEEEecceEEEECCCCCEEEEEHHHCcCcccCCCHhHccCCCCEEEEEEEEEeCcCCEEEE
Confidence 23444556789999999999999999999999999999999999999765 46778999999999999999999999999
Q ss_pred EEeccccccccccccccccccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEE
Q 000227 1446 TLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKIL 1525 (1826)
Q Consensus 1446 Slk~s~~~~~~~~~~~~~~~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl 1525 (1826)
|+|++..+||.. ...++++|+++.|+|+++++||+||.|++ ++.||||+|++++++++++.+.|++||.|+++|+
T Consensus 428 s~K~~~~~p~~~----~~~~~~~G~~v~g~V~~v~~~G~fV~l~~-~~~Glv~~s~l~~~~~~~~~~~~~~Gd~v~~~V~ 502 (516)
T TIGR00717 428 GVKQLTENPWEK----FAAKYKVGSVVKGKVTEIKDFGAFVELPG-GVEGLIRNSELSENRDEDKTDEIKVGDEVEAKVV 502 (516)
T ss_pred eeccccCCchhh----hhhccCcceEEEEEEEEEecceEEEEcCC-CeEEEEEHHHcCccccccccccCCCCCEEEEEEE
Confidence 999998887643 24678999999999999999999999986 7999999999999999999999999999999999
Q ss_pred EEeCCCCeEEEeee
Q 000227 1526 KVDKEKRRISLGMK 1539 (1826)
Q Consensus 1526 ~id~e~~rI~LslK 1539 (1826)
++|.+++||+||+|
T Consensus 503 ~id~~~~~i~ls~k 516 (516)
T TIGR00717 503 DIDKKNRKVSLSVK 516 (516)
T ss_pred EEeCCCCEEEEEEC
Confidence 99999999999987
No 11
>PRK13806 rpsA 30S ribosomal protein S1; Provisional
Probab=100.00 E-value=2.1e-50 Score=509.08 Aligned_cols=419 Identities=19% Similarity=0.289 Sum_probs=357.9
Q ss_pred cCCCCCCEEEEEEEEEeCCeEEEEeCCCeeEEEEceeccCCcccccccccccccCCCEEEEEEEeeecCCCCccceeEEE
Q 000227 1059 SSYDVGSLVQAEITEIKPLELRLKFGIGFHGRIHITEVNDDKSNVVENLFSNFKIGQTVTARIIAKSNKPDMKKSFLWEL 1138 (1826)
Q Consensus 1059 ~~~~~G~~v~~~V~~ik~~~l~V~l~~~~~G~i~~se~~d~~~~~~~~P~~~~~~G~~v~~~Vl~~~~~~~~~k~~~veL 1138 (1826)
..+..|++|+|+|+++.++++.|+++.+..|+|+.+|+.+.+.+ ..+++|+.|+|+|++++. ..+.|
T Consensus 30 ~~~~~G~~v~G~V~~v~~~~v~Vdig~k~eg~ip~~e~~~~~~~------~~~~~G~~i~~~Vi~~~~-------~~~~l 96 (491)
T PRK13806 30 TELRVGDKITGTVIAITEDSVFVDTGSKVDGVVDRAELLDADGE------LTVAVGDEVELYVVSVNG-------QEIRL 96 (491)
T ss_pred ccCCCCCEEEEEEEEEECCEEEEEECCCcEEEEEHHHhcCcccc------ccccCCCEEEEEEEEEcC-------CEEEE
Confidence 34889999999999999999999999999999999999764321 358999999999999861 24888
Q ss_pred eeccccccccccccccccccccCCCCCEEEEEEEEEeCCEEEEEECCCceEEEEccccCCCCchhhhhccccCCCCEEEE
Q 000227 1139 SIKPSMLTVSEIGSKLLFEECDVSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTG 1218 (1826)
Q Consensus 1139 S~r~~~l~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~~l~V~i~~~~~g~l~~~~~s~~~~~l~~~~~~f~vG~~v~v 1218 (1826)
|.+... ... ...+.+ .++.|+.++|+|.++.++|++|++. +++|++|.+++++.. ..++.. + +|+.+.|
T Consensus 97 S~~~~~-~~~----~~~l~~-~~~~g~~v~g~V~~~~~~G~~V~i~-g~~~flP~s~~~~~~--~~~~~~-~-vG~~i~~ 165 (491)
T PRK13806 97 SKALSG-QGG----AAMLEE-AYENGVPVEGKVTGTCKGGFNVEVL-GRRAFCPVSQIDLRY--VEDPES-Y-VGQTFQF 165 (491)
T ss_pred EhHHhh-hhh----HHHHHH-HHhCCCEEEEEEEEEEcCCEEEEEC-CEEEEEEHHHhcccc--CCChHH-c-CCCeEEE
Confidence 865321 111 111222 3689999999999999999999997 899999999988763 223332 3 9999999
Q ss_pred EEEEEeCCCcEEEEEecccccCC-CCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEECCceEEEEeccccccc
Q 000227 1219 HVLSINKEKKLLRLVLRPFQDGI-SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNI 1297 (1826)
Q Consensus 1219 ~V~~vd~~~~~l~LS~~~~~~~~-~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~sel~d~ 1297 (1826)
+|+.+|.+++++.||++...... ...|...... +++|+++.|+|+++.++ |+||+|+.++.|+||++|++++
T Consensus 166 ~V~~id~~~~~v~lSrk~~~~~~~~~~~~~~~~~-----l~~G~iv~G~V~~v~~~--G~fV~l~~gv~g~v~~sels~~ 238 (491)
T PRK13806 166 LITRVEENGRNIVVSRRALLEREQKEALEAFMET-----VKEGDVVEGTVTRLAPF--GAFVELAPGVEGMVHISELSWS 238 (491)
T ss_pred EEEEEECCCCeEEEEeehhhhhhhHHHHHHHHhh-----CCCCCEEEEEEEEEeCC--eEEEEcCCCcEEEEEHHHCCCc
Confidence 99999999999999998765332 2344433334 44999999999999999 9999998899999999999988
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecccCC-ceEEEEEeeeccCCCCCCCCCCCCCCCCCCcccccccccC
Q 000227 1298 CVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG-TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL 1376 (1826)
Q Consensus 1298 ~~~~~~~~~~~~~~~p~~~f~~G~~V~~~Vl~id~~~~g-~~~i~LS~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 1376 (1826)
+..+ |...|++|+.|+|+|+++|.+.++ ..++.||+|++. . +++.....++
T Consensus 239 ~~~~-----------~~~~~~vGd~i~vkVl~id~~~~~~~~ri~lS~K~~~-----~------------~p~~~~~~~~ 290 (491)
T PRK13806 239 RVQK-----------ADEAVSVGDTVRVKVLGIERAKKGKGLRISLSIKQAG-----G------------DPWDTVGDRL 290 (491)
T ss_pred cccC-----------hhHhcCCCCEEEEEEEEEecccCCcceEEEEEehhhh-----c------------ccchhhhccC
Confidence 8776 788899999999999999986310 157999999885 2 2455556789
Q ss_pred CCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCC-CccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEeccccccc
Q 000227 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD-GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd-~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~~~~~ 1455 (1826)
++|+++.|+|++++++|+||+|+++++|+||+++|+| .++.+|.+.|++||.|+++|+++|++++||.||+|++..+||
T Consensus 291 ~~G~~v~G~V~~v~~~G~fV~l~~gv~Glvh~sels~~~~~~~~~~~~~~Gd~v~vkVl~iD~e~~ri~Ls~K~~~~~p~ 370 (491)
T PRK13806 291 KAGDKVTGKVVRLAPFGAFVEILPGIEGLVHVSEMSWTRRVNKPEDVVAPGDAVAVKIKDIDPAKRRISLSLRDAEGDPW 370 (491)
T ss_pred CCCCEEEEEEEEEeCceEEEEeCCCcEEEEEHHHcCcccccCCHHHcCCCCCEEEEEEEEEEccCCEEEEEEeecccChh
Confidence 9999999999999999999999999999999999998 577889999999999999999999999999999999999887
Q ss_pred cccccccccccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEE
Q 000227 1456 SQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRIS 1535 (1826)
Q Consensus 1456 ~~~~~~~~~~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~ 1535 (1826)
... ..++++|++|+|+|+++++||+||+|.+ +++||||+|++++.+..++.+.|++||.|+|+|+++|++++||+
T Consensus 371 ~~~----~~~~~vG~~v~G~V~~i~~~G~FV~l~~-gv~Gli~~se~s~~~~~~~~~~~~~Gd~v~~~V~~id~e~~ri~ 445 (491)
T PRK13806 371 ADV----AERFAPGTTVTGTVEKRAQFGLFVNLAP-GVTGLLPASVISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKIS 445 (491)
T ss_pred HHh----hhhCCCCCEEEEEEEEEecCceEEEcCC-CcEEEEEHHHcCcccccchhhcCCCCCEEEEEEEEEeCCCCEEE
Confidence 653 5689999999999999999999999987 89999999999999998889999999999999999999999999
Q ss_pred Eeeecc
Q 000227 1536 LGMKSS 1541 (1826)
Q Consensus 1536 LslK~s 1541 (1826)
||+|..
T Consensus 446 Ls~~~~ 451 (491)
T PRK13806 446 LAPAGA 451 (491)
T ss_pred EEeehh
Confidence 999963
No 12
>PRK13806 rpsA 30S ribosomal protein S1; Provisional
Probab=100.00 E-value=4.9e-48 Score=487.51 Aligned_cols=411 Identities=20% Similarity=0.287 Sum_probs=353.5
Q ss_pred CCCCCCEEEeEEEEEEeCCceEEEEcCCCCCccceeeeccchhhHHHHhhhhhccCCCEEEEEEEEEEeCCCeEEEEecc
Q 000227 404 HVKVGDIYDQSKVVRVDRGLGLLLDIPSTPVSTPAYVTISDVAEEEVRKLEKKYKEGSCVRVRILGFRHLEGLATGILKA 483 (1826)
Q Consensus 404 ~~~~G~iv~~~~V~~v~~~~Gl~v~i~~~~~~v~gfv~~s~~~~~~v~~~~~~~~vG~~~~~rVi~~~~~d~~~~ls~k~ 483 (1826)
.+..|++++ ++|++++.+ |++|+++.+ ..||+|.+++.+.. ....|++|++++|+|++++. +.+.+|.+.
T Consensus 31 ~~~~G~~v~-G~V~~v~~~-~v~Vdig~k---~eg~ip~~e~~~~~---~~~~~~~G~~i~~~Vi~~~~--~~~~lS~~~ 100 (491)
T PRK13806 31 ELRVGDKIT-GTVIAITED-SVFVDTGSK---VDGVVDRAELLDAD---GELTVAVGDEVELYVVSVNG--QEIRLSKAL 100 (491)
T ss_pred cCCCCCEEE-EEEEEEECC-EEEEEECCC---cEEEEEHHHhcCcc---ccccccCCCEEEEEEEEEcC--CEEEEEhHH
Confidence 488999997 789999998 999999864 38999999886421 11248999999999999874 457777553
Q ss_pred ccccccccccccCCCCcEEEEEEEEEecCcEEEEeCCCeEEeecCCCcccccccCCCCCcCCCCEEEEEEEEE--eCCeE
Q 000227 484 SAFEGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRI 561 (1826)
Q Consensus 484 ~~~~~~~~~~~~l~~G~iv~g~V~~v~~~G~~V~i~~~v~G~Vp~~hlsd~~l~~p~~~fkvG~~Vk~rVL~v--~~~~i 561 (1826)
.....+....+.+.+|++|+|+|+++.++|++|++. |+.||+|.+|+++....+|+. | +|++++|+|+.+ .++++
T Consensus 101 ~~~~~~~~l~~~~~~g~~v~g~V~~~~~~G~~V~i~-g~~~flP~s~~~~~~~~~~~~-~-vG~~i~~~V~~id~~~~~v 177 (491)
T PRK13806 101 SGQGGAAMLEEAYENGVPVEGKVTGTCKGGFNVEVL-GRRAFCPVSQIDLRYVEDPES-Y-VGQTFQFLITRVEENGRNI 177 (491)
T ss_pred hhhhhHHHHHHHHhCCCEEEEEEEEEEcCCEEEEEC-CEEEEEEHHHhccccCCChHH-c-CCCeEEEEEEEEECCCCeE
Confidence 322333444677899999999999999999999997 899999999999866667664 4 999999999999 45799
Q ss_pred EEEecchhhccchhhccc-cccccCCcEEEEEEEEEecceEEEEEcCCeEEEEeCcccCCCCCCCCCCCccCCCEEEEEE
Q 000227 562 TVTHKKTLVKSKLAILSS-YAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRI 640 (1826)
Q Consensus 562 ~LSlK~~Lv~~~~~~~~s-~~~~~~G~~~~G~V~~i~~~G~~V~~~~gv~G~vp~sel~~~~~~~~~~~~~vGq~V~vrV 640 (1826)
.||+|..+.......|.. +..+++|+++.|+|+++.++|+||++++++.||+|.++++|.+..+|.+.|++||.|+|+|
T Consensus 178 ~lSrk~~~~~~~~~~~~~~~~~l~~G~iv~G~V~~v~~~G~fV~l~~gv~g~v~~sels~~~~~~~~~~~~vGd~i~vkV 257 (491)
T PRK13806 178 VVSRRALLEREQKEALEAFMETVKEGDVVEGTVTRLAPFGAFVELAPGVEGMVHISELSWSRVQKADEAVSVGDTVRVKV 257 (491)
T ss_pred EEEeehhhhhhhHHHHHHHHhhCCCCCEEEEEEEEEeCCeEEEEcCCCcEEEEEHHHCCCccccChhHhcCCCCEEEEEE
Confidence 999998776544344444 3457899999999999999999999988999999999999988889999999999999999
Q ss_pred EEEccCC----CEEEEEEeeCC-CCCcc-cccccCCCEEEEEEEEEecCeEEEEEEecCceEEEeeCccccccccccccc
Q 000227 641 MSSIPAS----RRINLSFMMKP-TRVSE-DDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVM 714 (1826)
Q Consensus 641 l~vd~~~----~ri~lS~k~~~-~~~~~-~~~~~vG~iv~g~V~~v~~~g~~V~l~~~~~v~G~i~~~hLsd~~~~~~~l 714 (1826)
+++|+++ +|+.||+++.. ++|.. ...+++|+++.|+|++++++|+||++ .++++|+||.++|+|... ....
T Consensus 258 l~id~~~~~~~~ri~lS~K~~~~~p~~~~~~~~~~G~~v~G~V~~v~~~G~fV~l--~~gv~Glvh~sels~~~~-~~~~ 334 (491)
T PRK13806 258 LGIERAKKGKGLRISLSIKQAGGDPWDTVGDRLKAGDKVTGKVVRLAPFGAFVEI--LPGIEGLVHVSEMSWTRR-VNKP 334 (491)
T ss_pred EEEecccCCcceEEEEEehhhhcccchhhhccCCCCCEEEEEEEEEeCceEEEEe--CCCcEEEEEHHHcCcccc-cCCH
Confidence 9999987 48999998763 34443 46789999999999999999999999 779999999999997321 1224
Q ss_pred ccccCCCCEEE-EEEEeecCCCeEEEecccccccccccCCCccccCCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCC
Q 000227 715 KSVIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSK 793 (1826)
Q Consensus 715 ~~~lk~G~~i~-~vl~id~~~~~v~ls~K~sl~~~~~~i~~~~~~~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~ 793 (1826)
.+.+++||.++ +++.+|.+++++.||+|+...++|..+. +++++|++++|+|+++++||+||++.+|+.||||+++
T Consensus 335 ~~~~~~Gd~v~vkVl~iD~e~~ri~Ls~K~~~~~p~~~~~---~~~~vG~~v~G~V~~i~~~G~FV~l~~gv~Gli~~se 411 (491)
T PRK13806 335 EDVVAPGDAVAVKIKDIDPAKRRISLSLRDAEGDPWADVA---ERFAPGTTVTGTVEKRAQFGLFVNLAPGVTGLLPASV 411 (491)
T ss_pred HHcCCCCCEEEEEEEEEEccCCEEEEEEeecccChhHHhh---hhCCCCCEEEEEEEEEecCceEEEcCCCcEEEEEHHH
Confidence 56799999999 8999999999999999999999998754 4688999999999999999999999999999999999
Q ss_pred cCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEeccc
Q 000227 794 AVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1826)
Q Consensus 794 l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~ 833 (1826)
++|++..++.+.|++||.|+|+|+++|++++|++||++..
T Consensus 412 ~s~~~~~~~~~~~~~Gd~v~~~V~~id~e~~ri~Ls~~~~ 451 (491)
T PRK13806 412 ISRAGKPATYEKLKPGDSVTLVVEEIDTAKRKISLAPAGA 451 (491)
T ss_pred cCcccccchhhcCCCCCEEEEEEEEEeCCCCEEEEEeehh
Confidence 9999999999999999999999999999999999999965
No 13
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=2.3e-43 Score=436.80 Aligned_cols=333 Identities=27% Similarity=0.389 Sum_probs=292.6
Q ss_pred CCCCCEEEEEEEEEeCCEEEEEECCCceEEEEccccCCCCchhhhhccccCCCCEEEEEEEEEeCCCcEEEEEecccccC
Q 000227 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240 (1826)
Q Consensus 1161 ~~~G~~v~g~V~~v~~~~l~V~i~~~~~g~l~~~~~s~~~~~l~~~~~~f~vG~~v~v~V~~vd~~~~~l~LS~~~~~~~ 1240 (1826)
+++|+.|.|+|.++.++++||+|+++++|+||..++++.. ..++...|++|+.|+|+|++++++++++.||++....
T Consensus 33 ~~~GdiV~G~V~~v~~~gv~VdIg~k~eG~Ip~~Els~~~--~~~~~~~~~vGd~Ie~~V~~~~~~~g~liLS~k~~~~- 109 (486)
T PRK07899 33 FNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKH--DVDPNEVVEVGDEVEALVLQKEDKEGRLILSKKRAQY- 109 (486)
T ss_pred CCCCCEEEEEEEEEECCcEEEEECCCcEEEEEHHHhcccc--cCChhhcCCCCCEEEEEEEEEECCCCeEEEEehhhcc-
Confidence 6999999999999999999999999999999999999864 3467778999999999999999999999999998642
Q ss_pred CCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEECCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCC
Q 000227 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320 (1826)
Q Consensus 1241 ~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~f~~G 1320 (1826)
...|..+.+.+. .|+++.|+|+++.++ |++|++ |++|++|.++++..+..+ +. .+ +|
T Consensus 110 -~~~w~~ie~~~e-----~g~~V~G~V~~v~k~--G~~Vdl--Gi~gflP~Sel~~~~~~~-----------~~-~~-vG 166 (486)
T PRK07899 110 -ERAWGTIEKIKE-----KDGVVTGTVIEVVKG--GLILDI--GLRGFLPASLVEMRRVRD-----------LQ-PY-IG 166 (486)
T ss_pred -cchHHHHHHHhc-----CCCEEEEEEEEEECC--eEEEEE--CCEEEEEhhHhcccccCC-----------hh-hc-CC
Confidence 345655444444 899999999999998 999999 589999999997655443 32 23 89
Q ss_pred CEEEEEEEEEecccCCceEEEEEeeeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCEEEEEEEEEecceEEEEeCC
Q 000227 1321 QFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSR 1400 (1826)
Q Consensus 1321 ~~V~~~Vl~id~~~~g~~~i~LS~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~ 1400 (1826)
+.|+|+|+++|++ ++++.||+|... ... ...++...+.++++|+++.|+|++++++|+||+|+
T Consensus 167 q~V~vkVleid~~---~~~ivLSrr~~l-----~~~--------~~~~~~~~~~~lk~G~iv~G~V~~i~~~G~FVdlg- 229 (486)
T PRK07899 167 QEIEAKIIELDKN---RNNVVLSRRAWL-----EQT--------QSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLG- 229 (486)
T ss_pred CEEEEEEEEEECC---CCEEEEEhHHHH-----Hhh--------hHHHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-
Confidence 9999999999986 579999999764 100 01234455678999999999999999999999997
Q ss_pred CeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEeccccccccccccccccccCCCCEEEEEEEEEe
Q 000227 1401 KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVE 1480 (1826)
Q Consensus 1401 ~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~~~~~~~~~~~~~~~~~~G~iv~G~V~~v~ 1480 (1826)
+++||||+++|+|.++.+|.+.|++||.|+++|+++|++++||.||+|+...+||.. ....+++|+++.|+|+++.
T Consensus 230 gv~Glv~~Sels~~~v~~~~~~~kvGd~V~vkVl~iD~e~~rI~LSlK~~~~dPw~~----~~~~~~vG~vv~G~V~~I~ 305 (486)
T PRK07899 230 GVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQ----FARTHAIGQIVPGKVTKLV 305 (486)
T ss_pred CEEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeeccccchhh----hHHhcCCCCEEEEEEEEEe
Confidence 799999999999999999999999999999999999999999999999999988753 2456889999999999999
Q ss_pred eceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeecc
Q 000227 1481 SYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1826)
Q Consensus 1481 ~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s 1541 (1826)
+||+||+|.+ ++.||||+|++++.++.++.+.|++||.|+|+|+++|.+++||+||+|+.
T Consensus 306 ~fGvFVeL~~-gieGLvh~SeLs~~~v~~~~~~~kvGd~V~VkIi~ID~e~rrI~LSlK~~ 365 (486)
T PRK07899 306 PFGAFVRVEE-GIEGLVHISELAERHVEVPEQVVQVGDEVFVKVIDIDLERRRISLSLKQA 365 (486)
T ss_pred ccEEEEEeCC-CcEEEEEHHHcCcccccCccceeCCCCEEEEEEEEEECCCCEEEEEEEEc
Confidence 9999999986 79999999999999988888999999999999999999999999999985
No 14
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=2.9e-42 Score=426.90 Aligned_cols=328 Identities=21% Similarity=0.264 Sum_probs=290.5
Q ss_pred cccCCCCcEEEEEEEEEecCcEEEEeCCCeEEeecCCCcccccccCCCCCcCCCCEEEEEEEEE--eCCeEEEEecchhh
Q 000227 493 HSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKKTLV 570 (1826)
Q Consensus 493 ~~~l~~G~iv~g~V~~v~~~G~~V~i~~~v~G~Vp~~hlsd~~l~~p~~~fkvG~~Vk~rVL~v--~~~~i~LSlK~~Lv 570 (1826)
+..+++|++|+|+|+++.++|++|+|+.+++|+||..|+++.+..+|++.|++|++|+|.|+.+ ..+++.||+|+...
T Consensus 30 ~~~~~~GdiV~G~V~~v~~~gv~VdIg~k~eG~Ip~~Els~~~~~~~~~~~~vGd~Ie~~V~~~~~~~g~liLS~k~~~~ 109 (486)
T PRK07899 30 IKYFNDGDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVEVGDEVEALVLQKEDKEGRLILSKKRAQY 109 (486)
T ss_pred HhcCCCCCEEEEEEEEEECCcEEEEECCCcEEEEEHHHhcccccCChhhcCCCCCEEEEEEEEEECCCCeEEEEehhhcc
Confidence 4569999999999999999999999988999999999999988889999999999999999999 35799999998754
Q ss_pred ccchhhccccccc-cCCcEEEEEEEEEecceEEEEEcCCeEEEEeCcccCCCCCCCCCCCccCCCEEEEEEEEEccCCCE
Q 000227 571 KSKLAILSSYAEA-TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRR 649 (1826)
Q Consensus 571 ~~~~~~~~s~~~~-~~G~~~~G~V~~i~~~G~~V~~~~gv~G~vp~sel~~~~~~~~~~~~~vGq~V~vrVl~vd~~~~r 649 (1826)
. ..|..++++ +.|+++.|+|+++.++|+||+| |++||+|.|++++.++.++.. .+||+|+|+|+++|+++++
T Consensus 110 ~---~~w~~ie~~~e~g~~V~G~V~~v~k~G~~Vdl--Gi~gflP~Sel~~~~~~~~~~--~vGq~V~vkVleid~~~~~ 182 (486)
T PRK07899 110 E---RAWGTIEKIKEKDGVVTGTVIEVVKGGLILDI--GLRGFLPASLVEMRRVRDLQP--YIGQEIEAKIIELDKNRNN 182 (486)
T ss_pred c---chHHHHHHHhcCCCEEEEEEEEEECCeEEEEE--CCEEEEEhhHhcccccCChhh--cCCCEEEEEEEEEECCCCE
Confidence 3 356777666 4799999999999999999999 699999999999876666654 3999999999999999999
Q ss_pred EEEEEeeCCC-----CC-cccccccCCCEEEEEEEEEecCeEEEEEEecCceEEEeeCcccccccccccccccccCCCCE
Q 000227 650 INLSFMMKPT-----RV-SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYE 723 (1826)
Q Consensus 650 i~lS~k~~~~-----~~-~~~~~~~vG~iv~g~V~~v~~~g~~V~l~~~~~v~G~i~~~hLsd~~~~~~~l~~~lk~G~~ 723 (1826)
+.||+|.... ++ .....+++|++++|+|++++++|+||.+ ++++|+||.++|||.... ...+.|++||.
T Consensus 183 ivLSrr~~l~~~~~~~~~~~~~~lk~G~iv~G~V~~i~~~G~FVdl---ggv~Glv~~Sels~~~v~--~~~~~~kvGd~ 257 (486)
T PRK07899 183 VVLSRRAWLEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDL---GGVDGLVHVSELSWKHID--HPSEVVEVGQE 257 (486)
T ss_pred EEEEhHHHHHhhhHHHHHHHHHhccCCCEEEEEEEEEECCeEEEEE---CCEEEEEEHHHCCCcccC--CHHHhcCCCCE
Confidence 9999985311 11 1235788999999999999999999999 469999999999985422 23467899999
Q ss_pred EE-EEEEeecCCCeEEEecccccccccccCCCccccCCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCc
Q 000227 724 FD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADL 802 (1826)
Q Consensus 724 i~-~vl~id~~~~~v~ls~K~sl~~~~~~i~~~~~~~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~ 802 (1826)
|+ +|+.+|.++++|.||+|+.+.++|..+. ..+++|+++.|.|++++++|+||++.+|+.||+|.+++++.+..++
T Consensus 258 V~vkVl~iD~e~~rI~LSlK~~~~dPw~~~~---~~~~vG~vv~G~V~~I~~fGvFVeL~~gieGLvh~SeLs~~~v~~~ 334 (486)
T PRK07899 258 VTVEVLDVDMDRERVSLSLKATQEDPWQQFA---RTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVP 334 (486)
T ss_pred EEEEEEEEECCCCEEEEEEeeccccchhhhH---HhcCCCCEEEEEEEEEeccEEEEEeCCCcEEEEEHHHcCcccccCc
Confidence 99 8999999999999999999999986533 3467899999999999999999999999999999999999888899
Q ss_pred ccCCCCCCEEEEEEEEeeCCCCeEEEEeccccc
Q 000227 803 SKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1826)
Q Consensus 803 ~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~~~ 835 (1826)
.+.|++||.|.|+|+++|.+++|+.||+|+...
T Consensus 335 ~~~~kvGd~V~VkIi~ID~e~rrI~LSlK~~~~ 367 (486)
T PRK07899 335 EQVVQVGDEVFVKVIDIDLERRRISLSLKQANE 367 (486)
T ss_pred cceeCCCCEEEEEEEEEECCCCEEEEEEEEccc
Confidence 999999999999999999999999999998865
No 15
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=2.3e-40 Score=411.11 Aligned_cols=335 Identities=24% Similarity=0.306 Sum_probs=293.7
Q ss_pred cccccccccCCCCcEEEEEEEEEecCcEEEEe-CCCeEEeecCCCcccccccCCCCCcCCCCEEEEEEEEE--eCCeEEE
Q 000227 487 EGLVFTHSDVKPGMVVKGKVIAVDSFGAIVQF-PGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITV 563 (1826)
Q Consensus 487 ~~~~~~~~~l~~G~iv~g~V~~v~~~G~~V~i-~~~v~G~Vp~~hlsd~~l~~p~~~fkvG~~Vk~rVL~v--~~~~i~L 563 (1826)
++...++.++++|++|+|+|++++++|++|++ +++++|+||..|+++.+..+|...|++|++|+|+|+.+ +++++.|
T Consensus 6 ~~~~~~~~~~~~G~iv~G~V~~i~~~g~~V~i~~~~~~g~lp~~e~~~~~~~~~~~~~~vGd~v~~~V~~v~~~~~~i~l 85 (390)
T PRK06676 6 EESLNSVKEVEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDHIEDINDVVKVGDELEVYVLKVEDGEGNLLL 85 (390)
T ss_pred HHHhhhhhcccCCCEEEEEEEEEECCeEEEEEecCCcEEEEEHHHhccccccCcccccCCCCEEEEEEEEEECCCCCEEE
Confidence 34455788999999999999999999999999 77999999999999988889999999999999999999 4567999
Q ss_pred Eecchhhccchhhcccccc-ccCCcEEEEEEEEEecceEEEEEcCCeEEEEeCcccCCCCCCCCCCCccCCCEEEEEEEE
Q 000227 564 THKKTLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1826)
Q Consensus 564 SlK~~Lv~~~~~~~~s~~~-~~~G~~~~G~V~~i~~~G~~V~~~~gv~G~vp~sel~~~~~~~~~~~~~vGq~V~vrVl~ 642 (1826)
|+|+.... +.|..+.+ .++|++++|+|+++.++|+||+| +|++||+|.+++++....++.. + +||++.|+|++
T Consensus 86 S~k~~~~~---~~~~~~~~~~~~G~~v~g~V~~v~~~G~~V~~-~G~~gflp~~el~~~~~~~~~~-~-vG~~v~~~Vl~ 159 (390)
T PRK06676 86 SKRRLEAE---KAWDKLEEKFEEGEVVEVKVTEVVKGGLVVDV-EGVRGFIPASLISTRFVEDFSD-F-KGKTLEVKIIE 159 (390)
T ss_pred EHHHhhhh---hhHHHHHHhccCCCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHcCCccCCChHH-c-CCCEEEEEEEE
Confidence 99986432 34555443 47899999999999999999999 6889999999999876666654 3 99999999999
Q ss_pred EccCCCEEEEEEeeCCCC-----C-cccccccCCCEEEEEEEEEecCeEEEEEEecCceEEEeeCccccccccccccccc
Q 000227 643 SIPASRRINLSFMMKPTR-----V-SEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKS 716 (1826)
Q Consensus 643 vd~~~~ri~lS~k~~~~~-----~-~~~~~~~vG~iv~g~V~~v~~~g~~V~l~~~~~v~G~i~~~hLsd~~~~~~~l~~ 716 (1826)
+|++++++.||++..... + .....+++|++|.|+|++++++|++|.+ ++++|+||.+|+++... ....+
T Consensus 160 ~d~~~~~i~lS~k~~~~~~~~~~~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l---~~v~g~v~~sels~~~~--~~~~~ 234 (390)
T PRK06676 160 LDPEKNRVILSRRAVVEEERAAKKEELLSSLKEGDVVEGTVARLTDFGAFVDI---GGVDGLVHISELSHERV--EKPSE 234 (390)
T ss_pred EECCCCEEEEEeHHHhhhhhhhHHHHHHhhCCCCCEEEEEEEEEecceEEEEe---CCeEEEEEHHHcCcccc--CCHHH
Confidence 999999999999864221 1 1235688999999999999999999999 46999999999998432 23456
Q ss_pred ccCCCCEEE-EEEEeecCCCeEEEecccccccccccCCCccccCCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcC
Q 000227 717 VIKPGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV 795 (1826)
Q Consensus 717 ~lk~G~~i~-~vl~id~~~~~v~ls~K~sl~~~~~~i~~~~~~~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~ 795 (1826)
.+++|+.|+ +++.+|.+++++.||+|+.+.++|..+ ++++++|++++|+|++++++|+||++.+|+.||+|.++++
T Consensus 235 ~~~vGd~i~~~Vl~vd~~~~~i~lS~k~~~~~~~~~~---~~~~~~G~~v~g~V~~i~~~G~fV~l~~gi~Glv~~se~~ 311 (390)
T PRK06676 235 VVSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEGV---EEKLPEGDVIEGTVKRLTDFGAFVEVLPGVEGLVHISQIS 311 (390)
T ss_pred hcCCCCEEEEEEEEEeCCCCEEEEEEeecccCccccc---hhhhcCCcEEEEEEEEEeCceEEEEECCCCeEEEEhHHcC
Confidence 789999999 889999999999999999998888654 4578999999999999999999999999999999999999
Q ss_pred cccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEeccccc
Q 000227 796 DGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1826)
Q Consensus 796 ~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~~~ 835 (1826)
+.+..++.+.|++||.|.|+|+++|++++|+.||+++...
T Consensus 312 ~~~~~~~~~~~~~Gd~v~v~V~~id~e~~~i~ls~k~~~~ 351 (390)
T PRK06676 312 HKHIATPSEVLEEGQEVKVKVLEVNEEEKRISLSIKALEE 351 (390)
T ss_pred ccccCChhhccCCCCEEEEEEEEEECCCCEEEEEEEeccc
Confidence 9888889999999999999999999999999999998764
No 16
>PRK06676 rpsA 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=5.8e-40 Score=407.62 Aligned_cols=336 Identities=26% Similarity=0.426 Sum_probs=294.0
Q ss_pred CCCCCEEEEEEEEEeCCEEEEEE-CCCceEEEEccccCCCCchhhhhccccCCCCEEEEEEEEEeCCCcEEEEEeccccc
Q 000227 1161 VSIGQRVTGYVYKVDNEWALLTI-SRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQD 1239 (1826)
Q Consensus 1161 ~~~G~~v~g~V~~v~~~~l~V~i-~~~~~g~l~~~~~s~~~~~l~~~~~~f~vG~~v~v~V~~vd~~~~~l~LS~~~~~~ 1239 (1826)
+++|+.++|+|.++.++++||++ ++++.|+||..+++++. ..++...|.+|+.|+|.|+.++.+++++.||++....
T Consensus 15 ~~~G~iv~G~V~~i~~~g~~V~i~~~~~~g~lp~~e~~~~~--~~~~~~~~~vGd~v~~~V~~v~~~~~~i~lS~k~~~~ 92 (390)
T PRK06676 15 VEVGDVVTGEVLKVEDKQVFVNIEGYKVEGVIPISELSNDH--IEDINDVVKVGDELEVYVLKVEDGEGNLLLSKRRLEA 92 (390)
T ss_pred ccCCCEEEEEEEEEECCeEEEEEecCCcEEEEEHHHhcccc--ccCcccccCCCCEEEEEEEEEECCCCCEEEEHHHhhh
Confidence 59999999999999999999999 88999999999998763 3566778999999999999999999999999997632
Q ss_pred CCCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEECCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCC
Q 000227 1240 GISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDE 1319 (1826)
Q Consensus 1240 ~~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~f~~ 1319 (1826)
...|......++ +|+++.|+|+++.++ |++|+++ |+.|+||++|+++.|..+ |.. + +
T Consensus 93 --~~~~~~~~~~~~-----~G~~v~g~V~~v~~~--G~~V~~~-G~~gflp~~el~~~~~~~-----------~~~-~-v 149 (390)
T PRK06676 93 --EKAWDKLEEKFE-----EGEVVEVKVTEVVKG--GLVVDVE-GVRGFIPASLISTRFVED-----------FSD-F-K 149 (390)
T ss_pred --hhhHHHHHHhcc-----CCCEEEEEEEEEECC--eEEEEEC-CEEEEEEHHHcCCccCCC-----------hHH-c-C
Confidence 244654434444 999999999999998 9999996 679999999999877654 433 4 8
Q ss_pred CCEEEEEEEEEecccCCceEEEEEeeeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCEEEEEEEEEecceEEEEeC
Q 000227 1320 GQFVKCKVLEISRTVRGTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399 (1826)
Q Consensus 1320 G~~V~~~Vl~id~~~~g~~~i~LS~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~ 1399 (1826)
|+.++|+|+++|++ ++++.||+|... ... ...++...+.++++|++|.|+|++++++|+||+++
T Consensus 150 G~~v~~~Vl~~d~~---~~~i~lS~k~~~-----~~~--------~~~~~~~~~~~~~~G~~v~g~V~~v~~~G~fV~l~ 213 (390)
T PRK06676 150 GKTLEVKIIELDPE---KNRVILSRRAVV-----EEE--------RAAKKEELLSSLKEGDVVEGTVARLTDFGAFVDIG 213 (390)
T ss_pred CCEEEEEEEEEECC---CCEEEEEeHHHh-----hhh--------hhhHHHHHHhhCCCCCEEEEEEEEEecceEEEEeC
Confidence 99999999999986 679999999864 100 01123344567899999999999999999999997
Q ss_pred CCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEeccccccccccccccccccCCCCEEEEEEEEE
Q 000227 1400 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1479 (1826)
Q Consensus 1400 ~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~~~~~~~~~~~~~~~~~~G~iv~G~V~~v 1479 (1826)
+++|+||+++++|.++.+|.+.|++|+.|+++|+++|+++++|.||+|+...+||.. ...++++|+++.|+|+++
T Consensus 214 -~v~g~v~~sels~~~~~~~~~~~~vGd~i~~~Vl~vd~~~~~i~lS~k~~~~~~~~~----~~~~~~~G~~v~g~V~~i 288 (390)
T PRK06676 214 -GVDGLVHISELSHERVEKPSEVVSVGQEVEVKVLSIDWETERISLSLKDTLPGPWEG----VEEKLPEGDVIEGTVKRL 288 (390)
T ss_pred -CeEEEEEHHHcCccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEeecccCcccc----chhhhcCCcEEEEEEEEE
Confidence 799999999999999999999999999999999999999999999999988877643 256899999999999999
Q ss_pred eeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeecccc
Q 000227 1480 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1826)
Q Consensus 1480 ~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s~~ 1543 (1826)
.+||+||++.+ ++.||||+|++++.++.++...|++||.|+|+|+++|++++||.||+|+...
T Consensus 289 ~~~G~fV~l~~-gi~Glv~~se~~~~~~~~~~~~~~~Gd~v~v~V~~id~e~~~i~ls~k~~~~ 351 (390)
T PRK06676 289 TDFGAFVEVLP-GVEGLVHISQISHKHIATPSEVLEEGQEVKVKVLEVNEEEKRISLSIKALEE 351 (390)
T ss_pred eCceEEEEECC-CCeEEEEhHHcCccccCChhhccCCCCEEEEEEEEEECCCCEEEEEEEeccc
Confidence 99999999986 7999999999999988888899999999999999999999999999998654
No 17
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=100.00 E-value=8.2e-38 Score=407.58 Aligned_cols=335 Identities=24% Similarity=0.405 Sum_probs=295.3
Q ss_pred CCCCCEEEEEEEEEeCCEEEEEECCCceEEEEccccCCCCchhhhhccccCCCCEEEEEEEEEeCCCcEEEEEecccccC
Q 000227 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDG 1240 (1826)
Q Consensus 1161 ~~~G~~v~g~V~~v~~~~l~V~i~~~~~g~l~~~~~s~~~~~l~~~~~~f~vG~~v~v~V~~vd~~~~~l~LS~~~~~~~ 1240 (1826)
+++|+.|.|+|.++.++++||++++...|+||..+++++. ..++.+.|++|+.++|+|++++.+++++.||++.+..
T Consensus 300 l~~G~iV~G~V~~v~~~gv~Vdig~~~~G~lp~~els~~~--~~~~~~~~~vGd~V~v~V~~vd~~~g~i~LS~k~~~~- 376 (647)
T PRK00087 300 IRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLRELTLDE--ISSLKESVKVGDEIEVKVLKLEDEDGYVVLSKKEADR- 376 (647)
T ss_pred ccCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhcccc--cCChhhccCCCCEEEEEEEEEECCCCcEEEEeehhcc-
Confidence 6999999999999999999999999999999999999763 4567788999999999999999999999999997642
Q ss_pred CCCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEECCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCC
Q 000227 1241 ISDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320 (1826)
Q Consensus 1241 ~~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~f~~G 1320 (1826)
...|....+.++ +|+++.|+|+++.++ |++|+++ +++|+||.+|+++.|..+ |. .+ +|
T Consensus 377 -~~~~~~l~~~~~-----~G~iv~g~V~~v~~~--G~~V~lg-gi~gfiP~sel~~~~~~d-----------~~-~~-vG 434 (647)
T PRK00087 377 -EKAWKELEEAFE-----NGEPVKGKVKEVVKG--GLLVDYG-GVRAFLPASHVELGYVED-----------LS-EY-KG 434 (647)
T ss_pred -hhHHHHHHHHhh-----CCCEEEEEEEEEECC--eEEEEEC-CEEEEEEHHHhCccccCC-----------HH-Hh-CC
Confidence 345654444444 999999999999998 9999998 499999999999887665 43 24 89
Q ss_pred CEEEEEEEEEecccCCceE-EEEEeeeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCEEEEEEEEEecceEEEEeC
Q 000227 1321 QFVKCKVLEISRTVRGTFH-VELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLS 1399 (1826)
Q Consensus 1321 ~~V~~~Vl~id~~~~g~~~-i~LS~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~ 1399 (1826)
+.+.|+|+++|++ +++ +.||+|...... ...++...+.++++|+++.|+|+++.++|+||++
T Consensus 435 ~~v~v~Vl~vd~e---~~~~l~lS~k~~~~~~-------------~~~~~~~~~~~l~~G~iV~g~V~~v~~~G~fV~l- 497 (647)
T PRK00087 435 QELEVKIIEFNRK---RRKKVVLSRKAILEEE-------------KEKKKEETWNSLEEGDVVEGEVKRLTDFGAFVDI- 497 (647)
T ss_pred CEEEEEEEEEEcC---CCcEEEEEeHHHhhhh-------------hhhHHHHHHHhCCCCCEEEEEEEEEeCCcEEEEE-
Confidence 9999999999986 456 999998874000 0123445567799999999999999999999999
Q ss_pred CCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEeccccccccccccccccccCCCCEEEEEEEEE
Q 000227 1400 RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRV 1479 (1826)
Q Consensus 1400 ~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~~~~~~~~~~~~~~~~~~G~iv~G~V~~v 1479 (1826)
++++|++|+++++|.++.+|.+.|++||.|.++|+++|++++++.||+|+...+||.. ...++++|+++.|+|+++
T Consensus 498 ~gv~Gll~~sels~~~~~~~~~~~~vGd~V~vkV~~id~~~~~I~lS~K~~~~~p~~~----~~~~~~~G~~v~g~V~~i 573 (647)
T PRK00087 498 GGVDGLLHVSEISWGRVEKPSDVLKVGDEIKVYILDIDKENKKLSLSLKKLLPDPWEN----VEEKYPVGSIVLGKVVRI 573 (647)
T ss_pred CCEEEEEEHHHcCccccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEeeccccChhhh----hhhhccCCeEEEEEEEEE
Confidence 6999999999999999999999999999999999999999999999999999888754 246789999999999999
Q ss_pred eeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeeccc
Q 000227 1480 ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1542 (1826)
Q Consensus 1480 ~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s~ 1542 (1826)
.+||+||+|.+ ++.||||++++++.++.++.+.|++||.|+|+|+++|++++||.||+|...
T Consensus 574 ~~~G~fV~l~~-~i~Gli~~sel~~~~~~~~~~~~kvGd~V~vkV~~id~e~~rI~lslk~~~ 635 (647)
T PRK00087 574 APFGAFVELEP-GVDGLVHISQISWKRIDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVE 635 (647)
T ss_pred ECCeEEEEECC-CCEEEEEhhhcCccccCCHhhcCCCCCEEEEEEEEEeCCCCEEEEEEeecc
Confidence 99999999976 799999999999999999999999999999999999999999999999853
No 18
>PRK00087 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein; Reviewed
Probab=100.00 E-value=6e-37 Score=399.51 Aligned_cols=332 Identities=23% Similarity=0.281 Sum_probs=292.4
Q ss_pred ccccccCCCCcEEEEEEEEEecCcEEEEeCCCeEEeecCCCcccccccCCCCCcCCCCEEEEEEEEE--eCCeEEEEecc
Q 000227 490 VFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV--KSKRITVTHKK 567 (1826)
Q Consensus 490 ~~~~~~l~~G~iv~g~V~~v~~~G~~V~i~~~v~G~Vp~~hlsd~~l~~p~~~fkvG~~Vk~rVL~v--~~~~i~LSlK~ 567 (1826)
......+++|++|+|+|.++.++|++|+++++.+|++|..|+++....+|.+.|++|+.|+|+|+++ ..+++.||+|+
T Consensus 294 ~~~~~~l~~G~iV~G~V~~v~~~gv~Vdig~~~~G~lp~~els~~~~~~~~~~~~vGd~V~v~V~~vd~~~g~i~LS~k~ 373 (647)
T PRK00087 294 NELEKQIRRGDIVKGTVVSVNENEVFVDVGYKSEGVIPLRELTLDEISSLKESVKVGDEIEVKVLKLEDEDGYVVLSKKE 373 (647)
T ss_pred HHHHhhccCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhcccccCChhhccCCCCEEEEEEEEEECCCCcEEEEeeh
Confidence 4567789999999999999999999999998899999999999988889999999999999999999 46799999998
Q ss_pred hhhccchhhcccccc-ccCCcEEEEEEEEEecceEEEEEcCCeEEEEeCcccCCCCCCCCCCCccCCCEEEEEEEEEccC
Q 000227 568 TLVKSKLAILSSYAE-ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPA 646 (1826)
Q Consensus 568 ~Lv~~~~~~~~s~~~-~~~G~~~~G~V~~i~~~G~~V~~~~gv~G~vp~sel~~~~~~~~~~~~~vGq~V~vrVl~vd~~ 646 (1826)
..... .|..+.+ +++|+++.|+|+++.++|+||+++ +++||+|.+++++....++.. + +|+++.|+|+++|++
T Consensus 374 ~~~~~---~~~~l~~~~~~G~iv~g~V~~v~~~G~~V~lg-gi~gfiP~sel~~~~~~d~~~-~-vG~~v~v~Vl~vd~e 447 (647)
T PRK00087 374 ADREK---AWKELEEAFENGEPVKGKVKEVVKGGLLVDYG-GVRAFLPASHVELGYVEDLSE-Y-KGQELEVKIIEFNRK 447 (647)
T ss_pred hcchh---HHHHHHHHhhCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHhCccccCCHHH-h-CCCEEEEEEEEEEcC
Confidence 76543 3444333 478999999999999999999995 699999999998876666654 3 999999999999999
Q ss_pred CCE-EEEEEeeCCCC------CcccccccCCCEEEEEEEEEecCeEEEEEEecCceEEEeeCcccccccccccccccccC
Q 000227 647 SRR-INLSFMMKPTR------VSEDDLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIK 719 (1826)
Q Consensus 647 ~~r-i~lS~k~~~~~------~~~~~~~~vG~iv~g~V~~v~~~g~~V~l~~~~~v~G~i~~~hLsd~~~~~~~l~~~lk 719 (1826)
+++ +.+|++..... ....+.+++|++|.|+|++++++|++|.+ ++++|+||.++++|.... ...+.|+
T Consensus 448 ~~~~l~lS~k~~~~~~~~~~~~~~~~~l~~G~iV~g~V~~v~~~G~fV~l---~gv~Gll~~sels~~~~~--~~~~~~~ 522 (647)
T PRK00087 448 RRKKVVLSRKAILEEEKEKKKEETWNSLEEGDVVEGEVKRLTDFGAFVDI---GGVDGLLHVSEISWGRVE--KPSDVLK 522 (647)
T ss_pred CCcEEEEEeHHHhhhhhhhHHHHHHHhCCCCCEEEEEEEEEeCCcEEEEE---CCEEEEEEHHHcCccccC--CHHHhcC
Confidence 999 99999864211 11235678999999999999999999999 689999999999985432 2456799
Q ss_pred CCCEEE-EEEEeecCCCeEEEecccccccccccCCCccccCCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCccc
Q 000227 720 PGYEFD-QLLVLDNESSNLLLSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQ 798 (1826)
Q Consensus 720 ~G~~i~-~vl~id~~~~~v~ls~K~sl~~~~~~i~~~~~~~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~ 798 (1826)
+|+.++ +++.+|++++++.||+|+.+.++|..+. +++++|+.+.|.|++++++|+||++.+++.||+|.+++++.+
T Consensus 523 vGd~V~vkV~~id~~~~~I~lS~K~~~~~p~~~~~---~~~~~G~~v~g~V~~i~~~G~fV~l~~~i~Gli~~sel~~~~ 599 (647)
T PRK00087 523 VGDEIKVYILDIDKENKKLSLSLKKLLPDPWENVE---EKYPVGSIVLGKVVRIAPFGAFVELEPGVDGLVHISQISWKR 599 (647)
T ss_pred CCCEEEEEEEEEECCCCEEEEEeeccccChhhhhh---hhccCCeEEEEEEEEEECCeEEEEECCCCEEEEEhhhcCccc
Confidence 999999 8899999999999999999999987654 457899999999999999999999999999999999999999
Q ss_pred ccCcccCCCCCCEEEEEEEEeeCCCCeEEEEeccccc
Q 000227 799 RADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1826)
Q Consensus 799 ~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~~~ 835 (1826)
..++.+.|++||.|+|+|+++|++++|+.||+|....
T Consensus 600 ~~~~~~~~kvGd~V~vkV~~id~e~~rI~lslk~~~~ 636 (647)
T PRK00087 600 IDKPEDVLSEGEEVKAKILEVDPEEKRIRLSIKEVEE 636 (647)
T ss_pred cCCHhhcCCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 9999999999999999999999999999999997754
No 19
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=100.00 E-value=3.4e-32 Score=324.01 Aligned_cols=242 Identities=23% Similarity=0.382 Sum_probs=214.8
Q ss_pred ccCCCEEEEEEEEEEcCcCeEEEEECCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecccCC
Q 000227 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRG 1336 (1826)
Q Consensus 1257 l~~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~f~~G~~V~~~Vl~id~~~~g 1336 (1826)
++.|+++.|+|+++.+. |++|+||.+..|++|.+|+++++..+ |.+.|++|+.|+|+|++++.+
T Consensus 29 ~~~G~iv~G~V~~i~~~--g~~Vdig~k~~g~lp~sEis~~~~~~-----------~~~~~~~G~~v~~~Vi~~~~~--- 92 (318)
T PRK07400 29 FKPGDIVNGTVFSLEPR--GALIDIGAKTAAFMPIQEMSINRVEG-----------PEEVLQPNETREFFILSDENE--- 92 (318)
T ss_pred cCCCCEEEEEEEEEECC--EEEEEECCCeEEEEEHHHhccccccC-----------HHHccCCCCEEEEEEEEEeCC---
Confidence 56999999999999998 99999999999999999999988776 778899999999999999875
Q ss_pred ceEEEEEeeeccCCCCCCCCCCCCCCCCCCcccccccccC-CCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCc
Q 000227 1337 TFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDL-SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY 1415 (1826)
Q Consensus 1337 ~~~i~LS~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~ 1415 (1826)
++++.||+|+.. . ...|..+.++ ..|++|+|+|++++++|+||+++ |++||||++++||.+
T Consensus 93 ~~~i~lS~k~~~-----~------------~~~w~~l~~~~~~~~~V~g~V~~~~~~G~~V~l~-Gv~gfip~s~ls~~~ 154 (318)
T PRK07400 93 DGQLTLSIRRIE-----Y------------MRAWERVRQLQKEDATVRSEVFATNRGGALVRIE-GLRGFIPGSHISTRK 154 (318)
T ss_pred CCeEEEehhhhh-----h------------hhHHHHHHHhccCCCEEEEEEEEEECCeEEEEEC-CEEEEEEHHHcCccC
Confidence 579999999874 1 0135555555 46899999999999999999996 999999999999975
Q ss_pred cCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEeccccccccccccccccccCCCCEEEEEEEEEeeceEEEEEecCceEE
Q 000227 1416 VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVG 1495 (1826)
Q Consensus 1416 v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~~~~~~~~~~~~~~~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~G 1495 (1826)
.++ .+ +|+.|.++|+++|+++++|.||+|...... .+.++++|+++.|+|++|++||+||.+. ++.|
T Consensus 155 ~~~---~~-vG~~i~~kVl~id~~~~~i~lS~K~~~~~~-------~~~~~k~G~vv~G~V~~I~~~G~fV~i~--gv~G 221 (318)
T PRK07400 155 PKE---EL-VGEELPLKFLEVDEERNRLVLSHRRALVER-------KMNRLEVGEVVVGTVRGIKPYGAFIDIG--GVSG 221 (318)
T ss_pred Ccc---cc-CCCEEEEEEEEEEcccCEEEEEhhHhhhhh-------hhccCCCCCEEEEEEEEEECCeEEEEEC--CEEE
Confidence 443 34 999999999999999999999999766542 3678999999999999999999999994 7999
Q ss_pred EEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeeccccCC
Q 000227 1496 LCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKN 1545 (1826)
Q Consensus 1496 l~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s~~~~ 1545 (1826)
|||+|++++.++.++.+.|++||.|+|+|+++|.++++|.||+|....++
T Consensus 222 llhisels~~~~~~~~~~~~vGd~VkvkVl~iD~e~~rI~LS~K~l~~~P 271 (318)
T PRK07400 222 LLHISEISHEHIETPHSVFNVNDEMKVMIIDLDAERGRISLSTKQLEPEP 271 (318)
T ss_pred EEEHHHcccccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEeccccCh
Confidence 99999999999999999999999999999999999999999999965444
No 20
>PRK07400 30S ribosomal protein S1; Reviewed
Probab=99.98 E-value=3e-31 Score=315.87 Aligned_cols=237 Identities=22% Similarity=0.295 Sum_probs=213.4
Q ss_pred ccCCcEEEEEEEEEecceEEEEEcCCeEEEEeCcccCCCCCCCCCCCccCCCEEEEEEEEEccCCCEEEEEEeeCC--CC
Q 000227 583 ATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKP--TR 660 (1826)
Q Consensus 583 ~~~G~~~~G~V~~i~~~G~~V~~~~gv~G~vp~sel~~~~~~~~~~~~~vGq~V~vrVl~vd~~~~ri~lS~k~~~--~~ 660 (1826)
+++|+++.|+|+++.++||||+|+++.+||+|.+++++.++.++.+.|++||+++|+|+++|++++++.||++... .+
T Consensus 29 ~~~G~iv~G~V~~i~~~g~~Vdig~k~~g~lp~sEis~~~~~~~~~~~~~G~~v~~~Vi~~~~~~~~i~lS~k~~~~~~~ 108 (318)
T PRK07400 29 FKPGDIVNGTVFSLEPRGALIDIGAKTAAFMPIQEMSINRVEGPEEVLQPNETREFFILSDENEDGQLTLSIRRIEYMRA 108 (318)
T ss_pred cCCCCEEEEEEEEEECCEEEEEECCCeEEEEEHHHhccccccCHHHccCCCCEEEEEEEEEeCCCCeEEEehhhhhhhhH
Confidence 6899999999999999999999988899999999999988889999999999999999999999999999999752 22
Q ss_pred Cccc-ccccCCCEEEEEEEEEecCeEEEEEEecCceEEEeeCcccccccccccccccccCCCCEEE-EEEEeecCCCeEE
Q 000227 661 VSED-DLVKLGSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFD-QLLVLDNESSNLL 738 (1826)
Q Consensus 661 ~~~~-~~~~vG~iv~g~V~~v~~~g~~V~l~~~~~v~G~i~~~hLsd~~~~~~~l~~~lk~G~~i~-~vl~id~~~~~v~ 738 (1826)
|... +....|++|+|+|+.+.++|++|.+ +|++||||.+||||... .+ ..+|+.|+ +++.+|++++++.
T Consensus 109 w~~l~~~~~~~~~V~g~V~~~~~~G~~V~l---~Gv~gfip~s~ls~~~~-----~~-~~vG~~i~~kVl~id~~~~~i~ 179 (318)
T PRK07400 109 WERVRQLQKEDATVRSEVFATNRGGALVRI---EGLRGFIPGSHISTRKP-----KE-ELVGEELPLKFLEVDEERNRLV 179 (318)
T ss_pred HHHHHHhccCCCEEEEEEEEEECCeEEEEE---CCEEEEEEHHHcCccCC-----cc-ccCCCEEEEEEEEEEcccCEEE
Confidence 3332 3345699999999999999999999 58999999999998532 12 24999999 8999999999999
Q ss_pred EecccccccccccCCCccccCCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEE
Q 000227 739 LSAKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILD 818 (1826)
Q Consensus 739 ls~K~sl~~~~~~i~~~~~~~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~ 818 (1826)
||+|+.+.+. .+.++++|+++.|+|++|++||+||++ +|+.||+|.++++|.+..++.+.|++||.|+|+|++
T Consensus 180 lS~K~~~~~~------~~~~~k~G~vv~G~V~~I~~~G~fV~i-~gv~Gllhisels~~~~~~~~~~~~vGd~VkvkVl~ 252 (318)
T PRK07400 180 LSHRRALVER------KMNRLEVGEVVVGTVRGIKPYGAFIDI-GGVSGLLHISEISHEHIETPHSVFNVNDEMKVMIID 252 (318)
T ss_pred EEhhHhhhhh------hhccCCCCCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHcccccccChhhccCCCCEEEEEEEE
Confidence 9999888643 356789999999999999999999999 689999999999999999999999999999999999
Q ss_pred eeCCCCeEEEEeccccc
Q 000227 819 VNSETGRITLSLKQSCC 835 (1826)
Q Consensus 819 id~e~~rl~LSlk~~~~ 835 (1826)
+|.+++|+.||+|+...
T Consensus 253 iD~e~~rI~LS~K~l~~ 269 (318)
T PRK07400 253 LDAERGRISLSTKQLEP 269 (318)
T ss_pred EeCCCCEEEEEEecccc
Confidence 99999999999999865
No 21
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=2.7e-17 Score=191.61 Aligned_cols=139 Identities=18% Similarity=0.327 Sum_probs=129.7
Q ss_pred cCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHH
Q 000227 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~ 1745 (1826)
.+...+++.|||||..+..+-.|||+|+.|+|++..|++||++..||+.++|. -. .+|+.|+.||..+| +.+-
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-Vd----qlWyKY~ymEE~Lg--Ni~g 159 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VD----QLWYKYIYMEEMLG--NIAG 159 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HH----HHHHHHHHHHHHhc--ccHH
Confidence 34667799999999999999999999999999999999999999999988874 32 48999999999999 7799
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccccc
Q 000227 1746 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILSIF 1812 (1826)
Q Consensus 1746 ~~~vf~~a~~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~~~ 1812 (1826)
||++|+|||.+.|..+.|+.+++++.+.++++.||++|++.+--+| .++.||.||+|++++|+.++
T Consensus 160 aRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 160 ARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHHHHHHHHHHHhcCcHHH
Confidence 9999999999999999999999999999999999999999999999 69999999999999997654
No 22
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.67 E-value=2.7e-16 Score=189.06 Aligned_cols=146 Identities=22% Similarity=0.314 Sum_probs=137.9
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHH
Q 000227 1656 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1735 (1826)
Q Consensus 1656 ~~~~~~~~~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE 1735 (1826)
++.+++.|+.++.|+++..+.+++..+|||..||+...+.+..+.++++||.++.+| |.......||+.|++||
T Consensus 588 lM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llaka------r~~sgTeRv~mKs~~~e 661 (913)
T KOG0495|consen 588 LMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKA------RSISGTERVWMKSANLE 661 (913)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHH------hccCCcchhhHHHhHHH
Confidence 788999999999999999999999999999999999999999999999999999999 44444556999999999
Q ss_pred HHcCCCCHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1736 NEYGNPPEEAVVKVFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1736 ~~~G~~~~e~~~~vf~~a~-~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
..+| +.|.|..++++|+ +|++.+|+|+++.|||++.++.+.||+.|-.++|+||+|..+|++.+++..+.|+
T Consensus 662 r~ld--~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~ 734 (913)
T KOG0495|consen 662 RYLD--NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ 734 (913)
T ss_pred HHhh--hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc
Confidence 9999 7799999999999 7999999999999999999999999999999999999999999999999988764
No 23
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=99.56 E-value=7.8e-16 Score=179.60 Aligned_cols=147 Identities=17% Similarity=0.254 Sum_probs=126.6
Q ss_pred ccCC-CCCEEEEEEEEEecceEEEEeC--CCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEecc
Q 000227 1374 EDLS-PNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450 (1826)
Q Consensus 1374 ~~l~-~G~~v~G~V~~v~~~GvFV~l~--~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s 1450 (1826)
..+. +|++|.|.|++|.++|+||.|. ++++|+||+|+|||.++.++++.+++||.|.|+|++||+++++|.||+|..
T Consensus 12 ~~~P~~GdvV~g~V~~I~d~GafV~L~EY~gvEGlIhiSElS~~ri~~i~d~vkvGd~v~vkVl~VD~ekg~IdLS~K~v 91 (319)
T PTZ00248 12 QKFPEEDDLVMVKVVRITEMGAYVSLLEYDDIEGMILMSELSKRRIRSINKLIRVGRHEVVVVLRVDKEKGYIDLSKKRV 91 (319)
T ss_pred hhCCCCCCEEEEEEEEEeCCeEEEEecCCCCcEEEEEHHHhcccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEeeec
Confidence 3465 7999999999999999999996 589999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccCCCCEEEEEEEEEee-ceEEEE------EecCceEEEEEccccCcccccCccccCC---CCCEE
Q 000227 1451 DSRTASQSEINNLSNLHVGDIVIGQIKRVES-YGLFIT------IENTNLVGLCHVSELSEDHVDNIETIYR---AGEKV 1520 (1826)
Q Consensus 1451 ~~~~~~~~~~~~~~~~~~G~iv~G~V~~v~~-~GvFV~------l~~~~v~Gl~h~sels~~~~~~~~~~~~---~Gd~V 1520 (1826)
..+||... ...++.|+++.|+|+++.+ ||+|++ .-+ .+.++.|.++++...+.+....|. .++.+
T Consensus 92 ~~~pw~~~----~e~~~~g~~v~~~V~~ia~~~g~~~eely~~i~~p-l~~~~gh~y~af~~~v~~~~evl~~l~i~~ev 166 (319)
T PTZ00248 92 SPEDIEAC----EEKFSKSKKVHSIMRHIAQKHGMSVEELYTKIIWP-LYKKYGHALDALKEALTNPDNVFEGLDIPEEV 166 (319)
T ss_pred ccchHHHH----HHhCcCCCEEEEEEEEchhhcCCCHHHHHHHHHHH-HHHhcCCHHHHHHHHhcCchhhhccCCCCHHH
Confidence 99987654 5689999999999999954 999997 334 688999999988777766555555 66555
Q ss_pred EEEEE
Q 000227 1521 KVKIL 1525 (1826)
Q Consensus 1521 k~kVl 1525 (1826)
+.+++
T Consensus 167 ~~~l~ 171 (319)
T PTZ00248 167 KESLL 171 (319)
T ss_pred HHHHH
Confidence 44433
No 24
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=4.9e-15 Score=145.17 Aligned_cols=75 Identities=35% Similarity=0.696 Sum_probs=71.7
Q ss_pred ccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeecc
Q 000227 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1826)
Q Consensus 1465 ~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s 1541 (1826)
.+++|+++.|+|++|++||+||+|++ +-+||+||||+++.+++|+.+.+++||.|+|+|+++| ++++|+||||..
T Consensus 2 ~~kvG~~l~GkItgI~~yGAFV~l~~-g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~id-e~GKisLSIr~~ 76 (129)
T COG1098 2 SMKVGSKLKGKITGITPYGAFVELEG-GKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDID-ENGKISLSIRKL 76 (129)
T ss_pred CccccceEEEEEEeeEecceEEEecC-CCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEeec-cCCCcceehHHh
Confidence 47899999999999999999999986 7899999999999999999999999999999999999 499999999984
No 25
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=3.5e-13 Score=157.72 Aligned_cols=139 Identities=21% Similarity=0.356 Sum_probs=122.3
Q ss_pred ccCCCCCHHHHHHHHHhCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc--------------------ch
Q 000227 1665 EKDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINI--------------------RE 1720 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~s----s~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~--------------------re 1720 (1826)
..+.-.+++.|.++|..-|.. +.+||+|+.|++++.++..||+|+.+|+..+|- |.
T Consensus 379 ~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred hhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 345777899999999999985 669999999999999999999999999887753 22
Q ss_pred h--------hhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000227 1721 E--------NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC---DPKKVHLALLGLYERTEQNKLADELLYKMIKK 1789 (1826)
Q Consensus 1721 ~--------~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~---~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk 1789 (1826)
. .|.+..|+.|..||..+| +.|++|.+|+-|++.| -|.-+|..|+.++..+|.+++||.||++.+..
T Consensus 459 LYEkfle~~Pe~c~~W~kyaElE~~Lg--dtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 459 LYEKFLEFSPENCYAWSKYAELETSLG--DTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHhcChHhhHHHHHHHHHHHHhh--hHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 2 233468999999999999 9999999999999777 37888999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHh
Q 000227 1790 FKHSCKVIIELLSFHFT 1806 (1826)
Q Consensus 1790 ~~~~~~~w~~~~~~~~~ 1806 (1826)
.++ ++|||++|+|+..
T Consensus 537 t~h-~kvWisFA~fe~s 552 (677)
T KOG1915|consen 537 TQH-VKVWISFAKFEAS 552 (677)
T ss_pred ccc-chHHHhHHHHhcc
Confidence 997 5599999999873
No 26
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=99.44 E-value=9.6e-12 Score=138.35 Aligned_cols=213 Identities=19% Similarity=0.149 Sum_probs=167.3
Q ss_pred ccCCCEEEEEEEEEEcCcCeEEEEECCce-EEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecccC
Q 000227 1257 IHEGDIVGGRISKILSGVGGLVVQIGPHL-YGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVR 1335 (1826)
Q Consensus 1257 l~~G~iv~g~V~~v~~~~~g~~V~l~~~~-~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~f~~G~~V~~~Vl~id~~~~ 1335 (1826)
+.+|++....|.+.... |+|++-+.+- .-++|.++..+ ....+|+.|.+.|.- |.
T Consensus 3 ~~iG~~~~l~V~~~~~~--g~fL~~~~~~~~ilL~k~~~~~------------------~e~evGdev~vFiY~-D~--- 58 (287)
T COG2996 3 IKIGQINSLEVVEFSDF--GYFLDAGEDGTTILLPKSEPEE------------------DELEVGDEVTVFIYV-DS--- 58 (287)
T ss_pred ccccceEEEEEEEeece--eEEEecCCCceEEeccccCCcC------------------CccccCcEEEEEEEE-CC---
Confidence 34899999999999999 9999987543 45566554421 224599999999886 54
Q ss_pred CceEEEEEeeeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCEEEEEEEEEe-cceEEEEeCCCeEEEEEccccCCC
Q 000227 1336 GTFHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFIMLSRKLDAKVLLSNLSDG 1414 (1826)
Q Consensus 1336 g~~~i~LS~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~-~~GvFV~l~~~v~g~v~iselsd~ 1414 (1826)
..++.++++... ..+|+.-.+.|+.++ +-|+||+.|-.-+.+|+++++...
T Consensus 59 -~~rl~aTt~~p~---------------------------~tvg~~g~~~Vv~v~~~lGaFlD~Gl~KDl~vp~~elp~~ 110 (287)
T COG2996 59 -EDRLIATTREPK---------------------------ATVGEYGWLKVVEVNKDLGAFLDWGLPKDLLVPLDELPTL 110 (287)
T ss_pred -CCceeheeecce---------------------------EeecceeEEEEEEEcCCcceEEecCCCcceeeehhhcccc
Confidence 357777776654 468888999999998 789999999999999999998854
Q ss_pred ccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEeccccccccccccccccccC---CCCEEEEEEEEEeeceEEEEEecC
Q 000227 1415 YVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLH---VGDIVIGQIKRVESYGLFITIENT 1491 (1826)
Q Consensus 1415 ~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~~~~~~~~~~~~~~~~~---~G~iv~G~V~~v~~~GvFV~l~~~ 1491 (1826)
.--+| ++|+.+-+. +.+|+ ++||..+++.-..-. . ...... .+|.+.|+|.+...-|.||-+++
T Consensus 111 ~~~wp----q~Gd~l~v~-l~~Dk-k~Ri~g~~a~~~~l~--~----l~~~~~~~l~nq~v~~tVYr~~~~G~fv~~e~- 177 (287)
T COG2996 111 KSLWP----QKGDKLLVY-LYVDK-KGRIWGTLAIEKILE--N----LATPAYNNLKNQEVDATVYRLLESGTFVITEN- 177 (287)
T ss_pred cccCC----CCCCEEEEE-EEEcc-CCcEEEEecchhHHH--h----cCCccchhhhcCeeeeEEEEEeccceEEEEcC-
Confidence 22234 499999998 57885 559998886644210 0 111222 59999999999999999999976
Q ss_pred ceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeecccc
Q 000227 1492 NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1826)
Q Consensus 1492 ~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s~~ 1543 (1826)
+.-|++|.||... .++.|++++++|+.+. ++++|.||+++.-+
T Consensus 178 ~~~GfIh~sEr~~--------~prlG~~l~~rVi~~r-eDg~lnLSl~p~~~ 220 (287)
T COG2996 178 GYLGFIHKSERFA--------EPRLGERLTARVIGVR-EDGKLNLSLRPRAH 220 (287)
T ss_pred CeEEEEcchhhcc--------cccCCceEEEEEEEEc-cCCeeecccccccH
Confidence 8999999999653 4689999999999999 59999999999755
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.42 E-value=1.2e-12 Score=158.30 Aligned_cols=133 Identities=22% Similarity=0.257 Sum_probs=126.0
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 000227 1672 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1751 (1826)
Q Consensus 1672 ~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~ 1751 (1826)
-+-|++++..+|.+..+||+|++-.|..|++-.||.|+.+|+...+..|+ ||+|.++||...- ..|+||.+|.
T Consensus 570 ~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee-----iwlaavKle~en~--e~eraR~lla 642 (913)
T KOG0495|consen 570 EALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE-----IWLAAVKLEFEND--ELERARDLLA 642 (913)
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH-----HHHHHHHHhhccc--cHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999988776 9999999999999 6799999999
Q ss_pred HHHhcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccc
Q 000227 1752 RALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILSI 1811 (1826)
Q Consensus 1752 ~a~~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~~ 1811 (1826)
+|....+...||++++.++...++.++|+.+++++++.||...++|+..++.+.++++-+
T Consensus 643 kar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 643 KARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988776544
No 28
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.41 E-value=5.6e-13 Score=125.21 Aligned_cols=71 Identities=35% Similarity=0.632 Sum_probs=66.9
Q ss_pred CCCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCC---CccCCCCcEEEEEEEEEeCCCCeEEEE
Q 000227 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP---EKEFPIGKLVAGRVLSVEPLSKRVEVT 1446 (1826)
Q Consensus 1376 l~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~---~~~f~vGq~V~~kVl~vd~e~~rI~lS 1446 (1826)
+++|++|.|+|++++++|+||+|+++++|+||++++||.++.+| .+.|++||.|+|+|+++|+++++|.||
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~~v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~kVl~id~~~~~i~LS 74 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSSSIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVNSEKNLVELS 74 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCCCCEEEEEHHHccCccccChhhHhcccCCCCEEEEEEEEEECCCCEEecC
Confidence 57999999999999999999999999999999999999997764 589999999999999999999999886
No 29
>COG1098 VacB Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=2.5e-13 Score=133.28 Aligned_cols=77 Identities=30% Similarity=0.486 Sum_probs=73.5
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEeccccc
Q 000227 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1826)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~~~ 835 (1826)
.+++|++++|.|+.|++||+||+|++|=+||+|+|++.+.|+.++.+++++||.|.|+|+++|. ++++.||+|....
T Consensus 2 ~~kvG~~l~GkItgI~~yGAFV~l~~g~tGLVHISEIa~~fVkdI~d~L~vG~eV~vKVl~ide-~GKisLSIr~~~e 78 (129)
T COG1098 2 SMKVGSKLKGKITGITPYGAFVELEGGKTGLVHISEIADGFVKDIHDHLKVGQEVKVKVLDIDE-NGKISLSIRKLEE 78 (129)
T ss_pred CccccceEEEEEEeeEecceEEEecCCCcceEEehHhhhhhHHhHHHHhcCCCEEEEEEEeecc-CCCcceehHHhhh
Confidence 3678999999999999999999999999999999999999999999999999999999999997 9999999998753
No 30
>cd05705 S1_Rrp5_repeat_hs14 S1_Rrp5_repeat_hs14: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 14 (hs14). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.38 E-value=1.2e-12 Score=123.11 Aligned_cols=71 Identities=21% Similarity=0.445 Sum_probs=66.3
Q ss_pred cCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccC---ccccCCCCCEEEEEEEEEeCCCCeEEEe
Q 000227 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN---IETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1826)
Q Consensus 1466 ~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~---~~~~~~~Gd~Vk~kVl~id~e~~rI~Ls 1537 (1826)
+++|++|.|+|+++++||+||.|.+ ++.|++|+++++|.++.+ +.+.|++||.|+|+|+++|++++||.||
T Consensus 1 ~k~G~~V~g~V~~i~~~G~fV~l~~-~v~G~v~~~~ls~~~~~~~~~~~~~~~~G~~v~~kVl~id~~~~~i~LS 74 (74)
T cd05705 1 IKEGQLLRGYVSSVTKQGVFFRLSS-SIVGRVLFQNVTKYFVSDPSLYNKYLPEGKLLTAKVLSVNSEKNLVELS 74 (74)
T ss_pred CCCCCEEEEEEEEEeCCcEEEEeCC-CCEEEEEHHHccCccccChhhHhcccCCCCEEEEEEEEEECCCCEEecC
Confidence 5789999999999999999999986 899999999999998766 4589999999999999999999999886
No 31
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=99.37 E-value=1.3e-12 Score=152.95 Aligned_cols=109 Identities=22% Similarity=0.260 Sum_probs=98.9
Q ss_pred cCC-CCCEEEEEEEEEeeceEEEEEC--CCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEecccc
Q 000227 758 HIH-PNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834 (1826)
Q Consensus 758 ~~~-~G~~~~G~V~~i~~~GvfV~f~--~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~~ 834 (1826)
.++ +|+++.|.|++|++||+||.+. +|+.||+|.|+++|.++.+|.+.+++||.|.|+|+++|+++++|.||+|...
T Consensus 13 ~~P~~GdvV~g~V~~I~d~GafV~L~EY~gvEGlIhiSElS~~ri~~i~d~vkvGd~v~vkVl~VD~ekg~IdLS~K~v~ 92 (319)
T PTZ00248 13 KFPEEDDLVMVKVVRITEMGAYVSLLEYDDIEGMILMSELSKRRIRSINKLIRVGRHEVVVVLRVDKEKGYIDLSKKRVS 92 (319)
T ss_pred hCCCCCCEEEEEEEEEeCCeEEEEecCCCCcEEEEEHHHhcccccCCHHHhcCCCCEEEEEEEEEeCCCCEEEEEeeecc
Confidence 455 7999999999999999999996 7999999999999999999999999999999999999999999999999876
Q ss_pred cCCCcchhhHHHHHHHHHHHHhhcccCCCcccccccccCCCcEEEEEEEEEec-CceEEE
Q 000227 835 CSSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESND-FGVVVS 893 (1826)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vG~~V~g~V~~i~~-~Gv~v~ 893 (1826)
. .+|......|+.|+.|+++|..+.+ +|+.+.
T Consensus 93 ~---------------------------~pw~~~~e~~~~g~~v~~~V~~ia~~~g~~~e 125 (319)
T PTZ00248 93 P---------------------------EDIEACEEKFSKSKKVHSIMRHIAQKHGMSVE 125 (319)
T ss_pred c---------------------------chHHHHHHhCcCCCEEEEEEEEchhhcCCCHH
Confidence 4 3466667889999999999999965 898764
No 32
>COG2996 Predicted RNA-bindining protein (contains S1 and HTH domains) [General function prediction only]
Probab=99.37 E-value=7.3e-11 Score=131.46 Aligned_cols=231 Identities=17% Similarity=0.150 Sum_probs=175.1
Q ss_pred ccCCcEEEEEEEEEecceEEEEEcCC-eEEEEeCcccCCCCCCCCCCCccCCCEEEEEEEEEccCCCEEEEEEeeCCCCC
Q 000227 583 ATDRLITHGWITKIEKHGCFVRFYNG-VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRV 661 (1826)
Q Consensus 583 ~~~G~~~~G~V~~i~~~G~~V~~~~g-v~G~vp~sel~~~~~~~~~~~~~vGq~V~vrVl~vd~~~~ri~lS~k~~~~~~ 661 (1826)
..+|++....|....++|+|+.=.++ -.-++|+++... +...+|+.|++-|. .|. ++|+.++.+.
T Consensus 3 ~~iG~~~~l~V~~~~~~g~fL~~~~~~~~ilL~k~~~~~-------~e~evGdev~vFiY-~D~-~~rl~aTt~~----- 68 (287)
T COG2996 3 IKIGQINSLEVVEFSDFGYFLDAGEDGTTILLPKSEPEE-------DELEVGDEVTVFIY-VDS-EDRLIATTRE----- 68 (287)
T ss_pred ccccceEEEEEEEeeceeEEEecCCCceEEeccccCCcC-------CccccCcEEEEEEE-ECC-CCceeheeec-----
Confidence 35899999999999999999975332 267888887632 24679999999886 564 5677777754
Q ss_pred cccccccCCCEEEEEEEEEe-cCeEEEEEEecCceEEEeeCcccccccccccccccccCCCCEEEEEEEeecCCCeEEEe
Q 000227 662 SEDDLVKLGSLVSGVVDVVT-PNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLS 740 (1826)
Q Consensus 662 ~~~~~~~vG~iv~g~V~~v~-~~g~~V~l~~~~~v~G~i~~~hLsd~~~~~~~l~~~lk~G~~i~~vl~id~~~~~v~ls 740 (1826)
..+++|+.-.++|+++. ..|+||.. +=.-+-+||..++..... -..++||++-.-|.+|+.+ |+.-+
T Consensus 69 ---p~~tvg~~g~~~Vv~v~~~lGaFlD~--Gl~KDl~vp~~elp~~~~------~wpq~Gd~l~v~l~~Dkk~-Ri~g~ 136 (287)
T COG2996 69 ---PKATVGEYGWLKVVEVNKDLGAFLDW--GLPKDLLVPLDELPTLKS------LWPQKGDKLLVYLYVDKKG-RIWGT 136 (287)
T ss_pred ---ceEeecceeEEEEEEEcCCcceEEec--CCCcceeeehhhcccccc------cCCCCCCEEEEEEEEccCC-cEEEE
Confidence 56788999999999999 78999987 324678899888864221 1368999999777888877 44444
Q ss_pred cccccccccccCCCccccCCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEee
Q 000227 741 AKYSLINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVN 820 (1826)
Q Consensus 741 ~K~sl~~~~~~i~~~~~~~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id 820 (1826)
++ .-+..++++....+--.|+.++|+|.++...|.||-..++.-||+|+|+.-. ....||.++++|+.+.
T Consensus 137 ~a--~~~~l~~l~~~~~~~l~nq~v~~tVYr~~~~G~fv~~e~~~~GfIh~sEr~~--------~prlG~~l~~rVi~~r 206 (287)
T COG2996 137 LA--IEKILENLATPAYNNLKNQEVDATVYRLLESGTFVITENGYLGFIHKSERFA--------EPRLGERLTARVIGVR 206 (287)
T ss_pred ec--chhHHHhcCCccchhhhcCeeeeEEEEEeccceEEEEcCCeEEEEcchhhcc--------cccCCceEEEEEEEEc
Confidence 33 2222333333322212399999999999999999999999999999998753 3689999999999998
Q ss_pred CCCCeEEEEecccccC--CCcchhhHHHHHHH
Q 000227 821 SETGRITLSLKQSCCS--STDASFMQEHFLLE 850 (1826)
Q Consensus 821 ~e~~rl~LSlk~~~~~--~~~~~~~~~~~~~~ 850 (1826)
+ +++|.||+++.... ..|+..|..||...
T Consensus 207 e-Dg~lnLSl~p~~~E~l~~daq~Il~yL~~~ 237 (287)
T COG2996 207 E-DGKLNLSLRPRAHEMLDEDAQMILTYLESN 237 (287)
T ss_pred c-CCeeecccccccHHhhhhhHHHHHHHHHHc
Confidence 7 99999999987532 26777788887754
No 33
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.37 E-value=2.1e-12 Score=121.18 Aligned_cols=71 Identities=48% Similarity=0.793 Sum_probs=65.5
Q ss_pred cccCCcEEEEEEEEEeeceEEEEeCCCCeEEEeeCCCCCcCCCCCCCCCcEEEEEEEEEcCCCCEEEEecCcc
Q 000227 229 TVQEGMVLTAYVKSIEDHGYILHFGLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRTRKVVYLSSDPD 301 (1826)
Q Consensus 229 ~l~~G~~l~~~V~svEDhG~ild~Gi~~~~gFl~~~~~~~~~~~~l~~G~~~~~~V~~~~~~~~~v~ls~~~~ 301 (1826)
||.+|++++|+|+|||||||+|+||+.+++||||+++++... .+++||.+.|.|++++..++.+.||+.+.
T Consensus 1 dl~~G~~v~g~V~si~d~G~~v~~g~~gv~Gfl~~~~~~~~~--~~~~Gq~v~~~V~~vd~~~~~v~ls~k~~ 71 (74)
T cd05694 1 DLVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNFS--KLKVGQLLLCVVEKVKDDGRVVSLSADPS 71 (74)
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEeCCCCcEEEEEHHHCCccc--ccCCCCEEEEEEEEEECCCCEEEEEEeec
Confidence 688999999999999999999999999999999999986443 79999999999999999999999999654
No 34
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.36 E-value=1.5e-12 Score=129.36 Aligned_cols=90 Identities=39% Similarity=0.549 Sum_probs=74.4
Q ss_pred cCcCcEEEEEEEEEecccEEEEcCCCcEEEEeccccCchhhhcc----------cccccCCCCCccccCCCEEEEEEEEE
Q 000227 131 ISAGMKLWGVVAEVNEKDLVICLPGGLRGLARAADALDPILDNE----------IEANEDNLLPTIFHVGQLVSCIVLQL 200 (1826)
Q Consensus 131 l~~G~~vlG~V~~i~~~~l~vsLp~~l~G~v~~t~is~~~~~~~----------~~~~~~~~L~~~f~vGq~v~~~V~~~ 200 (1826)
|++||.|+|+|.+|++.++.|+||+++.|+|+++++|+.|.... ..+.+...+.++|++||.|+|+|+++
T Consensus 1 L~~G~vV~G~V~~v~~~gl~v~L~~g~~G~v~~seis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V~~kVi~~ 80 (100)
T cd05693 1 LSEGMLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCKVVSL 80 (100)
T ss_pred CCCCCEEEEEEEEEcCCCEEEECCCCcEEEEEHHHhhHHHHHHHHHhhhhccccccccccCCHHHhccCCCEEEEEEEEc
Confidence 67999999999999999999999999999999999998752110 01122346889999999999999999
Q ss_pred ecCccccceeEEEEecchhhhc
Q 000227 201 DDDKKEIGKRKIWLSLRLSLLY 222 (1826)
Q Consensus 201 ~~~~~~~~~~~i~LSl~p~~vn 222 (1826)
++.++ + +++|.|||+|+.||
T Consensus 81 d~~~~-~-~~~i~LSlr~~~vn 100 (100)
T cd05693 81 DKSKS-G-KKRIELSLEPELVN 100 (100)
T ss_pred cCCcC-C-CcEEEEEecHHHCC
Confidence 86532 1 56999999999998
No 35
>cd05694 S1_Rrp5_repeat_hs2_sc2 S1_Rrp5_repeat_hs2_sc2: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 2 (hs2) and S. cerevisiae S1 repeat 2 (sc2). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.33 E-value=5.1e-12 Score=118.59 Aligned_cols=71 Identities=23% Similarity=0.287 Sum_probs=66.1
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEEC-CCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEecccc
Q 000227 758 HIHPNSVVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834 (1826)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~GvfV~f~-~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~~ 834 (1826)
+++.|++++|+|++|+++|+||+|. +|++||+|++++++. +.|++||.+.|+|+++|++++++.||+|+..
T Consensus 1 dl~~G~~v~g~V~si~d~G~~v~~g~~gv~Gfl~~~~~~~~------~~~~~Gq~v~~~V~~vd~~~~~v~ls~k~~~ 72 (74)
T cd05694 1 DLVEGMVLSGCVSSVEDHGYILDIGIPGTTGFLPKKDAGNF------SKLKVGQLLLCVVEKVKDDGRVVSLSADPSK 72 (74)
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEeCCCCcEEEEEHHHCCcc------cccCCCCEEEEEEEEEECCCCEEEEEEeecc
Confidence 4788999999999999999999995 699999999999875 6799999999999999999999999999764
No 36
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.32 E-value=5.4e-12 Score=118.41 Aligned_cols=70 Identities=27% Similarity=0.464 Sum_probs=66.5
Q ss_pred CCEEEEEEEEEeeceEEEEEecCceEEEEEccccCccc--ccCccccCCCCCEEEEEEEEEeCCCCeEEEeee
Q 000227 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH--VDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1826)
Q Consensus 1469 G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~--~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK 1539 (1826)
|++|.|+|+++.++|+||.|.+ ++.|+||+++++++. .+++.+.|++||.|+|+|+++|++++||.||+|
T Consensus 1 G~~V~g~V~~i~~~g~~V~l~~-~i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls~k 72 (73)
T cd05703 1 GQEVTGFVNNVSKEFVWLTISP-DVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHKLLRLSAR 72 (73)
T ss_pred CCEEEEEEEEEeCCEEEEEeCC-CcEEEEEHHHcCCccccccCHHHhCCCCCEEEEEEEEEeCCCCEEEEEec
Confidence 7999999999999999999987 799999999999874 788999999999999999999999999999986
No 37
>cd05703 S1_Rrp5_repeat_hs12_sc9 S1_Rrp5_repeat_hs12_sc9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 12 (hs12) and S. cerevisiae S1 repeat 9 (sc9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.32 E-value=5e-12 Score=118.61 Aligned_cols=70 Identities=30% Similarity=0.565 Sum_probs=67.2
Q ss_pred CCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCc--cCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEe
Q 000227 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1826)
Q Consensus 1379 G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~--v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk 1448 (1826)
|++|.|+|++++++|+||+|+++++|+||+++++|.. .++|.+.|++||.|+|+|+++|++++||.||+|
T Consensus 1 G~~V~g~V~~i~~~g~~V~l~~~i~G~i~~~~ls~~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~Ls~k 72 (73)
T cd05703 1 GQEVTGFVNNVSKEFVWLTISPDVKGRIPLLDLSDDVSVLEHPEKKFPIGQALKAKVVGVDKEHKLLRLSAR 72 (73)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCcEEEEEHHHcCCccccccCHHHhCCCCCEEEEEEEEEeCCCCEEEEEec
Confidence 7899999999999999999999999999999999864 889999999999999999999999999999986
No 38
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.27 E-value=1.1e-11 Score=119.86 Aligned_cols=79 Identities=47% Similarity=0.685 Sum_probs=75.5
Q ss_pred CCCccccCCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEe
Q 000227 752 LPSDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1826)
Q Consensus 752 i~~~~~~~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSl 830 (1826)
++..++++++|+++.|.|++++++|+||++.+++.||+|.+++++.+..++.+.|++||.|+|+|+++|.+++++.|||
T Consensus 5 l~~~~~~~~~G~i~~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV~~id~~~~~i~lsl 83 (83)
T cd04461 5 LPTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKVTSVDEEKQRFLLSL 83 (83)
T ss_pred chhhHHhCCCCCEEEEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEEEEEcCCCCEEEEeC
Confidence 5667888999999999999999999999999999999999999999999999999999999999999999999999986
No 39
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.26 E-value=1.7e-11 Score=145.90 Aligned_cols=116 Identities=24% Similarity=0.379 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hcCCcHHHHHH
Q 000227 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL-QYCDPKKVHLA 1765 (1826)
Q Consensus 1687 ~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~-~~~~~~kv~~~ 1765 (1826)
.+||+||.|..+.+.++.||.|++||++.-. -.+.||++|+.||...++ +.+.|++||++++ .|+....+|+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-----~~~~vy~~~A~~E~~~~~-d~~~A~~Ife~glk~f~~~~~~~~~ 75 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-----CTYHVYVAYALMEYYCNK-DPKRARKIFERGLKKFPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----S-THHHHHHHHHHHHTCS--HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 4555555555555555555555555542111 122355555555555321 3444555555555 45555555555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHhcc
Q 000227 1766 LLGLYERTEQNKLADELLYKMIKKFKH---SCKVIIELLSFHFTSI 1808 (1826)
Q Consensus 1766 ~~~i~~~~~~~~~a~~~~~~~~kk~~~---~~~~w~~~~~~~~~~~ 1808 (1826)
|+.++...++.++||.+|++++...+. +..+|-.|++|+.+.|
T Consensus 76 Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 76 YLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence 555555555555555555555555532 2245555555555554
No 40
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=99.24 E-value=2.7e-11 Score=113.89 Aligned_cols=71 Identities=30% Similarity=0.497 Sum_probs=65.4
Q ss_pred CCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEee
Q 000227 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1826)
Q Consensus 1467 ~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~Lsl 1538 (1826)
..|+++.|+|+++.+||+||+|.+...+||||+|++++.++.++.+.|++||.|+++|+++|.++ ||+||+
T Consensus 2 ~~g~~~~g~V~~i~~fG~fv~l~~~~~eGlvh~sel~~~~~~~~~~~~~~Gd~v~vkv~~vd~~~-ki~ls~ 72 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGREMKD-KMKLSL 72 (73)
T ss_pred cCCCEEEEEEEEEEeeeEEEEECCCCeEEEEEchhhCCCcccCHhhEECCCCEEEEEEEEECCCC-cEEEEe
Confidence 57999999999999999999995434799999999999999999999999999999999999876 999986
No 41
>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.24 E-value=2.1e-11 Score=114.19 Aligned_cols=71 Identities=23% Similarity=0.399 Sum_probs=66.2
Q ss_pred cCCCCEEEEEEEEEee-ceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeee
Q 000227 1466 LHVGDIVIGQIKRVES-YGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1826)
Q Consensus 1466 ~~~G~iv~G~V~~v~~-~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK 1539 (1826)
+++|++|.|+|+++.+ ||+||+|.+ +.+|++|+|+++++++.++.+.|++||.|+|+|+++|. +||.||+|
T Consensus 1 l~~G~iv~G~V~~i~~~~g~~v~l~~-~~~Glvhis~~s~~~~~~~~~~~~~Gd~v~~kV~~~~~--~~i~LSl~ 72 (72)
T cd05704 1 LEEGAVTLGMVTKVIPHSGLTVQLPF-GKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCILSKKD--GKYQLSLR 72 (72)
T ss_pred CCCCCEEEEEEEEeeCCcEEEEECCC-CCEEEEEHHHhcCcccCCHHHhCCCCCEEEEEEEEecC--CEEEEEeC
Confidence 4689999999999986 899999976 89999999999999999998999999999999999984 99999986
No 42
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.23 E-value=2.6e-11 Score=113.16 Aligned_cols=70 Identities=30% Similarity=0.558 Sum_probs=67.4
Q ss_pred CCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEec
Q 000227 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1826)
Q Consensus 762 G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk 831 (1826)
|+++.|+|++++++|+||+|++++.||+|.+++++++..++.+.|++||.++|+|+++|++++++.||+|
T Consensus 1 g~~~~g~V~~v~~~G~~V~l~~~~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~v~~~d~~~~~i~ls~k 70 (70)
T cd05698 1 GLKTHGTIVKVKPNGCIVSFYNNVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQRLLLSCK 70 (70)
T ss_pred CCEEEEEEEEEecCcEEEEECCCCEEEEEHHHcChhhcCCHHHcccCCCEEEEEEEEEcCCCCEEEEEeC
Confidence 7899999999999999999999999999999999888889999999999999999999999999999985
No 43
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.23 E-value=4.2e-11 Score=113.89 Aligned_cols=77 Identities=52% Similarity=0.993 Sum_probs=72.1
Q ss_pred CCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeecccc
Q 000227 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYF 1543 (1826)
Q Consensus 1467 ~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s~~ 1543 (1826)
++|++|.|+|+++.++|+||+|.+.++.|++|++++++++..++.+.|++||.|+|+|+++|.+++++.|++|+++|
T Consensus 1 ~~g~~v~g~V~~i~~~g~~v~l~~~~~~g~i~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls~k~~~~ 77 (77)
T cd05708 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLKIDAEKKRISLGLKASYF 77 (77)
T ss_pred CCCCEEEEEEEEEEcceEEEEECCCCeEEEEEHHHCCCCccCCHhHeecCCCEEEEEEEEEeCCCCEEEEEEEeecC
Confidence 46999999999999999999997557999999999999988888899999999999999999999999999999875
No 44
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.21 E-value=7e-11 Score=111.22 Aligned_cols=73 Identities=25% Similarity=0.406 Sum_probs=69.9
Q ss_pred CCCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEe
Q 000227 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1826)
Q Consensus 1376 l~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk 1448 (1826)
+++|+++.|.|++++++|+||+|+.+++|++|+++++|+|..++.+.|++||.|+++|+++|++++++.||+|
T Consensus 1 ~~~G~iv~g~V~~v~~~gi~v~l~~~~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~~d~~~~~i~ls~~ 73 (73)
T cd05706 1 LKVGDILPGRVTKVNDRYVLVQLGNKVTGPSFITDALDDYSEALPYKFKKNDIVRACVLSVDVPNKKIALSLR 73 (73)
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCcEEEEEhhhccCccccccccccCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 4789999999999999999999999999999999999999888899999999999999999999999999985
No 45
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=99.21 E-value=5.9e-11 Score=112.01 Aligned_cols=73 Identities=37% Similarity=0.625 Sum_probs=70.7
Q ss_pred CCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEec
Q 000227 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1826)
Q Consensus 759 ~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk 831 (1826)
+++|+++.|+|.+++++|+||++.+++.||+|.+++++.+..++...|++||+|+|+|+++|++++++.||+|
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~v~~vd~~~~~i~lS~k 74 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLGNGIEGFIPISELSDDRIDDPSEVYKIGQTVRVKVIKVDKEKGRIRLSLK 74 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEESTSSEEEEEGGGSSSSEESSSHGTCETTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcEEEEEEeehhcCccccccccccCCCCEEEEEEEEEECCCCeEEEEEC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999986
No 46
>cd05706 S1_Rrp5_repeat_sc10 S1_Rrp5_repeat_sc10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 10 (sc10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.20 E-value=7e-11 Score=111.20 Aligned_cols=73 Identities=22% Similarity=0.504 Sum_probs=68.8
Q ss_pred cCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeee
Q 000227 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1826)
Q Consensus 1466 ~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK 1539 (1826)
+++|++|.|+|+++.++|+||+|++ +++|++|++++++++..++.+.|++||.|+|+|+++|.++++|.||+|
T Consensus 1 ~~~G~iv~g~V~~v~~~gi~v~l~~-~~~g~v~~s~l~~~~~~~~~~~~~~Gd~v~~~V~~~d~~~~~i~ls~~ 73 (73)
T cd05706 1 LKVGDILPGRVTKVNDRYVLVQLGN-KVTGPSFITDALDDYSEALPYKFKKNDIVRACVLSVDVPNKKIALSLR 73 (73)
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCC-CcEEEEEhhhccCccccccccccCCCCEEEEEEEEEeCCCCEEEEEEC
Confidence 4689999999999999999999987 799999999999998878889999999999999999999999999985
No 47
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.20 E-value=5.1e-11 Score=111.31 Aligned_cols=69 Identities=25% Similarity=0.468 Sum_probs=65.4
Q ss_pred CCEEE-EEEEEE-eeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEee
Q 000227 1469 GDIVI-GQIKRV-ESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1826)
Q Consensus 1469 G~iv~-G~V~~v-~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~Lsl 1538 (1826)
|++|. |+|+++ .+||+||+|.+ ++.||+|+|+++++++++..+.|++||.++|+|+++|+++++|.||+
T Consensus 1 G~v~~~g~V~~v~~~~G~~V~l~~-gv~G~i~~s~l~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~lS~ 71 (71)
T cd05696 1 GAVVDSVKVTKVEPDLGAVFELKD-GLLGFVHISHLSDDKVPSDTGPFKAGTTHKARIIGYSPMDGLLQLSL 71 (71)
T ss_pred CcEeeeeEEEEEccCceEEEEeCC-CCEEEEEHHHCCcchhcCcccccCCCCEEEEEEEEEeCCCCEEEEeC
Confidence 78999 999999 69999999987 79999999999999998889999999999999999999999999986
No 48
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.20 E-value=4.6e-11 Score=115.40 Aligned_cols=78 Identities=33% Similarity=0.535 Sum_probs=74.1
Q ss_pred ccccccCCCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEE
Q 000227 1370 LEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447 (1826)
Q Consensus 1370 ~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSl 1447 (1826)
+..+.++++|+++.|+|+++.++|+||+++++++|++|++++++.+..++.+.|++||.|+++|+++|++++++.|||
T Consensus 6 ~~~~~~~~~G~i~~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~~~Gd~v~vkV~~id~~~~~i~lsl 83 (83)
T cd04461 6 PTNFSDLKPGMVVHGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGFKKGQSVTAKVTSVDEEKQRFLLSL 83 (83)
T ss_pred hhhHHhCCCCCEEEEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhcCCCCEEEEEEEEEcCCCCEEEEeC
Confidence 455778999999999999999999999999999999999999999999999999999999999999999999999986
No 49
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=99.20 E-value=6.9e-11 Score=111.54 Aligned_cols=73 Identities=30% Similarity=0.517 Sum_probs=71.1
Q ss_pred CCCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEe
Q 000227 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1826)
Q Consensus 1376 l~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk 1448 (1826)
+++|+++.|+|.+++++|+||+|+.+++|+||++++++.+..++...|++||.|+++|+++|++++++.||+|
T Consensus 2 ~~~G~iv~g~V~~v~~~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~~~G~~v~v~v~~vd~~~~~i~lS~k 74 (74)
T PF00575_consen 2 LKEGDIVEGKVTSVEDFGVFVDLGNGIEGFIPISELSDDRIDDPSEVYKIGQTVRVKVIKVDKEKGRIRLSLK 74 (74)
T ss_dssp SSTTSEEEEEEEEEETTEEEEEESTSSEEEEEGGGSSSSEESSSHGTCETTCEEEEEEEEEETTTTEEEEEST
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCcEEEEEEeehhcCccccccccccCCCCEEEEEEEEEECCCCeEEEEEC
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999986
No 50
>cd05698 S1_Rrp5_repeat_hs6_sc5 S1_Rrp5_repeat_hs6_sc5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 6 (hs6) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.19 E-value=5.7e-11 Score=110.86 Aligned_cols=70 Identities=37% Similarity=0.543 Sum_probs=66.9
Q ss_pred CCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeee
Q 000227 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1826)
Q Consensus 1469 G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK 1539 (1826)
|+++.|+|+++.+||+||+|.+ ++.||+|+|+++++++.++.+.|++||.++++|+++|++++++.||+|
T Consensus 1 g~~~~g~V~~v~~~G~~V~l~~-~~~gli~~s~l~~~~~~~~~~~~~~G~~i~v~v~~~d~~~~~i~ls~k 70 (70)
T cd05698 1 GLKTHGTIVKVKPNGCIVSFYN-NVKGFLPKSELSEAFIKDPEEHFRVGQVVKVKVLSCDPEQQRLLLSCK 70 (70)
T ss_pred CCEEEEEEEEEecCcEEEEECC-CCEEEEEHHHcChhhcCCHHHcccCCCEEEEEEEEEcCCCCEEEEEeC
Confidence 7899999999999999999986 799999999999998888999999999999999999999999999986
No 51
>cd05704 S1_Rrp5_repeat_hs13 S1_Rrp5_repeat_hs13: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 13 (hs13). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.19 E-value=5.2e-11 Score=111.55 Aligned_cols=71 Identities=28% Similarity=0.409 Sum_probs=67.1
Q ss_pred CCCCCEEEEEEEEEec-ceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEe
Q 000227 1376 LSPNMIVQGYVKNVTS-KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1826)
Q Consensus 1376 l~~G~~v~G~V~~v~~-~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk 1448 (1826)
|++|+++.|.|+++.+ +|+||+|+++.+|++|+++++|.|+.+|.+.|++||.|+|+|+++|. +++.||+|
T Consensus 1 l~~G~iv~G~V~~i~~~~g~~v~l~~~~~Glvhis~~s~~~~~~~~~~~~~Gd~v~~kV~~~~~--~~i~LSl~ 72 (72)
T cd05704 1 LEEGAVTLGMVTKVIPHSGLTVQLPFGKTGLVSIFHLSDSYTENPLEGFKPGKIVRCCILSKKD--GKYQLSLR 72 (72)
T ss_pred CCCCCEEEEEEEEeeCCcEEEEECCCCCEEEEEHHHhcCcccCCHHHhCCCCCEEEEEEEEecC--CEEEEEeC
Confidence 4789999999999986 89999999999999999999999999999999999999999999983 99999986
No 52
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.17 E-value=8.8e-11 Score=109.24 Aligned_cols=69 Identities=28% Similarity=0.622 Sum_probs=65.8
Q ss_pred CCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEee
Q 000227 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1826)
Q Consensus 1469 G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~Lsl 1538 (1826)
|+++.|+|++|.+||+||+|++ ++.|+||++++++.+..++.+.|++||.++++|+++|+++++|.|||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~-~v~g~i~~~~l~~~~~~~~~~~~~~Gd~i~~~V~~id~~~~~i~ls~ 69 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLSD-HIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRLVLTL 69 (69)
T ss_pred CCEEEEEEEEEeccEEEEEecC-CcEEEEEHHHCCCccccCHHHcCCCCCEEEEEEEEEECCCCEEEEEC
Confidence 7899999999999999999986 79999999999999888888999999999999999999999999985
No 53
>PRK08582 hypothetical protein; Provisional
Probab=99.15 E-value=1.1e-10 Score=122.87 Aligned_cols=75 Identities=28% Similarity=0.647 Sum_probs=70.5
Q ss_pred ccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeecc
Q 000227 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1826)
Q Consensus 1465 ~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s 1541 (1826)
.+++|++|.|+|++|++||+||.|++ +++||||+|++++.++.++.+.|++||.|+|+|+++|. +++|.||+|+.
T Consensus 2 ~~kvG~iv~G~V~~I~~fG~fV~L~~-~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~-~gkI~LSlk~~ 76 (139)
T PRK08582 2 SIEVGSKLQGKVTGITNFGAFVELPE-GKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVED-DGKIGLSIKKA 76 (139)
T ss_pred CCcCCCEEEEEEEEEECCeEEEEECC-CCEEEEEeeccCcccccccccccCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 37899999999999999999999986 79999999999999999999999999999999999996 59999999984
No 54
>PRK08582 hypothetical protein; Provisional
Probab=99.14 E-value=2e-10 Score=121.07 Aligned_cols=80 Identities=25% Similarity=0.431 Sum_probs=75.4
Q ss_pred CCCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEeccccccc
Q 000227 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSRTA 1455 (1826)
Q Consensus 1376 l~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~~~~~ 1455 (1826)
+++|++|.|+|++|+++|+||.|+++++|+||+++++|.|+.++.+.|++||.|+|+|+++|. +++|.||+|+...+||
T Consensus 3 ~kvG~iv~G~V~~I~~fG~fV~L~~~~~GlVhiSels~~~v~~~~~~l~vGD~VkvkV~~id~-~gkI~LSlk~~~~~~~ 81 (139)
T PRK08582 3 IEVGSKLQGKVTGITNFGAFVELPEGKTGLVHISEVADNYVKDINDHLKVGDEVEVKVLNVED-DGKIGLSIKKAKDRPK 81 (139)
T ss_pred CcCCCEEEEEEEEEECCeEEEEECCCCEEEEEeeccCcccccccccccCCCCEEEEEEEEECC-CCcEEEEEEecccCch
Confidence 689999999999999999999999999999999999999999999999999999999999996 5999999999887765
Q ss_pred c
Q 000227 1456 S 1456 (1826)
Q Consensus 1456 ~ 1456 (1826)
.
T Consensus 82 ~ 82 (139)
T PRK08582 82 R 82 (139)
T ss_pred h
Confidence 3
No 55
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.14 E-value=1e-10 Score=108.49 Aligned_cols=68 Identities=31% Similarity=0.503 Sum_probs=65.6
Q ss_pred CCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEE
Q 000227 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1826)
Q Consensus 762 G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LS 829 (1826)
|+++.|+|++++++|+||+|.+++.||+|.+++++.+..++.+.|++||.|+|+|+++|++++|+.||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls 68 (68)
T cd05707 1 GDVVRGFVKNIANNGVFVTLGRGVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDPDNGRIEMT 68 (68)
T ss_pred CCEEEEEEEEEECccEEEEeCCCCEEEEEHHHCCchhhcCHhhccCCCCEEEEEEEEEeCCCCEEecC
Confidence 78899999999999999999999999999999999999999999999999999999999999999886
No 56
>cd05697 S1_Rrp5_repeat_hs5 S1_Rrp5_repeat_hs5: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 5 (hs5) and S. cerevisiae S1 repeat 5 (sc5). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.13 E-value=1.6e-10 Score=107.56 Aligned_cols=69 Identities=38% Similarity=0.552 Sum_probs=66.5
Q ss_pred CCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEE
Q 000227 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447 (1826)
Q Consensus 1379 G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSl 1447 (1826)
|+++.|+|+++.++|+||+|+++++|++|+++++|.+..++.+.|++||.++++|+++|++++++.|||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~~v~g~i~~~~l~~~~~~~~~~~~~~Gd~i~~~V~~id~~~~~i~ls~ 69 (69)
T cd05697 1 GQVVKGTIRKLRPSGIFVKLSDHIKGLVPPMHLADVRLKHPEKKFKPGLKVKCRVLSVEPERKRLVLTL 69 (69)
T ss_pred CCEEEEEEEEEeccEEEEEecCCcEEEEEHHHCCCccccCHHHcCCCCCEEEEEEEEEECCCCEEEEEC
Confidence 789999999999999999999999999999999999888999999999999999999999999999986
No 57
>cd05707 S1_Rrp5_repeat_sc11 S1_Rrp5_repeat_sc11: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 11 (sc11). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.13 E-value=1.5e-10 Score=107.33 Aligned_cols=68 Identities=31% Similarity=0.564 Sum_probs=64.9
Q ss_pred CCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEe
Q 000227 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1826)
Q Consensus 1469 G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~Ls 1537 (1826)
|+++.|+|+++.++|+||+|.+ ++.|++|++++++++..++.+.|++||.|+|+|+++|++++||.||
T Consensus 1 G~~v~g~V~~v~~~Gv~V~l~~-~~~G~v~~s~l~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls 68 (68)
T cd05707 1 GDVVRGFVKNIANNGVFVTLGR-GVDARVRVSELSDSYLKDWKKRFKVGQLVKGKIVSIDPDNGRIEMT 68 (68)
T ss_pred CCEEEEEEEEEECccEEEEeCC-CCEEEEEHHHCCchhhcCHhhccCCCCEEEEEEEEEeCCCCEEecC
Confidence 7899999999999999999986 7999999999999999999999999999999999999999999886
No 58
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=99.12 E-value=2.8e-10 Score=107.96 Aligned_cols=74 Identities=31% Similarity=0.556 Sum_probs=69.3
Q ss_pred CCCCEEEEEEEEEeeceEEEEEecC-ceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeec
Q 000227 1467 HVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1826)
Q Consensus 1467 ~~G~iv~G~V~~v~~~GvFV~l~~~-~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~ 1540 (1826)
++|+++.|+|.++.+||+||+|.+. ++.||+|+|++++.+..++.+.|++||.|+|+|+++|.+++++.||+|.
T Consensus 2 ~~G~~~~g~V~~v~~~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vkv~~~d~~~~~i~ls~k~ 76 (76)
T cd04452 2 EEGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKVIRVDKEKGYIDLSKKR 76 (76)
T ss_pred CCCCEEEEEEEEEEccEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEEEEEEEEEECCCCEEEEEEcC
Confidence 5799999999999999999999742 5999999999999999999999999999999999999999999999974
No 59
>cd05696 S1_Rrp5_repeat_hs4 S1_Rrp5_repeat_hs4: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 4 (hs4). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.12 E-value=1.8e-10 Score=107.58 Aligned_cols=69 Identities=22% Similarity=0.323 Sum_probs=65.6
Q ss_pred CCEEE-EEEEEE-eeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEe
Q 000227 762 NSVVH-GYVCNI-IETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1826)
Q Consensus 762 G~~~~-G~V~~i-~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSl 830 (1826)
|+++. |.|+++ .++|+||++.+|+.||+|.|++++++..++.+.|++||.+.|+|+++|+.++|++|||
T Consensus 1 G~v~~~g~V~~v~~~~G~~V~l~~gv~G~i~~s~l~~~~~~~~~~~~~vG~~v~~kV~~id~~~~~i~lS~ 71 (71)
T cd05696 1 GAVVDSVKVTKVEPDLGAVFELKDGLLGFVHISHLSDDKVPSDTGPFKAGTTHKARIIGYSPMDGLLQLSL 71 (71)
T ss_pred CcEeeeeEEEEEccCceEEEEeCCCCEEEEEHHHCCcchhcCcccccCCCCEEEEEEEEEeCCCCEEEEeC
Confidence 67888 999998 7999999999999999999999999888999999999999999999999999999996
No 60
>cd05693 S1_Rrp5_repeat_hs1_sc1 S1_Rrp5_repeat_hs1_sc1: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 1 (hs1) and S. cerevisiae S1 repeat 1 (sc1). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.11 E-value=9.2e-11 Score=116.71 Aligned_cols=77 Identities=35% Similarity=0.513 Sum_probs=70.7
Q ss_pred CCCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCcc-------------------CCCCccCCCCcEEEEEEEEE
Q 000227 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV-------------------ESPEKEFPIGKLVAGRVLSV 1436 (1826)
Q Consensus 1376 l~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v-------------------~~~~~~f~vGq~V~~kVl~v 1436 (1826)
|++|++|.|.|++++++|+||.|+.+++|++|+++++|.|. .++.+.|++||.|+|+|+++
T Consensus 1 L~~G~vV~G~V~~v~~~gl~v~L~~g~~G~v~~seis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~vGd~V~~kVi~~ 80 (100)
T cd05693 1 LSEGMLVLGQVKEITKLDLVISLPNGLTGYVPITNISDAYTERLEELDEESEEEDDEEELPDLEDLFSVGQLVRCKVVSL 80 (100)
T ss_pred CCCCCEEEEEEEEEcCCCEEEECCCCcEEEEEHHHhhHHHHHHHHHhhhhccccccccccCCHHHhccCCCEEEEEEEEc
Confidence 57899999999999999999999999999999999999773 34778999999999999999
Q ss_pred eCC---CCeEEEEEecccc
Q 000227 1437 EPL---SKRVEVTLKTSDS 1452 (1826)
Q Consensus 1437 d~e---~~rI~lSlk~s~~ 1452 (1826)
|++ +++|.||+|++..
T Consensus 81 d~~~~~~~~i~LSlr~~~v 99 (100)
T cd05693 81 DKSKSGKKRIELSLEPELV 99 (100)
T ss_pred cCCcCCCcEEEEEecHHHC
Confidence 987 7999999999764
No 61
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.10 E-value=2.3e-10 Score=106.44 Aligned_cols=68 Identities=37% Similarity=0.770 Sum_probs=62.9
Q ss_pred CCEEEEEEEEEeeceEEEEEecCceEEEEEccccCc-ccccCccccCCCCCEEEEEEEEEeCCCCeEEEe
Q 000227 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE-DHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1826)
Q Consensus 1469 G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~-~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~Ls 1537 (1826)
|+++.|+|+++.+||+||+|.+ +++||+|+++++| .+..++.+.|++||.|+|+|+++|.+++||.||
T Consensus 1 G~~~~g~V~~i~~~G~fv~l~~-~~~Glv~~~~l~~~~~~~~~~~~~~~G~~v~v~v~~id~~~~~i~l~ 69 (69)
T cd05690 1 GTVVSGKIKSITDFGIFVGLDG-GIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNIDVERERISLG 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEeCC-CCEEEEEHHHCCCccccCChhhEECCCCEEEEEEEEEECCcCEEeCC
Confidence 7899999999999999999986 7999999999996 566778889999999999999999999999885
No 62
>PRK07252 hypothetical protein; Provisional
Probab=99.09 E-value=4.2e-10 Score=115.45 Aligned_cols=74 Identities=32% Similarity=0.666 Sum_probs=70.3
Q ss_pred CCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeecc
Q 000227 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1826)
Q Consensus 1467 ~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s 1541 (1826)
++|++|.|+|++|.+||+||+|.+ ++.|++|+|+++++++.+....|++||.|+|+|+++|.++++|.||+|..
T Consensus 2 kvG~iv~G~V~~V~~~G~fVei~~-~~~GllhiseLs~~~~~~~~~~~~vGD~V~VkI~~iD~~~~ri~lSlk~~ 75 (120)
T PRK07252 2 KIGDKLKGTITGIKPYGAFVALEN-GTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDFDEYTGKASLSLRTL 75 (120)
T ss_pred CCCCEEEEEEEEEeCcEEEEEECC-CCEEEEEHHHcCCccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEeec
Confidence 579999999999999999999976 69999999999999998888999999999999999999999999999884
No 63
>PRK05807 hypothetical protein; Provisional
Probab=99.06 E-value=5.3e-10 Score=117.53 Aligned_cols=74 Identities=31% Similarity=0.643 Sum_probs=69.5
Q ss_pred ccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeecc
Q 000227 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1826)
Q Consensus 1465 ~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s 1541 (1826)
.+++|++|.|+|+.|.+||+||.| + +..||+|+|++++.++.++...|++||.|+|+|+++|. +++|.||+|+.
T Consensus 2 ~~~vG~vv~G~Vt~i~~~GafV~L-~-~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV~~id~-~gkI~LSlk~~ 75 (136)
T PRK05807 2 TLKAGSILEGTVVNITNFGAFVEV-E-GKTGLVHISEVADTYVKDIREHLKEQDKVKVKVISIDD-NGKISLSIKQA 75 (136)
T ss_pred CccCCCEEEEEEEEEECCeEEEEE-C-CEEEEEEhhhcccccccCccccCCCCCEEEEEEEEECC-CCcEEEEEEec
Confidence 467899999999999999999999 4 68999999999999999999999999999999999997 79999999984
No 64
>PRK07252 hypothetical protein; Provisional
Probab=99.06 E-value=6.4e-10 Score=114.11 Aligned_cols=76 Identities=24% Similarity=0.319 Sum_probs=72.3
Q ss_pred CCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEeccccc
Q 000227 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1826)
Q Consensus 760 ~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~~~ 835 (1826)
++|+++.|.|++|+++|+||++.+++.||+|.+++++.+..++...|++||.|+|+|+++|.+++|+.||++....
T Consensus 2 kvG~iv~G~V~~V~~~G~fVei~~~~~GllhiseLs~~~~~~~~~~~~vGD~V~VkI~~iD~~~~ri~lSlk~~~~ 77 (120)
T PRK07252 2 KIGDKLKGTITGIKPYGAFVALENGTTGLIHISEIKTGFIDNIHQLLKVGEEVLVQVVDFDEYTGKASLSLRTLEE 77 (120)
T ss_pred CCCCEEEEEEEEEeCcEEEEEECCCCEEEEEHHHcCCccccChhhccCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 5799999999999999999999999999999999999988889999999999999999999999999999998754
No 65
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.05 E-value=9.2e-10 Score=131.18 Aligned_cols=128 Identities=14% Similarity=0.235 Sum_probs=106.9
Q ss_pred CCHHHHHHHHHhCCCchhHHHHHHHHHHh-cCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000227 1670 RTPDEFERLVRSSPNSSFVWIKYMAFMLS-MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1748 (1826)
Q Consensus 1670 ~s~~~fer~l~~~p~ss~lWi~y~~f~l~-~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~ 1748 (1826)
.++..|++++...+-...+|++||.+|++ .++.+.||+|+|+|++..+.+. .+|+.|++++...| +.+++|.
T Consensus 19 ~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~-----~~~~~Y~~~l~~~~--d~~~aR~ 91 (280)
T PF05843_consen 19 AARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP-----DFWLEYLDFLIKLN--DINNARA 91 (280)
T ss_dssp HHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H-----HHHHHHHHHHHHTT---HHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHhC--cHHHHHH
Confidence 34889999986666689999999999999 5778889999999999877654 48999999999999 9999999
Q ss_pred HHHHHHhcCCcHH----HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 000227 1749 VFQRALQYCDPKK----VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFH 1804 (1826)
Q Consensus 1749 vf~~a~~~~~~~k----v~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~ 1804 (1826)
+|+||+...+..+ +|.+|++++.+.|+++.++.+++++...|+....++.-.-++.
T Consensus 92 lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ry~ 151 (280)
T PF05843_consen 92 LFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSDRYS 151 (280)
T ss_dssp HHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCCT-
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence 9999997666555 9999999999999999999999999999998777777555543
No 66
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.05 E-value=7.1e-10 Score=104.31 Aligned_cols=71 Identities=32% Similarity=0.650 Sum_probs=67.9
Q ss_pred CCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeec
Q 000227 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1826)
Q Consensus 1469 G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~ 1540 (1826)
|++|.|+|+++.++|+||+|.+ ++.|+||++++++++..++.+.|++||.++|+|+++|.+++++.||+|.
T Consensus 1 G~~v~g~V~~v~~~g~~v~l~~-~~~g~i~~~~~~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls~k~ 71 (73)
T cd05691 1 GSIVTGKVTEVDAKGATVKLGD-GVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDRKNRKISLSIKA 71 (73)
T ss_pred CCEEEEEEEEEECCeEEEEeCC-CCEEEEEHHHCCCccccCHHHccCCCCEEEEEEEEEeCCCCEEEEEEEE
Confidence 7899999999999999999986 7999999999999998899999999999999999999999999999986
No 67
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.05 E-value=3.8e-10 Score=102.64 Aligned_cols=72 Identities=26% Similarity=0.412 Sum_probs=66.2
Q ss_pred CCEEEEEEEEEecCeEEEEEEecCceEEEeeCcccccccccccccccccCCCCEEEEEEEeecCCCeEEEecc
Q 000227 670 GSLVSGVVDVVTPNAVVVYVIAKGYSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSAK 742 (1826)
Q Consensus 670 G~iv~g~V~~v~~~g~~V~l~~~~~v~G~i~~~hLsd~~~~~~~l~~~lk~G~~i~~vl~id~~~~~v~ls~K 742 (1826)
|++|+|+|.++++++++|++. ..+++|+||.+||||+..+++.+++++++||++..+|+++...+.+.+|+|
T Consensus 1 G~lV~~~V~EKt~D~l~v~l~-~~~l~a~l~~~HLsD~~~k~~~~~~klrvG~~L~~~lvL~~~~r~i~lt~K 72 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAIL-PEEIRAFLPTMHLSDHVSNCPLLWHCLQEGDTIPNLMCLSNYKGRIILTKK 72 (72)
T ss_pred CceEEEEEEEEcCCcEEEEec-CCCcEEEEEccccCCchhhCHHHHhhhhcCCCccceEEEeccccEEEEecC
Confidence 789999999999999999993 249999999999999999999999999999999888888888888999986
No 68
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.04 E-value=7.3e-10 Score=104.01 Aligned_cols=71 Identities=34% Similarity=0.627 Sum_probs=63.9
Q ss_pred cCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcc-cccCccccCCCCCEEEEEEEEEeCCCCeEEEe
Q 000227 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED-HVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1826)
Q Consensus 1466 ~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~-~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~Ls 1537 (1826)
|++|+++.|+|+++.+||+||+|.+ +++||+|++++.+. +..+..+.|++||.|+|+|+++|.++++|.|+
T Consensus 1 ~~~g~~~~g~V~~i~~~G~fv~l~~-~~~Gl~~~~~l~~~~~~~~~~~~~~~Gd~v~v~v~~id~~~~~i~~~ 72 (72)
T cd05689 1 YPEGTRLFGKVTNLTDYGCFVELEE-GVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERRRISLG 72 (72)
T ss_pred CcCCCEEEEEEEEEEeeEEEEEcCC-CCEEEEEEEeccCcccccCcccEeCCCCEEEEEEEEeeCCcCEEeCC
Confidence 5789999999999999999999987 69999999999864 44466688999999999999999999999875
No 69
>cd05690 S1_RPS1_repeat_ec5 S1_RPS1_repeat_ec5: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 5 (ec5) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.04 E-value=5e-10 Score=104.17 Aligned_cols=68 Identities=29% Similarity=0.423 Sum_probs=63.6
Q ss_pred CCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCc-ccccCcccCCCCCCEEEEEEEEeeCCCCeEEEE
Q 000227 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVD-GQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1826)
Q Consensus 762 G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~-~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LS 829 (1826)
|+++.|.|++|+++|+||+|.+++.||+|.++++| ....++.+.|++||.|+|+|+++|.+++|+.|+
T Consensus 1 G~~~~g~V~~i~~~G~fv~l~~~~~Glv~~~~l~~~~~~~~~~~~~~~G~~v~v~v~~id~~~~~i~l~ 69 (69)
T cd05690 1 GTVVSGKIKSITDFGIFVGLDGGIDGLVHISDISWTQRVRHPSEIYKKGQEVEAVVLNIDVERERISLG 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEeCCCCEEEEEHHHCCCccccCChhhEECCCCEEEEEEEEEECCcCEEeCC
Confidence 68899999999999999999999999999999996 567788889999999999999999999999875
No 70
>cd05708 S1_Rrp5_repeat_sc12 S1_Rrp5_repeat_sc12: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes S. cerevisiae S1 repeat 12 (sc12). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.03 E-value=7.9e-10 Score=105.09 Aligned_cols=74 Identities=32% Similarity=0.558 Sum_probs=69.8
Q ss_pred CCCCEEEEEEEEEeeceEEEEECC-CeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEeccc
Q 000227 760 HPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1826)
Q Consensus 760 ~~G~~~~G~V~~i~~~GvfV~f~~-gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~ 833 (1826)
++|+++.|+|++++++|+||++.+ ++.||+|.+++++++..++.+.|++||.|+|+|+++|++++++.||+|++
T Consensus 1 ~~g~~v~g~V~~i~~~g~~v~l~~~~~~g~i~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls~k~~ 75 (77)
T cd05708 1 KVGQKIDGTVRRVEDYGVFIDIDGTNVSGLCHKSEISDNRVADASKLFRVGDKVRAKVLKIDAEKKRISLGLKAS 75 (77)
T ss_pred CCCCEEEEEEEEEEcceEEEEECCCCeEEEEEHHHCCCCccCCHhHeecCCCEEEEEEEEEeCCCCEEEEEEEee
Confidence 369999999999999999999985 89999999999998888899999999999999999999999999999875
No 71
>cd04452 S1_IF2_alpha S1_IF2_alpha: The alpha subunit of translation Initiation Factor 2, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Eukaryotic and archaeal Initiation Factor 2 (e- and aIF2, respectively) are heterotrimeric proteins with three subunits (alpha, beta, and gamma). IF2 plays a crucial role in the process of translation initiation. The IF2 gamma subunit contains a GTP-binding site. The IF2 beta and gamma subunits together are thought to be responsible for binding methionyl-initiator tRNA. The ternary complex consisting of IF2, GTP, and the methionyl-initiator tRNA binds to the small subunit of the ribosome, as part of a pre-initiation complex that scans the mRNA to find the AUG start codon. The IF2-bound GTP is hydrolyzed to GDP when the methionyl-initiator tRNA binds the AUG start codon, at which time the IF2 is released with its bound GDP. The large ribosomal subunit then joins with the small subunit to c
Probab=99.03 E-value=1e-09 Score=104.06 Aligned_cols=73 Identities=26% Similarity=0.364 Sum_probs=68.7
Q ss_pred CCCCEEEEEEEEEeeceEEEEEC--CCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEecc
Q 000227 760 HPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1826)
Q Consensus 760 ~~G~~~~G~V~~i~~~GvfV~f~--~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~ 832 (1826)
+.|+++.|.|.++.++|+||++. +++.||+|.+++++.+..++.+.|++||.|+|+|+++|.+++++.||+++
T Consensus 2 ~~G~~~~g~V~~v~~~g~~v~l~~~~~~~gll~~s~l~~~~~~~~~~~~~~Gd~v~vkv~~~d~~~~~i~ls~k~ 76 (76)
T cd04452 2 EEGELVVVTVKSIADMGAYVSLLEYGNIEGMILLSELSRRRIRSIRKLVKVGRKEVVKVIRVDKEKGYIDLSKKR 76 (76)
T ss_pred CCCCEEEEEEEEEEccEEEEEEcCCCCeEEEEEhHHcCCcccCCHHHeeCCCCEEEEEEEEEECCCCEEEEEEcC
Confidence 46999999999999999999997 46999999999999999999999999999999999999999999999874
No 72
>cd05691 S1_RPS1_repeat_ec6 S1_RPS1_repeat_ec6: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 6 (ec6) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=99.02 E-value=1.2e-09 Score=102.84 Aligned_cols=72 Identities=24% Similarity=0.436 Sum_probs=69.1
Q ss_pred CCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEecc
Q 000227 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450 (1826)
Q Consensus 1379 G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s 1450 (1826)
|+++.|+|+++.++|+||+|..+++|++|++++++.+..++.+.|++||.++++|+++|++++++.||+|..
T Consensus 1 G~~v~g~V~~v~~~g~~v~l~~~~~g~i~~~~~~~~~~~~~~~~~~~Gd~v~~~v~~~d~~~~~i~ls~k~~ 72 (73)
T cd05691 1 GSIVTGKVTEVDAKGATVKLGDGVEGFLRAAELSRDRVEDATERFKVGDEVEAKITNVDRKNRKISLSIKAK 72 (73)
T ss_pred CCEEEEEEEEEECCeEEEEeCCCCEEEEEHHHCCCccccCHHHccCCCCEEEEEEEEEeCCCCEEEEEEEEc
Confidence 789999999999999999999999999999999999999999999999999999999999999999999864
No 73
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=99.01 E-value=9.8e-10 Score=101.09 Aligned_cols=66 Identities=27% Similarity=0.516 Sum_probs=60.7
Q ss_pred CCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEe
Q 000227 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1826)
Q Consensus 1469 G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~Ls 1537 (1826)
|+++.|+|+++.++|+||+|.+ +++|++|.+++++.+.. .+.|++||.|+|+|+.+|++++||.||
T Consensus 1 G~~V~g~V~~i~~~G~~v~l~~-~v~g~v~~~~l~~~~~~--~~~~~~G~~i~~kVi~id~~~~~i~LS 66 (66)
T cd05695 1 GMLVNARVKKVLSNGLILDFLS-SFTGTVDFLHLDPEKSS--KSTYKEGQKVRARILYVDPSTKVVGLS 66 (66)
T ss_pred CCEEEEEEEEEeCCcEEEEEcC-CceEEEEHHHcCCccCc--ccCcCCCCEEEEEEEEEeCCCCEEecC
Confidence 7899999999999999999976 79999999999876544 778999999999999999999999886
No 74
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae.
Probab=98.99 E-value=1.9e-09 Score=103.21 Aligned_cols=71 Identities=34% Similarity=0.601 Sum_probs=65.7
Q ss_pred CCEEEEEEEEEeeceEEEEEecC--ceEEEEEccccCcccc-cCccccCCCCCEEEEEEEEEeCCCCeEEEeeecc
Q 000227 1469 GDIVIGQIKRVESYGLFITIENT--NLVGLCHVSELSEDHV-DNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1826)
Q Consensus 1469 G~iv~G~V~~v~~~GvFV~l~~~--~v~Gl~h~sels~~~~-~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s 1541 (1826)
|+++.|+|+++.+||+||+|++. +++||+|++++++.+. .+..+.|++||.|+++|+++| ++++.||+|..
T Consensus 1 G~~~~g~V~~v~~~G~fv~l~~~~~~~~gll~~s~l~~~~~~~~~~~~~~~Gd~v~v~v~~vd--~~~i~~s~k~~ 74 (79)
T cd05684 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVISIQ--NGKISLSMKDV 74 (79)
T ss_pred CCEEEEEEEEEEeeeEEEEEeCCCCCcEEEEEhHhccCCCCcCChhheeCCCCEEEEEEEEEe--CCEEEEEEEec
Confidence 78999999999999999999853 6999999999999886 888889999999999999999 89999999883
No 75
>cd05686 S1_pNO40 S1_pNO40: pNO40 , S1-like RNA-binding domain. pNO40 is a nucleolar protein of unknown function with an N-terminal S1 RNA binding domain, a CCHC type zinc finger, and clusters of basic amino acids representing a potential nucleolar targeting signal. pNO40 was identified through a yeast two-hybrid interaction screen of a human kidney cDNA library using the pinin (pnn) protein as bait. pNO40 is thought to play a role in ribosome maturation and/or biogenesis.
Probab=98.99 E-value=1.8e-09 Score=101.64 Aligned_cols=70 Identities=26% Similarity=0.406 Sum_probs=64.7
Q ss_pred CCCCEEEEEEEEEeeceEEEEECC-CeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEe
Q 000227 760 HPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1826)
Q Consensus 760 ~~G~~~~G~V~~i~~~GvfV~f~~-gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSl 830 (1826)
..|+++.|.|+++++||+||++.+ ++.||+|.+++++.+..++.+.|++||.|.|+|+++|.++ |+.||+
T Consensus 2 ~~g~~~~g~V~~i~~fG~fv~l~~~~~eGlvh~sel~~~~~~~~~~~~~~Gd~v~vkv~~vd~~~-ki~ls~ 72 (73)
T cd05686 2 ALYQIFKGEVASVTEYGAFVKIPGCRKQGLVHKSHMSSCRVDDPSEVVDVGEKVWVKVIGREMKD-KMKLSL 72 (73)
T ss_pred cCCCEEEEEEEEEEeeeEEEEECCCCeEEEEEchhhCCCcccCHhhEECCCCEEEEEEEEECCCC-cEEEEe
Confidence 369999999999999999999955 3799999999999988899999999999999999999976 999986
No 76
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.99 E-value=1.8e-09 Score=100.80 Aligned_cols=70 Identities=30% Similarity=0.534 Sum_probs=66.5
Q ss_pred CCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeee
Q 000227 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1826)
Q Consensus 1469 G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK 1539 (1826)
|++|.|+|.++.++|+||.|.. +..|++|++|+++.+..++.+.|++||.++|+|+++|+++++|.||+|
T Consensus 1 G~iv~g~V~~i~~~~~~v~l~~-~~~g~l~~~e~~~~~~~~~~~~~~~Gd~i~~~i~~~~~~~~~i~lS~~ 70 (70)
T cd05687 1 GDIVKGTVVSVDDDEVLVDIGY-KSEGIIPISEFSDDPIENGEDEVKVGDEVEVYVLRVEDEEGNVVLSKR 70 (70)
T ss_pred CCEEEEEEEEEeCCEEEEEeCC-CceEEEEHHHhCccccCCHhHcCCCCCEEEEEEEEEECCCCeEEEEeC
Confidence 7899999999999999999965 799999999999999999999999999999999999988999999985
No 77
>cd05689 S1_RPS1_repeat_ec4 S1_RPS1_repeat_ec4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (ec4) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.98 E-value=1.5e-09 Score=101.95 Aligned_cols=71 Identities=27% Similarity=0.407 Sum_probs=64.5
Q ss_pred CCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcc-cccCcccCCCCCCEEEEEEEEeeCCCCeEEEE
Q 000227 759 IHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDG-QRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1826)
Q Consensus 759 ~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~-~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LS 829 (1826)
+++|+.+.|.|++|+++|+||+|.+++.||+|.++++|. ...++...|++||.|+|+|+++|.+++++.|+
T Consensus 1 ~~~g~~~~g~V~~i~~~G~fv~l~~~~~Gl~~~~~l~~~~~~~~~~~~~~~Gd~v~v~v~~id~~~~~i~~~ 72 (72)
T cd05689 1 YPEGTRLFGKVTNLTDYGCFVELEEGVEGLVHVSEMDWTNKNIHPSKVVSLGDEVEVMVLDIDEERRRISLG 72 (72)
T ss_pred CcCCCEEEEEEEEEEeeEEEEEcCCCCEEEEEEEeccCcccccCcccEeCCCCEEEEEEEEeeCCcCEEeCC
Confidence 468999999999999999999999999999999999864 44577788999999999999999999999874
No 78
>cd05687 S1_RPS1_repeat_ec1_hs1 S1_RPS1_repeat_ec1_hs1: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 1 of the Escherichia coli and Homo sapiens RPS1 (ec1 and hs1, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.97 E-value=2.2e-09 Score=100.11 Aligned_cols=70 Identities=27% Similarity=0.334 Sum_probs=67.5
Q ss_pred CCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEe
Q 000227 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1826)
Q Consensus 1379 G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk 1448 (1826)
|++|.|+|.++.++|+||+|+.+.+|++|.+++++.+..+|.+.|++||.++++|+++|++++++.||+|
T Consensus 1 G~iv~g~V~~i~~~~~~v~l~~~~~g~l~~~e~~~~~~~~~~~~~~~Gd~i~~~i~~~~~~~~~i~lS~~ 70 (70)
T cd05687 1 GDIVKGTVVSVDDDEVLVDIGYKSEGIIPISEFSDDPIENGEDEVKVGDEVEVYVLRVEDEEGNVVLSKR 70 (70)
T ss_pred CCEEEEEEEEEeCCEEEEEeCCCceEEEEHHHhCccccCCHhHcCCCCCEEEEEEEEEECCCCeEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999988999999985
No 79
>PRK08059 general stress protein 13; Validated
Probab=98.97 E-value=2.2e-09 Score=111.45 Aligned_cols=78 Identities=36% Similarity=0.748 Sum_probs=73.2
Q ss_pred ccccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeecc
Q 000227 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1826)
Q Consensus 1463 ~~~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s 1541 (1826)
+.++++|++|.|+|.++.++|+||.|.+ ++.|++|++++++.++.+....|++||.|+|+|+++|.+++++.||+|+.
T Consensus 2 ~~~~k~G~iv~G~V~~i~~~G~fV~i~~-~~~Gli~~sel~~~~~~~~~~~~~vGD~I~vkI~~id~~~~~i~lslk~~ 79 (123)
T PRK08059 2 MSQYEVGSVVTGKVTGIQPYGAFVALDE-ETQGLVHISEITHGFVKDIHDFLSVGDEVKVKVLSVDEEKGKISLSIRAT 79 (123)
T ss_pred cccCCCCCEEEEEEEEEecceEEEEECC-CCEEEEEHHHCCcccccCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEEc
Confidence 3568999999999999999999999986 79999999999999988888899999999999999999999999999985
No 80
>cd05695 S1_Rrp5_repeat_hs3 S1_Rrp5_repeat_hs3: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 3 (hs3). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.97 E-value=1.6e-09 Score=99.72 Aligned_cols=66 Identities=29% Similarity=0.384 Sum_probs=60.6
Q ss_pred CCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEE
Q 000227 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1826)
Q Consensus 762 G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LS 829 (1826)
|+++.|.|++++++|+||++.+++.||+|.++++..... .+.|++||.|.|+|+.+|++++|+.||
T Consensus 1 G~~V~g~V~~i~~~G~~v~l~~~v~g~v~~~~l~~~~~~--~~~~~~G~~i~~kVi~id~~~~~i~LS 66 (66)
T cd05695 1 GMLVNARVKKVLSNGLILDFLSSFTGTVDFLHLDPEKSS--KSTYKEGQKVRARILYVDPSTKVVGLS 66 (66)
T ss_pred CCEEEEEEEEEeCCcEEEEEcCCceEEEEHHHcCCccCc--ccCcCCCCEEEEEEEEEeCCCCEEecC
Confidence 789999999999999999999999999999999765443 778999999999999999999999886
No 81
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.95 E-value=2.7e-09 Score=98.86 Aligned_cols=69 Identities=35% Similarity=0.783 Sum_probs=65.2
Q ss_pred CCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeee
Q 000227 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1826)
Q Consensus 1469 G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK 1539 (1826)
|+++.|+|+++.++|+||.|.+ +..|++|+++++++++.++.+.|++||.|+++|+++|. ++++.||+|
T Consensus 1 G~~~~g~V~~i~~~g~~v~i~~-~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~~~-~~~i~ls~k 69 (69)
T cd05692 1 GSVVEGTVTRLKPFGAFVELGG-GISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSIDA-RGRISLSIK 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEECC-CCEEEEEhHHcCCcccCCHHHccCCCCEEEEEEEEECC-CCcEEEEEC
Confidence 7899999999999999999976 79999999999999888888999999999999999998 899999986
No 82
>PRK05807 hypothetical protein; Provisional
Probab=98.94 E-value=3.8e-09 Score=111.13 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=70.5
Q ss_pred CCCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEeccc
Q 000227 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1826)
Q Consensus 1376 l~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~ 1451 (1826)
+++|++|.|.|+.++++|+||.| .+..|+||++++++.|+.++.+.|++||.|+++|+++|. +++|.||+|...
T Consensus 3 ~~vG~vv~G~Vt~i~~~GafV~L-~~~~Glvhiseis~~~v~~~~~~~kvGd~V~VkV~~id~-~gkI~LSlk~~~ 76 (136)
T PRK05807 3 LKAGSILEGTVVNITNFGAFVEV-EGKTGLVHISEVADTYVKDIREHLKEQDKVKVKVISIDD-NGKISLSIKQAM 76 (136)
T ss_pred ccCCCEEEEEEEEEECCeEEEEE-CCEEEEEEhhhcccccccCccccCCCCCEEEEEEEEECC-CCcEEEEEEecc
Confidence 67899999999999999999999 589999999999999999999999999999999999997 799999999975
No 83
>PRK08059 general stress protein 13; Validated
Probab=98.94 E-value=4.1e-09 Score=109.36 Aligned_cols=81 Identities=20% Similarity=0.419 Sum_probs=76.6
Q ss_pred ccCCCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEeccccc
Q 000227 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1826)
Q Consensus 1374 ~~l~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~~~ 1453 (1826)
.++++|+++.|.|.++.++|+||+++.+++|++|++++++.++.++.+.|++||.|.|+|+++|.+++++.+|+|....+
T Consensus 3 ~~~k~G~iv~G~V~~i~~~G~fV~i~~~~~Gli~~sel~~~~~~~~~~~~~vGD~I~vkI~~id~~~~~i~lslk~~~~~ 82 (123)
T PRK08059 3 SQYEVGSVVTGKVTGIQPYGAFVALDEETQGLVHISEITHGFVKDIHDFLSVGDEVKVKVLSVDEEKGKISLSIRATEEA 82 (123)
T ss_pred ccCCCCCEEEEEEEEEecceEEEEECCCCEEEEEHHHCCcccccCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEEcccC
Confidence 45889999999999999999999999999999999999999998888999999999999999999999999999998775
Q ss_pred c
Q 000227 1454 T 1454 (1826)
Q Consensus 1454 ~ 1454 (1826)
|
T Consensus 83 ~ 83 (123)
T PRK08059 83 P 83 (123)
T ss_pred c
Confidence 4
No 84
>PHA02945 interferon resistance protein; Provisional
Probab=98.93 E-value=3.7e-09 Score=98.69 Aligned_cols=73 Identities=25% Similarity=0.373 Sum_probs=67.5
Q ss_pred cCCCCEEEEEEEEEeeceEEEEEecC-ceEEEEEcccc--CcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeecc
Q 000227 1466 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSEL--SEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1826)
Q Consensus 1466 ~~~G~iv~G~V~~v~~~GvFV~l~~~-~v~Gl~h~sel--s~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s 1541 (1826)
..+|+++.|+|+. .+||+||.|+.= +..||+|+||+ +..++++ .+.+ +||+|.|+|+.+|+.++.|-||||.-
T Consensus 9 P~~GelvigtV~~-~d~ga~v~L~EY~g~eg~i~~seveva~~wvK~-rd~l-~GqkvV~KVirVd~~kg~IDlSlK~V 84 (88)
T PHA02945 9 PNVGDVLKGKVYE-NGYALYIDLFDYPHSEAILAESVQMHMNRYFKY-RDKL-VGKTVKVKVIRVDYTKGYIDVNYKRM 84 (88)
T ss_pred CCCCcEEEEEEEe-cCceEEEEecccCCcEEEEEeehhhhccceEee-eeEe-cCCEEEEEEEEECCCCCEEEeEeeEc
Confidence 4689999999999 999999999853 89999999955 9999999 8888 99999999999999999999999973
No 85
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=98.93 E-value=2.7e-09 Score=98.60 Aligned_cols=68 Identities=31% Similarity=0.603 Sum_probs=64.1
Q ss_pred CCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEe
Q 000227 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1826)
Q Consensus 1469 G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~Ls 1537 (1826)
|+++.|+|+++.++|+||+|.+ +..|+||.+++++.+..++...|++||.|+|+|+++|.+++++.||
T Consensus 1 g~~~~g~V~~i~~~G~fv~l~~-~~~g~~~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIGV-KQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERGRISLS 68 (68)
T ss_pred CCEEEEEEEEEecccEEEEcCC-CCEEEEEHHHCCCccccCHHHhcCCCCEEEEEEEEEECCCCEEecC
Confidence 7899999999999999999976 7999999999999988888889999999999999999999999876
No 86
>cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.87 E-value=7.5e-09 Score=95.72 Aligned_cols=67 Identities=27% Similarity=0.477 Sum_probs=61.6
Q ss_pred CCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEec
Q 000227 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLK 831 (1826)
Q Consensus 762 G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk 831 (1826)
|+.+.|.|.++.++|+||+| +|+.||+|.+++++.+..++.. .+||.+.|+|+++|.+++++.||.|
T Consensus 1 G~iv~g~V~~v~~~G~~v~l-~g~~gfip~s~~~~~~~~~~~~--~vG~~i~~~i~~vd~~~~~i~lS~k 67 (67)
T cd04465 1 GEIVEGKVTEKVKGGLIVDI-EGVRAFLPASQVDLRPVEDLDE--YVGKELKFKIIEIDRERNNIVLSRR 67 (67)
T ss_pred CCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHCCCcccCChHH--hCCCEEEEEEEEEeCCCCEEEEEcC
Confidence 78899999999999999999 8999999999999887777665 4999999999999999999999975
No 87
>cd05692 S1_RPS1_repeat_hs4 S1_RPS1_repeat_hs4: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 4 (hs4) of the H. sapiens RPS1 homolog. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.85 E-value=8.9e-09 Score=95.43 Aligned_cols=69 Identities=23% Similarity=0.404 Sum_probs=66.1
Q ss_pred CCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEe
Q 000227 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1826)
Q Consensus 1379 G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk 1448 (1826)
|+++.|.|.+++++|+||+++.+..|++|.+++++.++.++.+.|++||.|+++|+++|+ ++++.+|+|
T Consensus 1 G~~~~g~V~~i~~~g~~v~i~~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~~~-~~~i~ls~k 69 (69)
T cd05692 1 GSVVEGTVTRLKPFGAFVELGGGISGLVHISQIAHKRVKDVKDVLKEGDKVKVKVLSIDA-RGRISLSIK 69 (69)
T ss_pred CCEEEEEEEEEEeeeEEEEECCCCEEEEEhHHcCCcccCCHHHccCCCCEEEEEEEEECC-CCcEEEEEC
Confidence 789999999999999999999999999999999999999999999999999999999998 899999985
No 88
>cd05685 S1_Tex S1_Tex: The C-terminal S1 domain of a transcription accessory factor called Tex, which has been characterized in Bordetella pertussis and Pseudomonas aeruginosa. The tex gene is essential in Bortella pertusis and is named for its role in toxin expression. Tex has two functional domains, an N-terminal domain homologous to the Escherichia coli maltose repression protein, which is a poorly defined transcriptional factor, and a C-terminal S1 RNA-binding domain. Tex is found in prokaryotes, eukaryotes, and archaea.
Probab=98.84 E-value=6.7e-09 Score=96.01 Aligned_cols=68 Identities=31% Similarity=0.440 Sum_probs=64.5
Q ss_pred CCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEE
Q 000227 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1826)
Q Consensus 762 G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LS 829 (1826)
|+.+.|.|++++++|+||++.+++.||+|.+++++.+..++...|++||.|+|+|+++|++++++.||
T Consensus 1 g~~~~g~V~~i~~~G~fv~l~~~~~g~~~~~~l~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05685 1 GMVLEGVVTNVTDFGAFVDIGVKQDGLIHISKMADRFVSHPSDVVSVGDIVEVKVISIDEERGRISLS 68 (68)
T ss_pred CCEEEEEEEEEecccEEEEcCCCCEEEEEHHHCCCccccCHHHhcCCCCEEEEEEEEEECCCCEEecC
Confidence 67899999999999999999999999999999998888888889999999999999999999999875
No 89
>cd04465 S1_RPS1_repeat_ec2_hs2 S1_RPS1_repeat_ec2_hs2: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain.While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 2 of the Escherichia coli and Homo sapiens RPS1 (ec2 and hs2, respectively). Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.84 E-value=1.1e-08 Score=94.61 Aligned_cols=67 Identities=30% Similarity=0.370 Sum_probs=60.0
Q ss_pred CcEEEEEEEEEecceEEEEEcCCeEEEEeCcccCCCCCCCCCCCccCCCEEEEEEEEEccCCCEEEEEEe
Q 000227 586 RLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655 (1826)
Q Consensus 586 G~~~~G~V~~i~~~G~~V~~~~gv~G~vp~sel~~~~~~~~~~~~~vGq~V~vrVl~vd~~~~ri~lS~k 655 (1826)
|+++.|+|+++.++|++|+| +++.||+|.+++++....++.. .+||.++|+|+++|++++++.||++
T Consensus 1 G~iv~g~V~~v~~~G~~v~l-~g~~gfip~s~~~~~~~~~~~~--~vG~~i~~~i~~vd~~~~~i~lS~k 67 (67)
T cd04465 1 GEIVEGKVTEKVKGGLIVDI-EGVRAFLPASQVDLRPVEDLDE--YVGKELKFKIIEIDRERNNIVLSRR 67 (67)
T ss_pred CCEEEEEEEEEECCeEEEEE-CCEEEEEEHHHCCCcccCChHH--hCCCEEEEEEEEEeCCCCEEEEEcC
Confidence 78899999999999999999 8999999999998765555554 3899999999999999999999974
No 90
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=98.84 E-value=6.1e-09 Score=133.66 Aligned_cols=71 Identities=27% Similarity=0.595 Sum_probs=65.8
Q ss_pred ccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccC----cccccCccccCCCCCEEEEEEEEEeCCCCeEEEe
Q 000227 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELS----EDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1826)
Q Consensus 1465 ~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels----~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~Ls 1537 (1826)
.+++|++|.|+|++|.+||+||+|.+ +++||+|+|||+ +.++.++.+.|++||.|+++|++|| +++||+|+
T Consensus 644 ~~~vG~i~~GkV~~I~dfGaFVel~~-G~eGLvHISeisdls~~~rv~~~~dv~kvGd~V~VKVl~ID-~~gKI~L~ 718 (719)
T TIGR02696 644 MPEVGERFLGTVVKTTAFGAFVSLLP-GKDGLLHISQIRKLAGGKRVENVEDVLSVGQKIQVEIADID-DRGKLSLV 718 (719)
T ss_pred cCCCCCEEEEEEEEEECceEEEEecC-CceEEEEhhhccccccccCcCCHHHcCCCCCEEEEEEEEEC-CCCCeeec
Confidence 57999999999999999999999986 799999999996 4688999999999999999999999 58899886
No 91
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=3.6e-09 Score=117.83 Aligned_cols=74 Identities=34% Similarity=0.679 Sum_probs=71.0
Q ss_pred CCCCEEEEEEEEEeeceEEEEEec-CceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeec
Q 000227 1467 HVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1826)
Q Consensus 1467 ~~G~iv~G~V~~v~~~GvFV~l~~-~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~ 1540 (1826)
.+|++|-|+|++|.+||+||.|+. +|+.|++|+||++..++.++.+.+++||.|-|+|+++|++++.|.||||.
T Consensus 10 eeGEiVv~tV~~V~~~GAyv~L~EY~g~Eg~ihiSEvas~wVknIrd~vkegqkvV~kVlrVd~~rg~IDLSlkr 84 (269)
T COG1093 10 EEGEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLRVDPKRGHIDLSLKR 84 (269)
T ss_pred CCCcEEEEEEEEeeccccEEEeeccCCeeeeEEHHHHHHHHHHHHHHHhhcCCeEEEEEEEEcCCCCeEeeehhh
Confidence 589999999999999999999983 28999999999999999999999999999999999999999999999998
No 92
>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.82 E-value=1.3e-08 Score=94.13 Aligned_cols=68 Identities=40% Similarity=0.756 Sum_probs=63.8
Q ss_pred CCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEe
Q 000227 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1826)
Q Consensus 1468 ~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~Ls 1537 (1826)
+|+++.|+|.++.++|+||+|. ++.|++|.+++++.++.++.+.|++||.|+|+|+++|.+++++.||
T Consensus 1 ~g~~~~g~V~~v~~~g~~v~l~--~~~g~l~~~e~~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05688 1 EGDVVEGTVKSITDFGAFVDLG--GVDGLLHISDMSWGRVKHPSEVVNVGDEVEVKVLKIDKERKRISLG 68 (68)
T ss_pred CCCEEEEEEEEEEeeeEEEEEC--CeEEEEEhHHCCCccccCHhHEECCCCEEEEEEEEEECCCCEEecC
Confidence 4899999999999999999995 6999999999998888888889999999999999999999999876
No 93
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.82 E-value=1.1e-08 Score=99.72 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=67.5
Q ss_pred cCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCc----ccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeecc
Q 000227 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE----DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1826)
Q Consensus 1466 ~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~----~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s 1541 (1826)
+++|++|.|+|+++.++|+||.|++ ++.|++|++++++ .+..+..+.|++||.++|+|+++|++ +++.||+|..
T Consensus 4 p~~GdiV~g~V~~i~~~g~~v~i~~-~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~~~V~~~~~~-~~i~LS~~~~ 81 (86)
T cd05789 4 PEVGDVVIGRVTEVGFKRWKVDINS-PYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAEVQSVDSD-GSVSLHTRSL 81 (86)
T ss_pred CCCCCEEEEEEEEECCCEEEEECCC-CeEEEEEHHHccCCCCccchHHHHhhCCCCCEEEEEEEEECCC-CCEEEEeCcc
Confidence 4789999999999999999999976 7999999999985 44566778899999999999999966 9999999885
Q ss_pred cc
Q 000227 1542 YF 1543 (1826)
Q Consensus 1542 ~~ 1543 (1826)
.+
T Consensus 82 ~~ 83 (86)
T cd05789 82 KY 83 (86)
T ss_pred cc
Confidence 43
No 94
>cd05684 S1_DHX8_helicase S1_DHX8_helicase: The N-terminal S1 domain of human ATP-dependent RNA helicase DHX8, a DEAH (Asp-Glu-Ala-His) box polypeptide. The DEAH-box RNA helicases are thought to play key roles in pre-mRNA splicing and DHX8 facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. DHX8 is also known as HRH1 (human RNA helicase 1) in Homo sapiens and PRP22 in Saccharomyces cerevisiae.
Probab=98.82 E-value=1.8e-08 Score=96.34 Aligned_cols=73 Identities=25% Similarity=0.416 Sum_probs=67.5
Q ss_pred CCEEEEEEEEEecceEEEEeC---CCeEEEEEccccCCCcc-CCCCccCCCCcEEEEEEEEEeCCCCeEEEEEeccccc
Q 000227 1379 NMIVQGYVKNVTSKGCFIMLS---RKLDAKVLLSNLSDGYV-ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1826)
Q Consensus 1379 G~~v~G~V~~v~~~GvFV~l~---~~v~g~v~iselsd~~v-~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~~~ 1453 (1826)
|+++.|.|+++.++|+||+|+ ++++|++|+++++|.+. .++.+.|++||.|+++|+++| ++++.+|+|....+
T Consensus 1 G~~~~g~V~~v~~~G~fv~l~~~~~~~~gll~~s~l~~~~~~~~~~~~~~~Gd~v~v~v~~vd--~~~i~~s~k~~~~~ 77 (79)
T cd05684 1 GKIYKGKVTSIMDFGCFVQLEGLKGRKEGLVHISQLSFEGRVANPSDVVKRGQKVKVKVISIQ--NGKISLSMKDVDQD 77 (79)
T ss_pred CCEEEEEEEEEEeeeEEEEEeCCCCCcEEEEEhHhccCCCCcCChhheeCCCCEEEEEEEEEe--CCEEEEEEEecccC
Confidence 789999999999999999998 46999999999999986 899999999999999999999 89999999986643
No 95
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=98.81 E-value=7.2e-09 Score=135.65 Aligned_cols=78 Identities=32% Similarity=0.595 Sum_probs=72.2
Q ss_pred cccCCCCEEE-EEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeeccc
Q 000227 1464 SNLHVGDIVI-GQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1542 (1826)
Q Consensus 1464 ~~~~~G~iv~-G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s~ 1542 (1826)
.+.++|++|. |+|++|.+||+||+|.+ +++||||+|+|+|+++.+..+.|++||.|+|+|+++|. ++||.||+|...
T Consensus 749 ~~~~vG~iy~~g~V~~I~~FGaFVeL~~-g~EGLVHISeLs~~rv~~~~dv~kvGD~V~VkVi~ID~-~grI~LSlK~l~ 826 (891)
T PLN00207 749 MVPTVGDIYRNCEIKSIAPYGAFVEIAP-GREGLCHISELSSNWLAKPEDAFKVGDRIDVKLIEVND-KGQLRLSRRALL 826 (891)
T ss_pred cCcCCCcEEECcEEEEEeccEEEEEeCC-CCEEEEEhhhcCCccccCHHHhcCCCCEEEEEEEEECC-CCcEEEEEeccc
Confidence 4678999995 69999999999999987 79999999999999999999999999999999999996 899999999964
Q ss_pred c
Q 000227 1543 F 1543 (1826)
Q Consensus 1543 ~ 1543 (1826)
.
T Consensus 827 ~ 827 (891)
T PLN00207 827 P 827 (891)
T ss_pred c
Confidence 4
No 96
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=98.81 E-value=1.5e-08 Score=93.81 Aligned_cols=68 Identities=38% Similarity=0.747 Sum_probs=63.6
Q ss_pred CCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEee
Q 000227 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1826)
Q Consensus 1469 G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~Lsl 1538 (1826)
|+++.|+|.++.+||+||+|.+ +..|++|++++++.++.+..+.|++||.|+++|+++|+ ++++.||+
T Consensus 1 g~~~~g~V~~v~~~G~~v~l~~-~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~d~-~~~i~ls~ 68 (68)
T cd04472 1 GKIYEGKVVKIKDFGAFVEILP-GKDGLVHISELSDERVEKVEDVLKVGDEVKVKVIEVDD-RGRISLSR 68 (68)
T ss_pred CCEEEEEEEEEEEeEEEEEeCC-CCEEEEEhHHcCCccccCHHHccCCCCEEEEEEEEECC-CCcEEeeC
Confidence 7899999999999999999976 79999999999999888888899999999999999998 89999884
No 97
>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA.
Probab=98.79 E-value=2.3e-08 Score=96.51 Aligned_cols=71 Identities=38% Similarity=0.743 Sum_probs=62.4
Q ss_pred CCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCccccc-----------CccccCCCCCEEEEEEEEEeCCCCeEEE
Q 000227 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEKRRISL 1536 (1826)
Q Consensus 1468 ~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~-----------~~~~~~~~Gd~Vk~kVl~id~e~~rI~L 1536 (1826)
+|+++.|+|++|.++|+||+|.+.+++|++|.+++++++.. +....|++||.|+++|+++|.++++|.|
T Consensus 1 ~g~~~~g~V~~v~~~G~fv~l~~~~~~G~v~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~gd~v~v~v~~vd~~~~~i~~ 80 (83)
T cd04471 1 VGEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLGDKVKVRVVRVDLDRRKIDF 80 (83)
T ss_pred CCCEEEEEEEeEEeeeEEEEecCCCEEEEEEEEecCCCcEEEcccceEEEeccCCCEEcCCCEEEEEEEEeccccCEEEE
Confidence 48999999999999999999985469999999999876422 3447899999999999999999999999
Q ss_pred ee
Q 000227 1537 GM 1538 (1826)
Q Consensus 1537 sl 1538 (1826)
++
T Consensus 81 ~l 82 (83)
T cd04471 81 EL 82 (83)
T ss_pred EE
Confidence 86
No 98
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=98.77 E-value=2.5e-08 Score=92.78 Aligned_cols=72 Identities=32% Similarity=0.487 Sum_probs=68.1
Q ss_pred CCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEe
Q 000227 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk 1448 (1826)
++|+++.|+|.+++++|+||+++.++.|++|.+++++.+..++.+.|++||.|.++|++++++++++.+|++
T Consensus 1 ~~G~~v~g~V~~v~~~g~~v~i~~~~~g~l~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~~ 72 (72)
T smart00316 1 EVGDVVEGTVTEITPFGAFVDLGNGVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCCEEEEEEEEEEccEEEEEeCCCCEEEEEHHHCCccccCCHHHeecCCCEEEEEEEEEeCCCCEEEEEeC
Confidence 369999999999999999999999999999999999998888888999999999999999998899999985
No 99
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=98.77 E-value=2e-08 Score=116.86 Aligned_cols=76 Identities=33% Similarity=0.627 Sum_probs=71.3
Q ss_pred cCCCCEEEEEEEEEeeceEEEEEecC-ceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeecc
Q 000227 1466 LHVGDIVIGQIKRVESYGLFITIENT-NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1826)
Q Consensus 1466 ~~~G~iv~G~V~~v~~~GvFV~l~~~-~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s 1541 (1826)
.++|++|.|+|++|.+||+||+|.+. ++.||+|+|+++++++.++.+.|++||.|.|+|+++|.++++|.||+|..
T Consensus 6 P~~GdiV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V~vkVi~VD~~k~~I~LSlK~v 82 (262)
T PRK03987 6 PEEGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIRVDPRKGHIDLSLKRV 82 (262)
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEEEEEEEEEecccCeEEEEEEec
Confidence 46899999999999999999999753 79999999999999999999999999999999999999999999999973
No 100
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=98.77 E-value=2.5e-08 Score=97.11 Aligned_cols=76 Identities=21% Similarity=0.375 Sum_probs=67.0
Q ss_pred ccCCCCEEEEEEEEEeec--eEEEEEecCceEEEEEccccCc---ccccCccccCCCCCEEEEEEEEEeCCCCeEEEeee
Q 000227 1465 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSE---DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1826)
Q Consensus 1465 ~~~~G~iv~G~V~~v~~~--GvFV~l~~~~v~Gl~h~sels~---~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK 1539 (1826)
.+++|++|.|+|+++.+| |+||+|.+ +.+||+|+||++| .++.++.+.+++||.|.|+|++.....+.-.|+.+
T Consensus 4 ~~~~G~iy~g~V~~i~~~~~GaFV~l~~-g~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v~VqV~~~~~~~K~~~lt~~ 82 (88)
T cd04453 4 EPIVGNIYLGRVKKIVPGLQAAFVDIGL-GKNGFLHLSDILPAYFKKHKKIAKLLKEGQEILVQVVKEPIGTKGPRLTTN 82 (88)
T ss_pred cCCCCCEEEEEEEEeccCCcEEEEEeCC-CCEEEEEhHHcCchhccccCCHHHcCCCCCEEEEEEEEecCCCCCceEEEE
Confidence 567999999999999997 99999986 7999999999998 66778889999999999999998877777777665
Q ss_pred cc
Q 000227 1540 SS 1541 (1826)
Q Consensus 1540 ~s 1541 (1826)
-+
T Consensus 83 ~~ 84 (88)
T cd04453 83 IS 84 (88)
T ss_pred EE
Confidence 43
No 101
>smart00316 S1 Ribosomal protein S1-like RNA-binding domain.
Probab=98.76 E-value=3.1e-08 Score=92.20 Aligned_cols=72 Identities=42% Similarity=0.753 Sum_probs=67.2
Q ss_pred CCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeee
Q 000227 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMK 1539 (1826)
Q Consensus 1467 ~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK 1539 (1826)
++|+++.|+|.++.++|+||++.+ ++.|++|.+++.+.+..+....|++||.|+|+|+++|.+++++.||++
T Consensus 1 ~~G~~v~g~V~~v~~~g~~v~i~~-~~~g~l~~~~~~~~~~~~~~~~~~~G~~v~~~V~~~~~~~~~i~ls~~ 72 (72)
T smart00316 1 EVGDVVEGTVTEITPFGAFVDLGN-GVEGLIPISELSDKRVKDPEEVLKVGDEVKVKVLSVDEEKGRIILSLK 72 (72)
T ss_pred CCCCEEEEEEEEEEccEEEEEeCC-CCEEEEEHHHCCccccCCHHHeecCCCEEEEEEEEEeCCCCEEEEEeC
Confidence 369999999999999999999976 799999999999988778888999999999999999999999999975
No 102
>cd04472 S1_PNPase S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. This family is classified based on the S1 domain. PNPase nonspecifically removes the 3' nucleotides from mRNA, but is stalled by double-stranded RNA structures such as a stem-loop. Evidence shows that a minimum of 7-10 unpaired nucleotides at the 3' end, is required for PNPase degradation. It is suggested that PNPase also dephosphorylates the RNA 5' end. This additional activity may regulate the 5'-dependent activity of RNaseE in vivo.
Probab=98.76 E-value=2.7e-08 Score=92.09 Aligned_cols=68 Identities=28% Similarity=0.468 Sum_probs=64.2
Q ss_pred CCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEe
Q 000227 762 NSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1826)
Q Consensus 762 G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSl 830 (1826)
|+++.|.|.+++++|+||++.++..||+|.+++++.+..++.+.|++||.|.|+|.++|+ ++++.||+
T Consensus 1 g~~~~g~V~~v~~~G~~v~l~~~~~g~l~~~~l~~~~~~~~~~~~~~Gd~v~v~v~~~d~-~~~i~ls~ 68 (68)
T cd04472 1 GKIYEGKVVKIKDFGAFVEILPGKDGLVHISELSDERVEKVEDVLKVGDEVKVKVIEVDD-RGRISLSR 68 (68)
T ss_pred CCEEEEEEEEEEEeEEEEEeCCCCEEEEEhHHcCCccccCHHHccCCCCEEEEEEEEECC-CCcEEeeC
Confidence 678999999999999999999999999999999998888888899999999999999999 89999884
No 103
>PHA02945 interferon resistance protein; Provisional
Probab=98.75 E-value=3.4e-08 Score=92.36 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=67.2
Q ss_pred CCCCEEEEEEEEEecceEEEEeCC--CeEEEEEcccc--CCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEeccc
Q 000227 1377 SPNMIVQGYVKNVTSKGCFIMLSR--KLDAKVLLSNL--SDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~~GvFV~l~~--~v~g~v~isel--sd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~ 1451 (1826)
.+|+++.|+|+. .++|+||.|.. +++|++|+++. +..|+++ ++.. +||.+.|+||++|+.++.|.||||...
T Consensus 10 ~~GelvigtV~~-~d~ga~v~L~EY~g~eg~i~~seveva~~wvK~-rd~l-~GqkvV~KVirVd~~kg~IDlSlK~V~ 85 (88)
T PHA02945 10 NVGDVLKGKVYE-NGYALYIDLFDYPHSEAILAESVQMHMNRYFKY-RDKL-VGKTVKVKVIRVDYTKGYIDVNYKRMC 85 (88)
T ss_pred CCCcEEEEEEEe-cCceEEEEecccCCcEEEEEeehhhhccceEee-eeEe-cCCEEEEEEEEECCCCCEEEeEeeEcc
Confidence 589999999999 99999999974 89999999965 9999999 9988 999999999999999999999999754
No 104
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=98.72 E-value=5.6e-08 Score=92.47 Aligned_cols=67 Identities=30% Similarity=0.585 Sum_probs=61.1
Q ss_pred cccccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEee
Q 000227 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1826)
Q Consensus 1462 ~~~~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~Lsl 1538 (1826)
.+.++++|+.+.|+|+++++||+||++.+ +..||+|+|++. +.|+.||.++++|+++ .++++|.|++
T Consensus 10 ~~~~~~~G~~~~g~V~~i~~~G~fV~l~~-~~~Glv~~se~~--------~~~~iGd~v~v~I~~i-~e~~~i~l~~ 76 (77)
T cd04473 10 TMEDLEVGKLYKGKVNGVAKYGVFVDLND-HVRGLIHRSNLL--------RDYEVGDEVIVQVTDI-PENGNIDLIP 76 (77)
T ss_pred chhhCCCCCEEEEEEEeEecceEEEEECC-CcEEEEEchhcc--------CcCCCCCEEEEEEEEE-CCCCcEEEEE
Confidence 46789999999999999999999999987 699999999863 4699999999999999 7999999885
No 105
>cd05688 S1_RPS1_repeat_ec3 S1_RPS1_repeat_ec3: Ribosomal protein S1 (RPS1) domain. RPS1 is a component of the small ribosomal subunit thought to be involved in the recognition and binding of mRNA's during translation initiation. The bacterial RPS1 domain architecture consists of 4-6 tandem S1 domains. In some bacteria, the tandem S1 array is located C-terminal to a 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (HMBPP reductase) domain. While RPS1 is found primarily in bacteria, proteins with tandem RPS1-like domains have been identified in plants and humans, however these lack the N-terminal HMBPP reductase domain. This CD includes S1 repeat 3 (ec3) of the Escherichia coli RPS1. Autoantibodies to double-stranded DNA from patients with systemic lupus erythematosus cross-react with the human RPS1 homolog.
Probab=98.72 E-value=3.8e-08 Score=91.06 Aligned_cols=68 Identities=29% Similarity=0.475 Sum_probs=64.4
Q ss_pred CCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEE
Q 000227 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446 (1826)
Q Consensus 1378 ~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lS 1446 (1826)
+|+++.|.|.+++++|+||+++ +++|++|.+++++.+..++.+.|++||.|+++|+++|++++++.||
T Consensus 1 ~g~~~~g~V~~v~~~g~~v~l~-~~~g~l~~~e~~~~~~~~~~~~~~~Gd~v~v~i~~vd~~~~~i~ls 68 (68)
T cd05688 1 EGDVVEGTVKSITDFGAFVDLG-GVDGLLHISDMSWGRVKHPSEVVNVGDEVEVKVLKIDKERKRISLG 68 (68)
T ss_pred CCCEEEEEEEEEEeeeEEEEEC-CeEEEEEhHHCCCccccCHhHEECCCCEEEEEEEEEECCCCEEecC
Confidence 4899999999999999999998 7999999999999988899999999999999999999999999875
No 106
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=98.71 E-value=1.8e-08 Score=127.99 Aligned_cols=86 Identities=31% Similarity=0.597 Sum_probs=80.9
Q ss_pred ccccccccCCCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEE
Q 000227 1368 KHLEKIEDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447 (1826)
Q Consensus 1368 ~~~~~~~~l~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSl 1447 (1826)
.-...+.+|++|+++.|.|+||.++|+||+||-+.+|+||+|.+|+.|+++|.+.+++||.|+++|+++|..++||.||+
T Consensus 648 ~~v~~i~dLk~Gm~leg~Vrnv~~fgafVdIgv~qDglvHis~ls~~fv~~P~~vv~vGdiV~v~V~~vD~~r~rI~Lsm 727 (780)
T COG2183 648 EGVESITDLKPGMILEGTVRNVVDFGAFVDIGVHQDGLVHISQLSDKFVKDPNEVVKVGDIVKVKVIEVDTARKRIALSM 727 (780)
T ss_pred hhhhhHhhccCCCEEEEEEEEeeeccceEEeccccceeeeHHHhhhhhcCChHHhcccCCEEEEEEEEEecccCeeeeEe
Confidence 34556779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccc
Q 000227 1448 KTSDSR 1453 (1826)
Q Consensus 1448 k~s~~~ 1453 (1826)
+.....
T Consensus 728 r~~~~~ 733 (780)
T COG2183 728 RLDEEE 733 (780)
T ss_pred eccCCc
Confidence 987654
No 107
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional
Probab=98.69 E-value=2.8e-08 Score=130.19 Aligned_cols=83 Identities=16% Similarity=0.310 Sum_probs=77.5
Q ss_pred cCCCCCEEE-EEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEeccccc
Q 000227 1375 DLSPNMIVQ-GYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1826)
Q Consensus 1375 ~l~~G~~v~-G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~~~ 1453 (1826)
+.++|+++. |.|++|.++|+||+|.++++|+||+++|+|.++.++.+.|++||.|+++|+++|+ ++||.||+|....+
T Consensus 750 ~~~vG~iy~~g~V~~I~~FGaFVeL~~g~EGLVHISeLs~~rv~~~~dv~kvGD~V~VkVi~ID~-~grI~LSlK~l~~~ 828 (891)
T PLN00207 750 VPTVGDIYRNCEIKSIAPYGAFVEIAPGREGLCHISELSSNWLAKPEDAFKVGDRIDVKLIEVND-KGQLRLSRRALLPE 828 (891)
T ss_pred CcCCCcEEECcEEEEEeccEEEEEeCCCCEEEEEhhhcCCccccCHHHhcCCCCEEEEEEEEECC-CCcEEEEEeccccC
Confidence 467999996 6999999999999999999999999999999999999999999999999999997 89999999999999
Q ss_pred ccccc
Q 000227 1454 TASQS 1458 (1826)
Q Consensus 1454 ~~~~~ 1458 (1826)
||...
T Consensus 829 Pw~~~ 833 (891)
T PLN00207 829 ANSEK 833 (891)
T ss_pred chhhh
Confidence 88643
No 108
>COG2183 Tex Transcriptional accessory protein [Transcription]
Probab=98.69 E-value=2e-08 Score=127.44 Aligned_cols=78 Identities=33% Similarity=0.660 Sum_probs=74.8
Q ss_pred cccccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeec
Q 000227 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1826)
Q Consensus 1462 ~~~~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~ 1540 (1826)
.+.++++|+++.|+|+++.+||+||.|+ .+.+||+|+|++++.++.++.+.+++||.|+++|+++|..++||.|||+.
T Consensus 652 ~i~dLk~Gm~leg~Vrnv~~fgafVdIg-v~qDglvHis~ls~~fv~~P~~vv~vGdiV~v~V~~vD~~r~rI~Lsmr~ 729 (780)
T COG2183 652 SITDLKPGMILEGTVRNVVDFGAFVDIG-VHQDGLVHISQLSDKFVKDPNEVVKVGDIVKVKVIEVDTARKRIALSMRL 729 (780)
T ss_pred hHhhccCCCEEEEEEEEeeeccceEEec-cccceeeeHHHhhhhhcCChHHhcccCCEEEEEEEEEecccCeeeeEeec
Confidence 4669999999999999999999999996 48999999999999999999999999999999999999999999999987
No 109
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.68 E-value=5.3e-08 Score=94.82 Aligned_cols=75 Identities=20% Similarity=0.143 Sum_probs=67.5
Q ss_pred CCCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCC----CccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEeccc
Q 000227 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSD----GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1826)
Q Consensus 1376 l~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd----~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~ 1451 (1826)
.++|++|.|.|+++.++|+||.++.+.+|++|++++++ .+..+..+.|++||.+.|+|++++++ +++.||++...
T Consensus 4 p~~GdiV~g~V~~i~~~g~~v~i~~~~~G~l~~se~~~~~~~~~~~~~~~~l~vGd~i~~~V~~~~~~-~~i~LS~~~~~ 82 (86)
T cd05789 4 PEVGDVVIGRVTEVGFKRWKVDINSPYDAVLPLSEVNLPRTDEDELNMRSYLDEGDLIVAEVQSVDSD-GSVSLHTRSLK 82 (86)
T ss_pred CCCCCEEEEEEEEECCCEEEEECCCCeEEEEEHHHccCCCCccchHHHHhhCCCCCEEEEEEEEECCC-CCEEEEeCccc
Confidence 46899999999999999999999999999999999996 45566777899999999999999975 99999998753
No 110
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=98.65 E-value=1.3e-07 Score=105.82 Aligned_cols=94 Identities=20% Similarity=0.427 Sum_probs=78.1
Q ss_pred EEEeCCCCeEEEEEeccccccccccccccccccCCCCEEEEEEEEEeeceEEEEEec---------CceEEEEEccccCc
Q 000227 1434 LSVEPLSKRVEVTLKTSDSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIEN---------TNLVGLCHVSELSE 1504 (1826)
Q Consensus 1434 l~vd~e~~rI~lSlk~s~~~~~~~~~~~~~~~~~~G~iv~G~V~~v~~~GvFV~l~~---------~~v~Gl~h~sels~ 1504 (1826)
+++|.++++|.+. ||.. ....+++|++|.|+|+++.++|+||+|.. .++.|++|++++++
T Consensus 41 ~~id~~~~~Isv~-------P~~~----~~~~~~~GdiV~GkV~~i~~~g~~V~I~~~~~~~~~l~~~~~G~l~~s~i~~ 109 (189)
T PRK09521 41 VFIDDINRKISVI-------PFKK----TPPLLKKGDIVYGRVVDVKEQRALVRIVSIEGSERELATSKLAYIHISQVSD 109 (189)
T ss_pred EEEcCCCCEEEEe-------cCcC----CCCCCCCCCEEEEEEEEEcCCeEEEEEEEecccccccCCCceeeEEhhHcCh
Confidence 4557777777662 3322 13467899999999999999999999952 25889999999999
Q ss_pred ccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeecc
Q 000227 1505 DHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1826)
Q Consensus 1505 ~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s 1541 (1826)
....++.+.|++||.|+|+|++++ +++.||+|..
T Consensus 110 ~~~~~~~~~~~~GD~V~akV~~i~---~~i~LS~k~~ 143 (189)
T PRK09521 110 GYVESLTDAFKIGDIVRAKVISYT---DPLQLSTKGK 143 (189)
T ss_pred hhhhhHHhccCCCCEEEEEEEecC---CcEEEEEecC
Confidence 988889999999999999999998 7899999864
No 111
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.64 E-value=8e-08 Score=89.69 Aligned_cols=63 Identities=27% Similarity=0.468 Sum_probs=57.8
Q ss_pred CCEEEEEEEEEeeceEEEEEecCceEEEEEccccCccc--ccCccccCCCCCEEEEEEEEEeCCCC
Q 000227 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDH--VDNIETIYRAGEKVKVKILKVDKEKR 1532 (1826)
Q Consensus 1469 G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~--~~~~~~~~~~Gd~Vk~kVl~id~e~~ 1532 (1826)
|++|.|+|+++.++|+||+|.+ +++|++|++++++++ ..++.+.|++||.|+|+|+++|.++.
T Consensus 1 G~iV~g~V~~i~~~gi~v~l~~-~i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i~~kVl~~d~~~~ 65 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQLAD-NVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVIGGHDAKT 65 (70)
T ss_pred CCEEEEEEEEEECCcEEEEeCC-CcEEEEEHHHhccccccccChhHhCCCCCEEEEEEEEEeCccc
Confidence 7899999999999999999986 899999999999884 77788899999999999999997654
No 112
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=4.2e-08 Score=122.72 Aligned_cols=104 Identities=25% Similarity=0.534 Sum_probs=85.0
Q ss_pred EEEeCCCCeEEEEEecccccccc-ccccccccccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccc
Q 000227 1434 LSVEPLSKRVEVTLKTSDSRTAS-QSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIET 1512 (1826)
Q Consensus 1434 l~vd~e~~rI~lSlk~s~~~~~~-~~~~~~~~~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~ 1512 (1826)
+.++ +++.|.++-......... ........++.+|+++.|+|+++.+||+||.|.+ +-.||||+|++++.++++..+
T Consensus 585 Idie-ddGtv~i~~s~~~~~~~ak~~I~~i~~e~evg~iy~G~V~ri~~fGaFv~l~~-gkdgl~hiS~~~~~rv~kv~d 662 (692)
T COG1185 585 IDIE-DDGTVKIAASDGESAKKAKERIEAITREVEVGEVYEGTVVRIVDFGAFVELLP-GKDGLVHISQLAKERVEKVED 662 (692)
T ss_pred EEec-CCCcEEEEecchHHHHHHHHHHHHHHhhcccccEEEEEEEEEeecceEEEecC-CcceeEEehhhhhhhhhcccc
Confidence 4555 677777766553321101 1111124789999999999999999999999987 899999999999999999999
Q ss_pred cCCCCCEEEEEEEEEeCCCCeEEEeeec
Q 000227 1513 IYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1826)
Q Consensus 1513 ~~~~Gd~Vk~kVl~id~e~~rI~LslK~ 1540 (1826)
.+++||.|+++|+.+| +++|+.|++|.
T Consensus 663 vlk~Gd~v~Vkv~~iD-~~Gri~ls~~~ 689 (692)
T COG1185 663 VLKEGDEVKVKVIEID-KQGRIRLSIKA 689 (692)
T ss_pred eeecCceEEEEEeeec-ccCCccceehh
Confidence 9999999999999999 68999999986
No 113
>cd04471 S1_RNase_R S1_RNase_R: RNase R C-terminal S1 domain. RNase R is a processive 3' to 5' exoribonuclease, which is a homolog of RNase II. RNase R degrades RNA with secondary structure having a 3' overhang of at least 7 nucleotides. RNase R and PNPase play an important role in the degradation of RNA with extensive secondary structure, such as rRNA, tRNA, and certain mRNA which contains repetitive extragenic palindromic sequences. The C-terminal S1 domain binds ssRNA.
Probab=98.62 E-value=1.5e-07 Score=90.80 Aligned_cols=70 Identities=30% Similarity=0.448 Sum_probs=62.6
Q ss_pred CCCEEEEEEEEEecceEEEEeCC-CeEEEEEccccCCCccC-----------CCCccCCCCcEEEEEEEEEeCCCCeEEE
Q 000227 1378 PNMIVQGYVKNVTSKGCFIMLSR-KLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445 (1826)
Q Consensus 1378 ~G~~v~G~V~~v~~~GvFV~l~~-~v~g~v~iselsd~~v~-----------~~~~~f~vGq~V~~kVl~vd~e~~rI~l 1445 (1826)
+|+++.|.|++++++|+||+|++ +++|++|++++++.+.. .+...|++||.|+++|+++|.+++++.+
T Consensus 1 ~g~~~~g~V~~v~~~G~fv~l~~~~~~G~v~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~gd~v~v~v~~vd~~~~~i~~ 80 (83)
T cd04471 1 VGEEFDGVISGVTSFGLFVELDNLTVEGLVHVSTLGDDYYEFDEENHALVGERTGKVFRLGDKVKVRVVRVDLDRRKIDF 80 (83)
T ss_pred CCCEEEEEEEeEEeeeEEEEecCCCEEEEEEEEecCCCcEEEcccceEEEeccCCCEEcCCCEEEEEEEEeccccCEEEE
Confidence 38899999999999999999998 89999999999976421 3457899999999999999999999999
Q ss_pred EE
Q 000227 1446 TL 1447 (1826)
Q Consensus 1446 Sl 1447 (1826)
++
T Consensus 81 ~l 82 (83)
T cd04471 81 EL 82 (83)
T ss_pred EE
Confidence 86
No 114
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.62 E-value=1.2e-07 Score=91.32 Aligned_cols=74 Identities=22% Similarity=0.273 Sum_probs=68.5
Q ss_pred cCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeecc
Q 000227 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1826)
Q Consensus 1466 ~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s 1541 (1826)
.++|++|.|+|+++.+.|++|.+.. ...|++|.++++.....++.+.|++||.+.|+|+++|.+ +++.||++..
T Consensus 4 p~~GdiV~G~V~~v~~~~~~V~i~~-~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~~~~~~-~~i~LS~~~~ 77 (82)
T cd04454 4 PDVGDIVIGIVTEVNSRFWKVDILS-RGTARLEDSSATEKDKKEIRKSLQPGDLILAKVISLGDD-MNVLLTTADN 77 (82)
T ss_pred CCCCCEEEEEEEEEcCCEEEEEeCC-CceEEeechhccCcchHHHHhcCCCCCEEEEEEEEeCCC-CCEEEEECCC
Confidence 3789999999999999999999965 899999999999888888889999999999999999976 8999999874
No 115
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=98.60 E-value=9.6e-08 Score=126.23 Aligned_cols=76 Identities=36% Similarity=0.688 Sum_probs=71.7
Q ss_pred cccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeecc
Q 000227 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1826)
Q Consensus 1464 ~~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s 1541 (1826)
.++++|++|.|+|++|.+||+||+|.+ +.+||+|+|+++++++.++.+.|++||.|+++|+++|.+ +||.||+|..
T Consensus 617 ~~~~vG~v~~G~V~~I~~fGafVei~~-~~~GllhiSels~~~v~~~~~v~kvGD~V~VkV~~iD~~-grI~LS~k~~ 692 (693)
T PRK11824 617 AEPEVGEIYEGKVVRIVDFGAFVEILP-GKDGLVHISEIADERVEKVEDVLKEGDEVKVKVLEIDKR-GRIRLSRKAV 692 (693)
T ss_pred ccCcCCeEEEEEEEEEECCeEEEEECC-CCEEEEEeeeccCccccCccceeCCCCEEEEEEEEECCC-CcEEEEEEec
Confidence 468999999999999999999999986 799999999999999999999999999999999999977 9999999863
No 116
>cd05702 S1_Rrp5_repeat_hs11_sc8 S1_Rrp5_repeat_hs11_sc8: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 11 (hs11) and S. cerevisiae S1 repeat 8 (sc8). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.59 E-value=1.4e-07 Score=88.08 Aligned_cols=62 Identities=21% Similarity=0.360 Sum_probs=58.3
Q ss_pred CCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCc--cCCCCccCCCCcEEEEEEEEEeCCC
Q 000227 1379 NMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--VESPEKEFPIGKLVAGRVLSVEPLS 1440 (1826)
Q Consensus 1379 G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~--v~~~~~~f~vGq~V~~kVl~vd~e~ 1440 (1826)
|++|.|.|+++.++|+||.|+.+++|++|++++++.| ..++.+.|++||.|+|+|+++|.++
T Consensus 1 G~iV~g~V~~i~~~gi~v~l~~~i~g~i~~~~i~~~~~~~~~~~~~~~~Gd~i~~kVl~~d~~~ 64 (70)
T cd05702 1 GDLVKAKVKSVKPTQLNVQLADNVHGRIHVSEVFDEWPDGKNPLSKFKIGQKIKARVIGGHDAK 64 (70)
T ss_pred CCEEEEEEEEEECCcEEEEeCCCcEEEEEHHHhccccccccChhHhCCCCCEEEEEEEEEeCcc
Confidence 7899999999999999999999999999999999986 7889899999999999999999654
No 117
>cd04454 S1_Rrp4_like S1_Rrp4_like: Rrp4-like, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein, and Rrp40 and Csl4 proteins, also represented in this group, are subunits of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=98.58 E-value=1.9e-07 Score=89.98 Aligned_cols=74 Identities=20% Similarity=0.178 Sum_probs=69.4
Q ss_pred CCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEeccc
Q 000227 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~ 1451 (1826)
++|++|.|+|+++.+.|++|+++...+|++|+++++..+.+++.+.|++|+.+.|+|+++|.+ +++.||++...
T Consensus 5 ~~GdiV~G~V~~v~~~~~~V~i~~~~~g~l~~~~~~~~~~~~~~~~~~~GD~i~~~V~~~~~~-~~i~LS~~~~~ 78 (82)
T cd04454 5 DVGDIVIGIVTEVNSRFWKVDILSRGTARLEDSSATEKDKKEIRKSLQPGDLILAKVISLGDD-MNVLLTTADNE 78 (82)
T ss_pred CCCCEEEEEEEEEcCCEEEEEeCCCceEEeechhccCcchHHHHhcCCCCCEEEEEEEEeCCC-CCEEEEECCCC
Confidence 689999999999999999999999999999999999988888999999999999999999976 99999998743
No 118
>cd04453 S1_RNase_E S1_RNase_E: RNase E and RNase G, S1-like RNA-binding domain. RNase E is an essential endoribonuclease in the processing and degradation of RNA. In addition to its role in mRNA degradation, RNase E has also been implicated in the processing of rRNA, and the maturation of tRNA, 10Sa RNA and the M1 precursor of RNase P. RNase E associates with PNPase (3' to 5' exonuclease), Rhl B (DEAD-box RNA helicase) and enolase (glycolytic enzyme) to form the RNA degradosome. RNase E tends to cut mRNA within single-stranded regions that are rich in A/U nucleotides. The N-terminal region of RNase E contains the catalytic site. Within the conserved N-terminal domain of RNAse E and RNase G, there is an S1-like subdomain, which is an ancient single-stranded RNA-binding domain. S1 domain is an RNA-binding module originally identified in the ribosomal protein S1. The S1 domain is required for RNA cleavage by RNase E. RNase G is paralogous to RNase E with an N-terminal catalytic domain th
Probab=98.57 E-value=2.1e-07 Score=90.69 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=65.4
Q ss_pred cCCCCCEEEEEEEEEecc--eEEEEeCCCeEEEEEccccCC---CccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEec
Q 000227 1375 DLSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSD---GYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1826)
Q Consensus 1375 ~l~~G~~v~G~V~~v~~~--GvFV~l~~~v~g~v~iselsd---~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~ 1449 (1826)
.+++|+++.|.|+++.++ |+||+|+++.+||+|++++|| ..+.++.+.|++||.|.++|+......+.-.||.+-
T Consensus 4 ~~~~G~iy~g~V~~i~~~~~GaFV~l~~g~~Gllh~seis~~~~~~v~~~~~~~~~Gd~v~VqV~~~~~~~K~~~lt~~~ 83 (88)
T cd04453 4 EPIVGNIYLGRVKKIVPGLQAAFVDIGLGKNGFLHLSDILPAYFKKHKKIAKLLKEGQEILVQVVKEPIGTKGPRLTTNI 83 (88)
T ss_pred cCCCCCEEEEEEEEeccCCcEEEEEeCCCCEEEEEhHHcCchhccccCCHHHcCCCCCEEEEEEEEecCCCCCceEEEEE
Confidence 357999999999999996 999999999999999999999 567788889999999999999987666666665543
No 119
>PRK03987 translation initiation factor IF-2 subunit alpha; Validated
Probab=98.57 E-value=1.8e-07 Score=108.98 Aligned_cols=77 Identities=23% Similarity=0.440 Sum_probs=72.5
Q ss_pred CCCCEEEEEEEEEecceEEEEeCC--CeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEeccccc
Q 000227 1377 SPNMIVQGYVKNVTSKGCFIMLSR--KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~~GvFV~l~~--~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~~~ 1453 (1826)
++|++|.|.|+++.++|+||+|.. +++|++|++++++.+..++.+.|++||.|.++|+++|+++++|.||+|....+
T Consensus 7 ~~GdiV~G~V~~I~~~G~fV~L~e~~gieGlI~iSEls~~~i~~i~~~~kvGd~V~vkVi~VD~~k~~I~LSlK~v~~~ 85 (262)
T PRK03987 7 EEGELVVGTVKEVKDFGAFVTLDEYPGKEGFIHISEVASGWVKNIRDHVKEGQKVVCKVIRVDPRKGHIDLSLKRVNEH 85 (262)
T ss_pred CCCCEEEEEEEEEECCEEEEEECCCCCcEEEEEHHHcCcccccCHHHhCCCCCEEEEEEEEEecccCeEEEEEEecccc
Confidence 689999999999999999999975 79999999999999999999999999999999999999999999999976654
No 120
>cd04473 S1_RecJ_like S1_RecJ_like: The S1 domain of the archaea-specific RecJ-like exonuclease. The function of this family is not fully understood. In Escherichia coli, RecJ degrades single-stranded DNA in the 5'-3' direction and participates in homologous recombination and mismatch repair.
Probab=98.56 E-value=3.7e-07 Score=86.83 Aligned_cols=67 Identities=25% Similarity=0.442 Sum_probs=61.4
Q ss_pred ccccCCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEe
Q 000227 755 DASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSL 830 (1826)
Q Consensus 755 ~~~~~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSl 830 (1826)
.+.+++.|+.+.|.|++++++|+||++.+++.||+|.+++. ..|++||.++|+|.++ .+++|+.|++
T Consensus 10 ~~~~~~~G~~~~g~V~~i~~~G~fV~l~~~~~Glv~~se~~--------~~~~iGd~v~v~I~~i-~e~~~i~l~~ 76 (77)
T cd04473 10 TMEDLEVGKLYKGKVNGVAKYGVFVDLNDHVRGLIHRSNLL--------RDYEVGDEVIVQVTDI-PENGNIDLIP 76 (77)
T ss_pred chhhCCCCCEEEEEEEeEecceEEEEECCCcEEEEEchhcc--------CcCCCCCEEEEEEEEE-CCCCcEEEEE
Confidence 45678999999999999999999999999999999999863 4699999999999999 8899999885
No 121
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase. Sohlberg, et al. present characterization of two proteins from Streptomyces coelicolor. The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. Reference 2 showed that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase.
Probab=98.56 E-value=1.1e-07 Score=122.33 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=66.0
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcC----cccccCcccCCCCCCEEEEEEEEeeCCCCeEEEE
Q 000227 758 HIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAV----DGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1826)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~----~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LS 829 (1826)
++++|+++.|.|++|++||+||++.+|+.||+|.|+++ +.++.++.+.|++||.|+|+|+++|. ++|+.|+
T Consensus 644 ~~~vG~i~~GkV~~I~dfGaFVel~~G~eGLvHISeisdls~~~rv~~~~dv~kvGd~V~VKVl~ID~-~gKI~L~ 718 (719)
T TIGR02696 644 MPEVGERFLGTVVKTTAFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLSVGQKIQVEIADIDD-RGKLSLV 718 (719)
T ss_pred cCCCCCEEEEEEEEEECceEEEEecCCceEEEEhhhccccccccCcCCHHHcCCCCCEEEEEEEEECC-CCCeeec
Confidence 47899999999999999999999999999999999995 47889999999999999999999994 7899886
No 122
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=6e-08 Score=108.24 Aligned_cols=77 Identities=25% Similarity=0.425 Sum_probs=73.0
Q ss_pred CCCCEEEEEEEEEecceEEEEeC--CCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEeccccc
Q 000227 1377 SPNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~~GvFV~l~--~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~~~ 1453 (1826)
.+|++|-|+|++|.++|+||.|. +|++||+|+|+++..|+++.+++.++||.|-|+||+||+..+.|.||||....+
T Consensus 10 eeGEiVv~tV~~V~~~GAyv~L~EY~g~Eg~ihiSEvas~wVknIrd~vkegqkvV~kVlrVd~~rg~IDLSlkrV~~~ 88 (269)
T COG1093 10 EEGEIVVGTVKQVADYGAYVELDEYPGKEGFIHISEVASGWVKNIRDYVKEGQKVVAKVLRVDPKRGHIDLSLKRVTEH 88 (269)
T ss_pred CCCcEEEEEEEEeeccccEEEeeccCCeeeeEEHHHHHHHHHHHHHHHhhcCCeEEEEEEEEcCCCCeEeeehhhCCHH
Confidence 58999999999999999999997 489999999999999999999999999999999999999999999999987654
No 123
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.
Probab=98.52 E-value=2e-07 Score=84.85 Aligned_cols=65 Identities=34% Similarity=0.581 Sum_probs=61.2
Q ss_pred EEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEE
Q 000227 1382 VQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446 (1826)
Q Consensus 1382 v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lS 1446 (1826)
+.|+|.++.++|+||+++.+.+|++|.+++++.+..++.+.|++||.|+++|+++|++++++.||
T Consensus 1 v~g~V~~v~~~g~~v~l~~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~v~~~d~~~~~i~ls 65 (65)
T cd00164 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65 (65)
T ss_pred CEEEEEEEEeeeEEEEecCCCEEEEEHHHCCCccccCHhhEeCCCCEEEEEEEEEcCCcCEEecC
Confidence 47999999999999999999999999999999988888899999999999999999989998875
No 124
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.52 E-value=9.2e-07 Score=108.50 Aligned_cols=143 Identities=18% Similarity=0.229 Sum_probs=102.8
Q ss_pred HHhcccCCCCCHHHHHHHHHhCCC-c---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhh-------------
Q 000227 1661 ERLLEKDAPRTPDEFERLVRSSPN-S---SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE------------- 1723 (1826)
Q Consensus 1661 ~~~~~~~~p~s~~~fer~l~~~p~-s---s~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e------------- 1723 (1826)
.-+.+++.-.++..||+++..+-. - ..+|+.|+..||+..+++.|+++++||. .+|.+.+-+
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~-~vP~~~~~~~yd~~~pvQ~rlh 474 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT-HVPTNPELEYYDNSEPVQARLH 474 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh-cCCCchhhhhhcCCCcHHHHHH
Confidence 333455566777778888766522 2 4678888888888888888888888885 355553311
Q ss_pred -HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc--CCCHHHHHH
Q 000227 1724 -KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKF--KHSCKVIIE 1799 (1826)
Q Consensus 1724 -~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~--~~~~~~w~~ 1799 (1826)
.+.||.-|+.||..+| +.++++.+|+|.+.. --.+.|-+.|+-+++...-++++.++|++++..| |..-.+|..
T Consensus 475 rSlkiWs~y~DleEs~g--tfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~t 552 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLG--TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNT 552 (835)
T ss_pred HhHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHH
Confidence 1267888888888888 678888888888843 4567778888888888888888888888888877 666788888
Q ss_pred HHHHHHh
Q 000227 1800 LLSFHFT 1806 (1826)
Q Consensus 1800 ~~~~~~~ 1806 (1826)
|..-.++
T Consensus 553 YLtkfi~ 559 (835)
T KOG2047|consen 553 YLTKFIK 559 (835)
T ss_pred HHHHHHH
Confidence 8766554
No 125
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.50 E-value=5.7e-07 Score=110.28 Aligned_cols=121 Identities=17% Similarity=0.264 Sum_probs=97.9
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHH--------------HHH
Q 000227 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV--------------KVF 1750 (1826)
Q Consensus 1685 ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~--------------~vf 1750 (1826)
-..||..|++|++.+++++.||.|+++|.+ .||....+-.+||.+|..+|....+. ..+++ ..|
T Consensus 386 ~~~Lw~~faklYe~~~~l~~aRvifeka~~-V~y~~v~dLa~vw~~waemElrh~~~-~~Al~lm~~A~~vP~~~~~~~y 463 (835)
T KOG2047|consen 386 PGTLWVEFAKLYENNGDLDDARVIFEKATK-VPYKTVEDLAEVWCAWAEMELRHENF-EAALKLMRRATHVPTNPELEYY 463 (835)
T ss_pred hhhHHHHHHHHHHhcCcHHHHHHHHHHhhc-CCccchHHHHHHHHHHHHHHHhhhhH-HHHHHHHHhhhcCCCchhhhhh
Confidence 457999999999999999999999999975 78888778889999999999876552 22221 222
Q ss_pred HHHH----hcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 000227 1751 QRAL----QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTS 1807 (1826)
Q Consensus 1751 ~~a~----~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~ 1807 (1826)
+..- ....+.++|..|+.+++..|-++..+.+|++++..==..|.+-++||.||..+
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh 524 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH 524 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 2111 12247899999999999999999999999999987766799999999997654
No 126
>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.
Probab=98.48 E-value=2.7e-07 Score=84.01 Aligned_cols=65 Identities=35% Similarity=0.527 Sum_probs=60.4
Q ss_pred EEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEE
Q 000227 765 VHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLS 829 (1826)
Q Consensus 765 ~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LS 829 (1826)
+.|+|.++.++|+||++.+++.|++|.+++++.+..++.+.|++||.|+|+|+++|++++++.||
T Consensus 1 v~g~V~~v~~~g~~v~l~~~~~g~~~~~~~~~~~~~~~~~~~~~G~~v~~~v~~~d~~~~~i~ls 65 (65)
T cd00164 1 VTGKVVSITKFGVFVELEDGVEGLVHISELSDKFVKDPSEVFKVGDEVEVKVLEVDPEKGRISLS 65 (65)
T ss_pred CEEEEEEEEeeeEEEEecCCCEEEEEHHHCCCccccCHhhEeCCCCEEEEEEEEEcCCcCEEecC
Confidence 36899999999999999999999999999998877788889999999999999999999999875
No 127
>cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. RpoE is subunit E of archaeal RNA polymerase. Archaeal cells contain a single RNA polymerase made up of 12 subunits, which are homologous to the 12 subunits (RPB1-12) of eukaryotic RNA polymerase II. RpoE is homologous to Rpa43 of eukaryotic RNA polymerase I, RPB7 of eukaryotic RNA polymerase II, and Rpc25 of eukaryotic RNA polymerase III. RpoE is composed of two domains, the N-terminal RNP (ribonucleoprotein) domain and the C-terminal S1 domain. This S1 domain binds ssRNA and ssDNA. This family is classified based on the C-terminal S1 domain. The function of RpoE is not fully understood. In eukaryotes, RPB7 and RPB4 form a heterodimer that reversibly associates with the RNA polymerase II core.
Probab=98.46 E-value=5.4e-07 Score=90.16 Aligned_cols=74 Identities=24% Similarity=0.535 Sum_probs=64.0
Q ss_pred CEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccC-----------ccccCCCCCEEEEEEEEEeCCC-----Ce
Q 000227 1470 DIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDN-----------IETIYRAGEKVKVKILKVDKEK-----RR 1533 (1826)
Q Consensus 1470 ~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~-----------~~~~~~~Gd~Vk~kVl~id~e~-----~r 1533 (1826)
+++.|+|+++.++|+||+|. +++|++|++++++++... ....|++||.|+++|.++|.++ .+
T Consensus 1 ~vv~g~V~~i~~~GifV~l~--~v~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkI~~vd~~~~~~~~~~ 78 (99)
T cd04460 1 EVVEGEVVEVVDFGAFVRIG--PVDGLLHISQIMDDYISYDPKNKRLIGEETKRVLKVGDVVRARIVAVSLKERRPRESK 78 (99)
T ss_pred CEEEEEEEEEEeccEEEEEc--CeEEEEEEEEccCCceEechhheeecccCcCCEECCCCEEEEEEEEEeHHHCcCCCce
Confidence 47899999999999999996 499999999998876543 2478999999999999999774 58
Q ss_pred EEEeeeccccCC
Q 000227 1534 ISLGMKSSYFKN 1545 (1826)
Q Consensus 1534 I~LslK~s~~~~ 1545 (1826)
|.||+|..++..
T Consensus 79 i~ls~k~~~~g~ 90 (99)
T cd04460 79 IGLTMRQPGLGK 90 (99)
T ss_pred EEEEEecCCCCc
Confidence 999999987744
No 128
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=98.39 E-value=8.3e-07 Score=117.49 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=72.1
Q ss_pred ccCCCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEecc
Q 000227 1374 EDLSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450 (1826)
Q Consensus 1374 ~~l~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s 1450 (1826)
.++++|+++.|.|+++.++|+||+|.++.+|++|+++++|.++.++.+.|++||.|+++|+++|++ +++.||+|..
T Consensus 617 ~~~~vG~v~~G~V~~I~~fGafVei~~~~~GllhiSels~~~v~~~~~v~kvGD~V~VkV~~iD~~-grI~LS~k~~ 692 (693)
T PRK11824 617 AEPEVGEIYEGKVVRIVDFGAFVEILPGKDGLVHISEIADERVEKVEDVLKEGDEVKVKVLEIDKR-GRIRLSRKAV 692 (693)
T ss_pred ccCcCCeEEEEEEEEEECCeEEEEECCCCEEEEEeeeccCccccCccceeCCCCEEEEEEEEECCC-CcEEEEEEec
Confidence 357899999999999999999999999999999999999999999999999999999999999986 9999999864
No 129
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=98.38 E-value=2.1e-06 Score=96.26 Aligned_cols=74 Identities=30% Similarity=0.420 Sum_probs=67.6
Q ss_pred ccCCCCCEEEEEEEEEecceEEEEeC----------CCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeE
Q 000227 1374 EDLSPNMIVQGYVKNVTSKGCFIMLS----------RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRV 1443 (1826)
Q Consensus 1374 ~~l~~G~~v~G~V~~v~~~GvFV~l~----------~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI 1443 (1826)
..+++|++|.|+|+++.++|+||+|+ .+++|++|++++++.+..++.+.|++||.|.++|++++ +++
T Consensus 60 ~~~~~GdiV~GkV~~i~~~g~~V~I~~~~~~~~~l~~~~~G~l~~s~i~~~~~~~~~~~~~~GD~V~akV~~i~---~~i 136 (189)
T PRK09521 60 PLLKKGDIVYGRVVDVKEQRALVRIVSIEGSERELATSKLAYIHISQVSDGYVESLTDAFKIGDIVRAKVISYT---DPL 136 (189)
T ss_pred CCCCCCCEEEEEEEEEcCCeEEEEEEEecccccccCCCceeeEEhhHcChhhhhhHHhccCCCCEEEEEEEecC---CcE
Confidence 34689999999999999999999985 46899999999999988899999999999999999998 789
Q ss_pred EEEEecc
Q 000227 1444 EVTLKTS 1450 (1826)
Q Consensus 1444 ~lSlk~s 1450 (1826)
.||+|..
T Consensus 137 ~LS~k~~ 143 (189)
T PRK09521 137 QLSTKGK 143 (189)
T ss_pred EEEEecC
Confidence 9999863
No 130
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=98.36 E-value=5.1e-07 Score=119.13 Aligned_cols=71 Identities=37% Similarity=0.714 Sum_probs=66.2
Q ss_pred cccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEE
Q 000227 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1536 (1826)
Q Consensus 1464 ~~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~L 1536 (1826)
..+++|++|.|+|++|.+||+||+|.+ +++||+|+|++++.++.++.+.|++||.|+|+|+++|. ++||+|
T Consensus 614 ~~~~~G~i~~G~V~~I~~~GafVei~~-g~~GllHiSei~~~~v~~~~~~~kvGD~V~VkVi~id~-~gki~L 684 (684)
T TIGR03591 614 AEPEVGKIYEGKVVRIMDFGAFVEILP-GKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDK-QGRIKL 684 (684)
T ss_pred cccccCcEEEEEEEEEeCCEEEEEECC-CcEEEEEHHHcCCCcccChhhccCCCCEEEEEEEEECC-CCCccC
Confidence 467899999999999999999999986 79999999999999999999999999999999999996 788764
No 131
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=98.22 E-value=7.1e-06 Score=94.92 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=69.3
Q ss_pred ccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccc----cCccccCCCCCEEEEEEEEEeCCCCeEEEeeec
Q 000227 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV----DNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1826)
Q Consensus 1465 ~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~----~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~ 1540 (1826)
-.++||+|.|+|+++.++|+||.|.. ...|++|++++++.++ .+....|++||.|+|+|++++++ +++.||+|.
T Consensus 60 ~P~vGDiViG~V~~i~~~~~~vdI~~-~~~g~L~~s~i~~~~~~~d~~~~~~~~~~GDlV~akV~~i~~~-~~~~LS~k~ 137 (235)
T PRK04163 60 IPKVGDLVIGKVTDVTFSGWEVDINS-PYKAYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAKVKDVDRT-RDVVLTLKG 137 (235)
T ss_pred cCCCCCEEEEEEEEEeCceEEEEeCC-CceeEEEHHHcCCCccccchhhhHhhCCCCCEEEEEEEEECCC-CcEEEEEcC
Confidence 34799999999999999999999975 7999999999999876 67888999999999999999954 459999998
Q ss_pred cccC
Q 000227 1541 SYFK 1544 (1826)
Q Consensus 1541 s~~~ 1544 (1826)
..+.
T Consensus 138 ~~lG 141 (235)
T PRK04163 138 KGLG 141 (235)
T ss_pred CCCC
Confidence 7663
No 132
>cd04460 S1_RpoE S1_RpoE: RpoE, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. RpoE is subunit E of archaeal RNA polymerase. Archaeal cells contain a single RNA polymerase made up of 12 subunits, which are homologous to the 12 subunits (RPB1-12) of eukaryotic RNA polymerase II. RpoE is homologous to Rpa43 of eukaryotic RNA polymerase I, RPB7 of eukaryotic RNA polymerase II, and Rpc25 of eukaryotic RNA polymerase III. RpoE is composed of two domains, the N-terminal RNP (ribonucleoprotein) domain and the C-terminal S1 domain. This S1 domain binds ssRNA and ssDNA. This family is classified based on the C-terminal S1 domain. The function of RpoE is not fully understood. In eukaryotes, RPB7 and RPB4 form a heterodimer that reversibly associates with the RNA polymerase II core.
Probab=98.22 E-value=4.7e-06 Score=83.45 Aligned_cols=76 Identities=20% Similarity=0.438 Sum_probs=65.6
Q ss_pred CEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccC-----------CCCccCCCCcEEEEEEEEEeCCC-----CeE
Q 000227 1380 MIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVEPLS-----KRV 1443 (1826)
Q Consensus 1380 ~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~-----------~~~~~f~vGq~V~~kVl~vd~e~-----~rI 1443 (1826)
+++.|.|++++++|+||+|. +++|++|++++++.+.. ++...|++||.|+++|+++|.+. +++
T Consensus 1 ~vv~g~V~~i~~~GifV~l~-~v~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Gd~v~vkI~~vd~~~~~~~~~~i 79 (99)
T cd04460 1 EVVEGEVVEVVDFGAFVRIG-PVDGLLHISQIMDDYISYDPKNKRLIGEETKRVLKVGDVVRARIVAVSLKERRPRESKI 79 (99)
T ss_pred CEEEEEEEEEEeccEEEEEc-CeEEEEEEEEccCCceEechhheeecccCcCCEECCCCEEEEEEEEEeHHHCcCCCceE
Confidence 46899999999999999998 59999999999987653 24578999999999999999774 589
Q ss_pred EEEEecccccccc
Q 000227 1444 EVTLKTSDSRTAS 1456 (1826)
Q Consensus 1444 ~lSlk~s~~~~~~ 1456 (1826)
.||+|.....++.
T Consensus 80 ~ls~k~~~~g~~~ 92 (99)
T cd04460 80 GLTMRQPGLGKLE 92 (99)
T ss_pred EEEEecCCCCcHH
Confidence 9999998877643
No 133
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional
Probab=98.19 E-value=6.8e-06 Score=95.07 Aligned_cols=73 Identities=25% Similarity=0.275 Sum_probs=67.3
Q ss_pred CCCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCcc----CCCCccCCCCcEEEEEEEEEeCCCCeEEEEEec
Q 000227 1376 LSPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYV----ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKT 1449 (1826)
Q Consensus 1376 l~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v----~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~ 1449 (1826)
.++||+|.|+|++++++|+||+|+...+|++|++++++.++ .++.+.|++||+|.|+|+++++ .+.+.||+|.
T Consensus 61 P~vGDiViG~V~~i~~~~~~vdI~~~~~g~L~~s~i~~~~~~~d~~~~~~~~~~GDlV~akV~~i~~-~~~~~LS~k~ 137 (235)
T PRK04163 61 PKVGDLVIGKVTDVTFSGWEVDINSPYKAYLPVSEVLGRPVNVEGTDLRKYLDIGDYIIAKVKDVDR-TRDVVLTLKG 137 (235)
T ss_pred CCCCCEEEEEEEEEeCceEEEEeCCCceeEEEHHHcCCCccccchhhhHhhCCCCCEEEEEEEEECC-CCcEEEEEcC
Confidence 37999999999999999999999999999999999999987 7888999999999999999996 4569999965
No 134
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.18 E-value=1.8e-05 Score=105.55 Aligned_cols=138 Identities=14% Similarity=0.087 Sum_probs=123.9
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHH
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e 1744 (1826)
.++..++...|++++..+|+....|+.++...+.++++++|...+++|++.-+.. ..+|..+..+-...| +.+
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g--~~~ 416 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED-----PDIYYHRAQLHFIKG--EFA 416 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcC--CHH
Confidence 4556778999999999999999999999999999999999999999998764433 348999999999999 889
Q ss_pred HHHHHHHHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1745 AVVKVFQRALQY-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1745 ~~~~vf~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
.|...|++|++. ++....|..++.+|.+.|++++|...|+++++.+|.++.+|..++..+..+|+
T Consensus 417 ~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 417 QAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred HHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 999999999964 56788899999999999999999999999999999999999999999988774
No 135
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=98.17 E-value=2.4e-06 Score=112.83 Aligned_cols=71 Identities=23% Similarity=0.423 Sum_probs=66.1
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEE
Q 000227 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITL 828 (1826)
Q Consensus 757 ~~~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~L 828 (1826)
...++|+++.|.|++|++||+||++++++.||+|.|++++.++.++.+.|++||.|+|+|+++|. ++|+.|
T Consensus 614 ~~~~~G~i~~G~V~~I~~~GafVei~~g~~GllHiSei~~~~v~~~~~~~kvGD~V~VkVi~id~-~gki~L 684 (684)
T TIGR03591 614 AEPEVGKIYEGKVVRIMDFGAFVEILPGKDGLVHISEIANERVEKVEDVLKEGDEVKVKVLEIDK-QGRIKL 684 (684)
T ss_pred cccccCcEEEEEEEEEeCCEEEEEECCCcEEEEEHHHcCCCcccChhhccCCCCEEEEEEEEECC-CCCccC
Confidence 35688999999999999999999999999999999999999999999999999999999999997 677654
No 136
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.17 E-value=5.4e-05 Score=86.29 Aligned_cols=135 Identities=19% Similarity=0.137 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000227 1669 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1748 (1826)
Q Consensus 1669 p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~ 1748 (1826)
.++...|++++..+|+....|..++.+..+.+++++|.+.+++|+..-+. ......|..+...-...| +.+.+..
T Consensus 82 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g--~~~~A~~ 156 (234)
T TIGR02521 82 EKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLY---PQPARSLENAGLCALKAG--DFDKAEK 156 (234)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc---ccchHHHHHHHHHHHHcC--CHHHHHH
Confidence 34455566666666666666666666666666666666666666542111 111234544444455556 5566666
Q ss_pred HHHHHHhcC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 000227 1749 VFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSI 1808 (1826)
Q Consensus 1749 vf~~a~~~~-~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~ 1808 (1826)
.|+++++.. +....|..++.+|...|++++|.++|+++++..+..+..|...+..+...+
T Consensus 157 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (234)
T TIGR02521 157 YLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALG 217 (234)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 666666433 345556666666666666666666666666665555555555555554443
No 137
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.16 E-value=9.7e-06 Score=97.12 Aligned_cols=137 Identities=18% Similarity=0.100 Sum_probs=107.6
Q ss_pred CCCCHHHHHHHHHhC--CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHH
Q 000227 1668 APRTPDEFERLVRSS--PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1826)
Q Consensus 1668 ~p~s~~~fer~l~~~--p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~ 1745 (1826)
.++..+-++++.... |++..+|+.++.++.+.|+.++|++.+++|++.-|.... +|..++.+-...| +.+.
T Consensus 126 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~-----~~~~l~~~li~~~--~~~~ 198 (280)
T PF13429_consen 126 YDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD-----ARNALAWLLIDMG--DYDE 198 (280)
T ss_dssp HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH-----HHHHHHHHHCTTC--HHHH
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHCC--ChHH
Confidence 333344555544333 688999999999999999999999999999987765443 8999999999999 7788
Q ss_pred HHHHHHHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccc
Q 000227 1746 VVKVFQRALQY-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILSI 1811 (1826)
Q Consensus 1746 ~~~vf~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~~ 1811 (1826)
++.+++++.+. ++...+|..++..|...|++++|.+.|+++++..|.++.++..||..+...|...
T Consensus 199 ~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 199 AREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKD 265 (280)
T ss_dssp HHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999865 5677899999999999999999999999999999999999999999999888654
No 138
>PRK09202 nusA transcription elongation factor NusA; Validated
Probab=98.09 E-value=3.5e-06 Score=105.67 Aligned_cols=108 Identities=22% Similarity=0.262 Sum_probs=83.2
Q ss_pred CcCCCCEEEEEEEEEeCCeE-EEEecchhhccchh--hcccccccc--CCcEEEEEEEEEecceEEEEEcCCeEEEEeCc
Q 000227 542 KFKVGAELVFRVLGVKSKRI-TVTHKKTLVKSKLA--ILSSYAEAT--DRLITHGWITKIEKHGCFVRFYNGVQGFAPRS 616 (1826)
Q Consensus 542 ~fkvG~~Vk~rVL~v~~~~i-~LSlK~~Lv~~~~~--~~~s~~~~~--~G~~~~G~V~~i~~~G~~V~~~~gv~G~vp~s 616 (1826)
.+++|+.+++.|...+-+|+ ..+.|+.+...... .-.-|+.++ .|+++.|+|.++.++|+||++ +++.||+|.+
T Consensus 86 ~~~vGD~ie~~I~~~~fgRia~q~aKq~i~Qkire~ere~i~~eyk~~~GeIV~G~V~ri~~~giiVDL-ggvea~LP~s 164 (470)
T PRK09202 86 DAEVGDYIEEEIESVDFGRIAAQTAKQVIVQKIREAERERVYEEYKDRVGEIITGVVKRVERGNIIVDL-GRAEAILPRK 164 (470)
T ss_pred cccCCCeEEEEEccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEEEEecCCEEEEE-CCeEEEecHH
Confidence 48999999998877754443 44444444332110 001133333 899999999999999999999 7899999999
Q ss_pred ccCCCCCCCCCCCccCCCEEEEEEEEEccCCC--EEEEEEee
Q 000227 617 ELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSFMM 656 (1826)
Q Consensus 617 el~~~~~~~~~~~~~vGq~V~vrVl~vd~~~~--ri~lS~k~ 656 (1826)
++. |.+.|++|+.++|.|+++|++++ +|.||.+.
T Consensus 165 E~i------p~E~~~~GdrIka~I~~Vd~~~kg~qIilSRt~ 200 (470)
T PRK09202 165 EQI------PRENFRPGDRVRAYVYEVRKEARGPQIILSRTH 200 (470)
T ss_pred HcC------CCccCCCCCEEEEEEEEEecCCCCCeEEEEeCc
Confidence 995 66789999999999999999887 99999864
No 139
>cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three RNA binding domains (RBD's). The RBD's include one S1 domain and two KH domains that form an RNA binding surface. DNA transcription by RNA polymerase (RNAP) includes three phases - initiation, elongation, and termination. During initiation, sigma factors bind RNAP and target RNAP to specific promoters. During elongation, N-utilization substances (NusA, B, E, and G) replace sigma factors and regulate pausing, termination, and antitermination. NusA is cold-shock-inducible.
Probab=98.09 E-value=1.7e-05 Score=73.37 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=54.6
Q ss_pred CCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCC--CeEEEE
Q 000227 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLS--KRVEVT 1446 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~--~rI~lS 1446 (1826)
..|++|.|.|.+++++|+||+++. .+|++|.++++ |.+.|++|+.|++.|++++.++ .+|.||
T Consensus 2 ~~g~iV~G~V~~~~~~~~~vdig~-~eg~lp~~e~~------~~~~~~~Gd~v~v~v~~v~~~~~~~~i~lS 66 (67)
T cd04455 2 REGEIVTGIVKRVDRGNVIVDLGK-VEAILPKKEQI------PGESYRPGDRIKAYVLEVRKTSKGPQIILS 66 (67)
T ss_pred CCCCEEEEEEEEEcCCCEEEEcCC-eEEEeeHHHCC------CCCcCCCCCEEEEEEEEEecCCCCCEEEEe
Confidence 469999999999999999999985 99999999987 3456899999999999998654 356666
No 140
>cd05699 S1_Rrp5_repeat_hs7 S1_Rrp5_repeat_hs7: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 7 (hs7). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=98.08 E-value=1.1e-05 Score=74.04 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=55.8
Q ss_pred CcEEEEEEEEEecCceEEEecccCceEEEEeeeccCCc---------cccCCCeE-EEEEEEeecccCEEEEeeh
Q 000227 875 GSVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGA---------TVESGSVI-QAAILDVAKAERLVDLSLK 939 (1826)
Q Consensus 875 G~~V~g~V~~i~~~Gv~v~l~~~~~v~g~i~~~~ls~~---------~~~~G~~v-~~~Vl~vd~~~~~v~lS~k 939 (1826)
|++|+|+|.++++++++|++++. ++.|++|..||||+ .+++||++ .++|+ +...+.+.||.|
T Consensus 1 G~lV~~~V~EKt~D~l~v~l~~~-~l~a~l~~~HLsD~~~k~~~~~~klrvG~~L~~~lvL--~~~~r~i~lt~K 72 (72)
T cd05699 1 GKLVDARVLKKTLNGLEVAILPE-EIRAFLPTMHLSDHVSNCPLLWHCLQEGDTIPNLMCL--SNYKGRIILTKK 72 (72)
T ss_pred CceEEEEEEEEcCCcEEEEecCC-CcEEEEEccccCCchhhCHHHHhhhhcCCCccceEEE--eccccEEEEecC
Confidence 78999999999999999999985 89999999999993 68999999 77777 888888888765
No 141
>TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form. This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE.
Probab=98.07 E-value=1.5e-05 Score=88.74 Aligned_cols=78 Identities=26% Similarity=0.551 Sum_probs=67.1
Q ss_pred CCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCccccc-----------CccccCCCCCEEEEEEEEEe-----CC
Q 000227 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVD-----KE 1530 (1826)
Q Consensus 1467 ~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~-----------~~~~~~~~Gd~Vk~kVl~id-----~e 1530 (1826)
.+|+++.|+|++++++|+||+|+ .++|++|.+++.+++.. +....|+.||.|+++|+++| ++
T Consensus 80 ~~gEvv~G~V~~v~~~GifV~lg--~~~gi~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~~ 157 (179)
T TIGR00448 80 ELGEIVEGEVIEIVEFGAFVSLG--PFDGLFHVSQVTDDYCYYDPKESALIGKETKKVLDEGDKVRARIVALSLKDRRPE 157 (179)
T ss_pred cCCCEEEEEEEEEEeeEEEEEeC--CceEEEEcHHhCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEccCCCCC
Confidence 47999999999999999999995 59999999999866542 12367999999999999999 67
Q ss_pred CCeEEEeeeccccCCC
Q 000227 1531 KRRISLGMKSSYFKND 1546 (1826)
Q Consensus 1531 ~~rI~LslK~s~~~~~ 1546 (1826)
..+|.||+|..|....
T Consensus 158 ~~~I~lt~k~~~LG~~ 173 (179)
T TIGR00448 158 GSKIGLTMRQPLLGKL 173 (179)
T ss_pred cceEEEEeccCcCCcc
Confidence 8899999999888543
No 142
>PRK09202 nusA transcription elongation factor NusA; Validated
Probab=98.06 E-value=4.1e-06 Score=105.08 Aligned_cols=120 Identities=18% Similarity=0.255 Sum_probs=91.2
Q ss_pred ccCCCCEEEEEEEeecCCCeEEEeccccccccccc--CCCccccCC--CCCEEEEEEEEEeeceEEEEECCCeEEEEeCC
Q 000227 717 VIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHIH--PNSVVHGYVCNIIETGCFVRFLGRLTGFAPRS 792 (1826)
Q Consensus 717 ~lk~G~~i~~vl~id~~~~~v~ls~K~sl~~~~~~--i~~~~~~~~--~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s 792 (1826)
.+++|+.++..+....-++....+.|+.+...+.. --.-|+.++ .|++++|+|.+++++|+||.+ ||+.||+|++
T Consensus 86 ~~~vGD~ie~~I~~~~fgRia~q~aKq~i~Qkire~ere~i~~eyk~~~GeIV~G~V~ri~~~giiVDL-ggvea~LP~s 164 (470)
T PRK09202 86 DAEVGDYIEEEIESVDFGRIAAQTAKQVIVQKIREAERERVYEEYKDRVGEIITGVVKRVERGNIIVDL-GRAEAILPRK 164 (470)
T ss_pred cccCCCeEEEEEccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEEEEecCCEEEEE-CCeEEEecHH
Confidence 47899999833222223344566677777665542 011245565 899999999999999999999 7899999999
Q ss_pred CcCcccccCcccCCCCCCEEEEEEEEeeCCCC--eEEEEecccccCCCcchhhHHHHHHH
Q 000227 793 KAVDGQRADLSKTYYVGQSVRSNILDVNSETG--RITLSLKQSCCSSTDASFMQEHFLLE 850 (1826)
Q Consensus 793 ~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~--rl~LSlk~~~~~~~~~~~~~~~~~~~ 850 (1826)
+++ |.+.|++||.|+|+|++++.+++ .+.||.+ ++.|+..+|...
T Consensus 165 E~i------p~E~~~~GdrIka~I~~Vd~~~kg~qIilSRt-------~p~~l~~Lf~~E 211 (470)
T PRK09202 165 EQI------PRENFRPGDRVRAYVYEVRKEARGPQIILSRT-------HPEFLKKLFEQE 211 (470)
T ss_pred HcC------CCccCCCCCEEEEEEEEEecCCCCCeEEEEeC-------cHHHHHHHHHHh
Confidence 985 77889999999999999999877 8999865 456677777643
No 143
>cd04455 S1_NusA S1_NusA: N-utilizing substance A protein (NusA), S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. NusA is a transcription elongation factor containing an N-terminal catalytic domain and three RNA binding domains (RBD's). The RBD's include one S1 domain and two KH domains that form an RNA binding surface. DNA transcription by RNA polymerase (RNAP) includes three phases - initiation, elongation, and termination. During initiation, sigma factors bind RNAP and target RNAP to specific promoters. During elongation, N-utilization substances (NusA, B, E, and G) replace sigma factors and regulate pausing, termination, and antitermination. NusA is cold-shock-inducible.
Probab=98.06 E-value=1.4e-05 Score=73.83 Aligned_cols=63 Identities=19% Similarity=0.411 Sum_probs=54.5
Q ss_pred CCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCC--CeEEEE
Q 000227 760 HPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLS 829 (1826)
Q Consensus 760 ~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~--~rl~LS 829 (1826)
+.|+++.|.|.+++++|+||.+. +..|++|+++++. .+.|++|+.|++.|.+++.++ ..+.||
T Consensus 2 ~~g~iV~G~V~~~~~~~~~vdig-~~eg~lp~~e~~~------~~~~~~Gd~v~v~v~~v~~~~~~~~i~lS 66 (67)
T cd04455 2 REGEIVTGIVKRVDRGNVIVDLG-KVEAILPKKEQIP------GESYRPGDRIKAYVLEVRKTSKGPQIILS 66 (67)
T ss_pred CCCCEEEEEEEEEcCCCEEEEcC-CeEEEeeHHHCCC------CCcCCCCCEEEEEEEEEecCCCCCEEEEe
Confidence 36999999999999999999994 5999999999863 457999999999999999765 457776
No 144
>TIGR02063 RNase_R ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans.
Probab=98.06 E-value=9.9e-06 Score=108.73 Aligned_cols=76 Identities=32% Similarity=0.649 Sum_probs=65.9
Q ss_pred ccccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccc-----------cCccccCCCCCEEEEEEEEEeCCC
Q 000227 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEK 1531 (1826)
Q Consensus 1463 ~~~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~-----------~~~~~~~~~Gd~Vk~kVl~id~e~ 1531 (1826)
+..-++|+++.|+|++|++||+||+|.+.+++||+|+|++.+++. ++....|++||.|+|+|.++|.++
T Consensus 622 yl~~~iG~~~~g~V~~v~~fGifV~L~~~~~eGlvhis~l~~d~~~~d~~~~~l~g~~~~~~~~lGd~V~Vkv~~vd~~~ 701 (709)
T TIGR02063 622 YMSEKIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFRLGDRVKVRVVKADLDT 701 (709)
T ss_pred hhhccCCcEEEEEEEEEEeCCEEEEecCCceEEEEEeeecCCCcEEEcccceEEEeccCCcEECCCCEEEEEEEEEeccc
Confidence 445578999999999999999999998656999999999986643 223467999999999999999999
Q ss_pred CeEEEee
Q 000227 1532 RRISLGM 1538 (1826)
Q Consensus 1532 ~rI~Lsl 1538 (1826)
++|.|++
T Consensus 702 ~~I~~~l 708 (709)
T TIGR02063 702 GKIDFEL 708 (709)
T ss_pred CeEEEEE
Confidence 9999986
No 145
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.02 E-value=0.00011 Score=83.75 Aligned_cols=138 Identities=13% Similarity=0.171 Sum_probs=121.7
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHH
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e 1744 (1826)
.++..++...|++++..+|++...|...+..++..++.++|++.+++|++..+.. ..+|..+..+-...| +.+
T Consensus 44 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~~~g--~~~ 116 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN-----GDVLNNYGTFLCQQG--KYE 116 (234)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcc--cHH
Confidence 5667788999999999999999999999999999999999999999999765432 247888888888899 789
Q ss_pred HHHHHHHHHHhcC---CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1745 AVVKVFQRALQYC---DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1745 ~~~~vf~~a~~~~---~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
.+...|+++++.+ .....|..++.+|...|++++|.+.|+++++..|.....|..++.+++..+.
T Consensus 117 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 117 QAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC
Confidence 9999999999643 4567889999999999999999999999999999999999999999888765
No 146
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=6.9e-06 Score=103.40 Aligned_cols=76 Identities=24% Similarity=0.440 Sum_probs=71.4
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEeccc
Q 000227 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1826)
Q Consensus 757 ~~~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~ 833 (1826)
.++.+|.++.|.|++|.+||+||+|.+|=.||+|+|++++.++.+.++.+++||.|.|+|+.+|. .+|+.||++..
T Consensus 615 ~e~evg~iy~G~V~ri~~fGaFv~l~~gkdgl~hiS~~~~~rv~kv~dvlk~Gd~v~Vkv~~iD~-~Gri~ls~~~~ 690 (692)
T COG1185 615 REVEVGEVYEGTVVRIVDFGAFVELLPGKDGLVHISQLAKERVEKVEDVLKEGDEVKVKVIEIDK-QGRIRLSIKAV 690 (692)
T ss_pred hhcccccEEEEEEEEEeecceEEEecCCcceeEEehhhhhhhhhcccceeecCceEEEEEeeecc-cCCccceehhc
Confidence 66889999999999999999999999999999999999999999999999999999999999994 68999998753
No 147
>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription]
Probab=98.00 E-value=1.4e-05 Score=86.02 Aligned_cols=77 Identities=30% Similarity=0.591 Sum_probs=64.7
Q ss_pred CCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCccccc----------C-ccccCCCCCEEEEEEEEEeCCC----
Q 000227 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD----------N-IETIYRAGEKVKVKILKVDKEK---- 1531 (1826)
Q Consensus 1467 ~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~----------~-~~~~~~~Gd~Vk~kVl~id~e~---- 1531 (1826)
-.|++|.|.|+++.+||+||.|++ ++||+|+|++.|+++. + -...+++||.|+++|+.+....
T Consensus 80 ~~gEVV~GeVv~~~~~G~fV~igp--~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~VR~RIv~~s~~~~~~~ 157 (183)
T COG1095 80 FRGEVVEGEVVEVVEFGAFVRIGP--LDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKVRARIVGVSLKSRRPR 157 (183)
T ss_pred ccccEEEEEEEEEeecceEEEecc--ccccccHhhccCcccccCcccceeeecccceEEecCCEEEEEEEEEecccCccc
Confidence 469999999999999999999974 9999999999988441 1 2348999999999999988654
Q ss_pred -CeEEEeeeccccCC
Q 000227 1532 -RRISLGMKSSYFKN 1545 (1826)
Q Consensus 1532 -~rI~LslK~s~~~~ 1545 (1826)
-+|.|+||+.+...
T Consensus 158 ~~~I~lTmrq~~LGk 172 (183)
T COG1095 158 ESKIGLTMRQPGLGK 172 (183)
T ss_pred cceEEEEeccccCCc
Confidence 57899999877644
No 148
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.99 E-value=6.1e-05 Score=93.87 Aligned_cols=128 Identities=14% Similarity=0.301 Sum_probs=109.5
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHH-HcCCCCHHHHHHHH
Q 000227 1672 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN-EYGNPPEEAVVKVF 1750 (1826)
Q Consensus 1672 ~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~-~~G~~~~e~~~~vf 1750 (1826)
+..|...|..-|..--.|.+|+.+|.++|+++.+-+|+||++..||..- -+|+-|+++=. .+| +.+.++.+|
T Consensus 65 r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~Sv-----dlW~~Y~~f~~n~~~--d~~~lr~~f 137 (577)
T KOG1258|consen 65 REVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSV-----DLWLSYLAFLKNNNG--DPETLRDLF 137 (577)
T ss_pred HHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHhccCC--CHHHHHHHH
Confidence 4456677778899999999999999999999999999999999998754 38999999866 567 789999999
Q ss_pred HHHHhcCC----cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHh
Q 000227 1751 QRALQYCD----PKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVIIELLSFHFT 1806 (1826)
Q Consensus 1751 ~~a~~~~~----~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~-~~~~w~~~~~~~~~ 1806 (1826)
++|..++. +.++|-+|+.++..+.++...-++|++.++-=.+ -...+.+|-+++-+
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhc
Confidence 99999885 7899999999999999999999999999876432 35666667666544
No 149
>PRK11642 exoribonuclease R; Provisional
Probab=97.95 E-value=2e-05 Score=105.79 Aligned_cols=75 Identities=31% Similarity=0.603 Sum_probs=65.3
Q ss_pred ccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccc--c---------CccccCCCCCEEEEEEEEEeCCCCe
Q 000227 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV--D---------NIETIYRAGEKVKVKILKVDKEKRR 1533 (1826)
Q Consensus 1465 ~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~--~---------~~~~~~~~Gd~Vk~kVl~id~e~~r 1533 (1826)
.-++|+++.|+|++|++||+||+|++.+++||+|++++.+++. + +....|++||.|+++|.++|.++++
T Consensus 640 ~~~iGe~f~G~Is~V~~fGifVeL~~~~vEGlV~vs~L~~d~y~~d~~~~~L~g~~~~~~~~lGD~V~VkV~~vD~~~rk 719 (813)
T PRK11642 640 LDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDERK 719 (813)
T ss_pred hccCCcEEEEEEEEeecCceEEEECCCCeeeeEEEeecCCcceEecchheEEecccCCcEECCCCEEEEEEEEeecCCCe
Confidence 3378999999999999999999998767999999999987632 1 2246799999999999999999999
Q ss_pred EEEeee
Q 000227 1534 ISLGMK 1539 (1826)
Q Consensus 1534 I~LslK 1539 (1826)
|.|++-
T Consensus 720 I~f~l~ 725 (813)
T PRK11642 720 IDFSLI 725 (813)
T ss_pred EEEEEe
Confidence 999983
No 150
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=97.92 E-value=2.4e-05 Score=93.73 Aligned_cols=136 Identities=13% Similarity=0.144 Sum_probs=66.8
Q ss_pred CCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000227 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1826)
Q Consensus 1668 ~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~ 1747 (1826)
..++..-+++++... .+...|..|+....+.++.++|..+++++....... ....+|..+.++....| +.+.|.
T Consensus 93 ~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~a~~~~~~G--~~~~A~ 166 (280)
T PF13429_consen 93 PEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP---DSARFWLALAEIYEQLG--DPDKAL 166 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T------T-HHHHHHHHHHHHHCC--HHHHHH
T ss_pred ccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC---CCHHHHHHHHHHHHHcC--CHHHHH
Confidence 334444444444433 335556666666666677777777777665433221 22346777777777777 557777
Q ss_pred HHHHHHHh-cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1748 KVFQRALQ-YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1748 ~vf~~a~~-~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
..|++|+. .|+...++..++.++.+.|++++|+++++...+..|.++.+|..++..++..|+
T Consensus 167 ~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~ 229 (280)
T PF13429_consen 167 RDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR 229 (280)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc
Confidence 77777774 344566666677777777777777777777666666666777777766665554
No 151
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.90 E-value=0.00024 Score=79.16 Aligned_cols=140 Identities=17% Similarity=0.205 Sum_probs=119.7
Q ss_pred hcccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCC
Q 000227 1663 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1742 (1826)
Q Consensus 1663 ~~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~ 1742 (1826)
+..++.-++...+|++|..+|++-..|.-.+-+..+.|+.+.|++-.++|++.-|.+- + |-.-|=.|-+..| .
T Consensus 46 L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G--d---VLNNYG~FLC~qg--~ 118 (250)
T COG3063 46 LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG--D---VLNNYGAFLCAQG--R 118 (250)
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc--c---hhhhhhHHHHhCC--C
Confidence 3467777889999999999999999999999999999999999999999997655442 2 4445555558889 5
Q ss_pred HHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1743 EEAVVKVFQRALQ---YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1743 ~e~~~~vf~~a~~---~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
.+.+..-|++|++ |..+...|..+.-.-.+.|+.+.|++.|+++++.-|+.+......++.+++.++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 6999999999996 456788888888888899999999999999999999999999999988877664
No 152
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.89 E-value=0.00022 Score=86.94 Aligned_cols=135 Identities=18% Similarity=0.222 Sum_probs=111.4
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhcCC------------HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcC
Q 000227 1672 PDEFERLVRSSPNSSFVWIKYMAFMLSMAD------------VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG 1739 (1826)
Q Consensus 1672 ~~~fer~l~~~p~ss~lWi~y~~f~l~~~e------------i~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G 1739 (1826)
..+|+|.+..+|++-..||.|++|+-.+-. .++.-.|++|||+.-+.++ .+|+.||.+=....
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~-----~L~l~~l~~~~~~~ 79 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSE-----RLLLGYLEEGEKVW 79 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhC
Confidence 457999999999999999999999988654 5667788999999865554 49999999988888
Q ss_pred CCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHH---cCChHHHHHHHHHHHHHcCC------------------CHHHH
Q 000227 1740 NPPEEAVVKVFQRALQY-CDPKKVHLALLGLYER---TEQNKLADELLYKMIKKFKH------------------SCKVI 1797 (1826)
Q Consensus 1740 ~~~~e~~~~vf~~a~~~-~~~~kv~~~~~~i~~~---~~~~~~a~~~~~~~~kk~~~------------------~~~~w 1797 (1826)
+.+.+.+-+++++.. +....+|..|+.+... .-.++..+.+|.+.++.... -..++
T Consensus 80 --~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~ 157 (321)
T PF08424_consen 80 --DSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVF 157 (321)
T ss_pred --CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHH
Confidence 779999999999965 5689999999998754 34689999999999987722 14678
Q ss_pred HHHHHHHHhccccccC
Q 000227 1798 IELLSFHFTSILSIFG 1813 (1826)
Q Consensus 1798 ~~~~~~~~~~~~~~~~ 1813 (1826)
++++.|+...|-.+.-
T Consensus 158 ~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 158 LRLCRFLRQAGYTERA 173 (321)
T ss_pred HHHHHHHHHCCchHHH
Confidence 8889998888776643
No 153
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.85 E-value=0.00034 Score=87.72 Aligned_cols=143 Identities=14% Similarity=0.123 Sum_probs=102.7
Q ss_pred hcccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCC
Q 000227 1663 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1742 (1826)
Q Consensus 1663 ~~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~ 1742 (1826)
...++..++...|++++..+|++..+|...+.+..+.+++++|..+++++++.-+ .........|..+..+-...| +
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~La~~~~~~g--~ 122 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD-LTREQRLLALQELGQDYLKAG--L 122 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHCC--C
Confidence 4456677899999999999999999999999999999999999999999986422 112223456677676666778 7
Q ss_pred HHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHhcc
Q 000227 1743 EEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC-----KVIIELLSFHFTSI 1808 (1826)
Q Consensus 1743 ~e~~~~vf~~a~~~~-~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~-----~~w~~~~~~~~~~~ 1808 (1826)
.+.|..+|+++++.+ .....|..++.+|.+.|++++|.++|+++++..|... ..|...+..++.++
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 788888888888643 3456677777777777777777777777776665432 23444454444443
No 154
>cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In S. cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=97.84 E-value=4.7e-05 Score=74.90 Aligned_cols=74 Identities=19% Similarity=0.367 Sum_probs=64.2
Q ss_pred cCCCCEEEEEEEEEeeceEEEEEe-------cCceEEEEEccccCccccc--CccccCCCCCEEEEEEEEEeCCCCeEEE
Q 000227 1466 LHVGDIVIGQIKRVESYGLFITIE-------NTNLVGLCHVSELSEDHVD--NIETIYRAGEKVKVKILKVDKEKRRISL 1536 (1826)
Q Consensus 1466 ~~~G~iv~G~V~~v~~~GvFV~l~-------~~~v~Gl~h~sels~~~~~--~~~~~~~~Gd~Vk~kVl~id~e~~rI~L 1536 (1826)
.++|++|.|+|+++....++|+|. +....|.+|++++...+.+ ++.+.|++||.|+|+|++++ +.+.+.|
T Consensus 4 P~~GDiVig~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~~dv~~~~~d~~~~~~~f~~GDiV~AkVis~~-~~~~~~L 82 (92)
T cd05791 4 PKVGSIVIARVTRINPRFAKVDILCVGGRPLKESFRGVIRKEDIRATEKDKVEMYKCFRPGDIVRAKVISLG-DASSYYL 82 (92)
T ss_pred CCCCCEEEEEEEEEcCCEEEEEEEEecCeecCCCcccEEEHHHccccccchHHHHhhcCCCCEEEEEEEEcC-CCCCcEE
Confidence 378999999999999999999992 2368999999999887776 68899999999999999998 3466889
Q ss_pred eeec
Q 000227 1537 GMKS 1540 (1826)
Q Consensus 1537 slK~ 1540 (1826)
|++.
T Consensus 83 st~~ 86 (92)
T cd05791 83 STAE 86 (92)
T ss_pred EecC
Confidence 9875
No 155
>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases. This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases.
Probab=97.84 E-value=4.1e-05 Score=101.51 Aligned_cols=74 Identities=31% Similarity=0.595 Sum_probs=64.4
Q ss_pred ccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccc-----------cCccccCCCCCEEEEEEEEEeCCCCe
Q 000227 1465 NLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEKRR 1533 (1826)
Q Consensus 1465 ~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~-----------~~~~~~~~~Gd~Vk~kVl~id~e~~r 1533 (1826)
.-++|+++.|+|++|++||+||+|.+.+++||+|++++.+++. ++....|++||.|+++|.++|.++++
T Consensus 569 ~~~iG~~~~g~I~~v~~~GifV~L~~~~veGlV~~s~l~~d~y~~d~~~~~l~g~~~~~~~~lGD~V~Vki~~vd~~~~~ 648 (654)
T TIGR00358 569 LDKVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYRIGDRVTVKLTEVNMETRS 648 (654)
T ss_pred hhCCCcEEEEEEEeEEcCcEEEEecCCceEEEEEeEeCCCcceEEeccccEEEeccCCcEECCCCEEEEEEEEEecccCe
Confidence 3467999999999999999999998558999999999987641 12336799999999999999999999
Q ss_pred EEEee
Q 000227 1534 ISLGM 1538 (1826)
Q Consensus 1534 I~Lsl 1538 (1826)
|.|++
T Consensus 649 I~f~l 653 (654)
T TIGR00358 649 IIFEL 653 (654)
T ss_pred EEEEE
Confidence 99986
No 156
>TIGR00448 rpoE DNA-directed RNA polymerase (rpoE), archaeal and eukaryotic form. This family seems to be confined to the archea and eukaryotic taxa and are quite dissimilar to E.coli rpoE.
Probab=97.83 E-value=6.2e-05 Score=83.77 Aligned_cols=77 Identities=22% Similarity=0.384 Sum_probs=65.9
Q ss_pred CCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccC-C----------CCccCCCCcEEEEEEEEEe-----CCC
Q 000227 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-S----------PEKEFPIGKLVAGRVLSVE-----PLS 1440 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~-~----------~~~~f~vGq~V~~kVl~vd-----~e~ 1440 (1826)
..|+++.|.|++++++|+||+++ .++|++|.+++.+.+.. | ....|++|+.|+++|++++ ++.
T Consensus 80 ~~gEvv~G~V~~v~~~GifV~lg-~~~gi~~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~~~~~~~~~ 158 (179)
T TIGR00448 80 ELGEIVEGEVIEIVEFGAFVSLG-PFDGLFHVSQVTDDYCYYDPKESALIGKETKKVLDEGDKVRARIVALSLKDRRPEG 158 (179)
T ss_pred cCCCEEEEEEEEEEeeEEEEEeC-CceEEEEcHHhCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEccCCCCCc
Confidence 36999999999999999999997 59999999999876532 2 3467999999999999998 677
Q ss_pred CeEEEEEecccccc
Q 000227 1441 KRVEVTLKTSDSRT 1454 (1826)
Q Consensus 1441 ~rI~lSlk~s~~~~ 1454 (1826)
.+|.+|+|+.-..+
T Consensus 159 ~~I~lt~k~~~LG~ 172 (179)
T TIGR00448 159 SKIGLTMRQPLLGK 172 (179)
T ss_pred ceEEEEeccCcCCc
Confidence 89999999876554
No 157
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.83 E-value=0.00033 Score=75.24 Aligned_cols=124 Identities=10% Similarity=-0.060 Sum_probs=108.0
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 000227 1672 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1751 (1826)
Q Consensus 1672 ~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~ 1751 (1826)
.+.|++++..+|++ |..+..-..+.|+++.|...+++|+..-|. ..+.|..+..+=...| ..+.|...|+
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-----~~~a~~~lg~~~~~~g--~~~~A~~~y~ 82 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPW-----SWRAHIALAGTWMMLK--EYTTAINFYG 82 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----cHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 46899999999996 666677778999999999999999864433 3468999999889999 8899999999
Q ss_pred HHHhcC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 000227 1752 RALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHF 1805 (1826)
Q Consensus 1752 ~a~~~~-~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~ 1805 (1826)
+|++.+ +....|..++..+.+.|++++|.+.|+++++..|..+..|...+..+.
T Consensus 83 ~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 83 HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999654 578999999999999999999999999999999999999988777653
No 158
>TIGR01953 NusA transcription termination factor NusA. This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids.
Probab=97.79 E-value=4.6e-05 Score=92.18 Aligned_cols=122 Identities=19% Similarity=0.372 Sum_probs=87.3
Q ss_pred cccccCCCCEEEEEEEeecCCCeEEEecccccccc---c--ccCCCccccCCCCCEEEEEEEEEeece-EEEEECCCeEE
Q 000227 714 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS---A--QQLPSDASHIHPNSVVHGYVCNIIETG-CFVRFLGRLTG 787 (1826)
Q Consensus 714 l~~~lk~G~~i~~vl~id~~~~~v~ls~K~sl~~~---~--~~i~~~~~~~~~G~~~~G~V~~i~~~G-vfV~f~~gl~G 787 (1826)
+...+++||.++..+..+.-.+....++|+.+... . +.+...|.+ +.|++++|+|.++.+.| +||.+ |++.|
T Consensus 80 ~d~~~~vGD~I~~~I~~~~fgR~aaq~aKqvi~Qkire~ere~i~~ey~~-k~GeiV~G~V~~v~~~g~v~Vdi-G~~ea 157 (341)
T TIGR01953 80 IDPDVQIGDEVKKEIPPENFGRIAAQTAKQVILQKIREAERERVYDEFSS-KEGEIISGTVKRVNRRGNLYVEL-GKTEG 157 (341)
T ss_pred hccccccCCEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCcEEEEE-CCeEE
Confidence 44568899999844433333444556667755322 1 123333333 58999999999999988 79999 79999
Q ss_pred EEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCC--CeEEEEecccccCCCcchhhHHHHHHH
Q 000227 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSET--GRITLSLKQSCCSSTDASFMQEHFLLE 850 (1826)
Q Consensus 788 lv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~--~rl~LSlk~~~~~~~~~~~~~~~~~~~ 850 (1826)
++|++++. |.+.|++||.++|.|++++.+. ..+.||.+ ++.|+..+|...
T Consensus 158 ~LP~~E~i------p~E~~~~Gd~ik~~V~~V~~~~kg~qIivSRt-------~~~~v~~Lfe~E 209 (341)
T TIGR01953 158 ILPKKEQI------PGEKFRIGDRIKAYVYEVRKTAKGPQIILSRT-------HPEFVKELLKLE 209 (341)
T ss_pred EecHHHcC------CCcCCCCCCEEEEEEEEEEcCCCCCeEEEEeC-------cHHHHHHHHHHh
Confidence 99999886 4567999999999999999654 56888865 445676666643
No 159
>cd05791 S1_CSL4 S1_CSL4: CSL4, S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. ScCSL4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In S. cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=97.78 E-value=6.4e-05 Score=74.00 Aligned_cols=74 Identities=12% Similarity=0.157 Sum_probs=66.2
Q ss_pred CCCCEEEEEEEEEecceEEEEe--------CCCeEEEEEccccCCCccC--CCCccCCCCcEEEEEEEEEeCCCCeEEEE
Q 000227 1377 SPNMIVQGYVKNVTSKGCFIML--------SRKLDAKVLLSNLSDGYVE--SPEKEFPIGKLVAGRVLSVEPLSKRVEVT 1446 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~~GvFV~l--------~~~v~g~v~iselsd~~v~--~~~~~f~vGq~V~~kVl~vd~e~~rI~lS 1446 (1826)
++|++|.|+|++++...++|++ .....|.+|++++...+.. +..+.|.+|+.|+|+|++++. .+.+.||
T Consensus 5 ~~GDiVig~V~~v~~~~~~v~I~~v~~~~l~~~~~g~l~~~dv~~~~~d~~~~~~~f~~GDiV~AkVis~~~-~~~~~Ls 83 (92)
T cd05791 5 KVGSIVIARVTRINPRFAKVDILCVGGRPLKESFRGVIRKEDIRATEKDKVEMYKCFRPGDIVRAKVISLGD-ASSYYLS 83 (92)
T ss_pred CCCCEEEEEEEEEcCCEEEEEEEEecCeecCCCcccEEEHHHccccccchHHHHhhcCCCCEEEEEEEEcCC-CCCcEEE
Confidence 7899999999999999999999 8889999999999988776 688999999999999999984 4679999
Q ss_pred Eeccc
Q 000227 1447 LKTSD 1451 (1826)
Q Consensus 1447 lk~s~ 1451 (1826)
++...
T Consensus 84 t~~~~ 88 (92)
T cd05791 84 TAENE 88 (92)
T ss_pred ecCCC
Confidence 87643
No 160
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]
Probab=97.78 E-value=1.9e-05 Score=95.45 Aligned_cols=76 Identities=18% Similarity=0.216 Sum_probs=69.4
Q ss_pred ccCCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEecc
Q 000227 757 SHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQ 832 (1826)
Q Consensus 757 ~~~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~ 832 (1826)
.++..|.+++++|+++.++|+||+|+++..||+|.|+|+-+.+..|++.+.+||.|.++.+..|+..+.++++-+-
T Consensus 664 ~~l~~g~vy~~tIt~~rd~G~~V~l~p~~~~Llh~sqL~~e~iakpsd~levGq~I~vk~ie~d~~g~~~ls~ral 739 (760)
T KOG1067|consen 664 QDLEFGGVYTATITEIRDTGVMVELYPMQQGLLHNSQLDQEKIAKPSDLLEVGQEIQVKYIERDPRGGIMLSSRAL 739 (760)
T ss_pred cceEeeeEEEEEEeeecccceEEEecCCchhhccchhcccccccChHHHHhhcceeEEEEEeecCccceeehhhhh
Confidence 4566799999999999999999999999999999999999999999999999999999999999988777766443
No 161
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.76 E-value=0.00042 Score=78.59 Aligned_cols=118 Identities=16% Similarity=0.140 Sum_probs=100.6
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHH-HHHcCCCCHHHHHHHH
Q 000227 1672 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL-ENEYGNPPEEAVVKVF 1750 (1826)
Q Consensus 1672 ~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~l-E~~~G~~~~e~~~~vf 1750 (1826)
..-|++++..+|++...|+......+.+++++.|...+++|++.-+. ...+|..|... -..-|....+.++.+|
T Consensus 59 i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-----~~~~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 59 LQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-----NAELYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 55688999999999999999999999999999999999999875543 34589998884 4666721148999999
Q ss_pred HHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH
Q 000227 1751 QRALQY-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC 1794 (1826)
Q Consensus 1751 ~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~ 1794 (1826)
++|++. ++....|..++..+.+.|++++|...|+++++..|...
T Consensus 134 ~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 134 DKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 999955 56889999999999999999999999999999996543
No 162
>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional
Probab=97.74 E-value=0.00012 Score=82.28 Aligned_cols=78 Identities=23% Similarity=0.506 Sum_probs=65.8
Q ss_pred cCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCccccc-----------CccccCCCCCEEEEEEEEEeCCC---
Q 000227 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVD-----------NIETIYRAGEKVKVKILKVDKEK--- 1531 (1826)
Q Consensus 1466 ~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~-----------~~~~~~~~Gd~Vk~kVl~id~e~--- 1531 (1826)
..+|+++.|+|+++.++|+||+|+ .++|++|.+++.+++.. +....|+.||.|+++|++++.+.
T Consensus 79 P~~GEVv~g~V~~v~~~Gi~V~lg--~~~g~v~~~~l~~~~~~~d~~~~~~~~~~~~~~i~~Gd~VrvrV~~v~~~~~~~ 156 (187)
T PRK08563 79 PELQEVVEGEVVEVVEFGAFVRIG--PVDGLLHISQIMDDYISYDPKNGRLIGKESKRVLKVGDVVRARIVAVSLKERRP 156 (187)
T ss_pred ccCCCEEEEEEEEEEccEEEEEEe--CceEEEEcHHcCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEcccCCC
Confidence 347999999999999999999997 49999999999876432 23567899999999999999764
Q ss_pred --CeEEEeeeccccCC
Q 000227 1532 --RRISLGMKSSYFKN 1545 (1826)
Q Consensus 1532 --~rI~LslK~s~~~~ 1545 (1826)
.+|.+|++..++..
T Consensus 157 ~~~~I~ls~~~~~LG~ 172 (187)
T PRK08563 157 RGSKIGLTMRQPGLGK 172 (187)
T ss_pred CCCEEEEEecCCCCCc
Confidence 38999999987743
No 163
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.71 E-value=0.00065 Score=71.66 Aligned_cols=120 Identities=8% Similarity=-0.058 Sum_probs=102.3
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 000227 1673 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1752 (1826)
Q Consensus 1673 ~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~ 1752 (1826)
+-|++++..+|++...-+.++...++.++.++|...+++++..-+. ....|..+..+-...| +.+.|...|++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~~~la~~~~~~~--~~~~A~~~~~~ 76 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-----NSRYWLGLAACCQMLK--EYEEAIDAYAL 76 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-----cHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 4588999999999888888899999999999999999999764332 2347888888877889 77999999999
Q ss_pred HHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHH
Q 000227 1753 ALQY-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIE 1799 (1826)
Q Consensus 1753 a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~ 1799 (1826)
++.. ++....|..++.+|...|++++|.+.|+++++..|.....|..
T Consensus 77 ~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 124 (135)
T TIGR02552 77 AAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSEL 124 (135)
T ss_pred HHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 9854 5678999999999999999999999999999999987775543
No 164
>KOG1067 consensus Predicted RNA-binding polyribonucleotide nucleotidyltransferase [General function prediction only]
Probab=97.68 E-value=4e-05 Score=92.80 Aligned_cols=79 Identities=19% Similarity=0.389 Sum_probs=71.3
Q ss_pred ccccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeeccc
Q 000227 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSY 1542 (1826)
Q Consensus 1463 ~~~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s~ 1542 (1826)
..++..|-+++++|+.+.+||+||+|.+ ...||||+|+++.+++..+++.+++||.+.++.++.|+ ++.+.++-|+..
T Consensus 663 ~~~l~~g~vy~~tIt~~rd~G~~V~l~p-~~~~Llh~sqL~~e~iakpsd~levGq~I~vk~ie~d~-~g~~~ls~ralL 740 (760)
T KOG1067|consen 663 VQDLEFGGVYTATITEIRDTGVMVELYP-MQQGLLHNSQLDQEKIAKPSDLLEVGQEIQVKYIERDP-RGGIMLSSRALL 740 (760)
T ss_pred ccceEeeeEEEEEEeeecccceEEEecC-CchhhccchhcccccccChHHHHhhcceeEEEEEeecC-ccceeehhhhhc
Confidence 4578899999999999999999999988 89999999999999999999999999999999999995 666777777754
Q ss_pred c
Q 000227 1543 F 1543 (1826)
Q Consensus 1543 ~ 1543 (1826)
-
T Consensus 741 p 741 (760)
T KOG1067|consen 741 P 741 (760)
T ss_pred C
Confidence 3
No 165
>TIGR02063 RNase_R ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans.
Probab=97.68 E-value=9.5e-05 Score=99.42 Aligned_cols=73 Identities=19% Similarity=0.357 Sum_probs=63.9
Q ss_pred cCCCCCEEEEEEEEEeeceEEEEECC-CeEEEEeCCCcCcccc-----------cCcccCCCCCCEEEEEEEEeeCCCCe
Q 000227 758 HIHPNSVVHGYVCNIIETGCFVRFLG-RLTGFAPRSKAVDGQR-----------ADLSKTYYVGQSVRSNILDVNSETGR 825 (1826)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~GvfV~f~~-gl~Glv~~s~l~~~~~-----------~~~~~~f~vGq~V~~~V~~id~e~~r 825 (1826)
.-++|+.+.|.|++|++||+||++.+ ++.||+|.+++++++. ......|++||.|+|+|.++|.++++
T Consensus 624 ~~~iG~~~~g~V~~v~~fGifV~L~~~~~eGlvhis~l~~d~~~~d~~~~~l~g~~~~~~~~lGd~V~Vkv~~vd~~~~~ 703 (709)
T TIGR02063 624 SEKIGEEFEGVISGVTSFGLFVELENNTIEGLVHISTLKDDYYVFDEKGLALVGERTGKVFRLGDRVKVRVVKADLDTGK 703 (709)
T ss_pred hccCCcEEEEEEEEEEeCCEEEEecCCceEEEEEeeecCCCcEEEcccceEEEeccCCcEECCCCEEEEEEEEEecccCe
Confidence 34679999999999999999999998 8999999999986432 23346799999999999999999999
Q ss_pred EEEEe
Q 000227 826 ITLSL 830 (1826)
Q Consensus 826 l~LSl 830 (1826)
+.|++
T Consensus 704 I~~~l 708 (709)
T TIGR02063 704 IDFEL 708 (709)
T ss_pred EEEEE
Confidence 99986
No 166
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.68 E-value=0.00055 Score=85.90 Aligned_cols=134 Identities=17% Similarity=0.110 Sum_probs=111.4
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHH
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e 1744 (1826)
.++..++...|++++..+|++...|+.++..+.+.++.++|.+.++++++.-+. ....+|..+.+.-...| ..+
T Consensus 193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~~l~~~~~~~g--~~~ 266 (389)
T PRK11788 193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE----YLSEVLPKLMECYQALG--DEA 266 (389)
T ss_pred CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh----hHHHHHHHHHHHHHHcC--CHH
Confidence 355667888999999999999999999999999999999999999999864221 11246777778888889 779
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 000227 1745 AVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFH 1804 (1826)
Q Consensus 1745 ~~~~vf~~a~~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~ 1804 (1826)
.+...|+++++..+...++..++.+|.+.|++++|.++|+++++.+|....++..+..++
T Consensus 267 ~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 267 EGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 999999999987666677799999999999999999999999999998766554444443
No 167
>PRK12370 invasion protein regulator; Provisional
Probab=97.67 E-value=0.00056 Score=89.98 Aligned_cols=138 Identities=11% Similarity=-0.028 Sum_probs=108.4
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHH
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e 1744 (1826)
.++..++...|++++..+|++...|..+....+.+|+.++|...+++|++.-|.... ...|.+.+ -...| ..+
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~---~~~~~~~~--~~~~g--~~e 423 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA---AGITKLWI--TYYHT--GID 423 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh---hHHHHHHH--HHhcc--CHH
Confidence 456777889999999999999999999999999999999999999999876554321 12222222 22357 668
Q ss_pred HHHHHHHHHHhc--CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1745 AVVKVFQRALQY--CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1745 ~~~~vf~~a~~~--~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
.|...|++++.. ++....|..++.+|...|++++|++.|+++....|.+...|...+..++..+.
T Consensus 424 eA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 424 DAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH
Confidence 899999999854 34566788888899999999999999999888888888888888888887775
No 168
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.66 E-value=0.00072 Score=78.70 Aligned_cols=145 Identities=13% Similarity=0.118 Sum_probs=107.6
Q ss_pred cccCCCCCHHHHHHHHHhCCCch---hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHH----
Q 000227 1664 LEKDAPRTPDEFERLVRSSPNSS---FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN---- 1736 (1826)
Q Consensus 1664 ~~~~~p~s~~~fer~l~~~p~ss---~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~---- 1736 (1826)
..++..++...|++++..+|++. ..|+..+..+.++++++.|...++++++.-|.......--.+.+.+.++.
T Consensus 45 ~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~ 124 (235)
T TIGR03302 45 DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV 124 (235)
T ss_pred HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc
Confidence 34566677899999999999886 57888899999999999999999999976553332111011222222221
Q ss_pred --HcCCCCHHHHHHHHHHHHh-cCCcHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHHHcCCC---
Q 000227 1737 --EYGNPPEEAVVKVFQRALQ-YCDPKKVH-----------------LALLGLYERTEQNKLADELLYKMIKKFKHS--- 1793 (1826)
Q Consensus 1737 --~~G~~~~e~~~~vf~~a~~-~~~~~kv~-----------------~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~--- 1793 (1826)
..| ..+.|...|++++. ++++...| ..++.+|.+.|+++.|...|+++++.||.+
T Consensus 125 ~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 202 (235)
T TIGR03302 125 DRDQT--AAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPAT 202 (235)
T ss_pred cCCHH--HHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcch
Confidence 125 56889999999995 45443332 355678889999999999999999999865
Q ss_pred HHHHHHHHHHHHhcccc
Q 000227 1794 CKVIIELLSFHFTSILS 1810 (1826)
Q Consensus 1794 ~~~w~~~~~~~~~~~~~ 1810 (1826)
...|...+..+...|+.
T Consensus 203 ~~a~~~l~~~~~~lg~~ 219 (235)
T TIGR03302 203 EEALARLVEAYLKLGLK 219 (235)
T ss_pred HHHHHHHHHHHHHcCCH
Confidence 58999999999887764
No 169
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.66 E-value=0.00051 Score=91.76 Aligned_cols=132 Identities=11% Similarity=0.012 Sum_probs=114.1
Q ss_pred CHHHHHHHHHh---CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000227 1671 TPDEFERLVRS---SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1826)
Q Consensus 1671 s~~~fer~l~~---~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~ 1747 (1826)
+..-|++++.. .|+....|.....+++..++.++|...+++|+..-|.. .+.|+.+..+-...| +.+.|.
T Consensus 313 A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~-----~~~~~~la~~~~~~g--~~~eA~ 385 (615)
T TIGR00990 313 AARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRV-----TQSYIKRASMNLELG--DPDKAE 385 (615)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHHCC--CHHHHH
Confidence 35668888865 48888899999999999999999999999998754422 346887777777899 889999
Q ss_pred HHHHHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1748 KVFQRALQY-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1748 ~vf~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
..|++|++. ++...+|..++.+|...|++++|.+.|+++++..|.....|+..+..++.+|.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC
Confidence 999999965 45789999999999999999999999999999999999999999999887764
No 170
>cd05701 S1_Rrp5_repeat_hs10 S1_Rrp5_repeat_hs10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 10 (hs10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=97.65 E-value=5.6e-05 Score=65.96 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=54.4
Q ss_pred CCEEEEEEEEEEccEEEEEecCCCceEEEEeccccc-ccCCCcccccCCCEEEEEEEeec
Q 000227 971 HQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYN-TQKFPQKQFLNGQSVIATVMALP 1029 (1826)
Q Consensus 971 G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~n-~~~~~~~~f~vGq~v~a~V~~~~ 1029 (1826)
++..+|.|+++.++|++||+.+.++++++.-.+|+| ++++.++++++||++.+.|....
T Consensus 1 ~S~htA~VQh~~kdfAvvSL~~t~~L~a~p~~sHLNdtfrf~seklkvG~~l~v~lk~~~ 60 (69)
T cd05701 1 DSRHTAIVQHADKDFAIVSLATTGDLAAFPTRSHLNDTFRFDSEKLSVGQCLDVTLKDPN 60 (69)
T ss_pred CCccchhhhhhhhceEEEEeeccccEEEEEchhhccccccccceeeeccceEEEEEecCc
Confidence 356789999999999999999999999999999999 88999999999999999988764
No 171
>PRK12370 invasion protein regulator; Provisional
Probab=97.64 E-value=0.00047 Score=90.69 Aligned_cols=135 Identities=9% Similarity=-0.102 Sum_probs=113.5
Q ss_pred CCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000227 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1826)
Q Consensus 1668 ~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~ 1747 (1826)
..++...|++++..+|++...|..++...+..++.++|...++||++.-|..- ..|..+..+-...| ..+.|.
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~-----~a~~~lg~~l~~~G--~~~eAi 392 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA-----DIKYYYGWNLFMAG--QLEEAL 392 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCC--CHHHHH
Confidence 56778899999999999999999999999999999999999999997655432 36777777777889 779999
Q ss_pred HHHHHHHhcCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhccc
Q 000227 1748 KVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1748 ~vf~~a~~~~~~-~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~-~~~~~~w~~~~~~~~~~~~ 1809 (1826)
..|++|++.++. ...+..++.++...|++++|.+.|+++++.. |..+..|..++.++...|.
T Consensus 393 ~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~ 456 (553)
T PRK12370 393 QTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK 456 (553)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC
Confidence 999999977654 3445555666777899999999999999886 7788889999999877765
No 172
>TIGR01953 NusA transcription termination factor NusA. This model describes NusA, or N utilization substance protein A, a bacterial transcription termination factor. It binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. It is named for the interaction in E. coli of phage lambda antitermination protein N with the N-utilization substance, consisting of NusA, NusB, NusE (ribosomal protein S10), and nusG. This model represents a region of NusA shared in all bacterial forms, and including an S1 (pfam00575) and a KH (pfam00013) RNA binding domains. Proteobacterial forms have an additional C-terminal region, not included in this model, with two repeats of 50-residue domain rich in acidic amino acids.
Probab=97.61 E-value=7.6e-05 Score=90.29 Aligned_cols=107 Identities=18% Similarity=0.361 Sum_probs=78.8
Q ss_pred CcCCCCEEEEEEEEEeCCeE-EEEecchhhc----cc-hhhccccccccCCcEEEEEEEEEecce-EEEEEcCCeEEEEe
Q 000227 542 KFKVGAELVFRVLGVKSKRI-TVTHKKTLVK----SK-LAILSSYAEATDRLITHGWITKIEKHG-CFVRFYNGVQGFAP 614 (1826)
Q Consensus 542 ~fkvG~~Vk~rVL~v~~~~i-~LSlK~~Lv~----~~-~~~~~s~~~~~~G~~~~G~V~~i~~~G-~~V~~~~gv~G~vp 614 (1826)
.+++|+.+++.+-.-+-+|+ ..+.|+.+.. .. ..++..|.+ +.|+++.|+|.++.+.| ++|++ |++.||+|
T Consensus 83 ~~~vGD~I~~~I~~~~fgR~aaq~aKqvi~Qkire~ere~i~~ey~~-k~GeiV~G~V~~v~~~g~v~Vdi-G~~ea~LP 160 (341)
T TIGR01953 83 DVQIGDEVKKEIPPENFGRIAAQTAKQVILQKIREAERERVYDEFSS-KEGEIISGTVKRVNRRGNLYVEL-GKTEGILP 160 (341)
T ss_pred ccccCCEEEEEecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCEEEEEEEEEecCCcEEEEE-CCeEEEec
Confidence 58999999987743333333 3344443322 11 123344543 58999999999999988 69999 79999999
Q ss_pred CcccCCCCCCCCCCCccCCCEEEEEEEEEccCC--CEEEEEEee
Q 000227 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS--RRINLSFMM 656 (1826)
Q Consensus 615 ~sel~~~~~~~~~~~~~vGq~V~vrVl~vd~~~--~ri~lS~k~ 656 (1826)
.+++. |.+.|++|+.++|.|++++... ..+.||.+.
T Consensus 161 ~~E~i------p~E~~~~Gd~ik~~V~~V~~~~kg~qIivSRt~ 198 (341)
T TIGR01953 161 KKEQI------PGEKFRIGDRIKAYVYEVRKTAKGPQIILSRTH 198 (341)
T ss_pred HHHcC------CCcCCCCCCEEEEEEEEEEcCCCCCeEEEEeCc
Confidence 99996 4467999999999999999554 579999864
No 173
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.60 E-value=0.0006 Score=94.35 Aligned_cols=138 Identities=13% Similarity=0.056 Sum_probs=101.4
Q ss_pred cCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHH
Q 000227 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~ 1745 (1826)
++..++...|++++..+|++...|..++....+.++.++|+..++++++.-+. ....|..+..+-...| +.+.
T Consensus 513 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~--~~~~ 585 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-----EIEPALALAQYYLGKG--QLKK 585 (899)
T ss_pred CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----chhHHHHHHHHHHHCC--CHHH
Confidence 34555667777777777777777777777777777777777777777654322 2346777777777777 6688
Q ss_pred HHHHHHHHHh-cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 000227 1746 VVKVFQRALQ-YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILS 1810 (1826)
Q Consensus 1746 ~~~vf~~a~~-~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~ 1810 (1826)
+..+|++++. .++...+|..++.+|.+.|++++|.+.|+++++..|.++..|..++.++...++.
T Consensus 586 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 586 ALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 8888888874 4556778888888888888888888888888888887888888888887776654
No 174
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.58 E-value=0.00058 Score=83.52 Aligned_cols=130 Identities=18% Similarity=0.352 Sum_probs=106.2
Q ss_pred HHHHHHHHH-hCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhh-HHHHHHHHHHHHHHc-CCCCHHHHHH
Q 000227 1672 PDEFERLVR-SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE-KLNIWVAYFNLENEY-GNPPEEAVVK 1748 (1826)
Q Consensus 1672 ~~~fer~l~-~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e-~~niW~a~l~lE~~~-G~~~~e~~~~ 1748 (1826)
...+++++- .+-+-+.+|++||.|-.+...+..||.|+.+| |++.- .-.|++|.+=||... + +.+.|-.
T Consensus 351 ~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka------R~~~r~~hhVfVa~A~mEy~csk--D~~~Afr 422 (656)
T KOG1914|consen 351 HEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKA------REDKRTRHHVFVAAALMEYYCSK--DKETAFR 422 (656)
T ss_pred HHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHH------hhccCCcchhhHHHHHHHHHhcC--ChhHHHH
Confidence 344555542 23456789999999999999999999999999 44322 125999999999854 5 7899999
Q ss_pred HHHHHH-hcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-c--CCCHHHHHHHHHHHHhccc
Q 000227 1749 VFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKK-F--KHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1749 vf~~a~-~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk-~--~~~~~~w~~~~~~~~~~~~ 1809 (1826)
+|+-.+ .|.|....-+.|+.++...++-.+||-+|++.++. . -++..+|-++..|+..-|+
T Consensus 423 IFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 423 IFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 999999 67888888899999999999999999999999998 2 3467999999999765543
No 175
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.00066 Score=82.69 Aligned_cols=133 Identities=15% Similarity=0.199 Sum_probs=97.4
Q ss_pred CHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHH--------------------HHHHHHHhhcccchhhhHHHHHHH
Q 000227 1671 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR--------------------SIAERALQTINIREENEKLNIWVA 1730 (1826)
Q Consensus 1671 s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR--------------------~i~erAl~~i~~re~~e~~niW~a 1730 (1826)
.+.+||--|...-.+=.=.|+|+.||..+.++=.=| .+.+||+..-+. -.++|..
T Consensus 36 ~Rr~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~-----D~~lW~~ 110 (568)
T KOG2396|consen 36 KRRDFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNG-----DVKLWLS 110 (568)
T ss_pred HHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCC-----CHHHHHH
Confidence 345555443333333334688888888766532222 244555443322 2469999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 000227 1731 YFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERT-EQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSI 1808 (1826)
Q Consensus 1731 ~l~lE~~~G~~~~e~~~~vf~~a~~~~-~~~kv~~~~~~i~~~~-~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~ 1808 (1826)
|+++-..-+ ++-...++|..+|+++ +...+|+..|..+..- -+++.||.+|.++++.+|.++++|..|-++++...
T Consensus 111 yi~f~kk~~--~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~ 188 (568)
T KOG2396|consen 111 YIAFCKKKK--TYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYA 188 (568)
T ss_pred HHHHHHHhc--chhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Confidence 999999998 6689999999999775 5899999999975444 45999999999999999999999999999987655
Q ss_pred cc
Q 000227 1809 LS 1810 (1826)
Q Consensus 1809 ~~ 1810 (1826)
.+
T Consensus 189 ~K 190 (568)
T KOG2396|consen 189 EK 190 (568)
T ss_pred HH
Confidence 43
No 176
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.55 E-value=0.001 Score=92.00 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=87.8
Q ss_pred cCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHH
Q 000227 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~ 1745 (1826)
++..++...|++++..+|.+...|+..+....+.++.++|..+++++++..+.. ..+|..+..+-...| +.+.
T Consensus 547 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~--~~~~ 619 (899)
T TIGR02917 547 GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDS-----PEAWLMLGRAQLAAG--DLNK 619 (899)
T ss_pred CCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcC--CHHH
Confidence 344455666667766777777777777777777777777777777766543322 235666666666666 5566
Q ss_pred HHHHHHHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1746 VVKVFQRALQY-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1746 ~~~vf~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
|...|+++++. ++....|..++.+|.+.|++++|.++|+++++.+|.....|..++..+...+.
T Consensus 620 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 77777776643 44556666666666667777777777777776666666666666666655443
No 177
>PRK12327 nusA transcription elongation factor NusA; Provisional
Probab=97.54 E-value=0.00013 Score=88.85 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=86.4
Q ss_pred ccccCCCCEEEEEEEeecCCCeEEEeccccccccccc--CCCccccC--CCCCEEEEEEEEEeeceEEEEECCCeEEEEe
Q 000227 715 KSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINSAQQ--LPSDASHI--HPNSVVHGYVCNIIETGCFVRFLGRLTGFAP 790 (1826)
Q Consensus 715 ~~~lk~G~~i~~vl~id~~~~~v~ls~K~sl~~~~~~--i~~~~~~~--~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~ 790 (1826)
....++||.++--+....-++....++|+.+...-.. --.-|+++ +.|++++|+|.++.+.|+||.+ |++.|++|
T Consensus 84 ~~~~~vGD~i~~~I~~~~fgR~aaq~akqvI~Qkire~ere~v~~ef~~k~GeiV~G~V~~~~~~~~~Vdl-g~vEa~LP 162 (362)
T PRK12327 84 NPAYELGDVIEIEVTPKDFGRIAAQTAKQVIMQRLREAEREIIYNEFSEREGDIVTGVVQRRDNRFVYVNL-GKIEAVLP 162 (362)
T ss_pred CccccCCCEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEEEeCCcEEEEe-CCeEEEec
Confidence 3457789988732222222344555666666543221 01124556 7899999999999999999999 66999999
Q ss_pred CCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCe--EEEEecccccCCCcchhhHHHHHHH
Q 000227 791 RSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGR--ITLSLKQSCCSSTDASFMQEHFLLE 850 (1826)
Q Consensus 791 ~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~r--l~LSlk~~~~~~~~~~~~~~~~~~~ 850 (1826)
++++. |.+.|++||.++|.|.+++.+.++ +.||. +++.|+..+|...
T Consensus 163 ~~E~i------p~e~~~~Gd~Ika~V~~V~~~~kgp~IivSR-------t~p~~v~~Lfe~E 211 (362)
T PRK12327 163 PAEQI------PGETYKHGDRIKVYVVKVEKTTKGPQIFVSR-------THPGLVKRLFELE 211 (362)
T ss_pred HHHcC------CCCCCCCCCEEEEEEEEEecCCCCCeEEEEe-------CCHHHHHHHHHHh
Confidence 88774 467899999999999999977654 66664 4567777777743
No 178
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.52 E-value=0.001 Score=89.28 Aligned_cols=137 Identities=12% Similarity=-0.010 Sum_probs=91.9
Q ss_pred cCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHH----HHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCC
Q 000227 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEK----ARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1741 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~k----AR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~ 1741 (1826)
++..++...|++++..+|++...|..++...++.|+.+. |+..+++|++.-|.. ..+|..+..+-...|
T Consensus 226 g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~l~~~g-- 298 (656)
T PRK15174 226 GKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN-----VRIVTLYADALIRTG-- 298 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHCC--
Confidence 344556667777777777777777777777777777664 677777777543321 236777777777777
Q ss_pred CHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1742 PEEAVVKVFQRALQ-YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1742 ~~e~~~~vf~~a~~-~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
..+.|...|++|++ .++...+|..++.+|.+.|++++|.+.|++++...|.....+...+..+...|.
T Consensus 299 ~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~ 367 (656)
T PRK15174 299 QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGK 367 (656)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCC
Confidence 66777777777774 445566777777777777777777777777777777665555555555555443
No 179
>PRK12327 nusA transcription elongation factor NusA; Provisional
Probab=97.51 E-value=0.00011 Score=89.47 Aligned_cols=106 Identities=15% Similarity=0.285 Sum_probs=78.7
Q ss_pred CcCCCCEEEEEEEEEe-CCeEEEEecchhhccch-----hhccccccccCCcEEEEEEEEEecceEEEEEcCCeEEEEeC
Q 000227 542 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKSKL-----AILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPR 615 (1826)
Q Consensus 542 ~fkvG~~Vk~rVL~v~-~~~i~LSlK~~Lv~~~~-----~~~~s~~~~~~G~~~~G~V~~i~~~G~~V~~~~gv~G~vp~ 615 (1826)
..++|+.++..+-..+ .+....+.|+.+...-. .++..|. -+.|+++.|+|.++.++|+||++ |++.||+|.
T Consensus 86 ~~~vGD~i~~~I~~~~fgR~aaq~akqvI~Qkire~ere~v~~ef~-~k~GeiV~G~V~~~~~~~~~Vdl-g~vEa~LP~ 163 (362)
T PRK12327 86 AYELGDVIEIEVTPKDFGRIAAQTAKQVIMQRLREAEREIIYNEFS-EREGDIVTGVVQRRDNRFVYVNL-GKIEAVLPP 163 (362)
T ss_pred cccCCCEEEEecCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCEEEEEEEEEeCCcEEEEe-CCeEEEecH
Confidence 5889999998775442 33344455555544211 2233332 16899999999999999999999 679999999
Q ss_pred cccCCCCCCCCCCCccCCCEEEEEEEEEccCCC--EEEEEEe
Q 000227 616 SELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR--RINLSFM 655 (1826)
Q Consensus 616 sel~~~~~~~~~~~~~vGq~V~vrVl~vd~~~~--ri~lS~k 655 (1826)
+++. |.+.|++|+.++|.|++++...+ .+.||..
T Consensus 164 ~E~i------p~e~~~~Gd~Ika~V~~V~~~~kgp~IivSRt 199 (362)
T PRK12327 164 AEQI------PGETYKHGDRIKVYVVKVEKTTKGPQIFVSRT 199 (362)
T ss_pred HHcC------CCCCCCCCCEEEEEEEEEecCCCCCeEEEEeC
Confidence 8884 45789999999999999996654 5888874
No 180
>COG1095 RPB7 DNA-directed RNA polymerase, subunit E' [Transcription]
Probab=97.49 E-value=0.00025 Score=76.57 Aligned_cols=75 Identities=24% Similarity=0.458 Sum_probs=63.3
Q ss_pred CCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccC-C----------CCccCCCCcEEEEEEEEEeCCC-----C
Q 000227 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-S----------PEKEFPIGKLVAGRVLSVEPLS-----K 1441 (1826)
Q Consensus 1378 ~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~-~----------~~~~f~vGq~V~~kVl~vd~e~-----~ 1441 (1826)
.|++|.|.|+++.++|+||.+| -++||+|.+.+.|.|+. | -+..|.+|+.|++||++++... .
T Consensus 81 ~gEVV~GeVv~~~~~G~fV~ig-p~dglvh~sqi~dd~~~~d~~~~~~~g~~tk~~i~~gd~VR~RIv~~s~~~~~~~~~ 159 (183)
T COG1095 81 RGEVVEGEVVEVVEFGAFVRIG-PLDGLVHVSQIMDDYIDYDEKNKVLIGEETKRVLKVGDKVRARIVGVSLKSRRPRES 159 (183)
T ss_pred cccEEEEEEEEEeecceEEEec-cccccccHhhccCcccccCcccceeeecccceEEecCCEEEEEEEEEecccCccccc
Confidence 5899999999999999999999 79999999999998542 1 2237899999999999887655 5
Q ss_pred eEEEEEeccccc
Q 000227 1442 RVEVTLKTSDSR 1453 (1826)
Q Consensus 1442 rI~lSlk~s~~~ 1453 (1826)
+|.+|+|+.-..
T Consensus 160 ~I~lTmrq~~LG 171 (183)
T COG1095 160 KIGLTMRQPGLG 171 (183)
T ss_pred eEEEEeccccCC
Confidence 788999886554
No 181
>PRK11642 exoribonuclease R; Provisional
Probab=97.47 E-value=0.00031 Score=94.52 Aligned_cols=72 Identities=25% Similarity=0.397 Sum_probs=63.9
Q ss_pred CCCCEEEEEEEEEecceEEEEeCCC-eEEEEEccccCCCc-cC----------CCCccCCCCcEEEEEEEEEeCCCCeEE
Q 000227 1377 SPNMIVQGYVKNVTSKGCFIMLSRK-LDAKVLLSNLSDGY-VE----------SPEKEFPIGKLVAGRVLSVEPLSKRVE 1444 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~~GvFV~l~~~-v~g~v~iselsd~~-v~----------~~~~~f~vGq~V~~kVl~vd~e~~rI~ 1444 (1826)
++|+++.|.|++|+++|+||+|.+. ++|+||+++|.++| .- +....|++||.|+++|+++|.++++|.
T Consensus 642 ~iGe~f~G~Is~V~~fGifVeL~~~~vEGlV~vs~L~~d~y~~d~~~~~L~g~~~~~~~~lGD~V~VkV~~vD~~~rkI~ 721 (813)
T PRK11642 642 QVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYYRFDQVGQRLIGESSGQTYRLGDRVEVRVEAVNMDERKID 721 (813)
T ss_pred cCCcEEEEEEEEeecCceEEEECCCCeeeeEEEeecCCcceEecchheEEecccCCcEECCCCEEEEEEEEeecCCCeEE
Confidence 6899999999999999999999875 99999999998753 22 234679999999999999999999999
Q ss_pred EEEe
Q 000227 1445 VTLK 1448 (1826)
Q Consensus 1445 lSlk 1448 (1826)
+++-
T Consensus 722 f~l~ 725 (813)
T PRK11642 722 FSLI 725 (813)
T ss_pred EEEe
Confidence 9984
No 182
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.47 E-value=0.0016 Score=93.04 Aligned_cols=140 Identities=14% Similarity=0.089 Sum_probs=115.0
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHH-------HHHHHH--HHHH
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-------NIWVAY--FNLE 1735 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~-------niW~a~--l~lE 1735 (1826)
.++..++...|++++..+|++..+|...+..+++.++.++|+..+++|++.-+......+| ..|..+ ....
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 5667788999999999999999999999999999999999999999999865533221222 123322 2334
Q ss_pred HHcCCCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 000227 1736 NEYGNPPEEAVVKVFQRALQY-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFT 1806 (1826)
Q Consensus 1736 ~~~G~~~~e~~~~vf~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~ 1806 (1826)
...| +.+.|...|++|++. ++....|..++.+|...|++++|.+.|+++++..|.....|..++.++..
T Consensus 362 ~~~g--~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~ 431 (1157)
T PRK11447 362 LKAN--NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQ 431 (1157)
T ss_pred HHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 4678 779999999999955 55778899999999999999999999999999999999999888887643
No 183
>TIGR00358 3_prime_RNase VacB and RNase II family 3'-5' exoribonucleases. This model is defined to identify a pair of paralogous 3-prime exoribonucleases in E. coli, plus the set of proteins apparently orthologous to one or the other in other eubacteria. VacB was characterized originally as required for the expression of virulence genes, but is now recognized as the exoribonuclease RNase R (Rnr). Its paralog in E. coli and H. influenzae is designated exoribonuclease II (Rnb). Both are involved in the degradation of mRNA, and consequently have strong pleiotropic effects that may be difficult to disentangle. Both these proteins share domain-level similarity (RNB, S1) with a considerable number of other proteins, and full-length similarity scoring below the trusted cutoff to proteins associated with various phenotypes but uncertain biochemistry; it may be that these latter proteins are also 3-prime exoribonucleases.
Probab=97.46 E-value=0.00034 Score=93.03 Aligned_cols=71 Identities=24% Similarity=0.380 Sum_probs=63.3
Q ss_pred CCCCEEEEEEEEEecceEEEEeC-CCeEEEEEccccCCCc-c----------CCCCccCCCCcEEEEEEEEEeCCCCeEE
Q 000227 1377 SPNMIVQGYVKNVTSKGCFIMLS-RKLDAKVLLSNLSDGY-V----------ESPEKEFPIGKLVAGRVLSVEPLSKRVE 1444 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~~GvFV~l~-~~v~g~v~iselsd~~-v----------~~~~~~f~vGq~V~~kVl~vd~e~~rI~ 1444 (1826)
++|+++.|.|++++++|+||+|. .+++|+||++++.|+| . ++....|++||.|+++|+++|.++++|.
T Consensus 571 ~iG~~~~g~I~~v~~~GifV~L~~~~veGlV~~s~l~~d~y~~d~~~~~l~g~~~~~~~~lGD~V~Vki~~vd~~~~~I~ 650 (654)
T TIGR00358 571 KVGTEFSGEISSVTRFGMFVRLDDNGIDGLIHISTLHNDYYVFDQEKMALIGKGTGKVYRIGDRVTVKLTEVNMETRSII 650 (654)
T ss_pred CCCcEEEEEEEeEEcCcEEEEecCCceEEEEEeEeCCCcceEEeccccEEEeccCCcEECCCCEEEEEEEEEecccCeEE
Confidence 57999999999999999999998 7899999999999864 1 2344679999999999999999999999
Q ss_pred EEE
Q 000227 1445 VTL 1447 (1826)
Q Consensus 1445 lSl 1447 (1826)
+++
T Consensus 651 f~l 653 (654)
T TIGR00358 651 FEL 653 (654)
T ss_pred EEE
Confidence 876
No 184
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.43 E-value=0.0013 Score=80.42 Aligned_cols=114 Identities=18% Similarity=0.195 Sum_probs=96.7
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHH-cCCCCHHHHHHHH
Q 000227 1672 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE-YGNPPEEAVVKVF 1750 (1826)
Q Consensus 1672 ~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~-~G~~~~e~~~~vf 1750 (1826)
...|||||..||+|..||+.||+.-.+.-+-++..+--++++..-+. ...+|++||++... +.+++.+.++.+|
T Consensus 51 lsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-----~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 51 LSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-----SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-----ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 57899999999999999999999999999999999999999876543 34699999999887 5545789999999
Q ss_pred HHHHhcC-------------------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc
Q 000227 1751 QRALQYC-------------------DPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1790 (1826)
Q Consensus 1751 ~~a~~~~-------------------~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~ 1790 (1826)
.++++.. .--.++++++.+..++|-.+.|-.+++..+...
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 9999621 124578888888999999999999999998754
No 185
>PRK08563 DNA-directed RNA polymerase subunit E'; Provisional
Probab=97.43 E-value=0.0005 Score=77.26 Aligned_cols=77 Identities=19% Similarity=0.442 Sum_probs=64.9
Q ss_pred CCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccC-----------CCCccCCCCcEEEEEEEEEeCCCC----
Q 000227 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVE-----------SPEKEFPIGKLVAGRVLSVEPLSK---- 1441 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~-----------~~~~~f~vGq~V~~kVl~vd~e~~---- 1441 (1826)
..|+++.|.|++++++|+||+++ .++|+++.+++.+++.. +....|++|+.|+++|++++.+++
T Consensus 80 ~~GEVv~g~V~~v~~~Gi~V~lg-~~~g~v~~~~l~~~~~~~d~~~~~~~~~~~~~~i~~Gd~VrvrV~~v~~~~~~~~~ 158 (187)
T PRK08563 80 ELQEVVEGEVVEVVEFGAFVRIG-PVDGLLHISQIMDDYISYDPKNGRLIGKESKRVLKVGDVVRARIVAVSLKERRPRG 158 (187)
T ss_pred cCCCEEEEEEEEEEccEEEEEEe-CceEEEEcHHcCCCceEEccccceEEEccCCeEEcCCCEEEEEEEEEEcccCCCCC
Confidence 46999999999999999999999 59999999999876432 235678999999999999987653
Q ss_pred -eEEEEEecccccc
Q 000227 1442 -RVEVTLKTSDSRT 1454 (1826)
Q Consensus 1442 -rI~lSlk~s~~~~ 1454 (1826)
+|.+|++.....+
T Consensus 159 ~~I~ls~~~~~LG~ 172 (187)
T PRK08563 159 SKIGLTMRQPGLGK 172 (187)
T ss_pred CEEEEEecCCCCCc
Confidence 8999998866544
No 186
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.42 E-value=0.0027 Score=82.36 Aligned_cols=123 Identities=15% Similarity=0.183 Sum_probs=104.8
Q ss_pred cccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCH
Q 000227 1664 LEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1743 (1826)
Q Consensus 1664 ~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~ 1743 (1826)
..++..++...+...+..+|+....|-.-+.-+=+.|+++||-.-.--|--..+..- -.|+.+..|=..+| +.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~-----e~W~~ladls~~~~--~i 223 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY-----ELWKRLADLSEQLG--NI 223 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHhcc--cH
Confidence 356677777888888899999999999999999999999999888777743333222 37999999999999 88
Q ss_pred HHHHHHHHHHHhcC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC
Q 000227 1744 EAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS 1793 (1826)
Q Consensus 1744 e~~~~vf~~a~~~~-~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~ 1793 (1826)
++|+-.|.||++.+ +.++++...+.+|.+.|++.+|-+-|.+++...|..
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch
Confidence 99999999999875 568999999999999999999999999999999843
No 187
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.37 E-value=0.0036 Score=67.35 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=90.9
Q ss_pred CCCCCHH-HHHHHHHhCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCC
Q 000227 1667 DAPRTPD-EFERLVRSSPNS---SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1742 (1826)
Q Consensus 1667 ~~p~s~~-~fer~l~~~p~s---s~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~ 1742 (1826)
..+.... .|++++..+|++ ...++..+...+..|++++|.+.++.++..-+... -+.-.|+.+..+....| .
T Consensus 25 ~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~--l~~~a~l~LA~~~~~~~--~ 100 (145)
T PF09976_consen 25 GDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE--LKPLARLRLARILLQQG--Q 100 (145)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH--HHHHHHHHHHHHHHHcC--C
Confidence 3444444 499999999999 66788888999999999999999999987553222 12234555556666889 7
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000227 1743 EEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMI 1787 (1826)
Q Consensus 1743 ~e~~~~vf~~a~~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~ 1787 (1826)
.+.+..+++......-...++...+.||...|++++|++.|++++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 799999997754444456788899999999999999999999874
No 188
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=97.37 E-value=0.0027 Score=90.81 Aligned_cols=141 Identities=9% Similarity=0.036 Sum_probs=112.7
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHH-------------------
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL------------------- 1725 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~------------------- 1725 (1826)
.++..++..-|++++..+|++...|+..+...++.++.++|++.+++|++.-+.... ...
T Consensus 364 ~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~-a~~~L~~l~~~~~~~~A~~~l~ 442 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN-AVRGLANLYRQQSPEKALAFIA 442 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCHHHHHHHHH
Confidence 456777889999999999999999999999999999999999999999875443211 000
Q ss_pred -------------------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000227 1726 -------------------NIWVAYFNLENEYGNPPEEAVVKVFQRALQY-CDPKKVHLALLGLYERTEQNKLADELLYK 1785 (1826)
Q Consensus 1726 -------------------niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~ 1785 (1826)
..|....++-..-| +.+.|...|++|++. ++...+|..++.+|.+.|++++|..+|++
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g--~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQG--KWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11122222333468 779999999999954 56788999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcc
Q 000227 1786 MIKKFKHSCKVIIELLSFHFTSI 1808 (1826)
Q Consensus 1786 ~~kk~~~~~~~w~~~~~~~~~~~ 1808 (1826)
+++..|.++..|..++.++...+
T Consensus 521 al~~~P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 521 LAQQKPNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHcCCCCHHHHHHHHHHHHhCC
Confidence 99999999999998887765443
No 189
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.37 E-value=0.0019 Score=79.18 Aligned_cols=133 Identities=21% Similarity=0.283 Sum_probs=108.3
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhhccc-----------------c--
Q 000227 1673 DEFERLVRSSPNSSFVWIKYMAFMLSMAD--------------VEKARSIAERALQTINI-----------------R-- 1719 (1826)
Q Consensus 1673 ~~fer~l~~~p~ss~lWi~y~~f~l~~~e--------------i~kAR~i~erAl~~i~~-----------------r-- 1719 (1826)
=.||..++.-+-+..+|..|..|-.+.++ -++|+++.|||+..... .
T Consensus 266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n 345 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN 345 (656)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc
Confidence 35788889999999999999999999988 89999999999776521 0
Q ss_pred ------hhhhHH---------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHH-HHcCChHHHHHH
Q 000227 1720 ------EENEKL---------NIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLY-ERTEQNKLADEL 1782 (1826)
Q Consensus 1720 ------e~~e~~---------niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~-~~~kv~~~~~~i~-~~~~~~~~a~~~ 1782 (1826)
+..+++ =+|+.|+|+-..-. -..+||.+|.+|..-. ..+.||...|-++ ..+++.+-|..+
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~e--GlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrI 423 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAE--GLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRI 423 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhh--hHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHH
Confidence 001111 26999999998887 4599999999999543 5578998888875 567889999999
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhc
Q 000227 1783 LYKMIKKFKHSCKVIIELLSFHFTS 1807 (1826)
Q Consensus 1783 ~~~~~kk~~~~~~~w~~~~~~~~~~ 1807 (1826)
|+-++++|+.++..=..|+.||..-
T Consensus 424 FeLGLkkf~d~p~yv~~YldfL~~l 448 (656)
T KOG1914|consen 424 FELGLKKFGDSPEYVLKYLDFLSHL 448 (656)
T ss_pred HHHHHHhcCCChHHHHHHHHHHHHh
Confidence 9999999999999999999987543
No 190
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.30 E-value=0.0043 Score=82.60 Aligned_cols=130 Identities=13% Similarity=0.050 Sum_probs=110.5
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHH
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e 1744 (1826)
-+.-+++..-+++++...|++...|+.|+.--.+++.+++|+..++|++..-|.+ .+.-..+..+=...| .+|
T Consensus 99 ~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~-----~~~~~~~a~~l~~~g--~~~ 171 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS-----AREILLEAKSWDEIG--QSE 171 (694)
T ss_pred cCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC-----HHHHHHHHHHHHHhc--chH
Confidence 3568888999999999999999999999999999999999999999999765544 335566666667789 779
Q ss_pred HHHHHHHHHH-hcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHH
Q 000227 1745 AVVKVFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELL 1801 (1826)
Q Consensus 1745 ~~~~vf~~a~-~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~ 1801 (1826)
.|..+|++++ +.++...+|+.++..++..|+.+.|...|+++++.+..-.+-+..|+
T Consensus 172 ~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 172 QADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 9999999999 66688999999999999999999999999999999965556555544
No 191
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.28 E-value=0.0043 Score=85.70 Aligned_cols=140 Identities=14% Similarity=0.102 Sum_probs=80.8
Q ss_pred cCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHH
Q 000227 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~ 1745 (1826)
++.+++...|++++..+|+ ...|+.++....++++.+.|...+++|+..-|..- .+|..+-.+-...| ..+.
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~-----~a~~nLG~aL~~~G--~~ee 661 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS-----NYQAALGYALWDSG--DIAQ 661 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCC--CHHH
Confidence 4455556666666666665 56666666666666666666666666665433221 24554444445556 5566
Q ss_pred HHHHHHHHHh-cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHH-----HHHHHHHHHhccccccC
Q 000227 1746 VVKVFQRALQ-YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV-----IIELLSFHFTSILSIFG 1813 (1826)
Q Consensus 1746 ~~~vf~~a~~-~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~-----w~~~~~~~~~~~~~~~~ 1813 (1826)
|...|++|++ .++...+|..++.+|...|+++.|+..|+++++.-|.+..+ |+..+++.++.-.+.+.
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6666666663 34556666666666666666666666666666666655443 33333444444444433
No 192
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=97.24 E-value=0.0009 Score=62.50 Aligned_cols=73 Identities=15% Similarity=0.281 Sum_probs=66.7
Q ss_pred cccCCCCEEEEEEEEEeeceEEEEEecCceEEEEE-ccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEee
Q 000227 1464 SNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCH-VSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGM 1538 (1826)
Q Consensus 1464 ~~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h-~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~Lsl 1538 (1826)
.-.++|+.+. .|+.+.+.|++|.|-+=++.|++. .+|++..++..+++.+ +|-.+.++|+.+|++++-|-||.
T Consensus 12 ~~P~v~dvv~-~Vv~i~d~~~YV~LleY~iegmIl~~selsr~rirsi~kll-VGk~e~v~ViRVDk~KGYIDLs~ 85 (86)
T PHA02858 12 VFPNINEVTK-GIVFVKDNIFYVKLIDYGLEALIVNYVNVNADRAEKLKKKL-VGKTINVQVIRTDKLKGYIDVRH 85 (86)
T ss_pred ecCCCCeEEE-EEEEEeccEEEEEEecCccceEEecHHHHhHHHHHhhhhhh-cCCeeEEEEEEECCCCCEEEeEc
Confidence 3457899998 888999999999997668999998 9999999999999999 99999999999999999999874
No 193
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.24 E-value=0.0036 Score=79.06 Aligned_cols=129 Identities=13% Similarity=0.064 Sum_probs=106.0
Q ss_pred HHHHHHHHH----hCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000227 1672 PDEFERLVR----SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1826)
Q Consensus 1672 ~~~fer~l~----~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~ 1747 (1826)
.+.+.++.. ..|++..++..|+...+..|+.++|.++++++++ .+... .++..|..+. .| +.+.+.
T Consensus 245 ~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~-----~l~~l~~~l~--~~--~~~~al 314 (398)
T PRK10747 245 SEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDE-----RLVLLIPRLK--TN--NPEQLE 314 (398)
T ss_pred HHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCH-----HHHHHHhhcc--CC--ChHHHH
Confidence 455555544 3466899999999999999999999999999997 33332 2566666553 37 668999
Q ss_pred HHHHHHH-hcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccc
Q 000227 1748 KVFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILSI 1811 (1826)
Q Consensus 1748 ~vf~~a~-~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~~ 1811 (1826)
+..++++ ++++...+++.++.++.+.+++++|++.|+++++.-| +...|+.++..+..+|...
T Consensus 315 ~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 315 KVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHH
Confidence 9999999 6788999999999999999999999999999999998 4677888999988887654
No 194
>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain. RNAPII is composed of 12 subunits (Rpb1-12). Rpb4 and Rpb7 form a heterodimer that associate with the RNAPII core. Rpb7 is a homolog of the Rpc25 of RNA polymerase III, RpoE of the archaeal RNA polymerase, and Rpa43 of eukaryotic RNA polymerase I. Rpb7 has two domains, an N-terminal ribonucleoprotein (RNP) domain and a C-terminal S1 domain, both of which bind single-stranded RNA. It is possible that the S1 domain interacts with the nascent RNA transcript, assisted by the RNP domain. In yeast, Rpb4/Rpb7 is necessary for promoter-directed transcription initiation. They also play a role in regulating transcription-coupled repair in the Rad26-dependent pathway, in efficient mRNA export, and in transcription termination.
Probab=97.19 E-value=0.0019 Score=63.07 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=56.0
Q ss_pred CCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCc-----------cccCCCCCEEEEEEEEEeCCCCeEE-
Q 000227 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNI-----------ETIYRAGEKVKVKILKVDKEKRRIS- 1535 (1826)
Q Consensus 1468 ~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~-----------~~~~~~Gd~Vk~kVl~id~e~~rI~- 1535 (1826)
+|+++.|+|+++.++|+||.+++ +++++|.+.+.++..-+. ...++.|+.|+++|+.+..+.+.+.
T Consensus 1 kgEVi~g~V~~v~~~G~~v~~Gp--l~~f~~~~~ip~~~~~~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~~~~ 78 (88)
T cd04462 1 KGEVVDAIVTSVNKTGFFAEVGP--LSIFISRHLIPSDMEFDPNASPPCFTSNEDIVIKKDTEVRLKIIGTRVDATDIFA 78 (88)
T ss_pred CCcEEEEEEEEEeccEEEEEEcC--ceEEEEeeecCccceECCcCCCCeEeCCCcEEECCCCEEEEEEEEEEEccCceEE
Confidence 48999999999999999999974 999999999976543221 3458899999999999887655432
Q ss_pred -Eeeeccc
Q 000227 1536 -LGMKSSY 1542 (1826)
Q Consensus 1536 -LslK~s~ 1542 (1826)
-+|+..|
T Consensus 79 igt~~~~~ 86 (88)
T cd04462 79 IGTIKDDY 86 (88)
T ss_pred EEEccCCC
Confidence 2455443
No 195
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.16 E-value=0.0035 Score=86.59 Aligned_cols=138 Identities=14% Similarity=0.004 Sum_probs=117.3
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHH
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e 1744 (1826)
.++.+++..-|++++..+|....++.....-..+.|+.+.|...+++|++.-|. -..|..+..+-...| ..+
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~------~~a~~~LA~~l~~lG--~~d 626 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS------ANAYVARATIYRQRH--NVP 626 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHCC--CHH
Confidence 566777889999999999998777665444444669999999999999876552 247888888888999 789
Q ss_pred HHHHHHHHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 000227 1745 AVVKVFQRALQY-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILS 1810 (1826)
Q Consensus 1745 ~~~~vf~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~ 1810 (1826)
.|...|++|++. ++...+|..++.++.+.|++++|.++|+++++..|.++.+|..++..++..|..
T Consensus 627 eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~ 693 (987)
T PRK09782 627 AAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDM 693 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 999999999954 567889999999999999999999999999999999999999999999887763
No 196
>cd05700 S1_Rrp5_repeat_hs9 S1_Rrp5_repeat_hs9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes Homo sapiens S1 repeat 9 (hs9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=97.15 E-value=0.0026 Score=55.18 Aligned_cols=64 Identities=25% Similarity=0.287 Sum_probs=55.1
Q ss_pred CcEEEEEEEEEecCceE-EEecccCceEEEEeeeccCCccccCCCeEEEEEEEeecccCEEEEee
Q 000227 875 GSVIEGKVHESNDFGVV-VSFEEHSDVYGFITHHQLAGATVESGSVIQAAILDVAKAERLVDLSL 938 (1826)
Q Consensus 875 G~~V~g~V~~i~~~Gv~-v~l~~~~~v~g~i~~~~ls~~~~~~G~~v~~~Vl~vd~~~~~v~lS~ 938 (1826)
|+..+-.|.++.++|-. ++-.+-.|++-..+.+|+.+..+.+|++++|+||+||.-+..+++|+
T Consensus 1 G~~L~LvV~~~~edgsv~fs~g~v~g~tv~AtryH~~g~nl~pGqK~kaviLhvD~l~~~VhVSl 65 (65)
T cd05700 1 GDQLKLVVQDVTEDGSVMFSGGQVSGLTVLASRYHKEGVNVTPGCKLKAVILHVDFVKSQVHVSL 65 (65)
T ss_pred CceEEEEEeeeccCCcEEEecCCcCCcEEEEEEEEecceecCCCceeEEEEEEEeeEEeEEEEeC
Confidence 67788899998888754 56555567888899999999999999999999999999999998885
No 197
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.14 E-value=0.0077 Score=76.38 Aligned_cols=135 Identities=13% Similarity=0.055 Sum_probs=107.8
Q ss_pred CCHHHHHHHHHhCC----CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHH
Q 000227 1670 RTPDEFERLVRSSP----NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1826)
Q Consensus 1670 ~s~~~fer~l~~~p----~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~ 1745 (1826)
+..+.++++....| ++..+|+.|+...++.|+.++|.++++++++.-+.... ..+-....+..|. -+ +.+.
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~-~~~~~l~~~~~l~--~~--~~~~ 317 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA-ISLPLCLPIPRLK--PE--DNEK 317 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCccc-chhHHHHHhhhcC--CC--ChHH
Confidence 45778888888888 69999999999999999999999999999986654321 1111334444443 25 5689
Q ss_pred HHHHHHHHH-hcCCcH--HHHHHHHHHHHHcCChHHHHHHHH--HHHHHcCCCHHHHHHHHHHHHhcccc
Q 000227 1746 VVKVFQRAL-QYCDPK--KVHLALLGLYERTEQNKLADELLY--KMIKKFKHSCKVIIELLSFHFTSILS 1810 (1826)
Q Consensus 1746 ~~~vf~~a~-~~~~~~--kv~~~~~~i~~~~~~~~~a~~~~~--~~~kk~~~~~~~w~~~~~~~~~~~~~ 1810 (1826)
+.+.+++|+ +.++.. .+...|+.++.+.|++++|++.|+ .+++..|. ...+..++..+...|..
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~ 386 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDK 386 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCH
Confidence 999999999 566777 788899999999999999999999 68888885 55577999999888764
No 198
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=97.14 E-value=0.0098 Score=79.90 Aligned_cols=136 Identities=7% Similarity=-0.025 Sum_probs=94.8
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHH
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e 1744 (1826)
.++..++..-|++++..+|++...|...+....+.++.+.|...+++|++.-|.. ...|..+.++....| +.+
T Consensus 89 ~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~-----~~a~~~la~~l~~~g--~~~ 161 (656)
T PRK15174 89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGN-----SQIFALHLRTLVLMD--KEL 161 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHCC--ChH
Confidence 3445566778888888888888888888888888888888888888887643322 236777788878888 668
Q ss_pred HHHHHHHHHH-hcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcc
Q 000227 1745 AVVKVFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVIIELLSFHFTSI 1808 (1826)
Q Consensus 1745 ~~~~vf~~a~-~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~-~~~~w~~~~~~~~~~~ 1808 (1826)
.|...|++++ ..+++...|..++ .+.+.|++++|.++|+++++.++. ....+...+..+...+
T Consensus 162 eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g 226 (656)
T PRK15174 162 QAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVG 226 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCC
Confidence 8888888776 4455666665443 367778888888888888877643 2334444455555444
No 199
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.12 E-value=0.0036 Score=65.52 Aligned_cols=108 Identities=19% Similarity=0.311 Sum_probs=81.5
Q ss_pred HHHHHHHHHhCC---CchhHHHHHHHHHHhc----CCHHHHHHHHHHHHhhcccc----hhhhHHHHHHHHHHHHHHcCC
Q 000227 1672 PDEFERLVRSSP---NSSFVWIKYMAFMLSM----ADVEKARSIAERALQTINIR----EENEKLNIWVAYFNLENEYGN 1740 (1826)
Q Consensus 1672 ~~~fer~l~~~p---~ss~lWi~y~~f~l~~----~ei~kAR~i~erAl~~i~~r----e~~e~~niW~a~l~lE~~~G~ 1740 (1826)
+..||..|.... +.=.+|++|+++..++ +.-..-+.+++|+++..... .+.-=++||+.|+++-
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~----- 79 (126)
T PF08311_consen 5 RQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLS----- 79 (126)
T ss_dssp HHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTB-----
T ss_pred HHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHc-----
Confidence 345666665544 4457999999999975 35567789999999877443 2222458999999752
Q ss_pred CCHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000227 1741 PPEEAVVKVFQRALQY---CDPKKVHLALLGLYERTEQNKLADELLYKMI 1787 (1826)
Q Consensus 1741 ~~~e~~~~vf~~a~~~---~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~ 1787 (1826)
..++++|+.+... ......|..+|.+++..|++++|+++|+.|+
T Consensus 80 ---~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 80 ---SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp ---SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ---cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 2578899988853 4789999999999999999999999999985
No 200
>PRK05054 exoribonuclease II; Provisional
Probab=97.10 E-value=0.0013 Score=87.09 Aligned_cols=70 Identities=21% Similarity=0.263 Sum_probs=59.5
Q ss_pred CCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcc---cc--cC-------ccccCCCCCEEEEEEEEEeCCCCeEEE
Q 000227 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSED---HV--DN-------IETIYRAGEKVKVKILKVDKEKRRISL 1536 (1826)
Q Consensus 1469 G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~---~~--~~-------~~~~~~~Gd~Vk~kVl~id~e~~rI~L 1536 (1826)
|+.+.|.|++|++||+||+|.+.++.||+|++.+.+. +. .+ -...|+.||.|+++|.++|.++++|.+
T Consensus 562 ~~~f~g~I~~v~~~G~fV~l~~~~veglV~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~lGd~V~V~v~~vd~~~~~i~~ 641 (644)
T PRK05054 562 DTRFAAEIIDISRGGMRVRLLENGAVAFIPASFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRMETRSIIA 641 (644)
T ss_pred CeEEEEEEEeeecCcEEEEEeCCceEEEEEccccCCCccceEEccccceEEEeCCEEEcCCCEEEEEEEEEccccCeEEE
Confidence 4599999999999999999998789999999999653 11 11 124799999999999999999999988
Q ss_pred ee
Q 000227 1537 GM 1538 (1826)
Q Consensus 1537 sl 1538 (1826)
.+
T Consensus 642 ~~ 643 (644)
T PRK05054 642 RP 643 (644)
T ss_pred EE
Confidence 64
No 201
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.10 E-value=0.0038 Score=78.42 Aligned_cols=117 Identities=17% Similarity=0.269 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc--CCcHHHHH
Q 000227 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY--CDPKKVHL 1764 (1826)
Q Consensus 1687 ~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~--~~~~kv~~ 1764 (1826)
.-|..|..|++..|+.+++--..+|++-++.-=++ +|+.|+.+...+| ..+-++.+..+||+. .+..-+++
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~e-----fWiky~~~m~~~~--~~~~~~~~~~~~~~i~~k~~~~i~L 370 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDE-----FWIKYARWMESSG--DVSLANNVLARACKIHVKKTPIIHL 370 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHH-----HHHHHHHHHHHcC--chhHHHHHHHhhhhhcCCCCcHHHH
Confidence 58999999999999999999999999866643233 8999999999999 889999999999976 46888999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 000227 1765 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILS 1810 (1826)
Q Consensus 1765 ~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~ 1810 (1826)
.++.|++..|+++.|+.+|++....+|.-..+=+.++.++.++++.
T Consensus 371 ~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 371 LEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNL 416 (577)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcch
Confidence 9999999999999999999999999998888888888888877765
No 202
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.09 E-value=0.01 Score=79.10 Aligned_cols=132 Identities=8% Similarity=-0.017 Sum_probs=116.5
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 000227 1673 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1752 (1826)
Q Consensus 1673 ~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~ 1752 (1826)
.....+..--|+....-+.-++-..+.|-.+.|...+++++..-|... ..|+.|+..-...+ -.|.|...+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~-----~a~~~~a~~L~~~~--~~eeA~~~~~~ 145 (694)
T PRK15179 73 PELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS-----EAFILMLRGVKRQQ--GIEAGRAEIEL 145 (694)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHhc--cHHHHHHHHHH
Confidence 344445566788899999999999999999999999999998666554 48999999999999 77999999999
Q ss_pred HHh-cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccc
Q 000227 1753 ALQ-YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILSI 1811 (1826)
Q Consensus 1753 a~~-~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~~ 1811 (1826)
+++ -++....+..++..+.+.|++++|.++|++++...|.....|+.|+..+++.|...
T Consensus 146 ~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~ 205 (694)
T PRK15179 146 YFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALW 205 (694)
T ss_pred HhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 995 56789999999999999999999999999999988999999999999999988653
No 203
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.09 E-value=0.0066 Score=83.14 Aligned_cols=137 Identities=9% Similarity=0.007 Sum_probs=114.7
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHH
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e 1744 (1826)
.++..+..+.|+++....|.+...|...+....+.++.++|...+++|+..-|.. ...|..+..+-...| ..+
T Consensus 28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~-----~~a~~~la~~l~~~g--~~~ 100 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQN-----DDYQRGLILTLADAG--QYD 100 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHCC--CHH
Confidence 4455556788899987789999999999999999999999999999998654332 246788888888889 779
Q ss_pred HHHHHHHHHHh-cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1745 AVVKVFQRALQ-YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1745 ~~~~vf~~a~~-~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
.|...++++++ .++... |..++.+|...|+++.|...|+++++..|.+..+|+.++..+...+.
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999994 556666 99999999999999999999999999999999999999988765544
No 204
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.05 E-value=0.0071 Score=76.40 Aligned_cols=150 Identities=13% Similarity=0.085 Sum_probs=123.1
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchh-hh-----------
Q 000227 1656 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE-NE----------- 1723 (1826)
Q Consensus 1656 ~~~~~~~~~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~-~e----------- 1723 (1826)
+...+.....++..++..-+++++..+|++....-..+..+++.++.+.|.+++++..+......+ ..
T Consensus 157 l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 157 ITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 344556666778888999999999999999998888899999999999999888888764332110 00
Q ss_pred -------------------------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCChHH
Q 000227 1724 -------------------------KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKL 1778 (1826)
Q Consensus 1724 -------------------------~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~~~kv~~~~~~i~~~~~~~~~ 1778 (1826)
.-.++.+|...-...| +.+.|.++.++++..++...+.+.++.+ ..++.++
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g--~~~~A~~~L~~~l~~~~~~~l~~l~~~l--~~~~~~~ 312 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD--DHDTAQQIILDGLKRQYDERLVLLIPRL--KTNNPEQ 312 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhcCCCHHHHHHHhhc--cCCChHH
Confidence 1136778888999999 8899999999999877777777766665 4489999
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1779 ADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1779 a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
+.+.+++.++++|+++.+++.++++++.++.
T Consensus 313 al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~ 343 (398)
T PRK10747 313 LEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE 343 (398)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999999998875
No 205
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.01 Score=72.23 Aligned_cols=146 Identities=14% Similarity=0.079 Sum_probs=123.7
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHH
Q 000227 1656 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1735 (1826)
Q Consensus 1656 ~~~~~~~~~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE 1735 (1826)
+..--.+.+.++.-.+..||..++...|..-.++|+.++.+++..+-++--+.+..|.+.-+-. -.++.-.-.|-
T Consensus 330 ~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n-----~dvYyHRgQm~ 404 (606)
T KOG0547|consen 330 LLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN-----PDVYYHRGQMR 404 (606)
T ss_pred HHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC-----CchhHhHHHHH
Confidence 3334456678888899999999999999999999999999999999999999999997543322 23787777777
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 000227 1736 NEYGNPPEEAVVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSI 1808 (1826)
Q Consensus 1736 ~~~G~~~~e~~~~vf~~a~~~~~~-~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~ 1808 (1826)
..++ +++.|..-|+.|+...|. .--|++++-...+.++++.+...|+.+.++||.++.++-.||+.|.++.
T Consensus 405 flL~--q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqq 476 (606)
T KOG0547|consen 405 FLLQ--QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQ 476 (606)
T ss_pred HHHH--HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHH
Confidence 7888 779999999999977664 4458888888888899999999999999999999999999999988775
No 206
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.03 E-value=0.0057 Score=57.95 Aligned_cols=97 Identities=16% Similarity=0.111 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CcHHHHHHH
Q 000227 1688 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLAL 1766 (1826)
Q Consensus 1688 lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~-~~~kv~~~~ 1766 (1826)
.|...+....+.+++++|...++++++.-+.. ..+|..+..+-...| +.+.+.+.|+++++.. ....+|..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ 74 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN-----ADAYYNLAAAYYKLG--KYEEALEDYEKALELDPDNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCcchhHHHHH
Confidence 57778888888999999999999998654332 146777777777778 6799999999999654 455789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHcC
Q 000227 1767 LGLYERTEQNKLADELLYKMIKKFK 1791 (1826)
Q Consensus 1767 ~~i~~~~~~~~~a~~~~~~~~kk~~ 1791 (1826)
+.++...++++.|.+.+.++++.+|
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHccCC
Confidence 9999999999999999999988765
No 207
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=97.00 E-value=0.0087 Score=81.98 Aligned_cols=142 Identities=6% Similarity=-0.067 Sum_probs=108.0
Q ss_pred cCCCCCHHHHHHHHHhCCCc----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccch----------hhhHHHHHHHH
Q 000227 1666 KDAPRTPDEFERLVRSSPNS----SFVWIKYMAFMLSMADVEKARSIAERALQTINIRE----------ENEKLNIWVAY 1731 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~s----s~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re----------~~e~~niW~a~ 1731 (1826)
++..++...|++++..+|.. ...+..++.-.++.+++++|.+.+++++..-|..- +..+...+..+
T Consensus 286 g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 286 HQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred CCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 33455666788877777765 24556555555788888888888888876543110 11233455666
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1732 FNLENEYGNPPEEAVVKVFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1732 l~lE~~~G~~~~e~~~~vf~~a~-~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
..+-...| +.+.|.++|++++ ..++...+|+.++.++...|++++|.++|++++..+|.+..+|+..|..++..+.
T Consensus 366 a~~l~~~g--~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 366 SQVAKYSN--DLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Confidence 66777779 7799999999999 5677899999999999999999999999999999999999999999998777653
No 208
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.98 E-value=0.01 Score=71.94 Aligned_cols=119 Identities=13% Similarity=0.004 Sum_probs=80.6
Q ss_pred cCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHH
Q 000227 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~ 1745 (1826)
++..++..+|++++..+|++...|........+.++++.|.+.+++|++.-|... ..|.....+....| ..+.
T Consensus 78 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~-----~a~~~lg~~l~~~g--~~~e 150 (296)
T PRK11189 78 GLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-----YAYLNRGIALYYGG--RYEL 150 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCC--CHHH
Confidence 3344567788888888888888888888888888888888888888876433221 25555555555667 6688
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 000227 1746 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK 1791 (1826)
Q Consensus 1746 ~~~vf~~a~~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~ 1791 (1826)
|.+.|+++++.++..-....+..+....+++++|.+.|++.+...+
T Consensus 151 A~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 151 AQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 8888888886554332222223334556778888888877766553
No 209
>cd04462 S1_RNAPII_Rpb7 S1_RNAPII_Rpb7: Eukaryotic RNA polymerase II (RNAPII) Rpb7 subunit C-terminal S1 domain. RNAPII is composed of 12 subunits (Rpb1-12). Rpb4 and Rpb7 form a heterodimer that associate with the RNAPII core. Rpb7 is a homolog of the Rpc25 of RNA polymerase III, RpoE of the archaeal RNA polymerase, and Rpa43 of eukaryotic RNA polymerase I. Rpb7 has two domains, an N-terminal ribonucleoprotein (RNP) domain and a C-terminal S1 domain, both of which bind single-stranded RNA. It is possible that the S1 domain interacts with the nascent RNA transcript, assisted by the RNP domain. In yeast, Rpb4/Rpb7 is necessary for promoter-directed transcription initiation. They also play a role in regulating transcription-coupled repair in the Rad26-dependent pathway, in efficient mRNA export, and in transcription termination.
Probab=96.93 E-value=0.0039 Score=60.92 Aligned_cols=63 Identities=13% Similarity=0.132 Sum_probs=52.1
Q ss_pred CCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCC-----------CccCCCCcEEEEEEEEEeCCCC
Q 000227 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESP-----------EKEFPIGKLVAGRVLSVEPLSK 1441 (1826)
Q Consensus 1378 ~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~-----------~~~f~vGq~V~~kVl~vd~e~~ 1441 (1826)
.|+++.|.|+++++.|+||.+| .+++|++...+.+++..+| ...+.+|+.|++||+++..+.+
T Consensus 1 kgEVi~g~V~~v~~~G~~v~~G-pl~~f~~~~~ip~~~~~~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~ 74 (88)
T cd04462 1 KGEVVDAIVTSVNKTGFFAEVG-PLSIFISRHLIPSDMEFDPNASPPCFTSNEDIVIKKDTEVRLKIIGTRVDAT 74 (88)
T ss_pred CCcEEEEEEEEEeccEEEEEEc-CceEEEEeeecCccceECCcCCCCeEeCCCcEEECCCCEEEEEEEEEEEccC
Confidence 4899999999999999999998 6999999998887665444 2347899999999998865443
No 210
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.90 E-value=0.0014 Score=50.75 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=29.8
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 000227 1774 EQNKLADELLYKMIKKFKHSCKVIIELLSFHF 1805 (1826)
Q Consensus 1774 ~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~ 1805 (1826)
|+.+.|+++|+++++.||.++.+|+.|++|+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 56789999999999999999999999999975
No 211
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.83 E-value=0.0096 Score=76.71 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=90.9
Q ss_pred cCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhc-------CCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHc
Q 000227 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSM-------ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY 1738 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~-------~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~ 1738 (1826)
.+.++-...||++ +.+-|+-.||.-|+.|.+.- +++++-|.+++|||+.+-++-. +-..||-.|+.+|..|
T Consensus 164 ~~~~~v~~~~eka-l~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t-~G~~~we~~~E~e~~~ 241 (881)
T KOG0128|consen 164 EERKEVEELFEKA-LGDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHIT-EGAAIWEMYREFEVTY 241 (881)
T ss_pred cchhHHHHHHHHH-hcccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhc-ccHHHHHHHHHHHHHH
Confidence 4466677888888 56889999999999999863 5699999999999997765432 4557999999999987
Q ss_pred CCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHc---------CChH-------HHHHHHHHHHHHcCCCHHHHHHHH
Q 000227 1739 GNP-PEEAVVKVFQRALQYCDPKKVHLALLGLYERT---------EQNK-------LADELLYKMIKKFKHSCKVIIELL 1801 (1826)
Q Consensus 1739 G~~-~~e~~~~vf~~a~~~~~~~kv~~~~~~i~~~~---------~~~~-------~a~~~~~~~~kk~~~~~~~w~~~~ 1801 (1826)
=.. .-+.+.++|.+.+.++ .-++.+..++++.+ .+++ +-+..|++.+.+++.--..|+.|.
T Consensus 242 l~n~~~~qv~a~~~~el~~~--~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yi 319 (881)
T KOG0128|consen 242 LCNVEQRQVIALFVRELKQP--LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYI 319 (881)
T ss_pred HHhHHHHHHHHHHHHHHhcc--chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 411 1134666777776433 22333333333222 1222 222334444444444455666666
Q ss_pred HHHHhccccccCC
Q 000227 1802 SFHFTSILSIFGH 1814 (1826)
Q Consensus 1802 ~~~~~~~~~~~~~ 1814 (1826)
.|+++.|..-.-+
T Consensus 320 dfe~~~G~p~ri~ 332 (881)
T KOG0128|consen 320 DFEKKSGDPVRIQ 332 (881)
T ss_pred HHHHhcCCchHHH
Confidence 6666655544333
No 212
>PRK11189 lipoprotein NlpI; Provisional
Probab=96.82 E-value=0.022 Score=69.05 Aligned_cols=109 Identities=12% Similarity=-0.051 Sum_probs=92.3
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCcHHH
Q 000227 1684 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY-CDPKKV 1762 (1826)
Q Consensus 1684 ~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~-~~~~kv 1762 (1826)
+....|........+.|+.+.|+..+++|++.-|.. -..|..+-.+-...| +.+.|...|++|++. ++....
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~-----~~a~~~lg~~~~~~g--~~~~A~~~~~~Al~l~P~~~~a 134 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM-----ADAYNYLGIYLTQAG--NFDAAYEAFDSVLELDPTYNYA 134 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHH
Confidence 335668888888999999999999999999754432 247888888888899 889999999999976 457889
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH--HHHHH
Q 000227 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSC--KVIIE 1799 (1826)
Q Consensus 1763 ~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~--~~w~~ 1799 (1826)
|..++.+|...|++++|.+.|+++++..|..+ -+|..
T Consensus 135 ~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~ 173 (296)
T PRK11189 135 YLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLY 173 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999999999999999876 35543
No 213
>PHA02858 EIF2a-like PKR inhibitor; Provisional
Probab=96.79 E-value=0.0026 Score=59.49 Aligned_cols=69 Identities=19% Similarity=0.293 Sum_probs=63.0
Q ss_pred CCCCEEEEEEEEEecceEEEEe-CCCeEEEEE-ccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEE
Q 000227 1377 SPNMIVQGYVKNVTSKGCFIML-SRKLDAKVL-LSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTL 1447 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~~GvFV~l-~~~v~g~v~-iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSl 1447 (1826)
++|+++. .|+.+.+.|++|.| +.+++|.+. .++++..++...++.+ +|....++|+.+|+++|-|.||.
T Consensus 15 ~v~dvv~-~Vv~i~d~~~YV~LleY~iegmIl~~selsr~rirsi~kll-VGk~e~v~ViRVDk~KGYIDLs~ 85 (86)
T PHA02858 15 NINEVTK-GIVFVKDNIFYVKLIDYGLEALIVNYVNVNADRAEKLKKKL-VGKTINVQVIRTDKLKGYIDVRH 85 (86)
T ss_pred CCCeEEE-EEEEEeccEEEEEEecCccceEEecHHHHhHHHHHhhhhhh-cCCeeEEEEEEECCCCCEEEeEc
Confidence 5789998 88899999999988 457999999 9999999999988888 99999999999999999999984
No 214
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.0095 Score=64.64 Aligned_cols=75 Identities=24% Similarity=0.389 Sum_probs=63.7
Q ss_pred ccccCCCCEEEEEEEEEeeceEEEEEec---------CceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCe
Q 000227 1463 LSNLHVGDIVIGQIKRVESYGLFITIEN---------TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRR 1533 (1826)
Q Consensus 1463 ~~~~~~G~iv~G~V~~v~~~GvFV~l~~---------~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~r 1533 (1826)
..-++.|++|-|+|+++..-.+.|++-. +...|-+|+|++.+.+++++++.|++||.|+|+|++.- -.
T Consensus 59 ~~~~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~~~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~---~~ 135 (188)
T COG1096 59 PPLPKGGDIVYGRVTDVREQRALVRIVGVEGKERELATSGAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG---DP 135 (188)
T ss_pred CCCCCCCCEEEEEEeeccceEEEEEEEEEecccccCCCCceeeEEEEecccccccccccccccccEEEEEEEecC---CC
Confidence 4467899999999999999999888741 12567789999999999999999999999999999984 45
Q ss_pred EEEeeec
Q 000227 1534 ISLGMKS 1540 (1826)
Q Consensus 1534 I~LslK~ 1540 (1826)
+.||.+.
T Consensus 136 ~~Lst~~ 142 (188)
T COG1096 136 IQLSTKG 142 (188)
T ss_pred eEEEecC
Confidence 7777765
No 215
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.74 E-value=0.0029 Score=58.30 Aligned_cols=64 Identities=22% Similarity=0.272 Sum_probs=57.0
Q ss_pred cCCCCHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 000227 1738 YGNPPEEAVVKVFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSF 1803 (1826)
Q Consensus 1738 ~G~~~~e~~~~vf~~a~-~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~ 1803 (1826)
.| +.+.|..+|++++ .+++...+++.++.+|.+.|++++|+++++++++..|..+.+|...++.
T Consensus 4 ~~--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 4 QG--DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp TT--HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred cc--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 46 6799999999999 5567999999999999999999999999999999999889999887763
No 216
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.73 E-value=0.0079 Score=74.40 Aligned_cols=156 Identities=18% Similarity=0.298 Sum_probs=107.5
Q ss_pred CccccCCCCCEEEEEEEEEeeceEEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEeccc
Q 000227 754 SDASHIHPNSVVHGYVCNIIETGCFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1826)
Q Consensus 754 ~~~~~~~~G~~~~G~V~~i~~~GvfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~ 833 (1826)
-+++++..|..++|.|.++..||+||++...+.||+|.++++.. ..|.+|+.+-+.|..+-++++.+.+-....
T Consensus 115 c~~~Dve~g~~Y~g~v~~v~~~GvFv~Ln~~v~GL~~~~d~~~~------~~~~vgdeiiV~v~~vr~~~geidf~~~~~ 188 (715)
T COG1107 115 CTMEDVEAGKYYKGIVSRVEKYGVFVELNSHVRGLIHRRDLGGD------PDYAVGDEIIVQVSDVRPEKGEIDFEPVGL 188 (715)
T ss_pred cchhhcccceeeeccccchhhhcceeecChhhhccccccccCCC------CCCCCCCeEEEEeeccCCCCCccceeecCC
Confidence 36789999999999999999999999999999999999999852 248999999999999999989887776554
Q ss_pred ccCCCcchhhHHHHHHHHH--HHHhhcccCCCcccccccccCCCcEE--EEEEEEEecCc--eEEEecccCceEEEEeee
Q 000227 834 CCSSTDASFMQEHFLLEEK--IAMLQSSKHNGSELKWVEGFIIGSVI--EGKVHESNDFG--VVVSFEEHSDVYGFITHH 907 (1826)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~vG~~V--~g~V~~i~~~G--v~v~l~~~~~v~g~i~~~ 907 (1826)
.... ..++-++... +.. ... .+|+.| +|+|+.++.++ -++++.+. +|+++..
T Consensus 189 ~~Y~-----~~~~~ke~~r~~i~~-------------id~-~ig~tV~I~GeV~qikqT~GPTVFtltDe---tg~i~aA 246 (715)
T COG1107 189 DRYR-----EVQVEKELPRTLIDD-------------LDE-MIGKTVRIEGEVTQIKQTSGPTVFTLTDE---TGAIWAA 246 (715)
T ss_pred ccch-----hhhhhhhcccccHHH-------------HHh-hcCceEEEEEEEEEEEEcCCCEEEEEecC---CCceehh
Confidence 3210 0000000000 111 122 577765 58999998764 35677653 4555554
Q ss_pred ccCC------ccccCCCeEEEEEEEeecccCEEEEee
Q 000227 908 QLAG------ATVESGSVIQAAILDVAKAERLVDLSL 938 (1826)
Q Consensus 908 ~ls~------~~~~~G~~v~~~Vl~vd~~~~~v~lS~ 938 (1826)
-+-. -.+++|+.|.. +=.++...+.+.+-.
T Consensus 247 AFe~aGvRAyP~IevGdiV~V-iG~V~~r~g~lQiE~ 282 (715)
T COG1107 247 AFEEAGVRAYPEIEVGDIVEV-IGEVTRRDGRLQIEI 282 (715)
T ss_pred hhccCCcccCCCCCCCceEEE-EEEEeecCCcEEEee
Confidence 4432 15788998874 334566666666543
No 217
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.69 E-value=0.002 Score=49.48 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 000227 1775 QNKLADELLYKMIKKFKHSCKVIIELLSFHF 1805 (1826)
Q Consensus 1775 ~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~ 1805 (1826)
.+|.||.||++.+.-+| +++.||.||+|+.
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHhhc
Confidence 47889999999998887 5899999999864
No 218
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.68 E-value=0.0064 Score=75.38 Aligned_cols=131 Identities=20% Similarity=0.189 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHH---cCCCCHHH
Q 000227 1669 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE---YGNPPEEA 1745 (1826)
Q Consensus 1669 p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~---~G~~~~e~ 1745 (1826)
.+++.-|+|++...||+....-..+--+.++|.||-|-...+|||..-| + .=.||-||-+. .| +...
T Consensus 269 d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~-------F~~Ay~NlanALkd~G--~V~e 338 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-N-------FPDAYNNLANALKDKG--SVTE 338 (966)
T ss_pred hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCC-C-------chHHHhHHHHHHHhcc--chHH
Confidence 4557888888888898888777777777788899999999999986433 2 23345555443 47 7788
Q ss_pred HHHHHHHHHhcCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1746 VVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1746 ~~~vf~~a~~~~~-~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
+...|..|+.+++ +..-...++.||.+.|+++.|-.+|+.++..||+...-.-.+|..|-+||+
T Consensus 339 a~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 339 AVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc
Confidence 8999999997765 455666788899999999999999999999999888888888888877775
No 219
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=96.66 E-value=0.0044 Score=59.22 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=43.4
Q ss_pred CCCCEEEEEEEEEeeceEEEEEecC-----------------ceEEEEEccccCcccccC--ccccCCCCCEEEEEEEEE
Q 000227 1467 HVGDIVIGQIKRVESYGLFITIENT-----------------NLVGLCHVSELSEDHVDN--IETIYRAGEKVKVKILKV 1527 (1826)
Q Consensus 1467 ~~G~iv~G~V~~v~~~GvFV~l~~~-----------------~v~Gl~h~sels~~~~~~--~~~~~~~Gd~Vk~kVl~i 1527 (1826)
++|++|.|+|++++..-+++.|--- ...|++|.+++.....+. +.+.|++||.|+|+|+++
T Consensus 3 ~vGdiV~~rVtrv~~~~a~v~Il~v~~~~~~~~~~~~~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA~ViSl 82 (82)
T PF10447_consen 3 KVGDIVIARVTRVNPRQAKVEILCVEGKGNDSINAGDRPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRARVISL 82 (82)
T ss_dssp -TT-EEEEEEEEE-SSEEEEEEEES----------SSS----SS-S-EEEEGGGT-SS----GGGT--SSSEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEEEEEeccccccccCCcccccccEEEEEeeeecccccchhhHHhccCCCCEEEEEEeeC
Confidence 6899999999999999888887421 578999999987665544 688999999999999975
No 220
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.66 E-value=0.027 Score=69.90 Aligned_cols=96 Identities=13% Similarity=-0.000 Sum_probs=54.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHH
Q 000227 1694 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYER 1772 (1826)
Q Consensus 1694 ~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~-~~~kv~~~~~~i~~~ 1772 (1826)
.-.+..++++.|...+++|++.-+.. ..+|..+..+-...| +.+.|...|++|++.+ +....|.+++.+|..
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~-----~~a~~~~a~~~~~~g--~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNN-----AELYADRAQANIKLG--NFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 33444555666666666665433322 124444444444556 5566666666666433 356666666666666
Q ss_pred cCChHHHHHHHHHHHHHcCCCHHH
Q 000227 1773 TEQNKLADELLYKMIKKFKHSCKV 1796 (1826)
Q Consensus 1773 ~~~~~~a~~~~~~~~kk~~~~~~~ 1796 (1826)
.|+++.|.+.|+++++..|....+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHH
Confidence 777777777777777666655433
No 221
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.61 E-value=0.019 Score=71.06 Aligned_cols=145 Identities=14% Similarity=0.055 Sum_probs=92.6
Q ss_pred HhcccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCC
Q 000227 1662 RLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1741 (1826)
Q Consensus 1662 ~~~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~ 1741 (1826)
.+..++.+++.+.+++++..+|++...|.. .-....+++...++.-+.+++.... ......+..+..+..+....|
T Consensus 53 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G-- 128 (355)
T cd05804 53 AWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAG-- 128 (355)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcC--
Confidence 344667888899999999999999877762 2122222233333333444433211 111111122222223455678
Q ss_pred CHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHhcccc
Q 000227 1742 PEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS----CKVIIELLSFHFTSILS 1810 (1826)
Q Consensus 1742 ~~e~~~~vf~~a~~~~~-~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~----~~~w~~~~~~~~~~~~~ 1810 (1826)
..+.+...|+++++.++ ....|..++.+|.+.|++++|.+.|++.+...+.. ...|..++.+++.+|.-
T Consensus 129 ~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 129 QYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred CHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 77889999999996554 46678888889999999999999999998877543 24577788888777654
No 222
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.029 Score=68.28 Aligned_cols=130 Identities=16% Similarity=0.123 Sum_probs=94.0
Q ss_pred CHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000227 1671 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1750 (1826)
Q Consensus 1671 s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf 1750 (1826)
++.=|.|+|..||+...+|..----.++..+-..|-+-..||++.. .|+- .-|.-+=..=...+ -..=|-=.|
T Consensus 349 Av~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~Dy----RAWYGLGQaYeim~--Mh~YaLyYf 421 (559)
T KOG1155|consen 349 AVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDY----RAWYGLGQAYEIMK--MHFYALYYF 421 (559)
T ss_pred HHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhH----HHHhhhhHHHHHhc--chHHHHHHH
Confidence 3677999999999999999988888889999999999999999744 4432 35654443333344 335556677
Q ss_pred HHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 000227 1751 QRALQY-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTS 1807 (1826)
Q Consensus 1751 ~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~ 1807 (1826)
++|++. +....+|..++++|++.++.++|...|.+++..--.......+.|+++.+.
T Consensus 422 qkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 422 QKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL 479 (559)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 777765 446777777777777777777777777777776655556666666665443
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.56 E-value=0.0051 Score=51.79 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 000227 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLS 1802 (1826)
Q Consensus 1761 kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~ 1802 (1826)
.+|..++..|.+.|++++|+++|+++++.+|+++.+|..+++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 478999999999999999999999999999999999999986
No 224
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=96.51 E-value=0.012 Score=66.44 Aligned_cols=74 Identities=23% Similarity=0.277 Sum_probs=65.5
Q ss_pred CCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCc----cCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEeccc
Q 000227 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY----VESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~----v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~ 1451 (1826)
++||.|-|+|..+...+-.|+|+....|.+++++..+.. ..+.+..|.+|++|.++|..+|+ .+.++|++|...
T Consensus 63 ~~gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~-~~~~~L~~k~~~ 140 (239)
T COG1097 63 EVGDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDFLRRKFENAEKDLRPFLNVGDLVYAKVVDVDR-DGEVELTLKDEG 140 (239)
T ss_pred CCCCEEEEEEEEEcccceEEEcCCccceEeehhhhhcccccccccccccccccCCEEEEEEEEccC-CCceEEEeecCC
Confidence 689999999999999999999999999999999996544 35788899999999999999994 889999996533
No 225
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=96.47 E-value=0.011 Score=65.43 Aligned_cols=77 Identities=14% Similarity=0.243 Sum_probs=60.7
Q ss_pred CCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccc------------cCccccCCCCCEEEEEEEEEeCC--CC
Q 000227 1467 HVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV------------DNIETIYRAGEKVKVKILKVDKE--KR 1532 (1826)
Q Consensus 1467 ~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~------------~~~~~~~~~Gd~Vk~kVl~id~e--~~ 1532 (1826)
-.|+++.|.|+++.++|+||.+++ +++++|.+.|.++.. ++-...++.|+.|+++|..+..+ .-
T Consensus 80 f~gEVv~g~V~~v~~~G~~v~~Gp--~~ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~~ 157 (176)
T PTZ00162 80 FKDEVLDAIVTDVNKLGFFAQAGP--LKAFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVRYDASNL 157 (176)
T ss_pred CCCCEEEEEEEEEecceEEEEeeC--eEEEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEEecCCCc
Confidence 479999999999999999999975 779999999974421 11135789999999999887654 34
Q ss_pred eEEEeeeccccCC
Q 000227 1533 RISLGMKSSYFKN 1545 (1826)
Q Consensus 1533 rI~LslK~s~~~~ 1545 (1826)
++..+||..|...
T Consensus 158 ~~i~T~~~~~LG~ 170 (176)
T PTZ00162 158 FAIATINSDYLGP 170 (176)
T ss_pred EEEEEecCCCcCc
Confidence 5667888877744
No 226
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.47 E-value=0.049 Score=55.47 Aligned_cols=105 Identities=15% Similarity=0.080 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-cCCc---HHH
Q 000227 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ-YCDP---KKV 1762 (1826)
Q Consensus 1687 ~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~-~~~~---~kv 1762 (1826)
..|..-+...++.++.++|.+.+++++..-+.... ....|+.+..+-...| +.+.|...|+++++ +++. ..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~ 78 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY--APNAHYWLGEAYYAQG--KYADAAKAFLAVVKKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc--cHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHCCCCCcccHH
Confidence 45677788889999999999999999865432211 1235555666666778 77999999999995 4442 578
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHH
Q 000227 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSCK 1795 (1826)
Q Consensus 1763 ~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~ 1795 (1826)
|..++.+|.+.+++++|.+.|+++++.+|.+..
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 999999999999999999999999999998754
No 227
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.45 E-value=0.033 Score=57.89 Aligned_cols=93 Identities=17% Similarity=0.246 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHHhc---C-CHHHHHHHHHHHHhhcc----cchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 000227 1686 SFVWIKYMAFMLSM---A-DVEKARSIAERALQTIN----IREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1757 (1826)
Q Consensus 1686 s~lWi~y~~f~l~~---~-ei~kAR~i~erAl~~i~----~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~ 1757 (1826)
=.+|++|+++..++ | --..=..++||++++.. ++.+.==++||+.|+++ .+. .+++|+...+..
T Consensus 22 L~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~---~~d-----p~~if~~L~~~~ 93 (125)
T smart00777 22 LDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADN---CDE-----PRELFQFLYSKG 93 (125)
T ss_pred hHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHh---cCC-----HHHHHHHHHHCC
Confidence 47999999998863 2 22345789999988753 33333334899999976 452 478898887543
Q ss_pred ---CcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000227 1758 ---DPKKVHLALLGLYERTEQNKLADELLYKM 1786 (1826)
Q Consensus 1758 ---~~~kv~~~~~~i~~~~~~~~~a~~~~~~~ 1786 (1826)
...-.|..+|.+++..|++.+|.++|+.+
T Consensus 94 IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G 125 (125)
T smart00777 94 IGTKLALFYEEWAQLLEAAGRYKKADEVYQLG 125 (125)
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 46778999999999999999999999864
No 228
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.44 E-value=0.018 Score=70.67 Aligned_cols=87 Identities=14% Similarity=0.275 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHcCCC---------------C---HHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHcCChHHHHHHHH
Q 000227 1724 KLNIWVAYFNLENEYGNP---------------P---EEAVVKVFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLY 1784 (1826)
Q Consensus 1724 ~~niW~a~l~lE~~~G~~---------------~---~e~~~~vf~~a~-~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~ 1784 (1826)
+++=+++||+-|....+. + ..+.-.+|++|. .|+...++|.+|+.+..+.+.+.+.-.+|.
T Consensus 50 ~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~ 129 (568)
T KOG2396|consen 50 SIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFA 129 (568)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 446699999999877521 0 123345899999 688899999999999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcccc
Q 000227 1785 KMIKKFKHSCKVIIELLSFHFTSILS 1810 (1826)
Q Consensus 1785 ~~~kk~~~~~~~w~~~~~~~~~~~~~ 1810 (1826)
.|+.++|.++.+||.+|.+++.-..+
T Consensus 130 ~~l~~Hp~~~dLWI~aA~wefe~n~n 155 (568)
T KOG2396|consen 130 AMLAKHPNNPDLWIYAAKWEFEINLN 155 (568)
T ss_pred HHHHhCCCCchhHHhhhhhHHhhccc
Confidence 99999999999999999999887654
No 229
>PRK14574 hmsH outer membrane protein; Provisional
Probab=96.44 E-value=0.032 Score=75.81 Aligned_cols=138 Identities=14% Similarity=0.020 Sum_probs=97.6
Q ss_pred cCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHH
Q 000227 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~ 1745 (1826)
++.+++...++|++...|.+...-+..+......++.++|.++++++++.-|... .+|..++.+-...| ..+.
T Consensus 82 G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~-----~~l~gLa~~y~~~~--q~~e 154 (822)
T PRK14574 82 GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP-----DLISGMIMTQADAG--RGGV 154 (822)
T ss_pred CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHhhcC--CHHH
Confidence 5566777777777733333443333335677777888888888888876554432 35666555556667 5688
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 000227 1746 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILS 1810 (1826)
Q Consensus 1746 ~~~vf~~a~~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~ 1810 (1826)
|...++++....+....|+.++.++...++..+|.+.|+++++.+|...+++..|...+-+.+..
T Consensus 155 Al~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~ 219 (822)
T PRK14574 155 VLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIV 219 (822)
T ss_pred HHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Confidence 88888888877666666777777777777777788888888888888888888888877666554
No 230
>COG0557 VacB Exoribonuclease R [Transcription]
Probab=96.37 E-value=0.0074 Score=81.27 Aligned_cols=76 Identities=33% Similarity=0.625 Sum_probs=65.8
Q ss_pred ccccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccc-----------cCccccCCCCCEEEEEEEEEeCCC
Q 000227 1463 LSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHV-----------DNIETIYRAGEKVKVKILKVDKEK 1531 (1826)
Q Consensus 1463 ~~~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~-----------~~~~~~~~~Gd~Vk~kVl~id~e~ 1531 (1826)
+-.-++|+.+.|.|.+|+.||+||.|.+.+++|++|++.+.+++. +.....|+.||.|++++.+++...
T Consensus 617 ~m~~~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v~v~v~~v~~~~ 696 (706)
T COG0557 617 YMKKRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEVKVKVTSVDLDE 696 (706)
T ss_pred HHHHhcCCEEEEEEEEEEeccEEEEecccccccceEcccCCCceeeeccccceeeccccccccccCCEEEEEEEEEcccc
Confidence 456689999999999999999999998877999999999986432 223457999999999999999999
Q ss_pred CeEEEee
Q 000227 1532 RRISLGM 1538 (1826)
Q Consensus 1532 ~rI~Lsl 1538 (1826)
++|.+++
T Consensus 697 ~~i~~~~ 703 (706)
T COG0557 697 RKIDFEL 703 (706)
T ss_pred cceEEEe
Confidence 9998876
No 231
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.36 E-value=0.053 Score=64.22 Aligned_cols=107 Identities=10% Similarity=0.121 Sum_probs=85.6
Q ss_pred chhHHHHHHHHH-HhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hcCCc---
Q 000227 1685 SSFVWIKYMAFM-LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL-QYCDP--- 1759 (1826)
Q Consensus 1685 ss~lWi~y~~f~-l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~-~~~~~--- 1759 (1826)
...-|..++--. +..++.++|...++..++.-|..........|++.+.+ ..| +++.|...|++++ +|+++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~--~~g--~~~~A~~~f~~vv~~yP~s~~~ 216 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY--NKG--KKDDAAYYFASVVKNYPKSPKA 216 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH--HcC--CHHHHHHHHHHHHHHCCCCcch
Confidence 456776666554 56799999999999999877765444445667777665 478 7899999999999 67764
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHH
Q 000227 1760 KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCK 1795 (1826)
Q Consensus 1760 ~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~ 1795 (1826)
...|.+++.+|.+.|++++|+++|++.++.||++..
T Consensus 217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 217 ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 666777888999999999999999999999998763
No 232
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.35 E-value=0.062 Score=68.24 Aligned_cols=130 Identities=15% Similarity=0.058 Sum_probs=106.8
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHH
Q 000227 1655 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1734 (1826)
Q Consensus 1655 ~~~~~~~~~~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~l 1734 (1826)
.+.+.-.....++.+++...+.++....|+...-++..+....+.|+.++|+..+++|.+.-+.. .+.+...+..+
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~----~l~~~~~~a~l 162 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGND----NILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC----chHHHHHHHHH
Confidence 35554455667888888999999999999988888988999999999999999999997644332 23467767777
Q ss_pred HHHcCCCCHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc
Q 000227 1735 ENEYGNPPEEAVVKVFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1790 (1826)
Q Consensus 1735 E~~~G~~~~e~~~~vf~~a~-~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~ 1790 (1826)
-...| +.+.|...|+++. +.|++..++..++.+|.+.|+++.|.+++++..+.-
T Consensus 163 ~l~~~--~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 163 LLAQN--ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 77789 7899999999999 457788899999999999999999999888888763
No 233
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.35 E-value=0.019 Score=54.24 Aligned_cols=81 Identities=16% Similarity=0.078 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 000227 1727 IWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHF 1805 (1826)
Q Consensus 1727 iW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~-~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~ 1805 (1826)
+|..........| ..+.+...|+++++.. +...+|..++.+|...+++++|.+.|+++++..+....+|..++.+++
T Consensus 2 ~~~~~a~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLG--DYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHh--cHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 5777777777789 7799999999999654 456889999999999999999999999999999988899999999988
Q ss_pred hccc
Q 000227 1806 TSIL 1809 (1826)
Q Consensus 1806 ~~~~ 1809 (1826)
..+.
T Consensus 80 ~~~~ 83 (100)
T cd00189 80 KLGK 83 (100)
T ss_pred HHHh
Confidence 7765
No 234
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.35 E-value=0.016 Score=52.94 Aligned_cols=62 Identities=13% Similarity=0.041 Sum_probs=52.7
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH
Q 000227 1731 YFNLENEYGNPPEEAVVKVFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSC 1794 (1826)
Q Consensus 1731 ~l~lE~~~G~~~~e~~~~vf~~a~-~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~ 1794 (1826)
....-...| +.+.|...|++++ ..++...+|..++.++.+.|++++|.++|+++++..|.++
T Consensus 3 ~a~~~~~~g--~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQG--DYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCT--HHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcC--CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 334455678 7899999999999 5677999999999999999999999999999999999764
No 235
>TIGR02062 RNase_B exoribonuclease II. This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.
Probab=96.31 E-value=0.0085 Score=79.38 Aligned_cols=69 Identities=20% Similarity=0.336 Sum_probs=57.6
Q ss_pred CCEEEEEEEEEeeceEEEEEecCceEEEEEccccCc--c-cc--cC-----c--cccCCCCCEEEEEEEEEeCCCCeEEE
Q 000227 1469 GDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSE--D-HV--DN-----I--ETIYRAGEKVKVKILKVDKEKRRISL 1536 (1826)
Q Consensus 1469 G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~--~-~~--~~-----~--~~~~~~Gd~Vk~kVl~id~e~~rI~L 1536 (1826)
|+.+.|.|+.+..||+||+|...++.|++|++.+.+ + +. .+ + ...|+.||.|+++|.++|.++++|.+
T Consensus 558 ~~~f~g~I~~v~~~g~~v~l~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~lgd~v~V~v~~vd~~~~~i~~ 637 (639)
T TIGR02062 558 NTRFAAEIVDISRGGMRVRLLENGAIAFIPAAFLHANREELVCNQENGTVQIKGETVYKIGDVIDVVLTEVRMETRSIIA 637 (639)
T ss_pred CcEEEEEEEeeeCCcEEEEEecCceEEEEEhhhcCCCCcceEEcccccEEEEeccEEEecCCEEEEEEEEeccccCcEee
Confidence 459999999999999999998778999999999965 2 21 11 1 12699999999999999999999876
Q ss_pred e
Q 000227 1537 G 1537 (1826)
Q Consensus 1537 s 1537 (1826)
.
T Consensus 638 ~ 638 (639)
T TIGR02062 638 R 638 (639)
T ss_pred e
Confidence 3
No 236
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=96.30 E-value=0.012 Score=72.86 Aligned_cols=72 Identities=28% Similarity=0.553 Sum_probs=63.6
Q ss_pred cccccCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeec
Q 000227 1462 NLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1826)
Q Consensus 1462 ~~~~~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~ 1540 (1826)
++.++..|..+.|+|.++..||+||+|.. .+.||+|.++++.. ..|.+||.+-+.+..+-++++.|+|-...
T Consensus 116 ~~~Dve~g~~Y~g~v~~v~~~GvFv~Ln~-~v~GL~~~~d~~~~------~~~~vgdeiiV~v~~vr~~~geidf~~~~ 187 (715)
T COG1107 116 TMEDVEAGKYYKGIVSRVEKYGVFVELNS-HVRGLIHRRDLGGD------PDYAVGDEIIVQVSDVRPEKGEIDFEPVG 187 (715)
T ss_pred chhhcccceeeeccccchhhhcceeecCh-hhhccccccccCCC------CCCCCCCeEEEEeeccCCCCCccceeecC
Confidence 47799999999999999999999999975 89999999998762 35899999999999999988998876543
No 237
>PRK12328 nusA transcription elongation factor NusA; Provisional
Probab=96.29 E-value=0.0053 Score=74.34 Aligned_cols=122 Identities=19% Similarity=0.252 Sum_probs=86.5
Q ss_pred cccccCCCCEEEEEEEeecCCCeEEEecccccccc---cccCCCccccC--CCCCEEEEEEEEEeec-eEEEEECCCeEE
Q 000227 714 MKSVIKPGYEFDQLLVLDNESSNLLLSAKYSLINS---AQQLPSDASHI--HPNSVVHGYVCNIIET-GCFVRFLGRLTG 787 (1826)
Q Consensus 714 l~~~lk~G~~i~~vl~id~~~~~v~ls~K~sl~~~---~~~i~~~~~~~--~~G~~~~G~V~~i~~~-GvfV~f~~gl~G 787 (1826)
+...+++||.+..-+..+.-.+...-++|+.+... .+. -.-|+++ +.|+++.|+|.++... ++||.+ |+..|
T Consensus 87 i~~~~~vGd~i~~~i~~~~fgRiaaq~akq~i~Qkir~~er-~~i~~ey~~~~Geiv~g~V~r~~~~~~i~vdl-g~~ea 164 (374)
T PRK12328 87 IDPSVEIGDELTYELSLENMGRTAANTLFKELEYHIQRLLE-ESIFEKYKKKVGKIVFGTVVRVDNEENTFIEI-DEIRA 164 (374)
T ss_pred hCCCCCCCCEEEEecChhhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCcEEEEEEEEEecCCCEEEEc-CCeEE
Confidence 44568899999843333333444556677777322 221 0113333 4699999999999874 599999 68999
Q ss_pred EEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCC---eEEEEecccccCCCcchhhHHHHHHH
Q 000227 788 FAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETG---RITLSLKQSCCSSTDASFMQEHFLLE 850 (1826)
Q Consensus 788 lv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~---rl~LSlk~~~~~~~~~~~~~~~~~~~ 850 (1826)
++|+++.. |.+.|++||.++|.|.+|+...+ .+.||. +++.|+..+|...
T Consensus 165 ~LP~~eqi------p~E~~~~Gdrik~~i~~V~~~~k~gp~IilSR-------t~p~~v~~Lfe~E 217 (374)
T PRK12328 165 VLPMKNRI------KGEKFKVGDVVKAVLKRVKIDKNNGILIELSR-------TSPKFLEALLELE 217 (374)
T ss_pred EeCHHHcC------CCCcCCCCCEEEEEEEEEecCCCCCCEEEEEc-------CCHHHHHHHHHHh
Confidence 99998764 56789999999999999998766 677774 4567777777743
No 238
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.27 E-value=0.065 Score=62.32 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=92.5
Q ss_pred ccCCCCCHHHHHHHHHhCCCchh---HHHHHHHHHHhc--------CCHHHHHHHHHHHHhhcccchhhhHHHH------
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSF---VWIKYMAFMLSM--------ADVEKARSIAERALQTINIREENEKLNI------ 1727 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~---lWi~y~~f~l~~--------~ei~kAR~i~erAl~~i~~re~~e~~ni------ 1727 (1826)
.++..++...|++++..+|++.. .|.+-.....+. ++.++|.+.++++++.-|..........
T Consensus 83 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~ 162 (235)
T TIGR03302 83 SGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR 162 (235)
T ss_pred cCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH
Confidence 45677889999999999999887 343333333333 6789999999999876655432211111
Q ss_pred ------HHHHHHHHHHcCCCCHHHHHHHHHHHHh-cCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 000227 1728 ------WVAYFNLENEYGNPPEEAVVKVFQRALQ-YCD---PKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1792 (1826)
Q Consensus 1728 ------W~a~l~lE~~~G~~~~e~~~~vf~~a~~-~~~---~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~ 1792 (1826)
+.+...+-...| +.+.|...|+++++ +++ ....|..++.+|...|++++|.++++...+.||+
T Consensus 163 ~~~~~~~~~~a~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~ 235 (235)
T TIGR03302 163 NRLAGKELYVARFYLKRG--AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD 235 (235)
T ss_pred HHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 112333444568 77999999999995 443 3589999999999999999999999999999873
No 239
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=96.20 E-value=0.026 Score=54.59 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=61.4
Q ss_pred CCCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEecc
Q 000227 1377 SPNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s 1450 (1826)
++||.|-|+|+.++..+-+|+|+....|.+|..++... .+..+..|++|++|-|+|.++++ ....+||...+
T Consensus 5 ~~gD~VIG~V~~~~~~~~~VdI~s~~~a~L~~~~f~ga-tk~~rp~L~~GDlV~ArV~~~~~-~~~~eLtc~~~ 76 (86)
T cd05790 5 AKGDHVIGIVVAKAGDFFKVDIGGSEPASLSYLAFEGA-TKRNRPNLNVGDLVYARVVKANR-DMEPELSCVDS 76 (86)
T ss_pred CCCCEEEEEEEEEcCCeEEEEcCCCcceEechHHcccc-cccccccCCCCCEEEEEEEecCC-CCCeEEEEeCC
Confidence 58999999999999999999999889999999876533 45566779999999999999996 45688888653
No 240
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.18 E-value=0.038 Score=71.65 Aligned_cols=127 Identities=11% Similarity=0.088 Sum_probs=95.6
Q ss_pred CCCCHHHHHHHHHhCCCchhHHHH-HHHHHHhc-------CCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcC
Q 000227 1668 APRTPDEFERLVRSSPNSSFVWIK-YMAFMLSM-------ADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG 1739 (1826)
Q Consensus 1668 ~p~s~~~fer~l~~~p~ss~lWi~-y~~f~l~~-------~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G 1739 (1826)
..++.+-|++++..+|+....|-. ++.+.++. ..+++|+.-+++|+.. +..... -.+|.++.-+....|
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al-~~~~~~--~~~~~ala~~~~~~g 434 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL-PELNVL--PRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc-ccCcCC--hHHHHHHHHHHHhcC
Confidence 345688899999999999887765 22333331 2467778888887543 111111 147777766666779
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHH
Q 000227 1740 NPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIEL 1800 (1826)
Q Consensus 1740 ~~~~e~~~~vf~~a~~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~ 1800 (1826)
+.+.|...|++|+..++..-.|..++++|...|++++|.+.|++++..-|..+ .|..+
T Consensus 435 --~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p-t~~~~ 492 (517)
T PRK10153 435 --KTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN-TLYWI 492 (517)
T ss_pred --CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc-hHHHH
Confidence 78999999999999998888999999999999999999999999999998655 34443
No 241
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.11 E-value=0.017 Score=66.59 Aligned_cols=138 Identities=12% Similarity=0.191 Sum_probs=95.9
Q ss_pred CCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh---h-----cccch----------hhhHHHHHH
Q 000227 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ---T-----INIRE----------ENEKLNIWV 1729 (1826)
Q Consensus 1668 ~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~---~-----i~~re----------~~e~~niW~ 1729 (1826)
+-.++-+||.-|..--.+=.=+|+|+++|..+.-+ +|..+-+.-+. + ||.+- -+.-..+|.
T Consensus 33 IvktRr~fE~rL~rr~~klnDf~~YI~yE~nlekl-RaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tnkff~D~k~w~ 111 (435)
T COG5191 33 IVKTRRKFELRLQRREKKLNDFMRYIKYECNLEKL-RAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTNKFFNDPKIWS 111 (435)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHH-HHHHHHHHHhcccccchhccccceeeEeeehhhhcCCCCcHHHH
Confidence 34456677766443333334578999998754433 11111111100 0 12111 111236999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhcC-CcHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 000227 1730 AYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGL-YERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTS 1807 (1826)
Q Consensus 1730 a~l~lE~~~G~~~~e~~~~vf~~a~~~~-~~~kv~~~~~~i-~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~ 1807 (1826)
.|++.-..-| .+-....+|-.+|+.+ ....+|+-.+.+ |...++++.||.+|.++++..+.++.+|+.|-+|++..
T Consensus 112 ~y~~Y~~k~k--~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~El~y 189 (435)
T COG5191 112 QYAAYVIKKK--MYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRMELMY 189 (435)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHHHHHH
Confidence 9999999888 7788999999999765 478999998876 46789999999999999999999999999999997665
Q ss_pred c
Q 000227 1808 I 1808 (1826)
Q Consensus 1808 ~ 1808 (1826)
.
T Consensus 190 i 190 (435)
T COG5191 190 I 190 (435)
T ss_pred H
Confidence 4
No 242
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.05 E-value=0.22 Score=65.48 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=84.4
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCc--
Q 000227 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-- 1759 (1826)
Q Consensus 1682 ~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~~-- 1759 (1826)
+|++-.+|.+.+.+-.++++|++||-++-||++.-|.. |..-..+..|=...| +...|..-|.+++|++++
T Consensus 203 ~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n-----~~~~~ers~L~~~~G--~~~~Am~~f~~l~~~~p~~d 275 (895)
T KOG2076|consen 203 NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSN-----WELIYERSSLYQKTG--DLKRAMETFLQLLQLDPPVD 275 (895)
T ss_pred CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcc-----hHHHHHHHHHHHHhC--hHHHHHHHHHHHHhhCCchh
Confidence 59999999999999999999999999999999866543 444456667777889 889999999999999882
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 000227 1760 ----KKVHLALLGLYERTEQNKLADELLYKMIKKFK 1791 (1826)
Q Consensus 1760 ----~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~ 1791 (1826)
...-..+++.|...++.+.|.+.++.++.++.
T Consensus 276 ~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 276 IERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 23333456667788888999999999999663
No 243
>KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.0049 Score=69.23 Aligned_cols=76 Identities=29% Similarity=0.517 Sum_probs=70.4
Q ss_pred cCCCCEEEEEEEEEeeceEEEEEec-CceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeecc
Q 000227 1466 LHVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1826)
Q Consensus 1466 ~~~G~iv~G~V~~v~~~GvFV~l~~-~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~s 1541 (1826)
..++++|-+.|+.|.+-|++|.|-. .++.|++-.||||..++..+.++.++|-.--|.|+.+|.+++-|-||.+.-
T Consensus 14 Pev~e~VmvnV~sIaemGayv~LlEYnniEGmiLlsELSrRRIRSI~klirVGr~E~vvVlrVDkekGYIDLSkrrV 90 (304)
T KOG2916|consen 14 PEVEEIVMVNVRSIAEMGAYVKLLEYNNIEGMILLSELSRRRIRSIQKLIRVGRNEPVVVLRVDKEKGYIDLSKRRV 90 (304)
T ss_pred CCcccEEEEEeeEehhccceEeeeecCCcccchhhhHHHHHHHHHHHHHHhcCCcceEEEEEEcCCCCceechhccC
Confidence 3579999999999999999999862 389999999999999999999999999999999999999999999998773
No 244
>KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification]
Probab=96.02 E-value=0.0063 Score=80.33 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=68.9
Q ss_pred cCCCCCEEEEEEEEEeece---EEEEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEecccc
Q 000227 758 HIHPNSVVHGYVCNIIETG---CFVRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSC 834 (1826)
Q Consensus 758 ~~~~G~~~~G~V~~i~~~G---vfV~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~~ 834 (1826)
.+..|..+.+.|++++..- |=|++.+|++|++|.+.+++..+.+|...+++||+|.|+|+++|.++=...||++.+.
T Consensus 982 t~~~g~iV~~~V~~vt~rr~~Cv~v~ld~G~~g~i~~~~~Sd~~v~~p~~~v~vgq~v~~kvi~id~e~f~v~Ls~r~sd 1061 (1299)
T KOG1856|consen 982 TFYEGAIVPVTVTKVTHRRGICVRVRLDCGVTGFILAKNLSDRDVRRPENRVKVGQTVYCKVIKIDKERFSVELSCRTSD 1061 (1299)
T ss_pred HhccCceEEEeeeEEEecccceeEEEecCCCceeeeccccChhhccCHHHhhccCceEEEEeeeeeHhhhhhhhhhhhHH
Confidence 3678999999999998766 6789999999999999999999999999999999999999999987766777777664
Q ss_pred c
Q 000227 835 C 835 (1826)
Q Consensus 835 ~ 835 (1826)
.
T Consensus 1062 l 1062 (1299)
T KOG1856|consen 1062 L 1062 (1299)
T ss_pred h
Confidence 3
No 245
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=96.00 E-value=0.015 Score=72.89 Aligned_cols=63 Identities=24% Similarity=0.408 Sum_probs=53.2
Q ss_pred ccCCCCEEEEEEEEEeec--eEEEEEecCceEEEEEccccCcc------------cccCccccCCCCCEEEEEEEEEe
Q 000227 1465 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSED------------HVDNIETIYRAGEKVKVKILKVD 1528 (1826)
Q Consensus 1465 ~~~~G~iv~G~V~~v~~~--GvFV~l~~~~v~Gl~h~sels~~------------~~~~~~~~~~~Gd~Vk~kVl~id 1528 (1826)
...+|++|.|+|++|.++ |+||+|+. +..|++|++++.+. ...++.+.+++||.|.|.|.+=-
T Consensus 22 ~~~vGnIY~GrV~~i~p~l~aAFVdiG~-~k~gfL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~G~~IlVQV~Ke~ 98 (414)
T TIGR00757 22 RQLKGNIYKGRVTRILPSLQAAFVDIGL-EKNGFLHASDIGPNYECLAPAEAKREAGPSISELLRPGQSVLVQVVKEP 98 (414)
T ss_pred cCCCCCEEEEEEeeecCCCceEEEEcCC-CceEEEEHHHcCchhhccccccccccccCCHHHhCcCCCEEEEEEeeCC
Confidence 456899999999999999 99999976 78999999998653 23345667999999999999943
No 246
>PRK05054 exoribonuclease II; Provisional
Probab=95.97 E-value=0.019 Score=76.39 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=58.0
Q ss_pred CCC--CEEEEEEEEEeeceEEEEEC-CCeEEEEeCCCcCcc---cc--cC------c-ccCCCCCCEEEEEEEEeeCCCC
Q 000227 760 HPN--SVVHGYVCNIIETGCFVRFL-GRLTGFAPRSKAVDG---QR--AD------L-SKTYYVGQSVRSNILDVNSETG 824 (1826)
Q Consensus 760 ~~G--~~~~G~V~~i~~~GvfV~f~-~gl~Glv~~s~l~~~---~~--~~------~-~~~f~vGq~V~~~V~~id~e~~ 824 (1826)
++| ..+.|.|+.++++|+||++. .++.||+|.+.+.+. +. .+ - ...|+.||.|+|+|.++|.+++
T Consensus 558 ~~G~~~~f~g~I~~v~~~G~fV~l~~~~veglV~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~lGd~V~V~v~~vd~~~~ 637 (644)
T PRK05054 558 KAGTDTRFAAEIIDISRGGMRVRLLENGAVAFIPASFLHAVRDELVCNQENGTVQIKGETVYKLGDVIDVTLAEVRMETR 637 (644)
T ss_pred ccCCCeEEEEEEEeeecCcEEEEEeCCceEEEEEccccCCCccceEEccccceEEEeCCEEEcCCCEEEEEEEEEccccC
Confidence 355 59999999999999999996 479999999998652 21 11 0 2469999999999999999999
Q ss_pred eEEEEe
Q 000227 825 RITLSL 830 (1826)
Q Consensus 825 rl~LSl 830 (1826)
++.+.+
T Consensus 638 ~i~~~~ 643 (644)
T PRK05054 638 SIIARP 643 (644)
T ss_pred eEEEEE
Confidence 998764
No 247
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.96 E-value=0.056 Score=67.18 Aligned_cols=103 Identities=8% Similarity=0.083 Sum_probs=83.1
Q ss_pred HHhcccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCC
Q 000227 1661 ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1740 (1826)
Q Consensus 1661 ~~~~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~ 1740 (1826)
....+++-.++..-|++++..+|++..+|..++..++++++++.|...+++|+..-+.. ...|..+..+-...|
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-----~~a~~~lg~~~~~lg- 84 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSL-----AKAYLRKGTACMKLE- 84 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-----HHHHHHHHHHHHHhC-
Confidence 33446677788999999999999999999999999999999999999999998754432 236777777778889
Q ss_pred CCHHHHHHHHHHHHhcC-CcHHHHHHHHHHH
Q 000227 1741 PPEEAVVKVFQRALQYC-DPKKVHLALLGLY 1770 (1826)
Q Consensus 1741 ~~~e~~~~vf~~a~~~~-~~~kv~~~~~~i~ 1770 (1826)
.++.|...|++|++.. +...++..+..+.
T Consensus 85 -~~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 85 -EYQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8899999999999765 4455555544443
No 248
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.87 E-value=0.062 Score=67.07 Aligned_cols=129 Identities=15% Similarity=0.124 Sum_probs=108.2
Q ss_pred CCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCC-CHHH
Q 000227 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP-PEEA 1745 (1826)
Q Consensus 1667 ~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~-~~e~ 1745 (1826)
...++..-|+++|+..|..+..-=..+...-|+|++++|-.....||+.-|. .=-||-||=+.|.+- +...
T Consensus 369 ~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~--------fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 369 KIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT--------FADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred cchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch--------HHHHHHhcchHHHHhhhHHH
Confidence 3555577899999999999998888899999999999999999999864332 345788887766311 7789
Q ss_pred HHHHHHHHHhcCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 000227 1746 VVKVFQRALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSF 1803 (1826)
Q Consensus 1746 ~~~vf~~a~~~~~~-~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~ 1803 (1826)
|.+-|.||+|.|+. ...|..++.||.++|++..|.+-|++++|.-|..+..+...+..
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 99999999999875 68899999999999999999999999999999888877666654
No 249
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=95.86 E-value=0.057 Score=58.84 Aligned_cols=71 Identities=28% Similarity=0.437 Sum_probs=61.0
Q ss_pred CCCCCEEEEEEEEEecceEEEEeCC----------CeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEE
Q 000227 1376 LSPNMIVQGYVKNVTSKGCFIMLSR----------KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEV 1445 (1826)
Q Consensus 1376 l~~G~~v~G~V~~v~~~GvFV~l~~----------~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~l 1445 (1826)
++.|++|-|.|+++....+.|++.. ...|-+|+|+.++.|+++..+.|++|+.|+++|++.- -.+.|
T Consensus 62 ~K~GdiV~grV~~v~~~~a~V~i~~ve~~~r~~~~~~~~~ihvs~~~~~~~~~~~d~f~~GDivrA~Vis~~---~~~~L 138 (188)
T COG1096 62 PKGGDIVYGRVTDVREQRALVRIVGVEGKERELATSGAADIHVSQVRDGYVEKLSDAFRIGDIVRARVISTG---DPIQL 138 (188)
T ss_pred CCCCCEEEEEEeeccceEEEEEEEEEecccccCCCCceeeEEEEecccccccccccccccccEEEEEEEecC---CCeEE
Confidence 6899999999999999988887741 2567899999999999999999999999999999974 35777
Q ss_pred EEec
Q 000227 1446 TLKT 1449 (1826)
Q Consensus 1446 Slk~ 1449 (1826)
|.+.
T Consensus 139 st~~ 142 (188)
T COG1096 139 STKG 142 (188)
T ss_pred EecC
Confidence 7754
No 250
>KOG1856 consensus Transcription elongation factor SPT6 [RNA processing and modification]
Probab=95.82 E-value=0.0079 Score=79.46 Aligned_cols=80 Identities=29% Similarity=0.358 Sum_probs=72.4
Q ss_pred ccCCCCCEEEEEEEEEecce---EEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEEEeCCCCeEEEEEecc
Q 000227 1374 EDLSPNMIVQGYVKNVTSKG---CFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS 1450 (1826)
Q Consensus 1374 ~~l~~G~~v~G~V~~v~~~G---vFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s 1450 (1826)
+.+-+|.+|.+.|++|+..- +-|.+..|++|+|+.+++|+.-+.+|...+++||.|.|+|+++|.++=.+.||+|.+
T Consensus 981 et~~~g~iV~~~V~~vt~rr~~Cv~v~ld~G~~g~i~~~~~Sd~~v~~p~~~v~vgq~v~~kvi~id~e~f~v~Ls~r~s 1060 (1299)
T KOG1856|consen 981 ETFYEGAIVPVTVTKVTHRRGICVRVRLDCGVTGFILAKNLSDRDVRRPENRVKVGQTVYCKVIKIDKERFSVELSCRTS 1060 (1299)
T ss_pred hHhccCceEEEeeeEEEecccceeEEEecCCCceeeeccccChhhccCHHHhhccCceEEEEeeeeeHhhhhhhhhhhhH
Confidence 34789999999999997654 567889999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 000227 1451 DSR 1453 (1826)
Q Consensus 1451 ~~~ 1453 (1826)
+..
T Consensus 1061 dlk 1063 (1299)
T KOG1856|consen 1061 DLK 1063 (1299)
T ss_pred Hhh
Confidence 754
No 251
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.81 E-value=0.26 Score=61.17 Aligned_cols=134 Identities=10% Similarity=0.006 Sum_probs=93.3
Q ss_pred CCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000227 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1826)
Q Consensus 1667 ~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~ 1746 (1826)
..-....-+..++...|++..+|-.-.+..+..+...+|-+-+++|+..-|..- =+|+-|.+.-...| +...+
T Consensus 321 ~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~-----~l~~~~a~all~~g--~~~ea 393 (484)
T COG4783 321 QYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP-----LLQLNLAQALLKGG--KPQEA 393 (484)
T ss_pred ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-----HHHHHHHHHHHhcC--ChHHH
Confidence 344455566666777788887777777777777778888888888776555432 26777777777777 44677
Q ss_pred HHHHHHHH-hcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 000227 1747 VKVFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSI 1808 (1826)
Q Consensus 1747 ~~vf~~a~-~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~ 1808 (1826)
..++++.+ +.++....|..+++-|.+.|+..+|.+.+..+...-. ...=|+.++...-+++
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G-~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAG-RLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhc
Confidence 77777777 5666777777788888888887777777777765544 4666666666655544
No 252
>PTZ00162 DNA-directed RNA polymerase II subunit 7; Provisional
Probab=95.73 E-value=0.035 Score=61.53 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=54.9
Q ss_pred CCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCccCC-------C-----CccCCCCcEEEEEEEEEeCCC--CeE
Q 000227 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGYVES-------P-----EKEFPIGKLVAGRVLSVEPLS--KRV 1443 (1826)
Q Consensus 1378 ~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~v~~-------~-----~~~f~vGq~V~~kVl~vd~e~--~rI 1443 (1826)
.|+++.|.|+++++.|+||++| -++++||.+.|.+.+.-+ | +..+.+|+.|++||+++..+. .++
T Consensus 81 ~gEVv~g~V~~v~~~G~~v~~G-p~~ifI~~~~l~~~~~fd~~~~~~~~~~~~~~~~i~~g~~VR~rV~~v~~~~~~~~~ 159 (176)
T PTZ00162 81 KDEVLDAIVTDVNKLGFFAQAG-PLKAFVSRSAIPPDFVYDSDSAYPCYISSDGQIQIKPNTEVRLRLQGVRYDASNLFA 159 (176)
T ss_pred CCCEEEEEEEEEecceEEEEee-CeEEEEcHHHCCCccEECCCCCcceEecCCCcEEECCCCEEEEEEEEEEecCCCcEE
Confidence 6999999999999999999999 566999999998542211 1 346789999999998875433 345
Q ss_pred EEEEecc
Q 000227 1444 EVTLKTS 1450 (1826)
Q Consensus 1444 ~lSlk~s 1450 (1826)
-+|+|+.
T Consensus 160 i~T~~~~ 166 (176)
T PTZ00162 160 IATINSD 166 (176)
T ss_pred EEEecCC
Confidence 5566553
No 253
>PF13509 S1_2: S1 domain; PDB: 3GO5_A.
Probab=95.73 E-value=0.029 Score=50.86 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=36.5
Q ss_pred CCcEEEEEEEEEecCcEEEEeCCCeEEeecCCCcccccccCCCCCcCCCCEEEEEEEEE-eCCeEEEEec
Q 000227 498 PGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHK 566 (1826)
Q Consensus 498 ~G~iv~g~V~~v~~~G~~V~i~~~v~G~Vp~~hlsd~~l~~p~~~fkvG~~Vk~rVL~v-~~~~i~LSlK 566 (1826)
.|++.+.+|.+++++|++++.+++-+-++|..++. ..+++|++|.+ .+|. ..+|+..|+|
T Consensus 1 iG~~~~L~V~~~~~~g~fL~~~~~~~vlLp~~e~~--------~~~~~Gd~v~V-FvY~D~~~rl~AT~k 61 (61)
T PF13509_consen 1 IGQINTLKVVDKNEFGYFLDDGEGKEVLLPKSEVP--------EPLKVGDEVEV-FVYLDKEGRLVATTK 61 (61)
T ss_dssp --------EEEE-SSEEEEEETT-EEEEEEGGG--------------TTSEEEE-EEEE-TTS-EEEE--
T ss_pred CCCCcceEEEEEeCCEEEEECCCCCEEEechHHcC--------CCCCCCCEEEE-EEEECCCCCEEEecC
Confidence 48899999999999999999987799999987653 25899999999 5677 5679999875
No 254
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.71 E-value=0.042 Score=69.85 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=109.8
Q ss_pred CCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHH----------------------
Q 000227 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL---------------------- 1725 (1826)
Q Consensus 1668 ~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~---------------------- 1725 (1826)
--++..-|+++-...+|.+.+-.+-..-+.++.++++|+++++++=+.=|+|-+.--.
T Consensus 335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li 414 (638)
T KOG1126|consen 335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLI 414 (638)
T ss_pred HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344678999778889999666777888888899999999999995555544321100
Q ss_pred -------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-----------------------------------cHHHH
Q 000227 1726 -------NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-----------------------------------PKKVH 1763 (1826)
Q Consensus 1726 -------niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~-----------------------------------~~kv~ 1763 (1826)
+-|-|+=|+=...+ +.++|.+-|+||+|..+ ++..|
T Consensus 415 ~~~~~sPesWca~GNcfSLQk--dh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAw 492 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQK--DHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAW 492 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhh--HHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHH
Confidence 57999999988889 89999999999999333 67778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccc
Q 000227 1764 LALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILSI 1811 (1826)
Q Consensus 1764 ~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~~ 1811 (1826)
.-+.-+|.+.++++.|.--|++|+.-.|.+.-+-.-++.++...+.+.
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d 540 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKD 540 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhh
Confidence 888888888888888888888888888877777777777776655543
No 255
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.71 E-value=0.13 Score=58.50 Aligned_cols=105 Identities=13% Similarity=0.090 Sum_probs=88.3
Q ss_pred cCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCcHHHHHHHHHH-HHHcCC-
Q 000227 1699 MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY-CDPKKVHLALLGL-YERTEQ- 1775 (1826)
Q Consensus 1699 ~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~-~~~~kv~~~~~~i-~~~~~~- 1775 (1826)
..+.+++-.-++++++.-|.. ...|..+-.+-...| +.+.|...|++|++. ++...+|..++.+ |.+.|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~-----~~~w~~Lg~~~~~~g--~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~ 124 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN-----SEQWALLGEYYLWRN--DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH 124 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC
Confidence 455677777888887644433 347999999888999 889999999999965 5689999999996 577787
Q ss_pred -hHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 000227 1776 -NKLADELLYKMIKKFKHSCKVIIELLSFHFTSILS 1810 (1826)
Q Consensus 1776 -~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~ 1810 (1826)
+++|+++|+++++..|+....|...|..++.+|+-
T Consensus 125 ~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~ 160 (198)
T PRK10370 125 MTPQTREMIDKALALDANEVTALMLLASDAFMQADY 160 (198)
T ss_pred CcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCH
Confidence 59999999999999999999999999999888763
No 256
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=0.17 Score=57.61 Aligned_cols=103 Identities=16% Similarity=0.205 Sum_probs=75.7
Q ss_pred CcCCCCEEEEEEEEE---eCCeEEEEecchhhccchhhccccccccCCcEEEEEEEEEecceEEEEEcCCeEEEEeCccc
Q 000227 542 KFKVGAELVFRVLGV---KSKRITVTHKKTLVKSKLAILSSYAEATDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSEL 618 (1826)
Q Consensus 542 ~fkvG~~Vk~rVL~v---~~~~i~LSlK~~Lv~~~~~~~~s~~~~~~G~~~~G~V~~i~~~G~~V~~~~gv~G~vp~sel 618 (1826)
.|..|+++.+.|... ..+.+.+= |.-..|- -++|+++.|.|+.+...+..|++.+...+++|.|++
T Consensus 29 ty~~~~~iyssv~G~~~~~~~~v~VI----------pl~g~Yi-P~~gD~VIG~I~~v~~~~W~VDI~sp~~A~L~ls~~ 97 (239)
T COG1097 29 TYFEGGKIYSSVVGLLDVKGKLVRVI----------PLEGRYI-PEVGDVVIGKIIEVGPSGWKVDIGSPYPALLSLSDF 97 (239)
T ss_pred cEecCCEEEEEEEeEEEEeCCEEEEE----------eCCCccc-CCCCCEEEEEEEEEcccceEEEcCCccceEeehhhh
Confidence 566788888777765 22332211 1111231 147999999999999999999998889999999999
Q ss_pred CCCC----CCCCCCCccCCCEEEEEEEEEccCCCEEEEEEee
Q 000227 619 GLDP----GCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMM 656 (1826)
Q Consensus 619 ~~~~----~~~~~~~~~vGq~V~vrVl~vd~~~~ri~lS~k~ 656 (1826)
-... ..+++..|.+|+.|.|+|.++|+. ....|+++.
T Consensus 98 ~~r~~~~~~~~~r~~l~vGD~v~AkV~~vd~~-~~~~L~~k~ 138 (239)
T COG1097 98 LRRKFENAEKDLRPFLNVGDLVYAKVVDVDRD-GEVELTLKD 138 (239)
T ss_pred hcccccccccccccccccCCEEEEEEEEccCC-CceEEEeec
Confidence 3322 246678999999999999999964 677888854
No 257
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.68 E-value=0.093 Score=55.19 Aligned_cols=97 Identities=10% Similarity=-0.082 Sum_probs=75.5
Q ss_pred HHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000227 1708 IAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ-YCDPKKVHLALLGLYERTEQNKLADELLYKM 1786 (1826)
Q Consensus 1708 i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~-~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~ 1786 (1826)
.+++|+..-|.. .....++++. -...| ..+.|...|+++++ .++...+|..++.+|...++++.|.++|+++
T Consensus 5 ~~~~~l~~~p~~---~~~~~~~a~~--~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 5 TLKDLLGLDSEQ---LEQIYALAYN--LYQQG--RYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred hHHHHHcCChhh---HHHHHHHHHH--HHHcc--cHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456676433221 1112334433 34568 77999999999997 4568899999999999999999999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhccccc
Q 000227 1787 IKKFKHSCKVIIELLSFHFTSILSI 1811 (1826)
Q Consensus 1787 ~kk~~~~~~~w~~~~~~~~~~~~~~ 1811 (1826)
++..|..+.+|..++.+++..++..
T Consensus 78 ~~~~p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 78 AALDPDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HhcCCCChHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998887643
No 258
>PRK12328 nusA transcription elongation factor NusA; Provisional
Probab=95.68 E-value=0.033 Score=67.72 Aligned_cols=107 Identities=19% Similarity=0.273 Sum_probs=76.2
Q ss_pred CcCCCCEEEEEEEEEe-CCeEEEEecchhhcc-----chhhccccccccCCcEEEEEEEEEecc-eEEEEEcCCeEEEEe
Q 000227 542 KFKVGAELVFRVLGVK-SKRITVTHKKTLVKS-----KLAILSSYAEATDRLITHGWITKIEKH-GCFVRFYNGVQGFAP 614 (1826)
Q Consensus 542 ~fkvG~~Vk~rVL~v~-~~~i~LSlK~~Lv~~-----~~~~~~s~~~~~~G~~~~G~V~~i~~~-G~~V~~~~gv~G~vp 614 (1826)
.+++|+.+..-+---+ .+...-|.|+.+... +..++..|.+ +.|+++.|+|.++... ++||++ |++.|++|
T Consensus 90 ~~~vGd~i~~~i~~~~fgRiaaq~akq~i~Qkir~~er~~i~~ey~~-~~Geiv~g~V~r~~~~~~i~vdl-g~~ea~LP 167 (374)
T PRK12328 90 SVEIGDELTYELSLENMGRTAANTLFKELEYHIQRLLEESIFEKYKK-KVGKIVFGTVVRVDNEENTFIEI-DEIRAVLP 167 (374)
T ss_pred CCCCCCEEEEecChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEEEEEEecCCCEEEEc-CCeEEEeC
Confidence 5899999987543222 233334455554221 0112233322 5899999999999864 589999 68999999
Q ss_pred CcccCCCCCCCCCCCccCCCEEEEEEEEEccCCC---EEEEEEee
Q 000227 615 RSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASR---RINLSFMM 656 (1826)
Q Consensus 615 ~sel~~~~~~~~~~~~~vGq~V~vrVl~vd~~~~---ri~lS~k~ 656 (1826)
.++.. |.+.|++|+.++|.|.+++...+ .+.||...
T Consensus 168 ~~eqi------p~E~~~~Gdrik~~i~~V~~~~k~gp~IilSRt~ 206 (374)
T PRK12328 168 MKNRI------KGEKFKVGDVVKAVLKRVKIDKNNGILIELSRTS 206 (374)
T ss_pred HHHcC------CCCcCCCCCEEEEEEEEEecCCCCCCEEEEEcCC
Confidence 99984 56789999999999999998765 78888753
No 259
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.58 E-value=0.16 Score=57.36 Aligned_cols=116 Identities=10% Similarity=0.035 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCcHHHHHH
Q 000227 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY-CDPKKVHLA 1765 (1826)
Q Consensus 1687 ~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~-~~~~kv~~~ 1765 (1826)
.+-|+.+=-+|+.|+...|+.-+|.||+.-|... ..|..+...=...| ..+.|++-|++|++. ++.-.|...
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~-----~a~~~~A~~Yq~~G--e~~~A~e~YrkAlsl~p~~GdVLNN 108 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY-----LAHLVRAHYYQKLG--ENDLADESYRKALSLAPNNGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-----HHHHHHHHHHHHcC--ChhhHHHHHHHHHhcCCCccchhhh
Confidence 4556666667899999999999999997554433 37999999999999 779999999999965 568999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHhccc
Q 000227 1766 LLGLYERTEQNKLADELLYKMIK--KFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1766 ~~~i~~~~~~~~~a~~~~~~~~k--k~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
|.-|++..|++++|...|++++. -|++....|.+.+-+-+++|.
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC
Confidence 99999999999999999999997 468889999999888777664
No 260
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.48 E-value=0.44 Score=52.77 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=77.8
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CcHHH
Q 000227 1684 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKV 1762 (1826)
Q Consensus 1684 ~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~-~~~kv 1762 (1826)
.....|...+...++.+++++|...+++|++.-+.. .+...+|..+..+=...| ..+.|...|++|++.. +....
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP--NDRSYILYNMGIIYASNG--EHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--chHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCcccHHH
Confidence 455567778888889999999999999998643221 122456777777777789 7899999999999754 46777
Q ss_pred HHHHHHHHHHcCC--------------hHHHHHHHHHHHHHcCC
Q 000227 1763 HLALLGLYERTEQ--------------NKLADELLYKMIKKFKH 1792 (1826)
Q Consensus 1763 ~~~~~~i~~~~~~--------------~~~a~~~~~~~~kk~~~ 1792 (1826)
|..++.+|...++ +++|.++|+++++..|.
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~ 152 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN 152 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence 8888888887776 45666666666666554
No 261
>PRK14574 hmsH outer membrane protein; Provisional
Probab=95.47 E-value=0.16 Score=69.20 Aligned_cols=120 Identities=9% Similarity=0.027 Sum_probs=96.2
Q ss_pred ccCCCCCHHHHHHHHHhCCCch-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCH
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSS-FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1743 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss-~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~ 1743 (1826)
+++..++.+.|++++..+|++. .++ .++.+....|+.+.|+.++++|+..-|. ....-.+...+-...| +.
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~-----~~~~llalA~ly~~~g--dy 118 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNI-----SSRGLASAARAYRNEK--RW 118 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCC-----CHHHHHHHHHHHHHcC--CH
Confidence 3455588999999999999996 444 8888888889999999999999721111 1122333344556779 78
Q ss_pred HHHHHHHHHHHh-cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 000227 1744 EAVVKVFQRALQ-YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1792 (1826)
Q Consensus 1744 e~~~~vf~~a~~-~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~ 1792 (1826)
+.|.++|+++++ .++...++..++.+|.+.++.++|.+.++++++.+|.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 999999999994 5667888989999999999999999999999999996
No 262
>TIGR00757 RNaseEG ribonuclease, Rne/Rng family. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome.
Probab=95.45 E-value=0.033 Score=69.78 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=50.6
Q ss_pred CCCCCEEEEEEEEEecc--eEEEEeCCCeEEEEEccccCCCc------------cCCCCccCCCCcEEEEEEEE
Q 000227 1376 LSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSDGY------------VESPEKEFPIGKLVAGRVLS 1435 (1826)
Q Consensus 1376 l~~G~~v~G~V~~v~~~--GvFV~l~~~v~g~v~iselsd~~------------v~~~~~~f~vGq~V~~kVl~ 1435 (1826)
..+|+++.|+|+++.+. |+||+||.+..||+|++|+.+.+ .++..+.+++||.|.+.|+.
T Consensus 23 ~~vGnIY~GrV~~i~p~l~aAFVdiG~~k~gfL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~G~~IlVQV~K 96 (414)
T TIGR00757 23 QLKGNIYKGRVTRILPSLQAAFVDIGLEKNGFLHASDIGPNYECLAPAEAKREAGPSISELLRPGQSVLVQVVK 96 (414)
T ss_pred CCCCCEEEEEEeeecCCCceEEEEcCCCceEEEEHHHcCchhhccccccccccccCCHHHhCcCCCEEEEEEee
Confidence 45899999999999998 99999999999999999997632 22334568999999999876
No 263
>PF13509 S1_2: S1 domain; PDB: 3GO5_A.
Probab=95.45 E-value=0.058 Score=48.96 Aligned_cols=61 Identities=18% Similarity=0.150 Sum_probs=36.4
Q ss_pred CCcEEEEEEEEEecceEEEEEcCCeEEEEeCcccCCCCCCCCCCCccCCCEEEEEEEEEccCCCEEEEEEe
Q 000227 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFM 655 (1826)
Q Consensus 585 ~G~~~~G~V~~i~~~G~~V~~~~gv~G~vp~sel~~~~~~~~~~~~~vGq~V~vrVl~vd~~~~ri~lS~k 655 (1826)
.|++...+|..+.++|+|++..++-.-|+|.+++. ..+++|+.|.|.|.. |.+ +|+.+|++
T Consensus 1 iG~~~~L~V~~~~~~g~fL~~~~~~~vlLp~~e~~--------~~~~~Gd~v~VFvY~-D~~-~rl~AT~k 61 (61)
T PF13509_consen 1 IGQINTLKVVDKNEFGYFLDDGEGKEVLLPKSEVP--------EPLKVGDEVEVFVYL-DKE-GRLVATTK 61 (61)
T ss_dssp --------EEEE-SSEEEEEETT-EEEEEEGGG--------------TTSEEEEEEEE--TT-S-EEEE--
T ss_pred CCCCcceEEEEEeCCEEEEECCCCCEEEechHHcC--------CCCCCCCEEEEEEEE-CCC-CCEEEecC
Confidence 37888899999999999999877799999999985 237899999999874 544 58888764
No 264
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=95.41 E-value=0.51 Score=58.67 Aligned_cols=122 Identities=10% Similarity=-0.058 Sum_probs=77.5
Q ss_pred HhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHH--HHcCCCCHHHHHHHHHHHH-hc
Q 000227 1680 RSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE--NEYGNPPEEAVVKVFQRAL-QY 1756 (1826)
Q Consensus 1680 ~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE--~~~G~~~~e~~~~vf~~a~-~~ 1756 (1826)
...|..-..|---+--.++.+++++||..+.-=++..|. |.|..-+.-| ...+ ..+.|.+-|++|+ ++
T Consensus 300 ~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-------N~~~~~~~~~i~~~~n--k~~~A~e~~~kal~l~ 370 (484)
T COG4783 300 RSKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD-------NPYYLELAGDILLEAN--KAKEAIERLKKALALD 370 (484)
T ss_pred HhCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhcC
Confidence 333555556655566666677777777777665554442 3444443333 3344 4566777777777 55
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 000227 1757 CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILS 1810 (1826)
Q Consensus 1757 ~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~ 1810 (1826)
|+..-+|+.|++.|.+.|++.+|..++++.++..|..+..|-.+|+.|-.+|+.
T Consensus 371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 666667777777777777777777777777777777777777777777666654
No 265
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=95.37 E-value=0.14 Score=55.14 Aligned_cols=93 Identities=13% Similarity=-0.083 Sum_probs=76.4
Q ss_pred HHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHH
Q 000227 1707 SIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY-CDPKKVHLALLGLYERTEQNKLADELLYK 1785 (1826)
Q Consensus 1707 ~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~ 1785 (1826)
..+++|+..=| + -|.++...-..-| ..+.+...|++|++. ++....|..++.++.+.|++++|.+.|++
T Consensus 14 ~~~~~al~~~p-----~---~~~~~g~~~~~~g--~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 14 DILKQLLSVDP-----E---TVYASGYASWQEG--DYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHcCH-----H---HHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 46677764221 1 2444444456788 789999999999976 45899999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1786 MIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1786 ~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
+++..|..+..|...+..+...|.
T Consensus 84 Al~l~p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 84 ALMLDASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHhcCCCCcHHHHHHHHHHHHcCC
Confidence 999999999999999999887765
No 266
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=95.30 E-value=0.12 Score=52.52 Aligned_cols=82 Identities=16% Similarity=0.071 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-c---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHH
Q 000227 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-P---KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVII 1798 (1826)
Q Consensus 1726 niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~-~---~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~---~~~w~ 1798 (1826)
++|+.....-...| +.+.|.+.|+++++..+ . ...++.++.+|.+.++++.|.++|+.++..+|.. ...|.
T Consensus 3 ~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAG--DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 35667777777789 88999999999996543 3 4789999999999999999999999999999875 67899
Q ss_pred HHHHHHHhccc
Q 000227 1799 ELLSFHFTSIL 1809 (1826)
Q Consensus 1799 ~~~~~~~~~~~ 1809 (1826)
..+.++...+.
T Consensus 81 ~~~~~~~~~~~ 91 (119)
T TIGR02795 81 KLGMSLQELGD 91 (119)
T ss_pred HHHHHHHHhCC
Confidence 99988876654
No 267
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=95.28 E-value=0.22 Score=61.63 Aligned_cols=137 Identities=12% Similarity=-0.047 Sum_probs=97.9
Q ss_pred cCCCCCHHHHHHHHHhCCCc---hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHH---HHHHHHHHcC
Q 000227 1666 KDAPRTPDEFERLVRSSPNS---SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV---AYFNLENEYG 1739 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~s---s~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~---a~l~lE~~~G 1739 (1826)
++.|....-|.++....|.+ ...+.-.+...+..+++++|.+++++++...|... ..|. ++..+-...|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-----~a~~~~~~~~~~~~~~~ 94 (355)
T cd05804 20 GERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL-----LALKLHLGAFGLGDFSG 94 (355)
T ss_pred CCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-----HHHHHhHHHHHhccccc
Confidence 34555577777777777644 34566667778889999999999999998765433 2444 3333333345
Q ss_pred CCCHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1740 NPPEEAVVKVFQRALQ-YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1740 ~~~~e~~~~vf~~a~~-~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
..+.+...++.+.. .++..-.+..++.++...|++++|.+.|+++++.-|.++..|..++..++.+|.
T Consensus 95 --~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 95 --MRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred --CchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 44566666655332 233444555677899999999999999999999999999999999999877665
No 268
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.27 E-value=0.25 Score=69.35 Aligned_cols=115 Identities=11% Similarity=-0.023 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh----cCCcH
Q 000227 1686 SFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ----YCDPK 1760 (1826)
Q Consensus 1686 s~lWi~y~~f~l~~~ei~kAR~i~erAl~~-i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~----~~~~~ 1760 (1826)
...|-..+.-..+.|++++|.+++++..+. +... .-.|..+|+.=...| ..+.|.++|+++.. ..+..
T Consensus 507 vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-----~vTYnsLI~a~~k~G--~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-----RVVFNALISACGQSG--AVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhcCCCCCcH
Confidence 344555555555555555555555444321 0000 123444444444444 44555555554432 12333
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhc
Q 000227 1761 KVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVIIELLSFHFTS 1807 (1826)
Q Consensus 1761 kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~-~~~~~~w~~~~~~~~~~ 1807 (1826)
..|..++..|.+.|++++|.++|+.|.++- +....+|...+..|.+.
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~ 627 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK 627 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 444455555555555555555555554432 22344444444444433
No 269
>PF10447 EXOSC1: Exosome component EXOSC1/CSL4; InterPro: IPR019495 The exosome mediates degradation of unstable mRNAs that contain AU-rich elements (AREs) within their 3' untranslated regions []. The proteins in this entry are components of the exosome 3'->5' exoribonuclease complex. They do not have exonuclease activity, but are required for the 3'-processing of the 7S pre-RNA to the mature 5.8S rRNA and for mRNA decay [, ].; PDB: 2NN6_I.
Probab=95.27 E-value=0.043 Score=52.61 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=41.5
Q ss_pred CCCCEEEEEEEEEecceEEEEeC------------------CCeEEEEEccccCCCccC--CCCccCCCCcEEEEEEEEE
Q 000227 1377 SPNMIVQGYVKNVTSKGCFIMLS------------------RKLDAKVLLSNLSDGYVE--SPEKEFPIGKLVAGRVLSV 1436 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~~GvFV~l~------------------~~v~g~v~iselsd~~v~--~~~~~f~vGq~V~~kVl~v 1436 (1826)
++|++|.|+|+++++.-+++.|- ....|.++.+|+-..+.. +..+.|++|+.|.++|+++
T Consensus 3 ~vGdiV~~rVtrv~~~~a~v~Il~v~~~~~~~~~~~~~~l~~~f~GiIR~~DVR~te~Dkv~~~~~FrpGDIVrA~ViSl 82 (82)
T PF10447_consen 3 KVGDIVIARVTRVNPRQAKVEILCVEGKGNDSINAGDRPLKEPFQGIIRKQDVRATEKDKVKMYDCFRPGDIVRARVISL 82 (82)
T ss_dssp -TT-EEEEEEEEE-SSEEEEEEEES----------SSS----SS-S-EEEEGGGT-SS----GGGT--SSSEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEEEEEeccccccccCCcccccccEEEEEeeeecccccchhhHHhccCCCCEEEEEEeeC
Confidence 58999999999999988877652 346789999998776554 3578999999999999984
No 270
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=95.26 E-value=0.094 Score=55.03 Aligned_cols=100 Identities=16% Similarity=0.243 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHH-HcCC-CCHHHHHHHHHHHHhc-CC---------cHHHHHHHHHH
Q 000227 1702 VEKARSIAERALQTINIREENEKLNIWVAYFNLEN-EYGN-PPEEAVVKVFQRALQY-CD---------PKKVHLALLGL 1769 (1826)
Q Consensus 1702 i~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~-~~G~-~~~e~~~~vf~~a~~~-~~---------~~kv~~~~~~i 1769 (1826)
+++.|+-+|..+.... +....|.+|..|++--. .|.. .....+..+++|+++. .+ -.++|++|+.+
T Consensus 1 ~~~~r~~~e~~i~~~~--~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~ 78 (126)
T PF08311_consen 1 LEQQRQEFEEQIRSYE--EGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADL 78 (126)
T ss_dssp -HHHHHHHHHHHHCCG--GSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcc--CCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHH
Confidence 4678899999987765 55678999999998554 4531 0457888999999952 22 25667777764
Q ss_pred HHHcCChHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhccc
Q 000227 1770 YERTEQNKLADELLYKMIKKF--KHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1770 ~~~~~~~~~a~~~~~~~~kk~--~~~~~~w~~~~~~~~~~~~ 1809 (1826)
.+.++++|+-|..+- .+.+..|+.||.++...++
T Consensus 79 ------~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~ 114 (126)
T PF08311_consen 79 ------SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGN 114 (126)
T ss_dssp ------BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-
T ss_pred ------ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCC
Confidence 239999999999755 6679999999999998875
No 271
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.25 E-value=0.17 Score=62.15 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=99.1
Q ss_pred CCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000227 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1826)
Q Consensus 1668 ~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~ 1747 (1826)
..+.-.+|..+...+|+++.++-...+..+-+++++.|-+=++.|+.. + .|..--++..--++...+ ..+.++
T Consensus 376 ~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L---~--pe~~~~~iQl~~a~Yr~~--k~~~~m 448 (606)
T KOG0547|consen 376 SEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL---D--PENAYAYIQLCCALYRQH--KIAESM 448 (606)
T ss_pred cHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc---C--hhhhHHHHHHHHHHHHHH--HHHHHH
Confidence 556789999999999999999999988888899999999999999642 2 222222334444455667 679999
Q ss_pred HHHHHHH-hcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 000227 1748 KVFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1792 (1826)
Q Consensus 1748 ~vf~~a~-~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~ 1792 (1826)
..|+.+. .||....+|.-+++|+.+.+++++|.+.|..++..-|.
T Consensus 449 ~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 449 KTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9999999 89999999999999999999999999999999988877
No 272
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.17 E-value=0.02 Score=52.62 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc
Q 000227 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI 1718 (1826)
Q Consensus 1667 ~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~ 1718 (1826)
+..++..-|++++..+|++..+|+.++...++.|++++|+.++++++..-+.
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3455678899999999999999999999999999999999999999876554
No 273
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.16 E-value=0.22 Score=55.18 Aligned_cols=82 Identities=7% Similarity=0.002 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC----cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHH
Q 000227 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD----PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELL 1801 (1826)
Q Consensus 1726 niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~----~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~ 1801 (1826)
..|..+..+...-| +.+.|...|++|+...+ ...+|..++.+|.+.|+++.|.+.|+++++..|.....|..++
T Consensus 36 ~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADG--EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 35666666667779 88999999999996532 2468999999999999999999999999999999999999999
Q ss_pred HHHHhccc
Q 000227 1802 SFHFTSIL 1809 (1826)
Q Consensus 1802 ~~~~~~~~ 1809 (1826)
..+...+.
T Consensus 114 ~~~~~~g~ 121 (172)
T PRK02603 114 VIYHKRGE 121 (172)
T ss_pred HHHHHcCC
Confidence 99877664
No 274
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.16 E-value=0.24 Score=69.46 Aligned_cols=110 Identities=14% Similarity=0.091 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhC-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cccchhhhHHHHHHHHHHHHHHcCCCCHHHHHH
Q 000227 1671 TPDEFERLVRSS-PNSSFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPEEAVVK 1748 (1826)
Q Consensus 1671 s~~~fer~l~~~-p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~-i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~ 1748 (1826)
+..-|+++...+ +.+...|-..+....+.|++++|.+++++..+. +... ...|.++++.=...| ..+.|.+
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-----~~TynsLI~a~~k~G--~~eeA~~ 670 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-----EVFFSALVDVAGHAG--DLDKAFE 670 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhCC--CHHHHHH
Confidence 344444444433 223445555555555555555555555554331 0000 113444444434444 3344444
Q ss_pred HHHHHHhc--CCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000227 1749 VFQRALQY--CDPKKVHLALLGLYERTEQNKLADELLYKMI 1787 (1826)
Q Consensus 1749 vf~~a~~~--~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~ 1787 (1826)
+|+++.+. .+...+|..++..|.+.|++++|.++|+.|.
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44444421 2333444444444444444444444444443
No 275
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.11 E-value=0.19 Score=60.48 Aligned_cols=119 Identities=13% Similarity=0.192 Sum_probs=84.0
Q ss_pred CHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000227 1671 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1750 (1826)
Q Consensus 1671 s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf 1750 (1826)
+.+-|-.+...-||...+.-+.+.++=|.|+-..|-+..-...+..|..-|. -=|++..-++-+|- |.+...|
T Consensus 577 aie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~---iewl~ayyidtqf~----ekai~y~ 649 (840)
T KOG2003|consen 577 AIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIET---IEWLAAYYIDTQFS----EKAINYF 649 (840)
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHH---HHHHHHHHHhhHHH----HHHHHHH
Confidence 3333444444446666666666666666666666655555554443332211 12999999999998 8999999
Q ss_pred HHHHhcCCcHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHcCCCHHH
Q 000227 1751 QRALQYCDPKKVHLALLG-LYERTEQNKLADELLYKMIKKFKHSCKV 1796 (1826)
Q Consensus 1751 ~~a~~~~~~~kv~~~~~~-i~~~~~~~~~a~~~~~~~~kk~~~~~~~ 1796 (1826)
++|.-..+...-|..|+. .+.++|+|.+|.++|+..-+|||+....
T Consensus 650 ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldc 696 (840)
T KOG2003|consen 650 EKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDC 696 (840)
T ss_pred HHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHH
Confidence 999877776666766654 7899999999999999999999987554
No 276
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=95.00 E-value=0.3 Score=61.03 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 000227 1742 PEEAVVKVFQRALQ-YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSI 1808 (1826)
Q Consensus 1742 ~~e~~~~vf~~a~~-~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~ 1808 (1826)
.+..|..+.+++++ .+....+....++++.+.++++.|.++.+++++..|.+-..|...|+.|+..+
T Consensus 215 ~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 215 EEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLG 282 (395)
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcC
Confidence 44555555555553 23344455555555555555555555555555555555555555555554443
No 277
>cd05790 S1_Rrp40 S1_Rrp40: Rrp40 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=94.86 E-value=0.12 Score=50.03 Aligned_cols=71 Identities=17% Similarity=0.081 Sum_probs=57.6
Q ss_pred CCCCcEEEEEEEEEecCcEEEEeCCCeEEeecCCCcccccccCCCCCcCCCCEEEEEEEEE-eCCeEEEEecc
Q 000227 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV-KSKRITVTHKK 567 (1826)
Q Consensus 496 l~~G~iv~g~V~~v~~~G~~V~i~~~v~G~Vp~~hlsd~~l~~p~~~fkvG~~Vk~rVL~v-~~~~i~LSlK~ 567 (1826)
-++|++|=|+|+.+......|+|+....|++|..++... ..+....+++|+-|-|||..+ ....+.||+..
T Consensus 4 P~~gD~VIG~V~~~~~~~~~VdI~s~~~a~L~~~~f~ga-tk~~rp~L~~GDlV~ArV~~~~~~~~~eLtc~~ 75 (86)
T cd05790 4 PAKGDHVIGIVVAKAGDFFKVDIGGSEPASLSYLAFEGA-TKRNRPNLNVGDLVYARVVKANRDMEPELSCVD 75 (86)
T ss_pred CCCCCEEEEEEEEEcCCeEEEEcCCCcceEechHHcccc-cccccccCCCCCEEEEEEEecCCCCCeEEEEeC
Confidence 368999999999999999999999888999998776432 222334699999999999999 45678888753
No 278
>KOG2916 consensus Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=94.83 E-value=0.032 Score=62.93 Aligned_cols=91 Identities=24% Similarity=0.314 Sum_probs=76.2
Q ss_pred CCCCEEEEEEEEEeeceEEEEEC--CCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEecccccCC
Q 000227 760 HPNSVVHGYVCNIIETGCFVRFL--GRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCCSS 837 (1826)
Q Consensus 760 ~~G~~~~G~V~~i~~~GvfV~f~--~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~~~~~ 837 (1826)
.+++++.+-|.+|.+.|++|.+. |++.|++..|+||..++...+...++|-.=.|.|+.+|.+++=|-||.+...+
T Consensus 15 ev~e~VmvnV~sIaemGayv~LlEYnniEGmiLlsELSrRRIRSI~klirVGr~E~vvVlrVDkekGYIDLSkrrVs~-- 92 (304)
T KOG2916|consen 15 EVEEIVMVNVRSIAEMGAYVKLLEYNNIEGMILLSELSRRRIRSIQKLIRVGRNEPVVVLRVDKEKGYIDLSKRRVSP-- 92 (304)
T ss_pred CcccEEEEEeeEehhccceEeeeecCCcccchhhhHHHHHHHHHHHHHHhcCCcceEEEEEEcCCCCceechhccCCH--
Confidence 35899999999999999999986 89999999999999999999999999999999999999999999999887643
Q ss_pred CcchhhHHHHHHHHH
Q 000227 838 TDASFMQEHFLLEEK 852 (1826)
Q Consensus 838 ~~~~~~~~~~~~~~~ 852 (1826)
.|..-+.+-|+..+.
T Consensus 93 ed~~kC~Er~~ksK~ 107 (304)
T KOG2916|consen 93 EDKEKCEERFAKSKL 107 (304)
T ss_pred HHHHHHHHHHHHhHH
Confidence 233333444443333
No 279
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.82 E-value=0.039 Score=63.80 Aligned_cols=97 Identities=15% Similarity=0.288 Sum_probs=80.9
Q ss_pred CC-CCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHH-HcCCCCHHH
Q 000227 1668 AP-RTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLEN-EYGNPPEEA 1745 (1826)
Q Consensus 1668 ~p-~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~-~~G~~~~e~ 1745 (1826)
.| .-.-.|-|+-..-|+.-.+|.+|++|....+-+.+--+|+-.+++.-|..-+ +|+-...+|. ..+ +.++
T Consensus 88 ipqk~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvd-----lWI~~c~~e~~~~a--ni~s 160 (435)
T COG5191 88 IPQKKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVD-----LWIYCCAFELFEIA--NIES 160 (435)
T ss_pred ccceeeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCce-----eeeeeccchhhhhc--cHHH
Confidence 55 3345677888888999999999999999999899999999999987766544 8998888876 467 7799
Q ss_pred HHHHHHHHHhcC-CcHHHHHHHHHHHH
Q 000227 1746 VVKVFQRALQYC-DPKKVHLALLGLYE 1771 (1826)
Q Consensus 1746 ~~~vf~~a~~~~-~~~kv~~~~~~i~~ 1771 (1826)
+|.+|.++++.| +..++|..|..++.
T Consensus 161 ~Ra~f~~glR~N~~~p~iw~eyfr~El 187 (435)
T COG5191 161 SRAMFLKGLRMNSRSPRIWIEYFRMEL 187 (435)
T ss_pred HHHHHHhhhccCCCCchHHHHHHHHHH
Confidence 999999999887 57999999998764
No 280
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=94.81 E-value=0.04 Score=42.51 Aligned_cols=30 Identities=40% Similarity=0.742 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHH
Q 000227 1701 DVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1735 (1826)
Q Consensus 1701 ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE 1735 (1826)
++++||.+++||++..+... .+|+.|+.+|
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~-----~~W~~y~~~e 31 (33)
T smart00386 2 DIERARKIYERALEKFPKSV-----ELWLKYAEFE 31 (33)
T ss_pred cHHHHHHHHHHHHHHCCCCh-----HHHHHHHHHH
Confidence 34555555555555444222 2555555554
No 281
>PLN02789 farnesyltranstransferase
Probab=94.79 E-value=0.52 Score=57.63 Aligned_cols=135 Identities=13% Similarity=0.101 Sum_probs=106.9
Q ss_pred cCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHH
Q 000227 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMA-DVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~-ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e 1744 (1826)
..-+++...+++++..+|++..+|.........++ .+++|-..++++++.-+. ...+|.-.-.+=..+|.+..+
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-----nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-----NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-----chHHhHHHHHHHHHcCchhhH
Confidence 45778889999999999999999987766666677 589999999999864432 234787554444456621125
Q ss_pred HHHHHHHHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 000227 1745 AVVKVFQRALQY-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHF 1805 (1826)
Q Consensus 1745 ~~~~vf~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~ 1805 (1826)
.....+++|++. +....+|....-++...+++++|.+.|.++++.-+.+...|....-.+.
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT 187 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence 678889999955 5689999999999999999999999999999999999999988875443
No 282
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.69 E-value=0.64 Score=53.07 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=100.3
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHhCCCchh---HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHH
Q 000227 1657 RAAEERLLEKDAPRTPDEFERLVRSSPNSSF---VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1733 (1826)
Q Consensus 1657 ~~~~~~~~~~~~p~s~~~fer~l~~~p~ss~---lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~ 1733 (1826)
..+......++--++...|++++...|+|.. .++..+.-+.+.++.+.|+..+++-++.-|.....+..--|+++..
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 3444444566766779999999999888764 4444455566789999999999999988877665555555666666
Q ss_pred HHHHcCC------C-CHHHHHHHHHHHH-hcCCcHH----------H-------HHHHHHHHHHcCChHHHHHHHHHHHH
Q 000227 1734 LENEYGN------P-PEEAVVKVFQRAL-QYCDPKK----------V-------HLALLGLYERTEQNKLADELLYKMIK 1788 (1826)
Q Consensus 1734 lE~~~G~------~-~~e~~~~vf~~a~-~~~~~~k----------v-------~~~~~~i~~~~~~~~~a~~~~~~~~k 1788 (1826)
++..-+- . ....|...|++.+ +||++.- + -+..+.+|.+.|++..|..-|+.+++
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5543220 0 2357788899988 6776321 1 12346678899999999999999999
Q ss_pred HcCCCH---HHHHHHHHHHHhccc
Q 000227 1789 KFKHSC---KVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1789 k~~~~~---~~w~~~~~~~~~~~~ 1809 (1826)
.||.+. ..+...++.+...|.
T Consensus 170 ~yp~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 170 NYPDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred HCCCCchHHHHHHHHHHHHHHhCC
Confidence 999874 345555555555544
No 283
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=94.68 E-value=0.37 Score=55.61 Aligned_cols=132 Identities=11% Similarity=0.020 Sum_probs=102.3
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 000227 1672 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1751 (1826)
Q Consensus 1672 ~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~ 1751 (1826)
..-+=+.++.+|+.-.+ ..|..-....|+=+.+-.++..+. |-.....+ +-.+|.+.-...| +.+.|...|.
T Consensus 53 ~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~--~~~~~d~~---ll~~~gk~~~~~g--~~~~A~~~~r 124 (257)
T COG5010 53 AAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSA--IAYPKDRE---LLAAQGKNQIRNG--NFGEAVSVLR 124 (257)
T ss_pred HHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhh--ccCcccHH---HHHHHHHHHHHhc--chHHHHHHHH
Confidence 34455666778887777 778877777776666666666643 22222222 3444888888899 7799999999
Q ss_pred HHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccc
Q 000227 1752 RALQY-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILSI 1811 (1826)
Q Consensus 1752 ~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~~ 1811 (1826)
+|.+- ++.++.|+-++-+|.+.|+++.||.-|.++++.++.++.+--+.+-.|+-+|+..
T Consensus 125 kA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~ 185 (257)
T COG5010 125 KAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLE 185 (257)
T ss_pred HHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHH
Confidence 99965 5789999999999999999999999999999999999999999999988887654
No 284
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=94.66 E-value=0.25 Score=61.59 Aligned_cols=110 Identities=14% Similarity=0.052 Sum_probs=90.0
Q ss_pred CCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000227 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1826)
Q Consensus 1667 ~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~ 1746 (1826)
+.-++.+-|+++...+|+ .|+..++..+..++-.+|-+++.+|++..+.. ..++....++-..-| .++-|
T Consensus 184 ~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d-----~~LL~~Qa~fLl~k~--~~~lA 253 (395)
T PF09295_consen 184 RYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQD-----SELLNLQAEFLLSKK--KYELA 253 (395)
T ss_pred cHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcC--CHHHH
Confidence 344567899999999886 45556777778888899999999999655433 347777888888889 78999
Q ss_pred HHHHHHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000227 1747 VKVFQRALQY-CDPKKVHLALLGLYERTEQNKLADELLYKM 1786 (1826)
Q Consensus 1747 ~~vf~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~ 1786 (1826)
..+.++|++. ++..+.|..++++|.+.|++++|.-..+.+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999965 668999999999999999999999766644
No 285
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=94.66 E-value=0.15 Score=49.18 Aligned_cols=83 Identities=16% Similarity=0.093 Sum_probs=61.5
Q ss_pred hcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHcCCh
Q 000227 1698 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQN 1776 (1826)
Q Consensus 1698 ~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~-~~~kv~~~~~~i~~~~~~~ 1776 (1826)
++++++.|-.+++++++.-+... .-.+|..+...-...| .+++|..++++ .+.. .....+..+++.+.+.|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~---~~~~~~~la~~~~~~~--~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNP---NSAYLYNLAQCYFQQG--KYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTH---HHHHHHHHHHHHHHTT--HHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-H
T ss_pred CCccHHHHHHHHHHHHHHCCCCh---hHHHHHHHHHHHHHCC--CHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCH
Confidence 35788999999999988766421 2236776666666788 77999999988 5444 3557777779999999999
Q ss_pred HHHHHHHHHH
Q 000227 1777 KLADELLYKM 1786 (1826)
Q Consensus 1777 ~~a~~~~~~~ 1786 (1826)
++|+++|+++
T Consensus 75 ~eAi~~l~~~ 84 (84)
T PF12895_consen 75 EEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 9999999874
No 286
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.66 E-value=0.58 Score=51.53 Aligned_cols=119 Identities=11% Similarity=0.047 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHhCC--CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000227 1669 PRTPDEFERLVRSSP--NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1826)
Q Consensus 1669 p~s~~~fer~l~~~p--~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~ 1746 (1826)
++-.+.+.+.+..++ +....|...+.....+++++.|-..+++|+...+.. ...-.+|..+-.+-...| ..+.|
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--~~~~~~~~~lg~~~~~~g--~~~eA 91 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP--YDRSYILYNIGLIHTSNG--EHTKA 91 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc--hhhHHHHHHHHHHHHHcC--CHHHH
Confidence 333444444433333 347899999999999999999999999998754322 122347888888888899 78999
Q ss_pred HHHHHHHHhcC-CcHHHHHHHHHHHH-------HcCChHH-------HHHHHHHHHHHcC
Q 000227 1747 VKVFQRALQYC-DPKKVHLALLGLYE-------RTEQNKL-------ADELLYKMIKKFK 1791 (1826)
Q Consensus 1747 ~~vf~~a~~~~-~~~kv~~~~~~i~~-------~~~~~~~-------a~~~~~~~~kk~~ 1791 (1826)
...|++|++.+ .....|..++.+|. ..|+++. |.++|++++...|
T Consensus 92 ~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 92 LEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999654 45666777888877 7778774 4555555555555
No 287
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.62 E-value=0.037 Score=43.90 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=31.6
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHH
Q 000227 1675 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARS 1707 (1826)
Q Consensus 1675 fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~ 1707 (1826)
|+|+|+.+|+++..|..++.+..++|+.++||+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999974
No 288
>TIGR02062 RNase_B exoribonuclease II. This family consists of exoribonuclease II, the product of the rnb gene, as found in a number of gamma proteobacteria. In Escherichia coli, it is one of eight different exoribonucleases. It is involved in mRNA degradation and tRNA precursor end processing.
Probab=94.59 E-value=0.083 Score=70.25 Aligned_cols=67 Identities=15% Similarity=0.161 Sum_probs=55.5
Q ss_pred CCEEEEEEEEEecceEEEEe-CCCeEEEEEccccCC---Ccc--CCC-------CccCCCCcEEEEEEEEEeCCCCeEEE
Q 000227 1379 NMIVQGYVKNVTSKGCFIML-SRKLDAKVLLSNLSD---GYV--ESP-------EKEFPIGKLVAGRVLSVEPLSKRVEV 1445 (1826)
Q Consensus 1379 G~~v~G~V~~v~~~GvFV~l-~~~v~g~v~iselsd---~~v--~~~-------~~~f~vGq~V~~kVl~vd~e~~rI~l 1445 (1826)
|+.+.|.|..++++|+||+| ..+++|+||++.|.+ .|. .+. +..|+.||.|+++|.++|.++++|.+
T Consensus 558 ~~~f~g~I~~v~~~g~~v~l~~~~~~g~v~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~lgd~v~V~v~~vd~~~~~i~~ 637 (639)
T TIGR02062 558 NTRFAAEIVDISRGGMRVRLLENGAIAFIPAAFLHANREELVCNQENGTVQIKGETVYKIGDVIDVVLTEVRMETRSIIA 637 (639)
T ss_pred CcEEEEEEEeeeCCcEEEEEecCceEEEEEhhhcCCCCcceEEcccccEEEEeccEEEecCCEEEEEEEEeccccCcEee
Confidence 45899999999999999999 567999999999976 232 211 12699999999999999999988875
No 289
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=94.44 E-value=0.039 Score=42.63 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 000227 1742 PEEAVVKVFQRALQYCDPKKVHLALLGLYE 1771 (1826)
Q Consensus 1742 ~~e~~~~vf~~a~~~~~~~kv~~~~~~i~~ 1771 (1826)
+.|+|+.||+|.+...+..+.|++||++++
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHhhc
Confidence 358999999999999999999999999874
No 290
>COG0557 VacB Exoribonuclease R [Transcription]
Probab=94.38 E-value=0.093 Score=70.89 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=63.0
Q ss_pred cccCCCCCEEEEEEEEEeeceEEEEECCC-eEEEEeCCCcCcccc-----------cCcccCCCCCCEEEEEEEEeeCCC
Q 000227 756 ASHIHPNSVVHGYVCNIIETGCFVRFLGR-LTGFAPRSKAVDGQR-----------ADLSKTYYVGQSVRSNILDVNSET 823 (1826)
Q Consensus 756 ~~~~~~G~~~~G~V~~i~~~GvfV~f~~g-l~Glv~~s~l~~~~~-----------~~~~~~f~vGq~V~~~V~~id~e~ 823 (1826)
|-.-++|..+.|+|++++.+|+||++++- +.|++|.+.+.+.+. +.....|..||.|+++|.+++...
T Consensus 617 ~m~~~vg~~f~g~V~~v~~~g~~V~l~~~~ieglV~~s~L~~d~y~~~~~~~~l~~~~~~~~~~lgd~v~v~v~~v~~~~ 696 (706)
T COG0557 617 YMKKRVGEEFDGVVTGVTSFGFFVELPELGLEGLVHISSLPDDYYHFDERGQALVGEKSGKVYRLGDEVKVKVTSVDLDE 696 (706)
T ss_pred HHHHhcCCEEEEEEEEEEeccEEEEecccccccceEcccCCCceeeeccccceeeccccccccccCCEEEEEEEEEcccc
Confidence 33346899999999999999999999875 999999999985322 122336999999999999999999
Q ss_pred CeEEEEec
Q 000227 824 GRITLSLK 831 (1826)
Q Consensus 824 ~rl~LSlk 831 (1826)
+++.+++-
T Consensus 697 ~~i~~~~v 704 (706)
T COG0557 697 RKIDFELV 704 (706)
T ss_pred cceEEEec
Confidence 99988753
No 291
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.38 E-value=0.22 Score=60.37 Aligned_cols=114 Identities=14% Similarity=0.233 Sum_probs=60.9
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHhc-CCcHH
Q 000227 1684 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE-YGNPPEEAVVKVFQRALQY-CDPKK 1761 (1826)
Q Consensus 1684 ~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~-~G~~~~e~~~~vf~~a~~~-~~~~k 1761 (1826)
.-+..|--||.+.++...++.||+|+-.+-+. ++ -.-.|+++.+-||.. .| +..+|-.+|+-.+.+ +|..-
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~----~~h~vyi~~A~~E~~~~~--d~~ta~~ifelGl~~f~d~~~ 467 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKE-GI----VGHHVYIYCAFIEYYATG--DRATAYNIFELGLLKFPDSTL 467 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CC----CCcceeeeHHHHHHHhcC--CcchHHHHHHHHHHhCCCchH
Confidence 34678888888888888888888888888321 10 001144444444432 23 445555555555533 33333
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC--HHHHHHHHHHH
Q 000227 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHS--CKVIIELLSFH 1804 (1826)
Q Consensus 1762 v~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~--~~~w~~~~~~~ 1804 (1826)
.-.+|..+++.-++-+.||.+|++++.+.... ..+|-.+..++
T Consensus 468 y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YE 512 (660)
T COG5107 468 YKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYE 512 (660)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHH
Confidence 33445555555555555555555555444222 34444444443
No 292
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=94.30 E-value=0.28 Score=66.50 Aligned_cols=135 Identities=18% Similarity=0.201 Sum_probs=99.3
Q ss_pred cCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cccchhhhHHHHHHHHHHHHHHcCCCCHH
Q 000227 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~-i~~re~~e~~niW~a~l~lE~~~G~~~~e 1744 (1826)
+...++.+.|||+|..+|++..+ +++.+|.+...++++|++.+.+|+.+ |+.++-.+-+.+|-.|+..+-.-+ +
T Consensus 130 g~~~ka~~~yer~L~~D~~n~~a-LNn~AY~~ae~dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~----d 204 (906)
T PRK14720 130 NENKKLKGVWERLVKADRDNPEI-VKKLATSYEEEDKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDF----D 204 (906)
T ss_pred CChHHHHHHHHHHHhcCcccHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccc----h
Confidence 55788899999999999999998 66666666555999999999999875 455554455578999997766555 4
Q ss_pred HHHHHHHHHHhcCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 000227 1745 AVVKVFQRALQYCDP---KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHF 1805 (1826)
Q Consensus 1745 ~~~~vf~~a~~~~~~---~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~ 1805 (1826)
-+-.+.++....... ..+|.-+-..|...++|+.+.++++.+++-.+.+.+.-...+.+|-
T Consensus 205 ~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 205 FFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 455555554433333 3344445555677888999999999999999887777666777654
No 293
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.21 E-value=0.34 Score=50.32 Aligned_cols=81 Identities=16% Similarity=0.171 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC----CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC---CHHHHHH
Q 000227 1727 IWVAYFNLENEYGNPPEEAVVKVFQRALQYC----DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH---SCKVIIE 1799 (1826)
Q Consensus 1727 iW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~----~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~---~~~~w~~ 1799 (1826)
+|+.....-...| .++.|..+|++|+..- +....++.++..|...|++++|..+++.++..||. +..++.-
T Consensus 3 ~~~~~A~a~d~~G--~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f 80 (120)
T PF12688_consen 3 ALYELAWAHDSLG--REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF 80 (120)
T ss_pred hHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence 5666667778899 8899999999999753 24678999999999999999999999999999998 7888888
Q ss_pred HHHHHHhccc
Q 000227 1800 LLSFHFTSIL 1809 (1826)
Q Consensus 1800 ~~~~~~~~~~ 1809 (1826)
++..+...|.
T Consensus 81 ~Al~L~~~gr 90 (120)
T PF12688_consen 81 LALALYNLGR 90 (120)
T ss_pred HHHHHHHCCC
Confidence 8887777654
No 294
>PRK12329 nusA transcription elongation factor NusA; Provisional
Probab=94.16 E-value=0.15 Score=62.95 Aligned_cols=107 Identities=13% Similarity=0.239 Sum_probs=74.4
Q ss_pred CcCCCCEEEEEEEEE--e-CCeEEEEecchhhcc----ch-hhccccccccCCcEEEEEEEEEecceEEEEEc---C--C
Q 000227 542 KFKVGAELVFRVLGV--K-SKRITVTHKKTLVKS----KL-AILSSYAEATDRLITHGWITKIEKHGCFVRFY---N--G 608 (1826)
Q Consensus 542 ~fkvG~~Vk~rVL~v--~-~~~i~LSlK~~Lv~~----~~-~~~~s~~~~~~G~~~~G~V~~i~~~G~~V~~~---~--g 608 (1826)
.+++|+.|...|--. + .+...-|.|+.+... .. -+...|.+ ..|.++.|+|.++...+++|.+. | +
T Consensus 102 ~~~iGD~v~~~v~~~~~~fgRiAAq~aKQvi~Qkire~ER~~i~~ef~~-~~GeIV~G~V~r~e~~~viv~l~~~~g~~~ 180 (449)
T PRK12329 102 EAQLGDTVVLDVTPEQEDFGRMAAIQTKQVLAQKLRDQQRKMIQEEFQD-LEDTVLTARVLRFERQSVIMAVSSGFGQPE 180 (449)
T ss_pred CCcCCCEEEEecCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcEEEEEEEEEcCCCEEEEecccCCCcc
Confidence 588999998765311 1 122233344433321 11 12233432 58999999999999999999983 4 3
Q ss_pred eEEEEeCcccCCCCCCCCCCCccCCCEEEEEEEEEccCC---CEEEEEEe
Q 000227 609 VQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPAS---RRINLSFM 655 (1826)
Q Consensus 609 v~G~vp~sel~~~~~~~~~~~~~vGq~V~vrVl~vd~~~---~ri~lS~k 655 (1826)
+.|++|.++. -|.+.|++|+.++|.|.+|.... -.|.||..
T Consensus 181 ~EaiLP~~Eq------ip~E~y~~Gdrika~i~~V~~~~~kGpqIilSRt 224 (449)
T PRK12329 181 VEAELPKREQ------LPNDNYRANATFKVFLKEVSEGPRRGPQLFVSRA 224 (449)
T ss_pred eEEEecHHHc------CCCCcCCCCCEEEEEEEEeecCCCCCCEEEEEcC
Confidence 9999999998 45678999999999999997653 46888864
No 295
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=94.01 E-value=0.16 Score=67.13 Aligned_cols=139 Identities=10% Similarity=0.090 Sum_probs=82.8
Q ss_pred cCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchh-hhH---HHHHHHHHHHHHHcCCC
Q 000227 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREE-NEK---LNIWVAYFNLENEYGNP 1741 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~-~e~---~niW~a~l~lE~~~G~~ 1741 (1826)
.+.+++...+-.++..+-.+-..|--|-.+|+...+.-.|.+-.++.++....... ..- =|+|++-+.-....++.
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 56888999999999999999999998999999999999999988888775432211 111 17888877655544310
Q ss_pred ---CHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 000227 1742 ---PEEAVVKVFQRALQYCDPKKVHLALL--GLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHF 1805 (1826)
Q Consensus 1742 ---~~e~~~~vf~~a~~~~~~~kv~~~~~--~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~ 1805 (1826)
-.+.|.++|+.+++ ++|+.+|-.-. -++...|++..|+.+|.+--.-..+...+|++.|.+|+
T Consensus 624 ~kk~~~KAlq~y~kvL~-~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLR-NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred HHHHHHHHHHHHHHHHh-cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 23455555555553 23333433221 13334444444444444444333334444444444443
No 296
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=93.87 E-value=0.13 Score=65.95 Aligned_cols=137 Identities=13% Similarity=0.135 Sum_probs=105.7
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHH-HHHHHHHHHHHHcCCCCH
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-NIWVAYFNLENEYGNPPE 1743 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~-niW~a~l~lE~~~G~~~~ 1743 (1826)
+++.-++-.+||+.++.||-.-..|..|-..-||+.+...|-+-+.|+...-|.+ .|.| |+=.||+. .| ..
T Consensus 498 ~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~--~eaWnNls~ayi~----~~--~k 569 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN--AEAWNNLSTAYIR----LK--KK 569 (777)
T ss_pred chhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc--hhhhhhhhHHHHH----Hh--hh
Confidence 4567777889999999999999999999999999999999999999998766655 3444 34455554 46 55
Q ss_pred HHHHHHHHHHHhcC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHhccc
Q 000227 1744 EAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIK--KFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1744 e~~~~vf~~a~~~~-~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~k--k~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
.++...+++|+.++ +++++|..|.-.-.+-|.++.|.+.|.+++. +......+=...+.-..+..+
T Consensus 570 ~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~~~~ 638 (777)
T KOG1128|consen 570 KRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLEGMT 638 (777)
T ss_pred HHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHhhcc
Confidence 78899999999776 7899999999999999999999999999874 222255555555555554444
No 297
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=93.86 E-value=0.56 Score=56.54 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=99.1
Q ss_pred HHHHHHHHHhCCCc--hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 000227 1672 PDEFERLVRSSPNS--SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKV 1749 (1826)
Q Consensus 1672 ~~~fer~l~~~p~s--s~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~v 1749 (1826)
..+|+.+|...-+. -.+-...+...|+.+.++-|++.++++.++ .++.--.+++-||++|=.--. ....|.-+
T Consensus 115 ~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD~~l~qLa~awv~l~~g~e--~~~~A~y~ 189 (290)
T PF04733_consen 115 EGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQI---DEDSILTQLAEAWVNLATGGE--KYQDAFYI 189 (290)
T ss_dssp CCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCCHHHHHHHHHHHHHHHTTT--CCCHHHHH
T ss_pred cCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHhCch--hHHHHHHH
Confidence 35677777555443 333344567778899999999999998543 333345588889988854444 45889999
Q ss_pred HHHHHh-cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 000227 1750 FQRALQ-YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILS 1810 (1826)
Q Consensus 1750 f~~a~~-~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~ 1810 (1826)
|++..+ +.+...+...++-.+...|+|++|.++++.++.+.|+.+.+++..+-+..-.|..
T Consensus 190 f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 190 FEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 999884 5678899999999999999999999999999999999999999988886666654
No 298
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.85 E-value=0.6 Score=56.88 Aligned_cols=125 Identities=15% Similarity=0.183 Sum_probs=97.1
Q ss_pred HHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000227 1674 EFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1753 (1826)
Q Consensus 1674 ~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a 1753 (1826)
.+..-+.-||++-.-|.+.+++.=..+-.++-|++.+.-...-|+-+. +|.-|+.=|..+. +.++++.+|-|.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~-----aw~ly~s~ELA~~--df~svE~lf~rC 102 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEH-----AWRLYMSGELARK--DFRSVESLFGRC 102 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccH-----HHHHHhcchhhhh--hHHHHHHHHHHH
Confidence 344445778999999999999998999999999999999888777654 8999999999999 889999999999
Q ss_pred HhcCCcHHHHHHHHHHHHHcCCh------HHHHHHHHHHHH--Hc-CCCHHHHHHHHHHHH
Q 000227 1754 LQYCDPKKVHLALLGLYERTEQN------KLADELLYKMIK--KF-KHSCKVIIELLSFHF 1805 (1826)
Q Consensus 1754 ~~~~~~~kv~~~~~~i~~~~~~~------~~a~~~~~~~~k--k~-~~~~~~w~~~~~~~~ 1805 (1826)
+.--=...+|+.|+..-.+-+.. -..-+.|+-.+. -| |++...|-.|+.|+.
T Consensus 103 L~k~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle 163 (660)
T COG5107 103 LKKSLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLE 163 (660)
T ss_pred HhhhccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 96555578888888865554321 122333443333 23 889999999999964
No 299
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.70 E-value=0.12 Score=50.00 Aligned_cols=69 Identities=19% Similarity=0.090 Sum_probs=56.9
Q ss_pred cCCCCHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1738 YGNPPEEAVVKVFQRALQYCD---PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1738 ~G~~~~e~~~~vf~~a~~~~~---~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
.| +.+.|..+|+++++..+ ....|+.++..|.+.|++++|.+++++ .+.-+.+...+..+|+.++..+.
T Consensus 2 ~~--~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QG--NYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp TT---HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred Cc--cHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence 46 77999999999996655 456788899999999999999999999 55556667888888999988764
No 300
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=93.69 E-value=0.34 Score=66.10 Aligned_cols=116 Identities=16% Similarity=0.080 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-c--CCcHHH
Q 000227 1687 FVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ-Y--CDPKKV 1762 (1826)
Q Consensus 1687 ~lWi~y~~f~l~~~ei~kAR~i~erAl~~-i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~-~--~~~~kv 1762 (1826)
..|-..+.-+.+.|+.++|.+++++.++. +... ...|.++|+--..-| ..+.+.++|+.+.+ + .+....
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-----~~T~~~ll~a~~~~g--~~~~a~~~f~~m~~~~g~~p~~~~ 464 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN-----HVTFLAVLSACRYSG--LSEQGWEIFQSMSENHRIKPRAMH 464 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-----HHHHHHHHHHHhcCC--cHHHHHHHHHHHHHhcCCCCCccc
Confidence 34555555555555555555555554321 1111 123555555555555 55666666666553 2 233445
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccc
Q 000227 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILSI 1811 (1826)
Q Consensus 1763 ~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~~ 1811 (1826)
|..+++.|.+.|++++|.+++++| .+..+..+|-..+..+-.+++-.
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~~--~~~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRRA--PFKPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCcH
Confidence 666666666666666666666554 23334666777777766666544
No 301
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=93.63 E-value=0.32 Score=62.35 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=90.9
Q ss_pred cCCCCCHHHHHHHHH--------hCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc---chhhhHHHHHHHHHHH
Q 000227 1666 KDAPRTPDEFERLVR--------SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI---REENEKLNIWVAYFNL 1734 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~--------~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~---re~~e~~niW~a~l~l 1734 (1826)
...-+++.-|+++|. -+|.....-++-+......|.++.|+..++||++...- -...+--........+
T Consensus 255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 457788999999984 45777778888788889999999999999999874321 0001101223333344
Q ss_pred HHHcCCCCHHHHHHHHHHHH-hcC--------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc
Q 000227 1735 ENEYGNPPEEAVVKVFQRAL-QYC--------DPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1790 (1826)
Q Consensus 1735 E~~~G~~~~e~~~~vf~~a~-~~~--------~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~ 1790 (1826)
...-+ ..|.+..++++|+ ++. .-.++|..|+..|..+|++++|+++|++++.+.
T Consensus 335 ~~~~~--~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 335 LQSMN--EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHhc--chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 44556 5688999999998 322 236789999999999999999999999999877
No 302
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.63 E-value=0.29 Score=45.05 Aligned_cols=63 Identities=17% Similarity=0.142 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHcC
Q 000227 1727 IWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTE-QNKLADELLYKMIKKFK 1791 (1826)
Q Consensus 1727 iW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~-~~~kv~~~~~~i~~~~~-~~~~a~~~~~~~~kk~~ 1791 (1826)
+|..+-..=...| +.+.|...|++|++++ +...+|..++.+|.+.| ++++|.+.|+++++..|
T Consensus 5 ~~~~~g~~~~~~~--~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 5 AWYNLGQIYFQQG--DYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 6777777777788 7799999999999765 47888999999999998 69999999999988654
No 303
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=1.3 Score=54.62 Aligned_cols=137 Identities=20% Similarity=0.163 Sum_probs=88.4
Q ss_pred CHHHHHHHHHh-CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHH--HH--------HHHHHHHHHH--
Q 000227 1671 TPDEFERLVRS-SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL--NI--------WVAYFNLENE-- 1737 (1826)
Q Consensus 1671 s~~~fer~l~~-~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~--ni--------W~a~l~lE~~-- 1737 (1826)
+...+++++.. -|+|..+=-+-++-...+.++|+|-.++|.-.+.-|+|-+.--+ |+ =++||.-+..
T Consensus 246 ~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i 325 (559)
T KOG1155|consen 246 ALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI 325 (559)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh
Confidence 35677777765 78888887777777778888888888888888887777543222 21 1122211110
Q ss_pred --c--------CCC-----CHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHH
Q 000227 1738 --Y--------GNP-----PEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELL 1801 (1826)
Q Consensus 1738 --~--------G~~-----~~e~~~~vf~~a~~~~~-~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~ 1801 (1826)
| ||+ +.|.|-..|+||++.|+ .--+|..+..=|.+..+...|.+-|.++++-+|..-.-|.-.+
T Consensus 326 dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLG 405 (559)
T KOG1155|consen 326 DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLG 405 (559)
T ss_pred ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhh
Confidence 1 210 35777778888887665 3456777777777777777777777777777776666776666
Q ss_pred HHHHhc
Q 000227 1802 SFHFTS 1807 (1826)
Q Consensus 1802 ~~~~~~ 1807 (1826)
+.|.-.
T Consensus 406 QaYeim 411 (559)
T KOG1155|consen 406 QAYEIM 411 (559)
T ss_pred HHHHHh
Confidence 665433
No 304
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=1.3 Score=52.34 Aligned_cols=122 Identities=11% Similarity=0.011 Sum_probs=94.8
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH
Q 000227 1675 FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENE-YGNPPEEAVVKVFQRA 1753 (1826)
Q Consensus 1675 fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~-~G~~~~e~~~~vf~~a 1753 (1826)
.|.-|..||++..=|+.-....+++++..-|-.-+.+|++.-+. +-.+|..|..-=.. -|......++.+|++|
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-----n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-----NPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 45566889999999999999999999999999999999865543 44589988854332 2322457899999999
Q ss_pred Hhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 000227 1754 LQY-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLS 1802 (1826)
Q Consensus 1754 ~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~ 1802 (1826)
+.. +...+.-.-++..+.+.|+|.+|...+++|++.-|. ..-|....+
T Consensus 220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~-~~~rr~~ie 268 (287)
T COG4235 220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA-DDPRRSLIE 268 (287)
T ss_pred HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-CCchHHHHH
Confidence 944 556666666777889999999999999999999975 344554444
No 305
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.13 E-value=0.21 Score=45.92 Aligned_cols=50 Identities=14% Similarity=-0.022 Sum_probs=47.2
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 000227 1759 PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSI 1808 (1826)
Q Consensus 1759 ~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~ 1808 (1826)
...+|..++.++.+.+++++|.+.|+++++..|.++.+|...+..++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~ 51 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG 51 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence 35689999999999999999999999999999999999999999999887
No 306
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.07 E-value=0.83 Score=53.77 Aligned_cols=93 Identities=22% Similarity=0.272 Sum_probs=56.3
Q ss_pred cCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHc---CCCC
Q 000227 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY---GNPP 1742 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~---G~~~ 1742 (1826)
.+--++++-|.+||..+|++..++=+.++=+.++++.+.|-+=+++||. |+. +-|.||..|=..| | .
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~-iDp-------~yskay~RLG~A~~~~g--k 164 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS-IDP-------HYSKAYGRLGLAYLALG--K 164 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh-cCh-------HHHHHHHHHHHHHHccC--c
Confidence 3455679999999999999999988777777777777777666666653 221 1344444443322 3 3
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHH
Q 000227 1743 EEAVVKVFQRALQYCDPKKVHLALLG 1768 (1826)
Q Consensus 1743 ~e~~~~vf~~a~~~~~~~kv~~~~~~ 1768 (1826)
.+.|..-|++|+..-+....|..-++
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 34444445555544444444443333
No 307
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.07 E-value=0.51 Score=59.55 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=42.8
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT 1715 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~ 1715 (1826)
+++.|+++--||.++..+|..-..|...--=|-++.+=..|-.-++||++.
T Consensus 298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L 348 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL 348 (579)
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc
Confidence 577899999999999999999999988877777777777888888888664
No 308
>PRK12329 nusA transcription elongation factor NusA; Provisional
Probab=93.01 E-value=0.29 Score=60.70 Aligned_cols=70 Identities=20% Similarity=0.326 Sum_probs=58.4
Q ss_pred CCcEEEEEEEEEeeceEEEEe----CCCCeEEEeeCCCCCcCCCCCCCCCcEEEEEEEEEcCC---CCEEEEecCcccc
Q 000227 232 EGMVLTAYVKSIEDHGYILHF----GLPSFTGFLPRNNLAENSGIDVKPGLLLQGVVRSIDRT---RKVVYLSSDPDTV 303 (1826)
Q Consensus 232 ~G~~l~~~V~svEDhG~ild~----Gi~~~~gFl~~~~~~~~~~~~l~~G~~~~~~V~~~~~~---~~~v~ls~~~~~~ 303 (1826)
.|.+++|.|..++.++++||+ |-.++.|+||+++.-+.. .|++|+.+.|.|..+... |-.+.||.....+
T Consensus 152 ~GeIV~G~V~r~e~~~viv~l~~~~g~~~~EaiLP~~Eqip~E--~y~~Gdrika~i~~V~~~~~kGpqIilSRt~p~l 228 (449)
T PRK12329 152 EDTVLTARVLRFERQSVIMAVSSGFGQPEVEAELPKREQLPND--NYRANATFKVFLKEVSEGPRRGPQLFVSRANAGL 228 (449)
T ss_pred cCcEEEEEEEEEcCCCEEEEecccCCCcceEEEecHHHcCCCC--cCCCCCEEEEEEEEeecCCCCCCEEEEEcCCHHH
Confidence 699999999999999999998 433589999999966566 999999999999999553 5678888755444
No 309
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.92 E-value=0.19 Score=42.25 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHH
Q 000227 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1733 (1826)
Q Consensus 1687 ~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~ 1733 (1826)
..|+.|+..++++|+.++|+.+++|+++.-|.+- .+|..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~-----~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP-----EAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH-----HHHHHhhh
Confidence 4799999999999999999999999998766543 48888764
No 310
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=92.29 E-value=0.85 Score=62.23 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=55.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-cHHHHHHHH
Q 000227 1689 WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-PKKVHLALL 1767 (1826)
Q Consensus 1689 Wi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~-~~kv~~~~~ 1767 (1826)
|-..+...-+.|.+++|.++++++ ++. ....+|.++|+.=...| +.+.++.+++++++..+ ....|..++
T Consensus 465 y~~li~~l~r~G~~~eA~~~~~~~----~~~---p~~~~~~~Ll~a~~~~g--~~~~a~~~~~~l~~~~p~~~~~y~~L~ 535 (697)
T PLN03081 465 YACMIELLGREGLLDEAYAMIRRA----PFK---PTVNMWAALLTACRIHK--NLELGRLAAEKLYGMGPEKLNNYVVLL 535 (697)
T ss_pred hHhHHHHHHhcCCHHHHHHHHHHC----CCC---CCHHHHHHHHHHHHHcC--CcHHHHHHHHHHhCCCCCCCcchHHHH
Confidence 444455555566666666665543 111 12246777777766777 55777777777665443 345677777
Q ss_pred HHHHHcCChHHHHHHHHHHHHH
Q 000227 1768 GLYERTEQNKLADELLYKMIKK 1789 (1826)
Q Consensus 1768 ~i~~~~~~~~~a~~~~~~~~kk 1789 (1826)
.+|.+.|++++|.++++.|-++
T Consensus 536 ~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 536 NLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHc
Confidence 7777777777777777776543
No 311
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=92.21 E-value=0.16 Score=46.20 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=46.8
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN 1717 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~ 1717 (1826)
.++..++...|++++..+|++...|..+...+++.++.++|+..+++|++.-|
T Consensus 10 ~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45566778999999999999999999999999999999999999999986544
No 312
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=92.20 E-value=0.78 Score=47.91 Aligned_cols=98 Identities=21% Similarity=0.339 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHH-HHHcCCC-CHHHHHHHHHHHHhc--------CCc--HHHHHHHHHHHH
Q 000227 1704 KARSIAERALQTINIREENEKLNIWVAYFNL-ENEYGNP-PEEAVVKVFQRALQY--------CDP--KKVHLALLGLYE 1771 (1826)
Q Consensus 1704 kAR~i~erAl~~i~~re~~e~~niW~a~l~l-E~~~G~~-~~e~~~~vf~~a~~~--------~~~--~kv~~~~~~i~~ 1771 (1826)
.-|+-+|.++.. ..+....|.+|..|++- |..|..- ....+..+++|+++. ||+ -++|++|+...
T Consensus 3 ~~r~~~e~~i~~--~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~- 79 (125)
T smart00777 3 QQRQAFEQELQD--LYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC- 79 (125)
T ss_pred HHHHHHHHHHHh--cccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc-
Confidence 346777777642 34566789999999985 4456310 345677788888853 232 58899999753
Q ss_pred HcCChHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhccc
Q 000227 1772 RTEQNKLADELLYKMIKKF--KHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1772 ~~~~~~~a~~~~~~~~kk~--~~~~~~w~~~~~~~~~~~~ 1809 (1826)
+.++++|.-|..+= .+..-.|+.||.++..+|+
T Consensus 80 -----~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~ 114 (125)
T smart00777 80 -----DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGR 114 (125)
T ss_pred -----CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCC
Confidence 45799999998765 5568999999999988875
No 313
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.12 E-value=1.9 Score=54.57 Aligned_cols=47 Identities=9% Similarity=-0.130 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1763 HLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1763 ~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
|..++.+|.+.++++.|...|++++...|+++......|-.+...||
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn 504 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN 504 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC
Confidence 66677788999999999999999999999999998888877766654
No 314
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=92.09 E-value=1.2 Score=60.73 Aligned_cols=133 Identities=16% Similarity=0.169 Sum_probs=87.7
Q ss_pred CCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHH--H------------HHHHH
Q 000227 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI--W------------VAYFN 1733 (1826)
Q Consensus 1668 ~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~ni--W------------~a~l~ 1733 (1826)
..+..+..++++..+|++-.+|...+-.+++.++.+.|-.+ +++..++... +|++ | .|+..
T Consensus 47 ~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~---~~~~ve~~~~~i~~~~~~k~Al~~ 121 (906)
T PRK14720 47 TDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL---KWAIVEHICDKILLYGENKLALRT 121 (906)
T ss_pred HHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc---chhHHHHHHHHHHhhhhhhHHHHH
Confidence 44445566666777777777776666666677777666666 6666554332 1111 1 35555
Q ss_pred HHHHc---CCCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc------CCCHHHHHHHHHH
Q 000227 1734 LENEY---GNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKF------KHSCKVIIELLSF 1803 (1826)
Q Consensus 1734 lE~~~---G~~~~e~~~~vf~~a~~~~~-~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~------~~~~~~w~~~~~~ 1803 (1826)
|=..| | ..+.+..+|+|++++.+ ...+-..||-+|... ++++|+++|.++++.| ..--.+|-.|+..
T Consensus 122 LA~~Ydk~g--~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 122 LAEAYAKLN--ENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHcC--ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhc
Confidence 55555 7 66889999999997764 566777777778777 9999999999998776 2225567777665
Q ss_pred HHhcc
Q 000227 1804 HFTSI 1808 (1826)
Q Consensus 1804 ~~~~~ 1808 (1826)
-...+
T Consensus 199 ~~~d~ 203 (906)
T PRK14720 199 NSDDF 203 (906)
T ss_pred Ccccc
Confidence 44433
No 315
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.06 E-value=0.29 Score=45.58 Aligned_cols=55 Identities=20% Similarity=0.321 Sum_probs=49.2
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccc
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIR 1719 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~r 1719 (1826)
..+...+...++|++..+|++..+|..++.++.++|+++.|++.++++++.-|.+
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 3456677899999999999999999999999999999999999999999766643
No 316
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.00 E-value=0.66 Score=43.11 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=52.5
Q ss_pred HcCCCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHH
Q 000227 1737 EYGNPPEEAVVKVFQRALQY-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVII 1798 (1826)
Q Consensus 1737 ~~G~~~~e~~~~vf~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~ 1798 (1826)
..+ +.+.+.++++++++. ++....|..++.+|.+.|+++.|.+.|+++++..|.....=.
T Consensus 7 ~~~--~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 7 QQE--DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred hCC--CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 356 779999999999965 678999999999999999999999999999999997765543
No 317
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=91.99 E-value=1.2 Score=52.22 Aligned_cols=105 Identities=9% Similarity=-0.052 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-cCCcH---H
Q 000227 1686 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ-YCDPK---K 1761 (1826)
Q Consensus 1686 s~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~-~~~~~---k 1761 (1826)
..-|-.-+.-.++.++.++|.+.++..+..-|.....+....|++++.+. .| +.+.|...|++.++ +|++. .
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~--~~--~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK--NA--DLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh--cC--CHHHHHHHHHHHHHhCcCCCchHH
Confidence 33444556666778999999999999998888877766777899988775 57 77999999999994 45432 2
Q ss_pred HHHHHHHHHHHc------------------CChHHHHHHHHHHHHHcCCCH
Q 000227 1762 VHLALLGLYERT------------------EQNKLADELLYKMIKKFKHSC 1794 (1826)
Q Consensus 1762 v~~~~~~i~~~~------------------~~~~~a~~~~~~~~kk~~~~~ 1794 (1826)
++.+.+..+... ....+|.+.|++.+++||+|.
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 333333322111 113467799999999999874
No 318
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.78 E-value=0.92 Score=58.22 Aligned_cols=45 Identities=9% Similarity=-0.175 Sum_probs=20.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccc
Q 000227 1767 LGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILSI 1811 (1826)
Q Consensus 1767 ~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~~ 1811 (1826)
+.++...+++++|.+.+|..-+--|+...++...++.|-+.|+.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 334444444444444444444444444444444444444444443
No 319
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=91.59 E-value=1.6 Score=47.30 Aligned_cols=88 Identities=10% Similarity=-0.101 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHH
Q 000227 1722 NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIEL 1800 (1826)
Q Consensus 1722 ~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~-~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~ 1800 (1826)
++.|+--++|..+=...| +.+.|.++|+-+|.+.+ ...-|+.++-++...|+|++|.+.|.+++..-|+.+......
T Consensus 32 ~~~l~~lY~~A~~ly~~G--~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~a 109 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVK--EFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 567788899999989999 88999999999998754 677799999999999999999999999999999999999999
Q ss_pred HHHHHhccccc
Q 000227 1801 LSFHFTSILSI 1811 (1826)
Q Consensus 1801 ~~~~~~~~~~~ 1811 (1826)
+..++.-|+..
T Consensus 110 g~c~L~lG~~~ 120 (157)
T PRK15363 110 AECYLACDNVC 120 (157)
T ss_pred HHHHHHcCCHH
Confidence 99998888754
No 320
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=91.52 E-value=1.2 Score=52.97 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=61.7
Q ss_pred HHHHHcCCCCHHHHHHHHHHHH-hcCCc---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHHHHHHHH
Q 000227 1733 NLENEYGNPPEEAVVKVFQRAL-QYCDP---KKVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVIIELLSFHF 1805 (1826)
Q Consensus 1733 ~lE~~~G~~~~e~~~~vf~~a~-~~~~~---~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~---~~~w~~~~~~~~ 1805 (1826)
.|-..-| +++.+...|+..+ .|+++ ...|..++.+|...|+++.|...|++++++||.+ +..|...+..+.
T Consensus 151 ~l~~~~~--~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~ 228 (263)
T PRK10803 151 ALVQDKS--RQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQ 228 (263)
T ss_pred HHHHhcC--CHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHH
Confidence 3433448 7899999999999 56665 5799999999999999999999999999999875 677777777776
Q ss_pred hccc
Q 000227 1806 TSIL 1809 (1826)
Q Consensus 1806 ~~~~ 1809 (1826)
..++
T Consensus 229 ~~g~ 232 (263)
T PRK10803 229 DKGD 232 (263)
T ss_pred HcCC
Confidence 6554
No 321
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.49 E-value=2.4 Score=55.83 Aligned_cols=117 Identities=12% Similarity=0.211 Sum_probs=75.3
Q ss_pred CchhHHHHHHHHHHh-cCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhcCCcHH
Q 000227 1684 NSSFVWIKYMAFMLS-MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN-PPEEAVVKVFQRALQYCDPKK 1761 (1826)
Q Consensus 1684 ~ss~lWi~y~~f~l~-~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~-~~~e~~~~vf~~a~~~~~~~k 1761 (1826)
-...+|+.|..+-.. +..+..||..+.++.- .... +|+.|+.=|...-. ++...+..+|++||-+.....
T Consensus 113 ~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~p---l~~~-----lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~ 184 (881)
T KOG0128|consen 113 YAQMVQLIGLLRKLGDLEKLRQARLEMSEIAP---LPPH-----LWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVP 184 (881)
T ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC---CChH-----HHHHHHHHHHhhccCcchhHHHHHHHHHhcccccch
Confidence 344667766665542 3346667777777632 2221 66666655543321 155778888888887777778
Q ss_pred HHHHHHHHHHH-------cCChHHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhcc
Q 000227 1762 VHLALLGLYER-------TEQNKLADELLYKMIKKF----KHSCKVIIELLSFHFTSI 1808 (1826)
Q Consensus 1762 v~~~~~~i~~~-------~~~~~~a~~~~~~~~kk~----~~~~~~w~~~~~~~~~~~ 1808 (1826)
+|.-++++... ++.++..|.+|+++++-. ..-..+|..|.+|+....
T Consensus 185 iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l 242 (881)
T KOG0128|consen 185 IWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYL 242 (881)
T ss_pred HHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHH
Confidence 88888887543 355778888888888755 334788888888865543
No 322
>PRK10811 rne ribonuclease E; Reviewed
Probab=91.36 E-value=0.44 Score=63.62 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=48.8
Q ss_pred CCCCEEEEEEEEEec--ceEEEEeCCCeEEEEEccccCCCccCC---------CCccCCCCcEEEEEEEEEe
Q 000227 1377 SPNMIVQGYVKNVTS--KGCFIMLSRKLDAKVLLSNLSDGYVES---------PEKEFPIGKLVAGRVLSVE 1437 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~--~GvFV~l~~~v~g~v~iselsd~~v~~---------~~~~f~vGq~V~~kVl~vd 1437 (1826)
.+|.++.|+|.+|-+ .++||+||.+..||++++|+...+..+ ....+++||.|-+.|..--
T Consensus 37 ~vGnIYkGkVenIvPGInAAFVDIG~gknGFL~L~Di~~~~f~~~~~~~~~~~i~~~Lk~GqeILVQV~KEa 108 (1068)
T PRK10811 37 KKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEE 108 (1068)
T ss_pred CccceEEEEEecccCCcceeEEEecCCcceEEEhhhccccccccccccccccccccccCCCCEEEEEEeecc
Confidence 479999999999966 589999999999999999996543222 1345789999999887643
No 323
>PLN03077 Protein ECB2; Provisional
Probab=91.28 E-value=2.2 Score=59.67 Aligned_cols=120 Identities=14% Similarity=0.100 Sum_probs=85.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hc--CC
Q 000227 1683 PNSSFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL-QY--CD 1758 (1826)
Q Consensus 1683 p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~-i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~-~~--~~ 1758 (1826)
+.+...|-..+.-..+.|+.++|.+++++..+. +...+ -.+.++|.-=..-| ..+.+..+|++.. ++ .+
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-----~T~~~ll~a~~~~g--~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-----VTFISLLCACSRSG--MVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-----ccHHHHHHHHhhcC--hHHHHHHHHHHHHHHhCCCC
Confidence 556677888888888888888888888887542 22222 14666665555567 6788888888887 44 35
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccc
Q 000227 1759 PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILSI 1811 (1826)
Q Consensus 1759 ~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~~ 1811 (1826)
....|..++..|.+.|++++|.+++++|- +.-+..+|-.+...+-.+++..
T Consensus 624 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m~--~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 624 NLKHYACVVDLLGRAGKLTEAYNFINKMP--ITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCChH
Confidence 66788888888888888888888888872 4346778888777765555543
No 324
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=91.18 E-value=3.7 Score=48.31 Aligned_cols=136 Identities=13% Similarity=0.225 Sum_probs=89.3
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHhCCCchh-----HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHH
Q 000227 1658 AAEERLLEKDAPRTPDEFERLVRSSPNSSF-----VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYF 1732 (1826)
Q Consensus 1658 ~~~~~~~~~~~p~s~~~fer~l~~~p~ss~-----lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l 1732 (1826)
.++....+++-.++...|++++...|++.. +|+.|+ +.++++.+.|...++|.++.-|..+..+..---+++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~a--yy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYA--YYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 333444456766889999999999999865 355444 4557999999999999999877766543221122222
Q ss_pred HHHHH------c-CC--C--CH---HHHHHHHHHHH-hcCCcHH----------H-------HHHHHHHHHHcCChHHHH
Q 000227 1733 NLENE------Y-GN--P--PE---EAVVKVFQRAL-QYCDPKK----------V-------HLALLGLYERTEQNKLAD 1780 (1826)
Q Consensus 1733 ~lE~~------~-G~--~--~~---e~~~~vf~~a~-~~~~~~k----------v-------~~~~~~i~~~~~~~~~a~ 1780 (1826)
+++.. | .- + +. ..|...|++.+ +||++.- + -+..+.+|.+.|+|.-|.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~ 195 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVV 195 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 22111 1 00 0 11 34557888888 6776311 1 123345688999999999
Q ss_pred HHHHHHHHHcCCCHH
Q 000227 1781 ELLYKMIKKFKHSCK 1795 (1826)
Q Consensus 1781 ~~~~~~~kk~~~~~~ 1795 (1826)
.=|+.+++.||+++.
T Consensus 196 ~r~~~v~~~Yp~t~~ 210 (243)
T PRK10866 196 NRVEQMLRDYPDTQA 210 (243)
T ss_pred HHHHHHHHHCCCCch
Confidence 999999999988744
No 325
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=91.05 E-value=2.4 Score=48.44 Aligned_cols=105 Identities=18% Similarity=0.193 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hcCCcHH---HH
Q 000227 1688 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL-QYCDPKK---VH 1763 (1826)
Q Consensus 1688 lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~-~~~~~~k---v~ 1763 (1826)
.+-.-+.-.++.|+.++|.+.+++.+..-|.....+.-.+|+++..+ ..| +.+.|...|++.+ +||.+.. ++
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y--~~~--~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY--KQG--DYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH--HTT---HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH--HcC--CHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 44556777889999999999999999988888877777889988876 457 7899999999999 5665432 33
Q ss_pred HHHHHHH-----------HHcCChHHHHHHHHHHHHHcCCCHHH
Q 000227 1764 LALLGLY-----------ERTEQNKLADELLYKMIKKFKHSCKV 1796 (1826)
Q Consensus 1764 ~~~~~i~-----------~~~~~~~~a~~~~~~~~kk~~~~~~~ 1796 (1826)
...+..+ .+.....+|...|+..+++||+|.-+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~ 126 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA 126 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence 3333332 22344568999999999999987433
No 326
>PLN02789 farnesyltranstransferase
Probab=91.05 E-value=2.7 Score=51.51 Aligned_cols=131 Identities=10% Similarity=0.025 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCC--HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000227 1669 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMAD--VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1826)
Q Consensus 1669 p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~e--i~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~ 1746 (1826)
.+..+-+++++..+|++..+|-...-...+++. .+++...+++|++.- .....+|...-.+-..+| ..+.+
T Consensus 89 ~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-----pkNy~AW~~R~w~l~~l~--~~~ee 161 (320)
T PLN02789 89 EEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-----AKNYHAWSHRQWVLRTLG--GWEDE 161 (320)
T ss_pred HHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-----cccHHHHHHHHHHHHHhh--hHHHH
Confidence 445677899999999999999844322233443 478888898997532 233468999888888999 78999
Q ss_pred HHHHHHHHhc-CCcHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 000227 1747 VKVFQRALQY-CDPKKVHLALLGLYERT---EQN----KLADELLYKMIKKFKHSCKVIIELLSFHFT 1806 (1826)
Q Consensus 1747 ~~vf~~a~~~-~~~~kv~~~~~~i~~~~---~~~----~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~ 1806 (1826)
.+.|+++++. +.....|.+...+.... +.+ +.+.+.+.++++..|+....|.-+.-++..
T Consensus 162 L~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 162 LEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 9999999965 45678888887776554 333 578888889999999999999777666654
No 327
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=90.91 E-value=2.7 Score=51.28 Aligned_cols=118 Identities=19% Similarity=0.092 Sum_probs=94.6
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hcCCcHH
Q 000227 1683 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL-QYCDPKK 1761 (1826)
Q Consensus 1683 p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~-~~~~~~k 1761 (1826)
-++-.|=+.|+....+++.-+.|-++.+.|++.- ++ +.+--.+.. ...| +.+...+..+.|+ +.++..-
T Consensus 260 r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~-~D---~~L~~~~~~----l~~~--d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 260 RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ-WD---PRLCRLIPR----LRPG--DPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-cC---hhHHHHHhh----cCCC--CchHHHHHHHHHHHhCCCChh
Confidence 4556788999999999999999999999999843 12 222222222 2356 5688999999999 6677889
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccc
Q 000227 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILSI 1811 (1826)
Q Consensus 1762 v~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~~ 1811 (1826)
+|+.+...|.+.+.|.+|.+.|+.+++.=+ |..-|...|..+...|...
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPE 378 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChH
Confidence 999999999999999999999999988766 7888988888888777654
No 328
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.80 E-value=4.5 Score=43.16 Aligned_cols=105 Identities=15% Similarity=0.141 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-----cH
Q 000227 1686 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-----PK 1760 (1826)
Q Consensus 1686 s~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~-----~~ 1760 (1826)
..-|-+-+.-.|+.++.+.|++.+++-...-|+.+-.+.-.+|++|..+.. | +.+.|...++|-++.+| +.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~--~--~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQ--G--DYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHc--c--CHHHHHHHHHHHHHhCCCCCCccH
Confidence 345556677778889999999999988888888887777788998888753 5 56888999999997665 23
Q ss_pred HHHHHHHHHHHH--------------cCChHHHHHHHHHHHHHcCCCH
Q 000227 1761 KVHLALLGLYER--------------TEQNKLADELLYKMIKKFKHSC 1794 (1826)
Q Consensus 1761 kv~~~~~~i~~~--------------~~~~~~a~~~~~~~~kk~~~~~ 1794 (1826)
-+|++-+.-|.+ .+....|..-|++.+++||+|.
T Consensus 86 a~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 86 AYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 334443333322 1236799999999999999864
No 329
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=90.74 E-value=1.9 Score=47.51 Aligned_cols=85 Identities=6% Similarity=-0.005 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-C---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHH
Q 000227 1722 NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-D---PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVI 1797 (1826)
Q Consensus 1722 ~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~-~---~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w 1797 (1826)
......|.....+=...| ..+.|...|++|+... + ...+|..++.+|...|++++|.+.|+++++..|.....|
T Consensus 32 ~~~a~~~~~~g~~~~~~g--~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEG--EYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred hHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 334567888888888889 8899999999999553 3 234899999999999999999999999999999889999
Q ss_pred HHHHHHHHhcc
Q 000227 1798 IELLSFHFTSI 1808 (1826)
Q Consensus 1798 ~~~~~~~~~~~ 1808 (1826)
...+..+...+
T Consensus 110 ~~la~i~~~~~ 120 (168)
T CHL00033 110 NNMAVICHYRG 120 (168)
T ss_pred HHHHHHHHHhh
Confidence 99988887443
No 330
>PLN03077 Protein ECB2; Provisional
Probab=90.69 E-value=1.6 Score=61.14 Aligned_cols=107 Identities=12% Similarity=0.121 Sum_probs=83.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh--cCCcHHHHHHHHHH
Q 000227 1692 YMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ--YCDPKKVHLALLGL 1769 (1826)
Q Consensus 1692 y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~--~~~~~kv~~~~~~i 1769 (1826)
.+..+.+.|+++.|++++++. . +. .-.|.++++-=...| ..+.|.++|++..+ ..|....|..++..
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~----~-~d----~~s~n~lI~~~~~~G--~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH----E-KD----VVSWNILLTGYVAHG--KGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc----C-CC----hhhHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 345666777888888777765 1 11 236999999888999 77999999999885 45677779999999
Q ss_pred HHHcCChHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHhccc
Q 000227 1770 YERTEQNKLADELLYKMIKKFKH--SCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1770 ~~~~~~~~~a~~~~~~~~kk~~~--~~~~w~~~~~~~~~~~~ 1809 (1826)
|.+.|.+++|.++|+.|.+.++- +...|...+..|.+.|.
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 99999999999999999987743 45677777777777765
No 331
>PRK10811 rne ribonuclease E; Reviewed
Probab=90.67 E-value=0.49 Score=63.21 Aligned_cols=65 Identities=25% Similarity=0.444 Sum_probs=51.9
Q ss_pred CCCCEEEEEEEEEeec--eEEEEEecCceEEEEEccccCccccc---------CccccCCCCCEEEEEEEEEeCCCC
Q 000227 1467 HVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSEDHVD---------NIETIYRAGEKVKVKILKVDKEKR 1532 (1826)
Q Consensus 1467 ~~G~iv~G~V~~v~~~--GvFV~l~~~~v~Gl~h~sels~~~~~---------~~~~~~~~Gd~Vk~kVl~id~e~~ 1532 (1826)
.+|+||.|+|.+|.+. ++||+|+. +..|++|++++...... +....+++||.|-|.|.+-....+
T Consensus 37 ~vGnIYkGkVenIvPGInAAFVDIG~-gknGFL~L~Di~~~~f~~~~~~~~~~~i~~~Lk~GqeILVQV~KEa~gtK 112 (1068)
T PRK10811 37 KKANIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNK 112 (1068)
T ss_pred CccceEEEEEecccCCcceeEEEecC-CcceEEEhhhccccccccccccccccccccccCCCCEEEEEEeecccCCC
Confidence 5899999999999876 99999986 89999999998533211 234568999999999998654443
No 332
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=90.62 E-value=3.3 Score=44.89 Aligned_cols=93 Identities=12% Similarity=0.085 Sum_probs=79.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Q 000227 1691 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY-CDPKKVHLALLGL 1769 (1826)
Q Consensus 1691 ~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~-~~~~kv~~~~~~i 1769 (1826)
.|+....+.|+++.|..+++-....=+ ....-|+.+--.-...| +.+.|...|.+|.+. ++.+..|..++..
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp-----~~~~y~~gLG~~~Q~~g--~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDA-----WSFDYWFRLGECCQAQK--HWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc-----ccHHHHHHHHHHHHHHh--hHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 567777899999999999998864222 22346999988888999 889999999999965 5788999999999
Q ss_pred HHHcCChHHHHHHHHHHHHHc
Q 000227 1770 YERTEQNKLADELLYKMIKKF 1790 (1826)
Q Consensus 1770 ~~~~~~~~~a~~~~~~~~kk~ 1790 (1826)
|...|+.+.|++.|+.++..+
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999
No 333
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=90.61 E-value=4.6 Score=43.28 Aligned_cols=108 Identities=15% Similarity=0.024 Sum_probs=79.7
Q ss_pred hcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-c---HHHHHHHHHHHHHc
Q 000227 1698 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-P---KKVHLALLGLYERT 1773 (1826)
Q Consensus 1698 ~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~-~---~kv~~~~~~i~~~~ 1773 (1826)
+.++.++++..+++-.+.-+.. .-....++.+.+.-..-| +.+.|...|+.++...+ + ...+++++.++...
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s--~ya~~A~l~lA~~~~~~g--~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~ 98 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSS--PYAALAALQLAKAAYEQG--DYDEAKAALEKALANAPDPELKPLARLRLARILLQQ 98 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCC--hHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc
Confidence 5788888888777776543322 111234555556666779 88999999999997653 2 45789999999999
Q ss_pred CChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 000227 1774 EQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILS 1810 (1826)
Q Consensus 1774 ~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~ 1810 (1826)
|++++|...++.. ..-+..+..|...+..++..|..
T Consensus 99 ~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 99 GQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred CCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCH
Confidence 9999999999774 33344577888999999988864
No 334
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.30 E-value=2.6 Score=51.95 Aligned_cols=125 Identities=15% Similarity=0.116 Sum_probs=96.8
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh-cCC--
Q 000227 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ-YCD-- 1758 (1826)
Q Consensus 1682 ~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~-~~~-- 1758 (1826)
...-...|+++++.-.+.|.++-|...+.++...-+..+ ....++-+++++|-..-| ..+.|...+++.+. ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~-~~~~~v~~e~akllw~~g--~~~~Ai~~L~~~~~~~~~~~ 218 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE-SLLPRVFLEYAKLLWAQG--EQEEAIQKLRELLKCRLSKN 218 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc-CCCcchHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhc
Confidence 445667999999999999999999999999975331111 113357888899989899 65777776666665 111
Q ss_pred --------------------------------cHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHcCCCHHHHHHH
Q 000227 1759 --------------------------------PKKVHLALLGLYERT------EQNKLADELLYKMIKKFKHSCKVIIEL 1800 (1826)
Q Consensus 1759 --------------------------------~~kv~~~~~~i~~~~------~~~~~a~~~~~~~~kk~~~~~~~w~~~ 1800 (1826)
..++|++++++.... ++.+.+...|..+++..|+..+.|..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~ 298 (352)
T PF02259_consen 219 IDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSW 298 (352)
T ss_pred cccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 246788888887777 899999999999999999999999999
Q ss_pred HHHHHhccc
Q 000227 1801 LSFHFTSIL 1809 (1826)
Q Consensus 1801 ~~~~~~~~~ 1809 (1826)
|.++.+...
T Consensus 299 a~~~~~~~~ 307 (352)
T PF02259_consen 299 ALFNDKLLE 307 (352)
T ss_pred HHHHHHHHH
Confidence 999766543
No 335
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=90.24 E-value=3.1 Score=55.69 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=78.5
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-ccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000227 1672 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI-NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1750 (1826)
Q Consensus 1672 ~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i-~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf 1750 (1826)
.+.+.|++.-+|++..+-...+.+..-.+++.++-.+++-|++.- +-.... .-++-+.......| +.|.|.+.|
T Consensus 256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a---es~Y~~gRs~Ha~G--d~ekA~~yY 330 (1018)
T KOG2002|consen 256 VQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA---ESFYQLGRSYHAQG--DFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH---HHHHHHHHHHHhhc--cHHHHHHHH
Confidence 556667777777777776767777777777888888887776522 111111 11333445567789 789999999
Q ss_pred HHHHhcCCcH--HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 000227 1751 QRALQYCDPK--KVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFH 1804 (1826)
Q Consensus 1751 ~~a~~~~~~~--kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~ 1804 (1826)
..|++.++.. --|.-++|+|+..|.++.|...|++.++.+|.+..+--..+..|
T Consensus 331 ~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Ly 386 (1018)
T KOG2002|consen 331 MESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLY 386 (1018)
T ss_pred HHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHH
Confidence 9999866543 22445566666666666666656555555555544444444333
No 336
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.15 E-value=0.48 Score=36.58 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC
Q 000227 1762 VHLALLGLYERTEQNKLADELLYKMIKKFKHS 1793 (1826)
Q Consensus 1762 v~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~ 1793 (1826)
.+.+++.+|.+.|++++|.++|++.+++||+|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 46778899999999999999999999999975
No 337
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=90.08 E-value=7.3 Score=50.92 Aligned_cols=140 Identities=12% Similarity=-0.050 Sum_probs=91.7
Q ss_pred CCCCHHHHHHHHHhCCCchhHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHH-HHHcCCC
Q 000227 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLS-----MADVEKARSIAERALQTINIREENEKLNIWVAYFNL-ENEYGNP 1741 (1826)
Q Consensus 1668 ~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~-----~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~l-E~~~G~~ 1741 (1826)
.|-...+.+|+...-|.+-..|=.||.-... ..+.++|+..+++|++.=|.- ..--.++++... -..++..
T Consensus 319 ~~l~~~e~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~---a~a~A~la~~~~~~~~~~~~ 395 (517)
T PRK10153 319 QPWPERMQERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF---TYAQAEKALADIVRHSQQPL 395 (517)
T ss_pred ccccHHHHHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHhcCCc
Confidence 3344555666655666666666666554322 235889999999998754421 111223223221 1223310
Q ss_pred ---CHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccccc
Q 000227 1742 ---PEEAVVKVFQRALQY---CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILSI 1811 (1826)
Q Consensus 1742 ---~~e~~~~vf~~a~~~---~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~~ 1811 (1826)
..+.+....++|+.. +....+|..++-.+...|++++|...|++++..-| +...|+.++++++..|+..
T Consensus 396 ~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 396 DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNR 470 (517)
T ss_pred cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHH
Confidence 124555666666543 33458899998888889999999999999999998 6889999999999888754
No 338
>PRK11906 transcriptional regulator; Provisional
Probab=89.87 E-value=3.5 Score=51.77 Aligned_cols=122 Identities=12% Similarity=0.012 Sum_probs=86.7
Q ss_pred HHHHHHHH---HhCCCchh--HHHHHHHHHH-------hcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcC
Q 000227 1672 PDEFERLV---RSSPNSSF--VWIKYMAFML-------SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYG 1739 (1826)
Q Consensus 1672 ~~~fer~l---~~~p~ss~--lWi~y~~f~l-------~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G 1739 (1826)
..-|+|++ ..+|+... .|+.+..|.. +..++..|+..++||++.=+ . ....+-+.+++. ...|
T Consensus 278 l~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~--Da~a~~~~g~~~--~~~~ 352 (458)
T PRK11906 278 MTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-V--DGKILAIMGLIT--GLSG 352 (458)
T ss_pred HHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-C--CHHHHHHHHHHH--Hhhc
Confidence 34688888 77887654 4444444433 23468899999999986332 2 222333444432 2346
Q ss_pred CCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC-----HHHHH-HH
Q 000227 1740 NPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS-----CKVII-EL 1800 (1826)
Q Consensus 1740 ~~~~e~~~~vf~~a~~~~-~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~-----~~~w~-~~ 1800 (1826)
..+.+..+|+||+..+ +....|..++-+..-+|+.+.|++..+++++.-|.. .++|+ .|
T Consensus 353 --~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 353 --QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred --chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 5689999999999665 577888888888899999999999999999988754 57888 54
No 339
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.75 E-value=6.8 Score=43.63 Aligned_cols=100 Identities=19% Similarity=0.126 Sum_probs=68.6
Q ss_pred HhcCCHHHHHHHHHHHHhhcccchhhhHH----HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHHH
Q 000227 1697 LSMADVEKARSIAERALQTINIREENEKL----NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYE 1771 (1826)
Q Consensus 1697 l~~~ei~kAR~i~erAl~~i~~re~~e~~----niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~-~~kv~~~~~~i~~ 1771 (1826)
..+|++++|-.-+.+||..++.--..++- |=-.|+|+| + ..+.+..-+..|++.++ -.+...+-+..|.
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl----~--k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKL----R--KWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHh----h--hHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 35677777877788887776643322222 223445544 4 44677777888997766 4666778889999
Q ss_pred HcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 000227 1772 RTEQNKLADELLYKMIKKFKHSCKVIIELLS 1802 (1826)
Q Consensus 1772 ~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~ 1802 (1826)
+..+|+.|.+=|++.+..-|.....--..++
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 9999999999999999988765544444433
No 340
>PRK11712 ribonuclease G; Provisional
Probab=89.53 E-value=0.68 Score=59.30 Aligned_cols=65 Identities=25% Similarity=0.380 Sum_probs=51.2
Q ss_pred ccCCCCEEEEEEEEEeec--eEEEEEecCceEEEEEccccCcc------------cccCccccCCCCCEEEEEEEEEeCC
Q 000227 1465 NLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSED------------HVDNIETIYRAGEKVKVKILKVDKE 1530 (1826)
Q Consensus 1465 ~~~~G~iv~G~V~~v~~~--GvFV~l~~~~v~Gl~h~sels~~------------~~~~~~~~~~~Gd~Vk~kVl~id~e 1530 (1826)
...+|+||.|+|.+|.+. ++||+|+. +-.|++|++++... ...++.+.+++||.|-+.|.+--..
T Consensus 35 ~~~vGnIY~G~V~~v~pg~~AAFVdIG~-~k~gFL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~Gq~iLVQV~Ke~~~ 113 (489)
T PRK11712 35 RGIVGNIYKGRVSRVLPGMQAAFVDIGL-DKAAFLHASDIVPHTECVAGEEQKQFVVRDISELVRQGQDIMVQVVKDPLG 113 (489)
T ss_pred ccccccEEEEEEeecCCCCceeEEeeCC-CccEEEEhhhccchhhhcccccccccccccHHHhccCCCEEEEEEEeCCcC
Confidence 445899999999999986 99999986 89999999997321 0112455699999999999985433
No 341
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.38 E-value=6.5 Score=46.62 Aligned_cols=130 Identities=16% Similarity=0.202 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHH---H
Q 000227 1652 REQEIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI---W 1728 (1826)
Q Consensus 1652 ~e~~~~~~~~~~~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~ni---W 1728 (1826)
+|..+.++.+-.-.++.++...-|..++..+|+++.+-+.|+...+..|+.+.|+.|+.- +|.......+.- |
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~~~~~l~a~ 209 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDKAAHGLQAQ 209 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----CcccchhhHHHHHHHH
Confidence 344455555544467788889999999999999999999999999999999999999865 343333333322 4
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc
Q 000227 1729 VAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1790 (1826)
Q Consensus 1729 ~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~ 1790 (1826)
++++.=-...+ ....+-.++-..++....=+.++..|...|+++.|.+.+-.++++-
T Consensus 210 i~ll~qaa~~~-----~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 210 IELLEQAAATP-----EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHHhcCC-----CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44443323333 2344445555778899999999999999999999999999888885
No 342
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=89.19 E-value=3.3 Score=53.81 Aligned_cols=123 Identities=12% Similarity=0.106 Sum_probs=92.5
Q ss_pred HhCCCchhHHHHH--HHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC
Q 000227 1680 RSSPNSSFVWIKY--MAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC 1757 (1826)
Q Consensus 1680 ~~~p~ss~lWi~y--~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~ 1757 (1826)
...|.+..+|..| +..+-..|+.++|-+..++||..-|.--+ ..+.-.++-...| +.+.|-..++.|.+.-
T Consensus 186 ~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e-----ly~~KarilKh~G--~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 186 EKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE-----LYMTKARILKHAG--DLKEAAEAMDEARELD 258 (517)
T ss_pred ccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHHHCC--CHHHHHHHHHHHHhCC
Confidence 4457788899888 77777899999999999999986655433 5666667778899 8899999999998765
Q ss_pred Cc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHc-CCCH------HHH--HHHHHHHHhccc
Q 000227 1758 DP-KKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSC------KVI--IELLSFHFTSIL 1809 (1826)
Q Consensus 1758 ~~-~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~-~~~~------~~w--~~~~~~~~~~~~ 1809 (1826)
.. .-+=.+.++.+.+.|++++|.+++...++.- .... -+| +..|+.++++|+
T Consensus 259 ~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~ 320 (517)
T PF12569_consen 259 LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD 320 (517)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh
Confidence 43 4455667788899999999999988887655 2122 255 455666666654
No 343
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=89.08 E-value=7.5 Score=46.34 Aligned_cols=136 Identities=18% Similarity=0.226 Sum_probs=99.9
Q ss_pred CCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHH-HHHHHHHHHHHHcCCCCHHH
Q 000227 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKL-NIWVAYFNLENEYGNPPEEA 1745 (1826)
Q Consensus 1667 ~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~-niW~a~l~lE~~~G~~~~e~ 1745 (1826)
+.-.++.-+.|++..+|++.-.-|.-...+++.|+.++|-+.++|+++--+. =..|-+ .+..+|- ..| ..+.
T Consensus 195 ~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~-yl~evl~~L~~~Y~----~lg--~~~~ 267 (389)
T COG2956 195 DVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE-YLSEVLEMLYECYA----QLG--KPAE 267 (389)
T ss_pred hHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH-HHHHHHHHHHHHHH----HhC--CHHH
Confidence 3444577788888888998888888888888999999998888888753221 011111 2344554 457 5588
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccc
Q 000227 1746 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILS 1810 (1826)
Q Consensus 1746 ~~~vf~~a~~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~ 1810 (1826)
....+.++++.+....+-+.++++.+...-.+.|..+..+-+++.| +...+.++..+.+....-
T Consensus 268 ~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daee 331 (389)
T COG2956 268 GLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccc
Confidence 8888888888888888888888877777778888888888888888 688888887776655443
No 344
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=88.97 E-value=6.9 Score=46.63 Aligned_cols=124 Identities=18% Similarity=0.290 Sum_probs=80.1
Q ss_pred hcccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHc---C
Q 000227 1663 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEY---G 1739 (1826)
Q Consensus 1663 ~~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~---G 1739 (1826)
+++.....+++-|-..+..+|..-.+=+..-.+.-+-||+|+|-.|-+-=++.-+..-+ .| -.|...|=..| |
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~-qr---~lAl~qL~~Dym~aG 121 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFE-QR---LLALQQLGRDYMAAG 121 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchH-HH---HHHHHHHHHHHHHhh
Confidence 45666778899999999999999999998999999999999998887766543322211 12 33444444444 5
Q ss_pred CCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 000227 1740 NPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1792 (1826)
Q Consensus 1740 ~~~~e~~~~vf~~a~~~~~-~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~ 1792 (1826)
=.++|+++|...++-++ ....-.+++.||....+|++|.++.++.++--++
T Consensus 122 --l~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 122 --LLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred --hhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 45777777777665333 3344455555555555555555555555544443
No 345
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.81 E-value=2.3 Score=53.83 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=82.3
Q ss_pred HHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Q 000227 1677 RLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY 1756 (1826)
Q Consensus 1677 r~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~ 1756 (1826)
+++.-.|++..-|+.-.=|.+-.+.+.+||..+.+|- +|+.. -. --|++|-+-=..-| +.|++..-|.+|-+.
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat-~lD~~-fg---paWl~fghsfa~e~--EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKAT-TLDPT-FG---PAWLAFGHSFAGEG--EHDQAMAAYFTAARL 375 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHh-hcCcc-cc---HHHHHHhHHhhhcc--hHHHHHHHHHHHHHh
Confidence 4556679999999999999999999999999999994 33211 11 25999887766667 668888888888877
Q ss_pred CCcHHHHHHHHH-HHHHcCChHHHHHHHHHHHHHcCCCH
Q 000227 1757 CDPKKVHLALLG-LYERTEQNKLADELLYKMIKKFKHSC 1794 (1826)
Q Consensus 1757 ~~~~kv~~~~~~-i~~~~~~~~~a~~~~~~~~kk~~~~~ 1794 (1826)
.+.-.+=.-|+. =|.+.++++.|.+.|..++..+|..+
T Consensus 376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp 414 (611)
T KOG1173|consen 376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDP 414 (611)
T ss_pred ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc
Confidence 653222222333 35678888888888888888887654
No 346
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=88.45 E-value=3.6 Score=53.11 Aligned_cols=124 Identities=17% Similarity=0.155 Sum_probs=86.9
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc--cchhhhHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHhc
Q 000227 1682 SPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN--IREENEKLNIWVAYFNLE---NEYGNPPEEAVVKVFQRALQY 1756 (1826)
Q Consensus 1682 ~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~--~re~~e~~niW~a~l~lE---~~~G~~~~e~~~~vf~~a~~~ 1756 (1826)
+|.-...-..|+.+++.++++.+|-.++++|+...- +-+..+ .+=..+.||= ..-| ..+.|+..++||+..
T Consensus 237 hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~--~va~~l~nLa~ly~~~G--Kf~EA~~~~e~Al~I 312 (508)
T KOG1840|consen 237 HLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP--AVAATLNNLAVLYYKQG--KFAEAEEYCERALEI 312 (508)
T ss_pred CHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhccC--ChHHHHHHHHHHHHH
Confidence 455444444689999999999999999999986321 111111 2333444433 4456 678899999999953
Q ss_pred ------CCcHHHHHH---HHHHHHHcCChHHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHhccc
Q 000227 1757 ------CDPKKVHLA---LLGLYERTEQNKLADELLYKMIKKFK--------HSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1757 ------~~~~kv~~~---~~~i~~~~~~~~~a~~~~~~~~kk~~--------~~~~~w~~~~~~~~~~~~ 1809 (1826)
..+..|-.. .+.++...+++++|..+|.++++.+. .-.++...++..|+.+|.
T Consensus 313 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk 382 (508)
T KOG1840|consen 313 YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGK 382 (508)
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcc
Confidence 345555444 44567888999999999999998773 336889999999888775
No 347
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=88.40 E-value=3.2 Score=49.94 Aligned_cols=139 Identities=17% Similarity=0.202 Sum_probs=86.0
Q ss_pred cCCCCCHHHHHHHHHhCC------CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhh---HHHHHHHHHHHHH
Q 000227 1666 KDAPRTPDEFERLVRSSP------NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE---KLNIWVAYFNLEN 1736 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p------~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e---~~niW~a~l~lE~ 1736 (1826)
.+-+++..-|+++....- .....|..-+.. ++..+.+.|...+++|+..- ++... --+....+.++-.
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~~~y--~~~G~~~~aA~~~~~lA~~ye 125 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANC-YKKGDPDEAIECYEKAIEIY--REAGRFSQAAKCLKELAEIYE 125 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHHH--HHCT-HHHHHHHHHHHHHHHC
T ss_pred hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhCHHHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHH
Confidence 345555566666543331 122344443333 34448999999999997643 22111 1134455555444
Q ss_pred Hc-CCCCHHHHHHHHHHHHhcC---C----cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC------C-HHHHHHHH
Q 000227 1737 EY-GNPPEEAVVKVFQRALQYC---D----PKKVHLALLGLYERTEQNKLADELLYKMIKKFKH------S-CKVIIELL 1801 (1826)
Q Consensus 1737 ~~-G~~~~e~~~~vf~~a~~~~---~----~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~------~-~~~w~~~~ 1801 (1826)
.- | +.+.|.+.|++|+.+. + ...++.+++.++.+.++|++|.++|++..+.+-+ + ...|+..+
T Consensus 126 ~~~~--d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 126 EQLG--DYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp CTT----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHcC--CHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 44 7 7899999999999652 2 4677899999999999999999999999987732 1 24566666
Q ss_pred HHHHhccc
Q 000227 1802 SFHFTSIL 1809 (1826)
Q Consensus 1802 ~~~~~~~~ 1809 (1826)
-+++..++
T Consensus 204 l~~L~~~D 211 (282)
T PF14938_consen 204 LCHLAMGD 211 (282)
T ss_dssp HHHHHTT-
T ss_pred HHHHHcCC
Confidence 66666554
No 348
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.21 E-value=2.6 Score=49.83 Aligned_cols=106 Identities=17% Similarity=-0.017 Sum_probs=75.0
Q ss_pred HhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHcCC
Q 000227 1697 LSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQ 1775 (1826)
Q Consensus 1697 l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~-~~kv~~~~~~i~~~~~~ 1775 (1826)
++.++++.|-.-..+||+.-|..-. =-+|==-||.. +| .++.|.+-++.|+++.+ ..+.|.+|.-.|...|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nAV-yycNRAAAy~~----Lg--~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNAV-YYCNRAAAYSK----LG--EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcch-HHHHHHHHHHH----hc--chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 4566777777778888775543221 01122234444 57 56888888999998876 58999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCCHHHHH--HHHHHHHhccc
Q 000227 1776 NKLADELLYKMIKKFKHSCKVII--ELLSFHFTSIL 1809 (1826)
Q Consensus 1776 ~~~a~~~~~~~~kk~~~~~~~w~--~~~~~~~~~~~ 1809 (1826)
+++|.+.|+++|...|.....|- .+|+-.+++..
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998776664 44444555554
No 349
>KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription]
Probab=87.81 E-value=2.3 Score=45.46 Aligned_cols=59 Identities=22% Similarity=0.263 Sum_probs=40.7
Q ss_pred CCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCCc--c--CC-C------CccCCCCcEEEEEEEEEe
Q 000227 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDGY--V--ES-P------EKEFPIGKLVAGRVLSVE 1437 (1826)
Q Consensus 1378 ~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~~--v--~~-~------~~~f~vGq~V~~kVl~vd 1437 (1826)
.|++|.|.|+.|++.|+|+++|+ ++.++.---...+| . ++ | .....+|..|+.+|+.+.
T Consensus 81 KGEVvdgvV~~Vnk~G~F~~~GP-l~~f~sshl~ppd~~f~p~~n~P~f~~~d~s~I~~~~~VR~kiigtr 150 (170)
T KOG3298|consen 81 KGEVVDGVVTKVNKMGVFARSGP-LEVFYSSHLKPPDYEFDPGENPPNFQTEDESVIQKGVEVRLKIIGTR 150 (170)
T ss_pred CCcEEEEEEEEEeeeeEEEeccc-eEeeeecccCCCCcccCCCCCCCcccccccceeeeCcEEEEEEEEEE
Confidence 59999999999999999999995 55555433223222 1 12 1 224667888888888764
No 350
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.72 E-value=1.2 Score=34.55 Aligned_cols=32 Identities=16% Similarity=0.002 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 000227 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKH 1792 (1826)
Q Consensus 1761 kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~ 1792 (1826)
++|..++.+|...|++++|++.|+++++..|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 67999999999999999999999999999885
No 351
>cd05701 S1_Rrp5_repeat_hs10 S1_Rrp5_repeat_hs10: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 10 (hs10). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=87.37 E-value=0.47 Score=42.30 Aligned_cols=58 Identities=16% Similarity=0.316 Sum_probs=47.6
Q ss_pred CEEEEEEEEEeCCEEEEEECCCceEEEEccccCCCCchhhhh-ccccCCCCEEEEEEEEEe
Q 000227 1165 QRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEF-QRRFHIGKAVTGHVLSIN 1224 (1826)
Q Consensus 1165 ~~v~g~V~~v~~~~l~V~i~~~~~g~l~~~~~s~~~~~l~~~-~~~f~vG~~v~v~V~~vd 1224 (1826)
...++.|..+.++++.|++. -.|.+.+...+.+.++...+ .+++++|+.+.+.+....
T Consensus 2 S~htA~VQh~~kdfAvvSL~--~t~~L~a~p~~sHLNdtfrf~seklkvG~~l~v~lk~~~ 60 (69)
T cd05701 2 SRHTAIVQHADKDFAIVSLA--TTGDLAAFPTRSHLNDTFRFDSEKLSVGQCLDVTLKDPN 60 (69)
T ss_pred CccchhhhhhhhceEEEEee--ccccEEEEEchhhccccccccceeeeccceEEEEEecCc
Confidence 45688999999999999996 45778888888888777666 678999999999987644
No 352
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.28 E-value=1.8 Score=51.47 Aligned_cols=85 Identities=25% Similarity=0.245 Sum_probs=65.2
Q ss_pred HHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHcC
Q 000227 1696 MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY-CDPKKVHLALLGLYERTE 1774 (1826)
Q Consensus 1696 ~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~-~~~~kv~~~~~~i~~~~~ 1774 (1826)
.+...++..||..++-++. -.|||...++.|+|+-++ .+| +++.|-.+|+-+++. +.+.++|..++-.+.-.|
T Consensus 32 fls~rDytGAislLefk~~--~~~EEE~~~~lWia~C~f--hLg--dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLN--LDREEEDSLQLWIAHCYF--HLG--DYEEALNVYTFLMNKDDAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHhcccchhHHHHHHHhhc--cchhhhHHHHHHHHHHHH--hhc--cHHHHHHHHHHHhccCCCCcccchhHHHHHHHHH
Confidence 3456788899999998862 235555589999999887 579 889999999999964 446778777777666678
Q ss_pred ChHHHHHHHHHH
Q 000227 1775 QNKLADELLYKM 1786 (1826)
Q Consensus 1775 ~~~~a~~~~~~~ 1786 (1826)
.|.+|..+.+++
T Consensus 106 ~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 106 QYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHhhC
Confidence 888888776554
No 353
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=87.07 E-value=15 Score=40.20 Aligned_cols=134 Identities=18% Similarity=0.187 Sum_probs=98.2
Q ss_pred CCCCHHHHHHHHHhCCCchhHHHHHHH-HHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000227 1668 APRTPDEFERLVRSSPNSSFVWIKYMA-FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1826)
Q Consensus 1668 ~p~s~~~fer~l~~~p~ss~lWi~y~~-f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~ 1746 (1826)
-..+...+..++...++....|..+.. .....++++.|...+++|+. +... .......+..+.......| ..+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~--~~~~a 186 (291)
T COG0457 111 YEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE-LDPE-LNELAEALLALGALLEALG--RYEEA 186 (291)
T ss_pred HHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCC-ccchHHHHHHhhhHHHHhc--CHHHH
Confidence 345667777777777777666666666 78889999999999999977 3321 0111223344444445567 67899
Q ss_pred HHHHHHHHhcCCc--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 000227 1747 VKVFQRALQYCDP--KKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHF 1805 (1826)
Q Consensus 1747 ~~vf~~a~~~~~~--~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~ 1805 (1826)
...+.+++...+. ...+..+...|...+.++.|...+..++...+.....|...+..+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (291)
T COG0457 187 LELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL 247 (291)
T ss_pred HHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence 9999999976655 7888888889999999999999999999999876666666666655
No 354
>PRK11712 ribonuclease G; Provisional
Probab=86.95 E-value=1.3 Score=56.75 Aligned_cols=59 Identities=17% Similarity=0.152 Sum_probs=45.6
Q ss_pred CCCCEEEEEEEEEec--ceEEEEeCCCeEEEEEccccCCC--cc-C---------CCCccCCCCcEEEEEEEE
Q 000227 1377 SPNMIVQGYVKNVTS--KGCFIMLSRKLDAKVLLSNLSDG--YV-E---------SPEKEFPIGKLVAGRVLS 1435 (1826)
Q Consensus 1377 ~~G~~v~G~V~~v~~--~GvFV~l~~~v~g~v~iselsd~--~v-~---------~~~~~f~vGq~V~~kVl~ 1435 (1826)
.+|.++.|+|.+|.+ .++||+||.+..||+|++|+... +. . ...+.+++||.|-+.|+.
T Consensus 37 ~vGnIY~G~V~~v~pg~~AAFVdIG~~k~gFL~~~d~~~~~~~~~~~~~~~~~~~~i~~~l~~Gq~iLVQV~K 109 (489)
T PRK11712 37 IVGNIYKGRVSRVLPGMQAAFVDIGLDKAAFLHASDIVPHTECVAGEEQKQFVVRDISELVRQGQDIMVQVVK 109 (489)
T ss_pred ccccEEEEEEeecCCCCceeEEeeCCCccEEEEhhhccchhhhcccccccccccccHHHhccCCCEEEEEEEe
Confidence 589999999999977 58999999999999999998321 10 0 112347889998888764
No 355
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.92 E-value=2.9 Score=49.40 Aligned_cols=121 Identities=16% Similarity=0.142 Sum_probs=95.1
Q ss_pred CCCCHHHH-HHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000227 1668 APRTPDEF-ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1826)
Q Consensus 1668 ~p~s~~~f-er~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~ 1746 (1826)
.|+-+--| .|+|..--.|..|+..-.=.-+-.++||-+-.-.+||+.+... +.+.-.||+.+=..-...| +.-.|
T Consensus 339 ~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~--~~~aaDvWYNlg~vaV~iG--D~nlA 414 (478)
T KOG1129|consen 339 NPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ--PGQAADVWYNLGFVAVTIG--DFNLA 414 (478)
T ss_pred ChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC--cchhhhhhhccceeEEecc--chHHH
Confidence 45544444 4444444556667666555555667889999999999987643 3456789998888778889 88999
Q ss_pred HHHHHHHH-hcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 000227 1747 VKVFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1792 (1826)
Q Consensus 1747 ~~vf~~a~-~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~ 1792 (1826)
..-|.-|+ ..+++-..+..++-+..++|+++.||.+|..+..+-|+
T Consensus 415 ~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 415 KRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 99999999 56788999999999999999999999999999888885
No 356
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=86.77 E-value=2.2 Score=55.47 Aligned_cols=137 Identities=20% Similarity=0.170 Sum_probs=101.2
Q ss_pred cCCCCCHHHHHHHHHhCCCch-hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHH
Q 000227 1666 KDAPRTPDEFERLVRSSPNSS-FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~ss-~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e 1744 (1826)
+++-..+.=||++.+.+-.-+ ..=...+-..++.+++++|-+-++|+++.-|.- +.+|..+=-.=...+ +++
T Consensus 464 GDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq-----~~~wf~~G~~ALqle--k~q 536 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQ-----LGTWFGLGCAALQLE--KEQ 536 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccc-----hhHHHhccHHHHHHh--hhH
Confidence 456777888999987664432 211111222355789999999999999644433 236765433333444 445
Q ss_pred HHHHHHHHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1745 AVVKVFQRALQY-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1745 ~~~~vf~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
.+-+-|.|+++. ++...-|..+...|++.++-.+|+..+.+++|---+++++|-+|....++-|.
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc
Confidence 578889999965 68999999999999999999999999999999777789999999988766553
No 357
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.77 E-value=6.3 Score=48.50 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=80.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccc----hhhhHH--H-HHHHHHHHHHHcCCC-CHHHHHHHHHHHHhc-CCcHHHHH
Q 000227 1694 AFMLSMADVEKARSIAERALQTINIR----EENEKL--N-IWVAYFNLENEYGNP-PEEAVVKVFQRALQY-CDPKKVHL 1764 (1826)
Q Consensus 1694 ~f~l~~~ei~kAR~i~erAl~~i~~r----e~~e~~--n-iW~a~l~lE~~~G~~-~~e~~~~vf~~a~~~-~~~~kv~~ 1764 (1826)
.++.+.+.+..|-.-++||++.|+++ ++.++. . --..++||-..|-.. .+..|...+.+++.. ++..|.-.
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 36678889999999999999998753 222222 1 244555655544321 456788888888844 56677777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 000227 1765 ALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSF 1803 (1826)
Q Consensus 1765 ~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~ 1803 (1826)
+-++.|...+.|+.||..|+++++..|.+..+=..++.+
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 889999999999999999999999999887766655554
No 358
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=86.62 E-value=11 Score=40.28 Aligned_cols=63 Identities=14% Similarity=0.095 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc
Q 000227 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQY-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1790 (1826)
Q Consensus 1726 niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~ 1790 (1826)
+++..++......| +.+.+..++++++.. |-...+|..++..|...|+...|.++|+++.+.+
T Consensus 63 ~~~~~l~~~~~~~~--~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 63 DALERLAEALLEAG--DYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHHTT---HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 56788888888899 889999999999965 5578899999999999999999999999998776
No 359
>KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis]
Probab=85.84 E-value=1.8 Score=46.45 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=47.3
Q ss_pred CCCcEEEEEEEEEecCcEEEEe--------CCCeEEeecCCCcccc--cccCCCCCcCCCCEEEEEEEEE-eCCeEEEE
Q 000227 497 KPGMVVKGKVIAVDSFGAIVQF--------PGGVKALCPLPHMSEF--EIVKPGKKFKVGAELVFRVLGV-KSKRITVT 564 (1826)
Q Consensus 497 ~~G~iv~g~V~~v~~~G~~V~i--------~~~v~G~Vp~~hlsd~--~l~~p~~~fkvG~~Vk~rVL~v-~~~~i~LS 564 (1826)
..|++|.++|..++.-=+-|+| .+.+.|+++...+-.. ...++-+.|++|+-|.|+|++. ....-.||
T Consensus 67 ~~G~IVtarV~~i~~rfAkv~I~~V~d~~lk~~FrglirkqdvR~tEkdrv~v~ksFrPgDiVlAkVis~~~~~~y~LT 145 (193)
T KOG3409|consen 67 FVGAIVTARVSRINLRFAKVDILSVGDKPLKKSFRGLIRKQDVRATEKDRVKVYKSFRPGDIVLAKVISLGDGSNYLLT 145 (193)
T ss_pred ccCcEEEEEEEeeccceeeEEEEEEcCEEhhhhhcceeehhhccccccchhhhhhccCCCcEEEEEEeecCCCCcEEEE
Confidence 3577888888777665444444 2468899998766433 3345667899999999999987 34445555
No 360
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=85.62 E-value=17 Score=37.83 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hcCC---cHHHH
Q 000227 1688 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL-QYCD---PKKVH 1763 (1826)
Q Consensus 1688 lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~-~~~~---~~kv~ 1763 (1826)
+|...+..+=.+|+-++|-.++++|+..-.. .......|+.+-.--...| ..+.+..+|+.++ ++++ ...+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~--~~~~~~a~i~lastlr~LG--~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLS--GADRRRALIQLASTLRNLG--RYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHCCCccccHHHH
Confidence 4555666666778888888888888763222 1223457777777777888 6688888888888 4565 44555
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q 000227 1764 LALLGLYERTEQNKLADELLYKMIK 1788 (1826)
Q Consensus 1764 ~~~~~i~~~~~~~~~a~~~~~~~~k 1788 (1826)
.-++-.+...|++++|.+.+-.++-
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555566777888888777766654
No 361
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=85.55 E-value=2.9 Score=39.43 Aligned_cols=64 Identities=20% Similarity=0.219 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc----CC----cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 000227 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQY----CD----PKKVHLALLGLYERTEQNKLADELLYKMIKKFK 1791 (1826)
Q Consensus 1726 niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~----~~----~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~ 1791 (1826)
+++.-+..+-...| +.+.|...|++|++. .+ -...|..++.+|...|++++|.+.|+++++-+.
T Consensus 6 ~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 6 NAYNNLARVYRELG--RYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 34555555556788 889999999999953 22 245688899999999999999999999998763
No 362
>KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription]
Probab=85.25 E-value=4.5 Score=43.31 Aligned_cols=65 Identities=25% Similarity=0.415 Sum_probs=44.3
Q ss_pred CCCEEEEEEEEEeeceEEEEEecCceEEEE--E--ccccCcccccC-------ccccCCCCCEEEEEEEEEeCCCCeE
Q 000227 1468 VGDIVIGQIKRVESYGLFITIENTNLVGLC--H--VSELSEDHVDN-------IETIYRAGEKVKVKILKVDKEKRRI 1534 (1826)
Q Consensus 1468 ~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~--h--~sels~~~~~~-------~~~~~~~Gd~Vk~kVl~id~e~~rI 1534 (1826)
.|+++.|.|+.+..-|+|+++++ ++-++ | ..++.-..-+| -.+....|.+|+.+|+....+...|
T Consensus 81 KGEVvdgvV~~Vnk~G~F~~~GP--l~~f~sshl~ppd~~f~p~~n~P~f~~~d~s~I~~~~~VR~kiigtr~~~~~i 156 (170)
T KOG3298|consen 81 KGEVVDGVVTKVNKMGVFARSGP--LEVFYSSHLKPPDYEFDPGENPPNFQTEDESVIQKGVEVRLKIIGTRVDETEI 156 (170)
T ss_pred CCcEEEEEEEEEeeeeEEEeccc--eEeeeecccCCCCcccCCCCCCCcccccccceeeeCcEEEEEEEEEEEeeeeE
Confidence 69999999999999999999976 33332 2 22221111111 1236889999999999987655554
No 363
>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins [].
Probab=85.22 E-value=3.5 Score=40.86 Aligned_cols=60 Identities=23% Similarity=0.451 Sum_probs=49.0
Q ss_pred cccccccCCCCcEEEEEEEEEecCcEEEEeCCCeEEeecCCCcccccccCCCCCcCCCCEEEEEEEEE
Q 000227 489 LVFTHSDVKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEFEIVKPGKKFKVGAELVFRVLGV 556 (1826)
Q Consensus 489 ~~~~~~~l~~G~iv~g~V~~v~~~G~~V~i~~~v~G~Vp~~hlsd~~l~~p~~~fkvG~~Vk~rVL~v 556 (1826)
+++.+.+ ..|-+|.|+|..+...-++++++..+.++|+.... -.++|..|..|+.|+...
T Consensus 15 ~fi~lG~-~~gk~V~G~I~hvv~ddLYIDfG~KFhcVc~rp~~-------~~~~y~~G~rV~lrLkdl 74 (104)
T PF10246_consen 15 PFIQLGD-PEGKIVIGKIFHVVDDDLYIDFGGKFHCVCKRPAV-------NGEKYVRGSRVRLRLKDL 74 (104)
T ss_pred hhhhcCC-ccCCEEEEEEEEEecCceEEEeCCceeEEEecccc-------cccccccCCEEEEEECCH
Confidence 4555666 57999999999999999999999999999984332 225799999999998654
No 364
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.98 E-value=9.4 Score=42.65 Aligned_cols=100 Identities=16% Similarity=0.120 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Q 000227 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLAL 1766 (1826)
Q Consensus 1687 ~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~~~kv~~~~ 1766 (1826)
..|+..+.|+.+.|+++.|.+.+.|+...... ...++++|+..+.+=..+| +...+.....+|-...+...=|.+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~--~~~~id~~l~~irv~i~~~--d~~~v~~~i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTS--PGHKIDMCLNVIRVAIFFG--DWSHVEKYIEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC--HHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHhccchHHHH
Confidence 46778899999999999999999999765432 3558899999999999999 8899999999988665432223222
Q ss_pred HHH-------HHHcCChHHHHHHHHHHHHHc
Q 000227 1767 LGL-------YERTEQNKLADELLYKMIKKF 1790 (1826)
Q Consensus 1767 ~~i-------~~~~~~~~~a~~~~~~~~kk~ 1790 (1826)
.++ +...++|..|-++|-...--|
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 221 234456666666555554444
No 365
>PRK11906 transcriptional regulator; Provisional
Probab=84.90 E-value=1.8 Score=54.22 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=67.2
Q ss_pred hcccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHH-HHHHHHHHcCCC
Q 000227 1663 LLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWV-AYFNLENEYGNP 1741 (1826)
Q Consensus 1663 ~~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~-a~l~lE~~~G~~ 1741 (1826)
++.++.-.+...|+|+++.|||+...|..+.-.+.-.|+.+.|++-+++|++.-|.|--..-+..|+ -| |-+
T Consensus 349 ~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~------~~~- 421 (458)
T PRK11906 349 GLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY------VPN- 421 (458)
T ss_pred HhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH------cCC-
Confidence 3455577789999999999999999999999999999999999999999999888887666667787 33 332
Q ss_pred CHHHHHHHHHHHH
Q 000227 1742 PEEAVVKVFQRAL 1754 (1826)
Q Consensus 1742 ~~e~~~~vf~~a~ 1754 (1826)
..+.+.++|.+-.
T Consensus 422 ~~~~~~~~~~~~~ 434 (458)
T PRK11906 422 PLKNNIKLYYKET 434 (458)
T ss_pred chhhhHHHHhhcc
Confidence 2455666655433
No 366
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=84.30 E-value=24 Score=41.22 Aligned_cols=118 Identities=12% Similarity=0.072 Sum_probs=64.8
Q ss_pred CCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000227 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1826)
Q Consensus 1667 ~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~ 1746 (1826)
+.-++..-...+...+|..-.+--.|.+-++++|++..|-..+.||.. +... .|..|...----.+.| +.+.|
T Consensus 81 ~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~----d~~~~~~lgaaldq~G--r~~~A 153 (257)
T COG5010 81 DADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPT----DWEAWNLLGAALDQLG--RFDEA 153 (257)
T ss_pred cccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCC----ChhhhhHHHHHHHHcc--ChhHH
Confidence 333444444444555555555555566666666666666666666653 2211 1334444443344556 55666
Q ss_pred HHHHHHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 000227 1747 VKVFQRALQY-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK 1791 (1826)
Q Consensus 1747 ~~vf~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~ 1791 (1826)
+.-|-+|++. +....++..++-.|.-.|+++.|+.++..+.-.=+
T Consensus 154 r~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 154 RRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 6666666643 34555555566566666666666666666544433
No 367
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.27 E-value=25 Score=40.91 Aligned_cols=126 Identities=12% Similarity=0.117 Sum_probs=73.5
Q ss_pred cCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHH
Q 000227 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~ 1745 (1826)
++-.++.+-|+++|.-+|.+..+.-+-.+--.-.|.--.|-+-+-.=+++-..+. ..|-.+.++=...| +.+.
T Consensus 100 ~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~-----EAW~eLaeiY~~~~--~f~k 172 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQ-----EAWHELAEIYLSEG--DFEK 172 (289)
T ss_pred hchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHhHh--HHHH
Confidence 3445557777777777777777666555544444421111111111122211121 26777777777777 6677
Q ss_pred HHHHHHHHHhcCC-cHHHHHHHHHHHHHc---CChHHHHHHHHHHHHHcCCCHHHHH
Q 000227 1746 VVKVFQRALQYCD-PKKVHLALLGLYERT---EQNKLADELLYKMIKKFKHSCKVII 1798 (1826)
Q Consensus 1746 ~~~vf~~a~~~~~-~~kv~~~~~~i~~~~---~~~~~a~~~~~~~~kk~~~~~~~w~ 1798 (1826)
|-=-+++.+-.+| .+-.|.+|+.++.-. .+++.||++|+++++.++++..-|.
T Consensus 173 A~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 173 AAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence 7666777664444 566677777764322 3667788888888888876555554
No 368
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=84.12 E-value=9.7 Score=50.10 Aligned_cols=117 Identities=21% Similarity=0.108 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHH-HHH-HcCCCCHHHHHHHHHHHHhc-CCcHHH
Q 000227 1686 SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN-LEN-EYGNPPEEAVVKVFQRALQY-CDPKKV 1762 (1826)
Q Consensus 1686 s~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~-lE~-~~G~~~~e~~~~vf~~a~~~-~~~~kv 1762 (1826)
..+|+..+...+..++-+.||..+..|-+.. .+..|+-|++ ++. .-| ..+-|.+.|..|+-. |++...
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-------~l~~~~~~~~G~~~~~~~--~~~EA~~af~~Al~ldP~hv~s 720 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKID-------PLSASVYYLRGLLLEVKG--QLEEAKEAFLVALALDPDHVPS 720 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-------hhhHHHHHHhhHHHHHHH--hhHHHHHHHHHHHhcCCCCcHH
Confidence 4799999999999999999998888885432 2346777777 444 346 668899999999954 567888
Q ss_pred HHHHHHHHHHcCChHHHHH--HHHHHHHHcCCCHHHHHHHHHHHHhccccc
Q 000227 1763 HLALLGLYERTEQNKLADE--LLYKMIKKFKHSCKVIIELLSFHFTSILSI 1811 (1826)
Q Consensus 1763 ~~~~~~i~~~~~~~~~a~~--~~~~~~kk~~~~~~~w~~~~~~~~~~~~~~ 1811 (1826)
--.++.++.+.|+-..|.. +...|++-=|.+++.|...++.+..+|+..
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence 8899999999997766655 999999999999999999999999999876
No 369
>KOG3409 consensus Exosomal 3'-5' exoribonuclease complex, subunit ski4 (Csl4) [Translation, ribosomal structure and biogenesis]
Probab=84.08 E-value=4.8 Score=43.43 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=53.8
Q ss_pred CCCCCEEEEEEEEEeCCEEEEEEC--------CCceEEEEccccCCCCchhhhhccccCCCCEEEEEEEEEeCCCc
Q 000227 1161 VSIGQRVTGYVYKVDNEWALLTIS--------RHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKK 1228 (1826)
Q Consensus 1161 ~~~G~~v~g~V~~v~~~~l~V~i~--------~~~~g~l~~~~~s~~~~~l~~~~~~f~vG~~v~v~V~~vd~~~~ 1228 (1826)
..+|++|++.|..++..++-|+|. ...+|.|+..++-.--.+.-.+.+.|.+|+.|.++|++.+.+.+
T Consensus 66 P~~G~IVtarV~~i~~rfAkv~I~~V~d~~lk~~FrglirkqdvR~tEkdrv~v~ksFrPgDiVlAkVis~~~~~~ 141 (193)
T KOG3409|consen 66 PFVGAIVTARVSRINLRFAKVDILSVGDKPLKKSFRGLIRKQDVRATEKDRVKVYKSFRPGDIVLAKVISLGDGSN 141 (193)
T ss_pred CccCcEEEEEEEeeccceeeEEEEEEcCEEhhhhhcceeehhhccccccchhhhhhccCCCcEEEEEEeecCCCCc
Confidence 478999999999999988887763 25789999887765444445677889999999999999665444
No 370
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=83.88 E-value=42 Score=41.46 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=102.5
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cccchhhhHH--------
Q 000227 1655 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKL-------- 1725 (1826)
Q Consensus 1655 ~~~~~~~~~~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~-i~~re~~e~~-------- 1725 (1826)
+|..+|--+..++.|.++...+.++...|+.-.+---....+++.|+....-.++..--+. +-..+|...+
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 5777776666888999999999999999999998777778888888766655555432111 0011111111
Q ss_pred ----------------------------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCChH
Q 000227 1726 ----------------------------NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNK 1777 (1826)
Q Consensus 1726 ----------------------------niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~~~kv~~~~~~i~~~~~~~~ 1777 (1826)
+|=++|+.==...| .++.|.++.+.++...-...+...+.. .+.++..
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~--~~~~A~~~i~~~Lk~~~D~~L~~~~~~--l~~~d~~ 311 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLG--DHDEAQEIIEDALKRQWDPRLCRLIPR--LRPGDPE 311 (400)
T ss_pred HHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcC--ChHHHHHHHHHHHHhccChhHHHHHhh--cCCCCch
Confidence 35566665556677 778888888888844322232222211 3567777
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1778 LADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1778 ~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
.-.+..+..++..|.++.+|...++.++++..
T Consensus 312 ~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~ 343 (400)
T COG3071 312 PLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL 343 (400)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH
Confidence 88888888888899899999999988887653
No 371
>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B.
Probab=83.39 E-value=3.3 Score=43.12 Aligned_cols=60 Identities=27% Similarity=0.211 Sum_probs=45.9
Q ss_pred CCCEEEEEEEEEecceEEEEeCCCeEEEEEccccCCC--cc-----------CCCCccCCCCcEEEEEEEEEe
Q 000227 1378 PNMIVQGYVKNVTSKGCFIMLSRKLDAKVLLSNLSDG--YV-----------ESPEKEFPIGKLVAGRVLSVE 1437 (1826)
Q Consensus 1378 ~G~~v~G~V~~v~~~GvFV~l~~~v~g~v~iselsd~--~v-----------~~~~~~f~vGq~V~~kVl~vd 1437 (1826)
+|+++.|+|++.+..|+.|.|+---+.+|+...|... |- .+-+-.|..|+.|++||.++.
T Consensus 3 ~gEvl~g~I~~~~~~Gi~vslgFFddI~IP~~~L~~ps~fd~~~~~W~W~~~~~~~l~~d~ge~IRFRV~~~~ 75 (122)
T PF08292_consen 3 VGEVLTGKIKSSTAEGIRVSLGFFDDIFIPPSLLPEPSRFDEEEQAWVWEYDEEQELFFDIGEEIRFRVESEI 75 (122)
T ss_dssp TT-EEEEEEEEEETTEEEEEECCEEEEEEECCCC-TTEEEECCCTEEEEEESSSEEEEE-TT-EEEEEEEEEE
T ss_pred CCCEEEEEEEecCCCcEEEEecccccEEECHHHCCCCCccCccCCEEEEECCCCceeEccCCCEEEEEEeEEE
Confidence 6999999999999999999999889999999998852 21 112235689999999998875
No 372
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=83.23 E-value=17 Score=40.20 Aligned_cols=108 Identities=10% Similarity=0.050 Sum_probs=58.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC---cHHHHHHHHHHH
Q 000227 1694 AFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD---PKKVHLALLGLY 1770 (1826)
Q Consensus 1694 ~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~---~~kv~~~~~~i~ 1770 (1826)
.--.++|....|+...+.|+.-|=..+- .+-+-+.+--...+ +...|..+++..+++|+ +..-++.++..|
T Consensus 97 ~al~elGr~~EA~~hy~qalsG~fA~d~----a~lLglA~Aqfa~~--~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 97 NALAELGRYHEAVPHYQQALSGIFAHDA----AMLLGLAQAQFAIQ--EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHhhhhhhhHHHHHHHhccccCCCH----HHHHHHHHHHHhhc--cHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 3334556666666666666543322221 13333333333445 33555566666666554 234455566666
Q ss_pred HHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Q 000227 1771 ERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSI 1808 (1826)
Q Consensus 1771 ~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~ 1808 (1826)
.-.|++..|+..|+.++.-|| .+.--+.|+.|+.++|
T Consensus 171 aa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qg 207 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQG 207 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhc
Confidence 666666666666666666666 3555566666666665
No 373
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=83.20 E-value=5 Score=38.80 Aligned_cols=65 Identities=23% Similarity=0.221 Sum_probs=51.5
Q ss_pred EEEEEEEEEeeceEEE-EEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeec
Q 000227 1471 IVIGQIKRVESYGLFI-TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1826)
Q Consensus 1471 iv~G~V~~v~~~GvFV-~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~ 1540 (1826)
.+.|+|+.+.+.+.|- .|++ +..=+||+|- ++..-.-..-+||.|++.+--.|..++||..-.|+
T Consensus 8 e~~G~V~e~Lp~~~frV~Len-G~~vla~isG----KmR~~rIrIl~GD~V~VE~spYDltkGRIiyR~~~ 73 (87)
T PRK12442 8 ELDGIVDEVLPDSRFRVTLEN-GVEVGAYASG----RMRKHRIRILAGDRVTLELSPYDLTKGRINFRHKD 73 (87)
T ss_pred EEEEEEEEECCCCEEEEEeCC-CCEEEEEecc----ceeeeeEEecCCCEEEEEECcccCCceeEEEEecC
Confidence 4789999999988875 7876 7888999864 22222224679999999999999999999987764
No 374
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=83.15 E-value=40 Score=40.60 Aligned_cols=145 Identities=16% Similarity=0.139 Sum_probs=114.6
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc----chhhhHHH----HHHHHHHHHH
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINI----REENEKLN----IWVAYFNLEN 1736 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~----re~~e~~n----iW~a~l~lE~ 1736 (1826)
-+..--...||+|.|+.-|+.--.-|+.....|++|++++|-.=+..-|+.-+. .|.++++- -|.---.|-+
T Consensus 85 mGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s 164 (504)
T KOG0624|consen 85 MGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS 164 (504)
T ss_pred hcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence 345556789999999999999999999999999999999999888888775442 23444552 3666666666
Q ss_pred HcCCCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1737 EYGNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1737 ~~G~~~~e~~~~vf~~a~~~~~-~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
.+|+-+..++.......++.++ ...+|..-++.|+..|+..+|..=.+.+-|.-..+.......+++|++-|+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd 238 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD 238 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh
Confidence 6754477888888888887665 567788888889999999999888888888878888888888888877664
No 375
>PF08292 RNA_pol_Rbc25: RNA polymerase III subunit Rpc25; InterPro: IPR013238 Rpc25 is a strongly conserved subunit of RNA polymerase III and has homology to Rpa43 in RNA polymerase I, Rpb7 in RNA polymerase II and the archaeal RpoE subunit. Rpc25 is required for transcription initiation and is not essential for the elongating properties of RNA polymerase III [].; PDB: 2CKZ_D 3AYH_B.
Probab=82.99 E-value=3.4 Score=43.04 Aligned_cols=58 Identities=24% Similarity=0.298 Sum_probs=41.7
Q ss_pred CCcEEEEEEEEEecCcEEEEeCCCe-EEeecCCCcccc-ccc------------CCCCCcCCCCEEEEEEEEE
Q 000227 498 PGMVVKGKVIAVDSFGAIVQFPGGV-KALCPLPHMSEF-EIV------------KPGKKFKVGAELVFRVLGV 556 (1826)
Q Consensus 498 ~G~iv~g~V~~v~~~G~~V~i~~~v-~G~Vp~~hlsd~-~l~------------~p~~~fkvG~~Vk~rVL~v 556 (1826)
+|+++.|+|++-+..|+.|+++ .+ +-+||...|.+- ... .-+--|..|++|++||..+
T Consensus 3 ~gEvl~g~I~~~~~~Gi~vslg-FFddI~IP~~~L~~ps~fd~~~~~W~W~~~~~~~l~~d~ge~IRFRV~~~ 74 (122)
T PF08292_consen 3 VGEVLTGKIKSSTAEGIRVSLG-FFDDIFIPPSLLPEPSRFDEEEQAWVWEYDEEQELFFDIGEEIRFRVESE 74 (122)
T ss_dssp TT-EEEEEEEEEETTEEEEEEC-CEEEEEEECCCC-TTEEEECCCTEEEEEESSSEEEEE-TT-EEEEEEEEE
T ss_pred CCCEEEEEEEecCCCcEEEEec-ccccEEECHHHCCCCCccCccCCEEEEECCCCceeEccCCCEEEEEEeEE
Confidence 6999999999999999999996 54 678999888632 111 1122358999999999988
No 376
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=82.80 E-value=0.67 Score=60.16 Aligned_cols=28 Identities=7% Similarity=0.079 Sum_probs=13.4
Q ss_pred EEEEEEEeCCEEEEEECCCceEEEEccccCC
Q 000227 1168 TGYVYKVDNEWALLTISRHLKAQLFILDSAY 1198 (1826)
Q Consensus 1168 ~g~V~~v~~~~l~V~i~~~~~g~l~~~~~s~ 1198 (1826)
+|.--....+++.|- ...|.|+..+.+.
T Consensus 1105 Tc~afs~~~~hL~vG---~~~Geik~~nv~s 1132 (1516)
T KOG1832|consen 1105 TCIAFSGGTNHLAVG---SHAGEIKIFNVSS 1132 (1516)
T ss_pred eeEEeecCCceEEee---eccceEEEEEccC
Confidence 333334455555553 2345555555443
No 377
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.21 E-value=4.5 Score=50.16 Aligned_cols=116 Identities=17% Similarity=0.161 Sum_probs=80.0
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhh--------HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 000227 1684 NSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENE--------KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1755 (1826)
Q Consensus 1684 ~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e--------~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~ 1755 (1826)
+|+.--+.-..|++-.|+..+|-+.+-+. +.-+++. ++-.|.-+==+-...| .+.....+|+.|+|
T Consensus 238 ~s~~~l~LKsq~eY~~gn~~kA~KlL~~s----ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~--~y~~~~~~F~kAL~ 311 (696)
T KOG2471|consen 238 DSSMALLLKSQLEYAHGNHPKAMKLLLVS----NIHKEAGGTITPQLSSCIFNNNLGCIHYQLG--CYQASSVLFLKALR 311 (696)
T ss_pred CCcHHHHHHHHHHHHhcchHHHHHHHHhc----ccccccCccccchhhhheeecCcceEeeehh--hHHHHHHHHHHHHH
Confidence 55555555678888899999999998876 2222222 1222322111112345 56778889999996
Q ss_pred -cC------------------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 000227 1756 -YC------------------DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHF 1805 (1826)
Q Consensus 1756 -~~------------------~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~ 1805 (1826)
++ ....+...+.-.|..+|+.-.|.+.|.++++-|..++.+|++.|++++
T Consensus 312 N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 312 NSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 11 133444445556788999999999999999999889999999999975
No 378
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=81.02 E-value=2.4 Score=33.94 Aligned_cols=27 Identities=15% Similarity=0.055 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000227 1763 HLALLGLYERTEQNKLADELLYKMIKK 1789 (1826)
Q Consensus 1763 ~~~~~~i~~~~~~~~~a~~~~~~~~kk 1789 (1826)
|..++.+|.+.|++++|.++|++++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 778999999999999999999997643
No 379
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=80.78 E-value=5.8 Score=37.37 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=53.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc-cchh-hhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 000227 1683 PNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN-IREE-NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1755 (1826)
Q Consensus 1683 p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~-~re~-~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~ 1755 (1826)
|+-..++...+....++++.++|...+++|++... ..+. ......|..+-.+-...| +.+.|.+.|++|++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG--DYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHh
Confidence 44456777788888999999999999999997631 1212 223566777788888889 88999999999984
No 380
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=80.72 E-value=6.5 Score=36.52 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=47.6
Q ss_pred EEEEEEEEEeeceEEE-EEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEE
Q 000227 1471 IVIGQIKRVESYGLFI-TIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISL 1536 (1826)
Q Consensus 1471 iv~G~V~~v~~~GvFV-~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~L 1536 (1826)
.+.|.|+...+.|.|- .|++ +..=+||+|- ++..-.-...+||.|.+.+-..|.+++||..
T Consensus 6 e~~G~V~e~L~~~~f~V~l~n-g~~vla~i~G----Kmr~~rI~I~~GD~V~Ve~spyd~tkgrIi~ 67 (68)
T TIGR00008 6 EMEGKVTESLPNAMFRVELEN-GHEVLAHISG----KIRMHYIRILPGDKVKVELSPYDLTRGRITY 67 (68)
T ss_pred EEEEEEEEECCCCEEEEEECC-CCEEEEEecC----cchhccEEECCCCEEEEEECcccCCcEeEEe
Confidence 4789999999988875 7776 8999999974 2221223468999999999999999999853
No 381
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=80.49 E-value=18 Score=46.94 Aligned_cols=129 Identities=17% Similarity=0.185 Sum_probs=91.3
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcc---cchhhhHHHHHHHHHHHH-HHcCCCC-HHHHH
Q 000227 1673 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN---IREENEKLNIWVAYFNLE-NEYGNPP-EEAVV 1747 (1826)
Q Consensus 1673 ~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~---~re~~e~~niW~a~l~lE-~~~G~~~-~e~~~ 1747 (1826)
+.--++++..|+.-.-||.|+-=+.-+++...|-+|++.-.++++ ..+..|..-. +-|-|.+ ..-| . .+..+
T Consensus 130 ~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~-~Ly~n~i~~E~g--~~q~ale 206 (700)
T KOG1156|consen 130 ETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSEL-LLYQNQILIEAG--SLQKALE 206 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHH-HHHHHHHHHHcc--cHHHHHH
Confidence 444567788999999999999999999999999999999988774 2333332222 2222222 2334 2 12222
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 000227 1748 KVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFH 1804 (1826)
Q Consensus 1748 ~vf~~a~~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~ 1804 (1826)
.+.+.--+..|....-...+.++.+.+++++|..+|...+.++|.+..-+..+-..+
T Consensus 207 ~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 207 HLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKAL 263 (700)
T ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHH
Confidence 233222244567777788899999999999999999999999999888777776665
No 382
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=80.19 E-value=16 Score=50.52 Aligned_cols=126 Identities=18% Similarity=0.256 Sum_probs=86.1
Q ss_pred HHHHHHHHHhC------CCchhHHHHHHHHHHhc----CC-HHHHHHHHHHHHhhccc----chhhhH-HHHHHHHHHHH
Q 000227 1672 PDEFERLVRSS------PNSSFVWIKYMAFMLSM----AD-VEKARSIAERALQTINI----REENEK-LNIWVAYFNLE 1735 (1826)
Q Consensus 1672 ~~~fer~l~~~------p~ss~lWi~y~~f~l~~----~e-i~kAR~i~erAl~~i~~----re~~e~-~niW~a~l~lE 1735 (1826)
...||+.+... -+--..|++|+.+-... ++ ..-.|..++|++..+.. +. ..+ +++|+-|.-.|
T Consensus 14 ~~n~eq~li~el~~~~~~DPl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~n-D~Rfl~~~~~~~~~e 92 (974)
T KOG1166|consen 14 PLNYEQRLIYELESYAGNDPLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRN-DPRFLILWCSLELRE 92 (974)
T ss_pred HHHHHHHHHHHHHhhcCCCchhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccc-cHHHHHHHHhHHHHH
Confidence 44555554332 34567999999998863 34 78899999999877642 33 334 67888733222
Q ss_pred HHcCCCCHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC-CHHHHHHHHHHH
Q 000227 1736 NEYGNPPEEAVVKVFQRALQY---CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVIIELLSFH 1804 (1826)
Q Consensus 1736 ~~~G~~~~e~~~~vf~~a~~~---~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~-~~~~w~~~~~~~ 1804 (1826)
. ...++++|..+-+. ....-.|..|+.+|++.+.+.+|.++|+.++++... -..+=.+|..|+
T Consensus 93 ~------~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~ 159 (974)
T KOG1166|consen 93 E------LQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQ 159 (974)
T ss_pred H------HhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 2 24466777766543 246677999999999999999999999999976632 355555555554
No 383
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=80.03 E-value=51 Score=35.81 Aligned_cols=136 Identities=18% Similarity=0.126 Sum_probs=99.2
Q ss_pred cCCCCCHHHHHHHHH--hCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHH-HHHHcCCCC
Q 000227 1666 KDAPRTPDEFERLVR--SSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN-LENEYGNPP 1742 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~--~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~-lE~~~G~~~ 1742 (1826)
...+.....+++.+. ..+.....|.....+....++.+.|-+.+..++...+.... .|..+.. .-...| .
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~ 145 (291)
T COG0457 73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL-----AEALLALGALYELG--D 145 (291)
T ss_pred ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch-----HHHHHHHHHHHHcC--C
Confidence 335555666677665 68889999999999999999999999999999764433211 1222222 445678 7
Q ss_pred HHHHHHHHHHHHhcCC----cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcc
Q 000227 1743 EEAVVKVFQRALQYCD----PKKVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVIIELLSFHFTSI 1808 (1826)
Q Consensus 1743 ~e~~~~vf~~a~~~~~----~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~-~~~~w~~~~~~~~~~~ 1808 (1826)
.+.+...|++|+...+ ....+......+...+.++.|...+.++++..+. ....|...+..+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 146 YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 7999999999987433 3444555555677889999999999999999988 6788888877776554
No 384
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=79.40 E-value=2.4 Score=33.68 Aligned_cols=32 Identities=16% Similarity=0.189 Sum_probs=26.0
Q ss_pred HHHHHhc-CCcHHHHHHHHHHHHHcCChHHHHH
Q 000227 1750 FQRALQY-CDPKKVHLALLGLYERTEQNKLADE 1781 (1826)
Q Consensus 1750 f~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~ 1781 (1826)
|++|++. |+....|..++.+|.+.|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 7888854 5678889999999988899888864
No 385
>PF10246 MRP-S35: Mitochondrial ribosomal protein MRP-S35; InterPro: IPR019375 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of short mitochondrial ribosomal proteins, less than 200 amino acids long. MRP-S35 was proposed as a more appropriate name to this group of proteins [].
Probab=77.85 E-value=7.5 Score=38.65 Aligned_cols=54 Identities=13% Similarity=0.082 Sum_probs=47.1
Q ss_pred CCCCEEEEEEEEEEccEEEEEecCCCceEEEEecccccccCCCcccccCCCEEEEEEEeec
Q 000227 969 GVHQTVNAIVEIVKENYLVLSLPEYNHSIGYASVSDYNTQKFPQKQFLNGQSVIATVMALP 1029 (1826)
Q Consensus 969 ~~G~~v~g~V~~i~~~~v~vsl~~~~~~~g~~~~~~~n~~~~~~~~f~vGq~v~a~V~~~~ 1029 (1826)
..|-.|.|.|.++-++-++++| ++++.++++....| .+.|..|..|..++...+
T Consensus 22 ~~gk~V~G~I~hvv~ddLYIDf--G~KFhcVc~rp~~~-----~~~y~~G~rV~lrLkdlE 75 (104)
T PF10246_consen 22 PEGKIVIGKIFHVVDDDLYIDF--GGKFHCVCKRPAVN-----GEKYVRGSRVRLRLKDLE 75 (104)
T ss_pred ccCCEEEEEEEEEecCceEEEe--CCceeEEEeccccc-----ccccccCCEEEEEECCHh
Confidence 3688999999999999999999 89999999876654 467999999999988865
No 386
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=77.76 E-value=10 Score=46.45 Aligned_cols=88 Identities=20% Similarity=0.223 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCChHHHHH
Q 000227 1702 VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADE 1781 (1826)
Q Consensus 1702 i~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~~~kv~~~~~~i~~~~~~~~~a~~ 1781 (1826)
=+||.+.+|.+|+.-| .-+-.-++...|=..-| ..+-+.+++++++...+...+|.++++|+.-.+.+++|.+
T Consensus 420 rEKAKkf~ek~L~~~P-----~Y~~AV~~~AEL~~~Eg--~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 420 REKAKKFAEKSLKINP-----IYTPAVNLIAELCQVEG--PTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred HHHHHHHHHhhhccCC-----ccHHHHHHHHHHHHhhC--ccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHH
Confidence 4677777777774322 11223444455555556 5567889999999777778899999999999999999999
Q ss_pred HHHHHHHHcCCCHHH
Q 000227 1782 LLYKMIKKFKHSCKV 1796 (1826)
Q Consensus 1782 ~~~~~~kk~~~~~~~ 1796 (1826)
.|..+++.-|++.+.
T Consensus 493 ~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 493 YYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHhcCccchHH
Confidence 999999999876554
No 387
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=77.34 E-value=10 Score=45.62 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-ccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-C------C
Q 000227 1687 FVWIKYMAFMLSMADVEKARSIAERALQTI-NIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY-C------D 1758 (1826)
Q Consensus 1687 ~lWi~y~~f~l~~~ei~kAR~i~erAl~~i-~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~-~------~ 1758 (1826)
.+.-+.+......++.++|-+.+.+|...- ......+--+.|....++-... +.+.|...|++|++. . .
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~---~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG---DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 456666777777888888888888885422 1122222223444444443333 457888899999853 1 2
Q ss_pred cHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHcCCC------HHHHHHHHHHHHhcc
Q 000227 1759 PKKVHLALLGLYERT-EQNKLADELLYKMIKKFKHS------CKVIIELLSFHFTSI 1808 (1826)
Q Consensus 1759 ~~kv~~~~~~i~~~~-~~~~~a~~~~~~~~kk~~~~------~~~w~~~~~~~~~~~ 1808 (1826)
.-+++..++.+|++. +++++|.+.|++++.-|... ..+....|.++.+.+
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 467899999999998 99999999999999998322 566777777776655
No 388
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.27 E-value=45 Score=38.95 Aligned_cols=131 Identities=13% Similarity=0.028 Sum_probs=89.4
Q ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 000227 1673 DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQR 1752 (1826)
Q Consensus 1673 ~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~ 1752 (1826)
.=+.++-..-|+|-.+=..++=+.=-.+..+.|-+++++-+.--|.. .-+...-+-+=...|.. .+..+.+-+-
T Consensus 73 ~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~-----~v~~KRKlAilka~GK~-l~aIk~ln~Y 146 (289)
T KOG3060|consen 73 KCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTD-----TVIRKRKLAILKAQGKN-LEAIKELNEY 146 (289)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcch-----hHHHHHHHHHHHHcCCc-HHHHHHHHHH
Confidence 33445555558887776666555556777888888888886533222 22455555555667742 3333333333
Q ss_pred HHhcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1753 ALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1753 a~~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
.=.|+.....|..++.||...|.|++|-=.||.++=--|.++-.+.+||..++.+|.
T Consensus 147 L~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 147 LDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 337788888888888888888888888888888888888888888888888777664
No 389
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.75 E-value=27 Score=38.84 Aligned_cols=97 Identities=20% Similarity=0.148 Sum_probs=57.7
Q ss_pred CHHHHHHHHHhCCCchhHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCC
Q 000227 1671 TPDEFERLVRSSPNSSFVWIKYMAFMLSMAD----------VEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1740 (1826)
Q Consensus 1671 s~~~fer~l~~~p~ss~lWi~y~~f~l~~~e----------i~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~ 1740 (1826)
++..+|..+..||+....|.++.--.+++.. |+.|-+-++.||. |++.....-|++=.||..+=....
T Consensus 10 ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A~l~~- 87 (186)
T PF06552_consen 10 ARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLAFLTP- 87 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhhcC-
Confidence 4778889899999999988888776666543 5566666666764 555554455555566666555455
Q ss_pred CCHH-------HHHHHHHHHHhcCCcHHHHHHHHHHH
Q 000227 1741 PPEE-------AVVKVFQRALQYCDPKKVHLALLGLY 1770 (1826)
Q Consensus 1741 ~~~e-------~~~~vf~~a~~~~~~~kv~~~~~~i~ 1770 (1826)
+.. .|..-|++|++..|...+|.+.+...
T Consensus 88 -d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 88 -DTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 443 44445555555667777777766654
No 390
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=76.54 E-value=20 Score=42.86 Aligned_cols=96 Identities=10% Similarity=-0.015 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc------CCCHHH
Q 000227 1724 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKF------KHSCKV 1796 (1826)
Q Consensus 1724 ~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~-~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~------~~~~~~ 1796 (1826)
...+-.+++......| ..+.+...+++.++.. -...+|.++...|.+.|+...|...|+++-+.+ ...+.+
T Consensus 152 ~~~~l~~lae~~~~~~--~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 152 FIKALTKLAEALIACG--RADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 4457888888888999 8899999999999664 478999999999999999999999999997755 226899
Q ss_pred HHHHHHHHHhccccccCCccccCCC
Q 000227 1797 IIELLSFHFTSILSIFGHANFVSPG 1821 (1826)
Q Consensus 1797 w~~~~~~~~~~~~~~~~~~~~~~~~ 1821 (1826)
|..|-+..-...+.+-...-++.-+
T Consensus 230 ~~~y~~~~~~~~~~~~~~~~~~~~~ 254 (280)
T COG3629 230 RALYEEILRQDPLDNKVSVVTKEKL 254 (280)
T ss_pred HHHHHHHhcccccccccceeccccc
Confidence 9999998555444444443333333
No 391
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=76.36 E-value=9.7 Score=45.30 Aligned_cols=67 Identities=12% Similarity=-0.012 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1743 EEAVVKVFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1743 ~e~~~~vf~~a~-~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
.+.+..-.+.-+ +.+...+=|..++.+|.+.|+++.|...|.++++.-|.++.+|..|++.++-+.+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~ 205 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG 205 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence 455555566666 4566888899999999999999999999999999999999999999999876654
No 392
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=76.03 E-value=19 Score=44.61 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=71.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCcHHHHHHH
Q 000227 1688 VWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY-CDPKKVHLAL 1766 (1826)
Q Consensus 1688 lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~-~~~~kv~~~~ 1766 (1826)
+.+.-|.-++++++...|-+-+.++|..=+... -.-++==.||+ ..| +++.|+..|++|++. +..+.+...+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~-KALyRrG~A~l----~~~--e~~~A~~df~ka~k~~P~Nka~~~el 331 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNV-KALYRRGQALL----ALG--EYDLARDDFQKALKLEPSNKAARAEL 331 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch-hHHHHHHHHHH----hhc--cHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 456779999999999999999999987543211 00001123333 357 789999999999976 4578888888
Q ss_pred HHHHHHcCCh-HHHHHHHHHHHHHcC
Q 000227 1767 LGLYERTEQN-KLADELLYKMIKKFK 1791 (1826)
Q Consensus 1767 ~~i~~~~~~~-~~a~~~~~~~~kk~~ 1791 (1826)
+..-.+...+ ++.+++|.+|+.+++
T Consensus 332 ~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 332 IKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 8876655544 566999999999996
No 393
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=75.98 E-value=48 Score=40.70 Aligned_cols=139 Identities=18% Similarity=0.179 Sum_probs=97.6
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHH-hcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHH
Q 000227 1656 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFML-SMADVEKARSIAERALQTINIREENEKLNIWVAYFNL 1734 (1826)
Q Consensus 1656 ~~~~~~~~~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l-~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~l 1734 (1826)
+.+++..++.++--..+.-||-. ..+|.--.+-++=.=.+- ++|.-+.||..++||-..-+.= -|-+..-|
T Consensus 124 lLeAQaal~eG~~~~Ar~kfeAM-l~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l-------~WA~~AtL 195 (531)
T COG3898 124 LLEAQAALLEGDYEDARKKFEAM-LDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQL-------PWAARATL 195 (531)
T ss_pred HHHHHHHHhcCchHHHHHHHHHH-hcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCC-------chHHHHHH
Confidence 45566677788877788899877 568888887777544444 4789999999999997655432 27777777
Q ss_pred HHHcCCCCHHHHHHHHHHHHhc------------------------------------------CCcHHHHHHHHHHHHH
Q 000227 1735 ENEYGNPPEEAVVKVFQRALQY------------------------------------------CDPKKVHLALLGLYER 1772 (1826)
Q Consensus 1735 E~~~G~~~~e~~~~vf~~a~~~------------------------------------------~~~~kv~~~~~~i~~~ 1772 (1826)
|+....-+.+.+.++.+...+. +|-.---...+..|.+
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~ 275 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFR 275 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence 7654211777777766655430 1111122334556778
Q ss_pred cCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 000227 1773 TEQNKLADELLYKMIKKFKHSCKVIIELLSF 1803 (1826)
Q Consensus 1773 ~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~ 1803 (1826)
.|+.-++-.++|.+-|.+|+ +.+|..|...
T Consensus 276 d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a 305 (531)
T COG3898 276 DGNLRKGSKILETAWKAEPH-PDIALLYVRA 305 (531)
T ss_pred ccchhhhhhHHHHHHhcCCC-hHHHHHHHHh
Confidence 89999999999999999995 9999999765
No 394
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=75.48 E-value=6.6 Score=30.59 Aligned_cols=32 Identities=13% Similarity=-0.015 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 000227 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKH 1792 (1826)
Q Consensus 1761 kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~ 1792 (1826)
++|..++.+|...+++++|.+.|+++++..|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57999999999999999999999999998774
No 395
>cd05700 S1_Rrp5_repeat_hs9 S1_Rrp5_repeat_hs9: Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in Saccharomyces cerevisiae Rrp5 and 14 S1 repeats in Homo sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes Homo sapiens S1 repeat 9 (hs9). Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=74.64 E-value=13 Score=33.08 Aligned_cols=62 Identities=24% Similarity=0.277 Sum_probs=45.1
Q ss_pred CceEEEEEEEEecCeEEEEeCCCeEE---EEecccccCCCCCCCccccCCCCCEEEEEEEEEeCCccEEEEee
Q 000227 322 GMMVSTRVQSILENGVMLSFLTYFTG---TVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVDPTSRAVGLTL 391 (1826)
Q Consensus 322 G~~V~~~V~~V~~~Gl~v~~~~~~~G---~v~~~hl~~~~~~~~~~~~y~~G~~v~arVl~v~~~~k~v~LSl 391 (1826)
|+.+.-.|..++++|-..--.+.+.| .....|... ....+|++++|-|+-+|--+-.+.+||
T Consensus 1 G~~L~LvV~~~~edgsv~fs~g~v~g~tv~AtryH~~g--------~nl~pGqK~kaviLhvD~l~~~VhVSl 65 (65)
T cd05700 1 GDQLKLVVQDVTEDGSVMFSGGQVSGLTVLASRYHKEG--------VNVTPGCKLKAVILHVDFVKSQVHVSL 65 (65)
T ss_pred CceEEEEEeeeccCCcEEEecCCcCCcEEEEEEEEecc--------eecCCCceeEEEEEEEeeEEeEEEEeC
Confidence 67788889998888865544444443 344566543 267899999999999998777777775
No 396
>PRK04841 transcriptional regulator MalT; Provisional
Probab=74.51 E-value=59 Score=45.91 Aligned_cols=122 Identities=11% Similarity=0.009 Sum_probs=75.3
Q ss_pred ccCCCCCHHHHHHHHHhCCCchh-----HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhH---HHHHHHHHHHHH
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSF-----VWIKYMAFMLSMADVEKARSIAERALQTINIREENEK---LNIWVAYFNLEN 1736 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~-----lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~---~niW~a~l~lE~ 1736 (1826)
.++..++...+++++...|.... .+...+..++..|+++.|+..+++|+.... +.... ...+..+..+..
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~--~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMAR--QHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh--hhcchHHHHHHHHHHHHHHH
Confidence 45566667777777764444321 122233345678899999999999976432 11111 122222333445
Q ss_pred HcCCCCHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHc
Q 000227 1737 EYGNPPEEAVVKVFQRALQYCDP---------KKVHLALLGLYERTEQNKLADELLYKMIKKF 1790 (1826)
Q Consensus 1737 ~~G~~~~e~~~~vf~~a~~~~~~---------~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~ 1790 (1826)
..| +.+.|+..+++|++.... .-++..++.++...|+++.|++.+..++...
T Consensus 543 ~~G--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 603 (903)
T PRK04841 543 AQG--FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL 603 (903)
T ss_pred HCC--CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence 578 778888888888864221 2234556677778899999999988887754
No 397
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=74.25 E-value=21 Score=45.08 Aligned_cols=49 Identities=16% Similarity=0.159 Sum_probs=31.2
Q ss_pred cCCCCCHHHHHHHHHhCCCchh---HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000227 1666 KDAPRTPDEFERLVRSSPNSSF---VWIKYMAFMLSMADVEKARSIAERALQ 1714 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~ss~---lWi~y~~f~l~~~ei~kAR~i~erAl~ 1714 (1826)
++..++.+.|+++|..+|++.. .|.+-+..+..+|++++|.+.++||++
T Consensus 89 GryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 89 GRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455566666666666666653 366666666666666666666666654
No 398
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=74.11 E-value=21 Score=38.09 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 000227 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL 1754 (1826)
Q Consensus 1687 ~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~ 1754 (1826)
.++.+++...+..++.++|..++++++..-|++|. +|..++..-...| +...|..+|++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~-----~~~~lm~~~~~~g--~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEE-----AYRLLMRALAAQG--RRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH-----HHHHHHHHHHHTT---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH-----HHHHHHHHHHHCc--CHHHHHHHHHHHH
Confidence 45555666666677777777777777766666654 6777777777777 5566666666654
No 399
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=74.03 E-value=6.5 Score=30.52 Aligned_cols=31 Identities=19% Similarity=0.118 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 000227 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFK 1791 (1826)
Q Consensus 1761 kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~ 1791 (1826)
++|..++.+|.+.|++++|.+.|+++++-.|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5789999999999999999999999988665
No 400
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.02 E-value=21 Score=42.13 Aligned_cols=95 Identities=16% Similarity=0.144 Sum_probs=64.2
Q ss_pred hcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hcCCc---HHHHHHHHHHHHHc
Q 000227 1698 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL-QYCDP---KKVHLALLGLYERT 1773 (1826)
Q Consensus 1698 ~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~-~~~~~---~kv~~~~~~i~~~~ 1773 (1826)
..+++..|..-+..=++.-|...-...-+-|+-=.. ...| +++.|..+|-++. .|+++ ....++++.+..+.
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~--y~qg--~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESL--YAQG--DYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHH--Hhcc--cchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 344455555555544443332222222345654222 2346 7789999999998 56654 56688999999999
Q ss_pred CChHHHHHHHHHHHHHcCCCHHH
Q 000227 1774 EQNKLADELLYKMIKKFKHSCKV 1796 (1826)
Q Consensus 1774 ~~~~~a~~~~~~~~kk~~~~~~~ 1796 (1826)
++.+.|+..|+..+++||....-
T Consensus 229 ~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 229 GNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred cCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999999999986543
No 401
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.70 E-value=66 Score=37.91 Aligned_cols=68 Identities=9% Similarity=-0.017 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1742 PEEAVVKVFQRALQ-YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1742 ~~e~~~~vf~~a~~-~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
....|-=+|++.++ +.+.+.+-+-++-.....++|++|..+.+.++.+.+..+..-+...-.-...|.
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 45667779999997 888999999999999999999999999999999998888888877666444443
No 402
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis]
Probab=73.12 E-value=4.6 Score=52.19 Aligned_cols=75 Identities=17% Similarity=0.140 Sum_probs=57.3
Q ss_pred CCCCCEEEEEEEEEecc--eEEEEeCCCeEEEEEccccCCCccCCCC-----ccCCCCcEEEEEEEEEeCCCCeEEEEEe
Q 000227 1376 LSPNMIVQGYVKNVTSK--GCFIMLSRKLDAKVLLSNLSDGYVESPE-----KEFPIGKLVAGRVLSVEPLSKRVEVTLK 1448 (1826)
Q Consensus 1376 l~~G~~v~G~V~~v~~~--GvFV~l~~~v~g~v~iselsd~~v~~~~-----~~f~vGq~V~~kVl~vd~e~~rI~lSlk 1448 (1826)
..+|.++.|+|++|.+. .+||++|..-.||+|++++.+ |...+. ..++.||.+-+.|+.-...++-..||..
T Consensus 35 ~~~gniy~grv~~i~p~~~aafvdig~~r~gfl~~~~~~~-~~~~~~~~~i~~~lr~~~~~~Vqv~ke~~G~Kga~lT~~ 113 (487)
T COG1530 35 QIVGNIYKGRVTRVLPSLEAAFVDIGLERNGFLHLSEIVP-YFRAVLEEKIKVRLRGGQATLVQVVKEPRGTKGARLTTD 113 (487)
T ss_pred eeecCceEEEecccCccchhheeeccCCccceEEecccch-hhhhcccccceeeecCCceEEEEEEeecCccccccceeE
Confidence 45899999999999775 899999999999999999999 444333 4788899888888765544444455544
Q ss_pred ccc
Q 000227 1449 TSD 1451 (1826)
Q Consensus 1449 ~s~ 1451 (1826)
-+.
T Consensus 114 Is~ 116 (487)
T COG1530 114 ISL 116 (487)
T ss_pred Eee
Confidence 433
No 403
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=72.33 E-value=3.1 Score=55.60 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000227 1669 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQ 1714 (1826)
Q Consensus 1669 p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~ 1714 (1826)
-.+-+.=.++|+=+-+...||+= +.-+ -.|=+-|+.++.+.+.
T Consensus 148 ~~~d~I~Q~~LLPsvkDP~LW~V--KC~i-G~Er~~a~~LMrK~i~ 190 (1024)
T KOG1999|consen 148 EDSDDIPQQALLPSVKDPNLWIV--KCKI-GREREVAFCLMRKFIE 190 (1024)
T ss_pred hcccchhHHhhCCCCCCCCeeEE--Eecc-ccHHHHHHHHHHHHHh
Confidence 34444566888877788889971 1110 0133445666666654
No 404
>COG1530 CafA Ribonucleases G and E [Translation, ribosomal structure and biogenesis]
Probab=72.30 E-value=4.5 Score=52.31 Aligned_cols=72 Identities=25% Similarity=0.373 Sum_probs=57.2
Q ss_pred ccccCCCCEEEEEEEEEeec--eEEEEEecCceEEEEEccccCcccccC-----ccccCCCCCEEEEEEEEEeCCCCeEE
Q 000227 1463 LSNLHVGDIVIGQIKRVESY--GLFITIENTNLVGLCHVSELSEDHVDN-----IETIYRAGEKVKVKILKVDKEKRRIS 1535 (1826)
Q Consensus 1463 ~~~~~~G~iv~G~V~~v~~~--GvFV~l~~~~v~Gl~h~sels~~~~~~-----~~~~~~~Gd~Vk~kVl~id~e~~rI~ 1535 (1826)
.....+|.+|.|+|++|.+. .+||+|+. .-.|++|.+++.+ +... ++..++.||.+-+.|++-....+--.
T Consensus 32 ~~~~~~gniy~grv~~i~p~~~aafvdig~-~r~gfl~~~~~~~-~~~~~~~~~i~~~lr~~~~~~Vqv~ke~~G~Kga~ 109 (487)
T COG1530 32 AKEQIVGNIYKGRVTRVLPSLEAAFVDIGL-ERNGFLHLSEIVP-YFRAVLEEKIKVRLRGGQATLVQVVKEPRGTKGAR 109 (487)
T ss_pred CcEeeecCceEEEecccCccchhheeeccC-CccceEEecccch-hhhhcccccceeeecCCceEEEEEEeecCcccccc
Confidence 44567899999999999986 89999986 8999999999998 3322 34689999999999988765444333
Q ss_pred E
Q 000227 1536 L 1536 (1826)
Q Consensus 1536 L 1536 (1826)
|
T Consensus 110 l 110 (487)
T COG1530 110 L 110 (487)
T ss_pred c
Confidence 3
No 405
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=71.32 E-value=4.4 Score=30.53 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000227 1762 VHLALLGLYERTEQNKLADELLYKMIKK 1789 (1826)
Q Consensus 1762 v~~~~~~i~~~~~~~~~a~~~~~~~~kk 1789 (1826)
.|..+++.|.+.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4889999999999999999999999753
No 406
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.12 E-value=26 Score=41.83 Aligned_cols=110 Identities=13% Similarity=0.077 Sum_probs=82.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hcCCcHHHHHHHHHH
Q 000227 1691 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL-QYCDPKKVHLALLGL 1769 (1826)
Q Consensus 1691 ~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~-~~~~~~kv~~~~~~i 1769 (1826)
+..+..+++|-.-+|.+-++.+|+.-+.-+ -+.-+-+.-+....| ++|-.+|..-+ .++-..++-.-++.|
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~d------TfllLskvY~ridQP--~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPD------TFLLLSKVYQRIDQP--ERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchh------HHHHHHHHHHHhccH--HHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 456788889999999999999987655433 344444555566744 99999999999 567788888889999
Q ss_pred HHHcCChHHHHHHHHHHHHHcCC----------------CHHHHHHHHHHHHhcc
Q 000227 1770 YERTEQNKLADELLYKMIKKFKH----------------SCKVIIELLSFHFTSI 1808 (1826)
Q Consensus 1770 ~~~~~~~~~a~~~~~~~~kk~~~----------------~~~~w~~~~~~~~~~~ 1808 (1826)
++..++++.|.++|+..+|..|. .+.+=++|-+-.+..|
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence 99999999999999999987653 4555555555555444
No 407
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=70.26 E-value=57 Score=42.75 Aligned_cols=51 Identities=10% Similarity=-0.047 Sum_probs=41.7
Q ss_pred cHHHHHHH--HHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1759 PKKVHLAL--LGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1759 ~~kv~~~~--~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
...+|..| ++.|...|++++|.++.++++..-|+.+.+++.-|++|-..|+
T Consensus 191 ~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 191 STLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 34466444 8888889999999999999999999999999999988877665
No 408
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=70.15 E-value=58 Score=44.03 Aligned_cols=133 Identities=15% Similarity=0.250 Sum_probs=94.7
Q ss_pred cCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHH
Q 000227 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~ 1745 (1826)
.+.-++-++.++++..+||++..-+--+=-..++|-.+.|-.++| |+.-.... +...+.+... .=...| ..+.
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~~~~~-D~~tLq~l~~---~y~d~~--~~d~ 95 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLE-ALYGLKGT-DDLTLQFLQN---VYRDLG--KLDE 95 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhccCCCC-chHHHHHHHH---HHHHHh--hhhH
Confidence 345566788999999999999876555555668888899996665 44433333 3344444333 335566 5588
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 000227 1746 VVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHF 1805 (1826)
Q Consensus 1746 ~~~vf~~a~~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~ 1805 (1826)
+-.+|+||+|..|..+.-+++..-|.|-+.|.+-+++--++-|.||..+=.+=+.+..++
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence 999999999877778888888888888899988888888888899877544333344433
No 409
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=70.10 E-value=56 Score=34.50 Aligned_cols=131 Identities=19% Similarity=0.297 Sum_probs=78.8
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc------ccch---hhhHH
Q 000227 1655 EIRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI------NIRE---ENEKL 1725 (1826)
Q Consensus 1655 ~~~~~~~~~~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i------~~re---~~e~~ 1725 (1826)
.++++++..+++...|-....++.+.++|-+++-|+- =--+...+=+---++++.-=+.- |.+- =..+.
T Consensus 5 kLmeAK~~ildG~V~qGveii~k~v~Ssni~E~NWvI--CNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~ 82 (161)
T PF09205_consen 5 KLMEAKERILDGDVKQGVEIIEKTVNSSNIKEYNWVI--CNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKR 82 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHH--HHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHT
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHcCcCCccccceee--eecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHh
Confidence 5788888899999999999999999999999999972 11111111111112222210000 0000 01112
Q ss_pred HHHHHHHHHH----HHcCCCCHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000227 1726 NIWVAYFNLE----NEYGNPPEEAVVKVFQRALQ-YCDPKKVHLALLGLYERTEQNKLADELLYKMIKK 1789 (1826)
Q Consensus 1726 niW~a~l~lE----~~~G~~~~e~~~~vf~~a~~-~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk 1789 (1826)
|..-.|++|- ..-| ..+.+.+++..... ......+..+++..|.+.|...+|-++..+++++
T Consensus 83 n~~se~vD~ALd~lv~~~--kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 83 NKLSEYVDLALDILVKQG--KKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp T---HHHHHHHHHHHHTT---HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHhc--cHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3334444433 3457 77999999999884 4467889999999999999999999999999876
No 410
>PF12854 PPR_1: PPR repeat
Probab=69.53 E-value=7.3 Score=30.90 Aligned_cols=30 Identities=20% Similarity=0.053 Sum_probs=27.0
Q ss_pred CCcHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 000227 1757 CDPKKVHLALLGLYERTEQNKLADELLYKM 1786 (1826)
Q Consensus 1757 ~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~ 1786 (1826)
.+..-.|..++.-|.+.|++++|.++|++|
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 456678999999999999999999999987
No 411
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=69.33 E-value=12 Score=51.97 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=15.6
Q ss_pred CCCCCHHHHHHHHHhCCCc
Q 000227 1667 DAPRTPDEFERLVRSSPNS 1685 (1826)
Q Consensus 1667 ~~p~s~~~fer~l~~~p~s 1685 (1826)
..|+|-++|..+|...+..
T Consensus 423 ~~P~s~eel~~lL~~~~~~ 441 (840)
T PF04147_consen 423 PCPSSHEELLELLDGYSPE 441 (840)
T ss_pred cCCCCHHHHHHHHhcCCHH
Confidence 3899999999999876543
No 412
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=68.63 E-value=39 Score=46.00 Aligned_cols=132 Identities=18% Similarity=0.162 Sum_probs=89.9
Q ss_pred CCCCHHHHHHHHHhCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCC
Q 000227 1668 APRTPDEFERLVRSSPNS-----SFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPP 1742 (1826)
Q Consensus 1668 ~p~s~~~fer~l~~~p~s-----s~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~ 1742 (1826)
.|....-|+=.+...-++ ..-|.+.-=++++.++.-.|-.=++-|+++- .-..|.|.++-.-=..-| -
T Consensus 539 ~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-----PkD~n~W~gLGeAY~~sG--r 611 (1238)
T KOG1127|consen 539 ESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-----PKDYNLWLGLGEAYPESG--R 611 (1238)
T ss_pred cccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-----chhHHHHHHHHHHHHhcC--c
Confidence 444444444444433332 3367777777777778877877778887543 334589999887777788 7
Q ss_pred HHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHh
Q 000227 1743 EEAVVKVFQRALQYCDPKK-VHLALLGLYERTEQNKLADELLYKMIKKFKHS-------CKVIIELLSFHFT 1806 (1826)
Q Consensus 1743 ~e~~~~vf~~a~~~~~~~k-v~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~-------~~~w~~~~~~~~~ 1806 (1826)
+..+-++|.+|.+.+|..+ .-..-+-++...|+|..|...++..+.++... ..+.++.+.-++-
T Consensus 612 y~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~ 683 (1238)
T KOG1127|consen 612 YSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAI 683 (1238)
T ss_pred eehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 7999999999998766433 33334446789999999999999999988543 4444555444433
No 413
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=68.35 E-value=38 Score=43.95 Aligned_cols=113 Identities=20% Similarity=0.161 Sum_probs=72.7
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000227 1672 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1750 (1826)
Q Consensus 1672 ~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~-i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf 1750 (1826)
...+++....-|||...-+..+.++.-.+++++|-+.+++|+.. ...++. .-+.+|=-..++- ..+ +.+.|...|
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql-~~l~~~El~w~~~-~~~--~w~~A~~~f 328 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQL-HHLCYFELAWCHM-FQH--DWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhH-HHHHHHHHHHHHH-HHc--hHHHHHHHH
Confidence 33445555566987666566667777899999999999999741 222221 1223333333322 245 789999999
Q ss_pred HHHHhcCCcHHHHHHHHH--HHHHcCCh-------HHHHHHHHHHHH
Q 000227 1751 QRALQYCDPKKVHLALLG--LYERTEQN-------KLADELLYKMIK 1788 (1826)
Q Consensus 1751 ~~a~~~~~~~kv~~~~~~--i~~~~~~~-------~~a~~~~~~~~k 1788 (1826)
.+.++.+.--+.+..|+. .|...++. ++|.++|.+.-.
T Consensus 329 ~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 329 LRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 999977664444444443 57788888 788888877643
No 414
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.97 E-value=45 Score=40.24 Aligned_cols=120 Identities=19% Similarity=0.264 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----------ccchhhhHH------------
Q 000227 1669 PRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI-----------NIREENEKL------------ 1725 (1826)
Q Consensus 1669 p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i-----------~~re~~e~~------------ 1725 (1826)
.++...|+-+...+--.+.+|+..+-...=+|.+..|..+++.|-++- .+..|.+.+
T Consensus 74 ~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~Ed 153 (557)
T KOG3785|consen 74 EEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLED 153 (557)
T ss_pred HHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHH
Confidence 334445555544444456788877776666778888999988884431 111111111
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCcH---HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCH
Q 000227 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK---KVHLALLGLYERTEQNKLADELLYKMIKKFKHSC 1794 (1826)
Q Consensus 1726 niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~~~---kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~ 1794 (1826)
.+-+|.++..... +..|.++|+|.++-++.. .||+.+ .|.+..-++-+.++....+..||.|+
T Consensus 154 qLSLAsvhYmR~H----YQeAIdvYkrvL~dn~ey~alNVy~AL--CyyKlDYydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 154 QLSLASVHYMRMH----YQEAIDVYKRVLQDNPEYIALNVYMAL--CYYKLDYYDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred HHhHHHHHHHHHH----HHHHHHHHHHHHhcChhhhhhHHHHHH--HHHhcchhhhHHHHHHHHHHhCCCcH
Confidence 2344444444432 366888999988877643 444443 46778889999999999999999874
No 415
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=66.46 E-value=43 Score=42.75 Aligned_cols=115 Identities=10% Similarity=0.175 Sum_probs=79.0
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHH
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e 1744 (1826)
.++.|.++..|..+|..+|++..++=+.+..++.++++..|-+=++.+++. ...+..-|+.-..-....- .++
T Consensus 371 ~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-----~p~~~kgy~RKg~al~~mk--~yd 443 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-----DPNFIKAYLRKGAALRAMK--EYD 443 (539)
T ss_pred ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----CchHHHHHHHHHHHHHHHH--HHH
Confidence 566899999999999999999999999999999999999988888888654 1223455665544444444 567
Q ss_pred HHHHHHHHHHhcCCcHHHHHH-HHHHHHHcCChHHHHHHHHHH
Q 000227 1745 AVVKVFQRALQYCDPKKVHLA-LLGLYERTEQNKLADELLYKM 1786 (1826)
Q Consensus 1745 ~~~~vf~~a~~~~~~~kv~~~-~~~i~~~~~~~~~a~~~~~~~ 1786 (1826)
.|.+.|+.|++..+...=++. +...+..........+++++.
T Consensus 444 kAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r~ 486 (539)
T KOG0548|consen 444 KALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRRA 486 (539)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHhh
Confidence 888899999988764433332 222333223344445555553
No 416
>PRK15331 chaperone protein SicA; Provisional
Probab=65.95 E-value=67 Score=35.38 Aligned_cols=93 Identities=3% Similarity=-0.101 Sum_probs=74.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc-CCcHHHHHHHHHH
Q 000227 1691 KYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY-CDPKKVHLALLGL 1769 (1826)
Q Consensus 1691 ~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~-~~~~kv~~~~~~i 1769 (1826)
+|+-...+.|.++.|+.++.--. ..++-+ -+-|+.+.--....+ .++.|...|-.|.-. .+.+..+.+.++.
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~-~~d~~n----~~Y~~GLaa~~Q~~k--~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLC-IYDFYN----PDYTMGLAAVCQLKK--QFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH-HhCcCc----HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 45556668999999999987664 333322 236999999999999 779999999999843 4556668889999
Q ss_pred HHHcCChHHHHHHHHHHHHHc
Q 000227 1770 YERTEQNKLADELLYKMIKKF 1790 (1826)
Q Consensus 1770 ~~~~~~~~~a~~~~~~~~kk~ 1790 (1826)
|...|+.+.|+..|+.++.+.
T Consensus 115 ~l~l~~~~~A~~~f~~a~~~~ 135 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNERT 135 (165)
T ss_pred HHHhCCHHHHHHHHHHHHhCc
Confidence 999999999999999999953
No 417
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=65.52 E-value=88 Score=38.86 Aligned_cols=62 Identities=16% Similarity=0.002 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 000227 1742 PEEAVVKVFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFH 1804 (1826)
Q Consensus 1742 ~~e~~~~vf~~a~-~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~ 1804 (1826)
..|.|+++++.++ +.|+--+.-...+.+..+.|+++.+..++++.++.|+ .+.+....+.|+
T Consensus 419 ~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~ 481 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIM 481 (564)
T ss_pred hHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHH
Confidence 4699999999999 5566778888999999999999999999999999999 588888888885
No 418
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=65.46 E-value=41 Score=45.80 Aligned_cols=131 Identities=12% Similarity=0.027 Sum_probs=95.3
Q ss_pred CCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000227 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1826)
Q Consensus 1667 ~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~ 1746 (1826)
+--+++.+|..++..+|++-.+|...|+-+.+.|-+..|-+++.||.. ++.. .+-.=..-.-+|...| .++-+
T Consensus 577 n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~-LrP~----s~y~~fk~A~~ecd~G--kYkea 649 (1238)
T KOG1127|consen 577 NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL-LRPL----SKYGRFKEAVMECDNG--KYKEA 649 (1238)
T ss_pred chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh-cCcH----hHHHHHHHHHHHHHhh--hHHHH
Confidence 356789999999999999999999999999999999999999999953 2211 1111222345889999 66777
Q ss_pred HHHHHHHHh--------cCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc--------CCCHHHHHHHHHHH
Q 000227 1747 VKVFQRALQ--------YCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF--------KHSCKVIIELLSFH 1804 (1826)
Q Consensus 1747 ~~vf~~a~~--------~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~--------~~~~~~w~~~~~~~ 1804 (1826)
-+.++..|+ .++-...|++++.-+.-.|=+.+|-..+++.+..| -.+.-+|+-.+..+
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac 723 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC 723 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH
Confidence 766666664 23567789999887766666666666666666655 22456788777654
No 419
>PRK04841 transcriptional regulator MalT; Provisional
Probab=65.14 E-value=80 Score=44.60 Aligned_cols=95 Identities=15% Similarity=0.026 Sum_probs=65.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC----c---HHHHHHHH
Q 000227 1695 FMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD----P---KKVHLALL 1767 (1826)
Q Consensus 1695 f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~----~---~kv~~~~~ 1767 (1826)
..+..++++.|+..+++|+...+..........+..+...-...| +.+.+...|++|++... . ...+..++
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G--~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG--ELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 345689999999999999875433221111122222233345689 78999999999985422 1 23455667
Q ss_pred HHHHHcCChHHHHHHHHHHHHHcC
Q 000227 1768 GLYERTEQNKLADELLYKMIKKFK 1791 (1826)
Q Consensus 1768 ~i~~~~~~~~~a~~~~~~~~kk~~ 1791 (1826)
.++...|+++.|++.+++++....
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~ 562 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIE 562 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHH
Confidence 789999999999999999988753
No 420
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=64.63 E-value=17 Score=38.85 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=49.2
Q ss_pred HcCCCCHHHHHHHHHHHH-hcCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHH
Q 000227 1737 EYGNPPEEAVVKVFQRAL-QYCD---PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV 1796 (1826)
Q Consensus 1737 ~~G~~~~e~~~~vf~~a~-~~~~---~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~ 1796 (1826)
.-| +++.|.+.|+... +|+- ..+.-+.++-.|.+.++++.|...|++.++.+|+++++
T Consensus 22 ~~~--~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 22 QKG--NYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HhC--CHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 457 7799999999988 5553 56778888888899999999999999999999988764
No 421
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=63.74 E-value=2.2e+02 Score=32.02 Aligned_cols=133 Identities=6% Similarity=0.087 Sum_probs=99.4
Q ss_pred ccCCCCCHHHHHHHHHhC-CCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCH
Q 000227 1665 EKDAPRTPDEFERLVRSS-PNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPE 1743 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~-p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~ 1743 (1826)
-++.-+.+.-|+.++.+- -+...+-+-.+.-++..++...|...+|.-.++-+.+..... -+.|..--...| .+
T Consensus 102 lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~---~Ll~aR~laa~g--~~ 176 (251)
T COG4700 102 LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG---HLLFARTLAAQG--KY 176 (251)
T ss_pred hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc---hHHHHHHHHhcC--Cc
Confidence 466778899999998765 455667778888888889999999999999887765443332 345555556788 66
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc-------CCCHHHHHHHHH
Q 000227 1744 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKF-------KHSCKVIIELLS 1802 (1826)
Q Consensus 1744 e~~~~vf~~a~~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~-------~~~~~~w~~~~~ 1802 (1826)
+.++.-|+.|+.|.+...--..|+.++...|..++|+.-|....+.. .+..+=|+..|.
T Consensus 177 a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~rkh~reW~~~A~ 242 (251)
T COG4700 177 ADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYRKHHREWIKTAN 242 (251)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 99999999999998888888899999999998877766555544433 334566776664
No 422
>PRK15331 chaperone protein SicA; Provisional
Probab=63.66 E-value=37 Score=37.34 Aligned_cols=85 Identities=11% Similarity=-0.016 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 000227 1724 KLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLS 1802 (1826)
Q Consensus 1724 ~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~-~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~ 1802 (1826)
.|+--+++.-=--..| ..+.|+.+|+-.|.+. -..+-|+-++..+...++|++|.++|..+.---++++......++
T Consensus 36 ~le~iY~~Ay~~y~~G--k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agq 113 (165)
T PRK15331 36 MMDGLYAHAYEFYNQG--RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQ 113 (165)
T ss_pred HHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHH
Confidence 3444455544446789 8899999999999654 357789999999999999999999999998877777777777788
Q ss_pred HHHhcccc
Q 000227 1803 FHFTSILS 1810 (1826)
Q Consensus 1803 ~~~~~~~~ 1810 (1826)
+++..++.
T Consensus 114 C~l~l~~~ 121 (165)
T PRK15331 114 CQLLMRKA 121 (165)
T ss_pred HHHHhCCH
Confidence 87766653
No 423
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=63.42 E-value=39 Score=44.03 Aligned_cols=112 Identities=16% Similarity=0.065 Sum_probs=93.6
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 000227 1672 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQ 1751 (1826)
Q Consensus 1672 ~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~ 1751 (1826)
-+--.+++..+|.|...|=-|.=.+..-.+++.|-+...+|++.-+. .+.||..+.-|-.+.| +++.....-.
T Consensus 61 ~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-----N~qilrDlslLQ~QmR--d~~~~~~tr~ 133 (700)
T KOG1156|consen 61 YELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-----NLQILRDLSLLQIQMR--DYEGYLETRN 133 (700)
T ss_pred HHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-----cHHHHHHHHHHHHHHH--hhhhHHHHHH
Confidence 33445677888999999999999998899999999999999975443 4569999999999999 8888888888
Q ss_pred HHHhcCCc-HHHHHHHHHHHHHcCChHHHHHHHHHHHHHc
Q 000227 1752 RALQYCDP-KKVHLALLGLYERTEQNKLADELLYKMIKKF 1790 (1826)
Q Consensus 1752 ~a~~~~~~-~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~ 1790 (1826)
+.+|..+. .--|+.++--+.-.|++..|-++.+...+..
T Consensus 134 ~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 134 QLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88877664 4458888888889999999999988887766
No 424
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=62.83 E-value=12 Score=27.09 Aligned_cols=32 Identities=16% Similarity=0.008 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 000227 1761 KVHLALLGLYERTEQNKLADELLYKMIKKFKH 1792 (1826)
Q Consensus 1761 kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~ 1792 (1826)
..|..++..|...++++.|...|+++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 46888899999999999999999999887663
No 425
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.62 E-value=20 Score=45.91 Aligned_cols=113 Identities=23% Similarity=0.236 Sum_probs=75.0
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHH
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEE 1744 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e 1744 (1826)
+++.-++++=|+-||...||...||=+|-+=.-....-+.|-+-+.||++.=|. =..-|.|+=|.|+|| | .+.
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNl----G--~yk 515 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNL----G--AYK 515 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhh----h--hHH
Confidence 334566778888888888888888888888777767788888888888764221 112345777777775 6 556
Q ss_pred HHHHHHHHHHhcC-------C----cHHHHHHHHHHHHHcCChHHHHHHHH
Q 000227 1745 AVVKVFQRALQYC-------D----PKKVHLALLGLYERTEQNKLADELLY 1784 (1826)
Q Consensus 1745 ~~~~vf~~a~~~~-------~----~~kv~~~~~~i~~~~~~~~~a~~~~~ 1784 (1826)
.|-+-|=+|+... + ..++|..+=-...-++..|.+.+++.
T Consensus 516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 6666676776321 1 24677766656666677776665543
No 426
>PF13041 PPR_2: PPR repeat family
Probab=62.46 E-value=26 Score=30.05 Aligned_cols=44 Identities=18% Similarity=0.028 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHc-CCCHHHHHHHHHH
Q 000227 1760 KKVHLALLGLYERTEQNKLADELLYKMIKKF-KHSCKVIIELLSF 1803 (1826)
Q Consensus 1760 ~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~-~~~~~~w~~~~~~ 1803 (1826)
.-.|..++..|.+.|++++|.++|+.|.++- +-+...|.....-
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4579999999999999999999999999763 3356666555543
No 427
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.94 E-value=1.1e+02 Score=39.89 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=83.0
Q ss_pred HHHhCCCch-hHHHHHHHHHHhcCCHHHHHHHHHHHHh-hcccchhhhHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHH
Q 000227 1678 LVRSSPNSS-FVWIKYMAFMLSMADVEKARSIAERALQ-TINIREENEKLNIWVAYFNLE-NEYGNPPEEAVVKVFQRAL 1754 (1826)
Q Consensus 1678 ~l~~~p~ss-~lWi~y~~f~l~~~ei~kAR~i~erAl~-~i~~re~~e~~niW~a~l~lE-~~~G~~~~e~~~~vf~~a~ 1754 (1826)
...++|..| .+-+.-|..++.+|+++.|-+|++--+. +.+--++.-..---++++-.+ ..-+ +.+.+..++..|+
T Consensus 367 ~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~--~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 367 FADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIK--DNDSASAVLDSAI 444 (652)
T ss_pred HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhcc--CCccHHHHHHHHH
Confidence 334557653 3667788999999999999999993320 000000000001133444333 3445 5688999999999
Q ss_pred hcC--------CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 000227 1755 QYC--------DPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSF 1803 (1826)
Q Consensus 1755 ~~~--------~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~ 1803 (1826)
+|- ...-+|-..+.|..+.|+.+.|-.+|+..++++|.+.++-....-.
T Consensus 445 ~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a 501 (652)
T KOG2376|consen 445 KWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTA 501 (652)
T ss_pred HHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 652 1344677788899999999999999999999999987776655443
No 428
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=61.59 E-value=1.4e+02 Score=33.35 Aligned_cols=96 Identities=22% Similarity=0.263 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhhcccchhhhHHHHH-HHHHHHHHHcCC-C----CHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHc-
Q 000227 1702 VEKARSIAERALQTINIREENEKLNIW-VAYFNLENEYGN-P----PEEAVVKVFQRALQYCD-PKKVHLALLGLYERT- 1773 (1826)
Q Consensus 1702 i~kAR~i~erAl~~i~~re~~e~~niW-~a~l~lE~~~G~-~----~~e~~~~vf~~a~~~~~-~~kv~~~~~~i~~~~- 1773 (1826)
++.||+.++.+...-|. +.+.|+=| .|++.| ..+-+ + -.+.|..-|++|++.+| ....+.-+...|...
T Consensus 7 FE~ark~aea~y~~nP~--DadnL~~WG~ALLEL-Aqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL--DADNLTNWGGALLEL-AQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH-HHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH--hHHHHHHHHHHHHHH-HhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 58999999999765543 35667778 455555 33431 0 23456666777776655 445555555544322
Q ss_pred ---CC-------hHHHHHHHHHHHHHcCCCHHHHHHH
Q 000227 1774 ---EQ-------NKLADELLYKMIKKFKHSCKVIIEL 1800 (1826)
Q Consensus 1774 ---~~-------~~~a~~~~~~~~kk~~~~~~~w~~~ 1800 (1826)
.+ |++|.+.|++++..=|.+.--|.++
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 22 4455555555555557555545443
No 429
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=61.45 E-value=25 Score=44.47 Aligned_cols=60 Identities=15% Similarity=0.023 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCc-H---HHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000227 1728 WVAYFNLENEYGNPPEEAVVKVFQRALQYCDP-K---KVHLALLGLYERTEQNKLADELLYKMIKK 1789 (1826)
Q Consensus 1728 W~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~~-~---kv~~~~~~i~~~~~~~~~a~~~~~~~~kk 1789 (1826)
|+.+-..-...| .++.|...|++|++.++. . ..|..++-.|...|++++|.+.|+++++.
T Consensus 78 ~~NLG~AL~~lG--ryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 78 AVNLGLSLFSKG--RVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333335568 889999999999977654 3 35999999999999999999999999996
No 430
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=61.30 E-value=46 Score=37.75 Aligned_cols=101 Identities=19% Similarity=0.214 Sum_probs=69.3
Q ss_pred CHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 000227 1671 TPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVF 1750 (1826)
Q Consensus 1671 s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf 1750 (1826)
|.++.+|+....-+|....+.| |+|..-+=+.||..+-.+-++=.. +.-.+=.|+..+=... +.+.+..++
T Consensus 93 s~~~l~~L~~~tk~S~dP~llY--y~Wsr~~d~~A~~~fL~~E~~~~l----~t~elq~aLAtyY~kr---D~~Kt~~ll 163 (203)
T PF11207_consen 93 SYQELERLQEETKNSQDPYLLY--YHWSRFGDQEALRRFLQLEGTPEL----ETAELQYALATYYTKR---DPEKTIQLL 163 (203)
T ss_pred HHHHHHHHHHHHccCCCccHHH--HHhhccCcHHHHHHHHHHcCCCCC----CCHHHHHHHHHHHHcc---CHHHHHHHH
Confidence 4677788887777777776666 777765557788777777443211 1112445555443333 678999999
Q ss_pred HHHHhcCC-----cHHHHHHHHHHHHHcCChHHHH
Q 000227 1751 QRALQYCD-----PKKVHLALLGLYERTEQNKLAD 1780 (1826)
Q Consensus 1751 ~~a~~~~~-----~~kv~~~~~~i~~~~~~~~~a~ 1780 (1826)
-+|++..+ ...++..++.+|.+.++++.|-
T Consensus 164 ~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 164 LRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 99996543 4689999999999999998873
No 431
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=60.29 E-value=1.2e+02 Score=37.53 Aligned_cols=122 Identities=17% Similarity=0.126 Sum_probs=88.5
Q ss_pred HhcccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHH-------
Q 000227 1662 RLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNL------- 1734 (1826)
Q Consensus 1662 ~~~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~l------- 1734 (1826)
.+++.+.-+.+++-..++...|+-.--=+..++-..+.+++-|+-.|+|+|-+.-|-.+ ||..|..+
T Consensus 239 s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~------ia~lY~~ar~gdta~ 312 (531)
T COG3898 239 SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD------IALLYVRARSGDTAL 312 (531)
T ss_pred HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH------HHHHHHHhcCCCcHH
Confidence 35577766777777888888899888888899999999999999999999988766543 78877753
Q ss_pred ---------HHHcCC---------------CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH-HcCChHHHHHHHHHHHHH
Q 000227 1735 ---------ENEYGN---------------PPEEAVVKVFQRALQYCDPKKVHLALLGLYE-RTEQNKLADELLYKMIKK 1789 (1826)
Q Consensus 1735 ---------E~~~G~---------------~~~e~~~~vf~~a~~~~~~~kv~~~~~~i~~-~~~~~~~a~~~~~~~~kk 1789 (1826)
|..--| .+.-.+|.--+.+....+...+|+.|+.|++ ++|+-.++|+..-++++-
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 221110 0112233333333345567889999999986 459999999999999875
No 432
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=58.32 E-value=46 Score=40.31 Aligned_cols=86 Identities=16% Similarity=0.097 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000227 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1826)
Q Consensus 1668 ~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~ 1747 (1826)
..++--.|+.+-...|.+..++...+..++++++++.|.++++.|+..-+.. -..+...+-+-...|.+ .+.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~-----~d~LaNliv~~~~~gk~-~~~~~ 256 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND-----PDTLANLIVCSLHLGKP-TEAAE 256 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH-----HHHHHHHHHHHHHTT-T-CHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHhCCC-hhHHH
Confidence 5556667777766667777777777888888888888888888886533221 23566666666667732 25566
Q ss_pred HHHHHHHhcCCc
Q 000227 1748 KVFQRALQYCDP 1759 (1826)
Q Consensus 1748 ~vf~~a~~~~~~ 1759 (1826)
+.+++..+.++.
T Consensus 257 ~~l~qL~~~~p~ 268 (290)
T PF04733_consen 257 RYLSQLKQSNPN 268 (290)
T ss_dssp HHHHHCHHHTTT
T ss_pred HHHHHHHHhCCC
Confidence 666666655444
No 433
>PRK10676 DNA-binding transcriptional regulator ModE; Provisional
Probab=58.08 E-value=91 Score=37.22 Aligned_cols=114 Identities=13% Similarity=0.190 Sum_probs=67.8
Q ss_pred EEEEEEEEEeccc----EEEEcCCC---cEEEEeccccCchhhhcccccccCCCCCccccCCCEEEEEEEEEecCccccc
Q 000227 136 KLWGVVAEVNEKD----LVICLPGG---LRGLARAADALDPILDNEIEANEDNLLPTIFHVGQLVSCIVLQLDDDKKEIG 208 (1826)
Q Consensus 136 ~vlG~V~~i~~~~----l~vsLp~~---l~G~v~~t~is~~~~~~~~~~~~~~~L~~~f~vGq~v~~~V~~~~~~~~~~~ 208 (1826)
.+-|+|.+|...+ +.|.|..+ |...|+-..+.+- -..+|+.|++.|.+.
T Consensus 129 ~l~g~V~~i~~~~~~~~v~v~l~~g~~~l~a~IT~~s~~~L----------------~l~~G~~v~~~Ika~-------- 184 (263)
T PRK10676 129 QWFGTITARDHQQVQQHVDVLLADGKTRLKVAITAQSAERL----------------GLDEGKEVLVLIKAP-------- 184 (263)
T ss_pred cceeEEEEEEeCCcccEEEEEEcCCCcEEEEEeCHHHHhhc----------------CCCCCCeEEEEEECC--------
Confidence 6789999997542 44556433 3444433222221 246899999998753
Q ss_pred eeEEEEecchhhhccCCCcccccCCcEEEEEEEEEeeceE----EEEeC-CCCeEEEeeCCCCCcCCCCCCCCCcEEEEE
Q 000227 209 KRKIWLSLRLSLLYKGLSLETVQEGMVLTAYVKSIEDHGY----ILHFG-LPSFTGFLPRNNLAENSGIDVKPGLLLQGV 283 (1826)
Q Consensus 209 ~~~i~LSl~p~~vn~~l~~~~l~~G~~l~~~V~svEDhG~----ild~G-i~~~~gFl~~~~~~~~~~~~l~~G~~~~~~ 283 (1826)
.|.|+..+.. + ...-..+.|.|.+++..|. .++++ -..+.+-++...+. ...|.+|+.+.+.
T Consensus 185 --~V~l~~~~~~---~-----~SarN~l~g~V~~i~~~~~~~~V~l~l~~g~~l~A~IT~~s~~---~L~L~~G~~V~a~ 251 (263)
T PRK10676 185 --WVGITQDPAV---A-----QAADNQLPGTISHIERGAEQSEVLMALPDGQTLCATVPNNEAA---RLSLQQGDAVTAY 251 (263)
T ss_pred --EEEEEcCCCC---C-----CChhheEEEEEEEEEeCCCcEEEEEEeCCCCEEEEEecHHHHH---hcCCCCCCEEEEE
Confidence 3666543211 1 1223479999999998754 34442 12255566654432 2378999999999
Q ss_pred EEE
Q 000227 284 VRS 286 (1826)
Q Consensus 284 V~~ 286 (1826)
|..
T Consensus 252 iKa 254 (263)
T PRK10676 252 FNA 254 (263)
T ss_pred EEc
Confidence 965
No 434
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=58.04 E-value=1.2e+02 Score=35.81 Aligned_cols=105 Identities=12% Similarity=0.062 Sum_probs=70.1
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hcCCcHHH-
Q 000227 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL-QYCDPKKV- 1762 (1826)
Q Consensus 1685 ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~-~~~~~~kv- 1762 (1826)
+...|=.=+.=+|+.|+.++|-..+++....-|+.+..++-.+=.+|.+.- -| +.+.|...++|-+ +|+.++.+
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk--~~--~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK--NG--EYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh--cc--cHHHHHHHHHHHHHhCCCCCChh
Confidence 345566666778888888888888888888778877777766777776653 35 5688888888888 45544333
Q ss_pred HHHHHHHHHHc---C----C---hHHHHHHHHHHHHHcCCC
Q 000227 1763 HLALLGLYERT---E----Q---NKLADELLYKMIKKFKHS 1793 (1826)
Q Consensus 1763 ~~~~~~i~~~~---~----~---~~~a~~~~~~~~kk~~~~ 1793 (1826)
|..|++..... . + ...|..-|+..+.+||+|
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS 149 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNS 149 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCC
Confidence 33333332211 1 1 236667777888899876
No 435
>PRK06763 F0F1 ATP synthase subunit alpha; Validated
Probab=57.32 E-value=1.1e+02 Score=34.28 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=32.2
Q ss_pred cEEEEEEEEEecCceEEEecccCceEEEEeeeccCCccccCCCeEEEE
Q 000227 876 SVIEGKVHESNDFGVVVSFEEHSDVYGFITHHQLAGATVESGSVIQAA 923 (1826)
Q Consensus 876 ~~V~g~V~~i~~~Gv~v~l~~~~~v~g~i~~~~ls~~~~~~G~~v~~~ 923 (1826)
+.++|.|.++.+.-+.++...+.+- +..++=+...+++||.|+|-
T Consensus 40 ~tiEGrVvEV~~~~i~iesk~yn~~---v~i~~d~~~nvKVGD~VKaT 84 (213)
T PRK06763 40 STIEGRVVEVDNGVIVIKSKQYEEP---VSVYIDSLSNVKVGDEVKAT 84 (213)
T ss_pred ceeeeEEEEEeCCEEEEEeccCCCc---eEEEecCCCCcccCcEEEEc
Confidence 6799999999988777887754322 33333344567999999975
No 436
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=57.08 E-value=63 Score=38.95 Aligned_cols=101 Identities=15% Similarity=0.179 Sum_probs=66.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHHh-hcccchhhhHHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHhcC-
Q 000227 1685 SSFVWIKYMAFMLSMADVEKARSIAERALQ-TINIREENEKLNIWVAYFNLENEYGNP-----PEEAVVKVFQRALQYC- 1757 (1826)
Q Consensus 1685 ss~lWi~y~~f~l~~~ei~kAR~i~erAl~-~i~~re~~e~~niW~a~l~lE~~~G~~-----~~e~~~~vf~~a~~~~- 1757 (1826)
-+..|++-+.|.-|.++.+.|-+.+.+-.. ++. ..-|+.|....|.|=.-|+.- ..|.|..++++.+.|.
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs---~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVS---LGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER 179 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh---cccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh
Confidence 357999999999999999999777766643 222 234667777777777777721 2477888888887654
Q ss_pred -CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc
Q 000227 1758 -DPKKVHLALLGLYERTEQNKLADELLYKMIKKF 1790 (1826)
Q Consensus 1758 -~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~ 1790 (1826)
...|+|.-+-.. .-.++.+|-.+|-..+--|
T Consensus 180 rNRlKvY~Gly~m--svR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 180 RNRLKVYQGLYCM--SVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred hhhHHHHHHHHHH--HHHhHHHHHHHHHHHcccc
Confidence 455665543222 2245666666666666555
No 437
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=56.92 E-value=1.3e+02 Score=36.07 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=83.0
Q ss_pred hHHHHHHHHHHhcC-CHHHHHHHHHHHHhhccc--------chh-hhHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-
Q 000227 1687 FVWIKYMAFMLSMA-DVEKARSIAERALQTINI--------REE-NEKLNIWVAYFNLENEYGNP-PEEAVVKVFQRAL- 1754 (1826)
Q Consensus 1687 ~lWi~y~~f~l~~~-ei~kAR~i~erAl~~i~~--------re~-~e~~niW~a~l~lE~~~G~~-~~e~~~~vf~~a~- 1754 (1826)
.+-..+..-.+..+ +++.|-.-++||++.++. .+. .-++.|-..+++--..-+++ ..++|..+.+.+-
T Consensus 36 ~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~ 115 (278)
T PF08631_consen 36 RVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLES 115 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 44456777777888 899999999999887532 111 12456666666555555522 2345666666665
Q ss_pred hcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 000227 1755 QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFH 1804 (1826)
Q Consensus 1755 ~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~ 1804 (1826)
+++++..+|...+++..+.+..+.+.+++.+|+..+......|-.+...+
T Consensus 116 e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 116 EYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred hCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 67888999988888888889999999999999999876566666555554
No 438
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.31 E-value=89 Score=36.16 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhhcccchhhhHHHH------HHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-------cHHHHHHHH
Q 000227 1701 DVEKARSIAERALQTINIREENEKLNI------WVAYFNLENEYGNPPEEAVVKVFQRALQYCD-------PKKVHLALL 1767 (1826)
Q Consensus 1701 ei~kAR~i~erAl~~i~~re~~e~~ni------W~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~-------~~kv~~~~~ 1767 (1826)
+.++|-..+++|++.-. +..+++. =+|=+ +|..+- +.+.|..-|+.|-.|.. .-+-+++.+
T Consensus 88 ~~~eAv~cL~~aieIyt---~~Grf~~aAk~~~~iaEi-yEsdl~--d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA 161 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYT---DMGRFTMAAKHHIEIAEI-YESDLQ--DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA 161 (288)
T ss_pred ChHHHHHHHHHHHHHHH---hhhHHHHHHhhhhhHHHH-HhhhHH--HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence 57777788888875332 1223322 22221 455556 77899999999998753 467789999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHc
Q 000227 1768 GLYERTEQNKLADELLYKMIKKF 1790 (1826)
Q Consensus 1768 ~i~~~~~~~~~a~~~~~~~~kk~ 1790 (1826)
++-.+.++|.+|..+|++..+.-
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99899999999999999987755
No 439
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=55.67 E-value=47 Score=44.57 Aligned_cols=52 Identities=8% Similarity=0.217 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHhC-CCchhHHHHHHHHH-------HhcCCHHHHHHHHHHHHhhcccc
Q 000227 1668 APRTPDEFERLVRSS-PNSSFVWIKYMAFM-------LSMADVEKARSIAERALQTINIR 1719 (1826)
Q Consensus 1668 ~p~s~~~fer~l~~~-p~ss~lWi~y~~f~-------l~~~ei~kAR~i~erAl~~i~~r 1719 (1826)
.|-|..-|+=|-..+ -++..||+.-.-.- +....++.-...++.-...++.+
T Consensus 217 ~ssa~~~y~La~~l~r~~~d~LW~AIvGlT~q~i~~~i~~~~Y~~~~~~L~~eV~rl~~~ 276 (622)
T PF02724_consen 217 KSSAVLMYELASSLGRDDNDLLWLAIVGLTDQYIHERISSERYDRYVPLLQDEVSRLNPS 276 (622)
T ss_pred ccHHHHHHHHHHHhCCCchHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Confidence 888888898776544 56788998643332 33445666666666665555443
No 440
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=55.01 E-value=26 Score=29.34 Aligned_cols=35 Identities=14% Similarity=0.287 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHH
Q 000227 1672 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKAR 1706 (1826)
Q Consensus 1672 ~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR 1706 (1826)
..-|.+++..+|+.-..|+-|+.|--+.|+.++|.
T Consensus 2 ~~all~AI~~~P~ddt~RLvYADWL~e~gdp~rae 36 (42)
T TIGR02996 2 EEALLRAILAHPDDDTPRLVYADWLDEHGDPARAE 36 (42)
T ss_pred cHHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHHh
Confidence 35799999999999999999999999999886654
No 441
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=53.43 E-value=57 Score=38.31 Aligned_cols=78 Identities=15% Similarity=0.048 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-hcCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHH-HH
Q 000227 1724 KLNIWVAYFNLENEYGNPPEEAVVKVFQRAL-QYCD---PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKV-II 1798 (1826)
Q Consensus 1724 ~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~-~~~~---~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~-w~ 1798 (1826)
.-+.|..=..=|.+-| +.+.|.+.|+... |++- ..++-+.++..+.+.++++.|....++.++.||+++++ |+
T Consensus 33 p~~~LY~~g~~~L~~g--n~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 33 PASELYNEGLTELQKG--NYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 3467999888899999 8899999999888 5542 57888888888999999999999999999999998765 55
Q ss_pred HHHHH
Q 000227 1799 ELLSF 1803 (1826)
Q Consensus 1799 ~~~~~ 1803 (1826)
.|.+.
T Consensus 111 ~Ylkg 115 (254)
T COG4105 111 YYLKG 115 (254)
T ss_pred HHHHH
Confidence 55544
No 442
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=53.28 E-value=26 Score=26.92 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 000227 1687 FVWIKYMAFMLSMADVEKARSIAERALQTI 1716 (1826)
Q Consensus 1687 ~lWi~y~~f~l~~~ei~kAR~i~erAl~~i 1716 (1826)
.+|......+++++++++|++.+++|++.-
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 578899999999999999999999998643
No 443
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=53.21 E-value=20 Score=27.36 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000227 1762 VHLALLGLYERTEQNKLADELLYKMIKK 1789 (1826)
Q Consensus 1762 v~~~~~~i~~~~~~~~~a~~~~~~~~kk 1789 (1826)
.|..++.-|.+.|++++|.++|..|.+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4888999999999999999999999754
No 444
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=52.83 E-value=2.4e+02 Score=36.45 Aligned_cols=141 Identities=14% Similarity=0.055 Sum_probs=94.3
Q ss_pred CCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHH-HHHHHHHHHHcCCC-CHH
Q 000227 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNI-WVAYFNLENEYGNP-PEE 1744 (1826)
Q Consensus 1667 ~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~ni-W~a~l~lE~~~G~~-~~e 1744 (1826)
+.+....-|..++..+ ......-..++-++..+.++..+..++.|++.- ||.-+..|. =.++..+=+.|++- +.+
T Consensus 239 ~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g--re~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVG--RELRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred hHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh--HHHHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 3556678888888888 555555777888899999999999999986543 443333332 22222222222210 567
Q ss_pred HHHHHHHHHHh-cCC------------cHHHHHHHHH--------------HHHHcCChHHHHHHHHHHHHHcCCCHHHH
Q 000227 1745 AVVKVFQRALQ-YCD------------PKKVHLALLG--------------LYERTEQNKLADELLYKMIKKFKHSCKVI 1797 (1826)
Q Consensus 1745 ~~~~vf~~a~~-~~~------------~~kv~~~~~~--------------i~~~~~~~~~a~~~~~~~~kk~~~~~~~w 1797 (1826)
-+...|++|+. +.. ..+.+..++- -+...|+|..|...|.+|+++-|.+..++
T Consensus 316 ~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lY 395 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLY 395 (539)
T ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHH
Confidence 88889999883 221 1122222211 12367899999999999999999999999
Q ss_pred HHHHHHHHhcccc
Q 000227 1798 IELLSFHFTSILS 1810 (1826)
Q Consensus 1798 ~~~~~~~~~~~~~ 1810 (1826)
-+.|.+|++-|.-
T Consensus 396 sNRAac~~kL~~~ 408 (539)
T KOG0548|consen 396 SNRAACYLKLGEY 408 (539)
T ss_pred HHHHHHHHHHhhH
Confidence 9999998877654
No 445
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=50.66 E-value=2.5e+02 Score=37.74 Aligned_cols=112 Identities=16% Similarity=0.082 Sum_probs=86.3
Q ss_pred HHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Q 000227 1676 ERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQ 1755 (1826)
Q Consensus 1676 er~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~ 1755 (1826)
..+-...|-+...|-+-.......++.+.|-+-+--|+..-|.. ..+-.|...+-...|++.....+.+...|++
T Consensus 674 ~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h-----v~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 674 LEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH-----VPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 33434456666666555567778999999999999998543322 2367888888888996544555569999998
Q ss_pred c-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC
Q 000227 1756 Y-CDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKH 1792 (1826)
Q Consensus 1756 ~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~ 1792 (1826)
+ +...+.|+.++.++...|+.+.|-+.|..++.-=+.
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 7 568999999999999999999999999999876543
No 446
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.51 E-value=42 Score=40.71 Aligned_cols=89 Identities=17% Similarity=0.189 Sum_probs=69.5
Q ss_pred HHhcccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCC
Q 000227 1661 ERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGN 1740 (1826)
Q Consensus 1661 ~~~~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~ 1740 (1826)
+++-++..-..++.|.+++..||.+..+.-..+.-++.+.-..+|-.=+.+|+. ||.....+ --|--|. +..+|
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~e-in~Dsa~~--ykfrg~A--~rllg- 196 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE-INPDSAKG--YKFRGYA--ERLLG- 196 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhc-cCcccccc--cchhhHH--HHHhh-
Confidence 345577788889999999999999999999999999999999999999999985 44433222 2355555 45678
Q ss_pred CCHHHHHHHHHHHHhc
Q 000227 1741 PPEEAVVKVFQRALQY 1756 (1826)
Q Consensus 1741 ~~~e~~~~vf~~a~~~ 1756 (1826)
+.+.+...|..||+.
T Consensus 197 -~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 197 -NWEEAAHDLALACKL 211 (377)
T ss_pred -chHHHHHHHHHHHhc
Confidence 668888888888854
No 447
>PRK15464 cold shock-like protein CspH; Provisional
Probab=49.67 E-value=47 Score=31.25 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=39.1
Q ss_pred EEEEEEEEee-ceE-EEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEE
Q 000227 1472 VIGQIKRVES-YGL-FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526 (1826)
Q Consensus 1472 v~G~V~~v~~-~Gv-FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~ 1526 (1826)
++|+|+.-.+ .|. ||..++++-+-++|+|.+..... ..+.+||+|...|..
T Consensus 5 ~~G~Vk~fn~~KGfGFI~~~~g~~DvFvH~s~l~~~g~----~~l~~G~~V~f~v~~ 57 (70)
T PRK15464 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRVN 57 (70)
T ss_pred ceEEEEEEECCCCeEEEccCCCCccEEEEehhehhcCC----CCCCCCCEEEEEEEE
Confidence 4799998764 576 88887767899999999864422 357899999987664
No 448
>PRK06386 replication factor A; Reviewed
Probab=48.92 E-value=6.4e+02 Score=31.59 Aligned_cols=193 Identities=17% Similarity=0.082 Sum_probs=0.0
Q ss_pred EEEEEEEEE---------cCcCeEEEEECCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecc
Q 000227 1263 VGGRISKIL---------SGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRT 1333 (1826)
Q Consensus 1263 v~g~V~~v~---------~~~~g~~V~l~~~~~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~f~~G~~V~~~Vl~id~~ 1333 (1826)
+.|+|+.+. +. .+..-+=..-.|.|++|-.. +...++.|+.++..=..++.=
T Consensus 17 v~akVl~~~~r~i~~~~g~~--~~~~gllgDeTG~I~fT~W~-----------------~~~~l~~Gd~v~i~na~v~~~ 77 (358)
T PRK06386 17 LKVKVLSLNKRTIKNDRGET--IYYYGIIGDETGTVPFTAWE-----------------FPDAVKSGDVIEIKYCYSKEY 77 (358)
T ss_pred EEEEEEEccceEEecCCCCe--EEEEEEEECCcceEEEEecC-----------------CcccCCCCCEEEEEeEEEeeE
Q ss_pred cCCceEEEEEe-eeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCE---EEEEEEEEecceEEEEeCCCeEEEEEcc
Q 000227 1334 VRGTFHVELSL-RSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMI---VQGYVKNVTSKGCFIMLSRKLDAKVLLS 1409 (1826)
Q Consensus 1334 ~~g~~~i~LS~-r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~---v~G~V~~v~~~GvFV~l~~~v~g~v~is 1409 (1826)
++++.|++ +.+. -....+-...-........+.+|.+|+. |.|+|..+... .++ ..+-.+.|.--
T Consensus 78 ---~G~~~Lnv~~~t~-----v~~~~d~~iev~~~~~~~KI~DL~~g~~~v~V~akVle~~e~--e~~-~~g~~~~v~sg 146 (358)
T PRK06386 78 ---NGKIRIYFDSRSE-----VMLKPDENIEVKRTYKLVKIRDLSLVTPYVSVIGKITGITKK--EYD-SDGTSKIVYQG 146 (358)
T ss_pred ---CCEEEEEEcCceE-----EEecCccccccccccCccEeEeccCCCCceEEEEEEEEccCc--eEe-cCCCccEEEEE
Q ss_pred ccCCC----ccCCCCccCCCCcEEEEEEEEEeCCCCeEEE------EEeccccccccccccccccccCCCC---EEEEEE
Q 000227 1410 NLSDG----YVESPEKEFPIGKLVAGRVLSVEPLSKRVEV------TLKTSDSRTASQSEINNLSNLHVGD---IVIGQI 1476 (1826)
Q Consensus 1410 elsd~----~v~~~~~~f~vGq~V~~kVl~vd~e~~rI~l------Slk~s~~~~~~~~~~~~~~~~~~G~---iv~G~V 1476 (1826)
-|.|. ++..|.+.+..|+.|+..=..++.-+++++| ++...+.+...........++..++ .+.|.|
T Consensus 147 ~lgDeTGrIr~TlW~~~l~eGd~v~i~na~v~e~~G~~el~v~~~t~I~~~~~~iev~~~~~~I~di~~~~g~v~i~G~i 226 (358)
T PRK06386 147 YIEDDTARVRISSFGKPLEDNRFVRIENARVSQYNGYIEISVGNKSVIKEVESDINLESRNIFIFEIKSPVGGITIMGFI 226 (358)
T ss_pred EEEcCCCeEEEEEccccccCCCEEEEeeeEEEccCCeEEEEeCCeEEEEECCCCcccCccccchhhhhccCCeEEEEEEE
Q ss_pred EEEeec-eEE
Q 000227 1477 KRVESY-GLF 1485 (1826)
Q Consensus 1477 ~~v~~~-GvF 1485 (1826)
..|.+. |+|
T Consensus 227 v~i~~gsgli 236 (358)
T PRK06386 227 VSVGQGSRIF 236 (358)
T ss_pred EEEcCCcEeE
No 449
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=48.75 E-value=1.4e+02 Score=39.33 Aligned_cols=123 Identities=18% Similarity=0.221 Sum_probs=72.0
Q ss_pred HHHHHHhCCCchhHHHHHHHHHHhcCC-------------HHHHHHH------HHHHHhhcccchhhhHHHHHHHHHHHH
Q 000227 1675 FERLVRSSPNSSFVWIKYMAFMLSMAD-------------VEKARSI------AERALQTINIREENEKLNIWVAYFNLE 1735 (1826)
Q Consensus 1675 fer~l~~~p~ss~lWi~y~~f~l~~~e-------------i~kAR~i------~erAl~~i~~re~~e~~niW~a~l~lE 1735 (1826)
|-..++.-|+-...||+.+++-|..++ +.|||.+ +..|-..|. .+...-..+---+.-||
T Consensus 466 fles~~~~~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~g-gdgt~fykvra~lail~ 544 (1636)
T KOG3616|consen 466 FLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIG-GDGTDFYKVRAMLAILE 544 (1636)
T ss_pred HHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhC-CCCchHHHHHHHHHHHH
Confidence 333456779999999999999988776 4455432 222211110 00011112322333445
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccccc
Q 000227 1736 NEYGNPPEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSILSIF 1812 (1826)
Q Consensus 1736 ~~~G~~~~e~~~~vf~~a~~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~~~~ 1812 (1826)
..|. .|+.+|= +.|+.. ..+.+|....++++|.++.+. +-+|.-.++-.+|.+++++.+-.+.
T Consensus 545 kkfk-----~ae~ifl---eqn~te----~aigmy~~lhkwde~i~lae~--~~~p~~eklk~sy~q~l~dt~qd~k 607 (1636)
T KOG3616|consen 545 KKFK-----EAEMIFL---EQNATE----EAIGMYQELHKWDEAIALAEA--KGHPALEKLKRSYLQALMDTGQDEK 607 (1636)
T ss_pred hhhh-----HHHHHHH---hcccHH----HHHHHHHHHHhHHHHHHHHHh--cCChHHHHHHHHHHHHHHhcCchhh
Confidence 5554 2344442 233332 245677788899999888764 5678778888899999988876544
No 450
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=48.68 E-value=18 Score=47.85 Aligned_cols=16 Identities=25% Similarity=0.673 Sum_probs=8.1
Q ss_pred CCccccCCCEEEEEEE
Q 000227 183 LPTIFHVGQLVSCIVL 198 (1826)
Q Consensus 183 L~~~f~vGq~v~~~V~ 198 (1826)
..++|.+-..+-|++.
T Consensus 147 ~~~~~~~~~~~d~~~~ 162 (1516)
T KOG1832|consen 147 IDDVFNVSGVVDCKIK 162 (1516)
T ss_pred cchhccccccceeccC
Confidence 3455555555555543
No 451
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.62 E-value=4.6e+02 Score=31.45 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=34.9
Q ss_pred HHHHHHh--CCCchhHHHHHHHHHH----hcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHH--
Q 000227 1675 FERLVRS--SPNSSFVWIKYMAFML----SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV-- 1746 (1826)
Q Consensus 1675 fer~l~~--~p~ss~lWi~y~~f~l----~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~-- 1746 (1826)
+=+.|.- ||.+|..||.+=.-.+ +.+ =+|--+.-+|--+.-...-|.|-..+|......-.+.+ +.+++
T Consensus 60 lYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkn-eeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~--D~~ng~~ 136 (412)
T COG5187 60 LYKYLAEKGNPKTSASVIKFDRGRMNTLLKKN-EEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIM--DIQNGFE 136 (412)
T ss_pred HHHHHHhccCCcccchheehhhHHHHHHHHhh-HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHh--hhhhHHH
Confidence 3444433 7777777776543332 222 12222222222111111123445566777666666666 54444
Q ss_pred --HHHHHHHH
Q 000227 1747 --VKVFQRAL 1754 (1826)
Q Consensus 1747 --~~vf~~a~ 1754 (1826)
+++|.+|+
T Consensus 137 ~~~~~~~~a~ 146 (412)
T COG5187 137 WMRRLMRDAM 146 (412)
T ss_pred HHHHHHHHHH
Confidence 34444444
No 452
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=48.42 E-value=83 Score=30.76 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=51.6
Q ss_pred EEEEEEEEEeeceEEE-EECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEeccc
Q 000227 764 VVHGYVCNIIETGCFV-RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQS 833 (1826)
Q Consensus 764 ~~~G~V~~i~~~GvfV-~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~ 833 (1826)
.+.|.|+.+.+.+.|. ++.||..=++|.|-=-.. -.-..-+||.|.+.+...|.+++||+--.+..
T Consensus 8 e~~G~V~e~Lp~~~frV~LenG~~vla~isGKmR~----~rIrIl~GD~V~VE~spYDltkGRIiyR~~~~ 74 (87)
T PRK12442 8 ELDGIVDEVLPDSRFRVTLENGVEVGAYASGRMRK----HRIRILAGDRVTLELSPYDLTKGRINFRHKDE 74 (87)
T ss_pred EEEEEEEEECCCCEEEEEeCCCCEEEEEeccceee----eeEEecCCCEEEEEECcccCCceeEEEEecCC
Confidence 4789999998888764 999998888887632111 11236799999999999999999999888753
No 453
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=48.09 E-value=1.7e+02 Score=30.87 Aligned_cols=55 Identities=20% Similarity=0.241 Sum_probs=38.2
Q ss_pred HHhcCCcHHHHHHHHHHHHHcCChHHHHHHHHH-------HHHHc--CCCHHHHHHHHHHHHhc
Q 000227 1753 ALQYCDPKKVHLALLGLYERTEQNKLADELLYK-------MIKKF--KHSCKVIIELLSFHFTS 1807 (1826)
Q Consensus 1753 a~~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~-------~~kk~--~~~~~~w~~~~~~~~~~ 1807 (1826)
|+..+.....|...+-+|.+.|.++.|-+++-. +++.+ ...+++|...+.++++.
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~~~l~~ 138 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALLDK 138 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHHHHHcc
Confidence 444444556777888888888888877766533 33333 34789999999998864
No 454
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=46.82 E-value=74 Score=31.48 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=13.2
Q ss_pred HHhcCCHHHHHHHHHHHHhh
Q 000227 1696 MLSMADVEKARSIAERALQT 1715 (1826)
Q Consensus 1696 ~l~~~ei~kAR~i~erAl~~ 1715 (1826)
.|+.+++..|.+-+.|.+..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~ 27 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDY 27 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 45667777777777777654
No 455
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=46.11 E-value=1.1e+02 Score=34.25 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC----cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHc
Q 000227 1726 NIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD----PKKVHLALLGLYERTEQNKLADELLYKMIKKF 1790 (1826)
Q Consensus 1726 niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~----~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~ 1790 (1826)
..|.+..++-...| +.+.|.+.|.++.+|+. .-.|++.++.+....+++..+.....++-.-.
T Consensus 37 ~~~~~l~~~~~~~G--d~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~ 103 (177)
T PF10602_consen 37 MALEDLADHYCKIG--DLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI 103 (177)
T ss_pred HHHHHHHHHHHHhh--hHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35777778888889 99999999999999884 35568888888899999998888877775444
No 456
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=45.90 E-value=3.2e+02 Score=33.44 Aligned_cols=136 Identities=12% Similarity=0.021 Sum_probs=97.1
Q ss_pred CCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHH
Q 000227 1667 DAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAV 1746 (1826)
Q Consensus 1667 ~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~ 1746 (1826)
....+-..|..+++.+|++-....+.+--+|-.|.-..|-.=+.|.|..=|. + +-.-+.--++-...| ..|+|
T Consensus 53 Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD---F--~~ARiQRg~vllK~G--ele~A 125 (504)
T KOG0624|consen 53 QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPD---F--MAARIQRGVVLLKQG--ELEQA 125 (504)
T ss_pred hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc---H--HHHHHHhchhhhhcc--cHHHH
Confidence 3444477899999999999998888888888888766666667777653221 0 001122233444578 77999
Q ss_pred HHHHHHHHhcCC----cHHHHHHHHHH------------HHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1747 VKVFQRALQYCD----PKKVHLALLGL------------YERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1747 ~~vf~~a~~~~~----~~kv~~~~~~i------------~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
..-|...++.++ ....+.+++.| +.-+|++..|.+.....+.-.|=...++..-|++|+..+.
T Consensus 126 ~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e 204 (504)
T KOG0624|consen 126 EADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGE 204 (504)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCc
Confidence 999999997765 23333333333 3457899999999999999999999999999999887653
No 457
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=45.44 E-value=92 Score=37.12 Aligned_cols=114 Identities=15% Similarity=0.190 Sum_probs=69.0
Q ss_pred CCCEEEEEEEEEEcCcCeEE-EEECCceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEecccCCc
Q 000227 1259 EGDIVGGRISKILSGVGGLV-VQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGT 1337 (1826)
Q Consensus 1259 ~G~iv~g~V~~v~~~~~g~~-V~l~~~~~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~f~~G~~V~~~Vl~id~~~~g~ 1337 (1826)
.|.++.|+|....+.+ |+. +.++. .. -|.+. ....+|+.++++|-.-|
T Consensus 231 ~~~vl~~~V~~hd~~y-~lt~l~l~~---~~--------l~v~~-------------~~a~~g~~~R~~I~a~D------ 279 (352)
T COG4148 231 QSSVLEGTVLEHDPRY-GLTALALGD---QH--------LWVPK-------------LDAPVGARLRIRIQARD------ 279 (352)
T ss_pred cceEEEEEehhcCCCc-ceEEEecCc---eE--------EEeec-------------cCCCCCCcEEEEEEccc------
Confidence 7999999999998873 332 33442 11 24332 22358999999987755
Q ss_pred eEEEEEeeeccCCCCCCCCCCCCCCCCCCcccccccccCCCCCEEEEEEEEEecce----EEEEeCCCeEEEEEccccCC
Q 000227 1338 FHVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVTSKG----CFIMLSRKLDAKVLLSNLSD 1413 (1826)
Q Consensus 1338 ~~i~LS~r~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~~~G----vFV~l~~~v~g~v~iselsd 1413 (1826)
+.+.+++.. .. ..=.+++|+|+.+.+.+ ++++++ +-.-...++..+.
T Consensus 280 --Vslal~~P~---------------------~~-----SirNiLp~~v~~i~~~~~~V~v~ld~~-g~~l~Arit~~sr 330 (352)
T COG4148 280 --VSLALQKPE---------------------QT-----SIRNILPGKVVGIEDDDGQVDVQLDCG-GKTLWARITPWAR 330 (352)
T ss_pred --eEEEecCcc---------------------cc-----chhhccceeEEEEEcCCCcEEEEEEcC-CcEEEEEccHhhH
Confidence 556665543 11 12235678888886543 445555 3333334444432
Q ss_pred CccCCCCccCCCCcEEEEEEEEEe
Q 000227 1414 GYVESPEKEFPIGKLVAGRVLSVE 1437 (1826)
Q Consensus 1414 ~~v~~~~~~f~vGq~V~~kVl~vd 1437 (1826)
+ + -.+++||.|-+.|.+|.
T Consensus 331 d---~--L~l~~G~~v~AqIKsVs 349 (352)
T COG4148 331 D---E--LALKPGQWVYAQIKSVS 349 (352)
T ss_pred H---h--hcCCCCCeEEEEEEEEE
Confidence 2 1 24789999999998764
No 458
>PRK15463 cold shock-like protein CspF; Provisional
Probab=45.26 E-value=60 Score=30.54 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=39.0
Q ss_pred EEEEEEEEee-ceE-EEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEE
Q 000227 1472 VIGQIKRVES-YGL-FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526 (1826)
Q Consensus 1472 v~G~V~~v~~-~Gv-FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~ 1526 (1826)
++|+|+.-.+ .|. ||..++++-+-++|+|.+...- ...+.+||+|...+..
T Consensus 5 ~~G~Vk~fn~~kGfGFI~~~~g~~DvFvH~sal~~~g----~~~l~~G~~V~f~v~~ 57 (70)
T PRK15463 5 MTGIVKTFDGKSGKGLITPSDGRKDVQVHISALNLRD----AEELTTGLRVEFCRIN 57 (70)
T ss_pred ceEEEEEEeCCCceEEEecCCCCccEEEEehhhhhcC----CCCCCCCCEEEEEEEE
Confidence 4799998865 566 8888776789999999987542 2357899999987554
No 459
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.37 E-value=85 Score=37.18 Aligned_cols=82 Identities=13% Similarity=0.072 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHH-hcCC---cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCC---HHHHHH
Q 000227 1727 IWVAYFNLENEYGNPPEEAVVKVFQRAL-QYCD---PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHS---CKVIIE 1799 (1826)
Q Consensus 1727 iW~a~l~lE~~~G~~~~e~~~~vf~~a~-~~~~---~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~---~~~w~~ 1799 (1826)
.+-+.+.+ ..-| ++..|+.-|..-+ .|+. ....|.-|.+.+...|+++.|-.+|.++++.||++ +..-+.
T Consensus 144 ~Y~~A~~~-~ksg--dy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSG--DYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcC--CHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 34444444 2357 7889999999999 5654 35567778898999999999999999999999766 566888
Q ss_pred HHHHHHhccccc
Q 000227 1800 LLSFHFTSILSI 1811 (1826)
Q Consensus 1800 ~~~~~~~~~~~~ 1811 (1826)
.+..+.+.+++.
T Consensus 221 lg~~~~~l~~~d 232 (262)
T COG1729 221 LGVSLGRLGNTD 232 (262)
T ss_pred HHHHHHHhcCHH
Confidence 888887777653
No 460
>KOG4078 consensus Putative mitochondrial ribosomal protein mRpS35 [Translation, ribosomal structure and biogenesis]
Probab=44.36 E-value=27 Score=36.37 Aligned_cols=54 Identities=19% Similarity=0.321 Sum_probs=44.2
Q ss_pred CCCceEEEEEEEEecCeEEEEeCCCeEEEEecccccCCCCCCCccccCCCCCEEEEEEEEEe
Q 000227 320 VPGMMVSTRVQSILENGVMLSFLTYFTGTVDIFHLQNTFPTTNWKNDYNQHKKVNARILFVD 381 (1826)
Q Consensus 320 ~pG~~V~~~V~~V~~~Gl~v~~~~~~~G~v~~~hl~~~~~~~~~~~~y~~G~~v~arVl~v~ 381 (1826)
..|-+|-|.|-.|..+.+.++|++.|........+. .+.|..|..|+-|++...
T Consensus 81 a~gklV~GkIfhiV~~DlYIDFG~KFhcVC~rP~~n--------~e~Y~~GaRVrlRl~DlE 134 (173)
T KOG4078|consen 81 AKGKLVIGKIFHIVEEDLYIDFGGKFHCVCKRPALN--------GEAYQKGARVRLRLIDLE 134 (173)
T ss_pred cCCcEEEeeeeeeeccceEEecCCeEEEEEcCcCcC--------HHHhhcCceEEEEEcChh
Confidence 358899999999999999999999998876554443 248999999999987643
No 461
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.67 E-value=59 Score=36.71 Aligned_cols=48 Identities=15% Similarity=0.042 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 000227 1744 EAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK 1791 (1826)
Q Consensus 1744 e~~~~vf~~a~~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~ 1791 (1826)
+...+..++.+++.+...+|.+++.++...|+.++|+++..++..-||
T Consensus 128 ~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 455567778888889999999999999999999999999999999999
No 462
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=43.31 E-value=1.8e+02 Score=36.50 Aligned_cols=105 Identities=15% Similarity=0.006 Sum_probs=74.4
Q ss_pred cCCHHHHHHHHHHHHhhcccch-------hhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-----cHHHHHHH
Q 000227 1699 MADVEKARSIAERALQTINIRE-------ENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-----PKKVHLAL 1766 (1826)
Q Consensus 1699 ~~ei~kAR~i~erAl~~i~~re-------~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~-----~~kv~~~~ 1766 (1826)
+.+.++|-.-.++||++=|... ..-++.+|..--|.-...| .+..+.+.|..|++.-| -.++|...
T Consensus 216 ~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G--~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG--NYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc--chhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 5678888888888887654322 2334567888888888888 77889999999997543 35667777
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 000227 1767 LGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHF 1805 (1826)
Q Consensus 1767 ~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~ 1805 (1826)
+....+.|+..+|..-++++++.-+.-.+-.+.-|++++
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 777788888888887777777766654555555555543
No 463
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=43.04 E-value=43 Score=30.33 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=34.7
Q ss_pred EEEEEEEEEeece----EEEEeCCCC-eEEEeeCCCCCcCCCCCCCCCcEEEEEEE
Q 000227 235 VLTAYVKSIEDHG----YILHFGLPS-FTGFLPRNNLAENSGIDVKPGLLLQGVVR 285 (1826)
Q Consensus 235 ~l~~~V~svEDhG----~ild~Gi~~-~~gFl~~~~~~~~~~~~l~~G~~~~~~V~ 285 (1826)
.+.|.|..+|..| +.+++|=.. +++.++...+. ...|++|+.+.+.|.
T Consensus 6 ~l~g~V~~ie~~g~~~~v~~~~~~~~~l~a~it~~~~~---~L~L~~G~~V~~~ik 58 (64)
T PF03459_consen 6 QLPGTVESIENLGSEVEVTLDLGGGETLTARITPESAE---ELGLKPGDEVYASIK 58 (64)
T ss_dssp EEEEEEEEEEESSSEEEEEEEETTSEEEEEEEEHHHHH---HCT-STT-EEEEEE-
T ss_pred EEEEEEEEEEECCCeEEEEEEECCCCEEEEEEcHHHHH---HcCCCCCCEEEEEEe
Confidence 6899999999999 666776444 78888776542 236899999998885
No 464
>KOG1004 consensus Exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Translation, ribosomal structure and biogenesis]
Probab=42.35 E-value=78 Score=35.77 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=47.5
Q ss_pred CCCCCEEEEEEEEEeCCEEEEEECCCceEEEEccccCCCCchhhhhccccCCCCEEEEEEEEEe
Q 000227 1161 VSIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSIN 1224 (1826)
Q Consensus 1161 ~~~G~~v~g~V~~v~~~~l~V~i~~~~~g~l~~~~~s~~~~~l~~~~~~f~vG~~v~v~V~~vd 1224 (1826)
+.+||.|.|.|.....+..||+|+..-.|-|+++....- -+.-...+.+|+-|-++|...+
T Consensus 63 P~~~D~VIGiV~~~~gd~ykVDigg~~~a~L~~laFe~A---tkrNrPnl~vGdliyakv~~a~ 123 (230)
T KOG1004|consen 63 PVKGDHVIGIVTSKSGDIYKVDIGGSEPASLSYLAFEGA---TKRNRPNLQVGDLIYAKVVDAN 123 (230)
T ss_pred CCCCCEEEEEEEeccCceEEEecCCCCeeeeeeccccCc---cccCCCccccccEEEEEEEecC
Confidence 478999999999999999999999877888887643221 1122346899999999998754
No 465
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=42.00 E-value=45 Score=26.74 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 000227 1762 VHLALLGLYERTEQNKLADELLYKMIKKFK 1791 (1826)
Q Consensus 1762 v~~~~~~i~~~~~~~~~a~~~~~~~~kk~~ 1791 (1826)
.+..++.+|...|++++|.+++++++..+.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 467788999999999999999999988764
No 466
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=41.84 E-value=1.6e+02 Score=39.63 Aligned_cols=117 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred CchhHHHHHHHHHHh----------cCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 000227 1684 NSSFVWIKYMAFMLS----------MADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRA 1753 (1826)
Q Consensus 1684 ~ss~lWi~y~~f~l~----------~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a 1753 (1826)
.|..+|=..++.-.+ +|....||.. ||++ |.+++..+.=..-.-|-.++| -.|.|..+|.+.
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga--RAlR----~a~q~~~e~eakvAvLAieLg--MlEeA~~lYr~c 826 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA--RALR----RAQQNGEEDEAKVAVLAIELG--MLEEALILYRQC 826 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH--HHHH----HHHhCCcchhhHHHHHHHHHh--hHHHHHHHHHHH
Q ss_pred Hh-------------------------cCCcHHHHHHHHHHHHHcCChHHHHHHHHHH-----------------HHHc-
Q 000227 1754 LQ-------------------------YCDPKKVHLALLGLYERTEQNKLADELLYKM-----------------IKKF- 1790 (1826)
Q Consensus 1754 ~~-------------------------~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~-----------------~kk~- 1790 (1826)
-+ ...-..-|.+|++.++..++.+.|.+.|+++ ++.|
T Consensus 827 kR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 827 KRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Q ss_pred --CCCHHHHHHHHHHHHhcc
Q 000227 1791 --KHSCKVIIELLSFHFTSI 1808 (1826)
Q Consensus 1791 --~~~~~~w~~~~~~~~~~~ 1808 (1826)
...+++|-=|++++...|
T Consensus 907 ~~~~d~~L~~WWgqYlES~G 926 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVG 926 (1416)
T ss_pred HhccchHHHHHHHHHHhccc
No 467
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=41.78 E-value=47 Score=25.44 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q 000227 1762 VHLALLGLYERTEQNKLADELLYKMIKK 1789 (1826)
Q Consensus 1762 v~~~~~~i~~~~~~~~~a~~~~~~~~kk 1789 (1826)
.|..++..+.+.|+++.|.++|+.|.+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5888899999999999999999999763
No 468
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=41.40 E-value=75 Score=30.26 Aligned_cols=51 Identities=24% Similarity=0.311 Sum_probs=38.5
Q ss_pred EEEEEEEee-ceE-EEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEE
Q 000227 1473 IGQIKRVES-YGL-FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKV 1527 (1826)
Q Consensus 1473 ~G~V~~v~~-~Gv-FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~i 1527 (1826)
+|+|+.-.+ .|. ||..++++-+-++|+|.+...- ...+.+||.|...+..-
T Consensus 3 ~G~Vkwfn~~KGfGFI~~~~gg~dVFvH~s~i~~~g----~~~l~~G~~V~f~~~~~ 55 (74)
T PRK09937 3 KGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDG----YRTLKAGQSVQFDVHQG 55 (74)
T ss_pred CeEEEEEeCCCCeEEEeeCCCCccEEEEEeeccccC----CCCCCCCCEEEEEEEEC
Confidence 478887654 566 8888776899999999986432 24578999999987654
No 469
>PRK10676 DNA-binding transcriptional regulator ModE; Provisional
Probab=41.08 E-value=1.6e+02 Score=35.29 Aligned_cols=114 Identities=10% Similarity=0.055 Sum_probs=68.5
Q ss_pred CEEEEEEEEEeec--eEEEE--ECCC---eEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEEEEeccccc
Q 000227 763 SVVHGYVCNIIET--GCFVR--FLGR---LTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRITLSLKQSCC 835 (1826)
Q Consensus 763 ~~~~G~V~~i~~~--GvfV~--f~~g---l~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~LSlk~~~~ 835 (1826)
..+.|.|+.|... +..|+ +..| +...+... ...+ -.+.+|+.|.+.|-.-+ +.|.....
T Consensus 128 N~l~g~V~~i~~~~~~~~v~v~l~~g~~~l~a~IT~~-----s~~~--L~l~~G~~v~~~Ika~~-----V~l~~~~~-- 193 (263)
T PRK10676 128 NQWFGTITARDHQQVQQHVDVLLADGKTRLKVAITAQ-----SAER--LGLDEGKEVLVLIKAPW-----VGITQDPA-- 193 (263)
T ss_pred hcceeEEEEEEeCCcccEEEEEEcCCCcEEEEEeCHH-----HHhh--cCCCCCCeEEEEEECCE-----EEEEcCCC--
Confidence 3689999999765 45554 4433 33333322 1111 23679999988877643 44432110
Q ss_pred CCCcchhhHHHHHHHHHHHHhhcccCCCcccccccccCCCcEEEEEEEEEecCceE--EEec--ccCceEEEEeeeccCC
Q 000227 836 SSTDASFMQEHFLLEEKIAMLQSSKHNGSELKWVEGFIIGSVIEGKVHESNDFGVV--VSFE--EHSDVYGFITHHQLAG 911 (1826)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vG~~V~g~V~~i~~~Gv~--v~l~--~~~~v~g~i~~~~ls~ 911 (1826)
.....-..+.|+|.++...|.. |.+. +...+.+.|+...+..
T Consensus 194 ----------------------------------~~~SarN~l~g~V~~i~~~~~~~~V~l~l~~g~~l~A~IT~~s~~~ 239 (263)
T PRK10676 194 ----------------------------------VAQAADNQLPGTISHIERGAEQSEVLMALPDGQTLCATVPNNEAAR 239 (263)
T ss_pred ----------------------------------CCCChhheEEEEEEEEEeCCCcEEEEEEeCCCCEEEEEecHHHHHh
Confidence 0112236789999999876643 4443 2223666777666655
Q ss_pred ccccCCCeEEEEE
Q 000227 912 ATVESGSVIQAAI 924 (1826)
Q Consensus 912 ~~~~~G~~v~~~V 924 (1826)
-.+.+|+.|.+.+
T Consensus 240 L~L~~G~~V~a~i 252 (263)
T PRK10676 240 LSLQQGDAVTAYF 252 (263)
T ss_pred cCCCCCCEEEEEE
Confidence 6789999998876
No 470
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=41.03 E-value=3.9e+02 Score=28.44 Aligned_cols=97 Identities=19% Similarity=0.126 Sum_probs=73.6
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHH
Q 000227 1656 IRAAEERLLEKDAPRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLE 1735 (1826)
Q Consensus 1656 ~~~~~~~~~~~~~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE 1735 (1826)
+..+|.. +...+.+-|..+|...|.....+=..+.-..-+++.++|-.=+++|+..-..+ -.-.+.-++.---|-
T Consensus 51 valaE~g----~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 51 IALAEAG----DLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHhcc----chHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHH
Confidence 4444443 44456789999999999998888887777777788999999999999876655 334555666666677
Q ss_pred HHcCCCCHHHHHHHHHHHHhcCCc
Q 000227 1736 NEYGNPPEEAVVKVFQRALQYCDP 1759 (1826)
Q Consensus 1736 ~~~G~~~~e~~~~vf~~a~~~~~~ 1759 (1826)
...| +.+.+|.-|++|.+.-.+
T Consensus 126 Rl~g--~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 126 RLLG--NDDAARADFEAAAQLGSK 147 (175)
T ss_pred HHhC--chHHHHHhHHHHHHhCCH
Confidence 7789 789999999998876543
No 471
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=40.90 E-value=1.1e+02 Score=28.78 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=46.1
Q ss_pred EEEEEEEEEeeceEE-EEECCCeEEEEeCCCcCcccccCcccCCCCCCEEEEEEEEeeCCCCeEE
Q 000227 764 VVHGYVCNIIETGCF-VRFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDVNSETGRIT 827 (1826)
Q Consensus 764 ~~~G~V~~i~~~Gvf-V~f~~gl~Glv~~s~l~~~~~~~~~~~f~vGq~V~~~V~~id~e~~rl~ 827 (1826)
.+.|.|+...+.|.| |++.||..=++|.+-=-. .-.-...+|+.|.+.+...|.+++|+.
T Consensus 6 e~~G~V~e~L~~~~f~V~l~ng~~vla~i~GKmr----~~rI~I~~GD~V~Ve~spyd~tkgrIi 66 (68)
T TIGR00008 6 EMEGKVTESLPNAMFRVELENGHEVLAHISGKIR----MHYIRILPGDKVKVELSPYDLTRGRIT 66 (68)
T ss_pred EEEEEEEEECCCCEEEEEECCCCEEEEEecCcch----hccEEECCCCEEEEEECcccCCcEeEE
Confidence 478999999888866 599999888888763211 112237799999999999999988885
No 472
>PRK15464 cold shock-like protein CspH; Provisional
Probab=40.77 E-value=79 Score=29.74 Aligned_cols=50 Identities=22% Similarity=0.247 Sum_probs=37.2
Q ss_pred EEEEEEEEec-ceE-EEEeCC-CeEEEEEccccCCCccCCCCccCCCCcEEEEEEEE
Q 000227 1382 VQGYVKNVTS-KGC-FIMLSR-KLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435 (1826)
Q Consensus 1382 v~G~V~~v~~-~Gv-FV~l~~-~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~ 1435 (1826)
+.|+|+..++ +|. ||.... +-+.|+|++.|...-. ..+.+||.|...|..
T Consensus 5 ~~G~Vk~fn~~KGfGFI~~~~g~~DvFvH~s~l~~~g~----~~l~~G~~V~f~v~~ 57 (70)
T PRK15464 5 MTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDA----EVLIPGLRVEFCRVN 57 (70)
T ss_pred ceEEEEEEECCCCeEEEccCCCCccEEEEehhehhcCC----CCCCCCCEEEEEEEE
Confidence 4799999955 665 787655 5799999999964322 235699999998765
No 473
>PF01938 TRAM: TRAM domain; InterPro: IPR002792 The TRAM (after TRM2 and miaB) domain is a 60-70-residue-long module that is found in: Two distinct classes of tRNA-modifying enzymes, namely uridine methylases of the TRM2 family and enzymes of the miaB family that are involved in 2- methylthioadenine formation In several other proteins associated with the translation machinery In a family of small uncharacterised archaeal proteins that are predicted to have a role in the regulation of tRNA modification and/or translation The TRAM domain can be found alone or in association with other domains, such as the catalytic biotin/lipoate synthetase-like domain, the RNA methylase domain, the ribosomal S2 domain and the eIF2-beta domain. The TRAM domain is predicted to bind tRNA and deliver the RNA-modifying enzymatic domain to their targets []. Secondary structure prediction indicates that the TRAM domain adopts a simple beta-barrel fold. The conservation pattern of the TRAM domain consists primarily of small and hydrophobic residues that correspond to five beta-strands in the predicted secondary structure [].; PDB: 1YEZ_A 2BH2_A 1UWV_A 1YVC_A.
Probab=40.28 E-value=1.4e+02 Score=26.85 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=34.6
Q ss_pred cCCCEEEEEEEEEEeCCCeEEEEeccccccccccccccCCC--CcEEEEEEEEEecCcEEEE
Q 000227 458 KEGSCVRVRILGFRHLEGLATGILKASAFEGLVFTHSDVKP--GMVVKGKVIAVDSFGAIVQ 517 (1826)
Q Consensus 458 ~vG~~~~~rVi~~~~~d~~~~ls~k~~~~~~~~~~~~~l~~--G~iv~g~V~~v~~~G~~V~ 517 (1826)
++|+++.+.|.+.. .++..+.-.+. .....+..-.| |+.++.+|++..++-++-+
T Consensus 3 ~~G~~~~VlVe~~~-~~g~~~gr~~~----~~~V~v~~~~~~iG~~v~v~I~~~~~~~l~G~ 59 (61)
T PF01938_consen 3 YVGKTLEVLVEELG-DEGQGIGRTDN----GKVVFVPGGLPLIGEFVKVRITKAKKNYLFGE 59 (61)
T ss_dssp -TTEEEEEEEEEE--TTSEEEEEET-----TEEEEETT--T--TEEEEEEEEEE-SSEEEEE
T ss_pred cCCcEEEEEEEEec-CCCEEEEEeCC----CeEEEECCCCCCCCCEEEEEEEEeeCCcEEEE
Confidence 58999999999988 55655554432 12222333356 9999999999988766544
No 474
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=39.95 E-value=32 Score=43.22 Aligned_cols=13 Identities=8% Similarity=0.335 Sum_probs=9.4
Q ss_pred CCCCHHHHHHHHH
Q 000227 1668 APRTPDEFERLVR 1680 (1826)
Q Consensus 1668 ~p~s~~~fer~l~ 1680 (1826)
+=.++++|..+|.
T Consensus 808 vfa~ad~ya~~ld 820 (821)
T COG5593 808 VFASADDYAQYLD 820 (821)
T ss_pred cccchHHHHHHhc
Confidence 4467888888764
No 475
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=39.11 E-value=58 Score=25.07 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 000227 1687 FVWIKYMAFMLSMADVEKARSIAERALQT 1715 (1826)
Q Consensus 1687 ~lWi~y~~f~l~~~ei~kAR~i~erAl~~ 1715 (1826)
.+|......+.+++++++|.+.+++|++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57999999999999999999999999864
No 476
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=39.05 E-value=2.9e+02 Score=25.22 Aligned_cols=50 Identities=22% Similarity=0.102 Sum_probs=36.2
Q ss_pred EEEEEEEEec---ceEEEEeCCCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEE
Q 000227 1382 VQGYVKNVTS---KGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435 (1826)
Q Consensus 1382 v~G~V~~v~~---~GvFV~l~~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~ 1435 (1826)
.+|+|+...+ +|....-+.+-+.|+|++++.... -..+..|+.|+..+..
T Consensus 1 ~~G~V~~~~~~kgyGFI~~~~~~~diFfh~s~~~~~~----~~~l~~G~~V~F~~~~ 53 (66)
T PF00313_consen 1 MTGTVKWFDDEKGYGFITSDDGGEDIFFHISDLSGNG----FRSLKEGDRVEFEVEE 53 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTSSSEEEEEGGGBCSSS----STS--TTSEEEEEEEE
T ss_pred CeEEEEEEECCCCceEEEEcccceeEEeccccccccc----cccCCCCCEEEEEEEE
Confidence 3789999975 465555555569999999998764 2345699999999877
No 477
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=38.97 E-value=4e+02 Score=32.12 Aligned_cols=119 Identities=17% Similarity=0.217 Sum_probs=73.3
Q ss_pred CCCCEEEEEEEEEeCCEEEEEECCCceEEEEccccCCCCchhhhhccccCCCCEEEEEEEEEeCCCcEEEEEecccccCC
Q 000227 1162 SIGQRVTGYVYKVDNEWALLTISRHLKAQLFILDSAYEPSELQEFQRRFHIGKAVTGHVLSINKEKKLLRLVLRPFQDGI 1241 (1826)
Q Consensus 1162 ~~G~~v~g~V~~v~~~~l~V~i~~~~~g~l~~~~~s~~~~~l~~~~~~f~vG~~v~v~V~~vd~~~~~l~LS~~~~~~~~ 1241 (1826)
+.|..+.|.|....+.|-...+.-+ .+.+.... ...++|+.+++.|..-| +.|.++++.
T Consensus 230 e~~~vl~~~V~~hd~~y~lt~l~l~-~~~l~v~~------------~~a~~g~~~R~~I~a~D-----Vslal~~P~--- 288 (352)
T COG4148 230 EQSSVLEGTVLEHDPRYGLTALALG-DQHLWVPK------------LDAPVGARLRIRIQARD-----VSLALQKPE--- 288 (352)
T ss_pred ccceEEEEEehhcCCCcceEEEecC-ceEEEeec------------cCCCCCCcEEEEEEccc-----eEEEecCcc---
Confidence 4578888999888776655444321 23333221 23578999999998744 566666552
Q ss_pred CCcccccccccccccccCCCEEEEEEEEEEcCcCeEEEEECC-ceEEEEecccccccccCCCCCCCCCCCCCCCCCCCCC
Q 000227 1242 SDKTVDISNDNMQTFIHEGDIVGGRISKILSGVGGLVVQIGP-HLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEG 1320 (1826)
Q Consensus 1242 ~~~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~~~g~~V~l~~-~~~G~v~~sel~d~~~~~~~~~~~~~~~~p~~~f~~G 1320 (1826)
... .-.++.|+|+.+.+..+.+-|++.- |..---.+|+.+. + .-.+++|
T Consensus 289 ---------~~S-----irNiLp~~v~~i~~~~~~V~v~ld~~g~~l~Arit~~sr----d------------~L~l~~G 338 (352)
T COG4148 289 ---------QTS-----IRNILPGKVVGIEDDDGQVDVQLDCGGKTLWARITPWAR----D------------ELALKPG 338 (352)
T ss_pred ---------ccc-----hhhccceeEEEEEcCCCcEEEEEEcCCcEEEEEccHhhH----H------------hhcCCCC
Confidence 122 4568899999998875455555431 3333334454432 2 1246799
Q ss_pred CEEEEEEEEEe
Q 000227 1321 QFVKCKVLEIS 1331 (1826)
Q Consensus 1321 ~~V~~~Vl~id 1331 (1826)
+.|.|.|.++.
T Consensus 339 ~~v~AqIKsVs 349 (352)
T COG4148 339 QWVYAQIKSVS 349 (352)
T ss_pred CeEEEEEEEEE
Confidence 99999988765
No 478
>KOG4078 consensus Putative mitochondrial ribosomal protein mRpS35 [Translation, ribosomal structure and biogenesis]
Probab=38.57 E-value=55 Score=34.22 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=45.2
Q ss_pred CCcEEEEEEEEEecceEEEEEcCCeEEEEeCcccCCCCCCCCCCCccCCCEEEEEEEEEc
Q 000227 585 DRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSI 644 (1826)
Q Consensus 585 ~G~~~~G~V~~i~~~G~~V~~~~gv~G~vp~sel~~~~~~~~~~~~~vGq~V~vrVl~vd 644 (1826)
.|..+.|+|..+...-+|++|++...+.+....+. .+.|..|..|..|+++..
T Consensus 82 ~gklV~GkIfhiV~~DlYIDFG~KFhcVC~rP~~n-------~e~Y~~GaRVrlRl~DlE 134 (173)
T KOG4078|consen 82 KGKLVIGKIFHIVEEDLYIDFGGKFHCVCKRPALN-------GEAYQKGARVRLRLIDLE 134 (173)
T ss_pred CCcEEEeeeeeeeccceEEecCCeEEEEEcCcCcC-------HHHhhcCceEEEEEcChh
Confidence 69999999999999999999998899999877763 236889999999998654
No 479
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=37.72 E-value=2.9e+02 Score=29.39 Aligned_cols=85 Identities=14% Similarity=0.090 Sum_probs=64.4
Q ss_pred hcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHH
Q 000227 1698 SMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCD-----PKKVHLALLGLYER 1772 (1826)
Q Consensus 1698 ~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~-----~~kv~~~~~~i~~~ 1772 (1826)
..++++.|-+.+..||...|-|-. .+..-..--...| +.|.+-+-+++|++... .-..|-+-+.+|..
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~raS-----ayNNRAQa~RLq~--~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERAS-----AYNNRAQALRLQG--DDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred hccchHHHHHHHHHHHHhcccchH-----hhccHHHHHHHcC--ChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 468899999999999988876642 3443444445578 67888888999997643 23457777779999
Q ss_pred cCChHHHHHHHHHHHHH
Q 000227 1773 TEQNKLADELLYKMIKK 1789 (1826)
Q Consensus 1773 ~~~~~~a~~~~~~~~kk 1789 (1826)
.|+.+.||.=|+.+...
T Consensus 128 ~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQL 144 (175)
T ss_pred hCchHHHHHhHHHHHHh
Confidence 99999999999998764
No 480
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=36.65 E-value=2.7e+02 Score=25.48 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=35.4
Q ss_pred EEEEEEEec---ceEEEEEcCCeEEEEeCcccCCCCCCCCCCCccCCCEEEEEEEE
Q 000227 590 HGWITKIEK---HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1826)
Q Consensus 590 ~G~V~~i~~---~G~~V~~~~gv~G~vp~sel~~~~~~~~~~~~~vGq~V~vrVl~ 642 (1826)
.|+|+...+ ||.+..-.++-.-|+|.+.+.-.. -..+..|+.|.+.+..
T Consensus 2 ~G~V~~~~~~kgyGFI~~~~~~~diFfh~s~~~~~~----~~~l~~G~~V~F~~~~ 53 (66)
T PF00313_consen 2 TGTVKWFDDEKGYGFITSDDGGEDIFFHISDLSGNG----FRSLKEGDRVEFEVEE 53 (66)
T ss_dssp EEEEEEEETTTTEEEEEETTSSSEEEEEGGGBCSSS----STS--TTSEEEEEEEE
T ss_pred eEEEEEEECCCCceEEEEcccceeEEeccccccccc----cccCCCCCEEEEEEEE
Confidence 689998874 566665445558999999996431 2468899999999987
No 481
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=36.50 E-value=2e+02 Score=39.54 Aligned_cols=57 Identities=18% Similarity=0.170 Sum_probs=34.6
Q ss_pred ccCCCEEEEEEEEEecC-eEEEEEEecCceEEEeeCc-cccc-ccccccccccccCCCCEEE
Q 000227 667 VKLGSLVSGVVDVVTPN-AVVVYVIAKGYSKGTIPTE-HLAD-HLEHATVMKSVIKPGYEFD 725 (1826)
Q Consensus 667 ~~vG~iv~g~V~~v~~~-g~~V~l~~~~~v~G~i~~~-hLsd-~~~~~~~l~~~lk~G~~i~ 725 (1826)
+.+|+.|...+-+.... |++..+ .+.+--++|.. .|.+ ..-....|.+.|++||.++
T Consensus 408 F~~GD~VeV~~Gel~glkG~ve~v--dg~~vti~~~~e~l~~pl~~~~~eLrKyF~~GDhVK 467 (1024)
T KOG1999|consen 408 FSPGDAVEVIVGELKGLKGKVESV--DGTIVTIMSKHEDLKGPLEVPASELRKYFEPGDHVK 467 (1024)
T ss_pred cCCCCeEEEeeeeeccceeEEEec--cCceEEEeeccccCCCccccchHhhhhhccCCCeEE
Confidence 77888887776655553 444444 34444444432 2333 1224556899999999998
No 482
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS). These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein
Probab=34.95 E-value=1.9e+02 Score=29.44 Aligned_cols=67 Identities=15% Similarity=0.287 Sum_probs=40.7
Q ss_pred EEEEEEEEEeece--EEEEEecC--ceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEe
Q 000227 1471 IVIGQIKRVESYG--LFITIENT--NLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLG 1537 (1826)
Q Consensus 1471 iv~G~V~~v~~~G--vFV~l~~~--~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~Ls 1537 (1826)
.+.|.|.++...| +|+.|-++ .+...+...+........+...+..|+.|.+.=.=...+.+.+++.
T Consensus 3 ~v~GwV~~~R~~g~~~Fi~lrd~~~~lQ~v~~~~~~~~~~~~~~~~~l~~g~~V~v~G~v~~~~~g~~El~ 73 (108)
T cd04322 3 SVAGRIMSKRGSGKLSFADLQDESGKIQVYVNKDDLGEEEFEDFKKLLDLGDIIGVTGTPFKTKTGELSIF 73 (108)
T ss_pred EEEEEEEEEecCCCeEEEEEEECCeEEEEEEECCCCCHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEE
Confidence 4789999998764 89999764 4555665554433333344445899999877422222233445443
No 483
>PF11813 DUF3334: Protein of unknown function (DUF3334); InterPro: IPR024513 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family are typically between 227 to 238 amino acids in length.
Probab=34.87 E-value=24 Score=39.36 Aligned_cols=20 Identities=35% Similarity=0.722 Sum_probs=17.2
Q ss_pred eeceEEEEECCCeEEEEeCC
Q 000227 773 IETGCFVRFLGRLTGFAPRS 792 (1826)
Q Consensus 773 ~~~GvfV~f~~gl~Glv~~s 792 (1826)
.+.||||-|.||+.||+-..
T Consensus 48 PDiGCFvlFDGGFsGLVviN 67 (229)
T PF11813_consen 48 PDIGCFVLFDGGFSGLVVIN 67 (229)
T ss_pred CCcceEEEecCCcceEEEEe
Confidence 46899999999999997654
No 484
>PRK09890 cold shock protein CspG; Provisional
Probab=34.67 E-value=1.2e+02 Score=28.45 Aligned_cols=51 Identities=20% Similarity=0.357 Sum_probs=37.8
Q ss_pred EEEEEEEEee-ceE-EEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEE
Q 000227 1472 VIGQIKRVES-YGL-FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526 (1826)
Q Consensus 1472 v~G~V~~v~~-~Gv-FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~ 1526 (1826)
++|+|+.-.+ .|. ||.-++++-+=++|+|.+..... ..+.+||.|...+..
T Consensus 5 ~~G~Vk~f~~~kGfGFI~~~~g~~dvFvH~s~l~~~~~----~~l~~G~~V~f~~~~ 57 (70)
T PRK09890 5 MTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEF----RTLNENQKVEFSIEQ 57 (70)
T ss_pred ceEEEEEEECCCCcEEEecCCCCceEEEEEeeeccCCC----CCCCCCCEEEEEEEE
Confidence 4799998754 455 78877667899999999875422 356899999986543
No 485
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.52 E-value=7.5e+02 Score=28.29 Aligned_cols=123 Identities=12% Similarity=0.104 Sum_probs=83.7
Q ss_pred ccCCCCCHHHHHHHHHhCCCchhH---HHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCC
Q 000227 1665 EKDAPRTPDEFERLVRSSPNSSFV---WIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNP 1741 (1826)
Q Consensus 1665 ~~~~p~s~~~fer~l~~~p~ss~l---Wi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~ 1741 (1826)
+.+.|.+....|++...+|.+.+- =|.-++=+...+++++|-..+.-++..- .++.-+.-+=+.+..+-...|
T Consensus 65 ~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t--~De~lk~l~~lRLArvq~q~~-- 140 (207)
T COG2976 65 QAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT--KDENLKALAALRLARVQLQQK-- 140 (207)
T ss_pred hcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc--hhHHHHHHHHHHHHHHHHHhh--
Confidence 567889999999999999888763 3455566778899999999999997422 222222223334444455667
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 000227 1742 PEEAVVKVFQRALQYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK 1791 (1826)
Q Consensus 1742 ~~e~~~~vf~~a~~~~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~ 1791 (1826)
..+.+.+++..-..-.=...+...-..|+...|+-+.||.-|++++..++
T Consensus 141 k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 141 KADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred hHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 45777666654321111223344556799999999999999999999984
No 486
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=33.37 E-value=68 Score=25.57 Aligned_cols=26 Identities=27% Similarity=0.137 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 000227 1689 WIKYMAFMLSMADVEKARSIAERALQ 1714 (1826)
Q Consensus 1689 Wi~y~~f~l~~~ei~kAR~i~erAl~ 1714 (1826)
|...+..+.+.|+.++|.++.++||.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67788999999999999999999873
No 487
>KOG1004 consensus Exosomal 3'-5' exoribonuclease complex subunit Rrp40 [Translation, ribosomal structure and biogenesis]
Probab=33.31 E-value=1.2e+02 Score=34.39 Aligned_cols=59 Identities=19% Similarity=0.125 Sum_probs=48.6
Q ss_pred CCCCcEEEEEEEEEecCcEEEEeCCCeEEeecCCCcccc-cccCCCCCcCCCCEEEEEEEEE
Q 000227 496 VKPGMVVKGKVIAVDSFGAIVQFPGGVKALCPLPHMSEF-EIVKPGKKFKVGAELVFRVLGV 556 (1826)
Q Consensus 496 l~~G~iv~g~V~~v~~~G~~V~i~~~v~G~Vp~~hlsd~-~l~~p~~~fkvG~~Vk~rVL~v 556 (1826)
-.+|+.|-|.|+.-...+.-|+|++.-.|.+|...+... +...| .+++|+-|-|||+.-
T Consensus 63 P~~~D~VIGiV~~~~gd~ykVDigg~~~a~L~~laFe~AtkrNrP--nl~vGdliyakv~~a 122 (230)
T KOG1004|consen 63 PVKGDHVIGIVTSKSGDIYKVDIGGSEPASLSYLAFEGATKRNRP--NLQVGDLIYAKVVDA 122 (230)
T ss_pred CCCCCEEEEEEEeccCceEEEecCCCCeeeeeeccccCccccCCC--ccccccEEEEEEEec
Confidence 357999999999999999999999767888888776653 45566 489999999999754
No 488
>PRK10943 cold shock-like protein CspC; Provisional
Probab=32.18 E-value=1.6e+02 Score=27.61 Aligned_cols=51 Identities=25% Similarity=0.272 Sum_probs=37.4
Q ss_pred EEEEEEEEEec-ceE-EEEeC-CCeEEEEEccccCCCccCCCCccCCCCcEEEEEEEE
Q 000227 1381 IVQGYVKNVTS-KGC-FIMLS-RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLS 1435 (1826)
Q Consensus 1381 ~v~G~V~~v~~-~Gv-FV~l~-~~v~g~v~iselsd~~v~~~~~~f~vGq~V~~kVl~ 1435 (1826)
.++|+|+..++ +|. ||.-. .+-+.|+|++.+...-. ..+.+|+.|...+..
T Consensus 3 ~~~G~Vk~f~~~kGfGFI~~~~g~~dvFvH~s~l~~~g~----~~l~~G~~V~f~~~~ 56 (69)
T PRK10943 3 KIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGF----KTLAEGQNVEFEIQD 56 (69)
T ss_pred ccceEEEEEeCCCCcEEEecCCCCeeEEEEhhHccccCC----CCCCCCCEEEEEEEE
Confidence 46899999865 554 77664 46899999999875422 235689999998655
No 489
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=32.13 E-value=3.8e+02 Score=33.60 Aligned_cols=135 Identities=16% Similarity=0.046 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHH
Q 000227 1668 APRTPDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVV 1747 (1826)
Q Consensus 1668 ~p~s~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~ 1747 (1826)
..++-+=|-++--.--|+..+..+.+..+--+.+...|-+.+-.|-..||..- .|.-.+..|-.+-| +...|-
T Consensus 540 ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp-----~ilskl~dlydqeg--dksqaf 612 (840)
T KOG2003|consen 540 LDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDP-----AILSKLADLYDQEG--DKSQAF 612 (840)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCH-----HHHHHHHHHhhccc--chhhhh
Confidence 33344445444444456777777777766667777888888888877776543 26777777777777 666666
Q ss_pred HHHHHHHhcCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Q 000227 1748 KVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKFKHSCKVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1748 ~vf~~a~~~~~-~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~~~~~w~~~~~~~~~~~~ 1809 (1826)
+.+-..-+|-+ .-.+..-++.+|.+..=+++|...|+++.---|+..+--+..|.++-+.||
T Consensus 613 q~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn 675 (840)
T KOG2003|consen 613 QCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN 675 (840)
T ss_pred hhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc
Confidence 65555555544 345555566677777778888888888876667544433444444444444
No 490
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.04 E-value=1.5e+02 Score=29.22 Aligned_cols=69 Identities=17% Similarity=0.124 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhcCCcH------HHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcccc
Q 000227 1742 PEEAVVKVFQRALQYCDPK------KVHLALLGLYERTEQNKLADELLYKMIKKFKH-SCKVIIELLSFHFTSILS 1810 (1826)
Q Consensus 1742 ~~e~~~~vf~~a~~~~~~~------kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~-~~~~w~~~~~~~~~~~~~ 1810 (1826)
..|.+...|+.+.+-.... -..+.++.++...|.+++|.+.++.+++...+ ....++.++..++....+
T Consensus 17 A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~l~~ 92 (94)
T PF12862_consen 17 ALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLANLLK 92 (94)
T ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhh
Confidence 3456666666666433322 33566777788888888888888888887733 466677777776655543
No 491
>TIGR02568 LcrE type III secretion regulator YopN/LcrE/InvE/MxiC. This protein is found in type III secretion operons and, in Yersinia is localized to the cell surface and is involved in the Low-Calicium Response (LCR), possibly by sensing the calcium concentration. In Salmonella, the gene is known as InvE and is believed to perform an essential role in the secretion process and interacts with the proteins SipBCD and SicA.//Altered name to reflect regulatory role. Added GO and role IDs. Negative regulation of type III secretion in Y pestis is mediated in part by a multiprotein complex that has been proposed to act as a physical impediment to type III secretion by blocking the entrance to the secretion apparatus prior to contact with mammalian cells. This complex is composed of YopN, its heterodimeric secretion chaperone SycN-YscB, and TyeA. PubMed: 15701523
Probab=32.02 E-value=7.4e+02 Score=29.16 Aligned_cols=115 Identities=12% Similarity=0.101 Sum_probs=63.7
Q ss_pred CHHH-HHHHHHhCCCchhHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-c---cchhhhHHHHHHHHHHHHHHcCCCCHHH
Q 000227 1671 TPDE-FERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTI-N---IREENEKLNIWVAYFNLENEYGNPPEEA 1745 (1826)
Q Consensus 1671 s~~~-fer~l~~~p~ss~lWi~y~~f~l~~~ei~kAR~i~erAl~~i-~---~re~~e~~niW~a~l~lE~~~G~~~~e~ 1745 (1826)
+..+ +..+-...|+.|..|+.-.+.--+..-=...++-+..++..+ . .+.-..-+|++.+.-.+...... ....
T Consensus 77 ~~~~ll~~l~~~f~D~s~~~laL~~ll~~~~~~~~~~~~l~~~~~~ll~~~~~~~i~agin~al~a~~f~~~~~~-~~~~ 155 (240)
T TIGR02568 77 GLEQLLALARGAFPDPSDQALALRAALQRLELDPAERKALEEAAQALLELEDGPTIRAGINTALAAAAFADQGDL-KAAA 155 (240)
T ss_pred CHHHHHHHHHhhCCChHHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHhhcc-cHHH
Confidence 4444 444445578999998877766665543233333333332222 1 12112234777777777664321 2247
Q ss_pred HHHHHHHHHhc-CCcHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 000227 1746 VVKVFQRALQY-CDPKKVHLALLGLYERTEQNKLADELLYKMI 1787 (1826)
Q Consensus 1746 ~~~vf~~a~~~-~~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~ 1787 (1826)
+|.+|..++.. .+...+|..++.-|- ..+.+.......+++
T Consensus 156 LR~lYr~~v~~~~~~~~~~~~~~~~~~-~~~~~~~l~fL~rAL 197 (240)
T TIGR02568 156 LRDLYRQAVSDQSSLVQLLSDLIERYG-AQRFDIVLDFLIRAL 197 (240)
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhC-chHHHHHHHHHHHHH
Confidence 99999999954 455666667666552 223445555555554
No 492
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=31.81 E-value=4.7e+02 Score=31.36 Aligned_cols=99 Identities=15% Similarity=0.221 Sum_probs=64.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cccchhhhHHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHhcC
Q 000227 1686 SFVWIKYMAFMLSMADVEKARSIAERALQT-INIREENEKLNIWVAYFNLENEYGNPPE-------EAVVKVFQRALQYC 1757 (1826)
Q Consensus 1686 s~lWi~y~~f~l~~~ei~kAR~i~erAl~~-i~~re~~e~~niW~a~l~lE~~~G~~~~-------e~~~~vf~~a~~~~ 1757 (1826)
+..|++-++|+-|.++++.+-+.+.|.+.. +. -.-|+.|.+.-+.|=.-|| +. |.+..++++.+.|.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~s---tg~KiDv~l~kiRlg~~y~--d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMS---TGLKIDVFLCKIRLGLIYG--DRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHh---cccchhhHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHhCCCHH
Confidence 589999999999999999987777776542 11 2346778888888888898 53 45555566655443
Q ss_pred --CcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcC
Q 000227 1758 --DPKKVHLALLGLYERTEQNKLADELLYKMIKKFK 1791 (1826)
Q Consensus 1758 --~~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~ 1791 (1826)
...|+|.-+-. ..-.++.+|-.++-..+--|.
T Consensus 190 RrNRyK~Y~Gi~~--m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 190 RRNRYKVYKGIFK--MMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred hhhhHHHHHHHHH--HHHHhhHHHHHHHHHHhcccc
Confidence 33444433222 223456666666666666663
No 493
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=31.55 E-value=67 Score=27.36 Aligned_cols=27 Identities=30% Similarity=0.225 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHc
Q 000227 1764 LALLGLYERTEQNKLADELLYKMIKKF 1790 (1826)
Q Consensus 1764 ~~~~~i~~~~~~~~~a~~~~~~~~kk~ 1790 (1826)
+.++..|.+.|+++.||++.+..+...
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 468899999999999999999998644
No 494
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=31.15 E-value=4.5e+02 Score=33.13 Aligned_cols=134 Identities=15% Similarity=0.042 Sum_probs=94.0
Q ss_pred cCCCCCHHHHHHHHHhCCCchhHHHHHHHH------------HHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHH
Q 000227 1666 KDAPRTPDEFERLVRSSPNSSFVWIKYMAF------------MLSMADVEKARSIAERALQTINIREENEKLNIWVAYFN 1733 (1826)
Q Consensus 1666 ~~~p~s~~~fer~l~~~p~ss~lWi~y~~f------------~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~ 1733 (1826)
.+.......|+++|...|+.+..-..||.- -.++|.+-+|-++.-.||..=|-... -.-.++.-...
T Consensus 217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-~naklY~nra~ 295 (486)
T KOG0550|consen 217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-TNAKLYGNRAL 295 (486)
T ss_pred cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-hhHHHHHHhHh
Confidence 345566788999999999988877776643 34578899999999999764332211 01112222222
Q ss_pred HHHHcCCCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHcCChHHHHHHHHHHHHHcCC--CHHHHHHHHH
Q 000227 1734 LENEYGNPPEEAVVKVFQRALQYCD-PKKVHLALLGLYERTEQNKLADELLYKMIKKFKH--SCKVIIELLS 1802 (1826)
Q Consensus 1734 lE~~~G~~~~e~~~~vf~~a~~~~~-~~kv~~~~~~i~~~~~~~~~a~~~~~~~~kk~~~--~~~~w~~~~~ 1802 (1826)
.-..+| ....+..-+++|+...+ --+.|++-++.|...++|+.|.+-|+++++.-.. --..|.....
T Consensus 296 v~~rLg--rl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~ 365 (486)
T KOG0550|consen 296 VNIRLG--RLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQL 365 (486)
T ss_pred hhcccC--CchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 334578 55778888999997765 4688999999999999999999999999987654 3455555443
No 495
>PRK14998 cold shock-like protein CspD; Provisional
Probab=30.98 E-value=1.3e+02 Score=28.54 Aligned_cols=50 Identities=24% Similarity=0.393 Sum_probs=0.0
Q ss_pred EEEEEEEee-ceE-EEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEE
Q 000227 1473 IGQIKRVES-YGL-FITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILK 1526 (1826)
Q Consensus 1473 ~G~V~~v~~-~Gv-FV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~ 1526 (1826)
.|+|+.-.. .|. ||..++++-+-++|+|.|...-...+ .+|++|...+..
T Consensus 3 ~G~Vkwfn~~kGfGFI~~~~g~~dVFvH~s~l~~~g~~~l----~~G~~V~f~~~~ 54 (73)
T PRK14998 3 TGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTL----KAGQSVRFDVHQ 54 (73)
T ss_pred CeEEEEEeCCCceEEEecCCCCccEEEEeeeecccCCCCC----CCCCEEEEEEEE
No 496
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=30.69 E-value=2.7e+02 Score=42.17 Aligned_cols=111 Identities=14% Similarity=0.046 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCcH------
Q 000227 1687 FVWIKYMAFMLSMADVEKARSIAERALQTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYCDPK------ 1760 (1826)
Q Consensus 1687 ~lWi~y~~f~l~~~ei~kAR~i~erAl~~i~~re~~e~~niW~a~l~lE~~~G~~~~e~~~~vf~~a~~~~~~~------ 1760 (1826)
..|+++|++...+|.+++|+.-+-.|.+.-.. ++.+..+++...-| +..+|..+++..+..|-+.
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r~~-------~i~~E~AK~lW~~g--d~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESRLP-------EIVLERAKLLWQTG--DELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcccc-------hHHHHHHHHHHhhc--cHHHHHHHHHHHHHhhcccccCCcc
Q ss_pred ------------HHHHHHHHHHHHcCChH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 000227 1761 ------------KVHLALLGLYERTEQNK--LADELLYKMIKKFKHSCKVIIELLSFHFT 1806 (1826)
Q Consensus 1761 ------------kv~~~~~~i~~~~~~~~--~a~~~~~~~~kk~~~~~~~w~~~~~~~~~ 1806 (1826)
++.+.+..+...+++++ ....+|..++.-.|+..+-....|++|-+
T Consensus 1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~k 1801 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDK 1801 (2382)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHH
No 497
>PF03459 TOBE: TOBE domain; InterPro: IPR005116 The TOBE domain [] (Transport-associated OB) always occurs as a dimer as the C-terminal strand of each domain is supplied by the partner. It is probably involved in the recognition of small ligands such as molybdenum (P46930 from SWISSPROT) and sulphate (P16676 from SWISSPROT), and is found in ABC transporters immediately after the ATPase domain.; GO: 0005215 transporter activity, 0005524 ATP binding, 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0006810 transport, 0043190 ATP-binding cassette (ABC) transporter complex; PDB: 1G29_2 1H9M_B 1H9J_A 1H9K_A 1H9R_B 1O7L_C 1H9S_A 1B9N_A 1B9M_A 1GUS_C ....
Probab=30.50 E-value=1e+02 Score=27.86 Aligned_cols=49 Identities=18% Similarity=0.298 Sum_probs=33.6
Q ss_pred cEEEEEEEEEecCc----eEEEecccCceEEEEeeeccCCccccCCCeEEEEE
Q 000227 876 SVIEGKVHESNDFG----VVVSFEEHSDVYGFITHHQLAGATVESGSVIQAAI 924 (1826)
Q Consensus 876 ~~V~g~V~~i~~~G----v~v~l~~~~~v~g~i~~~~ls~~~~~~G~~v~~~V 924 (1826)
..+.|+|..+...| +.+.+.+...+.+.++......=.+.+|+++.+.+
T Consensus 5 N~l~g~V~~ie~~g~~~~v~~~~~~~~~l~a~it~~~~~~L~L~~G~~V~~~i 57 (64)
T PF03459_consen 5 NQLPGTVESIENLGSEVEVTLDLGGGETLTARITPESAEELGLKPGDEVYASI 57 (64)
T ss_dssp EEEEEEEEEEEESSSEEEEEEEETTSEEEEEEEEHHHHHHCT-STT-EEEEEE
T ss_pred cEEEEEEEEEEECCCeEEEEEEECCCCEEEEEEcHHHHHHcCCCCCCEEEEEE
Confidence 46789999999999 33444443237788877766555788999988765
No 498
>PRK10943 cold shock-like protein CspC; Provisional
Probab=30.33 E-value=1.6e+02 Score=27.63 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=36.6
Q ss_pred EEEEEEEEEec---ceEEEEEcCCeEEEEeCcccCCCCCCCCCCCccCCCEEEEEEEE
Q 000227 588 ITHGWITKIEK---HGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMS 642 (1826)
Q Consensus 588 ~~~G~V~~i~~---~G~~V~~~~gv~G~vp~sel~~~~~~~~~~~~~vGq~V~vrVl~ 642 (1826)
...|+|+...+ ||.+-.-.++-+-|+|++.+.... ...+..||.|.+.+..
T Consensus 3 ~~~G~Vk~f~~~kGfGFI~~~~g~~dvFvH~s~l~~~g----~~~l~~G~~V~f~~~~ 56 (69)
T PRK10943 3 KIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNG----FKTLAEGQNVEFEIQD 56 (69)
T ss_pred ccceEEEEEeCCCCcEEEecCCCCeeEEEEhhHccccC----CCCCCCCCEEEEEEEE
Confidence 45799998864 454444446789999999995321 1357799999998875
No 499
>PRK04012 translation initiation factor IF-1A; Provisional
Probab=30.09 E-value=2.2e+02 Score=28.82 Aligned_cols=70 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred cCCCCEEEEEEEEEeeceEEEEEecCceEEEEEccccCcccccCccccCCCCCEEEEEEEEEeCCCCeEEEeeec
Q 000227 1466 LHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKS 1540 (1826)
Q Consensus 1466 ~~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sels~~~~~~~~~~~~~Gd~Vk~kVl~id~e~~rI~LslK~ 1540 (1826)
+.....+.|+|+.....+.|--.-..+..-|||++ .++.. .-.+++||.|.+.....|..+++|..-+.+
T Consensus 17 ~p~e~e~~g~V~~~lG~~~~~V~~~dG~~~la~i~----GK~Rk-~IwI~~GD~VlVe~~~~~~~kg~Iv~r~~~ 86 (100)
T PRK04012 17 MPEEGEVFGVVEQMLGANRVRVRCMDGVERMGRIP----GKMKK-RMWIREGDVVIVAPWDFQDEKADIIWRYTK 86 (100)
T ss_pred CCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEEc----hhhcc-cEEecCCCEEEEEecccCCCEEEEEEEcCH
No 500
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification]
Probab=30.03 E-value=30 Score=39.81 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=0.0
Q ss_pred ccCcccccccCccccccccCcccCCCcccccccccccCCCCccccCCCCCCC----cCcCCCCCCCCcccccchhhhhhh
Q 000227 1567 SYNRSSLLENSSVAVQDMDMESEDGGSLVLAQIESRASVPPLEVNLDDEQPD----MDNGISQNQGHTDEAKTIDEKNNR 1642 (1826)
Q Consensus 1567 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~l~~~w~~~~~~----~~~~~~~~~~~~~~~~~~~kk~~~ 1642 (1826)
+.++.++.++.+++++...++.++++..+.....+.. +|++...+ +.++++|++++++.+.....|+..
T Consensus 194 e~d~~de~ee~~~~~~~e~E~v~~D~e~e~~e~~D~E-------~~~~~~~~~~~~~s~~d~d~e~esd~de~Ee~K~~~ 266 (303)
T KOG3064|consen 194 EEDDKDENEEEEEDEDAELEEVEGDGELEAEETDDSE-------DWDGDDDSDESDDSDEDSDSEDESDSDEIEENKKES 266 (303)
T ss_pred hhcccccccccccchhhhhhhccCCcccccccccchh-------hhcccchhhhhhhcccccccccCCchhhHHHhhhhh
Q ss_pred hhhh
Q 000227 1643 HAKK 1646 (1826)
Q Consensus 1643 ~~k~ 1646 (1826)
++|+
T Consensus 267 k~kk 270 (303)
T KOG3064|consen 267 KKKK 270 (303)
T ss_pred hhcc
Done!