Query 000227
Match_columns 1826
No_of_seqs 524 out of 3508
Neff 7.3
Searched_HMMs 29240
Date Tue Mar 26 18:45:49 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000227.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_4-8//hhsearch_pdb/000227hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 1.0 1 1 256.4 27.2 213 1259-1546 6-222 (285)
2 3go5_A Multidomain protein wit 1.0 1 1 232.1 28.8 225 584-849 5-235 (285)
3 1kl9_A Eukaryotic translation 1.0 1 1 163.8 -7.1 124 1376-1506 13-139 (182)
4 4e6h_A MRNA 3'-END-processing 1.0 1 1 147.0 17.8 152 1656-1809 347-519 (679)
5 1q8k_A Eukaryotic translation 1.0 1 1 143.1 -1.1 109 1375-1487 10-121 (308)
6 1e3p_A Guanosine pentaphosphat 1.0 1 1 133.9 -6.3 130 1376-1543 607-744 (757)
7 2a19_A EIF-2- alpha, eukaryoti 1.0 1 1 133.1 -0.1 77 1465-1541 11-89 (175)
8 4e6h_A MRNA 3'-END-processing 1.0 1 1 131.5 13.2 151 1656-1811 382-558 (679)
9 3aev_A Translation initiation 1.0 1 1 130.8 -1.1 76 1466-1541 9-85 (275)
10 2uy1_A Cleavage stimulation fa 1.0 1 1 130.0 17.0 134 1672-1809 199-369 (493)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=1.00 E-value=1 Score=256.40 Aligned_cols=213 Identities=19% Similarity=0.125 Sum_probs=182.9
Q ss_pred CCCEEEEEEEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCE
Q ss_conf 99899999999974858699998994499983422243335899999888888999887999899999999842668821
Q 000227 1259 EGDIVGGRISKILSGVGGLVVQIGPHLYGRVHFTELKNICVSDPLSGYDEGQFDPLSGYDEGQFVKCKVLEISRTVRGTF 1338 (1826)
Q Consensus 1259 ~G~iv~g~V~~v~~~~~g~~V~l~~~~~G~i~~telsd~~~~~~~~~~~~~~~~p~~~f~~G~~V~~~Vl~vd~~~~g~~ 1338 (1826)
.|++++|+|++++++ |+||+++ +..|++|.+|+ |. ++|+.|.|+|+. |.+ +
T Consensus 6 ~G~~v~g~V~~~~~~--G~fv~~~-g~egllp~se~------------------~~---~vGdevev~v~~-d~~----~ 56 (285)
T 3go5_A 6 LASFIVGLIIDENDR--FYFVQKD-GQTYALAKEEG------------------QH---TVGDTVKGFAYT-DMK----Q 56 (285)
T ss_dssp TTEEEEEEEEEECSS--EEEEEET-TEEEEEEGGGC------------------CC---CTTSEEEEEEEE-CTT----S
T ss_pred CCCEEEEEEEEEECC--EEEEECC-CEEEEEEHHHC------------------CC---CCCCEEEEEEEE-CCC----C
T ss_conf 999999999999798--8999819-96999998998------------------61---459999999999-899----9
Q ss_pred EEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEE-CCEEEEEECC-CEEEEEECCCCCCCCC
Q ss_conf 9999732125788888889998888987521101113999979999999894-0529999589-7599997634699755
Q 000227 1339 HVELSLRSSLDGMSSTNSSDLSTDVDTPGKHLEKIEDLSPNMIVQGYVKNVT-SKGCFIMLSR-KLDAKVLLSNLSDGYV 1416 (1826)
Q Consensus 1339 ~i~LSlR~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~v~G~V~~v~-~~GvFV~l~~-~v~g~V~iselsd~~v 1416 (1826)
++.+|++.. .+++|+.+.|.|++++ ++|+||++|. +++++||+++++|...
T Consensus 57 r~iat~~~p---------------------------~~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~ 109 (285)
T 3go5_A 57 KLRLTTLEV---------------------------TATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKE 109 (285)
T ss_dssp CEEEECSCC---------------------------CSCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGG
T ss_pred CEEEECCCC---------------------------CCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEHHHCCCCCC
T ss_conf 899861253---------------------------45699999999999856854999989877089999899976434
Q ss_pred CCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECC-CCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECEEEE-EEECCCEE
Q ss_conf 8998667999599999999918999699997405-652221000023456678979998999985062999-98369559
Q 000227 1417 ESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTS-DSRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFI-TIENTNLV 1494 (1826)
Q Consensus 1417 ~d~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s-~~~~~~~~~~~~~~~l~~G~iv~G~V~~v~~~GvFV-~l~~~~v~ 1494 (1826)
. .+++||.+.++ +.+|+ ++||.+|+|+. ..+||.. ....+++|++|+|+|+++++||+|| .+++ ++.
T Consensus 110 ~----~~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~~~~~~~~~----~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~-g~~ 178 (285)
T 3go5_A 110 L----WPKKGDQLYIR-LEVDK-KDRIWGLLAYQEDFQRLAR----PAYNNMQNQNWPAIVYRLKLSGTFVYLPEN-NML 178 (285)
T ss_dssp G----SCCTTCEEEEE-EEECT-TSCEEEEECCHHHHHHHCC----CCCSCCTTCEEEEEEEEEETTEEEEEETTT-TEE
T ss_pred C----CCCCCCEEEEE-EEECC-CCCEEEEEHHHHHCCHHHH----HHHHCCCCCEEEEEEEEEECCCEEEEEECC-CEE
T ss_conf 6----66899999999-99999-9969998203110164464----465379999999999999179479999289-859
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCCC
Q ss_conf 9997434681101391102799989999999985899869995202333788
Q 000227 1495 GLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSSYFKND 1546 (1826)
Q Consensus 1495 Gl~h~selsd~~v~~~~~~~~~Gd~Vk~kVl~id~ek~rI~LslK~s~~~~~ 1546 (1826)
||||+||+++ .+++||.|+|+|++||++++||+||+|+..++..
T Consensus 179 Glih~SEl~~--------~l~~Gd~v~~~V~~id~~d~kI~LSlk~~~~~~~ 222 (285)
T 3go5_A 179 GFIHPSERYA--------EPRLGQVLDARVIGFREVDRTLNLSLKPRSFEML 222 (285)
T ss_dssp EEECGGGCSS--------CCCTTCEEEEEEEEEETTTTEEEEECSCCCCCCC
T ss_pred EEEEHHHCCC--------CCCCCCEEEEEEEEEECCCCEEEEEECHHHHHCC
T ss_conf 9989898426--------6999999999999998899959999374451122
No 2
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=1.00 E-value=1 Score=232.12 Aligned_cols=225 Identities=18% Similarity=0.114 Sum_probs=190.3
Q ss_pred CCCCEEEEEEEEEECCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCC
Q ss_conf 59968999999996223999993996999827566889999998786579999999999816999799997308898763
Q 000227 584 TDRLITHGWITKIEKHGCFVRFYNGVQGFAPRSELGLDPGCEPSSMYHVGQVVKCRIMSSIPASRRINLSFMMKPTRVSE 663 (1826)
Q Consensus 584 ~~G~v~~G~V~~i~~~G~~V~f~~gv~G~vp~sel~~~~~~~~~~~~~vGq~V~vrVl~vd~~~~ri~lS~k~~~~~~~~ 663 (1826)
.+|+++.|+|+++.++|+||+. ++..||+|.+++. . ++|+.+.|.|+ .|. ++|+++|.+.
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~-~g~egllp~se~~-------~---~vGdevev~v~-~d~-~~r~iat~~~------- 64 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQK-DGQTYALAKEEGQ-------H---TVGDTVKGFAY-TDM-KQKLRLTTLE------- 64 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEE-TTEEEEEEGGGCC-------C---CTTSEEEEEEE-ECT-TSCEEEECSC-------
T ss_pred CCCCEEEEEEEEEECCEEEEEC-CCEEEEEEHHHCC-------C---CCCCEEEEEEE-ECC-CCCEEEECCC-------
T ss_conf 6999999999999798899981-9969999989986-------1---45999999999-989-9989986125-------
Q ss_pred CCCCCCCCEEEEEEEEEE-CCEEEEEEEECC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEC
Q ss_conf 322567977999999991-580899998659-347986275335462210101223489987989999643898089942
Q 000227 664 DDLVKLGSLVSGVVDVVT-PNAVVVYVIAKG-YSKGTIPTEHLADHLEHATVMKSVIKPGYEFDQLLVLDNESSNLLLSA 741 (1826)
Q Consensus 664 ~~~~~vG~iv~g~V~~v~-~~g~~V~i~~~~-~v~G~I~~~hLsd~~~~~~~l~~~lk~G~~i~~vl~id~~~~~i~ls~ 741 (1826)
+.+++|+++.|+|++++ ++|+||++ +. +.+|+||.++++|... ..+++|+++...+.+|+ ++|+.+|+
T Consensus 65 -p~~~~G~~~~g~V~~v~~~~GaFVdi--G~~~~d~lvp~sel~~~~~------~~~~~Gd~v~v~l~iD~-~~Ri~ls~ 134 (285)
T 3go5_A 65 -VTATQDQFGWGRVTEVRKDLGVFVDT--GLPDKEIVVSLDILPELKE------LWPKKGDQLYIRLEVDK-KDRIWGLL 134 (285)
T ss_dssp -CCSCSSSCEEEEEEEEETTTEEEEEC--SCTTCCEEEEGGGSCSSGG------GSCCTTCEEEEEEEECT-TSCEEEEE
T ss_pred -CCCCCCCEEEEEEEEECCCCEEEEEE--CCCCCEEEEEHHHCCCCCC------CCCCCCCEEEEEEEECC-CCCEEEEE
T ss_conf -34569999999999985685499998--9877089999899976434------66689999999999999-99699982
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCCEEEEEEEEEEECEEEE-EECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 200-01200138986566899989999999996052899-9799939997188757201239333777798999999985
Q 000227 742 KYS-LINSAQQLPSDASHIHPNSVVHGYVCNIIETGCFV-RFLGRLTGFAPRSKAVDGQRADLSKTYYVGQSVRSNILDV 819 (1826)
Q Consensus 742 K~s-l~~~~~~~~~~~~~~~~G~~~~G~V~~i~~~GvfV-~f~~gi~Glvp~s~l~~~~~~~~~~~f~~Gq~V~~~V~~i 819 (1826)
|+. ..++|... .+.+++|+.+.|.|++++++|+|| .+.+++.||+|.|++++ .+++||.|+|+|+++
T Consensus 135 k~~~~~~~~~~~---~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~--------~l~~Gd~v~~~V~~i 203 (285)
T 3go5_A 135 AYQEDFQRLARP---AYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYA--------EPRLGQVLDARVIGF 203 (285)
T ss_dssp CCHHHHHHHCCC---CCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSS--------CCCTTCEEEEEEEEE
T ss_pred HHHHHCCHHHHH---HHHCCCCCEEEEEEEEEECCCEEEEEECCCEEEEEEHHHCCC--------CCCCCCEEEEEEEEE
T ss_conf 031101644644---653799999999999991794799992898599989898426--------699999999999999
Q ss_pred ECCCCEEEEEECCCCCCC--CCCHHHHHHHHH
Q ss_conf 189994999840466678--960246777779
Q 000227 820 NSETGRITLSLKQSCCSS--TDASFMQEHFLL 849 (1826)
Q Consensus 820 d~e~~rl~LSlk~~~~~~--~d~~~~~~~~~~ 849 (1826)
|++++|+.||+|+..... .++..+..||.+
T Consensus 204 d~~d~kI~LSlk~~~~~~~~~~a~~il~~L~~ 235 (285)
T 3go5_A 204 REVDRTLNLSLKPRSFEMLENDAQMILTYLES 235 (285)
T ss_dssp ETTTTEEEEECSCCCCCCCCHHHHHHHHHHHH
T ss_pred ECCCCEEEEEECHHHHHCCCHHHHHHHHHHHH
T ss_conf 88999599993744511223489999999986
No 3
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=1.00 E-value=1 Score=163.83 Aligned_cols=124 Identities=18% Similarity=0.238 Sum_probs=112.7
Q ss_pred CCCCCEEEEEEEEEECCEEEEEE--CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 99997999999989405299995--8975999976346997558998667999599999999918999699997405652
Q 000227 1376 LSPNMIVQGYVKNVTSKGCFIML--SRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDSR 1453 (1826)
Q Consensus 1376 l~~G~~v~G~V~~v~~~GvFV~l--~~~v~g~V~iselsd~~v~d~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~~~ 1453 (1826)
.++|+++.|.|++++++|+||+| .++++|+||+++++|.++.++.+.|++||.|.++|+++|+++++|.||+|....+
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~~ 92 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPE 92 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCCEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEEECCCCEEEEEEEECCCC
T ss_conf 99989999999999644799998248995899898997774327998806799999999999978899799999516827
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEEE-CEEEEEEECCCEEEEEECCCCCCCC
Q ss_conf 2210000234566789799989999850-6299998369559999743468110
Q 000227 1454 TASQSEINNLSNLHVGDIVIGQIKRVES-YGLFITIENTNLVGLCHVSELSEDH 1506 (1826)
Q Consensus 1454 ~~~~~~~~~~~~l~~G~iv~G~V~~v~~-~GvFV~l~~~~v~Gl~h~selsd~~ 1506 (1826)
||... ...++.|+.+.|.|+++++ || |.|++ ++.||+|+|++++.+
T Consensus 93 p~~~~----~~~~~~g~~v~g~v~~i~~~~g--v~l~~-giegl~h~s~~~~~~ 139 (182)
T 1kl9_A 93 EAIKC----EDKFTKSKTVYSILRHVAEVLE--YTKDE-QLESLFQRTAWVFDD 139 (182)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHTT--CCSHH-HHHHHHHHTHHHHHH
T ss_pred HHHHH----HHHCCCCCEEEEEEEECHHHCC--CCCCC-CHHHEEEEEECCHHH
T ss_conf 48999----9866688989999999545469--95667-820167753411335
No 4
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=146.95 Aligned_cols=152 Identities=13% Similarity=0.073 Sum_probs=128.3
Q ss_pred HHHHHHHHCCCCCCCCH-HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----------CCHH--
Q ss_conf 99999973025899997-899999881999636899999999922899999999999986226-----------5103--
Q 000227 1656 IRAAEERLLEKDAPRTP-DEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTIN-----------IREE-- 1721 (1826)
Q Consensus 1656 ~~~~~~~~~~~~~p~s~-~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~~AR~i~erAl~~i~-----------~re~-- 1721 (1826)
+..++..+..++.++++ ..|+|++..+|.+..||++|+.|+.+.+++++||+|++++++.++ ..++
T Consensus 347 ~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~ 426 (679)
T 4e6h_A 347 FNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAI 426 (679)
T ss_dssp HHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 99999998628678999999999998689877999999999998488999999999999887877666641167412455
Q ss_pred ----HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-C-CCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHCCCCH
Q ss_conf ----45899999999999970999978999999999931-9-949999999999998099-5899999999999817997
Q 000227 1722 ----NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQY-C-DPKKVHLALLGLYERTEQ-NKLADELLYKMIKKFKHSC 1794 (1826)
Q Consensus 1722 ----~e~~niW~a~l~LE~~~g~~~~e~~~~vf~~a~~~-~-~~~~v~~~~~~i~~~~~~-~~~a~e~~~~~~kk~~~~~ 1794 (1826)
..-..+|++|++||...| ..++|+.+|++|++. + ...++|+.++.++.+.++ .+.||.+|+.++++||.++
T Consensus 427 ~~~~~~~~~vWi~y~~~erR~~--~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~ 504 (679)
T 4e6h_A 427 NQLKSKLTYVYCVYMNTMKRIQ--GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDG 504 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 5411336999999999998708--88999999999997368988699999999999968988999999999998789953
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999998872343
Q 000227 1795 KVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1795 ~~W~~~~~~~~~~~~ 1809 (1826)
.+|+.|+.|+...+.
T Consensus 505 ~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 505 EYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999980897
No 5
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=1.00 E-value=1 Score=143.09 Aligned_cols=109 Identities=16% Similarity=0.208 Sum_probs=96.6
Q ss_pred CCCCCCEEEEEEEEEECCEEEEEEC--CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCCC
Q ss_conf 3999979999999894052999958--97599997634699755899866799959999999991899969999740565
Q 000227 1375 DLSPNMIVQGYVKNVTSKGCFIMLS--RKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSDS 1452 (1826)
Q Consensus 1375 ~l~~G~~v~G~V~~v~~~GvFV~l~--~~v~g~V~iselsd~~v~d~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~~ 1452 (1826)
.+++|+++.|.|++++++|+||+|+ ++++|+||+++++|.++.++.+.|++||.|.++|+++|+++++|.||+|....
T Consensus 10 ~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~ 89 (308)
T 1q8k_A 10 FPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSP 89 (308)
T ss_dssp CCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCH
T ss_pred CCCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCCCCCCCHHHHCCCCCEEEEEEEEEECCCCEEEEEEEECCC
T ss_conf 99999999999999967689999878898699998577276433698882689999999999991778879999986355
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEEEEEEE-CEEEEE
Q ss_conf 22210000234566789799989999850-629999
Q 000227 1453 RTASQSEINNLSNLHVGDIVIGQIKRVES-YGLFIT 1487 (1826)
Q Consensus 1453 ~~~~~~~~~~~~~l~~G~iv~G~V~~v~~-~GvFV~ 1487 (1826)
+||... ...+++|+++.|+|+++.+ ||+|+.
T Consensus 90 ~p~~~~----~~~~~~G~~v~G~V~~v~~~~G~fi~ 121 (308)
T 1q8k_A 90 EEAIKC----EDKFTKSKTVYSILRHVAEVLEYTKD 121 (308)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred CHHHHH----HHHCCCCCEEEEEEEECCCCCCCCCC
T ss_conf 737889----99706898037999993445698367
No 6
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=1.00 E-value=1 Score=133.92 Aligned_cols=130 Identities=19% Similarity=0.363 Sum_probs=102.4
Q ss_pred CCCCCEE--EEEEEE--EECCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCC
Q ss_conf 9999799--999998--940529999589759999763469975589986679995999999999189996999974056
Q 000227 1376 LSPNMIV--QGYVKN--VTSKGCFIMLSRKLDAKVLLSNLSDGYVESPEKEFPIGKLVAGRVLSVEPLSKRVEVTLKTSD 1451 (1826)
Q Consensus 1376 l~~G~~v--~G~V~~--v~~~GvFV~l~~~v~g~V~iselsd~~v~d~~~~f~vGq~V~~kVl~vd~e~~rI~lSlk~s~ 1451 (1826)
-+.|+++ .|++.+ +.++|+||+++. +|.|+++..++...+...+ ++.. +
T Consensus 607 ~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~--dG~v~Is~~~~~~~~~a~~--------------------~i~~-i---- 659 (757)
T 1e3p_A 607 DKIGEVIGPKRQMINQIQEDTGAEITIED--DGTIYIGAADGPAAEAARA--------------------TING-I---- 659 (757)
T ss_dssp --------------CTTCCCCCSCC----------CCCBSSHHHHCC---------------------------------
T ss_pred HHEEHCCCCCCEEEEHHHHHHCCEEEECC--CCEEEEECCCHHHHHHHHH--------------------HHHH-H----
T ss_conf 87100026560110215685397899668--8509993688899999999--------------------9987-3----
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEEEECEEEEEEECCCEEEEEECCCC----CCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 522210000234566789799989999850629999836955999974346----8110139110279998999999998
Q 000227 1452 SRTASQSEINNLSNLHVGDIVIGQIKRVESYGLFITIENTNLVGLCHVSEL----SEDHVDNIETIYRAGEKVKVKILKV 1527 (1826)
Q Consensus 1452 ~~~~~~~~~~~~~~l~~G~iv~G~V~~v~~~GvFV~l~~~~v~Gl~h~sel----sd~~v~~~~~~~~~Gd~Vk~kVl~i 1527 (1826)
.+ ..++++|+++.|+|+++.+||+||.|.+ +++||+|+|++ ++.++.++.+.|++||.|+++|+++
T Consensus 660 ~~---------p~~~~vG~i~~G~V~~i~~fGaFV~l~~-g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~v 729 (757)
T 1e3p_A 660 AN---------PTSPEVGERILGSVVKTTTFGAFVSLLP-GKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEI 729 (757)
T ss_dssp ----------------------CBEEECC-CSCEECCC----CCCCC-------------------CCSSCBCCCCCCCC
T ss_pred CC---------HHHCCCCCEEEEEEEECCCCEEEEEECC-CCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf 26---------3124436689999997014379999769-9179999688153447775268400269999999999999
Q ss_pred ECCCCEEEEEEECCCC
Q ss_conf 5899869995202333
Q 000227 1528 DKEKRRISLGMKSSYF 1543 (1826)
Q Consensus 1528 d~ek~rI~LslK~s~~ 1543 (1826)
|. ++||+||+|+...
T Consensus 730 d~-~grI~LS~k~~~~ 744 (757)
T 1e3p_A 730 DS-RGKLSLIPVIEGE 744 (757)
T ss_dssp CS-SCC----------
T ss_pred CC-CCCEEEEEECCCC
T ss_conf 89-9978999802887
No 7
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=1.00 E-value=1 Score=133.06 Aligned_cols=77 Identities=27% Similarity=0.498 Sum_probs=68.3
Q ss_pred CCC-CCCEEEEEEEEEEECEEEEEEE-CCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECC
Q ss_conf 667-8979998999985062999983-6955999974346811013911027999899999999858998699952023
Q 000227 1465 NLH-VGDIVIGQIKRVESYGLFITIE-NTNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1826)
Q Consensus 1465 ~l~-~G~iv~G~V~~v~~~GvFV~l~-~~~v~Gl~h~selsd~~v~~~~~~~~~Gd~Vk~kVl~id~ek~rI~LslK~s 1541 (1826)
.++ +|+++.|+|+++++||+||.|+ ..++.||+|+|++++.++.++.+.|++||.|+|+|+++|.+++||+||+|..
T Consensus 11 ~~p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~ 89 (175)
T 2a19_A 11 KYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRV 89 (175)
T ss_dssp SSCCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTC
T ss_pred CCCCCCCEEEEEEEEEECCEEEEEECCCCCCEEEEEHHHCCCCCCCCHHHCCCCCCEEEEEEEEEECCCCEEEEEEEEC
T ss_conf 0999989999999999621699998578993899898995874327988817899999999999988889599999766
No 8
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=1.00 E-value=1 Score=131.46 Aligned_cols=151 Identities=13% Similarity=0.175 Sum_probs=120.2
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHH-----------CCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999973025899997899999881-----------999-----------63689999999992289999999999998
Q 000227 1656 IRAAEERLLEKDAPRTPDEFERLVRS-----------SPN-----------SSFVWIKYMAFMLSMADVEKARSIAERAL 1713 (1826)
Q Consensus 1656 ~~~~~~~~~~~~~p~s~~~fer~l~~-----------~p~-----------ss~lWi~y~~f~l~~~ei~~AR~i~erAl 1713 (1826)
+..++.....++..+++..|++++.. .|. .+.+||.||.|+.+++++++||+|++||+
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999999848899999999999988787766664116741245554113369999999999987088899999999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-
Q ss_conf 62265103458999999999999709999789999999999-3199499999999999980995899999999999817-
Q 000227 1714 QTINIREENEKLNIWVAYFNLENEYGNPPEEAVVKVFQRAL-QYCDPKKVHLALLGLYERTEQNKLADELLYKMIKKFK- 1791 (1826)
Q Consensus 1714 ~~i~~re~~e~~niW~a~l~LE~~~g~~~~e~~~~vf~~a~-~~~~~~~v~~~~~~i~~~~~~~~~a~e~~~~~~kk~~- 1791 (1826)
+..+. -.+.+|++++.||...|+ +.++|+++|++++ .+++...+|+.|++++...++.++||.+|+++++.++
T Consensus 462 ~~~~~----~~~~lyi~~A~lE~~~~~-d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 462 RLKKL----VTPDIYLENAYIEYHISK-DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HTGGG----SCTHHHHHHHHHHHTTTS-CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHCCC----CCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 73689----886999999999999689-8899999999999878995399999999998089778999999999871688
Q ss_pred --CCHHHHHHHHHHHHHCCCCC
Q ss_conf --99799999999887234333
Q 000227 1792 --HSCKVIIELLSFHFTSILSI 1811 (1826)
Q Consensus 1792 --~~~~~W~~~~~~~~~~~~~~ 1811 (1826)
....+|..|++|+.+.|+..
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~ 558 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLN 558 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHHHHHHHHHCCCHH
T ss_conf 7899999999999999869999
No 9
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=1.00 E-value=1 Score=130.83 Aligned_cols=76 Identities=29% Similarity=0.596 Sum_probs=65.4
Q ss_pred CCCCCEEEEEEEEEEECEEEEEEEC-CCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECC
Q ss_conf 6789799989999850629999836-955999974346811013911027999899999999858998699952023
Q 000227 1466 LHVGDIVIGQIKRVESYGLFITIEN-TNLVGLCHVSELSEDHVDNIETIYRAGEKVKVKILKVDKEKRRISLGMKSS 1541 (1826)
Q Consensus 1466 l~~G~iv~G~V~~v~~~GvFV~l~~-~~v~Gl~h~selsd~~v~~~~~~~~~Gd~Vk~kVl~id~ek~rI~LslK~s 1541 (1826)
.++|+++.|+|+++.+||+||.|++ .++.||||+|++++.++.++.+.|++||.|.++|+++|.++++|+||+|..
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~ 85 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRV 85 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTC
T ss_pred CCCCCEEEEEEEEEECCEEEEEECCCCCEEEEEEHHHCCCCCCCCHHHCCCCCCEEEEEEEEEECCCCEEEEEEEEC
T ss_conf 99989999999999776899998788982899998994863213877504799999999999977788799999535
No 10
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=1.00 E-value=1 Score=129.97 Aligned_cols=134 Identities=13% Similarity=0.051 Sum_probs=116.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH----------H--------------------
Q ss_conf 7899999881999636899999999922899999999999986226510----------3--------------------
Q 000227 1672 PDEFERLVRSSPNSSFVWIKYMAFMLSMADVEKARSIAERALQTINIRE----------E-------------------- 1721 (1826)
Q Consensus 1672 ~~~fer~l~~~p~ss~lWi~y~~f~l~~~ei~~AR~i~erAl~~i~~re----------~-------------------- 1721 (1826)
...|+|++..+|+++.+|++|++|+++.+++++||.|++||+.+ |... +
T Consensus 199 ~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~ 277 (493)
T 2uy1_A 199 HFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESA 277 (493)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC-------
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHH
T ss_conf 99999998728998999999999998759989999999998718-99699999987651056899999999986111012
Q ss_pred -----HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHCCCCH
Q ss_conf -----458999999999999709999789999999999319-94999999999999809-95899999999999817997
Q 000227 1722 -----NEKLNIWVAYFNLENEYGNPPEEAVVKVFQRALQYC-DPKKVHLALLGLYERTE-QNKLADELLYKMIKKFKHSC 1794 (1826)
Q Consensus 1722 -----~e~~niW~a~l~LE~~~g~~~~e~~~~vf~~a~~~~-~~~~v~~~~~~i~~~~~-~~~~a~e~~~~~~kk~~~~~ 1794 (1826)
.....+|+.|+++|...+ ..++|+.+|++| +.+ ....+|+.++.++...+ ..+.||.+|+.+++.||.++
T Consensus 278 ~~~~~~~~~~lw~~y~~~~~r~~--~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~ 354 (493)
T 2uy1_A 278 EKVFSKELDLLRINHLNYVLKKR--GLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST 354 (493)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCH
T ss_pred HHHCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 23204561899999999998717--889999999986-277888599999999999878996899999999998789978
Q ss_pred HHHHHHHHHHHHCCC
Q ss_conf 999999998872343
Q 000227 1795 KVIIELLSFHFTSIL 1809 (1826)
Q Consensus 1795 ~~W~~~~~~~~~~~~ 1809 (1826)
.+|+.|+.|+...++
T Consensus 355 ~~~~~yid~e~~~~~ 369 (493)
T 2uy1_A 355 LLKEEFFLFLLRIGD 369 (493)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999987598
Done!