BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000228
(1825 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 169/293 (57%), Gaps = 10/293 (3%)
Query: 594 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFERL-TS 652
++IDEAAQ E S IPL+ G V++GD QLP V SK S + G+ +SL+ R+
Sbjct: 1513 VIIDEAAQAVELSSIIPLKY-GCESCVMVGDPNQLPPTVLSKTSAKFGYSQSLYVRMFKQ 1571
Query: 653 LNHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKQYLTGTEFGTYSFINI 712
N S LL+IQYRM+P IS FP+ FY +++LDG N+ S + + + G Y F N+
Sbjct: 1572 HNESACLLSIQYRMNPEISRFPSKFFYNSKLLDGPNM-SAVTSRPWHEDPQLGIYRFFNV 1630
Query: 713 IGGREDFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIRKKIGF 772
G S N+ E S ++ + ++L + ++ + IGVV+PY +QV +R +
Sbjct: 1631 HGTEAFSNSKSLYNVEEASFILLLYERLIQCYLNIDFEGKIGVVTPYRSQVQQLRSQFQR 1690
Query: 773 EYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQRVNVALTRARHCLW 832
+Y + + + ++DGFQG E+DIII S VR + G IGF+ +R+NVALTRA+ L+
Sbjct: 1691 KYGSIIFKHLDIHTVDGFQGQEKDIIIFSCVRSSMSGGIGFLQDLRRLNVALTRAKSSLY 1750
Query: 833 ILGSERTLISSESIWGALVCDAKARQCFFNADEERNLAKARLEVSKELVEIGA 885
I+G+ + L+ E I+ +L+ DAK R + R+L+ + + SK + +
Sbjct: 1751 IVGNSKPLM-QEDIFYSLIEDAKTRGVW------RDLSANQFKNSKSISNVST 1796
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 23/87 (26%)
Query: 257 LNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTVSMLLLTLL------------- 303
+NE Q A+ A G LI GPPGTGKTKT+ ++ +L
Sbjct: 1271 VNEPQAYAIYAS------SVNDGFTLIQGPPGTGKTKTILGMIGAVLTSSSQGLQFNVPG 1324
Query: 304 ----RIKCRTLACTPTNVAITELASRV 326
K + L C P+N AI E+ R+
Sbjct: 1325 QTRKTSKNKILICAPSNAAIDEILLRI 1351
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 163/306 (53%), Gaps = 7/306 (2%)
Query: 567 FKRASLFFSTAS-SSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDE 625
+ A++ F+T S S L + + + ++IDEAAQ E + IPL L+GD
Sbjct: 459 LEEAAIVFATLSFSGSALLAKSNRGFDVVIIDEAAQAVEPATLIPLA-TRCKQVFLVGDP 517
Query: 626 CQLPAMVESKISDEAGFGRSLFERLTSLNHSKHLLNIQYRMHPSISLFPNLQFYRNQILD 685
QLPA V S ++ ++G+G S+FERL + +L QYRMHP I FP+ QFY + D
Sbjct: 518 KQLPATVISTVAQDSGYGTSMFERLQKAGYPVKMLKTQYRMHPEIRSFPSKQFYEGALED 577
Query: 686 GANVKSKSYEKQYLTGTEFGTYSFINIIGGRED---FIYHSCRNIVEVSAVIKILQKLYK 742
G+++++++ + + FG + F +I G+E S N+ EV V+ I +L
Sbjct: 578 GSDIEAQT-TRDWHKYRCFGPFCFFDIHEGKESQHPGATGSRVNLDEVEFVLLIYHRLVT 636
Query: 743 AWVGSKQKVSIGVVSPYTAQVVAIRKKIGFEYENKDGFTVKVKSIDGFQGGEEDIIIIST 802
+ K + ++SPY QV + + + + V + ++DGFQG E+D+ I S
Sbjct: 637 MYPELKSSSQLAIISPYNYQVKTFKDRFKEMFGTEAEKVVDINTVDGFQGREKDVAIFSC 696
Query: 803 VRCNTGGSIGFISKPQRVNVALTRARHCLWILGSERTLISSESIWGALVCDAKARQCFFN 862
VR N G IGF+S +R+NV +TRA+ + ++GS TL S+ +W L+ A+ R F
Sbjct: 697 VRANENGQIGFLSNSRRMNVGITRAKSSVLVVGSAATL-KSDPLWKNLIESAEQRNRLFK 755
Query: 863 ADEERN 868
+ N
Sbjct: 756 VSKPLN 761
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 19/111 (17%)
Query: 204 NKRIWNSLHMCGNWKVITQVLGTDSV----VDERCELCSVQRKGQWDEKF---GPS---F 253
+KR++ SL +CG +I + + SV + + + G DE + GP F
Sbjct: 196 DKRVF-SLKLCGLSTIIREYIALRSVSSLPFKDLIFTAAEKSCGFGDEAWKISGPLNEFF 254
Query: 254 SSTLNESQVGAMLACLRRLDCG-HRSGVELIWGPPGTGKTKTVSMLLLTLL 303
+ LN+SQ A +D G R LI GPPGTGKT+T+ +L ++
Sbjct: 255 NENLNKSQKEA-------IDVGLSRKSFVLIQGPPGTGKTQTILSILGAIM 298
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 159/274 (58%), Gaps = 14/274 (5%)
Query: 594 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFERLTSL 653
++IDEA Q E S IPL+ G +++GD QLP V S + + +SLF R+
Sbjct: 1587 VIIDEACQCTELSSIIPLRYGG-KRCIMVGDPNQLPPTVLSGAASNFKYNQSLFVRMEK- 1644
Query: 654 NHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKQYLTGTEFGTYSFINII 713
N S +LL++QYRMHPSIS FP+ +FY+ ++ DG + + ++ + Y F +II
Sbjct: 1645 NSSPYLLDVQYRMHPSISKFPSSEFYQGRLKDGPGMDILN-KRPWHQLEPLAPYKFFDII 1703
Query: 714 GGRED--FIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKVS----IGVVSPYTAQVVAIR 767
GR++ S N+ E+ I+++ L++ + K+ IG++SPY Q+ +R
Sbjct: 1704 SGRQEQNAKTMSYTNMEEIRVAIELVDYLFRKF---DNKIDFTGKIGIISPYREQMQKMR 1760
Query: 768 KKIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRC-NTGGSIGFISKPQRVNVALTR 826
K+ + ++ +IDGFQG E++II+IS VR +T S+GF+ +R+NVALTR
Sbjct: 1761 KEFARYFGGMINKSIDFNTIDGFQGQEKEIILISCVRADDTKSSVGFLKDFRRMNVALTR 1820
Query: 827 ARHCLWILGSERTLISSESIWGALVCDAKARQCF 860
A+ +W+LG +R+L S+ +W L+ DAK R C
Sbjct: 1821 AKTSIWVLGHQRSLAKSK-LWRDLIEDAKDRSCL 1853
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 159/271 (58%), Gaps = 6/271 (2%)
Query: 591 LNF--LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFE 648
LNF ++IDEAAQ E ++ IPL+ G +L+GD QLP V SK + + +SLF
Sbjct: 1370 LNFSTVIIDEAAQAVELDTIIPLRY-GAKKCILVGDPNQLPPTVLSKKAASLNYSQSLFV 1428
Query: 649 RLT-SLNHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKQYLTGTEFGTY 707
R+ + ++ LL+IQYRMHP IS FP+ +FY +++ DG N+ K+ ++ + +F Y
Sbjct: 1429 RIQKNFSNQMCLLSIQYRMHPDISHFPSKKFYDSRLEDGDNMAEKT-QQVWHVNPKFTQY 1487
Query: 708 SFINIIGGREDFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIR 767
++ G S N+ EV ++ ++ +L + IGV++PY +Q+ +R
Sbjct: 1488 RLFDVRGKERTSNTMSTYNLEEVEYLVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELR 1547
Query: 768 KKIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQRVNVALTRA 827
+ +Y T+ ++++DGFQG E+DII S V+ + IGF+ +R+NVALTRA
Sbjct: 1548 RAFKVKYGKSFMSTIDIQTVDGFQGQEKDIIFFSCVKSYSKHGIGFLRDFRRLNVALTRA 1607
Query: 828 RHCLWILGSERTLISSESIWGALVCDAKARQ 858
R L I+G+ TL ++ +WG+LV DA +R+
Sbjct: 1608 RSSLLIIGNMETL-KTDDLWGSLVDDALSRK 1637
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 75/181 (41%), Gaps = 48/181 (26%)
Query: 257 LNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKT----VSMLLLTLLRI------- 305
+NE Q A++ L +G LI GPPGTGKTKT +S LL+ L R
Sbjct: 1130 VNEPQAKAIMCAL------DNNGFTLIQGPPGTGKTKTIIGIISALLVDLSRYHITRPNQ 1183
Query: 306 -------KCRTLACTPTNVAITELASRVLK--LVKESYKRDSRSNTPICPLGDILLFGNK 356
K + L C P+N A+ E+ R+ + L++ K R ++ GN
Sbjct: 1184 QSKSTESKQQILLCAPSNAAVDEVLLRLKRGFLLENGEKYIPR----------VVRIGNP 1233
Query: 357 DRLKVNPGFEEIYLNYRI-KKLREC---------FAPLSGWRHCFSSMIDLLEDCVSQYH 406
+ +N ++ L Y+ K+L E L+ WR F I +E+ Q
Sbjct: 1234 E--TINVSVRDLSLEYQTEKQLLEVNQGAIDLGSLQELTRWRDTFYDCIQKIEELEKQID 1291
Query: 407 I 407
+
Sbjct: 1292 V 1292
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 160 bits (406), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 110/319 (34%), Positives = 165/319 (51%), Gaps = 30/319 (9%)
Query: 560 LVLEDFCFKRASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHA 619
LVL++ +L FS AS K+ + ++IDEAAQ E+ + IP+Q G
Sbjct: 558 LVLDEADIVATTLSFSGASLLTKMAG----GFDIVIIDEAAQAVETSTLIPIQ-HGCKKV 612
Query: 620 VLIGDECQLPAMVESKISDEAGFGRSLFERLTSLNHSKHLLNIQYRMHPSISLFPNLQFY 679
VL+GD QLPA + S ++ + + +SLF+RL N S H+L QYRMH I FP+ FY
Sbjct: 613 VLVGDPKQLPATIISPLAIKYKYDQSLFQRLQEKN-SPHMLTTQYRMHSLIRAFPSRHFY 671
Query: 680 RNQILDGANVKSKSYEKQYLTGTEFGTYSFINI-------IGGREDFIYHSCRNIVEVSA 732
++ +LDG N+ S++ Y + FG F ++ GG F H C+
Sbjct: 672 QDLLLDGPNIPSRA--THYHSNPFFGPLVFYDLSWSTETKPGGGSVFNEHECK------M 723
Query: 733 VIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIRKKIGFEYENKDGFTVKVKSIDGFQG 792
+ + Q K + IG++SPY QV+A+R+ ++N G + + ++DGFQG
Sbjct: 724 AMYLFQLFTKVYPDEDFASRIGIISPYRQQVLALREI----FKNYPG--ISIDTVDGFQG 777
Query: 793 GEEDIIIISTVRCNT--GGSIGFISKPQRVNVALTRARHCLWILGSERTLISSESIWGAL 850
E +III S VR G IGF+S +R+NVALTR R L ILG+ + L S W L
Sbjct: 778 REREIIIFSCVRAPVEEGAGIGFLSDVRRMNVALTRPRSSLLILGNTKAL-SINKDWNEL 836
Query: 851 VCDAKARQCFFNADEERNL 869
+ + Q +++ L
Sbjct: 837 IQHTQNNQQLIPVTKDQPL 855
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 253 FSSTLNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTVSMLLLTLL 303
FSST N+SQ+ A+ + L + + LI GPPGTGKT + L+ LL
Sbjct: 331 FSSTYNDSQLNALTSAL------EGNAITLIQGPPGTGKTHVILGLISVLL 375
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 101/281 (35%), Positives = 148/281 (52%), Gaps = 29/281 (10%)
Query: 594 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFERLTSL 653
++IDE+ Q E E IPL L G+ VL+GD CQL ++ K + AG +SLFERL +L
Sbjct: 653 VLIDESTQATEPECLIPLVL-GVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVTL 711
Query: 654 NHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKQYLTGTEF-----GTYS 708
L +QYRMHP++S FP+ FY + +G + E+Q TG +F
Sbjct: 712 GIKPIRLQVQYRMHPALSEFPSNSFYEGTLQNGVTI----IERQ-TTGIDFPWPVPNRPM 766
Query: 709 FINIIGGREDFIYHSCR--NIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAI 766
F + G+E+ N E + V K++ K+ V Q IGV++PY Q I
Sbjct: 767 FFYVQLGQEEISASGTSYLNRTEAANVEKLVTAFLKSGVVPSQ---IGVITPYEGQRAYI 823
Query: 767 RKKIGFEYENKDGF-------TVKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQR 819
Y ++G ++V S+D FQG E+D II+S VR N IGF++ P+R
Sbjct: 824 -----VNYMARNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRR 878
Query: 820 VNVALTRARHCLWILGSERTLISSESIWGALVCDAKARQCF 860
+NVALTRAR+ + ILG+ + L S + +W L+ K +C
Sbjct: 879 LNVALTRARYGIVILGNPKVL-SKQPLWNGLLTHYKEHECL 918
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 12/102 (11%)
Query: 248 KFGPSFSSTLNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTVSMLLLTLLRI-K 306
+FG LN SQV A+ + L++ + LI GPPGTGKT T + ++ + + +
Sbjct: 480 RFGVPGLPELNASQVNAVKSVLQKP-------ISLIQGPPGTGKTVTSAAIVYHMAKQGQ 532
Query: 307 CRTLACTPTNVAITELASRV----LKLVKESYKRDSRSNTPI 344
+ L C P+NVA+ +LA ++ LK+V+ K ++P+
Sbjct: 533 GQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPV 574
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 151 bits (381), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 97/272 (35%), Positives = 150/272 (55%), Gaps = 11/272 (4%)
Query: 594 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQL-PAMVESKISDEAGFGRSLFERLTS 652
++IDE+ Q E E IP+ + G +L+GD QL P ++E K +D AG +SLFERL S
Sbjct: 569 VLIDESTQASEPECLIPI-VKGAKQVILVGDHQQLGPVILERKAAD-AGLKQSLFERLIS 626
Query: 653 LNHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKQYLTGTEFGTYSFINI 712
L H L +QYRM+P +S FP+ FY + +G ++ ++ G
Sbjct: 627 LGHVPIRLEVQYRMNPYLSEFPSNMFYEGSLQNGVTIEQRTVPNSKFPWPIRGIPMMFWA 686
Query: 713 IGGREDFIYH--SCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIRKKI 770
GRE+ + S N +E +I+ KL++ V +Q IGV++PY Q I + +
Sbjct: 687 NYGREEISANGTSFLNRIEAMNCERIITKLFRDGVKPEQ---IGVITPYEGQRAYILQYM 743
Query: 771 GFEYE-NKDGFT-VKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQRVNVALTRAR 828
+KD + V+V S+D FQG E+D II+S VR N +IGF+ P+R+NV LTRA+
Sbjct: 744 QMNGSLDKDLYIKVEVASVDAFQGREKDYIILSCVRANEQQAIGFLRDPRRLNVGLTRAK 803
Query: 829 HCLWILGSERTLISSESIWGALVCDAKARQCF 860
+ L ILG+ R+L + ++W L+ + + C
Sbjct: 804 YGLVILGNPRSL-ARNTLWNHLLIHFREKGCL 834
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 15/117 (12%)
Query: 251 PSFSSTLNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTVSMLLLTLLRI-KCRT 309
P+F+ LN SQ A+ L+R + LI GPPGTGKT T + ++ L +I K R
Sbjct: 404 PNFAQ-LNSSQSNAVSHVLQR-------PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRI 455
Query: 310 LACTPTNVAITELASRV----LKLVKESYK--RDSRSNTPICPLGDILLFGNKDRLK 360
L C P+NVA+ LA+++ LK+V+ + K D S+ L +++ G K LK
Sbjct: 456 LVCAPSNVAVDHLAAKLRDLGLKVVRLTAKSREDVESSVSNLALHNLVGRGAKGELK 512
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1
SV=2
Length = 1124
Score = 149 bits (375), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 157/307 (51%), Gaps = 15/307 (4%)
Query: 594 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFERLTSL 653
++IDE+ Q E E +P+ L G +L+GD CQL +V K + +AG +SLFERL L
Sbjct: 639 ILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 697
Query: 654 NHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKQYLTGTEFGTYSFINII 713
L +QYRMHP++S FP+ FY + +G + + + F +
Sbjct: 698 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVT 757
Query: 714 GGREDFIYH--SCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIRKKIG 771
G+E+ S N E + V KI KL KA Q IG+++PY Q + + +
Sbjct: 758 QGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYLVQYMQ 814
Query: 772 F--EYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQRVNVALTRARH 829
F K V++ S+D FQG E+D II+S VR N IGF++ P+R+NVALTRAR+
Sbjct: 815 FSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARY 874
Query: 830 CLWILGSERTLISSESIWGALVCDAKARQCFFNADEERNLAKARLEVSKE-----LVEIG 884
+ I+G+ + L S + +W L+ K ++ NL ++ ++ SK V G
Sbjct: 875 GVIIVGNPKAL-SKQPLWNHLLSYYKEQKALVEG-PLNNLRESLMQFSKPRKLVNTVNPG 932
Query: 885 AESLTST 891
A +T+
Sbjct: 933 ARFMTTA 939
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 235 ELCSVQRKGQWDEKFGPSFSSTLNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKT 294
E+ V K Q ++F LN SQV A+ L+R + LI GPPGTGKT T
Sbjct: 455 EVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVT 507
Query: 295 VSMLLLTLLRI-KCRTLACTPTNVAITELASRV----LKLVKESYKRDSRSNTPI 344
+ ++ L R L C P+N+A+ +L ++ LK+V+ K ++P+
Sbjct: 508 SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPV 562
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1
SV=2
Length = 1129
Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 140/262 (53%), Gaps = 9/262 (3%)
Query: 594 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFERLTSL 653
++IDE+ Q E E +P+ L G +L+GD CQL +V K + +AG +SLFERL L
Sbjct: 644 ILIDESTQATEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVL 702
Query: 654 NHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKQYLTGTEFGTYSFINII 713
L +QYRMHP++S FP+ FY + +G + + + F +
Sbjct: 703 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVT 762
Query: 714 GGREDFIYH--SCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIRKKIG 771
G+E+ S N E + V KI KL KA Q IG+++PY Q + + +
Sbjct: 763 QGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQ---IGIITPYEGQRSYLVQYMQ 819
Query: 772 F--EYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQRVNVALTRARH 829
F K V++ S+D FQG E+D II+S VR N IGF++ P+R+NVALTRAR+
Sbjct: 820 FSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARY 879
Query: 830 CLWILGSERTLISSESIWGALV 851
+ I+G+ + L S + +W L+
Sbjct: 880 GVIIVGNPKAL-SKQPLWNHLL 900
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 242 KGQWDEKFGPSFSSTLNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTVSMLLLT 301
K Q ++F LN SQV A+ L+R + LI GPPGTGKT T + ++
Sbjct: 467 KCQLPKRFTAQGLPDLNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVTSATIVYH 519
Query: 302 LLRI-KCRTLACTPTNVAITELASRV----LKLVKESYKRDSRSNTPI 344
L R L C P+N+A+ +L ++ LK+V+ K ++P+
Sbjct: 520 LARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPV 567
>sp|Q9HEH1|RENT1_NEUCR Regulator of nonsense transcripts 1 homolog OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=2E4.130 PE=3 SV=1
Length = 1093
Score = 147 bits (371), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 96/272 (35%), Positives = 146/272 (53%), Gaps = 11/272 (4%)
Query: 594 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFERLTSL 653
++IDE+ Q E E IPL L G VL+GD QL ++ +K + +AG +SLFERL L
Sbjct: 618 VLIDESTQSAEPECMIPLVL-GCKQVVLVGDHKQLGPVIMNKKAAKAGLNQSLFERLVKL 676
Query: 654 NHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSK-SYEKQYLTGTEFGTYSFINI 712
+ L +QYRMHP +S FP+ FY + +G + + + F +
Sbjct: 677 QFTPIRLKVQYRMHPCLSEFPSNMFYEGSLQNGVTAAERLRKDVDFPWPVPETPMMFWSN 736
Query: 713 IGGRE-DFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQ---VVAIRK 768
+G E S N E + V KI+ + +KA V + IGV++PY Q +V +
Sbjct: 737 LGNEEISASGTSYLNRTEAANVEKIVTRFFKAGV---KPADIGVITPYEGQRSYIVNTMQ 793
Query: 769 KIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQRVNVALTRAR 828
G ++ + V+V S+D FQG E+D I++S VR N IGF+S P+R+NVALTRA+
Sbjct: 794 NTG-TFKKESYREVEVASVDAFQGREKDFIVLSCVRSNENQGIGFLSDPRRLNVALTRAK 852
Query: 829 HCLWILGSERTLISSESIWGALVCDAKARQCF 860
+ L I+G+ + L E +W L+ K ++C
Sbjct: 853 YGLVIIGNPKVLCKHE-LWHHLLVHFKDKKCL 883
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 12/84 (14%)
Query: 257 LNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTVSMLLLTLLRI-KCRTLACTPT 315
LN SQ+ A+ L + + LI GPPGTGKT T + ++ L ++ + L C P+
Sbjct: 456 LNASQIAAIKQVLS-------NPLSLIQGPPGTGKTVTSATIIYHLAKMSNSQVLVCAPS 508
Query: 316 NVAITELASRV----LKLVKESYK 335
NVA+ +L R+ LK+V+ + K
Sbjct: 509 NVAVDQLCERIHRTGLKVVRLTAK 532
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 107/335 (31%), Positives = 160/335 (47%), Gaps = 29/335 (8%)
Query: 594 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQL-PAMVESKISDEAGFGRSLFERLTS 652
++IDE+ Q E E IPL + G +L+GD QL P ++ K+ D AG +SLFERL S
Sbjct: 703 ILIDESTQASEPECLIPL-MMGAKQVILVGDHRQLGPVLLCKKVVD-AGLSQSLFERLIS 760
Query: 653 LNHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKQYLTGTEFGTYSFINI 712
L H L IQYRMHPS++ FP+ Y Q++ + + + ++ F N
Sbjct: 761 LGHHPERLTIQYRMHPSLTEFPSNTSYEGQLVSELSHTDRDSQSKFPWPQPKDPMFFFNC 820
Query: 713 IGGRE------DFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAI 766
G E FI N E S KI+ K + Q IG+++PY Q I
Sbjct: 821 TGSEEISSSGTSFI-----NTTEASICEKIVTKFLELGSLPGQ---IGIITPYEGQRAYI 872
Query: 767 RK------KIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQRV 820
K+ E +++V S+D FQG E+D II+S VR N IGF+ P+R+
Sbjct: 873 TSHMQKSGKLNLELYK----SIEVASVDSFQGREKDYIILSCVRSNDYQGIGFLQDPRRL 928
Query: 821 NVALTRARHCLWILGSERTLISSESIWGALVCDAKARQCFFNADEERNLAKARLEVSKEL 880
NVALTRAR L ILG+ + L S + +W +L+ K + NL ++ + + K
Sbjct: 929 NVALTRARFGLIILGNAKVL-SKDPLWNSLISHFKNKNVLVEGSLA-NLKQSPVILQKPK 986
Query: 881 VEIGAESLTSTSQGGKKEEFEFEFVKAFRSINLIH 915
G L Q ++ E + +N+++
Sbjct: 987 KLYGQGKLPIPGQNSNSFNYDREHIDPNIGMNMVY 1021
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 14/95 (14%)
Query: 257 LNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTVSMLLLTLLRI---KCRTLACT 313
LNESQ+ A+ L + + LI GPPGTGKT S ++ L++ + L CT
Sbjct: 537 LNESQISAVNKVLT-------APLSLIQGPPGTGKTVISSFIIHHLVKYVKGNDKVLVCT 589
Query: 314 PTNVAITELASRV----LKLVKESYKRDSRSNTPI 344
P+NVAI +L ++ LK+V+ S K +P+
Sbjct: 590 PSNVAIDQLTGKLHEIGLKVVRLSSKLREEVASPV 624
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 145/271 (53%), Gaps = 10/271 (3%)
Query: 594 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFERLTSL 653
++IDE+ Q E E +P+ L G +L+GD CQL +V K + AG +SLFERL L
Sbjct: 614 ILIDESMQSTEPECMVPVVL-GAKQLILVGDHCQLGPVVMCKKAARAGLSQSLFERLVVL 672
Query: 654 NHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKQYLTGTEFGTYSFINII 713
L +QYRMHP +S FP+ FY + +G + + + + F+ +
Sbjct: 673 GIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAEDRRLKLDFPWPQPERPMFFL-VT 731
Query: 714 GGREDFIYHSCR--NIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIRKKIG 771
G+E+ N E + V KI + KA + +Q IG+++PY Q + + +
Sbjct: 732 QGQEEIAGSGTSFLNRTEAANVEKITTRFLKAGIKPEQ---IGIITPYEGQRAYLVQYMQ 788
Query: 772 FE--YENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQRVNVALTRARH 829
++ ++ +++ S+D FQG E+DIII+S VR N IGF++ P+R+NVALTRA+
Sbjct: 789 YQGSLHSRLYQEIEIASVDAFQGREKDIIIMSCVRSNERQGIGFLNDPRRLNVALTRAKF 848
Query: 830 CLWILGSERTLISSESIWGALVCDAKARQCF 860
+ I+G+ + L + + +W L+ K R+
Sbjct: 849 GIIIVGNPKVL-AKQQLWNHLLNFYKDRKVL 878
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 242 KGQWDEKFGPSFSSTLNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTVSMLLLT 301
+G + F LN SQV A+ L+R + LI GPPGTGKT T + ++
Sbjct: 437 RGPQPKLFSAPHLPDLNRSQVYAVKHALQR-------PLSLIQGPPGTGKTVTSATIVYQ 489
Query: 302 LLRIKCRT-LACTPTNVAITELASRV----LKLVKESYKRDSRSNTPI 344
L+++ T L C P+N A+ +L ++ LK+V+ K ++P+
Sbjct: 490 LVKLHGGTVLVCAPSNTAVDQLTEKIHRTNLKVVRVCAKSREAIDSPV 537
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 163/330 (49%), Gaps = 34/330 (10%)
Query: 559 KLVLEDFCFKRASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINH 618
K V E A + T SS+ +I+ L IDE+ Q E E + + + G+
Sbjct: 573 KRVKEHELLAAADVICCTCSSAADARLSKIRTRTVL-IDESTQATEPEILVSI-MRGVRQ 630
Query: 619 AVLIGDECQLPAMVESKISDEAGFGRSLFERLTSLNHSKHLLNIQYRMHPSISLFPNLQF 678
VL+GD CQL +V K + AG +SLFERL L L +QYRMHP +S FP+ F
Sbjct: 631 LVLVGDHCQLGPVVICKKAAIAGLSQSLFERLVLLGIRPFRLQVQYRMHPVLSEFPSNVF 690
Query: 679 YRNQILDGANVKSKSYEKQYLTGTEF-----GTYSFINIIGGREDFIYHSCR--NIVEVS 731
Y + +G + ++TG ++ +F G E+ N E +
Sbjct: 691 YDGSLQNGVTENDR-----HMTGVDWHWPKPNKPAFFWHCSGSEELSASGTSFLNRTEAA 745
Query: 732 AVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIRKKIGFE-------YENKDGFTVKV 784
V K++ KL KA V Q IGV++ Y Q I + + YEN V++
Sbjct: 746 NVEKLVSKLIKAGVQPHQ---IGVITSYEGQRSFIVNYMHTQGTLNSKLYEN-----VEI 797
Query: 785 KSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQRVNVALTRARHCLWILGSERTLISSE 844
S+D FQG E+D II++ VR N IGF+S P+R+NVA+TRA++ L ++G+ + L +
Sbjct: 798 ASVDAFQGREKDYIIVTCVRSNDILGIGFLSDPRRLNVAITRAKYGLVLVGNAKVL-ARH 856
Query: 845 SIWGALVCDAKARQCFF----NADEERNLA 870
+W L+ K+++ + NA + NLA
Sbjct: 857 DLWHELINHYKSKEMLYEGPINALKPLNLA 886
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 12/93 (12%)
Query: 257 LNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTVSMLLLTLL-RIKCRTLACTPT 315
LN SQ+ A+ L R + LI GPPGTGKT + ++ L+ + + L C+P+
Sbjct: 446 LNSSQMQAVKQVLTR-------PLSLIQGPPGTGKTVVSATIVYHLVQKTEGNVLVCSPS 498
Query: 316 NVAITELASRV----LKLVKESYKRDSRSNTPI 344
N+A+ LA ++ LK+V+ + S T +
Sbjct: 499 NIAVDHLAEKIHKTGLKVVRLCARSREHSETTV 531
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 150/282 (53%), Gaps = 25/282 (8%)
Query: 590 PLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFER 649
P + +++DEA Q E E+ PL + N +L+GD QLP V S + E G+ +S+ R
Sbjct: 2174 PFSCVIVDEAGQSCEIETLTPL-IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMAR 2232
Query: 650 LTSL--NHSKH---------LLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKQY 698
L + +H L +QYRMHP I LFP+ Y N+K+ +
Sbjct: 2233 FCRLLEENVEHNMISRLPILQLTVQYRMHPDICLFPSNYVY------NRNLKTNRQTEAI 2286
Query: 699 LTGTE--FGTYSFINIIGGREDFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVV 756
++ F Y ++ G E S N+ E+ V++I+ KL K +IG++
Sbjct: 2287 RCSSDWPFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEII-KLIKDKRKDVSFRNIGII 2345
Query: 757 SPYTAQVVAIRKKIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNT-GGSIGFIS 815
+ Y AQ I+K + E++ K +V ++D FQG ++D +I++ VR N+ GSIGF++
Sbjct: 2346 THYKAQKTMIQKDLDKEFDRKG--PAEVDTVDAFQGRQKDCVIVTCVRANSIQGSIGFLA 2403
Query: 816 KPQRVNVALTRARHCLWILGSERTLISSESIWGALVCDAKAR 857
QR+NV +TRA++ L+ILG RTL+ ++ W L+ DA+ R
Sbjct: 2404 SLQRLNVTITRAKYSLFILGHLRTLMENQH-WNQLIQDAQKR 2444
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 52/115 (45%), Gaps = 23/115 (20%)
Query: 282 LIWGPPGTGKTKTVSMLLLTLL---------------RIK-CRTLACTPTNVAITELASR 325
LI GPPGTGK+KT+ LL LL +IK R L C P+N A+ EL +
Sbjct: 1960 LIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENSNAKIKQNRVLVCAPSNAAVDELMKK 2019
Query: 326 VLKLVKESYKRDSRSNTPICPLGDILLFGNKDRLKVNPGFEEIYL----NYRIKK 376
++ KE K P+ GDI L +N + L N+R+KK
Sbjct: 2020 IILEFKEKCK---DKKNPLGNCGDINLVRLGPEKSINSEVLKFSLDSQVNHRMKK 2071
>sp|Q6ZU11|YD002_HUMAN Uncharacterized protein FLJ44066 OS=Homo sapiens PE=2 SV=1
Length = 926
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 144/267 (53%), Gaps = 14/267 (5%)
Query: 594 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVE-SKISDEAGFGRSLFERLTS 652
+V+DE +Q+ E S +P+ +L+GD QLP ++ S + E G ++LF+RL
Sbjct: 628 VVLDECSQITEPASLLPIARFECEKLILVGDPKQLPPTIQGSDAAHENGLEQTLFDRLCL 687
Query: 653 LNHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKQYLTGTEFGTYSFINI 712
+ H LL QYR HP+IS N FY+ +++G +S ++L T F N+
Sbjct: 688 MGHKPILLRTQYRCHPAISAIANDLFYKGALMNGVTEIERSPLLEWLP-----TLCFYNV 742
Query: 713 IGGREDFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIRKKI-G 771
G + +S N+ E + +K++Q L + + IGV++ Y +Q+ + +
Sbjct: 743 KGLEQIERDNSFHNVAEATFTLKLIQSLIASGIAGSM---IGVITLYKSQMYKLCHLLSA 799
Query: 772 FEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQRVNVALTRARHCL 831
++ + D TV+V ++D FQG E++III+S VR +GFI +R+NVALTR + L
Sbjct: 800 VDFHHPDIKTVQVSTVDAFQGAEKEIIILSCVRTR---QVGFIDSEKRMNVALTRGKRHL 856
Query: 832 WILGSERTLISSESIWGALVCDAKARQ 858
I+G+ L ++ +WG ++ + R+
Sbjct: 857 LIVGNLACLRKNQ-LWGRVIQHCEGRE 882
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/282 (33%), Positives = 150/282 (53%), Gaps = 25/282 (8%)
Query: 590 PLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFER 649
P + +++DEA Q E E+ PL + N +L+GD QLP V S + E G+ +S+ R
Sbjct: 2150 PFSCVIVDEAGQSCEVETLSPL-IHRCNKLILVGDPKQLPPTVISMKAQEYGYDQSMMAR 2208
Query: 650 LTSL---NHSKHL--------LNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKQY 698
L N +++ L IQYRMHP I LFP+ Y N+K+ +
Sbjct: 2209 FCKLLEENVEQNMIGRLPVLQLTIQYRMHPDICLFPSNYVY------NKNLKTNRLTESI 2262
Query: 699 LTGTE--FGTYSFINIIGGREDFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVV 756
+E F Y ++ G E S N+ E+ V++I+ KL K +IG++
Sbjct: 2263 RCSSEWPFQPYLVFDVGDGSERRDNDSYINVQEIKLVMEII-KLIKEKRKDISFRNIGII 2321
Query: 757 SPYTAQVVAIRKKIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNT-GGSIGFIS 815
+ Y AQ I+K + E++ K +V ++D FQG ++D II++ VR + GSIGF++
Sbjct: 2322 THYKAQKTMIQKDLEKEFDKKG--PAEVDTVDAFQGRQKDCIIVTCVRASAVQGSIGFLA 2379
Query: 816 KPQRVNVALTRARHCLWILGSERTLISSESIWGALVCDAKAR 857
QR+NV +TRA++ L+ILG RTL+ ++ W L+ DA+ R
Sbjct: 2380 SLQRLNVTITRAKYSLFILGHLRTLMENQH-WYELIQDAQKR 2420
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 52/115 (45%), Gaps = 23/115 (20%)
Query: 282 LIWGPPGTGKTKTVSMLLLTLL---------------RIK-CRTLACTPTNVAITELASR 325
LI GPPGTGK+KT+ LL LL +IK R L C P+N A+ EL +
Sbjct: 1936 LIHGPPGTGKSKTIVGLLYRLLTENQRKGHSDENFNAKIKQNRVLVCAPSNAAVDELMKK 1995
Query: 326 VLKLVKESYKRDSRSNTPICPLGDILLFGNKDRLKVNPGFEEIYL----NYRIKK 376
++ KE K P+ GDI L +N + L N+R+KK
Sbjct: 1996 IILEFKEKCK---DKKNPLGNCGDINLVRLGPEKSINTEVLKFSLDSQVNHRMKK 2047
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 141/288 (48%), Gaps = 27/288 (9%)
Query: 579 SSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISD 638
S YK SV +IDEA Q E E IPL L G VL+GD QL +V +K
Sbjct: 554 SKYKFRSV--------LIDEATQASEPECMIPLVL-GAKQVVLVGDHQQLGPVVMNKKVA 604
Query: 639 EAGFGRSLFERLTSLNHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKQY 698
A +SLFERL L +S L +QYRMHP +S FP+ FY + +G +
Sbjct: 605 LASLSQSLFERLIILGNSPFRLVVQYRMHPCLSEFPSNTFYEGTLQNGVTTSERIARHVD 664
Query: 699 LTGTEFGTYSFINIIGGREDFIYH--SCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVV 756
+ + G+E+ S N E S KI+ ++ V +Q IG+V
Sbjct: 665 FPWIQPDSPLMFYANFGQEELSASGTSFLNRTEASTCEKIVTTFLRSNVLPEQ---IGIV 721
Query: 757 SPYTAQVVAIRKKIGFEYENKDGF-------TVKVKSIDGFQGGEEDIIIISTVRCNTGG 809
+PY Q I +Y +G V+V S+D FQG E+D II+S VR +
Sbjct: 722 TPYDGQRSYI-----VQYMQNNGSMQKDLYKAVEVASVDAFQGREKDFIILSCVRSSEHQ 776
Query: 810 SIGFISKPQRVNVALTRARHCLWILGSERTLISSESIWGALVCDAKAR 857
IGF++ P+R+NVALTRA++ + +LG+ + L + ++W V K +
Sbjct: 777 GIGFVNDPRRLNVALTRAKYGVIVLGNPKVL-AKHALWYHFVLHCKEK 823
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 18/90 (20%)
Query: 257 LNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTVSMLLLTLLRIKCR-------T 309
LN SQ A+ A L + + LI GPPGTGKT T + ++ L ++ R
Sbjct: 393 LNASQSEAVRAVLSK-------PLSLIQGPPGTGKTVTSASVVYHLATMQSRKRKSHSPV 445
Query: 310 LACTPTNVAITELASRV----LKLVKESYK 335
L C P+NVA+ +LA ++ L++V+ + K
Sbjct: 446 LVCAPSNVAVDQLAEKIHRTGLRVVRVAAK 475
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 149/288 (51%), Gaps = 10/288 (3%)
Query: 594 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFERLTSL 653
++IDE+ Q E + P++L +++G+ + V K + +AG +SLFERL L
Sbjct: 615 ILIDESTQATEPKCIGPVELGA--KQLILGEITASWSCVMCKKAAKAGLSQSLFERLVVL 672
Query: 654 NHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKQYLTGTEFGTYSFINII 713
L +QYRMHP++S FP+ FY + +G + + + F +
Sbjct: 673 GIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAGDRIKKGFDFQWPQPEKPMFFYVT 732
Query: 714 GGREDFIYH--SCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIRKKIG 771
G+E+ S N E + V KI +L KA Q IG+++PY Q + + +
Sbjct: 733 QGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQ---IGIITPYEGQRSYLVQYMQ 789
Query: 772 FEYE-NKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQRVNVALTRARHC 830
F + + V++ S+D FQG E+D II+S VR N IGF++ P+R+NVALTRA++
Sbjct: 790 FSGSLHTKLYQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRAKYG 849
Query: 831 LWILGSERTLISSESIWGALVCDAKARQCFFNADEERNLAKARLEVSK 878
+ I+G+ + L S + +W L+ + K ++ NL ++ ++ SK
Sbjct: 850 VIIVGNPKAL-SKQPLWNNLLNNYKEQKVLVEG-PLNNLRESLMQFSK 895
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 235 ELCSVQRKGQWDEKFGPSFSSTLNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKT 294
E+ V K Q ++F + LN SQV A+ L+R + LI GPPGTGKT T
Sbjct: 431 EVEDVTIKCQLPKRFTANGLPDLNHSQVYAVKTVLQR-------PLSLIQGPPGTGKTVT 483
Query: 295 VSMLLLTLLRI-KCRTLACTPTNVAITELASRV----LKLVKESYKRDSRSNTPI 344
+ ++ L R L C P+N+A+ +L ++ LK+V+ K +P+
Sbjct: 484 SATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPV 538
>sp|P32644|ECM32_YEAST Putative ATP-dependent RNA helicase ECM32 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ECM32 PE=1 SV=1
Length = 1121
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/338 (29%), Positives = 159/338 (47%), Gaps = 59/338 (17%)
Query: 569 RASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQL 628
++ + F+T ++ IK +++DEA Q E+ + +PL L GI + V +GDE QL
Sbjct: 792 QSQIIFTTNIAAGGRELKVIKECPVVIMDEATQSSEASTLVPLSLPGIRNFVFVGDEKQL 851
Query: 629 PAMVESKISDEAGFGRSLFERLTSLNHSKH--LLNIQYRMHPSISLFPNLQFYRNQILDG 686
S S+ SLFER+ S K+ +L+ QYRMHP IS FP + Y ++ DG
Sbjct: 852 -----SSFSNIPQLETSLFERVLSNGTYKNPLMLDTQYRMHPKISEFPIKKIYNGELKDG 906
Query: 687 ANVKSKSY----EKQYLTGTEFGTYSFI-----NIIGGREDFIYHSCRNIVEVSAVIKIL 737
+ K++ + + G S + +I+G F Y + VE+ +I+IL
Sbjct: 907 VTDEQKAWPGVQHPLFFYQCDLGPESRVRSTQRDIVG----FTYENKHECVEIVKIIQIL 962
Query: 738 QKLYKAWVGSKQKVSIGVVSPYTAQ-----------VVAIRKKIGF--EYENKDGFT--- 781
K + IGV++PY+AQ VV K+I EY+ + F
Sbjct: 963 MLDKKVPL-----EEIGVITPYSAQRDLLSDILTKNVVINPKQISMQQEYDEIELFNAAG 1017
Query: 782 ------------------VKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQRVNVA 823
+ V ++D FQG E+ II S VR NT IGF+ +R+NVA
Sbjct: 1018 SQGTAGSLQNNVINIINGLHVATVDSFQGHEKSFIIFSCVRNNTENKIGFLRDKRRLNVA 1077
Query: 824 LTRARHCLWILGSERTLISSESIWGALVCDAKARQCFF 861
LTRA+H L ++G++ L + +W + + ++ F
Sbjct: 1078 LTRAKHGLIVVGNKNVLRKGDPLWKDYITYLEEQEVIF 1115
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 15/107 (14%)
Query: 254 SSTLNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKT-VSMLLLTLLRIKCRTLAC 312
S LN SQ A+ L + + ++ GPPGTGKT T +++ + R + C
Sbjct: 646 SDKLNRSQKTAVEHVLN-------NSITILQGPPGTGKTSTIEEIIIQVIERFHAFPILC 698
Query: 313 -TPTNVAITELASRVL------KLVKESYKRDSRSNTPICPLGDILL 352
+N+AI +A +++ K+++ K+ + + PLG+I L
Sbjct: 699 VAASNIAIDNIAEKIMENRPQIKILRILSKKKEQQYSDDHPLGEICL 745
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 163/327 (49%), Gaps = 39/327 (11%)
Query: 541 LRNLWNSLDELNLPCTTSKLVLEDFCFKRASLFFSTASSSYKLHSVEIKPLNFLVIDEAA 600
++ + N+LDE+ L D S+ S ++ + +VIDE +
Sbjct: 353 IKRIINNLDEITEKIMNEILAEADVIVATNSMAGSEILKGWEF--------DVIVIDEGS 404
Query: 601 QLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFERLTS-LNHSKHL 659
Q E IP+ + G ++ GD QLP V +S+ ++LFERL +
Sbjct: 405 QAMEPSCLIPI-VKG-RKLIMAGDHKQLPPTV---LSENEELKKTLFERLIKKYPEFSSI 459
Query: 660 LNIQYRMHPSISLFPNLQFYRNQILDGANVKSKS----YEKQYLTGTEFGTYS-----FI 710
L IQYRM+ I FPN FY N++ +VK+ + +++ + + + FI
Sbjct: 460 LEIQYRMNEKIMEFPNKMFYNNKLKADESVKNITLLDLVKEEEIDEVDRDIINEIPVQFI 519
Query: 711 NIIG-GREDFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIRKK 769
N+ G R+D S NI E V++I++KL K K+ V++PY AQV +R+
Sbjct: 520 NVEGIERKDKESPSYYNIEEAEKVLEIVKKLVKY------KIPTNVITPYDAQVRYLRR- 572
Query: 770 IGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQRVNVALTRARH 829
FE N D ++V ++DGFQG E + I+IS VR + GF+ +R+NVA+TRA+
Sbjct: 573 -LFEEHNID---IEVNTVDGFQGRENEAIVISFVRTK---NFGFLKDLRRLNVAITRAKR 625
Query: 830 CLWILGSERTLISSESIWGALVCDAKA 856
L ++G+E L+ + ++ ++ AK+
Sbjct: 626 KLILIGNE-NLLKQDKVYNEMIKWAKS 651
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 18/149 (12%)
Query: 253 FSSTLNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTVSMLLLTLLRI-KCRTLA 311
+ LNESQ A+ + D LI GPPGTGKT+T++ +++ ++ K + LA
Sbjct: 181 YDKNLNESQKLAVKKAVLSRDLY------LIHGPPGTGKTRTITEVIVQEVKFNKHKVLA 234
Query: 312 CTPTNVAITELASRVLKLVKESYK--RDSRSNTPICPLGDILLFGNKDRLKVNPGFEEIY 369
+N+A A +L+ + + Y + R P D++ ++ + ++EI
Sbjct: 235 TADSNIA----ADNILEYLIKKYPDLKVVRVGHPTRISKDLIQHSLPYLIENHEKYQEIL 290
Query: 370 -LNYRIKKLRE----CFAPLSGWRHCFSS 393
L +IK+++E P WR S
Sbjct: 291 ALREKIKEIKEQRDKFLKPSPRWRRGMSD 319
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hcs1 PE=3 SV=1
Length = 660
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 132/261 (50%), Gaps = 29/261 (11%)
Query: 594 LVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFERLTSL 653
++IDEA+Q E + IPL G+N +L GD QL V+SK S+FERL
Sbjct: 386 VIIDEASQALEPQCWIPL--LGMNKVILAGDHMQLSPNVQSKRP-----YISMFERLVKS 438
Query: 654 NHS--KHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSK------SYEKQYLTGTE-- 703
K LNIQYRMH IS FP+ FY ++++ VK + + E+ LT +
Sbjct: 439 QGDLVKCFLNIQYRMHELISKFPSDTFYDSKLVPAEEVKKRLLMDLENVEETELTDSPIY 498
Query: 704 ----FGTYSFINIIGGREDFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPY 759
G Y + ++F S N E V + L +A + +K I VV+PY
Sbjct: 499 FYDTLGNYQEDDRSEDMQNFYQDSKSNHWEAQIVSYHISGLLEAGLEAK---DIAVVTPY 555
Query: 760 TAQVVAIRKKIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQR 819
AQV IR+ + + G V++ S+D QG E++ II S VR N +GF+++ +R
Sbjct: 556 NAQVALIRQLL-----KEKGIEVEMGSVDKVQGREKEAIIFSLVRSNDVREVGFLAEKRR 610
Query: 820 VNVALTRARHCLWILGSERTL 840
+NVA+TR + L ++G T+
Sbjct: 611 LNVAITRPKRHLCVIGDSNTV 631
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 282 LIWGPPGTGKTKTVSMLLLTLLRIKCRTLACTPTNVAITELASRVLKLVKESYKRDSRSN 341
LI GPPGTGKT T+ ++ L+ R L C +N+A+ + R+ S S
Sbjct: 229 LIHGPPGTGKTHTLVEIIQQLVLRNKRILVCGASNLAVDNIVDRL-----------SSSG 277
Query: 342 TPICPLG 348
P+ LG
Sbjct: 278 IPMVRLG 284
>sp|Q9BYK8|HELZ2_HUMAN Helicase with zinc finger domain 2 OS=Homo sapiens GN=HELZ2 PE=1 SV=6
Length = 2649
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/325 (28%), Positives = 151/325 (46%), Gaps = 35/325 (10%)
Query: 565 FCFKRASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLKESESTIPL-QLAGINHAVLIG 623
F R + T S + S++I + +++DEA E E+ IPL Q VL+G
Sbjct: 2329 FELDRHEVILCTCSCAASA-SLKILDVRQILVDEAGMATEPETLIPLVQFPQAEKVVLLG 2387
Query: 624 DECQLPAMVESKISDEAGFGRSLFERLTSLNHSKHLLNIQYRMHPSISLFPNLQFYRNQI 683
D QL +V+++ G RSLFER + H+L+ QYRMH I FP++ FY++++
Sbjct: 2388 DHKQLRPVVKNERLQNLGLDRSLFERY---HEDAHMLDTQYRMHEGICAFPSVAFYKSKL 2444
Query: 684 LDGANVKSKSYEKQYLTGTEFGTYSFINIIGGREDFIY-------HSCRNIVEVSAVIKI 736
++ + G E F ++ G + +S N+ EV+ V++I
Sbjct: 2445 KTWQGLRRPPSVLGH-AGKESCPVIFGHVQGHERSLLVSTDEGNENSKANLEEVAEVVRI 2503
Query: 737 LQKLYKAWVGSKQKVSIGVVSPYTAQVVAIRKKIGFEYENKDGFT-VKVKSIDGFQGGEE 795
++L Q I V++PY AQ I K + ++G V V SI QG E
Sbjct: 2504 TKQLTLGRTVEPQ--DIAVLTPYNAQASEISKAL-----RREGIAGVAVSSITKSQGSEW 2556
Query: 796 DIIIISTVRCNTGGS-------------IGFISKPQRVNVALTRARHCLWILGSERTLIS 842
+++STVR +GF+ P +VNVA+TRA+ L ++G + L+
Sbjct: 2557 RYVLVSTVRTCAKSDLDQRPTKSWLKKFLGFVVDPNQVNVAVTRAQEGLCLIG-DHLLLR 2615
Query: 843 SESIWGALVCDAKARQCFFNADEER 867
+W +L+ +A+Q A + R
Sbjct: 2616 CCPLWRSLLDFCEAQQTLVPAGQVR 2640
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/300 (26%), Positives = 131/300 (43%), Gaps = 41/300 (13%)
Query: 567 FKRASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGIN-HAVLIGDE 625
R + +T S + +L V + + ++IDEAAQ+ E E+ PL A VL GD
Sbjct: 638 LARHRVVVTTTSQARELR-VPVGFFSHILIDEAAQMLECEALTPLAYASHGTRLVLAGDH 696
Query: 626 CQLPAMVESKISDEAGFGRSLFERL---------TSLNHSKHLLNIQYRMHPSISLFPNL 676
Q+ + S ++ +L RL S+ + + YR +I F +
Sbjct: 697 MQVTPRLFS-VARARAAEHTLLHRLFLCYQQETHEVARQSRLVFHENYRCTDAIVSFISR 755
Query: 677 QFYRNQILDG----ANVKSKSYEKQYLTGTEFGTYSFINIIGGRE-DFIYHSCRNIVEVS 731
FY + G A K + + Y F ++ G + D S N+ E++
Sbjct: 756 HFY---VAKGNPIHARGKVPPHPRHY-------PLMFCHVAGSPDRDMSMASWLNLAEIA 805
Query: 732 AVIKILQKLYKAWV---GSKQKVSIGVVSPYTAQVVAIRKKIGFEYENKDGFTVKVKSID 788
V++ +Q+ Y W G +++ I VVS + AQV A+R+ E +D V V S +
Sbjct: 806 QVVEKVQEAYNTWPSCWGGREQRCICVVS-HGAQVSALRQ----ELRRRDLGQVSVGSFE 860
Query: 789 GFQGGEEDIIIISTVR-CNTGGSIG-----FISKPQRVNVALTRARHCLWILGSERTLIS 842
G + ++++STV C + S G F + + +N LTRA+ L ++G L S
Sbjct: 861 ILPGRQFRVVVLSTVHTCQSLLSPGALAPEFFTDARVLNTVLTRAQSQLVVVGDAVALCS 920
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 275 GHRSGVELIWGPPGTGKTKTVSMLLLTLL-RIKCRTLACTPTNVA 318
G R LI+GP GTGKT T++M L ++ R + + L CT TN A
Sbjct: 534 GRRVPPLLIYGPFGTGKTYTLAMASLEVIRRPETKVLICTHTNSA 578
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1
SV=1
Length = 683
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/287 (31%), Positives = 143/287 (49%), Gaps = 34/287 (11%)
Query: 577 ASSSYKLHSVEIKPLNF-----LVIDEAAQLKESESTIPLQLAGINH---AVLIGDECQL 628
SSS +L S+ NF L+IDE +Q E + IPL +A N VL GD QL
Sbjct: 370 GSSSRELCSLYRDDPNFQLFDTLIIDEVSQAMEPQCWIPL-IAHQNQFHKLVLAGDNKQL 428
Query: 629 PAMVESKISDEA--GFGRSLFERLTSLNHSKHL---LNIQYRMHPSISLFPNLQFYRNQI 683
P ++++ +LF+R+ + + + LN+QYRM+ I FP+ Y ++
Sbjct: 429 PPTIKTEDDKNVIHNLETTLFDRIIKIFPKRDMVKFLNVQYRMNQKIMEFPSHSMYNGKL 488
Query: 684 LDGANVKSK---SYEKQYLTGTEFGTYSFINII-----------GGREDFIYHSCRNIVE 729
L A V ++ T +E + I +I E I S N E
Sbjct: 489 LADATVANRLLIDLPTVDATPSEDDDDTKIPLIWYDTQGDEFQETADEATILGSKYNEGE 548
Query: 730 VSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIRKKIGFEYENKDGFTVKVKSIDG 789
++ V + ++ L V SIGV+SPY AQV ++K I E + D +++ ++DG
Sbjct: 549 IAIVKEHIENLRSFNVPEN---SIGVISPYNAQVSHLKKLIHDELKLTD---IEISTVDG 602
Query: 790 FQGGEEDIIIISTVRCNTGGSIGFISKPQRVNVALTRARHCLWILGS 836
FQG E+D+II+S VR N +GF+ + +R+NVA+TR R L ++G+
Sbjct: 603 FQGREKDVIILSLVRSNEKFEVGFLKEERRLNVAMTRPRRQLVVVGN 649
Score = 42.7 bits (99), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 24/109 (22%)
Query: 253 FSSTLNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTVSMLLLTLL--RIKCRTL 310
+ LN+SQ A ++ + + +I GPPGTGKT T+ L+ LL + R L
Sbjct: 204 LNPNLNDSQKTA-------INFAINNDLTIIHGPPGTGKTFTLIELIQQLLIKNPEERIL 256
Query: 311 ACTPTNVAITELASRVLKLVKESYKRDSRSNTPICPLGDILLFGNKDRL 359
C P+N+++ + R+ TP+ P +L G+ RL
Sbjct: 257 ICGPSNISVDTILERL---------------TPLVPNNLLLRIGHPARL 290
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1
SV=1
Length = 988
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 129/258 (50%), Gaps = 19/258 (7%)
Query: 592 NFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFERLT 651
+ +V+DE AQ E+ IPL A +L GD QLP S + AG RSL ERL
Sbjct: 369 DVVVVDECAQALEASCWIPLLKA--PKCILAGDHKQLPPTTVSHKAALAGLSRSLMERLA 426
Query: 652 SLNHSK--HLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEK-QYLTGTEFGTYS 708
+ + +L +QYRMH +I+ + + Y Q+ +V + + TE +
Sbjct: 427 EKHGAAVVRMLAVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLLKDLPGVADTEETSVP 486
Query: 709 FINIIGGR------EDFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQ 762
+ I E+ S N EV V +Q L A V Q I V++PY Q
Sbjct: 487 LLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGV---QAGDIAVIAPYNLQ 543
Query: 763 VVAIRKKIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQRVNV 822
V +R+ + ++ +++KS+DGFQG E++ +I++ VR N G +GF+++ +R+NV
Sbjct: 544 VDLLRQSLSNKHPE-----LEIKSVDGFQGREKEAVILTFVRSNRKGEVGFLAEDRRINV 598
Query: 823 ALTRARHCLWILGSERTL 840
A+TRAR + ++ T+
Sbjct: 599 AVTRARRHVAVICDSHTV 616
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 253 FSSTLNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTVSMLLLTLLRIKCRTLAC 312
+++TL+ SQ A+ L + + V +I GPPGTGKT TV ++L ++ + L C
Sbjct: 187 YNTTLDPSQKEAVSFALAQKE------VAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC 240
Query: 313 TPTNVAITELASRV 326
P+N+A+ L R+
Sbjct: 241 APSNIAVDNLVERL 254
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 136/275 (49%), Gaps = 23/275 (8%)
Query: 577 ASSSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKI 636
ASS L + + +V+DE AQ E+ IPL A +L GD QLP S
Sbjct: 354 ASSDGPLKLLPENHFDVVVVDECAQALEASCWIPLLKA--PKCILAGDHRQLPPTTISHK 411
Query: 637 SDEAGFGRSLFERLTSLNHSK--HLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSY 694
+ AG RSL ERL + + +L +QYRMH +I+ + + Y Q+ +V
Sbjct: 412 AALAGLSRSLMERLVEKHGAGAVRMLTVQYRMHQAITRWASEAMYHGQLTAHPSVAGHLL 471
Query: 695 EK-QYLTGTEFGTYSF--INIIG------GREDFIYHSCRNIVEVSAVIKILQKLYKAWV 745
+ + TE + I+ G ED S N EV V +Q L A V
Sbjct: 472 KDLPGVADTEETSVPLLLIDTAGCGLLELDEED--SQSKGNPGEVRLVTLHIQALVDAGV 529
Query: 746 GSKQKVSIGVVSPYTAQVVAIRKKIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRC 805
+ I V++PY QV +R+ + ++ +++KS+DGFQG E++ +I++ VR
Sbjct: 530 HAG---DIAVIAPYNLQVDLLRQSLSNKHPE-----LEIKSVDGFQGREKEAVILTFVRS 581
Query: 806 NTGGSIGFISKPQRVNVALTRARHCLWILGSERTL 840
N G +GF+++ +R+NVA+TRAR + ++ RT+
Sbjct: 582 NRKGEVGFLAEDRRINVAVTRARRHVAVICDSRTV 616
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 280 VELIWGPPGTGKTKTVSMLLLTLLRIKCRTLACTPTNVAITELASRV 326
V +I GPPGTGKT TV ++L ++ + L C P+NVA+ L R+
Sbjct: 208 VAIIHGPPGTGKTTTVVEIILQAVKQGLKILCCAPSNVAVDNLVERL 254
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 127/258 (49%), Gaps = 19/258 (7%)
Query: 592 NFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFERLT 651
+ +V+DE AQ E+ IPL A +L GD QLP S + AG RSL ERL
Sbjct: 369 DVVVVDECAQALEASCWIPLLKA--PKCILAGDHRQLPPTTVSHRAALAGLSRSLMERLA 426
Query: 652 SLNHSK--HLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEK-QYLTGTEFGTYS 708
+ + +L +QYRMH +I + + Y Q +V + +T TE
Sbjct: 427 EKHGAGVVRMLTVQYRMHQAIMCWASEAMYHGQFTSHPSVAGHLLKDLPGVTDTEETRVP 486
Query: 709 FINIIGGR------EDFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQ 762
+ I E+ S N EV V +Q L A V Q I V++PY Q
Sbjct: 487 LLLIDTAGCGLLELEEEDSQSKGNPGEVRLVTLHIQALVDAGV---QAGDIAVIAPYNLQ 543
Query: 763 VVAIRKKIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQRVNV 822
V +R+ + ++ +++KS+DGFQG E++ ++++ VR N G +GF+++ +R+NV
Sbjct: 544 VDLLRQSLSNKHPE-----LEIKSVDGFQGREKEAVLLTFVRSNRKGEVGFLAEDRRINV 598
Query: 823 ALTRARHCLWILGSERTL 840
A+TRAR + ++ T+
Sbjct: 599 AVTRARRHVAVICDSHTV 616
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 253 FSSTLNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTVSMLLLTLLRIKCRTLAC 312
+++TL+ SQ A+ L + + + +I GPPGTGKT TV ++L ++ + L C
Sbjct: 187 YNTTLDLSQKEAVSFALAQKE------LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC 240
Query: 313 TPTNVAITELASRV 326
P+N+A+ L R+
Sbjct: 241 APSNIAVDNLVERL 254
>sp|Q1LXK4|M10B1_DANRE Putative helicase mov-10-B.1 OS=Danio rerio GN=mov10b.1 PE=2 SV=2
Length = 1013
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 139/293 (47%), Gaps = 46/293 (15%)
Query: 594 LVIDEAAQLKESESTIPLQLAGINHA-----VLIGDECQLPAMVESKISDEAGFGRSLFE 648
+ +DEA E E I + +AG+ +A VL GD QL ++ S + + G G SL E
Sbjct: 669 IFVDEAGHAVEPE--IVISVAGLLNAETGQLVLAGDPKQLGPILRSPFAIKYGLGLSLLE 726
Query: 649 RLTSLNH--------------SKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSY 694
RL + N +K L N YR HPSI PN FY N++ A+ S
Sbjct: 727 RLMTQNELYQKGDTGFDNRYVTKLLQN--YRSHPSILKVPNELFYDNELKACADEISS-- 782
Query: 695 EKQYLTGTEFGTYSFINIIGG-----REDFIYHSCRNIVEVSAVIKILQKLY----KAWV 745
+QY T F I G + S N E+ ++ L+KL K +
Sbjct: 783 -RQYCTWEHLPKRGFPVIFHGVVGKDERESTSPSFFNTSEIDKIMDYLKKLLLTQAKKGI 841
Query: 746 GSKQKVSIGVVSPYTAQVVAIRK--KIGFEYENKDGFT-VKVKSIDGFQGGEEDIIIIST 802
IG+++PY QV IR+ KI E ++ G +KV S++ FQG E +II+ST
Sbjct: 842 AKISPKDIGIIAPYRKQVEKIRQAIKIHRELKSLSGIEELKVGSVEEFQGQERKVIIVST 901
Query: 803 VRCNTGG-------SIGFISKPQRVNVALTRARHCLWILGSERTLISSESIWG 848
VR + +IGF+ +R NVA+TRA+ L ++G+ ++ ++ IWG
Sbjct: 902 VRSSKEHIILDDKFNIGFLKNEKRFNVAVTRAKALLIMVGNP-IILRTDEIWG 953
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 282 LIWGPPGTGKTKTVSMLLLTLLRIK--CRTLACTPTNVAITELASRVL 327
L++GPPGTGKT T+ + + + R LAC P+N A +L +++
Sbjct: 547 LVFGPPGTGKTVTIVEAIKQVEKNTGGARILACAPSNSAADQLGEKLI 594
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 129/260 (49%), Gaps = 23/260 (8%)
Query: 592 NFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFERLT 651
+ +VIDE AQ E+ IPL A +L GD QLP S + AG SL ERL
Sbjct: 370 DVVVIDECAQALEASCWIPLLKA--RKCILAGDHKQLPPTTVSHKAALAGLSLSLMERLA 427
Query: 652 SLNHSK--HLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKQYLTGT----EFG 705
++ L +QYRMH +I + + Y Q+ ++V + + L G E G
Sbjct: 428 EEYGARVVRTLTVQYRMHQAIMRWASDTMYLGQLTAHSSVAR--HLLRDLPGVAATEETG 485
Query: 706 TYSFINIIGG-----REDFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYT 760
+ G E+ S N EV V +Q L A V ++ I VVSPY
Sbjct: 486 VPLLLVDTAGCGLFELEEEDEQSKGNPGEVRLVSLHIQALVDAGVPAR---DIAVVSPYN 542
Query: 761 AQVVAIRKKIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQRV 820
QV +R+ + + +++KS+DGFQG E++ +I+S VR N G +GF+++ +R+
Sbjct: 543 LQVDLLRQSLVHRHPE-----LEIKSVDGFQGREKEAVILSFVRSNRKGEVGFLAEDRRI 597
Query: 821 NVALTRARHCLWILGSERTL 840
NVA+TRAR + ++ RT+
Sbjct: 598 NVAVTRARRHVAVICDSRTV 617
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 253 FSSTLNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTVSMLLLTLLRIKCRTLAC 312
F++ L+ SQ A+L L + + + +I GPPGTGKT TV ++L ++ + L C
Sbjct: 188 FNTCLDTSQKEAVLFALSQKE------LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC 241
Query: 313 TPTNVAITELASRVLKLVKESYKR 336
P+N+A+ L R L L K+ R
Sbjct: 242 APSNIAVDNLVER-LALCKQRILR 264
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1
SV=1
Length = 1002
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 154/325 (47%), Gaps = 36/325 (11%)
Query: 548 LDELNLPCTTSKLVLEDFCFKRASLFFSTASSSYKLHSVEIKPLNF--LVIDEAAQLKES 605
DEL C K R L ST S+ L++ + +F +++DEA Q E
Sbjct: 500 FDELIFKCPPLK------ALTRYKLVVSTYMSASLLNAEGVNRGHFTHILLDEAGQASEP 553
Query: 606 ESTIPLQLAGINHAVLI--GDECQLPAMVESKISDEAGFGRSLFERL--------TSLNH 655
E+ I + + V++ GD QL ++ S+ ++ G G+S ERL N+
Sbjct: 554 ENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDENY 613
Query: 656 SKHLLNIQYRMHPSISLFPNLQFYRNQILDGA-NVKSKSYEKQYLTGTEFGTYSFINIIG 714
L+ YR HP I P+ FY +++ + S +L EF F I G
Sbjct: 614 VTKLVK-NYRCHPEILDLPSKLFYDGELVASKEDTDSVLASLNFLPNKEF-PMVFYGIQG 671
Query: 715 GRE-DFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIRKKIGFE 773
E + S N +E+S VI+ +++L Q+ IGV++PY QV+ I++ +
Sbjct: 672 CDEREGNNPSWFNRIEISKVIETIKRLTAN--DCVQEEDIGVITPYRQQVMKIKEVL--- 726
Query: 774 YENKDGFTVKVKSIDGFQGGEEDIIIISTVRC-------NTGGSIGFISKPQRVNVALTR 826
+ D VKV S++ FQG E+ +IIISTVR + +GF+S P+R NVA+TR
Sbjct: 727 -DRLDMTEVKVGSVEQFQGQEKQVIIISTVRSTIKHNEFDRAYCLGFLSNPRRFNVAITR 785
Query: 827 ARHCLWILGSERTLISSESIWGALV 851
A L I+G+ +I + W L+
Sbjct: 786 AISLLVIIGNPH-IICKDMNWNKLL 809
Score = 38.5 bits (88), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 282 LIWGPPGTGKTKTV--SMLLLTLLRIKCRTLACTPTNVAITELASRVLKL 329
+I GPPGTGKT T+ +++ L + R L C P+N A + ++L L
Sbjct: 418 VIHGPPGTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLLCL 467
>sp|Q6J5K9|ARMI_DROME Probable RNA helicase armi OS=Drosophila melanogaster GN=armi PE=2
SV=3
Length = 1274
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 142/311 (45%), Gaps = 51/311 (16%)
Query: 594 LVIDEAAQLKESESTIPLQL--AGINHAVLIGDECQLPAMVESKISDEAGFGRSLFERLT 651
++ DEA Q E E+ +P+ + + VL GD QL ++V S+I+ + GF S ERL
Sbjct: 945 VLFDEAGQCTEPETMVPIVMLTKKRSQVVLSGDPRQLQSIVTSRIASKMGFSISFLERL- 1003
Query: 652 SLNHSKHLLNIQ-------------------YRMHPSISLFPNLQFYRNQILDGANVKSK 692
L S + ++Q YR PSI + FY ++++ + K
Sbjct: 1004 -LERSPYRKDLQRFPESSGYNPLVLTKLLYNYRALPSIMSIYSRLFYDDELIPVLSEKDS 1062
Query: 693 S-----------YEKQYLTGTEFGTYSFINIIG-GREDFIYHSCRNIVEVSAVIKILQKL 740
+E + GT+ F IIG R++ S N EV V + L
Sbjct: 1063 RESRLLSKLRCVFESEKDIPQAHGTF-FYGIIGENRQNNDSPSWFNPQEVREVFLMTIAL 1121
Query: 741 YKAWVGSKQKVSIGVVSPYTAQVVAIRKKIGFEYENKDGFTVKVKSIDGFQGGEEDIIII 800
Y+A V + Q IG+++PY QV +R + D K+ S++ FQG E DII+I
Sbjct: 1122 YRANVTADQ---IGIITPYQKQVKMLRSM----FIGTDVVMPKIGSVEEFQGQERDIILI 1174
Query: 801 STVRC-------NTGGSIGFISKPQRVNVALTRARHCLWILGSERTLISSESIWGALVCD 853
STVR + S+GF+ +R+NVA++RAR + I G+ L++ + W L+
Sbjct: 1175 STVRSSEEILRMDARFSLGFVRCSKRLNVAVSRARAMMIIFGNPH-LLAVDECWRQLILF 1233
Query: 854 AKARQCFFNAD 864
+F D
Sbjct: 1234 CVKNNAYFGCD 1244
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 253 FSSTLNESQVGAMLACLRRLDCGHRSGVE-LIWGPPGTGKTKTVSMLLLTLLR--IKCRT 309
++ +LN Q A+ LR G + +++GPPG+GKT T+ LL L+R R
Sbjct: 780 YNQSLNSIQKRAVFNILR----GEAENIPYVLFGPPGSGKTMTLIETLLQLVRNLPGARI 835
Query: 310 LACTPTNVAITELASRVL 327
L TP+N + + R++
Sbjct: 836 LVGTPSNSSADLVTKRLI 853
>sp|Q8QHA5|DNA2_XENLA DNA replication ATP-dependent helicase/nuclease DNA2 OS=Xenopus
laevis GN=dna2 PE=1 SV=1
Length = 1053
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 84/298 (28%), Positives = 137/298 (45%), Gaps = 34/298 (11%)
Query: 592 NFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFERLT 651
+F ++DEA+Q+ + PL A + VL+GD QLP +V+S + E G SLF+RL
Sbjct: 758 DFCIVDEASQISQPICLGPLFFA--DRFVLVGDHQQLPPLVKSAEARELGMSESLFKRLE 815
Query: 652 SLNHSKHLLNIQYRMHPSISLFPNLQFYR-----------NQILDGANVKSKSYEKQYLT 700
+ L +QYRM+ I N Y N ++ ++K+ E ++
Sbjct: 816 RNQEAVVQLTVQYRMNSKIMALSNKLVYEGRLECASDRVSNAVVQLPHIKTLLLELEFRE 875
Query: 701 GTEF----------GTYSFINI--IGGREDFIYHSCRNIVEVSAVIKILQKLYKAWVGSK 748
E F+N I E N +E V + + KA
Sbjct: 876 SQESMWIKDVLEPSNPVCFLNTEKIPALETEEKGGISNWIEAKLVFHLTKLYLKAGC--- 932
Query: 749 QKVSIGVVSPYTAQVVAIRKKIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTG 808
+ IG+++PY Q+ K I + + V+V ++D +QG ++ +II+S VR N
Sbjct: 933 RPSDIGIIAPYRQQL----KMISNYFNSLSASAVEVNTVDKYQGRDKSVIIVSFVRSNID 988
Query: 809 GSIGFISKP-QRVNVALTRARHCLWILGSERTLISSESIWGALVCDAKARQCFFNADE 865
G +G + K +R+NVALTRA+H L +LG TL + + L+C+ K ++ E
Sbjct: 989 GKLGDLLKDWRRLNVALTRAKHKLIMLGCVPTLNRFDCL-EQLICNLKTENQIYDLPE 1045
>sp|Q1LXK5|M10B2_DANRE Putative helicase mov-10-B.2 OS=Danio rerio GN=mov10b.2 PE=3 SV=1
Length = 1015
Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 142/294 (48%), Gaps = 46/294 (15%)
Query: 596 IDEAAQLKESESTIPLQLAGINHA-----VLIGDECQLPAMVESKISDEAGFGRSLFERL 650
+DEA ESE+ I +AG+ +A VL GD QL ++ S ++ G SL ERL
Sbjct: 676 VDEAGHAVESETII--SVAGLLNAEKGQLVLAGDPKQLGPILRSPLAINHGLDVSLLERL 733
Query: 651 TSLNH--------------SKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEK 696
+ N SK ++N YR HP I PN FY ++ A+ S +
Sbjct: 734 MTQNDLYKRGDVEFDNRYVSKLIMN--YRSHPYILEVPNRLFYDGELKACADEISSN--- 788
Query: 697 QYLTGTEFGTYSFINI---IGGREDFIYHSCR--NIVEVSAVIKILQKLY----KAWVGS 747
QY + F I + G+++ +S NI E++ ++ L+KL K +
Sbjct: 789 QYCMWEHLPSKGFPVIFHGVPGKDERESNSPSFFNIYEINILVDYLKKLLLTQPKKGISR 848
Query: 748 KQKVSIGVVSPYTAQVVAIRKKIGFEYENKDGFTV---KVKSIDGFQGGEEDIIIISTVR 804
IG+++PY QV I++ I + + +D + KV S++ FQG E +I++STVR
Sbjct: 849 IFPKDIGIIAPYRKQVEKIKRAIDADKDFQDYMGIDNLKVGSVEEFQGQERKVIMVSTVR 908
Query: 805 CNTGG-------SIGFISKPQRVNVALTRARHCLWILGSERTLISSESIWGALV 851
+ +IGF+ +R NVA+TRA+ L ++G+ L + ES WG +
Sbjct: 909 SSVKYISLDETFNIGFLKNEKRFNVAVTRAKSLLIMVGNPMILRTDES-WGRFI 961
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 282 LIWGPPGTGKTKTVSMLLLTLLR--IKCRTLACTPTNVAITELASRVL 327
L++GPPGTGKT T+ + + + LAC P+N A +L +++
Sbjct: 552 LVFGPPGTGKTVTIVEAIKQVEKNIPDAYILACAPSNSAADQLCEKLI 599
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 140/280 (50%), Gaps = 20/280 (7%)
Query: 575 STASSSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQL-PAMVE 633
+T ++ Y+ +++P ++++EAA++ E+ + L A H +LIGD QL P+
Sbjct: 978 TTGAAKYRQILQQVEP-RIVIVEEAAEVLEAHTIATLSKA-CQHLILIGDHQQLRPSANV 1035
Query: 634 SKISDEAGFGRSLFERLTSLNHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKS 693
++ SLFERL +N LN Q+RM P I+ Y++ + + +V
Sbjct: 1036 YDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMRPEIARLLTPHIYQD-LENHPSVLKYE 1094
Query: 694 YEKQYLTGTEFGTYSFIN--IIGGREDFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKV 751
K + F ++F I G+ H +VE+ + L + ++ S+
Sbjct: 1095 QIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCQYL-----LCQEYLPSQ--- 1146
Query: 752 SIGVVSPYTAQVVAIRKKIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSI 811
I +++ YT Q+ +RK + K +KV +D +QG E DII++S VR N G +
Sbjct: 1147 -ITILTTYTGQLFCLRKLMPV----KTFAGIKVHVVDKYQGEENDIILLSLVRSNQEGKV 1201
Query: 812 GFISKPQRVNVALTRARHCLWILGSERTLISSESIWGALV 851
GF+ P R+ VAL+RA+ ++ +G+ + +++ +W ++
Sbjct: 1202 GFLQIPNRICVALSRAKKGMYCIGNMQ-MLAKVPLWSRII 1240
>sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2
Length = 1003
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 135/296 (45%), Gaps = 48/296 (16%)
Query: 594 LVIDEAAQLKESESTIPLQLAGI----------NHAVLIGDECQLPAMVESKISDEAGFG 643
+ IDEA E ES + +AG+ VL GD QL ++ S ++ + G G
Sbjct: 642 IFIDEAGHCMEPESLV--AIAGLMEVKETGDPGGQLVLAGDPRQLGPVLRSPLTQKHGLG 699
Query: 644 RSLFERLTSLNH--------------SKHLLNIQYRMHPSISLFPNLQFYRNQILDGANV 689
SL ERL + N +K L N YR HP+I PN +Y ++ A+V
Sbjct: 700 YSLLERLLTYNSLYKKGPDGYDPQFITKLLRN--YRSHPTILDIPNQLYYEGELQACADV 757
Query: 690 KSKSYEKQYLTGTEFGTYSFINIIGGREDFIYHSCR--NIVEVSAVIKILQKLYKAWVGS 747
+ ++ G + + G+++ +S N E + V L KL A
Sbjct: 758 VDRERFCRWAGLPRQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYL-KLLLAPSSK 816
Query: 748 KQKV-----SIGVVSPYTAQVVAIR---KKIGFEYENKDGFT-VKVKSIDGFQGGEEDII 798
K K S+GV+SPY QV IR K+ E D +KV S++ FQG E +I
Sbjct: 817 KGKARLSPRSVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVI 876
Query: 799 IISTVRCNTGG-------SIGFISKPQRVNVALTRARHCLWILGSERTLISSESIW 847
+ISTVR + ++GF+ P+R NVA+TRA+ L I+G+ L+ + W
Sbjct: 877 LISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIIVGNP-LLLGHDPDW 931
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 266 LACLRRLDCGH-RSGVELIWGPPGTGKTKTVSMLLLTLLR--IKCRTLACTPTNVAITEL 322
L +R + G R +I+GPPGTGKT T+ + +++ K LAC P+N L
Sbjct: 504 LQAMRHIVTGTTRPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLL 563
Query: 323 ASRV 326
R+
Sbjct: 564 CQRL 567
>sp|E1BMP7|DNA2_BOVIN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Bos taurus
GN=DNA2 PE=3 SV=3
Length = 1061
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 130/277 (46%), Gaps = 44/277 (15%)
Query: 589 KPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFE 648
K +F ++DEA+Q+ + PL + VL+GD QLP +V ++ + G SLF+
Sbjct: 754 KTFDFCIVDEASQISQPVCLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFK 811
Query: 649 RLTSLNHSKHLLNIQYRMHPSISLFPNLQFYR-----------NQILDGANVKSKSYEKQ 697
RL ++ L +QYRM+ I N Y N +++ N K E +
Sbjct: 812 RLEQNKNAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLPNFKDVKLELE 871
Query: 698 YLTGTEFGTYS----------------FINI--IGGREDFIYHSCRNIVEVSAVIKILQK 739
+ + YS F+N + E NI+E V+ +
Sbjct: 872 F-----YADYSENPWLIAAFEPNNPVCFLNTHKVPAPEQVEKGGVSNIMEAKLVVFLTSV 926
Query: 740 LYKAWVGSKQKVSIGVVSPYTAQVVAIRKKIGFEYENKDGFTVKVKSIDGFQGGEEDIII 799
KA G K IG+++PY Q+ I + ++ G V+V ++D +QG ++ I++
Sbjct: 927 FIKA--GCKPS-DIGIIAPYRQQLKVISDLLA---QSSVGM-VEVNTVDRYQGRDKSIVV 979
Query: 800 ISTVRCNTGGSIGFISKP-QRVNVALTRARHCLWILG 835
+S VR N G++G + K +R+NVA+TRA+H L +LG
Sbjct: 980 VSFVRSNEDGTLGELLKDWRRLNVAITRAKHKLILLG 1016
>sp|Q6ZQJ5|DNA2_MOUSE DNA replication ATP-dependent helicase/nuclease DNA2 OS=Mus musculus
GN=Dna2 PE=2 SV=2
Length = 1062
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 80/282 (28%), Positives = 126/282 (44%), Gaps = 44/282 (15%)
Query: 589 KPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFE 648
K +F ++DEA+Q+ + PL + VL+GD QLP +V ++ + G SLF+
Sbjct: 755 KTFDFCIVDEASQISQPVCLGPLFFS--RRFVLVGDHQQLPPLVVNREARALGMSESLFK 812
Query: 649 RLTSLNHSKHLLNIQYRMHPSISLFPNLQFYR-----------NQILDGANVKSKSYEKQ 697
RL + L +QYRM+ I N Y N +L N+K Q
Sbjct: 813 RLERNESAVVQLTVQYRMNRKIMSLSNKLTYAGKLECGSDRVANAVLALPNLKDARLSLQ 872
Query: 698 ---------YLTGT--EFGTYSFINI--IGGREDFIYHSCRNIVEVSAVIKILQKLYKAW 744
+L G F+N + E N+ E ++ + KA
Sbjct: 873 LYADYSDSPWLAGVLEPDNPVCFLNTDKVPAPEQVENGGVSNVTEARLIVFLTSTFIKAG 932
Query: 745 VGSKQKVSIGVVSPYTAQVVAI-----RKKIGFEYENKDGFTVKVKSIDGFQGGEEDIII 799
IGV++PY Q+ I R +G V+V ++D +QG ++ +I+
Sbjct: 933 CSPSD---IGVIAPYRQQLRIISDLLARSSVGM---------VEVNTVDKYQGRDKSLIL 980
Query: 800 ISTVRCNTGGSIGFISKP-QRVNVALTRARHCLWILGSERTL 840
+S VR N G++G + K +R+NVALTRA+H L +LGS +L
Sbjct: 981 VSFVRSNEDGTLGELLKDWRRLNVALTRAKHKLILLGSVSSL 1022
>sp|D3ZG52|DNA2_RAT DNA replication ATP-dependent helicase/nuclease DNA2 OS=Rattus
norvegicus GN=Dna2 PE=3 SV=1
Length = 1059
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 126/280 (45%), Gaps = 42/280 (15%)
Query: 589 KPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFE 648
K +F ++DEA+Q+ + PL + VL+GD QLP +V ++ + G SLF+
Sbjct: 754 KTFDFCIVDEASQISQPICLGPLFFS--RRFVLVGDHKQLPPLVLNREARALGMSESLFK 811
Query: 649 RLTSLNHSKHLLNIQYRMHPSISLFPNLQFYR-----------NQILDGANVKSKSYE-- 695
RL + L IQYRM+ I N Y N ++ N+K E
Sbjct: 812 RLERNESAVVQLTIQYRMNRKIMSLSNKLTYEGKLECGSDRVANAVITLPNLKDVRLEFY 871
Query: 696 -----KQYLTGT--EFGTYSFINI--IGGREDFIYHSCRNIVEVSAVIKILQKLYKAWVG 746
+L G F+N + E N+ E ++ + KA
Sbjct: 872 ADYSDNPWLAGVFEPDNPVCFLNTDKVPAPEQIENGGVSNVTEARLIVFLTSTFIKAGCS 931
Query: 747 SKQKVSIGVVSPYTAQVVAI-----RKKIGFEYENKDGFTVKVKSIDGFQGGEEDIIIIS 801
IG+++PY Q+ I R +G V+V ++D +QG ++ +I++S
Sbjct: 932 PS---DIGIIAPYRQQLRTITDLLARSSVGM---------VEVNTVDKYQGRDKSLILVS 979
Query: 802 TVRCNTGGSIGFISKP-QRVNVALTRARHCLWILGSERTL 840
VR N G++G + K +R+NVA+TRA+H L +LGS +L
Sbjct: 980 FVRSNEDGTLGELLKDWRRLNVAITRAKHKLILLGSVSSL 1019
>sp|Q5ZKG3|DNA2_CHICK DNA replication ATP-dependent helicase/nuclease DNA2 OS=Gallus
gallus GN=DNA2 PE=2 SV=2
Length = 992
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 134/275 (48%), Gaps = 21/275 (7%)
Query: 589 KPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFE 648
K +F ++DEA+Q+ + PL + VL+GD QLP +V++ + + G SLF+
Sbjct: 723 KQFDFCIVDEASQISQPICLGPLFCS--KRFVLVGDHQQLPPLVQNSEARDLGMSESLFK 780
Query: 649 RLTSLNHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKSYEKQYLTGTEFGTYS 708
RL ++ L +QYRM+ I N Y ++ G+ S + T +
Sbjct: 781 RLEQNQNAVVQLTVQYRMNSKIMSLSNKLVYEGKLECGSEKVSNA------------TAN 828
Query: 709 FINIIGGREDFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIRK 768
N+ + +F S + EV K + L G + IG++SPY Q+ I
Sbjct: 829 LPNLKMLKLEFADASKTWLKEVLEPDKPVCFLNTEKAGCRPS-DIGIISPYRHQLKVITD 887
Query: 769 KIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKP-QRVNVALTRA 827
+ EN+ V+V +ID +QG ++ III+S VR + ++G + K +R+NVA+TRA
Sbjct: 888 LMARLKENR----VEVNTIDKYQGRDKSIIIVSFVRNSNDENLGALLKDWRRLNVAITRA 943
Query: 828 RHCLWILGSERTLISSESIWGALVCDAKARQCFFN 862
+H L ++G +L + L+C ++ FN
Sbjct: 944 KHKLIMVGCVPSLRRYPPLE-KLLCHLQSEAMIFN 977
>sp|P23249|MOV10_MOUSE Putative helicase MOV-10 OS=Mus musculus GN=Mov10 PE=1 SV=2
Length = 1004
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 97/352 (27%), Positives = 160/352 (45%), Gaps = 60/352 (17%)
Query: 594 LVIDEAAQLKESESTIPLQLAGI----------NHAVLIGDECQLPAMVESKISDEAGFG 643
+ IDEA E ES + +AG+ VL GD QL ++ S ++ + G G
Sbjct: 643 IFIDEAGHCMEPESLV--AIAGLMDVKETGNPGGQLVLAGDPRQLGPVLRSPLALKHGLG 700
Query: 644 RSLFERLTSLNH--------------SKHLLNIQYRMHPSISLFPNLQFYRNQILDGANV 689
SL ERL + N +K L N YR HP+I PN +Y ++ A+V
Sbjct: 701 YSLLERLLAYNSLYKKGPNGYDPQFITKLLRN--YRSHPTILDIPNQLYYDGELQACADV 758
Query: 690 KSKSYEKQYLTGTEFGTYSFINIIGGREDFIYHSCR--NIVEVSAVIKILQKLYKAWVGS 747
+ ++ + G + + G+++ +S N E + V L++L A
Sbjct: 759 VDRERFCRWEGLPQQGFPIIFHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLL-APSSK 817
Query: 748 KQKV-----SIGVVSPYTAQVVAIR---KKIGFEYENKDGFT-VKVKSIDGFQGGEEDII 798
K K ++GV+SPY QV IR K+ E D +KV S++ FQG E +I
Sbjct: 818 KGKARLSPRNVGVISPYRKQVEKIRYCITKLDRELRGLDDIKDLKVGSVEEFQGQERSVI 877
Query: 799 IISTVRCNTGG-------SIGFISKPQRVNVALTRARHCLWILGSERTLISSESIWGALV 851
+ISTVR + ++GF+ P+R NVA+TRA+ L ++G+ L+ + W +
Sbjct: 878 LISTVRSSQSFVQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNP-LLLGHDPDWKTFL 936
Query: 852 --C--DAKARQCFFNADEERNLAKARLEVSKELVEIGAESLTSTSQGGKKEE 899
C + C F AK L+ ++L++ G L+ ++ G ++ +
Sbjct: 937 EFCKENGGYTGCPFP-------AKLDLQQGQDLLQ-GLSKLSPSTSGPRRHQ 980
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 258 NESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTVSMLLLTLLR--IKCRTLACTPT 315
N Q+ AM +R R +I+GPPGTGKT T+ + +++ K LAC P+
Sbjct: 501 NPEQLQAMKHIVRGTT---RPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPS 557
Query: 316 NVAITELASRV 326
N L R+
Sbjct: 558 NSGADLLCQRL 568
>sp|Q9BXT6|M10L1_HUMAN Putative helicase Mov10l1 OS=Homo sapiens GN=MOV10L1 PE=1 SV=1
Length = 1211
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 89/323 (27%), Positives = 137/323 (42%), Gaps = 56/323 (17%)
Query: 569 RASLFFSTASSSYKLHSVEIKPLNF--LVIDEAAQLKESESTIPLQLAG--INHAVLIGD 624
R + +T SSS + + ++ +F + +DEA Q E E IPL L VL GD
Sbjct: 856 RFRIIITTCSSSGLFYQIGVRVGHFTHVFVDEAGQASEPECLIPLGLMSDISGQIVLAGD 915
Query: 625 ECQLPAMVESKISDEAGFGRSLFERLTSLN--------------HSKHLLNI---QYRMH 667
QL +++S+++ G S ERL S H+ L+ YR H
Sbjct: 916 PMQLGPVIKSRLAMAYGLNVSFLERLMSRPAYQRDENAFGACGAHNPLLVTKLVKNYRSH 975
Query: 668 PSISLFPNLQFYRNQILDGANVKSKSYEKQYLTGTEFGTYSFINIIGGREDFIYHSCR-- 725
++ + P+ FY ++ A+ + L + F I+H R
Sbjct: 976 EALLMLPSRLFYHRELEVCAD---PTVVTSLLGWEKLPKKGF--------PLIFHGVRGS 1024
Query: 726 -----------NIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIRKKIGFEY 774
N E V++ L + IGV++PY QV +KI
Sbjct: 1025 EAREGKSPSWFNPAEAVQVLRYCCLLAHSISSQVSASDIGVITPYRKQV----EKIRILL 1080
Query: 775 ENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGG------SIGFISKPQRVNVALTRAR 828
N D +KV S++ FQG E +IIISTVR N +GF+S +R NVA+TR +
Sbjct: 1081 RNVDLMDIKVGSVEEFQGQEYLVIIISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRPK 1140
Query: 829 HCLWILGSERTLISSESIWGALV 851
L +LG+ L+ + +GAL+
Sbjct: 1141 ALLIVLGNPHVLV-RDPCFGALL 1162
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 253 FSSTLNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTV--SMLLLTLLRIKCRTL 310
F+ LNE+Q LA R L R +++GPPGTGKT T+ ++L + R L
Sbjct: 741 FNPVLNENQ---KLAVKRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHFALPDSRIL 797
Query: 311 ACTPTNVA 318
C P+N A
Sbjct: 798 VCAPSNSA 805
>sp|Q5ZKD7|MOV10_CHICK Putative helicase MOV-10 OS=Gallus gallus GN=MOV10 PE=2 SV=1
Length = 967
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 142/329 (43%), Gaps = 54/329 (16%)
Query: 567 FKRASLFFSTASSSYKLHSVEIKPLNF--LVIDEAAQLKESESTIPLQLAGI-------- 616
K + +T ++ +L S P F + IDE E ES + +AG+
Sbjct: 606 LKPYRILITTLVTAGRLVSANFPPGYFSHVFIDECGHAVEPESVV--AIAGLLTTMDPDT 663
Query: 617 ----NHAVLIGDECQLPAMVESKISDEAGFGRSLFERLTSLN----HSKHLLNIQ----- 663
VL GD QL + S ++ + G G SL ERL N S N Q
Sbjct: 664 NPNGGQLVLAGDPQQLGPVPRSPLAAQHGLGTSLLERLMLHNALYAKSDEGYNPQFVTKL 723
Query: 664 ---YRMHPSISLFPNLQFYRNQI--LDGANVKSKSYEKQYLTGTEFGTYSFINIIGG--- 715
YR H +I PN FY +++ +G+ +++ Y T E I G
Sbjct: 724 LWNYRSHKAILKVPNELFYDSELKAYEGSEPDVRNF---YCTWEELPNRGVPIIFHGVCG 780
Query: 716 --REDFIYHSCRNIVEVSAVIKILQKLYKAW----VGSKQKVSIGVVSPYTAQV----VA 765
+ S N E+ V++ LQKL ++ + IG++SPY QV +A
Sbjct: 781 EDEREAKSPSFFNTAEIEVVVQYLQKLLQSQGRRGCPTISPKEIGIISPYRKQVEKIRLA 840
Query: 766 IRKKIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRC-------NTGGSIGFISKPQ 818
I K D +KV S++ FQG E +I+ISTVR + +GF+ P+
Sbjct: 841 ITSKDPVLRALPDIGQLKVGSVEEFQGQERRVILISTVRSCSEYLQLDQTFRLGFLKNPK 900
Query: 819 RVNVALTRARHCLWILGSERTLISSESIW 847
R+NVALTRA+ L ++G+ ++S + W
Sbjct: 901 RLNVALTRAKALLIVVGNA-AVLSKDPHW 928
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 277 RSGVELIWGPPGTGKTKTVSMLLLTLLRI--KCRTLACTPTNVAITELASRVLKLVKESY 334
R LI+GPPGTGKT T+ + + R LAC P+N A L R+L + Y
Sbjct: 508 RPAPYLIFGPPGTGKTVTLVEAIKQVWSCFKDARILACAPSNSAADLLCQRLLTNIAPRY 567
>sp|P51530|DNA2_HUMAN DNA replication ATP-dependent helicase/nuclease DNA2 OS=Homo sapiens
GN=DNA2 PE=1 SV=3
Length = 1060
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 126/276 (45%), Gaps = 43/276 (15%)
Query: 589 KPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGFGRSLFE 648
K +F ++DEA+Q+ + PL + VL+GD QLP +V ++ + G SLF+
Sbjct: 754 KIFDFCIVDEASQISQPICLGPLFFS--RRFVLVGDHQQLPPLVLNREARALGMSESLFK 811
Query: 649 RLTSLNHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGAN------VKSKSYEKQYLTGT 702
RL + L +QYRM+ I N Y ++ G++ + + ++ L
Sbjct: 812 RLEQNKSAVVQLTVQYRMNSKIMSLSNKLTYEGKLECGSDKVANAVINLRHFKDVKLELE 871
Query: 703 EFGTYS----------------FINI--IGGREDFIYHSCRNIVEVSAVIKILQKLYKAW 744
+ YS F+N + E N+ E ++ + KA
Sbjct: 872 FYADYSDNPWLMGVFEPNNPVCFLNTDKVPAPEQVEKGGVSNVTEAKLIVFLTSIFVKAG 931
Query: 745 VGSKQKVSIGVVSPYTAQVVAIR----KKIGFEYENKDGFTVKVKSIDGFQGGEEDIIII 800
IG+++PY Q+ I + IG V+V ++D +QG ++ I+++
Sbjct: 932 CSPS---DIGIIAPYRQQLKIINDLLARSIGM---------VEVNTVDKYQGRDKSIVLV 979
Query: 801 STVRCNTGGSIGFISKP-QRVNVALTRARHCLWILG 835
S VR N G++G + K +R+NVA+TRA+H L +LG
Sbjct: 980 SFVRSNKDGTVGELLKDWRRLNVAITRAKHKLILLG 1015
>sp|Q99MV5|M10L1_MOUSE Putative helicase Mov10l1 OS=Mus musculus GN=Mov10l1 PE=1 SV=1
Length = 1187
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 100/324 (30%), Positives = 150/324 (46%), Gaps = 55/324 (16%)
Query: 569 RASLF---FSTASSSYKLHSVEIKPLNF--LVIDEAAQLKESESTIPLQL-AGIN-HAVL 621
RAS F +T SS+ + + ++ F + +DEA Q E E IPL L + IN VL
Sbjct: 855 RASRFRIIITTCSSAGLFYQIGVRVGYFTHVFVDEAGQASEPECLIPLGLISDINGQIVL 914
Query: 622 IGDECQLPAMVESKISDEAGFGRSLFERLTS-------------------LNHSKHLLNI 662
GD QL +++S+++ G S+ ERL S L +K + N
Sbjct: 915 AGDPMQLGPVIKSRLAMAYGLNVSMLERLMSRPAYLRDENAFGACGAYNPLLVTKLVKN- 973
Query: 663 QYRMHPSISLFPNLQFYRNQILDGANVKSKS----YEKQYLTGTEFGTYSFINIIG---- 714
YR H ++ P+ FY ++ A+ K + +EK G F + G
Sbjct: 974 -YRSHSALLALPSRLFYHRELEVCADPKVVTSLLGWEKLPRKGFPL---IFHGVRGNEAR 1029
Query: 715 -GREDFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIRKKIGFE 773
GR + S V+V +L + + V SK IGV++PY QV +KI
Sbjct: 1030 EGRSPS-WFSPAEAVQVMRYCCLLARSVSSQVSSKD---IGVITPYRKQV----EKIKIL 1081
Query: 774 YENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGG------SIGFISKPQRVNVALTRA 827
N D +KV S++ FQG E +I+ISTVR N +GF+S +R NVA+TR
Sbjct: 1082 LRNVDLTDIKVGSVEEFQGQEYLVIVISTVRSNEDRFEDDRYFLGFLSNSKRFNVAITRP 1141
Query: 828 RHCLWILGSERTLISSESIWGALV 851
+ L ILG+ L+ + +GAL+
Sbjct: 1142 KALLIILGNPHVLV-RDPCFGALL 1164
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 253 FSSTLNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTV--SMLLLTLLRIKCRTL 310
F+ LNE+Q LA R L R +++GPPGTGKT T+ ++L + R L
Sbjct: 743 FNPVLNENQ---KLAVRRILSGDCRPLPYILFGPPGTGKTVTIIEAVLQVHYALPDSRIL 799
Query: 311 ACTPTNVA 318
C P+N A
Sbjct: 800 VCAPSNSA 807
>sp|Q0V8H6|MOV10_BOVIN Putative helicase MOV-10 OS=Bos taurus GN=MOV10 PE=2 SV=1
Length = 1003
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 98/345 (28%), Positives = 152/345 (44%), Gaps = 58/345 (16%)
Query: 554 PCTTSKLVLEDFCF------KRASLFFSTASSSYKLHSVE--IKPLNFLVIDEAAQLKES 605
PC DF F + + +T ++ +L S + I + IDEA E
Sbjct: 594 PCCNWDAKKGDFVFPSKKKLQEYRVLITTLITASRLVSAQFPIDHFTHIFIDEAGHAMEP 653
Query: 606 ESTIPLQLAGI----------NHAVLIGDECQLPAMVESKISDEAGFGRSLFERLTSLNH 655
ES + +AG+ VL GD QL ++ ++ + G G SL ERL + N
Sbjct: 654 ESLV--AIAGLMEVKEADNPGGQLVLAGDPRQLGPVLRCPLTQKHGLGYSLLERLLTFNA 711
Query: 656 --------------SKHLLNIQYRMHPSISLFPNLQFYRNQILDGANV--KSKSYEKQYL 699
+K L N YR HP+I PN +Y ++ A+V + + + L
Sbjct: 712 LYKKGPDGYNPQFITKLLRN--YRSHPTILDVPNRLYYDGELQACADVVDRERFCRWEGL 769
Query: 700 TGTEFGTYSFINIIGGRE-DFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKV-----SI 753
+F F ++G E + S N E + V L++L A K K S+
Sbjct: 770 PRQDFPII-FHGVMGKDEREGNSPSFFNPEEAATVTSYLKQLL-APSSKKGKARLSPRSV 827
Query: 754 GVVSPYTAQVVAIR---KKIGFEYENKDGFT-VKVKSIDGFQGGEEDIIIISTVRCNTGG 809
GV+SPY QV IR K+ + D +KV S++ FQG E +I+ISTVR +
Sbjct: 828 GVISPYRKQVEKIRYCITKLDKQLRGLDDIKDLKVGSVEEFQGQERSVILISTVRSSQSF 887
Query: 810 -------SIGFISKPQRVNVALTRARHCLWILGSERTLISSESIW 847
++GF+ P+R NVA+TRA+ L ++G+ L+ + W
Sbjct: 888 VQLDLDFNLGFLKNPKRFNVAVTRAKALLIVVGNP-LLLGHDPDW 931
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 277 RSGVELIWGPPGTGKTKTVSMLLLTLLR--IKCRTLACTPTNVAITELASRV 326
R +I+GPPGTGKT T+ + +++ K LAC P+N L R+
Sbjct: 516 RPAPYIIFGPPGTGKTVTLVEAIKQVVKHLPKAHILACAPSNSGADLLCQRL 567
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 138/280 (49%), Gaps = 20/280 (7%)
Query: 575 STASSSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQL-PAMVE 633
+T ++ Y+ +++P ++++EAA++ E+ + L A H +LIGD QL P+
Sbjct: 985 TTGAAKYRQILQKVEP-RIVIVEEAAEVLEAHTIATLSKA-CQHLILIGDHQQLRPSANV 1042
Query: 634 SKISDEAGFGRSLFERLTSLNHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKSKS 693
++ SLFERL +N LN Q+RM P I+ Y++ + + +V
Sbjct: 1043 YDLAKNFNLEVSLFERLVKVNIPFVRLNYQHRMCPEIARLLTPHIYQD-LENHPSVLKYE 1101
Query: 694 YEKQYLTGTEFGTYSFI--NIIGGREDFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKV 751
K + F ++F I G+ H +VE+ L + ++ S+
Sbjct: 1102 KIKGVSSNLFFVEHNFPEQEIQEGKSHQNQHEAHFVVELCKYF-----LCQEYLPSQ--- 1153
Query: 752 SIGVVSPYTAQVVAIRKKIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSI 811
I +++ YT Q+ +RK + K V+V +D +QG E DII++S VR N G +
Sbjct: 1154 -ITILTTYTGQLFCLRKLM----PAKTFAGVRVHVVDKYQGEENDIILLSLVRSNQEGKV 1208
Query: 812 GFISKPQRVNVALTRARHCLWILGSERTLISSESIWGALV 851
GF+ R+ VAL+RA+ ++ +G+ + +++ +W ++
Sbjct: 1209 GFLQISNRICVALSRAKKGMYCIGNMQ-MLAKVPLWSKII 1247
>sp|O74465|HRR1_SCHPO Helicase required for RNAi-mediated heterochromatin assembly 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=hrr1 PE=1 SV=2
Length = 999
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 124/260 (47%), Gaps = 25/260 (9%)
Query: 596 IDEAAQLKESESTIPLQLAGINHAVLIGDECQL-PAMVESKI-SDEAGFGRSLFERLTSL 653
I+EAA + E IP + VLIGD QL P + D S+FERL
Sbjct: 710 IEEAADVLEG-PIIPAVFPSLEQLVLIGDHKQLRPGCSTYALRQDPFNLSISMFERLVEN 768
Query: 654 NHSKHLLNIQYRMHPSI-----SLFPNLQFYRNQILD-GANVKSKSYEKQYLTGTEFGTY 707
+ L +Q RMHP I S++ +L Y +I ++ +++ F T+
Sbjct: 769 DMEYTRLTMQRRMHPQIRRLVSSVYEDLSDY--EITKYWPSIPGMGEIRRF-----FLTH 821
Query: 708 SFINIIGGREDFIYHSCRNIVEVSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIR 767
S I G + S N+ E +++ L V ++ I ++ Y AQ I
Sbjct: 822 SRIEDNDG-----FASKINLFEAQMLVQFAVYLINNGVEPQK---ITCLTFYAAQKDLIE 873
Query: 768 KKIGFEYENKDGFTVKVKSIDGFQGGEEDIIIISTVRCNTGGSIGFISKPQRVNVALTRA 827
+ + E N++ +KV ++DG+QG E D++++S VR N +GF+S P RV V+L+RA
Sbjct: 874 RLLS-ESLNREKHFIKVATVDGYQGEENDVVLLSLVRNNDRTEVGFLSSPHRVCVSLSRA 932
Query: 828 RHCLWILGSERTLISSESIW 847
R L+I G+ + + S +W
Sbjct: 933 RRGLFIFGNAQLVAESNPLW 952
>sp|P38859|DNA2_YEAST DNA replication ATP-dependent helicase/nuclease DNA2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNA2 PE=1 SV=1
Length = 1522
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 146/311 (46%), Gaps = 45/311 (14%)
Query: 583 LHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVESKISDEAGF 642
L ++ K +++++DEA+Q+ + PL+ N +++GD QLP +V++ + G
Sbjct: 1172 LFTLNEKDFDYVILDEASQISMPVALGPLRYG--NRFIMVGDHYQLPPLVKNDAARLGGL 1229
Query: 643 GRSLFERLTSLNHSKHL--LNIQYRMHPSISLFPNLQFYRNQILDGAN-VKSKSYE---- 695
SLF+ H + + L +QYRM I N Y N++ G N V ++S E
Sbjct: 1230 EESLFKTFCE-KHPESVAELTLQYRMCGDIVTLSNFLIYDNKLKCGNNEVFAQSLELPMP 1288
Query: 696 ---KQYLTGTEFGTYSFINIIGGREDFI---YHSCRNIVEVSAVIKI---------LQKL 740
+Y + +I+ + Y +C +I+E S I LQ +
Sbjct: 1289 EALSRYRNESANSKQWLEDILEPTRKVVFLNYDNCPDIIEQSEKDNITNHGEAELTLQCV 1348
Query: 741 YKAWVGSKQKVSIGVVSPYTAQVVAIRKKIGFEYENKDGFTVKVKSIDGFQGGEEDIIII 800
+ IGV++ Y AQ+ ++K F DG ++ + D FQG ++ III
Sbjct: 1349 EGMLLSGVPCEDIGVMTLYRAQLRLLKKI--FNKNVYDGL--EILTADQFQGRDKKCIII 1404
Query: 801 STVRCNT---GGSIGFISKPQRVNVALTRARHCLWILGSERTLISSESIWGALVCDAKAR 857
S VR N+ GG++ + + +RVNVA+TRA+ L I+GS+ T+ S I
Sbjct: 1405 SMVRRNSQLNGGAL--LKELRRVNVAMTRAKSKLIIIGSKSTIGSVPEI----------- 1451
Query: 858 QCFFNADEERN 868
+ F N EERN
Sbjct: 1452 KSFVNLLEERN 1462
>sp|Q9URU2|DNA2_SCHPO DNA replication ATP-dependent helicase/nuclease dna2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dna2 PE=1 SV=2
Length = 1397
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 131/277 (47%), Gaps = 32/277 (11%)
Query: 589 KPLNFLVIDEAAQLKESESTIPLQLAGINHAVLIGDECQLPAMVE-SKISDEAGFGRSLF 647
+ ++ +IDEA+Q+ PLQLA VL+GD QLP +V+ S+ S +
Sbjct: 1057 RKFDYCIIDEASQIPLPICLGPLQLA--EKFVLVGDHYQLPPLVKNSRTSKDGLSLSLFK 1114
Query: 648 ERLTSLNHSKHLLNIQYRMHPSISLFPNLQFYRNQILDGANVKS-------KSYEKQYLT 700
+ L +QYRM+ I+ + Y ++ G+ S K++ L
Sbjct: 1115 LLSEKHPEAVTTLRLQYRMNEDINSLSSELIYGGNLVCGSKTISQKKLILPKAHLSDGLP 1174
Query: 701 GTEFGTYSFINIIGGREDFIYHSCRNIVEV-SAVIKILQKLYKAWV-----------GSK 748
+ + +I I+ + +I+ V S IL+ +A++ G K
Sbjct: 1175 DSSSSLHWVNKLINPSHSVIFFNTDDILGVESKTNNILENHTEAFLIEQAVSSFLERGVK 1234
Query: 749 QKVSIGVVSPYTAQVVAIRKKIGFEYENKDGFT-VKVKSIDGFQGGEEDIIIISTVRCNT 807
Q SIG++S Y +QV + K N FT +++ ++D +QG ++DII+IS VR N+
Sbjct: 1235 QS-SIGIISIYKSQVELLSK-------NLKSFTEIEINTVDRYQGRDKDIILISFVRSNS 1286
Query: 808 GGSIGFISKP-QRVNVALTRARHCLWILGSERTLISS 843
+G + + R+NVAL+RA+ + GS TL SS
Sbjct: 1287 KNLVGELLRDWHRLNVALSRAKVKCIMFGSLSTLSSS 1323
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 251 PSFSSTLNESQVGAMLACLRRLDCGHRSGVELIWGPPGTGKTKTVSMLL 299
P F LNE Q+ A+ C H S LI G PGTGKT T+S L+
Sbjct: 926 PEFLKCLNEDQITALKKCHA---AEHYS---LILGMPGTGKTTTISSLI 968
>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain OS=Danio rerio GN=helz PE=2
SV=1
Length = 1860
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 140/309 (45%), Gaps = 49/309 (15%)
Query: 568 KRASLFFSTASSSYKLHSVEIKPLNF--LVIDEAAQLKESESTIPLQLA-GINHAVLIGD 624
+R + T S+S L ++++P F +++DEAAQ E E+ +PL LA VL GD
Sbjct: 756 ERHRVVVVTLSTSQYLCQLDLEPGIFTHILLDEAAQAMECETIMPLALAVKSTRVVLAGD 815
Query: 625 ECQLPAMVESKISDEAGFGRSLFERLTSLNHSKH----LLNIQYRMHPSISLFPNLQFYR 680
QL V S+ + E SL +RL S++ LL YR H +I + + FY
Sbjct: 816 HMQLSPFVYSEFARERNLHVSLLDRLYEHYPSEYPCRILLCENYRSHEAIINYTSDLFYE 875
Query: 681 NQILDGANVKSKSYEKQYLTGTEFGTYSFINIIGGREDFIYHSCR---NIVEVSAVIKIL 737
+++ A+ K ++ +F +F G ED + N EV +++ +
Sbjct: 876 GKLM--ASGKQPPHK-------DFYPLTFFTARG--EDVQEKNSTAYYNNAEVFEIVERV 924
Query: 738 QKLYKAWV---GSKQKVSIGVVSPYTAQVVAIRKKIGFEYENKDGFTVKVKSIDGFQGGE 794
+++ K W G ++ SIGVVSPY QV IR E K V V+ + QG +
Sbjct: 925 EEMRKKWPVSWGKLEEGSIGVVSPYADQVFRIRA----ELRKKRMSEVSVERVLNVQGKQ 980
Query: 795 EDIIIISTVR----CNTGGSI-----------------GFISKPQRVNVALTRARHCLWI 833
++ +STVR C + GF+S + +N A+TRA+ + +
Sbjct: 981 FRVLFLSTVRTRHTCKHKQTAIKRKEQLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAV 1040
Query: 834 LGSERTLIS 842
+G L S
Sbjct: 1041 VGDPIALCS 1049
>sp|Q09449|YQ12_CAEEL Uncharacterized ATP-dependent helicase C05C10.2 OS=Caenorhabditis
elegans GN=C05C10.2 PE=2 SV=1
Length = 1551
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/317 (27%), Positives = 140/317 (44%), Gaps = 29/317 (9%)
Query: 560 LVLEDFCFKRASLFFSTASSSYKLHSVEIKPLNFLVIDEAAQLKESESTIPLQLAGINHA 619
LV F + L TA S+ L ++ ++ + + IDEA+QL +E T+ L N+A
Sbjct: 1173 LVEAFFMIYKPDLVMVTADSAKGLLNI-LRDVCAVQIDEASQL--AECTLLGLLKSFNNA 1229
Query: 620 V--LIGDECQLPAM----VESKISDEAGFGRSLFERLTSLNHSKHLLNIQYRMHPSISLF 673
LIGD QLP +E K+ D G G ++ + L YR HP +
Sbjct: 1230 SFGLIGDIHQLPPYCEEGLEGKLKD-FGIGNTMERAIKEKMFPVCTLRNVYRCHPKTTEL 1288
Query: 674 PNLQFYRNQILDGANVKSKS----YEKQYLTGTEFGTYSFINIIGGREDFIYHSCRNIVE 729
+ FY ++ G + ++S + +F F+N G + S N E
Sbjct: 1289 LSELFYDGALVSGVSELARSDFMTKRDDFWPNPKFPMM-FVNNTGASTK-MGTSTSNSSE 1346
Query: 730 VSAVIKILQKLYKAWVGSKQKVSIGVVSPYTAQVVAIRKKIGFEYENKDGFTVKVKSIDG 789
S V +I+Q L IGV+S Y+AQ + E+ G VK ++D
Sbjct: 1347 KSIVGEIVQNLINDPRNPVNPSDIGVISFYSAQTSILT-------EHLRGSGVKCGTVDA 1399
Query: 790 FQGGEEDIIIISTVRCNTGGSIG-FISKPQRVNVALTRARHCLWILGSERTLISSESIWG 848
FQG E++III+ C+T I F+ R+NVA++RA+ I+G L + + W
Sbjct: 1400 FQGSEKEIIIM----CSTNERISDFMQLSNRLNVAMSRAKQVTIIIGHLDGLRRA-NYWS 1454
Query: 849 ALVCDAKARQCFFNADE 865
+V + NA++
Sbjct: 1455 TIVNKIEQNGNLVNAND 1471
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 659,610,031
Number of Sequences: 539616
Number of extensions: 28075958
Number of successful extensions: 73066
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 72707
Number of HSP's gapped (non-prelim): 257
length of query: 1825
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1693
effective length of database: 120,340,147
effective search space: 203735868871
effective search space used: 203735868871
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)