BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000230
(1822 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 57/122 (46%)
Query: 877 DKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 936
D+ K +DA N + AL+ G H A + LAV+ G + +A ++AL+I
Sbjct: 81 DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140
Query: 937 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYIN 996
E+ LG DHPD K +LA+ E Y RAL + GP PN A T N
Sbjct: 141 REKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNN 200
Query: 997 VA 998
+A
Sbjct: 201 LA 202
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%)
Query: 921 GDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLH 980
G + A ++AL+ E+ G DHPD LA+ Y + A +N AL +
Sbjct: 41 GRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100
Query: 981 LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIA 1040
T G HP AAT N+A++ G A AL+ +++LG DH A + +A
Sbjct: 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA 160
Query: 1041 IALSLMEAYSLSVQHEQTTLQILQAKLGSED 1071
+ Y + Q L+I Q KLG +D
Sbjct: 161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 69/163 (42%)
Query: 878 KGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 937
+G+ E AV +AL L G H A ++LA+V + A AL I
Sbjct: 40 QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR 99
Query: 938 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINV 997
E+ LG DHP + +LAV Y + + A RAL + G HP+ A N+
Sbjct: 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL 159
Query: 998 AMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIA 1040
A++ + G Y AL+ Q LG D A + + +A
Sbjct: 160 ALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLA 202
Score = 38.5 bits (88), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 878 KGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 937
+GK ++A +AL V G H A + LA++ + G + + Y Q+AL+I
Sbjct: 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183
Query: 938 ERELGLDHPDTMKSYGDLAVFY 959
+ +LG D P+ K+ +LA Y
Sbjct: 184 QTKLGPDDPNVAKTKNNLASCY 205
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%)
Query: 877 DKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 936
D+ K ++A + + AL+ G H A + LAV+ G + +A ++AL+I
Sbjct: 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114
Query: 937 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYIN 996
E+ LG HPD K +LA+ E Y RAL + GP PN A T N
Sbjct: 115 REKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174
Query: 997 VA 998
+A
Sbjct: 175 LA 176
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 65/157 (41%)
Query: 884 AVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943
AV +AL L G H A ++LA+V + +A AL I E+ LG
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEG 1003
DHP + +LAV Y + + A RAL + G HP+ A N+A++ +
Sbjct: 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQN 139
Query: 1004 LGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIA 1040
G Y AL+ LG D A + + +A
Sbjct: 140 QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 81/190 (42%), Gaps = 19/190 (10%)
Query: 931 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNT 990
++AL+ E+ G DHPD LA+ Y + A +N AL + T G HP
Sbjct: 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 991 AATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYS 1050
AAT N+A++ G A AL+ +++LG H A +A+ L + +
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLAL-LCQNQGKA 143
Query: 1051 LSVQ-HEQTTLQILQAKLGSED-----------------LRTQDAAAWLEYFESKALEQQ 1092
V+ + + L+I +LG +D + QDA + ++A E++
Sbjct: 144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203
Query: 1093 EAARNGTPKP 1102
+ NG KP
Sbjct: 204 FGSVNGDNKP 213
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 56/122 (45%)
Query: 877 DKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 936
D+ K ++A + + AL+ G H A + LAV+ G + +A ++AL+I
Sbjct: 55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114
Query: 937 NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYIN 996
E+ LG HPD K +LA+ E Y RAL + GP PN A T N
Sbjct: 115 REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174
Query: 997 VA 998
+A
Sbjct: 175 LA 176
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 65/157 (41%)
Query: 884 AVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943
AV +AL L G H A ++LA+V + +A AL I E+ LG
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEG 1003
DHP + +LAV Y + + A RAL + G HP+ A N+A++ +
Sbjct: 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN 139
Query: 1004 LGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIA 1040
G Y AL+ LG D A + + +A
Sbjct: 140 QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 19/190 (10%)
Query: 931 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNT 990
++AL+ E+ G DHPD LA+ Y + A +N AL + T G HP
Sbjct: 25 KQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84
Query: 991 AATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYS 1050
AAT N+A++ G A AL+ +++LG H A + +A+ L + +
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLAL-LCQNQGKA 143
Query: 1051 LSVQ-HEQTTLQILQAKLGSED-----------------LRTQDAAAWLEYFESKALEQQ 1092
V+ + + L+I +LG +D + QDA + ++A E++
Sbjct: 144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203
Query: 1093 EAARNGTPKP 1102
+ NG KP
Sbjct: 204 FGSVNGDNKP 213
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 43.9 bits (102), Expect = 8e-04, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 66/146 (45%), Gaps = 24/146 (16%)
Query: 878 KGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 937
+G ++A+ Y KAL +A A+ L Y GD+++A Y QKAL+++
Sbjct: 14 QGDYDEAIEYYQKALE--------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 938 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINV 997
P + +++ +L YY+ + A++Y +AL L P +A + N+
Sbjct: 66 --------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNL 109
Query: 998 AMMEEGLGNVHVALRYLHEALKCNQR 1023
G+ A+ Y +AL+ + R
Sbjct: 110 GNAYYKQGDYDEAIEYYQKALELDPR 135
Score = 42.4 bits (98), Expect = 0.003, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 24/156 (15%)
Query: 907 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE 966
A A+ L Y GD+++A Y QKAL+++ P + +++ +L YY+ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDYD 52
Query: 967 LALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLG 1026
A++Y +AL L P +A + N+ G+ A+ Y +AL+ + R
Sbjct: 53 EAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--- 101
Query: 1027 ADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062
+A +++ + A Y ++++ Q L++
Sbjct: 102 -----SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 906 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 965
+A A+ L Y GD+++A Y QKAL++ +P+ +++ +L YY+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------YPNNAEAWYNLGNAYYKQGDY 59
Query: 966 ELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALK 1019
+ A++Y +AL L +PN A + N+ G+ A+ Y +AL+
Sbjct: 60 DEAIEYYQKALEL--------YPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr
Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr
Motif
Length = 125
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 16/114 (14%)
Query: 906 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 965
+A A+ L Y GD+++A Y QKAL+++ P+ +++ +L YY+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDY 59
Query: 966 ELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALK 1019
+ A++Y +AL L PN A + N+ G+ A+ Y +AL+
Sbjct: 60 DEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 34.7 bits (78), Expect = 0.44, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 906 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 965
+A A+ L Y GD+++A Y QKAL+++ P + +++ +L YY+
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PRSAEAWYNLGNAYYKQGDY 53
Query: 966 ELALKYVNRALYL 978
+ A++Y +AL L
Sbjct: 54 DEAIEYYQKALEL 66
Score = 31.2 bits (69), Expect = 6.3, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 878 KGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 937
+G ++A+ Y KAL +A A+ L Y GD+++A Y QKAL+++
Sbjct: 16 QGDYDEAIEYYQKALE--------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 67
Query: 938 ER 939
R
Sbjct: 68 PR 69
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 34.7 bits (78), Expect = 0.49, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 906 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 965
+A A+ L Y GD+++A Y QKAL+++ P+ +++ +L YY+
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDY 59
Query: 966 ELALKYVNRALYL 978
+ A++Y +AL L
Sbjct: 60 DEAIEYYQKALEL 72
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 34.7 bits (78), Expect = 0.52, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
Query: 906 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 965
+A A+ L Y GD+ +A Y QKAL+++ P+ ++ +L YY+
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELD--------PNNASAWYNLGNAYYKQGDY 59
Query: 966 ELALKYVNRALYL 978
+ A++Y +AL L
Sbjct: 60 QKAIEYYQKALEL 72
>pdb|3BGW|A Chain A, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|B Chain B, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|C Chain C, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|D Chain D, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|E Chain E, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
pdb|3BGW|F Chain F, The Structure Of A Dnab-like Replicative Helicase And Its
Interactions With Primase
Length = 444
Score = 34.3 bits (77), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 13/104 (12%)
Query: 1146 QTCETVSDEYQKDEIVSPTSPVVENSSD---------KENKSEVHLLEPKIEKSDSGLPD 1196
Q C+TVS+ +QK + +S ++EN ++ +E SE+ +E D G D
Sbjct: 101 QHCQTVSEYFQKRKAISIAQQIIENVNESDDGPVKPIQEAVSELMEIEASGTDDDDGSID 160
Query: 1197 QSIMIKNDDLEQEENSDEGWQEAVPKGRSLTARRSSGSRRPSLA 1240
++++ +++E S +G VP G + R + G +R +
Sbjct: 161 EALVTVYEEIE----SADGNITGVPSGFTELDRMTYGYKRRNFV 200
>pdb|2OBE|A Chain A, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
pdb|2OBE|B Chain B, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
pdb|2OBE|C Chain C, Crystal Structure Of Chimpanzee Adenovirus (Type 68SIMIAN
25) MAJOR Coat Protein Hexon
Length = 932
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 988 PNTAATYINVAMME--EGLGNVHVALRYLHEALKCNQRLLGAD-----HIQTAASYHAIA 1040
P+ +YIN+ + + NV+ + + L+ LLG HIQ + AI
Sbjct: 491 PSLVDSYINIGARWSLDPMDNVNPFNHHRNAGLRYRSMLLGNGRYVPFHIQVPQKFFAIK 550
Query: 1041 IALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAA 1078
L L +Y+ + ILQ+ LG+ DLRT A+
Sbjct: 551 SLLLLPGSYTYEWNFRKDVNMILQSSLGN-DLRTDGAS 587
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of
Sir2
Length = 361
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 213 IRRSTRPFLEDKTDDDFFQIDVRVCSGKPMTIVASREGFYPAGKRPLLFHSLVSLLQ 269
+ R P+ E D DFFQ D P+ + YP RP FH L+ L Q
Sbjct: 59 LARLKLPYPEAVFDVDFFQSD-------PLPFYTLAKELYPGNFRPSKFHYLLKLFQ 108
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|B Chain B, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
pdb|1Q17|C Chain C, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 300
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 213 IRRSTRPFLEDKTDDDFFQIDVRVCSGKPMTIVASREGFYPAGKRPLLFHSLVSLLQ 269
+ R P+ E D DFFQ D P+ + YP RP FH L+ L Q
Sbjct: 61 LARLKLPYPEAVFDVDFFQSD-------PLPFYTLAKELYPGNFRPSKFHYLLKLFQ 110
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate
Analogue Adp-Hpd, And And Aceylated H4 Peptide
pdb|2OD9|A Chain A, Structural Basis For Nicotinamide Inhibition And Base
Exchange In Sir2 Enzymes
pdb|2QQF|A Chain A, Hst2 Bound To Adp-Hpd And Acetylated Histone H4
pdb|2QQG|A Chain A, Hst2 Bound To Adp-hpd, Acetyllated Histone H4 And
Nicotinamide
Length = 308
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 213 IRRSTRPFLEDKTDDDFFQIDVRVCSGKPMTIVASREGFYPAGKRPLLFHSLVSLLQ 269
+ R P+ E D DFFQ D P+ + YP RP FH L+ L Q
Sbjct: 69 LARLKLPYPEAVFDVDFFQSD-------PLPFYTLAKELYPGNFRPSKFHYLLKLFQ 118
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
pdb|1SZD|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose
Transfer By Nad+-Dependent Sir2 HistonePROTEIN
DEACETYLASES
Length = 297
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 213 IRRSTRPFLEDKTDDDFFQIDVRVCSGKPMTIVASREGFYPAGKRPLLFHSLVSLLQ 269
+ R P+ E D DFFQ D P+ + YP RP FH L+ L Q
Sbjct: 58 LARLKLPYPEAVFDVDFFQSD-------PLPFYTLAKELYPGNFRPSKFHYLLKLFQ 107
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary
Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide
Length = 289
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 213 IRRSTRPFLEDKTDDDFFQIDVRVCSGKPMTIVASREGFYPAGKRPLLFHSLVSLLQ 269
+ R P+ E D DFFQ D P+ + YP RP FH L+ L Q
Sbjct: 51 LARLKLPYPEAVFDVDFFQSD-------PLPFYTLAKELYPGNFRPSKFHYLLKLFQ 100
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To
Carba-Nad+ And An Acetylated H4 Peptide
Length = 308
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 213 IRRSTRPFLEDKTDDDFFQIDVRVCSGKPMTIVASREGFYPAGKRPLLFHSLVSLLQ 269
+ R P+ E D DFFQ D P+ + YP RP FH L+ L Q
Sbjct: 69 LARLKLPYPEAVFDVDFFQSD-------PLPFYTLAKELYPGNFRPSKFHYLLKLFQ 118
>pdb|2B5O|A Chain A, Ferredoxin-nadp Reductase
pdb|2B5O|B Chain B, Ferredoxin-nadp Reductase
Length = 402
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 1327 ASSMGVQA-AGKLFSYKEVALAPPG----TIVKAVAEQFPKGNPAIESSSQVNQEAAMSV 1381
A+S G Q+ A +LF Y+ V L G ++V+ F +++NQE
Sbjct: 8 ANSTGNQSYANRLFIYEVVGLGGDGRNENSLVRKSGTTF-----ITVPYARMNQEMQRIT 62
Query: 1382 VTPGDVTAVKPAEENQLVVSEG 1403
G + +++PAE+ +VSEG
Sbjct: 63 KLGGKIVSIRPAEDAAQIVSEG 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,090,949
Number of Sequences: 62578
Number of extensions: 2101084
Number of successful extensions: 3736
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3714
Number of HSP's gapped (non-prelim): 39
length of query: 1822
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1709
effective length of database: 7,902,023
effective search space: 13504557307
effective search space used: 13504557307
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)