Query 000230
Match_columns 1822
No_of_seqs 800 out of 4687
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 00:27:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1839 Uncharacterized protei 100.0 5E-121 1E-125 1167.5 50.9 992 25-1096 29-1162(1236)
2 PF13236 CLU: Clustered mitoch 100.0 4.2E-43 9.1E-48 396.5 12.4 203 344-568 1-217 (221)
3 KOG1839 Uncharacterized protei 100.0 9.4E-44 2E-48 457.6 5.0 906 188-1244 49-977 (1236)
4 KOG1840 Kinesin light chain [C 99.9 2.7E-24 5.8E-29 267.1 33.3 289 862-1155 196-495 (508)
5 KOG1840 Kinesin light chain [C 99.9 4E-22 8.8E-27 247.8 28.3 230 865-1095 241-470 (508)
6 PF15044 CLU_N: Mitochondrial 99.9 6.7E-23 1.5E-27 194.1 5.8 72 45-118 1-76 (76)
7 KOG4626 O-linked N-acetylgluco 99.8 3.5E-19 7.6E-24 213.7 24.8 257 845-1152 231-493 (966)
8 KOG4626 O-linked N-acetylgluco 99.8 1.1E-19 2.4E-24 217.8 15.1 240 854-1139 207-451 (966)
9 PF12807 eIF3_p135: Translatio 99.8 3.7E-20 7.9E-25 203.1 8.7 118 720-838 2-169 (169)
10 TIGR00990 3a0801s09 mitochondr 99.7 1E-14 2.3E-19 190.9 34.8 253 847-1142 309-574 (615)
11 TIGR00990 3a0801s09 mitochondr 99.6 1.6E-13 3.6E-18 179.7 30.8 183 922-1142 309-499 (615)
12 KOG1130 Predicted G-alpha GTPa 99.5 1.9E-13 4.1E-18 159.1 18.9 291 865-1165 55-372 (639)
13 KOG1155 Anaphase-promoting com 99.5 6.8E-12 1.5E-16 149.3 28.2 199 864-1095 329-527 (559)
14 TIGR02521 type_IV_pilW type IV 99.5 1.4E-11 2.9E-16 137.9 25.6 170 863-1062 29-198 (234)
15 KOG1130 Predicted G-alpha GTPa 99.4 4.7E-12 1E-16 147.8 20.2 210 853-1070 123-352 (639)
16 PRK15174 Vi polysaccharide exp 99.4 1.1E-11 2.5E-16 163.1 25.4 165 952-1145 215-387 (656)
17 PRK11788 tetratricopeptide rep 99.4 3.1E-11 6.8E-16 148.7 27.6 254 848-1139 51-311 (389)
18 KOG2002 TPR-containing nuclear 99.4 6.5E-11 1.4E-15 151.0 29.6 241 823-1082 251-537 (1018)
19 KOG2003 TPR repeat-containing 99.4 3.4E-11 7.3E-16 141.3 24.7 248 843-1139 430-689 (840)
20 COG3063 PilF Tfp pilus assembl 99.4 1.5E-11 3.2E-16 136.7 19.0 168 864-1061 34-201 (250)
21 PRK11788 tetratricopeptide rep 99.4 4.4E-11 9.5E-16 147.4 23.1 237 865-1139 35-278 (389)
22 PRK09782 bacteriophage N4 rece 99.3 8.6E-11 1.9E-15 158.9 26.7 198 847-1082 524-721 (987)
23 PRK15174 Vi polysaccharide exp 99.3 9.2E-11 2E-15 154.7 26.0 190 846-1067 191-386 (656)
24 PRK11447 cellulose synthase su 99.3 8.8E-11 1.9E-15 164.2 27.3 196 846-1062 283-524 (1157)
25 KOG1126 DNA-binding cell divis 99.3 1.2E-11 2.6E-16 153.3 16.2 170 861-1062 417-586 (638)
26 KOG0547 Translocase of outer m 99.3 2.1E-10 4.4E-15 137.5 25.0 238 864-1142 325-569 (606)
27 TIGR02917 PEP_TPR_lipo putativ 99.3 3.6E-10 7.8E-15 151.7 29.1 168 864-1062 55-222 (899)
28 PRK11189 lipoprotein NlpI; Pro 99.3 6.6E-10 1.4E-14 133.1 28.2 193 863-1084 62-283 (296)
29 PRK11447 cellulose synthase su 99.3 1.4E-10 3.1E-15 162.1 24.7 264 847-1141 366-702 (1157)
30 TIGR02521 type_IV_pilW type IV 99.3 2.5E-10 5.4E-15 127.7 20.7 170 862-1061 62-231 (234)
31 PRK12370 invasion protein regu 99.3 3E-10 6.5E-15 147.3 24.1 187 844-1061 273-469 (553)
32 KOG1126 DNA-binding cell divis 99.3 1.4E-10 3E-15 144.2 19.7 181 850-1062 439-620 (638)
33 TIGR02917 PEP_TPR_lipo putativ 99.3 2.8E-10 6.2E-15 152.7 24.7 168 863-1062 497-664 (899)
34 TIGR03302 OM_YfiO outer membra 99.3 4E-10 8.8E-15 129.7 22.5 179 863-1061 31-231 (235)
35 PRK09782 bacteriophage N4 rece 99.3 3.3E-10 7.2E-15 153.3 24.9 224 864-1140 476-707 (987)
36 PRK12370 invasion protein regu 99.2 3.3E-10 7.1E-15 146.9 22.5 167 863-1061 256-434 (553)
37 PRK11189 lipoprotein NlpI; Pro 99.2 6.9E-10 1.5E-14 133.0 23.6 225 879-1139 40-265 (296)
38 KOG2002 TPR-containing nuclear 99.2 2.2E-09 4.8E-14 137.4 26.1 255 864-1150 163-453 (1018)
39 KOG1173 Anaphase-promoting com 99.2 3.2E-10 7E-15 138.3 17.0 175 863-1062 310-484 (611)
40 KOG1129 TPR repeat-containing 99.2 1.8E-10 3.8E-15 132.0 13.7 202 852-1090 243-444 (478)
41 COG3063 PilF Tfp pilus assembl 99.2 3.2E-10 7E-15 126.2 14.9 139 902-1062 30-168 (250)
42 PF05303 DUF727: Protein of un 99.1 7.6E-11 1.6E-15 119.4 5.6 63 226-288 29-105 (108)
43 PRK10049 pgaA outer membrane p 99.1 2.6E-08 5.6E-13 134.1 29.9 252 851-1139 34-339 (765)
44 PRK04841 transcriptional regul 99.1 5.1E-08 1.1E-12 133.7 32.8 268 865-1142 452-723 (903)
45 KOG1125 TPR repeat-containing 99.0 5.9E-09 1.3E-13 128.2 19.9 245 868-1181 288-576 (579)
46 PF13424 TPR_12: Tetratricopep 99.0 1E-09 2.2E-14 104.8 10.4 78 987-1065 1-78 (78)
47 PRK10049 pgaA outer membrane p 99.0 3.3E-08 7.2E-13 133.0 28.5 158 867-1057 17-174 (765)
48 KOG1125 TPR repeat-containing 99.0 1.6E-09 3.5E-14 133.0 14.1 200 845-1068 298-533 (579)
49 KOG0547 Translocase of outer m 99.0 3.5E-09 7.5E-14 127.2 16.3 196 867-1096 362-558 (606)
50 PF13424 TPR_12: Tetratricopep 99.0 1.1E-09 2.5E-14 104.4 9.8 78 945-1023 1-78 (78)
51 KOG2003 TPR repeat-containing 99.0 9.1E-09 2E-13 121.3 19.0 230 867-1137 421-653 (840)
52 KOG1173 Anaphase-promoting com 99.0 4.9E-09 1.1E-13 128.2 17.3 182 856-1062 337-518 (611)
53 PF14938 SNAP: Soluble NSF att 99.0 1.5E-08 3.3E-13 120.6 20.3 189 865-1061 35-224 (282)
54 KOG1129 TPR repeat-containing 99.0 4.1E-09 8.8E-14 121.1 14.0 183 851-1062 275-458 (478)
55 KOG0624 dsRNA-activated protei 99.0 5.5E-08 1.2E-12 112.6 22.8 271 863-1170 36-322 (504)
56 KOG1155 Anaphase-promoting com 99.0 5.5E-08 1.2E-12 116.7 23.6 187 850-1061 348-535 (559)
57 PF14938 SNAP: Soluble NSF att 99.0 2.1E-08 4.6E-13 119.5 20.0 154 902-1062 30-184 (282)
58 TIGR03302 OM_YfiO outer membra 99.0 5.4E-08 1.2E-12 112.1 22.4 145 903-1062 29-195 (235)
59 PRK04841 transcriptional regul 99.0 1.7E-07 3.6E-12 128.8 30.6 189 865-1060 491-680 (903)
60 PF13429 TPR_15: Tetratricopep 98.9 7.9E-09 1.7E-13 122.6 12.9 170 864-1063 109-278 (280)
61 PRK15179 Vi polysaccharide bio 98.9 7.1E-08 1.5E-12 126.8 22.3 165 870-1063 54-218 (694)
62 cd05804 StaR_like StaR_like; a 98.9 2E-07 4.4E-12 113.7 24.5 173 864-1061 42-214 (355)
63 PRK15359 type III secretion sy 98.9 2.3E-08 5E-13 107.4 13.8 126 885-1045 13-138 (144)
64 CHL00033 ycf3 photosystem I as 98.9 2.2E-08 4.7E-13 110.0 13.7 132 946-1083 32-163 (168)
65 PF13429 TPR_15: Tetratricopep 98.9 1.2E-08 2.7E-13 120.9 12.6 249 846-1141 22-279 (280)
66 PRK15179 Vi polysaccharide bio 98.9 6.1E-08 1.3E-12 127.4 19.9 135 863-1021 84-218 (694)
67 KOG0550 Molecular chaperone (D 98.8 7.8E-09 1.7E-13 122.5 8.6 289 863-1225 47-346 (486)
68 cd05804 StaR_like StaR_like; a 98.8 3.3E-07 7.2E-12 111.8 22.7 175 863-1063 4-178 (355)
69 CHL00033 ycf3 photosystem I as 98.8 1.2E-07 2.6E-12 104.2 16.2 142 879-1032 13-154 (168)
70 COG2956 Predicted N-acetylgluc 98.8 1.3E-06 2.8E-11 101.6 24.8 191 847-1063 84-279 (389)
71 COG2956 Predicted N-acetylgluc 98.8 1.1E-06 2.4E-11 102.1 23.2 203 861-1093 65-267 (389)
72 KOG0548 Molecular co-chaperone 98.7 2.7E-07 5.8E-12 113.2 19.0 199 863-1086 255-471 (539)
73 PRK15359 type III secretion sy 98.7 7.9E-08 1.7E-12 103.3 13.0 113 867-1003 26-138 (144)
74 PRK10370 formate-dependent nit 98.7 5.6E-07 1.2E-11 101.9 20.3 156 871-1073 22-180 (198)
75 TIGR00540 hemY_coli hemY prote 98.7 2.3E-06 5E-11 107.4 27.1 263 847-1142 99-402 (409)
76 PRK10370 formate-dependent nit 98.7 3E-07 6.5E-12 104.1 17.0 120 878-1021 52-174 (198)
77 PLN03218 maturation of RBCL 1; 98.7 2.2E-06 4.7E-11 117.7 28.3 170 864-1059 506-675 (1060)
78 KOG0550 Molecular chaperone (D 98.7 2.3E-07 5E-12 110.3 16.2 191 847-1063 147-351 (486)
79 KOG1941 Acetylcholine receptor 98.7 4.7E-07 1E-11 105.7 18.0 199 866-1071 123-328 (518)
80 PRK02603 photosystem I assembl 98.7 9.1E-07 2E-11 97.7 18.9 129 943-1084 29-164 (172)
81 KOG4162 Predicted calmodulin-b 98.7 1.1E-05 2.4E-10 102.5 30.3 264 819-1142 455-786 (799)
82 KOG1941 Acetylcholine receptor 98.7 9E-07 1.9E-11 103.5 19.2 194 864-1064 82-277 (518)
83 KOG0624 dsRNA-activated protei 98.6 5.1E-06 1.1E-10 96.8 24.1 204 858-1091 65-276 (504)
84 KOG0553 TPR repeat-containing 98.6 1.9E-07 4.2E-12 108.2 12.7 121 863-1007 79-199 (304)
85 PRK14574 hmsH outer membrane p 98.6 2.6E-06 5.7E-11 114.1 23.9 173 864-1074 33-205 (822)
86 TIGR02552 LcrH_SycD type III s 98.6 7.2E-07 1.6E-11 93.6 15.0 112 886-1021 4-115 (135)
87 PLN03218 maturation of RBCL 1; 98.6 1.7E-05 3.7E-10 109.1 32.1 252 847-1138 522-782 (1060)
88 PRK10747 putative protoheme IX 98.6 6.2E-06 1.3E-10 103.2 25.4 233 867-1140 120-391 (398)
89 PRK15363 pathogenicity island 98.6 1.2E-06 2.6E-11 94.4 15.8 102 904-1021 32-133 (157)
90 COG5010 TadD Flp pilus assembl 98.6 1.2E-06 2.6E-11 100.1 16.6 171 854-1057 56-226 (257)
91 PRK02603 photosystem I assembl 98.6 1.7E-06 3.7E-11 95.6 17.6 117 902-1031 30-153 (172)
92 PRK10747 putative protoheme IX 98.6 1.1E-05 2.3E-10 101.1 25.9 237 864-1139 83-357 (398)
93 KOG2076 RNA polymerase III tra 98.5 5.7E-06 1.2E-10 106.6 23.4 184 864-1075 138-322 (895)
94 KOG0548 Molecular co-chaperone 98.5 2E-06 4.3E-11 105.8 18.5 181 864-1062 223-421 (539)
95 KOG1174 Anaphase-promoting com 98.5 8.2E-06 1.8E-10 97.1 22.6 171 862-1064 229-399 (564)
96 PF13525 YfiO: Outer membrane 98.5 6.8E-06 1.5E-10 93.5 21.5 170 864-1053 4-198 (203)
97 TIGR00540 hemY_coli hemY prote 98.5 4.5E-06 9.8E-11 104.8 22.1 238 864-1137 83-362 (409)
98 TIGR02552 LcrH_SycD type III s 98.5 1.3E-06 2.8E-11 91.7 14.0 102 945-1062 13-114 (135)
99 KOG2076 RNA polymerase III tra 98.5 1.3E-05 2.8E-10 103.4 25.0 243 866-1134 208-507 (895)
100 KOG1174 Anaphase-promoting com 98.5 3.4E-06 7.4E-11 100.2 17.6 181 864-1085 333-515 (564)
101 PRK15363 pathogenicity island 98.5 2.5E-06 5.3E-11 92.0 14.9 101 863-979 33-133 (157)
102 PLN03088 SGT1, suppressor of 98.5 1.2E-06 2.6E-11 107.9 14.3 96 867-978 4-99 (356)
103 PRK10866 outer membrane biogen 98.5 1.7E-05 3.7E-10 92.7 22.7 179 864-1057 31-236 (243)
104 PRK14574 hmsH outer membrane p 98.4 2.2E-05 4.8E-10 105.4 26.3 180 846-1058 48-228 (822)
105 TIGR02795 tol_pal_ybgF tol-pal 98.4 2.5E-06 5.3E-11 86.8 13.4 114 950-1078 3-116 (119)
106 PLN03081 pentatricopeptide (PP 98.4 1.2E-05 2.6E-10 107.8 22.7 192 909-1135 292-487 (697)
107 KOG2376 Signal recognition par 98.4 0.00011 2.4E-09 91.4 28.6 158 869-1041 83-270 (652)
108 PRK14720 transcript cleavage f 98.4 1.4E-05 3E-10 106.4 21.9 222 861-1142 27-255 (906)
109 COG4783 Putative Zn-dependent 98.4 0.00015 3.2E-09 89.3 28.9 192 836-1061 241-436 (484)
110 PLN02789 farnesyltranstransfer 98.4 1.5E-05 3.2E-10 96.7 20.6 158 873-1062 45-212 (320)
111 TIGR02795 tol_pal_ybgF tol-pal 98.4 4.7E-06 1E-10 84.7 13.9 104 908-1021 3-106 (119)
112 PLN03081 pentatricopeptide (PP 98.4 1.8E-05 3.9E-10 106.1 23.0 180 847-1060 274-453 (697)
113 PLN02789 farnesyltranstransfer 98.4 1.3E-05 2.7E-10 97.3 19.1 186 861-1086 67-266 (320)
114 KOG2376 Signal recognition par 98.4 3.2E-05 6.8E-10 96.1 22.3 195 847-1061 27-252 (652)
115 KOG0553 TPR repeat-containing 98.3 3.5E-06 7.6E-11 98.0 13.0 123 904-1050 78-200 (304)
116 PLN03088 SGT1, suppressor of 98.3 4.3E-06 9.3E-11 103.1 14.5 96 910-1021 5-100 (356)
117 PF09976 TPR_21: Tetratricopep 98.3 2.3E-05 5E-10 84.2 17.8 135 865-1018 11-145 (145)
118 KOG1156 N-terminal acetyltrans 98.3 2.7E-05 5.9E-10 97.5 20.6 166 866-1063 8-173 (700)
119 KOG0495 HAT repeat protein [RN 98.3 3.1E-05 6.7E-10 96.4 20.8 224 871-1140 624-847 (913)
120 COG5010 TadD Flp pilus assembl 98.3 8.4E-06 1.8E-10 93.4 14.9 135 858-1016 93-227 (257)
121 KOG1585 Protein required for f 98.3 0.00034 7.3E-09 79.3 26.0 240 882-1133 10-250 (308)
122 PF12569 NARP1: NMDA receptor- 98.3 0.00014 3E-09 93.3 26.3 178 991-1185 194-391 (517)
123 PF09976 TPR_21: Tetratricopep 98.3 4.3E-05 9.3E-10 82.1 18.6 123 919-1060 23-145 (145)
124 PF12688 TPR_5: Tetratrico pep 98.2 3.1E-05 6.7E-10 80.8 14.4 102 908-1019 2-103 (120)
125 PLN03077 Protein ECB2; Provisi 98.2 0.00033 7E-09 96.3 28.5 222 867-1135 391-650 (857)
126 PRK10153 DNA-binding transcrip 98.1 2.8E-05 6E-10 100.0 15.9 139 860-1021 334-483 (517)
127 cd00189 TPR Tetratricopeptide 98.1 1.5E-05 3.2E-10 74.7 10.1 96 867-978 2-97 (100)
128 cd00189 TPR Tetratricopeptide 98.1 1.5E-05 3.2E-10 74.8 9.9 96 909-1020 2-97 (100)
129 PF12688 TPR_5: Tetratrico pep 98.1 4.8E-05 1E-09 79.4 14.3 102 866-977 2-103 (120)
130 PLN03077 Protein ECB2; Provisi 98.1 0.00024 5.3E-09 97.5 25.3 291 846-1186 438-768 (857)
131 PF13525 YfiO: Outer membrane 98.1 0.0002 4.2E-09 81.6 20.4 143 906-1063 4-171 (203)
132 KOG3617 WD40 and TPR repeat-co 98.1 0.00034 7.4E-09 88.7 22.8 236 871-1146 806-1076(1416)
133 KOG1585 Protein required for f 98.1 0.0005 1.1E-08 78.0 21.7 189 865-1062 31-219 (308)
134 KOG0543 FKBP-type peptidyl-pro 98.0 4.4E-05 9.5E-10 92.3 14.0 138 865-1018 208-353 (397)
135 PRK14720 transcript cleavage f 98.0 3.9E-05 8.4E-10 102.3 14.8 133 899-1077 23-155 (906)
136 KOG1128 Uncharacterized conser 98.0 5.7E-05 1.2E-09 95.8 15.3 138 953-1149 489-626 (777)
137 KOG4162 Predicted calmodulin-b 98.0 0.0017 3.6E-08 83.5 27.5 247 863-1146 321-583 (799)
138 KOG1128 Uncharacterized conser 98.0 2.9E-05 6.3E-10 98.4 12.1 169 873-1072 458-626 (777)
139 PF13414 TPR_11: TPR repeat; P 98.0 2.3E-05 5E-10 72.8 8.5 65 906-978 2-67 (69)
140 KOG0495 HAT repeat protein [RN 98.0 0.00018 3.8E-09 90.0 18.2 209 849-1089 635-865 (913)
141 PF13414 TPR_11: TPR repeat; P 98.0 2.3E-05 5E-10 72.9 8.0 65 864-936 2-67 (69)
142 PRK11906 transcriptional regul 98.0 0.00031 6.8E-09 86.9 19.7 185 867-1085 257-453 (458)
143 PRK10803 tol-pal system protei 97.9 0.00011 2.4E-09 86.9 14.7 117 950-1081 143-260 (263)
144 PRK10803 tol-pal system protei 97.9 8E-05 1.7E-09 88.0 13.4 106 864-979 141-247 (263)
145 KOG1156 N-terminal acetyltrans 97.9 0.00048 1E-08 86.8 20.3 136 862-1021 38-173 (700)
146 KOG3060 Uncharacterized conser 97.9 0.00086 1.9E-08 76.7 20.5 166 865-1062 52-220 (289)
147 PRK10866 outer membrane biogen 97.9 0.00077 1.7E-08 79.0 21.0 142 906-1062 31-204 (243)
148 PF12895 Apc3: Anaphase-promot 97.9 4.1E-05 8.9E-10 74.4 8.5 84 877-975 1-84 (84)
149 KOG0543 FKBP-type peptidyl-pro 97.9 0.00017 3.8E-09 87.2 15.0 102 953-1062 212-320 (397)
150 KOG4340 Uncharacterized conser 97.9 0.00016 3.5E-09 83.3 13.8 163 876-1062 21-207 (459)
151 PF12569 NARP1: NMDA receptor- 97.9 0.0037 8E-08 80.5 27.6 145 906-1070 193-342 (517)
152 KOG3617 WD40 and TPR repeat-co 97.9 0.0057 1.2E-07 78.2 27.9 195 864-1061 911-1173(1416)
153 PF12895 Apc3: Anaphase-promot 97.8 0.00012 2.7E-09 71.0 10.5 84 919-1017 1-84 (84)
154 KOG1127 TPR repeat-containing 97.8 0.00054 1.2E-08 89.2 18.4 153 879-1061 472-624 (1238)
155 PRK10153 DNA-binding transcrip 97.7 0.00049 1.1E-08 88.7 16.6 145 908-1081 340-495 (517)
156 KOG4555 TPR repeat-containing 97.7 0.00083 1.8E-08 69.6 14.5 100 867-978 45-144 (175)
157 PF13432 TPR_16: Tetratricopep 97.7 0.00014 3E-09 66.9 8.2 60 869-936 1-60 (65)
158 COG2909 MalT ATP-dependent tra 97.6 0.043 9.4E-07 72.3 31.8 188 866-1063 416-607 (894)
159 KOG1127 TPR repeat-containing 97.6 0.0023 4.9E-08 83.7 20.2 141 913-1070 568-708 (1238)
160 KOG4555 TPR repeat-containing 97.6 0.0019 4E-08 67.1 15.7 124 909-1044 45-172 (175)
161 PF04733 Coatomer_E: Coatomer 97.6 0.00049 1.1E-08 82.7 13.5 177 867-1085 104-283 (290)
162 COG3071 HemY Uncharacterized e 97.6 0.0054 1.2E-07 74.2 21.9 184 864-1064 152-392 (400)
163 COG4783 Putative Zn-dependent 97.6 0.0013 2.8E-08 81.2 16.5 166 875-1087 304-475 (484)
164 KOG1586 Protein required for f 97.6 0.0094 2E-07 67.7 21.4 154 878-1061 27-182 (288)
165 PF13374 TPR_10: Tetratricopep 97.6 0.00011 2.5E-09 61.1 4.9 42 1032-1073 1-42 (42)
166 PF13432 TPR_16: Tetratricopep 97.5 0.00024 5.3E-09 65.3 7.5 60 911-978 1-60 (65)
167 PF13374 TPR_10: Tetratricopep 97.5 0.00013 2.8E-09 60.7 5.0 42 906-947 1-42 (42)
168 COG0457 NrfG FOG: TPR repeat [ 97.5 0.008 1.7E-07 64.5 20.2 175 861-1063 91-266 (291)
169 COG3071 HemY Uncharacterized e 97.5 0.078 1.7E-06 64.6 29.3 172 865-1062 84-292 (400)
170 KOG4340 Uncharacterized conser 97.5 0.0045 9.7E-08 71.8 17.9 175 866-1056 45-264 (459)
171 KOG2300 Uncharacterized conser 97.5 0.005 1.1E-07 75.5 19.1 202 868-1086 326-536 (629)
172 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0014 3E-08 81.6 14.7 116 873-1015 177-292 (395)
173 COG4105 ComL DNA uptake lipopr 97.4 0.014 3E-07 67.8 21.6 173 864-1056 33-227 (254)
174 COG1729 Uncharacterized protei 97.4 0.00084 1.8E-08 78.2 11.7 106 864-979 140-245 (262)
175 KOG3060 Uncharacterized conser 97.4 0.0092 2E-07 68.6 19.4 131 868-1022 89-222 (289)
176 KOG2300 Uncharacterized conser 97.4 0.031 6.6E-07 68.9 24.8 178 873-1063 283-475 (629)
177 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.00053 1.1E-08 84.9 10.1 72 944-1020 70-141 (453)
178 COG0457 NrfG FOG: TPR repeat [ 97.4 0.014 3E-07 62.7 20.0 174 865-1064 59-233 (291)
179 COG4700 Uncharacterized protei 97.4 0.016 3.5E-07 63.7 19.4 180 871-1084 62-241 (251)
180 COG1729 Uncharacterized protei 97.3 0.0011 2.3E-08 77.4 11.1 102 910-1021 144-245 (262)
181 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.00063 1.4E-08 84.2 9.8 72 902-978 70-141 (453)
182 KOG3785 Uncharacterized conser 97.3 0.0051 1.1E-07 72.7 16.1 159 875-1057 32-209 (557)
183 KOG1586 Protein required for f 97.3 0.016 3.4E-07 65.9 19.2 182 866-1057 35-219 (288)
184 KOG4234 TPR repeat-containing 97.3 0.0021 4.5E-08 71.2 11.9 124 950-1092 96-219 (271)
185 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.004 8.7E-08 77.5 16.1 118 913-1057 175-292 (395)
186 COG2909 MalT ATP-dependent tra 97.3 0.15 3.3E-06 67.5 30.4 189 865-1064 458-649 (894)
187 PRK11906 transcriptional regul 97.3 0.0057 1.2E-07 76.1 16.8 150 843-1016 269-432 (458)
188 KOG3785 Uncharacterized conser 97.3 0.0098 2.1E-07 70.4 17.5 136 865-1016 57-210 (557)
189 KOG4234 TPR repeat-containing 97.2 0.0032 7E-08 69.7 12.7 103 865-978 95-197 (271)
190 KOG1070 rRNA processing protei 97.2 0.035 7.5E-07 75.4 24.2 178 859-1062 1452-1629(1710)
191 COG4785 NlpI Lipoprotein NlpI, 97.2 0.0039 8.5E-08 69.8 13.4 172 863-1061 63-265 (297)
192 PF04184 ST7: ST7 protein; In 97.2 0.019 4E-07 71.6 20.1 131 870-1016 173-320 (539)
193 COG4235 Cytochrome c biogenesi 97.2 0.0059 1.3E-07 72.1 15.3 120 854-993 145-267 (287)
194 PRK15331 chaperone protein Sic 97.2 0.0018 3.9E-08 70.6 10.0 99 863-977 35-133 (165)
195 KOG4648 Uncharacterized conser 97.1 0.001 2.3E-08 78.0 8.2 96 867-978 99-194 (536)
196 PF08631 SPO22: Meiosis protei 97.1 0.11 2.4E-06 62.4 25.4 141 875-1020 3-150 (278)
197 KOG2047 mRNA splicing factor [ 97.1 0.17 3.7E-06 64.5 26.9 194 865-1067 248-504 (835)
198 PF10300 DUF3808: Protein of u 97.1 0.021 4.5E-07 73.3 20.1 184 870-1073 193-387 (468)
199 COG4235 Cytochrome c biogenesi 97.1 0.012 2.5E-07 69.7 15.9 120 903-1042 152-274 (287)
200 KOG3616 Selective LIM binding 97.1 0.03 6.4E-07 70.9 19.8 185 853-1065 649-862 (1636)
201 PRK15331 chaperone protein Sic 97.1 0.0031 6.7E-08 68.9 10.2 102 903-1020 33-134 (165)
202 PF13512 TPR_18: Tetratricopep 97.0 0.0069 1.5E-07 64.8 12.6 105 864-978 9-128 (142)
203 KOG2047 mRNA splicing factor [ 97.0 2 4.4E-05 55.4 34.4 193 855-1062 374-579 (835)
204 PF12968 DUF3856: Domain of Un 97.0 0.031 6.8E-07 57.5 15.7 122 905-1027 5-136 (144)
205 PF12968 DUF3856: Domain of Un 96.9 0.034 7.5E-07 57.2 15.5 116 869-985 13-136 (144)
206 PF04733 Coatomer_E: Coatomer 96.9 0.0065 1.4E-07 73.1 12.3 140 865-1033 131-273 (290)
207 KOG4642 Chaperone-dependent E3 96.8 0.0044 9.5E-08 70.5 9.4 104 863-982 8-111 (284)
208 PF13512 TPR_18: Tetratricopep 96.8 0.016 3.5E-07 62.1 12.8 104 907-1020 10-128 (142)
209 KOG3081 Vesicle coat complex C 96.8 0.13 2.8E-06 60.0 20.6 175 867-1080 110-284 (299)
210 PF10345 Cohesin_load: Cohesin 96.7 0.44 9.6E-06 63.4 28.8 190 863-1061 57-253 (608)
211 COG5159 RPN6 26S proteasome re 96.7 0.12 2.6E-06 60.2 19.9 207 869-1080 7-251 (421)
212 PF13371 TPR_9: Tetratricopept 96.7 0.0072 1.6E-07 56.7 8.6 58 913-978 1-58 (73)
213 PF13371 TPR_9: Tetratricopept 96.7 0.0057 1.2E-07 57.3 7.8 57 872-936 2-58 (73)
214 PF14559 TPR_19: Tetratricopep 96.7 0.0032 7E-08 58.2 5.9 54 875-936 1-54 (68)
215 KOG1070 rRNA processing protei 96.7 0.042 9E-07 74.7 17.9 206 903-1139 1454-1663(1710)
216 COG4700 Uncharacterized protei 96.6 0.033 7.2E-07 61.4 13.7 135 866-1022 90-224 (251)
217 KOG4648 Uncharacterized conser 96.6 0.0073 1.6E-07 71.2 9.3 111 953-1084 101-211 (536)
218 PF09986 DUF2225: Uncharacteri 96.6 0.02 4.4E-07 65.9 12.5 100 920-1020 90-194 (214)
219 KOG2796 Uncharacterized conser 96.5 0.031 6.7E-07 64.4 13.3 158 865-1044 177-334 (366)
220 PF14559 TPR_19: Tetratricopep 96.5 0.0064 1.4E-07 56.2 6.6 54 917-978 1-54 (68)
221 PF03704 BTAD: Bacterial trans 96.5 0.078 1.7E-06 56.9 15.9 112 867-986 8-133 (146)
222 PF10300 DUF3808: Protein of u 96.4 0.067 1.5E-06 68.7 17.4 135 878-1031 246-387 (468)
223 COG4785 NlpI Lipoprotein NlpI, 96.4 0.1 2.3E-06 58.9 16.2 205 903-1139 61-266 (297)
224 COG3898 Uncharacterized membra 96.4 0.62 1.3E-05 56.7 23.4 180 869-1082 124-306 (531)
225 PF09986 DUF2225: Uncharacteri 96.3 0.026 5.6E-07 65.1 11.6 103 875-978 87-194 (214)
226 COG4105 ComL DNA uptake lipopr 96.3 0.26 5.6E-06 57.6 19.5 145 906-1062 33-196 (254)
227 PF03704 BTAD: Bacterial trans 96.3 0.091 2E-06 56.4 15.1 111 952-1070 9-133 (146)
228 PF02259 FAT: FAT domain; Int 96.3 0.4 8.7E-06 58.6 22.5 212 868-1092 32-309 (352)
229 KOG1915 Cell cycle control pro 96.2 0.86 1.9E-05 56.7 23.8 234 868-1139 110-351 (677)
230 KOG3081 Vesicle coat complex C 96.2 0.39 8.4E-06 56.2 19.7 138 909-1082 110-251 (299)
231 PF10345 Cohesin_load: Cohesin 96.2 0.88 1.9E-05 60.7 26.2 154 904-1065 56-211 (608)
232 KOG4642 Chaperone-dependent E3 96.1 0.018 4E-07 65.6 8.7 99 952-1066 13-111 (284)
233 KOG3616 Selective LIM binding 96.1 0.25 5.4E-06 63.0 18.9 146 850-1020 750-911 (1636)
234 PF13281 DUF4071: Domain of un 95.9 0.55 1.2E-05 58.2 20.7 154 878-1051 112-277 (374)
235 PF04184 ST7: ST7 protein; In 95.8 0.15 3.3E-06 63.9 15.4 131 912-1058 173-320 (539)
236 COG3118 Thioredoxin domain-con 95.8 0.33 7.1E-06 57.7 17.3 146 822-977 89-264 (304)
237 PF10602 RPN7: 26S proteasome 95.8 0.16 3.4E-06 57.0 14.2 124 930-1062 19-142 (177)
238 PF08631 SPO22: Meiosis protei 95.6 0.98 2.1E-05 54.2 21.3 78 864-942 34-118 (278)
239 KOG2796 Uncharacterized conser 95.6 0.13 2.9E-06 59.5 12.8 139 907-1062 177-315 (366)
240 KOG2471 TPR repeat-containing 95.6 0.043 9.3E-07 67.6 9.1 155 873-1044 214-380 (696)
241 KOG0551 Hsp90 co-chaperone CNS 95.5 0.056 1.2E-06 64.4 9.8 105 863-979 79-183 (390)
242 KOG2041 WD40 repeat protein [G 95.5 2.2 4.8E-05 55.0 23.9 108 865-975 796-936 (1189)
243 KOG0545 Aryl-hydrocarbon recep 95.4 0.12 2.6E-06 59.3 11.3 105 866-978 179-293 (329)
244 KOG2610 Uncharacterized conser 95.4 0.25 5.5E-06 58.8 14.2 164 871-1058 109-272 (491)
245 PF10602 RPN7: 26S proteasome 95.4 0.25 5.4E-06 55.4 13.9 110 904-1020 33-142 (177)
246 COG0790 FOG: TPR repeat, SEL1 95.3 1.3 2.9E-05 53.0 20.9 145 865-1047 73-236 (292)
247 KOG2610 Uncharacterized conser 95.2 0.84 1.8E-05 54.6 17.8 128 914-1061 110-237 (491)
248 COG2976 Uncharacterized protei 95.1 0.74 1.6E-05 51.9 15.9 100 949-1062 89-188 (207)
249 KOG0985 Vesicle coat protein c 95.0 3.5 7.6E-05 55.4 23.9 172 862-1066 1101-1312(1666)
250 KOG2041 WD40 repeat protein [G 95.0 6.5 0.00014 51.1 25.6 188 861-1059 688-936 (1189)
251 KOG2471 TPR repeat-containing 95.0 0.14 3.1E-06 63.3 11.1 139 855-1002 229-380 (696)
252 cd01807 GDX_N ubiquitin-like d 95.0 0.042 9.1E-07 52.5 5.5 70 29-101 1-73 (74)
253 PF11817 Foie-gras_1: Foie gra 95.0 2.9 6.3E-05 49.4 22.0 187 869-1059 14-244 (247)
254 PF12862 Apc5: Anaphase-promot 94.9 0.34 7.4E-06 48.5 12.0 82 959-1042 8-90 (94)
255 PF02259 FAT: FAT domain; Int 94.9 2.4 5.3E-05 51.8 22.0 132 903-1046 142-305 (352)
256 KOG1915 Cell cycle control pro 94.8 8.2 0.00018 48.5 25.2 192 847-1061 156-350 (677)
257 KOG0545 Aryl-hydrocarbon recep 94.8 0.59 1.3E-05 53.9 14.6 105 908-1020 179-293 (329)
258 PF04910 Tcf25: Transcriptiona 94.8 1.1 2.4E-05 55.8 18.8 151 903-1063 36-223 (360)
259 KOG1464 COP9 signalosome, subu 94.7 1.8 3.9E-05 50.5 18.3 208 879-1097 41-260 (440)
260 PF12862 Apc5: Anaphase-promot 94.7 0.34 7.3E-06 48.6 11.4 82 917-1000 8-90 (94)
261 KOG3965 Uncharacterized conser 94.7 0.054 1.2E-06 57.4 5.7 55 226-280 60-128 (160)
262 KOG1463 26S proteasome regulat 94.7 1.6 3.5E-05 52.6 18.3 205 866-1081 49-255 (411)
263 cd01802 AN1_N ubiquitin-like d 94.7 0.069 1.5E-06 54.6 6.4 71 26-99 25-98 (103)
264 PF00244 14-3-3: 14-3-3 protei 94.6 10 0.00022 44.7 25.1 187 867-1068 3-204 (236)
265 PTZ00044 ubiquitin; Provisiona 94.6 0.058 1.3E-06 51.6 5.5 68 29-99 1-71 (76)
266 PF13176 TPR_7: Tetratricopept 94.5 0.072 1.6E-06 43.6 5.0 31 909-939 1-31 (36)
267 PF13176 TPR_7: Tetratricopept 94.4 0.083 1.8E-06 43.3 5.0 31 993-1023 1-31 (36)
268 cd01798 parkin_N amino-termina 94.3 0.068 1.5E-06 50.5 5.1 66 31-99 1-69 (70)
269 cd01810 ISG15_repeat2 ISG15 ub 94.3 0.071 1.5E-06 50.9 5.2 66 31-99 1-69 (74)
270 KOG1464 COP9 signalosome, subu 94.2 0.93 2E-05 52.7 14.6 207 865-1081 65-276 (440)
271 cd01794 DC_UbP_C dendritic cel 94.1 0.079 1.7E-06 50.3 5.1 65 31-98 1-68 (70)
272 PF05843 Suf: Suppressor of fo 94.1 0.39 8.4E-06 57.8 12.1 134 909-1063 3-137 (280)
273 KOG0551 Hsp90 co-chaperone CNS 94.0 1 2.2E-05 54.2 14.8 105 905-1021 79-183 (390)
274 PF06552 TOM20_plant: Plant sp 94.0 0.85 1.8E-05 50.9 13.3 91 987-1078 21-120 (186)
275 PF00515 TPR_1: Tetratricopept 93.9 0.11 2.3E-06 41.6 4.8 30 907-936 1-30 (34)
276 cd01806 Nedd8 Nebb8-like ubiq 93.8 0.12 2.6E-06 49.1 5.7 68 29-99 1-71 (76)
277 KOG1550 Extracellular protein 93.6 1.5 3.2E-05 57.9 17.2 150 880-1062 227-393 (552)
278 PF13281 DUF4071: Domain of un 93.6 6.6 0.00014 49.0 21.6 175 868-1062 144-334 (374)
279 COG0790 FOG: TPR repeat, SEL1 93.6 2.2 4.8E-05 51.1 17.4 152 873-1061 49-219 (292)
280 cd01804 midnolin_N Ubiquitin-l 93.6 0.16 3.5E-06 49.2 6.2 68 29-100 2-72 (78)
281 PF08626 TRAPPC9-Trs120: Trans 93.5 2.7 5.8E-05 60.3 20.6 156 863-1022 240-476 (1185)
282 COG2976 Uncharacterized protei 93.3 1.6 3.5E-05 49.3 14.1 98 909-1020 91-188 (207)
283 PF00515 TPR_1: Tetratricopept 93.3 0.16 3.5E-06 40.5 4.8 31 991-1021 1-31 (34)
284 PF06552 TOM20_plant: Plant sp 93.3 0.43 9.3E-06 53.2 9.6 92 881-981 7-105 (186)
285 cd01792 ISG15_repeat1 ISG15 ub 93.2 0.18 4E-06 48.9 5.9 71 29-100 3-76 (80)
286 cd01808 hPLIC_N Ubiquitin-like 93.0 0.18 3.9E-06 47.8 5.5 66 29-98 1-69 (71)
287 PF13428 TPR_14: Tetratricopep 93.0 0.14 3E-06 43.8 4.2 42 866-915 2-43 (44)
288 cd01809 Scythe_N Ubiquitin-lik 93.0 0.18 3.8E-06 47.5 5.4 68 29-99 1-71 (72)
289 PF13428 TPR_14: Tetratricopep 93.0 0.21 4.6E-06 42.7 5.4 42 908-957 2-43 (44)
290 PF07719 TPR_2: Tetratricopept 92.9 0.19 4.2E-06 39.8 4.8 31 907-937 1-31 (34)
291 COG3898 Uncharacterized membra 92.7 29 0.00062 43.1 24.0 237 865-1142 84-326 (531)
292 cd01805 RAD23_N Ubiquitin-like 92.6 0.24 5.3E-06 47.4 5.8 68 29-98 1-72 (77)
293 PF13431 TPR_17: Tetratricopep 92.6 0.11 2.4E-06 42.2 2.9 34 929-970 1-34 (34)
294 PF05843 Suf: Suppressor of fo 92.5 1.1 2.5E-05 53.8 12.8 133 868-1021 4-137 (280)
295 KOG4322 Anaphase-promoting com 92.4 3.4 7.5E-05 51.3 16.3 190 865-1061 273-470 (482)
296 PF07719 TPR_2: Tetratricopept 92.3 0.26 5.6E-06 39.0 4.8 31 1033-1063 1-31 (34)
297 COG3118 Thioredoxin domain-con 92.3 2.4 5.3E-05 50.7 14.5 101 912-1020 139-265 (304)
298 cd01797 NIRF_N amino-terminal 92.1 0.24 5.3E-06 48.0 5.2 68 29-99 1-73 (78)
299 KOG0376 Serine-threonine phosp 92.1 0.11 2.4E-06 64.8 3.5 98 865-978 4-101 (476)
300 cd01793 Fubi Fubi ubiquitin-li 92.1 0.29 6.4E-06 46.8 5.6 66 29-99 1-69 (74)
301 PF04910 Tcf25: Transcriptiona 92.0 6.7 0.00014 49.1 18.8 151 861-1021 36-223 (360)
302 PF13431 TPR_17: Tetratricopep 91.9 0.12 2.7E-06 41.9 2.5 34 887-928 1-34 (34)
303 cd01803 Ubiquitin Ubiquitin. U 91.8 0.31 6.8E-06 46.3 5.6 68 29-99 1-71 (76)
304 PF13181 TPR_8: Tetratricopept 91.8 0.31 6.8E-06 38.7 4.7 31 907-937 1-31 (34)
305 PF00240 ubiquitin: Ubiquitin 91.8 0.27 5.8E-06 46.0 5.0 64 34-100 1-67 (69)
306 KOG0985 Vesicle coat protein c 91.6 9.4 0.0002 51.7 19.5 122 907-1061 1104-1248(1666)
307 KOG1550 Extracellular protein 91.5 4.1 8.8E-05 53.9 17.1 147 850-1020 230-393 (552)
308 PF12739 TRAPPC-Trs85: ER-Golg 91.4 5.3 0.00011 50.9 17.5 177 867-1064 210-401 (414)
309 KOG1308 Hsp70-interacting prot 91.4 0.12 2.6E-06 62.0 2.6 95 868-978 117-211 (377)
310 KOG3783 Uncharacterized conser 91.3 15 0.00032 47.3 20.5 185 863-1062 265-520 (546)
311 PF13181 TPR_8: Tetratricopept 91.2 0.4 8.7E-06 38.1 4.7 31 1033-1063 1-31 (34)
312 COG5159 RPN6 26S proteasome re 91.1 13 0.00028 44.2 18.3 174 845-1022 16-237 (421)
313 KOG4814 Uncharacterized conser 90.7 8.1 0.00018 50.1 17.4 106 950-1065 355-460 (872)
314 KOG2053 Mitochondrial inherita 90.7 37 0.00079 46.2 23.8 168 868-1059 46-216 (932)
315 KOG2561 Adaptor protein NUB1, 90.5 7.7 0.00017 48.3 16.5 145 910-1058 166-340 (568)
316 KOG0508 Ankyrin repeat protein 90.5 0.45 9.8E-06 58.9 6.3 135 865-1002 245-390 (615)
317 cd01812 BAG1_N Ubiquitin-like 90.4 0.47 1E-05 44.6 5.2 68 29-100 1-71 (71)
318 KOG4814 Uncharacterized conser 90.2 21 0.00047 46.5 20.4 105 866-980 355-459 (872)
319 KOG4563 Cell cycle-regulated h 90.2 1.5 3.3E-05 53.2 10.2 62 864-925 40-101 (400)
320 cd01763 Sumo Small ubiquitin-r 90.0 1 2.2E-05 44.6 7.4 70 26-98 9-81 (87)
321 KOG4322 Anaphase-promoting com 89.9 5.5 0.00012 49.6 14.7 180 899-1085 265-449 (482)
322 KOG1914 mRNA cleavage and poly 89.8 44 0.00095 43.2 22.4 236 907-1165 286-527 (656)
323 PF08424 NRDE-2: NRDE-2, neces 89.6 30 0.00064 42.7 21.2 163 903-1073 15-192 (321)
324 KOG4507 Uncharacterized conser 89.4 2.6 5.7E-05 53.7 11.7 99 908-1020 213-312 (886)
325 PF08626 TRAPPC9-Trs120: Trans 89.3 11 0.00024 54.3 19.6 158 906-1067 241-479 (1185)
326 cd01796 DDI1_N DNA damage indu 89.2 0.55 1.2E-05 44.7 4.6 64 31-97 1-69 (71)
327 PF12739 TRAPPC-Trs85: ER-Golg 89.2 16 0.00035 46.6 19.2 179 951-1142 210-402 (414)
328 KOG0508 Ankyrin repeat protein 89.2 0.46 1E-05 58.8 5.0 134 908-1045 246-391 (615)
329 KOG4014 Uncharacterized conser 89.0 3.8 8.2E-05 45.7 11.2 156 879-1066 41-237 (248)
330 smart00101 14_3_3 14-3-3 homol 88.6 60 0.0013 38.6 24.0 187 868-1068 4-206 (244)
331 KOG4507 Uncharacterized conser 88.5 0.55 1.2E-05 59.3 5.1 112 951-1082 609-720 (886)
332 PF11817 Foie-gras_1: Foie gra 88.3 23 0.00049 42.0 18.3 152 911-1064 14-209 (247)
333 KOG2581 26S proteasome regulat 88.3 47 0.001 41.6 20.6 138 917-1062 136-276 (493)
334 cd01790 Herp_N Homocysteine-re 87.9 1.2 2.7E-05 43.4 6.1 70 28-99 1-78 (79)
335 KOG4014 Uncharacterized conser 87.9 6.3 0.00014 44.1 12.0 149 847-1025 50-238 (248)
336 PF08424 NRDE-2: NRDE-2, neces 87.9 26 0.00056 43.2 19.1 128 881-1021 47-184 (321)
337 KOG2053 Mitochondrial inherita 87.3 25 0.00055 47.6 19.0 109 876-1009 20-128 (932)
338 PF00244 14-3-3: 14-3-3 protei 87.3 39 0.00085 39.9 19.3 159 910-1084 4-177 (236)
339 PF11207 DUF2989: Protein of u 87.2 5.6 0.00012 45.5 11.6 76 933-1013 125-200 (203)
340 KOG1914 mRNA cleavage and poly 86.9 13 0.00027 47.8 15.4 173 868-1062 289-464 (656)
341 KOG0376 Serine-threonine phosp 86.5 1.3 2.7E-05 55.8 6.6 111 953-1084 8-118 (476)
342 KOG0686 COP9 signalosome, subu 86.5 6.5 0.00014 48.7 12.3 108 947-1059 148-255 (466)
343 PF10579 Rapsyn_N: Rapsyn N-te 86.4 6.1 0.00013 38.6 9.6 71 991-1066 6-76 (80)
344 cd01791 Ubl5 UBL5 ubiquitin-li 86.3 1.7 3.7E-05 41.8 6.0 68 28-98 1-71 (73)
345 PF10952 DUF2753: Protein of u 86.2 7.6 0.00016 40.9 10.8 75 910-984 4-85 (140)
346 PF10579 Rapsyn_N: Rapsyn N-te 86.0 5.7 0.00012 38.8 9.2 69 910-983 9-77 (80)
347 KOG0890 Protein kinase of the 85.8 7.8 0.00017 56.9 14.2 112 861-982 1666-1788(2382)
348 KOG2581 26S proteasome regulat 85.6 1.1E+02 0.0024 38.5 23.6 142 873-1021 134-277 (493)
349 smart00213 UBQ Ubiquitin homol 85.5 0.98 2.1E-05 41.1 3.9 57 29-89 1-57 (64)
350 PF04781 DUF627: Protein of un 85.1 3.9 8.5E-05 42.4 8.3 102 871-978 2-107 (111)
351 PF11207 DUF2989: Protein of u 84.5 9.4 0.0002 43.7 11.7 72 978-1054 128-199 (203)
352 cd01770 p47_UBX p47-like ubiqu 84.1 3.5 7.6E-05 40.2 7.1 57 28-84 4-60 (79)
353 PF04190 DUF410: Protein of un 84.0 40 0.00086 40.4 17.4 156 955-1142 16-173 (260)
354 PF00789 UBX: UBX domain; Int 83.9 3 6.5E-05 40.5 6.7 65 26-90 4-70 (82)
355 PF09670 Cas_Cas02710: CRISPR- 83.9 25 0.00054 44.4 16.4 139 867-1023 133-273 (379)
356 KOG1308 Hsp70-interacting prot 83.8 0.38 8.2E-06 57.9 0.5 91 914-1020 121-211 (377)
357 KOG1463 26S proteasome regulat 83.5 25 0.00054 43.0 15.0 194 870-1081 133-327 (411)
358 TIGR00601 rad23 UV excision re 83.4 1.7 3.7E-05 54.4 5.9 67 29-97 1-72 (378)
359 KOG1538 Uncharacterized conser 83.4 42 0.0009 43.9 17.5 124 912-1058 637-772 (1081)
360 KOG2561 Adaptor protein NUB1, 83.3 13 0.00027 46.5 12.8 117 865-982 163-300 (568)
361 PF10516 SHNi-TPR: SHNi-TPR; 82.9 2.4 5.3E-05 35.6 4.7 35 908-942 2-36 (38)
362 cd01767 UBX UBX (ubiquitin reg 82.8 3.9 8.6E-05 39.4 7.0 69 28-98 2-75 (77)
363 PF10516 SHNi-TPR: SHNi-TPR; 82.6 2.5 5.5E-05 35.5 4.7 37 1034-1070 2-38 (38)
364 KOG0687 26S proteasome regulat 81.6 1.2E+02 0.0025 37.4 19.4 131 883-1022 82-212 (393)
365 PF04190 DUF410: Protein of un 81.4 1.3E+02 0.0028 36.1 21.6 204 866-1084 11-237 (260)
366 PF07079 DUF1347: Protein of u 81.4 1.7E+02 0.0037 37.5 26.3 135 863-1016 377-520 (549)
367 PF11976 Rad60-SLD: Ubiquitin- 81.4 1.8 3.9E-05 40.9 3.9 68 29-98 1-71 (72)
368 PF10952 DUF2753: Protein of u 81.3 20 0.00043 37.9 11.4 99 994-1093 4-111 (140)
369 KOG0010 Ubiquitin-like protein 80.8 2.9 6.4E-05 52.8 6.5 70 27-100 14-86 (493)
370 PF13174 TPR_6: Tetratricopept 80.2 2.4 5.1E-05 33.1 3.7 28 909-936 2-29 (33)
371 KOG2422 Uncharacterized conser 80.2 78 0.0017 41.4 18.3 172 881-1063 254-449 (665)
372 PF15015 NYD-SP12_N: Spermatog 80.0 18 0.0004 45.0 12.5 107 871-985 182-298 (569)
373 KOG0890 Protein kinase of the 79.4 22 0.00047 52.7 14.7 110 903-1022 1666-1786(2382)
374 PF13174 TPR_6: Tetratricopept 79.2 2.7 5.9E-05 32.8 3.7 28 951-978 2-29 (33)
375 PRK14707 hypothetical protein; 78.8 2.3E+02 0.005 42.6 23.5 180 869-1052 961-1144(2710)
376 KOG1920 IkappaB kinase complex 78.7 94 0.002 43.8 19.5 59 1002-1060 919-979 (1265)
377 smart00028 TPR Tetratricopepti 78.1 2.9 6.3E-05 30.8 3.5 29 908-936 2-30 (34)
378 cd09239 BRO1_HD-PTP_like Prote 77.7 1E+02 0.0022 38.8 18.6 36 1030-1065 249-284 (361)
379 PF10373 EST1_DNA_bind: Est1 D 77.3 24 0.00053 41.7 12.8 62 884-961 1-62 (278)
380 PF09670 Cas_Cas02710: CRISPR- 77.1 62 0.0013 40.9 16.7 138 910-1065 134-273 (379)
381 PF04053 Coatomer_WDAD: Coatom 76.7 41 0.00089 43.4 15.1 93 868-1008 298-390 (443)
382 smart00028 TPR Tetratricopepti 76.6 3.4 7.4E-05 30.4 3.6 29 950-978 2-30 (34)
383 smart00166 UBX Domain present 76.4 8.4 0.00018 37.5 7.0 56 28-84 4-59 (80)
384 COG3629 DnrI DNA-binding trans 75.9 62 0.0013 39.2 15.3 154 911-1072 44-226 (280)
385 KOG0687 26S proteasome regulat 75.7 50 0.0011 40.3 14.1 129 925-1063 82-211 (393)
386 COG4649 Uncharacterized protei 75.6 53 0.0012 36.9 13.2 147 873-1061 47-195 (221)
387 PF04781 DUF627: Protein of un 75.4 42 0.0009 35.1 11.8 102 955-1062 2-107 (111)
388 KOG3807 Predicted membrane pro 75.1 2.1E+02 0.0046 35.1 19.0 115 912-1061 189-303 (556)
389 KOG2114 Vacuolar assembly/sort 74.6 40 0.00087 45.5 14.1 55 875-937 344-398 (933)
390 PF09613 HrpB1_HrpK: Bacterial 74.3 21 0.00046 39.6 10.0 87 864-966 9-95 (160)
391 PRK10941 hypothetical protein; 74.1 20 0.00043 43.1 10.7 82 948-1042 180-261 (269)
392 cd09034 BRO1_Alix_like Protein 73.9 1.4E+02 0.0031 37.0 18.7 37 1030-1066 248-284 (345)
393 cd09240 BRO1_Alix Protein-inte 73.8 1.2E+02 0.0026 37.9 17.8 36 1031-1066 253-288 (346)
394 KOG1920 IkappaB kinase complex 73.8 1.1E+02 0.0025 43.0 18.3 101 960-1061 919-1027(1265)
395 PF14853 Fis1_TPR_C: Fis1 C-te 73.1 12 0.00026 33.9 6.5 29 908-936 2-30 (53)
396 KOG0686 COP9 signalosome, subu 73.0 16 0.00034 45.6 9.4 107 864-975 149-255 (466)
397 KOG3024 Uncharacterized conser 72.9 2.1E+02 0.0046 34.7 18.1 125 907-1057 26-151 (312)
398 COG4649 Uncharacterized protei 72.7 1.2E+02 0.0027 34.2 15.1 129 872-1019 65-195 (221)
399 PF07145 PAM2: Ataxin-2 C-term 72.7 1.9 4.1E-05 30.3 1.0 14 1656-1669 4-17 (18)
400 COG3947 Response regulator con 72.5 35 0.00076 41.0 11.7 77 867-951 281-357 (361)
401 KOG1538 Uncharacterized conser 72.3 1.6E+02 0.0035 38.9 18.0 45 1034-1090 805-849 (1081)
402 cd09246 BRO1_Alix_like_1 Prote 72.1 2.7E+02 0.0058 35.0 20.5 35 1030-1064 244-278 (353)
403 COG5187 RPN7 26S proteasome re 70.9 76 0.0016 38.2 13.9 131 924-1063 92-222 (412)
404 cd01774 Faf1_like2_UBX Faf1 ik 70.5 16 0.00034 36.4 7.2 46 26-73 2-47 (85)
405 PF05053 Menin: Menin; InterP 70.2 37 0.0008 44.1 12.1 71 907-980 277-349 (618)
406 PRK13184 pknD serine/threonine 70.1 23 0.0005 49.4 11.2 82 949-1037 512-593 (932)
407 PF10255 Paf67: RNA polymerase 70.0 25 0.00054 44.6 10.6 74 909-982 124-197 (404)
408 cd01800 SF3a120_C Ubiquitin-li 69.8 5.9 0.00013 38.1 4.2 58 39-99 8-68 (76)
409 PF14561 TPR_20: Tetratricopep 69.7 35 0.00075 34.2 9.6 57 945-1001 18-89 (90)
410 KOG2908 26S proteasome regulat 69.5 2.5E+02 0.0054 34.9 18.0 97 959-1061 85-182 (380)
411 PF15015 NYD-SP12_N: Spermatog 69.5 50 0.0011 41.5 12.5 100 956-1063 183-292 (569)
412 PRK14707 hypothetical protein; 69.2 1.1E+02 0.0024 45.5 17.0 193 870-1064 1004-1198(2710)
413 PF14561 TPR_20: Tetratricopep 69.2 28 0.0006 34.9 8.8 80 854-960 11-90 (90)
414 PF10373 EST1_DNA_bind: Est1 D 68.9 28 0.0006 41.3 10.5 62 926-1003 1-62 (278)
415 TIGR02710 CRISPR-associated pr 68.8 77 0.0017 40.0 14.3 111 868-981 133-278 (380)
416 KOG3807 Predicted membrane pro 68.3 2.3E+02 0.0051 34.7 17.2 98 869-976 188-302 (556)
417 cd01769 UBL Ubiquitin-like dom 67.8 9.8 0.00021 35.0 5.1 64 33-99 2-68 (69)
418 PRK10941 hypothetical protein; 67.5 39 0.00084 40.7 11.2 79 906-997 180-258 (269)
419 PF10255 Paf67: RNA polymerase 67.3 36 0.00077 43.2 11.2 75 993-1067 124-198 (404)
420 PF14853 Fis1_TPR_C: Fis1 C-te 67.2 29 0.00062 31.5 7.6 42 1035-1081 3-44 (53)
421 cd01772 SAKS1_UBX SAKS1-like U 66.9 19 0.0004 35.2 6.9 53 28-82 4-56 (79)
422 PRK13184 pknD serine/threonine 66.5 38 0.00082 47.3 12.2 111 873-995 483-593 (932)
423 PRK09169 hypothetical protein; 66.1 4.1E+02 0.0089 40.6 22.0 13 787-799 496-508 (2316)
424 COG5180 PBP1 Protein interacti 66.1 11 0.00023 47.1 6.0 24 1663-1687 548-571 (654)
425 COG3014 Uncharacterized protei 66.0 3.2E+02 0.0069 33.9 17.8 28 953-980 62-89 (449)
426 KOG2422 Uncharacterized conser 65.9 1.2E+02 0.0025 39.9 15.0 99 922-1020 253-371 (665)
427 KOG4563 Cell cycle-regulated h 65.9 16 0.00034 45.0 7.4 66 991-1056 41-106 (400)
428 PF14858 DUF4486: Domain of un 65.7 1.3E+02 0.0028 39.4 15.7 72 994-1065 154-229 (542)
429 cd01813 UBP_N UBP ubiquitin pr 65.7 11 0.00024 36.3 5.0 67 30-98 2-72 (74)
430 cd09243 BRO1_Brox_like Protein 65.7 1.4E+02 0.0029 37.6 15.7 33 1031-1063 246-278 (353)
431 KOG1258 mRNA processing protei 65.5 3.1E+02 0.0067 36.4 18.9 176 863-1063 295-471 (577)
432 KOG3824 Huntingtin interacting 65.5 12 0.00025 44.9 6.0 65 864-936 115-179 (472)
433 PF09613 HrpB1_HrpK: Bacterial 65.5 54 0.0012 36.4 10.8 89 904-1008 7-95 (160)
434 cd09241 BRO1_ScRim20-like Prot 64.2 1.3E+02 0.0028 37.7 15.4 35 1031-1065 235-269 (355)
435 KOG1310 WD40 repeat protein [G 64.2 19 0.00041 46.0 7.7 92 868-975 377-471 (758)
436 PF05053 Menin: Menin; InterP 63.3 75 0.0016 41.5 12.8 71 949-1022 277-349 (618)
437 cd09244 BRO1_Rhophilin Protein 62.9 1.2E+02 0.0026 38.1 14.4 17 923-939 131-147 (350)
438 cd09247 BRO1_Alix_like_2 Prote 62.8 3.9E+02 0.0085 33.4 20.1 38 1031-1068 251-288 (346)
439 PF07721 TPR_4: Tetratricopept 62.0 8.4 0.00018 29.3 2.8 25 908-932 2-26 (26)
440 KOG2460 Signal recognition par 61.4 1.7E+02 0.0037 38.0 15.2 34 1035-1068 424-457 (593)
441 KOG4521 Nuclear pore complex, 61.1 2.4E+02 0.0052 39.9 17.3 181 864-1062 919-1132(1480)
442 KOG3783 Uncharacterized conser 60.6 5.2E+02 0.011 34.1 21.9 133 876-1021 201-333 (546)
443 KOG3364 Membrane protein invol 60.3 63 0.0014 35.0 9.7 80 990-1078 31-111 (149)
444 KOG3364 Membrane protein invol 59.8 33 0.00071 37.1 7.5 69 906-978 31-100 (149)
445 cd02681 MIT_calpain7_1 MIT: do 59.4 84 0.0018 30.7 9.7 60 1033-1092 6-68 (76)
446 smart00101 14_3_3 14-3-3 homol 59.3 3.8E+02 0.0082 32.1 22.6 160 911-1084 5-179 (244)
447 KOG0307 Vesicle coat complex C 59.1 94 0.002 43.3 13.4 46 1560-1609 778-825 (1049)
448 KOG0276 Vesicle coat complex C 59.1 1.6E+02 0.0035 38.7 14.6 48 918-978 648-695 (794)
449 COG3914 Spy Predicted O-linked 58.2 2.2E+02 0.0048 37.7 15.7 112 899-1021 60-172 (620)
450 PF04097 Nic96: Nup93/Nic96; 58.1 3.4E+02 0.0074 36.7 18.6 20 871-890 264-283 (613)
451 COG3947 Response regulator con 58.1 97 0.0021 37.5 11.7 74 908-989 280-353 (361)
452 PF07721 TPR_4: Tetratricopept 58.0 11 0.00023 28.8 2.7 24 1034-1057 2-25 (26)
453 COG3629 DnrI DNA-binding trans 57.9 2.1E+02 0.0045 34.9 14.8 78 905-990 151-228 (280)
454 cd09242 BRO1_ScBro1_like Prote 57.8 2.1E+02 0.0045 35.9 15.5 35 1031-1065 242-276 (348)
455 KOG1029 Endocytic adaptor prot 57.0 21 0.00045 47.2 6.5 45 1564-1611 92-136 (1118)
456 COG3014 Uncharacterized protei 56.8 1.7E+02 0.0036 36.3 13.4 31 1034-1064 214-244 (449)
457 KOG2114 Vacuolar assembly/sort 56.5 1.2E+02 0.0025 41.5 13.2 31 865-895 368-398 (933)
458 PF12309 KBP_C: KIF-1 binding 56.2 3.1E+02 0.0068 34.7 16.7 145 922-1066 139-335 (371)
459 cd09034 BRO1_Alix_like Protein 56.1 1.7E+02 0.0037 36.2 14.5 17 880-896 136-152 (345)
460 PF03097 BRO1: BRO1-like domai 54.1 2.1E+02 0.0045 36.0 14.9 37 1031-1067 237-273 (377)
461 PF04053 Coatomer_WDAD: Coatom 53.6 94 0.002 40.2 11.8 102 874-1017 327-428 (443)
462 cd01815 BMSC_UbP_N Ubiquitin-l 52.6 14 0.00031 35.8 3.3 50 47-98 19-73 (75)
463 KOG1497 COP9 signalosome, subu 51.5 5.6E+02 0.012 31.7 19.7 105 947-1057 101-208 (399)
464 KOG2582 COP9 signalosome, subu 51.3 6E+02 0.013 32.0 18.9 108 909-1020 104-212 (422)
465 cd02682 MIT_AAA_Arch MIT: doma 50.7 1.3E+02 0.0029 29.3 9.4 37 1032-1068 5-41 (75)
466 TIGR02561 HrpB1_HrpK type III 50.4 82 0.0018 34.7 8.9 85 865-965 10-94 (153)
467 KOG3024 Uncharacterized conser 49.8 1.4E+02 0.003 36.1 11.2 132 877-1016 18-152 (312)
468 cd09244 BRO1_Rhophilin Protein 49.6 4.3E+02 0.0093 33.3 16.2 32 865-896 106-146 (350)
469 COG5187 RPN7 26S proteasome re 48.4 5.9E+02 0.013 31.1 22.1 133 881-1022 91-223 (412)
470 KOG0307 Vesicle coat complex C 47.8 2.8E+02 0.006 39.1 15.0 22 1118-1139 609-630 (1049)
471 KOG4422 Uncharacterized conser 47.8 7.3E+02 0.016 31.9 19.5 127 834-983 181-307 (625)
472 PF04212 MIT: MIT (microtubule 47.7 1.5E+02 0.0033 27.9 9.4 45 1033-1077 5-50 (69)
473 KOG3824 Huntingtin interacting 47.7 35 0.00075 41.1 6.0 59 912-978 121-179 (472)
474 KOG2034 Vacuolar sorting prote 47.3 5.7E+02 0.012 35.6 17.4 59 912-981 363-421 (911)
475 PF10858 DUF2659: Protein of u 46.9 4.6E+02 0.0099 29.5 13.6 99 916-1020 102-200 (220)
476 cd02683 MIT_1 MIT: domain cont 46.4 1.7E+02 0.0036 28.7 9.5 59 1034-1092 7-67 (77)
477 KOG0276 Vesicle coat complex C 46.4 1.1E+02 0.0023 40.4 10.2 117 856-1018 631-748 (794)
478 TIGR02710 CRISPR-associated pr 44.6 3.9E+02 0.0084 34.0 14.7 59 912-973 135-195 (380)
479 TIGR02561 HrpB1_HrpK type III 44.5 1.3E+02 0.0028 33.3 9.2 87 948-1050 9-95 (153)
480 cd09245 BRO1_UmRIM23-like Prot 44.2 6.3E+02 0.014 32.6 16.9 32 1032-1063 295-326 (413)
481 cd01771 Faf1_UBX Faf1 UBX doma 43.7 46 0.00099 32.7 5.3 45 27-73 3-47 (80)
482 KOG0546 HSP90 co-chaperone CPR 43.7 47 0.001 41.0 6.5 120 953-1085 226-356 (372)
483 TIGR03504 FimV_Cterm FimV C-te 43.6 52 0.0011 28.8 5.0 26 1036-1061 2-27 (44)
484 cd09248 BRO1_Rhophilin_1 Prote 43.5 6.4E+02 0.014 32.2 16.4 34 905-938 104-146 (384)
485 KOG3161 Predicted E3 ubiquitin 43.5 1.4E+02 0.0031 39.2 10.7 113 1542-1677 452-577 (861)
486 KOG1497 COP9 signalosome, subu 43.3 7.4E+02 0.016 30.8 21.2 72 989-1061 101-172 (399)
487 KOG1310 WD40 repeat protein [G 41.8 86 0.0019 40.5 8.4 80 922-1017 389-471 (758)
488 PRK09169 hypothetical protein; 41.4 7.7E+02 0.017 38.0 18.4 132 915-1046 671-809 (2316)
489 KOG0005 Ubiquitin-like protein 41.1 50 0.0011 30.5 4.6 67 29-98 1-70 (70)
490 COG5290 IkappaB kinase complex 41.1 1.2E+03 0.025 32.4 18.2 49 1029-1078 938-986 (1243)
491 COG5290 IkappaB kinase complex 41.0 1.2E+03 0.025 32.4 19.2 20 404-423 347-366 (1243)
492 PF12931 Sec16_C: Sec23-bindin 40.8 6.3E+02 0.014 30.7 15.6 116 950-1072 117-236 (284)
493 PF10858 DUF2659: Protein of u 40.6 2.6E+02 0.0056 31.4 10.7 106 867-978 95-200 (220)
494 KOG4279 Serine/threonine prote 39.3 71 0.0015 42.5 7.3 112 899-1020 193-316 (1226)
495 KOG2063 Vacuolar assembly/sort 39.2 3.8E+02 0.0082 37.6 14.4 100 961-1061 603-712 (877)
496 KOG0128 RNA-binding protein SA 39.1 1.3E+03 0.027 32.3 20.1 143 869-1020 117-260 (881)
497 cd09240 BRO1_Alix Protein-inte 39.0 3.5E+02 0.0075 33.9 13.3 30 992-1021 256-285 (346)
498 cd02682 MIT_AAA_Arch MIT: doma 38.7 1.6E+02 0.0035 28.8 8.0 36 990-1025 5-40 (75)
499 KOG0119 Splicing factor 1/bran 38.3 2E+02 0.0042 37.1 10.6 30 1603-1632 472-506 (554)
500 cd09246 BRO1_Alix_like_1 Prote 37.9 5.4E+02 0.012 32.3 14.8 16 881-896 136-151 (353)
No 1
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=100.00 E-value=5.1e-121 Score=1167.46 Aligned_cols=992 Identities=23% Similarity=0.285 Sum_probs=801.7
Q ss_pred CCceEEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCccccccc---C-CceEEEecc
Q 000230 25 LPTVTEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSL---K-PCHLTVEEE 100 (1822)
Q Consensus 25 ~~~~~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~l---k-~~~L~lVee 100 (1822)
.....+|+|..|....+.+++.+++.||||||+|++++.|||+|||+|. +++..|++|.++..| + +|+|.||.+
T Consensus 29 ~~~~~~~~i~p~~~~~~~~~l~~~~~v~~~~q~l~~~~~t~~~tc~~L~--~~~~~~d~~~~~~~i~~~~~~~~l~~v~~ 106 (1236)
T KOG1839|consen 29 GDAKSDINIQPSTGGLLSFELSSFSKVQDVRQVLLDRPLTCYITCLSLL--LDESKLDYFHIKKKISSGKPGCVLASVLG 106 (1236)
T ss_pred ccccccccccCCCCCceEEEecCcchhhhHHHHHhcccccCceeEEEEE--ecccccccccceeeecCCCcceEEEEecc
Confidence 3466778888888889999999999999999999999999999999996 688999999998875 2 599999999
Q ss_pred CCCHHHHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccccCCCCcccc
Q 000230 101 DYSEEQAVAHIRRLLDIVACTNSFGASPKPPGRTSAGSNIESEPTSPNGGDSKPNKAGENRAGVCVGHVAKSGKDTSEIT 180 (1822)
Q Consensus 101 pYte~~Ar~Hvrrvrdl~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1822)
|||+|+||.||++|||||... .|. +......+...+.......+.++.+ . ......+|.+|.++.
T Consensus 107 pY~~re~~~Hv~~vrdlL~~~-~~~--sa~~~~~~a~~~~~~~~~i~~~~~~----~--------t~~~p~d~~~~~~~l 171 (1236)
T KOG1839|consen 107 PYTPREARLHVHSVRDLLSSS-DFA--SAYSPLMKAFFDHNKLGNIPLGDRK----N--------TWVDPEDCKPPFPDL 171 (1236)
T ss_pred cCChHHHHHHHHHHHHHHhcC-Chh--hhhcchhhhhhhhccccCCCccccc----c--------CCCCccccCCCCCCC
Confidence 999999999999999999422 111 1122222222222222222211111 0 122335688889999
Q ss_pred ccCCCCCCCC------CCcccCcccccccccCCCCchhhhccccccccccCCCCeEEEEEEEeCCccEEEEEeCcccccC
Q 000230 181 EKGDAVSMCP------PPRLGQFYDFFSFSHLTPPLQYIRRSTRPFLEDKTDDDFFQIDVRVCSGKPMTIVASREGFYPA 254 (1822)
Q Consensus 181 ~~~~~~~l~~------~pk~~~~~k~~s~S~~nPPp~~~r~~~~~~~~~~~~Gdl~yl~v~t~egk~~~Ita~~~GFy~~ 254 (1822)
|+.+++.+++ .||..+|+++|+||+|||||++| +++||+|||+|+|+||+.||||||++|||+|
T Consensus 172 p~~~e~~~~~~~~~~~~~~~~~~~~~La~sp~nppp~~~----------~~~g~l~yL~v~t~e~~~~~it~~~~gfyvN 241 (1236)
T KOG1839|consen 172 PGEDERWGGDGGEGRSGPKWAKCFRVLAFSPCNPPPERR----------VLDGDLFYLHVVTLEGSVFHITAIIKGFYVN 241 (1236)
T ss_pred CccccccCCCCCcCCCCcccchHHHHHhcCCCCCCCcce----------eecccEEEEEEEEeeccEEEEEEeeeeEEEe
Confidence 9999988753 36889999999999999999985 4599999999999999999999999999975
Q ss_pred C----------C-CCcccchHHHHHHhhCHHHHHHHHHHHHHHhccCCCcCCCCcccCcccccCCccCCCCCCCCCCCCc
Q 000230 255 G----------K-RPLLFHSLVSLLQQISRPFDAAYKALMKAFTEHNKFGNLPYGFRANTWVVPPVVADNPSIFPHLPVE 323 (1822)
Q Consensus 255 ~----------~-~~~~~HsLv~LL~qiSp~F~~~f~~l~k~~~~~~~f~~~p~~~~~~~Wl~p~~~~~~~~~~~~~~~e 323 (1822)
. . .++++|||++||++|||.|+++|..++|+++++|+|+|++++|+.++|++++..|..|+ ++++
T Consensus 242 ns~~~~fdP~p~~~~~ls~sl~~ll~~~S~kfkk~~~~~~~~~s~~~~~er~~~~~~~~sw~~~~~~~~~d~----~r~~ 317 (1236)
T KOG1839|consen 242 NSQSSKFDPSPSGSGDLSHSLIRLLASLSPKFKKAFQTILKKLSSEELAERVLLKTPDESWIVHPLPHLADA----ARAE 317 (1236)
T ss_pred ccccCCCCCCCCCCccchhhHHHHHHhhChHHHHHHHHHHHHHhhhhHHHhccccCCCccccccCCCchHHH----HhhH
Confidence 2 1 35899999999999999999999999999999999999999999999999998876554 4555
Q ss_pred cccC--CCCCCCCCCCCCCCCcchHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCC
Q 000230 324 DENW--GGSGGGQGRDGKHDNRQWAREFAILAAMPCKTAEERQIRDRKAFLLHSLFVDISLFKAVAAIKTLIESNQHSLN 401 (1822)
Q Consensus 324 d~~~--~~~~~g~g~d~~~~~RDWNeEfQ~l~eLP~~t~~ER~~RdR~ifkl~sdFVdaA~~gA~~VI~g~v~~n~~~in 401 (1822)
+... ..+.+|+ .||||||||++||||+++++||++|+|.++||+.||+++|++|||+||++++ .+||
T Consensus 318 ~A~~~~~~~~~G~-------~rdwNee~Qt~re~~~~~l~dr~~rer~~~Kv~~df~~~a~~Ga~~vi~~ni----~ain 386 (1236)
T KOG1839|consen 318 EALTGYYLEHIGY-------TRDWNEELQTTREMPHKDLPDRGARERNLNKVRGDFVKAATRGALAVISGNI----VAIN 386 (1236)
T ss_pred HHhccceeccCcc-------ccchhhhhhhhhhcCccccchhhhhhhccccchhhhcccccccccccccCcc----ccCC
Confidence 5432 3356666 5999999999999999999999999999999999999999999999998877 7899
Q ss_pred CCCCCcceeEEECCEEEEEeecCCCccccccccCCCCcccCchHHhHHHhhhhcccchhccCCCCCCcccceEEEeecCc
Q 000230 402 DPAASIVHEERVGDLIIKVARDVPDASVKLDCKNDGSQVLGMSQKDLTQRNLLKGITADESTTIHDTSTLGVVIIRHSGY 481 (1822)
Q Consensus 402 p~~~~~~~~~~~~nIff~~a~D~~d~~~~~d~k~~G~~~~g~~~A~~Aa~n~LKGv~a~~~~dv~gL~tlgtvvVDYrGy 481 (1822)
|.++..+|||+|+||||+.++|++++| +..| |+.+|+.|+++||+|++.|+.+|++||+||||++||||||
T Consensus 387 p~e~~~~qm~i~~nIf~s~~~dv~~~y-----~~~g----~dvaa~~a~s~dl~g~r~~n~~d~~~l~~Lgt~~vDy~g~ 457 (1236)
T KOG1839|consen 387 PEEPTILQMFIWNNIFFSEGFDVRGHY-----KLGG----GDVAAYAAPSTDLNGKRLYNTVDVPGLKTLGTTVVDYRGY 457 (1236)
T ss_pred CchHHHHHHHHHhhhheeeeccccccc-----cccc----hhHHhhhhccccccccccccccchhhhcchhheeeeccCc
Confidence 999999999999999999999999997 3334 5559999999999999999999999999999999999999
Q ss_pred EEEEE--E-cc--cccCCCCCCCCCccccccCCCCCcccchhhHHHhhcccCCCCCCcccccc------------ccCCc
Q 000230 482 TAVVK--V-SA--EVNWDGHPIPQDIDIEDQSEGGANALNVNSLRMLLHKSSSPQSSSAFQRS------------QSTDF 544 (1822)
Q Consensus 482 Rvvaq--v-Pg--~~~~~~s~vygsidi~~~~egG~~~~~~~~l~~llhk~~~~~~s~~~~~~------------~~~d~ 544 (1822)
||+|| + || ...+.++++||+++. |++++..+.+..++....... .+.+| .+.++
T Consensus 458 rv~Aq~i~~p~~l~~d~~~~~~~g~~~~------~K~~~~~e~~~~l~~~~s~~l---~i~~h~~i~~~d~~~~eL~~s~ 528 (1236)
T KOG1839|consen 458 RVVAQVIINPGILEGDQSQSVIYGPVDE------GKELLSEEAYQRLLERASKLL---LISPHPVINAKDTVLPELGISF 528 (1236)
T ss_pred eEEEEeecCCcchhcccccceeeccccc------cccccccHHHHHhhccccccc---ccCCccccchhhcccccccccc
Confidence 99999 6 66 555778899999984 788888888877776554432 12222 34568
Q ss_pred chhhhhchhhhHHHHhHHhhccC-----------CC----CCcccccchhhHHHHHHHHHhhhccccccccCcCCCcchh
Q 000230 545 ENLRSARSLVRKVIEDSLLKLQE-----------EP----SKHTRSIRWELGACWVQHLQNQASGKNESKKTEEPKLEPA 609 (1822)
Q Consensus 545 e~~~~~~~~~R~y~~d~~~~l~~-----------e~----~~~~~~LRpELv~~~~~~L~~~~~~~~~~~~~~~~~~~~~ 609 (1822)
+++++.+.|+|+|++|+++..+. +. |...++|||||+.+|++|+........+....+....+..
T Consensus 529 eskgi~g~DgR~yllDL~~t~Pld~~~L~~~~~~~~~~k~pHkl~~lr~Eli~~f~~~~l~~~i~~~e~~~~~~~~ds~~ 608 (1236)
T KOG1839|consen 529 ESKGISGVDGRHYLLDLMHTRPLDLNFLGVEAVEELAEKYPHKLSLLRPELILKFYEHRLLAFIVAVENAAEDYGFDSSN 608 (1236)
T ss_pred ccccccCCCcchhHHHHHhccCCcccccchhhhhhccccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcchhhccCCccc
Confidence 99999999999999999865543 11 2235799999999999997544333222211101111100
Q ss_pred hhccCcccchhhhhhccccccccccccCCCCCCCCCcccccCCCCchhhhhhhchHHHHHHHHH-------hhcHHHHhh
Q 000230 610 VKGLGKQGALLKDIKKKTDGRINKTEQGKQVPADNNLDMNKKSDATDQKELEKRDEEMEELWKK-------LISESAYLR 682 (1822)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ee~~~~~~~-------~l~~~a~~r 682 (1822)
.++.........-.+...+... ...+.......|+. +....+..+. -++++.|..
T Consensus 609 ~~~~~d~~~~~~v~~l~~~is~----d~~eS~~~~~~dav--------------~~~~~al~k~~~~~~~~~fnp~~f~s 670 (1236)
T KOG1839|consen 609 PFKKSDAIGLVPVHKLVNCISA----DGRESSKLSLDDAV--------------KYATKALVKLVAVCGPYGFNPAGFYS 670 (1236)
T ss_pred cccccchhhHHHHHHHHHhhcc----ccccccccchHHHH--------------HHHHHHHHHHHhhhcccccCcccccc
Confidence 0000000000000000000000 00000000000000 0000001111 122222222
Q ss_pred ----hcccccccCCCChHHHHHHHHHHHhhcchHHHHHHhccCCCCCCChhhHHHHHHHhhhhhhccchHHHHhhc----
Q 000230 683 ----LKESETGLHLKSPDELIEMAHKYYADTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMCSLGRVVELADK---- 754 (1822)
Q Consensus 683 ----l~~~~~~~~~k~~eq~v~~A~~~L~~~~IP~~V~dl~~l~~~P~Dg~sLte~LH~rGINmRyLGkVa~la~~---- 754 (1822)
+-.++-...+..++|.+.++.+|+....||.+++++.++.+.|+||++|+++||..|+|+||||++++.+..
T Consensus 671 ~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a 750 (1236)
T KOG1839|consen 671 LAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAA 750 (1236)
T ss_pred CceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccc
Confidence 111222222456788999999999999999999999999999999999999999999999999999987632
Q ss_pred ---CchhhhhhHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhh--------------------h-----------
Q 000230 755 ---LPHVQSLCVHEMVVRAYKHILQAVVAAVDNVADLAASIAACLNIL--------------------R----------- 800 (1822)
Q Consensus 755 ---L~~lk~L~~~EmiaRaaKhILr~~l~~v~~~~~ls~~IA~~LN~L--------------------r----------- 800 (1822)
+.++..++..|.++|++||+|+.+++.++. .+++.+++|+|||+ +
T Consensus 751 ~~~~v~l~~l~~~ei~~RslKhvlK~~~r~l~~-~~i~ta~SH~ln~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~ 829 (1236)
T KOG1839|consen 751 TYINVALMELGVGEIALRSLKHVLKDNLRLLGA-DHIQTAASHALNCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGT 829 (1236)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHHHHHHHHHHHHHhhcccccCCCccchHHHHhhhhhhhhhhccCC
Confidence 457888999999999999999999999874 58899999999999 1
Q ss_pred ------------hc----ccccc-----------C--------CCchhhhHHHHHhhhhhhhhccccccccCCCC---Cc
Q 000230 801 ------------FG----WRWNH-----------E--------SCPDLRKFSILRGLSHKVGLELVPRDYDMDSE---SP 842 (1822)
Q Consensus 801 ------------f~----~~~~~-----------~--------~~~~l~k~~LLrel~~k~GLql~~r~Y~f~~a---~p 842 (1822)
+. |.|.. . ......++...+..|++.+|+...+.|.+... ..
T Consensus 830 ~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~ 909 (1236)
T KOG1839|consen 830 PKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSE 909 (1236)
T ss_pred CCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhhccccccCCCCC
Confidence 00 01100 0 00133467888999999999999999999884 78
Q ss_pred CcHhhHHHHhHHHHhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCC
Q 000230 843 FRKSDIISMVPVYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGD 922 (1822)
Q Consensus 843 f~~eDI~~alpvvK~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd 922 (1822)
|..+||.++.|++|+..+...++....+.|+....+|.+.+|.+ .-+++.++.+++|..|++++.+|..|+.++..+|+
T Consensus 910 f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d 988 (1236)
T KOG1839|consen 910 FNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGD 988 (1236)
T ss_pred CCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000230 923 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEE 1002 (1822)
Q Consensus 923 ~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~ 1002 (1822)
+++|+.+.++|..+++|++|.+|+.+...|.+|+.+++..++...|+..+.++++++...+|++||.++.+..|++.+++
T Consensus 989 ~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~ 1068 (1236)
T KOG1839|consen 989 NQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLL 1068 (1236)
T ss_pred hHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000230 1003 GLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLE 1082 (1822)
Q Consensus 1003 ~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~ 1082 (1822)
..++++.|+++++.|+.+...++|+.+..++.+++.+|+++..+++++.|+.+.+.++.||+..+|++|.+++++..|+.
T Consensus 1069 ~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~hsrt~~S~~~~~ 1148 (1236)
T KOG1839|consen 1069 GVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDHSRTKESSEWLN 1148 (1236)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCcccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000230 1083 YFESKALEQQEAAR 1096 (1822)
Q Consensus 1083 ~l~qqAl~~qeAl~ 1096 (1822)
..+++++.+|+++.
T Consensus 1149 ~~T~~~v~~Qk~~~ 1162 (1236)
T KOG1839|consen 1149 LSTAIAVKIQKKLL 1162 (1236)
T ss_pred HhhHHHHHHHHHHH
Confidence 99999999888763
No 2
>PF13236 CLU: Clustered mitochondria
Probab=100.00 E-value=4.2e-43 Score=396.54 Aligned_cols=203 Identities=22% Similarity=0.220 Sum_probs=177.5
Q ss_pred chHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhccCCCCCCCCCCCcceeEEECCEEEEEeec
Q 000230 344 QWAREFAILAAMPCKTAEERQIRDRKAFLLHSLFVDISLFKAVAAIKTLIESNQHSLNDPAASIVHEERVGDLIIKVARD 423 (1822)
Q Consensus 344 DWNeEfQ~l~eLP~~t~~ER~~RdR~ifkl~sdFVdaA~~gA~~VI~g~v~~n~~~inp~~~~~~~~~~~~nIff~~a~D 423 (1822)
|||||||+++|||++|++||+.|+|+|++|++|||+||++||++||+|++ .|+||.++..+++|+||||||+|+.|
T Consensus 1 DWNeefQ~~~elp~~t~~er~~r~r~l~~l~~dFv~aA~~~a~~Ii~~~~----~p~n~~~~~~~~~y~~nnIff~~~~d 76 (221)
T PF13236_consen 1 DWNEEFQSLRELPRETLEERIERDRKLSKLHSDFVEAATRGAMAIIDENI----LPINPKEIKPGQKYLYNNIFFSFADD 76 (221)
T ss_pred ChHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc----CCCCCCCCCCcCEEEECCEEEEEecC
Confidence 89999999999999999999999999999999999999999999999988 66788888889999999999999999
Q ss_pred CCCccccccccCCCCcccCchHHhHHHhhhhcccchhccCCCCCCcccceEEEeecCcEEEEE--Ecccc--cCCCCCCC
Q 000230 424 VPDASVKLDCKNDGSQVLGMSQKDLTQRNLLKGITADESTTIHDTSTLGVVIIRHSGYTAVVK--VSAEV--NWDGHPIP 499 (1822)
Q Consensus 424 ~~d~~~~~d~k~~G~~~~g~~~A~~Aa~n~LKGv~a~~~~dv~gL~tlgtvvVDYrGyRvvaq--vPg~~--~~~~s~vy 499 (1822)
..+.+ ...+|+++|++|++|||||+++|++++++||+||+|||||||||||+|| +||.. ++..+++|
T Consensus 77 ~~~~~---------~~~ggdeaA~~aa~~dLkg~~~~~~~~~~~l~~~lt~iVDY~G~Rv~AqsilPg~~~~~~~~~vvY 147 (221)
T PF13236_consen 77 SRGIY---------ENLGGDEAARKAAGHDLKGVNALNQADIPGLHTPLTAIVDYRGYRVLAQSILPGILNREQESTVVY 147 (221)
T ss_pred ccccc---------ccccccHHHHHHhhccHHHHHHHHhCCCCCCcccCEEEEEeCCEEEEEEecCCcCCCCCCCceEEE
Confidence 88876 3446688999999999999999999999999999999999999999999 79977 56678999
Q ss_pred CCccccccCCCCCcccchhhHHHhhcccCCCCCCcccccc----------ccCCcchhhhhchhhhHHHHhHHhhccCC
Q 000230 500 QDIDIEDQSEGGANALNVNSLRMLLHKSSSPQSSSAFQRS----------QSTDFENLRSARSLVRKVIEDSLLKLQEE 568 (1822)
Q Consensus 500 gsidi~~~~egG~~~~~~~~l~~llhk~~~~~~s~~~~~~----------~~~d~e~~~~~~~~~R~y~~d~~~~l~~e 568 (1822)
|++| +|.++++.+.+..++.+.+... .+++| +..+.+++++.|.|+|+|++|++|.+|.+
T Consensus 148 Gs~d------~g~~i~~~~~~~~~l~~~a~~l---~Lk~H~v~~~~~~~~l~~s~d~kg~~G~D~R~YilDl~R~~P~d 217 (221)
T PF13236_consen 148 GSSD------GGKTIHSDEEFHELLKKIAKAL---NLKPHKVGDSEGSVELYGSADIKGIIGSDGRYYILDLARTFPPD 217 (221)
T ss_pred CCcC------CCCeecCCHHHHHHHHHHHHHh---CcCcceecCCCCcEEEEeeeeeEEEEcCCCCEEEEeccccCCCC
Confidence 9998 6889999877666554443331 22222 33568899999999999999999988765
No 3
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=100.00 E-value=9.4e-44 Score=457.62 Aligned_cols=906 Identities=42% Similarity=0.567 Sum_probs=640.5
Q ss_pred CCCCCcccCcccccccccCCCCchhhhccccccccccCCCCeEEEEEEEeCCccEEEEEeCcccccCCCCCcccchHHHH
Q 000230 188 MCPPPRLGQFYDFFSFSHLTPPLQYIRRSTRPFLEDKTDDDFFQIDVRVCSGKPMTIVASREGFYPAGKRPLLFHSLVSL 267 (1822)
Q Consensus 188 l~~~pk~~~~~k~~s~S~~nPPp~~~r~~~~~~~~~~~~Gdl~yl~v~t~egk~~~Ita~~~GFy~~~~~~~~~HsLv~L 267 (1822)
|.+.+++.+++.+|..-+.+||.-|.- + ++ +.-.+|.|.+-++.+.||..|+-+.+.|||...+...+||+++||
T Consensus 49 l~~~~~v~~~~q~l~~~~~t~~~tc~~---L-~~-~~~~~d~~~~~~~i~~~~~~~~l~~v~~pY~~re~~~Hv~~vrdl 123 (1236)
T KOG1839|consen 49 LSSFSKVQDVRQVLLDRPLTCYITCLS---L-LL-DESKLDYFHIKKKISSGKPGCVLASVLGPYTPREARLHVHSVRDL 123 (1236)
T ss_pred ecCcchhhhHHHHHhcccccCceeEEE---E-Ee-cccccccccceeeecCCCcceEEEEecccCChHHHHHHHHHHHHH
Confidence 445677777778888888888877643 1 12 235789999999999999999999999999999988999999999
Q ss_pred HHhhCHHHHHHHHHHHHHHhccCCCcCCCCcccCcccccCCccCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCcchHH
Q 000230 268 LQQISRPFDAAYKALMKAFTEHNKFGNLPYGFRANTWVVPPVVADNPSIFPHLPVEDENWGGSGGGQGRDGKHDNRQWAR 347 (1822)
Q Consensus 268 L~qiSp~F~~~f~~l~k~~~~~~~f~~~p~~~~~~~Wl~p~~~~~~~~~~~~~~~ed~~~~~~~~g~g~d~~~~~RDWNe 347 (1822)
| .+..|..+|..+|+++..++||.++|+++..++|++|. +....|..+|.||+.|+++++ .||.|. -|+.
T Consensus 124 L--~~~~~~sa~~~~~~a~~~~~~~~~i~~~~~~~t~~~p~---d~~~~~~~lp~~~e~~~~~~~-~~~~~~----~~~~ 193 (1236)
T KOG1839|consen 124 L--SSSDFASAYSPLMKAFFDHNKLGNIPLGDRKNTWVDPE---DCKPPFPDLPGEDERWGGDGG-EGRSGP----KWAK 193 (1236)
T ss_pred H--hcCChhhhhcchhhhhhhhccccCCCccccccCCCCcc---ccCCCCCCCCccccccCCCCC-cCCCCc----ccch
Confidence 9 99999999999999999999999999999999999994 444667889999999999887 888774 9999
Q ss_pred HHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhccC-C-CCCCCCCCCcceeEEECCEEEEEeecCC
Q 000230 348 EFAILAAMPCKTAEERQIRDRKAFLLHSLFVDISLFKAVAAIKTLIESN-Q-HSLNDPAASIVHEERVGDLIIKVARDVP 425 (1822)
Q Consensus 348 EfQ~l~eLP~~t~~ER~~RdR~ifkl~sdFVdaA~~gA~~VI~g~v~~n-~-~~inp~~~~~~~~~~~~nIff~~a~D~~ 425 (1822)
+|-.|.-+||+++++|..|++.+|.||..|++.-++.++++|+|++.+| . .-++| -+.+. +++..++..|..
T Consensus 194 ~~~~La~sp~nppp~~~~~~g~l~yL~v~t~e~~~~~it~~~~gfyvNns~~~~fdP-~p~~~-----~~ls~sl~~ll~ 267 (1236)
T KOG1839|consen 194 CFRVLAFSPCNPPPERRVLDGDLFYLHVVTLEGSVFHITAIIKGFYVNNSQSSKFDP-SPSGS-----GDLSHSLIRLLA 267 (1236)
T ss_pred HHHHHhcCCCCCCCcceeecccEEEEEEEEeeccEEEEEEeeeeEEEeccccCCCCC-CCCCC-----ccchhhHHHHHH
Confidence 9999999999999999999999999999999999999999999988777 2 12233 22222 788889998887
Q ss_pred CccccccccCCCCcccCchHHhHHHhhhhcccchhccCCCCCCc----------ccceEEEeecCcEEEEEEcccccCCC
Q 000230 426 DASVKLDCKNDGSQVLGMSQKDLTQRNLLKGITADESTTIHDTS----------TLGVVIIRHSGYTAVVKVSAEVNWDG 495 (1822)
Q Consensus 426 d~~~~~d~k~~G~~~~g~~~A~~Aa~n~LKGv~a~~~~dv~gL~----------tlgtvvVDYrGyRvvaqvPg~~~~~~ 495 (1822)
+.+-+|- +-++...---.+.+.++|+.++ ....+..++=|- -++-..++.+||.-..-..+.
T Consensus 268 ~~S~kfk-k~~~~~~~~~s~~~~~er~~~~--~~~~sw~~~~~~~~~d~~r~~~A~~~~~~~~~G~~rdwNee~Q----- 339 (1236)
T KOG1839|consen 268 SLSPKFK-KAFQTILKKLSSEELAERVLLK--TPDESWIVHPLPHLADAARAEEALTGYYLEHIGYTRDWNEELQ----- 339 (1236)
T ss_pred hhChHHH-HHHHHHHHHHhhhhHHHhcccc--CCCccccccCCCchHHHHhhHHHhccceeccCccccchhhhhh-----
Confidence 7776652 3333333333456778888888 554444443332 112445555665433211110
Q ss_pred CCCCCCccccccCCCCCcccchhhHHHhhcccCCCCCCccccccccCCc-chhhhhchhhhHHHHhHHhhccCCCCCccc
Q 000230 496 HPIPQDIDIEDQSEGGANALNVNSLRMLLHKSSSPQSSSAFQRSQSTDF-ENLRSARSLVRKVIEDSLLKLQEEPSKHTR 574 (1822)
Q Consensus 496 s~vygsidi~~~~egG~~~~~~~~l~~llhk~~~~~~s~~~~~~~~~d~-e~~~~~~~~~R~y~~d~~~~l~~e~~~~~~ 574 (1822)
..-...-.+++++|.+..+.++++--.++..... ...++...+ -.-.......+.|+-|.+-.+.....+...
T Consensus 340 --t~re~~~~~l~dr~~rer~~~Kv~~df~~~a~~G----a~~vi~~ni~ainp~e~~~~qm~i~~nIf~s~~~dv~~~y 413 (1236)
T KOG1839|consen 340 --TTREMPHKDLPDRGARERNLNKVRGDFVKAATRG----ALAVISGNIVAINPEEPTILQMFIWNNIFFSEGFDVRGHY 413 (1236)
T ss_pred --hhhhcCccccchhhhhhhccccchhhhccccccc----ccccccCccccCCCchHHHHHHHHHhhhheeeeccccccc
Confidence 0111223557888999998888888888765541 222211110 011111224567777776555544433322
Q ss_pred ccchhhHHHHHHHHHhhhccccccccCcCCCcchhhhccCcccchhhhhhccccccccccccCCCCCCCCCcccccCCCC
Q 000230 575 SIRWELGACWVQHLQNQASGKNESKKTEEPKLEPAVKGLGKQGALLKDIKKKTDGRINKTEQGKQVPADNNLDMNKKSDA 654 (1822)
Q Consensus 575 ~LRpELv~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 654 (1822)
|++.+|+++++ ....+...++..+......+++||+.....++.....+.... +.....
T Consensus 414 ----~~~g~dvaa~~-a~s~dl~g~r~~n~~d~~~l~~Lgt~~vDy~g~rv~Aq~i~~-------------p~~l~~--- 472 (1236)
T KOG1839|consen 414 ----KLGGGDVAAYA-APSTDLNGKRLYNTVDVPGLKTLGTTVVDYRGYRVVAQVIIN-------------PGILEG--- 472 (1236)
T ss_pred ----cccchhHHhhh-hccccccccccccccchhhhcchhheeeeccCceEEEEeecC-------------Ccchhc---
Confidence 88999999987 444455556666667777888998887666655554432211 000000
Q ss_pred chhhhhhhchHHHHHHHHHhhcHHHHhhhcccccccCCCChHHHHHHHHHHHhhcchHHHHHHhccCCCCCCChh-hHHH
Q 000230 655 TDQKELEKRDEEMEELWKKLISESAYLRLKESETGLHLKSPDELIEMAHKYYADTALPKLVADFGSLELSPVDGR-TLTD 733 (1822)
Q Consensus 655 ~~~~~~~~~~ee~~~~~~~~l~~~a~~rl~~~~~~~~~k~~eq~v~~A~~~L~~~~IP~~V~dl~~l~~~P~Dg~-sLte 733 (1822)
++.+. .........|.++...+|.++.+..++++..+....+.++.. +.+++...+...++.+.||+ .|.+
T Consensus 473 -d~~~~--~~~g~~~~~K~~~~~e~~~~l~~~~s~~l~i~~h~~i~~~d~-----~~~eL~~s~eskgi~g~DgR~yllD 544 (1236)
T KOG1839|consen 473 -DQSQS--VIYGPVDEGKELLSEEAYQRLLERASKLLLISPHPVINAKDT-----VLPELGISFESKGISGVDGRHYLLD 544 (1236)
T ss_pred -ccccc--eeeccccccccccccHHHHHhhcccccccccCCccccchhhc-----cccccccccccccccCCCcchhHHH
Confidence 00000 112223345678899999999999999999988888888743 78888888999999999999 9999
Q ss_pred HHHHhhhhhhccc--hHHHHhhcCchhhhhhHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhhhccccccCCCc
Q 000230 734 FMHTRGLQMCSLG--RVVELADKLPHVQSLCVHEMVVRAYKHILQAVVAAVDNVADLAASIAACLNILRFGWRWNHESCP 811 (1822)
Q Consensus 734 ~LH~rGINmRyLG--kVa~la~~L~~lk~L~~~EmiaRaaKhILr~~l~~v~~~~~ls~~IA~~LN~Lrf~~~~~~~~~~ 811 (1822)
+||.+++.|+||| ++.++..++||...+|..||+.+.+++.+...+..+ -++.+
T Consensus 545 L~~t~Pld~~~L~~~~~~~~~~k~pHkl~~lr~Eli~~f~~~~l~~~i~~~-------------e~~~~----------- 600 (1236)
T KOG1839|consen 545 LMHTRPLDLNFLGVEAVEELAEKYPHKLSLLRPELILKFYEHRLLAFIVAV-------------ENAAE----------- 600 (1236)
T ss_pred HHhccCCcccccchhhhhhccccCchhhhhcCHHHHHHHHHHHHHHHHHHH-------------hcchh-----------
Confidence 9999999999999 899999999999999999999999999877544332 23330
Q ss_pred hhhhHHHHHhhhhhhhhccccccccCCCCCcCcHhhHHHHhHHHHhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhh
Q 000230 812 DLRKFSILRGLSHKVGLELVPRDYDMDSESPFRKSDIISMVPVYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKA 891 (1822)
Q Consensus 812 ~l~k~~LLrel~~k~GLql~~r~Y~f~~a~pf~~eDI~~alpvvK~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eA 891 (1822)
+|+++...+|...|+....++.++....+.+.+ +.+. -..++|.+++..+
T Consensus 601 ----------------------~~~~ds~~~~~~~d~~~~~~v~~l~~~is~d~~---eS~~-----~~~~dav~~~~~a 650 (1236)
T KOG1839|consen 601 ----------------------DYGFDSSNPFKKSDAIGLVPVHKLVNCISADGR---ESSK-----LSLDDAVKYATKA 650 (1236)
T ss_pred ----------------------hccCCccccccccchhhHHHHHHHHHhhccccc---cccc-----cchHHHHHHHHHH
Confidence 677888888888899998898888887766665 1111 1244899998888
Q ss_pred hhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 000230 892 LSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKY 971 (1822)
Q Consensus 892 L~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~ 971 (1822)
+...-..+++.|...+-++.+ +.+++..+++.+|..+.++++++.++.+|.+||+++..|..++.++++...+++|+.+
T Consensus 651 l~k~~~~~~~~~fnp~~f~s~-~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~ 729 (1236)
T KOG1839|consen 651 LVKLVAVCGPYGFNPAGFYSL-AVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHY 729 (1236)
T ss_pred HHHHHhhhcccccCccccccC-ceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHH
Confidence 887777888877666655555 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHH
Q 000230 972 VNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSL 1051 (1822)
Q Consensus 972 ~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~ee 1051 (1822)
-.+++.+.-..+|..||.++..+.+.+++-...| +-+++++..+++.+.+.+|.+|..++.+ +.|+.++..++.
T Consensus 730 ~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~S-H~ln~~ls~~~~--- 803 (1236)
T KOG1839|consen 730 VGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAAS-HALNCLLSVMEA--- 803 (1236)
T ss_pred hhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHhhcccc---
Confidence 9999999999999999999999999888877777 8899999999999999999999999988 778877766555
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhccccccHHHHHHHHcCCCH---HH
Q 000230 1052 SVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASISSKGHLSVSDLLDYIAPDTD---SK 1128 (1822)
Q Consensus 1052 Ai~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~qeAl~~g~~~p~~~~a~~~~lSv~eLl~yi~~Gd~---ek 1128 (1822)
|..+.+..+++++.. + ...+.+. .+.+.++..++..++++..+|++||..... ..
T Consensus 804 av~~~~t~~~~~ka~----~-----------------~~~~~~~-~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~ 861 (1236)
T KOG1839|consen 804 AVQKEQTTLEILKAK----D-----------------LRTQDAA-AGTPKPDASISSKGHLSVSDLLKYITADSKNKFTA 861 (1236)
T ss_pred cCCCccchHHHHhhh----h-----------------hhhhhhc-cCCCCcccccccccccchhHHHHhccccccccccc
Confidence 666666666655433 1 1112222 277888888889999999999999987222 22
Q ss_pred HHHHHHHHHHHHHccCCCCChhhHHHhh-hhhhhCCCCchhhhhhHHHHhhhhcccccccccCCCCCCCccccccccccc
Q 000230 1129 ARDAQRKARAKLKGKPGQTCETVSDEYQ-KDEIVSPTSPVVENSSDKENKSEVHLLEPKIEKSDSGLPDQSIMIKNDDLE 1207 (1822)
Q Consensus 1129 A~~~~~KAL~i~k~~lG~~Hp~ia~~~~-~~~ilg~~hp~t~~~~~~L~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 1207 (1822)
+.+. +++.......|.-......... -.++--..+-....+. -.+..-.-.+..+.......+.+..+.+.+..+
T Consensus 862 ~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~--~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e 937 (1236)
T KOG1839|consen 862 AHDV--KSRETILLKNGKSKIAVEKLEKKKRELQKPARNYDFESS--EPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPE 937 (1236)
T ss_pred hhhh--hHHHHHhhhcccchhHHHHHHHHhhhcchhhhhcccccc--CCCCCCCcccccccccccccCCCccchhhhhhh
Confidence 2221 2222222233321111111100 0111111110000000 000000000111111111122333333444444
Q ss_pred --cccccccCccccccCCCccccc-cccccCCCccccccc
Q 000230 1208 --QEENSDEGWQEAVPKGRSLTAR-RSSGSRRPSLAKLDT 1244 (1822)
Q Consensus 1208 --~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~k~~~ 1244 (1822)
.+...+++|+++.-++||.+.. +.+++++|.+++-+.
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~ 977 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYR 977 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHH
Confidence 3666788888877788887766 578898887766644
No 4
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.93 E-value=2.7e-24 Score=267.05 Aligned_cols=289 Identities=26% Similarity=0.309 Sum_probs=259.8
Q ss_pred ChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000230 862 SADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 941 (1822)
Q Consensus 862 s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~l 941 (1822)
+....++..+|..|..+|+|+.|+.++++|+++.....|.+|+.++.++..+|.+|..+++|.+|+.+|++|+.+.+.++
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 34566777799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 942 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 942 G~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
|.+||.++.++.|||.+|+..|+|++|..|+++|+.|++..+|..|++++..+.+++.++..++++++|+.+|+++++++
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH------HHHHH-
Q 000230 1022 QRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKAL------EQQEA- 1094 (1822)
Q Consensus 1022 ~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl------~~qeA- 1094 (1822)
...+|.+|+.++.++.+||.+|..+|+|.+|.++|++|+++.++..|..|..+...+..|+..+.+.. .+...
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888864432221 11111
Q ss_pred ----HHcCCCCCchhhhccccccHHHHHHHHcCCCHHHHHHHHHHHHHHHHccCCCCChhhHHHh
Q 000230 1095 ----ARNGTPKPDASISSKGHLSVSDLLDYIAPDTDSKARDAQRKARAKLKGKPGQTCETVSDEY 1155 (1822)
Q Consensus 1095 ----l~~g~~~p~~~~a~~~~lSv~eLl~yi~~Gd~ekA~~~~~KAL~i~k~~lG~~Hp~ia~~~ 1155 (1822)
...|..+|++.....+.. ..|..+|++++|+++..+++...++.+|..+++....-
T Consensus 436 ~~i~~~~g~~~~~~~~~~~nL~-----~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
T KOG1840|consen 436 KDIMKLCGPDHPDVTYTYLNLA-----ALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEK 495 (508)
T ss_pred HHHHHHhCCCCCchHHHHHHHH-----HHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHH
Confidence 124788888876544322 25888899999999999999999999999777665443
No 5
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.90 E-value=4e-22 Score=247.77 Aligned_cols=230 Identities=24% Similarity=0.271 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
+..+..+|..|..+++|.+|+.+|++||.+++.++|.+||.++.++.+||.+|+..|+|++|..++++|+.|+++.+|..
T Consensus 241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~ 320 (508)
T KOG1840|consen 241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS 320 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC
Confidence 34445699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRL 1024 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~ 1024 (1822)
|+++...+.+++.++..++++++|+.+|++++.++....|++|+.++.++.|||.+|+.+|+|++|.++|++|+.+.++.
T Consensus 321 ~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 321 HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL 400 (508)
T ss_pred hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000230 1025 LGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAA 1095 (1822)
Q Consensus 1025 ~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~qeAl 1095 (1822)
.|..+..++..+.+||..|..++++.+|.+.|.++..|+ +.+|++|+.+...+.+|+.++.+.+....+.
T Consensus 401 ~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 401 LGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred ccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHH
Confidence 999999999999999999999999999999999999999 9999999999999999998877665555443
No 6
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=99.87 E-value=6.7e-23 Score=194.14 Aligned_cols=72 Identities=39% Similarity=0.665 Sum_probs=69.1
Q ss_pred ecCcchHHHHHHHhhhcccccccccccccccccCcccCCcccccccC----CceEEEeccCCCHHHHHHHHHHHHHHh
Q 000230 45 GISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSLK----PCHLTVEEEDYSEEQAVAHIRRLLDIV 118 (1822)
Q Consensus 45 ~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~lk----~~~L~lVeepYte~~Ar~Hvrrvrdl~ 118 (1822)
|+++|+|+||||+|+++|+||+||||+|. ++|++||||.||++++ ||+|+|||+|||+|+||+||+||||||
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~--~~g~~L~~~~el~~i~~~~~~~~L~lve~pYt~r~a~~Hv~r~rdli 76 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLE--HNGQRLDDFVELSEIEGIKDGCVLELVEEPYTEREAREHVRRVRDLI 76 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEE--ECCCccCCchhhhhhhCCCCCcEEEEEecCCCHHHHHHHHHHHHhhC
Confidence 68999999999999999999999999997 5999999999999976 699999999999999999999999986
No 7
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.83 E-value=3.5e-19 Score=213.65 Aligned_cols=257 Identities=19% Similarity=0.142 Sum_probs=214.3
Q ss_pred HhhHHHHhHHH-HhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCH
Q 000230 845 KSDIISMVPVY-KHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDF 923 (1822)
Q Consensus 845 ~eDI~~alpvv-K~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~ 923 (1822)
.++|..++..+ +.+.-.+..+.+++++|.+|...+.|++|+..|++|+.+ .|..+.++.|||.+|+.+|+.
T Consensus 231 ~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~l 302 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLL 302 (966)
T ss_pred cchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccH
Confidence 34666655544 445556778899999999999999999999999999987 577889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000230 924 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEG 1003 (1822)
Q Consensus 924 eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~ 1003 (1822)
+-|+..|++|+++ .|....+|+|||.++...|+..+|..+|.+||.++ |..+.+++|||.+|.+
T Consensus 303 dlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E 366 (966)
T KOG4626|consen 303 DLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYRE 366 (966)
T ss_pred HHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHH
Confidence 9999999999997 58889999999999999999999999999999984 5556789999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000230 1004 LGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEY 1083 (1822)
Q Consensus 1004 lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~ 1083 (1822)
+|.+++|..+|++||++. |..+.++.|||.+|.++|++++|+.+|++|+.| .|..++++.+++.
T Consensus 367 ~~~~e~A~~ly~~al~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGn 430 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALEVF--------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGN 430 (966)
T ss_pred hccchHHHHHHHHHHhhC--------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcch
Confidence 999999999999999984 778999999999999999999999999999998 7889999999987
Q ss_pred HHHHHHHHHHHHHc----CCCCCchhhhccccccHHHHH-HHHcCCCHHHHHHHHHHHHHHHHccCCCCChhhH
Q 000230 1084 FESKALEQQEAARN----GTPKPDASISSKGHLSVSDLL-DYIAPDTDSKARDAQRKARAKLKGKPGQTCETVS 1152 (1822)
Q Consensus 1084 l~qqAl~~qeAl~~----g~~~p~~~~a~~~~lSv~eLl-~yi~~Gd~ekA~~~~~KAL~i~k~~lG~~Hp~ia 1152 (1822)
.+...+.+..|+.. ..-.|..+- +..+|. .|-..|+..+|+..|+.||++ .++.|+.-
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~nPt~Ae------AhsNLasi~kDsGni~~AI~sY~~aLkl-----kPDfpdA~ 493 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQINPTFAE------AHSNLASIYKDSGNIPEAIQSYRTALKL-----KPDFPDAY 493 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcHHHH------HHhhHHHHhhccCCcHHHHHHHHHHHcc-----CCCCchhh
Confidence 77766666555421 112222221 222333 488889999999999999965 45555443
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.81 E-value=1.1e-19 Score=217.83 Aligned_cols=240 Identities=19% Similarity=0.142 Sum_probs=206.0
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000230 854 VYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 933 (1822)
Q Consensus 854 vvK~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkA 933 (1822)
++|.+......|-++-++|.++..+|+...|+.+|++|+.+ .|..+.+|.|||.+|..++.|++|+..|.+|
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAVSCYLRA 278 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHHHHHHHH
Confidence 44555555666778899999999999999999999999998 7889999999999999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000230 934 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 1013 (1822)
Q Consensus 934 L~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~ 1013 (1822)
+.+ .|..+.++.|||.+|+.+|+.+.|+..|++||++ .|....+|+|||..+...|+..+|..+
T Consensus 279 l~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 279 LNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred Hhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHH
Confidence 987 5888999999999999999999999999999987 477778999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000230 1014 LHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQE 1093 (1822)
Q Consensus 1014 leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~qe 1093 (1822)
|.+||.++ +..+.+++|||.+|..+|.+++|..+|++|+++ .|..+.+..+|+.++++...+.+
T Consensus 343 YnkaL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~kqqgnl~~ 406 (966)
T KOG4626|consen 343 YNKALRLC--------PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIYKQQGNLDD 406 (966)
T ss_pred HHHHHHhC--------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHHHhcccHHH
Confidence 99999985 455778999999999999999999999999997 56778888899888888777766
Q ss_pred HHHcC----CCCCchhhhccccccHHHHH-HHHcCCCHHHHHHHHHHHHHH
Q 000230 1094 AARNG----TPKPDASISSKGHLSVSDLL-DYIAPDTDSKARDAQRKARAK 1139 (1822)
Q Consensus 1094 Al~~g----~~~p~~~~a~~~~lSv~eLl-~yi~~Gd~ekA~~~~~KAL~i 1139 (1822)
|+..- .-.|..+- ++.+++ .|-+.|+...|+.+|.+|+.+
T Consensus 407 Ai~~YkealrI~P~fAd------a~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 407 AIMCYKEALRIKPTFAD------ALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHHHHHhcCchHHH------HHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 65311 11122111 444555 577789999999999999976
No 9
>PF12807 eIF3_p135: Translation initiation factor eIF3 subunit 135
Probab=99.81 E-value=3.7e-20 Score=203.06 Aligned_cols=118 Identities=40% Similarity=0.775 Sum_probs=108.1
Q ss_pred cCCCCCCChhhHHHHHHHhhhhhhccchHHHHh-hcCchhhhhhHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhh
Q 000230 720 SLELSPVDGRTLTDFMHTRGLQMCSLGRVVELA-DKLPHVQSLCVHEMVVRAYKHILQAVVAAVDNVADLAASIAACLNI 798 (1822)
Q Consensus 720 ~l~~~P~Dg~sLte~LH~rGINmRyLGkVa~la-~~L~~lk~L~~~EmiaRaaKhILr~~l~~v~~~~~ls~~IA~~LN~ 798 (1822)
++.+.|+||.+|++.||++||||||||+|+..+ ..+++++.++..||++|++||+++.+++.++. ..+..+|+|||||
T Consensus 2 ~~~~~p~Dg~~L~~~lH~~GIN~RyLG~v~~~~~~~~~~l~~l~~~EmiaR~~K~i~r~~l~~~~~-~~~~~~v~~~lN~ 80 (169)
T PF12807_consen 2 SLSVSPIDGQSLTEILHRRGINMRYLGKVAKLIKSSLPHLRRLCLQEMIARAAKHILREYLRSVPQ-SELSSAVSHFLNC 80 (169)
T ss_pred CccccCcccHHHHHHHHHcCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccch-hhHHHHHHHHHHH
Confidence 466789999999999999999999999999987 45889999999999999999999999999874 6889999999999
Q ss_pred h----------------------------------------------hhccccccCCCc---hhhhHHHHHhhhhhhhhc
Q 000230 799 L----------------------------------------------RFGWRWNHESCP---DLRKFSILRGLSHKVGLE 829 (1822)
Q Consensus 799 L----------------------------------------------rf~~~~~~~~~~---~l~k~~LLrel~~k~GLq 829 (1822)
| +|+|.+...+.. .++++++||++|+++|||
T Consensus 81 llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~lt~~~l~~~I~~ev~~rf~y~l~~~~~~~~~~~~~~~LLR~ic~k~GiQ 160 (169)
T PF12807_consen 81 LLGSSSNSKPKKEKKEKNSNSKSKSDSSWSKLTPSSLWSEIEKEVKSRFRYELPEDWFDEKYGLQKIQLLREICQKTGIQ 160 (169)
T ss_pred hhCCCccccccccccchhccccccccchhhhcCcHHHHHHHHHHHHHhcCCcCchHHhhhhccccHHHHHHHHHHHhCeE
Confidence 9 777877777766 799999999999999999
Q ss_pred cccccccCC
Q 000230 830 LVPRDYDMD 838 (1822)
Q Consensus 830 l~~r~Y~f~ 838 (1822)
+..++|.|+
T Consensus 161 l~~r~Y~f~ 169 (169)
T PF12807_consen 161 LLARDYDFT 169 (169)
T ss_pred eeeecCCCC
Confidence 999999885
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.70 E-value=1e-14 Score=190.89 Aligned_cols=253 Identities=14% Similarity=0.090 Sum_probs=192.0
Q ss_pred hHHHHhHHHHhhhc----CChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCC
Q 000230 847 DIISMVPVYKHVAC----SSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGD 922 (1822)
Q Consensus 847 DI~~alpvvK~l~~----~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd 922 (1822)
++..++..++.... ....+..++.+|.+++.+|++++|+.+|++++.+ +|....++..+|.++..+|+
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~ 380 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGD 380 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCC
Confidence 34445555555443 2456778899999999999999999999999987 56778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000230 923 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEE 1002 (1822)
Q Consensus 923 ~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~ 1002 (1822)
+++|+.+|++++.+ +|....+++++|.+++.+|++++|+.+|++++.+ +|.....+.++|.++.
T Consensus 381 ~~eA~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 381 PDKAEEDFDKALKL--------NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHH
Confidence 99999999999886 3566778999999999999999999999999986 3556677899999999
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH--
Q 000230 1003 GLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAW-- 1080 (1822)
Q Consensus 1003 ~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~-- 1080 (1822)
.+|++++|+.+|++++... |....+++.+|.+|..+|++++|+.+|++|+.+.... ...+..+......
T Consensus 445 ~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~-~~~~~~~~~l~~~a~ 515 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF--------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET-KPMYMNVLPLINKAL 515 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc-ccccccHHHHHHHHH
Confidence 9999999999999999763 4456678899999999999999999999999864321 1122222222211
Q ss_pred -----HHHHHHHHHHHH-HHHHcCCCCCchhhhccccccHHHHH-HHHcCCCHHHHHHHHHHHHHHHHc
Q 000230 1081 -----LEYFESKALEQQ-EAARNGTPKPDASISSKGHLSVSDLL-DYIAPDTDSKARDAQRKARAKLKG 1142 (1822)
Q Consensus 1081 -----L~~l~qqAl~~q-eAl~~g~~~p~~~~a~~~~lSv~eLl-~yi~~Gd~ekA~~~~~KAL~i~k~ 1142 (1822)
...+. +|.... +++... |+... .+..++ .+...|++++|+.+|++|+++.+.
T Consensus 516 ~~~~~~~~~~-eA~~~~~kAl~l~---p~~~~------a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 516 ALFQWKQDFI-EAENLCEKALIID---PECDI------AVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHHhhhHH-HHHHHHHHHHhcC---CCcHH------HHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 12222 233332 333332 22211 122223 578889999999999999988664
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.61 E-value=1.6e-13 Score=179.72 Aligned_cols=183 Identities=17% Similarity=0.136 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000230 922 DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMME 1001 (1822)
Q Consensus 922 d~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy 1001 (1822)
+|++|+.+|++++.. +..++..+.++.++|.+++.+|++++|+.+|++++.+ +|....++.++|.++
T Consensus 309 ~y~~A~~~~~~al~~-----~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~ 375 (615)
T TIGR00990 309 SYEEAARAFEKALDL-----GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMN 375 (615)
T ss_pred hHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHH
Confidence 444444444444443 1235777888999999999999999999999999876 466677899999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000230 1002 EGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWL 1081 (1822)
Q Consensus 1002 ~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L 1081 (1822)
..+|++++|+.+|++++++. +....+++.+|.+|..+|++++|+.+|++++.+ .+++.. ....|
T Consensus 376 ~~~g~~~eA~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-----~P~~~~---~~~~l 439 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLN--------SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-----DPDFIF---SHIQL 439 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CccCHH---HHHHH
Confidence 99999999999999998862 334567899999999999999999999999985 344433 33333
Q ss_pred HHHHH------HHHHHHH-HHHcCCCCCchhhhccccccHHHHH-HHHcCCCHHHHHHHHHHHHHHHHc
Q 000230 1082 EYFES------KALEQQE-AARNGTPKPDASISSKGHLSVSDLL-DYIAPDTDSKARDAQRKARAKLKG 1142 (1822)
Q Consensus 1082 ~~l~q------qAl~~qe-Al~~g~~~p~~~~a~~~~lSv~eLl-~yi~~Gd~ekA~~~~~KAL~i~k~ 1142 (1822)
+.++. .|....+ ++......+.. +..++ .+...|++++|+.+|++|+++...
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~P~~~~~---------~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNFPEAPDV---------YNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHH---------HHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 33322 3333322 33322222221 12222 577889999999999999987554
No 12
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.53 E-value=1.9e-13 Score=159.11 Aligned_cols=291 Identities=15% Similarity=0.063 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
...|..+|++|+..++|++|++|...-|.+.+.+ | +...-+.+..+||.++..+|.|++|+.++.+-|.+.+.+ .|
T Consensus 55 SAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~l-g-dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gD 130 (639)
T KOG1130|consen 55 SAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLL-G-DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GD 130 (639)
T ss_pred HHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHh-c-chhccccccccccchhhhhcccchHHHHHHHHhHHHHHH--hH
Confidence 3457789999999999999999999988876655 2 334557788899999999999999999999999998875 34
Q ss_pred ChhhHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000230 945 HPDTMKSYGDLAVFYYRLQH--------------------TELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1004 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~--------------------~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~l 1004 (1822)
...-..+|+|||.+|...|+ ++.|.++|+.-|++.+.+. +......++-|||..|+-+
T Consensus 131 rv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlL 208 (639)
T KOG1130|consen 131 RVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLL 208 (639)
T ss_pred HHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhh--hHHhhcchhcccCceeeee
Confidence 45667899999999998875 4677788888888877664 4455678999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000230 1005 GNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYF 1084 (1822)
Q Consensus 1005 Gd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l 1084 (1822)
|+|+.|+.+.+.-|.|.++. |. ....-.++.|||.+|..+|+|+.|++||+.++.+..+ +|..-.. +++...|+..
T Consensus 209 Gdf~~ai~~H~~RL~ia~ef-GD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie-lg~r~vE-AQscYSLgNt 284 (639)
T KOG1130|consen 209 GDFDQAIHFHKLRLEIAQEF-GD-RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE-LGNRTVE-AQSCYSLGNT 284 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHh-hh-HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH-hcchhHH-HHHHHHhhhH
Confidence 99999999999999998774 43 2334578899999999999999999999999987654 4433222 2222223222
Q ss_pred HHHHHHHHHHHHcCCCCCchh-----hhccccccHHHHHHHHcCCCHHHHHHHHHHHHHHHHccCCCC--ChhhHHHhhh
Q 000230 1085 ESKALEQQEAARNGTPKPDAS-----ISSKGHLSVSDLLDYIAPDTDSKARDAQRKARAKLKGKPGQT--CETVSDEYQK 1157 (1822)
Q Consensus 1085 ~qqAl~~qeAl~~g~~~p~~~-----~a~~~~lSv~eLl~yi~~Gd~ekA~~~~~KAL~i~k~~lG~~--Hp~ia~~~~~ 1157 (1822)
+--..+.++|+..-..|..++ .......+|.....|-..|..++|+.+.++++++.+++-... -..+..+.+.
T Consensus 285 ytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl 364 (639)
T KOG1130|consen 285 YTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDL 364 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHH
Confidence 212222233221111111110 011111245444578888999999999999999988854432 2223333334
Q ss_pred hhhhCCCC
Q 000230 1158 DEIVSPTS 1165 (1822)
Q Consensus 1158 ~~ilg~~h 1165 (1822)
+-.+|...
T Consensus 365 ~~~lG~~d 372 (639)
T KOG1130|consen 365 ILELGQED 372 (639)
T ss_pred HHHhCCCc
Confidence 44455544
No 13
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=6.8e-12 Score=149.26 Aligned_cols=199 Identities=20% Similarity=0.195 Sum_probs=175.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
..++..-+|+.|...++.++|+.||++||.+ +|....++..+|.-|..+.+...|++.|++|+++.
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~------ 394 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN------ 394 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC------
Confidence 4566777899999999999999999999998 78889999999999999999999999999999994
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
|..-.+++.||+.|--++.+.=|+-||++|+.+. |.-...+..||.||..+++.++|+++|.+|+...
T Consensus 395 --p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-- 462 (559)
T KOG1155|consen 395 --PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-- 462 (559)
T ss_pred --chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc--
Confidence 6667899999999999999999999999999863 5555678889999999999999999999999763
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000230 1024 LLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAA 1095 (1822)
Q Consensus 1024 ~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~qeAl 1095 (1822)
. .-..++..||.+|..++++.+|.++|++.++.. ..-|...+.|..+..||+.+..+.....+|-
T Consensus 463 ---d---te~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As 527 (559)
T KOG1155|consen 463 ---D---TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEAS 527 (559)
T ss_pred ---c---cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHH
Confidence 1 134678899999999999999999999999977 6778889999999999998887666665544
No 14
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=1.4e-11 Score=137.90 Aligned_cols=170 Identities=21% Similarity=0.206 Sum_probs=147.0
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
..+..++.+|..+...|++++|+.++++++.. +|....++..+|.+|..+|++++|+.++++++.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------ 94 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Confidence 34677889999999999999999999999876 4566788999999999999999999999999986
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQ 1022 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~ 1022 (1822)
++....++.++|.++...|++++|+.++++++... .++.....+.++|.++...|++++|+.+|++++...
T Consensus 95 --~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 165 (234)
T TIGR02521 95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID- 165 (234)
T ss_pred --CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 34456789999999999999999999999998642 234455678899999999999999999999998763
Q ss_pred HhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1023 RLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1023 ~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
++ ....+..+|.++..+|++++|+.++++++.+
T Consensus 166 ----~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 166 ----PQ---RPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred ----cC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 3456788999999999999999999998875
No 15
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.43 E-value=4.7e-12 Score=147.76 Aligned_cols=210 Identities=20% Similarity=0.205 Sum_probs=178.0
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHcCC--------------------hHHHHHHHHhhhhhhhhccCCCchhHHHHHHH
Q 000230 853 PVYKHVACSSADGRTLLESSKTSLDKGK--------------------LEDAVNYGSKALSKLMSVCGPYHRMTAGAYSL 912 (1822)
Q Consensus 853 pvvK~l~~~s~~A~~L~~lG~~~~~~G~--------------------yeeAie~~~eAL~l~~~i~G~dhp~~a~al~n 912 (1822)
.+.+.+.++-..+++||++|.+|...|+ ++.|.++|.+-|++.+.. .+.....+||.+
T Consensus 123 d~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l--gDr~aqGRa~Gn 200 (639)
T KOG1130|consen 123 DFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL--GDRLAQGRAYGN 200 (639)
T ss_pred HHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh--hhHHhhcchhcc
Confidence 3456667777889999999999998876 467888888888887765 234456789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000230 913 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAA 992 (1822)
Q Consensus 913 LA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~ 992 (1822)
||..|+.+|+|++|+.+.+.-|.|.+.. | |...--.++.|||.++.-+|+++.|+++|++++.+..++. +...-+.
T Consensus 201 LGNTyYlLGdf~~ai~~H~~RL~ia~ef-G-DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg--~r~vEAQ 276 (639)
T KOG1130|consen 201 LGNTYYLLGDFDQAIHFHKLRLEIAQEF-G-DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG--NRTVEAQ 276 (639)
T ss_pred cCceeeeeccHHHHHHHHHHHHHHHHHh-h-hHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc--chhHHHH
Confidence 9999999999999999999999998764 3 3344567899999999999999999999999999998875 3455677
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCC
Q 000230 993 TYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSE 1070 (1822)
Q Consensus 993 al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~d 1070 (1822)
..+.||..|.-+.++++|+.|+++-|.|.+.+ .+...-+.+++.||.+|..+|..++|+.+.++.+++.+++-.+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL--~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~s 352 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQEL--EDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTS 352 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcc
Confidence 88999999999999999999999999999887 45566788899999999999999999999999999887665443
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.42 E-value=1.1e-11 Score=163.15 Aligned_cols=165 Identities=13% Similarity=-0.039 Sum_probs=113.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHHHHhhCC
Q 000230 952 YGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV----ALRYLHEALKCNQRLLGA 1027 (1822)
Q Consensus 952 y~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~ee----Al~~leeALei~~~~~G~ 1027 (1822)
+..++.++...|++++|+..|++++.+ +|+...+++++|.+|..+|++++ |+.+|++++.+.
T Consensus 215 ~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~------ 280 (656)
T PRK15174 215 AGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN------ 280 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC------
Confidence 355677788888888888888888765 35556778899999999999986 788999888763
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCCCc
Q 000230 1028 DHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAARN----GTPKPD 1103 (1822)
Q Consensus 1028 dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~qeAl~~----g~~~p~ 1103 (1822)
|..+.++.++|.++..+|++++|+.++++++.+ .++++... .+|+..+.+..+..+++.. ...+|.
T Consensus 281 --P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l-----~P~~~~a~---~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 281 --SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT-----HPDLPYVR---AMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 455678899999999999999999999999974 56665443 3344433333333322210 011222
Q ss_pred hhhhccccccHHHHHHHHcCCCHHHHHHHHHHHHHHHHccCC
Q 000230 1104 ASISSKGHLSVSDLLDYIAPDTDSKARDAQRKARAKLKGKPG 1145 (1822)
Q Consensus 1104 ~~~a~~~~lSv~eLl~yi~~Gd~ekA~~~~~KAL~i~k~~lG 1145 (1822)
.... .......+...|++++|+..|++++++....+.
T Consensus 351 ~~~~-----~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~ 387 (656)
T PRK15174 351 TSKW-----NRYAAAALLQAGKTSEAESVFEHYIQARASHLP 387 (656)
T ss_pred chHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch
Confidence 1110 000113577889999999999999988655443
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.42 E-value=3.1e-11 Score=148.72 Aligned_cols=254 Identities=13% Similarity=0.051 Sum_probs=178.9
Q ss_pred HHHHhHHHHhhhc-CChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000230 848 IISMVPVYKHVAC-SSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQA 926 (1822)
Q Consensus 848 I~~alpvvK~l~~-~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeA 926 (1822)
+..++..++.+.. .+.....++.+|.++..+|++++|+.++++++.... ........++..||.+|..+|++++|
T Consensus 51 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 51 PDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD----LTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC----CCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3344444544433 334567889999999999999999999998876411 11223456889999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 000230 927 TIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 1006 (1822)
Q Consensus 927 le~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd 1006 (1822)
+.+|++++.. ++....++..|+.++...|++++|+.++++++.... ...+......+.++|.++...|+
T Consensus 127 ~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 127 EELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG---DSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHhCCC
Confidence 9999998864 355667899999999999999999999999876521 11122345567889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000230 1007 VHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFES 1086 (1822)
Q Consensus 1007 ~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~q 1086 (1822)
+++|+.+|++++++. +....++..+|.+|...|++++|+.++++++.. ++.+ .......|...+.
T Consensus 196 ~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~--~~~~~~~l~~~~~ 260 (389)
T PRK11788 196 LDAARALLKKALAAD--------PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-----DPEY--LSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHHHHHhHC--------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----Chhh--HHHHHHHHHHHHH
Confidence 999999999998862 334567888999999999999999999999874 2221 1222223322222
Q ss_pred ------HHHHHHHHHHcCCCCCchhhhccccccHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 000230 1087 ------KALEQQEAARNGTPKPDASISSKGHLSVSDLLDYIAPDTDSKARDAQRKARAK 1139 (1822)
Q Consensus 1087 ------qAl~~qeAl~~g~~~p~~~~a~~~~lSv~eLl~yi~~Gd~ekA~~~~~KAL~i 1139 (1822)
+|....+.+... .|+... .......+...|++++|+.+++++++.
T Consensus 261 ~~g~~~~A~~~l~~~~~~--~p~~~~------~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEE--YPGADL------LLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCchH------HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 222222222111 222111 111112577789999999999999876
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.41 E-value=6.5e-11 Score=151.05 Aligned_cols=241 Identities=20% Similarity=0.194 Sum_probs=176.5
Q ss_pred hhhhhhccccccccCCCCCc----------CcHhhHHHHhHHHHhhhc----CChhHHHHHHHHHHHHHcCChHHHHHHH
Q 000230 823 SHKVGLELVPRDYDMDSESP----------FRKSDIISMVPVYKHVAC----SSADGRTLLESSKTSLDKGKLEDAVNYG 888 (1822)
Q Consensus 823 ~~k~GLql~~r~Y~f~~a~p----------f~~eDI~~alpvvK~l~~----~s~~A~~L~~lG~~~~~~G~yeeAie~~ 888 (1822)
.++.|+++..+.|..+..+| |...|+..+..+..|... .+..++.+|++|++|..+|+|++|..||
T Consensus 251 s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 251 SYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 45667888888888777766 333344444444444433 3467889999999999999999999999
Q ss_pred HhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------hcCC-------------------
Q 000230 889 SKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER------ELGL------------------- 943 (1822)
Q Consensus 889 ~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er------~lG~------------------- 943 (1822)
.+++.... ++ ..-.+..||.+|.+.|+++.|..+|++.+..... ++|.
T Consensus 331 ~~s~k~~~-----d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l 403 (1018)
T KOG2002|consen 331 MESLKADN-----DN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVL 403 (1018)
T ss_pred HHHHccCC-----CC--ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHH
Confidence 99998632 22 3556788999999999999999998887665321 1111
Q ss_pred -----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000230 944 -----DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEAL 1018 (1822)
Q Consensus 944 -----dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeAL 1018 (1822)
..|....+|..||.+|.. ++...++.+|..|++++....+. --...++|+|..++.+|++.+|..+|.+|+
T Consensus 404 ~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 404 GKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred HHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 124455677888877754 45555599999999998877654 335678999999999999999999999999
Q ss_pred HHHHHhhCCCc--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000230 1019 KCNQRLLGADH--IQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLE 1082 (1822)
Q Consensus 1019 ei~~~~~G~dh--p~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~ 1082 (1822)
..+......+. .......||||+++..++++..|.+.|+..+.. ||...++.-.|.
T Consensus 480 ~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--------hp~YId~ylRl~ 537 (1018)
T KOG2002|consen 480 GKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--------HPGYIDAYLRLG 537 (1018)
T ss_pred hhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--------CchhHHHHHHhh
Confidence 98654433221 122456899999999999999999999887763 666666555553
No 19
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=3.4e-11 Score=141.25 Aligned_cols=248 Identities=18% Similarity=0.185 Sum_probs=178.3
Q ss_pred CcHhhHHHHhHHHHhhhcCCh--hHHHHHHHHHHHHHcC--ChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHH
Q 000230 843 FRKSDIISMVPVYKHVACSSA--DGRTLLESSKTSLDKG--KLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLY 918 (1822)
Q Consensus 843 f~~eDI~~alpvvK~l~~~s~--~A~~L~~lG~~~~~~G--~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~ 918 (1822)
++..||..++.++|-+..... ...+..++...++.+| ++.+|..|...|+.+ ....+.++.+-|.+.+
T Consensus 430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--------dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--------DRYNAAALTNKGNIAF 501 (840)
T ss_pred HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--------cccCHHHhhcCCceee
Confidence 345578888777776654322 2234455665666543 588899999988887 4456778889999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000230 919 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVA 998 (1822)
Q Consensus 919 ~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA 998 (1822)
..|++++|.++|++||.- +.....+++|+|+.+..+|+.++|+++|.+...++. ..+.++..+|
T Consensus 502 ~ngd~dka~~~ykeal~n--------dasc~ealfniglt~e~~~~ldeald~f~klh~il~--------nn~evl~qia 565 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL--------NNAEVLVQIA 565 (840)
T ss_pred ecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH--------hhHHHHHHHH
Confidence 999999999999999863 456678899999999999999999999988877753 3567889999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000230 999 MMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAA 1078 (1822)
Q Consensus 999 ~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~ 1078 (1822)
.+|..+.+..+|+++|-++..+. +++| .++..||.+|-+.|+-.+|.+++-..+..| |--.+..
T Consensus 566 niye~led~aqaie~~~q~~sli-----p~dp---~ilskl~dlydqegdksqafq~~ydsyryf--------p~nie~i 629 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANSLI-----PNDP---AILSKLADLYDQEGDKSQAFQCHYDSYRYF--------PCNIETI 629 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhcccC-----CCCH---HHHHHHHHHhhcccchhhhhhhhhhccccc--------CcchHHH
Confidence 99999999999999998887653 4555 457788999999999999999987777643 3345566
Q ss_pred HHHHHHHH------HHHHHHHHHHcCCCCCchhhhccccccHHHHH--HHHcCCCHHHHHHHHHHHHHH
Q 000230 1079 AWLEYFES------KALEQQEAARNGTPKPDASISSKGHLSVSDLL--DYIAPDTDSKARDAQRKARAK 1139 (1822)
Q Consensus 1079 ~~L~~l~q------qAl~~qeAl~~g~~~p~~~~a~~~~lSv~eLl--~yi~~Gd~ekA~~~~~KAL~i 1139 (1822)
.||+.++- ++....+...+.. |... -|.-+. .|.+.|+|.+|.+.|+..-..
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaaliq--p~~~-------kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAALIQ--PNQS-------KWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcC--ccHH-------HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 67764433 3333333332222 1111 221111 577789999999888875443
No 20
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.38 E-value=1.5e-11 Score=136.66 Aligned_cols=168 Identities=20% Similarity=0.152 Sum_probs=151.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
.+.+.+.+|..|+.+|++..|...+++||+. .|....++..+|.+|..+|+.+.|.+.|++|+.+
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl------- 98 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL------- 98 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-------
Confidence 3667889999999999999999999999997 6788889999999999999999999999999998
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
+|....+++|.|.+++.+|++++|..+|++|+.. +..+..+.++-|+|.|-.+.|+++.|..+|+++|++.
T Consensus 99 -~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-- 169 (250)
T COG3063 99 -APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-- 169 (250)
T ss_pred -CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--
Confidence 6889999999999999999999999999999864 5667778899999999999999999999999999973
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 1024 LLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1024 ~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
++.......++..++..|+|..|..+++.-..
T Consensus 170 ------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 170 ------PQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred ------cCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 44455677889999999999999998875433
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.35 E-value=4.4e-11 Score=147.41 Aligned_cols=237 Identities=13% Similarity=0.057 Sum_probs=173.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
....+.+|..+...|++++|+.+|++++.. +|....++..+|.+|..+|++++|+.++++++..- ...
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~ 102 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLT 102 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCC
Confidence 344667788999999999999999999986 45667889999999999999999999999887631 111
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRL 1024 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~ 1024 (1822)
......++..||.+|...|++++|+.+|.+++.. ++....++..++.++...|++++|+.++++++....
T Consensus 103 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-- 172 (389)
T PRK11788 103 REQRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG-- 172 (389)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC--
Confidence 2234567899999999999999999999999864 345567789999999999999999999999876521
Q ss_pred hCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH------HHHHHHHHHHcC
Q 000230 1025 LGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFES------KALEQQEAARNG 1098 (1822)
Q Consensus 1025 ~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~q------qAl~~qeAl~~g 1098 (1822)
.......+..+..+|.++..+|++++|+.++++++++ .+++. .+...|+.++. +|....+.+...
T Consensus 173 -~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 173 -DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA-----DPQCV---RASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred -CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH-----CcCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1112234556788999999999999999999999885 23333 23333433332 233333322111
Q ss_pred CCCCchhhhccccccHHHHH-HHHcCCCHHHHHHHHHHHHHH
Q 000230 1099 TPKPDASISSKGHLSVSDLL-DYIAPDTDSKARDAQRKARAK 1139 (1822)
Q Consensus 1099 ~~~p~~~~a~~~~lSv~eLl-~yi~~Gd~ekA~~~~~KAL~i 1139 (1822)
.+.... ..+..+. .|...|++++|+.++++++..
T Consensus 244 --~p~~~~-----~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 244 --DPEYLS-----EVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred --ChhhHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 111100 0122222 578889999999999998875
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.34 E-value=8.6e-11 Score=158.89 Aligned_cols=198 Identities=15% Similarity=0.134 Sum_probs=161.5
Q ss_pred hHHHHhHHHHhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000230 847 DIISMVPVYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQA 926 (1822)
Q Consensus 847 DI~~alpvvK~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeA 926 (1822)
++..++..++.+.........++.+|.++...|++++|+.+|++++.+ +|.....+..++..+..+|++++|
T Consensus 524 r~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 524 DYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred CHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHH
Confidence 455566666665555444556788899999999999999999999876 344455566677777788999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 000230 927 TIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 1006 (1822)
Q Consensus 927 le~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd 1006 (1822)
+.+|++|+.+ .|. ...+.++|.++..+|++++|+.+|++++.+ +|+...+++++|.++...|+
T Consensus 596 l~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~aL~~~G~ 658 (987)
T PRK09782 596 LNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGYALWDSGD 658 (987)
T ss_pred HHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCC
Confidence 9999999987 354 678999999999999999999999999987 36666789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000230 1007 VHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLE 1082 (1822)
Q Consensus 1007 ~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~ 1082 (1822)
+++|+.+|++|+++ +|....++++||.+|..+|++++|+.+|++++.+ .++...+.....++.
T Consensus 659 ~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l-----~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 659 IAQSREMLERAHKG--------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD-----IDNQALITPLTPEQN 721 (987)
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCchhhhhhhHHH
Confidence 99999999999987 3455678999999999999999999999999985 355555555555543
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.34 E-value=9.2e-11 Score=154.67 Aligned_cols=190 Identities=17% Similarity=0.086 Sum_probs=155.1
Q ss_pred hhHHHHhHHHHhhhcCC--hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCH
Q 000230 846 SDIISMVPVYKHVACSS--ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDF 923 (1822)
Q Consensus 846 eDI~~alpvvK~l~~~s--~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~ 923 (1822)
+++..++..++.+.... ........++.++...|++++|+..|.+++.+ +|+...++++||.+|..+|++
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSGRS 262 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCc
Confidence 35555666665544332 22334456688999999999999999999986 566788999999999999999
Q ss_pred HH----HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000230 924 NQ----ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAM 999 (1822)
Q Consensus 924 ee----Ale~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~ 999 (1822)
++ |+.+|++++.+ +|+...++.+||.++..+|++++|+.++++++.+ +|+...++.++|.
T Consensus 263 ~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--------~P~~~~a~~~La~ 326 (656)
T PRK15174 263 REAKLQAAEHWRHALQF--------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--------HPDLPYVRAMYAR 326 (656)
T ss_pred hhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 96 78999999886 4777889999999999999999999999999986 3555567888999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHh
Q 000230 1000 MEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKL 1067 (1822)
Q Consensus 1000 iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~L 1067 (1822)
+|..+|++++|+..|++++.. +|.....+..+|.++..+|++++|+.+|++++++....+
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~--------~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLARE--------KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 999999999999999998875 233444566679999999999999999999999855444
No 24
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.34 E-value=8.8e-11 Score=164.18 Aligned_cols=196 Identities=15% Similarity=0.015 Sum_probs=150.7
Q ss_pred hhHHHHhHHHHhhhc-CChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCch------hHHHHHHHHHHHHH
Q 000230 846 SDIISMVPVYKHVAC-SSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHR------MTAGAYSLLAVVLY 918 (1822)
Q Consensus 846 eDI~~alpvvK~l~~-~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp------~~a~al~nLA~ly~ 918 (1822)
+++..++..++.+.. .+.++..++.+|.+++.+|++++|+.+|++++++........+. .....+..+|.++.
T Consensus 283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 355566666666544 45678899999999999999999999999999874221100000 01223446688999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH--------
Q 000230 919 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNT-------- 990 (1822)
Q Consensus 919 ~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~-------- 990 (1822)
..|++++|+.+|++++.+ +|....++..||.+|..+|++++|+++|++++.+. +++...
T Consensus 363 ~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-----p~~~~a~~~L~~l~ 429 (1157)
T PRK11447 363 KANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-----PGNTNAVRGLANLY 429 (1157)
T ss_pred HCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHH
Confidence 999999999999999997 46667889999999999999999999999999752 111110
Q ss_pred -------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 000230 991 -------------------------------AATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAI 1039 (1822)
Q Consensus 991 -------------------------------a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nL 1039 (1822)
...+..+|.++...|++++|+.+|++++++. |....+++.|
T Consensus 430 ~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--------P~~~~~~~~L 501 (1157)
T PRK11447 430 RQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--------PGSVWLTYRL 501 (1157)
T ss_pred HhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHH
Confidence 1234457788889999999999999999863 3345578899
Q ss_pred HHHHHHccCHHHHHHHHHHHHHH
Q 000230 1040 AIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1040 A~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
|.+|..+|++++|+..+++++.+
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~ 524 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQ 524 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Confidence 99999999999999999998863
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=1.2e-11 Score=153.34 Aligned_cols=170 Identities=16% Similarity=0.186 Sum_probs=150.5
Q ss_pred CChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000230 861 SSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 940 (1822)
Q Consensus 861 ~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~ 940 (1822)
.....++++.+|++|..|++++.|+..|++|+++ +|..+.+|..+|.-+..+.+|+.|..+|++||.+
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~---- 484 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV---- 484 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----
Confidence 3455788999999999999999999999999988 7788899999999999999999999999999987
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 941 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 941 lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
.|..-.+|+.||.+|.++++++.|+-+|++|+.+ +|.....+..+|.+|.++|+.++|+.+|++|+.+
T Consensus 485 ----~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 485 ----DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred ----CchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence 4667889999999999999999999999999987 5777778889999999999999999999999876
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1021 NQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1021 ~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
- +....+.+..|.++..++++++|+..+++.-++
T Consensus 553 d--------~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 553 D--------PKNPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred C--------CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 2 333456788899999999999999998876553
No 26
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.1e-10 Score=137.47 Aligned_cols=238 Identities=16% Similarity=0.116 Sum_probs=183.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
.+++|+..|..++..|++-.|.+.|..++.+ ++.....|..+|.+|....+.++-..+|.+|..+
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l------- 389 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL------- 389 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc-------
Confidence 3788999999999999999999999999998 4555556899999999999999999999999987
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
+|.....|++-|.+++-+++|++|+.-|++|+.+ .|..+..+..++.+++++++++++...|+++.+.+
T Consensus 390 -dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-- 458 (606)
T KOG0547|consen 390 -DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-- 458 (606)
T ss_pred -CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 5777788999999999999999999999999987 48888999999999999999999999999998764
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000230 1024 LLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKL----GSE---DLRTQDAAAWLEYFESKALEQQEAAR 1096 (1822)
Q Consensus 1024 ~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~L----G~d---hp~t~~a~~~L~~l~qqAl~~qeAl~ 1096 (1822)
|....+|...|.++..+++|++|+++|..|+.+-.... |.. |..+.. ..|-..+- ++..+...+-
T Consensus 459 ------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~-~a~~Ll~KA~ 530 (606)
T KOG0547|consen 459 ------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV-LQWKEDIN-QAENLLRKAI 530 (606)
T ss_pred ------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh-hchhhhHH-HHHHHHHHHH
Confidence 55667788889999999999999999999998654311 111 212211 12333333 3333332221
Q ss_pred cCCCCCchhhhccccccHHHHHHHHcCCCHHHHHHHHHHHHHHHHc
Q 000230 1097 NGTPKPDASISSKGHLSVSDLLDYIAPDTDSKARDAQRKARAKLKG 1142 (1822)
Q Consensus 1097 ~g~~~p~~~~a~~~~lSv~eLl~yi~~Gd~ekA~~~~~KAL~i~k~ 1142 (1822)
...+..+.++..++ . .-+.+|+.++|+++|++++.+-+.
T Consensus 531 e~Dpkce~A~~tla--q-----~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 531 ELDPKCEQAYETLA--Q-----FELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred ccCchHHHHHHHHH--H-----HHHHHhhHHHHHHHHHHHHHHHHh
Confidence 22333333322221 1 245569999999999999877655
No 27
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.30 E-value=3.6e-10 Score=151.74 Aligned_cols=168 Identities=19% Similarity=0.134 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
.+..++.+|.+++.+|+|++|+..|++++.. ++.....+..+|.++..+|++++|+.++.++ ...
T Consensus 55 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~-------~~~ 119 (899)
T TIGR02917 55 DAEARFLLGKIYLALGDYAAAEKELRKALSL--------GYPKNQVLPLLARAYLLQGKFQQVLDELPGK-------TLL 119 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCChhhhHHHHHHHHHHCCCHHHHHHhhccc-------ccC
Confidence 3444444455555555555555555444432 1222233444444555555544444444322 123
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
+.+....++..+|.++...|++++|+.+|++++.. +|....++..+|.++...|++++|+.++++++...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-- 189 (899)
T TIGR02917 120 DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI--------DPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-- 189 (899)
T ss_pred CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC--
Confidence 45667778888999999999999999999988765 23445567888889999999999999998887652
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1024 LLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1024 ~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
+....++..+|.++..+|++++|+..|++++.+
T Consensus 190 ------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 222 (899)
T TIGR02917 190 ------PGNVDALLLKGDLLLSLGNIELALAAYRKAIAL 222 (899)
T ss_pred ------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 233456777888888889999998888888763
No 28
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.30 E-value=6.6e-10 Score=133.12 Aligned_cols=193 Identities=18% Similarity=0.092 Sum_probs=146.3
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
..+..++.+|.++...|++++|+..|++++++ .|....+|+++|.+|..+|++++|+..|++|+++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l------ 127 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL------ 127 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------
Confidence 44788999999999999999999999999987 5677889999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN- 1021 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~- 1021 (1822)
.|+...++.++|.+++..|++++|++.+++++.+ .++++... .+ ..++...+++++|+..|.+++...
T Consensus 128 --~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~~-~~---~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 128 --DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYRA-LW---LYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred --CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHH-HH---HHHHHccCCHHHHHHHHHHHHhhCC
Confidence 4677889999999999999999999999999976 23444211 11 123445677888888886654321
Q ss_pred ---------HHhhCCC-------------------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHH
Q 000230 1022 ---------QRLLGAD-------------------HIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLR 1073 (1822)
Q Consensus 1022 ---------~~~~G~d-------------------hp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~ 1073 (1822)
.-.+|.. .+....+|++||.+|..+|++++|+.+|++|+++. .++...
T Consensus 197 ~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~----~~~~~e 272 (296)
T PRK11189 197 KEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN----VYNFVE 272 (296)
T ss_pred ccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CchHHH
Confidence 0011111 12234689999999999999999999999999741 224444
Q ss_pred HHHHHHHHHHH
Q 000230 1074 TQDAAAWLEYF 1084 (1822)
Q Consensus 1074 t~~a~~~L~~l 1084 (1822)
...+...|..+
T Consensus 273 ~~~~~~e~~~~ 283 (296)
T PRK11189 273 HRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 29
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.28 E-value=1.4e-10 Score=162.13 Aligned_cols=264 Identities=14% Similarity=0.097 Sum_probs=171.5
Q ss_pred hHHHHhHHHHhhhc-CChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhcc----------CCCch-----------
Q 000230 847 DIISMVPVYKHVAC-SSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVC----------GPYHR----------- 904 (1822)
Q Consensus 847 DI~~alpvvK~l~~-~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~----------G~dhp----------- 904 (1822)
++..++..++.+.. .+.+...++.+|.++..+|++++|+++|++++.+..... ....+
T Consensus 366 ~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 366 NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLS 445 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 44445554544433 344567788899999999999999999999987631100 00000
Q ss_pred -------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 000230 905 -------------MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKY 971 (1822)
Q Consensus 905 -------------~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~ 971 (1822)
.....+..+|.++...|++++|+.+|++++.+ +|+...+++.||.+|..+|++++|+.+
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 00123445677788899999999999999987 466677899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------------H---------
Q 000230 972 VNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKC---------------------N--------- 1021 (1822)
Q Consensus 972 ~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei---------------------~--------- 1021 (1822)
|++++.+ +|.....++.+|.++...+++++|+.+++++... .
T Consensus 518 l~~al~~--------~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 518 MRRLAQQ--------KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHc--------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 9999864 2333445666777777788888887776653110 0
Q ss_pred ---HHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHc-
Q 000230 1022 ---QRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAARN- 1097 (1822)
Q Consensus 1022 ---~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~qeAl~~- 1097 (1822)
..++. .++.....+..||.+|..+|++++|+.+|++++++ .|+++.. ...|..++....+..+++..
T Consensus 590 ~eA~~~l~-~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-----~P~~~~a---~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 590 AEAEALLR-QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR-----EPGNADA---RLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHHHHH-hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHCCCHHHHHHHH
Confidence 00000 12333456788999999999999999999999984 4666544 44444443333333332211
Q ss_pred ---CCCCCchhhhccccccHHHH-HHHHcCCCHHHHHHHHHHHHHHHH
Q 000230 1098 ---GTPKPDASISSKGHLSVSDL-LDYIAPDTDSKARDAQRKARAKLK 1141 (1822)
Q Consensus 1098 ---g~~~p~~~~a~~~~lSv~eL-l~yi~~Gd~ekA~~~~~KAL~i~k 1141 (1822)
-...|+... ....+ ..+...|++++|+.+|++++....
T Consensus 661 ~~ll~~~p~~~~------~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 661 AKLPATANDSLN------TQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHhccCCCChH------HHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 111111111 11111 257788999999999999987643
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.27 E-value=2.5e-10 Score=127.71 Aligned_cols=170 Identities=17% Similarity=0.134 Sum_probs=141.8
Q ss_pred ChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000230 862 SADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 941 (1822)
Q Consensus 862 s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~l 941 (1822)
+.....+..+|.++..+|++++|+.+|++++.+ ++....++.++|.++..+|++++|+.++++++...
T Consensus 62 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---- 129 (234)
T TIGR02521 62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--------NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP---- 129 (234)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc----
Confidence 445678888999999999999999999999987 34445688999999999999999999999998742
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 942 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 942 G~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
.++.....+.++|.++...|++++|+.++.+++... |....++..+|.++...|++++|+.++++++...
T Consensus 130 --~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 199 (234)
T TIGR02521 130 --LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--------PQRPESLLELAELYYLRGQYKDARAYLERYQQTY 199 (234)
T ss_pred --ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 245566778999999999999999999999998762 3334567899999999999999999999998862
Q ss_pred HHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 1022 QRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1022 ~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
+.+ ...+..++.++...|+.++|..+.+....
T Consensus 200 -----~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 200 -----NQT---AESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred -----CCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 222 34455778999999999999998876654
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=99.26 E-value=3e-10 Score=147.25 Aligned_cols=187 Identities=14% Similarity=0.052 Sum_probs=149.5
Q ss_pred cHhhHHHHhHHHHhhhc-CChhHHHHHHHHHHHHHc---------CChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHH
Q 000230 844 RKSDIISMVPVYKHVAC-SSADGRTLLESSKTSLDK---------GKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLL 913 (1822)
Q Consensus 844 ~~eDI~~alpvvK~l~~-~s~~A~~L~~lG~~~~~~---------G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nL 913 (1822)
..+++..++..+++... .+..+..+..+|.++... +++++|+.++++|+++ .|+.+.++..+
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a~~~l 344 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQALGLL 344 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHHHHHH
Confidence 34566677766666544 345577777888776643 3489999999999987 56777889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000230 914 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAAT 993 (1822)
Q Consensus 914 A~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~a 993 (1822)
|.++..+|++++|+.+|++|+.+ .|+...+++++|.+|..+|++++|+.++++++++. +.++ .+
T Consensus 345 g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-----P~~~---~~ 408 (553)
T PRK12370 345 GLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-----PTRA---AA 408 (553)
T ss_pred HHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCh---hh
Confidence 99999999999999999999997 47777889999999999999999999999999872 3333 33
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 994 YINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 994 l~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
+..++.++...|++++|+.++++++... .+.....+.++|.+|..+|++++|+.++++...
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 4456667778999999999999987652 233455678899999999999999999877544
No 32
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.26 E-value=1.4e-10 Score=144.15 Aligned_cols=181 Identities=18% Similarity=0.167 Sum_probs=155.4
Q ss_pred HHhHHHHhhhcC-ChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000230 850 SMVPVYKHVACS-SADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATI 928 (1822)
Q Consensus 850 ~alpvvK~l~~~-s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle 928 (1822)
.++..++..... ...+.++..+|.-+.....|+.|..+|+.||.+ .+....+|+.||++|.++++++.|+-
T Consensus 439 ~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 439 TAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred HHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhhhheeccchhhHHHH
Confidence 344444444333 335677778888999999999999999999987 56778899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000230 929 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 1008 (1822)
Q Consensus 929 ~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~e 1008 (1822)
+|++|+.| .|....++..+|.++.++|+.++|+.+|++|+.+ .|....+.+..|.++..+++|+
T Consensus 511 ~fqkA~~I--------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~~~~~~il~~~~~~~ 574 (638)
T KOG1126|consen 511 HFQKAVEI--------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCKYHRASILFSLGRYV 574 (638)
T ss_pred HHHhhhcC--------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhHHHHHHHHHhhcchH
Confidence 99999998 5888889999999999999999999999999876 2334456788999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1009 VALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1009 eAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
+|+..+++.-++. |+-+.+++.||.+|..+|+.+.|+.+|--|.++
T Consensus 575 eal~~LEeLk~~v--------P~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 575 EALQELEELKELV--------PQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHHHhC--------cchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 9999999877663 778889999999999999999999999887763
No 33
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.26 E-value=2.8e-10 Score=152.71 Aligned_cols=168 Identities=18% Similarity=0.256 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
.....++.+|.++...|++++|+.+|++++.. +|....++..++.++...|++++|+.++++++..
T Consensus 497 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------ 562 (899)
T TIGR02917 497 DFFPAAANLARIDIQEGNPDDAIQRFEKVLTI--------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL------ 562 (899)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Confidence 34455666677777777777777777776654 3344556666777777777777777777776654
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQ 1022 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~ 1022 (1822)
+|.....+..++.+|...|++++|+.++++++.. +|....++..+|.+|...|++++|+.+|+++++..
T Consensus 563 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 631 (899)
T TIGR02917 563 --NPQEIEPALALAQYYLGKGQLKKALAILNEAADA--------APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ- 631 (899)
T ss_pred --CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 2444556677777777777777777777776543 23334567778888888888888888888877652
Q ss_pred HhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1023 RLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1023 ~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
+.....+..+|.+|..+|++++|+.++++++.+
T Consensus 632 -------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 664 (899)
T TIGR02917 632 -------PDSALALLLLADAYAVMKNYAKAITSLKRALEL 664 (899)
T ss_pred -------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 223456677888888888888888888887764
No 34
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.26 E-value=4e-10 Score=129.70 Aligned_cols=179 Identities=18% Similarity=0.208 Sum_probs=148.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
..+..++.+|..++..|++++|+..|++++... +.++....++..+|.+|..+|++++|+..+++++...
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~----- 100 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH----- 100 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----
Confidence 346778999999999999999999999998873 3456667789999999999999999999999999874
Q ss_pred CCChhhHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhcCCCChhHHH--------------HHHHHHHH
Q 000230 943 LDHPDTMKSYGDLAVFYYRL--------QHTELALKYVNRALYLLHLTCGPSHPNTAA--------------TYINVAMM 1000 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~l--------G~~eeAl~~~~rAL~l~~~i~G~dhP~~a~--------------al~nLA~i 1000 (1822)
++++....+++.+|.++... |++++|+++|++++... +++..... ....+|.+
T Consensus 101 p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~ 175 (235)
T TIGR03302 101 PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVARF 175 (235)
T ss_pred cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667899999999876 88999999999998763 23332221 22478899
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 1001 EEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1001 y~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
|..+|++.+|+..|+++++.+ ++++....+++.+|.+|..+|++++|+.+++....
T Consensus 176 ~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 176 YLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999999874 45677888999999999999999999998876543
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.26 E-value=3.3e-10 Score=153.35 Aligned_cols=224 Identities=16% Similarity=0.023 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
.+..++++|.++.. |++.+|+..|.+++... |+. .....+|.++...|++++|+.+|++++..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~------- 538 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PDA-WQHRAVAYQAYQVEDYATALAAWQKISLH------- 538 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------Cch-HHHHHHHHHHHHCCCHHHHHHHHHHHhcc-------
Confidence 67777888877776 77778888777777652 221 23455666667788888888888775432
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
+.....+.++|.++...|++++|+.+|++++.+ +|.....+..++..+..+|++++|+.+|++++++.
T Consensus 539 --~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-- 606 (987)
T PRK09782 539 --DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-- 606 (987)
T ss_pred --CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--
Confidence 111233567777888888888888888887764 13333444456666666788888888888887652
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH------HHHHHH-HHHH
Q 000230 1024 LLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFES------KALEQQ-EAAR 1096 (1822)
Q Consensus 1024 ~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~q------qAl~~q-eAl~ 1096 (1822)
|. ...+.++|.++..+|++++|+.+|++++.+ .|+++.. ..+|+.+.. +|.... +++.
T Consensus 607 ------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-----~Pd~~~a---~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 607 ------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-----EPNNSNY---QAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred ------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22 456777888888888888888888887774 4555543 333333222 222222 2333
Q ss_pred cCCCCCchhhhccccccHHHH-HHHHcCCCHHHHHHHHHHHHHHH
Q 000230 1097 NGTPKPDASISSKGHLSVSDL-LDYIAPDTDSKARDAQRKARAKL 1140 (1822)
Q Consensus 1097 ~g~~~p~~~~a~~~~lSv~eL-l~yi~~Gd~ekA~~~~~KAL~i~ 1140 (1822)
..+.++.. +..+ ..+...|++++|+.+|++|++..
T Consensus 672 l~P~~~~a---------~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 672 GLPDDPAL---------IRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred hCCCCHHH---------HHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 33333222 1122 25777788888888888887553
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.24 E-value=3.3e-10 Score=146.94 Aligned_cols=167 Identities=14% Similarity=0.087 Sum_probs=135.0
Q ss_pred hhHHHHHHHHHHHHHc---CChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHc---------CCHHHHHHHH
Q 000230 863 ADGRTLLESSKTSLDK---GKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHT---------GDFNQATIYQ 930 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~---G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~l---------Gd~eeAle~~ 930 (1822)
.++..++..|..++.. +.+++|+.+|++|+++ .|..+.++..||.+|..+ +++++|+.++
T Consensus 256 ~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~ 327 (553)
T PRK12370 256 IDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHA 327 (553)
T ss_pred hHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 3445566666655443 3478999999999987 677788888999887644 3488999999
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH
Q 000230 931 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA 1010 (1822)
Q Consensus 931 qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeA 1010 (1822)
++|+.+ .|+...++..+|.++..+|++++|+.+|++|+.+ .|..+.+++++|.+|...|++++|
T Consensus 328 ~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~~~eA 391 (553)
T PRK12370 328 IKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQLEEA 391 (553)
T ss_pred HHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 999987 4777888999999999999999999999999987 356667789999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 1011 LRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1011 l~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
+.+|++|+++. +.++ ..++.++.+++.+|++++|+.++++++.
T Consensus 392 i~~~~~Al~l~-----P~~~---~~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 392 LQTINECLKLD-----PTRA---AAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHHHHHHHhcC-----CCCh---hhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999873 3333 3344566677889999999999998876
No 37
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.24 E-value=6.9e-10 Score=132.99 Aligned_cols=225 Identities=14% Similarity=0.036 Sum_probs=154.2
Q ss_pred CChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 000230 879 GKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 958 (1822)
Q Consensus 879 G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~i 958 (1822)
++.+.++..+.++|.... .+....+..++.+|.+|..+|++++|+..|++|+.+ +|....+|+++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~ 107 (296)
T PRK11189 40 LQQEVILARLNQILASRD----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIY 107 (296)
T ss_pred hHHHHHHHHHHHHHcccc----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHH
Confidence 466778888888886421 123456889999999999999999999999999997 47778899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 000230 959 YYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHA 1038 (1822)
Q Consensus 959 y~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~n 1038 (1822)
+..+|++++|+..|++++++ .|+...++.++|.++...|++++|++.|++++++. ++++.. ..+
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-----P~~~~~-~~~-- 171 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-----PNDPYR-ALW-- 171 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHH-HHH--
Confidence 99999999999999999987 35566788999999999999999999999999863 444421 112
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhccccccHHHHH
Q 000230 1039 IAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASISSKGHLSVSDLL 1118 (1822)
Q Consensus 1039 LA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~qeAl~~g~~~p~~~~a~~~~lSv~eLl 1118 (1822)
..++...+++++|+..+++++.. +.++..........+..+.. +..+..+.......+... ....-++..++
T Consensus 172 -~~l~~~~~~~~~A~~~l~~~~~~----~~~~~~~~~~~~~~lg~~~~-~~~~~~~~~~~~~~~~l~--~~~~ea~~~Lg 243 (296)
T PRK11189 172 -LYLAESKLDPKQAKENLKQRYEK----LDKEQWGWNIVEFYLGKISE-ETLMERLKAGATDNTELA--ERLCETYFYLA 243 (296)
T ss_pred -HHHHHccCCHHHHHHHHHHHHhh----CCccccHHHHHHHHccCCCH-HHHHHHHHhcCCCcHHHH--HHHHHHHHHHH
Confidence 23345678999999999876642 22222222222222322211 111111111111111110 00000223333
Q ss_pred -HHHcCCCHHHHHHHHHHHHHH
Q 000230 1119 -DYIAPDTDSKARDAQRKARAK 1139 (1822)
Q Consensus 1119 -~yi~~Gd~ekA~~~~~KAL~i 1139 (1822)
.|...|++++|+.+|++|++.
T Consensus 244 ~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 244 KYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 678889999999999999865
No 38
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.19 E-value=2.2e-09 Score=137.37 Aligned_cols=255 Identities=16% Similarity=0.142 Sum_probs=167.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI------- 936 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i------- 936 (1822)
..-.|+..|.+.+..|+|..|+.||+++|.+.... +. .....+|.|++.+|+.+.|+..|++|+++
T Consensus 163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~-~a------D~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~a 235 (1018)
T KOG2002|consen 163 NILALLGKARIAYNKKDYRGALKYYKKALRINPAC-KA------DVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSA 235 (1018)
T ss_pred chHHHHHHHHHHhccccHHHHHHHHHHHHhcCccc-CC------CccchhhhHHHhccchhhHHHHHHHHHhcChhhHHH
Confidence 34455556666666666666666666666553321 11 11223344455555555555555544443
Q ss_pred -----------------------HHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000230 937 -----------------------NERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAAT 993 (1822)
Q Consensus 937 -----------------------~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~a 993 (1822)
..+.+-. .+....+++.||..++..|+|..+..++..|+.... ..+..+..
T Consensus 236 lv~L~~~~l~~~d~~s~~~~~~ll~~ay~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-----~~~~~aes 309 (1018)
T KOG2002|consen 236 LVALGEVDLNFNDSDSYKKGVQLLQRAYKE-NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE-----NKSIKAES 309 (1018)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-----hhHHHHHH
Confidence 2222111 233455778899999999999999999999987652 34667889
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHH
Q 000230 994 YINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLR 1073 (1822)
Q Consensus 994 l~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~ 1073 (1822)
++++|.+|+.+|+|++|..||.+++... +++ ....++-||++|...|+++.|+..|++.+..+ ++...
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-----p~~~e 377 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-----PNNYE 377 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccC-----CCC--ccccccchhHHHHHhchHHHHHHHHHHHHHhC-----cchHH
Confidence 9999999999999999999999998763 223 45678889999999999999999999998864 45666
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHH-----cCCCCCchhhhccccccHHHHHHHHcCCCHHHHHHHHHHHHHHHHccCCCC
Q 000230 1074 TQDAAAWLEYFESKAL-EQQEAAR-----NGTPKPDASISSKGHLSVSDLLDYIAPDTDSKARDAQRKARAKLKGKPGQT 1147 (1822)
Q Consensus 1074 t~~a~~~L~~l~qqAl-~~qeAl~-----~g~~~p~~~~a~~~~lSv~eLl~yi~~Gd~ekA~~~~~KAL~i~k~~lG~~ 1147 (1822)
+...+..|-...++.. ...++.. ....+.+. -+|..+...+..+|...++.+|.+|+.++....+.=
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~-------~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~i 450 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS-------EAWLELAQLLEQTDPWASLDAYGNALDILESKGKQI 450 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH-------HHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCC
Confidence 6666665544331111 1111111 01111111 156666777888899999999999999988877664
Q ss_pred Chh
Q 000230 1148 CET 1150 (1822)
Q Consensus 1148 Hp~ 1150 (1822)
.++
T Consensus 451 p~E 453 (1018)
T KOG2002|consen 451 PPE 453 (1018)
T ss_pred CHH
Confidence 443
No 39
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.2e-10 Score=138.27 Aligned_cols=175 Identities=20% Similarity=0.227 Sum_probs=150.2
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
..+..++..|..|+..|++.+|.++|.+|-.+ ++..+.+|..+|..+...|+.++|+..|..|-.++. |
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~---G 378 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP---G 378 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc---C
Confidence 34556889999999999999999999999887 567788999999999999999999999999988753 2
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQ 1022 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~ 1022 (1822)
- | .-+..||.-|.++++++.|.++|.+|+.++ |.....++.+|.+....+.|.+|..||+.++...+
T Consensus 379 ~-h----lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik 445 (611)
T KOG1173|consen 379 C-H----LPSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIK 445 (611)
T ss_pred C-c----chHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhh
Confidence 2 2 235678999999999999999999999985 44445689999999999999999999999997766
Q ss_pred HhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1023 RLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1023 ~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
.+.. ..+...-++.|||.+|+.++.+++|+.++++++.+
T Consensus 446 ~~~~-e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 446 SVLN-EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred hccc-cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 6543 33466778999999999999999999999999974
No 40
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.18 E-value=1.8e-10 Score=132.04 Aligned_cols=202 Identities=17% Similarity=0.170 Sum_probs=165.9
Q ss_pred hHHHHhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000230 852 VPVYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQ 931 (1822)
Q Consensus 852 lpvvK~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~q 931 (1822)
.+.++.........++++.++++|....+...|+..|.+.|+. .|.....+..+|+++..++++++|+++|+
T Consensus 243 ekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk 314 (478)
T KOG1129|consen 243 EKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYK 314 (478)
T ss_pred HHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHH
Confidence 3445555556667788999999999999999999999998876 46667778889999999999999999999
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHH
Q 000230 932 KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVAL 1011 (1822)
Q Consensus 932 kAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl 1011 (1822)
.++.. |+..+.+...+|.-|+..++.+-|+.||++.|.+ |...|+ .++|+|.|+..-++++-++
T Consensus 315 ~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~spe---Lf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 315 LVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQSPE---LFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----cCCChH---HHhhHHHHHHhhcchhhhH
Confidence 99886 6777777888888899999999999999999887 555554 5899999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 000230 1012 RYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALE 1090 (1822)
Q Consensus 1012 ~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~ 1090 (1822)
..|++|+.... +.-..+.+|+|||.+....||+..|.+.|+-|+. .+++..+++.+|+.+..+.+.
T Consensus 379 ~sf~RAlstat-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 379 PSFQRALSTAT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLAARSGD 444 (478)
T ss_pred HHHHHHHhhcc-----CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHHhhcCc
Confidence 99999998753 3446788999999999999999999999998886 355667777777766544333
No 41
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.17 E-value=3.2e-10 Score=126.23 Aligned_cols=139 Identities=20% Similarity=0.201 Sum_probs=128.2
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000230 902 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHL 981 (1822)
Q Consensus 902 dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~ 981 (1822)
++...+.++..||.-|+..|++..|...+++||++ +|....++..+|.+|..+|+.+.|-+.|++|+.+
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--- 98 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--- 98 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc---
Confidence 45567888999999999999999999999999998 6888999999999999999999999999999987
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 982 TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 982 i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
+|....+++|.|..++.+|+|++|..+|++|+.. +.-...+.++.|+|.|..++|+++.|..+|+++++
T Consensus 99 -----~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~ 167 (250)
T COG3063 99 -----APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE 167 (250)
T ss_pred -----CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH
Confidence 6888899999999999999999999999999875 55556778899999999999999999999999998
Q ss_pred H
Q 000230 1062 I 1062 (1822)
Q Consensus 1062 I 1062 (1822)
+
T Consensus 168 ~ 168 (250)
T COG3063 168 L 168 (250)
T ss_pred h
Confidence 5
No 42
>PF05303 DUF727: Protein of unknown function (DUF727); InterPro: IPR007967 This family consists of several uncharacterised eukaryotic proteins of unknown function.; PDB: 1SGO_A.
Probab=99.10 E-value=7.6e-11 Score=119.44 Aligned_cols=63 Identities=22% Similarity=0.342 Sum_probs=49.5
Q ss_pred CCCeEEEEEEEeCCccEEEEEeCcccccC--------C------CCCcccchHHHHHHhhCHHHHHHHHHHHHHHhc
Q 000230 226 DDDFFQIDVRVCSGKPMTIVASREGFYPA--------G------KRPLLFHSLVSLLQQISRPFDAAYKALMKAFTE 288 (1822)
Q Consensus 226 ~Gdl~yl~v~t~egk~~~Ita~~~GFy~~--------~------~~~~~~HsLv~LL~qiSp~F~~~f~~l~k~~~~ 288 (1822)
.||++||+|+|+||+.||||+|.+|||++ + .....+|||.+||++|||.|++.|...+..+.+
T Consensus 29 ~~~l~Ylnv~TlEg~~~cIelt~~Gf~V~s~~~D~~~~~~~~~~~~~~~~eTl~~LL~~iSP~fr~~F~~~L~~kL~ 105 (108)
T PF05303_consen 29 TGDLIYLNVTTLEGRTYCIELTTKGFRVVSSTFDCMDPDPSQSSLHTKYFETLYALLDSISPLFRKRFGEKLSQKLE 105 (108)
T ss_dssp ETTEEEEEEE-TT--EEEEEEETTEEEEEESSTT---TT---------EESSSHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEEecCCEEEEEEECCeEEEeeecCCCcCcccccccccchHHhhHHHHHHHHCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999963 1 123468999999999999999999988776654
No 43
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.08 E-value=2.6e-08 Score=134.10 Aligned_cols=252 Identities=17% Similarity=0.086 Sum_probs=160.5
Q ss_pred HhHHHHhhhc-CChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 000230 851 MVPVYKHVAC-SSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIY 929 (1822)
Q Consensus 851 alpvvK~l~~-~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~ 929 (1822)
++.++..+.. ....+..+..+|.++..+|++++|+.+|++++++ .|....++..+|.++...|++++|+.+
T Consensus 34 A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 34 VITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3344444443 4556677888899999999999999999999886 355566778899999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH
Q 000230 930 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 1009 (1822)
Q Consensus 930 ~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~ee 1009 (1822)
+++++.. +|+... +..||.++...|++++|+..+++++.+ +|+...++..+|.++...++.++
T Consensus 106 l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 106 AKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHH
Confidence 9998886 455566 888899999999999999999999886 34455556677888888888887
Q ss_pred HHHHHHH---------------------------------------HHHHHHHhhC------CCcHHHHHHHHH-HHHHH
Q 000230 1010 ALRYLHE---------------------------------------ALKCNQRLLG------ADHIQTAASYHA-IAIAL 1043 (1822)
Q Consensus 1010 Al~~lee---------------------------------------ALei~~~~~G------~dhp~tA~~l~n-LA~~y 1043 (1822)
|+..+++ |++.++.+.. ...+....++.. ++ ++
T Consensus 169 Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~L 247 (765)
T PRK10049 169 ALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-AL 247 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HH
Confidence 7755552 2222222221 112223333333 34 34
Q ss_pred HHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCCC-chhhhccccccHHHH
Q 000230 1044 SLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQD-----AAAWLEYFESKALEQQEAARNGTPKP-DASISSKGHLSVSDL 1117 (1822)
Q Consensus 1044 ~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~-----a~~~L~~l~qqAl~~qeAl~~g~~~p-~~~~a~~~~lSv~eL 1117 (1822)
..+|++++|+..|+++++. ++..|.... +...+.... +|....+.+....+.. ..... ....+
T Consensus 248 l~~g~~~eA~~~~~~ll~~-----~~~~P~~a~~~la~~yl~~g~~e-~A~~~l~~~l~~~p~~~~~~~~-----~~~~L 316 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAE-----GQIIPPWAQRWVASAYLKLHQPE-KAQSILTELFYHPETIADLSDE-----ELADL 316 (765)
T ss_pred HHhhhHHHHHHHHHHhhcc-----CCCCCHHHHHHHHHHHHhcCCcH-HHHHHHHHHhhcCCCCCCCChH-----HHHHH
Confidence 5779999999999887653 322233211 111122222 3333333332211111 10000 11122
Q ss_pred -HHHHcCCCHHHHHHHHHHHHHH
Q 000230 1118 -LDYIAPDTDSKARDAQRKARAK 1139 (1822)
Q Consensus 1118 -l~yi~~Gd~ekA~~~~~KAL~i 1139 (1822)
..++..|++++|+.++++++..
T Consensus 317 ~~a~~~~g~~~eA~~~l~~~~~~ 339 (765)
T PRK10049 317 FYSLLESENYPGALTVTAHTINN 339 (765)
T ss_pred HHHHHhcccHHHHHHHHHHHhhc
Confidence 2577889999999999988765
No 44
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.07 E-value=5.1e-08 Score=133.75 Aligned_cols=268 Identities=12% Similarity=0.017 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
+.....+|.++...|++++|..++++++..... .+....+.++..+|.++...|++++|+.++++++...+.. |..
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g~~ 527 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-DVY 527 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-cch
Confidence 444555788999999999999999999985321 1222345677889999999999999999999999988753 433
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRL 1024 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~ 1024 (1822)
+ ....++.++|.++..+|++++|..++++++.+.....+..++....++..+|.++...|++++|..++++++.+....
T Consensus 528 ~-~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~ 606 (903)
T PRK04841 528 H-YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY 606 (903)
T ss_pred H-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc
Confidence 3 345678999999999999999999999999999887655556556667889999999999999999999999987643
Q ss_pred hCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHHHHHHHHHHHH--cCCCC
Q 000230 1025 LGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLE-YFESKALEQQEAAR--NGTPK 1101 (1822)
Q Consensus 1025 ~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~-~l~qqAl~~qeAl~--~g~~~ 1101 (1822)
. ....+.++..+|.++...|++++|..++.++..++... + .+.........+. ..........++.. .....
T Consensus 607 ~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~ 681 (903)
T PRK04841 607 Q---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG-R-YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK 681 (903)
T ss_pred C---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-c-ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC
Confidence 2 23355677889999999999999999999998876543 2 2221111111111 00000111111111 00011
Q ss_pred Cchhhhc-cccccHHHHHHHHcCCCHHHHHHHHHHHHHHHHc
Q 000230 1102 PDASISS-KGHLSVSDLLDYIAPDTDSKARDAQRKARAKLKG 1142 (1822)
Q Consensus 1102 p~~~~a~-~~~lSv~eLl~yi~~Gd~ekA~~~~~KAL~i~k~ 1142 (1822)
+...... ...........++..|++++|..++++++...+.
T Consensus 682 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~ 723 (903)
T PRK04841 682 PEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARS 723 (903)
T ss_pred CCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1100000 0000011123577889999999999999998544
No 45
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=5.9e-09 Score=128.21 Aligned_cols=245 Identities=12% Similarity=0.095 Sum_probs=175.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000230 868 LLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 947 (1822)
Q Consensus 868 L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ 947 (1822)
-+..|..++..|++.+|.-+|+.|+.. .|..+.+|..||.+....++-..|+..+++|+++ +|.
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~ 351 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPT 351 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCc
Confidence 356788999999999999999999875 7899999999999999999999999999999998 688
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHh------cCC----C------------------Ch--hHHH
Q 000230 948 TMKSYGDLAVFYYRLQHTELALKYVNRALYLL-----HLT------CGP----S------------------HP--NTAA 992 (1822)
Q Consensus 948 ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~-----~~i------~G~----d------------------hP--~~a~ 992 (1822)
...++..||..|...|.-.+|+.++..=+..- ... .+. . ++ ....
T Consensus 352 NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpd 431 (579)
T KOG1125|consen 352 NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPD 431 (579)
T ss_pred cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChh
Confidence 89999999999999999999999887765432 000 000 0 11 1133
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCH
Q 000230 993 TYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDL 1072 (1822)
Q Consensus 993 al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp 1072 (1822)
++..||.+|...|+|++|+.+|+.||.. .|.-..+|+.||..+..-.+..+|+..|++|+++. |.
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-----P~-- 496 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-----PG-- 496 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-----CC--
Confidence 5667777888888888888888887765 35666778888888887778888888888877742 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhccccccHHHH-HHHHcCCCHHHHHHHHHHHHHHHHccCCCC---C
Q 000230 1073 RTQDAAAWLEYFESKALEQQEAARNGTPKPDASISSKGHLSVSDL-LDYIAPDTDSKARDAQRKARAKLKGKPGQT---C 1148 (1822)
Q Consensus 1073 ~t~~a~~~L~~l~qqAl~~qeAl~~g~~~p~~~~a~~~~lSv~eL-l~yi~~Gd~ekA~~~~~KAL~i~k~~lG~~---H 1148 (1822)
... +..+| +.|++.|.|.+|.++|-.||.|.++..+.. +
T Consensus 497 -yVR------------------------------------~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~ 539 (579)
T KOG1125|consen 497 -YVR------------------------------------VRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPM 539 (579)
T ss_pred -eee------------------------------------eehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCc
Confidence 111 11122 368999999999999999999998854442 2
Q ss_pred h--hhHHHhhhhhhhCCCCch---hhhhhHHHHhhhhc
Q 000230 1149 E--TVSDEYQKDEIVSPTSPV---VENSSDKENKSEVH 1181 (1822)
Q Consensus 1149 p--~ia~~~~~~~ilg~~hp~---t~~~~~~L~~~~~~ 1181 (1822)
+ .+..+++ ..+.+...++ .....++|..++..
T Consensus 540 ~se~iw~tLR-~als~~~~~D~l~~a~~~~nl~~l~~~ 576 (579)
T KOG1125|consen 540 ASENIWQTLR-LALSAMNRSDLLQEAAPSRNLSALKAE 576 (579)
T ss_pred chHHHHHHHH-HHHHHcCCchHHHHhccccCHHHHHHH
Confidence 1 4555554 3333333333 33345555554433
No 46
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.04 E-value=1e-09 Score=104.77 Aligned_cols=78 Identities=31% Similarity=0.456 Sum_probs=73.1
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 000230 987 HPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQA 1065 (1822)
Q Consensus 987 hP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~ 1065 (1822)
||+++.+++++|.+|..+|+|++|+.+|++|+++ .+.+|.+++.++.++++||.+|..+|++++|++++++|++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 8999999999999999999999999999999999 77789999999999999999999999999999999999999874
No 47
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.04 E-value=3.3e-08 Score=133.04 Aligned_cols=158 Identities=16% Similarity=0.128 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 946 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp 946 (1822)
.+.....+....|++++|+..|.+++.+ .+..+.++..+|.++...|++++|+.++++++.+ .|
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P 80 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EP 80 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 3444566788999999999999998764 4566778999999999999999999999999987 35
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhC
Q 000230 947 DTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLG 1026 (1822)
Q Consensus 947 ~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G 1026 (1822)
....++..||.++...|++++|+.++++++.. +|.... +..+|.++...|++++|+..|++++++.
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~----- 146 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA----- 146 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 55677889999999999999999999999876 345555 8889999999999999999999999873
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 000230 1027 ADHIQTAASYHAIAIALSLMEAYSLSVQHEQ 1057 (1822)
Q Consensus 1027 ~dhp~tA~~l~nLA~~y~~lGd~eeAi~~le 1057 (1822)
|....++..+|.++...|..++|+..++
T Consensus 147 ---P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 147 ---PQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred ---CCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 3344556677888888888888776665
No 48
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.6e-09 Score=132.98 Aligned_cols=200 Identities=16% Similarity=0.129 Sum_probs=167.1
Q ss_pred HhhHHHHhHHHH-hhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCH
Q 000230 845 KSDIISMVPVYK-HVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDF 923 (1822)
Q Consensus 845 ~eDI~~alpvvK-~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~ 923 (1822)
.+||-+++-.++ .+...+.+++++..||.+....++=..|+..+++||++ .|....++..||..|...|.-
T Consensus 298 nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred cCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHHHHHHHHHHHhhhhhH
Confidence 345545443333 34556788999999999999999999999999999998 788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-----h------cC----------------------CCCh--hhHHHHHHHHHHHHHcCCHHHH
Q 000230 924 NQATIYQQKALDINER-----E------LG----------------------LDHP--DTMKSYGDLAVFYYRLQHTELA 968 (1822)
Q Consensus 924 eeAle~~qkAL~i~er-----~------lG----------------------~dhp--~ta~ay~nLA~iy~~lG~~eeA 968 (1822)
.+|+.++.+-+...-. . .+ ..++ ....++..||.+|+..|.|++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 9999998887654200 0 00 0111 2345678899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccC
Q 000230 969 LKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEA 1048 (1822)
Q Consensus 969 l~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd 1048 (1822)
+.+|+.||.. .|.-..+++.||-.+..-.+.++|+..|++||++. |.+.++++|||..|..+|.
T Consensus 450 iDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ 513 (579)
T KOG1125|consen 450 VDCFEAALQV--------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGA 513 (579)
T ss_pred HHHHHHHHhc--------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhh
Confidence 9999999975 58888899999999999999999999999999984 7788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhC
Q 000230 1049 YSLSVQHEQTTLQILQAKLG 1068 (1822)
Q Consensus 1049 ~eeAi~~lekAL~I~k~~LG 1068 (1822)
|++|+.||-.||.+.+.-.+
T Consensus 514 ykEA~~hlL~AL~mq~ks~~ 533 (579)
T KOG1125|consen 514 YKEAVKHLLEALSMQRKSRN 533 (579)
T ss_pred HHHHHHHHHHHHHhhhcccc
Confidence 99999999999999876443
No 49
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=3.5e-09 Score=127.19 Aligned_cols=196 Identities=17% Similarity=0.170 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 946 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp 946 (1822)
.|..+|..|.++.+-++...+|.+|..+ +|....+|+..|.+++.+++|++|+.-|++|+.+ .|
T Consensus 362 lyI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~p 425 (606)
T KOG0547|consen 362 LYIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DP 425 (606)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------Ch
Confidence 3788999999999999999999999987 6777788999999999999999999999999998 58
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhC
Q 000230 947 DTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLG 1026 (1822)
Q Consensus 947 ~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G 1026 (1822)
+.+.+|..|+.++++++++++++..|+.+..-+ |....+++..|.++..+++|++|+++|..|+++-....+
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 899999999999999999999999999998753 777788999999999999999999999999998644221
Q ss_pred CCcHHHHHHHHHHHH-HHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000230 1027 ADHIQTAASYHAIAI-ALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAAR 1096 (1822)
Q Consensus 1027 ~dhp~tA~~l~nLA~-~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~qeAl~ 1096 (1822)
- +... ..+..-|. ++.-.+++..|+.++++|+++ +|..-.+...|+++.-|...+.+|+.
T Consensus 498 ~-~v~~-~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~lQ~~~i~eAie 558 (606)
T KOG0547|consen 498 I-IVNA-APLVHKALLVLQWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQFELQRGKIDEAIE 558 (606)
T ss_pred c-cccc-hhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 1 1111 12222222 222459999999999999986 78888888888888877777777774
No 50
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.02 E-value=1.1e-09 Score=104.40 Aligned_cols=78 Identities=36% Similarity=0.523 Sum_probs=72.6
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
||+++.+|.+||.+|..+|+|++|+.+|++|+++ ...+|++|+.++.+++++|.+|..+|++++|++++++|++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 7899999999999999999999999999999999 77778899999999999999999999999999999999999763
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=9.1e-09 Score=121.29 Aligned_cols=230 Identities=17% Similarity=0.167 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCC
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lG--d~eeAle~~qkAL~i~er~lG~d 944 (1822)
.-.+.+..++.+|+++.|++.+. .++. .+......+-++|..+++.+| ++.+|..|...|+.+
T Consensus 421 lei~ka~~~lk~~d~~~aieilk----v~~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-------- 485 (840)
T KOG2003|consen 421 LEINKAGELLKNGDIEGAIEILK----VFEK---KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-------- 485 (840)
T ss_pred hhhhHHHHHHhccCHHHHHHHHH----HHHh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--------
Confidence 33556788999999999998753 2222 234445566788998888854 788999999999887
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRL 1024 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~ 1024 (1822)
+...+.++.|-|.+.+..|++++|.++|++||. ++.....+++|+|..+..+|++++|+.+|-+...+.
T Consensus 486 dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldeald~f~klh~il--- 554 (840)
T KOG2003|consen 486 DRYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL--- 554 (840)
T ss_pred cccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH---
Confidence 345677889999999999999999999999986 345677899999999999999999999999887775
Q ss_pred hCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCch
Q 000230 1025 LGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDA 1104 (1822)
Q Consensus 1025 ~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~qeAl~~g~~~p~~ 1104 (1822)
...+.+++++|.+|..+.+..+|++++-++.. +-|++|.+..- |+.++.+.+..-++...-...-.
T Consensus 555 -----~nn~evl~qianiye~led~aqaie~~~q~~s-----lip~dp~ilsk---l~dlydqegdksqafq~~ydsyr- 620 (840)
T KOG2003|consen 555 -----LNNAEVLVQIANIYELLEDPAQAIELLMQANS-----LIPNDPAILSK---LADLYDQEGDKSQAFQCHYDSYR- 620 (840)
T ss_pred -----HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc-----cCCCCHHHHHH---HHHHhhcccchhhhhhhhhhccc-
Confidence 34678899999999999999999999998876 45788876544 44444433333333321000000
Q ss_pred hhhccccccHHHHH-HHHcCCCHHHHHHHHHHHH
Q 000230 1105 SISSKGHLSVSDLL-DYIAPDTDSKARDAQRKAR 1137 (1822)
Q Consensus 1105 ~~a~~~~lSv~eLl-~yi~~Gd~ekA~~~~~KAL 1137 (1822)
+..-+.-.+..|. -|+...-+++|+.|+++|-
T Consensus 621 -yfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 621 -YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred -ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 0001111333334 3455555677777777653
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.9e-09 Score=128.19 Aligned_cols=182 Identities=19% Similarity=0.207 Sum_probs=155.9
Q ss_pred HhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000230 856 KHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 935 (1822)
Q Consensus 856 K~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~ 935 (1822)
|.....+..+.+++..|..|...|.-++|+..|..|-+++... | .-+..||+-|..++.+.-|..+|.+|+.
T Consensus 337 Kat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~----h----lP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 337 KATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC----H----LPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC----c----chHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 4444456678889999999999999999999999999886432 2 2345689999999999999999999999
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000230 936 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH 1015 (1822)
Q Consensus 936 i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~le 1015 (1822)
++ |.....++.+|.+.+..+.|.+|+.+|+.++...+.+..+ .+....+++|||.+|.+++.+++|+.+|+
T Consensus 409 i~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 409 IA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred cC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc-ccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 95 6666788999999999999999999999999776665433 33456678999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1016 EALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1016 eALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
+||.+. +..+.++..+|.+|..+|+++.|+.+|.+||.+
T Consensus 480 ~aL~l~--------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 480 KALLLS--------PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHHHcC--------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 999874 556778889999999999999999999999985
No 53
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.00 E-value=1.5e-08 Score=120.62 Aligned_cols=189 Identities=17% Similarity=0.077 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
+..+...|..|...|+|++|.+.|.+|..+..+. .+....+.+|...+.+|... ++.+|+.+|++|+.++... .+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~ 109 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GR 109 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--Cc
Confidence 4456668999999999999999999999998773 34556788888888888777 9999999999999998753 34
Q ss_pred ChhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 945 HPDTMKSYGDLAVFYYRL-QHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~l-G~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
....+.++.++|.+|... |++++|+++|++|+++++... .......++.++|.++..+|+|++|++.|++....+..
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 456688999999999999 999999999999999998753 33456778899999999999999999999998775321
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 1024 LLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1024 ~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
.- ......-..+...+.++..+||+-.|...+++...
T Consensus 188 ~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 188 NN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred cc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 10 11233445667788899999999888877776554
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=4.1e-09 Score=121.09 Aligned_cols=183 Identities=17% Similarity=0.191 Sum_probs=155.7
Q ss_pred HhHHHHhhhc-CChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 000230 851 MVPVYKHVAC-SSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIY 929 (1822)
Q Consensus 851 alpvvK~l~~-~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~ 929 (1822)
++.+++...+ .+.+...++.+++++...+++++|.++|..+++. |+....+...+|.-|+.-++.+-|+.|
T Consensus 275 AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~Alry 346 (478)
T KOG1129|consen 275 ALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRY 346 (478)
T ss_pred HHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHH
Confidence 3444444333 3456777888999999999999999999999987 666677788899999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH
Q 000230 930 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 1009 (1822)
Q Consensus 930 ~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~ee 1009 (1822)
|++.|.+ |..+|+ .++|+|.+|+..++++-++..|++|+..... .-..+.+++|||.+....|++..
T Consensus 347 YRRiLqm-----G~~spe---Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~-----~~~aaDvWYNlg~vaV~iGD~nl 413 (478)
T KOG1129|consen 347 YRRILQM-----GAQSPE---LFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-----PGQAADVWYNLGFVAVTIGDFNL 413 (478)
T ss_pred HHHHHHh-----cCCChH---HHhhHHHHHHhhcchhhhHHHHHHHHhhccC-----cchhhhhhhccceeEEeccchHH
Confidence 9999998 665554 6899999999999999999999999988632 33467889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1010 ALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1010 Al~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
|.++|+-||.- +++.+.+++|||.+-...|+..+|..++..|-..
T Consensus 414 A~rcfrlaL~~--------d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 414 AKRCFRLALTS--------DAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHHHhcc--------CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999988753 5667889999999999999999999999887664
No 55
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.98 E-value=5.5e-08 Score=112.61 Aligned_cols=271 Identities=17% Similarity=0.065 Sum_probs=198.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
.+..-.+++|..++..|+|..|+..|..|++. +|....+++..|.+|..+|+-..|+.-+.+.|++
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel------ 101 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL------ 101 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc------
Confidence 45666889999999999999999999999986 7888999999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH------------HHHHHHHHHHHHCCCHHHH
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTA------------ATYINVAMMEEGLGNVHVA 1010 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a------------~al~nLA~iy~~lGd~eeA 1010 (1822)
.|+...+...-|.++..+|.+++|..-|..+|..- ++.-... ..+......+...|++..|
T Consensus 102 --KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~-----~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 102 --KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE-----PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred --CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC-----CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhH
Confidence 58899999999999999999999999999988642 1111111 2233344456678899999
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 000230 1011 LRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALE 1090 (1822)
Q Consensus 1011 l~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~ 1090 (1822)
+.+....|+++ +..+..+..-|.+|...|+...|+.-++.+-.+-. ---+.|-.+...+..++..+....+
T Consensus 175 i~~i~~llEi~--------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~ 245 (504)
T KOG0624|consen 175 IEMITHLLEIQ--------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKE 245 (504)
T ss_pred HHHHHHHHhcC--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHH
Confidence 99999988874 66788888899999999999999999988866421 1122345556666666777767777
Q ss_pred HHHHHHcCCCCCchhhhccccc----cHHHHHHHHcCCCHHHHHHHHHHHHHHHHccCCCCChhhHHHhhhhhhhCCCCc
Q 000230 1091 QQEAARNGTPKPDASISSKGHL----SVSDLLDYIAPDTDSKARDAQRKARAKLKGKPGQTCETVSDEYQKDEIVSPTSP 1166 (1822)
Q Consensus 1091 ~qeAl~~g~~~p~~~~a~~~~l----Sv~eLl~yi~~Gd~ekA~~~~~KAL~i~k~~lG~~Hp~ia~~~~~~~ilg~~hp 1166 (1822)
+.+.+++.++|-.....+.... ++..+-..++.++|.++++.+++.+ ..++.++...++..++++.+..
T Consensus 246 iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vl-------k~ep~~~~ir~~~~r~~c~C~~ 318 (504)
T KOG0624|consen 246 IRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVL-------KNEPEETMIRYNGFRVLCTCYR 318 (504)
T ss_pred HHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-------hcCCcccceeeeeeheeeeccc
Confidence 8888888887766543333111 2222234555566666666555544 3344445555666677777764
Q ss_pred hhhh
Q 000230 1167 VVEN 1170 (1822)
Q Consensus 1167 ~t~~ 1170 (1822)
....
T Consensus 319 ~d~~ 322 (504)
T KOG0624|consen 319 EDEQ 322 (504)
T ss_pred ccCC
Confidence 4433
No 56
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5.5e-08 Score=116.67 Aligned_cols=187 Identities=18% Similarity=0.158 Sum_probs=157.2
Q ss_pred HHhHHHHhhhc-CChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000230 850 SMVPVYKHVAC-SSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATI 928 (1822)
Q Consensus 850 ~alpvvK~l~~-~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle 928 (1822)
.++.+++.... .+....++..+|.-|....+-..|++.|++|+++ .|.--++++.||++|-.++-..=|+-
T Consensus 348 KAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyRAWYGLGQaYeim~Mh~YaLy 419 (559)
T KOG1155|consen 348 KAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYRAWYGLGQAYEIMKMHFYALY 419 (559)
T ss_pred HHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHHHHhhhhHHHHHhcchHHHHH
Confidence 34445544333 2334556777899999999999999999999998 56677899999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000230 929 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 1008 (1822)
Q Consensus 929 ~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~e 1008 (1822)
||++|+.. .|.....+..||.+|..+++.++|+++|.+|+..- +. -..++..||.+|..+++++
T Consensus 420 YfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-----dt---e~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 420 YFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-----DT---EGSALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-----cc---chHHHHHHHHHHHHHHhHH
Confidence 99999987 36677889999999999999999999999998762 11 2467899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 1009 VALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1009 eAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
+|..+|++.++.. ..-|.-.+.+..+..-||.-+..++++++|-.|..+++.
T Consensus 484 eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 484 EAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred HHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 9999999999976 445666666777777799999999999999999887775
No 57
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.97 E-value=2.1e-08 Score=119.46 Aligned_cols=154 Identities=17% Similarity=0.157 Sum_probs=126.2
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000230 902 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHL 981 (1822)
Q Consensus 902 dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~ 981 (1822)
+.-+.+..|...|.+|...++|++|.+.|.+|..+.++. .+....+..|...+.+|... ++++|+.+|++|+.++..
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYRE 106 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHh
Confidence 344567788889999999999999999999999998872 34456788888888888766 999999999999999976
Q ss_pred hcCCCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 000230 982 TCGPSHPNTAATYINVAMMEEGL-GNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTL 1060 (1822)
Q Consensus 982 i~G~dhP~~a~al~nLA~iy~~l-Gd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL 1060 (1822)
.. .....+.++.++|.+|... |++++|+++|++|+++++.- ........++.++|.++..+|+|++|+..|++..
T Consensus 107 ~G--~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 107 AG--RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp CT---HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cC--cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 53 3445688999999999999 99999999999999998764 2445677889999999999999999999999887
Q ss_pred HH
Q 000230 1061 QI 1062 (1822)
Q Consensus 1061 ~I 1062 (1822)
..
T Consensus 183 ~~ 184 (282)
T PF14938_consen 183 KK 184 (282)
T ss_dssp HT
T ss_pred HH
Confidence 64
No 58
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.96 E-value=5.4e-08 Score=112.12 Aligned_cols=145 Identities=17% Similarity=0.151 Sum_probs=118.3
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000230 903 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLT 982 (1822)
Q Consensus 903 hp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i 982 (1822)
....+..++.+|..++..|++++|+..+++++... ++++....+++.+|.+|..+|++++|+..|++++...
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--- 100 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--- 100 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---
Confidence 34567789999999999999999999999998863 4566677889999999999999999999999999763
Q ss_pred cCCCChhHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHHhhCCCcHHHHH--------------HHHHHH
Q 000230 983 CGPSHPNTAATYINVAMMEEGL--------GNVHVALRYLHEALKCNQRLLGADHIQTAA--------------SYHAIA 1040 (1822)
Q Consensus 983 ~G~dhP~~a~al~nLA~iy~~l--------Gd~eeAl~~leeALei~~~~~G~dhp~tA~--------------~l~nLA 1040 (1822)
++++....+++.+|.++... |++++|++.|++++... +++..... ....+|
T Consensus 101 --p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a 173 (235)
T TIGR03302 101 --PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVA 173 (235)
T ss_pred --cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777889999999876 88999999999998753 33322221 224678
Q ss_pred HHHHHccCHHHHHHHHHHHHHH
Q 000230 1041 IALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1041 ~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
.+|..+|++.+|+..++++++.
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~ 195 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVEN 195 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHH
Confidence 8888899999999999888875
No 59
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=1.7e-07 Score=128.77 Aligned_cols=189 Identities=14% Similarity=0.030 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
+..+..+|.++...|++++|..++++++.+.+.. |..+ ..+.++.++|.+++.+|++++|..++++++.+.++..+.+
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g~~~-~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 568 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQH-DVYH-YALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ 568 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-cchH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 3456778999999999999999999999987753 3333 3456788999999999999999999999999988765545
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRL 1024 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~ 1024 (1822)
++.....+..+|.+++.+|++++|..++.+++.+..... ......++..+|.++...|++++|..++++++.+....
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~ 645 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG 645 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 555566678899999999999999999999999876432 23355678889999999999999999999998875442
Q ss_pred hCCCcHHHHHHHH-HHHHHHHHccCHHHHHHHHHHHH
Q 000230 1025 LGADHIQTAASYH-AIAIALSLMEAYSLSVQHEQTTL 1060 (1822)
Q Consensus 1025 ~G~dhp~tA~~l~-nLA~~y~~lGd~eeAi~~lekAL 1060 (1822)
+ .+........ .....+...|+.+.|..++....
T Consensus 646 -~-~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~ 680 (903)
T PRK04841 646 -R-YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAP 680 (903)
T ss_pred -c-ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcC
Confidence 1 1111111111 12234445677777777764433
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.90 E-value=7.9e-09 Score=122.56 Aligned_cols=170 Identities=25% Similarity=0.250 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
....+.....++...++++++..++.++... ...+.....+..+|.++...|++++|+.++++|+..
T Consensus 109 ~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~------- 175 (280)
T PF13429_consen 109 DPRYLLSALQLYYRLGDYDEAEELLEKLEEL------PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL------- 175 (280)
T ss_dssp ---------H-HHHTT-HHHHHHHHHHHHH-------T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------
T ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------
Confidence 3445566677889999999999999997743 123456778999999999999999999999999998
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
.|+...+...|+.++...|+++++...+....... +.+|. .+..+|.+|..+|++++|+.+|++++...
T Consensus 176 -~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~---~~~~la~~~~~lg~~~~Al~~~~~~~~~~-- 244 (280)
T PF13429_consen 176 -DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPD---LWDALAAAYLQLGRYEEALEYLEKALKLN-- 244 (280)
T ss_dssp --TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCC---HCHHHHHHHHHHT-HHHHHHHHHHHHHHS--
T ss_pred -CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHH---HHHHHHHHhcccccccccccccccccccc--
Confidence 46666778889999999999999877777765553 23333 45678999999999999999999998752
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 1024 LLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1024 ~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
+.....+..+|.++...|+.++|..++++++...
T Consensus 245 ------p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 245 ------PDDPLWLLAYADALEQAGRKDEALRLRRQALRLL 278 (280)
T ss_dssp ------TT-HHHHHHHHHHHT-------------------
T ss_pred ------cccccccccccccccccccccccccccccccccc
Confidence 3444567788999999999999999999988754
No 61
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.89 E-value=7.1e-08 Score=126.75 Aligned_cols=165 Identities=13% Similarity=-0.002 Sum_probs=142.8
Q ss_pred HHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 000230 870 ESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 949 (1822)
Q Consensus 870 ~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta 949 (1822)
.+-.+.-..|....+.+.+-+++.+.+. .+....++.+||.+...+|.+++|+.+++.++++ .|+..
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~ 120 (694)
T PRK15179 54 QARQVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSS 120 (694)
T ss_pred HHHHHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcH
Confidence 3445555666666676667777766554 4566889999999999999999999999999998 48889
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCc
Q 000230 950 KSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADH 1029 (1822)
Q Consensus 950 ~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dh 1029 (1822)
.+..++|.++.+++++++|+..+++++.. .|+.+..++.+|.++.++|+|++|+.+|++++.. +
T Consensus 121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~ 184 (694)
T PRK15179 121 EAFILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------H 184 (694)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------C
Confidence 99999999999999999999999999986 4778889999999999999999999999999872 4
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 1030 IQTAASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1030 p~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
++.+.++..+|.++..+|+.++|...|++|++.+
T Consensus 185 p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 185 PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5667788999999999999999999999999853
No 62
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.88 E-value=2e-07 Score=113.74 Aligned_cols=173 Identities=17% Similarity=0.127 Sum_probs=138.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
..+..+..+..+...|++++|+.++++++.. +|....++.. +..+..+|++..+...+.+++.. ...
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~ 108 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDD--------YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAP 108 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCc
Confidence 3455667788999999999999999999986 4444455554 77777777777776666666654 346
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
.++.....+..+|.++..+|++++|+.++++++.+. |.....+..+|.+|...|++++|+.++++++.....
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 788888999999999999999999999999999873 444667889999999999999999999999987421
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 1024 LLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1024 ~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
........+..+|.++..+|++++|+.++++++.
T Consensus 181 ----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 181 ----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred ----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 1222345677899999999999999999999854
No 63
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.87 E-value=2.3e-08 Score=107.39 Aligned_cols=126 Identities=17% Similarity=0.122 Sum_probs=104.4
Q ss_pred HHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC
Q 000230 885 VNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH 964 (1822)
Q Consensus 885 ie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~ 964 (1822)
..+|++++++ .|.. +..+|.++..+|++++|+.+|++++.+ .|....++.++|.++..+|+
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 4578888876 3443 557899999999999999999999886 57788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 000230 965 TELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALS 1044 (1822)
Q Consensus 965 ~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~ 1044 (1822)
+++|+.+|++++.+ .|....+++++|.++..+|++++|+..|++|+.+. +++ ...+.++|.+..
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-----p~~---~~~~~~~~~~~~ 137 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-----YAD---ASWSEIRQNAQI 137 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---hHHHHHHHHHHH
Confidence 99999999999986 36667789999999999999999999999999874 333 344455555544
Q ss_pred H
Q 000230 1045 L 1045 (1822)
Q Consensus 1045 ~ 1045 (1822)
.
T Consensus 138 ~ 138 (144)
T PRK15359 138 M 138 (144)
T ss_pred H
Confidence 3
No 64
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.86 E-value=2.2e-08 Score=109.99 Aligned_cols=132 Identities=14% Similarity=0.062 Sum_probs=109.6
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Q 000230 946 PDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLL 1025 (1822)
Q Consensus 946 p~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~ 1025 (1822)
...+.+++++|.++..+|++++|+.+|++++.+. ++++..+.++.++|.+|..+|++++|+.+|++|+.+....
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~- 105 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL- 105 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Confidence 3457788999999999999999999999999873 3455677799999999999999999999999999874322
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000230 1026 GADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEY 1083 (1822)
Q Consensus 1026 G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~ 1083 (1822)
+..+...+.++.++|..+..+|+++.|+.++.+++.++++.+|.++..+.....||..
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~ 163 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKI 163 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 2234455666666676666999999999999999999999999999888777777654
No 65
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.86 E-value=1.2e-08 Score=120.90 Aligned_cols=249 Identities=21% Similarity=0.223 Sum_probs=71.9
Q ss_pred hhHHHHhHHHHh-hhcC--ChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCC
Q 000230 846 SDIISMVPVYKH-VACS--SADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGD 922 (1822)
Q Consensus 846 eDI~~alpvvK~-l~~~--s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd 922 (1822)
.++..++.+++. +... ..+...+..+|.+....++++.|+..|++.+.. .+.....+..++.+ ...++
T Consensus 22 ~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 22 GDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc--------cccccccccccccc-ccccc
Confidence 344455555532 2222 334455556777777888888888888877765 22233445556666 57788
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000230 923 FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEE 1002 (1822)
Q Consensus 923 ~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~ 1002 (1822)
+++|+.+++++.... .++ ..+..+..++...++++++..++.++.... ..+.....+..+|.++.
T Consensus 93 ~~~A~~~~~~~~~~~------~~~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~a~~~~ 157 (280)
T PF13429_consen 93 PEEALKLAEKAYERD------GDP---RYLLSALQLYYRLGDYDEAEELLEKLEELP------AAPDSARFWLALAEIYE 157 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---------T-HHHHHHHHHHHH
T ss_pred ccccccccccccccc------ccc---chhhHHHHHHHHHhHHHHHHHHHHHHHhcc------CCCCCHHHHHHHHHHHH
Confidence 888887777765432 112 234445566777888888888777765321 23344566777888888
Q ss_pred HCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHH----HHHH
Q 000230 1003 GLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRT----QDAA 1078 (1822)
Q Consensus 1003 ~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t----~~a~ 1078 (1822)
..|++++|+.+|++|++.. |....++..++.++..+|++++|...++...... +.++.. ..+.
T Consensus 158 ~~G~~~~A~~~~~~al~~~--------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 158 QLGDPDKALRDYRKALELD--------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPDLWDALAAAY 224 (280)
T ss_dssp HCCHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCCHCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHHHHHHHHHh
Confidence 8888888888888888763 3333445666777777888877666665544432 233333 2233
Q ss_pred HHHHHHHHHHHHHHHH-HHcCCCCCchhhhccccccHHHHH-HHHcCCCHHHHHHHHHHHHHHHH
Q 000230 1079 AWLEYFESKALEQQEA-ARNGTPKPDASISSKGHLSVSDLL-DYIAPDTDSKARDAQRKARAKLK 1141 (1822)
Q Consensus 1079 ~~L~~l~qqAl~~qeA-l~~g~~~p~~~~a~~~~lSv~eLl-~yi~~Gd~ekA~~~~~KAL~i~k 1141 (1822)
..|+... +|+...+. +.....++.... .+. .+...|+.++|..++++++..++
T Consensus 225 ~~lg~~~-~Al~~~~~~~~~~p~d~~~~~---------~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 225 LQLGRYE-EALEYLEKALKLNPDDPLWLL---------AYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp HHHT-HH-HHHHHHHHHHHHSTT-HHHHH---------HHHHHHT--------------------
T ss_pred ccccccc-ccccccccccccccccccccc---------ccccccccccccccccccccccccccC
Confidence 3333332 34443332 222333333221 112 35566899999999888887654
No 66
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.85 E-value=6.1e-08 Score=127.37 Aligned_cols=135 Identities=10% Similarity=0.017 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
.++..++.+|.+...+|.+++|+.+++.++++ .|+...++.++|.++.+++++++|+..+++++..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~------ 149 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG------ 149 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc------
Confidence 45788999999999999999999999999998 6888999999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
.|+.+.+++.+|.++..+|+|++|+.+|++++. .||+...++.++|.++..+|+.++|...|++|++..
T Consensus 150 --~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 150 --GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred --CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 588899999999999999999999999999987 267778889999999999999999999999999874
No 67
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=7.8e-09 Score=122.47 Aligned_cols=289 Identities=17% Similarity=0.101 Sum_probs=209.7
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
.++..+...|..++.+.+|.+|+..|..|+.+ .|+.+..|.+.+.+|+..|+|++|+-.+++.+.+
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~--------~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~------ 112 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDM--------CPDNASYYSNRAATLMMLGRFEEALGDARQSVRL------ 112 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHh--------CccchhhhchhHHHHHHHHhHhhcccchhhheec------
Confidence 45777888999999999999999999999998 4566889999999999999999999999999887
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH--------HHHHHHhcCCC--ChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRA--------LYLLHLTCGPS--HPNTAATYINVAMMEEGLGNVHVALR 1012 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rA--------L~l~~~i~G~d--hP~~a~al~nLA~iy~~lGd~eeAl~ 1012 (1822)
.+.....+..++.++..+++..+|..+|+.. +.....+.... .|....+...-+.|+.-+|++++|+.
T Consensus 113 --kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ 190 (486)
T KOG0550|consen 113 --KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQS 190 (486)
T ss_pred --CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHH
Confidence 3445556777788888888887777666521 11112221111 25556666777889999999999987
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 000230 1013 YLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQ 1092 (1822)
Q Consensus 1013 ~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~q 1092 (1822)
.--..+++ +...+.+++.-|.+++-.++.+.|+.+|++++. ++|+|.....+...+..++..-..
T Consensus 191 ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~-----ldpdh~~sk~~~~~~k~le~~k~~-- 255 (486)
T KOG0550|consen 191 EAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALR-----LDPDHQKSKSASMMPKKLEVKKER-- 255 (486)
T ss_pred HHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhc-----cChhhhhHHhHhhhHHHHHHHHhh--
Confidence 66555554 344566777789999999999999999999998 799998888777777666421100
Q ss_pred HHHHcCCCCCchhhhccccccHHHHHHHHcCCCHHHHHHHHHHHHHHHHccCCCCChhhHHHhhhhhhhCCCCchhhhhh
Q 000230 1093 EAARNGTPKPDASISSKGHLSVSDLLDYIAPDTDSKARDAQRKARAKLKGKPGQTCETVSDEYQKDEIVSPTSPVVENSS 1172 (1822)
Q Consensus 1093 eAl~~g~~~p~~~~a~~~~lSv~eLl~yi~~Gd~ekA~~~~~KAL~i~k~~lG~~Hp~ia~~~~~~~ilg~~hp~t~~~~ 1172 (1822)
| -..++.|++.+|.+.|..||.+--. +-...+-+|-|+......+
T Consensus 256 -----g-------------------N~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rL------- 300 (486)
T KOG0550|consen 256 -----G-------------------NDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRL------- 300 (486)
T ss_pred -----h-------------------hhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhccc-------
Confidence 0 1356778999999999999866332 2234445555554322222
Q ss_pred HHHHhhhhcccccccccCCCCCC-CccccccccccccccccccCccccccCCCc
Q 000230 1173 DKENKSEVHLLEPKIEKSDSGLP-DQSIMIKNDDLEQEENSDEGWQEAVPKGRS 1225 (1822)
Q Consensus 1173 ~~L~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 1225 (1822)
.--+.++.+|..+.. |..|.+++-.-++..-.-|.|++||+-=.+
T Consensus 301 --------grl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 301 --------GRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred --------CCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222456677777665 888888888888888888899998764333
No 68
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.80 E-value=3.3e-07 Score=111.83 Aligned_cols=175 Identities=18% Similarity=0.096 Sum_probs=139.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
..+..+..+|..+...|+++.|...+.++...... ...........|.+++..|++++|+.++++++..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~------ 72 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDD------ 72 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------
Confidence 45667888999999999999998888888876542 2234455667899999999999999999999876
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQ 1022 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~ 1022 (1822)
+|....++.. +..++..|++..+...+.+++.. ..+.+|.....+..+|.++..+|++++|+..+++++++.
T Consensus 73 --~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~- 144 (355)
T cd05804 73 --YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN- 144 (355)
T ss_pred --CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 3544555554 66777777776666666666554 345788888889999999999999999999999999873
Q ss_pred HhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 1023 RLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1023 ~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
+....+++.+|.+|..+|++++|+.++++++...
T Consensus 145 -------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 145 -------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred -------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence 2335678899999999999999999999998854
No 69
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.78 E-value=1.2e-07 Score=104.17 Aligned_cols=142 Identities=13% Similarity=0.043 Sum_probs=107.0
Q ss_pred CChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 000230 879 GKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 958 (1822)
Q Consensus 879 G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~i 958 (1822)
..|..+...+...+... .....+.+++++|.++..+|++++|+.+|++|+.+. .++.....++.+||.+
T Consensus 13 ~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~ 81 (168)
T CHL00033 13 KTFTIVADILLRILPTT------SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLI 81 (168)
T ss_pred cccccchhhhhHhccCC------chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHH
Confidence 34555555554443321 123467889999999999999999999999999873 3455677899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHH
Q 000230 959 YYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQT 1032 (1822)
Q Consensus 959 y~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~t 1032 (1822)
|...|++++|+.+|++++.+.... +..+..++.++.++|..+..+|+++.|+.++.+++..+++.++.++..+
T Consensus 82 ~~~~g~~~eA~~~~~~Al~~~~~~-~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 82 HTSNGEHTKALEYYFQALERNPFL-PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999999999999999873211 1123334445555555555999999999999999999999998887544
No 70
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.78 E-value=1.3e-06 Score=101.60 Aligned_cols=191 Identities=12% Similarity=0.117 Sum_probs=155.4
Q ss_pred hHHHHhHHHHhhhcCCh-----hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcC
Q 000230 847 DIISMVPVYKHVACSSA-----DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTG 921 (1822)
Q Consensus 847 DI~~alpvvK~l~~~s~-----~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lG 921 (1822)
++..++.+...+..+++ ...+++.+|+-|+..|-++.|...|....+. ....-.++..|-.+|....
T Consensus 84 EvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~tr 155 (389)
T COG2956 84 EVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATR 155 (389)
T ss_pred hHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhh
Confidence 55556666666555443 3667899999999999999999999887764 1123457889999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000230 922 DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMME 1001 (1822)
Q Consensus 922 d~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy 1001 (1822)
+|++|++..++.+.+-.+ ....+++..|..||..+....+++.|+..+.+|++. +|....+-..+|.++
T Consensus 156 eW~KAId~A~~L~k~~~q---~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~ 224 (389)
T COG2956 156 EWEKAIDVAERLVKLGGQ---TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVE 224 (389)
T ss_pred HHHHHHHHHHHHHHcCCc---cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHH
Confidence 999999998887776321 235678899999999999999999999999999876 466677778899999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 1002 EGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1002 ~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
...|+|+.|++.++.+++- ++..+..++..|..+|..+|+.++.+.++.++.+.+
T Consensus 225 ~~~g~y~~AV~~~e~v~eQ-------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 225 LAKGDYQKAVEALERVLEQ-------NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HhccchHHHHHHHHHHHHh-------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999999999999988774 455667788899999999999999999999988754
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.75 E-value=1.1e-06 Score=102.07 Aligned_cols=203 Identities=14% Similarity=0.045 Sum_probs=159.1
Q ss_pred CChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000230 861 SSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 940 (1822)
Q Consensus 861 ~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~ 940 (1822)
.+..-++.+.+|+.|...|..+.|+.+.+-.+..-.- .......++..||.-|+..|-++.|...|...++.-
T Consensus 65 d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdl----T~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~--- 137 (389)
T COG2956 65 DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDL----TFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG--- 137 (389)
T ss_pred CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC----chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch---
Confidence 4455677888999999999999999998776654111 122356788999999999999999999998877642
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 941 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 941 lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
.....++..|-.+|....+|++|++..++...+-.. +....++..|..||..+....+++.|..++.+|++.
T Consensus 138 -----efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 138 -----EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA 209 (389)
T ss_pred -----hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 223467889999999999999999998877665322 235678999999999999999999999999999986
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 000230 1021 NQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQE 1093 (1822)
Q Consensus 1021 ~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~qe 1093 (1822)
++....+-..||.++...|+|.+|++.++.+++- ++..+.+....|...+++.+..++
T Consensus 210 --------~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-------n~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 210 --------DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-------NPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred --------CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-------ChHHHHHHHHHHHHHHHHhCCHHH
Confidence 3556667778999999999999999999887774 555566666666666555554444
No 72
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.7e-07 Score=113.22 Aligned_cols=199 Identities=20% Similarity=0.190 Sum_probs=158.0
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--h
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER--E 940 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er--~ 940 (1822)
.+...+.+.+-+|+..|.|.+.+.....+++..+..-- +.-.++.++..+|..|..+++++.|+.+|+++|.-.+. +
T Consensus 255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~ra-d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ 333 (539)
T KOG0548|consen 255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRA-DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL 333 (539)
T ss_pred hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHH-HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence 33445566777888888888888777777765433211 12236777778899999999999999999999876543 1
Q ss_pred ----------c------CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000230 941 ----------L------GLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1004 (1822)
Q Consensus 941 ----------l------G~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~l 1004 (1822)
+ ..-.|..+.....-|..++..|+|..|+.+|.+|+.. .|+.+..|.|.|.||..+
T Consensus 334 ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 334 LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKL 405 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHH
Confidence 0 0124555666667799999999999999999998875 488899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000230 1005 GNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYF 1084 (1822)
Q Consensus 1005 Gd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l 1084 (1822)
|++..|+...+.++++ +|.....|..-|.++..+.+|++|++.|+++++. +|.-.++..++..+
T Consensus 406 ~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--------dp~~~e~~~~~~rc 469 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--------DPSNAEAIDGYRRC 469 (539)
T ss_pred hhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CchhHHHHHHHHHH
Confidence 9999999999998887 6778889999999999999999999999999985 57777777777766
Q ss_pred HH
Q 000230 1085 ES 1086 (1822)
Q Consensus 1085 ~q 1086 (1822)
.+
T Consensus 470 ~~ 471 (539)
T KOG0548|consen 470 VE 471 (539)
T ss_pred HH
Confidence 54
No 73
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.74 E-value=7.9e-08 Score=103.30 Aligned_cols=113 Identities=16% Similarity=0.001 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 946 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp 946 (1822)
.++.+|.++...|++++|+.+|++++.+ .|....++.++|.++..+|++++|+..|++|+.+ .|
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p 89 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DA 89 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CC
Confidence 3667899999999999999999999987 6778899999999999999999999999999987 57
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000230 947 DTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEG 1003 (1822)
Q Consensus 947 ~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~ 1003 (1822)
....+++++|.++..+|++++|+..|++++.+. |+....+.++|.+...
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--------p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--------YADASWSEIRQNAQIM 138 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHH
Confidence 778899999999999999999999999999873 4444455666655543
No 74
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.74 E-value=5.6e-07 Score=101.91 Aligned_cols=156 Identities=15% Similarity=0.135 Sum_probs=121.2
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000230 871 SSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 950 (1822)
Q Consensus 871 lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ 950 (1822)
.+..|+..|+++......++... +.+ -+...++.++++..+++++.. +|+...
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~-------~~~------------~~~~~~~~~~~i~~l~~~L~~--------~P~~~~ 74 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD-------PLH------------QFASQQTPEAQLQALQDKIRA--------NPQNSE 74 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC-------ccc------------cccCchhHHHHHHHHHHHHHH--------CCCCHH
Confidence 45678889998876544422111 111 111267778899999999887 577888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HHCCC--HHHHHHHHHHHHHHHHHhhCC
Q 000230 951 SYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMME-EGLGN--VHVALRYLHEALKCNQRLLGA 1027 (1822)
Q Consensus 951 ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy-~~lGd--~eeAl~~leeALei~~~~~G~ 1027 (1822)
.|..||.+|..+|++++|+..|++|+.+ .|+...++.++|.++ ...|+ +++|+..+++++++
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~------- 139 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALAL------- 139 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh-------
Confidence 9999999999999999999999999987 355667788999874 67787 59999999999986
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHH
Q 000230 1028 DHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLR 1073 (1822)
Q Consensus 1028 dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~ 1073 (1822)
++....++++||.++..+|++++|+.++++++++ .+++..+
T Consensus 140 -dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l----~~~~~~r 180 (198)
T PRK10370 140 -DANEVTALMLLASDAFMQADYAQAIELWQKVLDL----NSPRVNR 180 (198)
T ss_pred -CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCccH
Confidence 3455678899999999999999999999999884 4555544
No 75
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.72 E-value=2.3e-06 Score=107.36 Aligned_cols=263 Identities=11% Similarity=-0.012 Sum_probs=168.6
Q ss_pred hHHHHhHHHHhhhcC-ChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhH-HHHHHHHHHHHHHcCCHH
Q 000230 847 DIISMVPVYKHVACS-SADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMT-AGAYSLLAVVLYHTGDFN 924 (1822)
Q Consensus 847 DI~~alpvvK~l~~~-s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~-a~al~nLA~ly~~lGd~e 924 (1822)
|+..+...+...... ......++..|.++..+|+++.|..++.++.+.. |+. ..+....+.++...|+++
T Consensus 99 ~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--------p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 99 DYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--------GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CcCchHHHHHHHHHHHHCCCHH
Confidence 444444444443333 2334556677899999999999999999987652 222 123444689999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHhc------
Q 000230 925 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYL---------------LHLTC------ 983 (1822)
Q Consensus 925 eAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l---------------~~~i~------ 983 (1822)
+|+..+++.+.. +|+...++..++.+|..+|++++|++++.+.++. +...+
T Consensus 171 ~Al~~l~~l~~~--------~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 171 AARHGVDKLLEM--------APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998888876 3555577888999999999999988887766632 00000
Q ss_pred ---------CCCCh----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHH
Q 000230 984 ---------GPSHP----NTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYS 1050 (1822)
Q Consensus 984 ---------G~dhP----~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~e 1050 (1822)
-...| .....+..+|..+...|++++|+..++++++.. +++...... ......+...++..
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~~-~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISLP-LCLPIPRLKPEDNE 316 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchhH-HHHHhhhcCCCChH
Confidence 00122 245667788889999999999999999988863 232221101 11222333457778
Q ss_pred HHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHH---HHHHHHHHHHcCCCCCchhhhccccccHHHHHHHHcCCC
Q 000230 1051 LSVQHEQTTLQILQAKLGSEDL--RTQDAAAWLEYFES---KALEQQEAARNGTPKPDASISSKGHLSVSDLLDYIAPDT 1125 (1822)
Q Consensus 1051 eAi~~lekAL~I~k~~LG~dhp--~t~~a~~~L~~l~q---qAl~~qeAl~~g~~~p~~~~a~~~~lSv~eLl~yi~~Gd 1125 (1822)
.++..++++++ .-|+++ ....++.|+.+-.+ +|.+..+.......+|+..... .+ ...+...|+
T Consensus 317 ~~~~~~e~~lk-----~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~----~L--a~ll~~~g~ 385 (409)
T TIGR00540 317 KLEKLIEKQAK-----NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA----MA--ADAFDQAGD 385 (409)
T ss_pred HHHHHHHHHHH-----hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH----HH--HHHHHHcCC
Confidence 88888877776 357777 77778888765533 3444444211111233322111 11 125778899
Q ss_pred HHHHHHHHHHHHHHHHc
Q 000230 1126 DSKARDAQRKARAKLKG 1142 (1822)
Q Consensus 1126 ~ekA~~~~~KAL~i~k~ 1142 (1822)
.++|..+|++++..+-.
T Consensus 386 ~~~A~~~~~~~l~~~~~ 402 (409)
T TIGR00540 386 KAEAAAMRQDSLGLMLA 402 (409)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999877655
No 76
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.71 E-value=3e-07 Score=104.08 Aligned_cols=120 Identities=17% Similarity=0.236 Sum_probs=106.4
Q ss_pred cCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000230 878 KGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 957 (1822)
Q Consensus 878 ~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~ 957 (1822)
.++.++++..+++++.. +|+....+..||.+|..+|++++|+..|++|+.+ .|+...++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 56678889999999887 6778889999999999999999999999999998 4677888999999
Q ss_pred HH-HHcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 958 FY-YRLQH--TELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 958 iy-~~lG~--~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
++ ...|+ +++|+.++++++.+ +|....+++++|.++..+|+|++|+.+|++++++.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 75 67787 59999999999987 46666789999999999999999999999999874
No 77
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.71 E-value=2.2e-06 Score=117.72 Aligned_cols=170 Identities=13% Similarity=0.026 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
+..++..+...|...|++++|+++|.+....- ..|+ ..+|+.|...|.+.|++++|.+++.+..... .|.
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G------v~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~---~gi 575 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSKN------VKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAET---HPI 575 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC------CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc---CCC
Confidence 34445555555555555555555555543320 1122 2345555555555555555555555443310 010
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
.|+ ..+|+.|...|.+.|++++|+++|++..+. +.+....+|+.+...|.+.|++++|+++|++..+.
T Consensus 576 -~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-------gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~--- 643 (1060)
T PLN03218 576 -DPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-------NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK--- 643 (1060)
T ss_pred -CCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-------CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Confidence 111 234444555555555555555555444322 11111233444445555555555555555443321
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 000230 1024 LLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTT 1059 (1822)
Q Consensus 1024 ~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekA 1059 (1822)
|- .|+ ..+|..|..+|...|++++|.+++++.
T Consensus 644 --Gv-~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM 675 (1060)
T PLN03218 644 --GV-KPD-EVFFSALVDVAGHAGDLDKAFEILQDA 675 (1060)
T ss_pred --CC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 10 111 223444444444555555554444443
No 78
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.3e-07 Score=110.33 Aligned_cols=191 Identities=19% Similarity=0.170 Sum_probs=154.6
Q ss_pred hHHHHhHHHHhhhcCCh----hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCC
Q 000230 847 DIISMVPVYKHVACSSA----DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGD 922 (1822)
Q Consensus 847 DI~~alpvvK~l~~~s~----~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd 922 (1822)
-+.++++.+..+.+... .....+.-+.++..+|++++|+..-...+.+ .+..+.++..-|.+++..++
T Consensus 147 ~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~ 218 (486)
T KOG0550|consen 147 KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDN 218 (486)
T ss_pred HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccc
Confidence 34555665555554322 2334445678999999999999887777766 56677889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhhH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHH
Q 000230 923 FNQATIYQQKALDINERELGLDHPDTM---------KSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHP-NTAA 992 (1822)
Q Consensus 923 ~eeAle~~qkAL~i~er~lG~dhp~ta---------~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP-~~a~ 992 (1822)
.+.|+.+|+++|.+ +++|.... ..+-.-|.-.+..|+|.+|.++|.+||.+- ++|. ..+.
T Consensus 219 ~~ka~~hf~qal~l-----dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id-----P~n~~~nak 288 (486)
T KOG0550|consen 219 ADKAINHFQQALRL-----DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID-----PSNKKTNAK 288 (486)
T ss_pred hHHHHHHHhhhhcc-----ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC-----ccccchhHH
Confidence 99999999999987 56665543 344555778899999999999999999873 3333 3578
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 993 TYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 993 al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
+|.|.|.+...+|+..+|+.-..+|+.+ ++....+|..-|.++..+++|++|++.|++|++.-
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~i--------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKI--------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhc--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999999999999988 46678899999999999999999999999999864
No 79
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.69 E-value=4.7e-07 Score=105.71 Aligned_cols=199 Identities=15% Similarity=0.117 Sum_probs=156.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CC-
Q 000230 866 RTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL-GL- 943 (1822)
Q Consensus 866 ~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~l-G~- 943 (1822)
.....+|+++...+.|++++++|+.|+.+....- |.-.-..++-.||.++..+.|+++|+.+..+|+++.+.+- +.
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~--D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~ 200 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNND--DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDW 200 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC--CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCch
Confidence 4456689999999999999999999999987652 2233457788999999999999999999999999977642 22
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
..-....+++.|+..|..+|+.-+|.++.++|.++..... +.+..+.++.-+|.+|..+|+.+.|..-|++|+.+...
T Consensus 201 ~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G--dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 201 SLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG--DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred hHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 2345678899999999999999999999999999987664 56778899999999999999999999999999998766
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHccCHHH-----HHHHHHHHHHHHHHHhCCCC
Q 000230 1024 LLGADHIQTAASYHAIAIALSLMEAYSL-----SVQHEQTTLQILQAKLGSED 1071 (1822)
Q Consensus 1024 ~~G~dhp~tA~~l~nLA~~y~~lGd~ee-----Ai~~lekAL~I~k~~LG~dh 1071 (1822)
+ .+......++.-.|.++....-..+ |+++-.+++++..+ .|..|
T Consensus 279 ~--gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~-IG~K~ 328 (518)
T KOG1941|consen 279 L--GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS-IGAKL 328 (518)
T ss_pred h--hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH-hhhhH
Confidence 5 2333444555556666654443333 88888887777543 34433
No 80
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.67 E-value=9.1e-07 Score=97.68 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=106.7
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQ 1022 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~ 1022 (1822)
..++..+.+++++|.++...|++++|+.+|++++.+. ++++..+.++.++|.++..+|++++|+.+|++++.+.
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 102 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN- 102 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3456778899999999999999999999999999874 2344556789999999999999999999999999863
Q ss_pred HhhCCCcHHHHHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000230 1023 RLLGADHIQTAASYHAIAIALSL-------MEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYF 1084 (1822)
Q Consensus 1023 ~~~G~dhp~tA~~l~nLA~~y~~-------lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l 1084 (1822)
+.....+..+|.+|.. +++++.|+.++++|++++++.+..++.++.++..|+...
T Consensus 103 -------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~ 164 (172)
T PRK02603 103 -------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKTT 164 (172)
T ss_pred -------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHhc
Confidence 3334555666666665 456889999999999999999988888888888888754
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.67 E-value=1.1e-05 Score=102.53 Aligned_cols=264 Identities=19% Similarity=0.120 Sum_probs=176.1
Q ss_pred HHhhhhhhhhccccccccCCCCCcCcHhhHHHHhHHHHhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhc
Q 000230 819 LRGLSHKVGLELVPRDYDMDSESPFRKSDIISMVPVYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSV 898 (1822)
Q Consensus 819 Lrel~~k~GLql~~r~Y~f~~a~pf~~eDI~~alpvvK~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i 898 (1822)
.|..|++.++|...+...++..+| ..++.++..|..+++++.|.++.+++|++-
T Consensus 455 eR~~~h~kslqale~av~~d~~dp-----------------------~~if~lalq~A~~R~l~sAl~~~~eaL~l~--- 508 (799)
T KOG4162|consen 455 ERDALHKKSLQALEEAVQFDPTDP-----------------------LVIFYLALQYAEQRQLTSALDYAREALALN--- 508 (799)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCc-----------------------hHHHHHHHHHHHHHhHHHHHHHHHHHHHhc---
Confidence 345566666666655555554444 457888888999999999999999999872
Q ss_pred cCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 899 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 899 ~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
.-+.+.++..||.++...+++.+|+....-|+.-+...++.. ..-..+....++.++|+..+.+.|.+
T Consensus 509 ----~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~--------~~~~~i~~~~~~~e~~l~t~~~~L~~ 576 (799)
T KOG4162|consen 509 ----RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM--------DGKIHIELTFNDREEALDTCIHKLAL 576 (799)
T ss_pred ----CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc--------hhhhhhhhhcccHHHHHHHHHHHHHH
Confidence 224567889999999999999999998888887654322111 11111222245555555555555555
Q ss_pred HHHh-----------------------------------------------------------cCCCChhH--HHHHHHH
Q 000230 979 LHLT-----------------------------------------------------------CGPSHPNT--AATYINV 997 (1822)
Q Consensus 979 ~~~i-----------------------------------------------------------~G~dhP~~--a~al~nL 997 (1822)
|+.. -|++|+.+ ...+...
T Consensus 577 we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwlla 656 (799)
T KOG4162|consen 577 WEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLA 656 (799)
T ss_pred HHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHH
Confidence 5411 11222222 2234456
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 000230 998 AMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDA 1077 (1822)
Q Consensus 998 A~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a 1077 (1822)
|..+...++.++|..++.+|-.+. +..+..|+..|.++..+|.+.+|.+.|..|+. +.|+|.....+
T Consensus 657 a~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~-----ldP~hv~s~~A 723 (799)
T KOG4162|consen 657 ADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA-----LDPDHVPSMTA 723 (799)
T ss_pred HHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh-----cCCCCcHHHHH
Confidence 677888888899999999988774 56788999999999999999999999999997 57888876665
Q ss_pred HHHHHH------HHHHHHHHHHHHHcCCCCCchhhhccccccHHHHH-HHHcCCCHHHHHHHHHHHHHHHHc
Q 000230 1078 AAWLEY------FESKALEQQEAARNGTPKPDASISSKGHLSVSDLL-DYIAPDTDSKARDAQRKARAKLKG 1142 (1822)
Q Consensus 1078 ~~~L~~------l~qqAl~~qeAl~~g~~~p~~~~a~~~~lSv~eLl-~yi~~Gd~ekA~~~~~KAL~i~k~ 1142 (1822)
+..+-. +-..+.-...+++.+...++ .|..++ .+...|+.+.|.++|.-|+++-..
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~n~e---------aW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPLNHE---------AWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCCCHH---------HHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 554321 11111122344444433332 566666 566779999999999999987544
No 82
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.67 E-value=9e-07 Score=103.45 Aligned_cols=194 Identities=14% Similarity=0.091 Sum_probs=157.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
..++++++++.+...-++.+++.|..-.+.+--.-.| ..-......||.++.-++.+++++++|++|+.+.... .
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~---~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~ 156 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG---QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--D 156 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc---cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--C
Confidence 4567888999999889999999998888775321111 1223456669999999999999999999999997543 3
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTC-GPSH-PNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~-G~dh-P~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
|...-.+++..||.++..+.++++|+-+..+|+++..... +.-| -....+++.++..|..+|++-.|.++.++|.++.
T Consensus 157 D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 157 DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4445578899999999999999999999999999987653 2222 2346778999999999999999999999999987
Q ss_pred HHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 000230 1022 QRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQ 1064 (1822)
Q Consensus 1022 ~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k 1064 (1822)
-.. .+.+..+.++.-+|.+|...|+.+.|..-|++|+.+..
T Consensus 237 l~~--Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~ 277 (518)
T KOG1941|consen 237 LQH--GDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMA 277 (518)
T ss_pred HHh--CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHh
Confidence 553 45677889999999999999999999999999998765
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.64 E-value=5.1e-06 Score=96.76 Aligned_cols=204 Identities=16% Similarity=0.067 Sum_probs=158.5
Q ss_pred hhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000230 858 VACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 937 (1822)
Q Consensus 858 l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~ 937 (1822)
+...+..-.+++..|.+|+..|+-.-|+.-+.++|++ -|+...+....|.++..+|++++|..-|++.|...
T Consensus 65 ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~ 136 (504)
T KOG0624|consen 65 VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE 136 (504)
T ss_pred HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC
Confidence 3334555677899999999999999999999999987 68899999999999999999999999999988752
Q ss_pred HHhcCC--CC------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH
Q 000230 938 ERELGL--DH------PDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 1009 (1822)
Q Consensus 938 er~lG~--dh------p~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~ee 1009 (1822)
-.. |. ++ .+-...+......++..|++..|+.+..+.|++. |..+..+...|.||...|+...
T Consensus 137 ~s~-~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--------~Wda~l~~~Rakc~i~~~e~k~ 207 (504)
T KOG0624|consen 137 PSN-GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--------PWDASLRQARAKCYIAEGEPKK 207 (504)
T ss_pred CCc-chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--------cchhHHHHHHHHHHHhcCcHHH
Confidence 100 00 00 0011223334455667799999999999998873 6677888889999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 000230 1010 ALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKAL 1089 (1822)
Q Consensus 1010 Al~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl 1089 (1822)
|+.-++.+-++. .+....++.++.+++..|+.+.++.-.+++|. |.++|..--..+..|..+.....
T Consensus 208 AI~Dlk~askLs--------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK-----ldpdHK~Cf~~YKklkKv~K~le 274 (504)
T KOG0624|consen 208 AIHDLKQASKLS--------QDNTEGHYKISQLLYTVGDAENSLKEIRECLK-----LDPDHKLCFPFYKKLKKVVKSLE 274 (504)
T ss_pred HHHHHHHHHhcc--------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc-----cCcchhhHHHHHHHHHHHHHHHH
Confidence 999998887763 23456788999999999999999999999997 68888877666666665554333
Q ss_pred HH
Q 000230 1090 EQ 1091 (1822)
Q Consensus 1090 ~~ 1091 (1822)
.+
T Consensus 275 s~ 276 (504)
T KOG0624|consen 275 SA 276 (504)
T ss_pred HH
Confidence 33
No 84
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.64 E-value=1.9e-07 Score=108.15 Aligned_cols=121 Identities=24% Similarity=0.316 Sum_probs=104.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
..|+.|-.-|.-++..++|.+|+..|.+||.+ .|..+..|.+.|.+|.++|.|+.|+..++.||.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------ 144 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------ 144 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence 45788889999999999999999999999998 6788889999999999999999999999999998
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV 1007 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~ 1007 (1822)
+|....+|..||.+|..+|+|++|++.|++||++ .|+......+|..+-..+++.
T Consensus 145 --Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 145 --DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred --ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCC
Confidence 6889999999999999999999999999999987 244444555555555544443
No 85
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.60 E-value=2.6e-06 Score=114.10 Aligned_cols=173 Identities=11% Similarity=0.070 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
.+...+..+.+.+++|+++.|+..|+++++. .|....+...++.++...|++++|+.++++++.-
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p------- 97 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA--------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS------- 97 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-------
Confidence 4557888899999999999999999999987 4444323338888888999999999999999821
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
.+.....+..+|.+|..+|+|++|+++|+++++. .|....++..++.+|...+++++|++.+++++...
T Consensus 98 -~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-- 166 (822)
T PRK14574 98 -MNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD-- 166 (822)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--
Confidence 2334455666788999999999999999999886 24445556688999999999999999999887652
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 000230 1024 LLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRT 1074 (1822)
Q Consensus 1024 ~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t 1074 (1822)
+. ...+..++.++..+++..+|+..++++++. .|+.++.
T Consensus 167 ------p~-~~~~l~layL~~~~~~~~~AL~~~ekll~~-----~P~n~e~ 205 (822)
T PRK14574 167 ------PT-VQNYMTLSYLNRATDRNYDALQASSEAVRL-----APTSEEV 205 (822)
T ss_pred ------cc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHh-----CCCCHHH
Confidence 22 222244566666677887799999999884 4555444
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.60 E-value=7.2e-07 Score=93.63 Aligned_cols=112 Identities=22% Similarity=0.187 Sum_probs=97.7
Q ss_pred HHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Q 000230 886 NYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 965 (1822)
Q Consensus 886 e~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~ 965 (1822)
+.|++++.+ +|.....+..+|.++...|++++|+.++++++.+ +|....++.++|.++..+|++
T Consensus 4 ~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~ 67 (135)
T TIGR02552 4 ATLKDLLGL--------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEY 67 (135)
T ss_pred hhHHHHHcC--------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHH
Confidence 356666665 6667788999999999999999999999999886 466778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 966 ELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 966 eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
++|+.++++++.+ +|.....++++|.+|...|++++|+.+|++++++.
T Consensus 68 ~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 68 EEAIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9999999999876 35566778999999999999999999999999874
No 87
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.60 E-value=1.7e-05 Score=109.06 Aligned_cols=252 Identities=16% Similarity=0.099 Sum_probs=170.6
Q ss_pred hHHHHhHHHHhhhc--CChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHH
Q 000230 847 DIISMVPVYKHVAC--SSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFN 924 (1822)
Q Consensus 847 DI~~alpvvK~l~~--~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~e 924 (1822)
++..++.+++.+.. ...+..++..+...|...|++++|.++|.+....... ..|+ ..+|+.|-..|...|+++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g----i~PD-~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP----IDPD-HITVGALMKACANAGQVD 596 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC----CCCc-HHHHHHHHHHHHHCCCHH
Confidence 45555555555532 2345778888999999999999999999988653111 1233 357888888999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000230 925 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1004 (1822)
Q Consensus 925 eAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~l 1004 (1822)
+|+++|++.... | -.....+|+.|...|...|++++|+.+|.+.... | -.|+ ..+|+.|...|...
T Consensus 597 eA~elf~~M~e~-----g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~ 662 (1060)
T PLN03218 597 RAKEVYQMIHEY-----N--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHA 662 (1060)
T ss_pred HHHHHHHHHHHc-----C--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhC
Confidence 999999887653 2 2334568899999999999999999999887643 1 1344 45788888999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000230 1005 GNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYF 1084 (1822)
Q Consensus 1005 Gd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l 1084 (1822)
|++++|+++|++.++. |. .....+|..|..+|...|++++|++.|++.... -+.++ ..+ ...|-..
T Consensus 663 G~~eeA~~l~~eM~k~-----G~--~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~---g~~Pd-vvt---yN~LI~g 728 (1060)
T PLN03218 663 GDLDKAFEILQDARKQ-----GI--KLGTVSYSSLMGACSNAKNWKKALELYEDIKSI---KLRPT-VST---MNALITA 728 (1060)
T ss_pred CCHHHHHHHHHHHHHc-----CC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC-HHH---HHHHHHH
Confidence 9999999999887653 21 122457888899999999999999998875431 12222 112 2222211
Q ss_pred ------HHHHHHHHHHHHcCCCCCchhhhccccccHHHHH-HHHcCCCHHHHHHHHHHHHH
Q 000230 1085 ------ESKALEQQEAARNGTPKPDASISSKGHLSVSDLL-DYIAPDTDSKARDAQRKARA 1138 (1822)
Q Consensus 1085 ------~qqAl~~qeAl~~g~~~p~~~~a~~~~lSv~eLl-~yi~~Gd~ekA~~~~~KAL~ 1138 (1822)
..+|.++.+.+....-.|+.. ++.-++ .|...|++++|..++.+.++
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd~~-------Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTI-------TYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 224455544443322334332 233333 57778999999999888754
No 88
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.59 E-value=6.2e-06 Score=103.22 Aligned_cols=233 Identities=11% Similarity=-0.037 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTA-GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 945 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a-~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dh 945 (1822)
.+...+.....+|+++.|..+|.++.+. .|+.. ......+.++...|++++|+..++++++. .
T Consensus 120 ~~llaA~aA~~~g~~~~A~~~l~~A~~~--------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~ 183 (398)
T PRK10747 120 NYLLAAEAAQQRGDEARANQHLERAAEL--------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------A 183 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------C
Confidence 3444567779999999999999999875 22221 22234489999999999999999998876 3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-------------------HH---------------hcCCCChhHH
Q 000230 946 PDTMKSYGDLAVFYYRLQHTELALKYVNRALYLL-------------------HL---------------TCGPSHPNTA 991 (1822)
Q Consensus 946 p~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~-------------------~~---------------i~G~dhP~~a 991 (1822)
|....++..++.+|...|++++|+.++.+..+.. .. .....++...
T Consensus 184 P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~ 263 (398)
T PRK10747 184 PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQV 263 (398)
T ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCH
Confidence 5566778889999999999999997776655321 00 0001122334
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCC
Q 000230 992 ATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSED 1071 (1822)
Q Consensus 992 ~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dh 1071 (1822)
.+...+|..+...|+.++|...++++++. ..++..+..+ +.+ ..++.++|+..+++.++. -|++
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l~---~~l--~~~~~~~al~~~e~~lk~-----~P~~ 327 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLLI---PRL--KTNNPEQLEKVLRQQIKQ-----HGDT 327 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHHH---hhc--cCCChHHHHHHHHHHHhh-----CCCC
Confidence 45566777788888888888888777762 2234332222 221 337777777777766652 3555
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHcCCCCCchhhhccccccHHHH-HHHHcCCCHHHHHHHHHHHHHHH
Q 000230 1072 LRTQDAAAWLEYFES---KALEQQEAARNGTPKPDASISSKGHLSVSDL-LDYIAPDTDSKARDAQRKARAKL 1140 (1822)
Q Consensus 1072 p~t~~a~~~L~~l~q---qAl~~qeAl~~g~~~p~~~~a~~~~lSv~eL-l~yi~~Gd~ekA~~~~~KAL~i~ 1140 (1822)
+...-++..+..-.+ +|.+..++.... .|+.. .+..+ ..+...|+.++|..+|++++.+.
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~-------~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAY-------DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 555555555443322 333333322111 12221 11111 24666788888888888887654
No 89
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.58 E-value=1.2e-06 Score=94.35 Aligned_cols=102 Identities=15% Similarity=0.026 Sum_probs=93.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000230 904 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTC 983 (1822)
Q Consensus 904 p~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~ 983 (1822)
++....++.+|..++..|++++|..+|+-...+ +|.....+++||.++..+|+|.+|+..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 678889999999999999999999999998887 5788999999999999999999999999999876
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 984 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 984 G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
.|+....+.++|.+|...|+.+.|++.|+.|+.++
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 24445678999999999999999999999999987
No 90
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.58 E-value=1.2e-06 Score=100.14 Aligned_cols=171 Identities=16% Similarity=0.107 Sum_probs=138.5
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000230 854 VYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 933 (1822)
Q Consensus 854 vvK~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkA 933 (1822)
++......+.+... ..++..+...|+-+.+..+..+++.. |+.-...+..+|......|+|.+|+..+++|
T Consensus 56 l~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 56 LGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred HHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34444555556666 78889999999999998888886543 4444455566999999999999999999999
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000230 934 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 1013 (1822)
Q Consensus 934 L~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~ 1013 (1822)
..+ .|.....|+.+|.+|-+.|++++|..-|.+++++. +.-...++|||+.|.-.|+++.|..+
T Consensus 127 ~~l--------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~l 190 (257)
T COG5010 127 ARL--------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETL 190 (257)
T ss_pred hcc--------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHH
Confidence 987 47778899999999999999999999999999985 33345689999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 000230 1014 LHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQ 1057 (1822)
Q Consensus 1014 leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~le 1057 (1822)
+..+... +.. -..+.+||+.+...+|++++|.....
T Consensus 191 ll~a~l~-----~~a---d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 191 LLPAYLS-----PAA---DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HHHHHhC-----CCC---chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9887643 222 23567899999999999999977654
No 91
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.57 E-value=1.7e-06 Score=95.57 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=93.9
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000230 902 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHL 981 (1822)
Q Consensus 902 dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~ 981 (1822)
.++..+.+++++|.+|...|++++|+.+|++++.+. .+++....++.+||.++..+|++++|+.+|++++.+
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 101 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--- 101 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 456778899999999999999999999999999874 334456788999999999999999999999999986
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHhhCCCcHH
Q 000230 982 TCGPSHPNTAATYINVAMMEEGLGN-------VHVALRYLHEALKCNQRLLGADHIQ 1031 (1822)
Q Consensus 982 i~G~dhP~~a~al~nLA~iy~~lGd-------~eeAl~~leeALei~~~~~G~dhp~ 1031 (1822)
+|.....+.++|.+|..+|+ ++.|+.+|++|++++++....++..
T Consensus 102 -----~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 102 -----NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred -----CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 34556667778888877654 6777777777777777666544433
No 92
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.55 E-value=1.1e-05 Score=101.15 Aligned_cols=237 Identities=15% Similarity=0.055 Sum_probs=158.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
.+...+..|...+..|+|++|++...++-.. .++|.. .+...+.+...+|+++.|..++++|.+..
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~p~l--~~llaA~aA~~~g~~~~A~~~l~~A~~~~------ 148 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADH------AEQPVV--NYLLAAEAAQQRGDEARANQHLERAAELA------ 148 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------ccchHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhcC------
Confidence 4566778899999999999999777765443 122322 24445666699999999999999998752
Q ss_pred CChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-
Q 000230 944 DHPDT-MKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN- 1021 (1822)
Q Consensus 944 dhp~t-a~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~- 1021 (1822)
|+. .......+.++...|++++|+.+++++++. .++|+ .++..++.+|...|++++|+..+.+..+..
T Consensus 149 --~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~-----~P~~~---~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~ 218 (398)
T PRK10747 149 --DNDQLPVEITRVRIQLARNENHAARHGVDKLLEV-----APRHP---EVLRLAEQAYIRTGAWSSLLDILPSMAKAHV 218 (398)
T ss_pred --CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC
Confidence 222 223334589999999999999999998775 34454 556778999999999999997776655310
Q ss_pred ------------------HHhhC---------------CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhC
Q 000230 1022 ------------------QRLLG---------------ADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLG 1068 (1822)
Q Consensus 1022 ------------------~~~~G---------------~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG 1068 (1822)
..... ...+....++..+|..+...|+.++|...+++++..
T Consensus 219 ~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------ 292 (398)
T PRK10747 219 GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR------ 292 (398)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------
Confidence 00000 112223445667799999999999999999988862
Q ss_pred CCCHHHHHHHHHHH--HHHHHHHHHHHHH-HcCCCCCchhhhccccccHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 000230 1069 SEDLRTQDAAAWLE--YFESKALEQQEAA-RNGTPKPDASISSKGHLSVSDLLDYIAPDTDSKARDAQRKARAK 1139 (1822)
Q Consensus 1069 ~dhp~t~~a~~~L~--~l~qqAl~~qeAl-~~g~~~p~~~~a~~~~lSv~eLl~yi~~Gd~ekA~~~~~KAL~i 1139 (1822)
+.|+........+. ... +++...+.. +..+.++...+ ++ ...++..+++.+|+++++++++.
T Consensus 293 ~~~~~l~~l~~~l~~~~~~-~al~~~e~~lk~~P~~~~l~l------~l--grl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 293 QYDERLVLLIPRLKTNNPE-QLEKVLRQQIKQHGDTPLLWS------TL--GQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred CCCHHHHHHHhhccCCChH-HHHHHHHHHHhhCCCCHHHHH------HH--HHHHHHCCCHHHHHHHHHHHHhc
Confidence 34665554444441 112 233333333 22233332211 11 12588889999999999999875
No 93
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.55 E-value=5.7e-06 Score=106.55 Aligned_cols=184 Identities=17% Similarity=0.185 Sum_probs=150.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
..+.++..|+.++..|++++|++++.+++.. .|....+|..||.+|..+|+.++|+..+-.|-.+
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL------- 202 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL------- 202 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-------
Confidence 3566888899999999999999999999987 5677889999999999999999999998887665
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
.|..-..|..++.....+|++++|.-||.+|+.+ .|.....+...+.+|.+.|++..|...|.+++...-
T Consensus 203 -~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p- 272 (895)
T KOG2076|consen 203 -NPKDYELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP- 272 (895)
T ss_pred -CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-
Confidence 3444477899999999999999999999999987 355577788999999999999999999999988742
Q ss_pred hhCCCcH-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 000230 1024 LLGADHI-QTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQ 1075 (1822)
Q Consensus 1024 ~~G~dhp-~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~ 1075 (1822)
+.+. .........+..+...++.+.|++.+..++..-....+..+.++.
T Consensus 273 ---~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ 322 (895)
T KOG2076|consen 273 ---PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNIL 322 (895)
T ss_pred ---chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHH
Confidence 2222 233344556888889999999999999999866555555544443
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2e-06 Score=105.77 Aligned_cols=181 Identities=18% Similarity=0.169 Sum_probs=145.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
.+...-++|+..+...++..|++.|..++.+. .....+++.|.+|+.+|.+.+.+..+.+|++.-.... .
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-a 292 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-A 292 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-H
Confidence 45667789999999999999999999999983 3455678999999999999999999999887654321 1
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--h----------cC------CCChhHHHHHHHHHHHHHHCC
Q 000230 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHL--T----------CG------PSHPNTAATYINVAMMEEGLG 1005 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~--i----------~G------~dhP~~a~al~nLA~iy~~lG 1005 (1822)
+.-.++.++..+|..|..+++++.|+.+|+++|.-.+. + .+ --.|..+.-...-|..+...|
T Consensus 293 d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 293 DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc
Confidence 22346777888999999999999999999999875443 0 00 014555666667788899999
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1006 NVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1006 d~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
+|..|+.+|.+|+.. .|..+..|.|.|.+|..+|.+..|+.-++.++++
T Consensus 373 dy~~Av~~YteAIkr--------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKR--------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred CHHHHHHHHHHHHhc--------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999998875 3777889999999999999999999999888885
No 95
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=8.2e-06 Score=97.09 Aligned_cols=171 Identities=16% Similarity=0.109 Sum_probs=141.4
Q ss_pred ChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000230 862 SADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 941 (1822)
Q Consensus 862 s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~l 941 (1822)
......+..+|.+++..|++++|+..|++++.+ +|.+...+...|.++...|++++-..+-...+.+.
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---- 296 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV---- 296 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh----
Confidence 344567888999999999999999999999876 78889999999999999999988766655555542
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 942 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 942 G~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
..++.-+.--+..++...+++.|+.+.+++++.- +....+|..-|.++..+|+.++|+-.|+.|..+.
T Consensus 297 ----~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--------~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 297 ----KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--------PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred ----hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--------cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 2345556667778888999999999999998763 3344567788999999999999999999998874
Q ss_pred HHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 000230 1022 QRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQ 1064 (1822)
Q Consensus 1022 ~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k 1064 (1822)
|....+|.-|-.+|...|.+++|....+.++..+.
T Consensus 365 --------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~ 399 (564)
T KOG1174|consen 365 --------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ 399 (564)
T ss_pred --------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh
Confidence 56678899899999999999999999998888653
No 96
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.53 E-value=6.8e-06 Score=93.49 Aligned_cols=170 Identities=16% Similarity=0.216 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
.+..++..|..++..|+|.+|+..|++.+..+ +.++....++..+|.+++..|+|.+|+..+++-+..+ +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 46789999999999999999999999998874 4577888999999999999999999999999998875 6
Q ss_pred CChhhHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHhcCCCChh--------------HHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQ-----------HTELALKYVNRALYLLHLTCGPSHPN--------------TAATYINVA 998 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG-----------~~eeAl~~~~rAL~l~~~i~G~dhP~--------------~a~al~nLA 998 (1822)
+|+....+++.+|.+++.+. ...+|+..|+..+..+ |+.+. ++.--..+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999876653 2346677776666543 22221 233345678
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHH
Q 000230 999 MMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSV 1053 (1822)
Q Consensus 999 ~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi 1053 (1822)
..|...|.|..|+..++.+++.+ ++.+..-.++..|+.+|..+|..+.|.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 89999999999999999998875 667778889999999999999988553
No 97
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.53 E-value=4.5e-06 Score=104.78 Aligned_cols=238 Identities=15% Similarity=0.042 Sum_probs=159.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
.+......|...+..|+++.|.+.+.++.+. .+.-...+...|.++..+|+++.|..++.++.+..
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~------ 148 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA------ 148 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------
Confidence 4566778899999999999999999888765 23444566788999999999999999999987642
Q ss_pred CChhh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Q 000230 944 DHPDT-MKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKC-- 1020 (1822)
Q Consensus 944 dhp~t-a~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei-- 1020 (1822)
|+. ..+...++.++...|+++.|+..+++.++. .++|+ .++..++.+|...|++++|++++.+.++.
T Consensus 149 --p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~---~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 149 --GNDNILVEIARTRILLAQNELHAARHGVDKLLEM-----APRHK---EVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred --CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 222 223445699999999999999999888775 24454 56778999999999999999988876632
Q ss_pred -------------HHHhh---------------CCCcH----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhC
Q 000230 1021 -------------NQRLL---------------GADHI----QTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLG 1068 (1822)
Q Consensus 1021 -------------~~~~~---------------G~dhp----~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG 1068 (1822)
....+ -...+ .....+..+|..+...|++++|+..++++++..
T Consensus 219 ~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----- 293 (409)
T TIGR00540 219 FDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----- 293 (409)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----
Confidence 00000 00111 244667778999999999999999999999852
Q ss_pred CCCHHHH-HHHHHHHHH----HHHHHHHH-HHHHcCCCCCchhhhccccccHHHHH-HHHcCCCHHHHHHHHHHHH
Q 000230 1069 SEDLRTQ-DAAAWLEYF----ESKALEQQ-EAARNGTPKPDASISSKGHLSVSDLL-DYIAPDTDSKARDAQRKAR 1137 (1822)
Q Consensus 1069 ~dhp~t~-~a~~~L~~l----~qqAl~~q-eAl~~g~~~p~~~~a~~~~lSv~eLl-~yi~~Gd~ekA~~~~~KAL 1137 (1822)
+++.... ..+..+..+ ...+.... ++++..+..+...+ ++-++ .++..|++++|.++++++.
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~l-------l~sLg~l~~~~~~~~~A~~~le~a~ 362 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCI-------NRALGQLLMKHGEFIEAADAFKNVA 362 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHH-------HHHHHHHHHHcccHHHHHHHHHHhH
Confidence 3332110 011111111 11222222 23333333331111 11112 4788899999999999643
No 98
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.52 E-value=1.3e-06 Score=91.74 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=89.8
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRL 1024 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~ 1024 (1822)
+|.....+..+|.++...|++++|+.++++++.+ +|....++.++|.+|..+|++++|+.+|++++.+
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---- 80 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL---- 80 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 5667788999999999999999999999998875 3555678899999999999999999999999886
Q ss_pred hCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1025 LGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1025 ~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
++.....++.+|.+|..+|++++|+.++++++++
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2445677899999999999999999999999985
No 99
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.51 E-value=1.3e-05 Score=103.40 Aligned_cols=243 Identities=14% Similarity=0.020 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000230 866 RTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 945 (1822)
Q Consensus 866 ~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dh 945 (1822)
..+..++....++|.+.+|+-+|.+|+++ .|.....+...+.+|.++|++..|+..|++.+... ++.+
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~----p~~d 275 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD----PPVD 275 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC----Cchh
Confidence 44444555555555555555555555544 23334444455555555555555555555554432 1111
Q ss_pred hh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Q 000230 946 PD-TMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALK----- 1019 (1822)
Q Consensus 946 p~-ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALe----- 1019 (1822)
.. ........+.++...++-+.|++.++.++.. .. .......++-++.++....+++.|+.+...--.
T Consensus 276 ~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~---~~---~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~ 349 (895)
T KOG2076|consen 276 IERIEDLIRRVAHYFITHNERERAAKALEGALSK---EK---DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK 349 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh---cc---ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCC
Confidence 11 1122223344444445445555555555441 00 111122345667777777777777666543322
Q ss_pred ------------------------------HHHHhhC-------------------CC--cHHHHHHHHHHHHHHHHccC
Q 000230 1020 ------------------------------CNQRLLG-------------------AD--HIQTAASYHAIAIALSLMEA 1048 (1822)
Q Consensus 1020 ------------------------------i~~~~~G-------------------~d--hp~tA~~l~nLA~~y~~lGd 1048 (1822)
+++...+ .+ -.+....+..++.+|...|+
T Consensus 350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~ 429 (895)
T KOG2076|consen 350 DDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGK 429 (895)
T ss_pred ChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhccc
Confidence 0000000 00 11244677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhccccccHHHHHHHHcCCCHHH
Q 000230 1049 YSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASISSKGHLSVSDLLDYIAPDTDSK 1128 (1822)
Q Consensus 1049 ~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~qeAl~~g~~~p~~~~a~~~~lSv~eLl~yi~~Gd~ek 1128 (1822)
+.+|+.++-.......-..+---...+.++..|.........+.+++...+.+-+..+... + .+..+|+.++
T Consensus 430 ~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~La---s-----l~~~~g~~Ek 501 (895)
T KOG2076|consen 430 YKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLA---S-----LYQQLGNHEK 501 (895)
T ss_pred HHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHH---H-----HHHhcCCHHH
Confidence 9999999877655221111111223355555556555444444445545555555543211 2 2777788886
Q ss_pred HHHHHH
Q 000230 1129 ARDAQR 1134 (1822)
Q Consensus 1129 A~~~~~ 1134 (1822)
|.+.+.
T Consensus 502 alEtL~ 507 (895)
T KOG2076|consen 502 ALETLE 507 (895)
T ss_pred HHHHHh
Confidence 555443
No 100
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=3.4e-06 Score=100.23 Aligned_cols=181 Identities=12% Similarity=0.090 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
....|...|+.+.+.|+.++|+-.|+.|..+ -|....+|..|-.+|...|.+.+|....+.++..+
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~------ 398 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQML--------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF------ 398 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhc--------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh------
Confidence 3444555555555555555555555555544 23444555555555555555555555555555443
Q ss_pred CChhhHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLA-VFYYR-LQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 944 dhp~ta~ay~nLA-~iy~~-lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
+..+.++..+| .+++. -.--++|.++++++|.+ .|....+-+.+|.++...|.+..++.+++++|..+
T Consensus 399 --~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~ 468 (564)
T KOG1174|consen 399 --QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIF 468 (564)
T ss_pred --hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhc
Confidence 23344444443 22221 12234555555555554 46777788889999999999999999999999875
Q ss_pred HHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000230 1022 QRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFE 1085 (1822)
Q Consensus 1022 ~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~ 1085 (1822)
. ....+..||.++...+.+++|..+|..|+.+ +|+-..++.-|..++
T Consensus 469 ~---------D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--------dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 469 P---------DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--------DPKSKRTLRGLRLLE 515 (564)
T ss_pred c---------ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CccchHHHHHHHHHH
Confidence 2 1245778999999999999999999999985 555566666665554
No 101
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.48 E-value=2.5e-06 Score=92.01 Aligned_cols=101 Identities=12% Similarity=0.021 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
...+.++.+|..++..|++++|..+|+-...+ .|.....+++||.++..+|+|.+|+..|.+|+.+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------ 98 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI------ 98 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 34567899999999999999999999988876 6788899999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLL 979 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~ 979 (1822)
.|+....+.++|.+++..|+.+.|++.|+.|+.++
T Consensus 99 --~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 --KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 35667789999999999999999999999999987
No 102
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.47 E-value=1.2e-06 Score=107.89 Aligned_cols=96 Identities=20% Similarity=0.238 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 946 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp 946 (1822)
.|...|..++..|+|++|+++|.+|+.+ .|....+|.++|.+|..+|++++|+.++++|+.+ .|
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P 67 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DP 67 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------Cc
Confidence 4677899999999999999999999987 5667789999999999999999999999999998 46
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 947 DTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 947 ~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
....+|+++|.+|+.+|+|++|+.+|++++.+
T Consensus 68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 68 SLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 77889999999999999999999999999987
No 103
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.46 E-value=1.7e-05 Score=92.74 Aligned_cols=179 Identities=12% Similarity=0.083 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
.+..++..|..++..|+|++|++.|++.+... +..+....+...||.+|+.+++|++|+.++++.+... +
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----P 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----c
Confidence 45668899999999999999999999998864 3456677788999999999999999999999999874 7
Q ss_pred CChhhHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHh---------cCCCChhHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQ---------------H---TELALKYVNRALYLLHLT---------CGPSHPNTAATYIN 996 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG---------------~---~eeAl~~~~rAL~l~~~i---------~G~dhP~~a~al~n 996 (1822)
+|+....+++.+|.++..++ + ..+|+..|++.+..+-.. +..-.-..+.--..
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ 180 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELS 180 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999998875554 1 245666666665542100 00001122333457
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 000230 997 VAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQ 1057 (1822)
Q Consensus 997 LA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~le 1057 (1822)
+|..|.+.|.|..|+.-++.+++-+ ++.+....+++.|+.+|..+|..++|..+.+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 7888999999999999999988765 5667788899999999999999999987664
No 104
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.45 E-value=2.2e-05 Score=105.40 Aligned_cols=180 Identities=10% Similarity=0.064 Sum_probs=135.5
Q ss_pred hhHHHHhHHHHhhhcCChh-HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHH
Q 000230 846 SDIISMVPVYKHVACSSAD-GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFN 924 (1822)
Q Consensus 846 eDI~~alpvvK~l~~~s~~-A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~e 924 (1822)
+|+..++..++++...... +..+..+..++...|++++|+.++++++.- .+.....+..+|.+|..+|+|+
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p--------~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS--------MNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC--------CCCCHHHHHHHHHHHHHcCCHH
Confidence 3556677777666544333 233448888888999999999999999831 2334456666788999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000230 925 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1004 (1822)
Q Consensus 925 eAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~l 1004 (1822)
+|+++|++++.. .|....++..|+.+|...++.++|+..+++++.. .|.. ..+..++.++...
T Consensus 120 ~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--------dp~~-~~~l~layL~~~~ 182 (822)
T PRK14574 120 QALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--------DPTV-QNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--------Ccch-HHHHHHHHHHHhc
Confidence 999999999987 4555677778899999999999999999998765 2332 2234556667678
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 000230 1005 GNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQT 1058 (1822)
Q Consensus 1005 Gd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lek 1058 (1822)
+++.+|+..|+++++.. |.....+..+..++...|-...|.++.++
T Consensus 183 ~~~~~AL~~~ekll~~~--------P~n~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 183 DRNYDALQASSEAVRLA--------PTSEEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred chHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 88877999999998862 44455566777888888888888877765
No 105
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.44 E-value=2.5e-06 Score=86.76 Aligned_cols=114 Identities=11% Similarity=0.033 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCc
Q 000230 950 KSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADH 1029 (1822)
Q Consensus 950 ~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dh 1029 (1822)
.+++.+|..+...|++++|+.+|.+++... ++++....+++.+|.++...|++++|+.+|++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 568999999999999999999999998652 3555567788999999999999999999999998753 455
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000230 1030 IQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAA 1078 (1822)
Q Consensus 1030 p~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~ 1078 (1822)
+....+++.+|.++..+|++++|+.++++++.. .++++....+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~ 116 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKR-----YPGSSAAKLAQ 116 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----CcCChhHHHHH
Confidence 556778999999999999999999999999885 46666555543
No 106
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.41 E-value=1.2e-05 Score=107.75 Aligned_cols=192 Identities=13% Similarity=0.077 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 909 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHP 988 (1822)
Q Consensus 909 al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP 988 (1822)
+|+.|...|...|++++|+.+|++.... |. .|+ ..+|..+...|...|++++|.+++..+++. | .+
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~-----g~-~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-----g--~~ 357 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDS-----GV-SID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-----G--FP 357 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHh-----C--CC
Confidence 4555555555555555555555543321 11 111 234555555666666666666655555432 1 11
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhC
Q 000230 989 NTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLG 1068 (1822)
Q Consensus 989 ~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG 1068 (1822)
....+++.|..+|.+.|++++|.+.|++..+ + ...+|+.|...|...|+.++|+++|++... .-.-
T Consensus 358 ~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~---~g~~ 423 (697)
T PLN03081 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPR----------K-NLISWNALIAGYGNHGRGTKAVEMFERMIA---EGVA 423 (697)
T ss_pred CCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCC
Confidence 1233456666677777777777777665421 1 235678888889999999999998887654 2333
Q ss_pred CCCHHHHHHHHHHHH--HHHHHHHHHHHHHc-CCCCCchhhhccccccHHHHH-HHHcCCCHHHHHHHHHH
Q 000230 1069 SEDLRTQDAAAWLEY--FESKALEQQEAARN-GTPKPDASISSKGHLSVSDLL-DYIAPDTDSKARDAQRK 1135 (1822)
Q Consensus 1069 ~dhp~t~~a~~~L~~--l~qqAl~~qeAl~~-g~~~p~~~~a~~~~lSv~eLl-~yi~~Gd~ekA~~~~~K 1135 (1822)
|+.......+..+.. ...++.++.+.+.. ..-.|+.. ++.-++ .|.+.|++++|.+++++
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~-------~y~~li~~l~r~G~~~eA~~~~~~ 487 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM-------HYACMIELLGREGLLDEAYAMIRR 487 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc-------chHhHHHHHHhcCCHHHHHHHHHH
Confidence 443332222222211 12244444444432 12223321 222223 46777999999887765
No 107
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00011 Score=91.37 Aligned_cols=158 Identities=17% Similarity=0.147 Sum_probs=111.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------
Q 000230 869 LESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN----------- 937 (1822)
Q Consensus 869 ~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~----------- 937 (1822)
|+.+.|+++++..++|+..+. .++ ++.-.++..-|.+++++|+|++|+..|+..+.-.
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~-~~~----------~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~n 151 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK-GLD----------RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRAN 151 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh-ccc----------ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 677778888888888888776 211 1223456667888888888888888877652210
Q ss_pred ------------HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHH
Q 000230 938 ------------ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSH-------PNTAATYINVA 998 (1822)
Q Consensus 938 ------------er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dh-------P~~a~al~nLA 998 (1822)
.+.......++...++|.|.++...|+|.+|+++++.|+.++++.+-.+. .++..+...|+
T Consensus 152 l~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQla 231 (652)
T KOG2376|consen 152 LLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLA 231 (652)
T ss_pred HHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 01111122336678899999999999999999999999999988654321 23566788999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 000230 999 MMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAI 1041 (1822)
Q Consensus 999 ~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~ 1041 (1822)
.+|+.+|+.++|...|...+... -.|.+..|.+-+||-.
T Consensus 232 yVlQ~~Gqt~ea~~iy~~~i~~~----~~D~~~~Av~~NNLva 270 (652)
T KOG2376|consen 232 YVLQLQGQTAEASSIYVDIIKRN----PADEPSLAVAVNNLVA 270 (652)
T ss_pred HHHHHhcchHHHHHHHHHHHHhc----CCCchHHHHHhcchhh
Confidence 99999999999999998877642 2445555555555543
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.39 E-value=1.4e-05 Score=106.39 Aligned_cols=222 Identities=9% Similarity=0.024 Sum_probs=135.5
Q ss_pred CChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000230 861 SSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 940 (1822)
Q Consensus 861 ~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~ 940 (1822)
.+....++..+...+...+++++|++++.++++. +|.....|+.+|.+|+..+++.+|... +++.+.
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~--- 93 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSF--- 93 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc---
Confidence 3445677888999999999999999999988876 788889999999999999997777655 444432
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 941 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 941 lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
....++ .+.+++...+- ++++.-.++..||.||..+|++++|...|+++|++
T Consensus 94 -------------------~~~~~~-~~ve~~~~~i~--------~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~ 145 (906)
T PRK14720 94 -------------------SQNLKW-AIVEHICDKIL--------LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA 145 (906)
T ss_pred -------------------ccccch-hHHHHHHHHHH--------hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 122223 22333322211 12333346777788888888888888777777775
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH------HHHHHH
Q 000230 1021 NQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKA------LEQQEA 1094 (1822)
Q Consensus 1021 ~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqA------l~~qeA 1094 (1822)
- +..+.+++++|..|... ++++|++++.+|+..+-.. .........|..+++..- +.+++.
T Consensus 146 D--------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~----kq~~~~~e~W~k~~~~~~~d~d~f~~i~~k 212 (906)
T PRK14720 146 D--------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKK----KQYVGIEEIWSKLVHYNSDDFDFFLRIERK 212 (906)
T ss_pred C--------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhh----hcchHHHHHHHHHHhcCcccchHHHHHHHH
Confidence 2 45566777777777777 7788888887777764321 111122222333332211 112222
Q ss_pred HHcCCCCCchhhhccccccHHHHH-HHHcCCCHHHHHHHHHHHHHHHHc
Q 000230 1095 ARNGTPKPDASISSKGHLSVSDLL-DYIAPDTDSKARDAQRKARAKLKG 1142 (1822)
Q Consensus 1095 l~~g~~~p~~~~a~~~~lSv~eLl-~yi~~Gd~ekA~~~~~KAL~i~k~ 1142 (1822)
+..... .......+..+- .|....+|++++.+++.+|+.-.+
T Consensus 213 i~~~~~------~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 213 VLGHRE------FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred HHhhhc------cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 211000 011111222233 355558899999999988876444
No 109
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=0.00015 Score=89.29 Aligned_cols=192 Identities=16% Similarity=0.105 Sum_probs=113.5
Q ss_pred cCCCCCcCcHhhHHHHhHHHHhhhcC----ChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHH
Q 000230 836 DMDSESPFRKSDIISMVPVYKHVACS----SADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYS 911 (1822)
Q Consensus 836 ~f~~a~pf~~eDI~~alpvvK~l~~~----s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~ 911 (1822)
.|-..||+..+.|.++-...+.+... +.+...........+....-..+-.++-+-.. +.-..+.+
T Consensus 241 ~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~----------~~~~aa~Y 310 (484)
T COG4783 241 EYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSK----------RGGLAAQY 310 (484)
T ss_pred hHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhC----------ccchHHHH
Confidence 44456888888888877666665442 11222222222222211111122222111111 23445677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000230 912 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTA 991 (1822)
Q Consensus 912 nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a 991 (1822)
..|..++..|++++|+..++..+.- +|+....+...+.++...++..+|++.+++++.+. |...
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--------P~~~ 374 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--------PNSP 374 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------CCcc
Confidence 7777777888888887777774432 46666666677777888888888888888777652 4445
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 992 ATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 992 ~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
....++|.+|...|++.+|+..+...+.- .+.....|..||++|..+|+..+|...+.+.+.
T Consensus 375 ~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 375 LLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 56677788888888888777777665542 344445566667777777666666655544443
No 110
>PLN02789 farnesyltranstransferase
Probab=98.39 E-value=1.5e-05 Score=96.71 Aligned_cols=158 Identities=9% Similarity=0.151 Sum_probs=131.6
Q ss_pred HHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCChhhHHH
Q 000230 873 KTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERELGLDHPDTMKS 951 (1822)
Q Consensus 873 ~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lG-d~eeAle~~qkAL~i~er~lG~dhp~ta~a 951 (1822)
.++...+++++|+.++.++|.+ +|....+++..+.++..+| ++++|+.++.+++.. +|....+
T Consensus 45 a~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqa 108 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQI 108 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHH
Confidence 4566788999999999999988 7888899999999999998 689999999999986 5677788
Q ss_pred HHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCc
Q 000230 952 YGDLAVFYYRLQHT--ELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADH 1029 (1822)
Q Consensus 952 y~nLA~iy~~lG~~--eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dh 1029 (1822)
+++.+.++..+|+. ++++.++.+++.+ +|....+++..+.++..+|+|++|++++.++|++-
T Consensus 109 W~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-------- 172 (320)
T PLN02789 109 WHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-------- 172 (320)
T ss_pred hHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--------
Confidence 99999999999874 7788999888876 56777889999999999999999999999999872
Q ss_pred HHHHHHHHHHHHHHHHc---cCH----HHHHHHHHHHHHH
Q 000230 1030 IQTAASYHAIAIALSLM---EAY----SLSVQHEQTTLQI 1062 (1822)
Q Consensus 1030 p~tA~~l~nLA~~y~~l---Gd~----eeAi~~lekAL~I 1062 (1822)
+....+++..+.++..+ |.+ ++++.+..+++.+
T Consensus 173 ~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~ 212 (320)
T PLN02789 173 VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA 212 (320)
T ss_pred CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh
Confidence 34456788888887765 333 4677777777764
No 111
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.39 E-value=4.7e-06 Score=84.69 Aligned_cols=104 Identities=20% Similarity=0.164 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000230 908 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSH 987 (1822)
Q Consensus 908 ~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dh 987 (1822)
..++.+|..+..+|++++|+.+|++++.. .++++....+++.+|.++...|++++|+.+|++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 46889999999999999999999999875 24556667889999999999999999999999998763 456
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 988 PNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 988 P~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
+....++.++|.++..+|++++|+.+|+++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 6667789999999999999999999999998873
No 112
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.38 E-value=1.8e-05 Score=106.08 Aligned_cols=180 Identities=13% Similarity=0.051 Sum_probs=105.4
Q ss_pred hHHHHhHHHHhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000230 847 DIISMVPVYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQA 926 (1822)
Q Consensus 847 DI~~alpvvK~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeA 926 (1822)
++..+..+++.+.. .+..++..+...|...|++++|+++|.+.... | ..|+ ..+|..+..+|...|++++|
T Consensus 274 ~~~~A~~vf~~m~~--~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-----g-~~pd-~~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 274 DIEDARCVFDGMPE--KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-----G-VSID-QFTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred CHHHHHHHHHhCCC--CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhccchHHH
Confidence 45555566655543 35566777888888888888888888876543 1 1222 23677777778888888888
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 000230 927 TIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 1006 (1822)
Q Consensus 927 le~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd 1006 (1822)
.+.+..++.. |. +....+++.|...|...|++++|+++|++..+ ++ ..+|+.|...|...|+
T Consensus 345 ~~i~~~m~~~-----g~--~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~d-~~t~n~lI~~y~~~G~ 406 (697)
T PLN03081 345 KQAHAGLIRT-----GF--PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----------KN-LISWNALIAGYGNHGR 406 (697)
T ss_pred HHHHHHHHHh-----CC--CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------CC-eeeHHHHHHHHHHcCC
Confidence 7777766543 11 12234556666666666666666666655321 11 2345666666666666
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 000230 1007 VHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTL 1060 (1822)
Q Consensus 1007 ~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL 1060 (1822)
.++|+++|++.++. |- .|+ ..++..+-.++...|+.++|.++|+...
T Consensus 407 ~~~A~~lf~~M~~~-----g~-~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 407 GTKAVEMFERMIAE-----GV-APN-HVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHHHHHHHHHHh-----CC-CCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 66666666664432 11 111 2234444555555566555555555443
No 113
>PLN02789 farnesyltranstransferase
Probab=98.36 E-value=1.3e-05 Score=97.32 Aligned_cols=186 Identities=11% Similarity=0.060 Sum_probs=145.2
Q ss_pred CChhHHHHHHHHHHHHHcC-ChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHH
Q 000230 861 SSADGRTLLESSKTSLDKG-KLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDF--NQATIYQQKALDIN 937 (1822)
Q Consensus 861 ~s~~A~~L~~lG~~~~~~G-~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~--eeAle~~qkAL~i~ 937 (1822)
.+....++..++.++..+| ++++|+.++.+++.. +|....++++.+.++..+|+. ++++.++.+++.+
T Consensus 67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~- 137 (320)
T PLN02789 67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL- 137 (320)
T ss_pred CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh-
Confidence 4455667888899999998 689999999999986 677778899999999999874 6788899898876
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---CCH----HHH
Q 000230 938 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGL---GNV----HVA 1010 (1822)
Q Consensus 938 er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~l---Gd~----eeA 1010 (1822)
+|....++.+.+.++..+|+|++|++++.++|++ ++....+++..+.++..+ |.+ +++
T Consensus 138 -------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 138 -------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred -------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 5778899999999999999999999999999987 355567788888888776 333 467
Q ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000230 1011 LRYLHEALKCNQRLLGADHIQTAASYHAIAIALSL----MEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFES 1086 (1822)
Q Consensus 1011 l~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~----lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~q 1086 (1822)
+.|..+++.+. |....+++.++.++.. +++..+|+..+.+++. ..+....++.+|..++.
T Consensus 203 l~y~~~aI~~~--------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--------~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 203 LKYTIDAILAN--------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--------KDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHHhC--------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--------ccCCcHHHHHHHHHHHH
Confidence 88888887763 4556678888888887 4555667777776555 24445567777766654
No 114
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=3.2e-05 Score=96.07 Aligned_cols=195 Identities=14% Similarity=0.044 Sum_probs=138.7
Q ss_pred hHHHHhHHHHhhhc-CChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHH
Q 000230 847 DIISMVPVYKHVAC-SSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQ 925 (1822)
Q Consensus 847 DI~~alpvvK~l~~-~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~ee 925 (1822)
++..++..+-.+.. ...+..++...-.++++.++|++|+.+.+.-... .......+.-|.|.|+++..++
T Consensus 27 e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---------~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 27 EYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---------LVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---------hhcchhhHHHHHHHHHcccHHH
Confidence 45555444433333 2445556666667888999999998665543321 1111122678899999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------------HHh
Q 000230 926 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLL-----------------------HLT 982 (1822)
Q Consensus 926 Ale~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~-----------------------~~i 982 (1822)
|+..++ .+ .++.-.++..-|.+++++|+|++|+..|+..+.-- ...
T Consensus 98 alk~~~----~~-------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 98 ALKTLK----GL-------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HHHHHh----cc-------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 999887 21 12334456777999999999999999998774310 111
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCc-------HHHHHHHHHHHHHHHHccCHHHHHHH
Q 000230 983 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADH-------IQTAASYHAIAIALSLMEAYSLSVQH 1055 (1822)
Q Consensus 983 ~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dh-------p~tA~~l~nLA~~y~~lGd~eeAi~~ 1055 (1822)
......+....++|.|.++...|+|.+|++.++.|++++++.+-.++ .++..+..+||.++..+|+.++|...
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i 246 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI 246 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 11112235677899999999999999999999999999988775332 24678889999999999999999998
Q ss_pred HHHHHH
Q 000230 1056 EQTTLQ 1061 (1822)
Q Consensus 1056 lekAL~ 1061 (1822)
|...+.
T Consensus 247 y~~~i~ 252 (652)
T KOG2376|consen 247 YVDIIK 252 (652)
T ss_pred HHHHHH
Confidence 887665
No 115
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=3.5e-06 Score=97.99 Aligned_cols=123 Identities=20% Similarity=0.228 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000230 904 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTC 983 (1822)
Q Consensus 904 p~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~ 983 (1822)
...+.-+-+=|.-++..++|.+|+..|.+||.+ .|..+..|.|-|.+|.++|+|+.|++-++.||.+
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i----- 144 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI----- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----
Confidence 345666778888999999999999999999998 5788899999999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHH
Q 000230 984 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYS 1050 (1822)
Q Consensus 984 G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~e 1050 (1822)
+|....+|..||++|..+|+|++|++.|++||++- |.......+|..+-..++...
T Consensus 145 ---Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld--------P~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 ---DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD--------PDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ---ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC--------CCcHHHHHHHHHHHHHhcCCC
Confidence 68899999999999999999999999999999972 333344555555555544443
No 116
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.34 E-value=4.3e-06 Score=103.05 Aligned_cols=96 Identities=22% Similarity=0.229 Sum_probs=86.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000230 910 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPN 989 (1822)
Q Consensus 910 l~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~ 989 (1822)
+...|..++..|+|++|+.+|++|+.+ .|....+|.++|.+|..+|++++|+.++++|+.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 566788999999999999999999987 4667789999999999999999999999999987 355
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 990 TAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 990 ~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
...+++++|.+|..+|+|++|+.+|++++++.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 66789999999999999999999999999863
No 117
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.32 E-value=2.3e-05 Score=84.21 Aligned_cols=135 Identities=21% Similarity=0.149 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
+...+.........+++..+...+.+.+.-. +..+....+...+|.+++..|++++|...|++++... .+
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d 80 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDY-----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----PD 80 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CC
Confidence 4455666666667899999888777776642 3445567788899999999999999999999998852 34
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEAL 1018 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeAL 1018 (1822)
......+...||.++..+|+|++|+..++.. .+.+.....+..+|.+|..+|++++|+..|++||
T Consensus 81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 81 PELKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 4455678889999999999999999998552 1234455677889999999999999999999885
No 118
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.32 E-value=2.7e-05 Score=97.52 Aligned_cols=166 Identities=12% Similarity=0.141 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000230 866 RTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 945 (1822)
Q Consensus 866 ~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dh 945 (1822)
..++..+.-.+..++|..++...+..|.. +|+....+...|..+..+|+.++|..+.+.++.. +
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d 71 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------D 71 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhcccchHHHHHHHHHHhcc--------C
Confidence 34667777788899999999999999884 3444556778899999999999999999998874 3
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Q 000230 946 PDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLL 1025 (1822)
Q Consensus 946 p~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~ 1025 (1822)
+..-.+|.-+|.++....+|++|+++|+.||.+ .++...++..|+.+..++++|+.....-.+.|+..
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~---- 139 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR---- 139 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----
Confidence 444567899999999999999999999999987 35566778899999999999988777766666653
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 1026 GADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1026 G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
+..-..|..+|..+...|++..|....+.-.+..
T Consensus 140 ----~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 140 ----PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445567788999999999999999887665543
No 119
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.32 E-value=3.1e-05 Score=96.42 Aligned_cols=224 Identities=18% Similarity=0.092 Sum_probs=113.0
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000230 871 SSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 950 (1822)
Q Consensus 871 lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ 950 (1822)
.-++.+...+|++|..+|.+|... ..+.+.|+.-+.+.+.+++.++|+.+++++|..+ |+.-.
T Consensus 624 avKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~K 686 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHK 686 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHH
Confidence 334444445555555555555432 1233445555555555555555555555555543 44445
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcH
Q 000230 951 SYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHI 1030 (1822)
Q Consensus 951 ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp 1030 (1822)
.|..+|.++..+++.+.|...|...+..+ |...-.+..|+.+-...|+.-.|...|+++.-. +|
T Consensus 687 l~lmlGQi~e~~~~ie~aR~aY~~G~k~c--------P~~ipLWllLakleEk~~~~~rAR~ildrarlk--------NP 750 (913)
T KOG0495|consen 687 LWLMLGQIEEQMENIEMAREAYLQGTKKC--------PNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--------NP 750 (913)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhccccC--------CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--------CC
Confidence 55555555555555555555555444432 333334445555555555555555555554322 23
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhccc
Q 000230 1031 QTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASISSKG 1110 (1822)
Q Consensus 1031 ~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~qeAl~~g~~~p~~~~a~~~ 1110 (1822)
..+..|...-++-...|+.+.|...+-+||+-+ |..-.......||.-.-++--....|++.....|.+.+
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-----p~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVll---- 821 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQEC-----PSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLL---- 821 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CccchhHHHHHHhccCcccchHHHHHHHhccCCchhHH----
Confidence 344444444555556666666666666666532 12222222222332222222222334444344444322
Q ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q 000230 1111 HLSVSDLLDYIAPDTDSKARDAQRKARAKL 1140 (1822)
Q Consensus 1111 ~lSv~eLl~yi~~Gd~ekA~~~~~KAL~i~ 1140 (1822)
++ ...|+....+++|+++|.+|+++.
T Consensus 822 --ai--a~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 822 --AI--AKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred --HH--HHHHHHHHHHHHHHHHHHHHHccC
Confidence 11 124777889999999999998763
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.31 E-value=8.4e-06 Score=93.41 Aligned_cols=135 Identities=19% Similarity=0.171 Sum_probs=115.0
Q ss_pred hhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000230 858 VACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 937 (1822)
Q Consensus 858 l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~ 937 (1822)
......+...+..+|+..+..|+|.+|+..++++..+ .|....+++.+|.+|.+.|++++|..-|.+|+++.
T Consensus 93 ~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~ 164 (257)
T COG5010 93 AIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA 164 (257)
T ss_pred hccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc
Confidence 3344556666777999999999999999999999987 56778899999999999999999999999999984
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 000230 938 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHE 1016 (1822)
Q Consensus 938 er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~lee 1016 (1822)
+.-..+++|||..|.-.|+++.|..++.++... -+.-..+..||+.+...+|++++|.....+
T Consensus 165 --------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 165 --------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--------PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred --------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 445678899999999999999999999988653 122346689999999999999999876654
No 121
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00034 Score=79.27 Aligned_cols=240 Identities=17% Similarity=0.089 Sum_probs=163.8
Q ss_pred HHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 000230 882 EDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 961 (1822)
Q Consensus 882 eeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~ 961 (1822)
.+|.++..+.+.. +.++....+..|..-+.+|....+|++|...+.+|...++..-. -...+.+|-..|.+...
T Consensus 10 ~ea~e~~a~t~~~----wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs--lfhAAKayEqaamLake 83 (308)
T KOG1585|consen 10 SEADEMTALTLTR----WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS--LFHAAKAYEQAAMLAKE 83 (308)
T ss_pred HHHHHHHHHHhhc----cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHH
Confidence 3444444444433 23455556777888889999999999999999999988875322 23467889999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 000230 962 LQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAI 1041 (1822)
Q Consensus 962 lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~ 1041 (1822)
+..+.++..+|++|..++.+.. .|+++..-..-|--....-+.++|+++|++++.+.+. +.........+..+++
T Consensus 84 ~~klsEvvdl~eKAs~lY~E~G---spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~--~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 84 LSKLSEVVDLYEKASELYVECG---SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEE--DDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHhHHHHHHHHHHHHHHHHhC---CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHhhh
Confidence 9999999999999999998764 5666655555555556778899999999999999754 2233344566778899
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCchhhhccccccHHHHHHH
Q 000230 1042 ALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAARNG-TPKPDASISSKGHLSVSDLLDY 1120 (1822)
Q Consensus 1042 ~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~qeAl~~g-~~~p~~~~a~~~~lSv~eLl~y 1120 (1822)
+|.....|.+|-..+.+-..++...-.-..+.-+....-|-+++..-...++..... ...|.- ..+.+..++.+|+..
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f-~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAF-LKSEDSRSLENLLTA 237 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccc-cChHHHHHHHHHHHH
Confidence 999999999999888887777665544444433333334444443223333333221 111111 122223377788899
Q ss_pred HcCCCHHHHHHHH
Q 000230 1121 IAPDTDSKARDAQ 1133 (1822)
Q Consensus 1121 i~~Gd~ekA~~~~ 1133 (1822)
++.||.+......
T Consensus 238 yd~gD~E~~~kvl 250 (308)
T KOG1585|consen 238 YDEGDIEEIKKVL 250 (308)
T ss_pred hccCCHHHHHHHH
Confidence 9999998876554
No 122
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.27 E-value=0.00014 Score=93.29 Aligned_cols=178 Identities=13% Similarity=0.067 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCC
Q 000230 991 AATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSE 1070 (1822)
Q Consensus 991 a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~d 1070 (1822)
.++++.||..|...|++++|+.++++||+. .|.....|...|.+|...|++.+|...++.|..+- +..-
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD---~~DR 262 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD---LADR 262 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC---hhhH
Confidence 678899999999999999999999999986 35667789999999999999999999999987741 1111
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH---c-CCCCCchhhhcccc-ccHHHH---HHHHcCCCHHHHHHHHHHHHHHHHc
Q 000230 1071 DLRTQDAAAWLEYFESKALEQQEAAR---N-GTPKPDASISSKGH-LSVSDL---LDYIAPDTDSKARDAQRKARAKLKG 1142 (1822)
Q Consensus 1071 hp~t~~a~~~L~~l~qqAl~~qeAl~---~-g~~~p~~~~a~~~~-lSv~eL---l~yi~~Gd~ekA~~~~~KAL~i~k~ 1142 (1822)
..+++.+...| ++..+.+|.. . .....+.......+ ..|..+ ..|...|++..|+..|....+++..
T Consensus 263 yiNsK~aKy~L-----Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 263 YINSKCAKYLL-----RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred HHHHHHHHHHH-----HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 12222222222 3333333331 1 11110111000111 122222 3788999999999999999999888
Q ss_pred cCCC--C-Ch---------hhHHHhhhhhhhCCCCchhhhhhHHHHhhhhccccc
Q 000230 1143 KPGQ--T-CE---------TVSDEYQKDEIVSPTSPVVENSSDKENKSEVHLLEP 1185 (1822)
Q Consensus 1143 ~lG~--~-Hp---------~ia~~~~~~~ilg~~hp~t~~~~~~L~~~~~~~~e~ 1185 (1822)
.... | |. .+...+.... --..||-...+.....+...++.+.
T Consensus 338 ~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed-~l~~~~~y~raa~~ai~iYl~l~d~ 391 (517)
T PF12569_consen 338 FEEDQFDFHSYCLRKMTLRAYVDMLRWED-KLRSHPFYRRAAKGAIRIYLELHDK 391 (517)
T ss_pred HhcccccHHHHHHhhccHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHhcC
Confidence 6554 1 21 1111111111 2346777777666666665555543
No 123
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.27 E-value=4.3e-05 Score=82.12 Aligned_cols=123 Identities=17% Similarity=0.071 Sum_probs=98.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000230 919 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVA 998 (1822)
Q Consensus 919 ~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA 998 (1822)
..+++..+...+++.+.- .++.+....+.+.+|.+++..|++++|+..|+.++... ++......+...||
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHH
Confidence 577888877766665553 24456668889999999999999999999999998742 23344456788999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 000230 999 MMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTL 1060 (1822)
Q Consensus 999 ~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL 1060 (1822)
.++..+|+|++|+..++.. .........+..+|.+|..+|++++|+..|++|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999998652 2334556678889999999999999999999875
No 124
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.18 E-value=3.1e-05 Score=80.80 Aligned_cols=102 Identities=28% Similarity=0.242 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000230 908 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSH 987 (1822)
Q Consensus 908 ~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dh 987 (1822)
.+++.+|.++-.+|+.++|+.+|++|+.. |.+.+....++..||..|..+|++++|+.++++++.-. ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46789999999999999999999999884 66777788899999999999999999999999987532 222
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000230 988 PNTAATYINVAMMEEGLGNVHVALRYLHEALK 1019 (1822)
Q Consensus 988 P~~a~al~nLA~iy~~lGd~eeAl~~leeALe 1019 (1822)
+........+++++...|++++|+.++..++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22555667789999999999999999987764
No 125
>PLN03077 Protein ECB2; Provisional
Probab=98.17 E-value=0.00033 Score=96.31 Aligned_cols=222 Identities=11% Similarity=0.033 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 946 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp 946 (1822)
++..+-..+...|++++|.+++..++.. | ......+++.|...|.+.|++++|.+.|++... +
T Consensus 391 t~~~ll~a~~~~g~~~~a~~l~~~~~~~-----g--~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~ 453 (857)
T PLN03077 391 TIASVLSACACLGDLDVGVKLHELAERK-----G--LISYVVVANALIEMYSKCKCIDKALEVFHNIPE----------K 453 (857)
T ss_pred eHHHHHHHHhccchHHHHHHHHHHHHHh-----C--CCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----------C
Confidence 3333334444555555555555544432 1 111234566667777777777777776655311 1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH----------------------------------
Q 000230 947 DTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAA---------------------------------- 992 (1822)
Q Consensus 947 ~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~---------------------------------- 992 (1822)
...+|+.|...|...|++++|+.+|++.+.. . .|+...
T Consensus 454 -d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~----~---~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 454 -DVISWTSIIAGLRLNNRCFEALIFFRQMLLT----L---KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred -CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC----C---CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 1346777777788888888888888876531 1 122111
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCH
Q 000230 993 TYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDL 1072 (1822)
Q Consensus 993 al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp 1072 (1822)
+++.|-.+|.+.|++++|...|++. .....+|..|...|...|+.++|+.+|++..+ .-+.|+..
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~------------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~---~g~~Pd~~ 590 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH------------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE---SGVNPDEV 590 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc------------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCcc
Confidence 1123335666667766666666542 11245688889999999999999999987654 23445554
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHH-cCCCCCchhhhccccccHHHHH-HHHcCCCHHHHHHHHHH
Q 000230 1073 RTQDAAAWLE--YFESKALEQQEAAR-NGTPKPDASISSKGHLSVSDLL-DYIAPDTDSKARDAQRK 1135 (1822)
Q Consensus 1073 ~t~~a~~~L~--~l~qqAl~~qeAl~-~g~~~p~~~~a~~~~lSv~eLl-~yi~~Gd~ekA~~~~~K 1135 (1822)
.....+..+. -...++.++.+.+. ...-.|+.. ++.-++ .|.+.|++++|.+++++
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~-------~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK-------HYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchH-------HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4333333222 11234555555553 222233322 122223 57778999999888776
No 126
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.13 E-value=2.8e-05 Score=99.99 Aligned_cols=139 Identities=17% Similarity=0.074 Sum_probs=108.2
Q ss_pred cCChhHHHHHHHHHHHHHcCC---hHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHH--------HHHH
Q 000230 860 CSSADGRTLLESSKTSLDKGK---LEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFN--------QATI 928 (1822)
Q Consensus 860 ~~s~~A~~L~~lG~~~~~~G~---yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~e--------eAle 928 (1822)
+....+..++..|..++..+. +..|+.+|++|+++ .|+.+.++..|+.+|.....+. .|..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~ 405 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALST 405 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 345578888999998887766 88999999999998 7888888888888886653332 2223
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000230 929 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 1008 (1822)
Q Consensus 929 ~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~e 1008 (1822)
..++++.+ ...+....+|..+|..+...|++++|..++++|+.+. |. +.+|..+|.++...|+++
T Consensus 406 ~~~~a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G~~~ 470 (517)
T PRK10153 406 ELDNIVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKGDNR 470 (517)
T ss_pred HHHHhhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcCCHH
Confidence 33332222 1133445788889999999999999999999999873 43 578999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 000230 1009 VALRYLHEALKCN 1021 (1822)
Q Consensus 1009 eAl~~leeALei~ 1021 (1822)
+|+.+|++|+.+.
T Consensus 471 eA~~~~~~A~~L~ 483 (517)
T PRK10153 471 LAADAYSTAFNLR 483 (517)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999863
No 127
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.13 E-value=1.5e-05 Score=74.75 Aligned_cols=96 Identities=34% Similarity=0.479 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 946 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp 946 (1822)
.++.+|..+..+|++++|+.++++++... +....++..+|.++...+++++|+.++++++.+. +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 47789999999999999999999998863 2333678899999999999999999999998863 3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 947 DTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 947 ~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
....++..+|.++...|++++|..++.+++.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 33378899999999999999999999988764
No 128
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.12 E-value=1.5e-05 Score=74.75 Aligned_cols=96 Identities=35% Similarity=0.524 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 909 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHP 988 (1822)
Q Consensus 909 al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP 988 (1822)
++..+|.++..+|++++|+.++++++... +....++..+|.++...+++++|+.++.+++.+. +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 57889999999999999999999998863 3334788999999999999999999999998763 2
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 989 NTAATYINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 989 ~~a~al~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
....++..+|.++...|+++.|..++.+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 22367889999999999999999999988764
No 129
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.11 E-value=4.8e-05 Score=79.39 Aligned_cols=102 Identities=25% Similarity=0.216 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000230 866 RTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 945 (1822)
Q Consensus 866 ~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dh 945 (1822)
+.+|++|.++-..|+.++|+.+|++++.. |...+....++..+|.+|..+|++++|+..+++++.-+ ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46889999999999999999999999985 44556677899999999999999999999999997642 222
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000230 946 PDTMKSYGDLAVFYYRLQHTELALKYVNRALY 977 (1822)
Q Consensus 946 p~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~ 977 (1822)
+........++.++...|++++|+..+..++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23556667789999999999999999877764
No 130
>PLN03077 Protein ECB2; Provisional
Probab=98.11 E-value=0.00024 Score=97.52 Aligned_cols=291 Identities=12% Similarity=0.049 Sum_probs=171.0
Q ss_pred hhHHHHhHHHHhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHH-----------------
Q 000230 846 SDIISMVPVYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAG----------------- 908 (1822)
Q Consensus 846 eDI~~alpvvK~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~----------------- 908 (1822)
+++..+..+++.+... +..++..+...|...|++++|+.+|++.+.. + .|+...
T Consensus 438 g~~~~A~~vf~~m~~~--d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~---~----~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 438 KCIDKALEVFHNIPEK--DVISWTSIIAGLRLNNRCFEALIFFRQMLLT---L----KPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred CCHHHHHHHHHhCCCC--CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC---C----CCCHhHHHHHHHHHhhhchHHHh
Confidence 3555566666665433 3446667777888888888888888887642 1 222211
Q ss_pred -----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHH
Q 000230 909 -----------------AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKY 971 (1822)
Q Consensus 909 -----------------al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~ 971 (1822)
.++.|-..|.+.|++++|...|.+. .....+|+.|...|...|+.++|+++
T Consensus 509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------------~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------------EKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------------CCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 1223345666667777776665542 12346789999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHH
Q 000230 972 VNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSL 1051 (1822)
Q Consensus 972 ~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~ee 1051 (1822)
|++.... | -.|+. .++..+-..|.+.|++++|.++|++..+. +|- .|. ...|..|..+|...|++++
T Consensus 577 f~~M~~~-----g-~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~----~gi-~P~-~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 577 FNRMVES-----G-VNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEK----YSI-TPN-LKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred HHHHHHc-----C-CCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHH----hCC-CCc-hHHHHHHHHHHHhCCCHHH
Confidence 9987643 2 12332 34556667788999999999999887643 221 222 3567888999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHH-HcCCCCCchhhhccccccHHHHH-HHHcCCCH
Q 000230 1052 SVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFES---KALEQQEAA-RNGTPKPDASISSKGHLSVSDLL-DYIAPDTD 1126 (1822)
Q Consensus 1052 Ai~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~q---qAl~~qeAl-~~g~~~p~~~~a~~~~lSv~eLl-~yi~~Gd~ 1126 (1822)
|.+++++.- ..+ +..+..++........ .+....+.+ ...+.... .+..+. .|...|+|
T Consensus 644 A~~~~~~m~------~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~---------~y~ll~n~ya~~g~~ 707 (857)
T PLN03077 644 AYNFINKMP------ITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVG---------YYILLCNLYADAGKW 707 (857)
T ss_pred HHHHHHHCC------CCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcc---------hHHHHHHHHHHCCCh
Confidence 999887631 222 2333333322211110 111111122 12221111 111112 47788999
Q ss_pred HHHHHHHHHHHHH-HHccCCCCChhhHHHhhhhhhhCCCCchhhhhhHHHHhhhhcccccc
Q 000230 1127 SKARDAQRKARAK-LKGKPGQTCETVSDEYQKDEIVSPTSPVVENSSDKENKSEVHLLEPK 1186 (1822)
Q Consensus 1127 ekA~~~~~KAL~i-~k~~lG~~Hp~ia~~~~~~~ilg~~hp~t~~~~~~L~~~~~~~~e~~ 1186 (1822)
++|....+.-.+. .++..|-.+.++.........-...||....--..|.....++.+.+
T Consensus 708 ~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 768 (857)
T PLN03077 708 DEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASG 768 (857)
T ss_pred HHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCC
Confidence 9998876654432 23344444444432222222234568888777777777766666544
No 131
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.10 E-value=0.0002 Score=81.65 Aligned_cols=143 Identities=20% Similarity=0.139 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 906 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGP 985 (1822)
Q Consensus 906 ~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~ 985 (1822)
....++..|..++..|+|.+|+..|++.+..+ +.++....+.+.+|.+++..|+|.+|+..+++.+... +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 45678999999999999999999999998874 5678889999999999999999999999999988764 6
Q ss_pred CChhHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhhCCCcHH--------------HHHHHHHHH
Q 000230 986 SHPNTAATYINVAMMEEGLG-----------NVHVALRYLHEALKCNQRLLGADHIQ--------------TAASYHAIA 1040 (1822)
Q Consensus 986 dhP~~a~al~nLA~iy~~lG-----------d~eeAl~~leeALei~~~~~G~dhp~--------------tA~~l~nLA 1040 (1822)
+|+....+++.+|.++..+. ...+|+..|+..+..+ ++++. .+.--+.+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999876543 2346677776666543 22222 233345578
Q ss_pred HHHHHccCHHHHHHHHHHHHHHH
Q 000230 1041 IALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1041 ~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
..|...|.+..|+..++..++-|
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcccHHHHHHHHHHHHHHC
Confidence 88999999999999999988854
No 132
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.07 E-value=0.00034 Score=88.70 Aligned_cols=236 Identities=17% Similarity=0.147 Sum_probs=145.0
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000230 871 SSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 950 (1822)
Q Consensus 871 lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ 950 (1822)
.|.....+|.+++|+.+|+++-. |..|-.+|..+|.|.+|.+..+. .|...+-.
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR----------------~DLlNKlyQs~g~w~eA~eiAE~----------~DRiHLr~ 859 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKR----------------YDLLNKLYQSQGMWSEAFEIAET----------KDRIHLRN 859 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH----------------HHHHHHHHHhcccHHHHHHHHhh----------ccceehhh
Confidence 34566778899999999988743 34456678888888888766543 34445667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHhcCCCChhH----------HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 000230 951 SYGDLAVFYYRLQHTELALKYVNRA----LYLLHLTCGPSHPNT----------AATYINVAMMEEGLGNVHVALRYLHE 1016 (1822)
Q Consensus 951 ay~nLA~iy~~lG~~eeAl~~~~rA----L~l~~~i~G~dhP~~----------a~al~nLA~iy~~lGd~eeAl~~lee 1016 (1822)
.|++.|..+...++.+.|++||+++ .++.+-+. ++|.. -..|...|..+...|+.+.|+.+|..
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~--e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLK--EYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHH--hChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 8999999999999999999999875 33332221 11211 13466778889999999999999998
Q ss_pred HHHHHHHh-----hCC---------CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Q 000230 1017 ALKCNQRL-----LGA---------DHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAK--LGSEDLRTQDAAAW 1080 (1822)
Q Consensus 1017 ALei~~~~-----~G~---------dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~--LG~dhp~t~~a~~~ 1080 (1822)
|-+.+..+ .|. .+-+.| +.+.||+.|...|++.+|+.+|.+|-..-..+ --++ +..+-+.+
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~A-AcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEn--d~~d~L~n 1014 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKA-ACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEN--DMKDRLAN 1014 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CHHHHHHH
Confidence 87755432 121 122334 34569999999999999999998875543221 1222 23444444
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCchhhhccccccHHHHHHHHcCCCHHHHHHHHH-----HHHHHHHccCCC
Q 000230 1081 LEYFESKALEQQEAARNGTPKPDASISSKGHLSVSDLLDYIAPDTDSKARDAQR-----KARAKLKGKPGQ 1146 (1822)
Q Consensus 1081 L~~l~qqAl~~qeAl~~g~~~p~~~~a~~~~lSv~eLl~yi~~Gd~ekA~~~~~-----KAL~i~k~~lG~ 1146 (1822)
|+.... ..++..+++.....+.. . +.++ +.|-+.|.+.+|+++-= .||++..+-+..
T Consensus 1015 lal~s~-~~d~v~aArYyEe~g~~--~---~~AV---mLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~ 1076 (1416)
T KOG3617|consen 1015 LALMSG-GSDLVSAARYYEELGGY--A---HKAV---MLYHKAGMIGKALELAFRTQQFSALDLIAKDLDA 1076 (1416)
T ss_pred HHhhcC-chhHHHHHHHHHHcchh--h---hHHH---HHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCC
Confidence 443321 11111111110000000 0 0022 45777777777777522 277777765555
No 133
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.0005 Score=77.97 Aligned_cols=189 Identities=15% Similarity=0.036 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
+..+...+..|....+|++|...+.+|..-+++.- .--..+.+|-..|++...+..+.++..+|++|..++... .
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnr--slfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~---G 105 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR--SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC---G 105 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh---C
Confidence 44566678889999999999999999997766532 223467889999999999999999999999999998764 3
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRL 1024 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~ 1024 (1822)
.|+++..-..-|.-....-+.++|+.+|++++.+.+.- .........+..++++|....+|++|-..+.+-..+....
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~ 183 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC 183 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH
Confidence 56776655555666677889999999999999998652 2223344567788999999999999998888766555444
Q ss_pred hCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1025 LGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1025 ~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
-.- +.....+..+-.+|.-..||..|...++...+|
T Consensus 184 ~~y--~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 184 DAY--NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred hhc--ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 221 222333444445666677999999999988775
No 134
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=4.4e-05 Score=92.26 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCch-------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHR-------MTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 937 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp-------~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~ 937 (1822)
|....+.|+.|++.|+|..|...|.+|+..+....+.+.. ....|+.|||.+|..+++|.+|+.++.++|.+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~- 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL- 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 4456678999999999999999999999987644333221 23468899999999999999999999999997
Q ss_pred HHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHH-HHHHHH
Q 000230 938 ERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVA-LRYLHE 1016 (1822)
Q Consensus 938 er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeA-l~~lee 1016 (1822)
.+....+++.-|.+|..+|+|+.|+..|++|+++. |..-.+...|..+-....++.+. .++|..
T Consensus 287 -------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 287 -------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--------PSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred -------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778999999999999999999999999999873 44444555566655544433322 344444
Q ss_pred HH
Q 000230 1017 AL 1018 (1822)
Q Consensus 1017 AL 1018 (1822)
.+
T Consensus 352 mF 353 (397)
T KOG0543|consen 352 MF 353 (397)
T ss_pred Hh
Confidence 43
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.04 E-value=3.9e-05 Score=102.26 Aligned_cols=133 Identities=5% Similarity=-0.079 Sum_probs=98.9
Q ss_pred cCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 899 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 899 ~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
.+...|....++..|..+|...+++++|+..++.++.. +|..+..|+.+|.+++..+++.+|... .++.+
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~ 92 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS 92 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence 34567888999999999999999999999999988876 688899999999999999997777655 44433
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 000230 979 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQT 1058 (1822)
Q Consensus 979 ~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lek 1058 (1822)
. ....++ .+.+++...+-. +...-.+++.||.||..+|++++|...|++
T Consensus 93 ~----------------------~~~~~~-~~ve~~~~~i~~--------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer 141 (906)
T PRK14720 93 F----------------------SQNLKW-AIVEHICDKILL--------YGENKLALRTLAEAYAKLNENKKLKGVWER 141 (906)
T ss_pred c----------------------ccccch-hHHHHHHHHHHh--------hhhhhHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 2 222333 333343332221 122334789999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHH
Q 000230 1059 TLQILQAKLGSEDLRTQDA 1077 (1822)
Q Consensus 1059 AL~I~k~~LG~dhp~t~~a 1077 (1822)
++++- ++++.+..-
T Consensus 142 ~L~~D-----~~n~~aLNn 155 (906)
T PRK14720 142 LVKAD-----RDNPEIVKK 155 (906)
T ss_pred HHhcC-----cccHHHHHH
Confidence 99985 666655443
No 136
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.03 E-value=5.7e-05 Score=95.82 Aligned_cols=138 Identities=13% Similarity=0.094 Sum_probs=73.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHH
Q 000230 953 GDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQT 1032 (1822)
Q Consensus 953 ~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~t 1032 (1822)
..+|......++|++|.+++++++++ .|....+++++|.+..++++++.|.++|..++.+ .|+.
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~ 552 (777)
T KOG1128|consen 489 RSLALLILSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDN 552 (777)
T ss_pred HhhccccccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCc
Confidence 34444444455555555555555554 2334445555555555555555555555555443 2334
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhccccc
Q 000230 1033 AASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASISSKGHL 1112 (1822)
Q Consensus 1033 A~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~qeAl~~g~~~p~~~~a~~~~l 1112 (1822)
+.+++||+.+|..+++..+|...+++|++. ...|..+-...
T Consensus 553 ~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-----------------------------------n~~~w~iWENy---- 593 (777)
T KOG1128|consen 553 AEAWNNLSTAYIRLKKKKRAFRKLKEALKC-----------------------------------NYQHWQIWENY---- 593 (777)
T ss_pred hhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-----------------------------------CCCCCeeeech----
Confidence 445555555555555555555555555442 22222211110
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHHccCCCCCh
Q 000230 1113 SVSDLLDYIAPDTDSKARDAQRKARAKLKGKPGQTCE 1149 (1822)
Q Consensus 1113 Sv~eLl~yi~~Gd~ekA~~~~~KAL~i~k~~lG~~Hp 1149 (1822)
++....-|.+++|+..|.+-+.+-+.-...+|+
T Consensus 594 ----mlvsvdvge~eda~~A~~rll~~~~~~~d~~vl 626 (777)
T KOG1128|consen 594 ----MLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVL 626 (777)
T ss_pred ----hhhhhhcccHHHHHHHHHHHHHhhhhcccchhh
Confidence 123455688899999988888777765544554
No 137
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.01 E-value=0.0017 Score=83.47 Aligned_cols=247 Identities=14% Similarity=0.048 Sum_probs=162.2
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
.++..+-.+...+...|+|..+.+.|++++-.. + .....|+.++..|...|.-..|+.+.++.+...+.
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~---~-----~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~--- 389 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS---F-----GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ--- 389 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh---h-----hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC---
Confidence 466677778888999999999999999998652 2 23456888999999999999999999998876431
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGL----GNVHVALRYLHEAL 1018 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~l----Gd~eeAl~~leeAL 1018 (1822)
-++....+..-..++.+.+.+++++.|..+++..+.... ......++..+|.+|..+ ....+=..+..+++
T Consensus 390 --ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~---~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 390 --PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQR---SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred --CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhh---hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 223334444455666788999999999999999774333 233456677778777543 22233333444444
Q ss_pred HHHHHh--hCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000230 1019 KCNQRL--LGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAAR 1096 (1822)
Q Consensus 1019 ei~~~~--~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~qeAl~ 1096 (1822)
+..++. +++.++ .+.+.||.-|..+++.+.|.++.++++++ -+.+++..+. .|+.+.....+...++.
T Consensus 465 qale~av~~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l----~~~~~~~~wh---LLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 465 QALEEAVQFDPTDP---LVIFYLALQYAEQRQLTSALDYAREALAL----NRGDSAKAWH---LLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHhcCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHh----cCCccHHHHH---HHHHHHhhhhhhHHHHH
Confidence 444333 234444 56788999999999999999999999984 2455554433 33333322222222221
Q ss_pred ------c--CCCCCchhhhccccccHHHHHHHHc--CCCHHHHHHHHHHHHHHHHccCCC
Q 000230 1097 ------N--GTPKPDASISSKGHLSVSDLLDYIA--PDTDSKARDAQRKARAKLKGKPGQ 1146 (1822)
Q Consensus 1097 ------~--g~~~p~~~~a~~~~lSv~eLl~yi~--~Gd~ekA~~~~~KAL~i~k~~lG~ 1146 (1822)
. +.+|.-. +.-..++ .++.++|+.....-|+.|+..+|.
T Consensus 535 vvd~al~E~~~N~~l~-----------~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~ 583 (799)
T KOG4162|consen 535 VVDAALEEFGDNHVLM-----------DGKIHIELTFNDREEALDTCIHKLALWEAEYGV 583 (799)
T ss_pred HHHHHHHHhhhhhhhc-----------hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH
Confidence 1 1111100 0012233 488999999999999999976664
No 138
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=2.9e-05 Score=98.37 Aligned_cols=169 Identities=22% Similarity=0.264 Sum_probs=134.3
Q ss_pred HHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000230 873 KTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 952 (1822)
Q Consensus 873 ~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay 952 (1822)
+.|...|++-.=-.+|++|.++.+.+ .+.+.+.+|...+..++|.+|..+++.++.+ .|....+|
T Consensus 458 ~lyc~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~w 522 (777)
T KOG1128|consen 458 RLYCLLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGTW 522 (777)
T ss_pred hhHHHhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhHH
Confidence 34444455444555566666654432 3456677788888899999999999999998 47788999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHH
Q 000230 953 GDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQT 1032 (1822)
Q Consensus 953 ~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~t 1032 (1822)
+++|.+...+++++.|.++|.+++.+ .|+.+.+++|++..|..+++-.+|...+.+|++.. .+|+.
T Consensus 523 f~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-----~~~w~- 588 (777)
T KOG1128|consen 523 FGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-----YQHWQ- 588 (777)
T ss_pred HhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-----CCCCe-
Confidence 99999999999999999999999876 47778899999999999999999999999999975 23444
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCH
Q 000230 1033 AASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDL 1072 (1822)
Q Consensus 1033 A~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp 1072 (1822)
.+.|.-.+....|.+++|+..|++-+.+.+....++++
T Consensus 589 --iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl 626 (777)
T KOG1128|consen 589 --IWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVL 626 (777)
T ss_pred --eeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhh
Confidence 35555677789999999999999999887766544443
No 139
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.00 E-value=2.3e-05 Score=72.84 Aligned_cols=65 Identities=29% Similarity=0.542 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 000230 906 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ-HTELALKYVNRALYL 978 (1822)
Q Consensus 906 ~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG-~~eeAl~~~~rAL~l 978 (1822)
.+..+..+|.+++.+|+|++|+.+|.+|+.+ +|....+++++|.+|..+| ++++|+.++++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3678999999999999999999999999998 5778889999999999999 799999999999986
No 140
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.99 E-value=0.00018 Score=89.99 Aligned_cols=209 Identities=16% Similarity=0.091 Sum_probs=158.6
Q ss_pred HHHhHHHHhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000230 849 ISMVPVYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATI 928 (1822)
Q Consensus 849 ~~alpvvK~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle 928 (1822)
..+-.++......+.-.+.++..+.....+++.++|+++++++|.. .|+.-..|..+|+++.++++.+.|..
T Consensus 635 eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--------fp~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 635 ERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--------FPDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred HHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--------CCchHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344444444445666777888888889999999999999999987 46677889999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000230 929 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 1008 (1822)
Q Consensus 929 ~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~e 1008 (1822)
.|...+..+ |..+-.+..|+.+--..|+...|...+.+++- .+|.....+...-.+.++.|+.+
T Consensus 707 aY~~G~k~c--------P~~ipLWllLakleEk~~~~~rAR~ildrarl--------kNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 707 AYLQGTKKC--------PNSIPLWLLLAKLEEKDGQLVRARSILDRARL--------KNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHhccccC--------CCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--------cCCCcchhHHHHHHHHHHcCCHH
Confidence 998877764 77788899999999999999999999998863 25666666777778888999999
Q ss_pred HHHHHHHHHHHHHHHh--------hCCCcH--------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Q 000230 1009 VALRYLHEALKCNQRL--------LGADHI--------------QTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAK 1066 (1822)
Q Consensus 1009 eAl~~leeALei~~~~--------~G~dhp--------------~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~ 1066 (1822)
.|.....+||+-|-.. +-..++ ....++..+|.++....++++|..+|.+|+.+
T Consensus 771 ~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~---- 846 (913)
T KOG0495|consen 771 QAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK---- 846 (913)
T ss_pred HHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc----
Confidence 9999999998754211 000000 01235566788888888888888888888875
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHH
Q 000230 1067 LGSEDLRTQDAAAWLEYFESKAL 1089 (1822)
Q Consensus 1067 LG~dhp~t~~a~~~L~~l~qqAl 1089 (1822)
+++..++-.|+-.++.+.+
T Consensus 847 ----d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 847 ----DPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred ----CCccchHHHHHHHHHHHhC
Confidence 5566666667666655544
No 141
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.98 E-value=2.3e-05 Score=72.88 Aligned_cols=65 Identities=25% Similarity=0.372 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDI 936 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lG-d~eeAle~~qkAL~i 936 (1822)
.+..++.+|.+++..|+|++|+.+|.+++.+ +|....++.++|.+|..+| ++.+|+.++++|+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999998 6778889999999999999 799999999999986
No 142
>PRK11906 transcriptional regulator; Provisional
Probab=97.97 E-value=0.00031 Score=86.93 Aligned_cols=185 Identities=11% Similarity=0.017 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHcCC---hHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Q 000230 867 TLLESSKTSLDKGK---LEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHT---------GDFNQATIYQQKAL 934 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~---yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~l---------Gd~eeAle~~qkAL 934 (1822)
.++..|...+.++. .+.|+.+|.+|+... +..|+.+.+|..+|.+++.. .+..+|+++.++|+
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 55677777766654 567888899998431 23788999999999998875 23446666677776
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000230 935 DINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL 1014 (1822)
Q Consensus 935 ~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~l 1014 (1822)
++ .+..+.++..+|.++...++++.|+..|++|+.+ .|+.+.+++..|.++...|+.++|++++
T Consensus 332 el--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 332 DI--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hc--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 65 4566789999999999999999999999999987 5888999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000230 1015 HEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFE 1085 (1822)
Q Consensus 1015 eeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~ 1085 (1822)
++|+++. ....+.....+-.-.+.....+.|+.+|- +..-.+.|.-+.+..-.|.+++
T Consensus 396 ~~alrLs-------P~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 453 (458)
T PRK11906 396 DKSLQLE-------PRRRKAVVIKECVDMYVPNPLKNNIKLYY------KETESESHRVIIDNILKLKQLT 453 (458)
T ss_pred HHHhccC-------chhhHHHHHHHHHHHHcCCchhhhHHHHh------hccccccchhhHHHHHHHHHHH
Confidence 9999873 11222333333332344566778887763 3334556766666655555554
No 143
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.94 E-value=0.00011 Score=86.86 Aligned_cols=117 Identities=9% Similarity=0.036 Sum_probs=95.8
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCC
Q 000230 950 KSYGDLAVFY-YRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGAD 1028 (1822)
Q Consensus 950 ~ay~nLA~iy-~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~d 1028 (1822)
...+..|..+ +..|+|++|+..|+..+..+ ++++....+++.+|.+|...|+|++|+.+|++++..+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 4556666655 56799999999999998874 4556667889999999999999999999999998875 67
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000230 1029 HIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWL 1081 (1822)
Q Consensus 1029 hp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L 1081 (1822)
++....+++.+|.+|..+|++++|+.+|++.+..| |++.....+...|
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y-----P~s~~a~~A~~rL 260 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY-----PGTDGAKQAQKRL 260 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----cCCHHHHHHHHHH
Confidence 88899999999999999999999999999988854 4555444444443
No 144
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.93 E-value=8e-05 Score=87.99 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHH-HHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 864 DGRTLLESSKTS-LDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 864 ~A~~L~~lG~~~-~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
.....|..|..+ +..|+|++|+..|+..+..+ ++++....+++.||.+|+..|+|++|+.+|++++..+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y----- 210 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY----- 210 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----
Confidence 456677777776 66899999999999999874 4455667899999999999999999999999999875
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLL 979 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~ 979 (1822)
++|+....+++.+|.++..+|++++|..+|++++..+
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 6788899999999999999999999999999988763
No 145
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.92 E-value=0.00048 Score=86.79 Aligned_cols=136 Identities=24% Similarity=0.284 Sum_probs=113.7
Q ss_pred ChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000230 862 SADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 941 (1822)
Q Consensus 862 s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~l 941 (1822)
...++++-..|-.+...|+-++|..+...++.. .+..-.||.-+|.++....+|++|+.+|+.|+.+
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~----- 104 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI----- 104 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhcc--------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc-----
Confidence 455778888899999999999999999998874 3445569999999999999999999999999997
Q ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 942 GLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 942 G~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
.++...++..|+.+..++++|+-....-.+.|++. |..-..+..+|+.+...|+|..|...+++-....
T Consensus 105 ---~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 105 ---EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred ---CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46778889999999999999998887777776653 5555678888999999999999988887665544
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.00086 Score=76.74 Aligned_cols=166 Identities=17% Similarity=0.129 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
...+-....+.+..|+.+.|..++.+....+ |..-+....-|+.+...|.|++|+++|...|+ |
T Consensus 52 w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--------d 115 (289)
T KOG3060|consen 52 WTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--------D 115 (289)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--------c
Confidence 3344446677888999999999888765543 33345566778888999999999998887664 2
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRL 1024 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~ 1024 (1822)
+|....++-.--.+...+|+.-+|++.+..-++.+ +.-..++..|+.+|...|+|++|.-+|++.+-+.
T Consensus 116 dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~--- 184 (289)
T KOG3060|consen 116 DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ--- 184 (289)
T ss_pred CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC---
Confidence 45555556555566778899999998888777664 3345678899999999999999999999988652
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHH
Q 000230 1025 LGADHIQTAASYHAIAIALSLME---AYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1025 ~G~dhp~tA~~l~nLA~~y~~lG---d~eeAi~~lekAL~I 1062 (1822)
|..-.++..||.+++-+| ++.-|..||.+|+++
T Consensus 185 -----P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 185 -----PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred -----CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 334455666777777665 667899999999986
No 147
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.91 E-value=0.00077 Score=79.00 Aligned_cols=142 Identities=18% Similarity=0.150 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 906 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGP 985 (1822)
Q Consensus 906 ~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~ 985 (1822)
....++..|..++..|+|++|+..|++.+..+ +..+....+...||.+|+.+++|++|+.++++.+... +
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----P 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----c
Confidence 45567889999999999999999999998864 4556777888999999999999999999999999874 6
Q ss_pred CChhHHHHHHHHHHHHHHCC---------------CH---HHHHHHHHHHHHHHHHhhCCCcHH--------------HH
Q 000230 986 SHPNTAATYINVAMMEEGLG---------------NV---HVALRYLHEALKCNQRLLGADHIQ--------------TA 1033 (1822)
Q Consensus 986 dhP~~a~al~nLA~iy~~lG---------------d~---eeAl~~leeALei~~~~~G~dhp~--------------tA 1033 (1822)
+||....+++.+|.++..++ +. .+|+..|++.++.+ +++.. .+
T Consensus 101 ~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 101 THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHH
Confidence 89999999999999875554 22 34556665555432 22222 22
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1034 ASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1034 ~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
.--..+|..|...|+|..|+.-++..++-
T Consensus 176 ~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~ 204 (243)
T PRK10866 176 KYELSVAEYYTKRGAYVAVVNRVEQMLRD 204 (243)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 22335667777788887777777777764
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.89 E-value=4.1e-05 Score=74.39 Aligned_cols=84 Identities=26% Similarity=0.321 Sum_probs=66.7
Q ss_pred HcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 000230 877 DKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 956 (1822)
Q Consensus 877 ~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA 956 (1822)
++|+|+.|+.+|+++++.... .+ ....+..||.+|+.+|+|++|+.++++ +.+. +........+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 478999999999999987421 12 455677799999999999999999999 4432 34466777889
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 000230 957 VFYYRLQHTELALKYVNRA 975 (1822)
Q Consensus 957 ~iy~~lG~~eeAl~~~~rA 975 (1822)
.++..+|+|++|+.+|+++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 149
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00017 Score=87.24 Aligned_cols=102 Identities=18% Similarity=0.138 Sum_probs=85.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Q 000230 953 GDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHP-------NTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLL 1025 (1822)
Q Consensus 953 ~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP-------~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~ 1025 (1822)
-.-|..|+..|+|..|...|++|+..+....+.+.. ....+++|||.+|..+++|.+|+.+..++|.+
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~----- 286 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL----- 286 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-----
Confidence 445788999999999999999999887644433321 12467999999999999999999999999987
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1026 GADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1026 G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
.+....++|.-|++|..+|+|+.|+..|++++++
T Consensus 287 ---~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 287 ---DPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred ---CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 2445678999999999999999999999999985
No 150
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.00016 Score=83.26 Aligned_cols=163 Identities=18% Similarity=0.175 Sum_probs=124.5
Q ss_pred HHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 000230 876 LDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 955 (1822)
Q Consensus 876 ~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nL 955 (1822)
+...+|.+|++++.--.+. .|.....+..||.||+...+|..|..+|.+.-.. +|.........
T Consensus 21 I~d~ry~DaI~~l~s~~Er--------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELER--------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQ 84 (459)
T ss_pred HHHhhHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHH
Confidence 5667888998887665543 5666778999999999999999999999886554 78888888888
Q ss_pred HHHHHHcCCHHHHHHHHHH----------HHHHHHHh-cCC-C----------C--hhHHHHHHHHHHHHHHCCCHHHHH
Q 000230 956 AVFYYRLQHTELALKYVNR----------ALYLLHLT-CGP-S----------H--PNTAATYINVAMMEEGLGNVHVAL 1011 (1822)
Q Consensus 956 A~iy~~lG~~eeAl~~~~r----------AL~l~~~i-~G~-d----------h--P~~a~al~nLA~iy~~lGd~eeAl 1011 (1822)
|..++..+.+.+|++.... ++++...+ +.. + - ...+...+|.|.++.+.|+|+.|+
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHH
Confidence 8888899999888865533 33332211 111 0 1 245678899999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1012 RYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1012 ~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
+-|+.|++.. | -.+. ..+++|.+++..+++..|+.+..+.++.
T Consensus 165 qkFqaAlqvs----G-yqpl---lAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 165 QKFQAALQVS----G-YQPL---LAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHHHHHHhhc----C-CCch---hHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 9999999862 3 2333 3478999999999999999999877764
No 151
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.86 E-value=0.0037 Score=80.46 Aligned_cols=145 Identities=17% Similarity=0.048 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 906 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGP 985 (1822)
Q Consensus 906 ~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~ 985 (1822)
..++++.||..|...|++++|+++..+|+.. .|.....|...|.+|-+.|++.+|.++++.|..+-
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD------ 258 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD------ 258 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC------
Confidence 4688899999999999999999999999986 47788999999999999999999999999998762
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-C-CC---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 000230 986 SHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLL-G-AD---HIQTAASYHAIAIALSLMEAYSLSVQHEQTTL 1060 (1822)
Q Consensus 986 dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~-G-~d---hp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL 1060 (1822)
..--.+-...+..+.+.|+.++|.+.+..- .+-- + .. ..+........|.+|..+|++..|+..|...+
T Consensus 259 --~~DRyiNsK~aKy~LRa~~~e~A~~~~~~F----tr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 259 --LADRYINSKCAKYLLRAGRIEEAEKTASLF----TREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred --hhhHHHHHHHHHHHHHCCCHHHHHHHHHhh----cCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 222233455677788999999998776432 1111 1 01 22444555678999999999999999999999
Q ss_pred HHHHHHhCCC
Q 000230 1061 QILQAKLGSE 1070 (1822)
Q Consensus 1061 ~I~k~~LG~d 1070 (1822)
.+|.......
T Consensus 333 k~f~~~~~DQ 342 (517)
T PF12569_consen 333 KHFDDFEEDQ 342 (517)
T ss_pred HHHHHHhccc
Confidence 9998776543
No 152
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.86 E-value=0.0057 Score=78.22 Aligned_cols=195 Identities=17% Similarity=0.117 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhc-----cCCC---------chhHHHHHHHHHHHHHHcCCHHHHHHH
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSV-----CGPY---------HRMTAGAYSLLAVVLYHTGDFNQATIY 929 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i-----~G~d---------hp~~a~al~nLA~ly~~lGd~eeAle~ 929 (1822)
+...+..-|..+-..|+.+.|+.+|..|-..+-.+ .|.. .-+. .+.+.||+.|-..|++.+|+.+
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~-AAcYhlaR~YEn~g~v~~Av~F 989 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDK-AACYHLARMYENDGDVVKAVKF 989 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccH-HHHHHHHHHhhhhHHHHHHHHH
Confidence 44555667888889999999999999886654322 2221 1122 3567899999999999999999
Q ss_pred HHHHHHHHHHh--cCCCC-----------------hhhHHHHHHHH-------HHHHHcCCHHHHHHHHHH-----HHHH
Q 000230 930 QQKALDINERE--LGLDH-----------------PDTMKSYGDLA-------VFYYRLQHTELALKYVNR-----ALYL 978 (1822)
Q Consensus 930 ~qkAL~i~er~--lG~dh-----------------p~ta~ay~nLA-------~iy~~lG~~eeAl~~~~r-----AL~l 978 (1822)
|.+|......+ ...+. ...+..|-.+| .+|++.|.+.+|+++.-+ ||++
T Consensus 990 fTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~l 1069 (1416)
T KOG3617|consen 990 FTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDL 1069 (1416)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHH
Confidence 98876543221 11111 11111111122 233444444444444322 3333
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH------HHHHHHHHHh-----------hC--C-C---cHHHHHH
Q 000230 979 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYL------HEALKCNQRL-----------LG--A-D---HIQTAAS 1035 (1822)
Q Consensus 979 ~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~l------eeALei~~~~-----------~G--~-d---hp~tA~~ 1035 (1822)
...-+.++ .....+...+..+....+|++|..++ +.||.++... .- . + -...-.+
T Consensus 1070 Ia~DLd~~--sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~v 1147 (1416)
T KOG3617|consen 1070 IAKDLDAG--SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQV 1147 (1416)
T ss_pred HHHhcCCC--CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHH
Confidence 33222221 12344667788888889999988766 4555555321 00 0 1 1234567
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 1036 YHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1036 l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
+..+|.++.++|.|..|-.-|.+|-.
T Consensus 1148 Leqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1148 LEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred HHHHHHHHHhccchHHHHHHHhhhhh
Confidence 88999999999999999999988744
No 153
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.82 E-value=0.00012 Score=71.05 Aligned_cols=84 Identities=24% Similarity=0.354 Sum_probs=65.7
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000230 919 HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVA 998 (1822)
Q Consensus 919 ~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA 998 (1822)
.+|+|+.|+.++++++..... .+ ....++.||.+|+.+|+|++|+.++++ +.+. +....+...+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 368999999999999997421 22 455677799999999999999999998 4332 23355666779
Q ss_pred HHHHHCCCHHHHHHHHHHH
Q 000230 999 MMEEGLGNVHVALRYLHEA 1017 (1822)
Q Consensus 999 ~iy~~lGd~eeAl~~leeA 1017 (1822)
.++..+|+|++|++.|++|
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 154
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.80 E-value=0.00054 Score=89.23 Aligned_cols=153 Identities=16% Similarity=0.080 Sum_probs=122.3
Q ss_pred CChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 000230 879 GKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 958 (1822)
Q Consensus 879 G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~i 958 (1822)
.+...|+..|-+++.+ .+..+.++..||..|+...|...|..+|++|.++ ++..+.+.-.++..
T Consensus 472 K~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adt 535 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADT 535 (1238)
T ss_pred hhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHH
Confidence 3477888888888887 5678889999999999999999999999999887 45667777888999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 000230 959 YYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHA 1038 (1822)
Q Consensus 959 y~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~n 1038 (1822)
|.+..+++.|.....++-+.... ......+..+|..|...+++..|+..|+.||++ +|....++..
T Consensus 536 yae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~g 601 (1238)
T KOG1127|consen 536 YAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLG 601 (1238)
T ss_pred hhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHH
Confidence 99999999998885444333211 011223344888899999999999999999876 5677788889
Q ss_pred HHHHHHHccCHHHHHHHHHHHHH
Q 000230 1039 IAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1039 LA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
||.+|...|++..|+..|.+|..
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHh
Confidence 99999999999999999988865
No 155
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.72 E-value=0.00049 Score=88.73 Aligned_cols=145 Identities=15% Similarity=0.107 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH--------HHHHHHHHHH
Q 000230 908 GAYSLLAVVLYHTGD---FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTE--------LALKYVNRAL 976 (1822)
Q Consensus 908 ~al~nLA~ly~~lGd---~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~e--------eAl~~~~rAL 976 (1822)
.-++..|.-|...++ +..|+.+|++|+++ +|+.+.+|..|+.+|.....+. .|.+...+++
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 334455555555544 77999999999998 6888888888888776543332 2223333322
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Q 000230 977 YLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHE 1056 (1822)
Q Consensus 977 ~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~l 1056 (1822)
.+ +..+....++.-+|.++...|++++|..+|++|+.+. + .+.+|..+|.++...|++++|+++|
T Consensus 412 al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------p-s~~a~~~lG~~~~~~G~~~eA~~~~ 476 (517)
T PRK10153 412 AL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------M-SWLNYVLLGKVYELKGDNRLAADAY 476 (517)
T ss_pred hc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 21 1122234667788999999999999999999999974 3 3578999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Q 000230 1057 QTTLQILQAKLGSEDLRTQDAAAWL 1081 (1822)
Q Consensus 1057 ekAL~I~k~~LG~dhp~t~~a~~~L 1081 (1822)
++|+. +.|.+|. ....++|
T Consensus 477 ~~A~~-----L~P~~pt-~~~~~~~ 495 (517)
T PRK10153 477 STAFN-----LRPGENT-LYWIENL 495 (517)
T ss_pred HHHHh-----cCCCCch-HHHHHhc
Confidence 99987 5677773 4444444
No 156
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.71 E-value=0.00083 Score=69.65 Aligned_cols=100 Identities=23% Similarity=0.205 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 946 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp 946 (1822)
.+-..|..+...|+++.|++.|.++|.+ -|..+.+|+|.|..|..+|+.++|++.+++|+++. |..-.
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~tr 112 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTR 112 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccch
Confidence 3444577888999999999999999998 57789999999999999999999999999999985 55555
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 947 DTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 947 ~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
....+|..-|.+|..+|+-+.|..-|+.|-++
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 56789999999999999999999999998776
No 157
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.70 E-value=0.00014 Score=66.94 Aligned_cols=60 Identities=23% Similarity=0.469 Sum_probs=55.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 869 LESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 936 (1822)
Q Consensus 869 ~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i 936 (1822)
+.+|..++..|+|++|+..|++++.. +|....++..+|.++..+|++++|+.+|++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999986 6889999999999999999999999999999987
No 158
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.63 E-value=0.043 Score=72.30 Aligned_cols=188 Identities=13% Similarity=-0.017 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhc-cCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 866 RTLLESSKTSLDKGKLEDAVNYGSKALSKLMSV-CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 866 ~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i-~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
+..+..+.....+++|.+|..++.++......- .+..-...+...-.-|.+....|++++|+.+.+.++...-. ..
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~---~~ 492 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE---AA 492 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc---cc
Confidence 334455777788899999999998887654431 00112234455556788889999999999999999987421 22
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRL 1024 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~ 1024 (1822)
...-+.++..+|.+..-.|++++|+.+.+++.++.+..- .......+.+..+.++..+|+ .|..-.+.+....+..
T Consensus 493 ~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~--~~~l~~~~~~~~s~il~~qGq--~~~a~~~~~~~~~~~q 568 (894)
T COG2909 493 YRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD--VYHLALWSLLQQSEILEAQGQ--VARAEQEKAFNLIREQ 568 (894)
T ss_pred chhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHH
Confidence 334567889999999999999999999999999987753 223345667778999999993 3333333333333333
Q ss_pred hCCCcH---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 1025 LGADHI---QTAASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1025 ~G~dhp---~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
+....+ ....++..+..+|. +++.+..-....+.+.
T Consensus 569 ~l~q~~~~~f~~~~r~~ll~~~~---r~~~~~~ear~~~~~~ 607 (894)
T COG2909 569 HLEQKPRHEFLVRIRAQLLRAWL---RLDLAEAEARLGIEVG 607 (894)
T ss_pred HhhhcccchhHHHHHHHHHHHHH---HHhhhhHHhhhcchhh
Confidence 332222 23333333333333 3666666666666643
No 159
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.63 E-value=0.0023 Score=83.71 Aligned_cols=141 Identities=18% Similarity=0.067 Sum_probs=113.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000230 913 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAA 992 (1822)
Q Consensus 913 LA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~ 992 (1822)
+|..|...+++..|+..++-|+.+ +|....++..||.+|.+.|+|.-|++.|.+|..+ .|....
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y 631 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--------RPLSKY 631 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--------CcHhHH
Confidence 555566666666666666666655 5677889999999999999999999999999876 366677
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCC
Q 000230 993 TYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSE 1070 (1822)
Q Consensus 993 al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~d 1070 (1822)
..+..|.+...+|.|.+|+..+...+....... .-....+.++..++..+...|=+.+|..+++++++++.-.+-..
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 788899999999999999999998887654321 12345678899999999999999999999999999987766543
No 160
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.63 E-value=0.0019 Score=67.15 Aligned_cols=124 Identities=23% Similarity=0.233 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 909 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHP 988 (1822)
Q Consensus 909 al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP 988 (1822)
.+-.-|..+...|+.+.|++.|.+|+.++ |..+.+|+|-|..+.-+|+.++|++-+.+|+++. |+.-.
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~tr 112 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTR 112 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccch
Confidence 34556778888999999999999999985 7788999999999999999999999999999985 43333
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----hhCCCcHHHHHHHHHHHHHHH
Q 000230 989 NTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR----LLGADHIQTAASYHAIAIALS 1044 (1822)
Q Consensus 989 ~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~----~~G~dhp~tA~~l~nLA~~y~ 1044 (1822)
..-.++...|.+|..+|+-+.|..-|+.|-++-.. .+-.-+|..+.+-..|+.++.
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~MLa~~f~ 172 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQMLADAFD 172 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 44567889999999999999999999998875221 111224555555555555543
No 161
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.62 E-value=0.00049 Score=82.66 Aligned_cols=177 Identities=14% Similarity=0.049 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 946 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp 946 (1822)
..+..|.++...|++++|++++.+. ....++..+-.+|..+++++.|...++++-.+ ..
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~e--- 162 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----DE--- 162 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CC---
Confidence 3455678888899999998887664 12345666778999999999999888775433 22
Q ss_pred hhHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000230 947 DTMKSYGDLAVFYYRLQ--HTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRL 1024 (1822)
Q Consensus 947 ~ta~ay~nLA~iy~~lG--~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~ 1024 (1822)
+-..+....|++....| .+.+|..+|++..+ ..+.+..+++.+|.++..+|+|++|...+++|+..
T Consensus 163 D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~---- 230 (290)
T PF04733_consen 163 DSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK---- 230 (290)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----
T ss_pred cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----
Confidence 22333333444555555 58889888888532 22345677899999999999999999999998753
Q ss_pred hCCCcHHHHHHHHHHHHHHHHccCHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000230 1025 LGADHIQTAASYHAIAIALSLMEAYS-LSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFE 1085 (1822)
Q Consensus 1025 ~G~dhp~tA~~l~nLA~~y~~lGd~e-eAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~ 1085 (1822)
++....++.|++.+...+|+.. .+.+++.+... ..|+|+.+.+....-..+.
T Consensus 231 ----~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~-----~~p~h~~~~~~~~~~~~FD 283 (290)
T PF04733_consen 231 ----DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ-----SNPNHPLVKDLAEKEAEFD 283 (290)
T ss_dssp -----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH-----HTTTSHHHHHHHHHHHHHH
T ss_pred ----ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----hCCCChHHHHHHHHHHHHH
Confidence 2334567889999999999984 45555554332 4688998877665544443
No 162
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.62 E-value=0.0054 Score=74.23 Aligned_cols=184 Identities=16% Similarity=0.070 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH-----------
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK----------- 932 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qk----------- 932 (1822)
.-..++.+++.+..+|+|..|..-..+++.+ +|....++.....+|...|+|.+...+..+
T Consensus 152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~--------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e 223 (400)
T COG3071 152 TLAVELTRARLLLNRRDYPAARENVDQLLEM--------TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE 223 (400)
T ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHHh--------CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH
Confidence 3445667889999999999999999999887 455556778888999999998876655443
Q ss_pred -------HHHHHHHhcCC--CC----------hh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------
Q 000230 933 -------ALDINERELGL--DH----------PD----TMKSYGDLAVFYYRLQHTELALKYVNRALYLLH--------- 980 (1822)
Q Consensus 933 -------AL~i~er~lG~--dh----------p~----ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~--------- 980 (1822)
|..-.-+-... +. |. .......++.-+..+|++++|.+..+++|+-..
T Consensus 224 ~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~ 303 (400)
T COG3071 224 AARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHh
Confidence 22211010010 00 00 123345677888999999999999998886321
Q ss_pred Hh-cC-------------CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHc
Q 000230 981 LT-CG-------------PSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLM 1046 (1822)
Q Consensus 981 ~i-~G-------------~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~l 1046 (1822)
.+ .+ ..||+....+..||.+|...+.|.+|..+|+.|+... ..+..+..+|.++..+
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~---------~s~~~~~~la~~~~~~ 374 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR---------PSASDYAELADALDQL 374 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC---------CChhhHHHHHHHHHHc
Confidence 00 01 1255556778889999999999999999999888753 2345577789999999
Q ss_pred cCHHHHHHHHHHHHHHHH
Q 000230 1047 EAYSLSVQHEQTTLQILQ 1064 (1822)
Q Consensus 1047 Gd~eeAi~~lekAL~I~k 1064 (1822)
|+..+|.+.+++++..+.
T Consensus 375 g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 375 GEPEEAEQVRREALLLTR 392 (400)
T ss_pred CChHHHHHHHHHHHHHhc
Confidence 999999999999886554
No 163
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.59 E-value=0.0013 Score=81.19 Aligned_cols=166 Identities=17% Similarity=0.097 Sum_probs=117.8
Q ss_pred HHHcCChHHHHHHHHhh-----hhhhhhccCCCch-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 000230 875 SLDKGKLEDAVNYGSKA-----LSKLMSVCGPYHR-MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDT 948 (1822)
Q Consensus 875 ~~~~G~yeeAie~~~eA-----L~l~~~i~G~dhp-~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~t 948 (1822)
....++|..|+.+|+.. +..+...+. .. +....+...+.++...++..+|.+.+++++.. .|..
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--------~P~~ 373 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--------DPNS 373 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCCc
Confidence 33446678888777543 222211100 00 12345567888999999999999999999987 3666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCC
Q 000230 949 MKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGAD 1028 (1822)
Q Consensus 949 a~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~d 1028 (1822)
.....++|..|...|++.+|+.++.+.+. +.|+....|..||..|..+|+..+|...+
T Consensus 374 ~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a~~A~-------------- 431 (484)
T COG4783 374 PLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEALLAR-------------- 431 (484)
T ss_pred cHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHHHHHH--------------
Confidence 77788999999999999999998887764 34666677888999999999876664433
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000230 1029 HIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESK 1087 (1822)
Q Consensus 1029 hp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qq 1087 (1822)
|..|...|++++|+..+..|.+ ..+.+.+....+-..+.++.++
T Consensus 432 -----------AE~~~~~G~~~~A~~~l~~A~~----~~~~~~~~~aR~dari~~~~~~ 475 (484)
T COG4783 432 -----------AEGYALAGRLEQAIIFLMRASQ----QVKLGFPDWARADARIDQLRQQ 475 (484)
T ss_pred -----------HHHHHhCCCHHHHHHHHHHHHH----hccCCcHHHHHHHHHHHHHHHH
Confidence 5556678999999999888766 4566677766666666665543
No 164
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.0094 Score=67.67 Aligned_cols=154 Identities=17% Similarity=0.175 Sum_probs=106.7
Q ss_pred cCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000230 878 KGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 957 (1822)
Q Consensus 878 ~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~ 957 (1822)
.++|++|.++|.+|-.+ |....+|..|-..|.+|-.+..+. | +..+.+..|...+.
T Consensus 27 ~~k~eeAadl~~~Aan~----------------------yklaK~w~~AG~aflkaA~~h~k~-~-skhDaat~YveA~~ 82 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANM----------------------YKLAKNWSAAGDAFLKAADLHLKA-G-SKHDAATTYVEAAN 82 (288)
T ss_pred CcchHHHHHHHHHHHHH----------------------HHHHHhHHHHHHHHHHHHHHHHhc-C-CchhHHHHHHHHHH
Confidence 34677777777666544 344455566666666666665443 2 33456777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhhCCCc-HHHHHH
Q 000230 958 FYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGL-GNVHVALRYLHEALKCNQRLLGADH-IQTAAS 1035 (1822)
Q Consensus 958 iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~l-Gd~eeAl~~leeALei~~~~~G~dh-p~tA~~ 1035 (1822)
+|.. ++.++|..+++++++|+.... .-..-+.-+..+|.+|..- .++++|+.+|++|-+.+.. +.. ...-.+
T Consensus 83 cykk-~~~~eAv~cL~~aieIyt~~G--rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC 156 (288)
T KOG1586|consen 83 CYKK-VDPEEAVNCLEKAIEIYTDMG--RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKC 156 (288)
T ss_pred Hhhc-cChHHHHHHHHHHHHHHHhhh--HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHH
Confidence 6654 499999999999999987653 1223345567889888765 8999999999999988642 222 223456
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 1036 YHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1036 l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
+...|..-..+++|.+|+..|++...
T Consensus 157 ~lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 157 LLKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888889999999998887554
No 165
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.55 E-value=0.00011 Score=61.06 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHH
Q 000230 1032 TAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLR 1073 (1822)
Q Consensus 1032 tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~ 1073 (1822)
++.++++||.+|..+|++++|+.++++++.++++.+|++||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 467899999999999999999999999999999999999985
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.55 E-value=0.00024 Score=65.31 Aligned_cols=60 Identities=33% Similarity=0.463 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 911 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 911 ~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
+.+|..++..|+|++|+..|++++.. +|....++..||.++..+|++++|+.+|++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999875 5889999999999999999999999999999976
No 167
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.53 E-value=0.00013 Score=60.74 Aligned_cols=42 Identities=43% Similarity=0.566 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000230 906 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 947 (1822)
Q Consensus 906 ~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ 947 (1822)
++.++++||.+|..+|++++|+.++++++.++++++|.+||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 367899999999999999999999999999999999999985
No 168
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.53 E-value=0.008 Score=64.54 Aligned_cols=175 Identities=25% Similarity=0.277 Sum_probs=133.7
Q ss_pred CChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHH
Q 000230 861 SSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAV-VLYHTGDFNQATIYQQKALDINER 939 (1822)
Q Consensus 861 ~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~-ly~~lGd~eeAle~~qkAL~i~er 939 (1822)
.......++..+..+...+++..|+..+..++...... .......+. ++...|+++.|..++.+++.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-- 160 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP--------DLAEALLALGALYELGDYEEALELYEKALELD-- 160 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc--------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence 44556678888999999999999999999998763221 222333344 8999999999999999995531
Q ss_pred hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000230 940 ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALK 1019 (1822)
Q Consensus 940 ~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALe 1019 (1822)
.........+..++..+...++++.|+..+.+++...... ....+.+++..+...++++.|+.++..++.
T Consensus 161 ---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 230 (291)
T COG0457 161 ---PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEKALE 230 (291)
T ss_pred ---CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHh
Confidence 1012456667777777889999999999999999875321 456788999999999999999999999998
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 1020 CNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1020 i~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
.... ....+..++..+...+++.+|...+.+++...
T Consensus 231 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 231 LDPD--------NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred hCcc--------cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7522 44556677777777778999999999888764
No 169
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.49 E-value=0.078 Score=64.62 Aligned_cols=172 Identities=20% Similarity=0.146 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
+....+-|..-+..|+|.+|+.+..++-+. +..-..+|..-|.+...+||++.|-.|..+|-+..
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~------- 148 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA------- 148 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-------
Confidence 445566677778889999999888886554 33445567777888888999999999988887652
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKC---- 1020 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei---- 1020 (1822)
..++...+...+.++..+|++..|..-..+++.+ ++.|+.. +.-...+|...|+|.....++.+.-+-
T Consensus 149 ~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~-----~pr~~~v---lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~ 220 (400)
T COG3071 149 GDDTLAVELTRARLLLNRRDYPAARENVDQLLEM-----TPRHPEV---LRLALRAYIRLGAWQALLAILPKLRKAGLLS 220 (400)
T ss_pred CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh-----CcCChHH---HHHHHHHHHHhccHHHHHHHHHHHHHccCCC
Confidence 1245667788888888999999998888888776 3445544 444567888888887777766432210
Q ss_pred ---------------HHHhh---C---------------CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1021 ---------------NQRLL---G---------------ADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1021 ---------------~~~~~---G---------------~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
.++.- | ..+|.+. ..++.-+...|++++|.+..++++.-
T Consensus 221 ~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~---~~~a~~li~l~~~~~A~~~i~~~Lk~ 292 (400)
T COG3071 221 DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELV---VAYAERLIRLGDHDEAQEIIEDALKR 292 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHH---HHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 00000 0 1223333 33477788999999999999988863
No 170
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.0045 Score=71.83 Aligned_cols=175 Identities=14% Similarity=0.056 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH----------HHH
Q 000230 866 RTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK----------ALD 935 (1822)
Q Consensus 866 ~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qk----------AL~ 935 (1822)
..+-.+|.+|+...+|..|-+.|++.-.+ ||.........|..++..+.+..|+..... +++
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lq 116 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQ 116 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHH
Confidence 34667899999999999999999887654 788888888888888888888888765433 222
Q ss_pred HHHHhc-C-C------------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000230 936 INEREL-G-L------------DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMME 1001 (1822)
Q Consensus 936 i~er~l-G-~------------dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy 1001 (1822)
+--.+. . . .....+....++|.+++..|+|+.|++-|+.|++.- | -.|.. -+|+|.+.
T Consensus 117 LqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs----G-yqpll---AYniALaH 188 (459)
T KOG4340|consen 117 LQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS----G-YQPLL---AYNLALAH 188 (459)
T ss_pred HHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc----C-CCchh---HHHHHHHH
Confidence 211110 0 0 112567778999999999999999999999998762 2 33443 47899999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhhC----------CC-----cH------HHHHHHHHHHHHHHHccCHHHHHHHH
Q 000230 1002 EGLGNVHVALRYLHEALKCNQRLLG----------AD-----HI------QTAASYHAIAIALSLMEAYSLSVQHE 1056 (1822)
Q Consensus 1002 ~~lGd~eeAl~~leeALei~~~~~G----------~d-----hp------~tA~~l~nLA~~y~~lGd~eeAi~~l 1056 (1822)
...|+|+.|+++..+.++.-.+-+. .+ ++ ....+++.-+.++++.++++.|.+.+
T Consensus 189 y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 189 YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 9999999999999998876443221 11 01 12345566677888889988886655
No 171
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.005 Score=75.48 Aligned_cols=202 Identities=17% Similarity=0.085 Sum_probs=149.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCC--CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000230 868 LLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGP--YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 945 (1822)
Q Consensus 868 L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~--dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dh 945 (1822)
|-.+..+-.-.|++.+|++-...+.+.+.+..++ .....+...+.+|......+.|+.|...|..|+...+..
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~----- 400 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI----- 400 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----
Confidence 3446677788999999999999999888776542 223356677888988889999999999999999876532
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000230 946 PDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPS-------HPNTAATYINVAMMEEGLGNVHVALRYLHEAL 1018 (1822)
Q Consensus 946 p~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~d-------hP~~a~al~nLA~iy~~lGd~eeAl~~leeAL 1018 (1822)
...+.+-.|||..|.+.|+-+.- .++++.. |+. +-..+.+++-.|.....++++.+|..++++.|
T Consensus 401 dl~a~~nlnlAi~YL~~~~~ed~----y~~ld~i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~L 472 (629)
T KOG2300|consen 401 DLQAFCNLNLAISYLRIGDAEDL----YKALDLI----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETL 472 (629)
T ss_pred HHHHHHHHhHHHHHHHhccHHHH----HHHHHhc----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 22455667899999997765432 3344332 333 23346678888999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000230 1019 KCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFES 1086 (1822)
Q Consensus 1019 ei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~q 1086 (1822)
++... ......++..+..|+.+....|+..++....+-+++..+++. |++-..-...-+..+++
T Consensus 473 kmana--ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~--Di~vqLws~si~~~L~~ 536 (629)
T KOG2300|consen 473 KMANA--EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP--DIPVQLWSSSILTDLYQ 536 (629)
T ss_pred hhcch--hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC--CchHHHHHHHHHHHHHH
Confidence 98622 122445777888999999999999999999999999877653 56655555555544443
No 172
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.46 E-value=0.0014 Score=81.58 Aligned_cols=116 Identities=23% Similarity=0.198 Sum_probs=98.5
Q ss_pred HHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000230 873 KTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 952 (1822)
Q Consensus 873 ~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay 952 (1822)
..+...++++.|++++++..+. +|+ +...||.++..+++-.+|+.+.++++.. .|.....+
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~LL 237 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSELL 237 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHHH
Confidence 3455568899999999886654 344 3456899999999999999999999954 46668888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000230 953 GDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH 1015 (1822)
Q Consensus 953 ~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~le 1015 (1822)
...|.++...++++.|+.+.++|..+ .|....++..||.+|..+|+|+.|+-.+.
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999999999987 37888899999999999999999997665
No 173
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.45 E-value=0.014 Score=67.79 Aligned_cols=173 Identities=18% Similarity=0.221 Sum_probs=129.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
-+..|++-|...++.|+|++|+.+|+.....+ +..+..-.++..++.++++.++|++|+.+..+-+..+ +
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P 102 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----P 102 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----C
Confidence 36779999999999999999999998887542 2345567788999999999999999999999888764 6
Q ss_pred CChhhHHHHHHHHHHHHHc-----CCH---HHHHHHHHHHHHHHHHhcCCCCh--------------hHHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRL-----QHT---ELALKYVNRALYLLHLTCGPSHP--------------NTAATYINVAMME 1001 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~l-----G~~---eeAl~~~~rAL~l~~~i~G~dhP--------------~~a~al~nLA~iy 1001 (1822)
.|++..-+++..|.+++.. .+. .+|+.-++..++-+ |+.+ ..+.--..+|..|
T Consensus 103 ~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 103 THPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred CCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999887654 222 33333333333321 1111 1233345678899
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Q 000230 1002 EGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHE 1056 (1822)
Q Consensus 1002 ~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~l 1056 (1822)
.+.|.|-.|+..+++.++-. ++...+-.++..|..+|..+|-.++|....
T Consensus 178 ~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~ 227 (254)
T COG4105 178 LKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAKKTA 227 (254)
T ss_pred HHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHHHHH
Confidence 99999999999999988865 334556677888899999999998886544
No 174
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.44 E-value=0.00084 Score=78.23 Aligned_cols=106 Identities=20% Similarity=0.228 Sum_probs=95.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
.+..+|+.|.-++..|+|..|...|+.-+..+ +..+.+..+++.||.+++.+|+|++|...|..++.-+ +
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P 209 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----P 209 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----C
Confidence 34558999999999999999999999988874 5677889999999999999999999999999988753 6
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLL 979 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~ 979 (1822)
+|+....+++.||.+..++|+.++|-..|++++.-+
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 788888999999999999999999999999988763
No 175
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.0092 Score=68.62 Aligned_cols=131 Identities=19% Similarity=0.167 Sum_probs=98.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000230 868 LLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 947 (1822)
Q Consensus 868 L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ 947 (1822)
...-|..+-..|+|++|+++|...|+- +|.....+-.--.+...+|+.-+|++...+-++.+ +.
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~d--------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~ 152 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLED--------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MN 152 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhcc--------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cC
Confidence 344567888899999999999988764 34444444433345567888889999888888775 44
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHH
Q 000230 948 TMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLG---NVHVALRYLHEALKCNQ 1022 (1822)
Q Consensus 948 ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lG---d~eeAl~~leeALei~~ 1022 (1822)
...++..|+.+|...|+|++|.-+|++.+-+ .|.....+..+|.+++-+| ++.-|.+||.+|++++.
T Consensus 153 D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 153 DQEAWHELAEIYLSEGDFEKAAFCLEELLLI--------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 5678999999999999999999999998754 2444445566777766655 56789999999999863
No 176
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.43 E-value=0.031 Score=68.94 Aligned_cols=178 Identities=15% Similarity=0.045 Sum_probs=130.8
Q ss_pred HHHHHcCChHHHHHHHHhhhhhhhhccCCC--chh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--C
Q 000230 873 KTSLDKGKLEDAVNYGSKALSKLMSVCGPY--HRM----TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL--D 944 (1822)
Q Consensus 873 ~~~~~~G~yeeAie~~~eAL~l~~~i~G~d--hp~----~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~--d 944 (1822)
.--+..|-|++|.++-.+++...++.--.+ .+- ....+-++..+-.-+|++.+|++-...+...+.+.-++ -
T Consensus 283 ~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Ll 362 (629)
T KOG2300|consen 283 IHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLL 362 (629)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHH
Confidence 334566788889998888887765542222 111 12345567788888999999999999999998886542 2
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRL 1024 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~ 1024 (1822)
....+.+.+.+|.++...+.|+.|...|..|....... ...+.+-.|+|.+|...|+-+. +.++++.
T Consensus 363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~---- 429 (629)
T KOG2300|consen 363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAED----LYKALDL---- 429 (629)
T ss_pred HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHH----HHHHHHh----
Confidence 33467788999999999999999999999999886432 2356677899999999888543 3334443
Q ss_pred hCCC-------cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 1025 LGAD-------HIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1025 ~G~d-------hp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
.|+. +...+.+++..|...+.++++.+|...+++.+++.
T Consensus 430 i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 430 IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 2333 23446677778888889999999999999999864
No 177
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.41 E-value=0.00053 Score=84.89 Aligned_cols=72 Identities=22% Similarity=0.172 Sum_probs=64.8
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
..|+...+++|||.+|+.+|+|++|+.+|++||++ .+++.....+++|+|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999998 3455555567999999999999999999999999997
No 178
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.40 E-value=0.014 Score=62.71 Aligned_cols=174 Identities=26% Similarity=0.276 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
.......+..+...+.+..+...+..++.. ...+.....+..++..+...+++..|+..+.+++....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 126 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP------ 126 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC------
Confidence 456777888999999999999999998864 12456677888999999999999999999998887532
Q ss_pred ChhhHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 945 HPDTMKSYGDLAV-FYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 945 hp~ta~ay~nLA~-iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
.. .......+. ++...|+++.|+.++.+++.+. +........+..++..+...++++.|+..+.+++.....
T Consensus 127 ~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 127 DP--DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 11 222333344 8999999999999999995521 101245556677777789999999999999999987532
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 000230 1024 LLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQ 1064 (1822)
Q Consensus 1024 ~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k 1064 (1822)
. ....+..++..+...+++..|+.++..++....
T Consensus 200 ~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 200 D-------DAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233 (291)
T ss_pred c-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc
Confidence 1 456788899999999999999999999988643
No 179
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.36 E-value=0.016 Score=63.74 Aligned_cols=180 Identities=15% Similarity=0.045 Sum_probs=122.3
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000230 871 SSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 950 (1822)
Q Consensus 871 lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ 950 (1822)
++....+.=+.+.++.-..+.+++. .+..-...||..+..+|++.+|..+|++++.- .- .....
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~A---------pTvqnr~rLa~al~elGr~~EA~~hy~qalsG------~f-A~d~a 125 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAIA---------PTVQNRYRLANALAELGRYHEAVPHYQQALSG------IF-AHDAA 125 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhhc---------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc------cc-CCCHH
Confidence 3444445556666665555555542 22334567999999999999999999999873 21 23345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcH
Q 000230 951 SYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHI 1030 (1822)
Q Consensus 951 ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp 1030 (1822)
.+..|+...+..+++..|...++...+.- +. -........+|..|..+|++.+|...|+.++..+- .+
T Consensus 126 ~lLglA~Aqfa~~~~A~a~~tLe~l~e~~-----pa-~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp------g~ 193 (251)
T COG4700 126 MLLGLAQAQFAIQEFAAAQQTLEDLMEYN-----PA-FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP------GP 193 (251)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhhcC-----Cc-cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC------CH
Confidence 67889999999999999999888776542 10 11223355679999999999999999999998751 12
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000230 1031 QTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYF 1084 (1822)
Q Consensus 1031 ~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l 1084 (1822)
.+.++ .+..+..+|+.++|..-+....+-.+ -..--.++....|+...
T Consensus 194 -~ar~~--Y~e~La~qgr~~ea~aq~~~v~d~~~---r~~~H~rkh~reW~~~A 241 (251)
T COG4700 194 -QARIY--YAEMLAKQGRLREANAQYVAVVDTAK---RSRPHYRKHHREWIKTA 241 (251)
T ss_pred -HHHHH--HHHHHHHhcchhHHHHHHHHHHHHHH---hcchhHHHHHHHHHHHH
Confidence 23444 48888999999999887765544322 22112335666777654
No 180
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.35 E-value=0.0011 Score=77.43 Aligned_cols=102 Identities=22% Similarity=0.199 Sum_probs=92.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000230 910 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPN 989 (1822)
Q Consensus 910 l~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~ 989 (1822)
+++.|.-++..|+|..|..-|+.-+.-+ ++.+.+..+++.||.+++.+|+|++|...|..++.-+ ++||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 7888999999999999999999988764 6788999999999999999999999999999988743 46788
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 990 TAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 990 ~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
...+++.||.++..+|+.++|...|++.++.+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 88899999999999999999999999988764
No 181
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.35 E-value=0.00063 Score=84.19 Aligned_cols=72 Identities=19% Similarity=0.142 Sum_probs=64.1
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 902 YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 902 dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
..|..+.+++++|.+|+.+|+|++|+..|++||++. +++.....+|+|+|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467888999999999999999999999999999982 444444467999999999999999999999999987
No 182
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=0.0051 Score=72.71 Aligned_cols=159 Identities=16% Similarity=0.095 Sum_probs=103.5
Q ss_pred HHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 000230 875 SLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGD 954 (1822)
Q Consensus 875 ~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~n 954 (1822)
++...+|.-|+.+++-.+.+-+ .+--..-..+|.|++++|+|++|+..|.-+..- +. --+....+
T Consensus 32 fls~rDytGAislLefk~~~~~-------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-------~~-~~~el~vn 96 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDR-------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-------DD-APAELGVN 96 (557)
T ss_pred HHhcccchhHHHHHHHhhccch-------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-------CC-CCcccchh
Confidence 3456789999999888775422 222345566899999999999999988776541 12 23456789
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH----------HHHHhcCCC---------ChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000230 955 LAVFYYRLQHTELALKYVNRALY----------LLHLTCGPS---------HPNTAATYINVAMMEEGLGNVHVALRYLH 1015 (1822)
Q Consensus 955 LA~iy~~lG~~eeAl~~~~rAL~----------l~~~i~G~d---------hP~~a~al~nLA~iy~~lGd~eeAl~~le 1015 (1822)
||.+++-+|+|.+|.....+|-+ +..+ ++.. -.++..-...||.+.+.+-+|++|++.|.
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahk-lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHK-LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH-hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877655421 1111 1110 11222334455666666666666666666
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 000230 1016 EALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQ 1057 (1822)
Q Consensus 1016 eALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~le 1057 (1822)
+.|. +++....+-..+|.+|+++.-++-+.+.+.
T Consensus 176 rvL~--------dn~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 176 RVLQ--------DNPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred HHHh--------cChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 6554 345666666788999999988877755543
No 183
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.016 Score=65.93 Aligned_cols=182 Identities=15% Similarity=0.070 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000230 866 RTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 945 (1822)
Q Consensus 866 ~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dh 945 (1822)
+.+...|+.|....+|..|-..|.+|..+..+. | ...+.+.+|...+.+|... +..+|+.++++|++|+.+. |. -
T Consensus 35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~-~-skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~-Gr-f 109 (288)
T KOG1586|consen 35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKA-G-SKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDM-GR-F 109 (288)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc-C-CchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhh-hH-H
Confidence 345556778888888888888999998887665 2 2336778888888877665 9999999999999998754 21 1
Q ss_pred hhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000230 946 PDTMKSYGDLAVFYYR-LQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRL 1024 (1822)
Q Consensus 946 p~ta~ay~nLA~iy~~-lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~ 1024 (1822)
...+..+..+|.+|-. +.++++|+.+|++|-+.+..-- .....-.++...|..-..+++|.+|+..|++.....
T Consensus 110 ~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee--s~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s--- 184 (288)
T KOG1586|consen 110 TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE--SVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS--- 184 (288)
T ss_pred HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 2234556678888865 4899999999999998875321 122234567777777888899999999998866532
Q ss_pred hCCCcHH-HH-HHHHHHHHHHHHccCHHHHHHHHH
Q 000230 1025 LGADHIQ-TA-ASYHAIAIALSLMEAYSLSVQHEQ 1057 (1822)
Q Consensus 1025 ~G~dhp~-tA-~~l~nLA~~y~~lGd~eeAi~~le 1057 (1822)
++..-.. .+ ..++.-|.++....|.-.|...++
T Consensus 185 ~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALe 219 (288)
T KOG1586|consen 185 LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALE 219 (288)
T ss_pred ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHH
Confidence 1111111 11 223444566666566554443333
No 184
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.0021 Score=71.15 Aligned_cols=124 Identities=19% Similarity=0.090 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCc
Q 000230 950 KSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADH 1029 (1822)
Q Consensus 950 ~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dh 1029 (1822)
..+-.-|.-++..|+|++|..-|.+||+++.... .-....+|.|.|.++..++.++.|+.-..+|+++.
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-------- 164 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-------- 164 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--------
Confidence 3445567888999999999999999999975443 23456789999999999999999999999999984
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 000230 1030 IQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQ 1092 (1822)
Q Consensus 1030 p~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~q 1092 (1822)
|.+-.++...|.+|..+..|++|+.-|++.+++ +|...++...+..+..+..+..
T Consensus 165 pty~kAl~RRAeayek~ek~eealeDyKki~E~--------dPs~~ear~~i~rl~~~i~ern 219 (271)
T KOG4234|consen 165 PTYEKALERRAEAYEKMEKYEEALEDYKKILES--------DPSRREAREAIARLPPKINERN 219 (271)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CcchHHHHHHHHhcCHHHHHHH
Confidence 555667778899999999999999999988875 5555566666655544443333
No 185
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.30 E-value=0.004 Score=77.50 Aligned_cols=118 Identities=16% Similarity=0.126 Sum_probs=97.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000230 913 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAA 992 (1822)
Q Consensus 913 LA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~ 992 (1822)
|-.++...++++.|+.++++.... +|+ +...||.++...++-.+|++++.+++.. .|..+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence 444556678888888888775442 344 3456899999999999999999999943 455578
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 000230 993 TYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQ 1057 (1822)
Q Consensus 993 al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~le 1057 (1822)
.+...|..|...++++.|+...++|..+. |....+|+.||.+|..+|+++.|+..+.
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 88899999999999999999999999874 6777899999999999999999997765
No 186
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.29 E-value=0.15 Score=67.46 Aligned_cols=189 Identities=13% Similarity=0.057 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
+...--.|.+...+|+++.|+++.+.++...-. ......+.++..+|.+..-.|++++|+.+.+++.++.++. +.
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~---~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~-~~- 532 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPE---AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH-DV- 532 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc---ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc-cc-
Confidence 344444688999999999999999999986422 2233456789999999999999999999999999998764 22
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPN---TAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~---~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
......+.+..+.++..+|+...|. ...+....+.......+. ...++..+..+|. +++.+..-....+.+.
T Consensus 533 ~~l~~~~~~~~s~il~~qGq~~~a~--~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~---r~~~~~~ear~~~~~~ 607 (894)
T COG2909 533 YHLALWSLLQQSEILEAQGQVARAE--QEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWL---RLDLAEAEARLGIEVG 607 (894)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH---HHhhhhHHhhhcchhh
Confidence 2334556677789999999433333 233333222222222222 2233333333333 3677776666666654
Q ss_pred HHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 000230 1022 QRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQ 1064 (1822)
Q Consensus 1022 ~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k 1064 (1822)
.... +.....-..++.||.++...|++++|...+.+....+.
T Consensus 608 ~~~~-~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 608 SVYT-PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hhcc-cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 3332 22222223346899999999999999999988877654
No 187
>PRK11906 transcriptional regulator; Provisional
Probab=97.27 E-value=0.0057 Score=76.10 Aligned_cols=150 Identities=11% Similarity=0.097 Sum_probs=113.6
Q ss_pred CcHhhHHHHhHHHHhhh----cCChhHHHHHHHHHHHHHc---------CChHHHHHHHHhhhhhhhhccCCCchhHHHH
Q 000230 843 FRKSDIISMVPVYKHVA----CSSADGRTLLESSKTSLDK---------GKLEDAVNYGSKALSKLMSVCGPYHRMTAGA 909 (1822)
Q Consensus 843 f~~eDI~~alpvvK~l~----~~s~~A~~L~~lG~~~~~~---------G~yeeAie~~~eAL~l~~~i~G~dhp~~a~a 909 (1822)
+..+++..++.++.+.. ..+..+.++..++.+++.. ....+|.++..+|+++ .+.-+.+
T Consensus 269 ~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--------d~~Da~a 340 (458)
T PRK11906 269 FTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--------TTVDGKI 340 (458)
T ss_pred cCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--------CCCCHHH
Confidence 45568888887777665 2344577777777776644 2345667777777766 5667889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000230 910 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPN 989 (1822)
Q Consensus 910 l~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~ 989 (1822)
+..+|.++...++++.|...|++|+.+ .|+.+.+++..|.++...|+.++|++.+++|+++- ...
T Consensus 341 ~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs-------P~~ 405 (458)
T PRK11906 341 LAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQLE-------PRR 405 (458)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------chh
Confidence 999999999999999999999999998 68999999999999999999999999999999872 223
Q ss_pred HHHHHHHHHH-HHHHCCCHHHHHHHHHH
Q 000230 990 TAATYINVAM-MEEGLGNVHVALRYLHE 1016 (1822)
Q Consensus 990 ~a~al~nLA~-iy~~lGd~eeAl~~lee 1016 (1822)
.+.....+-. +|+. ...+.|+.+|-+
T Consensus 406 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 406 RKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred hHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 3444455555 4443 456778777644
No 188
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.0098 Score=70.39 Aligned_cols=136 Identities=22% Similarity=0.175 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHH---
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI--NER--- 939 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i--~er--- 939 (1822)
...-+.+|.+++..|+|++|+..|.-+.+. +. -.+...-+||.+++.+|.|.+|.....+|-.- +.|
T Consensus 57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-------~~-~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlf 128 (557)
T KOG3785|consen 57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNK-------DD-APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLF 128 (557)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhcc-------CC-CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 345677899999999999999999877652 11 22456778999999999999998876665211 000
Q ss_pred ----hcCCC---------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 000230 940 ----ELGLD---------HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 1006 (1822)
Q Consensus 940 ----~lG~d---------hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd 1006 (1822)
-++.. -.++..-...||.+.+..-+|++|++.|.+.|. ++|+....-.++|.||.++.-
T Consensus 129 hlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDY 200 (557)
T KOG3785|consen 129 HLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDY 200 (557)
T ss_pred HHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcch
Confidence 01110 112233345667777777777777777777764 568888888899999999998
Q ss_pred HHHHHHHHHH
Q 000230 1007 VHVALRYLHE 1016 (1822)
Q Consensus 1007 ~eeAl~~lee 1016 (1822)
|+-+.+.+.-
T Consensus 201 ydvsqevl~v 210 (557)
T KOG3785|consen 201 YDVSQEVLKV 210 (557)
T ss_pred hhhHHHHHHH
Confidence 8887665543
No 189
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0032 Score=69.67 Aligned_cols=103 Identities=21% Similarity=0.193 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
+..+-.-|+-++..|+|++|..-|++||.++.... ......+|.+.|.++..++.++.|+.-+.+|+++
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel-------- 163 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIEL-------- 163 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--------
Confidence 45567789999999999999999999999975442 3456778999999999999999999999999998
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
.|....++..-|.+|..+..|++|+.-|++.+++
T Consensus 164 ~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 164 NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4777788889999999999999999999999876
No 190
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.24 E-value=0.035 Score=75.38 Aligned_cols=178 Identities=14% Similarity=0.012 Sum_probs=133.8
Q ss_pred hcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000230 859 ACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINE 938 (1822)
Q Consensus 859 ~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~e 938 (1822)
...+..+..+.+.-..+++.++.++|.+.+++||....-.-+..--.+..+|.||-+.|. .-+.-...|++|.+++.
T Consensus 1452 rssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG---~eesl~kVFeRAcqycd 1528 (1710)
T KOG1070|consen 1452 RSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG---TEESLKKVFERACQYCD 1528 (1710)
T ss_pred hcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC---cHHHHHHHHHHHHHhcc
Confidence 334444555556556778899999999999999987532222223345556666666654 45666778888888763
Q ss_pred HhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000230 939 RELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEAL 1018 (1822)
Q Consensus 939 r~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeAL 1018 (1822)
-...|..|.-+|...+.+++|.++|++.++-+. +....|..+|..+..+.+-+.|...+.+||
T Consensus 1529 ---------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1529 ---------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred ---------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 346789999999999999999999999887753 245677888999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1019 KCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1019 ei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
....+ ..|... ....|++.++.||-+.+..+|+..+..
T Consensus 1592 ~~lPk---~eHv~~---IskfAqLEFk~GDaeRGRtlfEgll~a 1629 (1710)
T KOG1070|consen 1592 KSLPK---QEHVEF---ISKFAQLEFKYGDAERGRTLFEGLLSA 1629 (1710)
T ss_pred hhcch---hhhHHH---HHHHHHHHhhcCCchhhHHHHHHHHhh
Confidence 98643 235443 455699999999999999998877764
No 191
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.24 E-value=0.0039 Score=69.79 Aligned_cols=172 Identities=15% Similarity=0.106 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
..|..+++.|..|-..|-+.-|.--|.++|.+ .|..+.+++.||..+...|+|+.|.+.|.-.+++
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------ 128 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------ 128 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc------
Confidence 46788999999999999999999999999998 6888999999999999999999999999998886
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-------------HHHHHHHHHHH------
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAA-------------TYINVAMMEEG------ 1003 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~-------------al~nLA~iy~~------ 1003 (1822)
+|..--+..|-|..++--|+|.-|.+-+.+-.+- .+.+|-... +..||..-+..
T Consensus 129 --Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~W 201 (297)
T COG4785 129 --DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQW 201 (297)
T ss_pred --CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhh
Confidence 4666667788888888999999998765443221 112222111 11222222221
Q ss_pred --------CCCHHHHHHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 1004 --------LGNVHVALRYLHEALKCNQRLLGADHIQ----TAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1004 --------lGd~eeAl~~leeALei~~~~~G~dhp~----tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
+|+..+ ...++++.. +..++.. ...+++.||..|...|+.++|..+|+-|+.
T Consensus 202 G~~iV~~yLgkiS~-e~l~~~~~a-----~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 202 GWNIVEFYLGKISE-ETLMERLKA-----DATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hHHHHHHHHhhccH-HHHHHHHHh-----hccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 122111 111222221 1222222 346788999999999999999999998775
No 192
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.21 E-value=0.019 Score=71.62 Aligned_cols=131 Identities=18% Similarity=0.091 Sum_probs=92.2
Q ss_pred HHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--
Q 000230 870 ESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD-- 947 (1822)
Q Consensus 870 ~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~-- 947 (1822)
.+-.......+.+.-+++.++||++ .|+.+.+|..||.-. ..-..+|+.+|++|++..+..+|.+...
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~ 242 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQH 242 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhc
Confidence 3344556777899999999999998 577888888877532 2336899999999999999888763210
Q ss_pred ---------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000230 948 ---------------TMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 1012 (1822)
Q Consensus 948 ---------------ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~ 1012 (1822)
...+...||.++.++|+.++|+++++..++.. ...+...+..||-.+|..++.|.++..
T Consensus 243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~------p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 243 HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF------PNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC------CccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 13344667777778888888887777766542 112345567777777778777777766
Q ss_pred HHHH
Q 000230 1013 YLHE 1016 (1822)
Q Consensus 1013 ~lee 1016 (1822)
.+.+
T Consensus 317 lL~k 320 (539)
T PF04184_consen 317 LLAK 320 (539)
T ss_pred HHHH
Confidence 6554
No 193
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0059 Score=72.13 Aligned_cols=120 Identities=18% Similarity=0.134 Sum_probs=97.7
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcC---CHHHHHHHH
Q 000230 854 VYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTG---DFNQATIYQ 930 (1822)
Q Consensus 854 vvK~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lG---d~eeAle~~ 930 (1822)
+-.|+...+.+++.+..+|.+|+.+|++..|...|.+|+++ .++....+..+|.+++.+. ...+|...+
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 34566678889999999999999999999999999999998 4555667778888887764 356788899
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000230 931 QKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAAT 993 (1822)
Q Consensus 931 qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~a 993 (1822)
++++.. +|..+.+++.||..++.+|+|.+|+..++..|... .++.|....+
T Consensus 217 ~~al~~--------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~i 267 (287)
T COG4235 217 RQALAL--------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLI 267 (287)
T ss_pred HHHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHH
Confidence 999886 46778899999999999999999999999888763 4455554433
No 194
>PRK15331 chaperone protein SicA; Provisional
Probab=97.18 E-value=0.0018 Score=70.63 Aligned_cols=99 Identities=11% Similarity=-0.045 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
...+.++..|.-++++|+|++|..+|+-..-. .+.....+..||.++..+++|++|+..|-.|..+.
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~----- 101 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL----- 101 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----
Confidence 34567888999999999999999999765543 23345578999999999999999999999998873
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALY 977 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~ 977 (1822)
.++| ...+.+|.+|..+|+.+.|+.+|..++.
T Consensus 102 ~~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 KNDY---RPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cCCC---CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 2333 3478899999999999999999999887
No 195
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.15 E-value=0.001 Score=77.97 Aligned_cols=96 Identities=21% Similarity=0.148 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 946 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp 946 (1822)
.+-+.|+.|+.+|.|++|+++|.+++.+ .|..+..+.|.|.+|+.+..|..|...+..|+.+-+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-------- 162 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-------- 162 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH--------
Confidence 3678899999999999999999999987 455666788999999999999999999999999853
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 947 DTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 947 ~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
....+|..-|.+-..+|...+|.+-|+.+|++
T Consensus 163 ~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 163 LYVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 46789999999999999999999999999987
No 196
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.12 E-value=0.11 Score=62.35 Aligned_cols=141 Identities=21% Similarity=0.133 Sum_probs=99.1
Q ss_pred HHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHh--cCCCCh----h
Q 000230 875 SLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTG-DFNQATIYQQKALDINERE--LGLDHP----D 947 (1822)
Q Consensus 875 ~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lG-d~eeAle~~qkAL~i~er~--lG~dhp----~ 947 (1822)
...+|+++.|..++.++-.+............+..++++|...+..+ ++++|..++++|+++++.. ....++ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999999999877643322234457889999999999999 9999999999999998652 122333 3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 948 TMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 948 ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
...++..|+.+|...+.++...+ ..+++.....-+| +||.+.... +- ++...++.+.+.+.+.+.+.-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~L~--l~-il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFLLK--LE-ILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHHHH--HH-HHhccCChhHHHHHHHHHHHh
Confidence 46788899999999988865554 4555555555554 455553222 22 222278888887777776654
No 197
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.10 E-value=0.17 Score=64.52 Aligned_cols=194 Identities=15% Similarity=0.087 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHH-----------------------------HH--
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYS-----------------------------LL-- 913 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~-----------------------------nL-- 913 (1822)
+..++.||..|+..|.|+.|.+.|++++...-.+- +...+..+|. .+
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvr--DFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVR--DFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehh--hHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 56678899999999999999999999987432210 0000000000 00
Q ss_pred ----------------------------HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH
Q 000230 914 ----------------------------AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHT 965 (1822)
Q Consensus 914 ----------------------------A~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~ 965 (1822)
-++-...|+..+-+..|.+|+.-..-.. .+-.....+..+|.+|...|+.
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~k--a~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKK--AVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCccc--CCCChhhHHHHHHHHHHhcCcH
Confidence 0111112344444555555544321100 1112345678899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----HhhCCCcHHHHHHHHHHHH
Q 000230 966 ELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQ----RLLGADHIQTAASYHAIAI 1041 (1822)
Q Consensus 966 eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~----~~~G~dhp~tA~~l~nLA~ 1041 (1822)
+.|...+++|+..--. .-.+.+.++.+.|.+-....+++.|++++++|..+-. ..+...++-.+.+ ++--.
T Consensus 404 ~~aRvifeka~~V~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl-hrSlk 478 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL-HRSLK 478 (835)
T ss_pred HHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH-HHhHH
Confidence 9999999999875211 1245688999999999999999999999999886422 2233334433333 33334
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHHh
Q 000230 1042 ALSLMEAYSLSVQHEQTTLQILQAKL 1067 (1822)
Q Consensus 1042 ~y~~lGd~eeAi~~lekAL~I~k~~L 1067 (1822)
++...-|+++++-.++.+-..|.+++
T Consensus 479 iWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45555566666666666666555544
No 198
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.10 E-value=0.021 Score=73.34 Aligned_cols=184 Identities=14% Similarity=-0.032 Sum_probs=125.1
Q ss_pred HHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000230 870 ESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDINERELGLDH 945 (1822)
Q Consensus 870 ~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~----lGd~eeAle~~qkAL~i~er~lG~dh 945 (1822)
.+-....-.|+-+.+++++.++.+ ...+.++.-....-.|+..-..+.. ..+.+.|.+.+...+.. +
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------y 263 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------Y 263 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------C
Confidence 333444566889999999998866 2333221111111222222222222 23344555555554443 5
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Q 000230 946 PDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLL 1025 (1822)
Q Consensus 946 p~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~ 1025 (1822)
|+-...+...|.++...|+.++|+++|++++......- .-...+++.+|.++..+.+|++|..++.+.++.
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~----Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~----- 334 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK----QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE----- 334 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH----hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-----
Confidence 78888899999999999999999999999885332221 112456899999999999999999999888764
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCH-------HHHHHHHHHHHHHHHHHhCCCCHH
Q 000230 1026 GADHIQTAASYHAIAIALSLMEAY-------SLSVQHEQTTLQILQAKLGSEDLR 1073 (1822)
Q Consensus 1026 G~dhp~tA~~l~nLA~~y~~lGd~-------eeAi~~lekAL~I~k~~LG~dhp~ 1073 (1822)
+....+...+..|.++..+|+. ++|..+++++-....++.|..-|-
T Consensus 335 --s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~ 387 (468)
T PF10300_consen 335 --SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPL 387 (468)
T ss_pred --cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 2445677788899999999999 788888888877777777755443
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.012 Score=69.73 Aligned_cols=120 Identities=23% Similarity=0.155 Sum_probs=95.1
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Q 000230 903 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ---HTELALKYVNRALYLL 979 (1822)
Q Consensus 903 hp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG---~~eeAl~~~~rAL~l~ 979 (1822)
+|..+.-+..||.+|+.+|++..|+.-|++|+.+. ++....+..+|.+++.+. ...+|..++++++.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 78888999999999999999999999999999983 555667778888776553 357888999999876
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 000230 980 HLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIA 1042 (1822)
Q Consensus 980 ~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~ 1042 (1822)
| |.-..+++.||..+...|+|.+|...++..|+. ...+.+....+-..++..
T Consensus 223 ------D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~----lp~~~~rr~~ie~~ia~~ 274 (287)
T COG4235 223 ------D-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL----LPADDPRRSLIERSIARA 274 (287)
T ss_pred ------C-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCCCchHHHHHHHHHHH
Confidence 3 455678899999999999999999999998876 345555554444444433
No 200
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.06 E-value=0.03 Score=70.85 Aligned_cols=185 Identities=17% Similarity=0.141 Sum_probs=115.6
Q ss_pred HHHHhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHh------hhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000230 853 PVYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSK------ALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQA 926 (1822)
Q Consensus 853 pvvK~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~e------AL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeA 926 (1822)
.+++|+...-...+.+-..|.+|-...++++|+++|.+ |+++.+-.+. ..+...-...|.-+...|+++.|
T Consensus 649 ~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp---~evv~lee~wg~hl~~~~q~daa 725 (1636)
T KOG3616|consen 649 EILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP---EEVVKLEEAWGDHLEQIGQLDAA 725 (1636)
T ss_pred HHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc---HHHhhHHHHHhHHHHHHHhHHHH
Confidence 34555554444455566678888899999999998875 4555444332 22333444567777788999999
Q ss_pred HHHHHHHHHHHHH---hcCC--------------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000230 927 TIYQQKALDINER---ELGL--------------DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPN 989 (1822)
Q Consensus 927 le~~qkAL~i~er---~lG~--------------dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~ 989 (1822)
+.+|-+|-.+... .+|. |..-....|..+|.-|...|+|+.|.++|-++=.
T Consensus 726 inhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~------------ 793 (1636)
T KOG3616|consen 726 INHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL------------ 793 (1636)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch------------
Confidence 8877654332211 1111 1111223355667777788888888887766521
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHH------HHHHHHH
Q 000230 990 TAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHE------QTTLQIL 1063 (1822)
Q Consensus 990 ~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~l------ekAL~I~ 1063 (1822)
....-.+|.+.|+|+.|.++-+++ +|+. .+..+|...|.-+...|+|.+|.++| .+|+++|
T Consensus 794 ----~~dai~my~k~~kw~da~kla~e~-------~~~e--~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmy 860 (1636)
T KOG3616|consen 794 ----FKDAIDMYGKAGKWEDAFKLAEEC-------HGPE--ATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMY 860 (1636)
T ss_pred ----hHHHHHHHhccccHHHHHHHHHHh-------cCch--hHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHH
Confidence 122335677778887776654443 4443 45567777788888999999998877 4677777
Q ss_pred HH
Q 000230 1064 QA 1065 (1822)
Q Consensus 1064 k~ 1065 (1822)
.+
T Consensus 861 dk 862 (1636)
T KOG3616|consen 861 DK 862 (1636)
T ss_pred Hh
Confidence 64
No 201
>PRK15331 chaperone protein SicA; Provisional
Probab=97.05 E-value=0.0031 Score=68.87 Aligned_cols=102 Identities=11% Similarity=-0.031 Sum_probs=84.6
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000230 903 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLT 982 (1822)
Q Consensus 903 hp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i 982 (1822)
..+.....+..|.-++.+|++++|..+|+-...+ ++.....+..||.++..+++|++|+.+|-.|..+..
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-- 102 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-- 102 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--
Confidence 5677788899999999999999999999876553 234456689999999999999999999999887642
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 983 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 983 ~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
++|. ..+..|.||..+|+...|+.+|+.++..
T Consensus 103 ---~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 103 ---NDYR---PVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred ---CCCC---ccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 3333 2577899999999999999999998873
No 202
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.05 E-value=0.0069 Score=64.85 Aligned_cols=105 Identities=19% Similarity=0.311 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
.+..++..|...+..|+|++|++.|+.....+ +..+....+...||.+|+..++|++|+..+++-+.+ -+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP 78 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HP 78 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC
Confidence 35678999999999999999999998887663 334456678899999999999999999999999887 47
Q ss_pred CChhhHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQH---------------TELALKYVNRALYL 978 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~---------------~eeAl~~~~rAL~l 978 (1822)
.||..--+++..|++++.+.. ..+|+..|++.+..
T Consensus 79 ~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 899999999999999998876 66777777766654
No 203
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.97 E-value=2 Score=55.37 Aligned_cols=193 Identities=17% Similarity=0.059 Sum_probs=136.4
Q ss_pred HHhhhcCC---hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000230 855 YKHVACSS---ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQ 931 (1822)
Q Consensus 855 vK~l~~~s---~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~q 931 (1822)
++.+.+.. .....+...|..|...|+++.|...|++|+..- | +.-.+.+..|..-|..-....+++.|+.+.+
T Consensus 374 v~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~---y-~~v~dLa~vw~~waemElrh~~~~~Al~lm~ 449 (835)
T KOG2047|consen 374 VKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP---Y-KTVEDLAEVWCAWAEMELRHENFEAALKLMR 449 (835)
T ss_pred HHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC---c-cchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44444432 345677889999999999999999999998762 1 1234678888899988888999999999999
Q ss_pred HHHHHHHH----hcCCCChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000230 932 KALDINER----ELGLDHPDT------MKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMME 1001 (1822)
Q Consensus 932 kAL~i~er----~lG~dhp~t------a~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy 1001 (1822)
+|+.+=.. .+...+|-. ..++..++.+.-..|-++.....|.+.+++... +.....|.|+.+
T Consensus 450 ~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria--------TPqii~NyAmfL 521 (835)
T KOG2047|consen 450 RATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA--------TPQIIINYAMFL 521 (835)
T ss_pred hhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC--------CHHHHHHHHHHH
Confidence 98765221 122233322 344556677777788888888888888887532 334567889999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1002 EGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1002 ~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
....-+++|.+.|++.+.++. -+.-.++-..|......-+.--..+.|..+|++|+..
T Consensus 522 Eeh~yfeesFk~YErgI~LFk---~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 522 EEHKYFEESFKAYERGISLFK---WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG 579 (835)
T ss_pred HhhHHHHHHHHHHHcCCccCC---CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 999999999999998887752 1222234444444444444445788999999999984
No 204
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.97 E-value=0.031 Score=57.47 Aligned_cols=122 Identities=23% Similarity=0.199 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHhcCC---CCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 905 MTAGAYSLLAVVLY--HTGDFNQATIYQQKALDINERELGL---DHP-DTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 905 ~~a~al~nLA~ly~--~lGd~eeAle~~qkAL~i~er~lG~---dhp-~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
+++.+|..|+..-. .-|-|++|..-+++|+++.+.+-.. ||. ..+.++..|+..+..+|+|++++.-..++|..
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 45667777766544 4588999999999999998755322 332 23567788999999999999999999999998
Q ss_pred HHHhcCCCChh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCC
Q 000230 979 LHLTCGPSHPN----TAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGA 1027 (1822)
Q Consensus 979 ~~~i~G~dhP~----~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~ 1027 (1822)
+.+- |+-|.+ .+.+.++.|..+..+|+.++|+..|+.+-++.....|.
T Consensus 85 FNRR-GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 85 FNRR-GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HHHH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred Hhhc-cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 8765 333433 45566788999999999999999999999988766553
No 205
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.92 E-value=0.034 Score=57.20 Aligned_cols=116 Identities=23% Similarity=0.160 Sum_probs=88.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhhhhhccCC---Cchh-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 869 LESSKTSLDKGKLEDAVNYGSKALSKLMSVCGP---YHRM-TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 869 ~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~---dhp~-~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
+.-|.-.+..|.|++|..-+++|+++.+.+... ||.. -+.|+..|+.++..+|+|++++.-..+||..+.|. |.-
T Consensus 13 Ls~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR-GEL 91 (144)
T PF12968_consen 13 LSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR-GEL 91 (144)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH---T
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc-ccc
Confidence 344667778899999999999999998877544 3433 36788899999999999999999999999998875 555
Q ss_pred Chh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 945 HPD----TMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGP 985 (1822)
Q Consensus 945 hp~----ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~ 985 (1822)
|.+ .+.+.++-|..+..+|+.++|+..|+.+-++...--|.
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 544 35566788999999999999999999999987665543
No 206
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.90 E-value=0.0065 Score=73.12 Aligned_cols=140 Identities=22% Similarity=0.128 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTG--DFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lG--d~eeAle~~qkAL~i~er~lG 942 (1822)
.+.+...-.+++..++++.|...++.+-++. . +..-+....|++....| .+.+|...|++...
T Consensus 131 lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~-----e---D~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~------- 195 (290)
T PF04733_consen 131 LELLALAVQILLKMNRPDLAEKELKNMQQID-----E---DSILTQLAEAWVNLATGGEKYQDAFYIFEELSD------- 195 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-----C---CHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC-------
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----C---cHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-------
Confidence 4555556789999999999999888765541 2 22222223333444455 57888888777432
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHH
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-HVALRYLHEALKCN 1021 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~-eeAl~~leeALei~ 1021 (1822)
..+.+...++.+|.++..+|+|++|...+++|+.. .|....++.|++.+...+|+. +.+.+++.+....
T Consensus 196 -~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~- 265 (290)
T PF04733_consen 196 -KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS- 265 (290)
T ss_dssp -CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH-
T ss_pred -ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh-
Confidence 23457788999999999999999999999998743 244456788999999999998 5566676664433
Q ss_pred HHhhCCCcHHHH
Q 000230 1022 QRLLGADHIQTA 1033 (1822)
Q Consensus 1022 ~~~~G~dhp~tA 1033 (1822)
.++|+.+.
T Consensus 266 ----~p~h~~~~ 273 (290)
T PF04733_consen 266 ----NPNHPLVK 273 (290)
T ss_dssp ----TTTSHHHH
T ss_pred ----CCCChHHH
Confidence 35676543
No 207
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0044 Score=70.49 Aligned_cols=104 Identities=19% Similarity=0.231 Sum_probs=95.1
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
..+..+-+-|+.++.-.+|..|+..|.+|+.+ .|..+..|.+-|.+|+++.+|+.+..-+++|+++
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql------ 73 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL------ 73 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc------
Confidence 34566777899999999999999999999987 7888899999999999999999999999999998
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLT 982 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i 982 (1822)
.|+.+...+.||..+.....|.+|+..+++|+.+.+..
T Consensus 74 --~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 74 --DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred --ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 58899999999999999999999999999999988764
No 208
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.81 E-value=0.016 Score=62.13 Aligned_cols=104 Identities=18% Similarity=0.151 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 907 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPS 986 (1822)
Q Consensus 907 a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~d 986 (1822)
...++.-|...+..|+|.+|+..++....-+ +..+....+.+.|+.+|+..++|++|+..+++-+++ -+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 4568888999999999999999988865543 345567789999999999999999999999998887 478
Q ss_pred ChhHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHH
Q 000230 987 HPNTAATYINVAMMEEGLGN---------------VHVALRYLHEALKC 1020 (1822)
Q Consensus 987 hP~~a~al~nLA~iy~~lGd---------------~eeAl~~leeALei 1020 (1822)
||.+-.+++..|+++..+.. ...|...|++.+..
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 99999999999999988766 56666666666554
No 209
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.13 Score=59.97 Aligned_cols=175 Identities=17% Similarity=0.153 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 946 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp 946 (1822)
.+...|.+|+..|++++|+........+ .+...--.++.++.+++-|....++..++-+.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------- 169 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED------- 169 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-------
Confidence 4455688999999999999988774333 22222235667777888888888888776432
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhC
Q 000230 947 DTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLG 1026 (1822)
Q Consensus 947 ~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G 1026 (1822)
.++..||..|...- .+-.-++.|+.+++...+.. +.+..+++.+|.+...+|+|++|...+++||...
T Consensus 170 ---~tLtQLA~awv~la---~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd----- 237 (299)
T KOG3081|consen 170 ---ATLTQLAQAWVKLA---TGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD----- 237 (299)
T ss_pred ---HHHHHHHHHHHHHh---ccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-----
Confidence 23455555554321 00011344555555554332 4456778999999999999999999999999753
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 000230 1027 ADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAW 1080 (1822)
Q Consensus 1027 ~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~ 1080 (1822)
.....++.|+-.+-..+|.-.++..-+-.-+. ...++|+-+......
T Consensus 238 ---~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk----~~~p~h~~vk~~~ek 284 (299)
T KOG3081|consen 238 ---AKDPETLANLIVLALHLGKDAEVTERNLSQLK----LSHPEHPFVKHLNEK 284 (299)
T ss_pred ---CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH----hcCCcchHHHHHHHH
Confidence 23355677777777888888777665543333 456778766655443
No 210
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.75 E-value=0.44 Score=63.44 Aligned_cols=190 Identities=18% Similarity=0.124 Sum_probs=127.4
Q ss_pred hhHHHHHHHHHHHH-HcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000230 863 ADGRTLLESSKTSL-DKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINEREL 941 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~-~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~l 941 (1822)
.++.+.+.+|.+++ ...++++|..++++++.+.++ .........+...|+.+|...+... |..++++++..++.
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-- 131 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-- 131 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc--
Confidence 35677889999888 788999999999999998776 2222234567778899999998888 99999999999875
Q ss_pred CCCChhhHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000230 942 GLDHPDTMKSYGDL-AVFYYRLQHTELALKYVNRALYLLHLTCGPSHPN-TAATYINVAMMEEGLGNVHVALRYLHEALK 1019 (1822)
Q Consensus 942 G~dhp~ta~ay~nL-A~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~-~a~al~nLA~iy~~lGd~eeAl~~leeALe 1019 (1822)
..|......+..| ...+...+++..|++.++....+.... | ++. ...+...-|.+....+..+++++.++++..
T Consensus 132 -~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-~--d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 132 -YGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-G--DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred -cCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-C--CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 1222222333333 233333389999999999999887643 2 233 333445556777778888999999999988
Q ss_pred HHHHh--hCCCcHHHHHHHHHHHHH--HHHccCHHHHHHHHHHHHH
Q 000230 1020 CNQRL--LGADHIQTAASYHAIAIA--LSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1020 i~~~~--~G~dhp~tA~~l~nLA~~--y~~lGd~eeAi~~lekAL~ 1061 (1822)
..+.. -+..++....++..+-.+ +...|+++.+.+.+++.-+
T Consensus 208 ~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 208 QARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77654 122233333444443333 3356676666666654433
No 211
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.12 Score=60.23 Aligned_cols=207 Identities=15% Similarity=0.033 Sum_probs=130.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---------
Q 000230 869 LESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER--------- 939 (1822)
Q Consensus 869 ~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er--------- 939 (1822)
+++|+-....+++++|+..|.+.|..-...-...--+.-.+..+|+.+|...|++..-.+......+.++.
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 56788888889999999999998865111100011233456788999999999886544433332222211
Q ss_pred -------hcCC-CC-hhhH--------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 000230 940 -------ELGL-DH-PDTM--------------------KSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNT 990 (1822)
Q Consensus 940 -------~lG~-dh-p~ta--------------------~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~ 990 (1822)
.-+. ++ ++.+ ..-..|..+++..|+|.+|+.+..-.+.-+++.- +.+..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~D--DK~~L 164 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYD--DKINL 164 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhc--Cccce
Confidence 1111 11 1111 1124567778889999999998888877776653 45555
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCC
Q 000230 991 AATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSE 1070 (1822)
Q Consensus 991 a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~d 1070 (1822)
...+..=..+|+...+..++..-+..|-.....++-+.. ..+..-..-|..++...+|.-|..||-+|++-| .++..
T Consensus 165 i~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpq-lqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf--t~l~~ 241 (421)
T COG5159 165 ITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQ-LQAQLDLLSGILHCDDRDYKTASSYFIEALEGF--TLLKM 241 (421)
T ss_pred eehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHH-HHHHHHHhccceeeccccchhHHHHHHHHHhcc--ccccc
Confidence 666666677888888888888777777666555543321 223333344666677889999999999999987 45666
Q ss_pred CHHHHHHHHH
Q 000230 1071 DLRTQDAAAW 1080 (1822)
Q Consensus 1071 hp~t~~a~~~ 1080 (1822)
|.....++.+
T Consensus 242 d~kAc~sLkY 251 (421)
T COG5159 242 DVKACVSLKY 251 (421)
T ss_pred hHHHHHHHHH
Confidence 6544444443
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.72 E-value=0.0072 Score=56.69 Aligned_cols=58 Identities=28% Similarity=0.383 Sum_probs=53.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 913 LAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 913 LA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
|..+|...++|++|+.++++++.+ +|.....+..+|.++..+|++.+|+..++++++.
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 467899999999999999999998 5778889999999999999999999999999976
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.70 E-value=0.0057 Score=57.35 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=53.3
Q ss_pred HHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 872 SKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 936 (1822)
Q Consensus 872 G~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i 936 (1822)
..+|+.+++|++|+.++++++.+ +|+....+..+|.+|..+|++.+|+..+++++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56889999999999999999998 6778889999999999999999999999999987
No 214
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.68 E-value=0.0032 Score=58.20 Aligned_cols=54 Identities=24% Similarity=0.351 Sum_probs=48.1
Q ss_pred HHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 875 SLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 936 (1822)
Q Consensus 875 ~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i 936 (1822)
++..|+|++|+.+|++++.. +|....++..||.+|..+|++++|..++++++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36789999999999999987 6777888999999999999999999999998875
No 215
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.67 E-value=0.042 Score=74.66 Aligned_cols=206 Identities=16% Similarity=0.019 Sum_probs=136.8
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000230 903 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLT 982 (1822)
Q Consensus 903 hp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i 982 (1822)
||..+..|...-.-+..+++.++|...+++||....-.-+..--++..+|.||=.+|. .-+.-.+.|+||.+++.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG---~eesl~kVFeRAcqycd-- 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG---TEESLKKVFERACQYCD-- 1528 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC---cHHHHHHHHHHHHHhcc--
Confidence 6777777777666778899999999999999986511112233456677777766664 55666788888887752
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 983 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 983 ~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
....+..|.-+|..-+.+++|.++|+..++.+. +...+|..+|..+..+.+-+.|...+++|+..
T Consensus 1529 -------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1529 -------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred -------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 345678899999999999999999998887752 34567788899999999999999999999997
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHcCCCCCchhhhccccccHHHHH-HHHcCCCHHHHHHHHHHHHH
Q 000230 1063 LQAKLGSEDLRTQDAAAWLEYFESKALE---QQEAARNGTPKPDASISSKGHLSVSDLL-DYIAPDTDSKARDAQRKARA 1138 (1822)
Q Consensus 1063 ~k~~LG~dhp~t~~a~~~L~~l~qqAl~---~qeAl~~g~~~p~~~~a~~~~lSv~eLl-~yi~~Gd~ekA~~~~~KAL~ 1138 (1822)
..+ .+|-....--..|.+-+..+-+ +.+-+. ..+|.-. + -|.-++ .-+..|+.+.++.+|++++.
T Consensus 1594 lPk---~eHv~~IskfAqLEFk~GDaeRGRtlfEgll--~ayPKRt----D--lW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1594 LPK---QEHVEFISKFAQLEFKYGDAERGRTLFEGLL--SAYPKRT----D--LWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred cch---hhhHHHHHHHHHHHhhcCCchhhHHHHHHHH--hhCccch----h--HHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 543 3465554444444433222211 111110 1121110 0 221112 23445788888899988875
Q ss_pred H
Q 000230 1139 K 1139 (1822)
Q Consensus 1139 i 1139 (1822)
+
T Consensus 1663 l 1663 (1710)
T KOG1070|consen 1663 L 1663 (1710)
T ss_pred c
Confidence 4
No 216
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.62 E-value=0.033 Score=61.44 Aligned_cols=135 Identities=16% Similarity=0.059 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000230 866 RTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 945 (1822)
Q Consensus 866 ~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dh 945 (1822)
..-+.+|..+...|++.+|..+|++++.-. ..+-...+..||...+..+++..|...+++..+.- ..
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~-------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~------pa 156 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGI-------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN------PA 156 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccc-------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC------Cc
Confidence 345678999999999999999999998742 22335678889999999999999999888876642 11
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000230 946 PDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQ 1022 (1822)
Q Consensus 946 p~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~ 1022 (1822)
..+......+|..|..+|.+.+|..-|+.++..+ |. .......+.++..+|+.++|..-|....+...
T Consensus 157 ~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--------pg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~ 224 (251)
T COG4700 157 FRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--------PG-PQARIYYAEMLAKQGRLREANAQYVAVVDTAK 224 (251)
T ss_pred cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 1233456778999999999999999999998764 22 23345568999999999999887776665543
No 217
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.61 E-value=0.0073 Score=71.19 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=90.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHH
Q 000230 953 GDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQT 1032 (1822)
Q Consensus 953 ~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~t 1032 (1822)
-.-|.-|+.+|.|++|+.||.+++.+ .|.....+.|.|++|..+..|..|..-+..|+.+.+. +
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~--------Y 164 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL--------Y 164 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH--------H
Confidence 34578899999999999999999876 3555667899999999999999999999999988543 4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000230 1033 AASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYF 1084 (1822)
Q Consensus 1033 A~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l 1084 (1822)
..+|..-|.+...+|...+|..-++.+|. |.++....+..+..|..+
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~-----LEP~~~ELkK~~a~i~Sl 211 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLA-----LEPKNIELKKSLARINSL 211 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHh-----hCcccHHHHHHHHHhcch
Confidence 67788889999999999999999999987 456655555555555443
No 218
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.56 E-value=0.02 Score=65.94 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=83.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhHHHHH
Q 000230 920 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPS-----HPNTAATY 994 (1822)
Q Consensus 920 lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~d-----hP~~a~al 994 (1822)
...+++|++.|.-|+..++ +.+.++...+..+..+|++|..+|+.+....++++|++.+...+-.. ..+...++
T Consensus 90 ~Rt~~~ai~~YkLAll~~~-~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQ-IKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCHHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 3467889999988888754 44667778899999999999999999999999999999988765322 23456788
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 995 INVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 995 ~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
+.+|.++.+.|++++|.+||.+++..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 99999999999999999999998865
No 219
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.031 Score=64.39 Aligned_cols=158 Identities=17% Similarity=0.190 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
...++-+..++...|.|.-.+.++.+.++. +.+.-......||.+.++.||.+.|..|+++.-....++-+.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~- 248 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL- 248 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc-
Confidence 456677888999999999999999998874 234455667889999999999999999999776555444333
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRL 1024 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~ 1024 (1822)
........+.+.+|..+++|..|...|.+++.. ++..+.+.+|-|.|+..+|+...|++.++.++.+.
T Consensus 249 -q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--- 316 (366)
T KOG2796|consen 249 -QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--- 316 (366)
T ss_pred -chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC---
Confidence 234567788999999999999999998887754 45667788999999999999999999999888763
Q ss_pred hCCCcHHHHHHHHHHHHHHH
Q 000230 1025 LGADHIQTAASYHAIAIALS 1044 (1822)
Q Consensus 1025 ~G~dhp~tA~~l~nLA~~y~ 1044 (1822)
+.+...-...+||-.+|.
T Consensus 317 --P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 317 --PRHYLHESVLFNLTTMYE 334 (366)
T ss_pred --CccchhhhHHHHHHHHHH
Confidence 333334445556665554
No 220
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.51 E-value=0.0064 Score=56.20 Aligned_cols=54 Identities=28% Similarity=0.337 Sum_probs=47.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 917 LYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 917 y~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
++..|+|++|+.+|++++.. +|+...++..||.+|..+|++++|..++.+++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35789999999999999987 5778889999999999999999999999998765
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.50 E-value=0.078 Score=56.88 Aligned_cols=112 Identities=22% Similarity=0.218 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCc--------------hhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYH--------------RMTAGAYSLLAVVLYHTGDFNQATIYQQK 932 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dh--------------p~~a~al~nLA~ly~~lGd~eeAle~~qk 932 (1822)
.+...|......|+...++..+++++.+++--+-++. .....++..++..+...|++++|+.++++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3445577777889999999999999998764332221 12345677788899999999999999999
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 933 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPS 986 (1822)
Q Consensus 933 AL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~d 986 (1822)
++.+ +|..-.++..|-.+|..+|++.+|++.|++....+..-+|..
T Consensus 88 ~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 88 ALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 9998 678888999999999999999999999999999988777654
No 222
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.43 E-value=0.067 Score=68.75 Aligned_cols=135 Identities=19% Similarity=0.025 Sum_probs=105.2
Q ss_pred cCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000230 878 KGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 957 (1822)
Q Consensus 878 ~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~ 957 (1822)
....+.|.+++...+.. +|+-+..+...|+++...|+.++|++.+++|+...... ..-...+++.+|.
T Consensus 246 ~~~~~~a~~lL~~~~~~--------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w 313 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAW 313 (468)
T ss_pred CCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHH
Confidence 44566777777777665 57777888999999999999999999999988543221 1123467899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHhhCCCcH
Q 000230 958 FYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-------HVALRYLHEALKCNQRLLGADHI 1030 (1822)
Q Consensus 958 iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~-------eeAl~~leeALei~~~~~G~dhp 1030 (1822)
++..+.+|++|..++.+.++. +....+...+..|.+|...|+. ++|.++|.++-....+..|...|
T Consensus 314 ~~~~~~~w~~A~~~f~~L~~~-------s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 314 CHMFQHDWEEAAEYFLRLLKE-------SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred HHHHHchHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 999999999999999888764 3445566778889999999999 88888888888877776665554
Q ss_pred H
Q 000230 1031 Q 1031 (1822)
Q Consensus 1031 ~ 1031 (1822)
.
T Consensus 387 ~ 387 (468)
T PF10300_consen 387 L 387 (468)
T ss_pred h
Confidence 3
No 223
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.41 E-value=0.1 Score=58.86 Aligned_cols=205 Identities=13% Similarity=0.014 Sum_probs=126.3
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000230 903 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLT 982 (1822)
Q Consensus 903 hp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i 982 (1822)
..+.+..++..|..|-..|-+.-|.-.|.+++.+ .|....+++.||.++...|+|+.|.+.|...+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 3456778888999999999999999999999998 5888999999999999999999999999998887
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 983 CGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 983 ~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
+|..-.+..|.|..+.--|+|+.|.+-+.+-.+- .+++|..+.-++ +-...-+..+|...+.+-.+-
T Consensus 129 ----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~LWLY----l~E~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 129 ----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSLWLY----LNEQKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred ----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHHHHH----HHHhhCCHHHHHHHHHHHHHh
Confidence 4555667889999999999999998766543321 244554432221 112334566665544333221
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCchhhhccccccHHHHH-HHHcCCCHHHHHHHHHHHHHH
Q 000230 1063 LQAKLGSEDLRTQDAAAWLEYFESKALEQQEAARNGTPKPDASISSKGHLSVSDLL-DYIAPDTDSKARDAQRKARAK 1139 (1822)
Q Consensus 1063 ~k~~LG~dhp~t~~a~~~L~~l~qqAl~~qeAl~~g~~~p~~~~a~~~~lSv~eLl-~yi~~Gd~ekA~~~~~KAL~i 1139 (1822)
+..+..-+--..-.|..+..+.+ ++++..+..........+.. +.--++ .|.+.|+..+|..+|+-|+.-
T Consensus 196 ----~d~e~WG~~iV~~yLgkiS~e~l--~~~~~a~a~~n~~~Ae~LTE-tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 196 ----SDKEQWGWNIVEFYLGKISEETL--MERLKADATDNTSLAEHLTE-TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred ----ccHhhhhHHHHHHHHhhccHHHH--HHHHHhhccchHHHHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11111111122223333322211 12221221111100000000 111122 577889999999999887753
No 224
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.39 E-value=0.62 Score=56.72 Aligned_cols=180 Identities=16% Similarity=-0.035 Sum_probs=122.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000230 869 LESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 947 (1822)
Q Consensus 869 ~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~-a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ 947 (1822)
+.-++..+..|+|+.|..-|+-.+.- |++ ..-+..|-.-...+|+++.|..|..+|.... |.
T Consensus 124 lLeAQaal~eG~~~~Ar~kfeAMl~d---------PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~ 186 (531)
T COG3898 124 LLEAQAALLEGDYEDARKKFEAMLDD---------PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQ 186 (531)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhcC---------hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cC
Confidence 34578888999999999999887653 333 2223344444567899999999999988763 45
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Q 000230 948 TMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPN--TAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLL 1025 (1822)
Q Consensus 948 ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~--~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~ 1025 (1822)
...+...+=...+..|+|+.|+++++...... +.+.+--+ .+..+..-+..+. .-+...|...-.+++++.
T Consensus 187 l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~---- 259 (531)
T COG3898 187 LPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLA---- 259 (531)
T ss_pred CchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcC----
Confidence 55555555556678999999999998877653 23333222 2223333333332 345777888888887763
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000230 1026 GADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLE 1082 (1822)
Q Consensus 1026 G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~ 1082 (1822)
++.+-.-..-+.+|+..|+..++-..++.+.+. +-||++...+..+.
T Consensus 260 ----pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia~lY~~ar 306 (531)
T COG3898 260 ----PDLVPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIALLYVRAR 306 (531)
T ss_pred ----CccchHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHHHHHHHhc
Confidence 333334444588999999999999999988874 56999888776553
No 225
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.33 E-value=0.026 Score=65.08 Aligned_cols=103 Identities=19% Similarity=0.125 Sum_probs=85.3
Q ss_pred HHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhhH
Q 000230 875 SLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD-----HPDTM 949 (1822)
Q Consensus 875 ~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d-----hp~ta 949 (1822)
+.....+++|++.|.-||-.. ++.+..+...|.++..+|++|..+|+.+....++++|+..+++.+-.. ..+..
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~-~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCA-QIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 334557889999999888664 344567778999999999999999999999999999999998876432 23456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 950 KSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 950 ~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
..++.+|.++++.|++++|+++|.+++..
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 78899999999999999999999998765
No 226
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.32 E-value=0.26 Score=57.62 Aligned_cols=145 Identities=21% Similarity=0.191 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 906 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGP 985 (1822)
Q Consensus 906 ~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~ 985 (1822)
-+.-+++-|......|+|++|+.+|+...... +..|..-.+...|+.+++..++|++|+.+..+-+.+. +
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P 102 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----P 102 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----C
Confidence 35567888888899999999999998876431 3345567889999999999999999999999887763 6
Q ss_pred CChhHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHhhCCCcHH--------------HHHHHHHHHHHHHHc
Q 000230 986 SHPNTAATYINVAMMEEGL-----GNVHVALRYLHEALKCNQRLLGADHIQ--------------TAASYHAIAIALSLM 1046 (1822)
Q Consensus 986 dhP~~a~al~nLA~iy~~l-----Gd~eeAl~~leeALei~~~~~G~dhp~--------------tA~~l~nLA~~y~~l 1046 (1822)
.||++..+++..|.++... .+...+...+...-++..+. +++.. .+.--..+|..|...
T Consensus 103 ~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry--PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr 180 (254)
T COG4105 103 THPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY--PNSRYAPDAKARIVKLNDALAGHEMAIARYYLKR 180 (254)
T ss_pred CCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999887643 22233333333222222222 22221 222234577888899
Q ss_pred cCHHHHHHHHHHHHHH
Q 000230 1047 EAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1047 Gd~eeAi~~lekAL~I 1062 (1822)
|.+-.|+..+++.++-
T Consensus 181 ~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 181 GAYVAAINRFEEVLEN 196 (254)
T ss_pred cChHHHHHHHHHHHhc
Confidence 9999999988888774
No 227
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.31 E-value=0.091 Score=56.35 Aligned_cols=111 Identities=21% Similarity=0.125 Sum_probs=82.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000230 952 YGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPS--------------HPNTAATYINVAMMEEGLGNVHVALRYLHEA 1017 (1822)
Q Consensus 952 y~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~d--------------hP~~a~al~nLA~iy~~lGd~eeAl~~leeA 1017 (1822)
+...|......++...++..+++++.+++.-+-++ +.....++..++..+...|++++|+.+++++
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34445566677888899999999998876432211 1123456778888899999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCC
Q 000230 1018 LKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSE 1070 (1822)
Q Consensus 1018 Lei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~d 1070 (1822)
+.+ +|..-.++..|-.+|..+|+..+|+.+|++....+.+.+|..
T Consensus 89 l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 89 LAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred Hhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 987 456667788899999999999999999999999999999865
No 228
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.29 E-value=0.4 Score=58.60 Aligned_cols=212 Identities=18% Similarity=0.158 Sum_probs=128.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhH-HHHHHHHHHHHHHcCCHHHHHHHH----------------
Q 000230 868 LLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMT-AGAYSLLAVVLYHTGDFNQATIYQ---------------- 930 (1822)
Q Consensus 868 L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~-a~al~nLA~ly~~lGd~eeAle~~---------------- 930 (1822)
.+..+...+..|+++++..++.++...+...+....... ..+|..|..+ ..+.+.+++..+.
T Consensus 32 ~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l-q~L~Elee~~~~~~~~~~~~~~~~~l~~~ 110 (352)
T PF02259_consen 32 SFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL-QQLVELEEIIELKSNLSQNPQDLKSLLKR 110 (352)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-hHHHHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 344445555788888888888888776554433322222 2222222222 2223334444333
Q ss_pred ---------------HHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000230 931 ---------------QKALDINERELG--LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAAT 993 (1822)
Q Consensus 931 ---------------qkAL~i~er~lG--~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~a 993 (1822)
+..+.+..-++. ......+..+..++.++...|+++.|..++.++...... .+.....+
T Consensus 111 W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~----~~~~~~~v 186 (352)
T PF02259_consen 111 WRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS----SESLLPRV 186 (352)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc----ccCCCcch
Confidence 111222111222 113456678899999999999999999999887664211 11113445
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHh-------------------------hCCCcHHHHHHHHHHHHHHHHc-
Q 000230 994 YINVAMMEEGLGNVHVALRYLHEALK-CNQRL-------------------------LGADHIQTAASYHAIAIALSLM- 1046 (1822)
Q Consensus 994 l~nLA~iy~~lGd~eeAl~~leeALe-i~~~~-------------------------~G~dhp~tA~~l~nLA~~y~~l- 1046 (1822)
....+.++...|+..+|+..+++.+. ..... ........+.++..+|.....+
T Consensus 187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~ 266 (352)
T PF02259_consen 187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY 266 (352)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc
Confidence 66778999999999999999999888 32221 1112345677888888888887
Q ss_pred -----cCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 000230 1047 -----EAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQ 1092 (1822)
Q Consensus 1047 -----Gd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~q 1092 (1822)
+++++++.+|++|.++ ++....+...++.+..+.+...
T Consensus 267 ~~~~~~~~~~~~~~~~~a~~~--------~~~~~k~~~~~a~~~~~~~~~~ 309 (352)
T PF02259_consen 267 SKLSSESSDEILKYYKEATKL--------DPSWEKAWHSWALFNDKLLESD 309 (352)
T ss_pred cccccccHHHHHHHHHHHHHh--------ChhHHHHHHHHHHHHHHHHHhh
Confidence 8888888888888875 4444445555555554444433
No 229
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.24 E-value=0.86 Score=56.66 Aligned_cols=234 Identities=19% Similarity=0.196 Sum_probs=148.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000230 868 LLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 947 (1822)
Q Consensus 868 L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ 947 (1822)
++..+.+-+...+...|..++.+|+.++ |.+-..++..-.+--.+|+...|.+.|++-+.. .|+
T Consensus 110 WlkYae~Emknk~vNhARNv~dRAvt~l--------PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--------~P~ 173 (677)
T KOG1915|consen 110 WLKYAEFEMKNKQVNHARNVWDRAVTIL--------PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--------EPD 173 (677)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHhc--------chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--------CCc
Confidence 4555666777788889999999999873 556667777767777789999999988887765 222
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCC
Q 000230 948 TMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGA 1027 (1822)
Q Consensus 948 ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~ 1027 (1822)
-++++..-.+-.+...++.|...|++-+- -||.+ ..+...|..-...|+...|...|++|++.. |.
T Consensus 174 -eqaW~sfI~fElRykeieraR~IYerfV~--------~HP~v-~~wikyarFE~k~g~~~~aR~VyerAie~~----~~ 239 (677)
T KOG1915|consen 174 -EQAWLSFIKFELRYKEIERARSIYERFVL--------VHPKV-SNWIKYARFEEKHGNVALARSVYERAIEFL----GD 239 (677)
T ss_pred -HHHHHHHHHHHHHhhHHHHHHHHHHHHhe--------ecccH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHh----hh
Confidence 24555556666677778888888877653 37876 456788999999999999999999999874 43
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH---HHHHcCCCC---
Q 000230 1028 DHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQ---EAARNGTPK--- 1101 (1822)
Q Consensus 1028 dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~q---eAl~~g~~~--- 1101 (1822)
+ ......+...|..-..+..++.|...|+-|+... ..+ ++.+....+-.++.+-+... .++. +...
T Consensus 240 d-~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~----pk~--raeeL~k~~~~fEKqfGd~~gIEd~Iv-~KRk~qY 311 (677)
T KOG1915|consen 240 D-EEAEILFVAFAEFEERQKEYERARFIYKYALDHI----PKG--RAEELYKKYTAFEKQFGDKEGIEDAIV-GKRKFQY 311 (677)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Ccc--cHHHHHHHHHHHHHHhcchhhhHHHHh-hhhhhHH
Confidence 3 3445566666777777778888877777766532 111 22222222322222221110 1110 0000
Q ss_pred -CchhhhccccccHHHHHHHHcC-CCHHHHHHHHHHHHHH
Q 000230 1102 -PDASISSKGHLSVSDLLDYIAP-DTDSKARDAQRKARAK 1139 (1822)
Q Consensus 1102 -p~~~~a~~~~lSv~eLl~yi~~-Gd~ekA~~~~~KAL~i 1139 (1822)
..+.....+--+|-+.+.+++. |+.+.-++.|++|+.-
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 0000111122267666766665 8888888888888753
No 230
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=0.39 Score=56.19 Aligned_cols=138 Identities=17% Similarity=0.127 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 909 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHP 988 (1822)
Q Consensus 909 al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP 988 (1822)
.+..-|.+|.+-|++++|+....+...+ .++..--.++.++.+++-|...++++.++...
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------- 169 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED------- 169 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-------
Confidence 3444567788888999888877663222 12222234566777788888877777665321
Q ss_pred hHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 000230 989 NTAATYINVAMMEEGL----GNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQ 1064 (1822)
Q Consensus 989 ~~a~al~nLA~iy~~l----Gd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k 1064 (1822)
.++..||..|... +.+..|.-+| +...+.. +-+..++.-+|.++..+|+|++|...++.|+.-.
T Consensus 170 ---~tLtQLA~awv~la~ggek~qdAfyif-------eE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 170 ---ATLTQLAQAWVKLATGGEKIQDAFYIF-------EELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred ---HHHHHHHHHHHHHhccchhhhhHHHHH-------HHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 2455666666542 2344444444 4443322 3355677888999999999999999999998742
Q ss_pred HHhCCCCHHHHHHHHHHH
Q 000230 1065 AKLGSEDLRTQDAAAWLE 1082 (1822)
Q Consensus 1065 ~~LG~dhp~t~~a~~~L~ 1082 (1822)
..+|++..-+.-++
T Consensus 238 ----~~dpetL~Nliv~a 251 (299)
T KOG3081|consen 238 ----AKDPETLANLIVLA 251 (299)
T ss_pred ----CCCHHHHHHHHHHH
Confidence 34555544444333
No 231
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.16 E-value=0.88 Score=60.66 Aligned_cols=154 Identities=18% Similarity=0.129 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000230 904 RMTAGAYSLLAVVLY-HTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLT 982 (1822)
Q Consensus 904 p~~a~al~nLA~ly~-~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i 982 (1822)
..-+.++..||.+|+ ...++++|..++.|++.++++ .+-. .....+...|+.+|...+... |+.+++++++.++..
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~-d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLT-DLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchH-HHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 345788889999987 799999999999999999876 1211 123455667799999998888 999999999998762
Q ss_pred cCCCChhHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 983 CGPSHPNTAATYINV-AMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 983 ~G~dhP~~a~al~nL-A~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
.|.....++.-+ ...+...+++..|++.++......... | +......+....|.++...+..+++++..+++..
T Consensus 133 ---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-~-d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 133 ---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-G-DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred ---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-C-CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 233333333333 222323389999999999998876532 2 2223344445556677777878888888888876
Q ss_pred HHHH
Q 000230 1062 ILQA 1065 (1822)
Q Consensus 1062 I~k~ 1065 (1822)
..+.
T Consensus 208 ~~~~ 211 (608)
T PF10345_consen 208 QARS 211 (608)
T ss_pred HHhh
Confidence 6554
No 232
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.018 Score=65.65 Aligned_cols=99 Identities=15% Similarity=0.143 Sum_probs=88.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHH
Q 000230 952 YGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQ 1031 (1822)
Q Consensus 952 y~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~ 1031 (1822)
+..-|..|+.-.+|..|+.+|.+|+.+ .|..+..+.|-|.++.++.+|+.+..-.++|+++ .++
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~~N 76 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------DPN 76 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------ChH
Confidence 344566777788899999999999876 5888888999999999999999999999999987 477
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Q 000230 1032 TAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAK 1066 (1822)
Q Consensus 1032 tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~ 1066 (1822)
.+..++-||.++.....|.+|+..+++|+.+++..
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999988764
No 233
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.10 E-value=0.25 Score=63.05 Aligned_cols=146 Identities=15% Similarity=0.041 Sum_probs=92.1
Q ss_pred HHhHHHHhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH
Q 000230 850 SMVPVYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIY 929 (1822)
Q Consensus 850 ~alpvvK~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~ 929 (1822)
.++.++..+.++......+-.++.-|...|+|+.|.++|.++-.. ..--..|.+.|+|.+|..+
T Consensus 750 kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~----------------~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 750 KAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLF----------------KDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchh----------------HHHHHHHhccccHHHHHHH
Confidence 344444444444444455666788888888888888888776321 1223456677787777655
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhc---------CCCChh-HHHH
Q 000230 930 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYV------NRALYLLHLTC---------GPSHPN-TAAT 993 (1822)
Q Consensus 930 ~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~------~rAL~l~~~i~---------G~dhP~-~a~a 993 (1822)
..+ ..|+ ..++..|..-|.-+-..|+|.+|.++| .+|+.++.+.. +..|++ +..+
T Consensus 814 a~e-------~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt 884 (1636)
T KOG3616|consen 814 AEE-------CHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDT 884 (1636)
T ss_pred HHH-------hcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHH
Confidence 443 3333 346677777788888888888887776 34555554421 222443 2345
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 994 YINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 994 l~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
...+|.-|...|++..|...|.+|-+.
T Consensus 885 ~~~f~~e~e~~g~lkaae~~flea~d~ 911 (1636)
T KOG3616|consen 885 HKHFAKELEAEGDLKAAEEHFLEAGDF 911 (1636)
T ss_pred HHHHHHHHHhccChhHHHHHHHhhhhH
Confidence 667788888888888888877766543
No 234
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.89 E-value=0.55 Score=58.22 Aligned_cols=154 Identities=13% Similarity=0.027 Sum_probs=95.3
Q ss_pred cCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000230 878 KGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 957 (1822)
Q Consensus 878 ~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~ 957 (1822)
...|..|...+.++|...++.++...-.......+|=..|....+|+.-+.+.+..-.+ -..+-+.+..+...+|.
T Consensus 112 re~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yaf 187 (374)
T PF13281_consen 112 RERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAF 187 (374)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHH
Confidence 34455556666777776666655433334456677778899999999888877654333 11122345556778888
Q ss_pred HHHH---cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhh
Q 000230 958 FYYR---LQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGL---------GNVHVALRYLHEALKCNQRLL 1025 (1822)
Q Consensus 958 iy~~---lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~l---------Gd~eeAl~~leeALei~~~~~ 1025 (1822)
++.+ .|+.++|+..+..++.-. +...| .++.-+|.+|..+ ..+++|+.+|.++.++..
T Consensus 188 ALnRrn~~gdre~Al~il~~~l~~~----~~~~~---d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~--- 257 (374)
T PF13281_consen 188 ALNRRNKPGDREKALQILLPVLESD----ENPDP---DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP--- 257 (374)
T ss_pred HHhhcccCCCHHHHHHHHHHHHhcc----CCCCh---HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc---
Confidence 8888 899999999988875432 12233 4567778877542 234556666666555421
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHH
Q 000230 1026 GADHIQTAASYHAIAIALSLMEAYSL 1051 (1822)
Q Consensus 1026 G~dhp~tA~~l~nLA~~y~~lGd~ee 1051 (1822)
....-.|+|.++...|...+
T Consensus 258 ------~~Y~GIN~AtLL~~~g~~~~ 277 (374)
T PF13281_consen 258 ------DYYSGINAATLLMLAGHDFE 277 (374)
T ss_pred ------cccchHHHHHHHHHcCCccc
Confidence 22334566777777775433
No 235
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.82 E-value=0.15 Score=63.91 Aligned_cols=131 Identities=18% Similarity=0.142 Sum_probs=101.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh---
Q 000230 912 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHP--- 988 (1822)
Q Consensus 912 nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP--- 988 (1822)
.+-.-.++..+...-+.+.++||++. |+.+.+|..||.= ...-..+|+++|++|++..+..+|.+..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~ 242 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQH 242 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhc
Confidence 34444566778899999999999994 6778888887753 2345789999999999998887775310
Q ss_pred -----------h---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHH
Q 000230 989 -----------N---TAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQ 1054 (1822)
Q Consensus 989 -----------~---~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~ 1054 (1822)
+ ...+...||+++.++|+.++|++.+++.++..- ..+...++.+|..++..++.|.++..
T Consensus 243 ~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 243 HGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred ccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 0 134567899999999999999999999887531 12355689999999999999999987
Q ss_pred HHHH
Q 000230 1055 HEQT 1058 (1822)
Q Consensus 1055 ~lek 1058 (1822)
.+.+
T Consensus 317 lL~k 320 (539)
T PF04184_consen 317 LLAK 320 (539)
T ss_pred HHHH
Confidence 7765
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.33 Score=57.71 Aligned_cols=146 Identities=18% Similarity=0.220 Sum_probs=100.7
Q ss_pred hhhhhhhccccccccCCCCCcCc----HhhHHHHhHHHHhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhh
Q 000230 822 LSHKVGLELVPRDYDMDSESPFR----KSDIISMVPVYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMS 897 (1822)
Q Consensus 822 l~~k~GLql~~r~Y~f~~a~pf~----~eDI~~alpvvK~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~ 897 (1822)
+..+.|++-....|-|....|.. ......+..++.++... ..+..+..+..+...|++.+|...|..++..
T Consensus 89 vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~--~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~--- 163 (304)
T COG3118 89 VAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA--EEEEALAEAKELIEAEDFGEAAPLLKQALQA--- 163 (304)
T ss_pred HHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh--HHHHHHHHhhhhhhccchhhHHHHHHHHHHh---
Confidence 45567888888888887655421 01111222334444433 3445566788899999999999999999987
Q ss_pred ccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HHHHHHHhcCC-----------CChhhHHH
Q 000230 898 VCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK---------------ALDINERELGL-----------DHPDTMKS 951 (1822)
Q Consensus 898 i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qk---------------AL~i~er~lG~-----------dhp~ta~a 951 (1822)
.++...+...|+.+|...|+.+.|...+.. .++..++.-.. .+|+...+
T Consensus 164 -----~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~a 238 (304)
T COG3118 164 -----APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEA 238 (304)
T ss_pred -----CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHH
Confidence 345567788899999999999888766543 23444333222 25667778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000230 952 YGDLAVFYYRLQHTELALKYVNRALY 977 (1822)
Q Consensus 952 y~nLA~iy~~lG~~eeAl~~~~rAL~ 977 (1822)
.+.||..|...|+++.|++.+-..+.
T Consensus 239 a~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 239 ALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 89999999999999999987755443
No 237
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.79 E-value=0.16 Score=57.04 Aligned_cols=124 Identities=19% Similarity=0.147 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH
Q 000230 930 QQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 1009 (1822)
Q Consensus 930 ~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~ee 1009 (1822)
++.-+.-++..+| ...+..++..+|.+|.+.|++++|++.|.++++.+. .--..+..+.++-.+....+++..
T Consensus 19 Le~elk~~~~n~~--kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-----~~~~~id~~l~~irv~i~~~d~~~ 91 (177)
T PF10602_consen 19 LEAELKDAKSNLG--KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCT-----SPGHKIDMCLNVIRVAIFFGDWSH 91 (177)
T ss_pred HHHHHHHHHhccc--hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-----CHHHHHHHHHHHHHHHHHhCCHHH
Confidence 3344444443333 356778999999999999999999999999877642 223467778888899999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1010 ALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1010 Al~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
...++.+|-.+... |.+-.........-|..+...++|..|.+.|-.+..-
T Consensus 92 v~~~i~ka~~~~~~--~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 92 VEKYIEKAESLIEK--GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 99999999888765 2222223334444577777889999999999777653
No 238
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.64 E-value=0.98 Score=54.24 Aligned_cols=78 Identities=23% Similarity=0.210 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHcC-ChHHHHHHHHhhhhhhhhc--cCCCchh----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 864 DGRTLLESSKTSLDKG-KLEDAVNYGSKALSKLMSV--CGPYHRM----TAGAYSLLAVVLYHTGDFNQATIYQQKALDI 936 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G-~yeeAie~~~eAL~l~~~i--~G~dhp~----~a~al~nLA~ly~~lGd~eeAle~~qkAL~i 936 (1822)
.++.+|+.|...+..+ ++++|..++++|++++... ....+++ ...++..|+.+|...+.++.... ..+++..
T Consensus 34 La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~ 112 (278)
T PF08631_consen 34 LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEK-ALNALRL 112 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHH
Confidence 4678999999999999 9999999999999997551 1123333 46788999999999988754333 4555555
Q ss_pred HHHhcC
Q 000230 937 NERELG 942 (1822)
Q Consensus 937 ~er~lG 942 (1822)
.+.-+|
T Consensus 113 l~~e~~ 118 (278)
T PF08631_consen 113 LESEYG 118 (278)
T ss_pred HHHhCC
Confidence 554433
No 239
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.13 Score=59.48 Aligned_cols=139 Identities=14% Similarity=0.131 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 907 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPS 986 (1822)
Q Consensus 907 a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~d 986 (1822)
....+.++.++.-+|+|.-.+..+.+.+.. +.+.-......||.+.++.|+.+.|..|++++-+....+.+-
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~- 248 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL- 248 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc-
Confidence 346778888999999999999999888773 334555567789999999999999999999877665554332
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 987 HPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 987 hP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
........|.+.+|...++|..|...|.+++.. ++..+.+-++-|.|+.-+|+...|+..++.++++
T Consensus 249 -q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 249 -QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred -chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 223456788899999999999999999888764 4556677888999999999999999999888775
No 240
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.55 E-value=0.043 Score=67.61 Aligned_cols=155 Identities=15% Similarity=0.108 Sum_probs=106.5
Q ss_pred HHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh--hHH
Q 000230 873 KTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD--TMK 950 (1822)
Q Consensus 873 ~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~--ta~ 950 (1822)
+.|++..++..+..-...++.+. .+.+.++..-+..++.+|+|.+|..++...-...+ .-|.--|+ ...
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a--------~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~-~g~~~T~q~~~ci 284 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIA--------QDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKE-AGGTITPQLSSCI 284 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhc--------CCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccc-cCccccchhhhhe
Confidence 34455555666655555555442 14456777889999999999999887755432211 11111222 455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHHhc-C--CC------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 951 SYGDLAVFYYRLQHTELALKYVNRALY-LLHLTC-G--PS------HPNTAATYINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 951 ay~nLA~iy~~lG~~eeAl~~~~rAL~-l~~~i~-G--~d------hP~~a~al~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
.++|||.+++++|.|.-+..+|.+||+ .+.++- | +. .-....+++|+|..|...|+.-.|.++|.+|...
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 678999999999999999999999996 443321 2 00 1123467899999999999999999999999998
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHHH
Q 000230 1021 NQRLLGADHIQTAASYHAIAIALS 1044 (1822)
Q Consensus 1021 ~~~~~G~dhp~tA~~l~nLA~~y~ 1044 (1822)
+.+. -.+|..||.++.
T Consensus 365 fh~n--------PrlWLRlAEcCi 380 (696)
T KOG2471|consen 365 FHRN--------PRLWLRLAECCI 380 (696)
T ss_pred HhcC--------cHHHHHHHHHHH
Confidence 7432 246777887765
No 241
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.056 Score=64.36 Aligned_cols=105 Identities=20% Similarity=0.250 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
..|..+-+-|+-|+...+|..|+..|.++|..- + .+-.-.+.+|.|.|.+.+.+|+|..|+.-+.+|+.+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k---c-~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------ 148 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK---C-ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------ 148 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc---C-CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 357888889999999999999999999999752 2 233345778999999999999999999999999987
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLL 979 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~ 979 (1822)
.|..+.+|+.=|.+++.+.++.+|..+++..+.+.
T Consensus 149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 57889999999999999999999999998887664
No 242
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.55 E-value=2.2 Score=55.00 Aligned_cols=108 Identities=15% Similarity=0.080 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhc--------cCC------CchhHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSV--------CGP------YHRMTAGAYSLLAVVLYHTGDFNQATIYQ 930 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i--------~G~------dhp~~a~al~nLA~ly~~lGd~eeAle~~ 930 (1822)
..++.++|..+.....|++|.+||.+.-..-.++ +|. .-|+....+-.||..+...|.-++|++.|
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 4556677777777777777777776643221111 111 11222223444555555555555555543
Q ss_pred H-------------------HHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000230 931 Q-------------------KALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRA 975 (1822)
Q Consensus 931 q-------------------kAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rA 975 (1822)
- +|+++.++. .-|++.......+.-+..-+++-+|++.+++|
T Consensus 876 Lr~s~pkaAv~tCv~LnQW~~avelaq~~---~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 876 LRRSLPKAAVHTCVELNQWGEAVELAQRF---QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HhccCcHHHHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 2 344444432 22444444455566667778888888888877
No 243
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.12 Score=59.32 Aligned_cols=105 Identities=15% Similarity=0.090 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCC---ch-------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000230 866 RTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPY---HR-------MTAGAYSLLAVVLYHTGDFNQATIYQQKALD 935 (1822)
Q Consensus 866 ~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~d---hp-------~~a~al~nLA~ly~~lGd~eeAle~~qkAL~ 935 (1822)
.++...|+-++.+|+|.+|...|++|+...+++.-.. .| .+.-.+.|++.|+...|+|-++++.+...|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 3567789999999999999999999998776553222 22 2334678999999999999999999988877
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 936 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 936 i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
. ||....+|+.-|.+....=+..+|..-+..+|++
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 5 7889999999999999999999999999999886
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=0.25 Score=58.79 Aligned_cols=164 Identities=14% Similarity=-0.010 Sum_probs=119.1
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000230 871 SSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 950 (1822)
Q Consensus 871 lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ 950 (1822)
-+.+++..|++.+|-..+.+.|.- +|.-..++..--.+++.+|+...-...+++.+... ..|-|-...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sY 176 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSY 176 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHH
Confidence 345667788888888888887764 56655666666677888888877777776665432 234555566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcH
Q 000230 951 SYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHI 1030 (1822)
Q Consensus 951 ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp 1030 (1822)
...-+|..+...|-|++|.+..++++++. +.-..+...++.++...|++.++.++..+.-..++. ...
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s~m 244 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----SWM 244 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----hhH
Confidence 66677888889999999999999998873 444566778889999999999999998877665542 123
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 000230 1031 QTAASYHAIAIALSLMEAYSLSVQHEQT 1058 (1822)
Q Consensus 1031 ~tA~~l~nLA~~y~~lGd~eeAi~~lek 1058 (1822)
....-|...|..|..-+.|+.|+..|..
T Consensus 245 lasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 245 LASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 3344455677777788888888888764
No 245
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.36 E-value=0.25 Score=55.45 Aligned_cols=110 Identities=14% Similarity=0.068 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000230 904 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTC 983 (1822)
Q Consensus 904 p~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~ 983 (1822)
..+..++..+|..|...|++++|+..|.++...+ ...-..+..+.++-.+....+++.....++.+|-.+...
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-- 105 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-- 105 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--
Confidence 4677889999999999999999999999987753 223457788899999999999999999999999988766
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 984 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 984 G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
|.+..........-|..+...++|..|.+.|-.++.-
T Consensus 106 ~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 106 GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 2222223334455677778889999999999887654
No 246
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.28 E-value=1.3 Score=52.99 Aligned_cols=145 Identities=17% Similarity=0.113 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHc----CChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 000230 865 GRTLLESSKTSLDK----GKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYH----TGDFNQATIYQQKALDI 936 (1822)
Q Consensus 865 A~~L~~lG~~~~~~----G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~----lGd~eeAle~~qkAL~i 936 (1822)
+.....++..|... .++.+|+.+|+.+... ....+.++||.+|.. ..|+.+|..+|++|...
T Consensus 73 ~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~ 142 (292)
T COG0790 73 AAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL 142 (292)
T ss_pred hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc
Confidence 35666667666543 3478899998855543 345577889999887 45899999999999875
Q ss_pred HHHhcCCCChhhHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CC
Q 000230 937 NERELGLDHPDTMKSYGDLAVFYYRLQ-------HTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEG----LG 1005 (1822)
Q Consensus 937 ~er~lG~dhp~ta~ay~nLA~iy~~lG-------~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~----lG 1005 (1822)
| ++.-..+.++||.+|..-. +...|+.+|.++-... + ..+..+||.+|.. ..
T Consensus 143 -----g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-------~---~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 143 -----G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-------N---PDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred -----C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-------C---HHHHHHHHHHHHcCCCCCc
Confidence 2 2222455788888887642 2235677776665542 3 4567888988855 34
Q ss_pred CHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHcc
Q 000230 1006 NVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLME 1047 (1822)
Q Consensus 1006 d~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lG 1047 (1822)
++.+|..||.+|-+.- + ....++++ ++...|
T Consensus 206 d~~~A~~wy~~Aa~~g-------~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 206 DLKKAFRWYKKAAEQG-------D---GAACYNLG-LMYLNG 236 (292)
T ss_pred CHHHHHHHHHHHHHCC-------C---HHHHHHHH-HHHhcC
Confidence 8899999999997741 2 45667778 665555
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.84 Score=54.62 Aligned_cols=128 Identities=17% Similarity=0.027 Sum_probs=102.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000230 914 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAAT 993 (1822)
Q Consensus 914 A~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~a 993 (1822)
+.+++..|++.+|.....+.|.- +|....++..--.+++.+|+...-...+++.+..+ .++-|-....
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sYv 177 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSYV 177 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHHH
Confidence 44566788988888888887763 67777777777788888999988888888777654 3455666777
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 994 YINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 994 l~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
.-.++..+...|-|++|.+...+|+++. +....+.+.+|.++...|+++++.+++++.-.
T Consensus 178 ~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted 237 (491)
T KOG2610|consen 178 HGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTED 237 (491)
T ss_pred HHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhccc
Confidence 7778889999999999999999999884 34566788899999999999999999876543
No 248
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=0.74 Score=51.87 Aligned_cols=100 Identities=13% Similarity=-0.018 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCC
Q 000230 949 MKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGAD 1028 (1822)
Q Consensus 949 a~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~d 1028 (1822)
..+...+|..+...+++++|+..++.++.... |.-....+-.+||.++..+|.+++|+..+...- +
T Consensus 89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-----De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~ 154 (207)
T COG2976 89 VLAALELAKAEVEANNLDKAEAQLKQALAQTK-----DENLKALAALRLARVQLQQKKADAALKTLDTIK---------E 154 (207)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHccch-----hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------c
Confidence 34556788889999999999999999986532 223345566889999999999999988776432 2
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1029 HIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1029 hp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
+...+......|.++..+|+-++|+..|++|++.
T Consensus 155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3345566677899999999999999999999986
No 249
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.04 E-value=3.5 Score=55.38 Aligned_cols=172 Identities=15% Similarity=0.100 Sum_probs=102.6
Q ss_pred ChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--
Q 000230 862 SADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINER-- 939 (1822)
Q Consensus 862 s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er-- 939 (1822)
......+-.+|.+.++.|...+|++.|-+|-. ...|...-.+..+.|.|++-+.|+..|..-.+.
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyikadD-------------ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~ 1167 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKADD-------------PSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY 1167 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhcCC-------------cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc
Confidence 33456677788888899999999988877622 235666667777788888888777666443221
Q ss_pred ---------------------hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000230 940 ---------------------ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVA 998 (1822)
Q Consensus 940 ---------------------~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA 998 (1822)
+.|+++.+ ....|.-++..+.|+.|.-+|.. ..-+..||
T Consensus 1168 id~eLi~AyAkt~rl~elE~fi~gpN~A~----i~~vGdrcf~~~~y~aAkl~y~~----------------vSN~a~La 1227 (1666)
T KOG0985|consen 1168 IDSELIFAYAKTNRLTELEEFIAGPNVAN----IQQVGDRCFEEKMYEAAKLLYSN----------------VSNFAKLA 1227 (1666)
T ss_pred chHHHHHHHHHhchHHHHHHHhcCCCchh----HHHHhHHHhhhhhhHHHHHHHHH----------------hhhHHHHH
Confidence 11222111 12334444445555444433322 22355678
Q ss_pred HHHHHCCCHHHHHHHHHHHHHH--HHH---------------hhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 999 MMEEGLGNVHVALRYLHEALKC--NQR---------------LLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 999 ~iy~~lGd~eeAl~~leeALei--~~~---------------~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
..+..+|+|+.|....++|-.+ ++. +.|-+-.-.+.-+-.|-..|...|-|++-+.+++.++.
T Consensus 1228 ~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1228 STLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 8888999999998888876432 222 12222222233445566677788888877777777665
Q ss_pred HHHHH
Q 000230 1062 ILQAK 1066 (1822)
Q Consensus 1062 I~k~~ 1066 (1822)
+-+..
T Consensus 1308 LERAH 1312 (1666)
T KOG0985|consen 1308 LERAH 1312 (1666)
T ss_pred hhHHH
Confidence 54443
No 250
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.02 E-value=6.5 Score=51.06 Aligned_cols=188 Identities=15% Similarity=0.059 Sum_probs=104.5
Q ss_pred CChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhh----hccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH----
Q 000230 861 SSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLM----SVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQK---- 932 (1822)
Q Consensus 861 ~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~----~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qk---- 932 (1822)
..+..+.+..+|......-.++-|...|-++-...- +.++..|... ...|.+-..-|+|++|...|-.
T Consensus 688 dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~----~q~aei~~~~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 688 DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKE----QQRAEISAFYGEFEEAEKLYLDADRR 763 (1189)
T ss_pred cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHH----HHhHhHhhhhcchhHhhhhhhccchh
Confidence 455566677777777766667777766655432100 0011111111 1233444445666666665532
Q ss_pred --HHHHHHHh------------c--CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HH-------
Q 000230 933 --ALDINERE------------L--GLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYL---------LH------- 980 (1822)
Q Consensus 933 --AL~i~er~------------l--G~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l---------~~------- 980 (1822)
|++++.++ - +.|+.....++.++|..+..+..|++|.+||...-.. .+
T Consensus 764 DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~ 843 (1189)
T KOG2041|consen 764 DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEV 843 (1189)
T ss_pred hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHH
Confidence 22322221 1 2355667789999999999999999999998754322 11
Q ss_pred --HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH-------------------HHHHHHHHhhCCCcHHHHHHHHHH
Q 000230 981 --LTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH-------------------EALKCNQRLLGADHIQTAASYHAI 1039 (1822)
Q Consensus 981 --~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~le-------------------eALei~~~~~G~dhp~tA~~l~nL 1039 (1822)
+.+.++|+ .+-.+|.++...|--++|.+.|. +|.++.++. .-+++.......
T Consensus 844 la~~Lpe~s~----llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~---~l~qv~tliak~ 916 (1189)
T KOG2041|consen 844 LARTLPEDSE----LLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRF---QLPQVQTLIAKQ 916 (1189)
T ss_pred HHHhcCcccc----hHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHH
Confidence 12223332 33445666666666666655553 233333221 234444455555
Q ss_pred HHHHHHccCHHHHHHHHHHH
Q 000230 1040 AIALSLMEAYSLSVQHEQTT 1059 (1822)
Q Consensus 1040 A~~y~~lGd~eeAi~~lekA 1059 (1822)
|.-+...++.-+|++.+++|
T Consensus 917 aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 917 AAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHHHhhcchHHHHHHhhhc
Confidence 66667788888999988887
No 251
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.98 E-value=0.14 Score=63.29 Aligned_cols=139 Identities=17% Similarity=0.183 Sum_probs=98.1
Q ss_pred HHhhhcC-ChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHH--HHHHHHHHHHHcCCHHHHHHHHH
Q 000230 855 YKHVACS-SADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAG--AYSLLAVVLYHTGDFNQATIYQQ 931 (1822)
Q Consensus 855 vK~l~~~-s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~--al~nLA~ly~~lGd~eeAle~~q 931 (1822)
+|++... ...+..++..++.++..|+|.+|..++... .+....-|...|.... .++|||.+++.+|.|.-+.-+|.
T Consensus 229 vK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~ 307 (696)
T KOG2471|consen 229 VKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFL 307 (696)
T ss_pred hhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHH
Confidence 3444332 234667888899999999999999987654 2322222333444444 45799999999999999999999
Q ss_pred HHHH-HHHHhcCC---------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000230 932 KALD-INERELGL---------DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMME 1001 (1822)
Q Consensus 932 kAL~-i~er~lG~---------dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy 1001 (1822)
+||. .+..+-.. ..-....+++|+|..|...|+.-.|.++|.++...+.. +| ..|..||.++
T Consensus 308 kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~-----nP---rlWLRlAEcC 379 (696)
T KOG2471|consen 308 KALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR-----NP---RLWLRLAECC 379 (696)
T ss_pred HHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc-----Cc---HHHHHHHHHH
Confidence 9996 44433211 11123567899999999999999999999999998754 23 3455666665
Q ss_pred H
Q 000230 1002 E 1002 (1822)
Q Consensus 1002 ~ 1002 (1822)
.
T Consensus 380 i 380 (696)
T KOG2471|consen 380 I 380 (696)
T ss_pred H
Confidence 4
No 252
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=94.98 E-value=0.042 Score=52.48 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=59.5
Q ss_pred EEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCccccccc--C-CceEEEeccC
Q 000230 29 TEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSL--K-PCHLTVEEED 101 (1822)
Q Consensus 29 ~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~l--k-~~~L~lVeep 101 (1822)
++|+|+++++..+.|.|.++++|.+|++.|.+... +.-..+.|. ++|..|+|-.-|++. + +++|.||.-|
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~g-i~~~~q~L~--~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLN-VPEEQQRLL--FKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-CCHHHeEEE--ECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 47999999999999999999999999999998864 455778886 599999999989874 4 6999988643
No 253
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.97 E-value=2.9 Score=49.43 Aligned_cols=187 Identities=13% Similarity=0.075 Sum_probs=116.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCC----------chhHHHHHHHHHHHHHHcC--------------CHH
Q 000230 869 LESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPY----------HRMTAGAYSLLAVVLYHTG--------------DFN 924 (1822)
Q Consensus 869 ~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~d----------hp~~a~al~nLA~ly~~lG--------------d~e 924 (1822)
+.+.++++..|+..+|+.-++.-+..+....|.. +...+.-|..+|.+..... -|.
T Consensus 14 ~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy~ 93 (247)
T PF11817_consen 14 FKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYYQ 93 (247)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHHH
Confidence 4567899999999999999999999888877651 1223334455555554432 123
Q ss_pred HHHHHHHHHHHHHHHhcC-CC-------------------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 925 QATIYQQKALDINERELG-LD-------------------HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCG 984 (1822)
Q Consensus 925 eAle~~qkAL~i~er~lG-~d-------------------hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G 984 (1822)
.|..+...--..++.+.. ++ .+.....+..+.............++++.+|+..++...
T Consensus 94 ~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~- 172 (247)
T PF11817_consen 94 IAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYG- 172 (247)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhc-
Confidence 333333222222333210 00 000011111111111122344577889999998887653
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 000230 985 PSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTT 1059 (1822)
Q Consensus 985 ~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekA 1059 (1822)
..-....+...+|.-|...|+|++|+++|+.++..+++- .-......++..|..++..+|+.+..+.+.-+.
T Consensus 173 -~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 173 -QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred -cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 234455667799999999999999999999997776542 234456678888999999999998887765443
No 254
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.90 E-value=0.34 Score=48.53 Aligned_cols=82 Identities=21% Similarity=0.174 Sum_probs=62.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 000230 959 YYRLQHTELALKYVNRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYH 1037 (1822)
Q Consensus 959 y~~lG~~eeAl~~~~rAL~l~~~i~G~d-hP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~ 1037 (1822)
..+.|+|..|++.+.+.++......... ......++.++|.++...|++++|+..+++|+++.++. .+....+.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 4578999999999999999987654333 12345678899999999999999999999999999876 34444444444
Q ss_pred HHHHH
Q 000230 1038 AIAIA 1042 (1822)
Q Consensus 1038 nLA~~ 1042 (1822)
.++.+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 44433
No 255
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.89 E-value=2.4 Score=51.79 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=97.7
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHHH
Q 000230 903 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALY-LLHL 981 (1822)
Q Consensus 903 hp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~-l~~~ 981 (1822)
..+.+.++..++.+.+..|.++.|..++.++..... ..+.....+....+.++...|+..+|+..++..+. ....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~----~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~ 217 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNP----SSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSK 217 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCC----cccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence 446788999999999999999999999988776421 11222456677788999999999999999998887 3322
Q ss_pred hc-------------------------CCCChhHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHhhCCCcH
Q 000230 982 TC-------------------------GPSHPNTAATYINVAMMEEGL------GNVHVALRYLHEALKCNQRLLGADHI 1030 (1822)
Q Consensus 982 i~-------------------------G~dhP~~a~al~nLA~iy~~l------Gd~eeAl~~leeALei~~~~~G~dhp 1030 (1822)
.. .......+.++..+|...... +.+++++.+|.+|+.+. +
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~--------~ 289 (352)
T PF02259_consen 218 NIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD--------P 289 (352)
T ss_pred ccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC--------h
Confidence 10 111234577888888888888 88899999999998874 4
Q ss_pred HHHHHHHHHHHHHHHc
Q 000230 1031 QTAASYHAIAIALSLM 1046 (1822)
Q Consensus 1031 ~tA~~l~nLA~~y~~l 1046 (1822)
....+++.+|..+..+
T Consensus 290 ~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 290 SWEKAWHSWALFNDKL 305 (352)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4455777777776543
No 256
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.84 E-value=8.2 Score=48.52 Aligned_cols=192 Identities=13% Similarity=0.080 Sum_probs=116.3
Q ss_pred hHHHHhHHHHhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHH
Q 000230 847 DIISMVPVYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQA 926 (1822)
Q Consensus 847 DI~~alpvvK~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeA 926 (1822)
+|..+-.++.....-.++-.+++..-..-+.....+.|...|++-+-. ||.+ ..+...|..-...|+..-|
T Consensus 156 Ni~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--------HP~v-~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--------HPKV-SNWIKYARFEEKHGNVALA 226 (677)
T ss_pred ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--------cccH-HHHHHHHHHHHhcCcHHHH
Confidence 444455555555555555555555555566677788888888887654 7665 3556677777888888899
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 000230 927 TIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGN 1006 (1822)
Q Consensus 927 le~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd 1006 (1822)
...|.+|++.+ |. .......+...|.+-..+..++.|.-+|+-||+.+-. + ..-..+-.+-..--+-|+
T Consensus 227 R~VyerAie~~----~~-d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk----~--raeeL~k~~~~fEKqfGd 295 (677)
T KOG1915|consen 227 RSVYERAIEFL----GD-DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPK----G--RAEELYKKYTAFEKQFGD 295 (677)
T ss_pred HHHHHHHHHHh----hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----c--cHHHHHHHHHHHHHHhcc
Confidence 99999988874 33 3344556677777777888888888888888765421 1 112223333333334444
Q ss_pred H---HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 1007 V---HVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1007 ~---eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
. +.++-.=++ ++.-.. . ..+|..-.+++..-.+....|+.+.-.+.|++|+.
T Consensus 296 ~~gIEd~Iv~KRk-~qYE~~-v-~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 296 KEGIEDAIVGKRK-FQYEKE-V-SKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred hhhhHHHHhhhhh-hHHHHH-H-HhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 3 223222111 111111 1 12333445566666677777898888888888876
No 257
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.59 Score=53.92 Aligned_cols=105 Identities=14% Similarity=0.088 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC---h-------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000230 908 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH---P-------DTMKSYGDLAVFYYRLQHTELALKYVNRALY 977 (1822)
Q Consensus 908 ~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dh---p-------~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~ 977 (1822)
.++..-|.-++.+|+|.+|...|+.|+...+.+.-... | .....+.|++.++...|+|-++++.....|.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 46777899999999999999999999998876543322 2 2345678999999999999999988888776
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 978 LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 978 l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
. ||....+|+..|.+....=+.++|..-|.++|++
T Consensus 259 ~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 259 H--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred c--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 4 6888899999999999988999999999999876
No 258
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.82 E-value=1.1 Score=55.78 Aligned_cols=151 Identities=16% Similarity=0.059 Sum_probs=105.8
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---------------------CChhhHHHHHHHHHHHHH
Q 000230 903 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL---------------------DHPDTMKSYGDLAVFYYR 961 (1822)
Q Consensus 903 hp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~---------------------dhp~ta~ay~nLA~iy~~ 961 (1822)
||....++..++.++..+|++..|.++.++||-.+++.+.. .+.....++......+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 67778899999999999999999999999999998865321 123345566777778888
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 000230 962 LQHTELALKYVNRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIA 1040 (1822)
Q Consensus 962 lG~~eeAl~~~~rAL~l~~~i~G~d-hP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA 1040 (1822)
.|-+..|+++.+-.+.+ .+. +| ..++..+=....+.++|+--+++++.......+..-..-| ...+.+|
T Consensus 116 RG~~rTAlE~~KlLlsL-----dp~~DP--~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP---n~a~S~a 185 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSL-----DPDEDP--LGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP---NFAFSIA 185 (360)
T ss_pred cCcHHHHHHHHHHHHhc-----CCCCCc--chhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc---cHHHHHH
Confidence 99999999888776655 222 33 3445555556667788877777777654421110000012 3445668
Q ss_pred HHHHHccCH---------------HHHHHHHHHHHHHH
Q 000230 1041 IALSLMEAY---------------SLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1041 ~~y~~lGd~---------------eeAi~~lekAL~I~ 1063 (1822)
.++..+++- ++|...+++|+..|
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 888888887 89999999999864
No 259
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.74 E-value=1.8 Score=50.48 Aligned_cols=208 Identities=13% Similarity=0.050 Sum_probs=137.2
Q ss_pred CChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Q 000230 879 GKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVF 958 (1822)
Q Consensus 879 G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~i 958 (1822)
.+.++|+.-|+++|++- |.....-..++-.+-.+++.+|+|++-+++|++.|...+...-.++.+ .+.+++-.+
T Consensus 41 ~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlDy 114 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILDY 114 (440)
T ss_pred cCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHH
Confidence 47889999999999873 333444567888899999999999999999999998876654444433 223333333
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcH----HHHH
Q 000230 959 YYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHI----QTAA 1034 (1822)
Q Consensus 959 y~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp----~tA~ 1034 (1822)
-....+.+.-..+|+..|+.++..- +......+-..||.+|..+++|.+-.+.+.+.-..|+.--|.++. +...
T Consensus 115 iStS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE 192 (440)
T KOG1464|consen 115 ISTSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE 192 (440)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh
Confidence 3344555555667776666655432 223334456679999999999998888888877777766666543 3445
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH--------HHHHHHHHHHHHHHHc
Q 000230 1035 SYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWL--------EYFESKALEQQEAARN 1097 (1822)
Q Consensus 1035 ~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L--------~~l~qqAl~~qeAl~~ 1097 (1822)
+|..--++|..+.+-.+-...|++|+.+-.. --||.+....... +.++...-.+.+|.++
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSA---IPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSA---IPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhcc---CCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 5555557788888888888889999887432 2366553333221 2344444555565543
No 260
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.72 E-value=0.34 Score=48.58 Aligned_cols=82 Identities=18% Similarity=0.155 Sum_probs=62.8
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 000230 917 LYHTGDFNQATIYQQKALDINERELGLD-HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYI 995 (1822)
Q Consensus 917 y~~lGd~eeAle~~qkAL~i~er~lG~d-hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~ 995 (1822)
....|+|.+|++.+.+..+......... ......++.++|.++...|++++|+..+++|+.+.++.. |......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHH
Confidence 4568999999999999999876643322 124566789999999999999999999999999998864 4444555555
Q ss_pred HHHHH
Q 000230 996 NVAMM 1000 (1822)
Q Consensus 996 nLA~i 1000 (1822)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 55444
No 261
>KOG3965 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.68 E-value=0.054 Score=57.42 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=47.3
Q ss_pred CCCeEEEEEEEeCCccEEEEEeCcccccCCC--------------CCcccchHHHHHHhhCHHHHHHHH
Q 000230 226 DDDFFQIDVRVCSGKPMTIVASREGFYPAGK--------------RPLLFHSLVSLLQQISRPFDAAYK 280 (1822)
Q Consensus 226 ~Gdl~yl~v~t~egk~~~Ita~~~GFy~~~~--------------~~~~~HsLv~LL~qiSp~F~~~f~ 280 (1822)
-.|++||+|+|.|+-.|||-=+.+||=+.+. ....+-|+..||-.|||.|+..|-
T Consensus 60 ~~dliyiNV~T~E~~~yCleLT~kG~rIvS~~~d~~ngd~~~~~l~t~yyes~y~LLd~ISP~y~E~Fg 128 (160)
T KOG3965|consen 60 TSDLIYINVRTLEQVPYCLELTRKGWRIVSSRYDCMNGDFTEDDLHTKYYESAYQLLDDISPLYRERFG 128 (160)
T ss_pred CCCeEEEEeEeecCCceeeeecccceeeeccccchhcccchhhhhhhHHHhhHHHHHhhcChHHHHHHH
Confidence 5799999999999999999999999986431 223577999999999999999986
No 262
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=1.6 Score=52.56 Aligned_cols=205 Identities=14% Similarity=0.046 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 866 RTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLY-HTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 866 ~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~-~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
...+++|..|...|++.+-..+....-..+..+. .+..+.....|-.... .-+....-+.++..+++...+-. .
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ek--R 123 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREK--R 123 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHh--H
Confidence 4578899999999998887777666555444331 2334444444433333 23445566666776666554310 0
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRL 1024 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~ 1024 (1822)
-......-..|..+|+..++|.+|+.+....+.-.+++- |.+.....+..=..+|+.+.+..+|...+..|-.....+
T Consensus 124 tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlD--DK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai 201 (411)
T KOG1463|consen 124 TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLD--DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI 201 (411)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc
Confidence 011122335788999999999999999999888777763 334444445555667788888888888887776665555
Q ss_pred hCCCcHHH-HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000230 1025 LGADHIQT-AASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWL 1081 (1822)
Q Consensus 1025 ~G~dhp~t-A~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L 1081 (1822)
|-+ |.. +.+-.+-|.++..-.||.-|..||-+|++-|. .+.+|.....++.++
T Consensus 202 Ycp--PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~--s~~~~v~A~~sLKYM 255 (411)
T KOG1463|consen 202 YCP--PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFD--SLDDDVKALTSLKYM 255 (411)
T ss_pred ccC--HHHHHHHHHhccceeecccccchHHHHHHHHHcccc--ccCCcHHHHHHHHHH
Confidence 433 332 33344456777777899999999999998774 344455555555444
No 263
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=94.66 E-value=0.069 Score=54.57 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=61.6
Q ss_pred CceEEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCcccccccC---CceEEEec
Q 000230 26 PTVTEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSLK---PCHLTVEE 99 (1822)
Q Consensus 26 ~~~~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~lk---~~~L~lVe 99 (1822)
+..++|+|++..+..+.|.|.+.++|.+|++.|.+... ..-..+.|. +.|..|+|-..|++.+ +++|.|+-
T Consensus 25 ~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~g-ip~~~QrLi--~~Gk~L~D~~tL~dy~I~~~stL~l~~ 98 (103)
T cd01802 25 YDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEG-IPVAQQHLI--WNNMELEDEYCLNDYNISEGCTLKLVL 98 (103)
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhC-CChHHEEEE--ECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 45799999999999999999999999999999998865 666778886 5999999999998854 68898874
No 264
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=94.65 E-value=10 Score=44.65 Aligned_cols=187 Identities=15% Similarity=0.136 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDH 945 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~-lGd~eeAle~~qkAL~i~er~lG~dh 945 (1822)
.+..+|+++.+.|+|++.+.++.+++.+... ....=.+.|+.+|-. .|....+...+.... .+..+..+
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~e-------Lt~eERnLlsvayKn~i~~~R~s~R~l~~~e---~~~~~~~~ 72 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPE-------LTEEERNLLSVAYKNVIGSRRASWRILSSIE---QKEENKGN 72 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCC-------CCHHHHHHHHHHHHhccccchHHHHhhhhHh---hhhcccch
Confidence 4677899999999999999999999987211 122233445555432 122222222221111 11111111
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--ChhH-HHHHHHHHHHHHH-----CC-----CHHHHHH
Q 000230 946 PDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPS--HPNT-AATYINVAMMEEG-----LG-----NVHVALR 1012 (1822)
Q Consensus 946 p~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~d--hP~~-a~al~nLA~iy~~-----lG-----d~eeAl~ 1012 (1822)
+...... .-| ...=-++=..++..++.+....+-+. .+.. ...+-..|..|.. .| -.+.|.+
T Consensus 73 ~~~~~~i----~~y-k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 147 (236)
T PF00244_consen 73 EKQVKLI----KDY-KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE 147 (236)
T ss_dssp HHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred hHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence 1111111 011 00011233445555666555433211 1221 1122223433322 11 2378999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHhC
Q 000230 1013 YLHEALKCNQRLLGADHIQTAASYHAIAIALS-LMEAYSLSVQHEQTTLQILQAKLG 1068 (1822)
Q Consensus 1013 ~leeALei~~~~~G~dhp~tA~~l~nLA~~y~-~lGd~eeAi~~lekAL~I~k~~LG 1068 (1822)
.|++|+.+....+.+.||....+..|.+..|+ .+|+.++|++..++|++-....+.
T Consensus 148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 148 AYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred hhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 99999999999899999999988888888775 599999999999999988766554
No 265
>PTZ00044 ubiquitin; Provisional
Probab=94.62 E-value=0.058 Score=51.58 Aligned_cols=68 Identities=12% Similarity=0.174 Sum_probs=59.3
Q ss_pred EEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCcccccccC---CceEEEec
Q 000230 29 TEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSLK---PCHLTVEE 99 (1822)
Q Consensus 29 ~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~lk---~~~L~lVe 99 (1822)
++|.|+++++..+.|.+.++++|.+|++.|..... ++-.+..|. ++|..|+|...|.+.. +++|.|+-
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~g-i~~~~q~L~--~~g~~L~d~~~l~~~~i~~~~~i~l~~ 71 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEG-IDVKQIRLI--YSGKQMSDDLKLSDYKVVPGSTIHMVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-CCHHHeEEE--ECCEEccCCCcHHHcCCCCCCEEEEEE
Confidence 47999999999999999999999999999999886 577888886 5999999999998854 68888764
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.50 E-value=0.072 Score=43.64 Aligned_cols=31 Identities=26% Similarity=0.444 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000230 909 AYSLLAVVLYHTGDFNQATIYQQKALDINER 939 (1822)
Q Consensus 909 al~nLA~ly~~lGd~eeAle~~qkAL~i~er 939 (1822)
+|.+||.+|..+|+|++|+++|+++|.+.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999987654
No 267
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.36 E-value=0.083 Score=43.29 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 993 TYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 993 al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
++.+||.+|..+|+|++|+.+|+++|.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999987654
No 268
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=94.33 E-value=0.068 Score=50.45 Aligned_cols=66 Identities=11% Similarity=0.164 Sum_probs=57.7
Q ss_pred EEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCcccccc--cC-CceEEEec
Q 000230 31 ITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVS--LK-PCHLTVEE 99 (1822)
Q Consensus 31 itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~--lk-~~~L~lVe 99 (1822)
|.|+++.+..+.|.+.+.++|.+|++.|..... |.-+.+.|. ++|..|+|...|++ |+ +++|.||.
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-i~~~~q~Li--~~G~~L~d~~~l~~~~i~~~stl~l~~ 69 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQG-VPPDQLRVI--FAGKELRNTTTIQECDLGQQSILHAVR 69 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHC-CCHHHeEEE--ECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 579999999999999999999999999998865 677888896 59999999999987 44 69999874
No 269
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=94.28 E-value=0.071 Score=50.95 Aligned_cols=66 Identities=17% Similarity=0.228 Sum_probs=57.0
Q ss_pred EEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCcccccc--cC-CceEEEec
Q 000230 31 ITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVS--LK-PCHLTVEE 99 (1822)
Q Consensus 31 itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~--lk-~~~L~lVe 99 (1822)
|.|+++.+..+.|.+.+.++|.+|++.|..... +....+.|. ++|..|.|-..|++ |+ +++|.|+.
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g-i~~~~q~L~--~~G~~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRER-VQADQFWLS--FEGRPMEDEHPLGEYGLKPGCTVFMNL 69 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhC-CCHHHeEEE--ECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 689999999999999999999999999988765 778889997 59999999988887 43 57888764
No 270
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.23 E-value=0.93 Score=52.75 Aligned_cols=207 Identities=10% Similarity=0.031 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
-.+|-.+-.+++.+|+|++-.+.|.+.|...+.....++.+- +.+.+-..-....+.+--.++|+..|...+.. .+
T Consensus 65 FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdA--KN 140 (440)
T KOG1464|consen 65 FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILDYISTSKNMDLLQEFYETTLDALKDA--KN 140 (440)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhh--hc
Confidence 457778889999999999999999999987765544443332 22222222222334444556677666665543 12
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHP----NTAATYINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP----~~a~al~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
.......-..||.+|+..+.|.+-.+.+++.-.-++.--|.++. ....+|.---.+|..+.+-.+-..+|++||.+
T Consensus 141 eRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhi 220 (440)
T KOG1464|consen 141 ERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHI 220 (440)
T ss_pred ceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHh
Confidence 22334455679999999999999988888888777776666543 23444444456788888877778889999988
Q ss_pred HHHhhCCCcHHHH-HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000230 1021 NQRLLGADHIQTA-ASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWL 1081 (1822)
Q Consensus 1021 ~~~~~G~dhp~tA-~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L 1081 (1822)
-..+ -||.+. .+...=|..+...|+|++|..-|-+|+.-|. ....|+-..++.+|
T Consensus 221 KSAI---PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD---EsGspRRttCLKYL 276 (440)
T KOG1464|consen 221 KSAI---PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD---ESGSPRRTTCLKYL 276 (440)
T ss_pred hccC---CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc---ccCCcchhHHHHHH
Confidence 6543 356543 3333445677788889988887777766442 23355555555544
No 271
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=94.13 E-value=0.079 Score=50.31 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=55.8
Q ss_pred EEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCcccccc--cC-CceEEEe
Q 000230 31 ITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVS--LK-PCHLTVE 98 (1822)
Q Consensus 31 itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~--lk-~~~L~lV 98 (1822)
+.|+++.+..+.|.+.++++|.||++.|..... ++-....|. +.|..|+|-..|.+ |+ +++|.|+
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~g-i~~~~q~Li--~~G~~L~D~~~l~~~~i~~~~tv~~~ 68 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEG-VDPCCQRWF--FSGKLLTDKTRLQETKIQKDYVVQVI 68 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHhC-CCHHHeEEE--ECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 368999999999999999999999999988754 777888897 59999999999976 44 5888876
No 272
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.08 E-value=0.39 Score=57.76 Aligned_cols=134 Identities=14% Similarity=0.114 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000230 909 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR-LQHTELALKYVNRALYLLHLTCGPSH 987 (1822)
Q Consensus 909 al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~-lG~~eeAl~~~~rAL~l~~~i~G~dh 987 (1822)
+|..+.....+.+..+.|...|.+|+. +...+..+|...|.+.+. .++.+.|...|+++++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-------- 66 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-------- 66 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------
Confidence 344555666666668888888888863 123445678888999777 566666999999999875
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 988 PNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 988 P~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
+.....+......+...++.+.|..+|++++... . .....-.+|......-...|+++.....++++.+++
T Consensus 67 ~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l----~-~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 67 PSDPDFWLEYLDFLIKLNDINNARALFERAISSL----P-KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS----S-CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----C-chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 2223344455577889999999999999998652 1 112134456666777777888888877777776654
No 273
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=1 Score=54.18 Aligned_cols=105 Identities=20% Similarity=0.153 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 905 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCG 984 (1822)
Q Consensus 905 ~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G 984 (1822)
+.|.-|..-|.-|+...+|..|+..|.++|..- -.|..-.+..|.|-|.+.+.+|+|..|+.-+.+|+.+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------ 148 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------ 148 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 477888889999999999999999999998862 1334445778999999999999999999999999886
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 985 PSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 985 ~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
.|..+.+++.=|.++..+.++.+|..|.++.+.+.
T Consensus 149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 46677889999999999999999999999988764
No 274
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.97 E-value=0.85 Score=50.89 Aligned_cols=91 Identities=9% Similarity=0.031 Sum_probs=58.3
Q ss_pred ChhHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHcc----CHHHHHHHHHHH
Q 000230 987 HPNTAATYINVAMMEEGLGNV---HVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLME----AYSLSVQHEQTT 1059 (1822)
Q Consensus 987 hP~~a~al~nLA~iy~~lGd~---eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lG----d~eeAi~~lekA 1059 (1822)
+|..+..+++-|.+|..+.++ .++..++++|+..++..+.- +|....++++||.+|..++ +..+|..+|++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 467788888999888877655 44666666666655544321 3566778899999998665 556788888888
Q ss_pred HHHHHHH--hCCCCHHHHHHH
Q 000230 1060 LQILQAK--LGSEDLRTQDAA 1078 (1822)
Q Consensus 1060 L~I~k~~--LG~dhp~t~~a~ 1078 (1822)
...|++. ..|+..-...++
T Consensus 100 ~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 100 TEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHH
Confidence 8888764 345555444443
No 275
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.94 E-value=0.11 Score=41.60 Aligned_cols=30 Identities=37% Similarity=0.613 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 907 AGAYSLLAVVLYHTGDFNQATIYQQKALDI 936 (1822)
Q Consensus 907 a~al~nLA~ly~~lGd~eeAle~~qkAL~i 936 (1822)
+.+|+++|.+|..+|++++|+.+|++|+++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 468999999999999999999999999997
No 276
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=93.76 E-value=0.12 Score=49.13 Aligned_cols=68 Identities=13% Similarity=0.130 Sum_probs=58.1
Q ss_pred EEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCccccccc--C-CceEEEec
Q 000230 29 TEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSL--K-PCHLTVEE 99 (1822)
Q Consensus 29 ~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~l--k-~~~L~lVe 99 (1822)
++|+|+++++..+.+.+.+.++|.+|++.|..... +.-....|. ++|..|+|-..|++. + |++|.|+-
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g-~~~~~qrL~--~~g~~L~d~~tl~~~~i~~g~~i~l~~ 71 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEG-IPPQQQRLI--YSGKQMNDDKTAADYKLEGGSVLHLVL 71 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhC-CChhhEEEE--ECCeEccCCCCHHHcCCCCCCEEEEEE
Confidence 47999999999999999999999999999998874 666677886 599999999888874 3 68888874
No 277
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.64 E-value=1.5 Score=57.92 Aligned_cols=150 Identities=18% Similarity=0.161 Sum_probs=106.3
Q ss_pred ChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHH
Q 000230 880 KLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHT-----GDFNQATIYQQKALDINERELGLDHPDTMKSYGD 954 (1822)
Q Consensus 880 ~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~l-----Gd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~n 954 (1822)
....|..+|+.+... ....+...+|.+|..- .|.+.|+.+++.|..-+.+.. +.....+++.
T Consensus 227 ~~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~ 293 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYG 293 (552)
T ss_pred hhhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccH
Confidence 466788888888765 2345666777777664 689999999999988322210 1113347889
Q ss_pred HHHHHHHcC-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHhhC
Q 000230 955 LAVFYYRLQ-----HTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLG---NVHVALRYLHEALKCNQRLLG 1026 (1822)
Q Consensus 955 LA~iy~~lG-----~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lG---d~eeAl~~leeALei~~~~~G 1026 (1822)
||.+|.... ++..|+.+|.+|-.+ ++| .+.+.||.++.... ++..|.+||..|....
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G----- 358 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG----- 358 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhc-------CCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-----
Confidence 999998854 678899999888765 344 35678888887765 5778999998887641
Q ss_pred CCcHHHHHHHHHHHHHHH----HccCHHHHHHHHHHHHHH
Q 000230 1027 ADHIQTAASYHAIAIALS----LMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1027 ~dhp~tA~~l~nLA~~y~----~lGd~eeAi~~lekAL~I 1062 (1822)
| ..+.+.||.+|. ..-+...|..+++++.+.
T Consensus 359 --~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 359 --H---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred --C---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 2 345677788776 334788999999998774
No 278
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.62 E-value=6.6 Score=49.02 Aligned_cols=175 Identities=15% Similarity=0.105 Sum_probs=105.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 868 LLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYH---TGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 868 L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~---lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
..++=-.|....+|+.=+++.+..-.+- ..+-+........+|.++.+ .|+.++|+..+..++.- +
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p----~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-------~ 212 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALP----TCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-------D 212 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccC----ccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-------c
Confidence 3344446777778887777665543331 11122334456678888888 89999999998887553 2
Q ss_pred ChhhHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHH
Q 000230 945 HPDTMKSYGDLAVFYYRL---------QHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLH 1015 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~l---------G~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~le 1015 (1822)
......+|..+|.+|-.. ...++|+..|.++.++- ++ ...-.|++.++...|+..+...-++
T Consensus 213 ~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--------~~-~Y~GIN~AtLL~~~g~~~~~~~el~ 283 (374)
T PF13281_consen 213 ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--------PD-YYSGINAATLLMLAGHDFETSEELR 283 (374)
T ss_pred CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--------cc-ccchHHHHHHHHHcCCcccchHHHH
Confidence 334456778888888543 23456666666666552 21 2334678888888887554444344
Q ss_pred HHHHHHHHhhCCC----cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1016 EALKCNQRLLGAD----HIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1016 eALei~~~~~G~d----hp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
+........+|.. ....-..+..++.+....||+++|++++++++..
T Consensus 284 ~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 284 KIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4332222233321 1122233344567777899999999999998874
No 279
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.56 E-value=2.2 Score=51.11 Aligned_cols=152 Identities=15% Similarity=0.052 Sum_probs=104.9
Q ss_pred HHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCChhh
Q 000230 873 KTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHPDT 948 (1822)
Q Consensus 873 ~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~l----Gd~eeAle~~qkAL~i~er~lG~dhp~t 948 (1822)
......+.+..|..++..+-.. ........++.+|... .++.+|+.+|+.+.. ...
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~~----------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~----------~g~ 108 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAEL----------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA----------DGL 108 (292)
T ss_pred ccccccccHHHHHHHHHHhhhc----------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh----------ccc
Confidence 3344667788888888887652 1115667777777663 467888888885543 234
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-------CHHHHHHHHHHH
Q 000230 949 MKSYGDLAVFYYR----LQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLG-------NVHVALRYLHEA 1017 (1822)
Q Consensus 949 a~ay~nLA~iy~~----lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lG-------d~eeAl~~leeA 1017 (1822)
..+.++||.+|.. ..++.+|..+|.+|... .|+.-..+..++|.+|..-. +...|+.+|.+|
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~a 181 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL-------GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKA 181 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-------CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHH
Confidence 5577889999987 45899999999999775 34433455778888877642 223677777776
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHH
Q 000230 1018 LKCNQRLLGADHIQTAASYHAIAIALSL----MEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1018 Lei~~~~~G~dhp~tA~~l~nLA~~y~~----lGd~eeAi~~lekAL~ 1061 (1822)
.... ...+..+||.+|.. ..++.+|+.+|++|.+
T Consensus 182 a~~~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 182 AELG----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAE 219 (292)
T ss_pred HHhc----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 6542 34566778877753 4488999999999887
No 280
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=93.55 E-value=0.16 Score=49.22 Aligned_cols=68 Identities=12% Similarity=0.215 Sum_probs=58.1
Q ss_pred EEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCccccccc--C-CceEEEecc
Q 000230 29 TEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSL--K-PCHLTVEEE 100 (1822)
Q Consensus 29 ~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~l--k-~~~L~lVee 100 (1822)
++|+|++..+..+.|.+.++++|.||++.|.... -|+.....|. +.|..|+|- .|.+. + +++|.||..
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~-~~~~~~qrL~--~~Gk~L~d~-~L~~~gi~~~~~i~l~~~ 72 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRL-KVPKERLALL--HRETRLSSG-KLQDLGLGDGSKLTLVPT 72 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHh-CCChHHEEEE--ECCcCCCCC-cHHHcCCCCCCEEEEEee
Confidence 6899999999899999999999999999998887 4677777886 589999998 78774 4 689998864
No 281
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=93.48 E-value=2.7 Score=60.34 Aligned_cols=156 Identities=21% Similarity=0.094 Sum_probs=114.5
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcC----C----------------
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTG----D---------------- 922 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lG----d---------------- 922 (1822)
..++....+|..++..|+|.+|+..|.+|+.+++.. .|+-..+.|+-.++.+...++ +
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~ 317 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSS 317 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCc
Confidence 356777889999999999999999999999998875 578888888877765543321 1
Q ss_pred ------------------------------------HHHHHHHHHHHHHHHHHhc---CCCChhh--HHHHHHHHHHHHH
Q 000230 923 ------------------------------------FNQATIYQQKALDINEREL---GLDHPDT--MKSYGDLAVFYYR 961 (1822)
Q Consensus 923 ------------------------------------~eeAle~~qkAL~i~er~l---G~dhp~t--a~ay~nLA~iy~~ 961 (1822)
...=.+.+++++.+|.+.. ....|.+ +.+...++.++..
T Consensus 318 ~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~ 397 (1185)
T PF08626_consen 318 TSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVA 397 (1185)
T ss_pred cCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHH
Confidence 1111235566666666553 1223332 4566777777777
Q ss_pred cC--------------------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 962 LQ--------------------HTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 962 lG--------------------~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
+. .-.++..++.+++.+....+ +..+....|..+|.+|..+|-..++.-++++++..+
T Consensus 398 ~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~ 475 (1185)
T PF08626_consen 398 QHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQL 475 (1185)
T ss_pred hhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHh
Confidence 77 77888899999988765433 456778899999999999999999888888887765
Q ss_pred H
Q 000230 1022 Q 1022 (1822)
Q Consensus 1022 ~ 1022 (1822)
.
T Consensus 476 ~ 476 (1185)
T PF08626_consen 476 V 476 (1185)
T ss_pred c
Confidence 3
No 282
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.34 E-value=1.6 Score=49.29 Aligned_cols=98 Identities=17% Similarity=0.044 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 909 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHP 988 (1822)
Q Consensus 909 al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP 988 (1822)
+...+|..+...+++++|+..++.++... .|.-....+-.+||.+...+|.+++|+..+...- ++-
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~~ 156 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIK---------EES 156 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------ccc
Confidence 44568888999999999999999888653 2334455667889999999999999988765432 233
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 989 NTAATYINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 989 ~~a~al~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
-.+......|.++..+|+-++|+..|++|+..
T Consensus 157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 157 WAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 34455667799999999999999999999986
No 283
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.31 E-value=0.16 Score=40.54 Aligned_cols=31 Identities=32% Similarity=0.435 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 991 AATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 991 a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
+.+++++|.+|..+|++++|+.+|++||++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 4578999999999999999999999999873
No 284
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.29 E-value=0.43 Score=53.16 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=59.8
Q ss_pred hHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000230 881 LEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDF---NQATIYQQKALDINERELGLDHPDTMKSYGDLAV 957 (1822)
Q Consensus 881 yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~---eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~ 957 (1822)
|+.|++.++..... +|..+..+++-|.++..+.++ .++..+++.|+.-++..+-. +|....++++||.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHH
Confidence 45566666666554 567788888888888887554 34656666666555544332 4788889999999
Q ss_pred HHHHcCC----HHHHHHHHHHHHHHHHH
Q 000230 958 FYYRLQH----TELALKYVNRALYLLHL 981 (1822)
Q Consensus 958 iy~~lG~----~eeAl~~~~rAL~l~~~ 981 (1822)
+|..++. ..+|..+|++|...+++
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~Fqk 105 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQK 105 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence 9987654 45666777777666554
No 285
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=93.15 E-value=0.18 Score=48.95 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=59.6
Q ss_pred EEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCccccccc--C-CceEEEecc
Q 000230 29 TEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSL--K-PCHLTVEEE 100 (1822)
Q Consensus 29 ~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~l--k-~~~L~lVee 100 (1822)
++|+|+++.+..+.+.+.++++|.||++.|..... +....+.|.+-++|..|+|-..|++. + |++|.|+--
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~-i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIG-VPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhC-CCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 79999999999999999999999999999998874 67777888433589999999888874 3 688888754
No 286
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=93.03 E-value=0.18 Score=47.78 Aligned_cols=66 Identities=17% Similarity=0.263 Sum_probs=56.6
Q ss_pred EEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCccccccc--C-CceEEEe
Q 000230 29 TEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSL--K-PCHLTVE 98 (1822)
Q Consensus 29 ~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~l--k-~~~L~lV 98 (1822)
++|+|+++.+. ..|.+.++++|.+|++.|..... +....+.|- +.|..|+|-..|++. + +++|.||
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~-i~~~~~~Li--~~Gk~L~d~~tL~~~~i~~~stl~l~ 69 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFK-ANQEQLVLI--FAGKILKDTDTLTQHNIKDGLTVHLV 69 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhC-CCHHHEEEE--ECCeEcCCCCcHHHcCCCCCCEEEEE
Confidence 46999999885 58889999999999999998885 788889996 499999999888874 3 6899887
No 287
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.99 E-value=0.14 Score=43.85 Aligned_cols=42 Identities=19% Similarity=0.165 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHH
Q 000230 866 RTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAV 915 (1822)
Q Consensus 866 ~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ 915 (1822)
..++.+|..|..+|++++|+++|+++++. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46788999999999999999999999997 6777777777765
No 288
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=92.97 E-value=0.18 Score=47.51 Aligned_cols=68 Identities=21% Similarity=0.225 Sum_probs=56.1
Q ss_pred EEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCccccccc--C-CceEEEec
Q 000230 29 TEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSL--K-PCHLTVEE 99 (1822)
Q Consensus 29 ~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~l--k-~~~L~lVe 99 (1822)
++|.|+.+++..+.+.+.+.++|.+|++.|...... .-....|. ++|..|+|...|.+. + |++|.||.
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi-~~~~q~L~--~~g~~L~d~~~L~~~~i~~~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGI-PVEQQRLI--YSGRVLKDDETLSEYKVEDGHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCc-CHHHeEEE--ECCEECCCcCcHHHCCCCCCCEEEEEe
Confidence 479999999999999999999999999999988653 44455665 599999999888874 3 68888873
No 289
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.96 E-value=0.21 Score=42.66 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000230 908 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 957 (1822)
Q Consensus 908 ~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~ 957 (1822)
.++..||.+|..+|++++|+..|++++.. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 36788999999999999999999999997 5666777777764
No 290
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.94 E-value=0.19 Score=39.77 Aligned_cols=31 Identities=32% Similarity=0.611 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000230 907 AGAYSLLAVVLYHTGDFNQATIYQQKALDIN 937 (1822)
Q Consensus 907 a~al~nLA~ly~~lGd~eeAle~~qkAL~i~ 937 (1822)
+.+++.+|.+|+.+|++++|+.++++++.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4578999999999999999999999999873
No 291
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.69 E-value=29 Score=43.13 Aligned_cols=237 Identities=19% Similarity=0.103 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
+...+..|.+....|+-..|..+-.++-.++. .+.+-. +...-++.-..-|+|+.|..-|+-.+.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~lls----sDqepL--IhlLeAQaal~eG~~~~Ar~kfeAMl~--------- 148 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLS----SDQEPL--IHLLEAQAALLEGDYEDARKKFEAMLD--------- 148 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhh----ccchHH--HHHHHHHHHHhcCchHHHHHHHHHHhc---------
Confidence 33445567777788999999999888875532 233222 333446677788999999988876543
Q ss_pred ChhhHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 945 HPDTMK-SYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 945 hp~ta~-ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
+|++-. -+..|=.--.++|.++.|..|.+++.... |....+...+-...+..|+|+.|+++.+......
T Consensus 149 dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~-- 218 (531)
T COG3898 149 DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK-- 218 (531)
T ss_pred ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--
Confidence 354421 12222223357899999999999998764 3333334444455678899999999998876543
Q ss_pred hhCCCcH--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH--HHHHHHHHHHHHHHcC
Q 000230 1024 LLGADHI--QTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSE-DLRTQDAAAWLE--YFESKALEQQEAARNG 1098 (1822)
Q Consensus 1024 ~~G~dhp--~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~d-hp~t~~a~~~L~--~l~qqAl~~qeAl~~g 1098 (1822)
+++.+-. ..+..+..-+.... .-|...|.....+++++ .++ -|-...+...|. --..++..+.+..-..
T Consensus 219 vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL-----~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ 292 (531)
T COG3898 219 VIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKL-----APDLVPAAVVAARALFRDGNLRKGSKILETAWKA 292 (531)
T ss_pred hhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhc-----CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc
Confidence 3333322 23333332232222 23567777777777764 232 222222222221 1122455555666567
Q ss_pred CCCCchhhhccccccHHHHHHHHcCCCHHHHHHHHHHHHHHHHc
Q 000230 1099 TPKPDASISSKGHLSVSDLLDYIAPDTDSKARDAQRKARAKLKG 1142 (1822)
Q Consensus 1099 ~~~p~~~~a~~~~lSv~eLl~yi~~Gd~ekA~~~~~KAL~i~k~ 1142 (1822)
.+||++...+ .+...|+....+-..-+.|+.++.
T Consensus 293 ePHP~ia~lY----------~~ar~gdta~dRlkRa~~L~slk~ 326 (531)
T COG3898 293 EPHPDIALLY----------VRARSGDTALDRLKRAKKLESLKP 326 (531)
T ss_pred CCChHHHHHH----------HHhcCCCcHHHHHHHHHHHHhcCc
Confidence 8899875321 245557665554444445554444
No 292
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=92.57 E-value=0.24 Score=47.41 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=54.8
Q ss_pred EEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccc-cccccccccccccCcccCCccccccc--C-CceEEEe
Q 000230 29 TEITVETPDESQVTLKGISTDRILDVRKLLGVHVET-CHLTSFTLSHEVRGSKLKDSVDVVSL--K-PCHLTVE 98 (1822)
Q Consensus 29 ~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~T-c~~T~fsL~~e~~G~~L~d~~el~~l--k-~~~L~lV 98 (1822)
++|+|+++.+..+.|.+.+.++|.++++.|.+.... +.-....|. ++|..|+|-..|++. + |+.|.|+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~--~~G~~L~d~~~L~~~~i~~~~~i~~~ 72 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLI--YSGKILKDDTTLEEYKIDEKDFVVVM 72 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEE--ECCEEccCCCCHHHcCCCCCCEEEEE
Confidence 479999999999999999999999999999998753 245556675 599999999888874 4 5666554
No 293
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.56 E-value=0.11 Score=42.19 Aligned_cols=34 Identities=26% Similarity=0.515 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHH
Q 000230 929 YQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALK 970 (1822)
Q Consensus 929 ~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~ 970 (1822)
+|++||++ +|+...+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 37788887 68999999999999999999999963
No 294
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=92.52 E-value=1.1 Score=53.76 Aligned_cols=133 Identities=16% Similarity=0.133 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 868 LLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDHP 946 (1822)
Q Consensus 868 L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~-lGd~eeAle~~qkAL~i~er~lG~dhp 946 (1822)
+..+.+.....+..+.|..+|.+|+.. ......+|...|.+-+. .++.+.|...|+.++..+ +
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--------~ 67 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--------P 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------T
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------C
Confidence 334445555666699999999999743 11233467777888666 667777999999999875 3
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 947 DTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 947 ~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
.....+.....++...++.+.|..+|++++... + .....-.++......-...|+++.....++++.+.+
T Consensus 68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l----~-~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 68 SDPDFWLEYLDFLIKLNDINNARALFERAISSL----P-KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS----S-CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc----C-chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 334455566678889999999999999998652 1 111133455666667777788888887777776653
No 295
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=3.4 Score=51.32 Aligned_cols=190 Identities=14% Similarity=-0.022 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
.+.++..+.++....++..|..++.+.+-.+.. +........++..++.++..-+.--.++.+.-+++..+... ..|
T Consensus 273 vE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey-~ld 349 (482)
T KOG4322|consen 273 VENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEY-SLD 349 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHh-ccc
Confidence 345677888999999999999999887654432 23345667788888999888888888888887777765543 222
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNT-----AATYINVAMMEEGLGNVHVALRYLHEALK 1019 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~-----a~al~nLA~iy~~lGd~eeAl~~leeALe 1019 (1822)
...+..-.+||..+..+|..+.|+.++..|+.+.....|-+.... +.++...+..+ ...+++.+.+++++|-.
T Consensus 350 -yl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~A~~ 427 (482)
T KOG4322|consen 350 -YLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPRYLDLAQS 427 (482)
T ss_pred -hhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHHHHH
Confidence 234555678899999999999999999999988765554332111 11121222222 45667888999999988
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHHHHccCHHH---HHHHHHHHHH
Q 000230 1020 CNQRLLGADHIQTAASYHAIAIALSLMEAYSL---SVQHEQTTLQ 1061 (1822)
Q Consensus 1020 i~~~~~G~dhp~tA~~l~nLA~~y~~lGd~ee---Ai~~lekAL~ 1061 (1822)
++.++ .-|..++.+.+-+|+.|-..||..+ +...|++++.
T Consensus 428 ~f~kL--~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 428 IFYKL--GCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred HHHHc--cchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 88776 4577788889999999999998754 4455555544
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.31 E-value=0.26 Score=39.03 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 1033 AASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1033 A~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
+.+++.+|.+|..+|++++|+.++++++++.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4578999999999999999999999999863
No 297
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=2.4 Score=50.66 Aligned_cols=101 Identities=21% Similarity=0.189 Sum_probs=75.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH---------------HH
Q 000230 912 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNR---------------AL 976 (1822)
Q Consensus 912 nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~r---------------AL 976 (1822)
.-+.-....|++.+|...+..++... +....+...|+.+|...|+.+.|...+.. -+
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i 210 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQI 210 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566778899999999999999974 45577889999999999999888766642 23
Q ss_pred HHHHHhcCC-----------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 977 YLLHLTCGP-----------SHPNTAATYINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 977 ~l~~~i~G~-----------dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
++..+.-.. .+|+...+.+.||..|...|+++.|++.+-..+..
T Consensus 211 ~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 211 ELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 343332221 14555667789999999999999999888655543
No 298
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=92.13 E-value=0.24 Score=48.02 Aligned_cols=68 Identities=15% Similarity=0.116 Sum_probs=57.7
Q ss_pred EEEEEECCCCCe-eEEE-ecCcchHHHHHHHhhhcccccccccccccccccCcccCCccccccc--C-CceEEEec
Q 000230 29 TEITVETPDESQ-VTLK-GISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSL--K-PCHLTVEE 99 (1822)
Q Consensus 29 ~~itV~~P~~~~-i~l~-~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~l--k-~~~L~lVe 99 (1822)
++|+|+++.+.. +.|. +.+.++|-+|++.|.+... +.-....|.| .|..|+|...|++. + +++|.|+-
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~g-i~~~~QrLi~--~Gk~L~D~~tL~~y~i~~~~~i~l~~ 73 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFN-VEPECQRLFY--RGKQMEDGHTLFDYNVGLNDIIQLLV 73 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhC-CCHHHeEEEe--CCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 479999999987 6885 8899999999999998764 7888889975 99999999999874 4 68887764
No 299
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=92.09 E-value=0.11 Score=64.84 Aligned_cols=98 Identities=20% Similarity=0.181 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
+..+-+.+..++..+.|+.|+.+|.+|+++ +|..+..+.+.+.++...++|..|+.-+.+|++.
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-------- 67 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL-------- 67 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------
Confidence 344556677888899999999999999998 7888888999999999999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
.|..+.+|+.-|.++..++++.+|+..|+....+
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 4889999999999999999999999988887665
No 300
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=92.05 E-value=0.29 Score=46.76 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=55.3
Q ss_pred EEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCccccccc--C-CceEEEec
Q 000230 29 TEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSL--K-PCHLTVEE 99 (1822)
Q Consensus 29 ~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~l--k-~~~L~lVe 99 (1822)
++|.|++. ..+.|.|.++++|.||++.|.+... +.-....|. ++|..|+|-..|++. + +++|.||-
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~g-ip~~~q~Li--~~Gk~L~D~~tL~~~~i~~~~tl~l~~ 69 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEG-IDVEDQVLL--LAGVPLEDDATLGQCGVEELCTLEVAG 69 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhC-CCHHHEEEE--ECCeECCCCCCHHHcCCCCCCEEEEEE
Confidence 47889984 5688999999999999999988865 677788887 599999999999874 4 48998874
No 301
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.99 E-value=6.7 Score=49.08 Aligned_cols=151 Identities=17% Similarity=0.076 Sum_probs=107.6
Q ss_pred CChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCC---------------------CchhHHHHHHHHHHHHHH
Q 000230 861 SSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGP---------------------YHRMTAGAYSLLAVVLYH 919 (1822)
Q Consensus 861 ~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~---------------------dhp~~a~al~nLA~ly~~ 919 (1822)
.+-...+|+.++.++..+|++..|.+++++||-.++..+.+ .+...-.++......+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 44567899999999999999999999999999877643211 233445567777788888
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-cCCCChhHHHHHHHHH
Q 000230 920 TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLT-CGPSHPNTAATYINVA 998 (1822)
Q Consensus 920 lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i-~G~dhP~~a~al~nLA 998 (1822)
.|-+..|+++++-.+.+ .++ .+-..+++.+-.+..+.++|+--+++++......... + ..-| ...+.+|
T Consensus 116 RG~~rTAlE~~KlLlsL-----dp~-~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~-~~lP---n~a~S~a 185 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSL-----DPD-EDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWL-SLLP---NFAFSIA 185 (360)
T ss_pred cCcHHHHHHHHHHHHhc-----CCC-CCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhh-hhCc---cHHHHHH
Confidence 99999999988887776 222 1334556666677778899988888877655421110 0 0013 3446778
Q ss_pred HHHHHCCCH---------------HHHHHHHHHHHHHH
Q 000230 999 MMEEGLGNV---------------HVALRYLHEALKCN 1021 (1822)
Q Consensus 999 ~iy~~lGd~---------------eeAl~~leeALei~ 1021 (1822)
.++..+++- +.|...+++|+..+
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 888888887 89999999999874
No 302
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.93 E-value=0.12 Score=41.93 Aligned_cols=34 Identities=29% Similarity=0.370 Sum_probs=29.8
Q ss_pred HHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHH
Q 000230 887 YGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATI 928 (1822)
Q Consensus 887 ~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle 928 (1822)
+|++||++ +|+...+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 36778877 78999999999999999999999963
No 303
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=91.84 E-value=0.31 Score=46.31 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=56.4
Q ss_pred EEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCcccccccC---CceEEEec
Q 000230 29 TEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSLK---PCHLTVEE 99 (1822)
Q Consensus 29 ~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~lk---~~~L~lVe 99 (1822)
++|+|+++++..+.|.+.+.++|.+|++.|..... ++-.+..|. ++|..|+|...|.+.. +++|.|+-
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-~~~~~q~L~--~~g~~L~d~~~L~~~~i~~~~~i~l~~ 71 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLSDYNIQKESTLHLVL 71 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhC-CCHHHeEEE--ECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 47999999999999999999999999999999875 455567775 5999999998888743 57777763
No 304
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.83 E-value=0.31 Score=38.73 Aligned_cols=31 Identities=39% Similarity=0.573 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000230 907 AGAYSLLAVVLYHTGDFNQATIYQQKALDIN 937 (1822)
Q Consensus 907 a~al~nLA~ly~~lGd~eeAle~~qkAL~i~ 937 (1822)
+.+|..+|.+|..+|++++|+.+|++++++.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4678999999999999999999999999985
No 305
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=91.81 E-value=0.27 Score=46.01 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=54.1
Q ss_pred ECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCcccccccC---CceEEEecc
Q 000230 34 ETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSLK---PCHLTVEEE 100 (1822)
Q Consensus 34 ~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~lk---~~~L~lVee 100 (1822)
+++.+..+.|.+.+.++|.||++.|..... .......|. ++|..|+|-..|.+++ +++|.|+-.
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~-~~~~~~~L~--~~G~~L~d~~tL~~~~i~~~~~I~l~~k 67 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETG-IPPEQQRLI--YNGKELDDDKTLSDYGIKDGSTIHLVIK 67 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHT-STGGGEEEE--ETTEEESTTSBTGGGTTSTTEEEEEEES
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccc-cccccceee--eeeecccCcCcHHHcCCCCCCEEEEEEe
Confidence 356677899999999999999999999888 666778886 5999999999999853 688888754
No 306
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.56 E-value=9.4 Score=51.65 Aligned_cols=122 Identities=20% Similarity=0.147 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----
Q 000230 907 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHL----- 981 (1822)
Q Consensus 907 a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~----- 981 (1822)
...|..||.+..+.|...+|++-|-+| |+| ..|...-.+..+.|.|++-++|+.-|.+-.+.
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~ 1170 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS 1170 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH
Confidence 357899999999999999999988775 222 35667777778888888888888776654432
Q ss_pred ------------------hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 000230 982 ------------------TCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIAL 1043 (1822)
Q Consensus 982 ------------------i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y 1043 (1822)
+.|+++.++ ..+|.-+...|.|+.|.-+|.. ..-+..||..+
T Consensus 1171 eLi~AyAkt~rl~elE~fi~gpN~A~i----~~vGdrcf~~~~y~aAkl~y~~----------------vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEFIAGPNVANI----QQVGDRCFEEKMYEAAKLLYSN----------------VSNFAKLASTL 1230 (1666)
T ss_pred HHHHHHHHhchHHHHHHHhcCCCchhH----HHHhHHHhhhhhhHHHHHHHHH----------------hhhHHHHHHHH
Confidence 222222221 2233334444444444333321 12345678888
Q ss_pred HHccCHHHHHHHHHHHHH
Q 000230 1044 SLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1044 ~~lGd~eeAi~~lekAL~ 1061 (1822)
..+|+|+.|+...++|-.
T Consensus 1231 V~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred HHHHHHHHHHHHhhhccc
Confidence 889999999999888754
No 307
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.51 E-value=4.1 Score=53.86 Aligned_cols=147 Identities=18% Similarity=0.134 Sum_probs=99.3
Q ss_pred HHhHHHHhhhcCChhHHHHHHHHHHHHH-----cCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcC---
Q 000230 850 SMVPVYKHVACSSADGRTLLESSKTSLD-----KGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTG--- 921 (1822)
Q Consensus 850 ~alpvvK~l~~~s~~A~~L~~lG~~~~~-----~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lG--- 921 (1822)
.++.+++..... ......+.+|.++.. ..+.+.|+.+|+.+...+... .+.....+++.||.+|....
T Consensus 230 ~a~~~~~~~a~~-g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~---a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 230 EAFKYYREAAKL-GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKA---ATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred HHHHHHHHHHhh-cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHH---HhhcCCccccHHHHHHhcCCCCc
Confidence 344444444332 334455666666653 368999999999998721111 01112346788999998853
Q ss_pred --CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 000230 922 --DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQ---HTELALKYVNRALYLLHLTCGPSHPNTAATYIN 996 (1822)
Q Consensus 922 --d~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG---~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~n 996 (1822)
++..|+.+|.+|... ....+.+.||.++.... ++..|.+||..|... .| ..++++
T Consensus 306 ~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-------G~---~~A~~~ 365 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-------GH---ILAIYR 365 (552)
T ss_pred cccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-------CC---hHHHHH
Confidence 678899999988775 23346788888887665 567899999888654 33 345778
Q ss_pred HHHHHHHC----CCHHHHHHHHHHHHHH
Q 000230 997 VAMMEEGL----GNVHVALRYLHEALKC 1020 (1822)
Q Consensus 997 LA~iy~~l----Gd~eeAl~~leeALei 1020 (1822)
+|.||..- -+...|..||.+|.+.
T Consensus 366 la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 366 LALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 88888653 4678999999998775
No 308
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=91.45 E-value=5.3 Score=50.90 Aligned_cols=177 Identities=12% Similarity=-0.067 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHH
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDF-------NQATIYQQKALDINER 939 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~-------eeAle~~qkAL~i~er 939 (1822)
.+-.+|..++..|+|+.|...|+.+..-+.. .......+.++-..|.++..++.. ++...+++.|+..+.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~--Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN--DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh--chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 3556899999999999999999988776532 112334566777777777777743 4777889999988877
Q ss_pred hcC---CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHH--HHCCCHHHHH
Q 000230 940 ELG---LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPN---TAATYINVAMME--EGLGNVHVAL 1011 (1822)
Q Consensus 940 ~lG---~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~---~a~al~nLA~iy--~~lGd~eeAl 1011 (1822)
... ........+...++.++...|.+.+|...+-+...... ..... .+..+-.+|.+| .........
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~~~~~~~~~~~~- 362 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCYASLRSNRPSPG- 362 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhhcccccCCCCcc-
Confidence 322 12235666778888888999999888877766655421 01112 444555555555 111000000
Q ss_pred HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 000230 1012 RYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQ 1064 (1822)
Q Consensus 1012 ~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k 1064 (1822)
+......+.-+..-|.-|...|....|+..|.+|+.+|.
T Consensus 363 --------------~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 363 --------------LTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred --------------chhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 000112233333446788899999999999999999886
No 309
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.36 E-value=0.12 Score=61.98 Aligned_cols=95 Identities=22% Similarity=0.140 Sum_probs=85.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000230 868 LLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 947 (1822)
Q Consensus 868 L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ 947 (1822)
..-.+.-.+..|.++.|++.|..|+.+ .|..+..|...|.++..+++...|+..|..|+++ +++
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~D 180 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPD 180 (377)
T ss_pred HHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccc
Confidence 334456778899999999999999987 7888999999999999999999999999999998 578
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 948 TMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 948 ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
.+.-|-.-+.+...+|+|++|-.++..|+++
T Consensus 181 sa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 181 SAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 8888999999999999999999999998776
No 310
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.28 E-value=15 Score=47.35 Aligned_cols=185 Identities=13% Similarity=0.045 Sum_probs=117.6
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
..+--++..++.+...|+.+.|+.+++.++....+ .-...+++.+|+++..+.+|.+|..++........-
T Consensus 265 ~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW--- 335 (546)
T KOG3783|consen 265 KGALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW--- 335 (546)
T ss_pred CCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh---
Confidence 34555677788888888899999999998872211 123567888999999999999888887776554321
Q ss_pred CCChhhHHHHHHHH-HHH--------HHcCCHHHHHHHHHHHH-------------------------------------
Q 000230 943 LDHPDTMKSYGDLA-VFY--------YRLQHTELALKYVNRAL------------------------------------- 976 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA-~iy--------~~lG~~eeAl~~~~rAL------------------------------------- 976 (1822)
..+ .|..++ .++ ...|+-+.|-.+++.+.
T Consensus 336 ----S~a-~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~ 410 (546)
T KOG3783|consen 336 ----SHA-FYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLAS 410 (546)
T ss_pred ----hHH-HHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccc
Confidence 011 111111 111 11122222222222211
Q ss_pred ------HHHHHhc--CC----------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHH
Q 000230 977 ------YLLHLTC--GP----------------SHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQT 1032 (1822)
Q Consensus 977 ------~l~~~i~--G~----------------dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~t 1032 (1822)
.+|...- ++ +.-+..--+.-+|.++..+|+...|..+|..+++- ......++...
T Consensus 411 P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~ 489 (546)
T KOG3783|consen 411 PYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAV 489 (546)
T ss_pred hHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccc
Confidence 1111100 00 11112234567899999999999999999988865 23334567778
Q ss_pred HHHHHHHHHHHHHccC-HHHHHHHHHHHHHH
Q 000230 1033 AASYHAIAIALSLMEA-YSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1033 A~~l~nLA~~y~~lGd-~eeAi~~lekAL~I 1062 (1822)
..+++.||.+|..+|. +.+|..++.+|-+.
T Consensus 490 PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 490 PFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred cHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 8899999999999999 99999999998763
No 311
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.16 E-value=0.4 Score=38.13 Aligned_cols=31 Identities=13% Similarity=0.229 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 1033 AASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1033 A~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
+.+++.+|.+|..+|++++|+.+|++++++.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3578999999999999999999999999874
No 312
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=13 Score=44.20 Aligned_cols=174 Identities=16% Similarity=0.094 Sum_probs=117.4
Q ss_pred HhhHHHHhHHHHhhhcC---------ChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhh----------------cc
Q 000230 845 KSDIISMVPVYKHVACS---------SADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMS----------------VC 899 (1822)
Q Consensus 845 ~eDI~~alpvvK~l~~~---------s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~----------------i~ 899 (1822)
..||..++..++.+... ...-.+.++++..|...|++..-.+.....-..+.+ ..
T Consensus 16 ~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~ 95 (421)
T COG5159 16 SNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFP 95 (421)
T ss_pred hhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcC
Confidence 34677777777776654 223456788888888888876544443332221111 11
Q ss_pred CC-Cc-hhH--------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Q 000230 900 GP-YH-RMT--------------------AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAV 957 (1822)
Q Consensus 900 G~-dh-p~~--------------------a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~ 957 (1822)
+. +. ++. ...-..+..+|+..|.|.+|+....-.+.-+.+. .|.+.....+..-..
T Consensus 96 ~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~--DDK~~Li~vhllESK 173 (421)
T COG5159 96 YSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY--DDKINLITVHLLESK 173 (421)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--cCccceeehhhhhHH
Confidence 11 10 111 1122346788999999999999999888877765 567788888888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000230 958 FYYRLQHTELALKYVNRALYLLHLTCGPSHPNT-AATYINVAMMEEGLGNVHVALRYLHEALKCNQ 1022 (1822)
Q Consensus 958 iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~-a~al~nLA~iy~~lGd~eeAl~~leeALei~~ 1022 (1822)
+|+...+..++..-+..|...+...+- .|.+ +.....=|.....-.+|..|-.||-+|++-+.
T Consensus 174 vyh~irnv~KskaSLTaArt~Ans~YC--Ppqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft 237 (421)
T COG5159 174 VYHEIRNVSKSKASLTAARTLANSAYC--PPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFT 237 (421)
T ss_pred HHHHHHhhhhhhhHHHHHHHHhhccCC--CHHHHHHHHHhccceeeccccchhHHHHHHHHHhccc
Confidence 999999999998888888877766652 2332 33333446677788899999999999998764
No 313
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.70 E-value=8.1 Score=50.06 Aligned_cols=106 Identities=8% Similarity=-0.001 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCc
Q 000230 950 KSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADH 1029 (1822)
Q Consensus 950 ~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dh 1029 (1822)
..+.|-|.-+++..+|..|+++|+..+..+-. ...+...+....+|+.||..+.+++.|.+++++|-+.-
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-------- 424 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-------- 424 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc--------
Confidence 45677888899999999999999998876421 12244568889999999999999999999999997752
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 000230 1030 IQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQA 1065 (1822)
Q Consensus 1030 p~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~ 1065 (1822)
+....+...+-.+...-|.-.+|+........++..
T Consensus 425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 222333444556666778889999988877776644
No 314
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=90.68 E-value=37 Score=46.17 Aligned_cols=168 Identities=19% Similarity=0.150 Sum_probs=94.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000230 868 LLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 947 (1822)
Q Consensus 868 L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ 947 (1822)
..--|-.+.++|++++|..++ +++... +.. --..+..|-.+|..++++++|..+|++++..+ |.
T Consensus 46 ~vLkaLsl~r~gk~~ea~~~L-e~~~~~----~~~---D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--------P~ 109 (932)
T KOG2053|consen 46 KVLKALSLFRLGKGDEALKLL-EALYGL----KGT---DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--------PS 109 (932)
T ss_pred HHHHHHHHHHhcCchhHHHHH-hhhccC----CCC---chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--------Cc
Confidence 344567889999999999544 444431 112 23467778899999999999999999998863 43
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH--HHHHHHHHHHHhh
Q 000230 948 TMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR--YLHEALKCNQRLL 1025 (1822)
Q Consensus 948 ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~--~leeALei~~~~~ 1025 (1822)
-..++.|=.+|.+-+.|.+-.+ -|+++++. +| ..+.+. +.-+..+++.+...+.+.. ++--|-+++..++
T Consensus 110 -eell~~lFmayvR~~~yk~qQk---aa~~LyK~-~p-k~~yyf--WsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l 181 (932)
T KOG2053|consen 110 -EELLYHLFMAYVREKSYKKQQK---AALQLYKN-FP-KRAYYF--WSVISLILQSIFSENELLDPILLALAEKMVQKLL 181 (932)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh-CC-cccchH--HHHHHHHHHhccCCcccccchhHHHHHHHHHHHh
Confidence 4445555566666666654332 24555543 22 223322 3334455555555555444 1111222333333
Q ss_pred CCC-cHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 000230 1026 GAD-HIQTAASYHAIAIALSLMEAYSLSVQHEQTT 1059 (1822)
Q Consensus 1026 G~d-hp~tA~~l~nLA~~y~~lGd~eeAi~~lekA 1059 (1822)
-.. ......=....-.++..+|++++|...+...
T Consensus 182 ~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~ 216 (932)
T KOG2053|consen 182 EKKGKIESEAEIILYLLILELQGKYQEALEFLAIT 216 (932)
T ss_pred ccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 222 1221111122245566789999998887543
No 315
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.52 E-value=7.7 Score=48.27 Aligned_cols=145 Identities=17% Similarity=0.014 Sum_probs=85.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh----c-CCCChhhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHH
Q 000230 910 YSLLAVVLYHTGDFNQATIYQQKALDINERE----L-GLDHPDTMKSYGDLAVFYYRLQHT---ELALKYVNRALYLLHL 981 (1822)
Q Consensus 910 l~nLA~ly~~lGd~eeAle~~qkAL~i~er~----l-G~dhp~ta~ay~nLA~iy~~lG~~---eeAl~~~~rAL~l~~~ 981 (1822)
|+.-|.+.+....|.+|+.++-.|=+.+-.+ + +.|+ .+..-..+-+||+.+.+. .+|..-+.+|-+-+..
T Consensus 166 ~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDN--yallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~ 243 (568)
T KOG2561|consen 166 LHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDN--YALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFER 243 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcc--hhhhhcchhheehhhcccccCChHHHHHHHHHHhhhh
Confidence 4444555555566666666665555444322 0 1121 233344566788877664 5777777777777766
Q ss_pred hcCCCC-----------hhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH------
Q 000230 982 TCGPSH-----------PNT---AATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAI------ 1041 (1822)
Q Consensus 982 i~G~dh-----------P~~---a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~------ 1041 (1822)
.||.+| |+. .+.+.-.|.+.+++|+-++|.++|+.|.....++.=.+ . ...++..+|.
T Consensus 244 syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d-~-~lsllv~mGfeesdaR 321 (568)
T KOG2561|consen 244 SYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKIND-E-TLSLLVGMGFEESDAR 321 (568)
T ss_pred hhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccc-h-HHHHHHHcCCCchHHH
Confidence 666553 433 45566789999999999999999999988766542222 1 2222222221
Q ss_pred --HHHHccCHHHHHHHHHH
Q 000230 1042 --ALSLMEAYSLSVQHEQT 1058 (1822)
Q Consensus 1042 --~y~~lGd~eeAi~~lek 1058 (1822)
+-.+.|+.+.|++|..+
T Consensus 322 laLRsc~g~Vd~AvqfI~e 340 (568)
T KOG2561|consen 322 LALRSCNGDVDSAVQFIIE 340 (568)
T ss_pred HHHHhccccHHHHHHHHHH
Confidence 12345677777776643
No 316
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=90.46 E-value=0.45 Score=58.87 Aligned_cols=135 Identities=23% Similarity=0.156 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHhhhhhhhhcc---CCCchhHHH-HH--H----HHHHHHHHcCCHHHHHHHHHHH
Q 000230 865 GRTLLESSKTSLDK-GKLEDAVNYGSKALSKLMSVC---GPYHRMTAG-AY--S----LLAVVLYHTGDFNQATIYQQKA 933 (1822)
Q Consensus 865 A~~L~~lG~~~~~~-G~yeeAie~~~eAL~l~~~i~---G~dhp~~a~-al--~----nLA~ly~~lGd~eeAle~~qkA 933 (1822)
.+++--+|..|... .+.-.|+.++.++++...+-. -+.++.... +| . +...+-...+|.+ ++--+|
T Consensus 245 iealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~~Rmqa 321 (615)
T KOG0508|consen 245 IEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---EMRMQA 321 (615)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---HHHHHH
Confidence 45555567666543 357778999999988765510 011221111 11 1 1111111122222 234578
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000230 934 LDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEE 1002 (1822)
Q Consensus 934 L~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~ 1002 (1822)
|.+.++++|++|+++......-|.+|..+|+++..++++..||.+.++.+.+-.|.++..+...+.++.
T Consensus 322 LiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 322 LIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 999999999999999877778899999999999999999999999999999999999998888887653
No 317
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=90.42 E-value=0.47 Score=44.58 Aligned_cols=68 Identities=16% Similarity=0.146 Sum_probs=55.5
Q ss_pred EEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCccccccc--C-CceEEEecc
Q 000230 29 TEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSL--K-PCHLTVEEE 100 (1822)
Q Consensus 29 ~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~l--k-~~~L~lVee 100 (1822)
++|+|+.. +..+.+.+.+.++|.++++.|..... +.-.+..|. ++|..|+|-..|.++ + |++|.|+.+
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~g-i~~~~q~L~--~~g~~l~d~~~L~~~~i~~g~~l~v~~~ 71 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTG-VEPRDQKLI--FKGKERDDAETLDMSGVKDGSKVMLLED 71 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhC-CChHHeEEe--eCCcccCccCcHHHcCCCCCCEEEEecC
Confidence 47899997 66688889999999999999998763 566778886 589999998888774 3 689988753
No 318
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.25 E-value=21 Score=46.45 Aligned_cols=105 Identities=13% Similarity=0.096 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000230 866 RTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH 945 (1822)
Q Consensus 866 ~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dh 945 (1822)
..|.+.|.-.+...+|..++++|...+..+- .+......+...++|+.||..+.+.+.|.+++++|-+. +
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~--~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~--------d 424 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDII--SDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV--------D 424 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc--chhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--------c
Confidence 3466678888899999999999999987642 23345677999999999999999999999999999765 2
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000230 946 PDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLH 980 (1822)
Q Consensus 946 p~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~ 980 (1822)
|........+-.+...-|.-++|+.+.........
T Consensus 425 ~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 425 RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 33333344445555667888999988877766543
No 319
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.19 E-value=1.5 Score=53.25 Aligned_cols=62 Identities=19% Similarity=0.145 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHH
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQ 925 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~ee 925 (1822)
....++..|+.++.+++|+.|...|.+|..+...+||..|-++..+++..|..++..++++.
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~ 101 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEES 101 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668889999999999999999999999999999999999999999999999998766543
No 320
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=90.04 E-value=1 Score=44.60 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=60.6
Q ss_pred CceEEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCcccccccC---CceEEEe
Q 000230 26 PTVTEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSLK---PCHLTVE 98 (1822)
Q Consensus 26 ~~~~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~lk---~~~L~lV 98 (1822)
+..++|.|+.+.+..+.|.|.++++|..|-+.+.+.... ....+.|. ++|.+|+|...+.++. +++|.|+
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi-~~~~~rf~--f~G~~L~~~~T~~~l~m~d~d~I~v~ 81 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGL-SMNSVRFL--FDGQRIRDNQTPDDLGMEDGDEIEVM 81 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCC-CccceEEE--ECCeECCCCCCHHHcCCCCCCEEEEE
Confidence 567899999999999999999999999999999999754 56788886 5999999998888854 6777776
No 321
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.92 E-value=5.5 Score=49.61 Aligned_cols=180 Identities=15% Similarity=0.007 Sum_probs=121.8
Q ss_pred cCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 899 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 899 ~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
.|.+-..-...+..-|.++....++..|....++++-.+.+ +..-...+.++..++.++.+.+.--.++.+.-+++..
T Consensus 265 ~g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~ 342 (482)
T KOG4322|consen 265 FGGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFK 342 (482)
T ss_pred hcchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 34444455566667899999999999999998888765432 3334456677888888888888888899998888887
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHHHHHccCHHHHH
Q 000230 979 LHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHI-----QTAASYHAIAIALSLMEAYSLSV 1053 (1822)
Q Consensus 979 ~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp-----~tA~~l~nLA~~y~~lGd~eeAi 1053 (1822)
+...- .....+.+-.++|..+..+|..+.|+..+..|+....-..|-+.. ..+.++..-+.-+ ...+++.+.
T Consensus 343 ~sey~--ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~ 419 (482)
T KOG4322|consen 343 RSEYS--LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFP 419 (482)
T ss_pred HHHhc--cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhH
Confidence 76542 122345556788999999999999999999999876433222111 1122222222222 556778888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000230 1054 QHEQTTLQILQAKLGSEDLRTQDAAAWLEYFE 1085 (1822)
Q Consensus 1054 ~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~ 1085 (1822)
.++++|-+++.+.- -|..+.+....+++.+
T Consensus 420 ~~L~~A~~~f~kL~--~he~ildv~yf~A~~y 449 (482)
T KOG4322|consen 420 RYLDLAQSIFYKLG--CHEKILDVTYFSAYQY 449 (482)
T ss_pred HHHHHHHHHHHHcc--chHHHHHHHHHHHHHH
Confidence 88888888876532 3666666666665554
No 322
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=89.79 E-value=44 Score=43.21 Aligned_cols=236 Identities=12% Similarity=0.052 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhc
Q 000230 907 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQH---TELALKYVNRALYLLHLTC 983 (1822)
Q Consensus 907 a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~---~eeAl~~~~rAL~l~~~i~ 983 (1822)
+..+...+.++...|+...|-.+-.++..++++....-.-.....|..++..--..-+ ++.-..++.+++.+..
T Consensus 286 s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~--- 362 (656)
T KOG1914|consen 286 SMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIED--- 362 (656)
T ss_pred HHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhc---
Confidence 3445567778888888777776666666666654222122233344444444333222 4555566666665542
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 984 GPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 984 G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
.+...++.++-..-.+..-...|...|.+|-+.- .+..|..++.++ .-|.+++|..-|...|+-.+.-
T Consensus 363 ----~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~---r~~hhVfVa~A~----mEy~cskD~~~AfrIFeLGLkk- 430 (656)
T KOG1914|consen 363 ----IDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK---RTRHHVFVAAAL----MEYYCSKDKETAFRIFELGLKK- 430 (656)
T ss_pred ----cCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc---CCcchhhHHHHH----HHHHhcCChhHHHHHHHHHHHh-
Confidence 2222334444444444444566777777665432 223344444443 3467899999999999888774
Q ss_pred HHHhCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHcCCCCCchhhhccccccHHHHHHHHcC-CCHHHHHHHHHHHHHHH
Q 000230 1064 QAKLGSEDLRTQDAAAWLEYFE--SKALEQQEAARNGTPKPDASISSKGHLSVSDLLDYIAP-DTDSKARDAQRKARAKL 1140 (1822)
Q Consensus 1064 k~~LG~dhp~t~~a~~~L~~l~--qqAl~~qeAl~~g~~~p~~~~a~~~~lSv~eLl~yi~~-Gd~ekA~~~~~KAL~i~ 1140 (1822)
+|..-........+|..+- .++..+.+......-.++- ..--|+..+.|-.. |+...+++.-++-...+
T Consensus 431 ---f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k-----s~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 431 ---FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK-----SKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred ---cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh-----hHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 5555444444455554441 1222333333111001111 11145666778776 99999888877766666
Q ss_pred HccCCCCChhhHHHhhhhhhhCCCC
Q 000230 1141 KGKPGQTCETVSDEYQKDEIVSPTS 1165 (1822)
Q Consensus 1141 k~~lG~~Hp~ia~~~~~~~ilg~~h 1165 (1822)
...-...-+..+...++.++++.-|
T Consensus 503 ~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 503 PADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred chhhcCCCChHHHHHHHHhhccccc
Confidence 5331112234455556667766555
No 323
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=89.58 E-value=30 Score=42.70 Aligned_cols=163 Identities=15% Similarity=0.044 Sum_probs=97.2
Q ss_pred chhHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000230 903 HRMTAGAYSLLAVVLYHTGD-----FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALY 977 (1822)
Q Consensus 903 hp~~a~al~nLA~ly~~lGd-----~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~ 977 (1822)
+|....++..+....-..-. ........++-+.|+++.+.. ||.....+..+=..+....+.++..+.+++++.
T Consensus 15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~-np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH-NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 56656666555544433322 233334444444444444333 333333333333334455566776777777765
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCC----------cHHHHHHHHHHHHHHHHcc
Q 000230 978 LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGAD----------HIQTAASYHAIAIALSLME 1047 (1822)
Q Consensus 978 l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~d----------hp~tA~~l~nLA~~y~~lG 1047 (1822)
. .++.+.+-..|.+.-..-...-.++.....|.++|.......... ......++.++...+...|
T Consensus 94 ~-----~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG 168 (321)
T PF08424_consen 94 K-----NPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAG 168 (321)
T ss_pred H-----CCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCC
Confidence 4 123444444444444444455678899999999998876654432 3456677788888899999
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHH
Q 000230 1048 AYSLSVQHEQTTLQILQAKLGSEDLR 1073 (1822)
Q Consensus 1048 d~eeAi~~lekAL~I~k~~LG~dhp~ 1073 (1822)
-.+.|+..+|-.+++. .+.|.+..
T Consensus 169 ~~E~Ava~~Qa~lE~n--~~~P~~~~ 192 (321)
T PF08424_consen 169 YTERAVALWQALLEFN--FFRPESLS 192 (321)
T ss_pred chHHHHHHHHHHHHHH--cCCccccc
Confidence 9999999999888763 45555443
No 324
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=89.42 E-value=2.6 Score=53.67 Aligned_cols=99 Identities=18% Similarity=0.103 Sum_probs=72.4
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 908 GAYSLLAVVL-YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPS 986 (1822)
Q Consensus 908 ~al~nLA~ly-~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~d 986 (1822)
+.+.++|..| +.+|+..+|+.++..|+.... +|.. -.++..||.++++.|...+|--.+..|+.-+
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~-----~h~k-di~lLSlaTiL~RaG~sadA~iILhAA~~dA------- 279 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSS-----RHNK-DIALLSLATVLHRAGFSADAAVILHAALDDA------- 279 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCC-----cccc-cchhhhHHHHHHHcccccchhheeehhccCC-------
Confidence 3445555555 457999999999999988743 3322 2467889999999999999987776665433
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 987 HPNTAATYINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 987 hP~~a~al~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
+..+.-++.+|.+|..+|+|......|..|++.
T Consensus 280 -~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 280 -DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred -ccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 333344778888999999998888888877764
No 325
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=89.33 E-value=11 Score=54.32 Aligned_cols=158 Identities=14% Similarity=0.070 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc---C-C-----------------
Q 000230 906 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL---Q-H----------------- 964 (1822)
Q Consensus 906 ~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~l---G-~----------------- 964 (1822)
.++..-.+|..|...|+|.+|+.+|..|+.+.+. ..|+-..+.++-.++.+..-. | +
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~--~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS--SNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh--cCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 3456677899999999999999999999999876 356666666666555443211 1 0
Q ss_pred -----------------------------------HHHHHHHHHHHHHHHHHhc---CCCChh--HHHHHHHHHHHHHHC
Q 000230 965 -----------------------------------TELALKYVNRALYLLHLTC---GPSHPN--TAATYINVAMMEEGL 1004 (1822)
Q Consensus 965 -----------------------------------~eeAl~~~~rAL~l~~~i~---G~dhP~--~a~al~nLA~iy~~l 1004 (1822)
...-...+.+++.++.+.. .+..|. ...+...++.++...
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence 1112245566666665543 112333 345667777777777
Q ss_pred C--------------------CHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 000230 1005 G--------------------NVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQ 1064 (1822)
Q Consensus 1005 G--------------------d~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k 1064 (1822)
. .-.++..++.+|+.+....+ ...+...+|..||.+|..+|-.+++.-++++++..+-
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~ 476 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLV 476 (1185)
T ss_pred hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 7 67888899999988764332 3456678999999999999999999999999988775
Q ss_pred HHh
Q 000230 1065 AKL 1067 (1822)
Q Consensus 1065 ~~L 1067 (1822)
..+
T Consensus 477 ~~l 479 (1185)
T PF08626_consen 477 PGL 479 (1185)
T ss_pred ccc
Confidence 444
No 326
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=89.24 E-value=0.55 Score=44.67 Aligned_cols=64 Identities=19% Similarity=0.132 Sum_probs=51.4
Q ss_pred EEEECC-CCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCcc-cccc--cC-CceEEE
Q 000230 31 ITVETP-DESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSV-DVVS--LK-PCHLTV 97 (1822)
Q Consensus 31 itV~~P-~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~-el~~--lk-~~~L~l 97 (1822)
|+|+++ ++..+.|.+.++++|.+|++.|..... +.-....|. ++|..|+|-. -|.+ |+ ++.|.|
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~g-ip~~~q~Li--~~Gk~L~D~~~~L~~~gi~~~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESG-IPASQQQLI--YNGRELVDNKRLLALYGVKDGDLVVL 69 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhC-CCHHHeEEE--ECCeEccCCcccHHHcCCCCCCEEEE
Confidence 689999 888899999999999999999998875 566778886 5999998863 3544 54 576654
No 327
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=89.23 E-value=16 Score=46.56 Aligned_cols=179 Identities=16% Similarity=0.031 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHH
Q 000230 951 SYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNV-------HVALRYLHEALKCNQR 1023 (1822)
Q Consensus 951 ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~-------eeAl~~leeALei~~~ 1023 (1822)
.+..||.+++.+++|+.|..+|+-+..-+..- ...-..+.++-..|.++...+.. +....+++.|+..+.+
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~ 287 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLK 287 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHh
Confidence 45679999999999999999999887755321 11234566777777777777643 4778899999988877
Q ss_pred hhC---CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHc
Q 000230 1024 LLG---ADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLR---TQDAAAWLEYFESKALEQQEAARN 1097 (1822)
Q Consensus 1024 ~~G---~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~---t~~a~~~L~~l~qqAl~~qeAl~~ 1097 (1822)
... ........+....+.++..+|.+.+|...+-+....+ + ..+.. .+-.++.+++.+ ..+..
T Consensus 288 ~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~---l-~~~l~~~~~alllE~~a~~~-------~~~~~ 356 (414)
T PF12739_consen 288 SALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEI---L-ESDLRPFGSALLLEQAAYCY-------ASLRS 356 (414)
T ss_pred hhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH---H-hhhhhhHhhHHHHHHHHHhh-------ccccc
Confidence 322 1122455677778888999999988887766555432 2 11111 222223333322 00101
Q ss_pred CCCCCchhhhcccc-ccHHHHHHHHcCCCHHHHHHHHHHHHHHHHc
Q 000230 1098 GTPKPDASISSKGH-LSVSDLLDYIAPDTDSKARDAQRKARAKLKG 1142 (1822)
Q Consensus 1098 g~~~p~~~~a~~~~-lSv~eLl~yi~~Gd~ekA~~~~~KAL~i~k~ 1142 (1822)
..+.+.....++.. -.+.-...|...|....|+.+|.+|+.+|..
T Consensus 357 ~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 357 NRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 01111100001100 0122223788999999999999999999984
No 328
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=89.16 E-value=0.46 Score=58.78 Aligned_cols=134 Identities=24% Similarity=0.190 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHHHHHcCCHHHHH--------HHHHHH
Q 000230 908 GAYSLLAVVLYHT-GDFNQATIYQQKALDINEREL---GLDHPDTMKSYGDLAVFYYRLQHTELAL--------KYVNRA 975 (1822)
Q Consensus 908 ~al~nLA~ly~~l-Gd~eeAle~~qkAL~i~er~l---G~dhp~ta~ay~nLA~iy~~lG~~eeAl--------~~~~rA 975 (1822)
.++-.||..|... .|.-.|+.|+++|++....-. -..++... +++.=|...-+..+-+ .+-.++
T Consensus 246 ealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p----~~ay~~~re~~~~~elE~lv~D~d~~Rmqa 321 (615)
T KOG0508|consen 246 EALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEP----VLAYGYGREVNNREELEELVEDPDEMRMQA 321 (615)
T ss_pred HHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCc----hhhhhhhhhcCCHHHHHHHhcChHHHHHHH
Confidence 3444455544332 346678888888888765410 01111111 1111111111111111 233568
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 000230 976 LYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSL 1045 (1822)
Q Consensus 976 L~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~ 1045 (1822)
|-+.++++|++||++.......|-+|...|+++..++++.-||++.++.+.+-++.++..+...|.++..
T Consensus 322 LiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 322 LIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 8889999999999998888888999999999999999999999999999999999999999888877653
No 329
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=88.97 E-value=3.8 Score=45.74 Aligned_cols=156 Identities=13% Similarity=0.136 Sum_probs=87.3
Q ss_pred CChHHHH-HHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000230 879 GKLEDAV-NYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYH-----TGDFNQATIYQQKALDINERELGLDHPDTMKSY 952 (1822)
Q Consensus 879 G~yeeAi-e~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~-----lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay 952 (1822)
|+|-+++ .-|++|..++...+..+ ..+...+.+|.-+.. .++...|++++..|... ....+.
T Consensus 41 gdYlEgi~knF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC 108 (248)
T KOG4014|consen 41 GDYLEGIQKNFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQAC 108 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHH
Confidence 3444444 34566666665555432 223344455544332 45678888888887663 345667
Q ss_pred HHHHHHHHHc-----CC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----------------------
Q 000230 953 GDLAVFYYRL-----QH--TELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEG---------------------- 1003 (1822)
Q Consensus 953 ~nLA~iy~~l-----G~--~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~---------------------- 1003 (1822)
.++|+++..- ++ ..+|++|+.+|-++- ...+.++|..+|..
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~----------~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~ 178 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE----------DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELG 178 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC----------CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhh
Confidence 7888877643 23 578888888876541 12333444444432
Q ss_pred --CCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHHHHHH
Q 000230 1004 --LGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSL----MEAYSLSVQHEQTTLQILQAK 1066 (1822)
Q Consensus 1004 --lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~----lGd~eeAi~~lekAL~I~k~~ 1066 (1822)
..+.+.|.++--+|-++ +++ .+..|+.+.|.. -.+.++|..|-.+|.+|.+.+
T Consensus 179 ~~~kDMdka~qfa~kACel-------~~~---~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 179 SLSKDMDKALQFAIKACEL-------DIP---QACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred hhhHhHHHHHHHHHHHHhc-------CCh---HHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 24556666665555543 233 344556666542 225667777777777776544
No 330
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=88.63 E-value=60 Score=38.60 Aligned_cols=187 Identities=14% Similarity=0.052 Sum_probs=109.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhhhhhh-hccCCCchhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000230 868 LLESSKTSLDKGKLEDAVNYGSKALSKLM-SVCGPYHRMTAGAYSLLAVVLYH-TGDFNQATIYQQKALDINERELGLDH 945 (1822)
Q Consensus 868 L~~lG~~~~~~G~yeeAie~~~eAL~l~~-~i~G~dhp~~a~al~nLA~ly~~-lGd~eeAle~~qkAL~i~er~lG~dh 945 (1822)
+..+|++.-+.++|++.+.+..+++.+.. .. ....=.+.|+.+|-. .|....+...... ++..+...|.
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~e------Lt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~-- 74 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEE------LTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGN-- 74 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCcc------CCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCc--
Confidence 55678889999999999999999877521 11 122234455555543 3555555544433 2222111121
Q ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--Chh-HHHHHHHHHHHHHH-----CCC-----HHHHHH
Q 000230 946 PDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPS--HPN-TAATYINVAMMEEG-----LGN-----VHVALR 1012 (1822)
Q Consensus 946 p~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~d--hP~-~a~al~nLA~iy~~-----lGd-----~eeAl~ 1012 (1822)
.... .+..-|. ..=-++-..++...+.+....+-+. .+. ....+-..|..|.. .|+ .+.|.+
T Consensus 75 ~~~~----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~ 149 (244)
T smart00101 75 EDHV----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLV 149 (244)
T ss_pred hHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 1111 1111111 1112344556677777766554332 121 12222233333322 222 458999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHhC
Q 000230 1013 YLHEALKCNQRLLGADHIQTAASYHAIAIALS-LMEAYSLSVQHEQTTLQILQAKLG 1068 (1822)
Q Consensus 1013 ~leeALei~~~~~G~dhp~tA~~l~nLA~~y~-~lGd~eeAi~~lekAL~I~k~~LG 1068 (1822)
.|++|+++....+.+.||....+..|.+..|+ .+++.++|+...++|+.-....+.
T Consensus 150 aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld 206 (244)
T smart00101 150 AYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELD 206 (244)
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888788999988888888887766 579999999999998886654443
No 331
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=88.51 E-value=0.55 Score=59.34 Aligned_cols=112 Identities=15% Similarity=0.198 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcH
Q 000230 951 SYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHI 1030 (1822)
Q Consensus 951 ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp 1030 (1822)
+++.-|.++..+|+...|+.++.+|+...- ......+.+||.++.+-|-...|-.++.++|.+.. ..|
T Consensus 609 ~ln~aglywr~~gn~~~a~~cl~~a~~~~p-------~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-----sep 676 (886)
T KOG4507|consen 609 ILNEAGLYWRAVGNSTFAIACLQRALNLAP-------LQQDVPLVNLANLLIHYGLHLDATKLLLQALAINS-----SEP 676 (886)
T ss_pred EeecccceeeecCCcHHHHHHHHHHhccCh-------hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-----cCc
Confidence 445556677789999999999999986531 12234578999999999999999999999999851 122
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000230 1031 QTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLE 1082 (1822)
Q Consensus 1031 ~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~ 1082 (1822)
..++.+|.+|..+.+.+.|++++++|+. +.++.+.....+..++
T Consensus 677 ---l~~~~~g~~~l~l~~i~~a~~~~~~a~~-----~~~~~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 677 ---LTFLSLGNAYLALKNISGALEAFRQALK-----LTTKCPECENSLKLIR 720 (886)
T ss_pred ---hHHHhcchhHHHHhhhHHHHHHHHHHHh-----cCCCChhhHHHHHHHH
Confidence 3467789999999999999999999998 4566666555554443
No 332
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=88.26 E-value=23 Score=41.98 Aligned_cols=152 Identities=11% Similarity=0.058 Sum_probs=93.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC----------hhhHHHHHHHHHHHHHcC--------------CHH
Q 000230 911 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDH----------PDTMKSYGDLAVFYYRLQ--------------HTE 966 (1822)
Q Consensus 911 ~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dh----------p~ta~ay~nLA~iy~~lG--------------~~e 966 (1822)
+.+..+|+..|+..+|+..+++=+..+.+..|..- .-.+.-|..+|.+..... -|.
T Consensus 14 ~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy~ 93 (247)
T PF11817_consen 14 FKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYYQ 93 (247)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHHH
Confidence 45678899999999999999999999888876511 112333455555554432 134
Q ss_pred HHHHHHHHHHHHHHHhcC-CC-------------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhC
Q 000230 967 LALKYVNRALYLLHLTCG-PS-------------------HPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLG 1026 (1822)
Q Consensus 967 eAl~~~~rAL~l~~~i~G-~d-------------------hP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G 1026 (1822)
.|-.+...-.+.++.+.. ++ .+.....+..+........+-...++++.+|+..+...-
T Consensus 94 ~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~- 172 (247)
T PF11817_consen 94 IAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYG- 172 (247)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhc-
Confidence 444444443444444420 00 000000111111111122344567889999998887642
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 000230 1027 ADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQ 1064 (1822)
Q Consensus 1027 ~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k 1064 (1822)
.......+...||..|...|++++|+.+++.+...|+
T Consensus 173 -~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr 209 (247)
T PF11817_consen 173 -QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYR 209 (247)
T ss_pred -cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 2445667778999999999999999999999977665
No 333
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=88.25 E-value=47 Score=41.62 Aligned_cols=138 Identities=12% Similarity=-0.057 Sum_probs=95.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCC---CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000230 917 LYHTGDFNQATIYQQKALDINERELGL---DHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAAT 993 (1822)
Q Consensus 917 y~~lGd~eeAle~~qkAL~i~er~lG~---dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~a 993 (1822)
++.+.+|.+|..+-...+.-.. .+. -+--.+..|+.+..+|-..|+...-..++..-+... .++.+....+..
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~--~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavL 211 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASIS--IQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVL 211 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH--hcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHH
Confidence 3445777777776665544311 011 012346778888888888888766666665555443 344455566777
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 994 YINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 994 l~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
.+.|-.+|...+.|+.|..+..++.-- ....+...|..++.+|.+...+++|..|.+++-+|+..
T Consensus 212 iN~LLr~yL~n~lydqa~~lvsK~~~p----e~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 212 INLLLRNYLHNKLYDQADKLVSKSVYP----EAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHhhcccCc----cccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh
Confidence 788889999999999988877654311 01224478889999999999999999999999998874
No 334
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=87.86 E-value=1.2 Score=43.35 Aligned_cols=70 Identities=10% Similarity=0.073 Sum_probs=54.9
Q ss_pred eEEEEEECCCCCe--eEEEecCcchHHHHHHHhhhcc-cccccccccccccccCcccCCccccccc----C-CceEEEec
Q 000230 28 VTEITVETPDESQ--VTLKGISTDRILDVRKLLGVHV-ETCHLTSFTLSHEVRGSKLKDSVDVVSL----K-PCHLTVEE 99 (1822)
Q Consensus 28 ~~~itV~~P~~~~--i~l~~~~~d~V~dvrq~L~~~~-~Tc~~T~fsL~~e~~G~~L~d~~el~~l----k-~~~L~lVe 99 (1822)
.|+|+||+|++.. +++.+.++++|.|+++-|.... ..|.-..--|- +.|.-|+|-.-|.++ + +-+++||.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLI--y~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLI--YSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEE--EcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 3789999999987 5555589999999999999764 34444556676 599999999888875 2 47888884
No 335
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=87.86 E-value=6.3 Score=44.09 Aligned_cols=149 Identities=19% Similarity=0.194 Sum_probs=100.2
Q ss_pred hHHHHhHHHHhhhcCChhHHHHHHHHHHHH-----HcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHc-
Q 000230 847 DIISMVPVYKHVACSSADGRTLLESSKTSL-----DKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHT- 920 (1822)
Q Consensus 847 DI~~alpvvK~l~~~s~~A~~L~~lG~~~~-----~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~l- 920 (1822)
++..+..++|........+...+..|..++ ..+++..|+++|..+... ....+..++|.+++.-
T Consensus 50 nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC~~~gLl~~~g~ 119 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQACRYLGLLHWNGE 119 (248)
T ss_pred HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHHhhhhhhhccCc
Confidence 666778888888887777888888776655 456788999999888764 3345667788877653
Q ss_pred ----CC--HHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc------------------------CCHHHHHH
Q 000230 921 ----GD--FNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL------------------------QHTELALK 970 (1822)
Q Consensus 921 ----Gd--~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~l------------------------G~~eeAl~ 970 (1822)
++ ..+|++|+.+|..+ ....+.++|...|... .+.+.|++
T Consensus 120 ~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~q 189 (248)
T KOG4014|consen 120 KDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQ 189 (248)
T ss_pred CCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHH
Confidence 22 66788888887664 1223444444444332 34556666
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhh
Q 000230 971 YVNRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHEALKCNQRLL 1025 (1822)
Q Consensus 971 ~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~----lGd~eeAl~~leeALei~~~~~ 1025 (1822)
+..+|-++ +|| .+.-|+..+|.. -.+-++|..|-.+|+++.+.+-
T Consensus 190 fa~kACel-------~~~---~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~ 238 (248)
T KOG4014|consen 190 FAIKACEL-------DIP---QACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELR 238 (248)
T ss_pred HHHHHHhc-------CCh---HHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 65555544 444 456778887754 2367899999999999987653
No 336
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=87.85 E-value=26 Score=43.17 Aligned_cols=128 Identities=12% Similarity=0.013 Sum_probs=87.4
Q ss_pred hHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 000230 881 LEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 960 (1822)
Q Consensus 881 yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~ 960 (1822)
.+.-+.+|++||+. ||+....+..+-.++....+-++...-+++++... ...+.+-..|...-...+
T Consensus 47 ~E~klsilerAL~~--------np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-----~~~~~LW~~yL~~~q~~~ 113 (321)
T PF08424_consen 47 AERKLSILERALKH--------NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-----PGSPELWREYLDFRQSNF 113 (321)
T ss_pred HHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHh
Confidence 45567778888776 33333333333334445556677677777777651 334555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 961 RLQHTELALKYVNRALYLLHLTCGPS----------HPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 961 ~lG~~eeAl~~~~rAL~l~~~i~G~d----------hP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
..-.+......|.++|..+....... ...++.++..+...+.+.|..+.|+..++-.+++.
T Consensus 114 ~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 114 ASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 56678999999999998877654332 23456778889999999999999999999999875
No 337
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=87.28 E-value=25 Score=47.56 Aligned_cols=109 Identities=22% Similarity=0.124 Sum_probs=79.1
Q ss_pred HHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 000230 876 LDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 955 (1822)
Q Consensus 876 ~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nL 955 (1822)
...+++.+|+....+.+.. ||....+.-.-|.++.++|++++|..++ +++.. .+.+ .-.++..|
T Consensus 20 ld~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~L-e~~~~----~~~~---D~~tLq~l 83 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLL-EALYG----LKGT---DDLTLQFL 83 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHH-hhhcc----CCCC---chHHHHHH
Confidence 3557888888888888775 7888777788889999999999999444 33332 1233 23456667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHH
Q 000230 956 AVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHV 1009 (1822)
Q Consensus 956 A~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~ee 1009 (1822)
-.+|..++++++|..+|++++..+ |. -..+..+=++|.+.+.|.+
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999998753 33 3444555566777666654
No 338
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=87.28 E-value=39 Score=39.86 Aligned_cols=159 Identities=11% Similarity=0.061 Sum_probs=82.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 910 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY-RLQHTELALKYVNRALYLLHLTCGPSHP 988 (1822)
Q Consensus 910 l~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~-~lG~~eeAl~~~~rAL~l~~~i~G~dhP 988 (1822)
+..+|.++.+.|+|++++.+.++++.+. ...+..-.+.|+.+|- ..|....+++.+.....-.. +..++
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~---~~~~~ 73 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE---NKGNE 73 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc---ccchh
Confidence 4568999999999999999999998872 2234455566666653 23334444444333222211 11112
Q ss_pred hHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHhhCCC--cH-HHHHHHHHHHHHHHH-----cc-----CHHHHHH
Q 000230 989 NTAATYINVAMMEEGLGNV-HVALRYLHEALKCNQRLLGAD--HI-QTAASYHAIAIALSL-----ME-----AYSLSVQ 1054 (1822)
Q Consensus 989 ~~a~al~nLA~iy~~lGd~-eeAl~~leeALei~~~~~G~d--hp-~tA~~l~nLA~~y~~-----lG-----d~eeAi~ 1054 (1822)
........ | ..+. ++=..+...++.+....+-+. .. .....+-..|..|+- .| -.+.|..
T Consensus 74 ~~~~~i~~----y--k~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 147 (236)
T PF00244_consen 74 KQVKLIKD----Y--KKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE 147 (236)
T ss_dssp HHHHHHHH----H--HHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHH----H--HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence 22111111 1 1111 122344455555554432211 12 222233334444431 11 2367888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000230 1055 HEQTTLQILQAKLGSEDLRTQDAAAWLEYF 1084 (1822)
Q Consensus 1055 ~lekAL~I~k~~LG~dhp~t~~a~~~L~~l 1084 (1822)
.|++|+.+....+.+.||-.....-+...+
T Consensus 148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF 177 (236)
T PF00244_consen 148 AYEEALEIAKKELPPTHPLRLGLALNYSVF 177 (236)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred hhhhHHHHHhcccCCCCcHHHHHHHHHHHH
Confidence 899999988888889888665555544433
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.19 E-value=5.6 Score=45.45 Aligned_cols=76 Identities=22% Similarity=0.192 Sum_probs=57.3
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000230 933 ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALR 1012 (1822)
Q Consensus 933 AL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~ 1012 (1822)
|+..+.+.-|...-+++.....||.+|. ..+.++|+.+|.++|++.. +++.-...++..||.+|+.+|+++.|--
T Consensus 125 A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 125 ALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 4444445556666778888999998887 6789999999999999863 2322234567889999999999998854
Q ss_pred H
Q 000230 1013 Y 1013 (1822)
Q Consensus 1013 ~ 1013 (1822)
|
T Consensus 200 w 200 (203)
T PF11207_consen 200 W 200 (203)
T ss_pred h
Confidence 3
No 340
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=86.95 E-value=13 Score=47.76 Aligned_cols=173 Identities=20% Similarity=0.149 Sum_probs=109.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH---HHHHHHHHHHhcCCC
Q 000230 868 LLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIY---QQKALDINERELGLD 944 (1822)
Q Consensus 868 L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~---~qkAL~i~er~lG~d 944 (1822)
+...+..+-..|+...|-.+-.++.++++.. +.........+|+..-+++++..- +++.-.++.+.++..
T Consensus 289 l~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~-------I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~ 361 (656)
T KOG1914|consen 289 LIEISDLLTEKGDVPDAKSLTDEAASIYERA-------IEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE 361 (656)
T ss_pred HHHhhHHHHHhcccccchhhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh
Confidence 4445666666777666655555555554432 222233344455555566666555 556666666666665
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRL 1024 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~ 1024 (1822)
+.+...+|.++-.+-.+..-...|...|.+|.+.-+ +..|-.++.++ +=|+..++..-|.+.|+-.|..+
T Consensus 362 ~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r---~~hhVfVa~A~----mEy~cskD~~~AfrIFeLGLkkf--- 431 (656)
T KOG1914|consen 362 DIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR---TRHHVFVAAAL----MEYYCSKDKETAFRIFELGLKKF--- 431 (656)
T ss_pred ccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC---CcchhhHHHHH----HHHHhcCChhHHHHHHHHHHHhc---
Confidence 666666777777777777777888888888876532 22233333332 23667899999999999888763
Q ss_pred hCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1025 LGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1025 ~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
.+.+.....| ...+..+++-..|..+|++++.-
T Consensus 432 --~d~p~yv~~Y---ldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 432 --GDSPEYVLKY---LDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred --CCChHHHHHH---HHHHHHhCcchhHHHHHHHHHhc
Confidence 3455555444 55667788888999999888763
No 341
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=86.52 E-value=1.3 Score=55.84 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=90.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHH
Q 000230 953 GDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQT 1032 (1822)
Q Consensus 953 ~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~t 1032 (1822)
-+-|.-.+.-+.|+.|+.+|-+|+++ +|..+..+.+.+..+...++|..|+.-+.+|+++ .|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 34455667778999999999999987 6888888899999999999999999999999886 4788
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000230 1033 AASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYF 1084 (1822)
Q Consensus 1033 A~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l 1084 (1822)
+.+|+.-|.++..++.+.+|+.-|+.... +-|++++..........+
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~-----l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKK-----LAPNDPDATRKIDECNKI 118 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhh-----cCcCcHHHHHHHHHHHHH
Confidence 88899899999999999999888877655 567777766655554444
No 342
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.51 E-value=6.5 Score=48.71 Aligned_cols=108 Identities=17% Similarity=0.129 Sum_probs=76.5
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhC
Q 000230 947 DTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLG 1026 (1822)
Q Consensus 947 ~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G 1026 (1822)
.+-.++..||..|...|+++.|+++|-++.+.+... -.++..+.|+-.+-..+|+|-.-..|..+|.......-.
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-----khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~ 222 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-----KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN 222 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-----HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence 456788999999999999999999999998887543 457778888888888999998888888777655200000
Q ss_pred CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 000230 1027 ADHIQTAASYHAIAIALSLMEAYSLSVQHEQTT 1059 (1822)
Q Consensus 1027 ~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekA 1059 (1822)
......+.+...-|.+...+++|..|..++-.+
T Consensus 223 ~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 223 LAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 000011223334466666777999999888654
No 343
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.41 E-value=6.1 Score=38.58 Aligned_cols=71 Identities=15% Similarity=0.044 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Q 000230 991 AATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAK 1066 (1822)
Q Consensus 991 a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~ 1066 (1822)
+.-...-|.-++...+.++|+..++++|+.. .+.++...++-.|.++|...|+|++++.+.-.=+.+.+..
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344555666778888999999999999875 3456677888889999999999999999988777776543
No 344
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=86.35 E-value=1.7 Score=41.76 Aligned_cols=68 Identities=18% Similarity=0.207 Sum_probs=54.6
Q ss_pred eEEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCccccccc--C-CceEEEe
Q 000230 28 VTEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSL--K-PCHLTVE 98 (1822)
Q Consensus 28 ~~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~l--k-~~~L~lV 98 (1822)
.+.|+|++..+..+.+.+.+.++|.||.+.|.... .+.--.--|- +.|..|+|...|.+. + |+++.|-
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~-~~~~~~qrLi--~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQT-GTRPEKIVLK--KWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHh-CCChHHEEEE--eCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 37899999999999999999999999999998876 3444444554 589999999888874 3 5888773
No 345
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=86.20 E-value=7.6 Score=40.87 Aligned_cols=75 Identities=23% Similarity=0.217 Sum_probs=60.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC---hh----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000230 910 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDH---PD----TMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLT 982 (1822)
Q Consensus 910 l~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dh---p~----ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i 982 (1822)
+.++|...+..+++-.|+-+|++|+.+.+++..... .+ ...+..|||.++..+|+.+-.++|++-|-+....+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567899999999999999999999999988731111 11 23456899999999999999999999998877665
Q ss_pred cC
Q 000230 983 CG 984 (1822)
Q Consensus 983 ~G 984 (1822)
..
T Consensus 84 iP 85 (140)
T PF10952_consen 84 IP 85 (140)
T ss_pred cc
Confidence 43
No 346
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.02 E-value=5.7 Score=38.78 Aligned_cols=69 Identities=20% Similarity=0.134 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000230 910 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTC 983 (1822)
Q Consensus 910 l~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~ 983 (1822)
...-|.-++...+..+|+..++++|... .+.++...++..|..+|...|+|.+++++..+=+++.+.+-
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~ele 77 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELE 77 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344555667888899999999999874 34578889999999999999999999999998888877653
No 347
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.75 E-value=7.8 Score=56.90 Aligned_cols=112 Identities=22% Similarity=0.085 Sum_probs=85.0
Q ss_pred CChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000230 861 SSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERE 940 (1822)
Q Consensus 861 ~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~ 940 (1822)
.+..++.+++.|++....|+++.|..++-.|.+.. ...++...|..++.+|+-..|+.++++.+..+.--
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 45678999999999999999999999999988752 45678889999999999999999999999765322
Q ss_pred c-CC--------CChhhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHh
Q 000230 941 L-GL--------DHPDTMKSYGDLAVFYYRLQHT--ELALKYVNRALYLLHLT 982 (1822)
Q Consensus 941 l-G~--------dhp~ta~ay~nLA~iy~~lG~~--eeAl~~~~rAL~l~~~i 982 (1822)
+ ++ ++.....+...++......+++ .+-+++|..+.++..+.
T Consensus 1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ew 1788 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEW 1788 (2382)
T ss_pred ccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccc
Confidence 1 11 1112234566677777777775 34578888888876543
No 348
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=85.61 E-value=1.1e+02 Score=38.52 Aligned_cols=142 Identities=16% Similarity=0.134 Sum_probs=99.4
Q ss_pred HHHHHcCChHHHHHHHHhhhhhhhhccCC--CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH
Q 000230 873 KTSLDKGKLEDAVNYGSKALSKLMSVCGP--YHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK 950 (1822)
Q Consensus 873 ~~~~~~G~yeeAie~~~eAL~l~~~i~G~--dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ 950 (1822)
..++.+.+|.+|..+-...+.-.- ++.. .+--.+.+|+.+..+|-..|+...-..++..-+... .++.|....+.
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~-~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qav 210 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASIS-IQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAV 210 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHH
Confidence 344567888998887776654311 1111 123357788899999999999776666665555443 45656666667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 951 SYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 951 ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
..+.|=..|...+.|+.|-.+..++..-- ...+-+.++.++.+|.+..-+++|..|.+++-+|+...
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 77778888888899999888766553210 01234678889999999999999999999999998764
No 349
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=85.49 E-value=0.98 Score=41.11 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=46.8
Q ss_pred EEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCcccccc
Q 000230 29 TEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVS 89 (1822)
Q Consensus 29 ~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~ 89 (1822)
++|+|++++ ..+.+.+.++++|.+|++.|...... .-.+..|. ++|..|+|-..|.+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~-~~~~~~L~--~~g~~L~d~~tL~~ 57 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGI-PVEQQRLI--YKGKVLEDDRTLAD 57 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCC-CHHHEEEE--ECCEECCCCCCHHH
Confidence 479999999 68889999999999999999988753 44567775 58999998766655
No 350
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=85.12 E-value=3.9 Score=42.38 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=63.3
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 871 SSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHT----GDFNQATIYQQKALDINERELGLDHP 946 (1822)
Q Consensus 871 lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~l----Gd~eeAle~~qkAL~i~er~lG~dhp 946 (1822)
++..++..|++-+|+++.+..+..... +......+..-|.+++.+ .+.+-=..|+.-+++-+.+..+. +|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~-----~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE-----DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC-----CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-Ch
Confidence 467889999999999999999876432 222223444455555443 34444444555555555443322 46
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 947 DTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 947 ~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
+.+..++.||.-+...-.|++++.-.+++|.+
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 66777888877766666666666666666544
No 351
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.52 E-value=9.4 Score=43.68 Aligned_cols=72 Identities=14% Similarity=0.096 Sum_probs=54.3
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHH
Q 000230 978 LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQ 1054 (1822)
Q Consensus 978 l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~ 1054 (1822)
.+...-|..-.+.+.....||..|. ..+.++|+.+|.++|++.. .++.....++..||.+|..+|+++.|.-
T Consensus 128 ~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~----~~~~~n~eil~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 128 RFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN----PDDNFNPEILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHhcchhhhhh
Confidence 3333445556677888889998887 6788999999999999853 3323335667889999999999998854
No 352
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=84.07 E-value=3.5 Score=40.25 Aligned_cols=57 Identities=25% Similarity=0.262 Sum_probs=46.5
Q ss_pred eEEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCc
Q 000230 28 VTEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDS 84 (1822)
Q Consensus 28 ~~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~ 84 (1822)
...|.|.||++..+......+|+|.||++++..+....-...|.|..-+=...|.|.
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~ 60 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDE 60 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCC
Confidence 578999999999999999999999999999998765555678888633445566654
No 353
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=83.96 E-value=40 Score=40.40 Aligned_cols=156 Identities=15% Similarity=0.134 Sum_probs=85.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHhhCCCcHHHH
Q 000230 955 LAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH-VALRYLHEALKCNQRLLGADHIQTA 1033 (1822)
Q Consensus 955 LA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~e-eAl~~leeALei~~~~~G~dhp~tA 1033 (1822)
=|..+.+.|++.-|-++..-.++.+.... .+..-....+++.++.....-+ +-.++..+|++.. ..|.......
T Consensus 16 Ga~~ll~~~Q~~sg~DL~~lliev~~~~~---~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS--~~~~~~~Gdp 90 (260)
T PF04190_consen 16 GALILLKHGQYGSGADLALLLIEVYEKSE---DPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS--KFGSYKFGDP 90 (260)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH--HTSS-TT--H
T ss_pred HHHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH--ccCCCCCCCH
Confidence 34445566666666666666666665532 1222233456777777665433 4567777888877 3344434456
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-Cchhhhccccc
Q 000230 1034 ASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALEQQEAARNGTPK-PDASISSKGHL 1112 (1822)
Q Consensus 1034 ~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~~qeAl~~g~~~-p~~~~a~~~~l 1112 (1822)
..+..+|..|...|++.+|..|+- +|.+ +........+.... ..+.++ .+.. ..+
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl---------~~~~-~~~~~~~~ll~~~~----------~~~~~~e~dlf-i~R--- 146 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFL---------LGTD-PSAFAYVMLLEEWS----------TKGYPSEADLF-IAR--- 146 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH---------TS-H-HHHHHHHHHHHHHH----------HHTSS--HHHH-HHH---
T ss_pred HHHHHHHHHHHhhccHHHHHHHHH---------hcCC-hhHHHHHHHHHHHH----------HhcCCcchhHH-HHH---
Confidence 778999999999999999999983 4432 22211111111111 122222 2222 122
Q ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHHHc
Q 000230 1113 SVSDLLDYIAPDTDSKARDAQRKARAKLKG 1142 (1822)
Q Consensus 1113 Sv~eLl~yi~~Gd~ekA~~~~~KAL~i~k~ 1142 (1822)
+| +.|+..++...|...+..-++.+.+
T Consensus 147 aV---L~yL~l~n~~~A~~~~~~f~~~~~~ 173 (260)
T PF04190_consen 147 AV---LQYLCLGNLRDANELFDTFTSKLIE 173 (260)
T ss_dssp HH---HHHHHTTBHHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHhcCHHHHHHHHHHHHHHHhc
Confidence 33 6888999999998887776665433
No 354
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=83.90 E-value=3 Score=40.54 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=48.4
Q ss_pred CceEEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCcc--ccccc
Q 000230 26 PTVTEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSV--DVVSL 90 (1822)
Q Consensus 26 ~~~~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~--el~~l 90 (1822)
.....|.|++|++..++....++|+|++|++++........-..|.|...+-...|.+.. .|.++
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~ 70 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEA 70 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCC
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHh
Confidence 357889999999999999999999999999999877655554458885222334555554 55554
No 355
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=83.86 E-value=25 Score=44.40 Aligned_cols=139 Identities=17% Similarity=0.064 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLL--AVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nL--A~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
.....+..++..++|..|.+++...+.. +-+. .. ...+..| |..++...+|.+|.+++++.+......
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~--~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l---- 202 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRR---LPGR--EE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL---- 202 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCch--hh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh----
Confidence 3456778889999999999999998864 2221 12 3455555 455677899999999999877642110
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
......+..+..+.. ++..+...+.........-.......+..-|.--...|+|+.|+-.+-+++++.-+
T Consensus 203 -~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 203 -NQEREGLKELVEVLK-------ALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred -HhHHHHHHHHHHHHH-------HHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 000111222222221 11111111111111000002233344444455556789999999999899887643
No 356
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.84 E-value=0.38 Score=57.94 Aligned_cols=91 Identities=24% Similarity=0.309 Sum_probs=80.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000230 914 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAAT 993 (1822)
Q Consensus 914 A~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~a 993 (1822)
|.-.+..|.+++|+++|..|+.+ .|..+..|..-|.++..+++...|++-|..|+.+ +++.+.-
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~ 184 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKG 184 (377)
T ss_pred HHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccc
Confidence 33445568899999999999987 6888999999999999999999999999999987 5778888
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 994 YINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 994 l~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
|-.-|.....+|+|++|..+|+.|+++
T Consensus 185 ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 185 YKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 888899999999999999999988875
No 357
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=83.54 E-value=25 Score=43.01 Aligned_cols=194 Identities=12% Similarity=0.041 Sum_probs=116.9
Q ss_pred HHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhH
Q 000230 870 ESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM 949 (1822)
Q Consensus 870 ~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta 949 (1822)
.+...|+..++|.+|+.+....+.-+++.- +-......+..=..+|+.+.+..+|...+.-|-.....++- .|.+.
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlD--DK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYc--pPqlQ 208 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLD--DKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYC--PPQLQ 208 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--cccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccccc--CHHHH
Confidence 456788999999999999999888777662 33344445555567777778888887777666555443332 24433
Q ss_pred HHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCC
Q 000230 950 KSYGDL-AVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGAD 1028 (1822)
Q Consensus 950 ~ay~nL-A~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~d 1028 (1822)
..+-.+ |.++..-.+|..|..||.+|++-+..+ .++.....++-.+-.+-..++..++--..+..-+.+. +-|++
T Consensus 209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~--~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y~g~~ 284 (411)
T KOG1463|consen 209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL--DDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--YAGRD 284 (411)
T ss_pred HHHHHhccceeecccccchHHHHHHHHHcccccc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--ccCcc
Confidence 333333 555566689999999999999987654 2455555555555566666777766544443322221 22322
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000230 1029 HIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWL 1081 (1822)
Q Consensus 1029 hp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L 1081 (1822)
..++..+|.++... .+.-|+.|+.-|+..+-. +|-+......|
T Consensus 285 ----i~AmkavAeA~~nR-----SLkdF~~AL~~yk~eL~~-D~ivr~Hl~~L 327 (411)
T KOG1463|consen 285 ----IDAMKAVAEAFGNR-----SLKDFEKALADYKKELAE-DPIVRSHLQSL 327 (411)
T ss_pred ----hHHHHHHHHHhcCC-----cHHHHHHHHHHhHHHHhc-ChHHHHHHHHH
Confidence 23444556666532 334455555555554443 55565555554
No 358
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=83.44 E-value=1.7 Score=54.35 Aligned_cols=67 Identities=13% Similarity=0.183 Sum_probs=56.0
Q ss_pred EEEEEECCCCCeeEEEecCcchHHHHHHHhhhccc--ccccccccccccccCcccCCccccccc--C-CceEEE
Q 000230 29 TEITVETPDESQVTLKGISTDRILDVRKLLGVHVE--TCHLTSFTLSHEVRGSKLKDSVDVVSL--K-PCHLTV 97 (1822)
Q Consensus 29 ~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~--Tc~~T~fsL~~e~~G~~L~d~~el~~l--k-~~~L~l 97 (1822)
++|+||+..+..+.|.|.+.++|.||++.|..... .|.-....|- ++|..|+|-..|+++ + +++|.|
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLI--y~GkiL~Dd~tL~dy~I~e~~~Ivv 72 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLI--YSGKILSDDKTVREYKIKEKDFVVV 72 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEE--ECCEECCCCCcHHHcCCCCCCEEEE
Confidence 47999999999999999999999999999998764 4777778886 599999999988874 4 455544
No 359
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=83.37 E-value=42 Score=43.89 Aligned_cols=124 Identities=16% Similarity=0.111 Sum_probs=74.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 912 LLAVVLYHTGDFNQATIYQQK------ALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGP 985 (1822)
Q Consensus 912 nLA~ly~~lGd~eeAle~~qk------AL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~ 985 (1822)
.+|.++..+|+|.+|..+|.+ |++++. -.-++.++.-+...|.-++-..+.++--+..+.+
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT----------DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~--- 703 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENRALEMYT----------DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI--- 703 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---
Confidence 477888889999999998865 555542 2234566777777777666655555544443332
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHH------HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Q 000230 986 SHPNTAATYINVAMMEEGLGNVHVALRYL------HEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQT 1058 (1822)
Q Consensus 986 dhP~~a~al~nLA~iy~~lGd~eeAl~~l------eeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lek 1058 (1822)
..|.. .|.++...|+.++|+... +-++++.+++ +..-...+..+|..+..+..+-.|.+.|++
T Consensus 704 kePka------AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 704 KEPKA------AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred CCcHH------HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 23443 367788889988887643 4556665554 112223344455555555555555555543
No 360
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.34 E-value=13 Score=46.51 Aligned_cols=117 Identities=15% Similarity=0.062 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCC---ch-hHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPY---HR-MTAGAYSLLAVVLYHTGD---FNQATIYQQKALDIN 937 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~d---hp-~~a~al~nLA~ly~~lGd---~eeAle~~qkAL~i~ 937 (1822)
+..+++.|++++....|.+|+.++.+|-+.+-.- +.. .. ..+..-..+-+||+.+.+ ...|..-+..|-.-+
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~C-d~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf 241 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLC-DSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF 241 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh-hHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence 4567888999999999999999888886655332 110 00 011111223445555443 455666666665556
Q ss_pred HHhcCCC-----------Chhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000230 938 ERELGLD-----------HPDT---MKSYGDLAVFYYRLQHTELALKYVNRALYLLHLT 982 (1822)
Q Consensus 938 er~lG~d-----------hp~t---a~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i 982 (1822)
++.+|.+ .|+. ...+..-|.+.+++|+-++|.++++.|...+..+
T Consensus 242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 6655554 4443 3445667999999999999999999998877654
No 361
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=82.88 E-value=2.4 Score=35.64 Aligned_cols=35 Identities=34% Similarity=0.438 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 908 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 908 ~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
.+|..||.+....++|++|+.-|++||.+.++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999988754
No 362
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=82.84 E-value=3.9 Score=39.41 Aligned_cols=69 Identities=22% Similarity=0.256 Sum_probs=48.1
Q ss_pred eEEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCC---cccccc--cCCceEEEe
Q 000230 28 VTEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKD---SVDVVS--LKPCHLTVE 98 (1822)
Q Consensus 28 ~~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d---~~el~~--lk~~~L~lV 98 (1822)
...|.|.+|++..++-.-.++|+|+||++++..+... -..|.|...+-...|.| ...|.+ |.++.+-|+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~--~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s~~~~~ 75 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP--AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNEVVFQR 75 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC--CCCEEEEeCCCCccCCCCCccCcHHHcCCccceEEEE
Confidence 4579999999999999999999999999999865432 56688863334455654 333333 345555443
No 363
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=82.56 E-value=2.5 Score=35.52 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCC
Q 000230 1034 ASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSE 1070 (1822)
Q Consensus 1034 ~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~d 1070 (1822)
.+|..||.+-...++|.+|+.-|++|+.|.++.+.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 4678899999999999999999999999999888653
No 364
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=81.64 E-value=1.2e+02 Score=37.37 Aligned_cols=131 Identities=12% Similarity=0.045 Sum_probs=81.5
Q ss_pred HHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc
Q 000230 883 DAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL 962 (1822)
Q Consensus 883 eAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~l 962 (1822)
+-++-+.++++-.+...|. .+...++.+.|.-|.+.||.+.|++.+++...-.-.+ ....++.-....||.+|...
T Consensus 82 eki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D~ 157 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLDH 157 (393)
T ss_pred HHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhccH
Confidence 3344455555555554553 4778899999999999999999999988865532211 22356677778889888655
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000230 963 QHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQ 1022 (1822)
Q Consensus 963 G~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~ 1022 (1822)
.-..+ ..++|-.+.++ |-|....-+.-..-|..+....+|.+|-.+|-.++..+.
T Consensus 158 ~lV~~---~iekak~liE~--GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 158 DLVTE---SIEKAKSLIEE--GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHH---HHHHHHHHHHh--CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 33333 33333334333 222222222223346667777889999998888876543
No 365
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.43 E-value=1.3e+02 Score=36.12 Aligned_cols=204 Identities=10% Similarity=-0.013 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhcCCC
Q 000230 866 RTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFN-QATIYQQKALDINERELGLD 944 (1822)
Q Consensus 866 ~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~e-eAle~~qkAL~i~er~lG~d 944 (1822)
+.++.-+..++..|++.-|.++..-.++.+.+.. .+........|+.++...+.-+ +-..+.++|+.-. + .|..
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~---~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~~ 85 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSE---DPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-K-FGSY 85 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-H-TSS-
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-c-cCCC
Confidence 4466677889999999999998888887776632 1222334567777777776443 4556777777777 3 3443
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------HHHHHHhcCCCChhHHHHHH-HHHHHHHHCCCHHHHHH
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRA-----------LYLLHLTCGPSHPNTAATYI-NVAMMEEGLGNVHVALR 1012 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rA-----------L~l~~~i~G~dhP~~a~al~-nLA~iy~~lGd~eeAl~ 1012 (1822)
.......+..+|..|...|++.+|..+|-.+ +..+... |. +.....+. ..-..|..+++...|..
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~-~~--~~e~dlfi~RaVL~yL~l~n~~~A~~ 162 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK-GY--PSEADLFIARAVLQYLCLGNLRDANE 162 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-TS--S--HHHHHHHHHHHHHHTTBHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-cC--CcchhHHHHHHHHHHHHhcCHHHHHH
Confidence 3344567888999999999999999887421 1112222 21 22222333 33356778899999988
Q ss_pred HHHHHHHHHHHh----------hCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000230 1013 YLHEALKCNQRL----------LGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLE 1082 (1822)
Q Consensus 1013 ~leeALei~~~~----------~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~ 1082 (1822)
.+..-++..... +....|..-.+++.+-.+ ..+ +...|+...+.|+..+.. ++.....+..++
T Consensus 163 ~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~--e~~----~~~~F~~L~~~Y~~~L~r-d~~~~~~L~~IG 235 (260)
T PF04190_consen 163 LFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTC--ERD----NLPLFKKLCEKYKPSLKR-DPSFKEYLDKIG 235 (260)
T ss_dssp HHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHH--HHT-----HHHHHHHHHHTHH---H-HHHTHHHHHHHH
T ss_pred HHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHH--hcC----cHHHHHHHHHHhCccccc-cHHHHHHHHHHH
Confidence 887666553222 112334332232222222 222 346666666666655532 344444444444
Q ss_pred HH
Q 000230 1083 YF 1084 (1822)
Q Consensus 1083 ~l 1084 (1822)
..
T Consensus 236 ~~ 237 (260)
T PF04190_consen 236 QL 237 (260)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 366
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=81.43 E-value=1.7e+02 Score=37.52 Aligned_cols=135 Identities=16% Similarity=0.107 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHHHHcCC-hHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHH--HHHHHHH--H
Q 000230 863 ADGRTLLESSKTSLDKGK-LEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIY--QQKALDI--N 937 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~-yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~--~qkAL~i--~ 937 (1822)
..+..+...|.-++..|. -++|+++++.++.... | +. .|.+.. ..+-...|.+|+.. +-+.+.+ +
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~------y-D~-ec~n~v--~~fvKq~Y~qaLs~~~~~rLlkLe~f 446 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTN------Y-DI-ECENIV--FLFVKQAYKQALSMHAIPRLLKLEDF 446 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcc------c-cH-HHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 346677788888999988 7889999998887621 1 21 222211 11112234444432 2222222 1
Q ss_pred HHhcCCCChh--hHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHH
Q 000230 938 ERELGLDHPD--TMKSYGD--LAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRY 1013 (1822)
Q Consensus 938 er~lG~dhp~--ta~ay~n--LA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~ 1013 (1822)
-...|..... -...-+. =|.+++.+|+|.++.-|.....++. | ...++.-+|.++....+|++|..+
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~ia--------P-S~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIA--------P-SPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--------C-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 1122322111 1122233 3667889999999998887777663 4 446788899999999999999998
Q ss_pred HHH
Q 000230 1014 LHE 1016 (1822)
Q Consensus 1014 lee 1016 (1822)
+..
T Consensus 518 l~~ 520 (549)
T PF07079_consen 518 LQK 520 (549)
T ss_pred HHh
Confidence 864
No 367
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=81.39 E-value=1.8 Score=40.94 Aligned_cols=68 Identities=16% Similarity=0.104 Sum_probs=55.5
Q ss_pred EEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCcccccccC---CceEEEe
Q 000230 29 TEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSLK---PCHLTVE 98 (1822)
Q Consensus 29 ~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~lk---~~~L~lV 98 (1822)
++|+|+.+++..+.++|.++++|..|.+.+........-+.|-|. ++|.+|++-..+.++. +..|.|+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~--fdG~~L~~~~T~~~~~ied~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLI--FDGKRLDPNDTPEDLGIEDGDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEE--ETTEEE-TTSCHHHHT-STTEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEE--ECCEEcCCCCCHHHCCCCCCCEEEEE
Confidence 578999998889999999999999999999888775555888886 6999999998888753 5666654
No 368
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=81.28 E-value=20 Score=37.94 Aligned_cols=99 Identities=10% Similarity=-0.026 Sum_probs=68.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCc-------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Q 000230 994 YINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADH-------IQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAK 1066 (1822)
Q Consensus 994 l~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dh-------p~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~ 1066 (1822)
+..+|..-...+++-.|+-+|++|+.+.++...... .......+|||..|+.+||.+=.+.|++-|-+.-..+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 456788888899999999999999999887732111 1123567899999999999999999999887765544
Q ss_pred hCCCCHHH--HHHHHHHHHHHHHHHHHHH
Q 000230 1067 LGSEDLRT--QDAAAWLEYFESKALEQQE 1093 (1822)
Q Consensus 1067 LG~dhp~t--~~a~~~L~~l~qqAl~~qe 1093 (1822)
.. .-|++ -.....|+-.....+++.+
T Consensus 84 iP-QCp~~~C~afi~sLGCCk~ALl~F~K 111 (140)
T PF10952_consen 84 IP-QCPNTECEAFIDSLGCCKKALLDFMK 111 (140)
T ss_pred cc-CCCCcchHHHHHhhhccHHHHHHHHH
Confidence 33 33332 2224455555544444444
No 369
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=80.76 E-value=2.9 Score=52.77 Aligned_cols=70 Identities=17% Similarity=0.296 Sum_probs=62.3
Q ss_pred ceEEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCcccccc--cC-CceEEEecc
Q 000230 27 TVTEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVS--LK-PCHLTVEEE 100 (1822)
Q Consensus 27 ~~~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~--lk-~~~L~lVee 100 (1822)
..+.|+||+|.. +.+|+|..+..|++++..|..+. .|+--..-|- +.|..|+|--+|.. |+ |++++||-.
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f-~a~~dqlvLI--faGrILKD~dTL~~~gI~Dg~TvHLVik 86 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRF-GAPPDQLVLI--YAGRILKDDDTLKQYGIQDGHTVHLVIK 86 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhc-CCChhHeeee--ecCccccChhhHHHcCCCCCcEEEEEec
Confidence 469999999999 99999999999999999999998 8888888886 59999999999987 55 699999843
No 370
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.24 E-value=2.4 Score=33.14 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 909 AYSLLAVVLYHTGDFNQATIYQQKALDI 936 (1822)
Q Consensus 909 al~nLA~ly~~lGd~eeAle~~qkAL~i 936 (1822)
+++.+|.+|..+|++++|+.++++.+..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6889999999999999999999999875
No 371
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.17 E-value=78 Score=41.38 Aligned_cols=172 Identities=15% Similarity=0.024 Sum_probs=98.4
Q ss_pred hHHHHHHHHhhhhhhhh----ccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-------------
Q 000230 881 LEDAVNYGSKALSKLMS----VCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL------------- 943 (1822)
Q Consensus 881 yeeAie~~~eAL~l~~~----i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~------------- 943 (1822)
|++|...|.-|...+.- +.-..+|.....+..+|.+...+|+.+-|..+.+++|-.+++.+-+
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y 333 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPY 333 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcc
Confidence 44555555554443211 0112467778889999999999999999999999999999887532
Q ss_pred CChhhHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000230 944 DHPDTMK---SYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPS-HPNTAATYINVAMMEEGLGNVHVALRYLHEALK 1019 (1822)
Q Consensus 944 dhp~ta~---ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~d-hP~~a~al~nLA~iy~~lGd~eeAl~~leeALe 1019 (1822)
.++..-. +++..-..+.+.|-+..|+++++-.+.+ .+. +|.-+ ++.+-.......+|+--+++++..-.
T Consensus 334 ~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL-----dp~eDPl~~--l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 334 IYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL-----DPSEDPLGI--LYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-----CCcCCchhH--HHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 1222222 2222333445667788888877766554 222 44332 23333333455566655666655422
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHH
Q 000230 1020 CNQRLLGADHIQTAASYHAIAIALSLMEA---YSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1020 i~~~~~G~dhp~tA~~l~nLA~~y~~lGd---~eeAi~~lekAL~I~ 1063 (1822)
.. .+. .-|..+.+ ..||..|..... .+.|...+.+|+.++
T Consensus 407 ~n-~l~--~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 407 MN-KLS--QLPNFGYS-LALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred hc-cHh--hcCCchHH-HHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 21 111 11222222 234556655554 567888888888863
No 372
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=80.01 E-value=18 Score=45.03 Aligned_cols=107 Identities=14% Similarity=0.087 Sum_probs=76.8
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhhhhhcc--C----CCchhHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000230 871 SSKTSLDKGKLEDAVNYGSKALSKLMSVC--G----PYHRMTA----GAYSLLAVVLYHTGDFNQATIYQQKALDINERE 940 (1822)
Q Consensus 871 lG~~~~~~G~yeeAie~~~eAL~l~~~i~--G----~dhp~~a----~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~ 940 (1822)
-|..++.+++|..|.--|..||+++.... + +.+-+++ .....|..||..+++.+-|+....+++.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l---- 257 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL---- 257 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc----
Confidence 34555566666666666666666655431 1 1122222 23457899999999999999999998876
Q ss_pred cCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 941 LGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGP 985 (1822)
Q Consensus 941 lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~ 985 (1822)
+|.+..-+..-|.++..+.+|.+|-+-+.-|..++-...|.
T Consensus 258 ----nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~ 298 (569)
T PF15015_consen 258 ----NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGS 298 (569)
T ss_pred ----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 46667777788999999999999999998888887655443
No 373
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.36 E-value=22 Score=52.68 Aligned_cols=110 Identities=15% Similarity=0.061 Sum_probs=82.9
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000230 903 HRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLT 982 (1822)
Q Consensus 903 hp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i 982 (1822)
...++.+|..+|++.+..|+++.|..+.-+|.+. ....++...|..+...|+-..|+.++++.+..+..-
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~----------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKES----------RLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc----------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 5678999999999999999999999998888775 256788999999999999999999999999776432
Q ss_pred c-CC--------CChhHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHH
Q 000230 983 C-GP--------SHPNTAATYINVAMMEEGLGNVH--VALRYLHEALKCNQ 1022 (1822)
Q Consensus 983 ~-G~--------dhP~~a~al~nLA~iy~~lGd~e--eAl~~leeALei~~ 1022 (1822)
+ ++ ++.....+...++......|+++ .-+++|.+|.++..
T Consensus 1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred ccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 1 11 11222335556666666667653 45678888887754
No 374
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.24 E-value=2.7 Score=32.81 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 951 SYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 951 ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
+++++|.++..+|++++|+.+|++.+..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6889999999999999999999999875
No 375
>PRK14707 hypothetical protein; Provisional
Probab=78.77 E-value=2.3e+02 Score=42.56 Aligned_cols=180 Identities=12% Similarity=-0.031 Sum_probs=111.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 869 LESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAY--SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 946 (1822)
Q Consensus 869 ~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al--~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp 946 (1822)
..+++++...++|-+.-.+-.-+..+...+- .++..-..+ ..++.++..+.+|.++-.+-.-++.+..++-+. +
T Consensus 961 Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~--~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~e--p 1036 (2710)
T PRK14707 961 SNLPQVLNALSKWPDVPAGGEVVDALAERLV--DEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSND--P 1036 (2710)
T ss_pred HHHHHHHhhhccCCCchHHHHHHHHHHHHHh--ccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhccC--H
Confidence 3466777777777766555555544444331 122222222 356777777778877777777777777776332 3
Q ss_pred hhHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Q 000230 947 DTMK--SYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRL 1024 (1822)
Q Consensus 947 ~ta~--ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~ 1024 (1822)
.... .-..++.++..+.+|.+.-.+-.-+..+...+....+...+..-..++.++..+-+|.+.-.+-+.++.+..++
T Consensus 1037 ~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL 1116 (2710)
T PRK14707 1037 GLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRL 1116 (2710)
T ss_pred hhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 3322 23567888888888877777766666666665532222334445677888888888888888888888888877
Q ss_pred hCCCcHHHHHHHHHHHHHHHHccCHHHH
Q 000230 1025 LGADHIQTAASYHAIAIALSLMEAYSLS 1052 (1822)
Q Consensus 1025 ~G~dhp~tA~~l~nLA~~y~~lGd~eeA 1052 (1822)
-...++..+.....++.++..+.++-..
T Consensus 1117 ~~~~~l~~~fd~q~vA~~LNALSKWp~~ 1144 (2710)
T PRK14707 1117 TDDAGLRHVFDPINVSQALNALSKWPGT 1144 (2710)
T ss_pred ccccchhccCCHHHHHHHHHHHhcCCCc
Confidence 5555555554555556666555555443
No 376
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=78.73 E-value=94 Score=43.75 Aligned_cols=59 Identities=12% Similarity=0.068 Sum_probs=31.4
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 000230 1002 EGLGNVHVALRYLHEALKCNQRLLG--ADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTL 1060 (1822)
Q Consensus 1002 ~~lGd~eeAl~~leeALei~~~~~G--~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL 1060 (1822)
.+.|-|.+|+.+|.--.+..+.++- .+|...-.-+..-|.+|...|+.++|+..|+.+.
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~ 979 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECG 979 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhc
Confidence 3456666666666543333322210 1122222223345677778888888888776553
No 377
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=78.12 E-value=2.9 Score=30.76 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 908 GAYSLLAVVLYHTGDFNQATIYQQKALDI 936 (1822)
Q Consensus 908 ~al~nLA~ly~~lGd~eeAle~~qkAL~i 936 (1822)
.++..+|.++..++++++|+.++++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46789999999999999999999999875
No 378
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=77.68 E-value=1e+02 Score=38.84 Aligned_cols=36 Identities=8% Similarity=-0.090 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 000230 1030 IQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQA 1065 (1822)
Q Consensus 1030 p~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~ 1065 (1822)
...+.+++..|......+++-+++.+++.|...++.
T Consensus 249 ~f~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~~ 284 (361)
T cd09239 249 YYASIAHLHMGKQSEEQQKMGERVAYYQLANDKLEE 284 (361)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888999999999988876543
No 379
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=77.34 E-value=24 Score=41.74 Aligned_cols=62 Identities=24% Similarity=0.275 Sum_probs=50.4
Q ss_pred HHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Q 000230 884 AVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR 961 (1822)
Q Consensus 884 Aie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~ 961 (1822)
|+.+|.+|+.+ .|..+..|+.||.++...|+.-.|+-+|-+++.. .+|. ..+..||..++..
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 78899999998 6888999999999999999999999999999864 2454 6677888888776
No 380
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=77.10 E-value=62 Score=40.94 Aligned_cols=138 Identities=17% Similarity=0.106 Sum_probs=74.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000230 910 YSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY--YRLQHTELALKYVNRALYLLHLTCGPSH 987 (1822)
Q Consensus 910 l~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy--~~lG~~eeAl~~~~rAL~l~~~i~G~dh 987 (1822)
....+..++..++|..|...+...+.. +-+... ...+..|+..| ...-+|.+|.++++..+.....+
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~---~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l----- 202 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRR---LPGREE---YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL----- 202 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh-----
Confidence 345566677889999999999887753 212111 45566665544 56788999999999877653220
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 000230 988 PNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQA 1065 (1822)
Q Consensus 988 P~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~ 1065 (1822)
......+..+..+... ...+...+.........-.......++..|.--...|+|+.|+..+-++++++-+
T Consensus 203 ~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 203 NQEREGLKELVEVLKA-------LESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred HhHHHHHHHHHHHHHH-------HHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 0111112222222222 2222222221111000001223333444444445789999999999899887644
No 381
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=76.65 E-value=41 Score=43.38 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=53.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000230 868 LLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 947 (1822)
Q Consensus 868 L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ 947 (1822)
...++..+..+|.++.|+++.+.-- ..+.| ..+.|+++.|.+..++ .+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~----------------~rFeL---Al~lg~L~~A~~~a~~-------------~~ 345 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD----------------HRFEL---ALQLGNLDIALEIAKE-------------LD 345 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH----------------HHHHH---HHHCT-HHHHHHHCCC-------------CS
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH----------------HHhHH---HHhcCCHHHHHHHHHh-------------cC
Confidence 3445667777777777766543321 12222 3456676666555432 12
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000230 948 TMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVH 1008 (1822)
Q Consensus 948 ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~e 1008 (1822)
....|..||.....+|+++-|.++|+++-+. ..|..+|.-.|+.+
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~----------------~~L~lLy~~~g~~~ 390 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAKDF----------------SGLLLLYSSTGDRE 390 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT-H----------------HHHHHHHHHCT-HH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc----------------cccHHHHHHhCCHH
Confidence 3346788888888888888888888876432 34555666677743
No 382
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.64 E-value=3.4 Score=30.37 Aligned_cols=29 Identities=31% Similarity=0.438 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 950 KSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 950 ~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
.++.++|.++..++++++|+.++++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46789999999999999999999999875
No 383
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=76.39 E-value=8.4 Score=37.48 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=41.8
Q ss_pred eEEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCc
Q 000230 28 VTEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDS 84 (1822)
Q Consensus 28 ~~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~ 84 (1822)
...|.|.+|++..++....++|+|.||++++.... ......|.|...+-...|.+.
T Consensus 4 ~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~-~~~~~~f~L~t~~Prk~l~~~ 59 (80)
T smart00166 4 QCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAAL-TDGNDPFTLNSPFPRRTFTKD 59 (80)
T ss_pred eEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcc-cCCCCCEEEEeCCCCcCCccc
Confidence 46899999999999999999999999999994332 223456888633444566543
No 384
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=75.88 E-value=62 Score=39.19 Aligned_cols=154 Identities=16% Similarity=0.073 Sum_probs=98.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHH-----------H-HHHHHHHH--HHcCCHHHHHHHHHHHH
Q 000230 911 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMK-----------S-YGDLAVFY--YRLQHTELALKYVNRAL 976 (1822)
Q Consensus 911 ~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~-----------a-y~nLA~iy--~~lG~~eeAl~~~~rAL 976 (1822)
-.++.+++..-+-..|...++.++-..++++|.++.-+.. . -..++.+. ...|....+...++++.
T Consensus 44 e~l~~llWe~~~~~~Ar~nLR~~l~~lRk~l~~~~~il~t~~~~~~L~~~~~~~iD~~~F~~~~~a~~~~~~~~~~~~~~ 123 (280)
T COG3629 44 EKLAGLLWEDSDPSRARANLRTTLHNLRKLLGDGDVILATEGPGVTLNPGADITIDAGRFEAEARAGLKARAGLRFEQAG 123 (280)
T ss_pred HHHHHhccCCCChhHHHHHHHHHHHHHHHhcCCcceeeecCCCceEecCccceeecHHHHHHhHhcccchhhhHHHHHHH
Confidence 3456666777777788888888888888887732211100 0 01122221 11222222233334444
Q ss_pred HHHHH--hcCCCC-------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 000230 977 YLLHL--TCGPSH-------------PNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAI 1041 (1822)
Q Consensus 977 ~l~~~--i~G~dh-------------P~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~ 1041 (1822)
..+.. ..+++| .....++..++..+...|+++.++..+++.+.+ +|..-..|..|-.
T Consensus 124 ~~~~~g~~~~d~~f~~WV~~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~ 195 (280)
T COG3629 124 ELLSEGPVLGDDRFDEWVLEQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLME 195 (280)
T ss_pred HHhhcCCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHH
Confidence 33331 111111 123557788888999999999999998887765 5666677888899
Q ss_pred HHHHccCHHHHHHHHHHHHHHHHHHhCCCCH
Q 000230 1042 ALSLMEAYSLSVQHEQTTLQILQAKLGSEDL 1072 (1822)
Q Consensus 1042 ~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp 1072 (1822)
+|...|+...|+..|++.......-+|.+-.
T Consensus 196 ~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~ 226 (280)
T COG3629 196 AYLVNGRQSAAIRAYRQLKKTLAEELGIDPA 226 (280)
T ss_pred HHHHcCCchHHHHHHHHHHHHhhhhcCCCcc
Confidence 9999999999999999999988888887654
No 385
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=75.68 E-value=50 Score=40.35 Aligned_cols=129 Identities=9% Similarity=0.073 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000230 925 QATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGL 1004 (1822)
Q Consensus 925 eAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~l 1004 (1822)
+-++-+.++++-.++.+|. .+...++.+.|.+|++.|+-+.|++.+.+...-.-.+. ...++.-+...+|.+|...
T Consensus 82 eki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g--~kiDVvf~~iRlglfy~D~ 157 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG--HKIDVVFYKIRLGLFYLDH 157 (393)
T ss_pred HHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc--cchhhHHHHHHHHHhhccH
Confidence 4445556666666665554 56788999999999999999999999988776543332 2356667778888888654
Q ss_pred CCHHHHHHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 1005 GNVHVALRYLHEALKCNQRLLGA-DHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1005 Gd~eeAl~~leeALei~~~~~G~-dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
+--.+.+++|-.+.++- |. +..+...+| .|.......+|.+|..+|-.++.-|
T Consensus 158 ---~lV~~~iekak~liE~G-gDWeRrNRlKvY--~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 158 ---DLVTESIEKAKSLIEEG-GDWERRNRLKVY--QGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred ---HHHHHHHHHHHHHHHhC-CChhhhhhHHHH--HHHHHHHHHhHHHHHHHHHHHcccc
Confidence 33333444444444331 21 122233333 4666667788888888887776543
No 386
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.58 E-value=53 Score=36.93 Aligned_cols=147 Identities=11% Similarity=-0.007 Sum_probs=94.7
Q ss_pred HHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000230 873 KTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 952 (1822)
Q Consensus 873 ~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay 952 (1822)
..|++.+.-..+-+-|..||++.. .+..++|+.-|...- +. |. -.+-..+.
T Consensus 47 y~yw~~s~as~sgd~flaAL~lA~-----------------------~~k~d~Alaaf~~le----kt-g~-g~YpvLA~ 97 (221)
T COG4649 47 YTYWQTSRASKSGDAFLAALKLAQ-----------------------ENKTDDALAAFTDLE----KT-GY-GSYPVLAR 97 (221)
T ss_pred eehhcccccccchHHHHHHHHHHH-----------------------cCCchHHHHHHHHHH----hc-CC-CcchHHHH
Confidence 445555666666666666665532 244455555544322 11 11 12234567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcH
Q 000230 953 GDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTA--ATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHI 1030 (1822)
Q Consensus 953 ~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a--~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp 1030 (1822)
+..|.+....|+...|+.+|.++-.-. ..|... .+...-|.++...|-|+.-... .+.+-++.++
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd~ARlraa~lLvD~gsy~dV~sr-------vepLa~d~n~ 164 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRDLARLRAAYLLVDNGSYDDVSSR-------VEPLAGDGNP 164 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhHHHHHHHHHHHhccccHHHHHHH-------hhhccCCCCh
Confidence 788889999999999999988764321 233333 2334456677788887654433 3344567788
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 1031 QTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1031 ~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
....+...||.+-++.|++.+|..+|.+...
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8888999999999999999999999976554
No 387
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=75.40 E-value=42 Score=35.10 Aligned_cols=102 Identities=19% Similarity=0.185 Sum_probs=64.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHhhCCCcH
Q 000230 955 LAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEG----LGNVHVALRYLHEALKCNQRLLGADHI 1030 (1822)
Q Consensus 955 LA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~----lGd~eeAl~~leeALei~~~~~G~dhp 1030 (1822)
+|.-++..|++-+|+++.+..+... |.+. .....+...|.++.. ..+.+-=..|+.-+++.+.+..+ -+|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h----~~~~-~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH----GEDE-SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc----cCCC-chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence 4677899999999999999987653 3222 122334445555543 33555556677777777665433 246
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Q 000230 1031 QTAASYHAIAIALSLMEAYSLSVQHEQTTLQI 1062 (1822)
Q Consensus 1031 ~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I 1062 (1822)
..|..++.||.-+...-.|++++...++++.+
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 66888888887766555566666666655543
No 388
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=75.09 E-value=2.1e+02 Score=35.10 Aligned_cols=115 Identities=12% Similarity=-0.019 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000230 912 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTA 991 (1822)
Q Consensus 912 nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a 991 (1822)
.+-...++-.+..+-+.....||+| ++..+.+|..||.-. .--..+|.+++++||+..+..+
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~y-------- 250 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIY-------- 250 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHH--------
Confidence 3444445555666777778888887 477888888877543 3346789999999988755433
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 992 ATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 992 ~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
+-....+..|...+|.. ..+......+...||.+..++|+.++|+..++...+
T Consensus 251 ----r~sqq~qh~~~~~da~~-------------rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 251 ----RQSQQCQHQSPQHEAQL-------------RRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred ----hhHHHHhhhccchhhhh-------------hcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 12222223333222211 112222344566789999999999999998876544
No 389
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.56 E-value=40 Score=45.48 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=39.2
Q ss_pred HHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000230 875 SLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDIN 937 (1822)
Q Consensus 875 ~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~ 937 (1822)
+++...|.-|+.+.+.- +.+...++.++...|.-++..|++++|..+|-+++...
T Consensus 344 L~kK~ly~~Ai~LAk~~--------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 344 LFKKNLYKVAINLAKSQ--------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHhhhHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 34445566666554321 12334567888899999999999999999999988764
No 390
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.29 E-value=21 Score=39.57 Aligned_cols=87 Identities=17% Similarity=0.086 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
....|.++..+-...++.+++..++.-. ..+ .|.....-..-|+++...|+|.+|+.+++....
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~AL-rvL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~-------- 72 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDAL-RVL-------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE-------- 72 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHH-HHh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc--------
Confidence 3456788888888899999988877544 332 567777778889999999999999999988533
Q ss_pred CChhhHHHHHHHHHHHHHcCCHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQHTE 966 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~~e 966 (1822)
+.+....+--.|+.|++.+|+..
T Consensus 73 ~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred cCCCChHHHHHHHHHHHHcCChH
Confidence 34666666677888888888754
No 391
>PRK10941 hypothetical protein; Provisional
Probab=74.09 E-value=20 Score=43.13 Aligned_cols=82 Identities=20% Similarity=0.152 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCC
Q 000230 948 TMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGA 1027 (1822)
Q Consensus 948 ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~ 1027 (1822)
+...+.||-.+|...++++.|+.+.++.+.+ .+++|. -+...|.+|.++|.+..|..-|+.-++.+ +
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l-----~P~dp~---e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P 246 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQF-----DPEDPY---EIRDRGLIYAQLDCEHVALSDLSYFVEQC-----P 246 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----C
Confidence 3456789999999999999999999999876 345553 45668999999999999999999888775 5
Q ss_pred CcHHHHHHHHHHHHH
Q 000230 1028 DHIQTAASYHAIAIA 1042 (1822)
Q Consensus 1028 dhp~tA~~l~nLA~~ 1042 (1822)
+.+....+...+..+
T Consensus 247 ~dp~a~~ik~ql~~l 261 (269)
T PRK10941 247 EDPISEMIRAQIHSI 261 (269)
T ss_pred CchhHHHHHHHHHHH
Confidence 666665555554443
No 392
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=73.88 E-value=1.4e+02 Score=36.96 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Q 000230 1030 IQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAK 1066 (1822)
Q Consensus 1030 p~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~ 1066 (1822)
...+.+++.+|..+...+++.+|+.+++.|...++..
T Consensus 248 ~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~ 284 (345)
T cd09034 248 IFKALAYYYHGLKLDEANKIGEAIARLQAALELLKES 284 (345)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 3466777888888888889999999999998876543
No 393
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=73.81 E-value=1.2e+02 Score=37.92 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Q 000230 1031 QTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAK 1066 (1822)
Q Consensus 1031 ~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~ 1066 (1822)
..+.+++..|..+...+++-+|+.+++.|...++..
T Consensus 253 f~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~a 288 (346)
T cd09240 253 FHALAEYHQSLVAKAQKKFGEEIARLQHALELIKTA 288 (346)
T ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 456777888888889999999999999999876543
No 394
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=73.76 E-value=1.1e+02 Score=42.97 Aligned_cols=101 Identities=13% Similarity=-0.014 Sum_probs=59.0
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH------HHhhCCCcHH
Q 000230 960 YRLQHTELALKYVNRALYLLHLTC--GPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN------QRLLGADHIQ 1031 (1822)
Q Consensus 960 ~~lG~~eeAl~~~~rAL~l~~~i~--G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~------~~~~G~dhp~ 1031 (1822)
...|.|.+|+.+|.--.+..+.++ -.+|...-.-+...|.+|...|+.++|+..|+.+.... .+.. ..--.
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~-~~~de 997 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLS-EGKDE 997 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhc-CCHHH
Confidence 345667777766654444333332 01233333445677889999999999999988665433 2221 11122
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 1032 TAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1032 tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
....-..|+.-+..++++-+|.+...+.+.
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 333335566777777887777776666554
No 395
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.06 E-value=12 Score=33.89 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 908 GAYSLLAVVLYHTGDFNQATIYQQKALDI 936 (1822)
Q Consensus 908 ~al~nLA~ly~~lGd~eeAle~~qkAL~i 936 (1822)
.+++.||..++.+|+|.+|..+.+.+|.+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 47899999999999999999999999998
No 396
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.01 E-value=16 Score=45.60 Aligned_cols=107 Identities=21% Similarity=0.156 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL 943 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~ 943 (1822)
.-+.+..+|.-|...|+++.|++.|.++-..+.+ ...++..+.++-.+...+|+|..-..|-.+|..........
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~ 223 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENL 223 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhH
Confidence 3456888999999999999999999997665433 34677888999999999999999888888887652100000
Q ss_pred CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000230 944 DHPDTMKSYGDLAVFYYRLQHTELALKYVNRA 975 (1822)
Q Consensus 944 dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rA 975 (1822)
...-...+...-|.+...++.|..|.+++-.+
T Consensus 224 ~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 224 AQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 00111223444455555666888888887655
No 397
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.90 E-value=2.1e+02 Score=34.65 Aligned_cols=125 Identities=14% Similarity=0.105 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 907 AGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPS 986 (1822)
Q Consensus 907 a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~d 986 (1822)
..+|..|...|..+..++.|+++ ...=+.++++.++..-|..+.-..++.++.. .
T Consensus 26 hqm~RTl~fR~~~~K~~~~aieL----------------------~~~ga~~ffk~~Q~~saaDl~~~~le~~eka---~ 80 (312)
T KOG3024|consen 26 HQMYRTLVFRYTRQKAHEDAIEL----------------------LYDGALCFFKLKQRGSAADLLVLVLEVLEKA---E 80 (312)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHH----------------------HHHHHHHHHHhccCCCchhHHHHHHHHHHHH---H
Confidence 34455555555555555555553 3333344444444444444444444433331 0
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 000230 987 HPNTAATYINVAMMEEGLGNVHVAL-RYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQ 1057 (1822)
Q Consensus 987 hP~~a~al~nLA~iy~~lGd~eeAl-~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~le 1057 (1822)
..+.....-|++.++...+.-+..+ .+.+.+++...+ +|.........+..||..+..-++..+|..||-
T Consensus 81 ~ad~~~~~anl~~ll~e~~~~eper~~~v~raikWS~~-~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFl 151 (312)
T KOG3024|consen 81 VADSLLKVANLAELLGEADPSEPERKTFVRRAIKWSKE-FGEGKYGHPELHALLADKLWTEDNVEEARRHFL 151 (312)
T ss_pred hhHhHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhh
Confidence 1111122245666666655544444 455666666554 332222334567888999999999999999994
No 398
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.74 E-value=1.2e+02 Score=34.23 Aligned_cols=129 Identities=12% Similarity=0.019 Sum_probs=92.8
Q ss_pred HHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhH--
Q 000230 872 SKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTM-- 949 (1822)
Q Consensus 872 G~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta-- 949 (1822)
+.-+-+.|..++|+.-|...-.- -+|. .| ..+.+..|.+....|+...|+.+|..+-... ..|...
T Consensus 65 AL~lA~~~k~d~Alaaf~~lekt---g~g~-Yp--vLA~mr~at~~a~kgdta~AV~aFdeia~dt------~~P~~~rd 132 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKT---GYGS-YP--VLARMRAATLLAQKGDTAAAVAAFDEIAADT------SIPQIGRD 132 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhc---CCCc-ch--HHHHHHHHHHHhhcccHHHHHHHHHHHhccC------CCcchhhH
Confidence 34455678889998887665432 2332 23 3456778999999999999999998865431 224333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000230 950 KSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALK 1019 (1822)
Q Consensus 950 ~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALe 1019 (1822)
.+...-|.++...|-|++-... .+.+-++.+|....+.-.||..-++.|+|..|.++|.+...
T Consensus 133 ~ARlraa~lLvD~gsy~dV~sr-------vepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 133 LARLRAAYLLVDNGSYDDVSSR-------VEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHHhccccHHHHHHH-------hhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3445567777888888765443 34456778898889999999999999999999999987654
No 399
>PF07145 PAM2: Ataxin-2 C-terminal region; InterPro: IPR009818 This entry represents a conserved region approximately 250 residues long located towards the C terminus of eukaryotic ataxin-2. Ataxin-2 is a protein of unknown function, within which expansion of a polyglutamine tract (due to expansion of unstable CAG repeats in the coding region of the SCA2 gene) causes spinocerebellar ataxia type 2 (SCA2), a late-onset neurodegenerative disorder []. The expanded polyglutamine repeat in ataxin-2 causes disruption of the normal morphology of the Golgi complex and increased incidence of cell death []. Ataxin-2 is predicted to consist of mostly non-globular domains [].; PDB: 3NTW_B 1JH4_B 3KTR_B 3KUJ_B 3KUT_D 3KUS_D 1JGN_B 2RQG_A 2RQH_A.
Probab=72.71 E-value=1.9 Score=30.34 Aligned_cols=14 Identities=57% Similarity=0.947 Sum_probs=10.8
Q ss_pred CcCCCCcccccCCC
Q 000230 1656 RIMNPHAAEFVPSQ 1669 (1822)
Q Consensus 1656 ~~~~p~a~~~vp~~ 1669 (1822)
..-||+|.||||..
T Consensus 4 s~LNp~A~eFvP~~ 17 (18)
T PF07145_consen 4 SKLNPNAPEFVPSS 17 (18)
T ss_dssp SSSSTTSSSS-TTT
T ss_pred cccCCCCccccCCC
Confidence 46799999999974
No 400
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.50 E-value=35 Score=41.04 Aligned_cols=77 Identities=23% Similarity=0.295 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 946 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp 946 (1822)
.+...+..|...|.+.+|+++.++++.+ ||..-..+..|-.+|..+||--.|...|++--...++-+|.+-.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 3555688899999999999999999987 77777888899999999999999999999999999998888655
Q ss_pred hhHHH
Q 000230 947 DTMKS 951 (1822)
Q Consensus 947 ~ta~a 951 (1822)
+.+.-
T Consensus 353 dsiee 357 (361)
T COG3947 353 DSIEE 357 (361)
T ss_pred hhHHH
Confidence 54433
No 401
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=72.31 E-value=1.6e+02 Score=38.91 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 000230 1034 ASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFESKALE 1090 (1822)
Q Consensus 1034 ~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~qqAl~ 1090 (1822)
..|+..|+.+....+|++|.+.|.+|- +++++..-|.++...++.
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfhkAG------------r~~EA~~vLeQLtnnav~ 849 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFHKAG------------RQREAVQVLEQLTNNAVA 849 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHHHhc------------chHHHHHHHHHhhhhhhh
Confidence 456777888889999999988887663 345566666666554443
No 402
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=72.07 E-value=2.7e+02 Score=34.98 Aligned_cols=35 Identities=14% Similarity=0.018 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 000230 1030 IQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQ 1064 (1822)
Q Consensus 1030 p~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k 1064 (1822)
...+.+++..|..+...+++-+|+.+++.|...+.
T Consensus 244 ~f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~ 278 (353)
T cd09246 244 YFRAEALYRAAKDLHEKEDIGEEIARLRAASDALA 278 (353)
T ss_pred HHHHHHHHHHHHHhHHhcchHHHHHHHHHHHHHHH
Confidence 35677788888888889999999999999977543
No 403
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=70.94 E-value=76 Score=38.18 Aligned_cols=131 Identities=10% Similarity=0.088 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000230 924 NQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEG 1003 (1822)
Q Consensus 924 eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~ 1003 (1822)
++-++-+.++++-.+...| ..+.+.++.|+|.+|.+.++.+.+.+.+.+.+.-..... -..++..+...||.+|..
T Consensus 92 eeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg--~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 92 EEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTG--LKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--cchhhHHHHHHHHHhhcc
Confidence 4455556555555544332 346788999999999999999999999998877654332 245666777788888866
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 1004 LGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1004 lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
+.-.++.++... .+.++ |.+-...-..-...|.......+|.+|..++-..+.-|
T Consensus 168 ~~vV~e~lE~~~---~~iEk--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 168 RKVVEESLEVAD---DIIEK--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHH---HHHHh--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 544444433333 23222 22211111222224666666777888877777666544
No 404
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=70.47 E-value=16 Score=36.37 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=38.5
Q ss_pred CceEEEEEECCCCCeeEEEecCcchHHHHHHHhhhccccccccccccc
Q 000230 26 PTVTEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLS 73 (1822)
Q Consensus 26 ~~~~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~ 73 (1822)
|..+.|.|.+|+++.++-.-..+++|++|+.++..+.. .-..|.|.
T Consensus 2 ~~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~~~--~~~~f~L~ 47 (85)
T cd01774 2 PDTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSLKE--TPEKFQIV 47 (85)
T ss_pred CceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhCCC--CCCcEEEe
Confidence 56789999999999999999999999999999987654 22566664
No 405
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=70.25 E-value=37 Score=44.09 Aligned_cols=71 Identities=20% Similarity=0.109 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000230 907 AGAYSLLAVVLYH--TGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLH 980 (1822)
Q Consensus 907 a~al~nLA~ly~~--lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~ 980 (1822)
..++.+||.+--. ..+-..++++|++|+...++.++..|. .-|..+|.+|++.++|.+|+.++-.|-+..+
T Consensus 277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~ 349 (618)
T PF05053_consen 277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIR 349 (618)
T ss_dssp HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT
T ss_pred chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666433 234567899999999999999887663 4678899999999999999999988866543
No 406
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=70.08 E-value=23 Score=49.40 Aligned_cols=82 Identities=16% Similarity=0.145 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCC
Q 000230 949 MKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGAD 1028 (1822)
Q Consensus 949 a~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~d 1028 (1822)
-.+...+|..+..+-.-..--+.|.+||.-+..+.|. +....-|..-|.+|+.+|+|++-+++|.-|++.+ ++
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 584 (932)
T PRK13184 512 YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRY-----SQ 584 (932)
T ss_pred hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhc-----CC
Confidence 3445555555544322222225666677666666532 2222336677888999999999999998888765 56
Q ss_pred cHHHHHHHH
Q 000230 1029 HIQTAASYH 1037 (1822)
Q Consensus 1029 hp~tA~~l~ 1037 (1822)
||.+....-
T Consensus 585 ~~~~~~~~~ 593 (932)
T PRK13184 585 HPEISRLRD 593 (932)
T ss_pred CCccHHHHH
Confidence 776655443
No 407
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=69.97 E-value=25 Score=44.56 Aligned_cols=74 Identities=16% Similarity=0.064 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 000230 909 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLT 982 (1822)
Q Consensus 909 al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i 982 (1822)
++..|.+++..+|||..|+....-.---...++...-+-.+..++.+|.+|..+++|.+|++.|...|-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788999999999988765421111112222334456789999999999999999999999988765443
No 408
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=69.83 E-value=5.9 Score=38.12 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=48.2
Q ss_pred CeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCccccccc--C-CceEEEec
Q 000230 39 SQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSL--K-PCHLTVEE 99 (1822)
Q Consensus 39 ~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~l--k-~~~L~lVe 99 (1822)
..+.|.+.++++|.+|++.|..... |.-....|. ++|..|+|-..|+++ + ++.|.|+-
T Consensus 8 ~~~~l~v~~~~TV~~lK~~i~~~~g-ip~~~q~L~--~~G~~L~d~~tL~~~~i~~g~~l~v~~ 68 (76)
T cd01800 8 QMLNFTLQLSDPVSVLKVKIHEETG-MPAGKQKLQ--YEGIFIKDSNSLAYYNLANGTIIHLQL 68 (76)
T ss_pred eEEEEEECCCCcHHHHHHHHHHHHC-CCHHHEEEE--ECCEEcCCCCcHHHcCCCCCCEEEEEE
Confidence 3578889999999999999988765 788888897 599999999888874 3 68888874
No 409
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.71 E-value=35 Score=34.24 Aligned_cols=57 Identities=19% Similarity=0.117 Sum_probs=37.5
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------------HhcCCCChhHHHHHHHHHHHH
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLH---------------LTCGPSHPNTAATYINVAMME 1001 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~---------------~i~G~dhP~~a~al~nLA~iy 1001 (1822)
+|....+.+.||..+...|++++|++.+..++..-. .++|..||.+......|+.++
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~~lL 89 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLASLL 89 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHh
Confidence 577889999999999999999999998876654321 234555666555555555443
No 410
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=69.53 E-value=2.5e+02 Score=34.87 Aligned_cols=97 Identities=10% Similarity=0.148 Sum_probs=67.9
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 000230 959 YYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHA 1038 (1822)
Q Consensus 959 y~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~n 1038 (1822)
..+.++.++|++++++..+-.+..--+ -.+..+...+|.++...|+..++.+.+.+.-.......+-.. .+-..++.
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~-~Vh~~fY~ 161 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTS-NVHSSFYS 161 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCCh-hhhhhHHH
Confidence 345678999999999998877654321 246677788999999999999999999988887766655443 23344555
Q ss_pred HH-HHHHHccCHHHHHHHHHHHHH
Q 000230 1039 IA-IALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1039 LA-~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
++ ..|...|++..+ |+.|+.
T Consensus 162 lssqYyk~~~d~a~y---Yr~~L~ 182 (380)
T KOG2908|consen 162 LSSQYYKKIGDFASY---YRHALL 182 (380)
T ss_pred HHHHHHHHHHhHHHH---HHHHHH
Confidence 55 445567777654 444444
No 411
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=69.51 E-value=50 Score=41.48 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=70.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhc--CC----CChhHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Q 000230 956 AVFYYRLQHTELALKYVNRALYLLHLTC--GP----SHPNTA----ATYINVAMMEEGLGNVHVALRYLHEALKCNQRLL 1025 (1822)
Q Consensus 956 A~iy~~lG~~eeAl~~~~rAL~l~~~i~--G~----dhP~~a----~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~ 1025 (1822)
|..+++++.|..|.--|..||+++..-. +. .+-+++ .+-..|..||..+++.+.|+....+++.+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l----- 257 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL----- 257 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc-----
Confidence 3445666677777777777777665421 11 122222 34567889999999999999998888765
Q ss_pred CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 1026 GADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1026 G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
+|.+..-+...|.++..+.+|.+|..-+--|.-+|
T Consensus 258 ---nP~~frnHLrqAavfR~LeRy~eAarSamia~ymy 292 (569)
T PF15015_consen 258 ---NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMY 292 (569)
T ss_pred ---CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555667778999999999999988887666555
No 412
>PRK14707 hypothetical protein; Provisional
Probab=69.23 E-value=1.1e+02 Score=45.53 Aligned_cols=193 Identities=12% Similarity=-0.043 Sum_probs=112.8
Q ss_pred HHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000230 870 ESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAY--SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD 947 (1822)
Q Consensus 870 ~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al--~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ 947 (1822)
.+++++....+|-++-..-.-++.+...+-+ .+.....+ ..++.++-.+.+|.+.-.+-.-+..+..++.....-.
T Consensus 1004 ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~--ep~L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr 1081 (2710)
T PRK14707 1004 GMANALNALSKWLQMPVCAATVEALAARLSN--DPGLCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLR 1081 (2710)
T ss_pred HHHHHHhhhhcCCCchHHHHHHHHHHHHhcc--CHhhhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHH
Confidence 3566666677776554444445555444422 23332222 3566777777788776666665666655543221212
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCC
Q 000230 948 TMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGA 1027 (1822)
Q Consensus 948 ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~ 1027 (1822)
.+..-..++.++..+-+|-+.-.+-.-++.+...+....++........++.++..+.+|.....+-.-+..+..++...
T Consensus 1082 ~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL~~d 1161 (2710)
T PRK14707 1082 NALDSQGFGNALNALSKWPDSPVCAAAASALAKRLTDDAGLRHVFDPINVSQALNALSKWPGTQACESAIDVLAATLANA 1161 (2710)
T ss_pred HhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccccchhccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccc
Confidence 22334577888888888988888888889998888766677666666777777777777765555555555555555443
Q ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 000230 1028 DHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQ 1064 (1822)
Q Consensus 1028 dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k 1064 (1822)
.....+..-..+|..+..+.++-+.-.+.+-++.+..
T Consensus 1162 ~~Lr~a~~~Q~vAn~LNaLSKWp~~~ac~~A~~~La~ 1198 (2710)
T PRK14707 1162 PGLRNALSAQGVAIALNALSKCLARPVCRSAFVLLAE 1198 (2710)
T ss_pred hhhhhhcCHHHHHHHHHHhhcCcCcHHHHHHHHHHHH
Confidence 3333333344555555555555544444433344433
No 413
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=69.19 E-value=28 Score=34.95 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=48.3
Q ss_pred HHHhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000230 854 VYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKA 933 (1822)
Q Consensus 854 vvK~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkA 933 (1822)
+-+.+...+.+....+.+|..+...|++++|++.+.+.+..-... +-+.|...+-..
T Consensus 11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~-----------------------~~~~ar~~ll~~ 67 (90)
T PF14561_consen 11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY-----------------------EDDAARKRLLDI 67 (90)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC-----------------------CCCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc-----------------------cccHHHHHHHHH
Confidence 345556677788889999999999999999999888887753211 012222222222
Q ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHH
Q 000230 934 LDINERELGLDHPDTMKSYGDLAVFYY 960 (1822)
Q Consensus 934 L~i~er~lG~dhp~ta~ay~nLA~iy~ 960 (1822)
+. .+|..||.+......|+.+++
T Consensus 68 f~----~lg~~~plv~~~RRkL~~lL~ 90 (90)
T PF14561_consen 68 FE----LLGPGDPLVSEYRRKLASLLF 90 (90)
T ss_dssp HH----HH-TT-HHHHHHHHHHHHHH-
T ss_pred HH----HcCCCChHHHHHHHHHHHHhC
Confidence 22 357778877777777776653
No 414
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=68.91 E-value=28 Score=41.25 Aligned_cols=62 Identities=26% Similarity=0.266 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000230 926 ATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEG 1003 (1822)
Q Consensus 926 Ale~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~ 1003 (1822)
|+.||++|+.+ .|.....|+.||.++...|+.-.|+-+|-|++.. .+|- ..+..||..++..
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 78899999998 4889999999999999999999999999999843 3454 5567788887777
No 415
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=68.76 E-value=77 Score=40.00 Aligned_cols=111 Identities=16% Similarity=-0.030 Sum_probs=66.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHH--HHHcCCHHHHHHHHHHHH-----------
Q 000230 868 LLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVV--LYHTGDFNQATIYQQKAL----------- 934 (1822)
Q Consensus 868 L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~l--y~~lGd~eeAle~~qkAL----------- 934 (1822)
-...++.++..++|..|..+|.+++... ...........|..|+.+ ++..-++++|..++++.+
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~---l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~ 209 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRL---LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTS 209 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcc---cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhh
Confidence 3446678899999999999999998652 112223334555555554 566889999999998211
Q ss_pred --------HHHHHhcCC------------CChhhHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000230 935 --------DINERELGL------------DHPDTMKSYGDL--AVFYYRLQHTELALKYVNRALYLLHL 981 (1822)
Q Consensus 935 --------~i~er~lG~------------dhp~ta~ay~nL--A~iy~~lG~~eeAl~~~~rAL~l~~~ 981 (1822)
.....+.+. .++.+......+ |.--..+|+|+.|+..+.+++++..+
T Consensus 210 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~~~q 278 (380)
T TIGR02710 210 HDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALELIVQ 278 (380)
T ss_pred hhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 000000000 111111111222 22334789999999999999988654
No 416
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=68.32 E-value=2.3e+02 Score=34.72 Aligned_cols=98 Identities=19% Similarity=0.089 Sum_probs=60.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-----
Q 000230 869 LESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGL----- 943 (1822)
Q Consensus 869 ~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~----- 943 (1822)
+++-+......+..+-+....+||++ +++.+.+|..||.--. --..+|..++++||...+..+..
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~q 257 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQ 257 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 33444455556667777777788887 5777888877775422 23567888888888775543221
Q ss_pred ------------CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000230 944 ------------DHPDTMKSYGDLAVFYYRLQHTELALKYVNRAL 976 (1822)
Q Consensus 944 ------------dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL 976 (1822)
|---...+-..||.+..++|+..+|++.++...
T Consensus 258 h~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 258 HQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLM 302 (556)
T ss_pred hhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 111112233567777777787777777776543
No 417
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=67.78 E-value=9.8 Score=35.00 Aligned_cols=64 Identities=16% Similarity=0.150 Sum_probs=50.2
Q ss_pred EECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCccccccc--C-CceEEEec
Q 000230 33 VETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVSL--K-PCHLTVEE 99 (1822)
Q Consensus 33 V~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~l--k-~~~L~lVe 99 (1822)
|+..++..+.+.+.+..+|.++++.|..... +.-.+..|. ++|..|+|...|.+. + ++.|.|+.
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~-~~~~~~~l~--~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEG-VPPEQQRLI--YAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHC-cChHHEEEE--ECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 5556666788889999999999999999876 566677785 599999999888764 3 57776653
No 418
>PRK10941 hypothetical protein; Provisional
Probab=67.55 E-value=39 Score=40.71 Aligned_cols=79 Identities=15% Similarity=0.183 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Q 000230 906 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGP 985 (1822)
Q Consensus 906 ~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~ 985 (1822)
+.+.+.+|-.+|...++++.|+.+.+..+.+ .|+...-+..-|.+|.++|.+..|+.-++.-++.+ +
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l--------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P 246 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQF--------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC-----P 246 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----C
Confidence 5678899999999999999999999999987 35555667789999999999999999988887764 3
Q ss_pred CChhHHHHHHHH
Q 000230 986 SHPNTAATYINV 997 (1822)
Q Consensus 986 dhP~~a~al~nL 997 (1822)
+.|....+...+
T Consensus 247 ~dp~a~~ik~ql 258 (269)
T PRK10941 247 EDPISEMIRAQI 258 (269)
T ss_pred CchhHHHHHHHH
Confidence 455554443333
No 419
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=67.31 E-value=36 Score=43.22 Aligned_cols=75 Identities=16% Similarity=0.155 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHh
Q 000230 993 TYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKL 1067 (1822)
Q Consensus 993 al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~L 1067 (1822)
++..|.+++.-+|+|..|++.++..---...++..-..-...+++.+|-+|..+++|.+|+..|...+-...+.-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355677888999999999998864311111122222334456788999999999999999999999887654433
No 420
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=67.21 E-value=29 Score=31.52 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000230 1035 SYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWL 1081 (1822)
Q Consensus 1035 ~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L 1081 (1822)
+++.||..++.+|+|.+|..+.+.++++ .|++.+.......+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~-----eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI-----EPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-----TTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh-----CCCcHHHHHHHHHH
Confidence 6788999999999999999999999985 56665554444333
No 421
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=66.95 E-value=19 Score=35.17 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=40.8
Q ss_pred eEEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccC
Q 000230 28 VTEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLK 82 (1822)
Q Consensus 28 ~~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~ 82 (1822)
...|.|.+|++..++-.-.++++|.||++++..+. +.-..|.|...+-...+.
T Consensus 4 ~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~--~~~~~f~L~t~fPrk~~~ 56 (79)
T cd01772 4 ETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNT--GNGGPFTLMTPFPRKVFT 56 (79)
T ss_pred EEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcC--CCCCCEEEEeCCCCeECC
Confidence 46799999999999999999999999999998654 223668886333344554
No 422
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=66.50 E-value=38 Score=47.34 Aligned_cols=111 Identities=17% Similarity=0.079 Sum_probs=75.3
Q ss_pred HHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHH
Q 000230 873 KTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSY 952 (1822)
Q Consensus 873 ~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay 952 (1822)
.+++....|+.|+..|++...-+ +.-.+--.+.+.+|.++..+-.-..--+.+.+||.-++++.|. +....-|
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 555 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEY 555 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHH
Confidence 34555566777777777654432 1123334567777877766533333336788888888887543 4455678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 000230 953 GDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYI 995 (1822)
Q Consensus 953 ~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~ 995 (1822)
..-|.+|.++|+|++-+++|.-|++.+ +.||.+....-
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 593 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRY-----SQHPEISRLRD 593 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhc-----CCCCccHHHHH
Confidence 888999999999999999999998765 46887765443
No 423
>PRK09169 hypothetical protein; Validated
Probab=66.14 E-value=4.1e+02 Score=40.62 Aligned_cols=13 Identities=38% Similarity=0.284 Sum_probs=10.3
Q ss_pred hhHHHHHHHHhhh
Q 000230 787 DLAASIAACLNIL 799 (1822)
Q Consensus 787 ~ls~~IA~~LN~L 799 (1822)
..+..|++.||-|
T Consensus 496 f~~Q~lAN~LnAL 508 (2316)
T PRK09169 496 LDAQGLANALNAL 508 (2316)
T ss_pred cChHHHHHHHHHH
Confidence 4467899999988
No 424
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=66.09 E-value=11 Score=47.09 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=17.5
Q ss_pred ccccCCCCCCCCCccCCCCCCCCCC
Q 000230 1663 AEFVPSQPWIPNGYPVSPNGMPVSP 1687 (1822)
Q Consensus 1663 ~~~vp~~~~~~~g~~~~~~~~~~~~ 1687 (1822)
.-+.|||| -|--|--||||||++-
T Consensus 548 ~~Y~P~~P-Q~~~~~PSP~~~P~~G 571 (654)
T COG5180 548 GMYMPFQP-QPMFYHPSPQMMPVMG 571 (654)
T ss_pred ccccCCCC-CcccccCCCCCCcccC
Confidence 34667887 6666888899888763
No 425
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.99 E-value=3.2e+02 Score=33.94 Aligned_cols=28 Identities=7% Similarity=-0.103 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000230 953 GDLAVFYYRLQHTELALKYVNRALYLLH 980 (1822)
Q Consensus 953 ~nLA~iy~~lG~~eeAl~~~~rAL~l~~ 980 (1822)
.+-|++++..++|.+....+..|-..++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~K 89 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFK 89 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHh
Confidence 4458888888888888777765544443
No 426
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.89 E-value=1.2e+02 Score=39.93 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=68.0
Q ss_pred CHHHHHHHHHHHHHHHHH----hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC-----------
Q 000230 922 DFNQATIYQQKALDINER----ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPS----------- 986 (1822)
Q Consensus 922 d~eeAle~~qkAL~i~er----~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~d----------- 986 (1822)
-|++|...|.-|+++..- ++-.++|..+..+..+|.++..+|+.+.|-.+.+++|..+...+-+.
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 355666666666665421 11236899999999999999999999999999999999988765321
Q ss_pred --Chh---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 987 --HPN---TAATYINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 987 --hP~---~a~al~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
+|. ...+++..-..+.+.|-+..|.++.+-.+.+
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL 371 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL 371 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 222 1223333344556777777777777665553
No 427
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=65.85 E-value=16 Score=44.96 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Q 000230 991 AATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHE 1056 (1822)
Q Consensus 991 a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~l 1056 (1822)
+.-+...|.....+++++.|...|.+|..++..+||..|..+...++..|..++..+++..++-..
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 445667889999999999999999999999999999999999999999999999888877665433
No 428
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=65.74 E-value=1.3e+02 Score=39.38 Aligned_cols=72 Identities=14% Similarity=0.067 Sum_probs=55.8
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhC----CCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 000230 994 YINVAMMEEGLGNVHVALRYLHEALKCNQRLLG----ADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQA 1065 (1822)
Q Consensus 994 l~nLA~iy~~lGd~eeAl~~leeALei~~~~~G----~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~ 1065 (1822)
.++++.-+...|.-.++++|+.-+....+...- ..-+..+..|..+..+|...|.+.+|..+.++++.-...
T Consensus 154 IY~ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ki~e 229 (542)
T PF14858_consen 154 IYTICRHLMTAGHSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALAKIDE 229 (542)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 467788888999999999999877655543221 123456788889999999999999999999999875543
No 429
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=65.67 E-value=11 Score=36.31 Aligned_cols=67 Identities=18% Similarity=0.282 Sum_probs=51.9
Q ss_pred EEEEECCCCCeeEEEecCcchHHHHHHHhhhccccccccccccccc-ccCcccCCcccccccC---CceEEEe
Q 000230 30 EITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHE-VRGSKLKDSVDVVSLK---PCHLTVE 98 (1822)
Q Consensus 30 ~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e-~~G~~L~d~~el~~lk---~~~L~lV 98 (1822)
.|+|+.=+ ..+.+.+.++++|.|+++.|.+... +.-..--|-|- +.|..|+|...|++++ |..|.|+
T Consensus 2 ~i~vk~~g-~~~~v~v~~~~Tv~~lK~~i~~~tg-vp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 2 PVIVKWGG-QEYSVTTLSEDTVLDLKQFIKTLTG-VLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred EEEEEECC-EEEEEEECCCCCHHHHHHHHHHHHC-CCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 57777743 3467889999999999999999876 77777777531 3798999999999863 5777775
No 430
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=65.66 E-value=1.4e+02 Score=37.63 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 1031 QTAASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1031 ~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
..+.+++..|..+...+++-+|+.+++.|...+
T Consensus 246 f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~ 278 (353)
T cd09243 246 YLAYAYCYHGETLLAKDKCGEAIRSLQESEKLY 278 (353)
T ss_pred HHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHH
Confidence 345666666666666677777777777776644
No 431
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=65.51 E-value=3.1e+02 Score=36.42 Aligned_cols=176 Identities=15% Similarity=-0.026 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 863 ADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELG 942 (1822)
Q Consensus 863 ~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG 942 (1822)
.+...+..........|+++...-+|++++-- -...-..+...+......|+..-|-..++++.++.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~--------cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~----- 361 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIP--------CALYDEFWIKYARWMESSGDVSLANNVLARACKIH----- 361 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH--------HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-----
Q ss_pred CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000230 943 LDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQ 1022 (1822)
Q Consensus 943 ~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~ 1022 (1822)
++.+..+...-|.+.-..|++..|...|++...-+ |....+-..-+.+...+|+.+.+-. ...+....
T Consensus 362 --~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~~~~~--~~~l~s~~ 429 (577)
T KOG1258|consen 362 --VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLEDANY--KNELYSSI 429 (577)
T ss_pred --CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchhhhhH--HHHHHHHh
Q ss_pred HhhCCCcHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHH
Q 000230 1023 RLLGADHIQTAASYHAIAIALS-LMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1023 ~~~G~dhp~tA~~l~nLA~~y~-~lGd~eeAi~~lekAL~I~ 1063 (1822)
.-.-.+.-.+...+.+.++... ..++.+.|...+.+++++.
T Consensus 430 ~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 430 YEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL 471 (577)
T ss_pred cccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC
No 432
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=65.46 E-value=12 Score=44.87 Aligned_cols=65 Identities=22% Similarity=0.157 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDI 936 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i 936 (1822)
.|...+..|.-....|+.++|..+|+.||.+ .|....++..+|.......+.-+|-.+|-+||.+
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 3455566777788999999999999999998 4555567888898888889999999999999987
No 433
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=65.45 E-value=54 Score=36.44 Aligned_cols=89 Identities=13% Similarity=0.002 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000230 904 RMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTC 983 (1822)
Q Consensus 904 p~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~ 983 (1822)
..+...+..+..+-...++.+++..++.-...+ .|.....-..-|.++...|+|.+|+.+++.+..
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------ 72 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE------ 72 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc------
Confidence 356677888888888889999988877554333 477778888899999999999999999998643
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHH
Q 000230 984 GPSHPNTAATYINVAMMEEGLGNVH 1008 (1822)
Q Consensus 984 G~dhP~~a~al~nLA~iy~~lGd~e 1008 (1822)
..+....+--.++.|+..+|+.+
T Consensus 73 --~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 --RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred --cCCCChHHHHHHHHHHHHcCChH
Confidence 23444445556788888888854
No 434
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=64.17 E-value=1.3e+02 Score=37.73 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 000230 1031 QTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQA 1065 (1822)
Q Consensus 1031 ~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~ 1065 (1822)
..+.+++..|......+++-+|+.+++.|+..+++
T Consensus 235 f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~ 269 (355)
T cd09241 235 FKAAAHYRMALVALEKSKYGEEVARLRVALAACKE 269 (355)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 45677788888888888999999999999886644
No 435
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=64.15 E-value=19 Score=46.04 Aligned_cols=92 Identities=20% Similarity=0.045 Sum_probs=69.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 868 LLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHT---GDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 868 L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~l---Gd~eeAle~~qkAL~i~er~lG~d 944 (1822)
++.-|.-.+..+.+..|+..|.+++.. .++...+|.+.|.++++. |+.-.|+.-+..|+.+
T Consensus 377 ~~~egnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl-------- 440 (758)
T KOG1310|consen 377 FKTEGNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL-------- 440 (758)
T ss_pred HHhhccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------
Confidence 344444445555677888888888765 456667888888888764 5667777777777776
Q ss_pred ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000230 945 HPDTMKSYGDLAVFYYRLQHTELALKYVNRA 975 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~eeAl~~~~rA 975 (1822)
++....+++.|+.++..++++.+|+.+...+
T Consensus 441 n~s~~kah~~la~aL~el~r~~eal~~~~al 471 (758)
T KOG1310|consen 441 NPSIQKAHFRLARALNELTRYLEALSCHWAL 471 (758)
T ss_pred ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHH
Confidence 5778899999999999999999999986543
No 436
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=63.28 E-value=75 Score=41.46 Aligned_cols=71 Identities=18% Similarity=0.061 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000230 949 MKSYGDLAVFYYR--LQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQ 1022 (1822)
Q Consensus 949 a~ay~nLA~iy~~--lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~ 1022 (1822)
..++.+||.+.-- ...-..++.+|.+|+...+..|+..|-. -|..+|-.|++.++|.+|+.++-+|-+..+
T Consensus 277 PmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvY---PYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~ 349 (618)
T PF05053_consen 277 PMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVY---PYTYLGGYYYRHKRYREALRSWAEAADVIR 349 (618)
T ss_dssp HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SH---HHHHHHHHHHHTT-HHHHHHHHHHHHHHHT
T ss_pred chhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccc---cceehhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555432 2334678999999999999999765543 356688889999999999999988866653
No 437
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=62.90 E-value=1.2e+02 Score=38.09 Aligned_cols=17 Identities=18% Similarity=-0.048 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000230 923 FNQATIYQQKALDINER 939 (1822)
Q Consensus 923 ~eeAle~~qkAL~i~er 939 (1822)
..+|..+|++|--+++-
T Consensus 131 lK~A~~~Fq~AAG~F~~ 147 (350)
T cd09244 131 IEAAVDAFQRAAGAFNY 147 (350)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888887766543
No 438
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=62.80 E-value=3.9e+02 Score=33.43 Aligned_cols=38 Identities=24% Similarity=0.143 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhC
Q 000230 1031 QTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLG 1068 (1822)
Q Consensus 1031 ~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG 1068 (1822)
..+.+++.+|......+++-+|+.+++.|...++...-
T Consensus 251 ~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~~ 288 (346)
T cd09247 251 HEARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKLP 288 (346)
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 45677788888888999999999999999997665443
No 439
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=61.97 E-value=8.4 Score=29.31 Aligned_cols=25 Identities=28% Similarity=0.240 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 000230 908 GAYSLLAVVLYHTGDFNQATIYQQK 932 (1822)
Q Consensus 908 ~al~nLA~ly~~lGd~eeAle~~qk 932 (1822)
.++..||.++..+|++++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678999999999999999988763
No 440
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.37 E-value=1.7e+02 Score=38.04 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhC
Q 000230 1035 SYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLG 1068 (1822)
Q Consensus 1035 ~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG 1068 (1822)
-.+.+|..|...++|.+|+.+|.+|+...++..+
T Consensus 424 RC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~ 457 (593)
T KOG2460|consen 424 RCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNS 457 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999886655444
No 441
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.13 E-value=2.4e+02 Score=39.88 Aligned_cols=181 Identities=15% Similarity=0.084 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHH------HHcCC----HHHHHHHHHHH
Q 000230 864 DGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVL------YHTGD----FNQATIYQQKA 933 (1822)
Q Consensus 864 ~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly------~~lGd----~eeAle~~qkA 933 (1822)
..-.-+.+|.+|...|...+|++.|.+|+.-. |... ++..+-.-. ...|+ -..|+.||.++
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~----ge~~-----aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv 989 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGF----GEGN-----ALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKV 989 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhcc----ccHH-----HHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHH
Confidence 34445668899999999999999999998742 1111 111111100 01121 11244455555
Q ss_pred HHHHHH----------------hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 000230 934 LDINER----------------ELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINV 997 (1822)
Q Consensus 934 L~i~er----------------~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nL 997 (1822)
++++++ .++++.|..+..+.++=..+..+|.+.+|...+-+- ++......++..|
T Consensus 990 ~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~n---------pdserrrdcLRql 1060 (1480)
T KOG4521|consen 990 VRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRN---------PDSERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcC---------CcHHHHHHHHHHH
Confidence 544443 246788888888888888888888888886654321 2223334567777
Q ss_pred HHHHHHCCCHHHHHH-----HHHHHHH-HHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHH-HHHHHHH
Q 000230 998 AMMEEGLGNVHVALR-----YLHEALK-CNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQH-EQTTLQI 1062 (1822)
Q Consensus 998 A~iy~~lGd~eeAl~-----~leeALe-i~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~-lekAL~I 1062 (1822)
-.++.+.|+++.=.+ +-++.-. +............-..|..|=..+...++|++|-.+ |+.|..+
T Consensus 1061 vivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1061 VIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred HHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 777777777643211 1122222 111111112222223344444455678888886554 5555443
No 442
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.56 E-value=5.2e+02 Score=34.08 Aligned_cols=133 Identities=11% Similarity=-0.025 Sum_probs=79.4
Q ss_pred HHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH
Q 000230 876 LDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDL 955 (1822)
Q Consensus 876 ~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nL 955 (1822)
...|.-+++...+-++-... ..+|..--....+|+.+-..+...+.++. ....+++...+.. +|.-+..+.+-
T Consensus 201 gf~g~r~egl~~Lw~~a~~~-s~~~~i~~l~L~~y~~~~~~~~~~p~~d~--~~~~~~Ll~~~~~----~p~ga~wll~~ 273 (546)
T KOG3783|consen 201 GFSGDRDEGLRLLWEAAKQR-NFRGAIALLALLCYYQFISFVLGTPNPDG--EECEKALKKYRKR----YPKGALWLLME 273 (546)
T ss_pred hhcccHHHHHHHHHHHHccC-cchHHHHHHHHHHHHHHHHHHcCCCCccH--HHHHHHhHHHHHh----CCCCccHHHHH
Confidence 34455555555544443321 22111111122334444444555555555 4444444444433 56667777888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 956 AVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 956 A~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
|..+...|+.+.|+.++..++....+. -...+++.+|.++..+.+|..|-.++....+..
T Consensus 274 ar~l~~~g~~eaa~~~~~~~v~~~~kQ------~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des 333 (546)
T KOG3783|consen 274 ARILSIKGNSEAAIDMESLSIPIRMKQ------VKSLMVFERAWLSVGQHQYSRAADSFDLLRDES 333 (546)
T ss_pred HHHHHHcccHHHHHHHHHhcccHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Confidence 899999999888999988887732221 124567888888888999999988888776653
No 443
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=60.34 E-value=63 Score=35.02 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhC
Q 000230 990 TAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADH-IQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLG 1068 (1822)
Q Consensus 990 ~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dh-p~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG 1068 (1822)
...+.+++|.++....+.+ ..++.+.+.+.++...| ...-.+++.||..++.+++|+.|+.|....++. .
T Consensus 31 s~~s~f~lAwaLV~S~~~~----dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~-----e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTE----DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET-----E 101 (149)
T ss_pred hHHHHHHHHHHHHcccchH----HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh-----C
Confidence 4567889999988766533 23344444444443222 234567889999999999999999999888874 3
Q ss_pred CCCHHHHHHH
Q 000230 1069 SEDLRTQDAA 1078 (1822)
Q Consensus 1069 ~dhp~t~~a~ 1078 (1822)
++.++.....
T Consensus 102 ~~n~Qa~~Lk 111 (149)
T KOG3364|consen 102 PNNRQALELK 111 (149)
T ss_pred CCcHHHHHHH
Confidence 4555444433
No 444
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=59.75 E-value=33 Score=37.06 Aligned_cols=69 Identities=29% Similarity=0.254 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 906 TAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPD-TMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 906 ~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~-ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
...+.+++|+++....+.+ ..++-+.+++.++...||. .-..++.||.-++++++|++|++|+...|+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~----dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTE----DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchH----HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4567889999998876654 3566777777776544544 4567788999999999999999999888775
No 445
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.36 E-value=84 Score=30.72 Aligned_cols=60 Identities=15% Similarity=0.093 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH--HhCCCCHHHHHH-HHHHHHHHHHHHHHH
Q 000230 1033 AASYHAIAIALSLMEAYSLSVQHEQTTLQILQA--KLGSEDLRTQDA-AAWLEYFESKALEQQ 1092 (1822)
Q Consensus 1033 A~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~--~LG~dhp~t~~a-~~~L~~l~qqAl~~q 1092 (1822)
|..+...|.-+-..|+|++|+.+|+.|++.+.. .++..++..+.. ...+..+..+|-.+.
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~Lk 68 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQALH 68 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566677899999999999999999987 455334433332 344444443443333
No 446
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=59.27 E-value=3.8e+02 Score=32.07 Aligned_cols=160 Identities=11% Similarity=0.012 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000230 911 SLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY-RLQHTELALKYVNRALYLLHLTCGPSHPN 989 (1822)
Q Consensus 911 ~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~-~lG~~eeAl~~~~rAL~l~~~i~G~dhP~ 989 (1822)
..+|.+.-+.++|++.+.+.++++.+.. . ...+..-.+.|..+|- ..|....+.+.+.. ++......|. ..
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~----~-~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~--~~ 76 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVD----S-EELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGN--ED 76 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcC----C-ccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCc--hH
Confidence 4578888889999999999999877521 0 1234455666777764 34667777766654 3332222221 11
Q ss_pred HHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhhCCC--c-HHHHHHHHHHHHHHHH-----ccC-----HHHHHHH
Q 000230 990 TAATYINVAMMEEGLGN-VHVALRYLHEALKCNQRLLGAD--H-IQTAASYHAIAIALSL-----MEA-----YSLSVQH 1055 (1822)
Q Consensus 990 ~a~al~nLA~iy~~lGd-~eeAl~~leeALei~~~~~G~d--h-p~tA~~l~nLA~~y~~-----lGd-----~eeAi~~ 1055 (1822)
.. .+..-|. ++ -++=..+....+.+....+-+. + ......+-..|..|+- .|+ .+.|.+.
T Consensus 77 ~~----~~~~~yr--~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~a 150 (244)
T smart00101 77 HV----ASIKEYR--GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVA 150 (244)
T ss_pred HH----HHHHHHH--HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 11 1111111 11 1233445666666665544322 1 1222333334444432 222 4478888
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 000230 1056 EQTTLQILQAKLGSEDLRTQDAAAWLEYF 1084 (1822)
Q Consensus 1056 lekAL~I~k~~LG~dhp~t~~a~~~L~~l 1084 (1822)
|++|+++.+..+.+.||-.....-+...+
T Consensus 151 Y~~A~e~a~~~L~pt~PirLgLaLN~SVF 179 (244)
T smart00101 151 YKSAQDIALAELPPTHPIRLGLALNFSVF 179 (244)
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHH
Confidence 88888888888888888766655555444
No 447
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.15 E-value=94 Score=43.35 Aligned_cols=46 Identities=26% Similarity=0.455 Sum_probs=29.6
Q ss_pred ccCCCCCCCCCC--CCccccccCCcccCCCCCCCCccCCCccccCCCCCCCC
Q 000230 1560 SAAAPPFNPSTV--PVFGSIVVPAFKDHGGILPPPVNIPPMLKVNPVRRSPH 1609 (1822)
Q Consensus 1560 ~a~~~~~~~s~~--p~~~~~~~p~f~~~~~~~~~p~~~~~~~~~~~~~~~~~ 1609 (1822)
+|-..|++||.. ++|.+.++.+-+-+--+.|.| |..|.+|.++..|
T Consensus 778 ~~~g~p~~p~p~p~~~~~p~~~s~~~p~~~stP~~----~~~~~~P~~~~~~ 825 (1049)
T KOG0307|consen 778 SANGFPYNPSPAPQPSYTPAPQSNARPNSASTPTP----PAFSFTPPPSSGA 825 (1049)
T ss_pred cccCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCC----CCcCCCCCCcccc
Confidence 455558888866 677777777765444444444 4777777775555
No 448
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.11 E-value=1.6e+02 Score=38.75 Aligned_cols=48 Identities=19% Similarity=0.036 Sum_probs=29.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 918 YHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 918 ~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
.++|+++.|.++..++-.. .=|..||.+....+++..|.+++.+|..+
T Consensus 648 l~lgrl~iA~~la~e~~s~-------------~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEANSE-------------VKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhcCcHHHHHHHHHhhcch-------------HHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 4556666666655544222 23566777777777777777777776554
No 449
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=58.18 E-value=2.2e+02 Score=37.65 Aligned_cols=112 Identities=18% Similarity=0.049 Sum_probs=77.5
Q ss_pred cCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Q 000230 899 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNR-ALY 977 (1822)
Q Consensus 899 ~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~r-AL~ 977 (1822)
+++.++.++.++. ++..+...++...|......++.. .+..+.++.+||..+...|....++..+.+ +..
T Consensus 60 ~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~ 130 (620)
T COG3914 60 INDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEW 130 (620)
T ss_pred cCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4567888877766 888888899988888777777765 577888999999998887777766655444 333
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 978 LLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 978 l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
.... ...---.....|. ++..+..+|+..++..+++++.++.
T Consensus 131 ~~~~-~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~l~~~~d~~ 172 (620)
T COG3914 131 LSPD-NAEFLGHLIRFYQ-LGRYLKLLGRTAEAELALERAVDLL 172 (620)
T ss_pred cCcc-hHHHHhhHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhh
Confidence 2110 0000011122333 7888889999999999988888875
No 450
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=58.14 E-value=3.4e+02 Score=36.72 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=15.9
Q ss_pred HHHHHHHcCChHHHHHHHHh
Q 000230 871 SSKTSLDKGKLEDAVNYGSK 890 (1822)
Q Consensus 871 lG~~~~~~G~yeeAie~~~e 890 (1822)
...+++..|+|+.|++++.+
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHh
Confidence 34578889999999999888
No 451
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=58.06 E-value=97 Score=37.53 Aligned_cols=74 Identities=20% Similarity=0.162 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000230 908 GAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSH 987 (1822)
Q Consensus 908 ~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dh 987 (1822)
..+...+..|...|.+.+|+++.++++.+ ||..-..+..|-.+|..+|+--.|.+.|++--..++.-+|-+-
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~v 351 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDV 351 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCc
Confidence 34566788899999999999999999987 6777778888889999999999999999998888877777654
Q ss_pred hh
Q 000230 988 PN 989 (1822)
Q Consensus 988 P~ 989 (1822)
.+
T Consensus 352 dd 353 (361)
T COG3947 352 DD 353 (361)
T ss_pred ch
Confidence 33
No 452
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=57.97 E-value=11 Score=28.76 Aligned_cols=24 Identities=17% Similarity=-0.065 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHH
Q 000230 1034 ASYHAIAIALSLMEAYSLSVQHEQ 1057 (1822)
Q Consensus 1034 ~~l~nLA~~y~~lGd~eeAi~~le 1057 (1822)
.++++||.++..+|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 357889999999999999999876
No 453
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=57.90 E-value=2.1e+02 Score=34.87 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Q 000230 905 MTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCG 984 (1822)
Q Consensus 905 ~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G 984 (1822)
....++..++..+...|+++.++..+++.+.+ ||..-..|..|-..|...|+...|+..|++.-.....-.|
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlg 222 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELG 222 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcC
Confidence 45678899999999999999999999888776 7888888999999999999999999999999887666666
Q ss_pred CCChhH
Q 000230 985 PSHPNT 990 (1822)
Q Consensus 985 ~dhP~~ 990 (1822)
.+....
T Consensus 223 i~P~~~ 228 (280)
T COG3629 223 IDPAPE 228 (280)
T ss_pred CCccHH
Confidence 654433
No 454
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=57.77 E-value=2.1e+02 Score=35.92 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Q 000230 1031 QTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQA 1065 (1822)
Q Consensus 1031 ~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~ 1065 (1822)
..+.+++..|..+...+++-+|+.+++.|...++.
T Consensus 242 f~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~ 276 (348)
T cd09242 242 YKSLAAYYHALALEAAGKYGEAIAYLTQAESILKE 276 (348)
T ss_pred HHHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHH
Confidence 34566666777777777888888888888776543
No 455
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.01 E-value=21 Score=47.22 Aligned_cols=45 Identities=22% Similarity=0.309 Sum_probs=27.1
Q ss_pred CCCCCCCCCCccccccCCcccCCCCCCCCccCCCccccCCCCCCCCCC
Q 000230 1564 PPFNPSTVPVFGSIVVPAFKDHGGILPPPVNIPPMLKVNPVRRSPHQS 1611 (1822)
Q Consensus 1564 ~~~~~s~~p~~~~~~~p~f~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 1611 (1822)
||.=.+..|.|.|.+-|||+ ||++-+++ -.||..|+ +|..+|-.+
T Consensus 92 PPsll~~~~~~~p~~~p~fg-~Gsls~~q-pL~~a~p~-~m~~s~v~~ 136 (1118)
T KOG1029|consen 92 PPSLLKQPPRNAPSTWPGFG-MGSLSYSQ-PLPPAAPR-RMSSSPVVG 136 (1118)
T ss_pred ChHHhccCCcCCCCCCCccC-CCCcCcCC-CCCccccc-ccCCCccCC
Confidence 44444455899999999996 77655443 34555555 344444333
No 456
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.84 E-value=1.7e+02 Score=36.25 Aligned_cols=31 Identities=10% Similarity=-0.092 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Q 000230 1034 ASYHAIAIALSLMEAYSLSVQHEQTTLQILQ 1064 (1822)
Q Consensus 1034 ~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k 1064 (1822)
.+-+.-|..+...|++.++..++.+++-|++
T Consensus 214 Yv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~q 244 (449)
T COG3014 214 YVSYLSGLFYALNGDVNKGLGYLNEAYGISQ 244 (449)
T ss_pred HHHHHHHHhcccCccHhHHHHHHHHHhccCc
Confidence 3344556677777888888888888887654
No 457
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.55 E-value=1.2e+02 Score=41.45 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhh
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKL 895 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~ 895 (1822)
+..+...|..++.+|++++|..+|-+++...
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 3345667889999999999999999998764
No 458
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=56.21 E-value=3.1e+02 Score=34.74 Aligned_cols=145 Identities=15% Similarity=0.134 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCChhH--
Q 000230 922 DFNQATIYQQKALDINEREL-----GLDHPDTMKSYGDLAVFYYRL----QHTELALKYVNRALYLLHLTCGPSHPNT-- 990 (1822)
Q Consensus 922 d~eeAle~~qkAL~i~er~l-----G~dhp~ta~ay~nLA~iy~~l----G~~eeAl~~~~rAL~l~~~i~G~dhP~~-- 990 (1822)
+|++|...|..++..+.+.. ...-.+.+.+...++.+|..+ .+.+.-..++++=+++++.+...-+|..
T Consensus 139 ~f~dAr~vF~~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~ 218 (371)
T PF12309_consen 139 DFDDAREVFLNGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYYL 218 (371)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 44555555544444433321 111122344444555444332 6778888888888888877665434432
Q ss_pred ---HHHHHHHHHHHHH-------CCC--------------------HHHHHHHHHHHHHHHHHhh-CC--------CcHH
Q 000230 991 ---AATYINVAMMEEG-------LGN--------------------VHVALRYLHEALKCNQRLL-GA--------DHIQ 1031 (1822)
Q Consensus 991 ---a~al~nLA~iy~~-------lGd--------------------~eeAl~~leeALei~~~~~-G~--------dhp~ 1031 (1822)
-..++.||.+|.. ..+ ...|+.+|+.-++.+..-- +. .-..
T Consensus 219 ~~~rql~fElae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~ 298 (371)
T PF12309_consen 219 NLCRQLWFELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRP 298 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHH
Confidence 2344455555432 222 1345555555555543211 00 1123
Q ss_pred HHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHHHHHH
Q 000230 1032 TAASYHAIAIALSLM--EAYSLSVQHEQTTLQILQAK 1066 (1822)
Q Consensus 1032 tA~~l~nLA~~y~~l--Gd~eeAi~~lekAL~I~k~~ 1066 (1822)
...+++.+|++|... ++..+=++++++++..|+.+
T Consensus 299 ~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y~~v 335 (371)
T PF12309_consen 299 YLYAYFHIARLYSKLITSDPKEQLENLEKSLEYYKWV 335 (371)
T ss_pred HHHHHHHHHHHHccccCCChHHHHHHHHHHHHHHHHH
Confidence 567889999999866 56666666666666666543
No 459
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=56.15 E-value=1.7e+02 Score=36.24 Aligned_cols=17 Identities=24% Similarity=0.188 Sum_probs=11.5
Q ss_pred ChHHHHHHHHhhhhhhh
Q 000230 880 KLEDAVNYGSKALSKLM 896 (1822)
Q Consensus 880 ~yeeAie~~~eAL~l~~ 896 (1822)
.+..|..+|++|..+++
T Consensus 136 ~~k~A~~~fq~AAG~F~ 152 (345)
T cd09034 136 DLKQAIKSLQKAAGYFE 152 (345)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46677777777766554
No 460
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=54.09 E-value=2.1e+02 Score=36.01 Aligned_cols=37 Identities=14% Similarity=0.069 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHh
Q 000230 1031 QTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKL 1067 (1822)
Q Consensus 1031 ~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~L 1067 (1822)
..+.+++.+|..+...+++.+|+.+++.|...++...
T Consensus 237 ~~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~ 273 (377)
T PF03097_consen 237 YRALAHYHQALAAEEAKKYGEAIARLRRAEEALKEAS 273 (377)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 4567788888889999999999999999999887755
No 461
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=53.64 E-value=94 Score=40.21 Aligned_cols=102 Identities=22% Similarity=0.188 Sum_probs=63.8
Q ss_pred HHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHH
Q 000230 874 TSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYG 953 (1822)
Q Consensus 874 ~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~ 953 (1822)
..++.|+++.|.+...+.- ....|..||.....+|+++-|..+|+++-. +.
T Consensus 327 LAl~lg~L~~A~~~a~~~~-------------~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------------~~ 377 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKELD-------------DPEKWKQLGDEALRQGNIELAEECYQKAKD----------------FS 377 (443)
T ss_dssp HHHHCT-HHHHHHHCCCCS-------------THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------------HH
T ss_pred HHHhcCCHHHHHHHHHhcC-------------cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------------cc
Confidence 4567899999887754432 234899999999999999999999998644 35
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 000230 954 DLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEA 1017 (1822)
Q Consensus 954 nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeA 1017 (1822)
.|..+|...|+.+.=.++...|.. . | . ++-.-.++..+|+.++.++.+.++
T Consensus 378 ~L~lLy~~~g~~~~L~kl~~~a~~----~-~--~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 378 GLLLLYSSTGDREKLSKLAKIAEE----R-G--D------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHH----T-T---------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccHHHHHHhCCHHHHHHHHHHHHH----c-c--C------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 567778888886544444433322 1 1 1 111123455567777777766654
No 462
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=52.60 E-value=14 Score=35.80 Aligned_cols=50 Identities=14% Similarity=0.170 Sum_probs=41.8
Q ss_pred CcchHHHHHHHhhhcc--cccccccccccccccCcccCCccccccc--C-CceEEEe
Q 000230 47 STDRILDVRKLLGVHV--ETCHLTSFTLSHEVRGSKLKDSVDVVSL--K-PCHLTVE 98 (1822)
Q Consensus 47 ~~d~V~dvrq~L~~~~--~Tc~~T~fsL~~e~~G~~L~d~~el~~l--k-~~~L~lV 98 (1822)
++++|.+|++.|.+.. ..|.--.+-|- +.|..|+|-..|++. + |++|.||
T Consensus 19 ~~~TV~~LK~kI~~~~~egi~~~dqQrLI--y~GKiL~D~~TL~dygI~~gstlhLv 73 (75)
T cd01815 19 GGYQVSTLKQLIAAQLPDSLPDPELIDLI--HCGRKLKDDQTLDFYGIQSGSTIHIL 73 (75)
T ss_pred ccCcHHHHHHHHHHhhccCCCChHHeEEE--eCCcCCCCCCcHHHcCCCCCCEEEEE
Confidence 5789999999999984 45656777887 499999999999984 4 6999987
No 463
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.54 E-value=5.6e+02 Score=31.74 Aligned_cols=105 Identities=14% Similarity=0.021 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 000230 947 DTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGP---SHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQR 1023 (1822)
Q Consensus 947 ~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~---dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~ 1023 (1822)
+.+.+...||.+|-..++|..|-..+.- +.+ ..|. +....+..+..+|.+|...++..+|..|..++--+...
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~---~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~ 176 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVG-IPL---DTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAE 176 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCc---ccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhc
Confidence 5677888999999999999988765432 111 1121 12234677889999999999999999999887443322
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Q 000230 1024 LLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQ 1057 (1822)
Q Consensus 1024 ~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~le 1057 (1822)
. .+.......-...|+++-..++|-+|.+.|-
T Consensus 177 ~--~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYy 208 (399)
T KOG1497|consen 177 S--SNEQLQIEYKVCYARVLDYKRKFLEAAQRYY 208 (399)
T ss_pred c--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111112222234777777888877666554
No 464
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.30 E-value=6e+02 Score=32.02 Aligned_cols=108 Identities=14% Similarity=0.064 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 909 AYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHP 988 (1822)
Q Consensus 909 al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP 988 (1822)
.++.|+......++...-+....+|+.-.....+ ....+...|-.++...++|.-++.++.--+.-.....+..||
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~~~~----qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~ 179 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDKMQPSNG----QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDP 179 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHHhccCcc----chhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCH
Confidence 4455666666666666666666666665432211 333344555566667777777776665433222222333466
Q ss_pred hHHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 989 NTAA-TYINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 989 ~~a~-al~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
.... .+++-|++|..+++|+.|+.||+.++.+
T Consensus 180 k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 180 KYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred HHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 5544 4456678899999999999999988764
No 465
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=50.69 E-value=1.3e+02 Score=29.34 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhC
Q 000230 1032 TAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLG 1068 (1822)
Q Consensus 1032 tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG 1068 (1822)
.|..+...|.-+-..|++.+|+.+|++|++.+.+.+-
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677788899999999999999999877643
No 466
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=50.44 E-value=82 Score=34.70 Aligned_cols=85 Identities=16% Similarity=0.038 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000230 865 GRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLD 944 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~d 944 (1822)
...+.++.......++.+++..++. ++.++ .|.....-..-|.++...|+|.+|+..++....-
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLd-ALrvL-------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~-------- 73 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLD-ALRVL-------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS-------- 73 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHh-------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc--------
Confidence 4456666666667888888877664 34332 5666667777899999999999999998876542
Q ss_pred ChhhHHHHHHHHHHHHHcCCH
Q 000230 945 HPDTMKSYGDLAVFYYRLQHT 965 (1822)
Q Consensus 945 hp~ta~ay~nLA~iy~~lG~~ 965 (1822)
-+......-.++.|++.+|+.
T Consensus 74 ~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 74 AGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred CCCchHHHHHHHHHHHhcCCh
Confidence 223344455677777777775
No 467
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.85 E-value=1.4e+02 Score=36.14 Aligned_cols=132 Identities=17% Similarity=0.077 Sum_probs=79.5
Q ss_pred HcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Q 000230 877 DKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLA 956 (1822)
Q Consensus 877 ~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA 956 (1822)
..|+|-+|...|+..+...-.. ..|.+....++.-+.+.+..++..-|..+.-..++.+++. +..+.....-||+
T Consensus 18 ~~~d~Yeahqm~RTl~fR~~~~--K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka---~~ad~~~~~anl~ 92 (312)
T KOG3024|consen 18 ELGDYYEAHQMYRTLVFRYTRQ--KAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKA---EVADSLLKVANLA 92 (312)
T ss_pred ccccHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHH---HhhHhHHHHHHHH
Confidence 4456666666666555443322 2344445555666667777777777776666666665541 1111222335677
Q ss_pred HHHHHcCCHHHHH-HHHHHHHHHHHHh-cC-CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 000230 957 VFYYRLQHTELAL-KYVNRALYLLHLT-CG-PSHPNTAATYINVAMMEEGLGNVHVALRYLHE 1016 (1822)
Q Consensus 957 ~iy~~lG~~eeAl-~~~~rAL~l~~~i-~G-~dhP~~a~al~nLA~iy~~lGd~eeAl~~lee 1016 (1822)
.+....+.-+..+ .+.+++++..... .| -.||.. ...||..+...+++.+|..+|-.
T Consensus 93 ~ll~e~~~~eper~~~v~raikWS~~~~~~k~G~p~l---H~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 93 ELLGEADPSEPERKTFVRRAIKWSKEFGEGKYGHPEL---HALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred HHHhhcCCCccHHHHHHHHHHHHHhhcCCCCCCCHHH---HHHHHHHHHhcccHHHHHhHhhh
Confidence 7777666655555 4556666655543 12 246654 66789999999999999999854
No 468
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=49.64 E-value=4.3e+02 Score=33.28 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHcCC---------hHHHHHHHHhhhhhhh
Q 000230 865 GRTLLESSKTSLDKGK---------LEDAVNYGSKALSKLM 896 (1822)
Q Consensus 865 A~~L~~lG~~~~~~G~---------yeeAie~~~eAL~l~~ 896 (1822)
+..++++|.+|.+.|- +.+|..+|++|.-++.
T Consensus 106 asVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~ 146 (350)
T cd09244 106 ASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFN 146 (350)
T ss_pred HHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 3445666555543322 6677888888766553
No 469
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.36 E-value=5.9e+02 Score=31.10 Aligned_cols=133 Identities=11% Similarity=0.017 Sum_probs=84.1
Q ss_pred hHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Q 000230 881 LEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYY 960 (1822)
Q Consensus 881 yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~ 960 (1822)
-++-++-+.++++-.+..-| ..+.+.++.++|..|.+.+|.+.+.++..+.+.-.-.+ .-..++..+-..||.+|.
T Consensus 91 neeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~kiRlg~~y~ 166 (412)
T COG5187 91 NEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLCKIRLGLIYG 166 (412)
T ss_pred hHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHhhc
Confidence 34555556666655444333 34678899999999999999999999998877643221 223566677788888887
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000230 961 RLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQ 1022 (1822)
Q Consensus 961 ~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~ 1022 (1822)
.+.-.++.++.....++ + |-+....-..-...|..+....+|.+|-.++-.+|..+.
T Consensus 167 d~~vV~e~lE~~~~~iE---k--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 167 DRKVVEESLEVADDIIE---K--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred cHHHHHHHHHHHHHHHH---h--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 66544554444333332 2 223222222233346667777788888888887776543
No 470
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.77 E-value=2.8e+02 Score=39.10 Aligned_cols=22 Identities=27% Similarity=0.163 Sum_probs=15.5
Q ss_pred HHHHcCCCHHHHHHHHHHHHHH
Q 000230 1118 LDYIAPDTDSKARDAQRKARAK 1139 (1822)
Q Consensus 1118 l~yi~~Gd~ekA~~~~~KAL~i 1139 (1822)
+.|+..|..++...++-++++.
T Consensus 609 lcYi~agsv~k~v~~w~~~~~~ 630 (1049)
T KOG0307|consen 609 LCYICAGSVDKLVEIWLKALDL 630 (1049)
T ss_pred HHhhhccChhhhHHHHHHhccc
Confidence 5688888888877777666543
No 471
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.77 E-value=7.3e+02 Score=31.94 Aligned_cols=127 Identities=13% Similarity=0.140 Sum_probs=67.6
Q ss_pred cccCCCCCcCcHhhHHHHhHHHHhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHH
Q 000230 834 DYDMDSESPFRKSDIISMVPVYKHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLL 913 (1822)
Q Consensus 834 ~Y~f~~a~pf~~eDI~~alpvvK~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nL 913 (1822)
.++.+....+..++++. ++-...++.+...+....|.+.+ -..+.|.++|+++-+..-+++ .+ ..-..+
T Consensus 181 ~~~E~S~~sWK~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~--~~~ERA~~L~kE~~~~k~kv~----~~--aFN~lI 249 (625)
T KOG4422|consen 181 NFGEDSTSSWKSGAVAD---LLFETLPKTDETVSIMIAGLCKF--SSLERARELYKEHRAAKGKVY----RE--AFNGLI 249 (625)
T ss_pred ccccccccccccccHHH---HHHhhcCCCchhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhheee----HH--hhhhhh
Confidence 34455555566666655 34455566665555556666655 457888888888766533332 11 111234
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000230 914 AVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTC 983 (1822)
Q Consensus 914 A~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~ 983 (1822)
|.+.+..|+ .+..+.+.. ++ .|+ +..++.+=.+...-|+++.|...+.++|--++.+.
T Consensus 250 ~~~S~~~~K-----~Lv~EMisq--km----~Pn-l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG 307 (625)
T KOG4422|consen 250 GASSYSVGK-----KLVAEMISQ--KM----TPN-LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG 307 (625)
T ss_pred hHHHhhccH-----HHHHHHHHh--hc----CCc-hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC
Confidence 444444442 111111111 11 233 23445555666677777777777777776666653
No 472
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=47.74 E-value=1.5e+02 Score=27.89 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHH
Q 000230 1033 AASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSE-DLRTQDA 1077 (1822)
Q Consensus 1033 A~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~d-hp~t~~a 1077 (1822)
|..+...|.-+-..|++++|+.+|.+|+..+...+... ++.....
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~ 50 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQA 50 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHH
Confidence 33445567777789999999999999999987765433 4444333
No 473
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=47.73 E-value=35 Score=41.10 Aligned_cols=59 Identities=17% Similarity=0.099 Sum_probs=49.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 912 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 912 nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
+.|.-.+..|+.++|..+|+.|+.+ .|....++..+|.+.....+.-+|-.||-+||.+
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 3445556789999999999999998 3555667888999998889999999999999976
No 474
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.33 E-value=5.7e+02 Score=35.57 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=44.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000230 912 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHL 981 (1822)
Q Consensus 912 nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~ 981 (1822)
.+-.+|...|+|+.|+++.+..-.. .-..+..-|.+|+..++|..|-++|-+.+.-++.
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~p~~-----------le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEE 421 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTRPDA-----------LETVLLKQADFLFQDKEYLRAAEIYAETLSSFEE 421 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCCHHH-----------HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHH
Confidence 3446788999999998887665222 2246778899999999999999998877655443
No 475
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=46.92 E-value=4.6e+02 Score=29.53 Aligned_cols=99 Identities=13% Similarity=0.136 Sum_probs=69.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 000230 916 VLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYI 995 (1822)
Q Consensus 916 ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~ 995 (1822)
.-..-|.|.+|.+++.+.++.- ...+...+|..+++|+....+-..-+.--.+..+.+--...+..|-.+.+-.
T Consensus 102 ~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWatAtI 175 (220)
T PF10858_consen 102 IKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWATATI 175 (220)
T ss_pred HHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHHHHHH
Confidence 3455688999999999988863 3577889999999999877554333333333333333334455676666666
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 996 NVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 996 nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
-.|..-...|.-.+|+++++..+.-
T Consensus 176 ~kaiwdik~nm~~~aeknL~~l~~S 200 (220)
T PF10858_consen 176 IKAIWDIKNNMKNQAEKNLKNLLAS 200 (220)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 6777778889999999999877654
No 476
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=46.40 E-value=1.7e+02 Score=28.71 Aligned_cols=59 Identities=14% Similarity=0.145 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHH-HHHHHHHHHHHHHH
Q 000230 1034 ASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKL-GSEDLRTQDAA-AWLEYFESKALEQQ 1092 (1822)
Q Consensus 1034 ~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~L-G~dhp~t~~a~-~~L~~l~qqAl~~q 1092 (1822)
.-+...|.-+-..|+|++|+.+|.+|++.|...+ ...++..+... ..+..+..+|-.+.
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk 67 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIK 67 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667788999999999999999998755 44455555443 23333333443333
No 477
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.38 E-value=1.1e+02 Score=40.37 Aligned_cols=117 Identities=21% Similarity=0.189 Sum_probs=71.7
Q ss_pred HhhhcCChhHHHHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000230 856 KHVACSSADGRTLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALD 935 (1822)
Q Consensus 856 K~l~~~s~~A~~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~ 935 (1822)
+.....+.+...-+++ .++.|+++.|.++..++-.. .=|..||.+....|++..|.+++.+|..
T Consensus 631 e~AL~~s~D~d~rFel---al~lgrl~iA~~la~e~~s~-------------~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 631 EQALELSTDPDQRFEL---ALKLGRLDIAFDLAVEANSE-------------VKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HhhhhcCCChhhhhhh---hhhcCcHHHHHHHHHhhcch-------------HHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3333444455555554 46778999998887776443 2478899999999999999999999866
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHHHHCCCHHHHHHHH
Q 000230 936 INERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVA-MMEEGLGNVHVALRYL 1014 (1822)
Q Consensus 936 i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA-~iy~~lGd~eeAl~~l 1014 (1822)
. ..|-+++...|+.+--..+- ...++. | .+|+| .+|...|+++++++++
T Consensus 695 ~----------------~~LlLl~t~~g~~~~l~~la----~~~~~~-g---------~~N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 695 L----------------GSLLLLYTSSGNAEGLAVLA----SLAKKQ-G---------KNNLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred h----------------hhhhhhhhhcCChhHHHHHH----HHHHhh-c---------ccchHHHHHHHcCCHHHHHHHH
Confidence 4 22333344455543222211 111111 1 13333 4677889988888877
Q ss_pred HHHH
Q 000230 1015 HEAL 1018 (1822)
Q Consensus 1015 eeAL 1018 (1822)
.+.-
T Consensus 745 i~t~ 748 (794)
T KOG0276|consen 745 ISTQ 748 (794)
T ss_pred HhcC
Confidence 6553
No 478
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=44.61 E-value=3.9e+02 Score=33.99 Aligned_cols=59 Identities=20% Similarity=0.083 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH--HHcCCHHHHHHHHH
Q 000230 912 LLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFY--YRLQHTELALKYVN 973 (1822)
Q Consensus 912 nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy--~~lG~~eeAl~~~~ 973 (1822)
..+..++..++|..|...+.+++.. .+..+.......|..|+..| ...-++++|.+++.
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r---~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRR---LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc---ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 3555778889999999999988754 22222233455566665555 55678899999988
No 479
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=44.47 E-value=1.3e+02 Score=33.29 Aligned_cols=87 Identities=17% Similarity=0.114 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCC
Q 000230 948 TMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGA 1027 (1822)
Q Consensus 948 ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~ 1027 (1822)
+...+..+...-...++++++..++....-+ .|.......--|.++...|+|.+|++.|++..+- .
T Consensus 9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------~ 74 (153)
T TIGR02561 9 LLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS------A 74 (153)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc------C
Confidence 4445555555556688888888776544333 4666677777899999999999999999876543 1
Q ss_pred CcHHHHHHHHHHHHHHHHccCHH
Q 000230 1028 DHIQTAASYHAIAIALSLMEAYS 1050 (1822)
Q Consensus 1028 dhp~tA~~l~nLA~~y~~lGd~e 1050 (1822)
.+ ...+.-.++.++..+||..
T Consensus 75 ~~--~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 75 GA--PPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CC--chHHHHHHHHHHHhcCChH
Confidence 12 2333445788999899864
No 480
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=44.18 E-value=6.3e+02 Score=32.56 Aligned_cols=32 Identities=9% Similarity=-0.004 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Q 000230 1032 TAASYHAIAIALSLMEAYSLSVQHEQTTLQIL 1063 (1822)
Q Consensus 1032 tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~ 1063 (1822)
.+.+++.+|......|++-+|+.+++.|...+
T Consensus 295 ~A~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L 326 (413)
T cd09245 295 RALACKFLGIDAGENGKVGEAIGWLRAAKKEL 326 (413)
T ss_pred HHHHHHHHHHhhHhcCCHHHHHHHHHHHHHHH
Confidence 35566666666667777777777777776643
No 481
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=43.71 E-value=46 Score=32.74 Aligned_cols=45 Identities=9% Similarity=0.219 Sum_probs=37.4
Q ss_pred ceEEEEEECCCCCeeEEEecCcchHHHHHHHhhhccccccccccccc
Q 000230 27 TVTEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLS 73 (1822)
Q Consensus 27 ~~~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~ 73 (1822)
.+..|.|.+|++..++-.-..++++++|+.++..+ .+....|.|.
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~--~~~~~~f~L~ 47 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK--GYPIDEYKLL 47 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc--CCCCCCEEEe
Confidence 36789999999999999999999999999999765 2334577774
No 482
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=43.67 E-value=47 Score=41.02 Aligned_cols=120 Identities=15% Similarity=0.070 Sum_probs=85.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC------C-----ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 953 GDLAVFYYRLQHTELALKYVNRALYLLHLTCGP------S-----HPNTAATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 953 ~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~------d-----hP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
-+.+.-.+..++|+.|..-|.+++......--. + .......+.|++.+-...+.+..|+..-..+++
T Consensus 226 k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~-- 303 (372)
T KOG0546|consen 226 KNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR-- 303 (372)
T ss_pred hccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc--
Confidence 344556678888888888888888766531110 1 112234577888899999999998887777665
Q ss_pred HHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000230 1022 QRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAAAWLEYFE 1085 (1822)
Q Consensus 1022 ~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~~~L~~l~ 1085 (1822)
.....+.+++..+..|..+.++++|++.++.|.+. -+++..+...+.+.....
T Consensus 304 ------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~-----~p~d~~i~~~~~~~~~~~ 356 (372)
T KOG0546|consen 304 ------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK-----APNDKAIEEELENVRQKK 356 (372)
T ss_pred ------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc-----CcchHHHHHHHHHhhhHH
Confidence 34566778999999999999999999999988763 456666655555554443
No 483
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=43.64 E-value=52 Score=28.78 Aligned_cols=26 Identities=12% Similarity=-0.029 Sum_probs=23.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 1036 YHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1036 l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
.+.||.+|..+|+++.|...+++.+.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 35799999999999999999998875
No 484
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=43.53 E-value=6.4e+02 Score=32.16 Aligned_cols=34 Identities=12% Similarity=-0.023 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHH
Q 000230 905 MTAGAYSLLAVVLYHTGD---------FNQATIYQQKALDINE 938 (1822)
Q Consensus 905 ~~a~al~nLA~ly~~lGd---------~eeAle~~qkAL~i~e 938 (1822)
+.+.+++|+|.+|..+|- +..|..+|++|--++.
T Consensus 104 EKasVLFNigAL~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~ 146 (384)
T cd09248 104 EKGSVLFNIGALHTQIGARQDRSCTEGTRRAIDAFQRAAGAFS 146 (384)
T ss_pred HHHHHHHhHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHH
Confidence 344556666666655443 5677777777766554
No 485
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.50 E-value=1.4e+02 Score=39.23 Aligned_cols=113 Identities=20% Similarity=0.211 Sum_probs=59.8
Q ss_pred cccccCchhhccccccccccCCCCCCCCCC--CCccccccCCcccCCCCCCCCc---------cCCCccccCCCCCCCCC
Q 000230 1542 QVEKRDEVETVKETTTKLSAAAPPFNPSTV--PVFGSIVVPAFKDHGGILPPPV---------NIPPMLKVNPVRRSPHQ 1610 (1822)
Q Consensus 1542 ~~~~~~~~~~~~~~~~~~~a~~~~~~~s~~--p~~~~~~~p~f~~~~~~~~~p~---------~~~~~~~~~~~~~~~~~ 1610 (1822)
+.+..-.-...+.+..-++--+|||-||-. |+.++--+|+ |+|- |||||.+..+
T Consensus 452 ~~pr~r~r~~~yqm~~P~~~~~pP~Vpsg~~~pp~~~~~~~~--------PP~~q~~~~~~~~~mPpm~~M~~------- 516 (861)
T KOG3161|consen 452 FSPRDRMRSSPYQMPPPQPYGPPPPVPSGMYAPPYDSRRIWR--------PPMYQRDDIIRSNSMPPMDVMHS------- 516 (861)
T ss_pred cCcccchhcCCCCCCCCCcCCCCCCCCccccCCCcccccCCC--------CCCCCcccchhccCCCCcccccc-------
Confidence 333333334566666667888889988877 7766543322 2333 8999998821
Q ss_pred CCcccCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCcCCCC-cccccCCCCCCCCCcc
Q 000230 1611 SATARVPYGPRLSGGYNRSGNRVPRKQLSFPNAEHTAEVNHFS-PPRIMNPH-AAEFVPSQPWIPNGYP 1677 (1822)
Q Consensus 1611 ~~~~~~~~g~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~p~-a~~~vp~~~~~~~g~~ 1677 (1822)
+.+- --+-+=||.+.++++-+- .|..++- +.-+.. +|+.+=+. -++|.=..|++|--|+
T Consensus 517 ~~y~-----ts~r~~~n~~~g~~~v~~--~Pps~p~-p~v~lp~~~~~~~~ts~~~~gg~~P~ip~q~~ 577 (861)
T KOG3161|consen 517 SVYQ-----TSLRERYNSLDGYYSVAC--QPPSEPR-PTVPLPREPCGHLKTSCEEQGGRKPDIPAQYH 577 (861)
T ss_pred ceee-----ccchhhcCCCCcceeccc--CCCCCCC-CceeccccccCCCCccccccCCCCCCCccccc
Confidence 1111 011122777777776441 1122221 222221 23333222 6777777788877766
No 486
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.28 E-value=7.4e+02 Score=30.76 Aligned_cols=72 Identities=14% Similarity=-0.076 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 989 NTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 989 ~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
..+.+...||.+|...++|..|...+.- +..-.-....+.-..+..+..+|.+|...++..+|..+..++--
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSi 172 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASI 172 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4567888999999999999988876642 22111001112334567788999999999999999998887743
No 487
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=41.83 E-value=86 Score=40.48 Aligned_cols=80 Identities=20% Similarity=0.140 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000230 922 DFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRL---QHTELALKYVNRALYLLHLTCGPSHPNTAATYINVA 998 (1822)
Q Consensus 922 d~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~l---G~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA 998 (1822)
....|+..|.++++. .++....|.|.|.++... |+.-.|+.-...|+.+ +|....+++.|+
T Consensus 389 ~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~~la 452 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHFRLA 452 (758)
T ss_pred HHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHHHHH
Confidence 345677777777765 356667777778777665 4445566555556554 577888999999
Q ss_pred HHHHHCCCHHHHHHHHHHH
Q 000230 999 MMEEGLGNVHVALRYLHEA 1017 (1822)
Q Consensus 999 ~iy~~lGd~eeAl~~leeA 1017 (1822)
.++..++++.+|+++...+
T Consensus 453 ~aL~el~r~~eal~~~~al 471 (758)
T KOG1310|consen 453 RALNELTRYLEALSCHWAL 471 (758)
T ss_pred HHHHHHhhHHHhhhhHHHH
Confidence 9999999999999877543
No 488
>PRK09169 hypothetical protein; Validated
Probab=41.44 E-value=7.7e+02 Score=38.01 Aligned_cols=132 Identities=15% Similarity=-0.029 Sum_probs=56.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 000230 915 VVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATY 994 (1822)
Q Consensus 915 ~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al 994 (1822)
.++..+.+|.+.-.+-.-+..+..++....+......-..++.++..+.+|.+.-.+-.-+..+...+.-......+..-
T Consensus 671 N~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp~~~acr~A~~~LA~rL~~~~~l~~a~~a 750 (2316)
T PRK09169 671 NALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWPEEEACRAAAEALAGRLAADADLRQAMNP 750 (2316)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhccCccHHHHHHHHHHHHHhcChHHHhhcCH
Confidence 33333333333333344444444444332222222223445555555555544333322233333333211111112222
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHHHHHHc
Q 000230 995 INVAMMEEGLGNVHVALRYLHEALKCNQRLLGADHI-------QTAASYHAIAIALSLM 1046 (1822)
Q Consensus 995 ~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~dhp-------~tA~~l~nLA~~y~~l 1046 (1822)
..++..+..+-+|-+.-.+-+-++.+....-...++ ..+.+.+.++++...+
T Consensus 751 Q~lAnsLNaLsKwp~~~~c~~a~~~La~~lg~~~~p~~~f~~~~laq~aNa~aR~~~~~ 809 (2316)
T PRK09169 751 QGLANSLNALSKWPQEPACQQAALLLAERLGSAGLPFRTFTMAGLAQLANAMARLILKL 809 (2316)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccCCCchhhcCHHHHHHHHHHHHHHHhhc
Confidence 345555555555555555555556665554333333 4556666666666544
No 489
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=41.14 E-value=50 Score=30.46 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=48.0
Q ss_pred EEEEEECCCCCeeEEEecCcchHHHHHHHhhhcccccccccccccccccCcccCCcccccc---cCCceEEEe
Q 000230 29 TEITVETPDESQVTLKGISTDRILDVRKLLGVHVETCHLTSFTLSHEVRGSKLKDSVDVVS---LKPCHLTVE 98 (1822)
Q Consensus 29 ~~itV~~P~~~~i~l~~~~~d~V~dvrq~L~~~~~Tc~~T~fsL~~e~~G~~L~d~~el~~---lk~~~L~lV 98 (1822)
+-|.|++-.+.+|.|.+-++|+|-.|..-+-+.+.--.- .--|- +.|..++|-..-.. +.|++|.+|
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~-qqrli--~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQ-QQRLI--YAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCch-hhhhh--hccccccccccHHHhhhccceeEeeC
Confidence 357899999999999999999999999988876654321 11232 47888866544443 347888876
No 490
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=41.08 E-value=1.2e+03 Score=32.37 Aligned_cols=49 Identities=18% Similarity=0.120 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000230 1029 HIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDLRTQDAA 1078 (1822)
Q Consensus 1029 hp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp~t~~a~ 1078 (1822)
|...+.+|..+|.+-..+|-|+.|.- +++|..|..+..|..-..+++.+
T Consensus 938 ~~~aa~aye~~gK~~Ea~gay~sA~m-wrec~si~~q~~~~e~~~~AE~L 986 (1243)
T COG5290 938 HISAAKAYEVEGKYIEAHGAYDSALM-WRECGSISTQEKGYEFNLCAELL 986 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHhhhcchHHHHHHHhh
Confidence 44555566666666666666666543 34666777777776644444433
No 491
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=41.00 E-value=1.2e+03 Score=32.36 Aligned_cols=20 Identities=20% Similarity=0.094 Sum_probs=13.1
Q ss_pred CCCcceeEEECCEEEEEeec
Q 000230 404 AASIVHEERVGDLIIKVARD 423 (1822)
Q Consensus 404 ~~~~~~~~~~~nIff~~a~D 423 (1822)
+...+.+|..++-.-+|.+|
T Consensus 347 e~~nTl~f~d~~~I~~V~f~ 366 (1243)
T COG5290 347 EEKNTLLFRDGERILRVFFS 366 (1243)
T ss_pred ccCcEEEEecCCeEEEEEee
Confidence 34566677777766667665
No 492
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=40.76 E-value=6.3e+02 Score=30.72 Aligned_cols=116 Identities=13% Similarity=-0.060 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhCCC-
Q 000230 950 KSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLLGAD- 1028 (1822)
Q Consensus 950 ~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~G~d- 1028 (1822)
..+..||..+...|+...|.-+|--|=-........+.+... ...+|. ....-.++ -.+.+.++......+.+
T Consensus 117 ~~l~~LGd~L~~~g~~~aA~iCYllag~~~~~~~~~~~~~~~--~~llg~---~~~~~~~~-~~~tEiyEya~~l~~~~~ 190 (284)
T PF12931_consen 117 QALCALGDRLWQRGRVEAAHICYLLAGNPLSPIPWLDDSNSR--FSLLGA---SSFASPEA-IILTEIYEYALSLSSNNP 190 (284)
T ss_dssp -TT--HHHHHHHTT-HHHHHHHHHHTT---SSSBSSTTS--B----SSS------TTSHHH-HHHHHHHHHHHHT---ST
T ss_pred HHHHHHHHHHHhCCCcchhHHHHhHcCCccCCcccccccchh--hhhccC---CccccHHH-HHHHHHHHHHHHhhccCC
Confidence 345559999999999998888886441111000000111110 011111 00000111 12223444433331111
Q ss_pred ---cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhCCCCH
Q 000230 1029 ---HIQTAASYHAIAIALSLMEAYSLSVQHEQTTLQILQAKLGSEDL 1072 (1822)
Q Consensus 1029 ---hp~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~I~k~~LG~dhp 1072 (1822)
-+.........|.++...|...+|.+|++......+ ..+...+
T Consensus 191 ~~~~~~l~~~Kl~yA~~Lae~G~~~~A~kY~d~i~~~lk-~~~~~~~ 236 (284)
T PF12931_consen 191 QFGLPHLQPYKLQYASLLAEQGLLSEALKYCDAIASSLK-SLPKNSP 236 (284)
T ss_dssp T---CCCHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-TS-TTSH
T ss_pred CcCcHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-hCCccCh
Confidence 112233344569999999999999999987777665 4444443
No 493
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=40.62 E-value=2.6e+02 Score=31.35 Aligned_cols=106 Identities=13% Similarity=0.009 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000230 867 TLLESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHP 946 (1822)
Q Consensus 867 ~L~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp 946 (1822)
+.+++-..-+..|.|.+|.+++.+.++. ....++..+|..++.|.....|-.--++-..+.....--...+.-|
T Consensus 95 A~leqva~kis~~~~~eaK~LlnkIi~n------k~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kP 168 (220)
T PF10858_consen 95 AALEQVAIKISEKKYSEAKQLLNKIIEN------KEYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKP 168 (220)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCc
Confidence 3444455667789999999999999886 3456888899999999888765444344444444443323334456
Q ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000230 947 DTMKSYGDLAVFYYRLQHTELALKYVNRALYL 978 (1822)
Q Consensus 947 ~ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l 978 (1822)
..+.+-...|..-...|+-.+|+++++..+.-
T Consensus 169 FWatAtI~kaiwdik~nm~~~aeknL~~l~~S 200 (220)
T PF10858_consen 169 FWATATIIKAIWDIKNNMKNQAEKNLKNLLAS 200 (220)
T ss_pred hHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 65655555666677889999999998877653
No 494
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=39.31 E-value=71 Score=42.54 Aligned_cols=112 Identities=15% Similarity=0.121 Sum_probs=64.0
Q ss_pred cCCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH---cCCHHHHHHHHHHH
Q 000230 899 CGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYR---LQHTELALKYVNRA 975 (1822)
Q Consensus 899 ~G~dhp~~a~al~nLA~ly~~lGd~eeAle~~qkAL~i~er~lG~dhp~ta~ay~nLA~iy~~---lG~~eeAl~~~~rA 975 (1822)
+..-|...+....+|-..|....+|+.-+.+.+..-.+- .++ +-.++-...+..|.++.+ -|+-++|+.....+
T Consensus 193 lDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP-~t~--~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~l 269 (1226)
T KOG4279|consen 193 LDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIP-DTL--KVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPL 269 (1226)
T ss_pred cCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCc-chh--hhhccCceEEEeeehhcccCCCccHHHHHHHHHHH
Confidence 333344455667788888999999988777665433321 000 000111122333444433 36777888776666
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHH---------HCCCHHHHHHHHHHHHHH
Q 000230 976 LYLLHLTCGPSHPNTAATYINVAMMEE---------GLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 976 L~l~~~i~G~dhP~~a~al~nLA~iy~---------~lGd~eeAl~~leeALei 1020 (1822)
++. -|+-.|++ |+..|.+|. ..+..+.|++||++|.+.
T Consensus 270 ve~----eg~vapDm---~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 270 VEK----EGPVAPDM---YCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred HHh----cCCCCCce---eeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 553 34444543 444555554 456678899999999875
No 495
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.20 E-value=3.8e+02 Score=37.57 Aligned_cols=100 Identities=14% Similarity=0.081 Sum_probs=50.6
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHHCCCHHHHHHH--HHHHHHHHHHhhCCCcH-------
Q 000230 961 RLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAM-MEEGLGNVHVALRY--LHEALKCNQRLLGADHI------- 1030 (1822)
Q Consensus 961 ~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~-iy~~lGd~eeAl~~--leeALei~~~~~G~dhp------- 1030 (1822)
......-++.|+++++..++.....-|...+..|..... .-...++-++|.+. .++.+...+.. ..-++
T Consensus 603 ~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s-~~Y~p~~~L~~~ 681 (877)
T KOG2063|consen 603 KSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESS-DLYDPQLLLERL 681 (877)
T ss_pred hhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhh-cccCcchhhhhc
Confidence 445556677888888776654221113333322222211 11112233455555 33333332221 11122
Q ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 000230 1031 QTAASYHAIAIALSLMEAYSLSVQHEQTTLQ 1061 (1822)
Q Consensus 1031 ~tA~~l~nLA~~y~~lGd~eeAi~~lekAL~ 1061 (1822)
.....|...|.++.++|+.++|+..|-.-+.
T Consensus 682 ~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 682 NGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred cchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 2245677788888999999999888765554
No 496
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=39.11 E-value=1.3e+03 Score=32.25 Aligned_cols=143 Identities=10% Similarity=-0.043 Sum_probs=71.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhhhhhccCCCchhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000230 869 LESSKTSLDKGKLEDAVNYGSKALSKLMSVCGPYHRMTAGAYSLLAVVLY-HTGDFNQATIYQQKALDINERELGLDHPD 947 (1822)
Q Consensus 869 ~~lG~~~~~~G~yeeAie~~~eAL~l~~~i~G~dhp~~a~al~nLA~ly~-~lGd~eeAle~~qkAL~i~er~lG~dhp~ 947 (1822)
..+-.+++..|++++-...-+++-+++ +..+.+..-| ....+++ ..++..++...|++||--+..+ .-.-+
T Consensus 117 v~Li~llrk~~dl~kl~~ar~~~~~~~-----pl~~~lWl~W-l~d~~~mt~s~~~~~v~~~~ekal~dy~~v--~iw~e 188 (881)
T KOG0128|consen 117 VQLIGLLRKLGDLEKLRQARLEMSEIA-----PLPPHLWLEW-LKDELSMTQSEERKEVEELFEKALGDYNSV--PIWEE 188 (881)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhc-----CCChHHHHHH-HHHHHhhccCcchhHHHHHHHHHhcccccc--hHHHH
Confidence 344455666777665444433333332 1122222111 1112221 1267777888888887643211 00011
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000230 948 TMKSYGDLAVFYYRLQHTELALKYVNRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHEALKC 1020 (1822)
Q Consensus 948 ta~ay~nLA~iy~~lG~~eeAl~~~~rAL~l~~~i~G~dhP~~a~al~nLA~iy~~lGd~eeAl~~leeALei 1020 (1822)
.+..+...+..+...++++.-...|.+||...-..+.. -..+...|..+-..|...-..++-+.++...|.+
T Consensus 189 ~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~-G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~ 260 (881)
T KOG0128|consen 189 VVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITE-GAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ 260 (881)
T ss_pred HHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcc-cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 22223333334455677888888899988765433321 2234455555555565555455666666666554
No 497
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=38.99 E-value=3.5e+02 Score=33.93 Aligned_cols=30 Identities=10% Similarity=0.081 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000230 992 ATYINVAMMEEGLGNVHVALRYLHEALKCN 1021 (1822)
Q Consensus 992 ~al~nLA~iy~~lGd~eeAl~~leeALei~ 1021 (1822)
.+++..|..+...+++-+|+..|+.|+...
T Consensus 256 ~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~ 285 (346)
T cd09240 256 LAEYHQSLVAKAQKKFGEEIARLQHALELI 285 (346)
T ss_pred HHHHHHHHHhhhhchHHHHHHHHHHHHHHH
Confidence 344445555555555556666665555543
No 498
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=38.74 E-value=1.6e+02 Score=28.79 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh
Q 000230 990 TAATYINVAMMEEGLGNVHVALRYLHEALKCNQRLL 1025 (1822)
Q Consensus 990 ~a~al~nLA~iy~~lGd~eeAl~~leeALei~~~~~ 1025 (1822)
.+..+...|.-+-..|++++|+.+|++|++...++.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 355566777888899999999999999999887664
No 499
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=38.29 E-value=2e+02 Score=37.14 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=22.4
Q ss_pred CCCCCCCCCCcccCCCC-----ccccCCCCCCCCC
Q 000230 1603 PVRRSPHQSATARVPYG-----PRLSGGYNRSGNR 1632 (1822)
Q Consensus 1603 ~~~~~~~~~~~~~~~~g-----~~~~~g~~~~~~~ 1632 (1822)
++...|-|+-|-|+|.| .-.+.|+..+|+.
T Consensus 472 ~~s~~P~q~s~~~~pp~~r~a~~~a~Pg~p~~~~~ 506 (554)
T KOG0119|consen 472 QSSSLPQQASTTSIPPGDRQAQAAAPPGAPFHGGN 506 (554)
T ss_pred ccccCCcccccccCCcccccccccCCCCCCCCCCC
Confidence 46667777778889988 7777777766665
No 500
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=37.95 E-value=5.4e+02 Score=32.32 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=10.9
Q ss_pred hHHHHHHHHhhhhhhh
Q 000230 881 LEDAVNYGSKALSKLM 896 (1822)
Q Consensus 881 yeeAie~~~eAL~l~~ 896 (1822)
+.+|..+|++|--+++
T Consensus 136 lK~A~~~fq~AAG~F~ 151 (353)
T cd09246 136 IKQACHAFQAAAGAFA 151 (353)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777777765553
Done!