Query 000232
Match_columns 1822
No_of_seqs 431 out of 1138
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 00:32:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/000232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/000232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03076 ARF guanine nucleotid 100.0 0E+00 0E+00 3297.0 163.8 1749 1-1822 1-1778(1780)
2 KOG0929 Guanine nucleotide exc 100.0 1E-267 2E-272 2552.5 103.7 1511 15-1816 1-1513(1514)
3 KOG0928 Pattern-formation prot 100.0 8E-123 2E-127 1173.7 97.0 1219 64-1530 62-1326(1386)
4 COG5307 SEC7 domain proteins [ 100.0 6.4E-89 1.4E-93 883.4 35.9 991 403-1553 1-1023(1024)
5 KOG1848 Uncharacterized conser 100.0 7E-64 1.5E-68 631.4 59.5 1010 8-1531 6-1133(1610)
6 KOG0930 Guanine nucleotide exc 100.0 1.3E-49 2.8E-54 432.3 14.4 191 662-852 60-250 (395)
7 cd00171 Sec7 Sec7 domain; Doma 100.0 1.8E-48 3.8E-53 430.3 20.4 183 663-845 1-185 (185)
8 PF01369 Sec7: Sec7 domain; I 100.0 3.9E-48 8.5E-53 430.7 19.6 185 661-845 2-190 (190)
9 smart00222 Sec7 Sec7 domain. D 100.0 9.5E-48 2.1E-52 426.0 20.5 183 663-845 2-187 (187)
10 KOG0931 Predicted guanine nucl 100.0 3.3E-48 7.2E-53 444.0 13.3 195 664-858 198-398 (627)
11 KOG1846 Uncharacterized conser 100.0 1.5E-43 3.4E-48 424.5 51.6 904 759-1725 403-1590(1777)
12 PF12783 Sec7_N: Guanine nucle 100.0 3.3E-33 7.2E-38 306.5 18.1 162 393-555 2-168 (168)
13 KOG0932 Guanine nucleotide exc 99.9 3.1E-27 6.6E-32 277.8 12.6 153 695-847 307-459 (774)
14 PF09324 DUF1981: Domain of un 99.8 7.2E-22 1.6E-26 191.4 6.0 86 1212-1297 1-86 (86)
15 KOG2023 Nuclear transport rece 96.5 4.7 0.0001 52.1 33.9 425 1135-1697 128-614 (885)
16 PLN03076 ARF guanine nucleotid 96.1 1.3 2.9E-05 64.5 28.8 148 1383-1555 1130-1281(1780)
17 KOG1824 TATA-binding protein-i 92.6 53 0.0011 44.7 29.5 130 1395-1555 574-705 (1233)
18 PF01602 Adaptin_N: Adaptin N 91.3 59 0.0013 42.5 32.2 126 1155-1297 54-179 (526)
19 KOG2171 Karyopherin (importin) 90.6 33 0.00072 47.6 24.0 134 1387-1547 115-251 (1075)
20 PF01602 Adaptin_N: Adaptin N 90.4 33 0.0007 44.9 24.2 294 1131-1533 188-486 (526)
21 PF03378 CAS_CSE1: CAS/CSE pro 88.8 84 0.0018 40.5 27.4 273 1178-1518 66-356 (435)
22 PF14500 MMS19_N: Dos2-interac 85.1 39 0.00085 40.4 18.0 159 1242-1442 95-260 (262)
23 PF11864 DUF3384: Domain of un 82.1 28 0.00061 45.1 16.5 141 1125-1278 207-352 (464)
24 PF12348 CLASP_N: CLASP N term 80.4 81 0.0018 36.4 18.1 179 1155-1347 24-208 (228)
25 KOG1848 Uncharacterized conser 80.0 3.1E+02 0.0066 39.6 33.4 250 1154-1434 858-1149(1610)
26 KOG2171 Karyopherin (importin) 74.0 4E+02 0.0086 37.8 34.2 333 1126-1534 70-422 (1075)
27 PF12717 Cnd1: non-SMC mitotic 70.9 38 0.00082 38.0 11.5 112 1196-1322 1-112 (178)
28 PF12348 CLASP_N: CLASP N term 67.7 82 0.0018 36.4 13.9 105 425-535 21-125 (228)
29 PF11640 TAN: Telomere-length 66.9 38 0.00083 37.2 10.2 136 1397-1542 11-154 (155)
30 PF12783 Sec7_N: Guanine nucle 65.1 79 0.0017 35.0 12.5 120 1133-1257 8-145 (168)
31 PF12719 Cnd3: Nuclear condens 64.9 38 0.00083 41.2 10.8 65 1403-1490 77-144 (298)
32 KOG0929 Guanine nucleotide exc 64.2 1.3E+02 0.0028 43.8 16.4 237 1171-1444 1063-1322(1514)
33 PF10508 Proteasom_PSMB: Prote 61.9 4.4E+02 0.0096 34.7 20.3 120 1387-1530 287-420 (503)
34 KOG2956 CLIP-associating prote 58.9 3.7E+02 0.008 34.6 17.3 196 1184-1427 288-486 (516)
35 KOG1241 Karyopherin (importin) 57.3 6.3E+02 0.014 34.5 19.6 175 1284-1524 104-282 (859)
36 cd00020 ARM Armadillo/beta-cat 55.4 37 0.00081 34.2 7.3 107 1187-1297 11-118 (120)
37 PF08767 CRM1_C: CRM1 C termin 55.4 3.1E+02 0.0068 33.8 16.4 149 1227-1402 66-226 (319)
38 cd00020 ARM Armadillo/beta-cat 52.8 71 0.0015 32.1 8.8 110 1392-1529 9-119 (120)
39 KOG1248 Uncharacterized conser 51.8 9.5E+02 0.021 34.5 36.9 240 1229-1534 97-345 (1176)
40 PF12717 Cnd1: non-SMC mitotic 50.4 94 0.002 34.8 10.0 92 1404-1531 2-93 (178)
41 PF02985 HEAT: HEAT repeat; I 49.8 27 0.00058 27.4 3.9 28 1392-1419 2-29 (31)
42 KOG1824 TATA-binding protein-i 49.7 9.4E+02 0.02 33.8 23.4 42 1236-1277 577-618 (1233)
43 PF12755 Vac14_Fab1_bd: Vacuol 49.1 1.1E+02 0.0023 31.1 9.1 74 1225-1300 24-97 (97)
44 PF08767 CRM1_C: CRM1 C termin 48.8 89 0.0019 38.6 10.2 123 1390-1534 71-198 (319)
45 PF08427 DUF1741: Domain of un 47.0 2.5E+02 0.0055 33.2 12.9 149 1383-1546 58-223 (237)
46 PLN03205 ATR interacting prote 45.0 1.6E+02 0.0035 36.6 11.0 92 1159-1254 347-442 (652)
47 PF10508 Proteasom_PSMB: Prote 43.5 9.1E+02 0.02 31.8 23.9 263 1196-1529 51-318 (503)
48 KOG2023 Nuclear transport rece 42.8 1.7E+02 0.0037 38.8 11.2 153 1175-1343 124-283 (885)
49 KOG4535 HEAT and armadillo rep 41.2 9.2E+02 0.02 31.2 16.8 58 1487-1544 281-338 (728)
50 KOG2956 CLIP-associating prote 41.1 3.2E+02 0.007 35.1 13.0 113 1391-1530 288-400 (516)
51 PF09324 DUF1981: Domain of un 40.8 67 0.0015 31.7 6.0 54 1474-1527 32-85 (86)
52 PF11864 DUF3384: Domain of un 40.8 9.5E+02 0.021 31.3 24.3 205 1285-1557 149-358 (464)
53 PTZ00429 beta-adaptin; Provisi 40.4 1.2E+03 0.026 32.4 22.2 239 1184-1509 257-527 (746)
54 PF12719 Cnd3: Nuclear condens 38.3 3.5E+02 0.0076 32.9 13.1 105 1182-1295 26-139 (298)
55 KOG1967 DNA repair/transcripti 37.5 3.3E+02 0.0072 37.6 13.0 162 1245-1443 143-308 (1030)
56 PF10274 ParcG: Parkin co-regu 33.7 27 0.00058 39.4 2.3 39 70-108 79-117 (183)
57 PF04510 DUF577: Family of unk 33.1 4E+02 0.0086 30.0 10.8 152 1315-1531 7-165 (174)
58 KOG0166 Karyopherin (importin) 32.7 4.7E+02 0.01 34.3 13.1 213 1187-1448 156-375 (514)
59 PRK09687 putative lyase; Provi 32.4 5.9E+02 0.013 30.8 13.5 93 1189-1294 60-152 (280)
60 PLN03205 ATR interacting prote 31.2 7.6E+02 0.017 31.1 13.6 159 1265-1439 366-545 (652)
61 KOG1766 Enhancer of rudimentar 30.6 81 0.0018 31.4 4.5 44 1465-1508 12-63 (104)
62 KOG0946 ER-Golgi vesicle-tethe 28.6 1.4E+03 0.031 31.5 16.3 111 1198-1343 38-149 (970)
63 cd03568 VHS_STAM VHS domain fa 28.2 2.7E+02 0.0059 30.3 8.7 80 1193-1295 47-129 (144)
64 PF12755 Vac14_Fab1_bd: Vacuol 27.6 6.4E+02 0.014 25.6 10.6 95 1406-1530 2-96 (97)
65 KOG1062 Vesicle coat complex A 26.1 1.4E+03 0.031 31.5 15.9 84 1233-1326 298-396 (866)
66 cd03565 VHS_Tom1 VHS domain fa 25.9 5.7E+02 0.012 27.7 10.6 62 471-532 51-114 (141)
67 PF13513 HEAT_EZ: HEAT-like re 25.0 97 0.0021 27.3 3.9 52 1477-1528 4-55 (55)
68 PF05004 IFRD: Interferon-rela 24.8 4.7E+02 0.01 32.2 11.0 81 1474-1554 57-140 (309)
69 PF10521 DUF2454: Protein of u 24.0 7.7E+02 0.017 29.8 12.6 144 1384-1547 113-269 (282)
70 cd03569 VHS_Hrs_Vps27p VHS dom 23.5 4.1E+02 0.0088 28.9 9.0 80 1193-1295 51-133 (142)
71 PF08161 NUC173: NUC173 domain 23.3 1.2E+03 0.026 26.9 13.6 81 1709-1813 112-195 (198)
72 KOG1060 Vesicle coat complex A 21.8 2.2E+03 0.048 29.8 16.2 161 1194-1420 298-459 (968)
73 cd03568 VHS_STAM VHS domain fa 21.4 5.8E+02 0.013 27.8 9.6 60 470-532 48-109 (144)
No 1
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=0 Score=3296.98 Aligned_cols=1749 Identities=53% Similarity=0.866 Sum_probs=1459.7
Q ss_pred CCCCCCCCCcccccccchHHHHHHHHhhhhhcchhHHHHHHHHHHHhhccCCC-------------CCcccccccC----
Q 000232 1 MSASQTLGGPSRCGRAVGPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSISDD-------------PSQVSSSLFG---- 63 (1822)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~l~~i~~~k~~kk~~~l~~a~e~al~~lk~~~~~-------------~~~~~~~~~~---- 63 (1822)
|+++++ ++++++||+++||+|+++|+||||++|++||++||+.|++.... .++.+.|+.+
T Consensus 1 ~~~~~~---~~~~~~~~~~ale~i~~~k~~rk~~~l~~a~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (1780)
T PLN03076 1 MASSEA---DSRLGKVVSPALEKIIKNASWRKHSKLAHECKAVIERLNSPEKNPPSTSSAAADSASASSLPGPLHDGGSI 77 (1780)
T ss_pred CCcccc---cchhhHHHHHHHHHHHhhHHhhccHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccc
Confidence 667777 99999999999999999999999999999999999999976532 1122223322
Q ss_pred -CCcCCcccchHHHHHhhcCCCcchHHHHHHHHHHHHhccCCcCccCCCCCCCCCCCCCCCCcccccHHHHHHHHHHhhh
Q 000232 64 -LSQNDAGLVLHPIFLALDSAYPKVVEPALECAFKLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVC 142 (1822)
Q Consensus 64 -~~~~~~~~i~~P~~lAc~t~~~kl~~~ALdclqKLia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~ii~tIc~c~ 142 (1822)
++.++|+.||.||++||+||++||+++|||||||||+||||.|+.++.++ +.++|||++|++||+|+
T Consensus 78 ~~~~~~~~~i~~pl~lac~s~~~ki~~~ALdcl~KLis~~~i~~~~~~~~~------------~~~~lid~~i~~Ic~c~ 145 (1780)
T PLN03076 78 EYSLAESELILSPLINACGTGSAKIVDPALDCIQKLIAHGYLRGEADPSGG------------PEALLLAKLIESVCKCH 145 (1780)
T ss_pred cccccCHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhcCCCCCCCCC------------ccccHHHHHHHHHHhhc
Confidence 23468999999999999999999999999999999999999998754322 36689999999999999
Q ss_pred CCCCCchHHHHHHHHHHHhccCCcccchhhHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHhhhccccCCCCcc
Q 000232 143 GIGEEPIELSVLRVLLSAVRSPCLLIRGDCLLLIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIVFTRVEEDSMNVPHFK 222 (1822)
Q Consensus 143 ~~td~~vqLqIlkaLl~~v~s~~~~vhg~~Ll~avr~cyni~l~Sk~~~nq~tA~atLtQmv~~VF~Rv~~~~~~~~~~~ 222 (1822)
+.+||+|||||||+||++|+++++.|||++||+|||||||||+.|||++||+||||||||||++||+||+.+....+ .+
T Consensus 146 ~~~de~iqLqilk~Ll~~v~s~~~~vhg~~LLkaVR~cyni~l~Sks~~nq~tA~atLtQmv~~VF~R~e~~~~~~~-~~ 224 (1780)
T PLN03076 146 DLGDEGIELLVLKTLLSAVTSTSLRIHGDCLLQAVRTCYDIYLGSKNVVNQTTAKASLIQMLVIVFRRMEADSSTVP-IQ 224 (1780)
T ss_pred cCCchHHHHHHHHHHHHHHcCCCceeEHHHHHHHHHHhheeeecCCcHHHHHHHHHHHHHHHHHHHHHhhccccccc-cc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998765444 55
Q ss_pred cchhhhhhhhhhccCCCCCccccccccccccccCCCCCCchhhhhhhhccccCCCCCCCcccccccccccccccccCCcc
Q 000232 223 TISVSELLEFADKSLNEGSSIHFCQNFINEVMGASEGVFEPAMLQLKQNVSTKLPNGDTEVATEDEKGEVVKEGEKGEGE 302 (1822)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1822)
++.+++.+++...+..+++..+++|+|+++++++.++...++...- .. .+...+ .+.+ +.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~--~~~~-----------~~ 284 (1780)
T PLN03076 225 PIVVAELMEPAEKSDSDTSMTQFVQGFITKIMQDIDGVLNPATAGK-----SS--GSGAHD--GAFE-----------TT 284 (1780)
T ss_pred ccccccccccccccccccchhhhhhhhhhhhccccccccCcccccc-----cc--cccccc--cccc-----------cc
Confidence 6666666666666666667778999999988877765433321000 00 000000 0000 00
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCcCCCcccccCccCCCCCCCCCCcCCCcccccCccCccccccccCCCCCCCCC
Q 000232 303 VAKEGENGGGRVPKEGETGEGQVPKEGEKGGGQALKEGEKGEGQAPKEGKEGEGQVLKDDEKGEDRVVKEGEKGEGGEGQ 382 (1822)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1822)
....+.+ +... ... .+.... .++. +...+.. ...+...++..+.+. .
T Consensus 285 ~~~~~~~-~~~~-~~~--~~~~~~--~~~~---~~~~~~~----------------~~~~~~~~~~~~~~~--------~ 331 (1780)
T PLN03076 285 ATVETTN-PADL-LDS--TDKDML--DAKY---WEISMYK----------------SALEGRKGELADGEV--------E 331 (1780)
T ss_pred cccCCCC-cchh-hcc--cccccc--cccc---ccccccc----------------ccccccccccccccc--------c
Confidence 0000000 0000 000 000000 0000 0000000 000000000000000 0
Q ss_pred CCCCCCCCCchhhhhhHHHHHHHHHhhccCCCCCCCCcchhhhhhhHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHH
Q 000232 383 GNGGAELGGESKIREDGFLLFKNICKLSMKFSSQENPDDLILLRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCL 462 (1822)
Q Consensus 383 ~~~~~~~~~~~~~~~Da~lvfr~LCkLs~k~~~~~~~~d~~~~rsk~lsLeLi~~iL~~~g~~f~~~~~~~~~ik~~Lc~ 462 (1822)
...+.++++.++++||||+|||+|||||||+++.++..|++.+|||+||||||++||+++|++|++||.|+++||+|||+
T Consensus 332 ~~~~~~~~~~~~~~kDAflvFr~lCkLs~K~~~~~~~~d~~~~rsKllsL~Li~~ile~~g~~f~~~~~fi~~ik~~Lc~ 411 (1780)
T PLN03076 332 KDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQLMRGKILALELLKILLENAGAVFRTSDRFLGAIKQYLCL 411 (1780)
T ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHHhCCCCCCCccccHHHHHHHHHHHHHHHHHHhcccHhhhcCHHHHHHHHHHHHH
Confidence 00122344567899999999999999999999988888999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHhChhHHHHHH
Q 000232 463 SLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVF 542 (1822)
Q Consensus 463 ~L~~n~~S~~~~vf~lsl~If~~L~~~~r~~LK~Eievfl~~i~l~ile~~~~~~~~qk~~vLe~l~~l~~dp~~lveiy 542 (1822)
+|+||++|++++||+++|+|||+|+.+||.|||.||||||++||++++|+..+++++||+++|++|.+||+||++++|||
T Consensus 412 sL~~n~~S~~~~vf~lsl~If~~L~~~~R~~LK~eievF~~~I~l~ile~~~~~s~~qK~~~L~~L~~lc~dp~~lveiy 491 (1780)
T PLN03076 412 SLLKNSASSLMIIFQLSCSIFISLVSRFRAGLKAEIGVFFPMIVLRVLENVAQPNFQQKMIVLRFLDKLCVDSQILVDIF 491 (1780)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 99999999999999999999999999999999999999999999999998767889999999999999999999999999
Q ss_pred HhcCCCCCCccHHHHHHHHHHhhccCCCCCCCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCC-
Q 000232 543 VNYDCDVDSPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSET- 621 (1822)
Q Consensus 543 ~NYDCd~~~~Nife~lv~~L~k~a~~~~~~~~~~~~~~qe~~l~~~aL~~Lv~il~sl~~w~~~~~~~~~~~~~~~~~~- 621 (1822)
+|||||.+++||||+||+.|+|+|+|.|++.+++..|+||+.+|+.||+||++||+||++|+++++..++.......+.
T Consensus 492 vNYDCD~~~~NifE~lv~~Lsk~a~~~~~~~~~~~~~~qe~~lk~~aLecLv~il~sl~~w~~~~~~~~~~~~~~~~~~~ 571 (1780)
T PLN03076 492 INYDCDVNSSNIFERMVNGLLKTAQGVPPGVETTLLPPQEAAMKLEAMKCLVAILRSMGDWMNKQLRLPDPASLKKLDAV 571 (1780)
T ss_pred hccCCCCCCchHHHHHHHHHHHHhcCCCCccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhh
Confidence 9999999999999999999999999988777777788999999999999999999999999998765433211111110
Q ss_pred CCCCCCCC--C--CCCCCCCCCCcCccccCCCCCCChHHHHHHHHhHHHHHHHHhhhccCchhHHHHHHHcCCCCCCHHH
Q 000232 622 DSSIDNNS--I--PNGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEE 697 (1822)
Q Consensus 622 ~~s~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~K~~l~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~ 697 (1822)
..+....+ . .++.+ ...+.....+.+...++++.+|++|++|..+++|+.+||+|||+||+||+++|+++++|++
T Consensus 572 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~K~~l~~g~~~FN~~Pk~Gi~~L~~~~~i~~~p~~ 650 (1780)
T PLN03076 572 ENNLEPGSLPVANGNGDE-NGEGSDSHSELSSETSDAATIEQRRAYKLELQEGISLFNRKPKKGIEFLINANKVGESPEE 650 (1780)
T ss_pred cccccccccccccccccc-ccccccccccccccCCcHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHcCCCCCCHHH
Confidence 00000000 0 00000 0011111222223456788999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCChhhHHhhhcccchhHHHHHHHHHHhcCCCCCChhHHHHHHhccCcCCCchHHHHHHHHHHHHHHHHhC
Q 000232 698 VASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCN 777 (1822)
Q Consensus 698 iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~~df~~~~~~~aLR~fl~~frLpgE~q~Idri~e~Fa~~y~~~n 777 (1822)
||+||++++||||++||||||++++++++||++|++.|||+|++||+|||.||++||||||+|+||||||+||+|||+||
T Consensus 651 iA~FL~~~~~Ldk~~iGeyLg~~~~~~~~vl~~yv~~fdF~g~~~d~ALR~fL~~FrLPGEaQ~IdRime~Fa~rY~~~N 730 (1780)
T PLN03076 651 IAAFLKDASGLNKTLIGDYLGEREDLSLKVMHAYVDSFDFQGMEFDEAIRAFLQGFRLPGEAQKIDRIMEKFAERYCKCN 730 (1780)
T ss_pred HHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhCCcCCCCHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccHHHHHHHHHHHhhhhhhhhhccCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCCchhh
Q 000232 778 PSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESK 857 (1822)
Q Consensus 778 p~~f~~~d~~y~laysiimLntdlhn~~vk~kmt~~~Fi~n~~gi~~~~dlp~~~L~~iY~~I~~~ei~~~~~~~~~~~~ 857 (1822)
|+.|.++|++|+|+||+||||||+|||++|+|||+++|++|+||+|+|+|||+|||++||++|+++||+|++|+.++.++
T Consensus 731 p~~f~~~D~~yvLaysiIMLnTDlHnp~vk~kMt~~~Fi~n~rgin~g~dlp~e~L~~iY~~I~~~ei~~~~~~~~~~~~ 810 (1780)
T PLN03076 731 PKAFSSADTAYVLAYSVIMLNTDAHNPMVKNKMSADDFIRNNRGIDDGKDLPEEFMRSLYERISKNEIKMKEDDLVPQQK 810 (1780)
T ss_pred CCcCCCHHHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHhCcccCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987766655
Q ss_pred hhhhhhhhcccccchhhhhhhhHHHHHhhhhHHHHHHHHHHhhhccCCCCCceeecCCchhhhhhHHHhhHHHHHHHHhh
Q 000232 858 QANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVT 937 (1822)
Q Consensus 858 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~r~Mfe~~W~piLaalS~~ 937 (1822)
+....+.+.|++++++.+.|++.+++|+++++++++++++.++++..+.++.|+.++|.+|+|+||+++|+|++||||++
T Consensus 811 ~~~~~~~~~g~~~~~~~~~r~~~~e~~~~~s~~l~~~~~~~~k~~~~~~~~~f~~a~~~~~~~~mfe~~W~p~laalS~~ 890 (1780)
T PLN03076 811 QSANSNRILGLDSILNIVIRKRGEDSYMETSDDLIKHMQEQFKEKARKSESVYYAATDVVILRFMVEVCWAPMLAAFSVP 890 (1780)
T ss_pred cccccchhhhhHHHHhHhhHHHHHHHHHHhHHHHHHHHHHHHHHhhccccCceeecchHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555667788888888889988999999999999999999987776677889999999999999999999999999999
Q ss_pred hhccCcHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccCCCccccchhhHHHHHHHHHHHhhcCCchhhchHH
Q 000232 938 LDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEH 1017 (1822)
Q Consensus 938 l~~s~D~~~~~~~L~g~~~~i~ia~~fgL~~~rDafv~sL~kfT~L~~~~~~~~KNv~alraLl~iA~~~Gn~L~~sW~~ 1017 (1822)
|++++|++++..||+||+.||+|||.|||+++||+||++|||||+|+++.+|++||++|+|+||+||+++||+|++||++
T Consensus 891 ~~~s~d~~~~~~cL~G~~~~i~ia~~f~l~~~rdafv~~L~kfT~L~~~~emk~Knv~Aik~ll~ia~~~Gn~L~~sW~~ 970 (1780)
T PLN03076 891 LDQSDDEVVTFQCLEGFRHAIHVTAVMSMKTHRDAFVTSLAKFTSLHSPADIKQKNIDAIKAIVSIADEDGNYLQEAWEH 970 (1780)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHcCCCChhhhhHHHHHHHHHHHHHHHHhhhHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCccccccchhhhh-hhcccCCCCCccccCCCCCCcchhhccCCcccccccCCCCCCCCC
Q 000232 1018 ILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADE-KTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVT 1096 (1822)
Q Consensus 1018 IL~~is~le~lqli~~g~~~d~~~~~~p~~~~~~-~~~~~~~~~s~~~~~~~q~~~~~~~~~~~s~~st~~~~~~~~~lt 1096 (1822)
||+|||+|||+|||+.|++||..+...|..+.+. +..++...|...++++.+.+...+..+++++++...++.....++
T Consensus 971 IL~cISqLerl~Li~~gv~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 1050 (1780)
T PLN03076 971 ILTCVSRFEHLHLLGEGAPPDATFFAAPQNESDKSKQAKSPILPVLKRKGPGKLQYAAAAVRRGSYDSAGVGGKASGVVT 1050 (1780)
T ss_pred HHHHHHHHHHHHHhhcCCCcchhhhcccccccccccccccccccccccccccccchhhhhhcccccccccccccccccCC
Confidence 9999999999999999999987766555444332 222333444444333332222223344667776655555566788
Q ss_pred HHHHHHHhhhhhhhhhhhccchHHHHHhcccCCHHHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccccc
Q 000232 1097 PEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLV 1176 (1822)
Q Consensus 1097 ~eei~~~~~~~~~l~~i~~~~id~lF~~S~~L~~~Ai~~Fv~ALc~vS~eEl~s~~~Pr~FsLqKLveVa~~Nm~Rirl~ 1176 (1822)
++++.....++++++.|+++.+|+||++|++|+++||++||+|||+||++|+++++.||+|+|+|||||++|||+|||++
T Consensus 1051 ~~~~~~~~~~l~~l~~i~~~~idkIF~~S~~L~~eai~~fv~AL~~vS~eEl~~~~~pr~FsLqKLveIa~~Nm~Rirl~ 1130 (1780)
T PLN03076 1051 SEQMNNLVSNLNMLEQVGSFEMNRIFTRSQKLNSEAIIDFVKALCKVSMEELRSPSDPRVFSLTKIVEIAHYNMNRIRLV 1130 (1780)
T ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHhcccCCHHHHHHHHHHHHHhhHHHHccCCCCchhHHHHHHHHHHhcccchhee
Confidence 88988877777778889999999999999999999999999999999999999888899999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHH
Q 000232 1177 WSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQM 1256 (1822)
Q Consensus 1177 W~~IW~~L~~hf~~vg~h~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~cl~qm 1256 (1822)
|++||+++++||+++|||+|..|++||+|+||||||||++++||+||+||++||+||++||.++.+.+|||+|++|+.||
T Consensus 1131 W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qm 1210 (1780)
T PLN03076 1131 WSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQM 1210 (1780)
T ss_pred hHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCcccccccchHHHHHHHHHHHHcCCCCccccHHH
Q 000232 1257 VLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNA 1336 (1822)
Q Consensus 1257 l~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~A 1336 (1822)
|++++++|+||||+||+||+.|+.++++.+|+.||+++++|++|||+.++.+.+++|.|||+||.+|++++.++||||+|
T Consensus 1211 I~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~A 1290 (1780)
T PLN03076 1211 VLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNA 1290 (1780)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHH
Confidence 99999999999999999999999999999999999999999999999887555699999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcccccCCCCCCC-CCCC--CCCCCCcccCCCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHH
Q 000232 1337 IAFLRFCAVKLADGGLVCNEKGSVDGS-SSPP--VNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEV 1413 (1822)
Q Consensus 1337 I~~L~~~~d~L~~~~~~~~~~~~~~~~-~~~p--~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~eVR~~Alqt 1413 (1822)
|++||.|+++++++++.+..+...... +..+ ......+...+.+.+.+.++|||||++|++++.|+|+|||++||+|
T Consensus 1291 I~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqt 1370 (1780)
T PLN03076 1291 IAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQV 1370 (1780)
T ss_pred HHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999999999998775432211100000 0000 0111111122345556778999999999999999999999999999
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHhHHhhhhhccccCCCCCCCCCCCCCC--CCCCccccccHHHhHHHHHHHHHHHHHhh
Q 000232 1414 LFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTS--HSPLSEGSTWDSETAAIGAECLVDIFICF 1491 (1822)
Q Consensus 1414 LF~iL~~~G~~f~~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~--~~~~~~~~~W~~eT~~laL~~lv~lf~~y 1491 (1822)
||+||..||+.|++++|+.||++||||||+.++..++.....+++.+.. ...+.+.++|++|||++||+++++||++|
T Consensus 1371 LF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~f 1450 (1780)
T PLN03076 1371 LFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKF 1450 (1780)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987655433221111100 11235789999999999999999999999
Q ss_pred hchhhhhHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhccchhHHhhcccCCCCC
Q 000232 1492 FDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKETTASTLPSFVKVLRTMNDIEI 1571 (1822)
Q Consensus 1492 f~~l~~~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll~~~~~~f~~~~W~~i~~~l~~~f~~T~p~~~~~~~~~~~~~~ 1571 (1822)
|+.+..+++++|++|.+||+|+|++|||+|++||++||..||++|++++|++|+++|.++|+.|+|+|........ .
T Consensus 1451 Fd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~T~p~~~~~~~~~~---~ 1527 (1780)
T PLN03076 1451 YPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLKEAANATLPDFSYVVSGEY---M 1527 (1780)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhCCchhhcccccc---c
Confidence 9999999999999999999999999999999999999999999999999999999999999999999764321110 1
Q ss_pred CCCCCcccccccCCCCCCCCCCCchhhhhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHH
Q 000232 1572 PNTSQSYADMEMDSDHGSINDNIDEDNLQTAAYVVSRMKSHITLQLLSVQVAANLYKLHLRLLSTTNVKILLDIFSSIAS 1651 (1822)
Q Consensus 1572 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cvlQLlLIq~~~el~~~~~~~l~~~~l~~L~~~L~~s~~ 1651 (1822)
|.......+.+....+....+.......++....+.++|||||+||||||+++|||+++|.+||++|+++|++||++||+
T Consensus 1528 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~kc~~v~QLllI~~~~~l~~~~~~~l~~~~l~~l~~~L~~s~~ 1607 (1780)
T PLN03076 1528 PAENIQDSENAEAASSSTADNDAEAERSRRLYAAISDAKCRAAVQLLLIQAVMEIYNMYRPRLSAKNTLVLFDALHTVAS 1607 (1780)
T ss_pred ccccccccccccccccccccchhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 21110101110000000011111111122332244457888899999999999999999999999999999999999999
Q ss_pred HHHhhcCCHHHHHHHHHhhhcccCCCCCchhhhhhHHHHHHHHHHHHhcCCCCchhHHhHHHHHHHHHHHHHHHHHccCc
Q 000232 1652 HAHELNSELVLQKKLQRVCLVLELSDPPMVHFENESYQTYLNFLRDSLTGNPSASEELNIESHLVEACEMILQMYLNCTG 1731 (1822)
Q Consensus 1652 fA~~FN~d~~LR~~L~k~g~~~~~~~PnLLkQEt~S~~~~l~iLf~m~~d~~~~~~~~~ie~~L~~lc~~il~~Y~~~~~ 1731 (1822)
|||+||+|++||++|||+|||+++++|||||||++|+++|++|||+||+|+++...+.++|++|+++|.+||++|+++++
T Consensus 1608 fA~~fN~d~~lR~~l~~~g~~~~~~~PnLLkqE~~s~~~~l~il~~~~~d~~~~~~~~~~~~~l~~~c~~il~~y~~l~~ 1687 (1780)
T PLN03076 1608 HAHKINSDTALRSKLQELGSMTQMQDPPLLRLENESYQICLTFLQNLILDKPPLAKEAEVESRLVELCEEVLQFYIETST 1687 (1780)
T ss_pred HHHHhcCcHHHHHHHHHhhhcccCCCCchhhHhHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999989999999999999999999999999998889999999999999999999999998
Q ss_pred chhHHHHhhhhhhhhhccCCchhhhHhhhhhHHHHHHHHHhhcCChHHHHhHhhhhhHHHHHHHhcCCCchhHHHHHHHH
Q 000232 1732 QQKVKAVKQQRVVRWILPLGSARKEELAARTSLVVSALRVLSGLERETFKKYLSNIFPLLIDLVRSEHSSREVQLVLGTM 1811 (1822)
Q Consensus 1732 ~~~~~~~~~~~~~~~~~p~~~~~~r~i~aw~pvvv~iL~~l~~l~~~~F~~~~~~~ypll~~Li~~e~~~~e~r~~l~~~ 1811 (1822)
.+|.+..+.+..++|.+|+|++++||++||+||||+||+||++||+++|++|+|.||||+|+|++||+.++|||.||++|
T Consensus 1688 ~~~~~~~~~~~~~~~~~p~~~~~~r~i~a~~pv~v~il~~~~~l~~~~f~~~~~~~y~l~~~l~~~e~~~~e~r~~l~~~ 1767 (1780)
T PLN03076 1688 AGQDSEDSSSQQPRWLIPLGSGKRRELAARAPLVVATLQAVCGLGDSSFEKNLVRFFPLLAGLISCEHGSNEVQVALSDM 1767 (1780)
T ss_pred ccccccccccccccccccccchhHHHHHhcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 55422222334469999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred HHhhhhccccC
Q 000232 1812 FQSCIGPILLQ 1822 (1822)
Q Consensus 1812 ~~~rvg~~~~~ 1822 (1822)
|++||||++++
T Consensus 1768 ~~~rvg~~~~~ 1778 (1780)
T PLN03076 1768 LSSWVGPVLLQ 1778 (1780)
T ss_pred HHHHhhhhHhc
Confidence 98899999874
No 2
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-267 Score=2552.51 Aligned_cols=1511 Identities=47% Similarity=0.739 Sum_probs=1288.9
Q ss_pred ccchHHHHHHHHhhhhhcchhHHHHHHHHHHHhhccCCCCCcccccccCCCcCCcccchHHHHHhhcCCCcchHHHHHHH
Q 000232 15 RAVGPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSISDDPSQVSSSLFGLSQNDAGLVLHPIFLALDSAYPKVVEPALEC 94 (1822)
Q Consensus 15 ~~~~~~l~~i~~~k~~kk~~~l~~a~e~al~~lk~~~~~~~~~~~~~~~~~~~~~~~i~~P~~lAc~t~~~kl~~~ALdc 94 (1822)
+||.+++|||+++++||+|++|+++|+.+++++++.. +..+++|.+|.||++||+||++||+.+|+||
T Consensus 1 ~~v~~~~~ki~~~~~~~~~s~l~~~~~~~~~~~~~~~------------~~~~~~e~~~~p~~la~~t~~~ki~~~~~dc 68 (1514)
T KOG0929|consen 1 MFVSSALEKILADAEWRKHSKLKKACKSALEELKANG------------LSLAEAELYLLPFELACDTKSPKIVSPALDC 68 (1514)
T ss_pred CCccccHHHHhhhhhhhhHHHHHHHHHHHHHhhhccc------------CCCcchhhhhChHHhhcCCCCcchhccHHHH
Confidence 4789999999999999999999999999999999832 2347999999999999999999999999999
Q ss_pred HHHHHhccCCcCccCCCCCCCCCCCCCCCCcccccHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhccCCcccchhhHH
Q 000232 95 AFKLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVCGIGEEPIELSVLRVLLSAVRSPCLLIRGDCLL 174 (1822)
Q Consensus 95 lqKLia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~ii~tIc~c~~~td~~vqLqIlkaLl~~v~s~~~~vhg~~Ll 174 (1822)
+||||+|||++|++.++|+ | ...||++++++||.|+++.||.||||++|+||++|+|+++++||++|+
T Consensus 69 ~~kli~~~~l~g~~~~~~~-----~-------~~~l~~~~~~~vc~~~~~~~e~~elq~~k~lL~av~s~~~~i~~~~ll 136 (1514)
T KOG0929|consen 69 LQKLIAYGHLTGESNDSGG-----P-------EDLLIDKIIEAVCKCFDGLDESVELQVLKALLAAVTSQHIEIHGDSLL 136 (1514)
T ss_pred HHHHHHhhhccCCCCCCCC-----c-------chhHHHHHHhHhhhccCCCchhhhHhHHHHHHHHHhccceeecCcchH
Confidence 9999999999999988654 3 788999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHhhhccccCCCCcccchhhhhhhhhhccCCCCCccccccccccccc
Q 000232 175 LIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIVFTRVEEDSMNVPHFKTISVSELLEFADKSLNEGSSIHFCQNFINEVM 254 (1822)
Q Consensus 175 ~avr~cyni~l~Sk~~~nq~tA~atLtQmv~~VF~Rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (1822)
.+||||||||++| ++||+||+|||+||+++||.||+.+....+ .+.+++.+...+ +++..+++|+++++++
T Consensus 137 ~~vr~c~~iyl~s--~~nq~~ak~~L~qml~~vf~~~e~~~~~~~---~i~vs~~~~~~~----~~~s~~~~~~~i~~i~ 207 (1514)
T KOG0929|consen 137 LIVRTCYNIYLGS--PINQTTAKATLTQMLNIVFRRMEEDSSDES---QILVSELLRVSD----DPSSTEFVQQFIDSIM 207 (1514)
T ss_pred HHHHHHHHHHhcC--cccchHHHHHHHHHHHHHHHHhhhccCccc---ccccccccccCC----CcchhHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999998864322 233443322222 3344566777777766
Q ss_pred cCCCCCCchhhhhhhhccccCCCCCCCcccccccccccccccccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCcCCC
Q 000232 255 GASEGVFEPAMLQLKQNVSTKLPNGDTEVATEDEKGEVVKEGEKGEGEVAKEGENGGGRVPKEGETGEGQVPKEGEKGGG 334 (1822)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1822)
+...+.++. + ..++ +.++..++..+.
T Consensus 208 ~~~~~~~~~----~--------~~~~---~~~~~~~~~~~~--------------------------------------- 233 (1514)
T KOG0929|consen 208 EVLVASPED----V--------GLTE---MLDDNVNENSKT--------------------------------------- 233 (1514)
T ss_pred HhccCCccc----c--------cccc---cccccccccccc---------------------------------------
Confidence 665443100 0 0000 111110000000
Q ss_pred cccccCccCCCCCCCCCCcCCCcccccCccCccccccccCCCCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHhhccCCC
Q 000232 335 QALKEGEKGEGQAPKEGKEGEGQVLKDDEKGEDRVVKEGEKGEGGEGQGNGGAELGGESKIREDGFLLFKNICKLSMKFS 414 (1822)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Da~lvfr~LCkLs~k~~ 414 (1822)
.+... .++++...... ..+. +...++.+.+++|||+|||+|||||||+.
T Consensus 234 ---~~~~~--------------------~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~Daflvfr~Lckls~k~~ 282 (1514)
T KOG0929|consen 234 ---GDSLS--------------------LRDAESPESES-------ERDD-DSERSSQNKLQRDAFLVFRALCKLSMKPL 282 (1514)
T ss_pred ---Ccccc--------------------cCccccccccc-------ccCc-chhhccccHHHHhHHHHHHHHHHhhCCCC
Confidence 00000 00000000000 0000 11133457999999999999999999998
Q ss_pred CCCCCcchh-hhhhhHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHh
Q 000232 415 SQENPDDLI-LLRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSG 493 (1822)
Q Consensus 415 ~~~~~~d~~-~~rsk~lsLeLi~~iL~~~g~~f~~~~~~~~~ik~~Lc~~L~~n~~S~~~~vf~lsl~If~~L~~~~r~~ 493 (1822)
+.+ ..|.. .+|+|+++||||+.||+|+|++|+++..|+.+||||||.+|+||++|++++||+++|.||+.|+.+||.+
T Consensus 283 s~~-~~d~~s~~R~k~lsl~ll~~il~~~~~vf~s~~~fi~aikqyKOGalskn~vS~~~~vfe~s~~If~~lls~~r~~ 361 (1514)
T KOG0929|consen 283 SSE-ESDTQSHMRSKLLSLELLKSILENSGSVFRSNEHFIDAIKQYLCLALSKNSVSNVPMVFELSCTIFVSLLSNFRTH 361 (1514)
T ss_pred CCC-CCChHHHHhhhHHHHHHHHHHHhccchhhcCchhhHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHhcccc
Confidence 876 44432 2999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHhChhHHHHHHHhcCCCCCCccHHHHHHHHHHhhccCCCCCC
Q 000232 494 LKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTALGPPPGS 573 (1822)
Q Consensus 494 LK~Eievfl~~i~l~ile~~~~~~~~qk~~vLe~l~~l~~dp~~lveiy~NYDCd~~~~Nife~lv~~L~k~a~~~~~~~ 573 (1822)
+|.||||||++|+++++|..++ +++||+++|.++.++|.||+.+|++|+|||||.+.+||||++++.++|+|+|+ ++.
T Consensus 362 ~K~ei~vff~~i~~~ile~~t~-s~~qk~~~l~~~~~ic~d~q~~Vdi~vnydcd~~~~nifer~v~~ltk~a~g~-~~s 439 (1514)
T KOG0929|consen 362 LKAEIEVFFSEIFLRILENNTS-SFQQKMMVLRILTRICADPQTLVDIYVNYDCDSNSQNIFERLVNGLSKIAQGR-TGS 439 (1514)
T ss_pred cccccccchhhhhhhhhhcCCC-cccchhHHHHHHhhhcCCCccccccccCCccccCCccHHHHHHhhHHHhhcCC-Ccc
Confidence 9999999999999999999765 89999999999999999999999999999999999999999999999999994 456
Q ss_pred CCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCccccCCCCCCC
Q 000232 574 TTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIGETYLPKGSETDSSIDNNSIPNGEDGSVPDYEFHAEVNPEFSD 653 (1822)
Q Consensus 574 ~~~~~~~qe~~l~~~aL~~Lv~il~sl~~w~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (1822)
..+.+|.||..++..+++||+++++++..|.++++..+....+...... +.. +... ++ ..+...++
T Consensus 440 ~~~~~P~~~~~~~~~s~kcL~s~l~s~s~w~~~~~~~~~~~t~~~~~~~-~~~-----~~~~-----s~---~~~~~~~~ 505 (1514)
T KOG0929|consen 440 NLELSPVQELALRLKSLKCLVSILKSMSGWNDNQLNVEGVITGKKSSTT-PIE-----NELN-----SD---TQSNDADD 505 (1514)
T ss_pred ccCCCCchhhhHhhhhhhhHHHHHHhhhhhccccccCCCcccCccccCc-chh-----hhcc-----Cc---cccccccC
Confidence 6778899999999999999999999999999875544332222111100 000 0000 00 11223466
Q ss_pred hHHHHHHHHhHHHHHHHHhhhccCchhHHHHHHHcCCCCCCHHHHHHHHhcCCCCChhhHHhhhcccchhHHHHHHHHHH
Q 000232 654 AATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVD 733 (1822)
Q Consensus 654 ~~~~e~~k~~K~~l~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~ 733 (1822)
++++|..|.+|. +++|+.+||.+|++||+||+++|+++.+|.+||+||+.+.+|||+++|+|||+++++|++|||+|||
T Consensus 506 ~~q~e~~k~ek~-l~~~i~~fN~kpkkgi~~l~s~~~v~~sp~eiaeFL~~t~~l~kt~igdyLGe~d~~~~~VMhayVd 584 (1514)
T KOG0929|consen 506 PEQFEALKSEKQ-LQEGIQLFNGKPKKGISFLDSKGTVGTSPLEIAEFLIGTEGLSKTILGDYLGEDDDFNKAVMHAYVD 584 (1514)
T ss_pred hhhhhhhhhhcc-hHHHHHHhccCCccCchhhhhcCCCCCCHHHHHHHHHhccCCCHHHHHHHhcCCcchhHHHHHHHHH
Confidence 889999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCChhHHHHHHhccCcCCCchHHHHHHHHHHHHHHHHhCCC-CCCCccHHHHHHHHHHHhhhhhhhhhccCCCCH
Q 000232 734 SFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS-SFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTK 812 (1822)
Q Consensus 734 ~~df~~~~~~~aLR~fl~~frLpgE~q~Idri~e~Fa~~y~~~np~-~f~~~d~~y~laysiimLntdlhn~~vk~kmt~ 812 (1822)
.|||++++|++|||.||++||||||+|||||+|++||+|||+|||+ .|.|||+||+||||+||||||+|||+||+|||+
T Consensus 585 ~~dF~~~~~~~ALR~fL~~frLPgEaQkIDRiM~kFS~ry~~cNP~~lFssADtaYVLAfSlIMLnTDlHnp~vKnKMTK 664 (1514)
T KOG0929|consen 585 LFDFKNMSLVEALRKFLEGFRLPGEAQKIDRLMEKFSERYCKCNPGTLFSSADTAYVLAFSLIMLNTDLHNPNVKNKMTK 664 (1514)
T ss_pred hhCcCCCcHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhcCCCccCCCccchHHHHHHHHHHhccccCchhhccccH
Confidence 9999999999999999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCCchhhhhhhhhhhcccccchhhhhhhhHHHHHhhhhHHHH
Q 000232 813 ADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLI 892 (1822)
Q Consensus 813 ~~Fi~n~~gi~~~~dlp~~~L~~iY~~I~~~ei~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 892 (1822)
++||+||||||+|+|+|++||+.+||+|..+||+|+++...+...+.....+.+|.++..+...+++....++...
T Consensus 665 ~dFI~nnrgind~~dlp~e~L~~lYd~I~~~Eikm~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~~r~~~~~~s~~---- 740 (1514)
T KOG0929|consen 665 ADFIRNNRGINDGKDLPEEYLEALYDEIEYKEIKMKSDSLLPISSESSNLPKLLGLTGILNLRSNSRMSAIDMSAS---- 740 (1514)
T ss_pred HHHHHhcccccCcccChHHHHHHHHHHhhhccccccccccccccCCCCcchhhhccccccccchhhhhhHHHhhhh----
Confidence 9999999999999999999999999999999999999887766666666677788888777666665554444332
Q ss_pred HHHHHHhhhccCCCCCceeecCCchhhhhhHHHhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHHHhhCCchHHHH
Q 000232 893 RRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDA 972 (1822)
Q Consensus 893 ~~~~~~~~~~~~~~~~~f~~~~~~~~~r~Mfe~~W~piLaalS~~l~~s~D~~~~~~~L~g~~~~i~ia~~fgL~~~rDa 972 (1822)
+..++.++....+.||.++|.+|||+||+.+|+|++|||+.+|+.++|..+...|++||+.++||+|.|+|+..|||
T Consensus 741 ---~~~~~e~~s~~~s~~~~ath~~~Vr~m~e~~W~p~laafs~~~~~sdd~~~~n~cl~g~r~ai~ia~~f~~~~~rdA 817 (1514)
T KOG0929|consen 741 ---QSQLKEKGSLSESVFYSATHLISVRPMFESLWTPMLAAFSVGLQDSDDLEIANLCLDGFRLAISIASIFSMELGRDA 817 (1514)
T ss_pred ---HHHHHHhcccccccceecccceeeeccccccccchhhhhchhhhcCCccccccccccchhheeeehhhhcCCccccH
Confidence 23444455555789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCccccchhhHHHHHHHHHHHhhcCCchhhchHHHHHHHHHHHHHHHhcCCCCCCCccccccchhhhhh
Q 000232 973 FVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEK 1052 (1822)
Q Consensus 973 fv~sL~kfT~L~~~~~~~~KNv~alraLl~iA~~~Gn~L~~sW~~IL~~is~le~lqli~~g~~~d~~~~~~p~~~~~~~ 1052 (1822)
|+++|++||.++.+.+|+.||++++++++.||.++||++.++|.+|+.|++|+|++|+++.|++++..... .+..
T Consensus 818 fv~al~~ft~l~~~~e~k~kNi~aik~l~~ia~t~gn~l~~sW~~Il~cisqlE~~qli~sg~~~~~~~~~----~s~~- 892 (1514)
T KOG0929|consen 818 FVQALARFTNLHAPSEMKQKNIDAIKALLEIADTDGNKLFDSWLDILKCISQLEHTQLIGSGSPPNKLPFV----VSQR- 892 (1514)
T ss_pred HHHHHHHHHhccCHHHHhHhhHHHHHHHHHHhhcccchhHhHHHHHHHHHHHHHHHHHhcCCCCcccCcch----hhhc-
Confidence 99999999999999999999999999999999999999999999999999999999999999987532111 1100
Q ss_pred hcccCCCCCccccCCCCCCcchhhccCCcccccccCCCCCCCCCHHHHHHHhhhhhhhhhhhccchHHHHHhcccCCHHH
Q 000232 1053 TQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEA 1132 (1822)
Q Consensus 1053 ~~~~~~~~s~~~~~~~q~~~~~~~~~~~s~~st~~~~~~~~~lt~eei~~~~~~~~~l~~i~~~~id~lF~~S~~L~~~A 1132 (1822)
.. ... .+|+|+....++.........++..+ .++|+||++|..|+++|
T Consensus 893 ------------~~-~~~-------~~~~~~~~~~~s~~e~~~~~~s~s~v------------i~~d~Ift~S~~l~~ea 940 (1514)
T KOG0929|consen 893 ------------ED-YKK-------PGGSYDSSGDGSRIENVGEKSSVSVV------------IQMDRIFTSSQRLDSEA 940 (1514)
T ss_pred ------------hh-ccC-------CcccccccccccchhccccchhHHHH------------HHhhhhhcccccCCchH
Confidence 00 000 02333333322211111122222221 24999999999999999
Q ss_pred HHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 000232 1133 IVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAM 1212 (1822)
Q Consensus 1133 i~~Fv~ALc~vS~eEl~s~~~Pr~FsLqKLveVa~~Nm~Rirl~W~~IW~~L~~hf~~vg~h~n~~va~~AiDsLrqLs~ 1212 (1822)
|++||+|||+||++|+.++++||+|+|||+|||++|||.|||++|++||.++++||+.|||++|..|+.||+|+|||++|
T Consensus 941 Iv~FvkaLc~vs~~eL~s~~~PrlfslqK~VeIs~ynM~rIrl~ws~iw~vlg~~F~~vg~~~n~~vaifa~DslRQlsm 1020 (1514)
T KOG0929|consen 941 IVDFVKALCKVSMDELLSPSTPRLFSLQKLVEISYYNMNRIRLVWSRIWAVLGEFFVSVGCNSNESVAIFALDSLRQLSM 1020 (1514)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCeeecccceeeeccccccchhhHHHHHHHhhhhhhccccCCCCceEEEehhhhHHhhh
Confidence 99999999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHHHH
Q 000232 1213 KFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFE 1292 (1822)
Q Consensus 1213 kfLe~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~cl~qml~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~aF~ 1292 (1822)
||++++||++|+||++||+||+++|.++.+++|||+|++|+. +|++||||.||+|++.||.+.++.+|..+|+
T Consensus 1021 kfle~~el~~f~Fq~~fl~Pfe~im~~s~s~~Irelv~rC~~-------~nikSGWk~if~i~~~aA~~~~~~iv~~~fe 1093 (1514)
T KOG0929|consen 1021 KFLERSELDNFRFQKDFLRPFEHIMKRSSSAEIRELVVRCIS-------SNIKSGWKNIFKIFTTAASDSSKNIVELAFE 1093 (1514)
T ss_pred hhcchhhhhhhhHHHhhcCcchHHhhccCcchhHHHHHhhhh-------hhhhhhhhHHHHHHHHhhccchhhHHHHhHH
Confidence 999999999999999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred HHHHHHhcccCcccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCC
Q 000232 1293 TMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNA 1372 (1822)
Q Consensus 1293 ~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~ 1372 (1822)
++..|+++||..+.+++.++|.||+.||.+|+++....++|++||+++|.|+.+++++ ++.+...
T Consensus 1094 ~v~~i~~~~f~~~~~~~~~sf~d~v~cl~~F~~~~~~~~~s~~aI~~lr~ca~k~~e~--~~~~~~~------------- 1158 (1514)
T KOG0929|consen 1094 TVSKILQELFENVFPQEMDSFKDCVKCLEEFTKNLGFPDDSLNAIRFLRLCALKLAEG--VYNEKLK------------- 1158 (1514)
T ss_pred HHHHHHHHhhhhhchhhhHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhccc--cchhhcc-------------
Confidence 9999999999988765569999999999999999999999999999999999999876 1221100
Q ss_pred CcccCCCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhHHhhhhhccccCCCC
Q 000232 1373 PDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMP 1452 (1822)
Q Consensus 1373 ~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPlfd~l~~~~~~~ 1452 (1822)
+ ....+.+.|..+|+|+|++|++++.|+|++||++|+++||+|+..||+.|..+||+.+|+ +|||||+.++..++..
T Consensus 1159 -~-~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~-~~fpIF~~~~~~~~~~ 1235 (1514)
T KOG0929|consen 1159 -V-GKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFR-ILFPIFDNVKLDEDES 1235 (1514)
T ss_pred -c-ccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH-heeecccccCcccchh
Confidence 0 001145678999999999999999999999999999999999999999999999999999 9999999998755432
Q ss_pred CCCCCCCCCCCCCCccccccHHHhHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHhh
Q 000232 1453 DKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGEL 1532 (1822)
Q Consensus 1453 ~~~~~~~~~~~~~~~~~~~W~~eT~~laL~~lv~lf~~yf~~l~~~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll~~~ 1532 (1822)
+..+|+.|||++||+.+|+||++||+.++.+|++++.+|.+||+|+|+++|++|++||++|+.+|
T Consensus 1236 ---------------~~~eW~~tT~~~Al~~~v~lf~~~~~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n 1300 (1514)
T KOG0929|consen 1236 ---------------EKDEWLSTTCNHALQALVDLFTQFFKQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSN 1300 (1514)
T ss_pred ---------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhc
Confidence 33449999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccchhHHhhcccCCCCCCCCCCcccccccCCCCCCCCCCCchhhhhhhhhHHHhhhhH
Q 000232 1533 GSRLSQDEWREILLALKETTASTLPSFVKVLRTMNDIEIPNTSQSYADMEMDSDHGSINDNIDEDNLQTAAYVVSRMKSH 1612 (1822)
Q Consensus 1533 ~~~f~~~~W~~i~~~l~~~f~~T~p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1612 (1822)
|.+|++++|+++++++.++|++|+|+++..|+.++|+. . +. ++..+...+...+.....|..
T Consensus 1301 ~~~fse~~Wde~~~~~~e~~~~T~p~~l~~~~~~~~~~---~-----~~----------~e~~~~~~~~v~~~~~~~k~~ 1362 (1514)
T KOG0929|consen 1301 GEKFSEEDWDEICNCILEAFKTTLPHELLTWRTMSDIS---S-----EQ----------NELSQTISNIVFYPATESKED 1362 (1514)
T ss_pred ccccCHhhHHHHHHHHHHHHHhcCcHHHhcccccCCCc---c-----cc----------ccccccccccccccccchHHH
Confidence 99999999999999999999999999999987665553 0 00 111111111122222333332
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhhcccCCCCCchhhhhhHHHHHH
Q 000232 1613 ITLQLLSVQVAANLYKLHLRLLSTTNVKILLDIFSSIASHAHELNSELVLQKKLQRVCLVLELSDPPMVHFENESYQTYL 1692 (1822)
Q Consensus 1613 cvlQLlLIq~~~el~~~~~~~l~~~~l~~L~~~L~~s~~fA~~FN~d~~LR~~L~k~g~~~~~~~PnLLkQEt~S~~~~l 1692 (1822)
.++| +++.+||++|+++|+|||.+||+|||+||+|++||.+||+||..++ +|||||||++|+++||
T Consensus 1363 -----------~~~~-~~~~~l~~~~~~~l~d~l~~s~~fa~~fN~d~~lR~~l~~~~~~~~--~pnLL~qE~~s~~~~l 1428 (1514)
T KOG0929|consen 1363 -----------TDLL-GMYTSLSAQHLLKLLDILSESHEFAKQFNSDYELRTKLWRAGKGSQ--KPNLLRQETSSLACYL 1428 (1514)
T ss_pred -----------HHHH-HHHhhCCHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcccCC--CcchhhHHHHHHHHHH
Confidence 3444 8999999999999999999999999999999999999999995544 8999999999999999
Q ss_pred HHHHHHhcCCCCchhHHhHHHHHHHHHHHHHHHHHccCcchhHHHHhhhhhhhhhccCCchhhhHhhhhhHHHHHHHHHh
Q 000232 1693 NFLRDSLTGNPSASEELNIESHLVEACEMILQMYLNCTGQQKVKAVKQQRVVRWILPLGSARKEELAARTSLVVSALRVL 1772 (1822)
Q Consensus 1693 ~iLf~m~~d~~~~~~~~~ie~~L~~lc~~il~~Y~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~aw~pvvv~iL~~l 1772 (1822)
.|||+||.|+++.+ ++|++||+++|.+||++|+++..+++ +|| +
T Consensus 1429 ~~lf~~~~~~~~~~--~~i~~~l~~~c~~~l~~y~~~~~~~~------------------------~a~----------~ 1472 (1514)
T KOG0929|consen 1429 DILFRLLKDDPRVS--EEIESRLVTVCSEVLKGYLSLTSETH------------------------EAW----------L 1472 (1514)
T ss_pred HHHHHHhccCcccc--HHHHHHHHHHHHHHHHHHHhccccch------------------------hhh----------c
Confidence 99999999999876 99999999999999999999999888 788 2
Q ss_pred hcCChHHHHhHhhhhhHHHHHHHhcCCCchhHHHHHHHHHHhhh
Q 000232 1773 SGLERETFKKYLSNIFPLLIDLVRSEHSSREVQLVLGTMFQSCI 1816 (1822)
Q Consensus 1773 ~~l~~~~F~~~~~~~ypll~~Li~~e~~~~e~r~~l~~~~~~rv 1816 (1822)
.. +++.|..|.|.||++||+++.++. ++++|.+++.||. ||
T Consensus 1473 ~~-~~~~~~~~~~~~~~~l~~~~~~~~-~~~~r~~~~~~~l-r~ 1513 (1514)
T KOG0929|consen 1473 TP-SDEEFSARAPLYYALLCAMCAFDL-DPELRHLLRFFFL-RV 1513 (1514)
T ss_pred CC-cHHHHhccCchHHHHHHHHHHcCC-cHHHHHHHHHhhh-hc
Confidence 22 999999999999999999999995 7799999999998 76
No 3
>KOG0928 consensus Pattern-formation protein/guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-123 Score=1173.69 Aligned_cols=1219 Identities=24% Similarity=0.348 Sum_probs=888.2
Q ss_pred CCcCCcccchHHHHHhhcCCCc--chHHHHHHHHHHHHhccCCcCccCCCCCCCCCCCCCCCCcccccHHHHHHHHHHhh
Q 000232 64 LSQNDAGLVLHPIFLALDSAYP--KVVEPALECAFKLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKV 141 (1822)
Q Consensus 64 ~~~~~~~~i~~P~~lAc~t~~~--kl~~~ALdclqKLia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~ii~tIc~c 141 (1822)
++.++|-.|+.||..-.+|.+. .|+..||+.++|.+.|+.+..+.+. ...-...++++|..|
T Consensus 62 l~~idp~~~L~PFL~vI~s~~~~g~iTslALssv~Kflt~~iid~~s~n----------------~~~am~~~v~Avthc 125 (1386)
T KOG0928|consen 62 LDTIDPLTYLSPFLEVIKSDETTGPITSLALSSVLKFLTLNIIDESSPN----------------AADAMRNIVDAVTHC 125 (1386)
T ss_pred hccCChHhHHhHHHHHHhcccCCccHHHHHHHHHHHHheeeecCccCcc----------------HHHHHHHHHHHHHhe
Confidence 4558999999999999887764 8999999999999999999887753 233467899999999
Q ss_pred -hC----CCCCchHHHHHHHHHHHhccCC-cccchhhHHHHHHHHHHhhc-cCCCchhhHHHHHHHHHHHHHHHHhhhcc
Q 000232 142 -CG----IGEEPIELSVLRVLLSAVRSPC-LLIRGDCLLLIVRTCYNVYL-GGSSGTNQICAKSVLAQIMVIVFTRVEED 214 (1822)
Q Consensus 142 -~~----~td~~vqLqIlkaLl~~v~s~~-~~vhg~~Ll~avr~cyni~l-~Sk~~~nq~tA~atLtQmv~~VF~Rv~~~ 214 (1822)
++ ..||.|-|+|||.|.+++.++. ..+..+.+...|-||+++-- ..++.+-|.+|+.|+.-|+--||.|...-
T Consensus 126 RFe~td~~Sde~VllkilqvLr~lm~sp~~~lLSnq~Ic~ivqTcl~v~~q~~lselLr~~Ae~Tm~~~~~~IFsrLk~~ 205 (1386)
T KOG0928|consen 126 RFEGTDPASDEVVLLKILQVLRSLMDSPAGALLSNQIICDIVQTCLRVVCQSRLSELLRKSAEHTMHDLTQLIFSRLKYI 205 (1386)
T ss_pred eeeccCccchhHHHHHHHHHHHHHHhCchhhhcchhHHHHHHHHHHHHHHHHhHHHHhhcchhhhHHHHHHHHHHhCccc
Confidence 43 4578899999999999999865 46688899999999999854 45899999999999999999999999754
Q ss_pred ccCCCCcccchhhhhhhhhhccCCCCCccccccccccccccCCCCCCchhhhhhhhccccCCCCCCCccccccccccccc
Q 000232 215 SMNVPHFKTISVSELLEFADKSLNEGSSIHFCQNFINEVMGASEGVFEPAMLQLKQNVSTKLPNGDTEVATEDEKGEVVK 294 (1822)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (1822)
... .+.+..-..++ .|+ ...+...- ...+
T Consensus 206 ~~~-------~~~~~~~~~es----------~~~-------~~~~~~~i-------------~~k~-------------- 234 (1386)
T KOG0928|consen 206 EPP-------YVNEMYINDES----------YQG-------NVLKDDFI-------------GTKR-------------- 234 (1386)
T ss_pred ccc-------ccchhhcchHh----------hhc-------cccccccc-------------Cccc--------------
Confidence 310 00100000000 000 00000000 0000
Q ss_pred ccccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCcCCCcccccCccCCCCCCCCCCcCCCcccccCccCccccccccC
Q 000232 295 EGEKGEGEVAKEGENGGGRVPKEGETGEGQVPKEGEKGGGQALKEGEKGEGQAPKEGKEGEGQVLKDDEKGEDRVVKEGE 374 (1822)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (1822)
.+.|+....+..+. ++++..... .+.+.++++ .+....++. .
T Consensus 235 -~en~e~~~~~~~a~----------~~~~~~~~~-~~~~v~~~~----------------------~~~~~~~e~-a--- 276 (1386)
T KOG0928|consen 235 -VENGEISSEDESAT----------FDDGSISEK-FEVPVQQVD----------------------REQETDEEN-A--- 276 (1386)
T ss_pred -CCCCCccCcccccc----------ccccccccc-ccCCccccc----------------------cccCChhhh-h---
Confidence 00000000000000 000000000 000000000 000000000 0
Q ss_pred CCCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHhhccCCCCCCCCcchhhhhhhHHHHHHHHHHHHcCcccccCcHHHHH
Q 000232 375 KGEGGEGQGNGGAELGGESKIREDGFLLFKNICKLSMKFSSQENPDDLILLRGKILSLELLKVVTDNGGPVWLSNARFLI 454 (1822)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~Da~lvfr~LCkLs~k~~~~~~~~d~~~~rsk~lsLeLi~~iL~~~g~~f~~~~~~~~ 454 (1822)
+..+..+ ..++-...+|- |..||+|.+-. +... +.-...+++|.||++.++-+|+.|+.||+|+.
T Consensus 277 -----~~~~~~~--~~ygip~~~~~---~h~l~sl~~~~----n~~~-~~es~~~~~l~lin~aie~~g~~i~~~prll~ 341 (1386)
T KOG0928|consen 277 -----EAMAAMD--ENYGIPVMKDI---FHFLLSLLNVT----NTVA-HDESVRSFALVLINSAIELGGDCIREHPRLLR 341 (1386)
T ss_pred -----hHhhccc--ccCCCceeccc---hhhhhhhcccc----cccc-chhhhhHHHHHHHHhhHhhcchHHHHhhHHHH
Confidence 0000111 11222334554 55577776532 2111 12224699999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-----ccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q 000232 455 AIKQFLCLSLLKNS-----ALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLE 529 (1822)
Q Consensus 455 ~ik~~Lc~~L~~n~-----~S~~~~vf~lsl~If~~L~~~~r~~LK~Eievfl~~i~l~ile~~~~~~~~qk~~vLe~l~ 529 (1822)
.|++.+..+++..+ .|-.+.++++-+.+..+|...+|.++|.++|.||+.+..++......|+++|+.++||.+.
T Consensus 342 liqd~~fk~l~~~~~~~~k~s~~~~~Lql~~s~vl~l~~~lr~~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ale~lv 421 (1386)
T KOG0928|consen 342 LIQDPLFKHLIEFLQIPTKMSLERLVLQLFCSLVLNLYLALREQLKLQLEAFFSILLLRGTAEEYGPPYEQQEVALEALV 421 (1386)
T ss_pred HhccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHH
Confidence 99999999999988 6778889999999999999999999999999999999999988777789999999999999
Q ss_pred HHHhChhHHHHHHHhcCCCCCCccHHHHHHHHHHhhccCCCCCCCCCCCchhhHHHHHhHHHHHHHHHHHHHHHHHhhhc
Q 000232 530 KISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVSIIRSMGTWMDQQLR 609 (1822)
Q Consensus 530 ~l~~dp~~lveiy~NYDCd~~~~Nife~lv~~L~k~a~~~~~~~~~~~~~~qe~~l~~~aL~~Lv~il~sl~~w~~~~~~ 609 (1822)
.+|+.|.+++++|+|||||++|+||||++++.|+|.|++.....++...++ +.|+.++ +|.+.+.....
T Consensus 422 ~~~R~p~F~~e~yvNfDCd~~csnlfedl~k~LtknafP~sg~~tt~~i~~-------l~l~~v~----~l~e~~~~~l~ 490 (1386)
T KOG0928|consen 422 LLCRIPSFLTEMYVNFDCDLYCSNLFEDLIKLLTKNAFPVSGPLTTASILP-------LDLEGVL----GLAENMIDELQ 490 (1386)
T ss_pred HHHhccHHHHHHHHhcCCchhhhhhHHHHHHHHHHccCCcccccccccccc-------hHHHHHH----HHHHHHHhhcc
Confidence 999999999999999999999999999999999999997543322221121 1233344 44443332221
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCccccCCCCCCChHHHHHHHHhHHHHHHHHhhhccCchhHHHHHHHcC
Q 000232 610 IGETYLPKGSETDSSIDNNSIPNGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSK 689 (1822)
Q Consensus 610 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~K~~l~~~~~~Fn~~p~~gi~~l~~~~ 689 (1822)
..+. ...+.... +.+..+-+.+.+|+++..|++.||+||||||+||+++|
T Consensus 491 ~~d~----------------------------~ef~~~k~--e~~v~~iR~rk~K~~li~gae~FNe~pkKGi~fL~ek~ 540 (1386)
T KOG0928|consen 491 DSDR----------------------------EEFWTDKC--EVWVLFIRSRKRKRELILGAELFNEDPKKGIEFLQEKG 540 (1386)
T ss_pred ccCc----------------------------CccccCCc--chhhhhhccchhhHHHHHHHHHhccChhhHHHHHHhcC
Confidence 1100 00000000 11122223333699999999999999999999999999
Q ss_pred CCC--CCHHHHHHHHhcCCCCChhhHHhhhcccchhHHHHHHHHHHhcCCCCCChhHHHHHHhccCcCCCchHHHHHHHH
Q 000232 690 KVG--DSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIME 767 (1822)
Q Consensus 690 ~i~--~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~~df~~~~~~~aLR~fl~~frLpgE~q~Idri~e 767 (1822)
+|+ .+|..+|.||+++++|||++||+|||++++ .+||++|++.|||+||++|+|||.||++||||||+|+|+|+||
T Consensus 541 li~~~~d~~~~~~ffr~n~rLdKk~iGdfLc~~k~--~~vLn~Fi~tFdF~gmrlDeALRl~L~sFRLPGESQ~IeRVlE 618 (1386)
T KOG0928|consen 541 LIPSDLDPTSVAEFFRYNPRLDKKTIGDFLCDPKN--VSVLNEFIGTFDFQGMRLDEALRLFLESFRLPGESQKIERVLE 618 (1386)
T ss_pred ccCCCCChHHHHHHHHhCccccHHHHHHHhcCcch--HHHHHHHHHhcCcCCCcHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999 489999999999999999999999999998 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC-CCCCCccHHHHHHHHHHHhhhhhhhhhccCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHhcccc
Q 000232 768 KFAERYCKCNP-SSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIK 846 (1822)
Q Consensus 768 ~Fa~~y~~~np-~~f~~~d~~y~laysiimLntdlhn~~vk~kmt~~~Fi~n~~gi~~~~dlp~~~L~~iY~~I~~~ei~ 846 (1822)
+||+|||++|+ +.|+++|+||+|||||||||||+||||||+|||++||+||+||+|+|+|||++||++||++|+.+||+
T Consensus 619 AFSery~~~n~~~~~~~kDavFvLsYSIIMLNTDqHNpqVK~~MT~dDf~rNlrg~n~g~DFpreyLseiY~SIk~~EIv 698 (1386)
T KOG0928|consen 619 AFSERYYSDNSPDIFADKDAVFVLSYSIIMLNTDQHNPQVKRKMTFDDFIRNLRGINGGKDFPREYLSEIYQSIKTNEIV 698 (1386)
T ss_pred HHHHHHHhcCCCccccccchhhhhhhhhheecccccChhhhccCCHHHHhhhcccccCCCCCCHHHHHHHHHHHhhccee
Confidence 99999999887 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhhhhhhhhhhcccccchhhhhhhhHHHHHhhhhHHHHHHHHHHhhhccCCCCCceeecCCchhhhhhHHHh
Q 000232 847 MNADSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVC 926 (1822)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~r~Mfe~~ 926 (1822)
||++|++...+.+..|+. ++ .+++..++.+.......+.|.||..+
T Consensus 699 mPee~hG~~~~~~~~W~~--------------------------L~--------~~sktt~~~~~~~~~~~~drdlF~~v 744 (1386)
T KOG0928|consen 699 MPEEHHGTEEMFEYRWIN--------------------------LI--------SRSKTTEPFILRDFTLVYDRDLFAMV 744 (1386)
T ss_pred cccccCCchhhhHHHHHH--------------------------HH--------hcccccCceeeccchhhhhHHHHHHH
Confidence 999988765543322211 11 12444456666666778899999999
Q ss_pred hHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccCCCccc----c------chhhHHH
Q 000232 927 WGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAAD----M------KQKNVDA 996 (1822)
Q Consensus 927 W~piLaalS~~l~~s~D~~~~~~~L~g~~~~i~ia~~fgL~~~rDafv~sL~kfT~L~~~~~----~------~~KNv~a 996 (1822)
|+|++||++++|+.++++.+.++|++|+++|+.|++++|+.+..|..+.+|||||.|.++.. + ..|-..|
T Consensus 745 ~gp~iaals~vFd~a~~d~I~~r~i~g~~k~a~isA~y~l~dv~ddli~slCkfTtL~~~s~~~eel~~~fged~ka~~A 824 (1386)
T KOG0928|consen 745 WGPIIAALSYVFDVAESDTILQRCIDGIRKCAKISAYYGLKDVFDDLIISLCKFTTLLNPSSTPEELVLAFGEDTKARMA 824 (1386)
T ss_pred ccchHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccccCCccCchHHHHHhcccchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999987642 1 2366678
Q ss_pred HHHHHHHHhhcCCchhhchHHHHHHHHHHHHHHHhcCCCCCCCccccccchhhhhhhcccCCCCCccccCCCCC-Ccchh
Q 000232 997 VKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQN-PSVMA 1075 (1822)
Q Consensus 997 lraLl~iA~~~Gn~L~~sW~~IL~~is~le~lqli~~g~~~d~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~q~-~~~~~ 1075 (1822)
..+++-+++..|++++.+|+.|++|+.++.+++++...+-++..+.+- . .+-...| .+.+....+ +...+
T Consensus 825 t~tvf~~~n~~Gd~i~~gw~nI~~~~l~l~r~~llp~~~~e~~~~~~~--~------~~~~~~~-~~~~~~~~~k~~~ss 895 (1386)
T KOG0928|consen 825 TLTVFFGANKFGDLIRVGWRNIVECLLQLNRLVLLPLRLIEDLKNEPE--L------LKLNKLP-VPQQEISINKPRKSS 895 (1386)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHhhccCcHhhhhhhhcCcc--c------cccCCCC-CCccccCcccccccc
Confidence 999999999999999999999999999999999988765443222210 0 0000000 000000000 00000
Q ss_pred h--ccCCcccccccCCCCCCCCCHHHHHHHhhhhhhhhhhhccchHHHHHhcccCCHHHHHHHHHHHHHhchhhcCCCCC
Q 000232 1076 V--VRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSPTD 1153 (1822)
Q Consensus 1076 ~--~~~~s~~st~~~~~~~~~lt~eei~~~~~~~~~l~~i~~~~id~lF~~S~~L~~~Ai~~Fv~ALc~vS~eEl~s~~~ 1153 (1822)
. .+.++|.+.. +...++.+|+++++....+ .+||.+|.++++|++|+.|..+++.+++++|...+...-...++
T Consensus 896 ~Lls~fs~~Ls~d-~e~~~~~Ptee~l~~~~~a---~~cIk~c~i~~if~~s~~l~~~~l~~Ll~Sli~~s~~~s~~de~ 971 (1386)
T KOG0928|consen 896 GLLSRFSSYLSGD-EEEERPCPTEEELSASKKA---LECIKECHIDQIFTKSKFLQAKSLLTLLKSLIAASNDLSMEDEE 971 (1386)
T ss_pred hHHHHHHHhcCCc-ccccCCCCcHHHHhhhHHH---hhHHHhcCHHHHhhhcccccHHHHHHHHHHHHHhcCCccCcccc
Confidence 0 1112333322 2334567899999877655 78999999999999999999999999999999998763111246
Q ss_pred CccchHHHHHHHHhhcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhchhhhhchhhhhhhHHHH
Q 000232 1154 PRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPF 1233 (1822)
Q Consensus 1154 Pr~FsLqKLveVa~~Nm~Rirl~W~~IW~~L~~hf~~vg~h~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPf 1233 (1822)
.+.|++++|+.|...|.+||.+.|..+..++...|+..-..+ .-....|+-.|.+++.|.+..+| ..-.++++++
T Consensus 972 s~~F~lElli~I~l~nrdri~l~w~~~~e~ll~~~~~~~~~~-~~lvek~v~gl~rv~~rll~yk~----~l~d~l~~sl 1046 (1386)
T KOG0928|consen 972 SAVFCLELLIAITLSNRDRILLSWFAVYEHLLGLLIQTLMGS-PLLVEKAVSGLLRVVNRLLPYKE----FLSDELLDSL 1046 (1386)
T ss_pred hHHHHHHHHHHHHhccccceEeeehhhHHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHHHhhhhh----hhhHHHhhhH
Confidence 789999999999999999999999999999888777653322 23455666677788999998544 2345788898
Q ss_pred HHHHhccC--ChHHHHHHHHHHHHHHHhhcccccc--CcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCcccccc
Q 000232 1234 VIIMQKSG--SAEIRELIIRCISQMVLSRVSNVKS--GWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETE 1309 (1822)
Q Consensus 1234 e~im~~~~--~~eIre~IL~cl~qml~~~~~~IkS--GWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~ 1309 (1822)
..+....+ ....-++|---+.+++.++..++++ ||+++|..|..++..+ +.-..+|..+...+.|-.+..
T Consensus 1047 ~~ll~L~~ki~d~~~~ki~i~~~~lv~~n~~~v~~~~~w~~~~slL~~~~~h~--~a~~~~~~~~l~~m~e~~hl~---- 1120 (1386)
T KOG0928|consen 1047 RILLKLDPKILDAFLDKIAIFVSKLVKANAANVHSKDGWALLFSLLELTARHP--EADFLKFYRLLSKMSEASHLT---- 1120 (1386)
T ss_pred HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhcCC--chhHHHHHHHHHHhhccccCC----
Confidence 88765543 3567788888899999999988866 9999999999998753 344555665555555654443
Q ss_pred cchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCC-CCcccchhhH
Q 000232 1310 STTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSF-SDKDDNSSFW 1388 (1822)
Q Consensus 1310 ~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~lW 1388 (1822)
++.|..||+|...|+..+.. .+..--..-|.++..+... .++... .+....++... .........|
T Consensus 1121 ~~~fe~~v~~~~~fve~~~~------~~~~~l~~lde~s~sg~~~-~kw~~~------~~~~~~~~~~~~~~~~~~~~~w 1187 (1386)
T KOG0928|consen 1121 PDNFELYVDCGSTFVEARVG------QIMRSLSLLDEMSSSGEVL-DKWEIE------AKNATESGDESKKSNNYRSEIW 1187 (1386)
T ss_pred hHHHHHHHHHHHHHHHHHHH------HHHHhcchhhhhcccccch-hHHHHH------HhhhhcccccccccchhhHHHH
Confidence 58999999999999855321 0100001112222211100 000000 00000011101 1122334599
Q ss_pred HHHHHHHHhhccCChHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhHHhhhhhccccCCCCCCCCCCCCCCCCCCcc
Q 000232 1389 VPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSE 1468 (1822)
Q Consensus 1389 ~pLL~~Ls~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~~~ 1468 (1822)
.+|+..+.++|.++|.+||+.||+.+.+++-.-+..+.+..|..||+.|+||+++.+....... .+
T Consensus 1188 l~l~~~~~kl~L~~r~~vRn~aL~~lqr~~~~~~q~l~~~~~~~Cf~~vlfpll~~l~~~l~~~--------------~~ 1253 (1386)
T KOG0928|consen 1188 LILLQIIRKLCLLSRRGVRNAALTKLQRIIGALDQGLAHSYWNPCFDLVLFPLLTDLLELLSDA--------------SE 1253 (1386)
T ss_pred HHHHHHhhhcchhhhhhhHHHHHHHHHHHHHhhhcccchHHHHHHHHHHhHHHHHHHHHHhccc--------------cc
Confidence 9999999999999999999999999999877888999999999999999999999987633221 11
Q ss_pred ccccHHHhHHHHHHHHHHHHHhhhchhh------hhHHHHHHHHHHhhcCCC-----cchhHHHHHHHHHHHH
Q 000232 1469 GSTWDSETAAIGAECLVDIFICFFDVVR------SQLPGVVSILTGFIRSPI-----QGPASTGVAALLHLAG 1530 (1822)
Q Consensus 1469 ~~~W~~eT~~laL~~lv~lf~~yf~~l~------~~w~~lL~lL~~~i~~~~-----~~ia~~g~~~L~~Ll~ 1530 (1822)
...-|..|..++.+.++++|.+|+..+. .+|.++++++..|+.-.. +.+..+..+.+++.+.
T Consensus 1254 ~~~~me~t~~~~~~Ll~k~~L~~lq~ls~~~~f~~Lwl~~ld~m~~l~~~~~~e~~~~~l~e~~pe~l~~~~~ 1326 (1386)
T KOG0928|consen 1254 KGNEMEVTLLLATKLLSKVFLQELQDLSSLSMFSTLWLGVLDRMEKLMRGKTSEETSDKLNEIVPELLKNMLL 1326 (1386)
T ss_pred ccchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhhhhhhhhhhhh
Confidence 1113578999999999999999997664 479999999999998653 6778888888887776
No 4
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=100.00 E-value=6.4e-89 Score=883.43 Aligned_cols=991 Identities=25% Similarity=0.347 Sum_probs=753.0
Q ss_pred HHHHHhhccCCCCCCCCcc--hhhhhhhHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Q 000232 403 FKNICKLSMKFSSQENPDD--LILLRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQC 480 (1822)
Q Consensus 403 fr~LCkLs~k~~~~~~~~d--~~~~rsk~lsLeLi~~iL~~~g~~f~~~~~~~~~ik~~Lc~~L~~n~~S~~~~vf~lsl 480 (1822)
+|.+|++..+..+..+..+ .+.+|+|+.+|++++++|..+. .|+.++++|+|..+.++++|+..|||+.+|
T Consensus 1 ~~~~~~~~i~~~~~~~~~n~~s~~~r~~l~~l~~~~~~l~~~~-------~l~~~~~~~~~l~~~~~a~s~~~~v~~v~~ 73 (1024)
T COG5307 1 KRVLLVSQISNAPLKNSSNAPSQAVRSKLYSLPVSYSILRDFK-------LLLDLLFPYLRLKLSLSARSPLLPVFEVGL 73 (1024)
T ss_pred CchHHHHHHhhccccccccchhhhcccccccccchHHHhccch-------HHHHHhcchhhhhhhhcccccchhhhhhhH
Confidence 4678888877554443333 4799999999999999998776 799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHhChhHHHHHHHhcCCCCC-CccHHHHHH
Q 000232 481 SIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDCDVD-SPNIFERIV 559 (1822)
Q Consensus 481 ~If~~L~~~~r~~LK~Eievfl~~i~l~ile~~~~~~~~qk~~vLe~l~~l~~dp~~lveiy~NYDCd~~-~~Nife~lv 559 (1822)
.|+|.++..++.++|.|+++||..+|+++++.. +++..||..-|-..++.|..|+ ++.|+||||... ..|++++..
T Consensus 74 ~i~~~~~~~~~~~f~~~~~~~f~s~~f~i~~~~-~~s~~q~~~~l~~~~~~~~~~r--l~~~i~~d~~~~~~~~~~~~~~ 150 (1024)
T COG5307 74 EIIGLRLSNLPKLFKLESSVFFISIYFPISHTT-STSLQQKSSELSTSQVVILLSR--LERYINYDVGRGFMENITERTA 150 (1024)
T ss_pred HHHHHHHhhhhhhhhhccchHHHHHhhhhhccc-ccchhhhhHHhHhhhhhhcccc--hhhhcccccccccchhhhhccC
Confidence 999999999999999999999999999999986 5777899999999999999999 999999999987 899999999
Q ss_pred HHHHhhccCCCCCCC---------CC-C------CchhhHHHHHhHHHHHHHHHHHHHHHHHhhhccC-----CCCCCCC
Q 000232 560 NGLLKTALGPPPGST---------TS-L------SPAQDIAFRYESVKCLVSIIRSMGTWMDQQLRIG-----ETYLPKG 618 (1822)
Q Consensus 560 ~~L~k~a~~~~~~~~---------~~-~------~~~qe~~l~~~aL~~Lv~il~sl~~w~~~~~~~~-----~~~~~~~ 618 (1822)
..+++.+...|+-.. .+ . ...-++..+.....|.+.+++++.. +.+... ....+..
T Consensus 151 ~~~s~~~t~~p~~~~~~~~e~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~is~l~~l~~---~sl~~s~~~~~~~~~~~s 227 (1024)
T COG5307 151 FPLSRPSTNDPPETRSLIIEQLSILWISSPYFFLTLISDFQCDLDSSDCSISFLKGLTK---NSLVPSAYYTNKDVPPLS 227 (1024)
T ss_pred CccccccccCCCcchhhhhhhhhhcCCCCCccccccccchhhhhHHHHHHHHHHHHHhh---cccchhhhhcccCCCCcc
Confidence 999988755443210 00 0 0123566888999999999998862 211110 0000000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcC---ccccCCCCCCChHHHHHHHHhHHHHHHHHhhhccCchhHHHHHHHcCCCC-CC
Q 000232 619 SETDSSIDNNSIPNGEDGSVPDYE---FHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVG-DS 694 (1822)
Q Consensus 619 ~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~e~~k~~K~~l~~~~~~Fn~~p~~gi~~l~~~~~i~-~~ 694 (1822)
.|...+ +.+....... ..++.....+..-.....|.+|..+++++..||.+|++||..|.+.+++. ++
T Consensus 228 ~e~~~~--------~~~~~~~~~~~~~~d~~s~~~~~~~~~~~~~k~rkt~~~e~~~~fn~kp~~gi~~l~~~~~i~~d~ 299 (1024)
T COG5307 228 GEGLVS--------GSKSMVNSMKNSSRDSSSFVNSDSSIVNLGIKKRKTELIECIQAFNEKPKKGIASLIDSEFIDSDS 299 (1024)
T ss_pred cchhhh--------cCCcccccccccccChhhhccchHHHhhhccccchHHHHHHHHHhhhcCcccchhhcccccCCccc
Confidence 000000 0000000000 00000000011112223677899999999999999999999999999998 48
Q ss_pred HHHHHHHHhcCCC-CChhhHHhhhcccchhHHHHHHHHHHhcCCCCCChhHHHHHHhccCcCCCchHHHHHHHHHHHHHH
Q 000232 695 PEEVASFLKNTTG-LNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERY 773 (1822)
Q Consensus 695 p~~iA~fL~~~~~-L~k~~iGeyLg~~~~~~~~vl~~y~~~~df~~~~~~~aLR~fl~~frLpgE~q~Idri~e~Fa~~y 773 (1822)
+.++|.||..+.+ +||+.+|+|||++++.|..||++|+++|||+|++||+|||.||+.||||||+|+|||+||+||.+|
T Consensus 300 ~~sia~~L~~~~~~l~k~~lg~~L~~~~~kn~~vL~~Fi~~fdFk~~~i~eALR~lL~sfrLPgEaQqIDRile~FS~~Y 379 (1024)
T COG5307 300 HKSIAEILEGTEGRLDKKKLGLYLGTDDDKNNAVLREFISLFDFKGLDIDEALRKLLQSFRLPGEAQQIDRILEAFSDKY 379 (1024)
T ss_pred chHHHHHHHhccCcccHHHHHHHhcCCchhHHHHHHHHHHhcCcCCCcHHHHHHHHHHheecCchHHHHHHHHHHHHHHH
Confidence 9999999998876 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCc-cHHHHHHHHHHHhhhhhhhhhccCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCCC
Q 000232 774 CKCNPSSFTSA-DTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 852 (1822)
Q Consensus 774 ~~~np~~f~~~-d~~y~laysiimLntdlhn~~vk~kmt~~~Fi~n~~gi~~~~dlp~~~L~~iY~~I~~~ei~~~~~~~ 852 (1822)
|+|||+.|.++ |+||+||||+||||||+|||++|+|||++||++|++|+|+|+|||++||+++|+.|+++||+++++++
T Consensus 380 ~~~Np~~~~~~~D~vyiLafSlimLNTDlHNp~iK~kMT~~df~~N~~g~n~g~~~~~~~L~~~Y~~I~~kei~~~e~~~ 459 (1024)
T COG5307 380 YSDNPKKFSSKPDSVYILAFSLIMLNTDLHNPNIKAKMTFEDFSKNLRGENTGRDFPEEFLEEFYDNIKKKEIVLPEEHH 459 (1024)
T ss_pred HHhCcccccCccceeehhHHHHHHHhccccChhhhccccHHHHHhhhcccCCccccCHHHHHHHHHHHhhccccchhhcc
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CchhhhhhhhhhhcccccchhhhhhhhHHHHHhhhhHHHHHHHHHHhhhccCCCCCceeecCCchhhhhhHHHhhHHHHH
Q 000232 853 APESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLA 932 (1822)
Q Consensus 853 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~r~Mfe~~W~piLa 932 (1822)
....+....+.......+ .+. .+ +++......+.+.+|+.++++..|.++++
T Consensus 460 ~~~~~~~~~~~~~~ss~~--------------------~~~----~~----~rd~~~~~~~~~f~~v~~~~et~~~~i~~ 511 (1024)
T COG5307 460 SSETSPEDNWPSLDSSFT--------------------NIA----EF----GRDNQRVADATHFDHVGPIFETSLFPILM 511 (1024)
T ss_pred cccccccccchhhhhhhh--------------------hhh----hc----ccccccchhHhhhhhcchHHHHHHHHHHh
Confidence 544332221111100000 000 00 01111222457889999999999999999
Q ss_pred HHHhhhhccCcHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccCCCccccchhhHHHHHHHHHHHhhcCCchh
Q 000232 933 AFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHCAADMKQKNVDAVKAIISIAIEDGNHLQ 1012 (1822)
Q Consensus 933 alS~~l~~s~D~~~~~~~L~g~~~~i~ia~~fgL~~~rDafv~sL~kfT~L~~~~~~~~KNv~alraLl~iA~~~Gn~L~ 1012 (1822)
+++..+..++....+..|.+ +|+.|+++.+|++|+.+++++|.+++.. ...|+++.
T Consensus 512 s~s~~~~~s~~~~si~~~~~-------ia~~f~~n~p~~~~~~~~s~~t~l~~~S-----------------~~~~~~~~ 567 (1024)
T COG5307 512 SASDDLYSSDGVVSISKCTR-------IAANFDFNDPRDAFLESLSEFTTLINSS-----------------VSEGPYLF 567 (1024)
T ss_pred hhcchhcccccchHhhcccc-------hhhcceecchhHHHHHHhhccCCccccC-----------------cccccccc
Confidence 99999998887766655544 9999999999999999999999987644 67899999
Q ss_pred hchHHHHHHHHHHHHHHHhcCCCCCCCccccccchhhhhhhcccCCCCCccccCCCCCCcchhhccCCcccccccCCCCC
Q 000232 1013 EAWEHILTCLSRIEHLQLLGEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSP 1092 (1822)
Q Consensus 1013 ~sW~~IL~~is~le~lqli~~g~~~d~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~q~~~~~~~~~~~s~~st~~~~~~~ 1092 (1822)
..|.+++.++++++.++.++.|. .+. + +.+-..+...+. ..+...+++.. ... .......+...-...+
T Consensus 568 ~~~~d~~~~is~~~~~~~i~~~~-~~q--l--~~v~~~~~~~k~-~~~~i~~s~~~--~~i-~~~~~~~~~~~l~~~~-- 636 (1024)
T COG5307 568 IPSEDSLLSISVLELAARIGRGF-EDQ--L--SDVKLFRLRSKS-GNKEILSSSLL--SNI-ENKSLKLYLSSLIEDG-- 636 (1024)
T ss_pred CccccccchhhHHHHHHHhcccc-hhh--c--chhHHhHHhhcc-ccccccchhhh--hhh-hhhHhhhhhhhhcCCC--
Confidence 99999999999999999999886 221 1 111110000000 00000000000 000 0000000000000000
Q ss_pred CCCCHHHHHHHhhhhhhhhhhhccchHHHHHhcccCCH-HHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhccc
Q 000232 1093 GLVTPEQINHFIANLNLLDQIGNFELNHVFAHSQRLNS-EAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMN 1171 (1822)
Q Consensus 1093 ~~lt~eei~~~~~~~~~l~~i~~~~id~lF~~S~~L~~-~Ai~~Fv~ALc~vS~eEl~s~~~Pr~FsLqKLveVa~~Nm~ 1171 (1822)
....++. .......++. ...++++...+.++. .++++++++++... + ..| .+|+.++++++||.
T Consensus 637 ~~~~~~~-~~~~~~~~~~-----~~~~~i~~~~s~~s~~~~~l~~~k~~~~~d---~---~~~---~~q~~v~~s~~n~~ 701 (1024)
T COG5307 637 KHFSPSI-VKKLGSPELP-----KLNPDISSGKSKLSVWSAVLSVFKAILSSD---L---PSP---PLQKEVDISKKNVD 701 (1024)
T ss_pred ccccccc-cccccCcccc-----ccCcccccccccccccchHHHHHHHHHhcc---C---CCC---CcHHhhhHHhhhhh
Confidence 0011100 0000001111 236788999999998 89999999999921 1 123 89999999999999
Q ss_pred ccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHH
Q 000232 1172 RIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIR 1251 (1822)
Q Consensus 1172 Rirl~W~~IW~~L~~hf~~vg~h~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~ 1251 (1822)
||+.+ ..||+++...+..++++.+..+..+++++.+|+.++|++.+|+.+|.||..|+.|+++.+.......|++..+.
T Consensus 702 ~i~~~-~~i~~~~~~~~~~~~~~~~~~l~~s~~~~~~q~s~~f~~iee~~~~~f~~~~~~~~~~~~~~~~~~~v~~~~~~ 780 (1024)
T COG5307 702 IIKSE-SKISNVLFKNSEGLSPDLNKTLLESALDSKSQLSSRFLEIEELSDFGFQIALLLPFEYSVEVSLVVAVKELVIG 780 (1024)
T ss_pred hhhhh-hHHHhhcccchhhccccccccchhcccchhhhhccccCChhhhcchhHHHHHhccccccccccceeeeeeeehh
Confidence 99998 99999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred HHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCcccccccchHHHHHHHHHHHHcCCCCcc
Q 000232 1252 CISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSD 1331 (1822)
Q Consensus 1252 cl~qml~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~n 1331 (1822)
|..+++..+...+.+| +++|.++..+..... +...++.+.. .| .+.. ..++|.+.+.+-.....+..++.
T Consensus 781 ~~~~~~~~~~s~~~s~-~~i~~~~~~~~~~~~---~~~~~s~~~~--~e---~v~s-~~n~f~~~~~~~~~~~~~~~~~~ 850 (1024)
T COG5307 781 CSDNLLTEAASSIASG-KTIFEISAYEDLSST---LRYILSSLSN--DE---LVLS-QENLFIELLSSKNEGKQNDKNLE 850 (1024)
T ss_pred hHHHHHHHHHHhhhcc-ccceeeeecccccch---hhhHHHHhcc--hh---hhhC-hhhHHHHHHhhhHHHHHhccchh
Confidence 9999999999999999 999999877654321 4555554422 12 2221 13889999988888887777788
Q ss_pred ccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHHhh-ccCChHHHHHHH
Q 000232 1332 VCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKL-TSDSRSTIRKSS 1410 (1822)
Q Consensus 1332 iSL~AI~~L~~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l-~~d~R~eVR~~A 1410 (1822)
+.+.++++++..-..... |.-. . .....++...+.|+++|.++.++ ++-...++
T Consensus 851 ~~~~~~~~~~~~~~~~~~----wk~~---------------~--~~~~~~~~~~~~~~~~l~~~~~i~~~~~~l~~---- 905 (1024)
T COG5307 851 LRLHSVDYLRFLLPNVEN----WKNL---------------S--SVLSANSNFSKDIFSYLEKYVKIGSSALDLEN---- 905 (1024)
T ss_pred hhhccHHHHHHHhHHHHH----HHHH---------------H--HHHHhhhhhhHHHHHHHHHHHHhchhhhhHHH----
Confidence 888888887766554432 1000 0 00011122367899999999998 46677777
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHhHHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHHHHHHHHHh
Q 000232 1411 LEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFIC 1490 (1822)
Q Consensus 1411 lqtLF~iL~~~G~~f~~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~laL~~lv~lf~~ 1490 (1822)
|..+..++..|...+|+.+++.-++|++.......... .... ++...-.|+.++...|+...+.+|..
T Consensus 906 ----f~~~l~~~d~~~~~~~e~i~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~ 973 (1024)
T COG5307 906 ----FDQLLSLLDDFMSAFWEKISKKESFYIKSGASGPNSDK-------TNLD-NDEIELVWASTDLLAALKEFIELFNS 973 (1024)
T ss_pred ----HHHHHHhhhHHHHHHHHHHhhhhhheeccccccCcccc-------cccc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998875321110 0111 23566789999999999999999999
Q ss_pred hhchhhhhHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHh
Q 000232 1491 FFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKETTA 1553 (1822)
Q Consensus 1491 yf~~l~~~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll~~~~~~f~~~~W~~i~~~l~~~f~ 1553 (1822)
+|+.+. ++.+.+.++..| .+|.+++...+...|.+-.|+++...+.++|.
T Consensus 974 ~~e~~~-~~~~~~~l~~~c------------~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~ 1023 (1024)
T COG5307 974 IFEKLE-ILAGKLILLHQC------------LNNCDQLGLGAIETLEEILWNKIDVPTNELFY 1023 (1024)
T ss_pred HHHHHH-HHHHHHHHHHhh------------cCcHhhhhhhhHHHHhhhhHHHhhcccchhcc
Confidence 999999 999999999999 78999999999999999999999988777764
No 5
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7e-64 Score=631.36 Aligned_cols=1010 Identities=18% Similarity=0.197 Sum_probs=657.1
Q ss_pred CCcccccccchHHHHHHHHhhhhhcchhHHHHHHHHHHHhhccCCCCCcccccccCCCcCCcccchHHHHHhhcCCCcch
Q 000232 8 GGPSRCGRAVGPSLDKIIKNAAWRKHAHLVSSCKSVLDKLDSISDDPSQVSSSLFGLSQNDAGLVLHPIFLALDSAYPKV 87 (1822)
Q Consensus 8 ~~~~~~~~~~~~~l~~i~~~k~~kk~~~l~~a~e~al~~lk~~~~~~~~~~~~~~~~~~~~~~~i~~P~~lAc~t~~~kl 87 (1822)
|+-.....-+-..|+.|-++ .+|||+++|+|+++++..|+..... +....- .. ..-+.+..||.+||++|+.|+
T Consensus 6 ~~~~sl~~aL~adLrsLsse-ArkKnn~VK~aAdkSi~~Lr~isS~-s~ds~v---le-t~~edf~~PfllaC~sr~tRl 79 (1610)
T KOG1848|consen 6 PNIMSLVRALLADLRSLSSE-ARKKNNEVKLAADKSIQELRQISSA-SRDSDV---LE-TPNEDFLVPFLLACISRNTRL 79 (1610)
T ss_pred ccHHHHHHHHHHHHHHhhHH-HHhhchHHHHHHHhHHHHHHhhccc-cccccc---cc-cCCcccccceeeecccCcccc
Confidence 34444444555666776655 7778999999999999999988542 110000 00 116889999999999999999
Q ss_pred HHHHHHHHHHHHhccCCcCccCCCCCCCCCCCCCCCCcccccHHHHHHHHHHhhhCCCCCchHHHHHHHHHHHhccCCcc
Q 000232 88 VEPALECAFKLFSLGLARGEIEGESDNTNTTSTTNTNQKNFNIIYKLIEAICKVCGIGEEPIELSVLRVLLSAVRSPCLL 167 (1822)
Q Consensus 88 ~~~ALdclqKLia~~~l~~~~~~~~~~~~~~~~~~~~~~~~~li~~ii~tIc~c~~~td~~vqLqIlkaLl~~v~s~~~~ 167 (1822)
+++||.|||||+.|..++... ...+++.-+.+...- +.+||++||+.|-+++++-..
T Consensus 80 ~~ials~iQkL~~~dsleps~------------------~aeildn~L~a~~qa-----e~~QLrvLQtiPii~~syl~f 136 (1610)
T KOG1848|consen 80 FVIALSCIQKLGRHDSLEPSV------------------TAEILDNNLWAAAQA-----EWIQLRVLQTIPIIFFSYLTF 136 (1610)
T ss_pred eeeHHHHHHHHhccCCCCCcc------------------cHHHHHHHHHHHHHH-----HHHHHhhhccccceeeeceee
Confidence 999999999999999996643 223445555544321 779999999999999999988
Q ss_pred cchhhHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHhhhccccCCCCcccchhhhhhhhhhccCCCCCcccccc
Q 000232 168 IRGDCLLLIVRTCYNVYLGGSSGTNQICAKSVLAQIMVIVFTRVEEDSMNVPHFKTISVSELLEFADKSLNEGSSIHFCQ 247 (1822)
Q Consensus 168 vhg~~Ll~avr~cyni~l~Sk~~~nq~tA~atLtQmv~~VF~Rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (1822)
+.|..+++++++|||++ .+|++++-++|.||++|+|..||+||..++....
T Consensus 137 i~~p~l~kll~iCfnLl-~~knkvV~NaAaAtlrQlV~~vFdrv~ies~~~d---------------------------- 187 (1610)
T KOG1848|consen 137 ITGPPLLKLLIICFNLL-YQKNKVVFNAAAATLRQLVLLVFDRVPIESDAFD---------------------------- 187 (1610)
T ss_pred ccCcHHHHHHHHHHHHH-cCCCcceechhHHHHHHHHHHHHHhccccccccc----------------------------
Confidence 99999999999999987 8999999999999999999999999975421000
Q ss_pred ccccccccCCCCCCchhhhhhhhccccCCCCCCCcccccccccccccccccCCccccccCCCCCCCCCCCCCCCCCCCCC
Q 000232 248 NFINEVMGASEGVFEPAMLQLKQNVSTKLPNGDTEVATEDEKGEVVKEGEKGEGEVAKEGENGGGRVPKEGETGEGQVPK 327 (1822)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (1822)
+.- + .+ . +++|...+
T Consensus 188 -~~l-----------~---sl---------------------------~-----------~~s~t~sl------------ 202 (1610)
T KOG1848|consen 188 -FIL-----------P---SL---------------------------T-----------EASGTSSL------------ 202 (1610)
T ss_pred -ccc-----------h---hh---------------------------h-----------ccCCccch------------
Confidence 000 0 00 0 00000000
Q ss_pred CCCcCCCcccccCccCCCCCCCCCCcCCCcccccCccCccccccccCCCCCCCCCCCCCCCCCCchhhhhhHHHHHHHHH
Q 000232 328 EGEKGGGQALKEGEKGEGQAPKEGKEGEGQVLKDDEKGEDRVVKEGEKGEGGEGQGNGGAELGGESKIREDGFLLFKNIC 407 (1822)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Da~lvfr~LC 407 (1822)
++... + . ++.++|+.-.|..+|
T Consensus 203 ----------------------------------------~aa~~-------------~--~---~~l~~dI~~~~~~i~ 224 (1610)
T KOG1848|consen 203 ----------------------------------------EAALT-------------A--L---DPLQKDICVGFENIQ 224 (1610)
T ss_pred ----------------------------------------hhccc-------------c--c---chHHHhHhcchHHHH
Confidence 00000 1 1 588999999999999
Q ss_pred hhccCCCCCCCCcchhhhhhhHHHHHHHHHHHHcCcccccCcHHHH--HHHHHHHHHHHHHhcccCchHHHH--------
Q 000232 408 KLSMKFSSQENPDDLILLRGKILSLELLKVVTDNGGPVWLSNARFL--IAIKQFLCLSLLKNSALSVMAVFQ-------- 477 (1822)
Q Consensus 408 kLs~k~~~~~~~~d~~~~rsk~lsLeLi~~iL~~~g~~f~~~~~~~--~~ik~~Lc~~L~~n~~S~~~~vf~-------- 477 (1822)
.+.....+. ...+ ..--.|-.+++++++++.+....+-.+..|. +.++...||.+.|... +.|+-
T Consensus 225 l~~~~~~~~-~L~~-Iee~~~s~~~elLesilks~~s~~dq~qdf~~a~ll~~~~~Py~~Rl~~---~sv~~i~~l~~~e 299 (1610)
T KOG1848|consen 225 LMYPAIFDQ-LLAF-IEESTKSPGLELLESILKSNASKSDQIQDFAPAELLALNVVPYAERLLL---RSVDLIQKLACHE 299 (1610)
T ss_pred HhcccccHh-HHhc-chhccccchhhhhhhhhhcchhhhHHHHHhhHHHHHHhhhHHHHHHHHH---HHHHHHHHHhccH
Confidence 986542211 1001 1112478899999999999999999998898 8999999988777553 11110
Q ss_pred --HHHHHHHHHHHHHHH---------hhH-----------------------HHHHHHHHHHHHHHhcCCCCCChHHHHH
Q 000232 478 --LQCSIFMSLLSKYRS---------GLK-----------------------AEIGIFFPMLVLRVLENVLQPSFVQKMT 523 (1822)
Q Consensus 478 --lsl~If~~L~~~~r~---------~LK-----------------------~Eievfl~~i~l~ile~~~~~~~~qk~~ 523 (1822)
..+++++..+..++. .++ .+.++|+...+... . ..++-||+.+
T Consensus 300 a~~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~~lk~~-s--~~~~~~p~~l 376 (1610)
T KOG1848|consen 300 AVVNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLASLLKFD-S--MDLELWPRFL 376 (1610)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhHHHHhhhh-h--cCcccCccHh
Confidence 112222222222222 111 11233333321110 0 1244568889
Q ss_pred HHHHHHHHHhChhHHHHHHHhcCCCCCCccHHHHHHHHHHhhccCCCCCCCCCCCchhhHHHHHhHHHHHHH-HHHHHHH
Q 000232 524 VLNLLEKISQDSQIIVDVFVNYDCDVDSPNIFERIVNGLLKTALGPPPGSTTSLSPAQDIAFRYESVKCLVS-IIRSMGT 602 (1822)
Q Consensus 524 vLe~l~~l~~dp~~lveiy~NYDCd~~~~Nife~lv~~L~k~a~~~~~~~~~~~~~~qe~~l~~~aL~~Lv~-il~sl~~ 602 (1822)
++++++++|.++..+..++.|+||++.+.++++..+-.+..+++ .||+. |-.++.+
T Consensus 377 ~~~~~~siv~k~dsi~~~trn~diktk~thlldk~~~plan~vy-----------------------~~lv~ti~nsi~e 433 (1610)
T KOG1848|consen 377 DFLFLKSIVPKNDSIQIFTRNFDIKTKVTHLLDKEILPLANFVY-----------------------KELVGTISNSIQE 433 (1610)
T ss_pred HHHhhccCCCCchhhHHHHhhcccCcchHHHHhhcccccchhHH-----------------------HHHHHhhhHHHHH
Confidence 99999999999999999999999999999998887766665542 22332 3344443
Q ss_pred HHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCccccCCCCCCChHHHHHHHHhHHHHHHHHhhhccCchhHH
Q 000232 603 WMDQQLRIGETYLPKGSETDSSIDNNSIPNGEDGSVPDYEFHAEVNPEFSDAATLEQRRAYKIELQKGISLFNRKPSKGI 682 (1822)
Q Consensus 603 w~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~k~~K~~l~~~~~~Fn~~p~~gi 682 (1822)
...+.... .++ ..| ... .+||
T Consensus 434 ~l~k~s~e------------------------sg~-----------------~eF-------t~k-----------~k~I 454 (1610)
T KOG1848|consen 434 MLNKSSIE------------------------SGG-----------------SEF-------TSK-----------EKGI 454 (1610)
T ss_pred HHHHhHHh------------------------hcC-----------------ccc-------hhh-----------hcCc
Confidence 33221100 000 000 000 1122
Q ss_pred HHHHHcCCCCCCHHHHHHHHhcCCCCChhhHHhhhcccchhHHHHHHHHHHhcCCCCCChhHHHHHHhccCcCCCchHHH
Q 000232 683 EFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKI 762 (1822)
Q Consensus 683 ~~l~~~~~i~~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~~df~~~~~~~aLR~fl~~frLpgE~q~I 762 (1822)
++-. +.+...-+++..+ +|.+
T Consensus 455 e~~~--------------------------------dnds~stavl~~l----~~~~----------------------- 475 (1610)
T KOG1848|consen 455 ELRE--------------------------------DNDSMSTAVLLQL----SFSN----------------------- 475 (1610)
T ss_pred eeec--------------------------------cCchHHHHHHHHH----Hhhh-----------------------
Confidence 1110 0011111222111 1110
Q ss_pred HHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhhhhhhhhhccCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHh
Q 000232 763 DRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVK 842 (1822)
Q Consensus 763 dri~e~Fa~~y~~~np~~f~~~d~~y~laysiimLntdlhn~~vk~kmt~~~Fi~n~~gi~~~~dlp~~~L~~iY~~I~~ 842 (1822)
+.-+|.. -....++||+...- ..+|-+ +|.. .
T Consensus 476 -----------~~li~e~----~~ss~~avSt~~~~-------------a~~v~~------------------l~~~--~ 507 (1610)
T KOG1848|consen 476 -----------KVLIPEG----LYSSRMAVSTLLKR-------------AQDVLH------------------LYIE--D 507 (1610)
T ss_pred -----------hhhcccc----chhhhHHHHHHHHH-------------HHHHHH------------------Hhhh--h
Confidence 0011221 11223444432110 111111 0000 0
Q ss_pred cccccCCCCCCchhhhhhhhhhhcccccchhhhhhhhHHHHHhhhhHHHHHHHHHHhhhccCCCCCceeecCCchhhhhh
Q 000232 843 NEIKMNADSSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALGANGLLIRRIQEQFKSKSGKSESLYHAVTDPGILRFM 922 (1822)
Q Consensus 843 ~ei~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~r~M 922 (1822)
+....+ ..+......+..+.|
T Consensus 508 ~~~s~k-----------------------------------------------------------~~l~~~~kLe~i~~a 528 (1610)
T KOG1848|consen 508 EVLSNK-----------------------------------------------------------CPLPRQTKLEIIFDA 528 (1610)
T ss_pred hhhccC-----------------------------------------------------------CccccceeehhHHHH
Confidence 000000 000011223445666
Q ss_pred HHHhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccCCC-------------c---
Q 000232 923 VEVCWGPMLAAFSVTLDQSDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLHC-------------A--- 986 (1822)
Q Consensus 923 fe~~W~piLaalS~~l~~s~D~~~~~~~L~g~~~~i~ia~~fgL~~~rDafv~sL~kfT~L~~-------------~--- 986 (1822)
....|..++.+++..+..+.|+.+....+.+....+..||..+-+++..+++.+|++|+.... |
T Consensus 529 ~~snq~tildalks~l~~st~e~is~qvl~s~stltsa~~~~~Ade~lna~~~~l~~~~~~s~r~vs~lr~l~s~Spv~g 608 (1610)
T KOG1848|consen 529 VLSNQSTILDALKSTLPESTDEIISAQVLASYSTLTSACGRCSADEVLNALKEALVPFKDFSPRPVSRLRCLNSESPVVG 608 (1610)
T ss_pred HhhccccHHHHhhhhccccccchhhHHHHhchHHHHhccccccchhHHHHHHHhhCCcccCCccHHHHHhhccccCcccc
Confidence 778899999999999999999999999999999999999999999999999999999985321 0
Q ss_pred -------------------------------------cccchhhHHHHHHHHHHHhhcCCchhhchHHHHHHHHHHHHHH
Q 000232 987 -------------------------------------ADMKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQ 1029 (1822)
Q Consensus 987 -------------------------------------~~~~~KNv~alraLl~iA~~~Gn~L~~sW~~IL~~is~le~lq 1029 (1822)
..++.||+.++|+.++++.++-+.++.+|.+++.+.+.++..
T Consensus 609 r~~~sew~~dfetw~~~t~~~~~~p~~~~~s~ss~~~v~lT~snvqa~rsf~t~~~~~~~sy~~sw~llm~t~~~ls~~- 687 (1610)
T KOG1848|consen 609 RKMGSEWKIDFETWDKATIILNRSPTSKHLSTSSLNRVNLTNSNVQASRSFSTLMDYELVSYKNSWSLLMYTTSSLSQP- 687 (1610)
T ss_pred ccCCcceEEEEeeccceeeEecCCCCCccccccCCCccccccchHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcch-
Confidence 124679999999999999999999999999999988766542
Q ss_pred HhcCCCCCCCccccccchhhhhhhcccCCCCCccccCCCCCCcchhhccCCcccccccCCCCCCCCCHHHHHHHhhhhhh
Q 000232 1030 LLGEGAPTDASFLTVSNVEADEKTQKSMGFPSLKKKGTLQNPSVMAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNL 1109 (1822)
Q Consensus 1030 li~~g~~~d~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~q~~~~~~~~~~~s~~st~~~~~~~~~lt~eei~~~~~~~~~ 1109 (1822)
.. + .|... .+. +. +..+.+|..++.+-. ....+.
T Consensus 688 --~~--------m-~p~qt-------------------~l~------v~-------t~~~~hp~~p~~~~~-~~ynd~-- 721 (1610)
T KOG1848|consen 688 --AY--------M-EPLQT-------------------LLA------VI-------TSSSVHPIQPLTAPR-QSYNDD-- 721 (1610)
T ss_pred --hh--------c-CHHHh-------------------hHH------HH-------hcCCCCCCCcchhhH-HHHHHH--
Confidence 11 0 00000 000 00 000011111111111 111111
Q ss_pred hhhhhccchHHHHHhcccCCHHHHHHHHHHHHHhchhhcCCC-----CCCcc--chHHHHHHHHhhcccccccchhhHHH
Q 000232 1110 LDQIGNFELNHVFAHSQRLNSEAIVAFVKALCKVSISELQSP-----TDPRV--FSLTKLVEIAHYNMNRIRLVWSRMWN 1182 (1822)
Q Consensus 1110 l~~i~~~~id~lF~~S~~L~~~Ai~~Fv~ALc~vS~eEl~s~-----~~Pr~--FsLqKLveVa~~Nm~Rirl~W~~IW~ 1182 (1822)
.+.+.-.+++|.++++++..+....++||.+++.+-+... ..-|. |-++-.+-.+..|--|-. .-|+
T Consensus 722 --~~lssl~~~v~~~~a~~~~ss~~slL~ali~ls~~sli~~~~~~~sslr~~~~~l~v~~~~~~l~e~snq----~~~~ 795 (1610)
T KOG1848|consen 722 --LLLSSLKNSVYKTSANRSISSGISLLRALIELSYSSLILETVCSCSSLRFLDSKLDVSGWSLILKELSNQ----FKII 795 (1610)
T ss_pred --HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhhccccccccccchhhhhHHHHHHHHhhhH----HHHH
Confidence 1122347899999999999999999999999998754311 11121 222222222222222222 2234
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHH-HHH-HhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhh
Q 000232 1183 VLSDFFVSVGLSENLSVAIFVMDSLRQL-AMK-FLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSR 1260 (1822)
Q Consensus 1183 ~L~~hf~~vg~h~n~~va~~AiDsLrqL-s~k-fLe~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~cl~qml~~~ 1260 (1822)
...+||.+.+||--.++.. -+++-++. +.+ ...+.+ -++.-|.+++-.++.....++..|+|---++||-.++++.
T Consensus 796 naa~~l~t~~n~vl~s~~~-~~asals~da~~dv~sk~t-i~~es~~~~l~sl~v~~~s~~~~evr~~sl~~l~silet~ 873 (1610)
T KOG1848|consen 796 NAAPELRTRANNVLASILV-DVASALSNDASPDVYSKQT-IFFESLGMLLPSLEVSDNSSRGVEVRISSLEALVSILETV 873 (1610)
T ss_pred HhHHHHHHHHHHHHHHHHh-hhhhhhhcccccchhccce-eeHhhhHHHHHHHHHHHhcCccceeeHHHHHHHHHHHhcc
Confidence 4555666655544222211 12222221 000 000111 1223344555555555566778899999999999999999
Q ss_pred ccccccCcHHHHHHHHHhhcc---chHHHHHHHHHHHHHHHhcccCcccccccchHHHHHHHHHHHHcCCCCccccHHHH
Q 000232 1261 VSNVKSGWKSVFSIFTAAAAD---ERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAI 1337 (1822)
Q Consensus 1261 ~~~IkSGWk~IF~iL~~aa~~---~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI 1337 (1822)
|+.+-+||..||++|+.++.. ++.++|++||+++++|++||++.+| .+|+.+||+++..|++|+.|+||||+||
T Consensus 874 ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp---~sci~~lidtl~~fs~QktdlNISltAi 950 (1610)
T KOG1848|consen 874 GEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLP---TSCILDLIDTLLVFSRQKTDLNISLTAI 950 (1610)
T ss_pred chhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCC---hHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 999999999999999987643 4789999999999999999999999 6999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccC--CCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHH
Q 000232 1338 AFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQS--FSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLF 1415 (1822)
Q Consensus 1338 ~~L~~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~--~~~~~~~~~lW~pLL~~Ls~l~~d~R~eVR~~AlqtLF 1415 (1822)
++||.++|+++.......+. +.... ..++... ..+...++.+||.||..|+++|.|+|+||||+|.||||
T Consensus 951 ~lfWtvsDfl~~km~S~sed----~~~~~----~~e~~~ss~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVRngAvqtlf 1022 (1610)
T KOG1848|consen 951 GLFWTVSDFLKNKMFSTSED----SCAYN----SVEDLYSSMKSKEILPEVLWIMLLVHLADLCEDSRAEVRNGAVQTLF 1022 (1610)
T ss_pred HHHHHHHHHHHhhhhccchh----hhhhc----chhhhcccccchhhhhhHHHHHHHHHHHHHhccchHHHhhhHHHHHH
Confidence 99999999998632111111 01011 0111111 12233578999999999999999999999999999999
Q ss_pred HHHHhcCCCCChhHHHHHHHHhHHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHHHHHHHHHhhhchh
Q 000232 1416 NILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVV 1495 (1822)
Q Consensus 1416 ~iL~~~G~~f~~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~laL~~lv~lf~~yf~~l 1495 (1822)
+|+.+||+.|++..|+.|||.|++||++...... .+++ ++.+.+++|. ||+++++.|++++|..||..+
T Consensus 1023 ri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~----~~ew------ngkeiqkqwt-et~~ltisgIaklf~e~fk~l 1091 (1610)
T KOG1848|consen 1023 RIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQN----VSEW------NGKEIQKQWT-ETSCLTISGIAKLFSENFKLL 1091 (1610)
T ss_pred HHHhhhcccCChhHHHHHHHHHHHHHhccccccc----hhhh------cchhHhhhhh-hhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876522 1111 1244569996 999999999999999999876
Q ss_pred h------hhHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHh
Q 000232 1496 R------SQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGE 1531 (1822)
Q Consensus 1496 ~------~~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll~~ 1531 (1822)
. ..|..+|++|.+.++..+.+++..++.|+|.++.+
T Consensus 1092 lnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~s 1133 (1610)
T KOG1848|consen 1092 LNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFS 1133 (1610)
T ss_pred HhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHH
Confidence 4 46999999999999999999999999999999984
No 6
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-49 Score=432.30 Aligned_cols=191 Identities=52% Similarity=0.886 Sum_probs=185.6
Q ss_pred HhHHHHHHHHhhhccCchhHHHHHHHcCCCCCCHHHHHHHHhcCCCCChhhHHhhhcccchhHHHHHHHHHHhcCCCCCC
Q 000232 662 AYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMD 741 (1822)
Q Consensus 662 ~~K~~l~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~~df~~~~ 741 (1822)
++-+.+.-|-.+||.+|+|||+||+++.++..+|++||+||+.-+||+|++||+|||+++++|++||++|++...|.+++
T Consensus 60 q~~k~~~~GRKKFNmDP~Kgiq~l~e~~ll~~dpq~iA~flykGEGLnKtaIG~yLGer~~~nl~vL~aFv~~Hef~dln 139 (395)
T KOG0930|consen 60 QRNKQVAMGRKKFNMDPKKGIQFLIENDLLQNDPEDIARFLYKGEGLNKTAIGDYLGERDEFNLQVLHAFVDLHEFTDLN 139 (395)
T ss_pred HHhHHHhhchhhcCCChHHHhHHHHHcccccCCHHHHHHHHHhcCCcchhhHhhhhccCchhHHHHHHHHHHHHHhccch
Confidence 34455778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhccCcCCCchHHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhhhhhhhhhccCCCCHHHHHHhhcC
Q 000232 742 FGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRG 821 (1822)
Q Consensus 742 ~~~aLR~fl~~frLpgE~q~Idri~e~Fa~~y~~~np~~f~~~d~~y~laysiimLntdlhn~~vk~kmt~~~Fi~n~~g 821 (1822)
++.|||.||=+||||||+|||||+||+||+|||.|||++|.|+|++|+|+||+|||||.||||+||.|-+++.||.+|||
T Consensus 140 lVqALRQfLwSFRLPGEaQKIdRmmEaFA~rYclcNPgvfqstDtcyvlsfs~IMlNTsLHNpNVrDkP~lErfi~MNrg 219 (395)
T KOG0930|consen 140 LVQALRQFLWSFRLPGEAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNPNVKDKPTLERFIAMNRG 219 (395)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccCCcccccCceeeeeeehhhhhcccccCCCCCCCccHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcccccCCCCC
Q 000232 822 IDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 852 (1822)
Q Consensus 822 i~~~~dlp~~~L~~iY~~I~~~ei~~~~~~~ 852 (1822)
||.|.|+|+|.|..+|++|+..+++.++|..
T Consensus 220 ineggdlpee~LrnlyeSi~~epFkIPeddg 250 (395)
T KOG0930|consen 220 INEGGDLPEELLRNLYESIKNEPFKIPEDDG 250 (395)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCCCCCcccC
Confidence 9999999999999999999999999998754
No 7
>cd00171 Sec7 Sec7 domain; Domain named after the S. cerevisiae SEC7 gene product. The Sec7 domain is the central domain of the guanine-nucleotide-exchange factors (GEFs) of the ADP-ribosylation factor family of small GTPases (ARFs) . It carries the exchange factor activity.
Probab=100.00 E-value=1.8e-48 Score=430.33 Aligned_cols=183 Identities=60% Similarity=1.012 Sum_probs=179.6
Q ss_pred hHHHHHHHHhhhccCchhHHHHHHHcCCC-CCCHHHHHHHHhcCCCCChhhHHhhhcccchhHHHHHHHHHHhcCCCCCC
Q 000232 663 YKIELQKGISLFNRKPSKGIEFLINSKKV-GDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMD 741 (1822)
Q Consensus 663 ~K~~l~~~~~~Fn~~p~~gi~~l~~~~~i-~~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~~df~~~~ 741 (1822)
+|..+++|+.+||++|++||+||++.+++ +++|++||+||+.+++|||.+||+|||++++++.+||++|++.|||+|++
T Consensus 1 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~iA~fl~~~~~l~k~~ig~~L~~~~~~~~~vL~~y~~~f~f~~~~ 80 (185)
T cd00171 1 RKTLLSEGRQLFNRKPKKGISFLIEKGFLEDDSPKEIAKFLYETEGLNKKAIGEYLGENNEFNSLVLHEFVDLFDFSGLR 80 (185)
T ss_pred CcHHHHHHHHHHccCHHHHHHHHHHCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCchHHHHHHHHHHHhcCCCCCC
Confidence 37789999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhccCcCCCchHHHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHhhhhhhhhhccCCCCHHHHHHhhc
Q 000232 742 FGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFT-SADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNR 820 (1822)
Q Consensus 742 ~~~aLR~fl~~frLpgE~q~Idri~e~Fa~~y~~~np~~f~-~~d~~y~laysiimLntdlhn~~vk~kmt~~~Fi~n~~ 820 (1822)
|++|||.||.+|+||||+|+|||||+.||++||+|||+.+. |+|++|+|+||+||||||+|||++++|||+++|++|++
T Consensus 81 i~~ALR~~l~~f~lpgE~Q~Idrile~Fs~~y~~~Np~~~~~~~d~v~~l~~sllmLnTdlHn~~~~~kmt~~~Fi~~~~ 160 (185)
T cd00171 81 LDEALRKFLQSFRLPGEAQKIDRLLEKFSERYCECNPGIFSSSADAAYTLAYSIIMLNTDLHNPNVKKKMTLEDFIKNLR 160 (185)
T ss_pred HHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHCCCCCCCChhHHHHHHHHHHHHhHHhcCcccCCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhccc
Q 000232 821 GIDDGKDLPEEYLGVLYDQIVKNEI 845 (1822)
Q Consensus 821 gi~~~~dlp~~~L~~iY~~I~~~ei 845 (1822)
|+++|+++|+++|++||++|+.+||
T Consensus 161 ~~~~~~~~~~~~L~~iY~~I~~~~~ 185 (185)
T cd00171 161 GINDGEDFPREFLKELYDSIKNNEI 185 (185)
T ss_pred cccCCCCCCHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999986
No 8
>PF01369 Sec7: Sec7 domain; InterPro: IPR000904 The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ]. The 3D structure of the domain displays several alpha-helices []. It was found to be associated with other domains involved in guanine nucleotide exchange (e.g., CDC25, Dbl) in mammalian factors [].; GO: 0005086 ARF guanyl-nucleotide exchange factor activity, 0032012 regulation of ARF protein signal transduction, 0005622 intracellular; PDB: 3SWV_A 3L8N_A 2R09_A 2R0D_B 1RE0_B 3LTL_A 1KU1_A 1XSZ_A 1XT0_B 1R8Q_E ....
Probab=100.00 E-value=3.9e-48 Score=430.75 Aligned_cols=185 Identities=53% Similarity=0.965 Sum_probs=169.8
Q ss_pred HHhHHHHHHHHhhhccCchhHHHHHHHcCCC--CCCHHHHHHHHhcCCCCChhhHHhhhcccchhHHHHHHHHHHhcCCC
Q 000232 661 RAYKIELQKGISLFNRKPSKGIEFLINSKKV--GDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFK 738 (1822)
Q Consensus 661 k~~K~~l~~~~~~Fn~~p~~gi~~l~~~~~i--~~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~~df~ 738 (1822)
|++|..+.+|+.+||.+|++||+||++.|++ +++|++||+||+.+++|||.+||+|||++++++.+||++|++.|||+
T Consensus 2 k~~k~~l~~~~~~FN~~p~~gi~~l~~~~~~~~~~~~~~iA~fL~~~~~l~k~~ige~Lg~~~~~n~~vL~~y~~~fdf~ 81 (190)
T PF01369_consen 2 KKRKRQLEEGVELFNKNPKKGIEYLIQNGFLENEDDPKSIAKFLFQTPGLDKKKIGEYLGKDNPFNRDVLKEYISLFDFS 81 (190)
T ss_dssp GHHHHHHHHHHHHHHHSHHHHHHHHHHTTSSTS-SSHHHHHHHHHHTTTS-HHHHHHHHTSSSHHHHHHHHHHHHTSS-T
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHhccchHHHHHHHHHHHHcCCc
Confidence 5678999999999999999999999999998 78999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHhccCcCCCchHHHHHHHHHHHHHHHHhCCC--CCCCccHHHHHHHHHHHhhhhhhhhhccCCCCHHHHH
Q 000232 739 GMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS--SFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFI 816 (1822)
Q Consensus 739 ~~~~~~aLR~fl~~frLpgE~q~Idri~e~Fa~~y~~~np~--~f~~~d~~y~laysiimLntdlhn~~vk~kmt~~~Fi 816 (1822)
|++|++|||.||..|+||||+|+|||||+.||++||+|||+ .|.|+|+||+|+||+||||||+|||++++|||+++|+
T Consensus 82 ~~~i~~ALR~~l~~f~LpgE~q~idril~~Fs~~y~~~Np~~~~~~~~d~v~~l~~slimLnTdlHn~~~~~kmt~~~Fi 161 (190)
T PF01369_consen 82 GMSIDEALRKFLSSFRLPGESQQIDRILEAFSERYYECNPNSTPFKSPDTVYILAYSLIMLNTDLHNPNIKKKMTKEDFI 161 (190)
T ss_dssp TS-HHHHHHHHCTSS-BTSSHHHHHHHHHHHHHHHHHHTTTGCSSSSHHHHHHHHHHHHHHHHHHH-TTSSSS--HHHHH
T ss_pred CccHHHHHHHhcceeeeccchHHHHHHHHHHHHHHHHhCCcccccccHhHHHHHHHHHHHHhHHHHhhccccCCcHHHHH
Confidence 99999999999999999999999999999999999999996 8999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCCCCHHHHHHHHHHHHhccc
Q 000232 817 RNNRGIDDGKDLPEEYLGVLYDQIVKNEI 845 (1822)
Q Consensus 817 ~n~~gi~~~~dlp~~~L~~iY~~I~~~ei 845 (1822)
+|++|+++|+++|+++|++||++|+.+||
T Consensus 162 ~~~~~~~~~~~~~~~~L~~iY~~I~~~~~ 190 (190)
T PF01369_consen 162 KNTRGIDDGKDIPEEFLESIYDSIKANPF 190 (190)
T ss_dssp HHTTTTBTTBS--HHHHHHHHHHHHHS--
T ss_pred HHhhcccCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999986
No 9
>smart00222 Sec7 Sec7 domain. Domain named after the S. cerevisiae SEC7 gene product, which is required for proper protein transport through the Golgi. The domain facilitates guanine nucleotide exchange on the small GTPases, ARFs (ADP ribosylation factors).
Probab=100.00 E-value=9.5e-48 Score=425.97 Aligned_cols=183 Identities=57% Similarity=0.946 Sum_probs=179.5
Q ss_pred hHHHHHHHHhhhccCchhHHHHHHHcCCCC-CCHHHHHHHHhcCCCCChhhHHhhhcccchhHHHHHHHHHHhcCCCCCC
Q 000232 663 YKIELQKGISLFNRKPSKGIEFLINSKKVG-DSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMD 741 (1822)
Q Consensus 663 ~K~~l~~~~~~Fn~~p~~gi~~l~~~~~i~-~~p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~~df~~~~ 741 (1822)
+|..+.+|+.+||.+|++||+||++.|++. ++|++||+||+.+++|||++||+|||++++++.+||++|++.|||+|++
T Consensus 2 ~k~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vL~~y~~~f~f~~~~ 81 (187)
T smart00222 2 RKKLLSEGSVKFNDKPKKGIDSLQEKGFLAKDDPQDVADFLSKNEGLNKKAIGDYLGEHDEFNRLVLHAFVDLFDFSAKD 81 (187)
T ss_pred chHHHHHHHHHHccCHHHHHHHHHHcCCCCCCCHHHHHHHHHhCCCCCHHHHHHHHcCCChHHHHHHHHHHHhcCcCCCc
Confidence 467899999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhccCcCCCchHHHHHHHHHHHHHHHHhCCCCCC--CccHHHHHHHHHHHhhhhhhhhhccCCCCHHHHHHhh
Q 000232 742 FGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFT--SADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNN 819 (1822)
Q Consensus 742 ~~~aLR~fl~~frLpgE~q~Idri~e~Fa~~y~~~np~~f~--~~d~~y~laysiimLntdlhn~~vk~kmt~~~Fi~n~ 819 (1822)
|++|||.||..|+||||+|+|||+|++||++||+|||+.+. |+|++|+|+||+||||||+|||++|+|||+++|++|+
T Consensus 82 i~~ALR~~l~~f~lpgE~q~Idrile~Fs~~y~~~N~~~~~~~~~d~~y~l~~s~lmLnTdlhn~~~k~kmt~~~Fi~~~ 161 (187)
T smart00222 82 LDQALREFLESFRLPGEAQKIDRLLEAFSSRYCECNPSVFSKLNADAAYTLAYSLIMLNTDLHNPNVKKKMTLEDFIKNV 161 (187)
T ss_pred HHHHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHCCCccCCCChhHHHHHHHHHHHHhHHhcCCccCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999987 9999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHhccc
Q 000232 820 RGIDDGKDLPEEYLGVLYDQIVKNEI 845 (1822)
Q Consensus 820 ~gi~~~~dlp~~~L~~iY~~I~~~ei 845 (1822)
+|+++|.++|++||++||++|+.+||
T Consensus 162 ~~~~~~~~~~~~~L~~iY~~I~~~~i 187 (187)
T smart00222 162 RGSNDGEDLPREFLEELYDSIKNNEI 187 (187)
T ss_pred hccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999986
No 10
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-48 Score=443.95 Aligned_cols=195 Identities=44% Similarity=0.807 Sum_probs=186.6
Q ss_pred HHHHHHHHhhhccCchhHHHHHHHcCCCCCCHHHHHHHHhcCCCCChhhHHhhhccc-chhHHHHHHHHHHhcCCCCCCh
Q 000232 664 KIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGER-EEFSLKVMHAYVDSFNFKGMDF 742 (1822)
Q Consensus 664 K~~l~~~~~~Fn~~p~~gi~~l~~~~~i~~~p~~iA~fL~~~~~L~k~~iGeyLg~~-~~~~~~vl~~y~~~~df~~~~~ 742 (1822)
|....-|..+||.||.|||+||++.||++++|..+|+||+...||+|.|||||||.. ++||..||.|++|.|||++|.+
T Consensus 198 kr~YriGlnlfn~kPekGvQ~Li~rGFv~dtPvgvAhfllqRkGLSrqMIGEflGn~~kqfnrdVLdcvvdemDfssmel 277 (627)
T KOG0931|consen 198 KRHYRIGLNLFNKKPEKGVQYLIERGFVPDTPVGVAHFLLQRKGLSRQMIGEFLGNRQKQFNRDVLDCVVDEMDFSSMEL 277 (627)
T ss_pred HHHhhhccchhcCCcchhhhhhhhhcccCCCchHHHHHHHhhccchHHHHHHHhccccchhhhHHHHHHHhhhccccchH
Confidence 555566999999999999999999999999999999999999999999999999985 6899999999999999999999
Q ss_pred hHHHHHHhccCcCCCchHHHHHHHHHHHHHHHHhCCC---CCCCccHHHHHHHHHHHhhhhhhhhhcc--CCCCHHHHHH
Q 000232 743 GHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS---SFTSADTAYVLAYSVIMLNTDAHNSMVK--DKMTKADFIR 817 (1822)
Q Consensus 743 ~~aLR~fl~~frLpgE~q~Idri~e~Fa~~y~~~np~---~f~~~d~~y~laysiimLntdlhn~~vk--~kmt~~~Fi~ 817 (1822)
|+|||+|...||+|||||||||++|+||.|||.|||. -|.|.|++|+|||+|||||||+|+|+|| +||+++||||
T Consensus 278 DeALRKfqahirvqgEAqKveRlIeAFsqrYc~cNP~~v~qfrnpDTIfiLaFAIIlLNTDmySPnVKperkM~leDFik 357 (627)
T KOG0931|consen 278 DEALRKFQAHIRVQGEAQKVERLIEAFSQRYCKCNPKVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKMKLEDFIK 357 (627)
T ss_pred HHHHHHHHHHeecccHHHHHHHHHHHHHHHHhccCHHHHhhccCCCeehHHHHHHHHhcccccCCCCCHHHhhhHHHHHH
Confidence 9999999999999999999999999999999999998 4999999999999999999999999999 8999999999
Q ss_pred hhcCCCCCCCCCHHHHHHHHHHHHhcccccCCCCCCchhhh
Q 000232 818 NNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAPESKQ 858 (1822)
Q Consensus 818 n~~gi~~~~dlp~~~L~~iY~~I~~~ei~~~~~~~~~~~~~ 858 (1822)
|.||.++|.|+|++.|.+||++|+++|++-.+||...+++.
T Consensus 358 NLRGvDnGeDIpRell~GIYeRIqk~ELktndDHVsqVqkV 398 (627)
T KOG0931|consen 358 NLRGVDNGEDIPRELLVGIYERIQKRELKTNDDHVSQVQKV 398 (627)
T ss_pred hccCCCCcccCcHHHHHHHHHHHHHhhcccCcchHHHHHHH
Confidence 99999999999999999999999999999999997655543
No 11
>KOG1846 consensus Uncharacterized conserved protein, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-43 Score=424.53 Aligned_cols=904 Identities=17% Similarity=0.227 Sum_probs=584.9
Q ss_pred hHHHHHHHHHHHHHHHHh-----CCC----------CCCCccHHHHHHHHHHHhhh-h-hhhhh----cc----CCCCHH
Q 000232 759 AQKIDRIMEKFAERYCKC-----NPS----------SFTSADTAYVLAYSVIMLNT-D-AHNSM----VK----DKMTKA 813 (1822)
Q Consensus 759 ~q~Idri~e~Fa~~y~~~-----np~----------~f~~~d~~y~laysiimLnt-d-lhn~~----vk----~kmt~~ 813 (1822)
+-..|-++..||-++|+. .|+ ...|||.-|..|---.++|. . .|-.- -| .+-|..
T Consensus 403 scedDTalnnFalkccegvsdicspdeDgensfdfqmlmnAdedpmAAhcakLenkfklahgatrrssekdeslapgtaK 482 (1777)
T KOG1846|consen 403 SCEDDTALNNFALKCCEGVSDICSPDEDGENSFDFQMLMNADEDPMAAHCAKLENKFKLAHGATRRSSEKDESLAPGTAK 482 (1777)
T ss_pred chhhHHHHHHHHHHHhcCcccccCCCCCccchhhHHHhcCCCcchHHHHHHHHHHHhccCcccccchhccCcccCcchHH
Confidence 457899999999999975 343 23588888888877777772 2 22211 01 256789
Q ss_pred HHHHhhcCCCCCCCCCHHHHHHHHHHHHhcccccCCC-------CCCchhhhhhhhhhhcccccchhhhhhhhHHHHHhh
Q 000232 814 DFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNAD-------SSAPESKQANSLNKLLGLDGILNLVIGKQTEEKALG 886 (1822)
Q Consensus 814 ~Fi~n~~gi~~~~dlp~~~L~~iY~~I~~~ei~~~~~-------~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 886 (1822)
+|++....-.-.--+.+.+.++||+.|.....-..+. ...+..+.. . | .+|.-.. .+..+
T Consensus 483 dFmkalqeSgldiiaapanieeideaiLdfnmlfeagfcgshaDaskplikil---q-----d-flntdag--lesaa-- 549 (1777)
T KOG1846|consen 483 DFMKALQESGLDIIAAPANIEEIDEAILDFNMLFEAGFCGSHADASKPLIKIL---Q-----D-FLNTDAG--LESAA-- 549 (1777)
T ss_pred HHHHHHHhcCceeeeccccHHHHHHHHHhhhhccccccccCchhccccHHHHH---H-----H-hhhhhHH--HHHHh--
Confidence 9999875432223467889999999998765432211 111110000 0 0 0110000 00000
Q ss_pred hhHHHHHHH----HHHhhhccCCCCCceeecCCchhhhhhHHHhhHHHHHHHHhhhhc----------------------
Q 000232 887 ANGLLIRRI----QEQFKSKSGKSESLYHAVTDPGILRFMVEVCWGPMLAAFSVTLDQ---------------------- 940 (1822)
Q Consensus 887 ~~~~~~~~~----~~~~~~~~~~~~~~f~~~~~~~~~r~Mfe~~W~piLaalS~~l~~---------------------- 940 (1822)
++..++.+- -+..+.+.. ++. .+.++.+.|...--||..+..+++.++-.
T Consensus 550 aggcliahaaTeslealkkrid--dSg--cVagVAfarldkVfcnkkliDalsspilpglmagindfdafakGlladgeK 625 (1777)
T KOG1846|consen 550 AGGCLIAHAATESLEALKKRID--DSG--CVAGVAFARLDKVFCNKKLIDALSSPILPGLMAGINDFDAFAKGLLADGEK 625 (1777)
T ss_pred hcceeeccccccCHHHHhhhcc--ccc--ceeehhhhHHHHhhhhhhhhhhhccccchhhhhcccchHHHHhhhhhhhHH
Confidence 111111100 001111111 111 23455556666666898888887766221
Q ss_pred -----cCcHHHHHHHHHHHHHHHHHHHhhCCchHHHHHHHHHHhhccCC---------Cccc------------------
Q 000232 941 -----SDDKLATNQCLQGFRHAVHVTAVMGMQTQRDAFVTSVAKFTYLH---------CAAD------------------ 988 (1822)
Q Consensus 941 -----s~D~~~~~~~L~g~~~~i~ia~~fgL~~~rDafv~sL~kfT~L~---------~~~~------------------ 988 (1822)
...++....-.+|++++++++|..|....++..++-|+-...-. .|.+
T Consensus 626 ekniKeRqddaeCmeedglakaarlscaagvaaicasalaflAaaecrkeeeeeREAiepSdagmqnkcaVaQkLelegk 705 (1777)
T KOG1846|consen 626 EKNIKERQDDAECMEEDGLAKAARLSCAAGVAAICASALAFLAAAECRKEEEEEREAIEPSDAGMQNKCAVAQKLELEGK 705 (1777)
T ss_pred HhhhhhhhcchhhhchhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcChHHHHHHHHHHHHHHHhhhhh
Confidence 01123455668999999999999998888887776666543321 1111
Q ss_pred -----cchhhHHHHHHHHHHHhhcCCchhhchHHHHHHHHHHHHHHHh--cCCC--CCCCccccccchhhhhh-------
Q 000232 989 -----MKQKNVDAVKAIISIAIEDGNHLQEAWEHILTCLSRIEHLQLL--GEGA--PTDASFLTVSNVEADEK------- 1052 (1822)
Q Consensus 989 -----~~~KNv~alraLl~iA~~~Gn~L~~sW~~IL~~is~le~lqli--~~g~--~~d~~~~~~p~~~~~~~------- 1052 (1822)
...-++.|+-+.|......|++-.++|+++.+..-.+-.++.. ..|. ++-.-.--.|+.-..++
T Consensus 706 cggifehlaetlCceadLrddaeaGshnddcqkhtcrscEhlgalehnhdeagaaihalscskcseqkaegeagilGdae 785 (1777)
T KOG1846|consen 706 CGGIFEHLAETLCCEADLRDDAEAGSHNDDCQKHTCRSCEHLGALEHNHDEAGAAIHALSCSKCSEQKAEGEAGILGDAE 785 (1777)
T ss_pred hhHHHHHHHHHHHHHHHhhchhhhcCCCCccccccchHHHHHHHHHhhcccccccCCccchhccchhhhhccccccCChh
Confidence 1123567888999999999999999999998875443333321 1111 11000000000000000
Q ss_pred -hcccCCCCCccccCCC-------CCCcc-----------hhhccCCcccccccCCCCCCCCCHHHHHHHhhhhhhhhhh
Q 000232 1053 -TQKSMGFPSLKKKGTL-------QNPSV-----------MAVVRGGSYDSTTVGVNSPGLVTPEQINHFIANLNLLDQI 1113 (1822)
Q Consensus 1053 -~~~~~~~~s~~~~~~~-------q~~~~-----------~~~~~~~s~~st~~~~~~~~~lt~eei~~~~~~~~~l~~i 1113 (1822)
-.+++ ..++-|+++. ++-+. ....+|||..|. ...+. +-|.
T Consensus 786 CeekPp-ehkferqgredkeadkeeklsaaDlsiEgalGdapdfrggslmSg------------hSaak-------aict 845 (1777)
T KOG1846|consen 786 CEEKPP-EHKFERQGREDKEADKEEKLSAADLSIEGALGDAPDFRGGSLMSG------------HSAAK-------AICT 845 (1777)
T ss_pred hcCCCc-ccChhhcCcccccccccccccHHhhhhccccCCCccccccccccc------------chHHH-------HHHH
Confidence 00000 0000011100 00000 011222222211 11111 2345
Q ss_pred hccchHHHHHhc-ccCCHHHHHHHHHHHHHhchhhcCCC---------CCC--------c--cchHHHHHH-HHh--hcc
Q 000232 1114 GNFELNHVFAHS-QRLNSEAIVAFVKALCKVSISELQSP---------TDP--------R--VFSLTKLVE-IAH--YNM 1170 (1822)
Q Consensus 1114 ~~~~id~lF~~S-~~L~~~Ai~~Fv~ALc~vS~eEl~s~---------~~P--------r--~FsLqKLve-Va~--~Nm 1170 (1822)
.+..+||+|+.. ..|...|+.+|.-|+.+.|...+..+ .-| | ...|-||.+ +.. ...
T Consensus 846 LiakaDRffedacdeLcLmALgdfcvaiikaSenqlFhsvTaqkdihLaaPgevkstqdrksalhLfRigdaiirilrhk 925 (1777)
T KOG1846|consen 846 LIAKADRFFEDACDELCLMALGDFCVAIIKASENQLFHSVTAQKDIHLAAPGEVKSTQDRKSALHLFRIGDAIIRILRHK 925 (1777)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhHHHHHHHHhhhcceeeeeccceeeEeecCcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence 567799999986 88999999999999999998877542 112 3 345666666 222 333
Q ss_pred cccccchhhHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHHhc-hhhhhchhhhhhhHHHHHHHHhc-cCChHHHH
Q 000232 1171 NRIRLVWSRMWNVLSDFFVSV-GLSENLSVAIFVMDSLRQLAMKFLE-REELANYNFQNEFLRPFVIIMQK-SGSAEIRE 1247 (1822)
Q Consensus 1171 ~Rirl~W~~IW~~L~~hf~~v-g~h~n~~va~~AiDsLrqLs~kfLe-~eEL~~f~FQ~~fLkPfe~im~~-~~~~eIre 1247 (1822)
-|+.++-+.+|..+..||+++ +||...+|+..|+..+..+.+++|. +.|-++|+|.+.+++||+.+|+. +++.|+++
T Consensus 926 aRPLlHqMfcwpLVaaHfVeasaCdkErhvSqiAaSaiadilTelLtdwnEpPgfhFNeaLfgPFeramclElCdEdtkd 1005 (1777)
T KOG1846|consen 926 ARPLLHQMFCWPLVAAHFVEASACDKERHVSQIAASAIADILTELLTDWNEPPGFHFNEALFGPFERAMCLELCDEDTKD 1005 (1777)
T ss_pred ccchhHHHHHHhhhhHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCCCcchhHhhhchHHHHHHHHhccHHHHH
Confidence 499999999999999999999 9999999999999999999888884 68899999999999999999986 57999999
Q ss_pred HHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHH----HH---------HHHHHHHHH-HHhcccCcccccccchH
Q 000232 1248 LIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKN----IV---------LLAFETMEK-IVREYFPHITETESTTF 1313 (1822)
Q Consensus 1248 ~IL~cl~qml~~~~~~IkSGWk~IF~iL~~aa~~~~~~----iV---------~~aF~~l~~-I~~d~l~~l~~~~~~~f 1313 (1822)
++|..|.++|+.++++|.||||++|+.|.++...+..+ ++ .-+|++++. +..|..+.+ .++.
T Consensus 1006 QflsSigeLVescadkIgSGWkPLFgaLeaVgggnksemkaaldedysmgKghacafDVfeafLniDnipVf----anaa 1081 (1777)
T KOG1846|consen 1006 QFLSSIGELVESCADKIGSGWKPLFGALEAVGGGNKSEMKAALDEDYSMGKGHACAFDVFEAFLNIDNIPVF----ANAA 1081 (1777)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHHHHHHhcCCcHHHHHHHHhcccccccccchhhHHHHHHhccCchHhH----HHHH
Confidence 99999999999999999999999999999997543221 22 257888874 444665544 5899
Q ss_pred HHHHHHHHHHHcCCC-----------------CccccHHHHHHHHHHHHHhhcC---Ccccc---cCCCC-CC--CCCC-
Q 000232 1314 TDCVKCLLTFTNSRF-----------------NSDVCLNAIAFLRFCAVKLADG---GLVCN---EKGSV-DG--SSSP- 1366 (1822)
Q Consensus 1314 ~d~I~cL~~F~~~~~-----------------d~niSL~AI~~L~~~~d~L~~~---~~~~~---~~~~~-~~--~~~~- 1366 (1822)
..||.||.+|.++-. ..+++|.|+++|.+|+.-++.. |.+.+ .+... +. ..++
T Consensus 1082 lecimClmkflkgleevDckeigdcapapgapstdKOGaALdlLpncsqLiakiYkmPhkPifhlghladLprkcldqsa 1161 (1777)
T KOG1846|consen 1082 LECIMCLMKFLKGLEEVDCKEIGDCAPAPGAPSTDLCLAALDLLPNCSQLIAKIYKMPHKPIFHLGHLADLPRKCLDQSA 1161 (1777)
T ss_pred HHHHHHHHHHHhcccccccchhcccCCCCCCCcchhhHHHHHHHHhHHHHHHHHHcCCCchhhhhhhhhcchHHHHhhhh
Confidence 999999999986532 3568899999999998866543 22100 00000 00 0000
Q ss_pred CCCCCCCc-------ccCCCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHhH
Q 000232 1367 PVNDNAPD-------LQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLF-PRQFWMGVYSHVI 1438 (1822)
Q Consensus 1367 p~~~~~~~-------~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~eVR~~AlqtLF~iL~~~G~~f-~~~~W~~i~~~VL 1438 (1822)
..+++++. ...+.+......+|+.+|+.+.....++.+.-+..-+..+|++|....... ++.|...+...+|
T Consensus 1162 mdeDgIEsphgpfpvledfdddiagiElfiiflEQicaallncppnhQknlLDlifeLLrDiskkPlGadfGgvamsali 1241 (1777)
T KOG1846|consen 1162 MDEDGIESPHGPFPVLEDFDDDIAGIELFIIFLEQICAALLNCPPNHQKNLLDLIFELLRDISKKPLGADFGGVAMSALI 1241 (1777)
T ss_pred cccCCccCCCCCccccccccccchhHHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHHhccCCCCCCCccchhhHHH
Confidence 00111111 112233445678999999999999889999999999999999999877654 8999999999999
Q ss_pred HhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHH--hHHHHHHHHHHHHHhhhc-------------hhhhhHHHHH
Q 000232 1439 FPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSE--TAAIGAECLVDIFICFFD-------------VVRSQLPGVV 1503 (1822)
Q Consensus 1439 fPlfd~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~e--T~~laL~~lv~lf~~yf~-------------~l~~~w~~lL 1503 (1822)
+|.++.|..+. +-+...|+.. -..+|+..-+.+...+.. .+..++.+.+
T Consensus 1242 LPvmqkWiRRl----------------dkdesywdmakaifKhaIGaccelVidhielekhSswddRlerdIcalikdcf 1305 (1777)
T KOG1846|consen 1242 LPVMQKWIRRL----------------DKDESYWDMAKAIFKHAIGACCELVIDHIELEKHSSWDDRLERDICALIKDCF 1305 (1777)
T ss_pred HHHHHHHHHHh----------------chhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHH
Confidence 99999996532 4566789744 467777776666655442 3455788999
Q ss_pred HHHHHhhcCCCcchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhccchhHHh----hcccCCCC--------C
Q 000232 1504 SILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKETTASTLPSFVKV----LRTMNDIE--------I 1571 (1822)
Q Consensus 1504 ~lL~~~i~~~~~~ia~~g~~~L~~Ll~~~~~~f~~~~W~~i~~~l~~~f~~T~p~~~~~----~~~~~~~~--------~ 1571 (1822)
.+...|...+.+.+.++|++|++.++...|++|++++|+..|++|.++|..|+-+...+ ++++.+++ +
T Consensus 1306 efdkaCaaaPaefiliagcsciryvlvtagpkFseemWniaccaLadAfsasLkhVkdLlgcFhrgsedenGdgcqigda 1385 (1777)
T KOG1846|consen 1306 EFDKACAAAPAEFILIAGCSCIRYVLVTAGPKFSEEMWNIACCALADAFSASLKHVKDLLGCFHRGSEDENGDGCQIGDA 1385 (1777)
T ss_pred HHHHHHhhCcHHHHHHhhcchheeeeeccCccccHHHHHHHHHHHHHHHHhhhHHHHHHHhHhhcCCcccCCCcceeccc
Confidence 99999999999999999999999999999999999999999999999999999987654 34444443 1
Q ss_pred CCCCCccccc-----------------ccCCCCCCC-------------CCCCch--hhhhhhhh--HHHhhhhHHHHHH
Q 000232 1572 PNTSQSYADM-----------------EMDSDHGSI-------------NDNIDE--DNLQTAAY--VVSRMKSHITLQL 1617 (1822)
Q Consensus 1572 p~~~~~~~~~-----------------~~~~~~~~~-------------~~~~~~--~~~~~~~~--~~~~~~~~cvlQL 1617 (1822)
...+.+..+. ++.++.+.+ ++...+ ....+..| .++.+++||+
T Consensus 1386 apSsnPgaeaerqlIaAmaqlsfmkdkqcgpkkpeeeDhaqgcaLIielhgadkpnghtkhrlefheIisSLfsHcl--- 1462 (1777)
T KOG1846|consen 1386 APSSNPGAEAERQLIAAMAQLSFMKDKQCGPKKPEEEDHAQGCALIIELHGADKPNGHTKHRLEFHEIISSLFSHCL--- 1462 (1777)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHhhccCCCCCcchhhhhcceeeEecCCccCCCCcccceeeHHHHHHHHHHHHH---
Confidence 1111121111 112211100 000000 01112222 2456677775
Q ss_pred HHHHHHHHHHH-----------------------HhhccCCHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhhccc
Q 000232 1618 LSVQVAANLYK-----------------------LHLRLLSTTNVKILLDIFSSIASHAHELNSELVLQKKLQRVCLVLE 1674 (1822)
Q Consensus 1618 lLIq~~~el~~-----------------------~~~~~l~~~~l~~L~~~L~~s~~fA~~FN~d~~LR~~L~k~g~~~~ 1674 (1822)
|+|.+.+|+- .|.++|+.+.+-+++++|.+||+-|++|++++.|..+|.|+-.+-+
T Consensus 1463 -LLQliadiLLeEdskgPklgaekigqtpeadlagflryiddqilaiifdiLldSseTaldFDsrPalgcLLkkmlGigg 1541 (1777)
T KOG1846|consen 1463 -LLQLIADILLEEDSKGPKLGAEKIGQTPEADLAGFLRYIDDQILAIIFDILLDSSETALDFDSRPALGCLLKKMLGIGG 1541 (1777)
T ss_pred -HHHHHHHHHHHhhccCCCCCccccccCCCcchhhHHHhcchhHHHHHHHHHhhhhhhhhccCCCccHHHHHHHHhccch
Confidence 4555555541 3778999999999999999999999999999999999999877766
Q ss_pred CCCCCchhhhhhHHHHHHHHHHHHhcCCCCchhHHhHHHHHHHHHHHHHHH
Q 000232 1675 LSDPPMVHFENESYQTYLNFLRDSLTGNPSASEELNIESHLVEACEMILQM 1725 (1822)
Q Consensus 1675 ~~~PnLLkQEt~S~~~~l~iLf~m~~d~~~~~~~~~ie~~L~~lc~~il~~ 1725 (1822)
.+|||||...|+.+|.+.|-+-.+-+...-...++.+.|++=-......
T Consensus 1542 --aANLlkasalsfnilfhalscavLlnqeeiTaeqvkkeLfeddakatdS 1590 (1777)
T KOG1846|consen 1542 --AANLLKASALSFNILFHALSCAVLLNQEEITAEQVKKELFEDDAKATDS 1590 (1777)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhchhhhhhhcc
Confidence 7999999999999999999877664443223344555555544444443
No 12
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=100.00 E-value=3.3e-33 Score=306.50 Aligned_cols=162 Identities=41% Similarity=0.676 Sum_probs=150.5
Q ss_pred hhhhhhHHHHHHHHHhhccCCCCCCCCcch--hhhhhhHHHHHHHHHHHHcCccccc---CcHHHHHHHHHHHHHHHHHh
Q 000232 393 SKIREDGFLLFKNICKLSMKFSSQENPDDL--ILLRGKILSLELLKVVTDNGGPVWL---SNARFLIAIKQFLCLSLLKN 467 (1822)
Q Consensus 393 ~~~~~Da~lvfr~LCkLs~k~~~~~~~~d~--~~~rsk~lsLeLi~~iL~~~g~~f~---~~~~~~~~ik~~Lc~~L~~n 467 (1822)
+.+++|||+|||+||+|++|+.++++..+. +..++|++|||||+++|+++|+.|. .|+.|++++|++||++|++|
T Consensus 2 ~~~~~Da~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~ 81 (168)
T PF12783_consen 2 NYYVKDAFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKN 81 (168)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999988776544342 5788999999999999999999999 56699999999999999999
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHhChhHHHHHHHhcCC
Q 000232 468 SALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKISQDSQIIVDVFVNYDC 547 (1822)
Q Consensus 468 ~~S~~~~vf~lsl~If~~L~~~~r~~LK~Eievfl~~i~l~ile~~~~~~~~qk~~vLe~l~~l~~dp~~lveiy~NYDC 547 (1822)
+.++.+++|.+++|||++|+.+||++||.|+|+||+.|+++++++++ ++++||+++||+++++|++|++++|+|+||||
T Consensus 82 ~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~-~~~~~k~~~Le~l~~l~~~p~~l~~lf~NYDC 160 (168)
T PF12783_consen 82 LSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDN-SSLWQKELALEILRELCKDPQFLVDLFVNYDC 160 (168)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHHHHhChhHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999874 47789999999999999999999999999999
Q ss_pred CCCCccHH
Q 000232 548 DVDSPNIF 555 (1822)
Q Consensus 548 d~~~~Nif 555 (1822)
|.+++|||
T Consensus 161 d~~~~nif 168 (168)
T PF12783_consen 161 DLNSKNIF 168 (168)
T ss_pred CCCCCCCC
Confidence 99999987
No 13
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.1e-27 Score=277.79 Aligned_cols=153 Identities=36% Similarity=0.652 Sum_probs=148.8
Q ss_pred HHHHHHHHhcCCCCChhhHHhhhcccchhHHHHHHHHHHhcCCCCCChhHHHHHHhccCcCCCchHHHHHHHHHHHHHHH
Q 000232 695 PEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYC 774 (1822)
Q Consensus 695 p~~iA~fL~~~~~L~k~~iGeyLg~~~~~~~~vl~~y~~~~df~~~~~~~aLR~fl~~frLpgE~q~Idri~e~Fa~~y~ 774 (1822)
...+|+-|+..+|.-|..+..+||++++|..-|..+|+..|+|.|+++|.|||.||..|.|-||.|.-+|++-.|+.|||
T Consensus 307 A~rlArrLY~L~gf~~sdVA~~LgknNeFS~lVa~eYL~fF~Fsg~tlD~ALR~Flka~~L~GETqeRERvL~hFS~Ry~ 386 (774)
T KOG0932|consen 307 AARLARRLYRLEGFRKSDVARHLGKNNEFSRLVAEEYLSFFQFSGMTLDQALREFLKALELMGETQERERVLRHFSRRYF 386 (774)
T ss_pred HHHHHHHHHHhhCccHHHHHHHhcccchHHHHHHHHHHHHhhccCccHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCCCCccHHHHHHHHHHHhhhhhhhhhccCCCCHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHhccccc
Q 000232 775 KCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKM 847 (1822)
Q Consensus 775 ~~np~~f~~~d~~y~laysiimLntdlhn~~vk~kmt~~~Fi~n~~gi~~~~dlp~~~L~~iY~~I~~~ei~~ 847 (1822)
+|||+.|.+.|.++.|.++||+||||||.++|-+|||.++||.|..|+|+|.|||.|+|..+|++|+++.+..
T Consensus 387 ~CNP~~~~S~DgvHtLTCAlmLLNTDLHGhniGKkMtcqdFI~Nl~glndG~dF~kelLKaLy~SIKneklew 459 (774)
T KOG0932|consen 387 QCNPDIFDSEDGVHTLTCALMLLNTDLHGHNIGKKMTCQDFITNLAGLNDGGDFPKELLKALYNSIKNEKLEW 459 (774)
T ss_pred ccCccccccccchhHHHHHHHHHccccccccccccccHHHHHHHHhcccccCccHHHHHHHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999996654
No 14
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=99.85 E-value=7.2e-22 Score=191.38 Aligned_cols=86 Identities=53% Similarity=0.921 Sum_probs=83.9
Q ss_pred HHHhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHHH
Q 000232 1212 MKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAF 1291 (1822)
Q Consensus 1212 ~kfLe~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~cl~qml~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~aF 1291 (1822)
||||+++||+||+||++||+||+.||.++++.+||++||+||.+||+++|++|+|||++||++|+.|+.+.++++|..||
T Consensus 1 ~kfl~~~El~~~~fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af 80 (86)
T PF09324_consen 1 MKFLEKEELSNFNFQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAF 80 (86)
T ss_pred CCccccccccccHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 000232 1292 ETMEKI 1297 (1822)
Q Consensus 1292 ~~l~~I 1297 (1822)
+++++|
T Consensus 81 ~~~~~I 86 (86)
T PF09324_consen 81 QIVQLI 86 (86)
T ss_pred HHHhhC
Confidence 999875
No 15
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=4.7 Score=52.09 Aligned_cols=425 Identities=18% Similarity=0.221 Sum_probs=230.6
Q ss_pred HHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccccchh-hHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 000232 1135 AFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWS-RMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMK 1213 (1822)
Q Consensus 1135 ~Fv~ALc~vS~eEl~s~~~Pr~FsLqKLveVa~~Nm~Rirl~W~-~IW~~L~~hf~~vg~h~n~~va~~AiDsLrqLs~k 1213 (1822)
+.+-+||++-..+-....++.+=.|+|+.|=+- +++...|. +--+.+-+-|.+...|+++.+|..|+.+++|..+-
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa---~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSA---QFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII 204 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhH---HHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec
Confidence 455666665433222223455566777766443 23333332 44567778888888999999999999999986331
Q ss_pred Hhchhhhhchhhh-hhhHHHHHHHHh--ccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHH
Q 000232 1214 FLEREELANYNFQ-NEFLRPFVIIMQ--KSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLA 1290 (1822)
Q Consensus 1214 fLe~eEL~~f~FQ-~~fLkPfe~im~--~~~~~eIre~IL~cl~qml~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~a 1290 (1822)
...-| -+. ..|| |.++. +..+++||..|=+.+.-+++.+.++|-..-+.|.+-.-....|.++++..-|
T Consensus 205 --~~qal---~~~iD~Fl---e~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEA 276 (885)
T KOG2023|consen 205 --QTQAL---YVHIDKFL---EILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEA 276 (885)
T ss_pred --CcHHH---HHHHHHHH---HHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHH
Confidence 00000 000 1122 34443 4457999999999999999999999999888888766666667777766666
Q ss_pred HHHHHHHHhcccCcccc-cccchHHHHHHHHHHHHcCCC-CccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCC-
Q 000232 1291 FETMEKIVREYFPHITE-TESTTFTDCVKCLLTFTNSRF-NSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPP- 1367 (1822)
Q Consensus 1291 F~~l~~I~~d~l~~l~~-~~~~~f~d~I~cL~~F~~~~~-d~niSL~AI~~L~~~~d~L~~~~~~~~~~~~~~~~~~~p- 1367 (1822)
-+..-.+...- ++. .......++|-.|.. .-.+ +.++.| |.+.. +...+ +.+..+ ..|+--
T Consensus 277 CEFwla~aeqp---i~~~~L~p~l~kliPvLl~--~M~Ysd~D~~L-----L~~~e----eD~~v-pDreeD-IkPRfhk 340 (885)
T KOG2023|consen 277 CEFWLALAEQP---ICKEVLQPYLDKLIPVLLS--GMVYSDDDIIL-----LKNNE----EDESV-PDREED-IKPRFHK 340 (885)
T ss_pred HHHHHHHhcCc---CcHHHHHHHHHHHHHHHHc--cCccccccHHH-----hcCcc----ccccC-Cchhhh-ccchhhh
Confidence 55544443332 110 001223333433332 1111 112221 11100 00000 000000 000000
Q ss_pred CCC----CCC-cccCC---CCcccchhhHHHHHHHHHhhccCChHHHHH---HHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 000232 1368 VND----NAP-DLQSF---SDKDDNSSFWVPLLTGLSKLTSDSRSTIRK---SSLEVLFNILKDHGHLFPRQFWMGVYSH 1436 (1822)
Q Consensus 1368 ~~~----~~~-~~~~~---~~~~~~~~lW~pLL~~Ls~l~~d~R~eVR~---~AlqtLF~iL~~~G~~f~~~~W~~i~~~ 1436 (1822)
.+. +.. +.... .|+++...-| ..|+ .||.+|-+++. +.++.
T Consensus 341 sk~~~~~~~~~~eDdddDe~DDdD~~~dW----------------NLRkCSAAaLDVLanvf~-----------~elL~- 392 (885)
T KOG2023|consen 341 SKEHGNGEDADDEDDDDDEDDDDDAFSDW----------------NLRKCSAAALDVLANVFG-----------DELLP- 392 (885)
T ss_pred chhccCccccccccccccccccccccccc----------------cHhhccHHHHHHHHHhhH-----------HHHHH-
Confidence 000 000 00001 1122222234 2333 45555544332 34444
Q ss_pred hHHhhhhhccccCCCCCCCCCCCCCCCCCCccccccH-HHhHHHHHHHHHHHHHhhh----chh----------------
Q 000232 1437 VIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWD-SETAAIGAECLVDIFICFF----DVV---------------- 1495 (1822)
Q Consensus 1437 VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~-~eT~~laL~~lv~lf~~yf----~~l---------------- 1495 (1822)
++||++..... + ..|. .|..++|+..+.+==.++| ..+
T Consensus 393 ~l~PlLk~~L~------------------~---~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVR 451 (885)
T KOG2023|consen 393 ILLPLLKEHLS------------------S---EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVR 451 (885)
T ss_pred HHHHHHHHHcC------------------c---chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCcccee
Confidence 89999987654 1 2363 5788888887665333322 111
Q ss_pred -------h------------hhHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhhcc
Q 000232 1496 -------R------------SQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKETTASTL 1556 (1822)
Q Consensus 1496 -------~------------~~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll~~~~~~f~~~~W~~i~~~l~~~f~~T~ 1556 (1822)
. ..+..+|.=|.+++-..|+.+-.+||++|-.+....|+.+-+ ..+.|.+.|..+|..-.
T Consensus 452 sITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp-~l~~IL~~l~~af~kYQ 530 (885)
T KOG2023|consen 452 SITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVP-YLEYILDQLVFAFGKYQ 530 (885)
T ss_pred eeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHH-HHHHHHHHHHHHHHHHh
Confidence 0 134456666666777889999999999999999999998876 88888888888887644
Q ss_pred chhHHhhcccCCCCCCCCCCcccccccCCCCCCCCCCCchhhhhhhhhHHHhhhhHHH-HHHH---HHHHHHHHHHHhhc
Q 000232 1557 PSFVKVLRTMNDIEIPNTSQSYADMEMDSDHGSINDNIDEDNLQTAAYVVSRMKSHIT-LQLL---SVQVAANLYKLHLR 1632 (1822)
Q Consensus 1557 p~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~cv-lQLl---LIq~~~el~~~~~~ 1632 (1822)
..-+.++. |-..+....+....++=+ +|+| |||.+..|=+
T Consensus 531 ~KNLlILY--------------------------------DAIgtlAdsvg~~Ln~~~YiqiLmPPLi~KW~~lsd---- 574 (885)
T KOG2023|consen 531 KKNLLILY--------------------------------DAIGTLADSVGHALNKPAYIQILMPPLIEKWELLSD---- 574 (885)
T ss_pred hcceehHH--------------------------------HHHHHHHHHHHHhcCcHHHHHHhccHHHHHHHhcCc----
Confidence 43211111 001111111222223223 6665 6777665533
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHhhhcccCCCCCchhhhhhHHHHHHHHHHH
Q 000232 1633 LLSTTNVKILLDIFSSIASHAHELNSELVLQKKLQRVCLVLELSDPPMVHFENESYQTYLNFLRD 1697 (1822)
Q Consensus 1633 ~l~~~~l~~L~~~L~~s~~fA~~FN~d~~LR~~L~k~g~~~~~~~PnLLkQEt~S~~~~l~iLf~ 1697 (1822)
+-+.++-|++||..... .| ..||+.. .+ .-|+.+++|+.+
T Consensus 575 --~DKdLfPLLEClSsia~-------------AL-~~gF~P~--~~-------~Vy~Rc~~il~~ 614 (885)
T KOG2023|consen 575 --SDKDLFPLLECLSSIAS-------------AL-GVGFLPY--AQ-------PVYQRCFRILQK 614 (885)
T ss_pred --ccchHHHHHHHHHHHHH-------------HH-hcccccc--CH-------HHHHHHHHHHHH
Confidence 34568889999988763 23 3788866 23 346777777773
No 16
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=96.10 E-value=1.3 Score=64.48 Aligned_cols=148 Identities=11% Similarity=0.088 Sum_probs=104.4
Q ss_pred cchhhHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHH-HhHHhhhhhccccCCCCCCCCCCCCC
Q 000232 1383 DNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYS-HVIFPIFNGVCDKKDMPDKDEPDSPT 1461 (1822)
Q Consensus 1383 ~~~~lW~pLL~~Ls~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~-~VLfPlfd~l~~~~~~~~~~~~~~~~ 1461 (1822)
.|..+|-.+-.-|..+...+..+|+--|+..|-++-..+-. ..+.+..=|. +.|-|+-..+...
T Consensus 1130 ~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle--~eEL~~f~FQkefLkPfe~im~~s------------- 1194 (1780)
T PLN03076 1130 VWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLE--REELANYNFQNEFMKPFVIVMRKS------------- 1194 (1780)
T ss_pred ehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcc--hhhhhchhHHHHHHHHHHHHHHhc-------------
Confidence 57889988888889986666688999999987665544322 1222333344 3455555445421
Q ss_pred CCCCCccccccHHHhHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHhhCCCCC---H
Q 000232 1462 SHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLS---Q 1538 (1822)
Q Consensus 1462 ~~~~~~~~~~W~~eT~~laL~~lv~lf~~yf~~l~~~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll~~~~~~f~---~ 1538 (1822)
.. .+-+-++++.+..+...+.+.+..=|+.++.+|..-...+++.|.+.|...++.++...-+.++ .
T Consensus 1195 -----~~-----~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~ 1264 (1780)
T PLN03076 1195 -----NA-----VEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETET 1264 (1780)
T ss_pred -----Cc-----hHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccch
Confidence 11 2556677788887777888888889999999999999999999999999999988876555444 4
Q ss_pred HHHHHHHHHHHHHHhhc
Q 000232 1539 DEWREILLALKETTAST 1555 (1822)
Q Consensus 1539 ~~W~~i~~~l~~~f~~T 1555 (1822)
+.-..++++|.+-.+..
T Consensus 1265 ~~F~DlV~cL~~Fa~q~ 1281 (1780)
T PLN03076 1265 TTFTDCVNCLIAFTNSR 1281 (1780)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 66666777776655444
No 17
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=92.60 E-value=53 Score=44.73 Aligned_cols=130 Identities=15% Similarity=0.263 Sum_probs=97.0
Q ss_pred HHhh-ccCChHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhHHhhhhhccccCCCCCCCCCCCCCCCCCCccccccH
Q 000232 1395 LSKL-TSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWD 1473 (1822)
Q Consensus 1395 Ls~l-~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 1473 (1822)
+.++ .+|.+.|||.+||..+=.++..+|+.++.+ +..+|--+.+.++.
T Consensus 574 l~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~e-----L~~~L~il~eRl~n-------------------------- 622 (1233)
T KOG1824|consen 574 LQRLKATDSDQEVKERAISCMGQIIANFGDFLGNE-----LPRTLPILLERLGN-------------------------- 622 (1233)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhh-----hHHHHHHHHHHHhc--------------------------
Confidence 4445 478899999999999999999999655442 22233334454543
Q ss_pred HHhHHHHHHHHHHHHHhhhc-hhhhhHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHH
Q 000232 1474 SETAAIGAECLVDIFICFFD-VVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREILLALKETT 1552 (1822)
Q Consensus 1474 ~eT~~laL~~lv~lf~~yf~-~l~~~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll~~~~~~f~~~~W~~i~~~l~~~f 1552 (1822)
.-|+.-|.+.++.++..=.+ ++.+.+..++..+..+.+..+..+-......+..|+..-+..++.+..+.+..-+-.+.
T Consensus 623 EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Li 702 (1233)
T KOG1824|consen 623 EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLI 702 (1233)
T ss_pred hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhh
Confidence 25888888888888776554 34567888888888888888888888888999999999999999998888876665544
Q ss_pred hhc
Q 000232 1553 AST 1555 (1822)
Q Consensus 1553 ~~T 1555 (1822)
..|
T Consensus 703 ses 705 (1233)
T KOG1824|consen 703 SES 705 (1233)
T ss_pred hHH
Confidence 444
No 18
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.29 E-value=59 Score=42.51 Aligned_cols=126 Identities=11% Similarity=0.095 Sum_probs=87.6
Q ss_pred ccchHHHHHHHHhhcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhchhhhhchhhhhhhHHHHH
Q 000232 1155 RVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFV 1234 (1822)
Q Consensus 1155 r~FsLqKLveVa~~Nm~Rirl~W~~IW~~L~~hf~~vg~h~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe 1234 (1822)
.-|.+.||+-++...+. -.++...-.+...+.+--.|+|..++..|+..|-.++ ..|+. ..++.+..
T Consensus 54 ~~~~~Krl~yl~l~~~~---~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~-----~~l~~~v~ 120 (526)
T PF01602_consen 54 KDLELKRLGYLYLSLYL---HEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMA-----EPLIPDVI 120 (526)
T ss_dssp SSHHHHHHHHHHHHHHT---TTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHH-----HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh---hcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchh-----hHHHHHHH
Confidence 45677777766654332 2344555666777777777899999888877776653 23322 34455555
Q ss_pred HHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHH
Q 000232 1235 IIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKI 1297 (1822)
Q Consensus 1235 ~im~~~~~~eIre~IL~cl~qml~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I 1297 (1822)
.++. ++++-||...+-|+.++.....+.+..+| +..+.....|+++.++..|...+..|
T Consensus 121 ~ll~-~~~~~VRk~A~~~l~~i~~~~p~~~~~~~---~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 121 KLLS-DPSPYVRKKAALALLKIYRKDPDLVEDEL---IPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHH-SSSHHHHHHHHHHHHHHHHHCHCCHHGGH---HHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHhc-CCchHHHHHHHHHHHHHhccCHHHHHHHH---HHHHhhhccCCcchhHHHHHHHHHHH
Confidence 5553 66789999999999999999888776664 55565566777888888888888777
No 19
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.64 E-value=33 Score=47.61 Aligned_cols=134 Identities=18% Similarity=0.254 Sum_probs=95.6
Q ss_pred hHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhHHhhhhhccccCCCCCCCCCCCCCCCCCC
Q 000232 1387 FWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPL 1466 (1822)
Q Consensus 1387 lW~pLL~~Ls~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~ 1466 (1822)
-|=-||.-|-....++.+..|..|+-+|+.+....|..+.+. -..+.|+|..-...
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~------~~~l~~lf~q~~~d------------------ 170 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH------LDDLLRLFSQTMTD------------------ 170 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh------HHHHHHHHHHhccC------------------
Confidence 588899999999999999999999999999999999999862 23466777654321
Q ss_pred ccccccHHHhHHHHHHHHHHHH---HhhhchhhhhHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHhhCCCCCHHHHHH
Q 000232 1467 SEGSTWDSETAAIGAECLVDIF---ICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWRE 1543 (1822)
Q Consensus 1467 ~~~~~W~~eT~~laL~~lv~lf---~~yf~~l~~~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll~~~~~~f~~~~W~~ 1543 (1822)
.... ..-+.++|+..++... +.-.+.+..+++.++..+..+++.+++.-|....++|-.|+....+-|. .+...
T Consensus 171 ~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~-~~l~~ 247 (1075)
T KOG2171|consen 171 PSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLR-PHLSQ 247 (1075)
T ss_pred Ccch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHH-HHHHH
Confidence 1111 3456666666655443 1223345678999999999999999999999999999888876554443 33333
Q ss_pred HHHH
Q 000232 1544 ILLA 1547 (1822)
Q Consensus 1544 i~~~ 1547 (1822)
|+..
T Consensus 248 ii~~ 251 (1075)
T KOG2171|consen 248 IIQF 251 (1075)
T ss_pred HHHH
Confidence 4333
No 20
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.45 E-value=33 Score=44.92 Aligned_cols=294 Identities=16% Similarity=0.204 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhccccc--ccch-hhHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 000232 1131 EAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRI--RLVW-SRMWNVLSDFFVSVGLSENLSVAIFVMDSL 1207 (1822)
Q Consensus 1131 ~Ai~~Fv~ALc~vS~eEl~s~~~Pr~FsLqKLveVa~~Nm~Ri--rl~W-~~IW~~L~~hf~~vg~h~n~~va~~AiDsL 1207 (1822)
..+..+++.|+++- ..|.-|...+++.+... ..+. .... ..+-+.+...+. +.+..|.+.|+..+
T Consensus 188 ~~~~~~~~~L~~~l-------~~~~~~~q~~il~~l~~-~~~~~~~~~~~~~~i~~l~~~l~----s~~~~V~~e~~~~i 255 (526)
T PF01602_consen 188 SLIPKLIRILCQLL-------SDPDPWLQIKILRLLRR-YAPMEPEDADKNRIIEPLLNLLQ----SSSPSVVYEAIRLI 255 (526)
T ss_dssp THHHHHHHHHHHHH-------TCCSHHHHHHHHHHHTT-STSSSHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhhcc-------cccchHHHHHHHHHHHh-cccCChhhhhHHHHHHHHHHHhh----ccccHHHHHHHHHH
Confidence 44666777777653 12344555555555431 1111 1111 123333333333 55677887777666
Q ss_pred HHHHHHHhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHHHH
Q 000232 1208 RQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIV 1287 (1822)
Q Consensus 1208 rqLs~kfLe~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~cl~qml~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV 1287 (1822)
..+ ....+ .-..+..++..++. +.+..+|-.+++++.++...+...+. ....++..+. .+++..+.
T Consensus 256 ~~l----~~~~~-----~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~~~~l~---~~~d~~Ir 321 (526)
T PF01602_consen 256 IKL----SPSPE-----LLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQSNPPAVF-NQSLILFFLL---YDDDPSIR 321 (526)
T ss_dssp HHH----SSSHH-----HHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCCHCHHHHG-THHHHHHHHH---CSSSHHHH
T ss_pred HHh----hcchH-----HHHhhHHHHHHHhh-cccchhehhHHHHHHHhhcccchhhh-hhhhhhheec---CCCChhHH
Confidence 543 11111 23456677777775 77889999999999999988866666 4444433332 34567888
Q ss_pred HHHHHHHHHHHhcccCcccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCC
Q 000232 1288 LLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPP 1367 (1822)
Q Consensus 1288 ~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~d~L~~~~~~~~~~~~~~~~~~~p 1367 (1822)
..+.+++..++++ .++...+..|..|+....+.++.-.++..+..|+......
T Consensus 322 ~~~l~lL~~l~~~----------~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~----------------- 374 (526)
T PF01602_consen 322 KKALDLLYKLANE----------SNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPD----------------- 374 (526)
T ss_dssp HHHHHHHHHH--H----------HHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSS-----------------
T ss_pred HHHHHHHhhcccc----------cchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCch-----------------
Confidence 9999998877754 6788899999999854445566666666666665544210
Q ss_pred CCCCCCcccCCCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhHHhhhhhccc
Q 000232 1368 VNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCD 1447 (1822)
Q Consensus 1368 ~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPlfd~l~~ 1447 (1822)
.-|+ +..+-++.......|+..+++.+.+++..+...- .. ++.-+++.+..
T Consensus 375 ------------------~~~~--v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~-----~~----~l~~L~~~l~~ 425 (526)
T PF01602_consen 375 ------------------AEWY--VDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR-----EK----ILKKLIELLED 425 (526)
T ss_dssp ------------------HHHH--HHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH-----HH----HHHHHHHHHTS
T ss_pred ------------------HHHH--HHHHHHhhhhccccccchHHHHHHHHhhcChhhh-----HH----HHHHHHHHHHH
Confidence 1132 2334444333445678888888888887653321 11 23333333322
Q ss_pred cCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHHHHHHHHHhhhchhhh--hHHHHHHHHHHhhcCCCcchhHHHHHHH
Q 000232 1448 KKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRS--QLPGVVSILTGFIRSPIQGPASTGVAAL 1525 (1822)
Q Consensus 1448 ~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~laL~~lv~lf~~yf~~l~~--~w~~lL~lL~~~i~~~~~~ia~~g~~~L 1525 (1822)
.. + .+ ++..++-++..|-+.... ....++..+.+-...++..+-.....++
T Consensus 426 ~~----------------~-------~~----~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~ 478 (526)
T PF01602_consen 426 IS----------------S-------PE----ALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTAL 478 (526)
T ss_dssp SS----------------S-------HH----HHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred hh----------------H-------HH----HHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 00 0 12 234444455555444433 5777777777777667676766777777
Q ss_pred HHHHHhhC
Q 000232 1526 LHLAGELG 1533 (1822)
Q Consensus 1526 ~~Ll~~~~ 1533 (1822)
-.+.....
T Consensus 479 ~Kl~~~~~ 486 (526)
T PF01602_consen 479 AKLFKRNP 486 (526)
T ss_dssp HHHHHHSC
T ss_pred HHHHhhCC
Confidence 77665443
No 21
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=88.77 E-value=84 Score=40.47 Aligned_cols=273 Identities=16% Similarity=0.215 Sum_probs=137.1
Q ss_pred hhHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHHhchhhh-hchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHH
Q 000232 1178 SRMWNVLSDFFVSVGLSE-NLSVAIFVMDSLRQLAMKFLEREEL-ANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQ 1255 (1822)
Q Consensus 1178 ~~IW~~L~~hf~~vg~h~-n~~va~~AiDsLrqLs~kfLe~eEL-~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~cl~q 1255 (1822)
..+-++|...+..++-+| |+...-|..++|-- .+|+.....- .--.|-..++-||..|++..- .|.-.-|.+-+.+
T Consensus 66 ~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~-lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV-~EF~PYvfQIla~ 143 (435)
T PF03378_consen 66 VEILQHLTAILKEVSKNPSNPRFNHYLFESIGA-LIRFVCEADPEAVSQFEEALFPPFQEILQQDV-QEFIPYVFQILAQ 143 (435)
T ss_dssp HHHHHHHHHHHHHHHTS---HHHHHHHHHHHHH-HHHHS-GGGHH---HHHHHHHHHHHHHHHTT--TTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHH-HHHhccCCChhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 445566666676776555 77777777777764 3555432211 112567778899999886543 4666778888999
Q ss_pred HHHhhc-cccccCcHHHHHHHHHhhcc----chHHHHHHHHHHHHHHHhcccCcccccccchHHHHHHHHHHHHcCCCCc
Q 000232 1256 MVLSRV-SNVKSGWKSVFSIFTAAAAD----ERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNS 1330 (1822)
Q Consensus 1256 ml~~~~-~~IkSGWk~IF~iL~~aa~~----~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~ 1330 (1822)
|++.+. ..+-.....+|..|-...-- +-+.+|++ ++-+++..-..+.. .+...-+...+-+-..++.+
T Consensus 144 Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrL----L~a~i~k~~~~i~~--~~~l~~iLgvFQkLi~sk~~- 216 (435)
T PF03378_consen 144 LLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRL----LQAYIKKDPSFIVA--NNQLEPILGVFQKLIASKAN- 216 (435)
T ss_dssp HHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHH----HHHHHHHHGGG------S-CHHHHHHHHHHHT-TTC-
T ss_pred HHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHH----HHHHHHhCchhhcc--hhhHHHHHHHHHHHHCCCCc-
Confidence 999987 66666666777776665432 22333332 33333322222210 23333333333333333321
Q ss_pred cccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHHhhccCChHHHHHHH
Q 000232 1331 DVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSS 1410 (1822)
Q Consensus 1331 niSL~AI~~L~~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~eVR~~A 1410 (1822)
...+.++|..+..++....+ ..-...+|..+|.+|..-=+ ....++=
T Consensus 217 --D~~gF~LL~~iv~~~p~~~l----------------------------~~yl~~I~~lll~RLq~skT---~kf~~~f 263 (435)
T PF03378_consen 217 --DHYGFDLLESIVENLPPEAL----------------------------EPYLKQIFTLLLTRLQSSKT---EKFVKRF 263 (435)
T ss_dssp --HHHHHHHHHHHHHHS-HHHH----------------------------GGGHHHHHHHHHHHHHHC-----HHHHHHH
T ss_pred --chHHHHHHHHHHHHCCHHHH----------------------------HHHHHHHHHHHHHHHhhCCc---HHHHHHH
Confidence 12344455544443321000 01234578888888765312 2222222
Q ss_pred HHHHHHHHHhcCC--------CCChhHHHHHHHHhHHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHH
Q 000232 1411 LEVLFNILKDHGH--------LFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAE 1482 (1822)
Q Consensus 1411 lqtLF~iL~~~G~--------~f~~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~laL~ 1482 (1822)
+..+.-+...||. ..-+..|..++.++++|-++.+... .-...+.=
T Consensus 264 v~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~--------------------------~erKi~~v 317 (435)
T PF03378_consen 264 VVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGP--------------------------IERKICAV 317 (435)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SH--------------------------HHHHHHHH
T ss_pred HHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCc--------------------------chhhHHHH
Confidence 2222222223332 2245678899999999977776431 11233334
Q ss_pred HHHHHHHh---hhchhhhhHHHHHHHHHHhhcCCCcchh
Q 000232 1483 CLVDIFIC---FFDVVRSQLPGVVSILTGFIRSPIQGPA 1518 (1822)
Q Consensus 1483 ~lv~lf~~---yf~~l~~~w~~lL~lL~~~i~~~~~~ia 1518 (1822)
|++++... +.+....+|..+++-+...+..+.+.-+
T Consensus 318 GltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~p~~~~~ 356 (435)
T PF03378_consen 318 GLTKLLCESPAFLSEYSQLWPPLLEALLKLLERPPEASA 356 (435)
T ss_dssp HHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHTTSTT-S
T ss_pred HHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcCCccccc
Confidence 45555442 3333456899988888888877655433
No 22
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=85.11 E-value=39 Score=40.42 Aligned_cols=159 Identities=17% Similarity=0.261 Sum_probs=99.9
Q ss_pred ChHHHHHHHHHHHHHHHhhcccccc-CcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCcccccccchHHHHHHHH
Q 000232 1242 SAEIRELIIRCISQMVLSRVSNVKS-GWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCL 1320 (1822)
Q Consensus 1242 ~~eIre~IL~cl~qml~~~~~~IkS-GWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL 1320 (1822)
....|..+.+-+..+++.+...+++ |=..|.+++..+-++++|+.+..+|+.++.|++.|- +. +...++-+++
T Consensus 95 ~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~--~~----~~~e~lFd~~ 168 (262)
T PF14500_consen 95 PQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD--IS----EFAEDLFDVF 168 (262)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc--cc----hhHHHHHHHh
Confidence 3578999999999999998888754 667888999999999999999999999999988763 22 3344444444
Q ss_pred HHH-----HcCCCCc-cccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHH
Q 000232 1321 LTF-----TNSRFNS-DVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTG 1394 (1822)
Q Consensus 1321 ~~F-----~~~~~d~-niSL~AI~~L~~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~ 1394 (1822)
.-| .-.+.|+ .|+- -++-..+-..+. ....+..+-+|+|..
T Consensus 169 ~cYFPI~F~pp~~dp~~IT~--edLk~~L~~cl~-------------------------------s~~~fa~~~~p~Lle 215 (262)
T PF14500_consen 169 SCYFPITFRPPPNDPYGITR--EDLKRALRNCLS-------------------------------STPLFAPFAFPLLLE 215 (262)
T ss_pred hheeeeeeeCCCCCCCCCCH--HHHHHHHHHHhc-------------------------------CcHhhHHHHHHHHHH
Confidence 433 1111111 2222 221111111121 111233344554433
Q ss_pred HHhhccCChHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhHHhhh
Q 000232 1395 LSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIF 1442 (1822)
Q Consensus 1395 Ls~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPlf 1442 (1822)
++..+ -+.|+.-+++||-.++..||..==.+.|..+++.+=+-++
T Consensus 216 --KL~s~-~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~lk~Eil 260 (262)
T PF14500_consen 216 --KLDST-SPSVKLDSLQTLKACIENYGADSLSPHWSTIWNALKFEIL 260 (262)
T ss_pred --HHcCC-CcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHc
Confidence 33322 3459999999999999999975445678777775544443
No 23
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=82.11 E-value=28 Score=45.12 Aligned_cols=141 Identities=17% Similarity=0.200 Sum_probs=78.8
Q ss_pred cccCCHHHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccccchhhHHHHHHHHH--HHhcCCCChHHHHH
Q 000232 1125 SQRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFF--VSVGLSENLSVAIF 1202 (1822)
Q Consensus 1125 S~~L~~~Ai~~Fv~ALc~vS~eEl~s~~~Pr~FsLqKLveVa~~Nm~Rirl~W~~IW~~L~~hf--~~vg~h~n~~va~~ 1202 (1822)
-..++.+++..+|..||..-.-. .+.+-.-=+..|+=|-+..-.-| ..|.+.+ ..-...++..+.+=
T Consensus 207 y~~iP~~sl~~~i~vLCsi~~~~----------~l~~~~w~~m~nL~~S~~g~~~i-~~L~~iL~~~~~~~~~~~~~lRG 275 (464)
T PF11864_consen 207 YGDIPSESLSPCIEVLCSIVNSV----------SLCKPSWRTMRNLLKSHLGHSAI-RTLCDILRSPDPQNKRDINVLRG 275 (464)
T ss_pred cCcCChHHHHHHHHHHhhHhccc----------ccchhHHHHHHHHHcCccHHHHH-HHHHHHHcccCccccccHHHHhh
Confidence 47889999999999999873211 12222212333333322211111 2333333 12222345667778
Q ss_pred HHHHHHHHHHHHhchhhhhchhhhh-hhHHHHHHHHhccCChHHHHHHHHHHHHHH-Hhhcccc-ccCcHHHHHHHHHh
Q 000232 1203 VMDSLRQLAMKFLEREELANYNFQN-EFLRPFVIIMQKSGSAEIRELIIRCISQMV-LSRVSNV-KSGWKSVFSIFTAA 1278 (1822)
Q Consensus 1203 AiDsLrqLs~kfLe~eEL~~f~FQ~-~fLkPfe~im~~~~~~eIre~IL~cl~qml-~~~~~~I-kSGWk~IF~iL~~a 1278 (1822)
||..|+.+..+.-+ ...+.-.|-- -+|..|...+.... .-|---|+.++..++ ...+..+ ...|..++.++..+
T Consensus 276 Av~~l~~ll~~~~~-~~~~~l~~~~~~vl~sl~~al~~~~-~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~ 352 (464)
T PF11864_consen 276 AVFFLRMLLWGSGE-QGYPSLPFSPSSVLPSLLNALKSNS-PRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEI 352 (464)
T ss_pred HHHHHHHHHhcccc-CCcceecccHHHHHHHHHHHHhCCC-CeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHH
Confidence 88888877555411 2222222221 36666777776433 234445777888888 6677665 45999999999865
No 24
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=80.44 E-value=81 Score=36.43 Aligned_cols=179 Identities=16% Similarity=0.129 Sum_probs=101.8
Q ss_pred ccchHHHHHHHHhhcccccccchhhHHHHHH---HHHHHhcCCCChHHHHHHHHHHHHHHHHHhchhhhhchhhhhhhHH
Q 000232 1155 RVFSLTKLVEIAHYNMNRIRLVWSRMWNVLS---DFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLR 1231 (1822)
Q Consensus 1155 r~FsLqKLveVa~~Nm~Rirl~W~~IW~~L~---~hf~~vg~h~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLk 1231 (1822)
|.=.|++|..++..| ........++..+. .-+.......+..|+..|+..+..++..+-.. +.. +-..++.
T Consensus 24 r~~al~~L~~l~~~~--~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~--~~~--~~~~~l~ 97 (228)
T PF12348_consen 24 RVEALQKLRSLIKGN--APEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH--FEP--YADILLP 97 (228)
T ss_dssp HHHHHHHHHHHHHH---B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG--GHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh--HHH--HHHHHHH
Confidence 344567777777777 22233345555555 33333333345678999999888887654332 221 1233444
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhccc---Cccccc
Q 000232 1232 PFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYF---PHITET 1308 (1822)
Q Consensus 1232 Pfe~im~~~~~~eIre~IL~cl~qml~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l---~~l~~~ 1308 (1822)
++.... ......|++...+|+..|++... .+=+.++.++..+..++++.+-..+.+.+..++..+- ..+.
T Consensus 98 ~Ll~~~-~~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~-- 170 (228)
T PF12348_consen 98 PLLKKL-GDSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ-- 170 (228)
T ss_dssp HHHHGG-G---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG---
T ss_pred HHHHHH-ccccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc--
Confidence 443322 23356899999999999998665 1226669999999988998888888888888887765 2232
Q ss_pred ccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHh
Q 000232 1309 ESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKL 1347 (1822)
Q Consensus 1309 ~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~d~L 1347 (1822)
....+..++.++..+.... +.++=-.|-..||.+....
T Consensus 171 ~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 171 KSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHF 208 (228)
T ss_dssp -HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHC
Confidence 1233678889998887543 3555556666676665443
No 25
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.04 E-value=3.1e+02 Score=39.58 Aligned_cols=250 Identities=16% Similarity=0.201 Sum_probs=137.7
Q ss_pred CccchHHHHHHHHhhcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhch----------hhhhch
Q 000232 1154 PRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLER----------EELANY 1223 (1822)
Q Consensus 1154 Pr~FsLqKLveVa~~Nm~Rirl~W~~IW~~L~~hf~~vg~h~n~~va~~AiDsLrqLs~kfLe~----------eEL~~f 1223 (1822)
=|+=+|+-++.|....-.-....|..|.+.|...+ ..+..+...++..+-++||-++.-||.. +-+.+|
T Consensus 858 vr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~-d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~~f 936 (1610)
T KOG1848|consen 858 VRISSLEALVSILETVGEHLLHGWQSVFEMLRSAT-DFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLLVF 936 (1610)
T ss_pred eeHHHHHHHHHHHhccchhhccccHHHHHHHHHHh-hccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHHHH
Confidence 36777888888776665555566888888877332 3333335678899999999888888863 444555
Q ss_pred hhhhhhH-------------HHHHHH-HhccCChHHHHHHHHHHHHHHHhhcccc--ccCcHHHHHHHHHhhccchHHHH
Q 000232 1224 NFQNEFL-------------RPFVII-MQKSGSAEIRELIIRCISQMVLSRVSNV--KSGWKSVFSIFTAAAADERKNIV 1287 (1822)
Q Consensus 1224 ~FQ~~fL-------------kPfe~i-m~~~~~~eIre~IL~cl~qml~~~~~~I--kSGWk~IF~iL~~aa~~~~~~iV 1287 (1822)
.-|++=+ .-|... |..+.+..-..+.++.+.. .+..+-+ --=|-.+|.-|.-.+.|...++-
T Consensus 937 s~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~~~~~l~e~lwi~ll~~L~~~~~dsr~eVR 1014 (1610)
T KOG1848|consen 937 SRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMKSKEILPEVLWIMLLVHLADLCEDSRAEVR 1014 (1610)
T ss_pred HhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--cccchhhhhhHHHHHHHHHHHHHhccchHHHh
Confidence 5565311 011111 1111111111111111111 0000000 11477888888877888888888
Q ss_pred HHHHHHHHHHHhcccCcccccccchHHHHHHHHHH-HH-cCCCCccccHH------------HHHHHHHHHHHhhcCCcc
Q 000232 1288 LLAFETMEKIVREYFPHITETESTTFTDCVKCLLT-FT-NSRFNSDVCLN------------AIAFLRFCAVKLADGGLV 1353 (1822)
Q Consensus 1288 ~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~-F~-~~~~d~niSL~------------AI~~L~~~~d~L~~~~~~ 1353 (1822)
+-|-+++=.|++-|-+.++ .++..+|+--... .- +++. ++.+-- .+=.+..+++-..+
T Consensus 1015 ngAvqtlfri~~Shg~~l~---~~aW~s~~w~vi~pLLd~~~~-q~~~ewngkeiqkqwtet~~ltisgIaklf~e---- 1086 (1610)
T KOG1848|consen 1015 NGAVQTLFRIFNSHGSKLG---TNAWASCCWLVIMPLLDSQPI-QNVSEWNGKEIQKQWTETSCLTISGIAKLFSE---- 1086 (1610)
T ss_pred hhHHHHHHHHHhhhcccCC---hhHHHHHHHHHHHHHhccccc-cchhhhcchhHhhhhhhhhhhhHHHHHHHHHH----
Confidence 8889999899998887776 3455554321111 00 1110 110000 00000000000000
Q ss_pred cccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhcC--CCCChhHHH
Q 000232 1354 CNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHG--HLFPRQFWM 1431 (1822)
Q Consensus 1354 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~eVR~~AlqtLF~iL~~~G--~~f~~~~W~ 1431 (1822)
+. ..+..-.+....|--+|.=+-++..|..+|+..+||..++..+..+. +.++..+-.
T Consensus 1087 -----------------~f---k~llnln~f~~vwe~ll~flkrl~s~~s~e~slsai~~~qell~sii~~~~ln~~~~~ 1146 (1610)
T KOG1848|consen 1087 -----------------NF---KLLLNLNGFLDVWEELLQFLKRLHSDISPEISLSAIKALQELLFSIIEFGKLNATFTL 1146 (1610)
T ss_pred -----------------HH---HHHHhcccHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhhccccchHHH
Confidence 00 00112234667899999999999999999999999999999998764 345555444
Q ss_pred HHH
Q 000232 1432 GVY 1434 (1822)
Q Consensus 1432 ~i~ 1434 (1822)
.|.
T Consensus 1147 k~n 1149 (1610)
T KOG1848|consen 1147 KIN 1149 (1610)
T ss_pred Hhh
Confidence 444
No 26
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.03 E-value=4e+02 Score=37.78 Aligned_cols=333 Identities=16% Similarity=0.218 Sum_probs=178.5
Q ss_pred ccCCHHHHHHHHHHHHHhchhhcCCCCCCccchHHHHHHHHhhcccccccchhhHHHHHHHHHHHhcCCCChHHHHHHHH
Q 000232 1126 QRLNSEAIVAFVKALCKVSISELQSPTDPRVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMD 1205 (1822)
Q Consensus 1126 ~~L~~~Ai~~Fv~ALc~vS~eEl~s~~~Pr~FsLqKLveVa~~Nm~Rirl~W~~IW~~L~~hf~~vg~h~n~~va~~AiD 1205 (1822)
..|+.+.-...-..|...-..|-..+ =|-=.-+-+.||+..-.+- .|+ -+.+++.+...++|...+..|+-
T Consensus 70 ~~l~~e~~~siks~lL~~~~~E~~~~--vr~k~~dviAeia~~~l~e---~WP----ell~~L~q~~~S~~~~~rE~al~ 140 (1075)
T KOG2171|consen 70 SRLSAEVQQSIKSSLLEIIQSETEPS--VRHKLADVIAEIARNDLPE---KWP----ELLQFLFQSTKSPNPSLRESALL 140 (1075)
T ss_pred hcCCHHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHhcccc---chH----HHHHHHHHHhcCCCcchhHHHHH
Confidence 66666655555555555443332210 0211122234555433332 566 45566677777888888888887
Q ss_pred HHHHHHHHHhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhc------cccccCcHHHHHHHHHhh
Q 000232 1206 SLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRV------SNVKSGWKSVFSIFTAAA 1279 (1822)
Q Consensus 1206 sLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~cl~qml~~~~------~~IkSGWk~IF~iL~~aa 1279 (1822)
.|..+..-|-+.. . .+=.+|+.=|..-|....+. ||-..++.+..++.-.. +..+.-=+.++.++...-
T Consensus 141 il~s~~~~~~~~~--~--~~~~~l~~lf~q~~~d~s~~-vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i 215 (1075)
T KOG2171|consen 141 ILSSLPETFGNTL--Q--PHLDDLLRLFSQTMTDPSSP-VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVI 215 (1075)
T ss_pred HHHhhhhhhcccc--c--hhHHHHHHHHHHhccCCcch-HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhh
Confidence 7877644333221 1 11236777777777766677 99999999998887653 223344456777777777
Q ss_pred ccchHHHHHHHHHHHHHHHhcccCcccccccchHHHHHHHHHHHHcCC-CCccccHHHHHHHHHHHHHhhcCCcccccCC
Q 000232 1280 ADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSR-FNSDVCLNAIAFLRFCAVKLADGGLVCNEKG 1358 (1822)
Q Consensus 1280 ~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~-~d~niSL~AI~~L~~~~d~L~~~~~~~~~~~ 1358 (1822)
.+.+......+|+.+.-+..-.-..+ .+.+.+.|..-.+.++++ .+..+--.|++++-.++.+-..+ +...
T Consensus 216 ~~~d~~~a~~~l~~l~El~e~~pk~l----~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~---~k~~- 287 (1075)
T KOG2171|consen 216 QDGDDDAAKSALEALIELLESEPKLL----RPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAM---CKKL- 287 (1075)
T ss_pred hccchHHHHHHHHHHHHHHhhchHHH----HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHH---hhhc-
Confidence 76777778888998865543322222 245555555555555443 34445667888877776651111 1000
Q ss_pred CCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHHhhccC------------ChHHHHHHHHHHHHHHHHhcCCCCC
Q 000232 1359 SVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSD------------SRSTIRKSSLEVLFNILKDHGHLFP 1426 (1822)
Q Consensus 1359 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d------------~R~eVR~~AlqtLF~iL~~~G~~f~ 1426 (1822)
... ...+-..+|....+...| +-..--..|.+.|=+.-. .++
T Consensus 288 ~~~----------------------~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~----~L~ 341 (1075)
T KOG2171|consen 288 ALL----------------------GHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLAL----HLG 341 (1075)
T ss_pred hhh----------------------hccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHh----cCC
Confidence 000 000111111111111111 101122333333333222 233
Q ss_pred hhHHHHHHHHhHHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHH-HhHHHHHHHHHHHHHhhhchhhhhHHHHHHH
Q 000232 1427 RQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDS-ETAAIGAECLVDIFICFFDVVRSQLPGVVSI 1505 (1822)
Q Consensus 1427 ~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~-eT~~laL~~lv~lf~~yf~~l~~~w~~lL~l 1505 (1822)
+ +.++- ++||.+..+.. . ..|-. .-..+|+..+++ --.+.+...++++++.
T Consensus 342 g---~~v~p-~~~~~l~~~l~------------------S---~~w~~R~AaL~Als~i~E---Gc~~~m~~~l~~Il~~ 393 (1075)
T KOG2171|consen 342 G---KQVLP-PLFEALEAMLQ------------------S---TEWKERHAALLALSVIAE---GCSDVMIGNLPKILPI 393 (1075)
T ss_pred h---hhehH-HHHHHHHHHhc------------------C---CCHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHH
Confidence 2 11111 45555555443 1 13621 133344444433 3345566789999999
Q ss_pred HHHhhcCCCcchhHHHHHHHHHHHHhhCC
Q 000232 1506 LTGFIRSPIQGPASTGVAALLHLAGELGS 1534 (1822)
Q Consensus 1506 L~~~i~~~~~~ia~~g~~~L~~Ll~~~~~ 1534 (1822)
....++.++.-+-.++++|+.++=..-.+
T Consensus 394 Vl~~l~DphprVr~AA~naigQ~stdl~p 422 (1075)
T KOG2171|consen 394 VLNGLNDPHPRVRYAALNAIGQMSTDLQP 422 (1075)
T ss_pred HHhhcCCCCHHHHHHHHHHHHhhhhhhcH
Confidence 99999999999999999999988664443
No 27
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=70.86 E-value=38 Score=37.96 Aligned_cols=112 Identities=19% Similarity=0.275 Sum_probs=71.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHH
Q 000232 1196 NLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIF 1275 (1822)
Q Consensus 1196 n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~cl~qml~~~~~~IkSGWk~IF~iL 1275 (1822)
|+.|+.-|+-+|.+|+.+|-..-| .+ -|...-+-+..++.||...+.|+.+++....-.++. ..++.++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve--------~~-~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~--~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE--------PY-LPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKG--QLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH--------hH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehh--hhhHHHH
Confidence 456888899999999988754333 11 122222335678999999999999999764443332 1124455
Q ss_pred HHhhccchHHHHHHHHHHHHHHHhcccCcccccccchHHHHHHHHHH
Q 000232 1276 TAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLT 1322 (1822)
Q Consensus 1276 ~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~ 1322 (1822)
. +-.|+++.+...|=..+..+....-+... ...|.+||..|..
T Consensus 70 ~-~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i---~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 70 K-LLVDENPEIRSLARSFFSELLKKRNPNII---YNNFPELISSLNN 112 (178)
T ss_pred H-HHcCCCHHHHHHHHHHHHHHHHhccchHH---HHHHHHHHHHHhC
Confidence 4 34788899999998888877766333332 3455555544443
No 28
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=67.65 E-value=82 Score=36.36 Aligned_cols=105 Identities=15% Similarity=0.209 Sum_probs=67.7
Q ss_pred hhhhHHHHHHHHHHHHcCcccccCcHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000232 425 LRGKILSLELLKVVTDNGGPVWLSNARFLIAIKQFLCLSLLKNSALSVMAVFQLQCSIFMSLLSKYRSGLKAEIGIFFPM 504 (1822)
Q Consensus 425 ~rsk~lsLeLi~~iL~~~g~~f~~~~~~~~~ik~~Lc~~L~~n~~S~~~~vf~lsl~If~~L~~~~r~~LK~Eievfl~~ 504 (1822)
...|.=+|.-|..++..+. --...+.|...+| .+...+.+...+....|...+|.++..|...++.++...++.+++.
T Consensus 21 W~~r~~al~~L~~l~~~~~-~~~~~~~~~~~l~-~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~ 98 (228)
T PF12348_consen 21 WEERVEALQKLRSLIKGNA-PEDFPPDFVECLR-QLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPP 98 (228)
T ss_dssp HHHHHHHHHHHHHHHHH-B------HHHHHHHH----HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-ccccHHHHHHHHH-HhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 4457888999999999882 2223467888888 5556677766666778999999999999999999999999999998
Q ss_pred HHHHHhcCCCCCChHHHHHHHHHHHHHHhCh
Q 000232 505 LVLRVLENVLQPSFVQKMTVLNLLEKISQDS 535 (1822)
Q Consensus 505 i~l~ile~~~~~~~~qk~~vLe~l~~l~~dp 535 (1822)
++.++-+++ .+ -+..+.++|..++..-
T Consensus 99 Ll~~~~~~~---~~-i~~~a~~~L~~i~~~~ 125 (228)
T PF12348_consen 99 LLKKLGDSK---KF-IREAANNALDAIIESC 125 (228)
T ss_dssp HHHGGG------HH-HHHHHHHHHHHHHTTS
T ss_pred HHHHHcccc---HH-HHHHHHHHHHHHHHHC
Confidence 765554421 12 3444566666666543
No 29
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=66.95 E-value=38 Score=37.15 Aligned_cols=136 Identities=15% Similarity=0.195 Sum_probs=83.3
Q ss_pred hhccCChHHHHHHHHHHHHHHHHhcC--CCCChhHHHHHHHHhHHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHH
Q 000232 1397 KLTSDSRSTIRKSSLEVLFNILKDHG--HLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDS 1474 (1822)
Q Consensus 1397 ~l~~d~R~eVR~~AlqtLF~iL~~~G--~~f~~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 1474 (1822)
......+.-=|+.|++-|-+++.... ..++...|..+|+ -||-.++.-+......... ..+.......-+
T Consensus 11 ~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ife-aL~~~i~~Ek~~y~~~~~~------~~s~~~~~~~RL- 82 (155)
T PF11640_consen 11 RLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFE-ALFRCIEKEKEAYSRKKSS------SASTATTAESRL- 82 (155)
T ss_pred HHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHH-HHHHHHHHHHHHHhcCCCc------ccchHHHHHHHH-
Confidence 33445667889999999999998765 8889999999998 7777777654322100000 000000001234
Q ss_pred HhHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHhhcCCC-cchhHHHH---HHHHHHHH--hhCCCCCHHHHH
Q 000232 1475 ETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPI-QGPASTGV---AALLHLAG--ELGSRLSQDEWR 1542 (1822)
Q Consensus 1475 eT~~laL~~lv~lf~~yf~~l~~~w~~lL~lL~~~i~~~~-~~ia~~g~---~~L~~Ll~--~~~~~f~~~~W~ 1542 (1822)
+.|.-+++.+++.....+... ....+++.+..++..++ .-+.-+|. .+|+.+|. .....++..+|.
T Consensus 83 ~~~a~~lR~~ve~~~~~~k~k--t~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~~~~~ehL~~~~W~ 154 (155)
T PF11640_consen 83 SSCASALRLFVEKSNSRLKRK--TVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSYPPHVEHLSPKQWE 154 (155)
T ss_pred HHHHHHHHHHHHHHHhhcccc--hHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCCChHHHHCcHhhcC
Confidence 677888888887776655432 35566666666777766 33444444 44544444 455677888885
No 30
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=65.15 E-value=79 Score=34.98 Aligned_cols=120 Identities=16% Similarity=0.226 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhchhhcCCC---------CCCccchHHHHHHHHhhcccccc------cchhhHHHHHHHHHHHhcCCCCh
Q 000232 1133 IVAFVKALCKVSISELQSP---------TDPRVFSLTKLVEIAHYNMNRIR------LVWSRMWNVLSDFFVSVGLSENL 1197 (1822)
Q Consensus 1133 i~~Fv~ALc~vS~eEl~s~---------~~Pr~FsLqKLveVa~~Nm~Rir------l~W~~IW~~L~~hf~~vg~h~n~ 1197 (1822)
.....+.||.++..+.... ..+|.|+|+-|-.+-..+...+. ..-.-+++.+..++.+.+.+++.
T Consensus 8 a~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~ 87 (168)
T PF12783_consen 8 AFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDF 87 (168)
T ss_pred HHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3456788999984433221 23578999988888776666554 23346678888899998888877
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhchhhhhh-hHHHHHH-HHhccC-ChHHHHHHHHHHHHHH
Q 000232 1198 SVAIFVMDSLRQLAMKFLEREELANYNFQNE-FLRPFVI-IMQKSG-SAEIRELIIRCISQMV 1257 (1822)
Q Consensus 1198 ~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~-fLkPfe~-im~~~~-~~eIre~IL~cl~qml 1257 (1822)
.+-..++..+..|..+|-. . .+.|-+ ||.-+-. ++.... ...-|+.+|+++..+.
T Consensus 88 ~i~~~slri~~~l~~~~~~--~---Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 88 PIFSRSLRIFLTLLSRFRS--H---LKLELEVFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 7777777777777655543 1 122322 2222222 333222 4678888999888765
No 31
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=64.92 E-value=38 Score=41.19 Aligned_cols=65 Identities=25% Similarity=0.421 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCC-CCChhHH--HHHHHHhHHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHH
Q 000232 1403 RSTIRKSSLEVLFNILKDHGH-LFPRQFW--MGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAI 1479 (1822)
Q Consensus 1403 R~eVR~~AlqtLF~iL~~~G~-~f~~~~W--~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~l 1479 (1822)
..+||..|++.+|+++..||. .|+...+ ......-+..+|-..... . ..+....
T Consensus 77 ~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~------------------~-----~~~~~~~ 133 (298)
T PF12719_consen 77 DEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDS------------------E-----NPELQAI 133 (298)
T ss_pred CHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhc------------------C-----CHHHHHH
Confidence 789999999999999999995 5555444 122222333344333220 1 1357778
Q ss_pred HHHHHHHHHHh
Q 000232 1480 GAECLVDIFIC 1490 (1822)
Q Consensus 1480 aL~~lv~lf~~ 1490 (1822)
|.+|+++|+..
T Consensus 134 a~EGl~KLlL~ 144 (298)
T PF12719_consen 134 AVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHhc
Confidence 88888887755
No 32
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.19 E-value=1.3e+02 Score=43.80 Aligned_cols=237 Identities=13% Similarity=0.269 Sum_probs=129.8
Q ss_pred cccccchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhch---hhhhchhhhhhhHHHHHHHHhccCC----h
Q 000232 1171 NRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLER---EELANYNFQNEFLRPFVIIMQKSGS----A 1243 (1822)
Q Consensus 1171 ~Rirl~W~~IW~~L~~hf~~vg~h~n~~va~~AiDsLrqLs~kfLe~---eEL~~f~FQ~~fLkPfe~im~~~~~----~ 1243 (1822)
+.++..|..|+.++ ..++--.+..+...+.+.+-++.....+. .|.. .| .|-++.|+..+.+... .
T Consensus 1063 ~nikSGWk~if~i~----~~aA~~~~~~iv~~~fe~v~~i~~~~f~~~~~~~~~--sf-~d~v~cl~~F~~~~~~~~~s~ 1135 (1514)
T KOG0929|consen 1063 SNIKSGWKNIFKIF----TTAASDSSKNIVELAFETVSKILQELFENVFPQEMD--SF-KDCVKCLEEFTKNLGFPDDSL 1135 (1514)
T ss_pred hhhhhhhhHHHHHH----HHhhccchhhHHHHhHHHHHHHHHHhhhhhchhhhH--HH-HHHHHHHHHHHHhcCCCccch
Confidence 67889999877764 45566666777777766665443332221 1111 12 2456777776654321 1
Q ss_pred HHHHHHHHHHHHHHHh-hcccc-----------ccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCcccccccc
Q 000232 1244 EIRELIIRCISQMVLS-RVSNV-----------KSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETEST 1311 (1822)
Q Consensus 1244 eIre~IL~cl~qml~~-~~~~I-----------kSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~ 1311 (1822)
.--+.+.-|.....+. ..+.+ ..||.+++-.++.+..+....+-..+.+.+-.|+.+|-+.+. ..
T Consensus 1136 ~aI~~lr~ca~k~~e~~~~~~~~~~~~~~~~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~---~~ 1212 (1514)
T KOG0929|consen 1136 NAIRFLRLCALKLAEGVYNEKLKVGKDSEFDVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFS---KE 1212 (1514)
T ss_pred HHHHHHHHHHHHhccccchhhcccccccccccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhcc---HH
Confidence 1222345566555555 22333 359999999999887766666777888888888887765543 12
Q ss_pred hHHHHHH-HHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchh--hH
Q 000232 1312 TFTDCVK-CLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSS--FW 1388 (1822)
Q Consensus 1312 ~f~d~I~-cL~~F~~~~~d~niSL~AI~~L~~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--lW 1388 (1822)
--.++.. |+.=|..-+.+-+.+...=.+.-.|...|..- +. -+ ...+.. .-
T Consensus 1213 ~We~v~~~~fpIF~~~~~~~~~~~~~eW~~tT~~~Al~~~---v~---------------------lf--~~~~~~l~~l 1266 (1514)
T KOG0929|consen 1213 FWEDVFRILFPIFDNVKLDEDESEKDEWLSTTCNHALQAL---VD---------------------LF--TQFFKQLNNL 1266 (1514)
T ss_pred HHHHHHHheeecccccCcccchhhhhHHHHHHHHHHHHHH---HH---------------------HH--HHHHHHHHHH
Confidence 2222222 22223322222222211111111222211100 00 00 000111 11
Q ss_pred H-HHHHHHHhhccCChHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhHHhhhhh
Q 000232 1389 V-PLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNG 1444 (1822)
Q Consensus 1389 ~-pLL~~Ls~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPlfd~ 1444 (1822)
+ .+|.-|..++..+...+-...+..|.+.+...|..|+...|+.+++ .+.-+|+.
T Consensus 1267 L~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~~n~~~fse~~Wde~~~-~~~e~~~~ 1322 (1514)
T KOG0929|consen 1267 LPKVLGLLVGCIKQDNQQLARIGTSCLLQLVSSNGEKFSEEDWDEICN-CILEAFKT 1322 (1514)
T ss_pred HHHHHHHHHHHhcCcchhhHHhHHHHHHHHHHhcccccCHhhHHHHHH-HHHHHHHh
Confidence 2 2333345555566677888889999999999999999999999998 55555554
No 33
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=61.93 E-value=4.4e+02 Score=34.72 Aligned_cols=120 Identities=18% Similarity=0.186 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH-hcCCCCChhHHHHHHHHhHHhhhhhccccCCCCCCCCCCCCCCCCC
Q 000232 1387 FWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILK-DHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSP 1465 (1822)
Q Consensus 1387 lW~pLL~~Ls~l~~d~R~eVR~~AlqtLF~iL~-~~G~~f~~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~~~~ 1465 (1822)
.+--++..|-+......+..|..|+.||=.+=. ..|..+=...|..-+..++-.+++......
T Consensus 287 ~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~---------------- 350 (503)
T PF10508_consen 287 LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGS---------------- 350 (503)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCc----------------
Confidence 333455566666677888999999988743322 122111111233344556666666654310
Q ss_pred CccccccHHHhHHHHHHHHHHHHHhhhc-------hhhhhHHHHH-----H-HHHHhhcCCCcchhHHHHHHHHHHHH
Q 000232 1466 LSEGSTWDSETAAIGAECLVDIFICFFD-------VVRSQLPGVV-----S-ILTGFIRSPIQGPASTGVAALLHLAG 1530 (1822)
Q Consensus 1466 ~~~~~~W~~eT~~laL~~lv~lf~~yf~-------~l~~~w~~lL-----~-lL~~~i~~~~~~ia~~g~~~L~~Ll~ 1530 (1822)
.+..+.++..+..+|...=+ .+...|=..+ . ++..+++||-++|-.++..-|+.|..
T Consensus 351 --------~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 351 --------TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred --------hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 26667777777777643322 2233343221 2 67778888888888888887777765
No 34
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=58.92 E-value=3.7e+02 Score=34.62 Aligned_cols=196 Identities=16% Similarity=0.212 Sum_probs=114.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHH--HHhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhc
Q 000232 1184 LSDFFVSVGLSENLSVAIFVMDSLRQLAM--KFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRV 1261 (1822)
Q Consensus 1184 L~~hf~~vg~h~n~~va~~AiDsLrqLs~--kfLe~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~cl~qml~~~~ 1261 (1822)
+.+.+....-|....=..-|+-.|..+.. .|--+++ +|.+-++.-||. +..+.+.-+|.+.|+.|.+|+.+..
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq----~f~~iL~~l~Ev-L~d~~~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQ----HFAEILLLLLEV-LSDSEDEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHH----HHHHHHHHHHHH-HccchhhHHHHHHHHHHHHHHHhch
Confidence 33444444445444444555444443211 1111222 465555544554 6677788899999999999999999
Q ss_pred cccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCcccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHH
Q 000232 1262 SNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLR 1341 (1822)
Q Consensus 1262 ~~IkSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~ 1341 (1822)
..+...=.....-+--|+.+.++++++.|-+..-.+...|.+. .|......|+.. .|..+.+-+|..+.
T Consensus 363 ~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~------~~I~~i~~~Ilt-----~D~~~~~~~iKm~T 431 (516)
T KOG2956|consen 363 ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPL------QCIVNISPLILT-----ADEPRAVAVIKMLT 431 (516)
T ss_pred HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCch------hHHHHHhhHHhc-----CcchHHHHHHHHHH
Confidence 9887655544444444566778889999988887777776542 233333333333 34556666776665
Q ss_pred HHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhc
Q 000232 1342 FCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDH 1421 (1822)
Q Consensus 1342 ~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~eVR~~AlqtLF~iL~~~ 1421 (1822)
.+...+....+ ..+-=-+.=++...+......||+.|+=-|-.+...-
T Consensus 432 kl~e~l~~EeL--------------------------------~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~v 479 (516)
T KOG2956|consen 432 KLFERLSAEEL--------------------------------LNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRV 479 (516)
T ss_pred HHHhhcCHHHH--------------------------------HHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHH
Confidence 55443321100 0000011222333344566789999998888888877
Q ss_pred C-CCCCh
Q 000232 1422 G-HLFPR 1427 (1822)
Q Consensus 1422 G-~~f~~ 1427 (1822)
| ..+.|
T Consensus 480 G~~~meP 486 (516)
T KOG2956|consen 480 GMEEMEP 486 (516)
T ss_pred hHHhhhh
Confidence 7 55544
No 35
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.31 E-value=6.3e+02 Score=34.47 Aligned_cols=175 Identities=14% Similarity=0.256 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHhcccCcccccccchHHHHHHHHHHHHcCCCCc---cccHHHHHHHHHHHHHhhcCCcccccCCCC
Q 000232 1284 KNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNS---DVCLNAIAFLRFCAVKLADGGLVCNEKGSV 1360 (1822)
Q Consensus 1284 ~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~---niSL~AI~~L~~~~d~L~~~~~~~~~~~~~ 1360 (1822)
+..-..|=+++-.|..=- || .+...++|..|..-+.+.... .-+|.||+|+- ..+....+
T Consensus 104 p~~~s~Aaq~va~IA~~E---lP---~n~wp~li~~lv~nv~~~~~~~~k~~slealGyic---e~i~pevl-------- 166 (859)
T KOG1241|consen 104 PRRPSSAAQCVAAIACIE---LP---QNQWPELIVTLVSNVGEEQASMVKESSLEALGYIC---EDIDPEVL-------- 166 (859)
T ss_pred CCccchHHHHHHHHHHhh---Cc---hhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHH---ccCCHHHH--------
Confidence 344455666666665543 45 588899999998877654333 34677777742 11100000
Q ss_pred CCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhHHh
Q 000232 1361 DGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFP 1440 (1822)
Q Consensus 1361 ~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfP 1440 (1822)
.+.....-+-+..|..+ ..+...||=.|+..|.+.|.--+..|..+.=..++
T Consensus 167 --------------------~~~sN~iLtaIv~gmrk--~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~i------ 218 (859)
T KOG1241|consen 167 --------------------EQQSNDILTAIVQGMRK--EETSAAVRLAALNALYNSLEFTKANFNNEMERNYI------ 218 (859)
T ss_pred --------------------HHHHhHHHHHHHhhccc--cCCchhHHHHHHHHHHHHHHHHHHhhccHhhhcee------
Confidence 00111222233333222 34567899999999999998766666554333222
Q ss_pred hhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHHHHHHHHHhhhchhhh-hHHHHHHHHHHhhcCCCcchhH
Q 000232 1441 IFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRS-QLPGVVSILTGFIRSPIQGPAS 1519 (1822)
Q Consensus 1441 lfd~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~laL~~lv~lf~~yf~~l~~-~w~~lL~lL~~~i~~~~~~ia~ 1519 (1822)
++.+...++ .+| .+-++-|+..++++..-||+.+.+ |.+.++.+-..-|+++++++|.
T Consensus 219 -MqvvcEatq---------------~~d-----~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deVal 277 (859)
T KOG1241|consen 219 -MQVVCEATQ---------------SPD-----EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVAL 277 (859)
T ss_pred -eeeeeeccc---------------CCc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 122222221 112 477889999999999999998875 6677999988899999999998
Q ss_pred HHHHH
Q 000232 1520 TGVAA 1524 (1822)
Q Consensus 1520 ~g~~~ 1524 (1822)
-|++-
T Consensus 278 QaiEF 282 (859)
T KOG1241|consen 278 QAIEF 282 (859)
T ss_pred HHHHH
Confidence 88753
No 36
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=55.43 E-value=37 Score=34.15 Aligned_cols=107 Identities=11% Similarity=0.044 Sum_probs=61.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHHhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhcccccc
Q 000232 1187 FFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKS 1266 (1822)
Q Consensus 1187 hf~~vg~h~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~cl~qml~~~~~~IkS 1266 (1822)
++.+.-.+.+..++..|+..|..++... ++...+-.+..++.++..++.. .+..++...+.++.++.........-
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~~i~~l~~~l~~-~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGN---NDNIQAVVEAGGLPALVQLLKS-EDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCChHHHHHHHhC-CCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3444444566778888888887765431 3333333455788888887764 57899999999999997654322111
Q ss_pred CcHH-HHHHHHHhhccchHHHHHHHHHHHHHH
Q 000232 1267 GWKS-VFSIFTAAAADERKNIVLLAFETMEKI 1297 (1822)
Q Consensus 1267 GWk~-IF~iL~~aa~~~~~~iV~~aF~~l~~I 1297 (1822)
=|+. +...|-....+.+..+.+.+..++..+
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 1111 223333333333455555555555443
No 37
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=55.39 E-value=3.1e+02 Score=33.85 Aligned_cols=149 Identities=12% Similarity=0.198 Sum_probs=92.0
Q ss_pred hhhHHHHH----HHHhccCChHHHH-HHHHHHHHHHHhhccccccCcHHHHHHHH-Hh----hc--cchHHHHHHHHHHH
Q 000232 1227 NEFLRPFV----IIMQKSGSAEIRE-LIIRCISQMVLSRVSNVKSGWKSVFSIFT-AA----AA--DERKNIVLLAFETM 1294 (1822)
Q Consensus 1227 ~~fLkPfe----~im~~~~~~eIre-~IL~cl~qml~~~~~~IkSGWk~IF~iL~-~a----a~--~~~~~iV~~aF~~l 1294 (1822)
+.|..|+. .-+.++ .++.|+ .||.|+..++..-++.+...=..||+.+= .+ .+ ...|+.-..=|+.+
T Consensus 66 ~~~i~~l~~~vL~DY~~~-~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL 144 (319)
T PF08767_consen 66 NNFIPPLLDAVLGDYQNS-VPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLL 144 (319)
T ss_dssp HHTHHHHHHHHHHHHHHS--GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-CccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHH
Confidence 34555543 333333 334443 36788888888877777766666654322 22 11 24678888889999
Q ss_pred HHHHhcccCcccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCc
Q 000232 1295 EKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPD 1374 (1822)
Q Consensus 1295 ~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~~~ 1374 (1822)
+.|+..+|+.+....++.|..+++++ .++....+.+|+-.++..+..+..++....-
T Consensus 145 ~~i~~~~f~~l~~lp~~~f~~~idsi-~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~---------------------- 201 (319)
T PF08767_consen 145 RAINEHCFPALLQLPPEQFKLVIDSI-VWGFKHTNREISETGLNILLELLNNVSKTNP---------------------- 201 (319)
T ss_dssp HHHHHHHTHHHHHS-HHHHHHHHHHH-HHHHTSSSHHHHHHHHHHHHHHHHHHHH-SH----------------------
T ss_pred HHHHHHhHHHHHcCCHHHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHHhcCH----------------------
Confidence 99999877655333378999999999 4455555678998888888777666643100
Q ss_pred ccCCCCcccchhhHHHHHHHHHhhccCC
Q 000232 1375 LQSFSDKDDNSSFWVPLLTGLSKLTSDS 1402 (1822)
Q Consensus 1375 ~~~~~~~~~~~~lW~pLL~~Ls~l~~d~ 1402 (1822)
......+..+++.+|...-.+.+|+
T Consensus 202 ---~~~~~F~~~y~~~il~~if~vltD~ 226 (319)
T PF08767_consen 202 ---EFANQFYQQYYLDILQDIFSVLTDS 226 (319)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 0011235567777877766666654
No 38
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=52.77 E-value=71 Score=32.10 Aligned_cols=110 Identities=19% Similarity=0.129 Sum_probs=68.2
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhHHhhhhhccccCCCCCCCCCCCCCCCCCCccccc
Q 000232 1392 LTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGST 1471 (1822)
Q Consensus 1392 L~~Ls~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1471 (1822)
+..|.+++.+...++|..|+.+|..+-.. .++.+..++..-++|.+-.+... .+
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~-----~~~~~~~~~~~~~i~~l~~~l~~------------------~~--- 62 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAG-----NNDNIQAVVEAGGLPALVQLLKS------------------ED--- 62 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcC-----CHHHHHHHHHCCChHHHHHHHhC------------------CC---
Confidence 44455566677789999999998886653 26677777774555555554331 11
Q ss_pred cHHHhHHHHHHHHHHHHHhhhchhhhhHH-HHHHHHHHhhcCCCcchhHHHHHHHHHHH
Q 000232 1472 WDSETAAIGAECLVDIFICFFDVVRSQLP-GVVSILTGFIRSPIQGPASTGVAALLHLA 1529 (1822)
Q Consensus 1472 W~~eT~~laL~~lv~lf~~yf~~l~~~w~-~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll 1529 (1822)
......|+..+..+-...-.....++. +++..+.+++..++..+.+.++.+|.+|.
T Consensus 63 --~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 63 --EEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred --HHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 244444445555443222122223443 47788888888888888888888888763
No 39
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.78 E-value=9.5e+02 Score=34.46 Aligned_cols=240 Identities=15% Similarity=0.215 Sum_probs=136.0
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccc---cccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCcc
Q 000232 1229 FLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSN---VKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHI 1305 (1822)
Q Consensus 1229 fLkPfe~im~~~~~~eIre~IL~cl~qml~~~~~~---IkSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l 1305 (1822)
.|.||.. ..+.+..|...++.||..++.+++.. ..+--..+|+++..++. +.|.+-..|-..+..|+.+-- ..
T Consensus 97 ~l~~~~~--~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h-~~pkvRk~a~~~i~~VL~~p~-~~ 172 (1176)
T KOG1248|consen 97 ILAPFLT--AESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAH-KKPKVRKAAQRGIAAVLKGPP-FA 172 (1176)
T ss_pred HHHHHHh--hhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHcCCC-CC
Confidence 4445444 23456788889999999999886543 12233456777777764 567777888888888887421 11
Q ss_pred cccc-cchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccc
Q 000232 1306 TETE-STTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDN 1384 (1822)
Q Consensus 1306 ~~~~-~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 1384 (1822)
|..+ +....-.=.||..+..--. .+..-+-+..|..+-+-+..
T Consensus 173 ~~~~HpA~~~vak~cl~~~e~~~~-~a~~t~v~~~L~Ll~~~~~~----------------------------------- 216 (1176)
T KOG1248|consen 173 PDAEHPASLSVAKFCLALIESKLG-SAENTTVLRSLMLLRDVLST----------------------------------- 216 (1176)
T ss_pred ccccchHHHHHHHHHHHHHHhhhc-hHHHHHHHHHHHHHHHhhcc-----------------------------------
Confidence 1000 1222222233333322110 11222222333322222210
Q ss_pred hhhH-HHHHHHHHh----hccCChHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhHHhhhhhccccCCCCCCCCCCC
Q 000232 1385 SSFW-VPLLTGLSK----LTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDS 1459 (1822)
Q Consensus 1385 ~~lW-~pLL~~Ls~----l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~ 1459 (1822)
| .++...+.+ +++-..-.|+..++|+|-+.+..|...++.++-..++. -+ ..+.- ..
T Consensus 217 ---~p~~li~sl~e~lL~i~~~s~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~----al-~~l~p--s~-------- 278 (1176)
T KOG1248|consen 217 ---FPRPLIKSLCEVLLNITTESPVLVLLEVLQCLHSLFKKHPTALAAELNARLLT----AL-MTLSP--SE-------- 278 (1176)
T ss_pred ---CCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH----HH-HHhCC--Cc--------
Confidence 1 245555555 45667789999999999999999888776655444333 22 22211 00
Q ss_pred CCCCCCCccccccHHHhHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHhhCC
Q 000232 1460 PTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGS 1534 (1822)
Q Consensus 1460 ~~~~~~~~~~~~W~~eT~~laL~~lv~lf~~yf~~l~~~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll~~~~~ 1534 (1822)
+...-...|+ .-++-|...+. +..-+..-...++++.++..|...+++++...+..|+..++.....
T Consensus 279 ----~D~~~t~~W~-~v~~~~~~~la---~~q~~~~~~~~~~~~~~~~t~~~s~~~e~~q~a~q~l~~il~~sv~ 345 (1176)
T KOG1248|consen 279 ----NDDLLTVAWL-KVLNEAHDILA---TLQEEKALQALPRLFSLFFTILESLIEELVQAASQSLKEILKESVT 345 (1176)
T ss_pred ----cchHHHHHHH-HHHHHHHHHHH---HhCHHHHHHhhhhhhhHHHHHHhcccHHHHHHHHHHHHHHhcccCc
Confidence 0012235676 33333322222 1222233345889999999999999999999999999999986555
No 40
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=50.36 E-value=94 Score=34.80 Aligned_cols=92 Identities=9% Similarity=0.064 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhHHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHHH
Q 000232 1404 STIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAEC 1483 (1822)
Q Consensus 1404 ~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~laL~~ 1483 (1822)
+.||+.|+-+|-++...|+....+ |-. .++..+.. ++ ..-+..|+..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve~--~~~-------~l~~~L~D-------------------~~-----~~VR~~al~~ 48 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVEP--YLP-------NLYKCLRD-------------------ED-----PLVRKTALLV 48 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHh--HHH-------HHHHHHCC-------------------CC-----HHHHHHHHHH
Confidence 689999999999999999876655 322 22222322 11 2456667777
Q ss_pred HHHHHHhhhchhhhhHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHh
Q 000232 1484 LVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGE 1531 (1822)
Q Consensus 1484 lv~lf~~yf~~l~~~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll~~ 1531 (1822)
+..|..+-+- ..-..++..+..|+..++++|...+..+|.++...
T Consensus 49 Ls~Li~~d~i---k~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 49 LSHLILEDMI---KVKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHcCce---eehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 7777654332 22334445666788999999999999999999987
No 41
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=49.76 E-value=27 Score=27.39 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=21.6
Q ss_pred HHHHHhhccCChHHHHHHHHHHHHHHHH
Q 000232 1392 LTGLSKLTSDSRSTIRKSSLEVLFNILK 1419 (1822)
Q Consensus 1392 L~~Ls~l~~d~R~eVR~~AlqtLF~iL~ 1419 (1822)
+-.|.+++.|+.++||..|+..|-++.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 3445567789999999999999988765
No 42
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=49.73 E-value=9.4e+02 Score=33.79 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=35.2
Q ss_pred HHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHH
Q 000232 1236 IMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTA 1277 (1822)
Q Consensus 1236 im~~~~~~eIre~IL~cl~qml~~~~~~IkSGWk~IF~iL~~ 1277 (1822)
++....+-+|||..+.|+.++|-+.|+.++..-+.++.+|.-
T Consensus 577 L~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~e 618 (1233)
T KOG1824|consen 577 LKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTLPILLE 618 (1233)
T ss_pred HhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 344456889999999999999999999999888888877644
No 43
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=49.11 E-value=1.1e+02 Score=31.07 Aligned_cols=74 Identities=15% Similarity=0.316 Sum_probs=55.3
Q ss_pred hhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhc
Q 000232 1225 FQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVRE 1300 (1822)
Q Consensus 1225 FQ~~fLkPfe~im~~~~~~eIre~IL~cl~qml~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d 1300 (1822)
+-+.+++|....+ ...+..||....+++.++.......+-.--.-||..|.....|.+++ |+.|-+.|..+++|
T Consensus 24 ~l~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~-Vr~~a~~Ld~llkd 97 (97)
T PF12755_consen 24 YLDEILPPVLKCF-DDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDEN-VRSAAELLDRLLKD 97 (97)
T ss_pred HHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh-HHHHHHHHHHHhcC
Confidence 3456777765533 34578999999999999998877766557788999988888887766 66666777665543
No 44
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=48.81 E-value=89 Score=38.58 Aligned_cols=123 Identities=16% Similarity=0.113 Sum_probs=81.4
Q ss_pred HHHHHHHhhccCChHHHHHHHHHHHHHH-HHhcCCCCChhHHHHHHHHhHHhhhhhccccCCCCCCCCCCCCCCCCCCcc
Q 000232 1390 PLLTGLSKLTSDSRSTIRKSSLEVLFNI-LKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSE 1468 (1822)
Q Consensus 1390 pLL~~Ls~l~~d~R~eVR~~AlqtLF~i-L~~~G~~f~~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~~~ 1468 (1822)
||+...-.--.++.|+.|..-+=.++.+ +...|..+. +.-..|++.|.-|.++-+....+
T Consensus 71 ~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~-~~v~~I~~~vf~~Tl~MI~~d~~------------------ 131 (319)
T PF08767_consen 71 PLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQ-PQVPQILEAVFECTLPMINKDFE------------------ 131 (319)
T ss_dssp HHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCC-CCHHHHHHHHHHHHHHHHSSTSS------------------
T ss_pred HHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhhhh------------------
Confidence 4554332222234566666655445444 445666554 34577778788788887754111
Q ss_pred ccccHHHhHHHHHHHHHHHHHhhhchhhh----hHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHhhCC
Q 000232 1469 GSTWDSETAAIGAECLVDIFICFFDVVRS----QLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGS 1534 (1822)
Q Consensus 1469 ~~~W~~eT~~laL~~lv~lf~~yf~~l~~----~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll~~~~~ 1534 (1822)
. -.+-+..=.+.+..+-.++|+.+.. .+..+++.+.|.++.++.+|+..|.+.+..++.....
T Consensus 132 --~-yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 132 --E-YPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp --S-SHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred --h-ChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 1 1366666666666666677777643 5899999999999999999999999999999995544
No 45
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=47.02 E-value=2.5e+02 Score=33.17 Aligned_cols=149 Identities=17% Similarity=0.117 Sum_probs=82.8
Q ss_pred cchhhHHHHHHHHHhhccCC-----hHHHHHHHHH--HHHHHHHhcCCCC--ChhHHHHHHHHhHH--hhhhhccccCCC
Q 000232 1383 DNSSFWVPLLTGLSKLTSDS-----RSTIRKSSLE--VLFNILKDHGHLF--PRQFWMGVYSHVIF--PIFNGVCDKKDM 1451 (1822)
Q Consensus 1383 ~~~~lW~pLL~~Ls~l~~d~-----R~eVR~~Alq--tLF~iL~~~G~~f--~~~~W~~i~~~VLf--Plfd~l~~~~~~ 1451 (1822)
.|..+|-.|+.-+.-+++.. .+.|..-+.+ .+|..+.+||+.| +|..-+.+|-+++- ++|+.+......
T Consensus 58 ~W~eLW~aLlsLl~Fl~~~~~~l~~~~~i~~L~~~vv~l~n~~is~GDtFLPsp~~yDdL~YelVr~~~v~~~~~~~~~~ 137 (237)
T PF08427_consen 58 HWSELWRALLSLLRFLTTYESDLKDSPDIFQLAEQVVNLFNFFISYGDTFLPSPASYDDLFYELVRSGQVFDKFRDMYLR 137 (237)
T ss_pred cHHHHHHHHHHHHHHHHhchhhhhcccChHHHHHHHHHHHHHHHHhccccCCChHHHHhHHHHhHhchHHHHHHHHHHhh
Confidence 58889988877666664332 2344444433 4588888999988 77788888877775 677776543222
Q ss_pred CCCCCCCCCCCCCCCccccccHHHhHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHH-
Q 000232 1452 PDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAG- 1530 (1822)
Q Consensus 1452 ~~~~~~~~~~~~~~~~~~~~W~~eT~~laL~~lv~lf~~yf~~l~~~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll~- 1530 (1822)
..+ +...+.+.+ +.....++..+..+-.||-..+. .|..-- ..=....+++..+....+..|-+
T Consensus 138 ~~~---------~~~~~~~~~-~~~~~~sl~nl~~I~~Hf~~ki~-~~~~~~----~~~~lt~~qV~~VIk~~YdtLsl~ 202 (237)
T PF08427_consen 138 SST---------SSSSEYKDS-SDKLTNSLDNLRSIISHFESKIE-EWSAAN----KKSNLTPEQVLEVIKQNYDTLSLK 202 (237)
T ss_pred ccC---------CCccccccc-hhHHHHHHHHHHHHHHHHHHHHH-HHHhhc----cCCCCCHHHHHHHHHhCccceecc
Confidence 111 011222333 35567788888877766655443 232111 11222334444444444444422
Q ss_pred -----hhCCCCCHHHHHHHHH
Q 000232 1531 -----ELGSRLSQDEWREILL 1546 (1822)
Q Consensus 1531 -----~~~~~f~~~~W~~i~~ 1546 (1822)
.+-+++.|..|.....
T Consensus 203 ~~e~Ld~~ery~E~~~~~~~k 223 (237)
T PF08427_consen 203 LQEGLDQWERYREAPEKSFLK 223 (237)
T ss_pred hhhccccccccccCchHHHHH
Confidence 3445666666654433
No 46
>PLN03205 ATR interacting protein; Provisional
Probab=45.04 E-value=1.6e+02 Score=36.55 Aligned_cols=92 Identities=17% Similarity=0.365 Sum_probs=62.7
Q ss_pred HHHHHHHHhhcccccccchhhHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHH---HhchhhhhchhhhhhhHHHHH
Q 000232 1159 LTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSE-NLSVAIFVMDSLRQLAMK---FLEREELANYNFQNEFLRPFV 1234 (1822)
Q Consensus 1159 LqKLveVa~~Nm~Rirl~W~~IW~~L~~hf~~vg~h~-n~~va~~AiDsLrqLs~k---fLe~eEL~~f~FQ~~fLkPfe 1234 (1822)
|..+.+=..-|..|+.--|.-=|-.|-+..++++... ...|+..|+....-+.|+ +.++|- |. |..++....
T Consensus 347 Lh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssna~~eREk---FG-~~~VfESia 422 (652)
T PLN03205 347 LHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTDAYTARES---FV-SKEVFESIS 422 (652)
T ss_pred HHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccchhHHHHH---hc-chHHHHHHH
Confidence 5566666677889999999999999999999886543 556888888777666554 444443 32 455666666
Q ss_pred HHHhccCChHHHHHHHHHHH
Q 000232 1235 IIMQKSGSAEIRELIIRCIS 1254 (1822)
Q Consensus 1235 ~im~~~~~~eIre~IL~cl~ 1254 (1822)
.++++..-.-|+...+.-+.
T Consensus 423 QLLkkEaGl~VqKealhLLf 442 (652)
T PLN03205 423 LLLRKEGGLHVRKEAIHLFY 442 (652)
T ss_pred HHHHHhccchhhHHHHHHHH
Confidence 66666655556655555443
No 47
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=43.49 E-value=9.1e+02 Score=31.84 Aligned_cols=263 Identities=13% Similarity=0.116 Sum_probs=137.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccc--cCcHHHHH
Q 000232 1196 NLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVK--SGWKSVFS 1273 (1822)
Q Consensus 1196 n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~cl~qml~~~~~~Ik--SGWk~IF~ 1273 (1822)
+......+++.|+.+- .-+...++ ...+ .|+....-.++++.||..++..|..++.....-+. .+ ..++.
T Consensus 51 ~~e~v~~~~~iL~~~l-~~~~~~~l-----~~~~-~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~-~~l~~ 122 (503)
T PF10508_consen 51 NREQVELICDILKRLL-SALSPDSL-----LPQY-QPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD-NELLP 122 (503)
T ss_pred ChHHHHHHHHHHHHHH-hccCHHHH-----HHHH-HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC-ccHHH
Confidence 4444556667777642 22233332 1122 23322233467899999999999988865543111 11 12333
Q ss_pred HHHHhhccchHHHHHHHHHHHHHHHhccc--CcccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCC
Q 000232 1274 IFTAAAADERKNIVLLAFETMEKIVREYF--PHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGG 1351 (1822)
Q Consensus 1274 iL~~aa~~~~~~iV~~aF~~l~~I~~d~l--~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~d~L~~~~ 1351 (1822)
.+-..-.+++..+...|-.++..+..... ..+.. ... +..|.....+.. ..+-+...+++..++..
T Consensus 123 ~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~---~~~---~~~L~~l~~~~~-~~vR~Rv~el~v~i~~~----- 190 (503)
T PF10508_consen 123 LIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFD---SNL---LSKLKSLMSQSS-DIVRCRVYELLVEIASH----- 190 (503)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhC---cch---HHHHHHHHhccC-HHHHHHHHHHHHHHHhc-----
Confidence 33334456778888999999988876321 11210 111 444555443321 12333333333322110
Q ss_pred cccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHH-HHHHHHHhhccCChHHHHHHHHHHHHHHHHhcCCCCChhHH
Q 000232 1352 LVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWV-PLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFW 1430 (1822)
Q Consensus 1352 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~-pLL~~Ls~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W 1430 (1822)
+.+.....|- .+|..+-+...+.+.=||-.|+++|-++-..+ +-.
T Consensus 191 ----------------------------S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~------~g~ 236 (503)
T PF10508_consen 191 ----------------------------SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP------HGL 236 (503)
T ss_pred ----------------------------CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh------hHH
Confidence 0000111111 24555555555677889999999999987732 236
Q ss_pred HHHHHHhHHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHhh
Q 000232 1431 MGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFI 1510 (1822)
Q Consensus 1431 ~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~laL~~lv~lf~~yf~~l~~~w~~lL~lL~~~i 1510 (1822)
..+.+.-+++.+-.+....+. ++.... + -..-.++..+.++...-..+...++.+++.+..++
T Consensus 237 ~yL~~~gi~~~L~~~l~~~~~--------------dp~~~~-~--~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~ 299 (503)
T PF10508_consen 237 QYLEQQGIFDKLSNLLQDSEE--------------DPRLSS-L--LLPGRMKFFGNLARVSPQEVLELYPAFLERLFSML 299 (503)
T ss_pred HHHHhCCHHHHHHHHHhcccc--------------CCcccc-h--hhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHh
Confidence 777777788777776542211 110100 0 11111233333433222233445778888888888
Q ss_pred cCCCcchhHHHHHHHHHHH
Q 000232 1511 RSPIQGPASTGVAALLHLA 1529 (1822)
Q Consensus 1511 ~~~~~~ia~~g~~~L~~Ll 1529 (1822)
.+.+.++..+++.+|-.+=
T Consensus 300 ~s~d~~~~~~A~dtlg~ig 318 (503)
T PF10508_consen 300 ESQDPTIREVAFDTLGQIG 318 (503)
T ss_pred CCCChhHHHHHHHHHHHHh
Confidence 8888877777777766543
No 48
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.79 E-value=1.7e+02 Score=38.83 Aligned_cols=153 Identities=17% Similarity=0.283 Sum_probs=83.8
Q ss_pred cchhhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH---HHHhchhhhhchhhhhhhHHH----HHHHHhccCChHHHH
Q 000232 1175 LVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLA---MKFLEREELANYNFQNEFLRP----FVIIMQKSGSAEIRE 1247 (1822)
Q Consensus 1175 l~W~~IW~~L~~hf~~vg~h~n~~va~~AiDsLrqLs---~kfLe~eEL~~f~FQ~~fLkP----fe~im~~~~~~eIre 1247 (1822)
-.|+.+-..|.+.+. .++...-.-|++.|.+++ -.+++.+=+ .+.|.+ |-. +-+++++.||-
T Consensus 124 ~~wpelLp~L~~~L~----s~d~n~~EgA~~AL~KIcEDsa~~lds~~~------~rpl~~mipkfl~-f~~h~spkiRs 192 (885)
T KOG2023|consen 124 QHWPELLPQLCELLD----SPDYNTCEGAFGALQKICEDSAQFLDSDVL------TRPLNIMIPKFLQ-FFKHPSPKIRS 192 (885)
T ss_pred ccchhHHHHHHHHhc----CCcccccchhHHHHHHHHhhhHHHHhhhcc------cCchHHhHHHHHH-HHhCCChhHHH
Confidence 467665555554443 333233333455566653 334433221 122222 222 23566899999
Q ss_pred HHHHHHHHHHHhhccccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCcccccccchHHHHHHHHHHHHcCC
Q 000232 1248 LIIRCISQMVLSRVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSR 1327 (1822)
Q Consensus 1248 ~IL~cl~qml~~~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~ 1327 (1822)
..+.||+|+|-.+.+.+--.=..-.+.+=+-|.|+++++-+..-..+-.+..-..+.+. ......|+-... ..|.
T Consensus 193 ~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~----phl~~IveyML~-~tqd 267 (885)
T KOG2023|consen 193 HAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLV----PHLDNIVEYMLQ-RTQD 267 (885)
T ss_pred HHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcc----cchHHHHHHHHH-HccC
Confidence 99999999998776655444444455554556777777665555555444443333332 122222222222 3667
Q ss_pred CCccccHHHHHHHHHH
Q 000232 1328 FNSDVCLNAIAFLRFC 1343 (1822)
Q Consensus 1328 ~d~niSL~AI~~L~~~ 1343 (1822)
.|.+++++|-++.-.+
T Consensus 268 ~dE~VALEACEFwla~ 283 (885)
T KOG2023|consen 268 VDENVALEACEFWLAL 283 (885)
T ss_pred cchhHHHHHHHHHHHH
Confidence 7889999998875543
No 49
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=41.19 E-value=9.2e+02 Score=31.24 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=46.5
Q ss_pred HHHhhhchhhhhHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHhhCCCCCHHHHHHH
Q 000232 1487 IFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREI 1544 (1822)
Q Consensus 1487 lf~~yf~~l~~~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll~~~~~~f~~~~W~~i 1544 (1822)
+...||..+...+-++...+..|+-.....+-.-|..|+..+..+.+....++.|+.-
T Consensus 281 ~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~ 338 (728)
T KOG4535|consen 281 LLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAP 338 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccch
Confidence 3445666666667788888888888888888888999999999999988888888753
No 50
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=41.14 E-value=3.2e+02 Score=35.11 Aligned_cols=113 Identities=11% Similarity=0.161 Sum_probs=72.3
Q ss_pred HHHHHHhhccCChHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhHHhhhhhccccCCCCCCCCCCCCCCCCCCcccc
Q 000232 1391 LLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGS 1470 (1822)
Q Consensus 1391 LL~~Ls~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~~~~~ 1470 (1822)
+..-|..+..+++.+-|++|+.-|..++.. +.|+ .|+.+|.++|.-+|+.+.... +
T Consensus 288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e--~sfs--vWeq~f~~iL~~l~EvL~d~~------------------~-- 343 (516)
T KOG2956|consen 288 VADLLKEISGSERASERKEALSELPKMLCE--GSFS--VWEQHFAEILLLLLEVLSDSE------------------D-- 343 (516)
T ss_pred HHHHHHhccCccchhHHHHHHHHHHHHHHc--cchh--HHHHHHHHHHHHHHHHHccch------------------h--
Confidence 333444455668999999999999999883 4555 499999999999999986511 1
Q ss_pred ccHHHhHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHH
Q 000232 1471 TWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAG 1530 (1822)
Q Consensus 1471 ~W~~eT~~laL~~lv~lf~~yf~~l~~~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll~ 1530 (1822)
..-..+||+.+.++.++.=..+..--.-.+.-+-.+-+..++.+.+.+..|.-.++-
T Consensus 344 ---~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~la 400 (516)
T KOG2956|consen 344 ---EIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLA 400 (516)
T ss_pred ---hHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 245678888888877663322221111111112235566677777777766554444
No 51
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=40.78 E-value=67 Score=31.74 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=48.9
Q ss_pred HHhHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHhhcCCCcchhHHHHHHHHH
Q 000232 1474 SETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLH 1527 (1822)
Q Consensus 1474 ~eT~~laL~~lv~lf~~yf~~l~~~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~ 1527 (1822)
.+...+.++.+..+...+.+.+..-|+-+++.+......+++.+.+.|..|++.
T Consensus 32 ~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 32 IDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 477888889999888888899998999999999999999999999999999874
No 52
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=40.78 E-value=9.5e+02 Score=31.29 Aligned_cols=205 Identities=16% Similarity=0.163 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHhcccCcccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCC
Q 000232 1285 NIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSS 1364 (1822)
Q Consensus 1285 ~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~d~L~~~~~~~~~~~~~~~~~ 1364 (1822)
.....-|+.+..+++=.+..+. .+....+|..+...|++....+.=..++.+|-.+.-| +.
T Consensus 149 ~~l~~ll~~l~nviKfn~~~l~---e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y---~~------------- 209 (464)
T PF11864_consen 149 SNLSDLLQFLVNVIKFNFNYLD---EDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITY---GD------------- 209 (464)
T ss_pred hhHHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc---Cc-------------
Confidence 3445567777777776666665 4777888888888876654332223444444333221 00
Q ss_pred CCCCCCCCCcccCCCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhHHhhhhh
Q 000232 1365 SPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNG 1444 (1822)
Q Consensus 1365 ~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPlfd~ 1444 (1822)
.| ..---+++..|..+..-. +..+.|-+++-.++++|-+ ...++ =|.+-
T Consensus 210 -iP-----------------~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g-------~~~i~----~L~~i 258 (464)
T PF11864_consen 210 -IP-----------------SESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLG-------HSAIR----TLCDI 258 (464)
T ss_pred -CC-----------------hHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccH-------HHHHH----HHHHH
Confidence 01 011235666666653222 7888899999998887632 22222 22222
Q ss_pred ccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHHHHHHHHHhh----hchhhhhHHHHHHHHHHhhcCCCcchhHH
Q 000232 1445 VCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLVDIFICF----FDVVRSQLPGVVSILTGFIRSPIQGPAST 1520 (1822)
Q Consensus 1445 l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~laL~~lv~lf~~y----f~~l~~~w~~lL~lL~~~i~~~~~~ia~~ 1520 (1822)
++.... +. .. ....+.=|+.-+.++...+ +..+..-..-++.-|...++.++.-++.-
T Consensus 259 L~~~~~---------------~~-~~--~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~e 320 (464)
T PF11864_consen 259 LRSPDP---------------QN-KR--DINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYE 320 (464)
T ss_pred HcccCc---------------cc-cc--cHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHH
Confidence 321100 00 00 0122223333333333333 12222223347777777888899999999
Q ss_pred HHHHHHHHH-HhhCCCCCHHHHHHHHHHHHHHHhhccc
Q 000232 1521 GVAALLHLA-GELGSRLSQDEWREILLALKETTASTLP 1557 (1822)
Q Consensus 1521 g~~~L~~Ll-~~~~~~f~~~~W~~i~~~l~~~f~~T~p 1557 (1822)
...++.+++ ..-+..+.++.|+.+++.+.++++...+
T Consensus 321 Il~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~ 358 (464)
T PF11864_consen 321 ILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQP 358 (464)
T ss_pred HHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhccc
Confidence 999999999 8888999999999999999886655544
No 53
>PTZ00429 beta-adaptin; Provisional
Probab=40.39 E-value=1.2e+03 Score=32.39 Aligned_cols=239 Identities=12% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhchhhhhchhhhhhhH----HHHHHHHhccCChHHHHHHHHHHHHHHHh
Q 000232 1184 LSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFL----RPFVIIMQKSGSAEIRELIIRCISQMVLS 1259 (1822)
Q Consensus 1184 L~~hf~~vg~h~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fL----kPfe~im~~~~~~eIre~IL~cl~qml~~ 1259 (1822)
+-+.+...-.|.|.+|.+.|+..+-.+.... +-..++..+ .|+..+ .+.++++|-.+|+.|..+++.
T Consensus 257 il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~-------~~~~~~~~~~rl~~pLv~L--~ss~~eiqyvaLr~I~~i~~~ 327 (746)
T PTZ00429 257 LLTRVLPRMSHQNPAVVMGAIKVVANLASRC-------SQELIERCTVRVNTALLTL--SRRDAETQYIVCKNIHALLVI 327 (746)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCcC-------CHHHHHHHHHHHHHHHHHh--hCCCccHHHHHHHHHHHHHHH
Q ss_pred hccccccCcHHHHHHHHHhhccchHHHHHHHHHHHHHHHhcccCcccccccchHHHHHHHHHHHHcCCCCccccHHHHHH
Q 000232 1260 RVSNVKSGWKSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAF 1339 (1822)
Q Consensus 1260 ~~~~IkSGWk~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~ 1339 (1822)
+..-+..- +.+|-.-..|+.. +-....+++-.++++ ++..+++.=|.+|+. ..|.++.-.||.-
T Consensus 328 ~P~lf~~~----~~~Ff~~~~Dp~y-IK~~KLeIL~~Lane----------~Nv~~IL~EL~eYa~-d~D~ef~r~aIrA 391 (746)
T PTZ00429 328 FPNLLRTN----LDSFYVRYSDPPF-VKLEKLRLLLKLVTP----------SVAPEILKELAEYAS-GVDMVFVVEVVRA 391 (746)
T ss_pred CHHHHHHH----HHhhhcccCCcHH-HHHHHHHHHHHHcCc----------ccHHHHHHHHHHHhh-cCCHHHHHHHHHH
Q ss_pred HHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHHHHH
Q 000232 1340 LRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILK 1419 (1822)
Q Consensus 1340 L~~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~eVR~~AlqtLF~iL~ 1419 (1822)
+-.|+.++. ...--.+..|.++..+ +.++-..++.++.+++.
T Consensus 392 Ig~lA~k~~-------------------------------------~~a~~cV~~Ll~ll~~-~~~~v~e~i~vik~Ilr 433 (746)
T PTZ00429 392 IASLAIKVD-------------------------------------SVAPDCANLLLQIVDR-RPELLPQVVTAAKDIVR 433 (746)
T ss_pred HHHHHHhCh-------------------------------------HHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHH
Q ss_pred hcCCCC------------------ChhHHHHHHHH----------hHHhhhhhccccCCCCCCCCCCCCCCCCCCccccc
Q 000232 1420 DHGHLF------------------PRQFWMGVYSH----------VIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGST 1471 (1822)
Q Consensus 1420 ~~G~~f------------------~~~~W~~i~~~----------VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 1471 (1822)
.|-..+ ....---|+.+ +|-.+++......
T Consensus 434 kyP~~~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~a~~~L~~~i~~f~~E~---------------------- 491 (746)
T PTZ00429 434 KYPELLMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIENGKDIIQRFIDTIMEHE---------------------- 491 (746)
T ss_pred HCccHHHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhhHHHHHHHHHhhhccCC----------------------
Q ss_pred cHHHhHHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHh
Q 000232 1472 WDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGF 1509 (1822)
Q Consensus 1472 W~~eT~~laL~~lv~lf~~yf~~l~~~w~~lL~lL~~~ 1509 (1822)
.++..+.|...+++|.++=+....++..+|....+.
T Consensus 492 --~~VqlqlLta~vKlfl~~p~~~~~~l~~vL~~~t~~ 527 (746)
T PTZ00429 492 --QRVQLAILSAAVKMFLRDPQGMEPQLNRVLETVTTH 527 (746)
T ss_pred --HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhc
No 54
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=38.35 E-value=3.5e+02 Score=32.94 Aligned_cols=105 Identities=16% Similarity=0.282 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhc
Q 000232 1182 NVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRV 1261 (1822)
Q Consensus 1182 ~~L~~hf~~vg~h~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~cl~qml~~~~ 1261 (1822)
..+..+..-.-.|++..|+..|+.+|.-.++ +++ ++-++++.-|...+. ..+.+||-..++++..++..+|
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L--ld~------~~a~~~l~l~~~~~~-~~~~~v~~~al~~l~Dll~~~g 96 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCL--LDK------ELAKEHLPLFLQALQ-KDDEEVKITALKALFDLLLTHG 96 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--hCh------HHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcC
Confidence 3444445556677788999999998886553 222 334455566767664 3489999999999999999999
Q ss_pred cccccCcH---------HHHHHHHHhhccchHHHHHHHHHHHH
Q 000232 1262 SNVKSGWK---------SVFSIFTAAAADERKNIVLLAFETME 1295 (1822)
Q Consensus 1262 ~~IkSGWk---------~IF~iL~~aa~~~~~~iV~~aF~~l~ 1295 (1822)
..+-..+. .+..+|.....+.++++-..|-+.+-
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~ 139 (298)
T PF12719_consen 97 IDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLC 139 (298)
T ss_pred chhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 77655443 45555555554444444444444443
No 55
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=37.47 E-value=3.3e+02 Score=37.64 Aligned_cols=162 Identities=17% Similarity=0.164 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHhhcccccc-CcHHHHH-HHHHhhccchHHHHHHHHHHHHHHHhcccCcccccccchHHHHHHHHH-
Q 000232 1245 IRELIIRCISQMVLSRVSNVKS-GWKSVFS-IFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLL- 1321 (1822)
Q Consensus 1245 Ire~IL~cl~qml~~~~~~IkS-GWk~IF~-iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~- 1321 (1822)
-|..+.+-+..+++.+-.+|+| |=.-.|+ ++.++.++++|.-...+|..++.|..-.++.=+ ..+.+-|.+-|-.
T Consensus 143 ~R~~~~~Il~~~l~~~~~~l~s~~~D~~~~~f~~~~~GEKDPRnLml~F~l~~~i~s~~~~l~~--F~edlFeV~~CYFP 220 (1030)
T KOG1967|consen 143 ERLLQYEILEWFLDYRLEFLKSLGPDFLFTAFCKVVDGEKDPRNLMLVFSLVKEISSLNFPLGP--FTEDLFEVIACYFP 220 (1030)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcCCCCchhhHHHHHHHHHHhhccCCCCc--cHHHHHHHhheeee
Confidence 3566666777788899999999 9999998 888888899999999999999999984333222 1234445555542
Q ss_pred -HHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHHhhcc
Q 000232 1322 -TFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTS 1400 (1822)
Q Consensus 1322 -~F~~~~~d~niSL~AI~~L~~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~ 1400 (1822)
.|.-.+.|.+. .+.=++-..+...+. ..+.+..+-+|+|.. =.+
T Consensus 221 I~Fkppk~D~~~-I~reDL~~sLr~al~-------------------------------stP~Fa~~~lp~LlE---KL~ 265 (1030)
T KOG1967|consen 221 ITFKPPKDDTIT-IRREDLKASLRSALV-------------------------------STPSFAPFALPLLLE---KLN 265 (1030)
T ss_pred eeccCCCCCccc-ccHHHHHHHHHHHHh-------------------------------cCccchhhHHHHHHH---Hhc
Confidence 34444444321 111111111111222 112244455665543 223
Q ss_pred CChHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhHHhhhh
Q 000232 1401 DSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFN 1443 (1822)
Q Consensus 1401 d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPlfd 1443 (1822)
++.+-+..-+++||-++...||..==-.+|...+..+=+-+++
T Consensus 266 as~~~~K~DsL~~L~ec~~~ygv~~~~~~~~~lWsaik~ei~~ 308 (1030)
T KOG1967|consen 266 ASDPSAKVDSLDTLNECCLKYGVRRMLPAQKKLWSAIKPEIGQ 308 (1030)
T ss_pred cccchhhhhHHHHHHHHHHHhCchhhhhhHHHHHHHHHHHHcc
Confidence 4556788899999999999999652223466655543334444
No 56
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=33.73 E-value=27 Score=39.37 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=35.2
Q ss_pred ccchHHHHHhhcCCCcchHHHHHHHHHHHHhccCCcCcc
Q 000232 70 GLVLHPIFLALDSAYPKVVEPALECAFKLFSLGLARGEI 108 (1822)
Q Consensus 70 ~~i~~P~~lAc~t~~~kl~~~ALdclqKLia~~~l~~~~ 108 (1822)
..+..|++-|..|+++.+...+|.|||+|+..+-..|+.
T Consensus 79 PqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~a 117 (183)
T PF10274_consen 79 PQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEA 117 (183)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 578899999999999999999999999998887777765
No 57
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=33.08 E-value=4e+02 Score=30.02 Aligned_cols=152 Identities=13% Similarity=0.190 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHH
Q 000232 1315 DCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTG 1394 (1822)
Q Consensus 1315 d~I~cL~~F~~~~~d~niSL~AI~~L~~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~ 1394 (1822)
-+|.||.. ++++-+.+..|+.+...++..-+.+ .+ .-|.=|..+
T Consensus 7 lLIsCL~~-------q~~k~s~~KiL~~iVs~Va~~v~~~-------------------------~~----~~W~eL~d~ 50 (174)
T PF04510_consen 7 LLISCLTM-------QETKESDFKILRRIVSHVAYEVFDL-------------------------QE----GGWDELSDC 50 (174)
T ss_pred HHHHHHHh-------hcccHhHHHHHHHHHHHHHHHHHhc-------------------------CC----CCchhHHHH
Confidence 46777776 4566667778887777766432211 11 225555555
Q ss_pred HHhhccCChHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhHHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHH
Q 000232 1395 LSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDS 1474 (1822)
Q Consensus 1395 Ls~l~~d~R~eVR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~ 1474 (1822)
+..+.... + .+|..++.++=.. +..+|-...++. |+|-+......++ ..+.
T Consensus 51 Ils~~~~e-~---~kA~~IF~~L~~~----l~~efl~~~~~~-L~~~~~~~L~~p~---------------~~d~----- 101 (174)
T PF04510_consen 51 ILSLSENE-P---VKAFHIFICLPMP----LYGEFLIPFMEN-LLPEISKVLLPPE---------------EVDV----- 101 (174)
T ss_pred HHHhhccc-h---HHHHHHHHhCCch----hhhhHHHHHHHH-HHHHHHHHcCCch---------------hccH-----
Confidence 44443211 1 4565554443211 133445555553 6666666554221 2233
Q ss_pred HhHHHHHHHHHHHHHhhhchh------hhhHHHHHHHHHHhhcCCCc-chhHHHHHHHHHHHHh
Q 000232 1475 ETAAIGAECLVDIFICFFDVV------RSQLPGVVSILTGFIRSPIQ-GPASTGVAALLHLAGE 1531 (1822)
Q Consensus 1475 eT~~laL~~lv~lf~~yf~~l------~~~w~~lL~lL~~~i~~~~~-~ia~~g~~~L~~Ll~~ 1531 (1822)
+.-++|+.+.+..+.|..+.- ..+...+++-+.+.+..+.+ +..+-|..-++.++..
T Consensus 102 ~~W~LAl~~a~~~~Iql~e~~~~~~~vk~L~~~mv~Sv~elV~~g~E~~~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 102 EDWVLALTGAVCMAIQLLESSMRVDLVKELLPKMVKSVKELVERGMEVGFLRRGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 344689999888888876543 34455566666667779999 9999999999988874
No 58
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.73 E-value=4.7e+02 Score=34.32 Aligned_cols=213 Identities=16% Similarity=0.185 Sum_probs=119.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHHhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhcccccc
Q 000232 1187 FFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKS 1266 (1822)
Q Consensus 1187 hf~~vg~h~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~cl~qml~~~~~~IkS 1266 (1822)
.|+....+++..|+..|+-+|..++- ....+++|-...-.|.|+..++..+...-++..+.-+|.++...+. =.-
T Consensus 156 ~fi~Ll~s~~~~v~eQavWALgNIag---ds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~--P~P 230 (514)
T KOG0166|consen 156 IFIQLLSSPSADVREQAVWALGNIAG---DSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN--PSP 230 (514)
T ss_pred HHHHHhcCCcHHHHHHHHHHHhcccc---CChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC--CCC
Confidence 37777788899999999999888753 3577788888888999998877666555666777778877764432 222
Q ss_pred CcHHHHHHHHHhh---ccchHHHHHHHHHHHHHHHh---cccCcccccccchHHHHHHHHHHHHcCCCCccccHHHHHHH
Q 000232 1267 GWKSVFSIFTAAA---ADERKNIVLLAFETMEKIVR---EYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFL 1340 (1822)
Q Consensus 1267 GWk~IF~iL~~aa---~~~~~~iV~~aF~~l~~I~~---d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L 1340 (1822)
-|..|=.+|-+-. ...++.+..-|.-.+..+.+ +..+.+. +.+....+|.+|..... ++-..|+..+
T Consensus 231 ~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi--~~gvv~~LV~lL~~~~~-----~v~~PaLRai 303 (514)
T KOG0166|consen 231 PFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVI--DAGVVPRLVDLLGHSSP-----KVVTPALRAI 303 (514)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH--HccchHHHHHHHcCCCc-----ccccHHHhhc
Confidence 4444433333322 23444444444444433322 1111121 12334444444443321 1112222111
Q ss_pred HHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHHhhccC-ChHHHHHHHHHHHHHHHH
Q 000232 1341 RFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSD-SRSTIRKSSLEVLFNILK 1419 (1822)
Q Consensus 1341 ~~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d-~R~eVR~~AlqtLF~iL~ 1419 (1822)
-++ ..+ .+.....-+-..+|..|..+.+. +..-+|+.|.=++-+|-.
T Consensus 304 GNI----vtG----------------------------~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 304 GNI----VTG----------------------------SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred cce----eec----------------------------cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 110 000 00000111223566777777664 444499999999999877
Q ss_pred hcCCCCChhHHHHHHHHhHHhhhhhcccc
Q 000232 1420 DHGHLFPRQFWMGVYSHVIFPIFNGVCDK 1448 (1822)
Q Consensus 1420 ~~G~~f~~~~W~~i~~~VLfPlfd~l~~~ 1448 (1822)
|. ++.-+.+++.-|+|.+-.+...
T Consensus 352 --G~---~~qiqaVida~l~p~Li~~l~~ 375 (514)
T KOG0166|consen 352 --GN---QEQIQAVIDANLIPVLINLLQT 375 (514)
T ss_pred --CC---HHHHHHHHHcccHHHHHHHHhc
Confidence 54 3456888888899988887653
No 59
>PRK09687 putative lyase; Provisional
Probab=32.45 E-value=5.9e+02 Score=30.85 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=57.6
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHHhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCc
Q 000232 1189 VSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGW 1268 (1822)
Q Consensus 1189 ~~vg~h~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~cl~qml~~~~~~IkSGW 1268 (1822)
.....+++..+|..|++.|.||... .. -|...+..+..++.+..+.+||...+..|.++= .. . ...+
T Consensus 60 ~~ll~~~d~~vR~~A~~aLg~lg~~----~~-----~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~-~~-~--~~~~ 126 (280)
T PRK09687 60 IELCSSKNPIERDIGADILSQLGMA----KR-----CQDNVFNILNNLALEDKSACVRASAINATGHRC-KK-N--PLYS 126 (280)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCC----cc-----chHHHHHHHHHHHhcCCCHHHHHHHHHHHhccc-cc-c--cccc
Confidence 3445678999999999999996320 00 044555666666667788999999999997751 11 1 1123
Q ss_pred HHHHHHHHHhhccchHHHHHHHHHHH
Q 000232 1269 KSVFSIFTAAAADERKNIVLLAFETM 1294 (1822)
Q Consensus 1269 k~IF~iL~~aa~~~~~~iV~~aF~~l 1294 (1822)
......+..+..|++..+-..+-..|
T Consensus 127 ~~a~~~l~~~~~D~~~~VR~~a~~aL 152 (280)
T PRK09687 127 PKIVEQSQITAFDKSTNVRFAVAFAL 152 (280)
T ss_pred hHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 55666666666666554433333333
No 60
>PLN03205 ATR interacting protein; Provisional
Probab=31.21 E-value=7.6e+02 Score=31.05 Aligned_cols=159 Identities=15% Similarity=0.198 Sum_probs=77.6
Q ss_pred ccCcHHHHHHHHHhhccchHHHHH-HHHHHHHHHHhcccCcccccccchH--HHHHHHHHHHHcCCCCccccHHHHHH--
Q 000232 1265 KSGWKSVFSIFTAAAADERKNIVL-LAFETMEKIVREYFPHITETESTTF--TDCVKCLLTFTNSRFNSDVCLNAIAF-- 1339 (1822)
Q Consensus 1265 kSGWk~IF~iL~~aa~~~~~~iV~-~aF~~l~~I~~d~l~~l~~~~~~~f--~d~I~cL~~F~~~~~d~niSL~AI~~-- 1339 (1822)
.-.|-.+|++....|..+.++-|+ -|..+..-|...--.+. +.+.| ....+.+..+-+.....-+--+|+.+
T Consensus 366 ~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmssna~~---eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLf 442 (652)
T PLN03205 366 DANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMSTDAYT---ARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFY 442 (652)
T ss_pred cccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhccchhH---HHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHH
Confidence 448999999998877655555444 46666655542110000 01111 12333344444333333444455554
Q ss_pred -HHHHHHHhhcCCcccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHHhh--cc---CChHHHHHHHHHH
Q 000232 1340 -LRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKL--TS---DSRSTIRKSSLEV 1413 (1822)
Q Consensus 1340 -L~~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l--~~---d~R~eVR~~Alqt 1413 (1822)
|-+|..-|. ++|......++. +.. ..........+.+-.+|.||+++ |. -...+.|++|+-.
T Consensus 443 LLLNCpklL~---iFcSg~~e~~~a------d~e---Nd~~~n~st~k~fSsIlegLAeCiac~~~s~~dIeLck~aiim 510 (652)
T PLN03205 443 LLLNCPKLYD---RFDSLHEEKNSS------DTE---NDSEGNFFALEAFGKIFEGLADCLTSPRKTSEDLELCRNVIMI 510 (652)
T ss_pred HHHcCcHHHH---HHhcCCcccccc------ccc---cccccccccHHHHHHHHHHHHHHHcCCCCChhhhHHHHHHHHH
Confidence 446655443 222111100000 000 00000112345677899999997 32 2578999999887
Q ss_pred H----------HHHHHhcCCCCChhHHHHHHHHhHH
Q 000232 1414 L----------FNILKDHGHLFPRQFWMGVYSHVIF 1439 (1822)
Q Consensus 1414 L----------F~iL~~~G~~f~~~~W~~i~~~VLf 1439 (1822)
| |++|..|--.=+.+|-..|++ ||.
T Consensus 511 LAflASSGk~GfEilv~hkl~~~~NFLmLILq-vLv 545 (652)
T PLN03205 511 LALAASSGNSGYELLSNHKLPQDSNFLMLILH-LLV 545 (652)
T ss_pred HHHHHhcCCCCceeeecccCCCCccHHHHHHH-HHH
Confidence 7 445554433335556666555 443
No 61
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=30.60 E-value=81 Score=31.39 Aligned_cols=44 Identities=16% Similarity=0.343 Sum_probs=31.9
Q ss_pred CCcccccc-HHHhHHHHHHHHHHHHHhhhchhhh-------hHHHHHHHHHH
Q 000232 1465 PLSEGSTW-DSETAAIGAECLVDIFICFFDVVRS-------QLPGVVSILTG 1508 (1822)
Q Consensus 1465 ~~~~~~~W-~~eT~~laL~~lv~lf~~yf~~l~~-------~w~~lL~lL~~ 1508 (1822)
...+...| +.|....|+.|+|++|..|+...++ =..++++++..
T Consensus 12 ~r~esRT~~DYesv~e~megiCk~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~ 63 (104)
T KOG1766|consen 12 PRPESRTWGDYESVTECMEGICKMYEEHLKKKNPSAPPITYDISQLFEFIDD 63 (104)
T ss_pred CCcccccccchHhHHHHHHHHHHHHHHHHHhcCCCCCCcceeHHHHHHHHHH
Confidence 34555667 4789999999999999999987643 14556665543
No 62
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.61 E-value=1.4e+03 Score=31.52 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhchhhhhhhHHHHHHHHhccC-ChHHHHHHHHHHHHHHHhhccccccCcHHHHHHHH
Q 000232 1198 SVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSG-SAEIRELIIRCISQMVLSRVSNVKSGWKSVFSIFT 1276 (1822)
Q Consensus 1198 ~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~im~~~~-~~eIre~IL~cl~qml~~~~~~IkSGWk~IF~iL~ 1276 (1822)
.=|+-|+-.|+-+|.|| +++..- .-++||..++.+.. ++|+-..+|+++..++..-. .-
T Consensus 38 eDRR~A~rgLKa~srkY--R~~Vga-----~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd-------------~~ 97 (970)
T KOG0946|consen 38 EDRRDAVRGLKAFSRKY--REEVGA-----QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD-------------SP 97 (970)
T ss_pred hhHHHHHHHHHHHHHHH--HHHHHH-----cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc-------------ch
Confidence 33666777777777665 333322 34688888776654 78888888888876553222 00
Q ss_pred HhhccchHHHHHHHHHHHHHHHhcccCcccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHH
Q 000232 1277 AAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFC 1343 (1822)
Q Consensus 1277 ~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~ 1343 (1822)
-+..+.. .....+-.. ..-|.. =.|.|.||..|... +|.-+-+.||.+|-.+
T Consensus 98 ~v~dds~-qsdd~g~~i----ae~fik---------~qd~I~lll~~~e~-~DF~VR~~aIqLlsal 149 (970)
T KOG0946|consen 98 EVMDDST-QSDDLGLWI----AEQFIK---------NQDNITLLLQSLEE-FDFHVRLYAIQLLSAL 149 (970)
T ss_pred hhcccch-hhhHHHHHH----HHHHHc---------CchhHHHHHHHHHh-hchhhhhHHHHHHHHH
Confidence 1111111 122233222 222211 13556677776654 4677889999887654
No 63
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=28.18 E-value=2.7e+02 Score=30.32 Aligned_cols=80 Identities=11% Similarity=0.254 Sum_probs=50.9
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhc---hhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcH
Q 000232 1193 LSENLSVAIFVMDSLRQLAMKFLE---REELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWK 1269 (1822)
Q Consensus 1193 ~h~n~~va~~AiDsLrqLs~kfLe---~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~cl~qml~~~~~~IkSGWk 1269 (1822)
.|+|..+..+|+..|--+ ++--. ..|.+ .++|+..+..+.....+.+|++.|++.|. .|.
T Consensus 47 ~~~n~~v~l~AL~LLe~~-vkNCG~~fh~eva----sk~Fl~eL~kl~~~~~~~~Vk~kil~li~------------~W~ 109 (144)
T cd03568 47 NHKDPNVQLRALTLLDAC-AENCGKRFHQEVA----SRDFTQELKKLINDRVHPTVKEKLREVVK------------QWA 109 (144)
T ss_pred cCCCHHHHHHHHHHHHHH-HHHCCHHHHHHHh----hHHHHHHHHHHhcccCCHHHHHHHHHHHH------------HHH
Confidence 478899999988666543 33111 12333 24677777777766688999999999886 466
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHH
Q 000232 1270 SVFSIFTAAAADERKNIVLLAFETME 1295 (1822)
Q Consensus 1270 ~IF~iL~~aa~~~~~~iV~~aF~~l~ 1295 (1822)
.-|. .+++-..+..+|+.|+
T Consensus 110 ~~f~------~~~~l~~i~~~y~~L~ 129 (144)
T cd03568 110 DEFK------NDPSLSLMSDLYKKLK 129 (144)
T ss_pred HHhC------CCcccHHHHHHHHHHH
Confidence 5554 2333445666666654
No 64
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=27.58 E-value=6.4e+02 Score=25.57 Aligned_cols=95 Identities=13% Similarity=0.085 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhHHhhhhhccccCCCCCCCCCCCCCCCCCCccccccHHHhHHHHHHHHH
Q 000232 1406 IRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAIGAECLV 1485 (1822)
Q Consensus 1406 VR~~AlqtLF~iL~~~G~~f~~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~~~~~~~~~~~~~W~~eT~~laL~~lv 1485 (1822)
.|++++-.|-.+-..-|.. +...++.++=|++.-+.. .+..+ -.....+|..++
T Consensus 2 ~R~ggli~Laa~ai~l~~~-----~~~~l~~Il~pVL~~~~D-------------------~d~rV--Ry~AcEaL~ni~ 55 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-----ISKYLDEILPPVLKCFDD-------------------QDSRV--RYYACEALYNIS 55 (97)
T ss_pred chhHHHHHHHHHHHHchHh-----HHHHHHHHHHHHHHHcCC-------------------CcHHH--HHHHHHHHHHHH
Confidence 4778888887776654443 888999999999987743 22111 123444555555
Q ss_pred HHHHhhhchhhhhHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHH
Q 000232 1486 DIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAG 1530 (1822)
Q Consensus 1486 ~lf~~yf~~l~~~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll~ 1530 (1822)
+++. +.+-..+.++++.|.+.+..+++.+ +.|.+-|-+|+.
T Consensus 56 k~~~---~~~l~~f~~IF~~L~kl~~D~d~~V-r~~a~~Ld~llk 96 (97)
T PF12755_consen 56 KVAR---GEILPYFNEIFDALCKLSADPDENV-RSAAELLDRLLK 96 (97)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHcCCchhH-HHHHHHHHHHhc
Confidence 5543 3344466777777777777766664 455566666653
No 65
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.10 E-value=1.4e+03 Score=31.48 Aligned_cols=84 Identities=24% Similarity=0.307 Sum_probs=63.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHHHHHhhcccccc-CcHHHHHHHHHh--------------hccchHHHHHHHHHHHHHH
Q 000232 1233 FVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKS-GWKSVFSIFTAA--------------AADERKNIVLLAFETMEKI 1297 (1822)
Q Consensus 1233 fe~im~~~~~~eIre~IL~cl~qml~~~~~~IkS-GWk~IF~iL~~a--------------a~~~~~~iV~~aF~~l~~I 1297 (1822)
...||.-..+...|+..+.||..++.++..|||- |-+.+..++..- -+|.+..|-+.|++..-.+
T Consensus 298 V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~l 377 (866)
T KOG1062|consen 298 VRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYAL 377 (866)
T ss_pred HHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 3467888888899999999999999999999998 777776665431 1245667778888877666
Q ss_pred HhcccCcccccccchHHHHHHHHHHHHcC
Q 000232 1298 VREYFPHITETESTTFTDCVKCLLTFTNS 1326 (1822)
Q Consensus 1298 ~~d~l~~l~~~~~~~f~d~I~cL~~F~~~ 1326 (1822)
+++ .+...+++=|.+|-.+
T Consensus 378 vn~----------~Nv~~mv~eLl~fL~~ 396 (866)
T KOG1062|consen 378 VNE----------SNVRVMVKELLEFLES 396 (866)
T ss_pred hcc----------ccHHHHHHHHHHHHHh
Confidence 654 4566777777777744
No 66
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=25.87 E-value=5.7e+02 Score=27.73 Aligned_cols=62 Identities=10% Similarity=0.189 Sum_probs=45.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 000232 471 SVMAVFQLQCSIFMSLLSKYRSGLKAEIG--IFFPMLVLRVLENVLQPSFVQKMTVLNLLEKIS 532 (1822)
Q Consensus 471 ~~~~vf~lsl~If~~L~~~~r~~LK~Eie--vfl~~i~l~ile~~~~~~~~qk~~vLe~l~~l~ 532 (1822)
.++.+.-++|.+.=.++.+-..++..||. -|+.+++.+++..+.+++..-|.-+|+++....
T Consensus 51 ~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 51 KNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 46777777888888899998888888885 788885557776543344444666788777665
No 67
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=24.98 E-value=97 Score=27.29 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhhchhhhhHHHHHHHHHHhhcCCCcchhHHHHHHHHHH
Q 000232 1477 AAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHL 1528 (1822)
Q Consensus 1477 ~~laL~~lv~lf~~yf~~l~~~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~L 1528 (1822)
...|+..++.+-....+.+.+...+++..|..++..+++.+-..++.+|.+|
T Consensus 4 R~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4455666665544555667778899999999999999999988888888754
No 68
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=24.83 E-value=4.7e+02 Score=32.18 Aligned_cols=81 Identities=20% Similarity=0.190 Sum_probs=59.5
Q ss_pred HHhHHHHHHHHHHHHHhhhc--hhhhhHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHhhCC-CCCHHHHHHHHHHHHH
Q 000232 1474 SETAAIGAECLVDIFICFFD--VVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGS-RLSQDEWREILLALKE 1550 (1822)
Q Consensus 1474 ~eT~~laL~~lv~lf~~yf~--~l~~~w~~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll~~~~~-~f~~~~W~~i~~~l~~ 1550 (1822)
..|+..+|.+++++|.+++- .+..-...+++.+.+|++.+..+=...+..++.=+.++.|. .=.++.++.+...|.+
T Consensus 57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~ 136 (309)
T PF05004_consen 57 SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKR 136 (309)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHH
Confidence 48999999999999988763 34455778999999999988765566778888888787663 3355666666655555
Q ss_pred HHhh
Q 000232 1551 TTAS 1554 (1822)
Q Consensus 1551 ~f~~ 1554 (1822)
+...
T Consensus 137 ~l~d 140 (309)
T PF05004_consen 137 ILTD 140 (309)
T ss_pred HHhC
Confidence 5443
No 69
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=23.99 E-value=7.7e+02 Score=29.81 Aligned_cols=144 Identities=15% Similarity=0.159 Sum_probs=77.7
Q ss_pred chhhHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHhcCC-C---CChhHHHHHHHHhHHhhhhhccccCCCCCCCCCCC
Q 000232 1384 NSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGH-L---FPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDS 1459 (1822)
Q Consensus 1384 ~~~lW~pLL~~Ls~l~~d~R~eVR~~AlqtLF~iL~~~G~-~---f~~~~W~~i~~~VLfPlfd~l~~~~~~~~~~~~~~ 1459 (1822)
..+.|--++=.+-.++-|..+++|-.+++.|-.++..-.. . |...-...+|.+.|+|.+-.+....
T Consensus 113 i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~t---------- 182 (282)
T PF10521_consen 113 ISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPIT---------- 182 (282)
T ss_pred HHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCC----------
Confidence 4456666666677777899999999999999999984332 2 2222234455555555555443210
Q ss_pred CCCCCCCccccccHHHhHHHHHHHHHHHHHhhh--------chhhhhHH-HHHHHHHHhhcCCCcchhHHHHHHHHHHHH
Q 000232 1460 PTSHSPLSEGSTWDSETAAIGAECLVDIFICFF--------DVVRSQLP-GVVSILTGFIRSPIQGPASTGVAALLHLAG 1530 (1822)
Q Consensus 1460 ~~~~~~~~~~~~W~~eT~~laL~~lv~lf~~yf--------~~l~~~w~-~lL~lL~~~i~~~~~~ia~~g~~~L~~Ll~ 1530 (1822)
.++ +.. .-...|...+..|+..-+ ..+..++. .+|.-+.....-++..+...-.+.+..++.
T Consensus 183 ------p~~--~s~-~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~ 253 (282)
T PF10521_consen 183 ------PED--ESL-ELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIID 253 (282)
T ss_pred ------Cch--hhH-HHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHH
Confidence 111 111 344445555555544322 11222222 244433333333458888888888888877
Q ss_pred hhCCCCCHHHHHHHHHH
Q 000232 1531 ELGSRLSQDEWREILLA 1547 (1822)
Q Consensus 1531 ~~~~~f~~~~W~~i~~~ 1547 (1822)
.-|. ..-.+-+.++-.
T Consensus 254 ~lGi-~~~~hL~rii~~ 269 (282)
T PF10521_consen 254 ELGI-SSVKHLQRIIPV 269 (282)
T ss_pred Hhcc-HHHHHHHHHHHH
Confidence 6443 333344444333
No 70
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=23.48 E-value=4.1e+02 Score=28.88 Aligned_cols=80 Identities=21% Similarity=0.425 Sum_probs=49.5
Q ss_pred CCCChHHHHHHHHHHHHHHHHHh-c--hhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcH
Q 000232 1193 LSENLSVAIFVMDSLRQLAMKFL-E--REELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWK 1269 (1822)
Q Consensus 1193 ~h~n~~va~~AiDsLrqLs~kfL-e--~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~cl~qml~~~~~~IkSGWk 1269 (1822)
.|+|..+..+|+..|--+ ++-- . ..|.+. ++|+..+..+.....+..|++.+++.|. +|.
T Consensus 51 ~~~n~~vql~AL~LLe~~-vkNCG~~fh~evas----~~fl~~l~~l~~~~~~~~Vk~kil~li~------------~W~ 113 (142)
T cd03569 51 LSKNPNVQLYALLLLESC-VKNCGTHFHDEVAS----REFMDELKDLIKTTKNEEVRQKILELIQ------------AWA 113 (142)
T ss_pred cCCChHHHHHHHHHHHHH-HHHCCHHHHHHHhh----HHHHHHHHHHHcccCCHHHHHHHHHHHH------------HHH
Confidence 457888999998766543 3311 0 123332 4567777777766778999999998885 676
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHH
Q 000232 1270 SVFSIFTAAAADERKNIVLLAFETME 1295 (1822)
Q Consensus 1270 ~IF~iL~~aa~~~~~~iV~~aF~~l~ 1295 (1822)
.-|. .+++-..+..+|+.|+
T Consensus 114 ~~f~------~~~~l~~i~~~y~~L~ 133 (142)
T cd03569 114 LAFR------NKPQLKYVVDTYQILK 133 (142)
T ss_pred HHhC------CCcccHHHHHHHHHHH
Confidence 5552 2233345555666553
No 71
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=23.26 E-value=1.2e+03 Score=26.90 Aligned_cols=81 Identities=10% Similarity=0.082 Sum_probs=54.0
Q ss_pred HhHHHHHHHHHHHHHHHHHccCcchhHHHHhhhhhhhhhccCCchhhhHhhhhhHHHHH---HHHHhhcCChHHHHhHhh
Q 000232 1709 LNIESHLVEACEMILQMYLNCTGQQKVKAVKQQRVVRWILPLGSARKEELAARTSLVVS---ALRVLSGLERETFKKYLS 1785 (1822)
Q Consensus 1709 ~~ie~~L~~lc~~il~~Y~~~~~~~~~~~~~~~~~~~~~~p~~~~~~r~i~aw~pvvv~---iL~~l~~l~~~~F~~~~~ 1785 (1822)
.--.+.++|+....-+...+...... ..+...|.-++.. .|-++|..+.|.= ...+
T Consensus 112 ~fF~~~~lPla~~~~~~~~~~~~~~~--------------------~~~ak~~~~l~~QlWslLP~FC~~P~D~~-~~F~ 170 (198)
T PF08161_consen 112 SFFVEEFLPLARRLRQKAQKASEAGK--------------------SVEAKIYETLVQQLWSLLPGFCNYPTDLA-ESFP 170 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc--------------------hHHHHHHHHHHHHHHHHhHHhcCCcccHH-HHHH
Confidence 34556677777766555443222222 2233445556554 4999999988654 4448
Q ss_pred hhhHHHHHHHhcCCCchhHHHHHHHHHH
Q 000232 1786 NIFPLLIDLVRSEHSSREVQLVLGTMFQ 1813 (1822)
Q Consensus 1786 ~~ypll~~Li~~e~~~~e~r~~l~~~~~ 1813 (1822)
.|=++|+.++... +|+|..+.+-++
T Consensus 171 ~~a~~L~~~L~~~---~~LR~~Ic~aL~ 195 (198)
T PF08161_consen 171 SFAKLLGNALYDQ---PDLRPIICQALR 195 (198)
T ss_pred HHHHHHHHHHhcC---cchHHHHHHHHH
Confidence 9999999999885 589999988876
No 72
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.76 E-value=2.2e+03 Score=29.83 Aligned_cols=161 Identities=19% Similarity=0.320 Sum_probs=88.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHhchhhhhchhhhhhhHHHHHHHHhccCChHHHHHHHHHHHHHHHhhccccccCcHHHHH
Q 000232 1194 SENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWKSVFS 1273 (1822)
Q Consensus 1194 h~n~~va~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPfe~im~~~~~~eIre~IL~cl~qml~~~~~~IkSGWk~IF~ 1273 (1822)
+.|.+|.+.+...+-++|-+- +. .-+-+|+..+|..+. ++|.++|++|..|...+..-+. +=|.
T Consensus 298 S~n~sVVmA~aql~y~lAP~~----~~------~~i~kaLvrLLrs~~--~vqyvvL~nIa~~s~~~~~lF~----P~lK 361 (968)
T KOG1060|consen 298 SRNPSVVMAVAQLFYHLAPKN----QV------TKIAKALVRLLRSNR--EVQYVVLQNIATISIKRPTLFE----PHLK 361 (968)
T ss_pred cCCcHHHHHHHhHHHhhCCHH----HH------HHHHHHHHHHHhcCC--cchhhhHHHHHHHHhcchhhhh----hhhh
Confidence 457788887777777765432 21 235688888886655 8999999999999866533211 1111
Q ss_pred HHHHhhccchHHHH-HHHHHHHHHHHhcccCcccccccchHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHhhcCCc
Q 000232 1274 IFTAAAADERKNIV-LLAFETMEKIVREYFPHITETESTTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGL 1352 (1822)
Q Consensus 1274 iL~~aa~~~~~~iV-~~aF~~l~~I~~d~l~~l~~~~~~~f~d~I~cL~~F~~~~~d~niSL~AI~~L~~~~d~L~~~~~ 1352 (1822)
-|-.-+.| +..| ..=.++|..+.++ .+...+..=|-.|++.... .+.-.||.-+-.|+..+..-.
T Consensus 362 sFfv~ssD--p~~vk~lKleiLs~La~e----------sni~~ILrE~q~YI~s~d~-~faa~aV~AiGrCA~~~~sv~- 427 (968)
T KOG1060|consen 362 SFFVRSSD--PTQVKILKLEILSNLANE----------SNISEILRELQTYIKSSDR-SFAAAAVKAIGRCASRIGSVT- 427 (968)
T ss_pred ceEeecCC--HHHHHHHHHHHHHHHhhh----------ccHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHhhCchh-
Confidence 11111122 2111 1223444433332 2333333334444544322 355566777777776542110
Q ss_pred ccccCCCCCCCCCCCCCCCCCcccCCCCcccchhhHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHh
Q 000232 1353 VCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLTSDSRSTIRKSSLEVLFNILKD 1420 (1822)
Q Consensus 1353 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~d~R~eVR~~AlqtLF~iL~~ 1420 (1822)
=-.|.||..++.....-|=..|..++-+.|..
T Consensus 428 ------------------------------------~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 428 ------------------------------------DTCLNGLVQLLSSHDELVVAEAVVVIKRLLQK 459 (968)
T ss_pred ------------------------------------hHHHHHHHHHHhcccchhHHHHHHHHHHHHhh
Confidence 03566667766666677888888888887764
No 73
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=21.37 E-value=5.8e+02 Score=27.83 Aligned_cols=60 Identities=10% Similarity=0.132 Sum_probs=38.8
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHH
Q 000232 470 LSVMAVFQLQCSIFMSLLSKYRSGLKAEI--GIFFPMLVLRVLENVLQPSFVQKMTVLNLLEKIS 532 (1822)
Q Consensus 470 S~~~~vf~lsl~If~~L~~~~r~~LK~Ei--evfl~~i~l~ile~~~~~~~~qk~~vLe~l~~l~ 532 (1822)
+..+.+--.+|.+.=.++.+-..++..|| .-|+.++ .+++..+..+. =|.-+|+++....
T Consensus 48 ~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL-~kl~~~~~~~~--Vk~kil~li~~W~ 109 (144)
T cd03568 48 HKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQEL-KKLINDRVHPT--VKEKLREVVKQWA 109 (144)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHH-HHHhcccCCHH--HHHHHHHHHHHHH
Confidence 45667777777777778888777777777 4688885 46665432333 3444677776543
Done!