Query 000232
Match_columns 1822
No_of_seqs 398 out of 1138
Neff 6.7
Searched_HMMs 29240
Date Tue Mar 26 18:07:47 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000232.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_9-13//hhsearch_pdb/000232hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ltl_A Brefeldin A-inhibited g 1.0 1 1 476.0 20.3 197 655-851 10-208 (211)
2 1r8s_E ARNO; protein transport 1.0 1 1 472.2 21.2 195 658-852 7-201 (203)
3 1ku1_A ARF guanine-nucleotide 1.0 1 1 463.0 18.8 196 656-853 16-228 (230)
4 1xsz_A Guanine nucleotide exch 1.0 1 1 441.8 20.2 191 664-854 8-203 (356)
5 2r09_A Cytohesin-3; autoinhibi 1.0 1 1 441.0 22.4 192 661-852 12-203 (347)
6 4fdd_A Transportin-1; heat rep 1.0 1 1 51.5 36.1 233 1242-1545 599-835 (852)
7 1ibr_B P95, importin beta-1 su 1.0 1 1 46.5 21.1 319 1176-1549 125-457 (462)
8 2bpt_A Importin beta-1 subunit 1.0 1 1 44.6 40.0 23 1403-1425 795-818 (861)
9 4fdd_A Transportin-1; heat rep 1.0 1 1 43.5 42.0 108 1400-1534 680-788 (852)
10 1u6g_C TIP120 protein, CAND1; 1.0 1 1 41.8 36.8 296 1155-1532 835-1134(1230)
No 1
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=1.00 E-value=1 Score=475.98 Aligned_cols=197 Identities=52% Similarity=0.917 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 88999999599999998652069524799999749999997989998750899994568732014621579999999870
Q 000232 655 ATLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDS 734 (1822)
Q Consensus 655 ~~~e~~k~~K~~l~~~~~~FN~~p~~gi~~l~~~~~i~~~p~~iA~fL~~~~~L~k~~igeyLg~~~~~~~~vl~~yv~~ 734 (1822)
.+||+.|++|..+++|+.+||.||++||+||+++|+++++|++||+||+.+++|||++||+|||++++++.+||++|++.
T Consensus 10 ~~~~~~k~rK~~~~~g~~~FN~~PkkGi~~L~~~g~i~~~p~~iA~FL~~~~~L~k~~igeyLg~~~~fn~~vL~~yv~~ 89 (211)
T 3ltl_A 10 TQFEVLKQQKEIIEQGIDLFNKKPKRGIQYLQEQGMLGTTPEDIAQFLHQEERLDSTQVGEFLGDNDKFNKEVMYAYVDQ 89 (211)
T ss_dssp -----CCSHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTSCHHHHHHHHTCCSHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 07899999889999999998329999999999869989999999999984767549999998704662689999999985
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 699999906999998514768985578999999999999872999--999901799999999972210010001699887
Q 000232 735 FNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPS--SFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTK 812 (1822)
Q Consensus 735 ~df~~~~~~~ALR~fl~~frlpgE~q~idri~e~Fa~~y~~~Np~--~f~~~d~~y~laysiimLntdlHn~~vk~kmt~ 812 (1822)
|||+|++||+|||.||.+||||||+|+|||+||+||+|||+|||+ .|.|+|+||+|+||+||||||+|||++|+|||+
T Consensus 90 fdF~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~~~f~s~D~~~iLaySiImLNTDlHn~~vk~kMt~ 169 (211)
T 3ltl_A 90 HDFSGKDFVSALRMFLEGFRLPGEAQKIDRLMEKFAARYLECNQGQTLFASADTAYVLAYSIIMLTTDLHSPQVKNKMTK 169 (211)
T ss_dssp SCCCSSCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHTCTTCCSCSSHHHHHHHHHHHHHHHHHHTCTTCCSCCCH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 59889979999999997371798426999999999999998588877747888999999999998564148645689899
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 879873067889999989899999999872524557788
Q 000232 813 ADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADS 851 (1822)
Q Consensus 813 ~~Fi~n~~gi~~~~dlp~~~L~~iY~~I~~~ei~l~~~~ 851 (1822)
++||+|+||+|+|+|||+++|++||++|+.+||+|+++.
T Consensus 170 ~~Fi~n~rg~n~g~d~p~e~L~~iYd~I~~~ei~l~~~~ 208 (211)
T 3ltl_A 170 EQYIKMNRGINDSKDLPEEYLSAIYNEIAGKKISMKETK 208 (211)
T ss_dssp HHHHHHTCSSCSSSSCCHHHHHHHHHHHHHSCCCCC---
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999998654367899999999999999984876278998
No 2
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=1.00 E-value=1 Score=472.18 Aligned_cols=195 Identities=52% Similarity=0.876 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999599999998652069524799999749999997989998750899994568732014621579999999870699
Q 000232 658 EQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNF 737 (1822)
Q Consensus 658 e~~k~~K~~l~~~~~~FN~~p~~gi~~l~~~~~i~~~p~~iA~fL~~~~~L~k~~igeyLg~~~~~~~~vl~~yv~~~df 737 (1822)
++.+++|..+..|+.+||.+|++||+||+++|+++++|++||+||+.++||+|++||+|||++++++.+||++|++.|||
T Consensus 7 ~~~~~~k~~~~~g~~~FN~~PkkGi~~L~~~~~l~~~p~~iA~fL~~~~~l~k~~igeyLg~~~~~n~~vl~~y~~~fdF 86 (203)
T 1r8s_E 7 SKTLQRNRKMAMGRKKFNMDPKKGIQFLVENELLQNTPEEIARFLYKGEGLNKTAIGDYLGEREELNLAVLHAFVDLHEF 86 (203)
T ss_dssp ------CHHHHHHHHHHHHCHHHHHHHHHHTTSSCSSHHHHHHHHHHCTTCCHHHHHHHHTCCSHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 34888889999999998129999999999879999999999999987768589999999851443799999999996497
Q ss_pred CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 99990699999851476898557899999999999987299999990179999999997221001000169988787987
Q 000232 738 KGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIR 817 (1822)
Q Consensus 738 ~~~~~~~ALR~fl~~frlpgE~q~idri~e~Fa~~y~~~Np~~f~~~d~~y~laysiimLntdlHn~~vk~kmt~~~Fi~ 817 (1822)
+|++|++|||.||.+||||||+|+|||+|++||+|||+|||+.|.++|+||+|+||+||||||+|||++|+|||+++||+
T Consensus 87 ~~~~ld~ALR~fL~~f~LPgEaQ~IdRile~Fa~ry~~~Np~~f~s~D~~~vLaySiImLNTDlHn~~vk~kMt~~~Fi~ 166 (203)
T 1r8s_E 87 TDLNLVQALRQFLWSFRLPGKAQKIDRMMEAFAQRYCLCNPGVFQSTDTCYVLSYSVIMLNTDLHNPNVRDKMGLERFVA 166 (203)
T ss_dssp TTCCHHHHHHHHHHSSCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf 89968999999997261787168999999999999998497656781167999989988651004742223467999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 30678899999898999999998725245577888
Q 000232 818 NNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 852 (1822)
Q Consensus 818 n~~gi~~~~dlp~~~L~~iY~~I~~~ei~l~~~~~ 852 (1822)
|+||+|+|+|+|+++|++||++|+.+||+|++|+.
T Consensus 167 n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d~~ 201 (203)
T 1r8s_E 167 MNRGINEGGDLPEELLRNLYDSIRNEPFKIPEDDG 201 (203)
T ss_dssp HTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC--
T ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 86266578999999999999999848788965768
No 3
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=1.00 E-value=1 Score=463.02 Aligned_cols=196 Identities=36% Similarity=0.617 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC-CHHHHHHHHHCC-CCCCHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 89999995999999986520695247999997499999-979899987508-9999456873201462157999999987
Q 000232 656 TLEQRRAYKIELQKGISLFNRKPSKGIEFLINSKKVGD-SPEEVASFLKNT-TGLNETMIGDYLGEREEFSLKVMHAYVD 733 (1822)
Q Consensus 656 ~~e~~k~~K~~l~~~~~~FN~~p~~gi~~l~~~~~i~~-~p~~iA~fL~~~-~~L~k~~igeyLg~~~~~~~~vl~~yv~ 733 (1822)
.++++|++|..+.+|+.+||++||+||+||+++|++++ +|++||+||+.+ ++|||++||+|||+++ +.+||++|++
T Consensus 16 ~~~~~r~~K~~~~~~~~~FN~~PkkGI~~L~~~g~l~~~~~~~iA~fL~~~~~~L~k~~iGeyLg~~~--n~~vL~~yv~ 93 (230)
T 1ku1_A 16 PRGSHMDRKTEFIECTNAFNEKPKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPD--KVSLLNEYIR 93 (230)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSSCSSHHHHHHHHHHTTTTSCHHHHHHHHTCGG--GHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCC--HHHHHHHHHH
T ss_conf 99999999999999999995499999999998898389998999999997276569999999980821--7999999985
Q ss_pred HCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCC---------------CCCCCCCHHHHHHHHHHHHH
Q ss_conf 069999990699999851476898557899999999999987299---------------99999017999999999722
Q 000232 734 SFNFKGMDFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNP---------------SSFTSADTAYVLAYSVIMLN 798 (1822)
Q Consensus 734 ~~df~~~~~~~ALR~fl~~frlpgE~q~idri~e~Fa~~y~~~Np---------------~~f~~~d~~y~laysiimLn 798 (1822)
.|||+|++||+|||.||.+||||||+|+|||+||+||+|||+||| +.|.++|+||+|+||+||||
T Consensus 94 ~fdF~g~~ld~ALR~fL~~f~LPGEaQ~IdRile~Fa~rY~~~N~~~p~~~~~~~~~~~~~~f~s~D~vyvLaySiImLN 173 (230)
T 1ku1_A 94 LFDFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTVQPDADSVFILSYSIIMLN 173 (230)
T ss_dssp TSCCTTCCHHHHHHHHTTTCCCCSSHHHHHHHHHHHHHHHHHTSCCCGGGCCSCCTTCGGGCCCCHHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 42679997999999999808588519999999999999999818777532101001122345577028999999999980
Q ss_pred HHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 1001000169988787987306788999998989999999987252455778888
Q 000232 799 TDAHNSMVKDKMTKADFIRNNRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSA 853 (1822)
Q Consensus 799 tdlHn~~vk~kmt~~~Fi~n~~gi~~~~dlp~~~L~~iY~~I~~~ei~l~~~~~~ 853 (1822)
||+|||+||+|||+++||+|+||+|+|+|||++||++||++|+.+||+|++|+.+
T Consensus 174 TDlHnp~vk~kMT~~~FikN~rg~n~g~d~p~e~L~~iY~~I~~~ei~~~ee~~g 228 (230)
T 1ku1_A 174 TDLHNPQVKEHMSFEDYSGNLKGCCNHKDFPFWYLDRVYCSIRDKEIVMPEEHHG 228 (230)
T ss_dssp HHHTCTTCSSCCCHHHHHHHTTTCBTTBCCCHHHHHHHHHHHHHSCCCCC-----
T ss_pred HHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 1302643467777999999864656778888999999999998483468866779
No 4
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide exchange factor, signaling protein; 1.41A {Legionella pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Probab=1.00 E-value=1 Score=441.79 Aligned_cols=191 Identities=37% Similarity=0.623 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHCCC--CCCCHHHHHHHHHC-CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999986520695247999997499--99997989998750-899994568732014621579999999870699999
Q 000232 664 KIELQKGISLFNRKPSKGIEFLINSKK--VGDSPEEVASFLKN-TTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGM 740 (1822)
Q Consensus 664 K~~l~~~~~~FN~~p~~gi~~l~~~~~--i~~~p~~iA~fL~~-~~~L~k~~igeyLg~~~~~~~~vl~~yv~~~df~~~ 740 (1822)
|+...+|+.+||++|++||+||++.+. ..++|++||+||+. +++|||++||+|||+++++|.+||++|++.|||+|+
T Consensus 8 ~k~~~e~i~~FN~~PkkGI~~L~~~~~~~~~~~p~~IA~FL~~~~~~LdK~~IGeyLg~~~~~n~~VL~~yv~~fdF~g~ 87 (356)
T 1xsz_A 8 EKAQREIIEAFNAKPKNGINKIKEICEQYKISPNEEIAEFFHQQRKNLDLEAVGDYLSSPEAENQQVLKAFTSQMNFNGQ 87 (356)
T ss_dssp HHTHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTTTSCHHHHHHHHTCCSHHHHHHHHHHHHTSCCTTS
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999998159999999999860015899999999999845878899999999857845789999999996697999
Q ss_pred CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCHHHHHHH
Q ss_conf 9069999985147689855789999999999998729999999017999999999722100100016--99887879873
Q 000232 741 DFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVK--DKMTKADFIRN 818 (1822)
Q Consensus 741 ~~~~ALR~fl~~frlpgE~q~idri~e~Fa~~y~~~Np~~f~~~d~~y~laysiimLntdlHn~~vk--~kmt~~~Fi~n 818 (1822)
+||+|||.||.+||||||+|+|||+||+||+|||+|||+.|.++|++|+|+||+||||||+|||++| +|||+++||+|
T Consensus 88 ~ld~ALR~fL~~frLPGEaQ~IDRile~FA~rY~~~Np~~f~s~D~~yvLaySiImLNTDLHNpnvk~k~kMT~~dFikN 167 (356)
T 1xsz_A 88 SFVEGLRTFLKTFKLPGEAQKIDRLVQSFSGAYFQQNPDVVSNADAAYLLAFQTIMLNTDLHNPSIPEKNKMTVDGLKRN 167 (356)
T ss_dssp CHHHHHHHHHHTSCBCSSHHHHHHHHHHHHHHHHHHCTTTSSSHHHHHHHHHHHHHHHHHHHCTTSCGGGSCCHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 89999999998284885088999999999999997399866874389999999998621003865554578989999998
Q ss_pred HCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 067889999989899999999872524557788881
Q 000232 819 NRGIDDGKDLPEEYLGVLYDQIVKNEIKMNADSSAP 854 (1822)
Q Consensus 819 ~~gi~~~~dlp~~~L~~iY~~I~~~ei~l~~~~~~~ 854 (1822)
+||+|+|+|||+++|++||++|+.+||++...+..+
T Consensus 168 ~rgin~g~d~p~e~L~~iYd~I~~~ei~l~~~~~~p 203 (356)
T 1xsz_A 168 LRGGNNGGDFDAKFLEELYSEIKAKPFELNFVKTSP 203 (356)
T ss_dssp TTTTBTTBCCCHHHHHHHHHHHHHSCCCCCBCSSCS
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 544468788989999999999970877557755686
No 5
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=1.00 E-value=1 Score=441.05 Aligned_cols=192 Identities=51% Similarity=0.876 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 99599999998652069524799999749999997989998750899994568732014621579999999870699999
Q 000232 661 RAYKIELQKGISLFNRKPSKGIEFLINSKKVGDSPEEVASFLKNTTGLNETMIGDYLGEREEFSLKVMHAYVDSFNFKGM 740 (1822)
Q Consensus 661 k~~K~~l~~~~~~FN~~p~~gi~~l~~~~~i~~~p~~iA~fL~~~~~L~k~~igeyLg~~~~~~~~vl~~yv~~~df~~~ 740 (1822)
+++|..+.+|+.+||.+|++||+||+++|+++++|++||+||+.++||||.+||+|||+++++|.+||++|++.|||+|+
T Consensus 12 ~~~~~~~~~~~~~Fn~~p~~gi~~l~~~~~~~~~~~~ia~fl~~~~~l~k~~ig~~l~~~~~~~~~vl~~~~~~~~f~~~ 91 (347)
T 2r09_A 12 TQRNAQIAMGRKKFNMDPKKGIQFLIENDLLQSSPEDVAQFLYKGEGLNKTVIGDYLGERDDFNIKVLQAFVELHEFADL 91 (347)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHTTSSCCSHHHHHHHHHHCTTCCHHHHHHHHHCCSHHHHHHHHHHHHTSCCTTC
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 88999999999998239999999999879999999999999985727578999998658970689999999995386899
Q ss_pred CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
Q ss_conf 90699999851476898557899999999999987299999990179999999997221001000169988787987306
Q 000232 741 DFGHAIRFFLRGFRLPGEAQKIDRIMEKFAERYCKCNPSSFTSADTAYVLAYSVIMLNTDAHNSMVKDKMTKADFIRNNR 820 (1822)
Q Consensus 741 ~~~~ALR~fl~~frlpgE~q~idri~e~Fa~~y~~~Np~~f~~~d~~y~laysiimLntdlHn~~vk~kmt~~~Fi~n~~ 820 (1822)
+||+|||.||..||||||+|+|||+|++||+|||+|||+.|.++|++|+|+||+||||||+|||++|+|||+++||+|++
T Consensus 92 ~~~~alR~~l~~f~lpgE~q~idril~~Fa~~y~~~np~~~~~~d~~~~l~~siimLntdlhn~~~k~kmt~~~fi~n~~ 171 (347)
T 2r09_A 92 NLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDTCYVLSFAIIMLNTSLHNHNVRDKPTAERFITMNR 171 (347)
T ss_dssp CHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHTT
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 79999999997286897267899999999999998598656785489999999999705640530124587999998751
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 78899999898999999998725245577888
Q 000232 821 GIDDGKDLPEEYLGVLYDQIVKNEIKMNADSS 852 (1822)
Q Consensus 821 gi~~~~dlp~~~L~~iY~~I~~~ei~l~~~~~ 852 (1822)
|+|+|.|+|+++|+.+|++|+.+|+.+++++.
T Consensus 172 ~~~~~~~~p~e~L~~iY~~I~~~ei~~~~e~~ 203 (347)
T 2r09_A 172 GINEGGDLPEELLRNLYESIKNEPFKIPEDDG 203 (347)
T ss_dssp TTBTTBCCCHHHHHHHHHHHHHSCCCCTTCCS
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 12677778999999997743137654554455
No 6
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=51.54 Aligned_cols=233 Identities=11% Similarity=0.137 Sum_probs=93.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH
Q ss_conf 868999999999999981003456682--899999987420523789999999999999500686553550209999999
Q 000232 1242 SAEIRELIIRCISQMVLSRVSNVKSGW--KSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFTDCVKC 1319 (1822)
Q Consensus 1242 ~~eIre~iL~cl~qlI~~~~~~IkSGW--k~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~dlI~c 1319 (1822)
+.+++..+++.+..++..-+..++.-+ ..++.++.....++...+...+|.++..+...+...+. ..+..++..
T Consensus 599 d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~----~~l~~~lp~ 674 (852)
T 4fdd_A 599 DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVK----PCIADFMPI 674 (852)
T ss_dssp CTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTG----GGHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_conf 6119999999997899987476998836771899999983899844999999999999998168889----879999999
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 99987088895421889999999999820287533568988899999878998866677886531032799999877420
Q 000232 1320 LLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVPLLTGLSKLT 1399 (1822)
Q Consensus 1320 L~~F~~~~~d~niSL~AI~~L~~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~ 1399 (1822)
+.+.-.. .+..+.-.|+..+-.++..+... + ..+. -.++..|..+.
T Consensus 675 l~~~l~~-~~~~v~~~a~~alg~i~~~~~~~-~-----------------------------~p~~---~~il~~L~~~l 720 (852)
T 4fdd_A 675 LGTNLNP-EFISVCNNATWAIGEISIQMGIE-M-----------------------------QPYI---PMVLHQLVEII 720 (852)
T ss_dssp HHHTCCT-TSHHHHHHHHHHHHHHHHHHGGG-G-----------------------------GGGT---HHHHHHHHHHH
T ss_pred HHHHCCC-CCHHHHHHHHHHHHHHHHHHHHH-H-----------------------------HHHH---HHHHHHHHHHH
T ss_conf 9987694-20689999999999999971176-7-----------------------------8789---99999999985
Q ss_pred C--CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 6--87288989999999999985299999657999999857765621034578999999999998899964564089969
Q 000232 1400 S--DSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETA 1477 (1822)
Q Consensus 1400 ~--d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~~~~~~e~~~W~~eT~ 1477 (1822)
. +.+..|+..|+.++-++...++..+.+. +.+++-|.+..+... .+ .+-.
T Consensus 721 ~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~-----l~~~~~~~~~~l~~~------------------~d-----~~e~ 772 (852)
T 4fdd_A 721 NRPNTPKTLLENTAITIGRLGYVCPQEVAPM-----LQQFIRPWCTSLRNI------------------RD-----NEEK 772 (852)
T ss_dssp TCSSCCHHHHHHHHHHHHHHHHHCHHHHGGG-----HHHHHHHHHHHHHTS------------------CS-----SHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCHHHHCCC-----HHHHHHHHHHHHCCC------------------CC-----CHHH
T ss_conf 7998872077889999999998688976755-----899999999986536------------------66-----0799
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99999899987965210663599999999882427996066999999999999618999988799999
Q 000232 1478 AIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRLSQDEWREIL 1545 (1822)
Q Consensus 1478 ~lAL~~l~~lf~~yf~~l~~~l~~lL~lL~~~i~~~~~~ia~ig~~~L~~Li~~~~~~f~~~~W~~i~ 1545 (1822)
..|+++++.++.++=+.+...+..+++....+-. ++.++ -..|++++..-...+.++.|+.+.
T Consensus 773 ~~a~~~l~~li~~~p~~~~~~~~~~~~~~~~~~~-~~~~l----~~~~~~~l~~~~~~~~~~~~~~~~ 835 (852)
T 4fdd_A 773 DSAFRGICTMISVNPSGVIQDFIFFCDAVASWIN-PKDDL----RDMFCKILHGFKNQVGDENWRRFS 835 (852)
T ss_dssp HHHHHHHHHHHHHCGGGTGGGHHHHHHHHHTCSS-CCHHH----HHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCC-CCHHH----HHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 9999999999986918688889999999870689-97899----999999999998767720199998
No 7
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=1.00 E-value=1 Score=46.46 Aligned_cols=319 Identities=14% Similarity=0.159 Sum_probs=170.8
Q ss_pred CHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Q ss_conf 11357999999999823797--7679999999999999997205543020235554779999982059-86899999999
Q 000232 1176 VWSRMWNVLSDFFVSVGLSE--NLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIIMQKSG-SAEIRELIIRC 1252 (1822)
Q Consensus 1176 ~W~~IW~~L~~hf~~vg~h~--n~~ia~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPFe~im~~~~-~~eIre~iL~c 1252 (1822)
.|+.+...+ ......+ +..++..|+..|+.++-++-. +.+. .+-..++..|...+.... +.+||...++|
T Consensus 125 ~w~~ll~~L----~~~l~~~~~~~~~r~~al~~l~~l~~~~~~-~~~~--~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~ 197 (462)
T 1ibr_B 125 QWPELIPQL----VANVTNPNSTEHMKESTLEAIGYICQDIDP-EQLQ--DKSNEILTAIIQGMRKEEPSNNVKLAATNA 197 (462)
T ss_dssp CCTTHHHHH----HHHHHCTTCCHHHHHHHHHHHHHHHHHSCG-GGTG--GGHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred CCHHHHHHH----HHHHCCCCCCHHHHHHHHHHHHHHHHHCCC-HHHH--HHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 269999999----998626788789999999999999981871-5347--679999999999867999989999999999
Q ss_pred HHHHHHHHCCCCCCCC---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH-HHHHHHHHHHCCCC
Q ss_conf 9999981003456682---8999999874205237899999999999995006865535502099-99999999870888
Q 000232 1253 ISQMVLSRVSNVKSGW---KSVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETESTTFT-DCVKCLLTFTNSRF 1328 (1822)
Q Consensus 1253 l~qlI~~~~~~IkSGW---k~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~~~f~-dlI~cL~~F~~~~~ 1328 (1822)
+..++.....+. ..| ..+..++.....+.++.+...+++++..+...+...+. ..+. .++..+....+. .
T Consensus 198 l~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~----~~~~~~l~~~~~~~~~~-~ 271 (462)
T 1ibr_B 198 LLNSLEFTKANF-DKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME----TYMGPALFAITIEAMKS-D 271 (462)
T ss_dssp HHHHTTTTHHHH-TSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT----TTTTTTHHHHHHHHHHC-S
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC-C
T ss_conf 999999999843-23678989999999853799789999999999999999899999----88888999999999828-8
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHHHHHHHHH-HHHHC---CCCH
Q ss_conf 9542188999999999982028753356898889999987899886667788-65310327999998-77420---6872
Q 000232 1329 NSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSD-KDDNSSFWVPLLTG-LSKLT---SDSR 1403 (1822)
Q Consensus 1329 d~niSL~AI~~L~~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~lW~pLL~~-Ls~l~---~d~R 1403 (1822)
+.++...|++++..++........ .......+ .......... -..+..-.+|.+.. |.+.- .+..
T Consensus 272 ~~~v~~~a~~~l~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~ 341 (462)
T 1ibr_B 272 IDEVALQGIEFWSNVCDEEMDLAI-EASEAAEQ---------GRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDD 341 (462)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH-HHCCTTCS---------SSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HCCCCCCC---------CCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCC
T ss_conf 609999999999999998887887-60100003---------78863035999998766400799999874444444443
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHHHHHH
Q ss_conf 8898999999999998529999965799999985776562103457899999999999889996456408-996999999
Q 000232 1404 STIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWD-SETAAIGAE 1482 (1822)
Q Consensus 1404 ~EVR~~ALqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~~~~~~e~~~W~-~eT~~lAL~ 1482 (1822)
..+|..|...|-.+....|. .++. .++|.+..... + ..|. .+....++.
T Consensus 342 ~~~r~~a~~~L~~l~~~~~~--------~~~~-~~~~~l~~~l~------------------~---~~~~~r~aal~~l~ 391 (462)
T 1ibr_B 342 WNPCKAAGVCLMLLATCCED--------DIVP-HVLPFIKEHIK------------------N---PDWRYRDAAVMAFG 391 (462)
T ss_dssp CSHHHHHHHHHHHHHHHTTT--------THHH-HHHHHHHHHTT------------------C---SSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCH--------HHHH-HHHHHHHHHHC------------------C---CCHHHHHHHHHHHH
T ss_conf 32889999999999986358--------7899-99999999843------------------8---97589999999999
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHH
Q ss_conf 899987965210663599999999882427996066999999999999618999-9887999999999
Q 000232 1483 CLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGELGSRL-SQDEWREILLALK 1549 (1822)
Q Consensus 1483 ~l~~lf~~yf~~l~~~l~~lL~lL~~~i~~~~~~ia~ig~~~L~~Li~~~~~~f-~~~~W~~i~~~l~ 1549 (1822)
.+++-.. -+.+...+..++..+..++..++..+...++.+|.++....++.+ ....-..++..+.
T Consensus 392 ~l~~~~~--~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 392 CILEGPE--PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp HTSSSSC--TTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHH
T ss_pred HHHCCCC--HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 9864876--77789889999999999966997899999999999999862011465778999999999
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=44.62 Aligned_cols=23 Identities=4% Similarity=0.076 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHC-CCCC
Q ss_conf 2889899999999999852-9999
Q 000232 1403 RSTIRKSSLEVLFNILKDH-GHLF 1425 (1822)
Q Consensus 1403 R~EVR~~ALqtLF~iL~~~-G~~f 1425 (1822)
..+||..|+.+|-.+...+ |..|
T Consensus 795 ~~~vr~~a~~~l~~l~~~~~g~~~ 818 (861)
T 2bpt_A 795 EDATSRAAVGLIGDIAAMFPDGSI 818 (861)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTSTT
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 699999999999999988288248
No 9
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=43.46 Aligned_cols=108 Identities=11% Similarity=-0.038 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 68728898999999999998529999965799999985776562103457899999999999889996456408996999
Q 000232 1400 SDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGSTWDSETAAI 1479 (1822)
Q Consensus 1400 ~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~~~~~~e~~~W~~eT~~l 1479 (1822)
.+...+||+.|+..+-++....|..+.+- -..++. .|+++++. .+ .. + -..+++..
T Consensus 680 ~~~~~~v~~~a~~alg~i~~~~~~~~~p~-~~~il~-~L~~~l~~----~~----------------~~-~-~~~~~a~~ 735 (852)
T 4fdd_A 680 NPEFISVCNNATWAIGEISIQMGIEMQPY-IPMVLH-QLVEIINR----PN----------------TP-K-TLLENTAI 735 (852)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHGGGGGGG-THHHHH-HHHHHHTC----SS----------------CC-H-HHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHCC----CC----------------CC-C-HHHHHHHH
T ss_conf 94206899999999999999711767878-999999-99998579----98----------------87-2-07788999
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99989998796521066359999999988242-79960669999999999996189
Q 000232 1480 GAECLVDIFICFFDVVRSQLPGVVSILTGFIR-SPIQGPASTGVAALLHLAGELGS 1534 (1822)
Q Consensus 1480 AL~~l~~lf~~yf~~l~~~l~~lL~lL~~~i~-~~~~~ia~ig~~~L~~Li~~~~~ 1534 (1822)
++..++..+..++ .+.+.+++..+...+. ....+....+..+|..++..|.+
T Consensus 736 ~igrl~~~~~~~~---~~~l~~~~~~~~~~l~~~~d~~e~~~a~~~l~~li~~~p~ 788 (852)
T 4fdd_A 736 TIGRLGYVCPQEV---APMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788 (852)
T ss_dssp HHHHHHHHCHHHH---GGGHHHHHHHHHHHHHTSCSSHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHCHHHH---CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCHH
T ss_conf 9999998688976---7558999999999865366607999999999999986918
No 10
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=41.75 Aligned_cols=296 Identities=12% Similarity=0.118 Sum_probs=137.9
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHCHHHHHHHHHHHH
Q ss_conf 63009999999853123222311357999999999823797767999999999999999720554302023555477999
Q 000232 1155 RVFSLTKLVEIAHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFV 1234 (1822)
Q Consensus 1155 r~FsLqKLveIa~~Nm~Rirl~W~~IW~~L~~hf~~vg~h~n~~ia~~AiDsLrqLs~kfLe~eEL~~f~FQ~~fLkPFe 1234 (1822)
+.+.+.-+.++... ..|.. +.-+.+.|...-++++..|+..|...|..++..- ...|+..+.
T Consensus 835 ~~~~l~~l~~~g~~------~~~~~-~~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~-----------~~~~lp~ll 896 (1230)
T 1u6g_C 835 RLLALLSLGEVGHH------IDLSG-QLELKSVILEAFSSPSEEVKSAASYALGSISVGN-----------LPEYLPFVL 896 (1230)
T ss_dssp HHHHHHHHHHHHHH------SCCCS-CTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHT-----------HHHHHHHHH
T ss_pred HHHHHHHHHHHCCC------CCCCC-CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC-----------HHHHHHHHH
T ss_conf 99999999986156------78765-6418999999847997789999999968775269-----------998899999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99820598689999999999999810034566828----99999987420523789999999999999500686553550
Q 000232 1235 IIMQKSGSAEIRELIIRCISQMVLSRVSNVKSGWK----SVFSIFTAAAADERKNIVLLAFETMEKIVREYFPHITETES 1310 (1822)
Q Consensus 1235 ~im~~~~~~eIre~iL~cl~qlI~~~~~~IkSGWk----~IF~iL~~aa~~~~~~iV~~aF~~l~~I~~d~l~~l~~~~~ 1310 (1822)
..+.. ..+.|...+.++.+++...+ ...++ .|+..|-....+.++.+-..+=+++..++.....
T Consensus 897 ~~l~~--~~~~~~~~l~al~e~i~~~~---~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~~~~------- 964 (1230)
T 1u6g_C 897 QEITS--QPKRQYLLLHSLKEIISSAS---VVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE------- 964 (1230)
T ss_dssp HHHHS--CGGGHHHHHHHHHHHHHSSC---STTTHHHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHSSGG-------
T ss_pred HHHHC--CCHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHH-------
T ss_conf 98726--60324988999999982387---6667766999999999873383044689999887566506768-------
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 20999999999987088895421889999999999820287533568988899999878998866677886531032799
Q 000232 1311 TTFTDCVKCLLTFTNSRFNSDVCLNAIAFLRFCAVKLADGGLVCNEKGSVDGSSSPPVNDNAPDLQSFSDKDDNSSFWVP 1390 (1822)
Q Consensus 1311 ~~f~dlI~cL~~F~~~~~d~niSL~AI~~L~~~~d~L~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~lW~p 1390 (1822)
.-+..+. ++.+ +.+- .+. +.+...+.. .+ . + .......+.-+
T Consensus 965 ~l~p~l~----~~l~---~~~~---~~R--~~~~~~l~~-~~--~------------------~-----~~~~~~~~l~~ 1006 (1230)
T 1u6g_C 965 TLLPRLK----GYLI---SGSS---YAR--SSVVTAVKF-TI--S------------------D-----HPQPIDPLLKN 1006 (1230)
T ss_dssp GTHHHHT----TTSS---SSCH---HHH--HHHHHHTGG-GC--C------------------S-----SCCTHHHHHHH
T ss_pred HHHHHHH----HHHC---CCCH---HHH--HHHHHHHHH-HH--C------------------C-----CCHHHHHHHHH
T ss_conf 8889999----9856---9978---899--999999999-97--0------------------6-----82335898999
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99987742068728898999999999998529999965799999985776562103457899999999999889996456
Q 000232 1391 LLTGLSKLTSDSRSTIRKSSLEVLFNILKDHGHLFPRQFWMGVYSHVIFPIFNGVCDKKDMPDKDEPDSPTSHSPLSEGS 1470 (1822)
Q Consensus 1391 LL~~Ls~l~~d~R~EVR~~ALqtLF~iL~~~G~~f~~~~W~~i~~~VLfPifd~l~~~~~~~~~~~~~~~~~~~~~~e~~ 1470 (1822)
++..|.....|+.++||..|+.+|-.+....+..+.+ .+..+|=+++.......+.. +.-+-.|-.| . ..
T Consensus 1007 ~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~-----~l~~~lp~l~~~~~~~~~~~-~~v~~gp~k~---~-vd 1076 (1230)
T 1u6g_C 1007 CIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRD-----LLDTVLPHLYNETKVRKELI-REVEMGPFKH---T-VD 1076 (1230)
T ss_dssp HSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGG-----GHHHHHHHHHHTTSCCGGGE-EEEEETTEEE---E-EE
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHH-----HHHHHHHHHHHHHCCCHHHH-EEECCCCCCC---C-CC
T ss_conf 8999998648985879999999999998428576897-----79889899998830268760-1330589602---3-67
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 40899699999989998796521066359999999988242799606699999999999961
Q 000232 1471 TWDSETAAIGAECLVDIFICFFDVVRSQLPGVVSILTGFIRSPIQGPASTGVAALLHLAGEL 1532 (1822)
Q Consensus 1471 ~W~~eT~~lAL~~l~~lf~~yf~~l~~~l~~lL~lL~~~i~~~~~~ia~ig~~~L~~Li~~~ 1532 (1822)
.-+ +...-|...+..++.+.++.+. +..++.....-+..+ +++.......+.+|+..+
T Consensus 1077 ~~l-~~rk~a~~~~~~ll~~~~~~i~--~~~~~~~~~~gl~d~-~di~~~~~~~l~~l~~~~ 1134 (1230)
T 1u6g_C 1077 DGL-DIRKAAFECMYTLLDSCLDRLD--IFEFLNHVEDGLKDH-YDIKMLTFLMLVRLSTLC 1134 (1230)
T ss_dssp THH-HHHHHHHHHHHHHHHSSCSSSC--HHHHHHHHHHTTSSC-HHHHHHHHHHHHHHHHSC
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHCCCCCH-HHHHHHHHHHHHHHHHCC
T ss_conf 748-9999999999999998887478--999999998046766-889999999999998408
Done!