BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000234
(1816 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O04716|MSH6_ARATH DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana GN=MSH6
PE=1 SV=2
Length = 1324
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 36/49 (73%)
Query: 484 VLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLENER 532
V+ ++++V+WPLD+ WY G V YDKG+ H V+Y+D +EE ++L E+
Sbjct: 124 VVGKQVRVYWPLDKKWYDGSVTFYDKGEGKHVVEYEDGEEESLDLGKEK 172
>sp|P0CB22|ATX2_ARATH Histone-lysine N-methyltransferase ATX2 OS=Arabidopsis thaliana
GN=ATX2 PE=2 SV=1
Length = 1083
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%)
Query: 488 RIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLENERFKLLL 537
+ KVFWPLD WY G + Y+ K H VKY D D E + L E+ K L+
Sbjct: 224 QCKVFWPLDAVWYPGSIVGYNVETKHHIVKYGDGDGEELALRREKIKFLI 273
>sp|Q9C5X4|ATX1_ARATH Histone-lysine N-methyltransferase ATX1 OS=Arabidopsis thaliana
GN=ATX1 PE=1 SV=2
Length = 1062
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%)
Query: 465 SRKRRHYYEIFSGDLDGFWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEE 524
SR + + + +D + + KVFWPLD WY G + Y +K + VKY D +E
Sbjct: 187 SRSAKKWVRLSYDGVDPTSFIGLQCKVFWPLDALWYEGSIVGYSAERKRYTVKYRDGCDE 246
Query: 525 WINLENERFKLLL 537
I + E K L+
Sbjct: 247 DIVFDREMIKFLV 259
>sp|Q7S747|EPL1_NEUCR Enhancer of polycomb-like protein 1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=epl-1 PE=3 SV=1
Length = 589
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 29/167 (17%)
Query: 1379 EMHEECYNRNIRAASVKNIPIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVEMALDP 1438
E H + + A+ + IP+P E D + V +S Y R +T VE +
Sbjct: 50 EYHLQAVLKGAGVAADQEIPVPPPQQ-SELDYDQFYPQKVAKTSTYIRFSQT-VEECIS- 106
Query: 1439 SRVLYDMDSDDEQWL----LKIRSSSEADDCGLSEISEEIFEKIIDIFEKAAYS----QQ 1490
LYDM DDE +L +K+ S+ +SE+ FE+I+D++E A +
Sbjct: 107 --CLYDMTEDDETFLKSYNMKLTPSAR--------LSEDDFERIMDVYEDMAANITPFSA 156
Query: 1491 RDQFTSNEIEELMAGVGSMEAIKV------IYEHWRQKR-LKKGMPL 1530
DQ T +E++ G+ +++ KV IYE+W+ +R + K PL
Sbjct: 157 IDQ-TVPSYQEMLRGLEPLDSTKVMVHAKQIYEYWKSRREISKNRPL 202
>sp|P55201|BRPF1_HUMAN Peregrin OS=Homo sapiens GN=BRPF1 PE=1 SV=2
Length = 1214
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 1422 SKYFRQVETDVEMALDPSRVLYDMDSDDEQWL--LKIRSSSEADDCGLSEISEEIFEKII 1479
+ Y+R +E E LD V YDMD +D WL + R +E G+S I +EIFE ++
Sbjct: 196 TSYYRYIEKSAE-ELD-EEVEYDMDEEDYIWLDIMNERRKTE----GVSPIPQEIFEYLM 249
Query: 1480 DIFEKAAYSQQRDQFTSNEI 1499
D EK +Y + ++ N +
Sbjct: 250 DRLEKESYFESHNKGDPNAL 269
>sp|Q4I5V3|EPL1_GIBZE Enhancer of polycomb-like protein 1 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=EPL1 PE=3 SV=2
Length = 590
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 21/161 (13%)
Query: 1379 EMHEECYNRNIRAASVKNIPIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVEMALDP 1438
E H + + ++ + IP+P + D++ V F + SS Y R +T VE +
Sbjct: 50 EYHLQTILKEAGTSNDQEIPVPPPQESDINYDDLYPVPFHKPSS-YIRFSQT-VEECIT- 106
Query: 1439 SRVLYDMDSDDEQWLLKIRSSSEADDCGLSEISEEIFEKIIDIFEKAAYSQQRDQFTSNE 1498
LYDM ++D+++L + S A G+ +SE+ FE I+++FE A Q N
Sbjct: 107 --CLYDMTTEDDEFLKQYNSKPPA--TGV--LSEDDFEHIMEVFEDTAAEQTPFAAVDNT 160
Query: 1499 I---EELMAGV---------GSMEAIKVIYEHWRQKRLKKG 1527
+ + ++ G+ ++ K +YE+W+ +R + G
Sbjct: 161 VAAYDMMLPGLTHLNQSVSTDVLQHAKPVYEYWKSRRQEAG 201
>sp|O95696|BRD1_HUMAN Bromodomain-containing protein 1 OS=Homo sapiens GN=BRD1 PE=1 SV=1
Length = 1058
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 1392 ASVKNIPIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDVEMALDPSRVLYDMDSDDEQ 1451
AS +P P V ++E + V Y++ +E E LD + V YDMD +D
Sbjct: 112 ASASALPEPKVRIVEYSPPSAPRRPPV-----YYKFIEKSAE-ELD-NEVEYDMDEEDYA 164
Query: 1452 WLLKIRSSSEADDCGLSEISEEIFEKIIDIFEKAAYSQQRDQ 1493
W L+I + DC + +S+ +FE ++D FEK ++ + + Q
Sbjct: 165 W-LEIVNEKRKGDC-VPAVSQSMFEFLMDRFEKESHCENQKQ 204
>sp|Q9ULD4|BRPF3_HUMAN Bromodomain and PHD finger-containing protein 3 OS=Homo sapiens
GN=BRPF3 PE=1 SV=2
Length = 1205
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 1422 SKYFRQVETDVEMALDPSRVLYDMDSDDEQWLLKIRSSSEADDCGLSEISEEIFEKIIDI 1481
+ Y+R +E E LD + V YDMD +D WL + D G S +S + FE ++D
Sbjct: 135 AAYYRYIEKPPE-DLD-AEVEYDMDEEDLAWLDMVNEKRRVD--GHSLVSADTFELLVDR 190
Query: 1482 FEKAAYSQQR 1491
EK +Y + R
Sbjct: 191 LEKESYLESR 200
>sp|Q92613|JADE3_HUMAN Protein Jade-3 OS=Homo sapiens GN=PHF16 PE=1 SV=1
Length = 823
Score = 37.7 bits (86), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 1374 WALFKEMHEECYNRNIRA-ASVKNIPIPGVCLIEEFDDNVTEVAFVRSSSKYFRQVETDV 1432
+ LF + +E + + ++ AS +P P + +I E V +V F+R KY D
Sbjct: 65 YYLFADTWKEEWEKGVQVPASPDTVPQPSLRIIAE---KVKDVLFIRPR-KYIHCSSPDT 120
Query: 1433 E-------MALDPSRVLYDMDSDDEQWLLKIRSSSEADDCGLSEISEEIFEKIIDIFEKA 1485
M L S YD+D D WL ++ CG + E + EK +++ E+
Sbjct: 121 TEPGYINIMELAASVCRYDLDDMDIFWLQELNEDLAEMGCG--PVDENLMEKTVEVLERH 178
Query: 1486 AYSQQRDQFTSNE 1498
+ + E
Sbjct: 179 CHENMNHAIETEE 191
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 691,644,561
Number of Sequences: 539616
Number of extensions: 30553966
Number of successful extensions: 81598
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 340
Number of HSP's that attempted gapping in prelim test: 74179
Number of HSP's gapped (non-prelim): 5091
length of query: 1816
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1684
effective length of database: 120,340,147
effective search space: 202652807548
effective search space used: 202652807548
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 69 (31.2 bits)