Query 000234
Match_columns 1816
No_of_seqs 258 out of 426
Neff 2.7
Searched_HMMs 29240
Date Tue Mar 26 16:05:11 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000234.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_14-17//hhsearch_pdb/000234hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ldm_A Uncharacterized protein 1.0 1 1 44.1 0.0 47 482-530 6-52 (81)
2 3qii_A PHD finger protein 20; 1.0 1 1 43.7 6.7 55 474-530 13-67 (85)
3 2g3r_A Tumor suppressor P53-bi 1.0 1 1 43.0 5.8 46 481-527 3-48 (123)
4 3p8d_A Medulloblastoma antigen 1.0 1 1 42.5 6.8 49 480-530 4-52 (67)
5 2equ_A PHD finger protein 20-l 1.0 1 1 42.4 6.1 53 480-536 7-59 (74)
6 2l8d_A Lamin-B receptor; DNA b 1.0 1 1 40.6 6.7 48 482-529 9-56 (66)
7 2dig_A Lamin-B receptor; tudor 1.0 1 1 40.3 6.9 47 482-528 12-58 (68)
8 1mhn_A SurviVal motor neuron p 1.0 1 1 38.6 6.4 48 483-530 4-52 (59)
9 4a4f_A SurviVal of motor neuro 1.0 1 1 38.5 6.4 49 482-530 8-57 (64)
10 1ssf_A Transformation related 1.0 1 1 38.3 6.2 49 480-529 6-54 (156)
No 1
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=44.12 Aligned_cols=47 Identities=17% Similarity=0.251 Sum_probs=40.3
Q ss_pred CCCCCCEEEEECCCCCCEEEEEEEEEECCCCEEEEECCCCCCEEEECCC
Q ss_conf 6444753899737999558689887418997189984589800351476
Q 000234 482 FWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLEN 530 (1816)
Q Consensus 482 e~LVGrRVkVfWPlD~~WY~GtVtsYDp~tkkH~V~YDDGDeE~L~Ls~ 530 (1816)
..-+|.+|.-.|. |..||.++|+..+.. +.+.|.|+||..|.|.+..
T Consensus 6 ~~kvGd~clAkws-Dg~wY~A~I~~v~~~-~~y~V~F~DGn~E~V~~s~ 52 (81)
T 2ldm_A 6 EFQINEQVLASWS-DSRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHIH 52 (81)
No 2
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=43.75 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=46.1
Q ss_pred ECCCCCCCCCCCCCEEEEECCCCCCEEEEEEEEEECCCCEEEEECCCCCCEEEECCC
Q ss_conf 036899986444753899737999558689887418997189984589800351476
Q 000234 474 IFSGDLDGFWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLEN 530 (1816)
Q Consensus 474 i~~~dvDpe~LVGrRVkVfWPlD~~WY~GtVtsYDp~tkkH~V~YDDGDeE~L~Ls~ 530 (1816)
+...+......||.+|.-.| .|..||+++|++.+.. +.+.|.|+||..|.|....
T Consensus 13 ~~~~~~~~~f~vGd~VlArW-~D~~yYPAkI~sV~~~-~~YtV~F~DG~~etvk~~~ 67 (85)
T 3qii_A 13 LYFQGGSSEFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHIH 67 (85)
T ss_dssp --------CCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGGG
T ss_pred CCCCCCCCCCCCCCEEEEEE-CCCCEEEEEEEEECCC-CEEEEEEECCCEEEECHHH
T ss_conf 67344774134599999993-8998856899998799-7199999389768966899
No 3
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=1.00 E-value=1 Score=43.02 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=40.2
Q ss_pred CCCCCCCEEEEECCCCCCEEEEEEEEEECCCCEEEEECCCCCCEEEE
Q ss_conf 86444753899737999558689887418997189984589800351
Q 000234 481 GFWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWIN 527 (1816)
Q Consensus 481 pe~LVGrRVkVfWPlD~~WY~GtVtsYDp~tkkH~V~YDDGDeE~L~ 527 (1816)
+..++|.||-..|++|.-||+|+|+.. ...++++|.+|||++-.|.
T Consensus 3 ~~~~~G~rV~AkWsdn~~yYpG~V~~~-~~~~ky~V~FdDg~~~~v~ 48 (123)
T 2g3r_A 3 MNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDVL 48 (123)
T ss_dssp --CCTTCEEEEECTTTCCEEEEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred CCCCCCEEEEEEECCCCCCCCCEEEEE-CCCCEEEEEECCCCEEEEE
T ss_conf 756431089999146894736489973-1697699997489733750
No 4
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=42.46 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=43.3
Q ss_pred CCCCCCCCEEEEECCCCCCEEEEEEEEEECCCCEEEEECCCCCCEEEECCC
Q ss_conf 986444753899737999558689887418997189984589800351476
Q 000234 480 DGFWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLEN 530 (1816)
Q Consensus 480 Dpe~LVGrRVkVfWPlD~~WY~GtVtsYDp~tkkH~V~YDDGDeE~L~Ls~ 530 (1816)
-+...||.+|.-.| .|..||+|+|++.+.. +.+.|.|+||..|.|.+..
T Consensus 4 ~~~~~vGd~vmArW-~D~~yYpA~I~si~~~-~~Y~V~F~dG~~etvk~~~ 52 (67)
T 3p8d_A 4 SSEFQINEQVLACW-SDCRFYPAKVTAVNKD-GTYTVKFYDGVVQTVKHIH 52 (67)
T ss_dssp -CCCCTTCEEEEEC-TTSCEEEEEEEEECTT-SEEEEEETTSCEEEEEGGG
T ss_pred CCCCCCCCEEEEEC-CCCCEEEEEEEEECCC-CEEEEEEECCCEEEEEHHH
T ss_conf 76244699999991-7998756899998799-7299999489669971899
No 5
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=42.37 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=43.3
Q ss_pred CCCCCCCCEEEEECCCCCCEEEEEEEEEECCCCEEEEECCCCCCEEEECCCCCEEEE
Q ss_conf 986444753899737999558689887418997189984589800351476508997
Q 000234 480 DGFWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLENERFKLL 536 (1816)
Q Consensus 480 Dpe~LVGrRVkVfWPlD~~WY~GtVtsYDp~tkkH~V~YDDGDeE~L~Ls~EKvklL 536 (1816)
....-||.+|.-.|. |+.||.++|+..+.. +...|.|+|+..|.|... .++-+
T Consensus 7 ~~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~-~~~~V~f~Dyn~e~v~~~--~lrpl 59 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DCRYYPAKIEAINKE-GTFTVQFYDGVIRCLKRM--HIKAM 59 (74)
T ss_dssp CCCCCTTCEEEEECS-SSSEEEEEEEEESTT-SSEEEEETTSCEEEECGG--GEECC
T ss_pred CCCCCCCCEEEEECC-CCCEEEEEEEEECCC-CEEEEEEECCCEEEECHH--HCEEC
T ss_conf 879899999999988-999899999997799-979999943973782589--97018
No 6
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=1.00 E-value=1 Score=40.61 Aligned_cols=48 Identities=25% Similarity=0.314 Sum_probs=42.6
Q ss_pred CCCCCCEEEEECCCCCCEEEEEEEEEECCCCEEEEECCCCCCEEEECC
Q ss_conf 644475389973799955868988741899718998458980035147
Q 000234 482 FWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLE 529 (1816)
Q Consensus 482 e~LVGrRVkVfWPlD~~WY~GtVtsYDp~tkkH~V~YDDGDeE~L~Ls 529 (1816)
.-.||--|.-.||.|+.||++.|++++...-.+.|.|-||.+|.|.-.
T Consensus 9 ~~~vgd~VmaRW~Gd~~yYparI~Si~s~~~~Y~V~fKdgT~e~L~~k 56 (66)
T 2l8d_A 9 KYADGEVVMGRWPGSVLYYEVQVTSYDDASHLYTVKYKDGTELALKES 56 (66)
T ss_dssp SSCSSCEEEEECTTSSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGG
T ss_pred EEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEECHH
T ss_conf 764299999873797631178999861689659999667988763133
No 7
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=1.00 E-value=1 Score=40.28 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=42.3
Q ss_pred CCCCCCEEEEECCCCCCEEEEEEEEEECCCCEEEEECCCCCCEEEEC
Q ss_conf 64447538997379995586898874189971899845898003514
Q 000234 482 FWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINL 528 (1816)
Q Consensus 482 e~LVGrRVkVfWPlD~~WY~GtVtsYDp~tkkH~V~YDDGDeE~L~L 528 (1816)
...||-.|.-.||.|+.||++.|++++...-.+.|.|-||.+|.|.-
T Consensus 12 ~f~vgd~VmaRW~Gd~~yYparItSits~~~~Y~VkfKdgT~e~L~~ 58 (68)
T 2dig_A 12 KFADGEVVRGRWPGSSLYYEVEILSHDSTSQLYTVKYKDGTELELKE 58 (68)
T ss_dssp SSCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEECTTSCEEEEET
T ss_pred EEECCCEEEEECCCCCCCEEEEEEEECCCCCEEEEEECCCCEEEECH
T ss_conf 76239999987258763107899986168965999966798877305
No 8
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=1.00 E-value=1 Score=38.62 Aligned_cols=48 Identities=23% Similarity=0.458 Sum_probs=42.8
Q ss_pred CCCCCEEEEECCCCCCEEEEEEEEEECCCCEEEEECCC-CCCEEEECCC
Q ss_conf 44475389973799955868988741899718998458-9800351476
Q 000234 483 WVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDD-RDEEWINLEN 530 (1816)
Q Consensus 483 ~LVGrRVkVfWPlD~~WY~GtVtsYDp~tkkH~V~YDD-GDeE~L~Ls~ 530 (1816)
.-+|..|...|..|+.||.++|...++..+...|.|.| |..|.|.+..
T Consensus 4 ~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~ 52 (59)
T 1mhn_A 4 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSD 52 (59)
T ss_dssp CCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEECCCCEEEECHHH
T ss_conf 8749999999998997999999997189999999998589989986999
No 9
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=1.00 E-value=1 Score=38.52 Aligned_cols=49 Identities=16% Similarity=0.334 Sum_probs=43.2
Q ss_pred CCCCCCEEEEECCCCCCEEEEEEEEEECCCCEEEEECCC-CCCEEEECCC
Q ss_conf 644475389973799955868988741899718998458-9800351476
Q 000234 482 FWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDD-RDEEWINLEN 530 (1816)
Q Consensus 482 e~LVGrRVkVfWPlD~~WY~GtVtsYDp~tkkH~V~YDD-GDeE~L~Ls~ 530 (1816)
..-+|..|...|..|+.||.++|...++..+...|.|.| |..|.|.+..
T Consensus 8 ~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~ 57 (64)
T 4a4f_A 8 SWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLN 57 (64)
T ss_dssp CCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGG
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEECCCCCEEEEEEEECCCEEEEEHHH
T ss_conf 89989999999998898999999997289998999999259989984899
No 10
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=1.00 E-value=1 Score=38.34 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=41.7
Q ss_pred CCCCCCCCEEEEECCCCCCEEEEEEEEEECCCCEEEEECCCCCCEEEECC
Q ss_conf 98644475389973799955868988741899718998458980035147
Q 000234 480 DGFWVLKRRIKVFWPLDQCWYYGLVDDYDKGKKLHHVKYDDRDEEWINLE 529 (1816)
Q Consensus 480 Dpe~LVGrRVkVfWPlD~~WY~GtVtsYDp~tkkH~V~YDDGDeE~L~Ls 529 (1816)
.+...||.||--.|.++.-||.|+|+.+ ....++.|.+|||.+-.|...
T Consensus 6 ~~~~~iG~rVfArWsd~~yyYpG~V~~~-~~~~~Y~V~FdDG~~k~v~~~ 54 (156)
T 1ssf_A 6 SGNSFVGLRVVAKWSSNGYFYSGKITRD-VGAGKYKLLFDDGYECDVLGK 54 (156)
T ss_dssp --CCSTTCEEEECSSCSSEEEEEEEEEC-CTTTEEEEECTTSCEEEEETT
T ss_pred CCCCHHCCEEEEECCCCCCCCCCEEEEE-CCCCEEEEEECCCCEEEEECC
T ss_conf 7756102489999677995025189984-269989999738976486045
Done!