Your job contains 1 sequence.
>000235
MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK
FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI
EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR
PDWMILQVLPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHI
ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTIN
IDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRY
LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP
YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR
DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD
NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL
VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME
SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG
KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS
ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE
FDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGD
SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ
KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS
IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERA
KNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLL
RIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELN
DESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR
RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET
VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL
EFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSP
SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT
SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY
SPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPS
YSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDS
TTKDDKNTKGDKSSR
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000235
(1815 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
DICTYBASE|DDB_G0279193 - symbol:rpb1 "RNA polymerase II c... 4220 0. 2
UNIPROTKB|G3MZY8 - symbol:POLR2A "DNA-directed RNA polyme... 3907 0. 2
UNIPROTKB|F1PGS0 - symbol:POLR2A "DNA-directed RNA polyme... 3896 0. 2
UNIPROTKB|J9NW09 - symbol:POLR2A "DNA-directed RNA polyme... 3896 0. 2
RGD|1587326 - symbol:Polr2a "polymerase (RNA) II (DNA dir... 3896 0. 2
UNIPROTKB|P24928 - symbol:POLR2A "DNA-directed RNA polyme... 3895 0. 2
MGI|MGI:98086 - symbol:Polr2a "polymerase (RNA) II (DNA d... 3895 0. 2
ZFIN|ZDB-GENE-041008-78 - symbol:polr2a "polymerase (RNA)... 3859 0. 2
FB|FBgn0003277 - symbol:RpII215 "RNA polymerase II 215kD ... 3850 0. 2
POMBASE|SPBC28F2.12 - symbol:rpb1 "RNA polymerase II larg... 3803 0. 2
WB|WBGene00000123 - symbol:ama-1 species:6239 "Caenorhabd... 3701 0. 2
UNIPROTKB|P16356 - symbol:ama-1 "DNA-directed RNA polymer... 3701 0. 2
CGD|CAL0000919 - symbol:RPO21 species:5476 "Candida albic... 3699 0. 2
UNIPROTKB|Q5ACI7 - symbol:RPO21 "DNA-directed RNA polymer... 3699 0. 2
SGD|S000002299 - symbol:RPO21 "RNA polymerase II largest ... 3506 0. 2
ASPGD|ASPL0000054301 - symbol:AN0809 species:162425 "Emer... 3434 0. 2
UNIPROTKB|G4MT89 - symbol:MGG_04652 "DNA-directed RNA pol... 3259 0. 2
UNIPROTKB|I3LJR4 - symbol:POLR2A "DNA-directed RNA polyme... 2909 4.0e-303 1
CGD|CAL0002215 - symbol:orf19.3103 species:5476 "Candida ... 1263 2.6e-207 3
ASPGD|ASPL0000047704 - symbol:AN10316 species:162425 "Eme... 1298 4.3e-205 3
SGD|S000005642 - symbol:RPO31 "RNA polymerase III largest... 1219 1.9e-202 3
DICTYBASE|DDB_G0277199 - symbol:rpc1 "RNA polymerase III,... 1954 6.4e-202 1
WB|WBGene00004411 - symbol:rpc-1 species:6239 "Caenorhabd... 1333 1.9e-198 3
GENEDB_PFALCIPARUM|PF13_0150 - symbol:PF13_0150 "DNA-dire... 986 1.3e-181 6
UNIPROTKB|Q8IE49 - symbol:PF13_0150 "DNA-directed RNA pol... 986 1.3e-181 6
UNIPROTKB|J9P629 - symbol:POLR3A "DNA-directed RNA polyme... 1280 4.5e-178 2
UNIPROTKB|A4IF62 - symbol:POLR3A "DNA-directed RNA polyme... 1280 4.5e-178 2
UNIPROTKB|O14802 - symbol:POLR3A "DNA-directed RNA polyme... 1286 5.7e-178 2
UNIPROTKB|F1S2E6 - symbol:POLR3A "DNA-directed RNA polyme... 1281 7.2e-178 2
ZFIN|ZDB-GENE-050208-103 - symbol:polr3a "polymerase (RNA... 1269 3.6e-176 2
UNIPROTKB|F1NIK7 - symbol:POLR3A "DNA-directed RNA polyme... 1268 1.2e-175 2
POMBASE|SPBC651.08c - symbol:rpc1 "DNA-directed RNA polym... 1282 2.5e-175 2
UNIPROTKB|Q5ZL98 - symbol:POLR3A "DNA-directed RNA polyme... 1262 5.2e-175 2
UNIPROTKB|E9PTB6 - symbol:Polr3a "DNA-directed RNA polyme... 1279 3.6e-174 2
FB|FBgn0030687 - symbol:CG17209 species:7227 "Drosophila ... 1253 6.7e-173 2
UNIPROTKB|Q6NX41 - symbol:POLR2A "DNA-directed RNA polyme... 1648 1.7e-169 1
UNIPROTKB|E2QXD8 - symbol:POLR3A "DNA-directed RNA polyme... 1269 2.5e-167 3
FB|FBgn0019938 - symbol:RpI1 "RNA polymerase I subunit" s... 690 5.3e-137 4
UNIPROTKB|F1SVC3 - symbol:POLR1A "DNA-directed RNA polyme... 608 1.8e-123 4
UNIPROTKB|G3V7B7 - symbol:Polr1a "DNA-directed RNA polyme... 621 3.9e-123 4
RGD|620824 - symbol:Polr1a "polymerase (RNA) I polypeptid... 617 1.1e-122 4
UNIPROTKB|B9ZVN9 - symbol:POLR1A "DNA-directed RNA polyme... 488 2.1e-122 6
UNIPROTKB|O95602 - symbol:POLR1A "DNA-directed RNA polyme... 488 3.0e-122 6
WB|WBGene00012999 - symbol:rpoa-1 species:6239 "Caenorhab... 501 1.2e-121 5
UNIPROTKB|J9P5G4 - symbol:POLR1A "DNA-directed RNA polyme... 484 1.2e-120 6
UNIPROTKB|E2R0G4 - symbol:POLR1A "DNA-directed RNA polyme... 484 1.3e-120 6
UNIPROTKB|E1BIX2 - symbol:POLR1A "DNA-directed RNA polyme... 592 1.9e-120 4
ZFIN|ZDB-GENE-030131-5286 - symbol:polr1a "polymerase (RN... 458 1.5e-119 6
MGI|MGI:1096397 - symbol:Polr1a "polymerase (RNA) I polyp... 485 1.3e-118 7
UNIPROTKB|G4NBX7 - symbol:MGG_01158 "DNA-directed RNA pol... 459 3.4e-118 5
SGD|S000005868 - symbol:RPA190 "RNA polymerase I largest ... 465 1.4e-113 6
DICTYBASE|DDB_G0275759 - symbol:rpa1 "RNA polymerase I, l... 462 4.7e-112 5
TAIR|locus:2076661 - symbol:NRPA1 "nuclear RNA polymerase... 370 2.1e-106 7
CGD|CAL0001661 - symbol:RPA190 species:5476 "Candida albi... 453 2.3e-106 4
POMBASE|SPBC4C3.05c - symbol:nuc1 "DNA-directed RNA polym... 409 1.4e-98 6
UNIPROTKB|F1LQN7 - symbol:Polr1a "DNA-directed RNA polyme... 481 1.9e-63 4
UNIPROTKB|F1NJE0 - symbol:POLR1A "DNA-directed RNA polyme... 377 9.5e-61 3
TIGR_CMR|BA_0103 - symbol:BA_0103 "DNA-directed RNA polym... 209 6.4e-58 8
UNIPROTKB|H9L2Z2 - symbol:H9L2Z2 "DNA-directed RNA polyme... 416 1.2e-57 3
UNIPROTKB|P37871 - symbol:rpoC "DNA-directed RNA polymera... 209 2.0e-57 8
TIGR_CMR|CHY_2317 - symbol:CHY_2317 "DNA-directed RNA pol... 215 6.7e-54 8
UNIPROTKB|H9L2Z1 - symbol:H9L2Z1 "DNA-directed RNA polyme... 527 7.5e-54 2
UNIPROTKB|P0A674 - symbol:rpoC "DNA-directed RNA polymera... 208 4.4e-53 10
TAIR|locus:2015163 - symbol:NRPD1A "nuclear RNA polymeras... 344 3.2e-52 5
UNIPROTKB|Q9KV29 - symbol:rpoC "DNA-directed RNA polymera... 203 1.4e-50 9
TIGR_CMR|VC_0329 - symbol:VC_0329 "DNA-directed RNA polym... 203 1.4e-50 9
TIGR_CMR|SO_0225 - symbol:SO_0225 "DNA-directed RNA polym... 205 2.5e-49 10
TIGR_CMR|ECH_0951 - symbol:ECH_0951 "DNA-directed RNA pol... 173 8.9e-49 9
TIGR_CMR|SPO_3507 - symbol:SPO_3507 "DNA-directed RNA pol... 206 3.0e-48 9
TIGR_CMR|CPS_4768 - symbol:CPS_4768 "DNA-directed RNA pol... 199 3.3e-48 9
TIGR_CMR|NSE_0677 - symbol:NSE_0677 "DNA-directed RNA pol... 182 4.6e-48 9
UNIPROTKB|P0A8T7 - symbol:rpoC "RNA polymerase, beta' sub... 199 1.9e-47 8
TIGR_CMR|DET_0604 - symbol:DET_0604 "DNA-directed RNA pol... 180 2.4e-47 8
TIGR_CMR|APH_1023 - symbol:APH_1023 "DNA-directed RNA pol... 182 1.2e-45 9
RGD|1305574 - symbol:Polr3a "polymerase (RNA) III (DNA di... 474 2.9e-45 2
TIGR_CMR|CBU_0232 - symbol:CBU_0232 "DNA-directed RNA pol... 186 4.1e-44 7
TIGR_CMR|CJE_0529 - symbol:CJE_0529 "DNA-directed RNA pol... 210 2.1e-43 8
UNIPROTKB|H9L2Z3 - symbol:H9L2Z3 "DNA-directed RNA polyme... 410 2.2e-41 2
UNIPROTKB|H9L2Z0 - symbol:H9L2Z0 "DNA-directed RNA polyme... 410 2.2e-41 2
UNIPROTKB|E1C4T2 - symbol:POLR1A "Uncharacterized protein... 227 2.4e-40 4
TAIR|locus:2061151 - symbol:NRPD1B "nuclear RNA polymeras... 295 1.5e-39 5
UNIPROTKB|P0C504 - symbol:rpoC1 "DNA-directed RNA polymer... 171 1.9e-19 3
UNIPROTKB|P0C505 - symbol:rpoC1 "DNA-directed RNA polymer... 171 1.9e-19 3
UNIPROTKB|P0C506 - symbol:rpoC1 "DNA-directed RNA polymer... 171 1.9e-19 3
UNIPROTKB|Q6ENI3 - symbol:rpoC1 "DNA-directed RNA polymer... 171 1.9e-19 3
UNIPROTKB|P0C507 - symbol:rpoC2 "DNA-directed RNA polymer... 123 2.2e-14 4
UNIPROTKB|P0C508 - symbol:rpoC2 "DNA-directed RNA polymer... 123 2.2e-14 4
UNIPROTKB|P0C509 - symbol:rpoC2 "DNA-directed RNA polymer... 123 2.2e-14 4
UNIPROTKB|Q6ENI2 - symbol:rpoC2 "DNA-directed RNA polymer... 123 2.2e-14 4
UNIPROTKB|I3LQ53 - symbol:I3LQ53 "Uncharacterized protein... 203 2.2e-12 1
>DICTYBASE|DDB_G0279193 [details] [associations]
symbol:rpb1 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 dictyBase:DDB_G0279193
GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000030 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
OMA:KVLPWST EMBL:S52651 PIR:A56823 RefSeq:XP_641735.1 STRING:P35084
PRIDE:P35084 EnsemblProtists:DDB0215406 GeneID:8621932
KEGG:ddi:DDB_G0279193 KO:K03006 ProtClustDB:CLSZ2428993
Uniprot:P35084
Length = 1727
Score = 4220 (1490.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 827/1327 (62%), Positives = 1014/1327 (76%)
Query: 5 FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
FP S AE+ KV+ VQFGILSPDEIR MSV ++EH ET E GKPK GGL DP +GTID+
Sbjct: 5 FPPSSAELRKVKRVQFGILSPDEIRNMSVARVEHPETYENGKPKAGGLLDPAMGTIDKTQ 64
Query: 65 KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
+C+TC+ MAECPGHFGH+ELAKP+FHIGF+ TVL I+R VC++CSK+L D ++H F+QA
Sbjct: 65 RCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQA 124
Query: 125 LKIRNPKNRLKKILDACKNKTKCE-GGDEI---DVPGQDGE--EPLKKNKGGCGAQQPKL 178
LKIRN K+RL ++D CKNK C GG+E D+ D E +P+K GGCG PK+
Sbjct: 125 LKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVKH--GGCGNVLPKI 182
Query: 179 TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
T E +K+I E+K + E +E+K L+AERVL +LKRI DED + +G+NP +
Sbjct: 183 TKEDLKIIVEFK---------DVTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINPDW 233
Query: 239 ARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
AR DWMI VL DDLTH+LA I++ N L+RQE+NGAPAHI
Sbjct: 234 ARADWMIATVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAHI 293
Query: 289 ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
I+E Q LQFH+ATY DNE+PG P+A QRSGRP+KSI RLK KEGRIRGNLMGKRVDFS
Sbjct: 294 IAEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFS 353
Query: 349 ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
ARTVIT DP ++IDQ+GVP SIALNLTYPETVTP+NI++++EL+ GP PG AKYI
Sbjct: 354 ARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPG---AKYI 410
Query: 409 IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
IR+DG R DLR++KK SD HLE GYKVERH+NDGD V+FNRQPSLHKMS+MGHRIK+MPY
Sbjct: 411 IREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPY 470
Query: 469 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
STFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV+E+MMVP+ IVSPQSNRPVMGIVQ
Sbjct: 471 STFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQ 530
Query: 529 DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
DTLLG R TKRD F+EKD+ MNILMW +DGKVP P ILKP+ LWTGKQ+F+LIIP
Sbjct: 531 DTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP-D 589
Query: 589 INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
INL R + H D + +AGDT V IE+GELL+G LCK++LG + GS+IHV+ E G D
Sbjct: 590 INLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHD 649
Query: 649 AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
R F+ TQ +VN+WL+ F++GIGDTIAD+ TM + TIS AKN VK LI +AQ+K
Sbjct: 650 TCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNK 709
Query: 709 SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
E +PG++++E+FE KVNQVLN ARD AGSSAQ SLSE NNLKAMVTAGSKGSFINISQ
Sbjct: 710 QFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQ 769
Query: 769 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
M ACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG
Sbjct: 770 MMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 829
Query: 829 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
REGLIDTAVKTSETGYIQRRLVKAMED+ +KYD TVRNSLGDVIQF YGEDG+D ++E+
Sbjct: 830 REGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVEN 889
Query: 889 QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
Q++DSL+ +E ++ +R ++D+ ++ +M I+ ++ RD + E +++++DR
Sbjct: 890 QSIDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRNDSLTRDTLEKEFERIKSDR 949
Query: 949 YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
L EI SG+++WPLPVNL+RLI NAQK F +D RR SD++P VV ++KL RLK+
Sbjct: 950 SLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKI 1009
Query: 1009 VPGEDPLS---------VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
+ D E NAT+ F+IL+RSTFASKRVL E RLT +AF WV GEIE
Sbjct: 1010 IATADTTEDDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIE 1069
Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
S+FLQ+L PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN+AK+
Sbjct: 1070 SKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQ 1129
Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
+KTPSL+++LKP + +RAK V+ LEYTTL +VT ATE++YDPDP TII ED EFV
Sbjct: 1130 VKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFV 1189
Query: 1180 KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
SY+E+PDE+I +SPWLLRIEL+R M+ DKKL+MA + + + ++F L CIF+DDN
Sbjct: 1190 NSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSDDN 1249
Query: 1240 ADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVN-LLAVMCHEDVD 1298
A+KLILRIR++ + KG ND+ DD FL++IESNML+EM LRG+ + V D
Sbjct: 1250 AEKLILRIRMVESQETKGTDNDD---DDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDK 1306
Query: 1299 ARRTTSN 1305
+ T N
Sbjct: 1307 IPKVTEN 1313
Score = 587 (211.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 123/203 (60%), Positives = 150/203 (73%)
Query: 1285 GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1344
GV+LL VM H DVD RTTSN ++EII+VLGIEAVR ALL ELR VISFDGSYVNYRHLA
Sbjct: 1328 GVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLA 1387
Query: 1345 ILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIM 1404
IL D MTYRGHLMAITRHGINR +TGP+MRCSFEETV+IL+DAA+F+E+D ++GVTENI+
Sbjct: 1388 ILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEILMDAAMFSETDDVKGVTENII 1447
Query: 1405 LGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPG 1464
LGQL P+GTG ++LN +M+KNA + LP + + TP S Y DG +P
Sbjct: 1448 LGQLPPLGTGSFEVFLNQDMIKNAHSIALPE-PSNVSYPDTPG-SQTPSYSYGDGSTTPF 1505
Query: 1465 YLFSP-NLRLSPVTDA---QFSP 1483
+ +P + LSP + FSP
Sbjct: 1506 H--NPYDAPLSPFNETFRGDFSP 1526
>UNIPROTKB|G3MZY8 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:DAAA02048777
EMBL:DAAA02048778 EMBL:DAAA02048779 EMBL:DAAA02048780
EMBL:DAAA02048781 Ensembl:ENSBTAT00000064788 Uniprot:G3MZY8
Length = 1970
Score = 3907 (1380.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 766/1329 (57%), Positives = 982/1329 (73%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S + ++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +
Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
C+TC NM ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130
Query: 126 -KIRN-PKNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPK 177
K + PK RL + D CK K CEGG+E+D V +G+E L K KG GCG QP+
Sbjct: 131 AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190
Query: 178 LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
+ G+++ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+
Sbjct: 191 IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 241
Query: 238 YARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
YARP+WMI+ VL DDLTH+LA I++ N LRR E+NGA AH
Sbjct: 242 YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 288 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+I+E +LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
SARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKY
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKY 418
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
IIRD+G R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 419 IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 479 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 538
Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
QDTL RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP
Sbjct: 539 QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 598
Query: 588 QINLFRTAAWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
IN RT + H D+ D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ +
Sbjct: 599 HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 658
Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
E+G D R F + Q ++N WLL +IGIGD+IAD+KT + I +TI KAK +V +I+
Sbjct: 659 EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 718
Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
+A + LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS
Sbjct: 719 KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 778
Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
INISQ+ A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 779 INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 838
Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+
Sbjct: 839 HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 898
Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
+E Q L +LK F+K FRF+ E + ++ + D+ + +++ + E ++
Sbjct: 899 ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 958
Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
+ DR L I +GDS LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L
Sbjct: 959 MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1017
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
++L +V G+DPLS +AQ+NATL FNI LRST S+R+ +E RL+ EAF+W++GEIES+F
Sbjct: 1018 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1077
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
Q++ PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTP
Sbjct: 1078 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1137
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
SL+VFL ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YY
Sbjct: 1138 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1197
Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
EMPD D+A +ISPWLLR+EL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL
Sbjct: 1198 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1255
Query: 1244 ILRIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGVNLLA-VMCH--EDV 1297
+LRIRIMN + K + +E +DDVFL+ IESNMLT+M L+G+ ++ V CH +
Sbjct: 1256 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVTCHLPQTD 1315
Query: 1298 DARRTTSNH 1306
+ ++ T H
Sbjct: 1316 NKKKITMTH 1324
Score = 539 (194.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 134/283 (47%), Positives = 178/283 (62%)
Query: 1221 EKINQEFDDD--LTCIFNDDNADKLILRIRIMND---EAPKGELNDE-SAEDDVFLKKIE 1274
E++ + DDD L CI ++ D + I ++ P+ + + + D KK
Sbjct: 1273 EEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVTCHLPQTDNKKKITMTHDASFKKYF 1332
Query: 1275 SNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1334
L ++ GV+L+ V+ +DVD RTTSN ++EI VLGIEAVR+AL EL VISFD
Sbjct: 1333 --YLFQLETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFD 1390
Query: 1335 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1394
GSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++AA ESD
Sbjct: 1391 GSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESD 1450
Query: 1395 YLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSY----MEGLEFGMTPAR 1448
++GV+ENIMLGQLAP GTG L L+ E K +E+ +P G+ FG P
Sbjct: 1451 PMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAP-- 1508
Query: 1449 SPVSG-----TPYHDGMMSPGY-LFSPNLRLSPVTD--AQFSP 1483
SP+ G TP++ G +P Y +SP++ S +T A FSP
Sbjct: 1509 SPMGGISPAMTPWNQGA-TPAYGAWSPSVG-SGMTPGAAGFSP 1549
Score = 64 (27.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSP 1475
G G +PA SP G+P G SP Y+ SP +SP
Sbjct: 1557 GFSPGYSPAWSPTPGSPGSPGPSSP-YIPSPGGAMSP 1592
>UNIPROTKB|F1PGS0 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:AAEX03003616
EMBL:AAEX03003617 Ensembl:ENSCAFT00000026237 Uniprot:F1PGS0
Length = 1969
Score = 3896 (1376.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 763/1315 (58%), Positives = 975/1315 (74%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S + ++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +
Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
C+TC NM ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130
Query: 126 -KIRN-PKNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPK 177
K + PK RL + D CK K CEGG+E+D V +G+E L K KG GCG QP+
Sbjct: 131 AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190
Query: 178 LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
+ G+++ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+
Sbjct: 191 IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 241
Query: 238 YARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
YARP+WMI+ VL DDLTH+LA I++ N LRR E+NGA AH
Sbjct: 242 YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 288 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+I+E +LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
SARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKY
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKY 418
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
IIRD+G R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 419 IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 479 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 538
Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
QDTL RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP
Sbjct: 539 QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 598
Query: 588 QINLFRTAAWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
IN RT + H D+ D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ +
Sbjct: 599 HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 658
Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
E+G D R F + Q ++N WLL +IGIGD+IAD+KT + I +TI KAK +V +I+
Sbjct: 659 EMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 718
Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
+A + LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS
Sbjct: 719 KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 778
Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
INISQ+ A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 779 INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 838
Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+
Sbjct: 839 HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 898
Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
+E Q L +LK F+K FRF+ E + ++ + D+ + +++ + E ++
Sbjct: 899 ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 958
Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
+ DR L I +GDS LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L
Sbjct: 959 MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1017
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
++L +V G+DPLS +AQ+NATL FNI LRST S+R+ +E RL+ EAF+W++GEIES+F
Sbjct: 1018 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1077
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
Q++ PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTP
Sbjct: 1078 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1137
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
SL+VFL ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YY
Sbjct: 1138 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1197
Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
EMPD D+A +ISPWLLR+EL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL
Sbjct: 1198 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1255
Query: 1244 ILRIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGVNLLA-VMCH 1294
+LRIRIMN + K + +E +DDVFL+ IESNMLT+M L+G+ ++ V H
Sbjct: 1256 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMH 1310
Score = 538 (194.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 134/281 (47%), Positives = 175/281 (62%)
Query: 1221 EKINQEFDDD--LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNML 1278
E++ + DDD L CI ++ D + I ++ D + + + E L
Sbjct: 1273 EEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI-IITEDGEFKAL 1331
Query: 1279 TEMALR--GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336
E L GV+L+ V+ +DVD RTTSN ++EI VLGIEAVR+AL EL VISFDGS
Sbjct: 1332 QEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGS 1391
Query: 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYL 1396
YVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++AA ESD +
Sbjct: 1392 YVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPM 1451
Query: 1397 RGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSY----MEGLEFGMTPARSP 1450
+GV+ENIMLGQLAP GTG L L+ E K +E+ +P G+ FG P SP
Sbjct: 1452 KGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAP--SP 1509
Query: 1451 VSG-----TPYHDGMMSPGY-LFSPNLRLSPVTD--AQFSP 1483
+ G TP++ G +P Y +SP++ S +T A FSP
Sbjct: 1510 MGGISPAMTPWNQGA-TPAYGAWSPSVG-SGMTPGAAGFSP 1548
Score = 64 (27.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSP 1475
G G +PA SP G+P G SP Y+ SP +SP
Sbjct: 1556 GFSPGYSPAWSPTPGSPGSPGPSSP-YIPSPGGAMSP 1591
Score = 56 (24.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 1445 TPARSPVSGTPYHDGMMSPGYL-FSPNLRLSPV---TDAQFSP 1483
+P+ SP S P + M SP Y SPNL+LSP T +SP
Sbjct: 1766 SPSYSPTS--PNYTPM-SPNYSPTSPNLQLSPSYSPTSPSYSP 1805
>UNIPROTKB|J9NW09 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 EMBL:AAEX03003616 EMBL:AAEX03003617
Ensembl:ENSCAFT00000050029 Uniprot:J9NW09
Length = 1789
Score = 3896 (1376.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 763/1315 (58%), Positives = 975/1315 (74%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S + ++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +
Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
C+TC NM ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130
Query: 126 -KIRN-PKNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPK 177
K + PK RL + D CK K CEGG+E+D V +G+E L K KG GCG QP+
Sbjct: 131 AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190
Query: 178 LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
+ G+++ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+
Sbjct: 191 IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 241
Query: 238 YARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
YARP+WMI+ VL DDLTH+LA I++ N LRR E+NGA AH
Sbjct: 242 YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 288 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+I+E +LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
SARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKY
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKY 418
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
IIRD+G R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 419 IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 479 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 538
Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
QDTL RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP
Sbjct: 539 QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 598
Query: 588 QINLFRTAAWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
IN RT + H D+ D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ +
Sbjct: 599 HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 658
Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
E+G D R F + Q ++N WLL +IGIGD+IAD+KT + I +TI KAK +V +I+
Sbjct: 659 EMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 718
Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
+A + LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS
Sbjct: 719 KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 778
Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
INISQ+ A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 779 INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 838
Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+
Sbjct: 839 HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 898
Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
+E Q L +LK F+K FRF+ E + ++ + D+ + +++ + E ++
Sbjct: 899 ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 958
Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
+ DR L I +GDS LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L
Sbjct: 959 MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1017
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
++L +V G+DPLS +AQ+NATL FNI LRST S+R+ +E RL+ EAF+W++GEIES+F
Sbjct: 1018 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1077
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
Q++ PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTP
Sbjct: 1078 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1137
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
SL+VFL ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YY
Sbjct: 1138 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1197
Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
EMPD D+A +ISPWLLR+EL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL
Sbjct: 1198 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1255
Query: 1244 ILRIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGVNLLA-VMCH 1294
+LRIRIMN + K + +E +DDVFL+ IESNMLT+M L+G+ ++ V H
Sbjct: 1256 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMH 1310
Score = 538 (194.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 134/281 (47%), Positives = 175/281 (62%)
Query: 1221 EKINQEFDDD--LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNML 1278
E++ + DDD L CI ++ D + I ++ D + + + E L
Sbjct: 1273 EEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI-IITEDGEFKAL 1331
Query: 1279 TEMALR--GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336
E L GV+L+ V+ +DVD RTTSN ++EI VLGIEAVR+AL EL VISFDGS
Sbjct: 1332 QEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGS 1391
Query: 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYL 1396
YVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++AA ESD +
Sbjct: 1392 YVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPM 1451
Query: 1397 RGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSY----MEGLEFGMTPARSP 1450
+GV+ENIMLGQLAP GTG L L+ E K +E+ +P G+ FG P SP
Sbjct: 1452 KGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAP--SP 1509
Query: 1451 VSG-----TPYHDGMMSPGY-LFSPNLRLSPVTD--AQFSP 1483
+ G TP++ G +P Y +SP++ S +T A FSP
Sbjct: 1510 MGGISPAMTPWNQGA-TPAYGAWSPSVG-SGMTPGAAGFSP 1548
Score = 64 (27.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSP 1475
G G +PA SP G+P G SP Y+ SP +SP
Sbjct: 1556 GFSPGYSPAWSPTPGSPGSPGPSSP-YIPSPGGAMSP 1591
>RGD|1587326 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 RGD:1587326 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 KO:K03006 CTD:5430 OrthoDB:EOG4JWVCM
IPI:IPI00952328 RefSeq:XP_001079162.1 RefSeq:XP_343923.3
UniGene:Rn.163136 Ensembl:ENSRNOT00000068013 GeneID:363633
KEGG:rno:363633 UCSC:RGD:1587326 NextBio:683839 ArrayExpress:D4A5A6
Uniprot:D4A5A6
Length = 1970
Score = 3896 (1376.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 763/1315 (58%), Positives = 975/1315 (74%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S + ++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +
Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
C+TC NM ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130
Query: 126 -KIRN-PKNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPK 177
K + PK RL + D CK K CEGG+E+D V +G+E L K KG GCG QP+
Sbjct: 131 AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190
Query: 178 LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
+ G+++ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+
Sbjct: 191 IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 241
Query: 238 YARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
YARP+WMI+ VL DDLTH+LA I++ N LRR E+NGA AH
Sbjct: 242 YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 288 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+I+E +LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
SARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKY
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKY 418
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
IIRD+G R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 419 IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 479 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 538
Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
QDTL RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP
Sbjct: 539 QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 598
Query: 588 QINLFRTAAWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
IN RT + H D+ D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ +
Sbjct: 599 HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 658
Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
E+G D R F + Q ++N WLL +IGIGD+IAD+KT + I +TI KAK +V +I+
Sbjct: 659 EMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 718
Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
+A + LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS
Sbjct: 719 KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 778
Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
INISQ+ A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 779 INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 838
Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+
Sbjct: 839 HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 898
Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
+E Q L +LK F+K FRF+ E + ++ + D+ + +++ + E ++
Sbjct: 899 ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 958
Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
+ DR L I +GDS LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L
Sbjct: 959 MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1017
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
++L +V G+DPLS +AQ+NATL FNI LRST S+R+ +E RL+ EAF+W++GEIES+F
Sbjct: 1018 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1077
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
Q++ PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTP
Sbjct: 1078 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1137
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
SL+VFL ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YY
Sbjct: 1138 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1197
Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
EMPD D+A +ISPWLLR+EL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL
Sbjct: 1198 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1255
Query: 1244 ILRIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGVNLLA-VMCH 1294
+LRIRIMN + K + +E +DDVFL+ IESNMLT+M L+G+ ++ V H
Sbjct: 1256 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMH 1310
Score = 538 (194.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 134/281 (47%), Positives = 175/281 (62%)
Query: 1221 EKINQEFDDD--LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNML 1278
E++ + DDD L CI ++ D + I ++ D + + + E L
Sbjct: 1273 EEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI-IITEDGEFKAL 1331
Query: 1279 TEMALR--GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336
E L GV+L+ V+ +DVD RTTSN ++EI VLGIEAVR+AL EL VISFDGS
Sbjct: 1332 QEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGS 1391
Query: 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYL 1396
YVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++AA ESD +
Sbjct: 1392 YVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPM 1451
Query: 1397 RGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSY----MEGLEFGMTPARSP 1450
+GV+ENIMLGQLAP GTG L L+ E K +E+ +P G+ FG P SP
Sbjct: 1452 KGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAP--SP 1509
Query: 1451 VSG-----TPYHDGMMSPGY-LFSPNLRLSPVTD--AQFSP 1483
+ G TP++ G +P Y +SP++ S +T A FSP
Sbjct: 1510 MGGISPAMTPWNQGA-TPAYGAWSPSVG-SGMTPGAAGFSP 1548
Score = 64 (27.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSP 1475
G G +PA SP G+P G SP Y+ SP +SP
Sbjct: 1556 GFSPGYSPAWSPTPGSPGSPGPSSP-YIPSPGGAMSP 1591
>UNIPROTKB|P24928 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0006366
"transcription from RNA polymerase II promoter"
evidence=IDA;NAS;TAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 Reactome:REACT_116125
EMBL:CH471108 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006367 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 EMBL:AC113189 GO:GO:0003899 PDB:2GHQ PDB:2GHT
PDBsum:2GHQ PDBsum:2GHT eggNOG:COG0086 GO:GO:0003968 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X63564 EMBL:X74874
EMBL:X74873 EMBL:X74872 EMBL:X74871 EMBL:X74870 EMBL:BC137231
IPI:IPI00031627 PIR:I38186 PIR:S21054 RefSeq:NP_000928.1
UniGene:Hs.270017 PDB:2LTO PDBsum:2LTO ProteinModelPortal:P24928
SMR:P24928 DIP:DIP-29011N IntAct:P24928 MINT:MINT-156582
STRING:P24928 PhosphoSite:P24928 DMDM:281185484 PaxDb:P24928
PRIDE:P24928 Ensembl:ENST00000322644 GeneID:5430 KEGG:hsa:5430
UCSC:uc002ghf.4 CTD:5430 GeneCards:GC17P007387 H-InvDB:HIX0173727
HGNC:HGNC:9187 HPA:CAB012226 HPA:CAB016388 HPA:CAB022311
HPA:HPA021563 MIM:180660 neXtProt:NX_P24928 PharmGKB:PA33507
HOVERGEN:HBG004339 InParanoid:P24928 OrthoDB:EOG4JWVCM
BindingDB:P24928 ChEMBL:CHEMBL1641353 ChiTaRS:POLR2A
EvolutionaryTrace:P24928 GenomeRNAi:5430 NextBio:21009
ArrayExpress:P24928 Bgee:P24928 CleanEx:HS_POLR2A
Genevestigator:P24928 GermOnline:ENSG00000181222 Uniprot:P24928
Length = 1970
Score = 3895 (1376.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 763/1315 (58%), Positives = 975/1315 (74%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S + ++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +
Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
C+TC NM ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130
Query: 126 -KIRN-PKNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPK 177
K + PK RL + D CK K CEGG+E+D V +G+E L K KG GCG QP+
Sbjct: 131 AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190
Query: 178 LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
+ G+++ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+
Sbjct: 191 IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 241
Query: 238 YARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
YARP+WMI+ VL DDLTH+LA I++ N LRR E+NGA AH
Sbjct: 242 YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 288 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+I+E +LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
SARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKY
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKY 418
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
IIRD+G R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 419 IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 479 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 538
Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
QDTL RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP
Sbjct: 539 QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 598
Query: 588 QINLFRTAAWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
IN RT + H D+ D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ +
Sbjct: 599 HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 658
Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
E+G D R F + Q ++N WLL +IGIGD+IAD+KT + I +TI KAK +V +I+
Sbjct: 659 EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 718
Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
+A + LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS
Sbjct: 719 KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 778
Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
INISQ+ A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 779 INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 838
Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+
Sbjct: 839 HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 898
Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
+E Q L +LK F+K FRF+ E + ++ + D+ + +++ + E ++
Sbjct: 899 ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 958
Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
+ DR L I +GDS LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L
Sbjct: 959 MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1017
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
++L +V G+DPLS +AQ+NATL FNI LRST S+R+ +E RL+ EAF+W++GEIES+F
Sbjct: 1018 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1077
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
Q++ PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTP
Sbjct: 1078 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1137
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
SL+VFL ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YY
Sbjct: 1138 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1197
Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
EMPD D+A +ISPWLLR+EL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL
Sbjct: 1198 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1255
Query: 1244 ILRIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGVNLLA-VMCH 1294
+LRIRIMN + K + +E +DDVFL+ IESNMLT+M L+G+ ++ V H
Sbjct: 1256 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMH 1310
Score = 538 (194.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 134/281 (47%), Positives = 175/281 (62%)
Query: 1221 EKINQEFDDD--LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNML 1278
E++ + DDD L CI ++ D + I ++ D + + + E L
Sbjct: 1273 EEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI-IITEDGEFKAL 1331
Query: 1279 TEMALR--GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336
E L GV+L+ V+ +DVD RTTSN ++EI VLGIEAVR+AL EL VISFDGS
Sbjct: 1332 QEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGS 1391
Query: 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYL 1396
YVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++AA ESD +
Sbjct: 1392 YVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPM 1451
Query: 1397 RGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSY----MEGLEFGMTPARSP 1450
+GV+ENIMLGQLAP GTG L L+ E K +E+ +P G+ FG P SP
Sbjct: 1452 KGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAP--SP 1509
Query: 1451 VSG-----TPYHDGMMSPGY-LFSPNLRLSPVTD--AQFSP 1483
+ G TP++ G +P Y +SP++ S +T A FSP
Sbjct: 1510 MGGISPAMTPWNQGA-TPAYGAWSPSVG-SGMTPGAAGFSP 1548
Score = 64 (27.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSP 1475
G G +PA SP G+P G SP Y+ SP +SP
Sbjct: 1556 GFSPGYSPAWSPTPGSPGSPGPSSP-YIPSPGGAMSP 1591
>MGI|MGI:98086 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide
A" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 MGI:MGI:98086
GO:GO:0046872 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
EMBL:AL603707 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 CTD:5430
HOVERGEN:HBG004339 OrthoDB:EOG4JWVCM ChiTaRS:POLR2A EMBL:M12130
EMBL:M14101 IPI:IPI00136207 PIR:A28490 RefSeq:NP_033115.1
UniGene:Mm.16533 DisProt:DP00181 ProteinModelPortal:P08775
SMR:P08775 DIP:DIP-46369N IntAct:P08775 STRING:P08775
PhosphoSite:P08775 PaxDb:P08775 PRIDE:P08775
Ensembl:ENSMUST00000058470 Ensembl:ENSMUST00000071213 GeneID:20020
KEGG:mmu:20020 UCSC:uc007jrj.1 InParanoid:Q5F298 NextBio:297535
Bgee:P08775 CleanEx:MM_POLR2A Genevestigator:P08775
GermOnline:ENSMUSG00000005198 Uniprot:P08775
Length = 1970
Score = 3895 (1376.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 763/1315 (58%), Positives = 975/1315 (74%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S + ++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +
Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
C+TC NM ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130
Query: 126 -KIRN-PKNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPK 177
K + PK RL + D CK K CEGG+E+D V +G+E L K KG GCG QP+
Sbjct: 131 AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190
Query: 178 LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
+ G+++ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+
Sbjct: 191 IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 241
Query: 238 YARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
YARP+WMI+ VL DDLTH+LA I++ N LRR E+NGA AH
Sbjct: 242 YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 288 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+I+E +LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
SARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKY
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKY 418
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
IIRD+G R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 419 IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 479 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 538
Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
QDTL RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP
Sbjct: 539 QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 598
Query: 588 QINLFRTAAWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
IN RT + H D+ D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ +
Sbjct: 599 HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 658
Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
E+G D R F + Q ++N WLL +IGIGD+IAD+KT + I +TI KAK +V +I+
Sbjct: 659 EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 718
Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
+A + LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS
Sbjct: 719 KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 778
Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
INISQ+ A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 779 INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 838
Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+
Sbjct: 839 HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 898
Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
+E Q L +LK F+K FRF+ E + ++ + D+ + +++ + E ++
Sbjct: 899 ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 958
Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
+ DR L I +GDS LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L
Sbjct: 959 MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1017
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
++L +V G+DPLS +AQ+NATL FNI LRST S+R+ +E RL+ EAF+W++GEIES+F
Sbjct: 1018 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1077
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
Q++ PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTP
Sbjct: 1078 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1137
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
SL+VFL ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YY
Sbjct: 1138 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1197
Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
EMPD D+A +ISPWLLR+EL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL
Sbjct: 1198 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1255
Query: 1244 ILRIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGVNLLA-VMCH 1294
+LRIRIMN + K + +E +DDVFL+ IESNMLT+M L+G+ ++ V H
Sbjct: 1256 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMH 1310
Score = 538 (194.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 134/281 (47%), Positives = 175/281 (62%)
Query: 1221 EKINQEFDDD--LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNML 1278
E++ + DDD L CI ++ D + I ++ D + + + E L
Sbjct: 1273 EEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI-IITEDGEFKAL 1331
Query: 1279 TEMALR--GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336
E L GV+L+ V+ +DVD RTTSN ++EI VLGIEAVR+AL EL VISFDGS
Sbjct: 1332 QEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGS 1391
Query: 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYL 1396
YVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++AA ESD +
Sbjct: 1392 YVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPM 1451
Query: 1397 RGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSY----MEGLEFGMTPARSP 1450
+GV+ENIMLGQLAP GTG L L+ E K +E+ +P G+ FG P SP
Sbjct: 1452 KGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAP--SP 1509
Query: 1451 VSG-----TPYHDGMMSPGY-LFSPNLRLSPVTD--AQFSP 1483
+ G TP++ G +P Y +SP++ S +T A FSP
Sbjct: 1510 MGGISPAMTPWNQGA-TPAYGAWSPSVG-SGMTPGAAGFSP 1548
Score = 64 (27.6 bits), Expect = 0., Sum P(2) = 0.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSP 1475
G G +PA SP G+P G SP Y+ SP +SP
Sbjct: 1556 GFSPGYSPAWSPTPGSPGSPGPSSP-YIPSPGGAMSP 1591
>ZFIN|ZDB-GENE-041008-78 [details] [associations]
symbol:polr2a "polymerase (RNA) II (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 ZFIN:ZDB-GENE-041008-78 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0005665 GeneTree:ENSGT00700000104490 EMBL:AL929346
IPI:IPI00608319 Ensembl:ENSDART00000077495 Bgee:F1Q9K4
Uniprot:F1Q9K4
Length = 1965
Score = 3859 (1363.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 755/1307 (57%), Positives = 968/1307 (74%)
Query: 15 VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +C+TC N
Sbjct: 16 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGN 75
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL-KIRN-P 130
M ECPGHFGH+ELAKP+FH+GF+ ++ ++R VCF CSK+L D ++ K K L K + P
Sbjct: 76 MTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANNPKIKDILTKSKGQP 135
Query: 131 KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLK-KNKGGCGAQQPKLTIEGMKM 185
+ RL + D CK K CEGG+E+D V + E+ K K GGCG QP++ G+++
Sbjct: 136 RKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPESEDITKEKGHGGCGRYQPRIRRSGLEL 195
Query: 186 IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
AE+K N+D + E+K L+ ERV + KRI+DE+ +LG++PKYARP+WMI
Sbjct: 196 YAEWK---HVNEDSQ------EKKILLSPERVHEIFKRIADEEDIILGMDPKYARPEWMI 246
Query: 246 LQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
+ VL DDLTH+LA I++ N L+R E++GA AH+I+E +L
Sbjct: 247 VTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHVIAEDVKL 306
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQFH+AT DNELPG PRA Q+SGRP+KSI RLK KEGR+RGNLMGKRVDFSARTVITP
Sbjct: 307 LQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITP 366
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
DP + IDQ+GVP SIA N+T+PE VTP+NI+RL+ELV G PG AKYIIRD+G R
Sbjct: 367 DPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGDR 423
Query: 416 LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
+DLR+ K SD HL++GYKVERH+ DGD ++FNRQP+LHKMS+MGHR++I+P+STFRLNL
Sbjct: 424 IDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTFRLNL 483
Query: 476 SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
SVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL R
Sbjct: 484 SVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVR 543
Query: 536 KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
K TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP IN RT
Sbjct: 544 KFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINAIRTH 603
Query: 596 AWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 651
+ H D D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D R
Sbjct: 604 STHPDEEDSGPYKNISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITR 663
Query: 652 KFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711
F + Q +VN WLL SIGIGD+IAD T + I +TI KAK +V +I++A + LE
Sbjct: 664 LFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHNNELE 723
Query: 712 PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 771
P PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV AGSKGS INISQ+ A
Sbjct: 724 PTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIA 783
Query: 772 CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 831
VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREG
Sbjct: 784 VVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREG 843
Query: 832 LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL 891
LIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+ +E Q +
Sbjct: 844 LIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNM 903
Query: 892 DSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL 951
+LK F+K F+F+ E + ++ + D+ T ++ + E +K+ DR ++
Sbjct: 904 ATLKPSHKAFEKKFKFDYANERALRRTLQEDVVKDVMTNAHVQSSLEREFEKMREDR-EI 962
Query: 952 ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG 1011
I +GDS LP NL R+IWNAQK F+++PR P+D++P VV+ V +L ++L +V G
Sbjct: 963 LRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRAPTDLNPARVVDGVKELSKKLVIVNG 1022
Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
+D LS +AQ+NATL FNI LRST SKR+ +E RL+ EAF+W++GEIE++F QS+ PGE
Sbjct: 1023 DDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGE 1082
Query: 1072 MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKP 1131
M+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTPSL+VFL
Sbjct: 1083 MVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLG 1142
Query: 1132 GVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIA 1191
ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YYEMPD D+
Sbjct: 1143 QAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDFDVT 1202
Query: 1192 PEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMN 1251
+ISPWLLRIEL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL+LRIRIMN
Sbjct: 1203 --RISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN 1260
Query: 1252 DEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGVNLLA-VMCH 1294
+ K + ++E +DDVFL+ IESNMLT+M L+G+ ++ V H
Sbjct: 1261 SDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMH 1307
Score = 538 (194.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 135/281 (48%), Positives = 176/281 (62%)
Query: 1221 EKINQEFDDD--LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNML 1278
E++ + DDD L CI ++ D + I ++ D + + + E L
Sbjct: 1270 EEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKI-IITEDGEFKAL 1328
Query: 1279 TEMALR--GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336
E L GV+L+ V+ +DVD RTTSN ++EI VLGIEAVR+AL EL VISFDGS
Sbjct: 1329 QEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGS 1388
Query: 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYL 1396
YVNYRHLA+LCDTMT RGHLMAITRHGINR DTGP+M+CSFEETVD+L++A+ ESD +
Sbjct: 1389 YVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSHGESDPM 1448
Query: 1397 RGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYM----EGLEFGMTPARSP 1450
+GV+ENIMLGQLAP GTG L L+ E K +E+ +P G+ FG P SP
Sbjct: 1449 KGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMFFGSAP--SP 1506
Query: 1451 VSG-----TPYHDGMMSPGY-LFSPNLRLSPVTD--AQFSP 1483
+SG TP++ G +P Y +SP++ S +T A FSP
Sbjct: 1507 MSGMSPAMTPWNTGA-TPAYGAWSPSVG-SGMTPGAAGFSP 1545
Score = 61 (26.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSP 1475
G G +PA SP G+P G SP Y+ SP LSP
Sbjct: 1553 GFSPGYSPAWSPTPGSPGSPGPASP-YIPSPGA-LSP 1587
>FB|FBgn0003277 [details] [associations]
symbol:RpII215 "RNA polymerase II 215kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS;NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0005700
"polytene chromosome" evidence=IDA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
PROSITE:PS00115 SMART:SM00663 GO:GO:0007095 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0005703 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 GeneTree:ENSGT00700000104490 OMA:KVLPWST KO:K03006
EMBL:M27431 EMBL:M14203 EMBL:M11798 EMBL:M19537 PIR:S04457
RefSeq:NP_511124.1 UniGene:Dm.2925 ProteinModelPortal:P04052
SMR:P04052 DIP:DIP-22282N IntAct:P04052 MINT:MINT-970158
STRING:P04052 PaxDb:P04052 EnsemblMetazoa:FBtr0073542 GeneID:32100
KEGG:dme:Dmel_CG1554 CTD:32100 FlyBase:FBgn0003277
InParanoid:P04052 OrthoDB:EOG4QRFJV PhylomeDB:P04052
GenomeRNAi:32100 NextBio:776837 Bgee:P04052 GermOnline:CG1554
Uniprot:P04052
Length = 1887
Score = 3850 (1360.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 759/1342 (56%), Positives = 975/1342 (72%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S A + +V+ VQFGILSPDEIR+MSV + ++ ET E G+PK GGL DPR G IDR +
Sbjct: 7 SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
C+TC NM ECPGHFGH++LAKP+FHIGF+ + I+R VCF CSK+L + K K+
Sbjct: 67 CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126
Query: 125 LKIRN-PKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIE 181
+K R P+ RL + D CK KT CEGG+++D+ ++ + +P KK GGCG QP +
Sbjct: 127 MKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRT 186
Query: 182 GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
G+ + AE+K Q N+D + E+K ++AERV +LK I+DE+C +LG++PKYARP
Sbjct: 187 GLDLTAEWKHQ---NEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYARP 237
Query: 242 DWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
DWMI+ VL DDLTH+L+ II+ N LR+ E +GA AH+I E
Sbjct: 238 DWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQE 297
Query: 292 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
++LQFH+AT DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 298 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
Query: 352 VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
VITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV G PG AKYI+RD
Sbjct: 358 VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRD 414
Query: 412 DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
+G+R+DLR+ KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 415 NGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474
Query: 472 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 475 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTL 534
Query: 532 LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
RK+TKRD FI ++ MN+LM+ +D K+PQP ILKPRPLWTGKQ+F+LIIP +N+
Sbjct: 535 TAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNM 594
Query: 592 FRTAAWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
RT + H D D+G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G
Sbjct: 595 IRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGH 654
Query: 648 DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
D A +F G+ Q ++N WLL SIGIGDTIAD +T I I KAK++V N+I++A +
Sbjct: 655 DIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHN 714
Query: 708 KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 715 MELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 774
Query: 768 QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
Q+ ACVGQQNVEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 775 QVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834
Query: 828 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ YGEDG+ +E
Sbjct: 835 GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVE 894
Query: 888 SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
Q + ++K+ F+K F+F+ E + I ++ E +AE +L +D
Sbjct: 895 FQNMPTVKLSNKSFEKRFKFDWSNERLMKKVFTDDVIKEMTDSSEAIQELEAEWDRLVSD 954
Query: 948 RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1007
R L +I +G+S LP NL+R+IWN QK F ++ R P+D+ P+ V++ V L ER
Sbjct: 955 RDSLR-QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCV 1013
Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
+V G D +S +A +NATL F L+RST +K V +E RL+ EAFEW++GEIE+RF Q+
Sbjct: 1014 IVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQA 1073
Query: 1068 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1127
PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+V
Sbjct: 1074 NPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 1133
Query: 1128 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1187
FL G E+AKNV C LE+TTLR VT T ++YDPDP T+I ED EFV YYEMPD
Sbjct: 1134 FLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPD 1193
Query: 1188 EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1247
D P +ISPWLLRIEL+R+ M DKKL+M +AEKIN F +DL CIFNDDNADKL+LRI
Sbjct: 1194 FD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRI 1251
Query: 1248 RIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGVNLLA-VMCHEDVDARRTT 1303
RIMN+E K + DE+ EDD+FL+ IE+NML++M L+G+ + V H +T
Sbjct: 1252 RIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMH----LPQTD 1307
Query: 1304 SNHLIEIIEVLGIEAVRRALLD 1325
S I I E +A+ LL+
Sbjct: 1308 SKKRIVITETGEFKAIGEWLLE 1329
Score = 470 (170.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 105/208 (50%), Positives = 140/208 (67%)
Query: 1285 GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1344
G +++ V+ DVD RT+SN + EI +VLGIEAVR+++ E+ V+ F G YVNYRHLA
Sbjct: 1332 GTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLA 1391
Query: 1345 ILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIM 1404
+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA AE+D +RGV+ENI+
Sbjct: 1392 LLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENII 1451
Query: 1405 LGQLAPIGTGDCSLYLNDEMLKNAIELQ--LPSYMEG-----LEFGMTPARSPVSGTPYH 1457
+GQL +GTG L L+ E + IE+ L + M G + G TP+ +P TP+
Sbjct: 1452 MGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGNSMLGGAAMFIGGGSTPSMTPPM-TPWA 1510
Query: 1458 DGMMSPGYLFSPNLRLSPVTDA--QFSP 1483
+ +P Y FSP +S +T FSP
Sbjct: 1511 N-CNTPRY-FSPPGHVSAMTPGGPSFSP 1536
Score = 51 (23.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 16/43 (37%), Positives = 19/43 (44%)
Query: 1443 GMTPARSPVSGTPYHDGMM--SPGYLFSPNLRLSPVTDAQFSP 1483
GM+P+ SP H G SPG SP SP +SP
Sbjct: 1544 GMSPSWSPA-----HPGSSPSSPGPSMSPYFPASPSVSPSYSP 1581
Score = 39 (18.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 1449 SPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSP 1483
SP +G+ Y SP Y SPN+ + + ++SP
Sbjct: 1812 SP-TGSTY--SATSPRY--SPNMSIYSPSSTKYSP 1841
>POMBASE|SPBC28F2.12 [details] [associations]
symbol:rpb1 "RNA polymerase II large subunit Rpb1"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IC] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IC] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 PomBase:SPBC28F2.12 GO:GO:0005829
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 PDB:3H0G PDBsum:3H0G
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X56564 PIR:S26849
RefSeq:NP_595673.1 ProteinModelPortal:P36594 IntAct:P36594
MINT:MINT-1214221 STRING:P36594 EnsemblFungi:SPBC28F2.12.1
GeneID:2540292 KEGG:spo:SPBC28F2.12 OrthoDB:EOG4J14H5
EvolutionaryTrace:P36594 NextBio:20801422 Uniprot:P36594
Length = 1752
Score = 3803 (1343.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 756/1355 (55%), Positives = 971/1355 (71%)
Query: 7 YSPAEVA--KVRMVQFGILSPDEIRQMSVVQIEHGETT-ERG-KPKPGGLSDPRLGTIDR 62
+SP+ V +V VQFGILSP+EIR MSV +IE ET E G +P+ GGL DPRLGTIDR
Sbjct: 6 FSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDR 65
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
+ KC+TC MA+CPGHFGH+ELAKP+FHIGF+ + I+ VC+NC K+ D + KF
Sbjct: 66 QFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFN 125
Query: 123 QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP-LKKNKGGCGAQQPKLTIE 181
+ R+PKNRL + + CK K C+ G D P GGCGA QP + +
Sbjct: 126 DTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAAQPTIRKD 185
Query: 182 GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
G+++ +K + D+ LPE K+ L+ V + IS ED LGLN +YARP
Sbjct: 186 GLRLWGSWK----RGKDESDLPE----KRLLSPLEVHTIFTHISSEDLAHLGLNEQYARP 237
Query: 242 DWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
DWMI+ VL DDLTH+L+ II+ N N+RR E+ GAPAHI+SE
Sbjct: 238 DWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSE 297
Query: 292 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
+ QLLQFH+ATY DNE+ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSART
Sbjct: 298 YEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSART 357
Query: 352 VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
VIT DP +++D+LGVP SIA LTYPETVTPYNI +L+ELV GP PG AKYIIRD
Sbjct: 358 VITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPG---AKYIIRD 414
Query: 412 DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
G+R+DLRY K++ D L G++VERH+ DGD V+FNRQPSLHKMS+MGHRI++MPYSTF
Sbjct: 415 TGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTF 474
Query: 472 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
RLNLSVTSPYNADFDGDEMNMHVPQS ETRAE+ E+ MVPK IVSPQSN+PVMGIVQDTL
Sbjct: 475 RLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTL 534
Query: 532 LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
G RK + RD F+ ++ MNI++W D+DG +P P ILKP+ LWTGKQ+ +LIIPK INL
Sbjct: 535 AGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGINL 594
Query: 592 FRTAAWHADNDKGILT-AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
R D+DK L+ D+ + IE GE++ G + KKT+G S G L+H IW+E GP+
Sbjct: 595 IR------DDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEIC 648
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
+ F Q +VNYWLL N FSIGIGDTIADA TM+ + T+ +A+ V I+ AQ L
Sbjct: 649 KGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRL 708
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
+PEPG T+ ESFE KV+++LN ARD AG SA+ SL +SNN+K MV AGSKGSFINISQM+
Sbjct: 709 KPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMS 768
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
ACVGQQ VEGKRIPFGF RTLPHF KDD PESRGF+ENSYLRGLTPQEFFFHAM GRE
Sbjct: 769 ACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGRE 828
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKT+ETGYIQRRLVKAMED+MV+YDGTVRN++GD+IQF YGEDG+D+ +E Q
Sbjct: 829 GLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQV 888
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
DSL++ +F+K +R ++ E+ YM +D ++D+ D E +L ADR
Sbjct: 889 FDSLRLSTKQFEKKYRIDLMEDRSLSLYMENSIEND----SSVQDLLDEEYTQLVADREL 944
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
L I GD+ WPLPVN++R+I NA + F ++ ++P+D+ P +++ +++L +L +
Sbjct: 945 LCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFR 1004
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
G D ++ + Q NATL F ILLRS FA KRV+ E+RL + AFEW++GE+E+RF Q++V+PG
Sbjct: 1005 GSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPG 1064
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTPSL+++L
Sbjct: 1065 EMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYLM 1124
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
P + + + AKNVQ +E+TTL +VT ATE+ YDPDP T+IEED +FV++++ +PDE++
Sbjct: 1125 PWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEV 1184
Query: 1191 APE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
K SPWLLR+EL+R M+DKKLSM+ VA KI + F+ DL I+++DNADKLI+R R
Sbjct: 1185 EENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRCR 1244
Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-NLLAVMCHEDVDARRT---TS 1304
I+ D+ K E +D E+DVFLK IE +ML ++LRGV N+ V E R+ T
Sbjct: 1245 IIRDDDRKAEDDDNMIEEDVFLKTIEGHMLESISLRGVPNITRVYMMEHKIVRQIEDGTF 1304
Query: 1305 NHLIE-IIEVLGIEAVRRALLDELRVVISFDGSYV 1338
E ++E GI ++ + ++ S+V
Sbjct: 1305 ERADEWVLETDGINLTEAMTVEGVDATRTYSNSFV 1339
Score = 529 (191.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 120/226 (53%), Positives = 152/226 (67%)
Query: 1265 EDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
ED F + E + T+ G+NL M E VDA RT SN +EI+++LGIEA R ALL
Sbjct: 1300 EDGTFERADEWVLETD----GINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALL 1355
Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
ELR VI FDGSYVNYRHLA+LCD MT RGHLMAITRHGINR +TG +MRCSFEETV+IL
Sbjct: 1356 KELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEIL 1415
Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKN-AIELQLPSYMEGLEFG 1443
+DAA E D +G++ENIMLGQLAP+GTG +YL+ +ML N ++ +P+ + G G
Sbjct: 1416 MDAAASGEKDDCKGISENIMLGQLAPMGTGAFDIYLDQDMLMNYSLGTAVPT-LAGS--G 1472
Query: 1444 MTPARSPV-SGTPYHDG-MMSPGYLFSPNLRLSPVTDAQFSPYVGG 1487
M ++ P +GTPY M+ G++ SP+ A FSP V G
Sbjct: 1473 MGTSQLPEGAGTPYERSPMVDSGFVGSPDA-------AAFSPLVQG 1511
Score = 48 (22.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 1438 EGL-EFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSP---VTDAQFSP 1483
EG ++G+ A SP + G+ SPGY + +SP +T +SP
Sbjct: 1517 EGFGDYGLLGAASP------YKGVQSPGYTSPFSSAMSPGYGLTSPSYSP 1560
>WB|WBGene00000123 [details] [associations]
symbol:ama-1 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0010458 "exit from mitosis" evidence=IMP]
[GO:0008356 "asymmetric cell division" evidence=IMP] [GO:0032502
"developmental process" evidence=IMP] [GO:0006479 "protein
methylation" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001055 "RNA polymerase II
activity" evidence=IMP] [GO:0042789 "mRNA transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 GO:GO:0005634
GO:GO:0009792 GO:GO:0040010 GO:GO:0007052 GO:GO:0010458
GO:GO:0046872 GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006479 GO:GO:0008356 GO:GO:0007369
GO:GO:0042789 EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665
EMBL:M29235 PIR:A34092 PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356
STRING:P16356 PaxDb:P16356 EnsemblMetazoa:F36A4.7.1
EnsemblMetazoa:F36A4.7.2 GeneID:177190 KEGG:cel:CELE_F36A4.7
UCSC:F36A4.7 CTD:247749 WormBase:F36A4.7
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975 InParanoid:P16356
OMA:KVLPWST NextBio:895720 GO:GO:0001055 Uniprot:P16356
Length = 1856
Score = 3701 (1307.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 725/1297 (55%), Positives = 951/1297 (73%)
Query: 15 VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMA 74
V VQFGIL P+EI++MSV +E E E GKPK GGL DPR G IDR+ +C TC N+
Sbjct: 15 VSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLT 74
Query: 75 ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NPKN 132
+CPGHFGHLELAKP+FHIGF+ L I+R VCF C ++L D+ + + LK N K
Sbjct: 75 DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKK 134
Query: 133 RLKKILDACKNKTKCEGGDEID--VPGQDGEEPL---KKNKGGCGAQQPKLTIEGMKMIA 187
RL I D CK K+ CEG E + +P D ++P+ KK GGCG QP G+ + A
Sbjct: 135 RLTMIYDLCKAKSVCEGAAEKEEGMP-DDPDDPMNDGKKVAGGCGRYQPSYRRVGIDINA 193
Query: 188 EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQ 247
E+K + N+D + ERK LTAERVL V ++I+DED ++G++P++ARP+WMI
Sbjct: 194 EWK--KNVNEDTQ------ERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICT 245
Query: 248 VL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
VL DDLTH+L+ II+ N+ L+R E NGA AH++++ +LLQ
Sbjct: 246 VLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQ 305
Query: 298 FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
FH+AT DN +PG P ATQ+ GRP+KSI RLK KEGRIRGNLMGKRVDFSARTVIT DP
Sbjct: 306 FHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADP 365
Query: 358 TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
+ ID +GVP +IA NLT+PE VTP+N+++L+ELV G PG AKYIIR++G R+D
Sbjct: 366 NLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPG---AKYIIRENGARVD 422
Query: 418 LRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 477
LRY +++D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+STFR+NLSV
Sbjct: 423 LRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSV 482
Query: 478 TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
TSPYNADFDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQDTL R +
Sbjct: 483 TSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMM 542
Query: 538 TKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAW 597
TKRD FI+ M++LM+ +DGKVPQP ILKP+PLWTGKQVF+LIIP +N+ RT +
Sbjct: 543 TKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHST 602
Query: 598 HADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
H D+ D G ++ GDT V IE GELLSG +C KT+G S G+L+HV+ E+G + A F
Sbjct: 603 HPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANF 662
Query: 654 LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
H Q ++N WL++ +IGIGDTIAD T I +TI KAK +V ++I++A + LEP
Sbjct: 663 YSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPT 722
Query: 714 PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
PG T+ ++FENKVNQ+LN ARD GSSAQKSLSE NN K+MV +GSKGS INISQ+ ACV
Sbjct: 723 PGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACV 782
Query: 774 GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
GQQNVEGKRIPFGF RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREGLI
Sbjct: 783 GQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLI 842
Query: 834 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDS 893
DTAVKT+ETGYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+D +W+E+Q + +
Sbjct: 843 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPT 902
Query: 894 LKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLA 952
+K + F++ FR ++ + + NY ++ + +++ ++ + ++E +LE DR +L
Sbjct: 903 MKPNNAVFERDFRMDLTDNKFLRKNYS-EDVVREIQESEDGISLVESEWSQLEEDR-RLL 960
Query: 953 TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGE 1012
+I GD+ LP NL+RLIWNAQK FKVD R+P ++ P+ V+ V +L ++L +V G
Sbjct: 961 RKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGN 1020
Query: 1013 DPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEM 1072
D +S +AQ NATL NILLRST +K + + +L EAF+W++GEIESRF Q++ PGEM
Sbjct: 1021 DEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEM 1080
Query: 1073 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPG 1132
+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K +KTPSL+VFL
Sbjct: 1081 VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGA 1140
Query: 1133 VNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAP 1192
E+AK+V C LE+TTL+ VT T ++YDPDP T+I ED E+V +YEMPD D++
Sbjct: 1141 AAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLS- 1199
Query: 1193 EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMND 1252
+ SPWLLRIEL+R+ MVDKKL+M +A++I+ F +D+ I+ DDNA+KL+ R+RI +
Sbjct: 1200 -RTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGE 1258
Query: 1253 EAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV 1286
+ KGE +E EDDVFL+ IE+NML+++ L+G+
Sbjct: 1259 D--KGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1293
Score = 484 (175.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 111/207 (53%), Positives = 138/207 (66%)
Query: 1285 GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1344
G LL V+ +D RTTSN + EI EVLGIEAVR+A+ E+ VISFDGSYVNYRHLA
Sbjct: 1332 GTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLA 1391
Query: 1345 ILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIM 1404
+LCD MT +GHLMAITRHGINR + G +MRCSFEETVDIL++AAV AE D ++GV+ENIM
Sbjct: 1392 LLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIM 1451
Query: 1405 LGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPG 1464
LGQLA GTG L L+ E K +E+ M G +G +G+P + SP
Sbjct: 1452 LGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGS------FAGSP-SNREFSPA 1504
Query: 1465 YLFSP-NLRLSPV-TDAQFSPYVGGMA 1489
+ SP N ++P A +SP GGM+
Sbjct: 1505 H--SPWNSGVTPTYAGAAWSPTTGGMS 1529
Score = 51 (23.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 1443 GMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGG 1487
G+TP + + +P GM SPG FSP + TD SP+ G
Sbjct: 1511 GVTPTYAGAAWSPTTGGM-SPGAGFSP----AGNTDGGASPFNEG 1550
Score = 50 (22.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 1443 GMTPARSPVSG-TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMA 1489
G +PA + G +P+++G SP P LSP T P GGM+
Sbjct: 1533 GFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRT-----PSYGGMS 1575
Score = 44 (20.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 1445 TPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSP 1483
+P+ +P S P + SP Y SP+ + P T AQ+SP
Sbjct: 1793 SPSYTPSS--PQYSPT-SPTYTPSPSEQ--PGTSAQYSP 1826
Score = 37 (18.1 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 178 LTIEGMKMIAEYKAQRKKNDDQEQL 202
LT++G+ I++ + DD++++
Sbjct: 1288 LTLQGIPAISKVYMNQPNTDDKKRI 1312
>UNIPROTKB|P16356 [details] [associations]
symbol:ama-1 "DNA-directed RNA polymerase II subunit RPB1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0007052 GO:GO:0010458 GO:GO:0046872
GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0006479 GO:GO:0008356 GO:GO:0007369 GO:GO:0042789
EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665 EMBL:M29235 PIR:A34092
PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356 STRING:P16356
PaxDb:P16356 EnsemblMetazoa:F36A4.7.1 EnsemblMetazoa:F36A4.7.2
GeneID:177190 KEGG:cel:CELE_F36A4.7 UCSC:F36A4.7 CTD:247749
WormBase:F36A4.7 GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975
InParanoid:P16356 OMA:KVLPWST NextBio:895720 GO:GO:0001055
Uniprot:P16356
Length = 1856
Score = 3701 (1307.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 725/1297 (55%), Positives = 951/1297 (73%)
Query: 15 VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMA 74
V VQFGIL P+EI++MSV +E E E GKPK GGL DPR G IDR+ +C TC N+
Sbjct: 15 VSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLT 74
Query: 75 ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NPKN 132
+CPGHFGHLELAKP+FHIGF+ L I+R VCF C ++L D+ + + LK N K
Sbjct: 75 DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKK 134
Query: 133 RLKKILDACKNKTKCEGGDEID--VPGQDGEEPL---KKNKGGCGAQQPKLTIEGMKMIA 187
RL I D CK K+ CEG E + +P D ++P+ KK GGCG QP G+ + A
Sbjct: 135 RLTMIYDLCKAKSVCEGAAEKEEGMP-DDPDDPMNDGKKVAGGCGRYQPSYRRVGIDINA 193
Query: 188 EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQ 247
E+K + N+D + ERK LTAERVL V ++I+DED ++G++P++ARP+WMI
Sbjct: 194 EWK--KNVNEDTQ------ERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWMICT 245
Query: 248 VL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
VL DDLTH+L+ II+ N+ L+R E NGA AH++++ +LLQ
Sbjct: 246 VLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVRLLQ 305
Query: 298 FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
FH+AT DN +PG P ATQ+ GRP+KSI RLK KEGRIRGNLMGKRVDFSARTVIT DP
Sbjct: 306 FHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITADP 365
Query: 358 TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
+ ID +GVP +IA NLT+PE VTP+N+++L+ELV G PG AKYIIR++G R+D
Sbjct: 366 NLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPG---AKYIIRENGARVD 422
Query: 418 LRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 477
LRY +++D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+STFR+NLSV
Sbjct: 423 LRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSV 482
Query: 478 TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
TSPYNADFDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQDTL R +
Sbjct: 483 TSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMM 542
Query: 538 TKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAW 597
TKRD FI+ M++LM+ +DGKVPQP ILKP+PLWTGKQVF+LIIP +N+ RT +
Sbjct: 543 TKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRTHST 602
Query: 598 HADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
H D+ D G ++ GDT V IE GELLSG +C KT+G S G+L+HV+ E+G + A F
Sbjct: 603 HPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANF 662
Query: 654 LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
H Q ++N WL++ +IGIGDTIAD T I +TI KAK +V ++I++A + LEP
Sbjct: 663 YSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDLEPT 722
Query: 714 PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
PG T+ ++FENKVNQ+LN ARD GSSAQKSLSE NN K+MV +GSKGS INISQ+ ACV
Sbjct: 723 PGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVIACV 782
Query: 774 GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
GQQNVEGKRIPFGF RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREGLI
Sbjct: 783 GQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLI 842
Query: 834 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDS 893
DTAVKT+ETGYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+D +W+E+Q + +
Sbjct: 843 DTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQNMPT 902
Query: 894 LKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLA 952
+K + F++ FR ++ + + NY ++ + +++ ++ + ++E +LE DR +L
Sbjct: 903 MKPNNAVFERDFRMDLTDNKFLRKNYS-EDVVREIQESEDGISLVESEWSQLEEDR-RLL 960
Query: 953 TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGE 1012
+I GD+ LP NL+RLIWNAQK FKVD R+P ++ P+ V+ V +L ++L +V G
Sbjct: 961 RKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGN 1020
Query: 1013 DPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEM 1072
D +S +AQ NATL NILLRST +K + + +L EAF+W++GEIESRF Q++ PGEM
Sbjct: 1021 DEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEM 1080
Query: 1073 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPG 1132
+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K +KTPSL+VFL
Sbjct: 1081 VGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLTVFLTGA 1140
Query: 1133 VNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAP 1192
E+AK+V C LE+TTL+ VT T ++YDPDP T+I ED E+V +YEMPD D++
Sbjct: 1141 AAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMPDHDLS- 1199
Query: 1193 EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMND 1252
+ SPWLLRIEL+R+ MVDKKL+M +A++I+ F +D+ I+ DDNA+KL+ R+RI +
Sbjct: 1200 -RTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFRLRIAGE 1258
Query: 1253 EAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV 1286
+ KGE +E EDDVFL+ IE+NML+++ L+G+
Sbjct: 1259 D--KGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1293
Score = 484 (175.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 111/207 (53%), Positives = 138/207 (66%)
Query: 1285 GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1344
G LL V+ +D RTTSN + EI EVLGIEAVR+A+ E+ VISFDGSYVNYRHLA
Sbjct: 1332 GTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLA 1391
Query: 1345 ILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIM 1404
+LCD MT +GHLMAITRHGINR + G +MRCSFEETVDIL++AAV AE D ++GV+ENIM
Sbjct: 1392 LLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIM 1451
Query: 1405 LGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPG 1464
LGQLA GTG L L+ E K +E+ M G +G +G+P + SP
Sbjct: 1452 LGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYGS------FAGSP-SNREFSPA 1504
Query: 1465 YLFSP-NLRLSPV-TDAQFSPYVGGMA 1489
+ SP N ++P A +SP GGM+
Sbjct: 1505 H--SPWNSGVTPTYAGAAWSPTTGGMS 1529
Score = 51 (23.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 1443 GMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGG 1487
G+TP + + +P GM SPG FSP + TD SP+ G
Sbjct: 1511 GVTPTYAGAAWSPTTGGM-SPGAGFSP----AGNTDGGASPFNEG 1550
Score = 50 (22.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 1443 GMTPARSPVSG-TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMA 1489
G +PA + G +P+++G SP P LSP T P GGM+
Sbjct: 1533 GFSPAGNTDGGASPFNEGGWSPASPGDPLGALSPRT-----PSYGGMS 1575
Score = 44 (20.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 1445 TPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSP 1483
+P+ +P S P + SP Y SP+ + P T AQ+SP
Sbjct: 1793 SPSYTPSS--PQYSPT-SPTYTPSPSEQ--PGTSAQYSP 1826
Score = 37 (18.1 bits), Expect = 2.2e-39, Sum P(2) = 2.2e-39
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 178 LTIEGMKMIAEYKAQRKKNDDQEQL 202
LT++G+ I++ + DD++++
Sbjct: 1288 LTLQGIPAISKVYMNQPNTDDKKRI 1312
>CGD|CAL0000919 [details] [associations]
symbol:RPO21 species:5476 "Candida albicans" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 CGD:CAL0000919
GO:GO:0071216 GO:GO:0036180 GO:GO:0003677 GO:GO:0006366
GO:GO:0009267 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1 STRING:Q5ACI7
GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 3699 (1307.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 733/1301 (56%), Positives = 947/1301 (72%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLG 58
M +FPYS A + V+ VQFG+LSP+E+R +SV +IE+ ET ++ +P+ GGL+DPRLG
Sbjct: 1 MSRQFPYSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLG 60
Query: 59 TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
+IDR +C+TC +MAECPGHFGH+ELAKP+FHIGF+ + SVC +C K+L DE +
Sbjct: 61 SIDRNFRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETN 120
Query: 119 HKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKL 178
QA+KIR+PK R + CK K CE + D + ++P ++GGCG QP +
Sbjct: 121 PAMAQAIKIRDPKKRFNAVWSLCKTKMVCETDNNED---EMTDQP---SRGGCGHPQPTI 174
Query: 179 TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
+G+K+ +K Q K DD +Q PE ++ LT +L V K IS EDC +G N Y
Sbjct: 175 RRDGLKLWGTWK-QNKNYDDNDQ-PE----RRLLTPSEILNVFKHISPEDCYKMGFNEDY 228
Query: 239 ARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
ARP+WM++ VL DDLT +LA II+ N N++R E +G+P H+
Sbjct: 229 ARPEWMLITVLPVPPPPVRPSIAFNETARGEDDLTFKLADIIKANINVQRLETDGSPQHV 288
Query: 289 ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
ISEF LLQFH+ATY DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFS
Sbjct: 289 ISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFS 348
Query: 349 ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
ARTVI+ DP +++DQ+GVP SIA LTYPE VTPYNI +L ELV GP+ PG AKY+
Sbjct: 349 ARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPG---AKYV 405
Query: 409 IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
IRD G R+DLRY K++ D L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+++MPY
Sbjct: 406 IRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPY 465
Query: 469 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
STFRLNLSVTSPYNADFDGDEMN+HVPQS ETR+E+ ++ VP IVSPQSN+PVMGIVQ
Sbjct: 466 STFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQ 525
Query: 529 DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
DTL G RK+T RD FIE D MN+ W ++DG +P P ++KP+ LWTGKQ+ +L IPK
Sbjct: 526 DTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAVVKPKQLWTGKQLLSLAIPKG 585
Query: 589 INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
I+L R D + +L+ DT + I GE++ G + KKT+G + G LIH + E GP
Sbjct: 586 IHLQRF-----DGGRDLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPK 640
Query: 649 AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
+ Q +VNYWLL N FSIGIGDTIADA+TM +N TI +AK V+ +I AQ
Sbjct: 641 VCAELFSSIQKVVNYWLLHNGFSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHN 700
Query: 709 SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
LEPEPG T+ ESFE+ V++VLN ARD AG SA+ SL + NN+K MVT+GSKGSFINISQ
Sbjct: 701 KLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQ 760
Query: 769 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
M+ACVGQQ VEGKRIPFGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM G
Sbjct: 761 MSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAG 820
Query: 829 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
REGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D +E
Sbjct: 821 REGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEK 880
Query: 889 QTLDSLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
Q++D++ F++ ++ + +D EN +L+ +++ +L+ + D E +L D
Sbjct: 881 QSVDTIPGSDESFERRYKIDVLDTENVISESLLESG-KEIRGDVQLQKILDEEYNQLLKD 939
Query: 948 RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1007
R L +GD SWPLPVNL+R+I NAQ+ F R SD+ E+V V +L +L
Sbjct: 940 RKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEEIVLGVKELCMKLL 999
Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
VV G+ PL EAQ+NATL F LLRS A++RV++E +L R +FEWV+GEIE++F +S+V
Sbjct: 1000 VVRGDTPLVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIV 1059
Query: 1068 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1127
PGEM+G VAAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTP+++V
Sbjct: 1060 HPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTV 1119
Query: 1128 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1187
FL P V S E+AK VQ A+E+TTL++VT +TE++YDPDP T+IE+D + V++Y+ +PD
Sbjct: 1120 FLDPEVASDIEKAKIVQSAIEHTTLKNVTSSTEIYYDPDPRTTVIEDDYDTVEAYFAIPD 1179
Query: 1188 EDIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
+ + +K SPWLLR+EL+R M+DK+L+MA VAEKI+Q F +DL I++DD ADKLI+
Sbjct: 1180 QKVEESIDKQSPWLLRLELDRAKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLII 1239
Query: 1246 RIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV 1286
R R++ D PK D AE+D LK+IE++ML ++LRG+
Sbjct: 1240 RCRVVRD--PKSLDEDADAEEDQILKRIEAHMLESISLRGI 1278
Score = 470 (170.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 106/207 (51%), Positives = 130/207 (62%)
Query: 1285 GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1344
GVNL VM VD+ RT SN IE++ VLGIEA R +L E+ VI+FDGSYVNYRH+A
Sbjct: 1312 GVNLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMA 1371
Query: 1345 ILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIM 1404
+L D MT RGHLMAITRHGINR+DTG +MRCSFEETV+ILLDAA AE D +G++EN+M
Sbjct: 1372 LLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAELDDCKGISENVM 1431
Query: 1405 LGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHD--GMMS 1462
LGQ+AP+GTG L ++D ML+ A PS M M TPY D
Sbjct: 1432 LGQMAPLGTGSFDLMVDDRMLQKA-----PSSM-----AMDDIADGGGATPYKDYENARD 1481
Query: 1463 PGYLFSPNLRLSPVTDAQFSP-YVGGM 1488
SP+ AQ + +GG+
Sbjct: 1482 ENIDIDAGAGFSPIHIAQMNEGNIGGL 1508
Score = 43 (20.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 1439 GL-EFGMTPARSPVSGTPY---HDGMMSPGYLFSPNLRLSPV------TDAQFSP 1483
GL +G P SP + +P+ ++ + SPGY SP SP T ++P
Sbjct: 1507 GLTSYGGQPT-SPAATSPFSYGYNSITSPGYT-SPGYGYSPTSPSYSPTSPSYAP 1559
Score = 40 (19.1 bits), Expect = 0., Sum P(3) = 0.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 1295 EDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
ED +R + H++E I + GI + R + + +V
Sbjct: 1258 EDQILKRIEA-HMLESISLRGIPGITRVFMMQHKV 1291
>UNIPROTKB|Q5ACI7 [details] [associations]
symbol:RPO21 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 CGD:CAL0000919 GO:GO:0071216 GO:GO:0036180
GO:GO:0003677 GO:GO:0006366 GO:GO:0009267 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1
STRING:Q5ACI7 GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 3699 (1307.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 733/1301 (56%), Positives = 947/1301 (72%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLG 58
M +FPYS A + V+ VQFG+LSP+E+R +SV +IE+ ET ++ +P+ GGL+DPRLG
Sbjct: 1 MSRQFPYSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLG 60
Query: 59 TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
+IDR +C+TC +MAECPGHFGH+ELAKP+FHIGF+ + SVC +C K+L DE +
Sbjct: 61 SIDRNFRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETN 120
Query: 119 HKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKL 178
QA+KIR+PK R + CK K CE + D + ++P ++GGCG QP +
Sbjct: 121 PAMAQAIKIRDPKKRFNAVWSLCKTKMVCETDNNED---EMTDQP---SRGGCGHPQPTI 174
Query: 179 TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
+G+K+ +K Q K DD +Q PE ++ LT +L V K IS EDC +G N Y
Sbjct: 175 RRDGLKLWGTWK-QNKNYDDNDQ-PE----RRLLTPSEILNVFKHISPEDCYKMGFNEDY 228
Query: 239 ARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
ARP+WM++ VL DDLT +LA II+ N N++R E +G+P H+
Sbjct: 229 ARPEWMLITVLPVPPPPVRPSIAFNETARGEDDLTFKLADIIKANINVQRLETDGSPQHV 288
Query: 289 ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
ISEF LLQFH+ATY DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFS
Sbjct: 289 ISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFS 348
Query: 349 ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
ARTVI+ DP +++DQ+GVP SIA LTYPE VTPYNI +L ELV GP+ PG AKY+
Sbjct: 349 ARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPG---AKYV 405
Query: 409 IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
IRD G R+DLRY K++ D L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+++MPY
Sbjct: 406 IRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPY 465
Query: 469 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
STFRLNLSVTSPYNADFDGDEMN+HVPQS ETR+E+ ++ VP IVSPQSN+PVMGIVQ
Sbjct: 466 STFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQ 525
Query: 529 DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
DTL G RK+T RD FIE D MN+ W ++DG +P P ++KP+ LWTGKQ+ +L IPK
Sbjct: 526 DTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAVVKPKQLWTGKQLLSLAIPKG 585
Query: 589 INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
I+L R D + +L+ DT + I GE++ G + KKT+G + G LIH + E GP
Sbjct: 586 IHLQRF-----DGGRDLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPK 640
Query: 649 AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
+ Q +VNYWLL N FSIGIGDTIADA+TM +N TI +AK V+ +I AQ
Sbjct: 641 VCAELFSSIQKVVNYWLLHNGFSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHN 700
Query: 709 SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
LEPEPG T+ ESFE+ V++VLN ARD AG SA+ SL + NN+K MVT+GSKGSFINISQ
Sbjct: 701 KLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQ 760
Query: 769 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
M+ACVGQQ VEGKRIPFGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM G
Sbjct: 761 MSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAG 820
Query: 829 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
REGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D +E
Sbjct: 821 REGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEK 880
Query: 889 QTLDSLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
Q++D++ F++ ++ + +D EN +L+ +++ +L+ + D E +L D
Sbjct: 881 QSVDTIPGSDESFERRYKIDVLDTENVISESLLESG-KEIRGDVQLQKILDEEYNQLLKD 939
Query: 948 RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1007
R L +GD SWPLPVNL+R+I NAQ+ F R SD+ E+V V +L +L
Sbjct: 940 RKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEEIVLGVKELCMKLL 999
Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
VV G+ PL EAQ+NATL F LLRS A++RV++E +L R +FEWV+GEIE++F +S+V
Sbjct: 1000 VVRGDTPLVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIV 1059
Query: 1068 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1127
PGEM+G VAAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTP+++V
Sbjct: 1060 HPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTV 1119
Query: 1128 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1187
FL P V S E+AK VQ A+E+TTL++VT +TE++YDPDP T+IE+D + V++Y+ +PD
Sbjct: 1120 FLDPEVASDIEKAKIVQSAIEHTTLKNVTSSTEIYYDPDPRTTVIEDDYDTVEAYFAIPD 1179
Query: 1188 EDIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
+ + +K SPWLLR+EL+R M+DK+L+MA VAEKI+Q F +DL I++DD ADKLI+
Sbjct: 1180 QKVEESIDKQSPWLLRLELDRAKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLII 1239
Query: 1246 RIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV 1286
R R++ D PK D AE+D LK+IE++ML ++LRG+
Sbjct: 1240 RCRVVRD--PKSLDEDADAEEDQILKRIEAHMLESISLRGI 1278
Score = 470 (170.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 106/207 (51%), Positives = 130/207 (62%)
Query: 1285 GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1344
GVNL VM VD+ RT SN IE++ VLGIEA R +L E+ VI+FDGSYVNYRH+A
Sbjct: 1312 GVNLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMA 1371
Query: 1345 ILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIM 1404
+L D MT RGHLMAITRHGINR+DTG +MRCSFEETV+ILLDAA AE D +G++EN+M
Sbjct: 1372 LLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAAAELDDCKGISENVM 1431
Query: 1405 LGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHD--GMMS 1462
LGQ+AP+GTG L ++D ML+ A PS M M TPY D
Sbjct: 1432 LGQMAPLGTGSFDLMVDDRMLQKA-----PSSM-----AMDDIADGGGATPYKDYENARD 1481
Query: 1463 PGYLFSPNLRLSPVTDAQFSP-YVGGM 1488
SP+ AQ + +GG+
Sbjct: 1482 ENIDIDAGAGFSPIHIAQMNEGNIGGL 1508
Score = 43 (20.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 1439 GL-EFGMTPARSPVSGTPY---HDGMMSPGYLFSPNLRLSPV------TDAQFSP 1483
GL +G P SP + +P+ ++ + SPGY SP SP T ++P
Sbjct: 1507 GLTSYGGQPT-SPAATSPFSYGYNSITSPGYT-SPGYGYSPTSPSYSPTSPSYAP 1559
Score = 40 (19.1 bits), Expect = 0., Sum P(3) = 0.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 1295 EDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
ED +R + H++E I + GI + R + + +V
Sbjct: 1258 EDQILKRIEA-HMLESISLRGIPGITRVFMMQHKV 1291
>SGD|S000002299 [details] [associations]
symbol:RPO21 "RNA polymerase II largest subunit B220"
species:4932 "Saccharomyces cerevisiae" [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 SGD:S000002299 GO:GO:0005739
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:X96876 EMBL:U27182
GO:GO:0003899 PDB:4GWQ PDBsum:4GWQ PDB:2LO6 PDBsum:2LO6
eggNOG:COG0086 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
EMBL:X03128 EMBL:Z74188 PIR:S67686 RefSeq:NP_010141.1 PDB:2L0I
PDBsum:2L0I ProteinModelPortal:P04050 SMR:P04050 DIP:DIP-611N
IntAct:P04050 MINT:MINT-432838 STRING:P04050 PaxDb:P04050
PeptideAtlas:P04050 EnsemblFungi:YDL140C GeneID:851415
KEGG:sce:YDL140C CYGD:YDL140c GeneTree:ENSGT00700000105212
EvolutionaryTrace:P04050 NextBio:968606 ArrayExpress:P04050
Genevestigator:P04050 GermOnline:YDL140C Uniprot:P04050
Length = 1733
Score = 3506 (1239.2 bits), Expect = 0., Sum P(2) = 0.
Identities = 713/1355 (52%), Positives = 942/1355 (69%)
Query: 7 YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
YS A + V+ VQFG+ SP+E+R +SV +I ET + + + K GGL+DPRLG+IDR +
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
KC+TC M ECPGHFGH++LAKP+FH+GF+ + + VC +C K+L DE + +QA
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125
Query: 125 LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
L I++ K R I CK K CE DVP +D L ++GGCG QP + +G+K
Sbjct: 126 LAIKDSKKRFAAIWTLCKTKMVCE----TDVPSEDDPTQLV-SRGGCGNTQPTIRKDGLK 180
Query: 185 MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
++ +K R D E PE + L+ E +L + K IS +D LG N ++RP+WM
Sbjct: 181 LVGSWKKDRATGDADE--PE----LRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWM 234
Query: 245 ILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
IL L DDLT +LA I++ N +L E NGAP H I E
Sbjct: 235 ILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAES 294
Query: 295 LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+
Sbjct: 295 LLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS 354
Query: 355 PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
DP + +DQ+GVP SIA LTYPE VTPYNI+RL +LV GP+ PG AKY+IRD G
Sbjct: 355 GDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDSGD 411
Query: 415 RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
R+DLRY K++ D L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLN
Sbjct: 412 RIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLN 471
Query: 475 LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
LSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L VP IVSPQSN+P MGIVQDTL G
Sbjct: 472 LSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGI 531
Query: 535 RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
RK+T RDTFIE D +N+L W D+DG +P P I+KP+PLW+GKQ+ ++ IP I+L R
Sbjct: 532 RKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRF 591
Query: 595 AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
D +L+ D + I G+++ G + KKT+G+S G LIHV+ E GP K
Sbjct: 592 -----DEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLF 646
Query: 655 GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
G+ Q +VN+WLL N FS GIGDTIAD TM I +TI++AK V ++ K+AQ L +
Sbjct: 647 GNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKH 706
Query: 715 GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
G T+ ESFE+ V + LN ARD+AG A+ +L + NN+K MV AGSKGSFINI+QM+ACVG
Sbjct: 707 GMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG 766
Query: 775 QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
QQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 767 QQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLID 826
Query: 835 TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
TAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDGMD+ IE Q+LD++
Sbjct: 827 TAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTI 886
Query: 895 KMKKSEFDKAFRFEM--DEENWNPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
+ F+K +R ++ + +P+ + E + DLK L+ + D E ++L DR +
Sbjct: 887 GGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLK----LQVLLDEEYKQLVKDR-K 941
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
E+ G+++WPLPVN++R+I NAQ+TF +D +PSD+ ++V V LQE L V+
Sbjct: 942 FLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLR 1001
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
G++ + AQ++A F LLRS A++RVL+E+RLT++AF+WV+ IE++FL+S+V PG
Sbjct: 1002 GKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPG 1061
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L+
Sbjct: 1062 EMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLE 1121
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
PG + +E+AK ++ A+E+TTL+SVT A+E++YDPDP T+I ED E ++ ++ + DE+
Sbjct: 1122 PGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEA 1181
Query: 1191 AP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
++ SPWLLR+EL+R M DK L+M V E+I Q F +DL I+++DN +KLI+R R
Sbjct: 1182 EQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCR 1241
Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLL--AVMCHEDVDARRTTSNH 1306
++ PK + AE+D LKKIE+ ML + LRGV + VM D T +
Sbjct: 1242 VVR---PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEY 1298
Query: 1307 LIEIIEVLGIEAVRRALLDELRVVISFDGS--YVN 1339
+ E VL + V L E+ V D + Y N
Sbjct: 1299 VKEPEWVLETDGVN---LSEVMTVPGIDPTRIYTN 1330
Score = 416 (151.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 99/206 (48%), Positives = 131/206 (63%)
Query: 1285 GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1344
GVNL VM +D R +N I+I+EVLGIEA R AL E+ VI+ DGSYVNYRH+A
Sbjct: 1310 GVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMA 1369
Query: 1345 ILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIM 1404
+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A AE D RGV+EN++
Sbjct: 1370 LLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVI 1429
Query: 1405 LGQLAPIGTGDCSLYLNDEML-KNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSP 1463
LGQ+APIGTG + +++E L K E ++ +G + G+TP S SG D +
Sbjct: 1430 LGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPY-SNESGLVNADLDVKD 1488
Query: 1464 GYLFSPNLRLSPVTDAQ---FSPYVG 1486
+FSP L S DA F+ Y G
Sbjct: 1489 ELMFSP-LVDSGSNDAMAGGFTAYGG 1513
Score = 45 (20.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 1367 NDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIML 1405
ND ++RC LDA AE D++ EN ML
Sbjct: 1232 NDEKLIIRCRVVRPKS--LDAETEAEEDHMLKKIENTML 1268
>ASPGD|ASPL0000054301 [details] [associations]
symbol:AN0809 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 EMBL:BN001308 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACD01000013 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
RefSeq:XP_658413.1 STRING:Q5BF71 EnsemblFungi:CADANIAT00001852
GeneID:2876587 KEGG:ani:AN0809.2 Uniprot:Q5BF71
Length = 1745
Score = 3434 (1213.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 685/1305 (52%), Positives = 917/1305 (70%)
Query: 5 FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
FPYS A + + +QFG+ SP+EI++MSVV +E+ ET + R +P+ GL+DPRLGTIDR
Sbjct: 6 FPYSKAPLRTIAEIQFGLFSPEEIKRMSVVHVEYPETMDDQRQRPRTKGLNDPRLGTIDR 65
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
+ CETC ECPGHFGH+ELA P+FHIGF+ + ++ +VC NC KI A+ D KF
Sbjct: 66 QWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKANTSDPKFL 125
Query: 123 QALKIRNPKNRLKKILDACKNKTKCEGGD--EIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
AL+IR+PK R I K+ CE E D G++ +P++ + GGCG QP +
Sbjct: 126 DALRIRDPKRRFDHIWRLSKDILICEADPPPEDDEYGKESSKPVRLH-GGCGNAQPTVRK 184
Query: 181 EGMKMIAEYKAQRKKNDDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
EG+ ++ +K + D+ + Q PE K+ +T + L + + IS ED +++GL+ YA
Sbjct: 185 EGITLVGTWKPSKSMMDEMDMQQPE----KKIITPQMALNIFRNISHEDVRIMGLSNDYA 240
Query: 240 RPDWMILQVL-------------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPA 286
RP+WMIL VL DDLT++LA I+R N+N++R E+ GAP
Sbjct: 241 RPEWMILTVLPVPPPPVRPSVVVGGSTSGQRGEDDLTYKLAEIVRANQNVQRCEQEGAPE 300
Query: 287 HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
H++ EF LLQ+HIATY DN++ GQP+A Q+S RP+K+I SRLK KEGR+R NLMGKRVD
Sbjct: 301 HVVREFESLLQYHIATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVD 360
Query: 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
FSARTVIT DP +++D++GVP SIA LTYPE VTPYNIE+L++LV GP+ PG A+
Sbjct: 361 FSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNGPNEHPG---AR 417
Query: 407 YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
YI+RD+G+R+DLR+ K++ L G+KVERHL DGD +LFNRQPSLHK S+MGHR+++M
Sbjct: 418 YIVRDNGERIDLRHAKRAGGQQLLYGWKVERHLMDGDVILFNRQPSLHKESMMGHRVRVM 477
Query: 467 PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
PYSTFRLNLSVTSPYNADFDGDEMN+HVPQS E+RAE+ +L +VP+ IVSPQ N P+MGI
Sbjct: 478 PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEESRAELQQLALVPQNIVSPQRNGPLMGI 537
Query: 527 VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
VQDTL G KI +RD F+ K+ MNI+MW D+DG +P P I KPRP WTGKQ+ +++ P
Sbjct: 538 VQDTLCGIYKICRRDVFLTKEQVMNIMMWVPDWDGVIPPPAIFKPRPRWTGKQMISMVFP 597
Query: 587 KQINLFRT-AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
+NL RT + A + + D V I +G+L+ G L KK +G S G +IH+I+ E
Sbjct: 598 SGLNLMRTDSKGAAPSSEKYSPLQDGNVLIHEGQLMYGMLNKKIVGASGGGVIHIIFNEY 657
Query: 646 GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
G DAA F Q +VNYWLL N FSIGIGDTI + +T++ I + + K K V+ + A
Sbjct: 658 GADAAVAFFNGAQAIVNYWLLHNGFSIGIGDTIPNDQTIQAIEECVRKRKLEVEEITATA 717
Query: 706 QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
LEP PG + E+FE+KV+ LNTARDEAG++ +KSL + NN M +GSKGS IN
Sbjct: 718 TQNKLEPLPGMNVRETFESKVSVALNTARDEAGTATEKSLKDLNNAVQMSRSGSKGSIIN 777
Query: 766 ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
ISQMTA VGQQ VEGKRI FGF RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHA
Sbjct: 778 ISQMTAVVGQQMVEGKRIAFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHA 837
Query: 826 MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
M GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD+IQF+YGEDG+D
Sbjct: 838 MAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAH 897
Query: 886 IESQTLDSLKMKKSEFDKAFRFE-MDEE-NWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
IE Q +D L +F + FR + MD + P+ + E +++ E++ D E ++
Sbjct: 898 IEHQKVDILTCSDEKFKERFRIDLMDPALSLGPDVL--EQANEIAGDVEVQRYLDQEWEE 955
Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
L R ++ +A + S PLP+N++R++ A+ TF++ SD+HP EV+ V L
Sbjct: 956 LLKAR-EVVRHVAKGTEDSMPLPINIQRILEMARTTFRIREGTMSDLHPAEVIPQVQSLL 1014
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
+RL +V G+DP+S EAQ++AT+ F LRS A KR++ ++ + + AF+ V+G IESRF
Sbjct: 1015 DRLVIVRGDDPISKEAQESATMLFKAQLRSRLAFKRLVTQYSMNKLAFQHVLGAIESRFA 1074
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
++ APGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA IKTP
Sbjct: 1075 KAAAAPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTP 1134
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
S++V+ +P KE AK ++ A+EYT LRS+TEATE++YDPD T+IE D + V+SY+
Sbjct: 1135 SMTVYQEPERAHDKEGAKQLRSAVEYTNLRSITEATEIYYDPDIQTTVIENDRDMVESYF 1194
Query: 1184 EMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
+P ED+ + + S WLLRI L+R ++DK L++ VA KI Q + D+ IF+D+NAD
Sbjct: 1195 IIP-EDVNDDSSRQSKWLLRIILSRAKLLDKGLTVQDVATKIKQAYPRDIAVIFSDNNAD 1253
Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV 1286
+ ++RIR + D K + +D+ E DV LKK+E ++L + LRGV
Sbjct: 1254 EQVIRIRQIQDY--KEDEDDDDIEYDVTLKKLEQHLLDTLNLRGV 1296
Score = 451 (163.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 108/240 (45%), Positives = 141/240 (58%)
Query: 1246 RIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSN 1305
+IR+ D G L DE + D ++ + E + G +L V+ VDA RT SN
Sbjct: 1309 KIRVQED----GALTDE--QSDPLCRE----WILETS--GSSLAEVLAIPGVDATRTYSN 1356
Query: 1306 HLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1365
IE+ EV GIEA R A+L E VV+SFDGSYVN+RHLA+L D MT RG+L +TRHGIN
Sbjct: 1357 QFIEVFEVFGIEAARAAVLREFTVVLSFDGSYVNHRHLALLVDVMTMRGYLTPVTRHGIN 1416
Query: 1366 RNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEML 1425
R D G +MRCSFEETV+ILL+AA F E D RGV+EN++LGQ+AP GTG+ +YL+ ML
Sbjct: 1417 RADNGALMRCSFEETVEILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDIYLDQNML 1476
Query: 1426 KNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDG--MMSPGYLFSPNLRLSPVTDAQFSP 1483
+ + G S + T Y G M Y+ +P+ P D+ FSP
Sbjct: 1477 NTVVSNNARYGVMGALGAKDAIISDGAATQYDTGSPMQESAYIGTPD----P--DSNFSP 1530
Score = 52 (23.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 1296 DVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV-ISFDGS 1336
DV ++ HL++ + + G+ V RA ++E + + + DG+
Sbjct: 1277 DVTLKKL-EQHLLDTLNLRGVPGVERAFINEKKKIRVQEDGA 1317
>UNIPROTKB|G4MT89 [details] [associations]
symbol:MGG_04652 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0043581 EMBL:CM001232 GO:GO:0003899
GO:GO:0005665 KO:K03006 RefSeq:XP_003713642.1
EnsemblFungi:MGG_04652T0 GeneID:2678092 KEGG:mgr:MGG_04652
Uniprot:G4MT89
Length = 1757
Score = 3259 (1152.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 665/1310 (50%), Positives = 887/1310 (67%)
Query: 5 FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
F S A + + +QFG+L+P+EI+ MSVV +++ +T + R KP+ GGL+DP LGT DR
Sbjct: 6 FAPSSAPLKTIEEIQFGVLAPEEIKNMSVVHVQYPDTMDETRTKPREGGLNDPLLGTTDR 65
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADED-DHKF 121
+ KC+TC +M CPGHFGH+ELAKP++H GF+ I+ VC CSK+L DE+ D +F
Sbjct: 66 QYKCKTCNNDMNNCPGHFGHIELAKPVYHPGFINKTKKILEMVCHQCSKLLCDENNDEQF 125
Query: 122 KQALKIRNPKNRLKKILDACKNKTKCE---GG-DEID-VPGQDGEEPLKKNKGGCGAQQP 176
QAL++R+PK R + ACK K CE GG DE D + G E K GGCG+ P
Sbjct: 126 AQALRLRDPKARFAMVWKACKGKKVCEIETGGKDEKDSIDTATGIE--KVPHGGCGSTHP 183
Query: 177 KLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
+ + +++ A+ + R +E + + V+ K +T E+ +LK I ++D +GLN
Sbjct: 184 DIRKKALQLYAKVEEAR-----EEGMKKEVKDK-LITPEQAHHILKHIPEDDLWKMGLNK 237
Query: 237 KYARPDWMILQVL-------------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNG 283
YARP+W+I+ VL DDLT++L IIR N N+++ G
Sbjct: 238 DYARPEWLIVTVLPVPPPPVRPSISVDGTSQGMRSEDDLTYKLGDIIRANGNVKQAHAEG 297
Query: 284 APAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGK 343
AP HI +EF +LLQ+H+ATY DN++ PR+ Q+SGRPIKSI +RLK KEGR+RGNLMGK
Sbjct: 298 APNHICTEFEELLQYHVATYMDNDIASIPRSLQKSGRPIKSIRARLKGKEGRLRGNLMGK 357
Query: 344 RVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKT 403
RVDFSARTVIT D I++ ++GVP SIA LTYPETVTP+NI+RL + V GP+ PG
Sbjct: 358 RVDFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVNGPNEHPG-- 415
Query: 404 GAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
AKYI+R DG R+DLR++K LE G KVERHL GD+++FNRQPSLHK S+MGH++
Sbjct: 416 -AKYIVRTDGTRIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQPSLHKESMMGHQV 474
Query: 464 KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL MVP IVSPQ N P+
Sbjct: 475 RVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNSPL 534
Query: 524 MGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNL 583
MGIVQDTL G K+ +RD F+ K+ M+I++W D+DG +PQP IL+PRP WTGKQ+ ++
Sbjct: 535 MGIVQDTLAGTYKLCRRDVFLTKEAVMDIMLWVPDWDGIIPQPAILRPRPRWTGKQIISM 594
Query: 584 IIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
+IP + + W+ ND +L I+ GEL+ G L KK +G ++G +IH+ +
Sbjct: 595 VIPDFVTTHQGGDWNPLNDDALL--------IQSGELMFGLLTKKNVGAASGGIIHICYN 646
Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
E GP A FL Q +VNYWLL N SIGIGDTI D T+E I I++ K V L
Sbjct: 647 EQGPARAMAFLNGCQRVVNYWLLHNGHSIGIGDTIPDPVTIEKIQAHINEQKAEVAELTD 706
Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
A LE PG + E+FE+KV++ LNTAR++AG++ +KSL + NN M +GSKGS
Sbjct: 707 LATTNRLEALPGMNIRETFESKVSKALNTAREKAGTTTEKSLKDINNAVTMSRSGSKGSS 766
Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
INISQMTA VGQQ VEGKRIPFGF RTLPHFTKDD+ PE+RGFVENSYLRGLTP EFFF
Sbjct: 767 INISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDFSPEARGFVENSYLRGLTPSEFFF 826
Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
HAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+ KYDGTVRNSLGD+IQF+YGEDG+D
Sbjct: 827 HAMAGREGLIDTAVKTAETGYIQRRLVKALEDVAAKYDGTVRNSLGDIIQFIYGEDGLDG 886
Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
+ IE Q +D L + +FD ++ ++ EY +++ ++ + D E
Sbjct: 887 MAIEKQKMDHLNISNGKFDGMYKLDLMTATRPRELNALEYGNEIFGDPAVQQLLDEEYDA 946
Query: 944 LEADRYQLATEI--ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
++ADR QL EI D+ LP+N+ R+I NA+K FK+D + SD+ P +V+ V
Sbjct: 947 IKADR-QLIREINYKKKDDNDMQLPLNVARVIENAKKLFKIDDAQRSDLKPQDVIPVVKG 1005
Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
ER+ VVPG+DP+S EA N+++ F LRS A KR+ RL R AF+ VIGE+ESR
Sbjct: 1006 FLERMVVVPGDDPISKEANYNSSILFKAQLRSRLAFKRLAVRERLNRIAFDHVIGEMESR 1065
Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
+ +S V+PGEM+G +AAQSIGEPATQMTLNTFH+ G+S+KNVTLGVPRL+EI+NV+ +IK
Sbjct: 1066 WQRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLGVPRLKEILNVSAEIK 1125
Query: 1122 TPSLSVFLKPGV--NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
TP + V L P + + +E AK ++ +E+T LRSVT TE++YDP+ T I+ED + +
Sbjct: 1126 TPGMVVRLDPKMYPDFKQENAKTLRSLVEHTNLRSVTAMTEIYYDPEIQTTTIDEDADML 1185
Query: 1180 KSYYEMPDE-DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDD 1238
+ +Y +P+E P S WLLR+ L+R+ M+DK L + VA I + DL + +D+
Sbjct: 1186 EGHYLIPEEHQDEPSNQSRWLLRLTLDRQKMLDKNLHIEDVAASIKGAYASDLVVVHSDN 1245
Query: 1239 NADKLILRIR--IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV 1286
NAD+ ++R+R I DE K N ES D LK++E +ML + LRG+
Sbjct: 1246 NADEQVIRMRHVIKGDEEDKDGRNIES---DQILKRLEEHMLDGLTLRGI 1292
Score = 482 (174.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 106/208 (50%), Positives = 139/208 (66%)
Query: 1284 RGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
+G +L V+C + VD+ RT +N L +I+++LGIEA R ALL EL V++FDGSYVN+RHL
Sbjct: 1331 QGTSLRQVLCVDGVDSVRTLTNDLYQIVDLLGIEAARTALLGELTQVLAFDGSYVNHRHL 1390
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
A+L D MTYRG + A+TRHGINR DTG +MRCSFEETV+ILL+AA E D RG++EN+
Sbjct: 1391 ALLVDVMTYRGSIAAVTRHGINRADTGALMRCSFEETVEILLEAAAIGELDDCRGISENV 1450
Query: 1404 MLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSG--TPYHDG-- 1459
MLGQLAP+GTG + L+ +ML+ + + M GL G+T S G TPY G
Sbjct: 1451 MLGQLAPMGTGAFEVLLDPKMLETVVSNN--ARM-GLMPGLTVKGSSAEGAATPYDTGSP 1507
Query: 1460 MMSPGYLFSPNLRLSPVTDAQFSPYVGG 1487
M GY NL ++ T FSP + G
Sbjct: 1508 MGDSGY----NLGMASPTMGNFSPIMSG 1531
Score = 61 (26.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 1306 HLIEIIEVLGIEAVRRALLD-ELRVVISFDGSYVN 1339
H+++ + + GI+ + RA L+ + R+V+ DGS +N
Sbjct: 1282 HMLDGLTLRGIKGIERAFLNKDTRLVVKPDGSLLN 1316
Score = 44 (20.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 1447 ARSPVS--GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSP 1483
A SP+ G+P H SP +SP + AQ SP
Sbjct: 1681 ATSPMYYVGSPQHASPTSPNAHYSPTSPSFQRSPAQASP 1719
Score = 37 (18.1 bits), Expect = 0., Sum P(3) = 0.
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 1448 RSPVSGTPYHDGMMSP-GYLFSP 1469
RSP +P G SP FSP
Sbjct: 1712 RSPAQASPTSPGPYSPTSPSFSP 1734
>UNIPROTKB|I3LJR4 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04992
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GeneTree:ENSGT00700000104490 EMBL:FP565284
Ensembl:ENSSSCT00000029425 Uniprot:I3LJR4
Length = 1010
Score = 2909 (1029.1 bits), Expect = 4.0e-303, P = 4.0e-303
Identities = 572/995 (57%), Positives = 725/995 (72%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S + ++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +
Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
C+TC NM ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130
Query: 126 -KIRN-PKNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPK 177
K + PK RL + D CK K CEGG+E+D V +G+E L K KG GCG QP+
Sbjct: 131 AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190
Query: 178 LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
+ G+++ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+
Sbjct: 191 IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 241
Query: 238 YARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
YARP+WMI+ VL DDLTH+LA I++ N LRR E+NGA AH
Sbjct: 242 YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 288 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+I+E +LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
SARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKY
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKY 418
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
IIRD+G R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 419 IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 479 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 538
Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
QDTL RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP
Sbjct: 539 QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 598
Query: 588 QINLFRTAAWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
IN RT + H D+ D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ +
Sbjct: 599 HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 658
Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
E+G D R F + Q ++N WLL +IGIGD+IAD+KT + I +TI KAK +V +I+
Sbjct: 659 EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 718
Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
+A + LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS
Sbjct: 719 KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 778
Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
INISQ+ A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 779 INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 838
Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+
Sbjct: 839 HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 898
Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
+E Q L +LK F+K FRF+ E + ++ + D+ + +++ + E ++
Sbjct: 899 ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 958
Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQK 978
+ DR L I +GDS LP NL R+IWNAQK
Sbjct: 959 MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQK 992
>CGD|CAL0002215 [details] [associations]
symbol:orf19.3103 species:5476 "Candida albicans" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 CGD:CAL0002215 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AACQ01000086 KO:K03018 eggNOG:COG0086
GO:GO:0032549 PANTHER:PTHR19376:SF15 RefSeq:XP_715412.1
ProteinModelPortal:Q5A0Z3 STRING:Q5A0Z3 GeneID:3642908
KEGG:cal:CaO19.3103 Uniprot:Q5A0Z3
Length = 1448
Score = 1263 (449.7 bits), Expect = 2.6e-207, Sum P(3) = 2.6e-207
Identities = 283/690 (41%), Positives = 406/690 (58%)
Query: 260 DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRAT---- 315
DDLT +L I+ + +R G + + E LQ +A Y +++ +T
Sbjct: 280 DDLTVKLTEIVWTSSMIRAGIVKGISINNLMEQWDYLQLSVAMYINSDSANPALSTGGGG 339
Query: 316 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 375
+S +PI++ C RLK K+GR RGNL GKRVDFS RTVI+PDP + ID++ VP +A LT
Sbjct: 340 AKSSKPIRAFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLT 399
Query: 376 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD--GQRLDLRYLKKSS-DHHLELG 432
YPE T YN ++L++LV GP PG A Y+++ + G+R +LR+ + L++G
Sbjct: 400 YPEKCTRYNKKKLQKLVVNGPDIHPG---ANYVMKQNEPGKR-NLRFGDRVKLAKTLQIG 455
Query: 433 YKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNM 492
VERH+ DGD VLFNRQPSLH++SI+ H KI P+ TFRLN V +PYNADFDGDEMN+
Sbjct: 456 DVVERHIEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNL 515
Query: 493 HVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNI 552
HVPQ+ E RAE + LM V +++P+S P++ QD + G I+ +D+F ++ + +
Sbjct: 516 HVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQL 575
Query: 553 LMWWEDFDGK--VPQPTILKPRPLWTGKQVFNLII-PKQ-----INL-FRTAAWHADNDK 603
L D D + +P PTI KP LWTGKQVF+L+I P + INL + +H K
Sbjct: 576 LSMMSDADIQFDIPPPTIFKPVMLWTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPK-K 634
Query: 604 GI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQW 659
G+ ++ D V I ++LSG + K TLG S+ + I + GP A +
Sbjct: 635 GLPNEMSPNDGFVVIRGSKILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAK 694
Query: 660 LVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMM 719
L +L FSIGI D + + + +A LI LE +PG
Sbjct: 695 LCARFLGNRGFSIGINDVTPADELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEE 754
Query: 720 ESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 779
++ E K+ +L+ R+E G + L N M T GSKGS +N+SQM A VGQQ +
Sbjct: 755 QTLEAKIGGLLSKVREEVGDVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIIS 814
Query: 780 GKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 839
G R+P GF DR+LPHFTK+ P+S+GFV NS+ GLTP EF FHA+ GREGL+DTAVKT
Sbjct: 815 GHRVPDGFQDRSLPHFTKNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKT 874
Query: 840 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKS 899
+ETGY+ RRL+K++ED+ +YD TVRNS ++QF YG DG+D +E + +
Sbjct: 875 AETGYMSRRLMKSLEDLSSQYDNTVRNSSNGIVQFTYGGDGLDPYDMEGDA-KPVNFNR- 932
Query: 900 EFDKAFR--FEMDEENWNPNYMLQEYIDDL 927
++D A+ + +D+ + P Y ++E +D +
Sbjct: 933 QWDHAYNLTYNVDDASLLP-YQIEELVDSV 961
Score = 487 (176.5 bits), Expect = 2.6e-207, Sum P(3) = 2.6e-207
Identities = 136/400 (34%), Positives = 215/400 (53%)
Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
+++ +A + + + ++ ++ V PG +G + AQSIGEP TQMTL TFH+AGV++ NVT
Sbjct: 1053 KISSKAVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVT 1112
Query: 1105 LGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNV-QCALEYTTLRSVTEATEVWY 1163
LGVPR++EIIN +K I TP ++ L VN E A V + +E T L V E Y
Sbjct: 1113 LGVPRIKEIINASKVISTPIINAVL---VNDDDEIAARVAKGRIEKTLLEDVAFYIEDVY 1169
Query: 1164 DPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEK 1222
+ I+ D+E + K E+ E+IA + L+I + ++ V K V
Sbjct: 1170 KDNLAYLSIKIDLETIDKLQLELNLENIAVAIANAPKLKIAQS-DVSVTGK-DRINVLVN 1227
Query: 1223 INQEFDDDLTCIFNDDNADKLILRIRIMNDEAP----KGELNDESAEDDVFLKKIESNML 1278
I + + L + NA L R++ + P KG N A + I+ +
Sbjct: 1228 IKETKTESLRNTVDPKNA--LFFRMQYLKRALPGVCIKGLPNIFRA-----VINIKDDGK 1280
Query: 1279 TEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYV 1338
E+ + G L VM E + +TT+NH++E+ ++LGIEA R +++ E+ +S G V
Sbjct: 1281 KELLVEGYGLKDVMNTEGIVGTKTTTNHVLEVNQILGIEAARGSIIKEIDYTMSNHGMSV 1340
Query: 1339 NYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRG 1398
+ RH+ +L D MTY+G ++ ITR G+++ + SFE+T D L DAA F ++D + G
Sbjct: 1341 DPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKNDKIEG 1400
Query: 1399 VTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME 1438
V+E I+LGQ IGTG L + K A++ + P+ E
Sbjct: 1401 VSECIILGQTMSIGTGSFKLVKSSNCEKKALKKK-PTLFE 1439
Score = 294 (108.6 bits), Expect = 2.6e-207, Sum P(3) = 2.6e-207
Identities = 79/256 (30%), Positives = 138/256 (53%)
Query: 15 VRMVQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCTA 71
++ ++FG LS +I S V+I+ + E+G+ PK G D ++G +C TC
Sbjct: 13 IKGLEFGALSAKDIVAQSEVEIQTRDLYDLEKGRVPKEHGALDTKMGISSNAQECSTCHG 72
Query: 72 NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALK---I 127
N+A C GHFGH+ LA P+FH+G+ K+++S+++ +C +C+ +L DE + + L+ I
Sbjct: 73 NLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLDEQSKRQYLNDLRKPHI 132
Query: 128 RNPKNR--LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKM 185
N + +KKI++ CK + +C + I+ G +KK G G K+ + +
Sbjct: 133 DNLRRMKIIKKIIEQCKKQRRCLKCNHIN-----GV--VKKAASGAGPAALKIVHDTFRW 185
Query: 186 IAEYKAQRKKNDDQE--QL----PEPVER--KQT---LTAERVLGVLKRISDEDCQLLGL 234
I + + K D+E Q+ PE +E+ K+ L + L + K+I+ +DC+L GL
Sbjct: 186 IGKKETLEKTIWDEELDQVFIRNPE-LEKFAKRIHDDLNPLKTLNLFKQITPQDCELFGL 244
Query: 235 NP-KYARPDWMILQVL 249
+P K RP+ I + L
Sbjct: 245 DPAKGGRPEMYIWRYL 260
Score = 43 (20.2 bits), Expect = 5.3e-20, Sum P(2) = 5.3e-20
Identities = 23/81 (28%), Positives = 34/81 (41%)
Query: 1055 IGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLG--VP---R 1109
+G++ R L SL AP M C + S TLN V + + G VP +
Sbjct: 772 VGDVCIRELDSLNAPLIMATCGSKGS--------TLNVSQMVAVVGQQIISGHRVPDGFQ 823
Query: 1110 LREIINVAKKIKTPSLSVFLK 1130
R + + K KTP F++
Sbjct: 824 DRSLPHFTKNSKTPQSKGFVR 844
Score = 40 (19.1 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 1255 PKGELNDESAEDDVFLKKIE----SNMLTEMALRGVNLLAVM 1292
P ++ +S EDD+ +K E S+M+ ++G+++ +M
Sbjct: 269 PSVMMDSQSNEDDLTVKLTEIVWTSSMIRAGIVKGISINNLM 310
>ASPGD|ASPL0000047704 [details] [associations]
symbol:AN10316 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EnsemblFungi:CADANIAT00009238 Uniprot:C8VPJ2
Length = 1445
Score = 1298 (462.0 bits), Expect = 4.3e-205, Sum P(3) = 4.3e-205
Identities = 280/663 (42%), Positives = 396/663 (59%)
Query: 260 DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
DDLT +L I++ N NL+ GAP I E +Q IA Y ++++PG +A G
Sbjct: 292 DDLTAKLGDIVQSNINLKNALLKGAPVQTIMECWDYMQLQIAVYINSDVPGLNKADL--G 349
Query: 320 RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
+PI+ RLK K+GR RGNL GKRVDFS RTVI+PDP + +D++ VP +A N+TYPE
Sbjct: 350 KPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRVDEVAVPELVAKNMTYPEV 409
Query: 380 VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ-RLDLRY--LKKSSDHHLELGYKVE 436
V YN E+L++ V G PG A YII+ + L+Y LK +D L+ G VE
Sbjct: 410 VNRYNKEKLQQCVRNGQKKWPG---ANYIIKKGNPLKTMLKYGNLKFIADQ-LQEGDIVE 465
Query: 437 RHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 496
RH+ DGD VLFNRQPSLHK+SI+ H K+ P+ TFRLN V +PYNADFDGDEMN+HVPQ
Sbjct: 466 RHIEDGDIVLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQ 525
Query: 497 SFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW 556
+ E RAE +ELM V + +P++ P++G +QD + ++ +D F ++ F I ++
Sbjct: 526 TEEARAEAMELMGVKNNLATPKNGEPIIGAIQDFISAAYLLSSKDNFFDRRSFTQICLYM 585
Query: 557 ----EDFDGKVPQPTILKPRPLWTGKQVFNLII------PKQINLFRTAAWHAD---NDK 603
FD +P P + KP+ LWTGKQVFN+++ P +NL N
Sbjct: 586 LGPQTRFD--LPPPAVFKPQMLWTGKQVFNILMRPNKDDPVLVNLDAACKQFKPPKGNQP 643
Query: 604 GILTAGDTLVRIEKGELLSGTLCKKTLGTST-GSLIHVIWEEVGPDAARKFLGHTQWLVN 662
L D+ + + E++ G + K T+G+ ++ +++ + GP AA + + L
Sbjct: 644 RDLDPNDSWLVVRNSEVMCGVMDKSTVGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLSA 703
Query: 663 YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
W FSIGI D + +++ ND + A +I + + +LE PG +++
Sbjct: 704 RWFSNMGFSIGITDVYPSDRLVQSKNDLVEAAYAQCDEVIAKYKAGTLEKYPGCDELQTM 763
Query: 723 ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
EN+++ +L+ R +AG LS+ N+ M T+GSKGS IN+SQM A VGQQ + G+R
Sbjct: 764 ENQLSGILSKVRQQAGDECIAQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQR 823
Query: 783 IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
+ GF DRTLPHF K+ P S+GFV NS+ GL P EF FHAM GREGL+DTAVKT+ET
Sbjct: 824 VQDGFQDRTLPHFPKNARQPPSKGFVRNSFFSGLLPYEFIFHAMSGREGLVDTAVKTAET 883
Query: 843 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
GY+ RRL+K++ED+ YD TVRNS ++QF YG+D +D V +E K K FD
Sbjct: 884 GYMSRRLMKSLEDLSTGYDDTVRNSSQGIVQFQYGDDKLDPVDMEG------KAKPVHFD 937
Query: 903 KAF 905
+ F
Sbjct: 938 RTF 940
Score = 412 (150.1 bits), Expect = 4.3e-205, Sum P(3) = 4.3e-205
Identities = 121/378 (32%), Positives = 186/378 (49%)
Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
+LT I E ++ ++ V PG +G V AQSIGEP TQMTL TFH+AGV+ ++T
Sbjct: 1042 KLTERTLRTFIAECLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSIT 1101
Query: 1105 LGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCALEYTTLRSVTE-ATEVW 1162
GVPR++EIIN +K+I TP +S L N R AK +E T LR + E W
Sbjct: 1102 QGVPRIKEIINASKEISTPVISCELVEKRNIVAARMAKG---RIEKTFLRDIIHYVRETW 1158
Query: 1163 YDPDPMGTI-IEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMV-DKKLSMAAVA 1220
+ T+ I D S E+ D+ KI IE +R D KL
Sbjct: 1159 TGKEAYLTVKINWDTI---SALEL---DLTVGKIRQ---AIENHRRFKSEDLKLRSTRSH 1209
Query: 1221 EKINQEFD----DDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESN 1276
I+ + D + L+ + LR++ + P ++ + ++ + +
Sbjct: 1210 IHIHIDLDPASKEKLSKTEIAATSSDPFLRLKALKRLLPDIQVLGHPQANRAIIRTDDKS 1269
Query: 1277 MLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336
+ + G L M +D RT SN+++E EVLGIEA R ++ E+ V+ D
Sbjct: 1270 DTNTLLVEGYGLRQCMNTVGIDGLRTRSNNVMETREVLGIEAARSTIIQEISEVMK-DMD 1328
Query: 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYL 1396
++ RH+ +L D MTY+G ++ ITR G+ + + SFE+T D L DA +D +
Sbjct: 1329 -IDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLI 1387
Query: 1397 RGVTENIMLGQLAPIGTG 1414
GV+E I++G+ +GTG
Sbjct: 1388 EGVSECIIMGKTVSLGTG 1405
Score = 313 (115.2 bits), Expect = 4.3e-205, Sum P(3) = 4.3e-205
Identities = 77/251 (30%), Positives = 129/251 (51%)
Query: 15 VRMVQFGILSPDEIRQMSVVQIEHGE--TTERGKP-KPGGLSDPRLGTIDRKMKCETCTA 71
++ ++FG+LS D+I VV++ + E + P G D R+G ++ C+TC
Sbjct: 24 IKELKFGVLSNDDIVSQGVVEVSDRKFFNLENDRSIVPNGPLDARMGISNKTSTCQTCGG 83
Query: 72 NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIRNP 130
+ C GHFGH+ L P FH+G+ K V+SI++ +C CS IL E + + F + ++R P
Sbjct: 84 ALQVCNGHFGHVRLVLPAFHVGYFKRVISILQEICKECSHILLPEAERRAFLR--EMRRP 141
Query: 131 K----NRL---KKILDACKNKTKCEGGDEID-VPGQDGEEPLK----KNKGGCGAQQPKL 178
+ R+ K++ D C+ CE ++ V + G LK K + + K
Sbjct: 142 RLDNLRRMQIAKRVNDRCRKTRTCENCGAVNGVVKKTGTSSLKITHDKFRAFNASTSAKK 201
Query: 179 TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
K++ + + ++ + E + + L A RVL + KRISD DC+LLGL+PK
Sbjct: 202 IPPPSKIVFDRSLEEARSSNPEVEKHHKKAQDDLNALRVLNLFKRISDSDCELLGLDPKE 261
Query: 239 ARPDWMILQVL 249
ARP+ + Q +
Sbjct: 262 ARPEMFLWQFI 272
Score = 37 (18.1 bits), Expect = 2.1e-21, Sum P(2) = 2.1e-21
Identities = 25/87 (28%), Positives = 36/87 (41%)
Query: 572 RPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLG 631
R WTGK+ + + +IN +A D LT G IE K
Sbjct: 1155 RETWTGKEAYLTV---KINWDTISALELD-----LTVGKIRQAIENHRRFKSEDLKLR-- 1204
Query: 632 TSTGSLIHVIWEEVGPDAARKFLGHTQ 658
ST S IH I ++ P A+++ L T+
Sbjct: 1205 -STRSHIH-IHIDLDP-ASKEKLSKTE 1228
>SGD|S000005642 [details] [associations]
symbol:RPO31 "RNA polymerase III largest subunit C160"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 SGD:S000005642
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:X90518
EMBL:X94335 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 KO:K03018 OrthoDB:EOG4X3M8C
eggNOG:COG0086 GO:GO:0032549 Reactome:REACT_87991 GO:GO:0042797
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222974
PANTHER:PTHR19376:SF15 EMBL:X03129 EMBL:Z75024 PIR:A00694
RefSeq:NP_014759.1 ProteinModelPortal:P04051 SMR:P04051
DIP:DIP-612N IntAct:P04051 MINT:MINT-557787 STRING:P04051
PaxDb:P04051 PeptideAtlas:P04051 EnsemblFungi:YOR116C GeneID:854283
KEGG:sce:YOR116C CYGD:YOR116c OMA:CINELDN NextBio:976257
Genevestigator:P04051 GermOnline:YOR116C Uniprot:P04051
Length = 1460
Score = 1219 (434.2 bits), Expect = 1.9e-202, Sum P(3) = 1.9e-202
Identities = 268/639 (41%), Positives = 374/639 (58%)
Query: 308 LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 367
LPG + +PI+ C RLK K+GR RGNL GKRVDFS RTVI+PDP ++ID++ VP
Sbjct: 337 LPGSSNGGGKV-KPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVP 395
Query: 368 WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII-RDDGQRLDLRYLKKSS- 425
+A LTYPE VT YN +L+EL+ GP+ PG A Y++ R++ R +LRY +
Sbjct: 396 DRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPG---ANYLLKRNEDARRNLRYGDRMKL 452
Query: 426 DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
+L++G VERHL DGD VLFNRQPSLH++SI+ H KI P+ TFRLN V +PYNADF
Sbjct: 453 AKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADF 512
Query: 486 DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
DGDEMN+HVPQ+ E RAE + LM V +++P+S P++ QD + G I+ +D+F +
Sbjct: 513 DGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYD 572
Query: 546 KDVFMNILMWWED----FDGKVPQPTILKPRPLWTGKQVFNLII------PKQINL-FRT 594
+ +L D FD +P P I+KP LWTGKQVF+L+I P INL +
Sbjct: 573 RATLTQLLSMMSDGIEHFD--IPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKN 630
Query: 595 AAWHADNDKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAA 650
+ K + ++ D V I ++LSG + K LG S+ + I + GP A
Sbjct: 631 KVFVPPKSKSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEA 690
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
+ L +L FSIGI D + + + A + LI L
Sbjct: 691 ANAMNRMAKLCARFLGNRGFSIGINDVTPADDLKQKKEELVEIAYHKCDELITLFNKGEL 750
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
E +PG ++ E K+ +L+ R+E G L N M T GSKGS +N+SQM
Sbjct: 751 ETQPGCNEEQTLEAKIGGLLSKVREEVGDVCINELDNWNAPLIMATCGSKGSTLNVSQMV 810
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
A VGQQ + G R+P GF DR+LPHF K+ P+S+GFV NS+ GL+P EF FHA+ GRE
Sbjct: 811 AVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGRE 870
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GL+DTAVKT+ETGY+ RRL+K++ED+ +YD TVR S ++QF YG DG+D + +E
Sbjct: 871 GLVDTAVKTAETGYMSRRLMKSLEDLSCQYDNTVRTSANGIVQFTYGGDGLDPLEMEGNA 930
Query: 891 LDSLKMKKSEFDKAFR--FEMDEENWNPNYMLQEYIDDL 927
+ +S +D A+ F ++ P Y + E +++
Sbjct: 931 -QPVNFNRS-WDHAYNITFNNQDKGLLP-YAIMETANEI 966
Score = 766 (274.7 bits), Expect = 7.5e-118, Sum P(2) = 7.5e-118
Identities = 201/538 (37%), Positives = 284/538 (52%)
Query: 134 LKKILDACKNKTKCE-----GGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAE 188
LKKILD CK + +C G G LK K E + E
Sbjct: 141 LKKILDQCKKQRRCLHCGALNGVVKKAAAGAGSAALKIIHDTFRWVGKKSAPEKDIWVGE 200
Query: 189 YKAQRKKNDDQEQLPEPVER-KQTLTAERVLGVLKRISDEDCQLLGLNPKY--ARPD--- 242
+K N + E+ V+R L + L + K+I DC+LLG++ RP+
Sbjct: 201 WKEVLAHNPELERY---VKRCMDDLNPLKTLNLFKQIKSADCELLGIDATVPSGRPETYI 257
Query: 243 WMILQV--------LXXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
W L + DDLT +L I+ + ++ G + + E
Sbjct: 258 WRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLDKGISINNMMEHWD 317
Query: 295 LLQFHIATYFDNEL--PGQ-PRATQRSGR--PIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
LQ +A Y +++ P P ++ G+ PI+ C RLK K+GR RGNL GKRVDFS
Sbjct: 318 YLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 377
Query: 350 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
RTVI+PDP ++ID++ VP +A LTYPE VT YN +L+EL+ GP+ PG A Y++
Sbjct: 378 RTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPG---ANYLL 434
Query: 410 -RDDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
R++ R +LRY + +L++G VERHL DGD VLFNRQPSLH++SI+ H KI P
Sbjct: 435 KRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIRP 494
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+ TFRLN V +PYNADFDGDEMN+HVPQ+ E RAE + LM V +++P+S P++
Sbjct: 495 WRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAAT 554
Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWED----FDGKVPQPTILKPRPLWTGKQVFNL 583
QD + G I+ +D+F ++ +L D FD +P P I+KP LWTGKQVF+L
Sbjct: 555 QDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHFD--IPPPAIMKPYYLWTGKQVFSL 612
Query: 584 II------PKQINL-FRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGTLCKKTLG 631
+I P INL + + K + ++ D V I ++LSG + K LG
Sbjct: 613 LIKPNHNSPVVINLDAKNKVFVPPKSKSLPNEMSQNDGFVIIRGSQILSGVMDKSVLG 670
Score = 486 (176.1 bits), Expect = 1.9e-202, Sum P(3) = 1.9e-202
Identities = 129/362 (35%), Positives = 199/362 (54%)
Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
++ ++ + PG IG + AQSIGEP TQMTL TFH+AGV++ NVTLGVPR++EIIN +K I
Sbjct: 1077 KYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVI 1136
Query: 1121 KTPSLSVFLKPGVNSTKERAKNV-QCALEYTTLRSVTEATEVWYDPDPMGTI-IEEDVEF 1178
TP ++ L VN ERA V + +E T L V + Y D + I + D+
Sbjct: 1137 STPIINAVL---VNDNDERAARVVKGRVEKTLLSDVAFYVQDVYK-DNLSFIQVRIDLGT 1192
Query: 1179 V-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDK-KLSMAAVAEKINQEFDDDLTCIFN 1236
+ K E+ EDIA L+I+ + ++ K ++++ E + ++
Sbjct: 1193 IDKLQLELTIEDIAVAITRASKLKIQASDVNIIGKDRIAINVFPEGYKAK---SISTSAK 1249
Query: 1237 DDNADKLILRI----RIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVM 1292
+ + + + R+ R + D KG L D S + I + E+ + G L VM
Sbjct: 1250 EPSENDVFYRMQQLRRALPDVVVKG-LPDISRA----VINIRDDGKRELLVEGYGLRDVM 1304
Query: 1293 CHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTY 1352
C + V RTT+NH++E+ VLGIEA R +++ E+ +S G V+ RH+ +L D MTY
Sbjct: 1305 CTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTY 1364
Query: 1353 RGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIG 1412
+G ++ ITR G+++ + SFE+T D L DAA + + D + GV+E I+LGQ IG
Sbjct: 1365 KGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIG 1424
Query: 1413 TG 1414
TG
Sbjct: 1425 TG 1426
Score = 293 (108.2 bits), Expect = 1.9e-202, Sum P(3) = 1.9e-202
Identities = 81/257 (31%), Positives = 129/257 (50%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTERGK---PKPGGLSDPRLGTIDRKMKCETCT 70
+++ ++F LS +I S V++ + + K PK G DP++G ++C TC
Sbjct: 12 RIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSLECATCH 71
Query: 71 ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALK--- 126
N+A C GHFGHL+LA P+FHIG+ K + I++ +C NCS IL E D + F L+
Sbjct: 72 GNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKRQFLHELRRPG 131
Query: 127 IRNPKNR--LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
+ N + LKKILD CK + +C + +G +KK G G+ K+ + +
Sbjct: 132 VDNLRRMGILKKILDQCKKQRRC-----LHCGALNGV--VKKAAAGAGSAALKIIHDTFR 184
Query: 185 MIAEYKAQRKK---NDDQEQL---PEP---VER-KQTLTAERVLGVLKRISDEDCQLLGL 234
+ + A K + +E L PE V+R L + L + K+I DC+LLG+
Sbjct: 185 WVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGI 244
Query: 235 NPKY--ARPDWMILQVL 249
+ RP+ I + L
Sbjct: 245 DATVPSGRPETYIWRYL 261
>DICTYBASE|DDB_G0277199 [details] [associations]
symbol:rpc1 "RNA polymerase III, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0277199 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000019 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
KO:K03018 eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:XP_642724.1 ProteinModelPortal:Q86AQ5
STRING:Q86AQ5 EnsemblProtists:DDB0216293 GeneID:8620917
KEGG:ddi:DDB_G0277199 ProtClustDB:CLSZ2729139 Uniprot:Q86AQ5
Length = 1450
Score = 1954 (692.9 bits), Expect = 6.4e-202, P = 6.4e-202
Identities = 496/1453 (34%), Positives = 774/1453 (53%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKMKCETCTA 71
K+ +QFG+LS D+I ++S VQI + E + + KP P G+ D +LGT D++ C TC
Sbjct: 13 KIGHIQFGLLSEDDIVRLSHVQIVNRELFDLVKRKPTPYGVLDNKLGTSDKQAMCTTCGL 72
Query: 72 NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPK 131
++ +C GHFG+++L P+FHIG++K +++I++ +C +CS IL +E+ ++ K+RN K
Sbjct: 73 SIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKKQY-YLRKMRNKK 131
Query: 132 -------NRLKKILDACKNKTKC-EGGDEIDVPGQDGEEPL--KKNKGGCGAQQPKLTI- 180
+ LKKI C+ +C + G + + G + +K KG + Q +
Sbjct: 132 MDNLQRKSLLKKIFLECRKTKECLKCGSTNGMIKKSGAFKIIHEKYKGKTESLQDYYALY 191
Query: 181 -EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
+ +K E K+ KK Q+ L P L A L + K+IS +D +++ ++P
Sbjct: 192 DDAIKYNPEMKSHIKKA--QDDL-NP------LVA---LNLFKKISYQDIEIMNMDPVIG 239
Query: 240 RPDWMILQVLXXXXXXXXXS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
RP+ +IL + S DDLT +L+ I+ NE++R + I
Sbjct: 240 RPERLILTYMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEILHINEHIRSNVDRAEMSAI 299
Query: 289 ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
+ ++ LQ A Y ++++PG P + + ++ + RLK K GR RGNL GKRVDFS
Sbjct: 300 MEDW-DYLQASCAIYINSDVPGLP-LQMKPTKAVRGLSQRLKGKTGRFRGNLSGKRVDFS 357
Query: 349 ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
RTVI+PDP +NID++ VP IAL +TYPE VT YNIERL++ V GP PG A YI
Sbjct: 358 GRTVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPG---ANYI 414
Query: 409 IRDDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
I DG + L++ + L++G VERH+ DGD +LFNRQPSLHK+SIM H+ ++MP
Sbjct: 415 IYADGVKKWLKFGNREKFAAELKIGDIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVMP 474
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+ T R N V +PYNADFDGDEMN+H+PQ+ E RAE LM V +++P++ P++
Sbjct: 475 WRTLRFNECVCTPYNADFDGDEMNIHLPQTEEARAEATILMGVTNNLITPRNGEPLVAAT 534
Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV--PQPTILKPRPLWTGKQVFNLII 585
QD L I++RD F E+ F + + D + + P P ILKP LWTGKQ+F +++
Sbjct: 535 QDFLTASYLISRRDAFYERYRFALMCTHFADANEHIDLPPPAILKPVELWTGKQIFEVLL 594
Query: 586 PKQINLFRTAAWHADN---DKGI-LTAGDTLVRIEKGELLSGTLCKKTLGTST-GSLIHV 640
+ + + K + + D V EL+ G++ K +G SL H+
Sbjct: 595 RPSVKSHVLCNFETRSRTYSKNLYMCPKDGYVYFRNSELMCGSIDKSIIGGGNKNSLFHI 654
Query: 641 IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETIN-DTISKAKNNVK 699
+ + P A + L +L FSIGI D I A+ ++ + I A
Sbjct: 655 LMRDFSPTIAANCMTRLAKLCARFLGDQGFSIGIPD-IKPAEDLDRKKREIIETAYKKCA 713
Query: 700 NLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGS 759
+K + SL+ G +M ++FE K+NQ L+ RD+ G L N+ M GS
Sbjct: 714 VFLKDYESGSLQLSSGCSMEQTFEAKMNQTLSQIRDDCGKLCVNDLPNYNSPLIMGLCGS 773
Query: 760 KGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQ 819
KGS INI+QM CVGQQ V G RIP GF +RT PHF P+S+GFV NS+ G+ P
Sbjct: 774 KGSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPHFKHFAKNPKSKGFVSNSFYTGMIPT 833
Query: 820 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGED 879
EFFFH MGGREGL+DTAVKT+ETGY+QRRL+KA+ED+ YD TVR+S+G ++QF+YG+D
Sbjct: 834 EFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRDSIGGIVQFIYGDD 893
Query: 880 GMDSVWIESQT--LDSLK-MKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDV 936
G+D +E++ +D L+ M + + R E + + + +++ ID K + D+
Sbjct: 894 GLDPAGMEAKDRPVDFLRAMMSVKSTRQCRNEPEMKPFEIRKLVESIIDSSK-FEACTDL 952
Query: 937 FDAEVQKL----EADRYQLATEIATSGD---SSWPLPVNLKRLIWNAQKTFKVDPRRPSD 989
F E++ E + + I+ SS+ L N +I + +
Sbjct: 953 FKNEIRVFFNGNEKTKGYIQELISLRKQFKLSSFDLNDNEDEIIIEDNSPMDISTTTTTT 1012
Query: 990 M-----HPMEVVEAVDKLQERLKVVPGEDPLSVEA-QKNATLFFNILLRSTFASKRVLKE 1043
+ +++ ++ D + E +K LL FA++ V+ +
Sbjct: 1013 TTTTTNNAVKITNITTDIEMNESNKEENDKIEKERIEKEKESKRLKLLGERFANEHVVNQ 1072
Query: 1044 -HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKN 1102
HR+T+ E + ++ ++ + PG +G + AQSIGEP TQMTL TFH+AGV++ N
Sbjct: 1073 IHRITKTQIELFLDICLDKYSRARIEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMN 1132
Query: 1103 VTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVW 1162
VTLGVPR++EIIN AK I TP ++ L + R V +E TTL V AT +
Sbjct: 1133 VTLGVPRIKEIINAAKNISTPIITASLNCDYDIRSARI--VAGRIEKTTLGHV--ATHIK 1188
Query: 1163 YDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEK 1222
G + ++ K++ + +I + IS + + K L + E+
Sbjct: 1189 EVVKRAGCYLSIKID--KNFVDSLQLEINSKTIS---------QSIASTKGLKLKP--EQ 1235
Query: 1223 INQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKI-ESNMLTEM 1281
I D L + + + + ++ + + P + + V + K+ E ++
Sbjct: 1236 ITTNGDYKLRIVPPANIREGSLYYLQFLKNNLPAVIVKGIPTVNRVVISKVDEKQERYQL 1295
Query: 1282 ALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYR 1341
+ G +L AVM + TTSNH++E LGIE R ++ E+ ++++ G ++ R
Sbjct: 1296 LVEGYDLRAVMATPGIKGTHTTSNHIMECENTLGIETARNTIMSEIDMIMTSHGMSIDIR 1355
Query: 1342 HLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTE 1401
H+ +L D M+++G ++ ITR GI + +M SFE+T D L DAAV D + GV+E
Sbjct: 1356 HVMLLADLMSFKGEILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHHRQDDIVGVSE 1415
Query: 1402 NIMLGQLAPIGTG 1414
I++G + P+GTG
Sbjct: 1416 CIIMGVVIPLGTG 1428
>WB|WBGene00004411 [details] [associations]
symbol:rpc-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0040035 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 eggNOG:COG0086
HSSP:P04050 GO:GO:0032549 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:FO080771 PIR:T34157 RefSeq:NP_501127.2
ProteinModelPortal:Q18566 SMR:Q18566 STRING:Q18566 PaxDb:Q18566
EnsemblMetazoa:C42D4.8 GeneID:177491 KEGG:cel:CELE_C42D4.8
UCSC:C42D4.8 CTD:177491 WormBase:C42D4.8 InParanoid:Q18566
NextBio:897062 Uniprot:Q18566
Length = 1400
Score = 1333 (474.3 bits), Expect = 1.9e-198, Sum P(3) = 1.9e-198
Identities = 282/643 (43%), Positives = 399/643 (62%)
Query: 260 DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
DD+T +L I+ N+ L++ +R+GAP+ + E + LQ A Y ++E+ G P Q
Sbjct: 273 DDVTMKLMEIMLTNDVLKKHKRDGAPSKTLFETWEHLQIQCALYINSEMSGLPPDMQPK- 331
Query: 320 RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
R +++ RLK K+GR RGNL GKRVDFS RTVI+PDP + IDQ+GVP +A+ LT+PE
Sbjct: 332 RAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRTVISPDPNLRIDQVGVPIHVAMTLTFPEI 391
Query: 380 VTPYNIERLKELVEYGPHPPPGKTGAKYII-RDDGQRLDLRYLKKSS-DHHLELGYKVER 437
V NIE++++LV G PG A Y++ + G + L+Y K+ +L +G +ER
Sbjct: 392 VNASNIEKMRQLVINGSDVHPG---ANYLVEKKTGNKKLLKYGKRDELAKNLRMGDTIER 448
Query: 438 HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
HL+D D VLFNRQPSLHK+SIM HR K+MP TFR N +PYNADFDGDEMN+H+PQ+
Sbjct: 449 HLDDNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQT 508
Query: 498 FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 557
+E +AE ELM V +++P+S P++ +QD + G +T +DTF+ +
Sbjct: 509 YEAKAEASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALI 568
Query: 558 DFDGK------VPQPTILKPRPLWTGKQVFNLII-PKQ---INLFRTAAWHADNDKGILT 607
D K +P P I +P LWTGKQ+ LII P + ++L TA + L
Sbjct: 569 DASAKKQTKIRIPPPAIRRPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELC 628
Query: 608 AGDTLVRIEKGELLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 666
+ D+ V I LL+G L K LG+S+ ++ +++ + G DAA + + +L
Sbjct: 629 SKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLS 688
Query: 667 QNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKV 726
FSIGIGD + + + + IK+ ++ L+ +PG T E+ E+ +
Sbjct: 689 NRGFSIGIGDVRPSEQLLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESII 748
Query: 727 NQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 786
+ L+T RD AG ++LS+ N M GSKGSFINISQM ACVGQQ + G R P G
Sbjct: 749 LRELSTIRDHAGQVCLRNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDG 808
Query: 787 FVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 846
F +R+LPHF + PE++GFV NS+ GLTP EFFFH MGGREGL+DTAVKT+ETGY+Q
Sbjct: 809 FEERSLPHFERKKKTPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQ 868
Query: 847 RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
RRLVK +ED+ YDGTVR+S+GDVI+F++GEDG+D +E++
Sbjct: 869 RRLVKCLEDLCASYDGTVRSSVGDVIEFVFGEDGLDPAMMEAK 911
Score = 427 (155.4 bits), Expect = 1.9e-198, Sum P(3) = 1.9e-198
Identities = 109/360 (30%), Positives = 195/360 (54%)
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
+++ PG +G +AA SIGEP+TQMTL TFH+AGV++ N+T GVPR++EIIN K I TP
Sbjct: 1037 RAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTP 1096
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
++ L + + A+ V+ +E TTL + + E Y PD +++ + + ++
Sbjct: 1097 IITAALLDPYDESL--ARRVKARIEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIR--- 1151
Query: 1184 EMPDEDIAPEKISPWLLRIELNREM----MVDKKLSMAAVAEKINQEFDDDLTC-IFNDD 1238
+ ++ E IS + ++ +M +V +M A+ + +T I
Sbjct: 1152 -LLQLEVCMESISYAIATSKVCPQMRGCKIVAHGKTMMAIRPPSTSKLSKTMTMQILKYS 1210
Query: 1239 NADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVD 1298
A+ ++ I +N + ++ + + D + ++L E G + +V+ VD
Sbjct: 1211 LANVVVKGIPSVN----RCVIHADEKKGDFY------SLLVE----GTDFRSVLSSVGVD 1256
Query: 1299 ARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMA 1358
R+T N+ + + +VLGIEA R +++E+ + G ++ RH+ +L D MTYRG ++
Sbjct: 1257 PRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVMLLADVMTYRGEVLG 1316
Query: 1359 ITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSL 1418
ITR+G+ + ++ SFE+T+D L +AA F++ D + GV+E I++G +GTG L
Sbjct: 1317 ITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKL 1376
Score = 200 (75.5 bits), Expect = 1.9e-198, Sum P(3) = 1.9e-198
Identities = 49/146 (33%), Positives = 78/146 (53%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPG--GLSDPRLGTIDRKMKCETC 69
KV V+F + +RQ + V I + + E GK +P G DP++G + C TC
Sbjct: 14 KVVGVKFAPGDCEFMRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVSTKTGTCSTC 73
Query: 70 TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIR 128
+ +C GHFG+ +L P+FHIGF K + +++ +C NCS IL + H+ F + ++
Sbjct: 74 GLGLTDCVGHFGYFDLDVPVFHIGFFKLTIQLLQCICKNCSSILLTPEQHRVFSR--QVM 131
Query: 129 NP------KNRL-KKILDACKNKTKC 147
NP + L K+I+ ACK + C
Sbjct: 132 NPNLDYLHRKALHKRIVAACKKGSTC 157
Score = 39 (18.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 1416 CSLYLNDEM 1424
C+LY+N EM
Sbjct: 313 CALYINSEM 321
>GENEDB_PFALCIPARUM|PF13_0150 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase 3
largest subunit" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 986 (352.1 bits), Expect = 1.3e-181, Sum P(6) = 1.3e-181
Identities = 215/502 (42%), Positives = 301/502 (59%)
Query: 415 RLDLRYLKKSSD-HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
++ L+Y K+ +L +G VERH+ DGD VLFNRQPSLH+MSIM H+ KIM + TFR
Sbjct: 541 KISLKYANKNHVIQNLNIGDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDFKTFRF 600
Query: 474 NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
N V SPYNADFDGDEMN+HVPQ+ E RAE L LM V +++P++ ++ + QD L
Sbjct: 601 NECVCSPYNADFDGDEMNLHVPQTEEARAEALYLMNVKHNLITPKNGEVIIALTQDFLSA 660
Query: 534 CRKITKRDTFIEKDVFMNILMWWEDFDG--KVPQPTILKPRPLWTGKQVFNLII-P-KQI 589
IT +DTF+++D F + ++ D ++P P ILKP+ LWTGKQ+ +++I P K+
Sbjct: 661 SYIITNKDTFLDRDTFCLLCSYFSDASLYIELPIPAILKPKELWTGKQLISVLIKPNKKE 720
Query: 590 NL---FRTAAWHADNDKGILT---AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
N F N G L D+ V K EL+ G+L KK LG+S L + +
Sbjct: 721 NTIINFEIQEREYSNKFGDLKHLCLNDSYVCFYKSELICGSLGKKVLGSSKYGLFYYLIH 780
Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
A K + L + + +IGI D E D + K V N I
Sbjct: 781 HNSSHIALKIMNRLSKLTSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLKGYEKVNNEII 840
Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
+K ++ +PG T+ E+ E KV +L+ R++AG + + L N M +G+KG+
Sbjct: 841 LYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCNQYLHYLNKPLIMFNSGAKGAL 900
Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
INI+QM ACVGQQNV G+RI GF++RTLPHF ESRGFV+NS+ GL+P EFFF
Sbjct: 901 INIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFFF 960
Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
H M GREGL+DTAVKT+ETGY+QRRL+KA+ED+ + YD +VR+ ++QF+YG+D ++
Sbjct: 961 HTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIVQFIYGDDALNP 1020
Query: 884 VWIESQTLDSLKMKKSEFDKAF 905
+I D+ +FDK F
Sbjct: 1021 SYI-----DNNNTYLDQFDKVF 1037
Score = 501 (181.4 bits), Expect = 1.3e-181, Sum P(6) = 1.3e-181
Identities = 144/435 (33%), Positives = 224/435 (51%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLG 58
M RF +++ ++FGI+S ++I + S V+I + E + G P P G+ D +LG
Sbjct: 21 MKKRFVKDIKRNCEIKSIRFGIMSKEDIIKYSEVKIMNREMYKNNSGIPYPYGVLDLKLG 80
Query: 59 TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
CETC + C GHFG++EL P+FHIG+ K ++ I+ +C CS +L ++
Sbjct: 81 AHKSNSVCETCNKKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSLLLSKEK 140
Query: 119 HKFKQALKIRNP------KNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCG 172
F LK ++ K+ K+IL+ CK KC + G + +KK
Sbjct: 141 IDFYCNLKKKSTDDSFYKKHLFKRILNNCKKVNKCY------ICGNP-QGVIKK------ 187
Query: 173 AQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLL 232
+P L + MK+ ++ + K+N + +++ L + VL + K I+ +LL
Sbjct: 188 IIKPSLD-QFMKL--KHILKVKENGKM------IIKEEDLNSLYVLKLFKNINPYHVKLL 238
Query: 233 GL-NPK-------YARPDWMILQVLXXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGA 284
+ NP+ P+ + V+ DDLT L+ I + N + Q NG
Sbjct: 239 NIENPEKLIITALLVPPNTIRPSVIIDEHGTA--EDDLTCILSEITQLNNTIYNQCTNGY 296
Query: 285 PAHIISEFAQLLQFHIATYFDNELPG--QPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
+ + LQ I + +++ P Q ATQ +P + IC RLK KEGR R NL G
Sbjct: 297 QTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSG 356
Query: 343 KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
KRVDFS+RTVI+PDP I+ID++ +P IA+ LTYPETV YNI++LK L++ G + PG
Sbjct: 357 KRVDFSSRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPG- 415
Query: 403 TGAKYIIRDDGQRLD 417
A YII+ + +D
Sbjct: 416 --ANYIIKKSKKGID 428
Score = 244 (91.0 bits), Expect = 1.3e-181, Sum P(6) = 1.3e-181
Identities = 54/143 (37%), Positives = 91/143 (63%)
Query: 1016 SVEAQKNATLFFNILLRSTFASKR-VLKEHRLT--REAFEWVIGEIESRFLQSLVAPGEM 1072
S+E K +FN ++++ S R ++ ++ ++ + ++ I ++ + + PG+
Sbjct: 1736 SIELIKKKD-YFNYIIKNYDISHRYIIHDYSFINLKQLYLFIFFNIY-KYFKYISTPGDA 1793
Query: 1073 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPG 1132
+G ++AQSIGEP TQMTL TFH+AGV++ NVTLGVPR++EIIN + I+TP L++ L+
Sbjct: 1794 VGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASNSIQTPILNIPLE-- 1851
Query: 1133 VNSTKERAKNVQCALEYTTLRSV 1155
VN A ++ LE TT+R +
Sbjct: 1852 VNDNYNFALMMKSKLEKTTIRDI 1874
Score = 228 (85.3 bits), Expect = 1.3e-181, Sum P(6) = 1.3e-181
Identities = 51/163 (31%), Positives = 88/163 (53%)
Query: 1271 KKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
KK + + + + G +L V+ E VD + SNH+I + +VLGIEA R +++E++
Sbjct: 2182 KKKKKKTVYSILVEGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKC 2241
Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
+ ++ RH+ +L D M + G ++ I R GI + +M SFEET + L ++ F
Sbjct: 2242 VEAYSIDIDIRHIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFF 2301
Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQL 1433
D + ++E+I++G+ PIGTG L + + K L L
Sbjct: 2302 KNVDEINNISESIIVGKNIPIGTGAFQLLYDYKFEKETKNLTL 2344
Score = 46 (21.3 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
Identities = 15/73 (20%), Positives = 39/73 (53%)
Query: 1199 LLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM--NDEAPK 1256
+L+++ N +M++ ++ + K+ + + + N +N +KLI+ ++ N P
Sbjct: 202 ILKVKENGKMIIKEEDLNSLYVLKLFKNINPYHVKLLNIENPEKLIITALLVPPNTIRPS 261
Query: 1257 GELNDE-SAEDDV 1268
+++ +AEDD+
Sbjct: 262 VIIDEHGTAEDDL 274
Score = 43 (20.2 bits), Expect = 7.9e-78, Sum P(6) = 7.9e-78
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 682 KTMETINDTISKAKNNVKNLIKQAQDKSL 710
K M IN+ + NN+ N+ K + +L
Sbjct: 481 KDMCDINNMNNDINNNINNIYKNTSETNL 509
Score = 43 (20.2 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 1116 VAKKIKTPSLSVFLK-PGVNSTKERAKNV 1143
V KKI PSL F+K + KE K +
Sbjct: 184 VIKKIIKPSLDQFMKLKHILKVKENGKMI 212
Score = 42 (19.8 bits), Expect = 1.4e-59, Sum P(3) = 1.4e-59
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 680 DAKTMETI-NDTISKAKNNVK 699
D K +TI ND I+ +NN+K
Sbjct: 2080 DNKINDTIFNDDINSDRNNLK 2100
Score = 40 (19.1 bits), Expect = 1.3e-181, Sum P(6) = 1.3e-181
Identities = 19/85 (22%), Positives = 37/85 (43%)
Query: 1205 NREMMVDKKLSMAAVAE---KINQEFDDD---LTCIFNDDNADKLILRIRIMNDEAPKGE 1258
N +M+ KL + + I +++ L+ FN++ KL L I N K
Sbjct: 1857 NFALMMKSKLEKTTIRDICMYIKEDYTSRGVFLSVKFNEELIQKLFLNINAYNI---KDI 1913
Query: 1259 LNDESAEDDVFLKKIESNMLTEMAL 1283
+ +S + + + KI N++ + L
Sbjct: 1914 ILKQSHINKIKINKIHINVINKYKL 1938
Score = 39 (18.8 bits), Expect = 1.8e-57, Sum P(5) = 1.8e-57
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 1065 SLVAPGEMIGCVAAQSIGEPATQ-----MTLNTFHY 1095
+L+ +MI CV Q++ Q TL FH+
Sbjct: 899 ALINIAQMIACVGQQNVAGQRIQNGFINRTLPHFHF 934
Score = 39 (18.8 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 1228 DDDLTCIFND 1237
+DDLTCI ++
Sbjct: 271 EDDLTCILSE 280
Score = 38 (18.4 bits), Expect = 1.3e-181, Sum P(6) = 1.3e-181
Identities = 17/74 (22%), Positives = 35/74 (47%)
Query: 928 KTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP 987
K I+ + +++ E +KL +R++ + + D+ W + +I A+K K+ +
Sbjct: 1464 KKIEIINNIYRNEKKKL--NRWKTKMD---NDDNYWSSDDD--SII--AKKIIKIKNKEK 1514
Query: 988 SDMHPMEVVEAVDK 1001
HP E E D+
Sbjct: 1515 RKYHPKEEKENFDR 1528
>UNIPROTKB|Q8IE49 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 986 (352.1 bits), Expect = 1.3e-181, Sum P(6) = 1.3e-181
Identities = 215/502 (42%), Positives = 301/502 (59%)
Query: 415 RLDLRYLKKSSD-HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
++ L+Y K+ +L +G VERH+ DGD VLFNRQPSLH+MSIM H+ KIM + TFR
Sbjct: 541 KISLKYANKNHVIQNLNIGDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDFKTFRF 600
Query: 474 NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
N V SPYNADFDGDEMN+HVPQ+ E RAE L LM V +++P++ ++ + QD L
Sbjct: 601 NECVCSPYNADFDGDEMNLHVPQTEEARAEALYLMNVKHNLITPKNGEVIIALTQDFLSA 660
Query: 534 CRKITKRDTFIEKDVFMNILMWWEDFDG--KVPQPTILKPRPLWTGKQVFNLII-P-KQI 589
IT +DTF+++D F + ++ D ++P P ILKP+ LWTGKQ+ +++I P K+
Sbjct: 661 SYIITNKDTFLDRDTFCLLCSYFSDASLYIELPIPAILKPKELWTGKQLISVLIKPNKKE 720
Query: 590 NL---FRTAAWHADNDKGILT---AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
N F N G L D+ V K EL+ G+L KK LG+S L + +
Sbjct: 721 NTIINFEIQEREYSNKFGDLKHLCLNDSYVCFYKSELICGSLGKKVLGSSKYGLFYYLIH 780
Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
A K + L + + +IGI D E D + K V N I
Sbjct: 781 HNSSHIALKIMNRLSKLTSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLKGYEKVNNEII 840
Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
+K ++ +PG T+ E+ E KV +L+ R++AG + + L N M +G+KG+
Sbjct: 841 LYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCNQYLHYLNKPLIMFNSGAKGAL 900
Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
INI+QM ACVGQQNV G+RI GF++RTLPHF ESRGFV+NS+ GL+P EFFF
Sbjct: 901 INIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFFF 960
Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
H M GREGL+DTAVKT+ETGY+QRRL+KA+ED+ + YD +VR+ ++QF+YG+D ++
Sbjct: 961 HTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIVQFIYGDDALNP 1020
Query: 884 VWIESQTLDSLKMKKSEFDKAF 905
+I D+ +FDK F
Sbjct: 1021 SYI-----DNNNTYLDQFDKVF 1037
Score = 501 (181.4 bits), Expect = 1.3e-181, Sum P(6) = 1.3e-181
Identities = 144/435 (33%), Positives = 224/435 (51%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLG 58
M RF +++ ++FGI+S ++I + S V+I + E + G P P G+ D +LG
Sbjct: 21 MKKRFVKDIKRNCEIKSIRFGIMSKEDIIKYSEVKIMNREMYKNNSGIPYPYGVLDLKLG 80
Query: 59 TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
CETC + C GHFG++EL P+FHIG+ K ++ I+ +C CS +L ++
Sbjct: 81 AHKSNSVCETCNKKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSLLLSKEK 140
Query: 119 HKFKQALKIRNP------KNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCG 172
F LK ++ K+ K+IL+ CK KC + G + +KK
Sbjct: 141 IDFYCNLKKKSTDDSFYKKHLFKRILNNCKKVNKCY------ICGNP-QGVIKK------ 187
Query: 173 AQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLL 232
+P L + MK+ ++ + K+N + +++ L + VL + K I+ +LL
Sbjct: 188 IIKPSLD-QFMKL--KHILKVKENGKM------IIKEEDLNSLYVLKLFKNINPYHVKLL 238
Query: 233 GL-NPK-------YARPDWMILQVLXXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGA 284
+ NP+ P+ + V+ DDLT L+ I + N + Q NG
Sbjct: 239 NIENPEKLIITALLVPPNTIRPSVIIDEHGTA--EDDLTCILSEITQLNNTIYNQCTNGY 296
Query: 285 PAHIISEFAQLLQFHIATYFDNELPG--QPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
+ + LQ I + +++ P Q ATQ +P + IC RLK KEGR R NL G
Sbjct: 297 QTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSG 356
Query: 343 KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
KRVDFS+RTVI+PDP I+ID++ +P IA+ LTYPETV YNI++LK L++ G + PG
Sbjct: 357 KRVDFSSRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPG- 415
Query: 403 TGAKYIIRDDGQRLD 417
A YII+ + +D
Sbjct: 416 --ANYIIKKSKKGID 428
Score = 244 (91.0 bits), Expect = 1.3e-181, Sum P(6) = 1.3e-181
Identities = 54/143 (37%), Positives = 91/143 (63%)
Query: 1016 SVEAQKNATLFFNILLRSTFASKR-VLKEHRLT--REAFEWVIGEIESRFLQSLVAPGEM 1072
S+E K +FN ++++ S R ++ ++ ++ + ++ I ++ + + PG+
Sbjct: 1736 SIELIKKKD-YFNYIIKNYDISHRYIIHDYSFINLKQLYLFIFFNIY-KYFKYISTPGDA 1793
Query: 1073 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPG 1132
+G ++AQSIGEP TQMTL TFH+AGV++ NVTLGVPR++EIIN + I+TP L++ L+
Sbjct: 1794 VGSISAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASNSIQTPILNIPLE-- 1851
Query: 1133 VNSTKERAKNVQCALEYTTLRSV 1155
VN A ++ LE TT+R +
Sbjct: 1852 VNDNYNFALMMKSKLEKTTIRDI 1874
Score = 228 (85.3 bits), Expect = 1.3e-181, Sum P(6) = 1.3e-181
Identities = 51/163 (31%), Positives = 88/163 (53%)
Query: 1271 KKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
KK + + + + G +L V+ E VD + SNH+I + +VLGIEA R +++E++
Sbjct: 2182 KKKKKKTVYSILVEGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKC 2241
Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
+ ++ RH+ +L D M + G ++ I R GI + +M SFEET + L ++ F
Sbjct: 2242 VEAYSIDIDIRHIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFF 2301
Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQL 1433
D + ++E+I++G+ PIGTG L + + K L L
Sbjct: 2302 KNVDEINNISESIIVGKNIPIGTGAFQLLYDYKFEKETKNLTL 2344
Score = 46 (21.3 bits), Expect = 8.1e-13, Sum P(2) = 8.1e-13
Identities = 15/73 (20%), Positives = 39/73 (53%)
Query: 1199 LLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM--NDEAPK 1256
+L+++ N +M++ ++ + K+ + + + N +N +KLI+ ++ N P
Sbjct: 202 ILKVKENGKMIIKEEDLNSLYVLKLFKNINPYHVKLLNIENPEKLIITALLVPPNTIRPS 261
Query: 1257 GELNDE-SAEDDV 1268
+++ +AEDD+
Sbjct: 262 VIIDEHGTAEDDL 274
Score = 43 (20.2 bits), Expect = 7.9e-78, Sum P(6) = 7.9e-78
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 682 KTMETINDTISKAKNNVKNLIKQAQDKSL 710
K M IN+ + NN+ N+ K + +L
Sbjct: 481 KDMCDINNMNNDINNNINNIYKNTSETNL 509
Score = 43 (20.2 bits), Expect = 3.4e-11, Sum P(3) = 3.4e-11
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 1116 VAKKIKTPSLSVFLK-PGVNSTKERAKNV 1143
V KKI PSL F+K + KE K +
Sbjct: 184 VIKKIIKPSLDQFMKLKHILKVKENGKMI 212
Score = 42 (19.8 bits), Expect = 1.4e-59, Sum P(3) = 1.4e-59
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 680 DAKTMETI-NDTISKAKNNVK 699
D K +TI ND I+ +NN+K
Sbjct: 2080 DNKINDTIFNDDINSDRNNLK 2100
Score = 40 (19.1 bits), Expect = 1.3e-181, Sum P(6) = 1.3e-181
Identities = 19/85 (22%), Positives = 37/85 (43%)
Query: 1205 NREMMVDKKLSMAAVAE---KINQEFDDD---LTCIFNDDNADKLILRIRIMNDEAPKGE 1258
N +M+ KL + + I +++ L+ FN++ KL L I N K
Sbjct: 1857 NFALMMKSKLEKTTIRDICMYIKEDYTSRGVFLSVKFNEELIQKLFLNINAYNI---KDI 1913
Query: 1259 LNDESAEDDVFLKKIESNMLTEMAL 1283
+ +S + + + KI N++ + L
Sbjct: 1914 ILKQSHINKIKINKIHINVINKYKL 1938
Score = 39 (18.8 bits), Expect = 1.8e-57, Sum P(5) = 1.8e-57
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 1065 SLVAPGEMIGCVAAQSIGEPATQ-----MTLNTFHY 1095
+L+ +MI CV Q++ Q TL FH+
Sbjct: 899 ALINIAQMIACVGQQNVAGQRIQNGFINRTLPHFHF 934
Score = 39 (18.8 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 1228 DDDLTCIFND 1237
+DDLTCI ++
Sbjct: 271 EDDLTCILSE 280
Score = 38 (18.4 bits), Expect = 1.3e-181, Sum P(6) = 1.3e-181
Identities = 17/74 (22%), Positives = 35/74 (47%)
Query: 928 KTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP 987
K I+ + +++ E +KL +R++ + + D+ W + +I A+K K+ +
Sbjct: 1464 KKIEIINNIYRNEKKKL--NRWKTKMD---NDDNYWSSDDD--SII--AKKIIKIKNKEK 1514
Query: 988 SDMHPMEVVEAVDK 1001
HP E E D+
Sbjct: 1515 RKYHPKEEKENFDR 1528
>UNIPROTKB|J9P629 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 CTD:11128 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:AAEX03002853 RefSeq:XP_536399.2
Ensembl:ENSCAFT00000047369 GeneID:479256 KEGG:cfa:479256
Uniprot:J9P629
Length = 1390
Score = 1280 (455.6 bits), Expect = 4.5e-178, Sum P(2) = 4.5e-178
Identities = 282/653 (43%), Positives = 393/653 (60%)
Query: 260 DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
DDLT +L II N+ +++ +GA +I E LQ A Y ++EL G P
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPK 335
Query: 320 RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
+ + RLK K+GR RGNL GKRVDFS RTVI+PDP + ID++ VP +A LT+PE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEK 395
Query: 380 VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVER 437
V NI L++LV GP PG A +I + Q + L+Y ++ L+ G VER
Sbjct: 396 VNKANINFLRKLVRNGPEVHPG---ANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVER 452
Query: 438 HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
HL DGD VLFNRQPSLHK+SIM H K+ P+ TFR N V +PYNADFDGDEMN+H+PQ+
Sbjct: 453 HLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQT 512
Query: 498 FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK----DVFMNIL 553
E +AE L LM +V+P++ P++ +QD L G +T +DTF ++ + +IL
Sbjct: 513 EEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASIL 572
Query: 554 MWWED-FDGKVPQPTILKPRPLWTGKQVFNLII------PKQINLFRTAAWHADNDKGIL 606
+ ++ +P PTILKP LWTGKQ+F++I+ P + NL RT L
Sbjct: 573 VGKDEKIKVHLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANL-RTKGKQYCGKGEDL 631
Query: 607 TAGDTLVRIEKGELLSGTLCKKTLGT-STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
D+ V I+ EL+SG++ K TLG+ S ++ +++ + G + A + L +L
Sbjct: 632 CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYL 691
Query: 666 LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
FSIGIGD ++ + ++ I+ L+ +PG T E+ E
Sbjct: 692 SNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEAL 751
Query: 726 VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
+ + L+ RD AGS+ + L +SN+ M GSKGSFINISQM ACVGQQ + G R+P
Sbjct: 752 ILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD 811
Query: 786 GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
GF +R+LPHF K P ++GFV NS+ GLTP EFFFH M GREGL+DTAVKT+ETGY+
Sbjct: 812 GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYM 871
Query: 846 QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
QRRLVK++ED+ +YD TVR+S GD+IQF+YG DG+D +E + + L+ K+
Sbjct: 872 QRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKR 923
Score = 821 (294.1 bits), Expect = 1.4e-122, Sum P(2) = 1.4e-122
Identities = 206/566 (36%), Positives = 302/566 (53%)
Query: 7 YSPAEVAK-VRMVQFGILSPDEIRQMSVVQIEHGETTERGK---PKPGGLSDPRLGTIDR 62
+ +VAK + + FG+ SP+E+RQ + +Q+ + P G+ D R+GT ++
Sbjct: 6 FRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGTSEK 65
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-F 121
CETC N+A+C GH+G+++L P FH+G+ + V+ I++ +C C I+ +++ K F
Sbjct: 66 DRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQF 125
Query: 122 KQALKIRN----PKNRLKK-ILDACKNKTKCEG-GDEIDVPGQDGEEPL--KKNKGGCGA 173
LK K LKK I D C+ K C G + G + +K K
Sbjct: 126 LDYLKRPGLTYLQKRGLKKKISDKCRKKNICHYCGAFNGTVKKCGLLKIIHEKYKTNKKV 185
Query: 174 QQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
P ++ + ++ + N + E L + + L VL + KRI ED LL
Sbjct: 186 VDPIVS----NFLQSFETAIEHNKEVEPLLGRAQ--ENLNPLVVLNLFKRIPAEDVPLLL 239
Query: 234 LNPKYARPDWMILQVLX-----------XXXXXXXXSDDLTHQLAMIIRHNENLRRQERN 282
+NP+ +P +IL L DDLT +L II N+ +++ +
Sbjct: 240 MNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRIS 299
Query: 283 GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
GA +I E LQ A Y ++EL G P + + RLK K+GR RGNL G
Sbjct: 300 GAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 343 KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
KRVDFS RTVI+PDP + ID++ VP +A LT+PE V NI L++LV GP PG
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG- 417
Query: 403 TGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 460
A +I + Q + L+Y ++ L+ G VERHL DGD VLFNRQPSLHK+SIM
Sbjct: 418 --ANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMA 475
Query: 461 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
H K+ P+ TFR N V +PYNADFDGDEMN+H+PQ+ E +AE L LM +V+P++
Sbjct: 476 HLAKVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEK 546
P++ +QD L G +T +DTF ++
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDR 561
Score = 471 (170.9 bits), Expect = 4.5e-178, Sum P(2) = 4.5e-178
Identities = 121/382 (31%), Positives = 204/382 (53%)
Query: 1039 RVLKE-HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 1097
RVL + R+T E + +++++ + PG +G + AQSIGEP TQMTL TFH+AG
Sbjct: 998 RVLYQLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057
Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE 1157
V++ N+TLGVPR++EIIN +K I TP ++ L + + A+ V+ +E T L ++E
Sbjct: 1058 VASMNITLGVPRIKEIINASKAISTPIITAQLDK--DDDADYARLVKGRIEKTLLGEISE 1115
Query: 1158 ATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMA 1217
E + PD +++ +E ++ LLR+E+N E V + M+
Sbjct: 1116 YIEEVFLPDDCFILVKLSLERIR------------------LLRLEVNAET-VRYSICMS 1156
Query: 1218 AVAEKINQE--FDDDLTCIFNDDNA-DKLILRIRIMNDEAPKGELND--ESAEDDVFLKK 1272
+ K + + C+ +N+ + ++ + ++ PK + E + + + +
Sbjct: 1157 KLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDE 1216
Query: 1273 IESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
++ + G NL AVM V RTTSN+ E+ + LGIEA R +++E++ +
Sbjct: 1217 QSGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMV 1276
Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
G ++ RH+ +L D MTY+G ++ ITR G+ + +M SFE+T D L DAA F +
Sbjct: 1277 NHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQ 1336
Query: 1393 SDYLRGVTENIMLGQLAPIGTG 1414
D + GV+E I++G IGTG
Sbjct: 1337 KDSVCGVSECIIMGIPMNIGTG 1358
Score = 51 (23.0 bits), Expect = 2.9e-78, Sum P(2) = 2.9e-78
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 735 DEAGSSAQKSLSESNNLKA-MVTAGSKGS 762
+++G K L E +NL+A M T G KG+
Sbjct: 1216 EQSGKEKYKLLVEGDNLRAVMATHGVKGT 1244
Score = 45 (20.9 bits), Expect = 3.1e-39, Sum P(2) = 3.1e-39
Identities = 37/162 (22%), Positives = 67/162 (41%)
Query: 448 NRQPSLHKMSIMGHRI----KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAE 503
N P L+ ++ HR+ K P T NL+ + D + HV F
Sbjct: 47 NHAPLLY--GVLDHRMGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGY-FRAVIG 103
Query: 504 VLELMMVPKC--IVSPQSNRPVMGIVQD---TLLGCRKITKRDTFIEKDVFMNILMWWED 558
+L+++ C ++S + + + ++ T L R + K+ + +K NI +
Sbjct: 104 ILQMICKTCCHIMLSQEEKKQFLDYLKRPGLTYLQKRGLKKKIS--DKCRKKNICHYCGA 161
Query: 559 FDGKVPQPTILK--PRPLWTGKQVFNLIIPKQINLFRTAAWH 598
F+G V + +LK T K+V + I+ + F TA H
Sbjct: 162 FNGTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEH 203
>UNIPROTKB|A4IF62 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9913 "Bos taurus" [GO:0045087 "innate immune
response" evidence=ISS] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0032728 KO:K03018 eggNOG:COG0086 GO:GO:0032549
GeneTree:ENSGT00700000104490 HOVERGEN:HBG004339 EMBL:BC134422
IPI:IPI00701819 RefSeq:NP_001077219.1 UniGene:Bt.58772
ProteinModelPortal:A4IF62 STRING:A4IF62 PRIDE:A4IF62
Ensembl:ENSBTAT00000017638 GeneID:540308 KEGG:bta:540308 CTD:11128
HOGENOM:HOG000222974 InParanoid:A4IF62 OMA:PRRPLIF
OrthoDB:EOG4QVCB4 NextBio:20878554 ArrayExpress:A4IF62
PANTHER:PTHR19376:SF15 Uniprot:A4IF62
Length = 1390
Score = 1280 (455.6 bits), Expect = 4.5e-178, Sum P(2) = 4.5e-178
Identities = 279/653 (42%), Positives = 394/653 (60%)
Query: 260 DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
DDLT +L II N+ +++ +GA +I E LQ A Y ++EL G P
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPK 335
Query: 320 RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
+ + RLK K+GR RGNL GKRVDFS RTVI+PDP + ID++ VP +A LT+PE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEK 395
Query: 380 VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVER 437
V NI L++LV GP PG A +I + Q + L+Y ++ L+ G VER
Sbjct: 396 VNKANINFLRKLVRNGPEVHPG---ANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVER 452
Query: 438 HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
HL DGD VLFNRQPSLHK+SIM H ++ P+ TFR N V +PYNADFDGDEMN+H+PQ+
Sbjct: 453 HLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQT 512
Query: 498 FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK----DVFMNIL 553
E +AE L LM +V+P++ P++ +QD L G +T +DTF ++ + +IL
Sbjct: 513 EEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASIL 572
Query: 554 MWWED-FDGKVPQPTILKPRPLWTGKQVFNLII------PKQINLFRTAAWHADNDKGIL 606
+ ++ ++P PTILKP LWTGKQ+F++I+ P + NL + + L
Sbjct: 573 VGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGRGED-L 631
Query: 607 TAGDTLVRIEKGELLSGTLCKKTLGT-STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
D+ V I+ EL+SG++ K TLG+ S ++ +++ + G + A + L +L
Sbjct: 632 CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYL 691
Query: 666 LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
FSIGIGD ++ + ++ I+ L+ +PG T E+ E
Sbjct: 692 SNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEAL 751
Query: 726 VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
+ + L+ RD AGS+ + L +SN+ M GSKGSFINISQM ACVGQQ + G R+P
Sbjct: 752 ILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD 811
Query: 786 GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
GF +R+LPHF K P ++GFV NS+ GLTP EFFFH M GREGL+DTAVKT+ETGY+
Sbjct: 812 GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYM 871
Query: 846 QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
QRRLVK++ED+ +YD TVR+S GD+IQF+YG DG+D +E + + L+ K+
Sbjct: 872 QRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKR 923
Score = 815 (292.0 bits), Expect = 6.5e-122, Sum P(2) = 6.5e-122
Identities = 204/566 (36%), Positives = 301/566 (53%)
Query: 7 YSPAEVAK-VRMVQFGILSPDEIRQMSVVQIEHGETTERGK---PKPGGLSDPRLGTIDR 62
+ +VAK + + FG+ S +E+RQ + +Q+ + P G+ D R+GT ++
Sbjct: 6 FRETDVAKKISHICFGMKSAEEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGTSEK 65
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-F 121
CETC N+A+C GH+G+++L P FH+G+ + V+ I++ +C C I+ +++ K F
Sbjct: 66 DRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQF 125
Query: 122 KQALKIRN----PKNRLKK-ILDACKNKTKCEG-GDEIDVPGQDGEEPL--KKNKGGCGA 173
LK K LKK I D C+ K C G + G + +K K
Sbjct: 126 LDYLKRPGLTYLQKRGLKKKISDKCRKKNTCHHCGAFNGTVKKCGLLKIIHEKYKTNKKV 185
Query: 174 QQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
P ++ + ++ + N + E L + + L VL + KRI ED LL
Sbjct: 186 VDPIVS----SFLQSFETAIEHNKEVEPLLGKAQ--ENLNPLVVLNLFKRIPAEDIPLLL 239
Query: 234 LNPKYARPDWMILQVLX-----------XXXXXXXXSDDLTHQLAMIIRHNENLRRQERN 282
+NP+ +P +IL L DDLT +L II N+ +++ +
Sbjct: 240 MNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRIS 299
Query: 283 GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
GA +I E LQ A Y ++EL G P + + RLK K+GR RGNL G
Sbjct: 300 GAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 343 KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
KRVDFS RTVI+PDP + ID++ VP +A LT+PE V NI L++LV GP PG
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG- 417
Query: 403 TGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 460
A +I + Q + L+Y ++ L+ G VERHL DGD VLFNRQPSLHK+SIM
Sbjct: 418 --ANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMA 475
Query: 461 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
H ++ P+ TFR N V +PYNADFDGDEMN+H+PQ+ E +AE L LM +V+P++
Sbjct: 476 HLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEK 546
P++ +QD L G +T +DTF ++
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDR 561
Score = 471 (170.9 bits), Expect = 4.5e-178, Sum P(2) = 4.5e-178
Identities = 121/382 (31%), Positives = 204/382 (53%)
Query: 1039 RVLKE-HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 1097
RVL + R+T E + +++++ + PG +G + AQSIGEP TQMTL TFH+AG
Sbjct: 998 RVLYQLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057
Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE 1157
V++ N+TLGVPR++EIIN +K I TP ++ L + + A+ V+ +E T L ++E
Sbjct: 1058 VASMNITLGVPRIKEIINASKAISTPIITAQLDK--DDDADYARLVKGRIEKTLLGEISE 1115
Query: 1158 ATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMA 1217
E + PD +++ +E ++ LLR+E+N E V + M+
Sbjct: 1116 YIEEVFLPDDCFILVKLSLERIR------------------LLRLEVNAET-VRYSICMS 1156
Query: 1218 AVAEKINQE--FDDDLTCIFNDDNA-DKLILRIRIMNDEAPKGELND--ESAEDDVFLKK 1272
+ K + + C+ +N+ + ++ + ++ PK + E + + + +
Sbjct: 1157 KLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDE 1216
Query: 1273 IESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
++ + G NL AVM V RTTSN+ E+ + LGIEA R +++E++ +
Sbjct: 1217 QSGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMV 1276
Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
G ++ RH+ +L D MTY+G ++ ITR G+ + +M SFE+T D L DAA F +
Sbjct: 1277 NHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQ 1336
Query: 1393 SDYLRGVTENIMLGQLAPIGTG 1414
D + GV+E I++G IGTG
Sbjct: 1337 KDSVCGVSECIIMGIPMNIGTG 1358
Score = 51 (23.0 bits), Expect = 1.4e-77, Sum P(2) = 1.4e-77
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 735 DEAGSSAQKSLSESNNLKA-MVTAGSKGS 762
+++G K L E +NL+A M T G KG+
Sbjct: 1216 EQSGKEKYKLLVEGDNLRAVMATHGVKGT 1244
Score = 38 (18.4 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 559 FDGKVPQPTILK--PRPLWTGKQVFNLIIPKQINLFRTAAWH 598
F+G V + +LK T K+V + I+ + F TA H
Sbjct: 162 FNGTVKKCGLLKIIHEKYKTNKKVVDPIVSSFLQSFETAIEH 203
>UNIPROTKB|O14802 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=NAS] [GO:0045087 "innate immune response" evidence=IMP]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IMP] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:CH471083 GO:GO:0045087 GO:GO:0051607 Gene3D:2.40.40.20
InterPro:IPR009010 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
GO:GO:0032728 KO:K03018 GO:GO:0006386 GO:GO:0006385 eggNOG:COG0086
GO:GO:0032549 HOVERGEN:HBG004339 CTD:11128 HOGENOM:HOG000222974
OMA:PRRPLIF OrthoDB:EOG4QVCB4 PANTHER:PTHR19376:SF15 EMBL:AF021351
EMBL:AL512628 EMBL:BC041089 EMBL:AY091459 IPI:IPI00024163
RefSeq:NP_008986.2 UniGene:Hs.436896 ProteinModelPortal:O14802
SMR:O14802 IntAct:O14802 STRING:O14802 PhosphoSite:O14802
PaxDb:O14802 PRIDE:O14802 Ensembl:ENST00000372371 GeneID:11128
KEGG:hsa:11128 UCSC:uc001jzn.3 GeneCards:GC10M079729
HGNC:HGNC:30074 HPA:HPA037926 MIM:607694 MIM:614258
neXtProt:NX_O14802 Orphanet:88637 Orphanet:77295
PharmGKB:PA134900426 InParanoid:O14802 PhylomeDB:O14802
ChiTaRS:POLR3A GenomeRNAi:11128 NextBio:42292 ArrayExpress:O14802
Bgee:O14802 CleanEx:HS_POLR3A Genevestigator:O14802
GermOnline:ENSG00000148606 Uniprot:O14802
Length = 1390
Score = 1286 (457.8 bits), Expect = 5.7e-178, Sum P(2) = 5.7e-178
Identities = 282/653 (43%), Positives = 396/653 (60%)
Query: 260 DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
DDLT +L II N+ +++ +GA +I E LQ A Y ++EL G P
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPK 335
Query: 320 RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
+ + RLK K+GR RGNL GKRVDFS RTVI+PDP + ID++ VP +A LT+PE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEK 395
Query: 380 VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVER 437
V NI L++LV+ GP PG A +I + Q + L+Y ++ L+ G VER
Sbjct: 396 VNKANINFLRKLVQNGPEVHPG---ANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVER 452
Query: 438 HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
HL DGD VLFNRQPSLHK+SIM H ++ P+ TFR N V +PYNADFDGDEMN+H+PQ+
Sbjct: 453 HLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQT 512
Query: 498 FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK----DVFMNIL 553
E +AE L LM +V+P++ P++ +QD L G +T +DTF ++ + +IL
Sbjct: 513 EEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASIL 572
Query: 554 MWWED-FDGKVPQPTILKPRPLWTGKQVFNLII------PKQINLFRTAAWHADNDKGIL 606
+ ++ ++P PTILKP LWTGKQ+F++I+ P + NL RT L
Sbjct: 573 VGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANL-RTKGKQYCGKGEDL 631
Query: 607 TAGDTLVRIEKGELLSGTLCKKTLGT-STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
A D+ V I+ EL+SG++ K TLG+ S ++ +++ + G + A + L +L
Sbjct: 632 CANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYL 691
Query: 666 LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
FSIGIGD ++ + ++ I+ L+ +PG T E+ E
Sbjct: 692 SNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEAL 751
Query: 726 VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
+ + L+ RD AGS+ + L +SN+ M GSKGSFINISQM ACVGQQ + G R+P
Sbjct: 752 ILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD 811
Query: 786 GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
GF +R+LPHF K P ++GFV NS+ GLTP EFFFH M GREGL+DTAVKT+ETGY+
Sbjct: 812 GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYM 871
Query: 846 QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
QRRLVK++ED+ +YD TVR+S GD+IQF+YG DG+D +E + + L+ K+
Sbjct: 872 QRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKR 923
Score = 821 (294.1 bits), Expect = 7.5e-122, Sum P(2) = 7.5e-122
Identities = 205/566 (36%), Positives = 303/566 (53%)
Query: 7 YSPAEVAK-VRMVQFGILSPDEIRQMSVVQIEHGETTERGK---PKPGGLSDPRLGTIDR 62
+ +VAK + + FG+ SP+E+RQ + +Q+ + P G+ D R+GT ++
Sbjct: 6 FRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMGTSEK 65
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-F 121
CETC N+A+C GH+G+++L P FH+G+ + V+ I++ +C C I+ +++ K F
Sbjct: 66 DRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQF 125
Query: 122 KQALKIRN----PKNRLKK-ILDACKNKTKCEG-GDEIDVPGQDGEEPL--KKNKGGCGA 173
LK K LKK I D C+ K C G + G + +K K
Sbjct: 126 LDYLKRPGLTYLQKRGLKKKISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKV 185
Query: 174 QQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
P ++ + ++ + N + E L + + L VL + KRI ED LL
Sbjct: 186 VDPIVS----NFLQSFETAIEHNKEVEPLLGRAQ--ENLNPLVVLNLFKRIPAEDVPLLL 239
Query: 234 LNPKYARPDWMILQVLX-----------XXXXXXXXSDDLTHQLAMIIRHNENLRRQERN 282
+NP+ +P +IL L DDLT +L II N+ +++ +
Sbjct: 240 MNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRIS 299
Query: 283 GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
GA +I E LQ A Y ++EL G P + + RLK K+GR RGNL G
Sbjct: 300 GAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 343 KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
KRVDFS RTVI+PDP + ID++ VP +A LT+PE V NI L++LV+ GP PG
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG- 417
Query: 403 TGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 460
A +I + Q + L+Y ++ L+ G VERHL DGD VLFNRQPSLHK+SIM
Sbjct: 418 --ANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMA 475
Query: 461 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
H ++ P+ TFR N V +PYNADFDGDEMN+H+PQ+ E +AE L LM +V+P++
Sbjct: 476 HLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEK 546
P++ +QD L G +T +DTF ++
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDR 561
Score = 464 (168.4 bits), Expect = 5.7e-178, Sum P(2) = 5.7e-178
Identities = 120/382 (31%), Positives = 203/382 (53%)
Query: 1039 RVLKE-HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 1097
RVL + R+T E + +++++ + PG +G + AQSIGEP TQMTL TFH+AG
Sbjct: 998 RVLYQLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057
Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE 1157
V++ N+TLGVPR++EIIN +K I TP ++ L + + A+ V+ +E T L ++E
Sbjct: 1058 VASMNITLGVPRIKEIINASKAISTPIITAQLDK--DDDADYARLVKGRIEKTLLGEISE 1115
Query: 1158 ATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMA 1217
E + PD +++ +E ++ LLR+E+N E V + +
Sbjct: 1116 YIEEVFLPDDCFILVKLSLERIR------------------LLRLEVNAET-VRYSICTS 1156
Query: 1218 AVAEKINQE--FDDDLTCIFNDDNA-DKLILRIRIMNDEAPKGELND--ESAEDDVFLKK 1272
+ K + + C+ +N+ + ++ + ++ PK + E + + + +
Sbjct: 1157 KLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDE 1216
Query: 1273 IESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
++ + G NL AVM V RTTSN+ E+ + LGIEA R +++E++ +
Sbjct: 1217 QSGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMV 1276
Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
G ++ RH+ +L D MTY+G ++ ITR G+ + +M SFE+T D L DAA F +
Sbjct: 1277 NHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQ 1336
Query: 1393 SDYLRGVTENIMLGQLAPIGTG 1414
D + GV+E I++G IGTG
Sbjct: 1337 KDSVCGVSECIIMGIPMNIGTG 1358
Score = 51 (23.0 bits), Expect = 2.9e-78, Sum P(2) = 2.9e-78
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 735 DEAGSSAQKSLSESNNLKA-MVTAGSKGS 762
+++G K L E +NL+A M T G KG+
Sbjct: 1216 EQSGKEKYKLLVEGDNLRAVMATHGVKGT 1244
Score = 38 (18.4 bits), Expect = 9.5e-38, Sum P(2) = 9.5e-38
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 559 FDGKVPQPTILK--PRPLWTGKQVFNLIIPKQINLFRTAAWH 598
F+G V + +LK T K+V + I+ + F TA H
Sbjct: 162 FNGTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEH 203
>UNIPROTKB|F1S2E6 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:CU407090 RefSeq:XP_001929395.1 Ensembl:ENSSSCT00000011305
GeneID:100156229 KEGG:ssc:100156229 Uniprot:F1S2E6
Length = 1390
Score = 1281 (456.0 bits), Expect = 7.2e-178, Sum P(2) = 7.2e-178
Identities = 282/653 (43%), Positives = 394/653 (60%)
Query: 260 DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
DDLT +L II N+ +++ +GA +I E LQ A Y ++EL G P
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPK 335
Query: 320 RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
+ + RLK K+GR RGNL GKRVDFS RTVI+PDP + ID++ VP +A LT+PE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEK 395
Query: 380 VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVER 437
V NI L++LV GP PG A +I + Q + L+Y ++ L+ G VER
Sbjct: 396 VNKANITFLRKLVRNGPEVHPG---ANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVER 452
Query: 438 HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
HL DGD VLFNRQPSLHK+SIM H ++ P+ TFR N V +PYNADFDGDEMN+H+PQ+
Sbjct: 453 HLIDGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQT 512
Query: 498 FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK----DVFMNIL 553
E +AE L LM +V+P++ P++ +QD L G +T +DTF ++ + +IL
Sbjct: 513 EEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASIL 572
Query: 554 MWWED-FDGKVPQPTILKPRPLWTGKQVFNLII------PKQINLFRTAAWHADNDKGIL 606
+ ++ ++P PTILKP LWTGKQVF++I+ P + NL RT L
Sbjct: 573 VGKDEKIKVRLPPPTILKPVTLWTGKQVFSVILRPSYDNPVRANL-RTKGKQYCGKGEDL 631
Query: 607 TAGDTLVRIEKGELLSGTLCKKTLGT-STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
D+ V I+ EL+SG++ K TLG+ S ++ +++ + G + A + L +L
Sbjct: 632 CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYL 691
Query: 666 LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
FSIGIGD ++ + ++ I+ L+ +PG T E+ E
Sbjct: 692 SNRGFSIGIGDVTPGQGLLKAKYELLNAGYRKCDEYIEALNTGKLQQQPGCTAEETLEAL 751
Query: 726 VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
+ + L+ RD AGS+ + L +SN+ M GSKGSFINISQM ACVGQQ + G R+P
Sbjct: 752 ILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD 811
Query: 786 GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
GF +R+LPHF K P ++GFV NS+ GLTP EFFFH M GREGL+DTAVKT+ETGY+
Sbjct: 812 GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYM 871
Query: 846 QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
QRRLVK++ED+ +YD TVR+S GD+IQF+YG DG+D +E + + L+ K+
Sbjct: 872 QRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKR 923
Score = 814 (291.6 bits), Expect = 1.7e-121, Sum P(2) = 1.7e-121
Identities = 204/566 (36%), Positives = 301/566 (53%)
Query: 7 YSPAEVAK-VRMVQFGILSPDEIRQMSVVQIEHGETTERGK---PKPGGLSDPRLGTIDR 62
+ +VAK + + FG+ S +E+RQ + +Q+ + P G+ D R+GT ++
Sbjct: 6 FRETDVAKKISHICFGMKSAEEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGTSEK 65
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-F 121
CETC N+A+C GH+G+++L P FH+G+ + V+ I++ +C C I+ +++ K F
Sbjct: 66 DRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEERKQF 125
Query: 122 KQALKIRN----PKNRLKK-ILDACKNKTKCEG-GDEIDVPGQDGEEPL--KKNKGGCGA 173
LK K LKK I D C+ K C G + G + +K K
Sbjct: 126 LDYLKRPGLTYLQKRGLKKKISDKCRKKNTCHHCGAFNGTVKKCGLLKIIHEKYKTNKKV 185
Query: 174 QQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
P ++ + ++ + N + E L + + L VL + KRI ED LL
Sbjct: 186 VDPIVS----NFLQSFETAIEHNKEVEPLLGRAQ--ENLNPLVVLNLFKRIPAEDIPLLL 239
Query: 234 LNPKYARPDWMILQVLX-----------XXXXXXXXSDDLTHQLAMIIRHNENLRRQERN 282
+NP+ +P +IL L DDLT +L II N+ +++ +
Sbjct: 240 MNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRIS 299
Query: 283 GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
GA +I E LQ A Y ++EL G P + + RLK K+GR RGNL G
Sbjct: 300 GAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 343 KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
KRVDFS RTVI+PDP + ID++ VP +A LT+PE V NI L++LV GP PG
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANITFLRKLVRNGPEVHPG- 417
Query: 403 TGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 460
A +I + Q + L+Y ++ L+ G VERHL DGD VLFNRQPSLHK+SIM
Sbjct: 418 --ANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMA 475
Query: 461 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
H ++ P+ TFR N V +PYNADFDGDEMN+H+PQ+ E +AE L LM +V+P++
Sbjct: 476 HLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEK 546
P++ +QD L G +T +DTF ++
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDR 561
Score = 468 (169.8 bits), Expect = 7.2e-178, Sum P(2) = 7.2e-178
Identities = 121/382 (31%), Positives = 204/382 (53%)
Query: 1039 RVLKE-HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 1097
RVL + R+T E + +++++ + PG +G + AQSIGEP TQMTL TFH+AG
Sbjct: 998 RVLYQLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057
Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE 1157
V++ N+TLGVPR++EIIN +K I TP ++ L + + A+ V+ +E T L ++E
Sbjct: 1058 VASMNITLGVPRIKEIINASKAISTPIITAQLDK--DDDADYARLVKGRIEKTLLGEISE 1115
Query: 1158 ATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMA 1217
E + PD +I+ +E ++ LLR+E+N E V + M+
Sbjct: 1116 YIEEVFLPDDCFILIKLSLERIR------------------LLRLEVNAET-VRYSICMS 1156
Query: 1218 AVAEKINQE--FDDDLTCIFNDDNA-DKLILRIRIMNDEAPKGELND--ESAEDDVFLKK 1272
+ K + + C+ +N+ + ++ + ++ PK + E + + + +
Sbjct: 1157 KLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDE 1216
Query: 1273 IESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
++ + G NL AVM V +TTSN+ E+ + LGIEA R +++E++ +
Sbjct: 1217 QSGKEKYKLLVEGDNLRAVMATHGVKGTQTTSNNTYEVEKTLGIEAARTTIINEIQYTMV 1276
Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
G ++ RH+ +L D MTY+G ++ ITR G+ + +M SFE+T D L DAA F +
Sbjct: 1277 NHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQ 1336
Query: 1393 SDYLRGVTENIMLGQLAPIGTG 1414
D + GV+E I++G IGTG
Sbjct: 1337 KDSVCGVSECIIMGIPMNIGTG 1358
Score = 51 (23.0 bits), Expect = 1.6e-76, Sum P(3) = 1.6e-76
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 735 DEAGSSAQKSLSESNNLKA-MVTAGSKGS 762
+++G K L E +NL+A M T G KG+
Sbjct: 1216 EQSGKEKYKLLVEGDNLRAVMATHGVKGT 1244
Score = 38 (18.4 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 559 FDGKVPQPTILK--PRPLWTGKQVFNLIIPKQINLFRTAAWH 598
F+G V + +LK T K+V + I+ + F TA H
Sbjct: 162 FNGTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEH 203
Score = 37 (18.1 bits), Expect = 1.6e-76, Sum P(3) = 1.6e-76
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNI 552
R V G ++ TLLG + F+ D F+ I
Sbjct: 1099 RLVKGRIEKTLLGEISEYIEEVFLPDDCFILI 1130
>ZFIN|ZDB-GENE-050208-103 [details] [associations]
symbol:polr3a "polymerase (RNA) III (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
ZFIN:ZDB-GENE-050208-103 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
KO:K03018 GO:GO:0032549 GeneTree:ENSGT00700000104490
PANTHER:PTHR19376:SF15 EMBL:CABZ01084340 EMBL:CABZ01084341
EMBL:CABZ01084342 EMBL:CABZ01084343 EMBL:CABZ01084344
EMBL:CABZ01084345 EMBL:CABZ01084346 IPI:IPI00960980
RefSeq:XP_003199716.1 UniGene:Dr.109694 Ensembl:ENSDART00000105273
GeneID:572258 KEGG:dre:572258 NextBio:20890901 Bgee:E7F5P2
Uniprot:E7F5P2
Length = 1390
Score = 1269 (451.8 bits), Expect = 3.6e-176, Sum P(2) = 3.6e-176
Identities = 280/653 (42%), Positives = 388/653 (59%)
Query: 260 DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
DDLT +L II N+ +++ GA +I E LQ A Y ++EL G P
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPK 335
Query: 320 RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
+ + RLK K+GR RGNL GKRVDFS RTVI+PDP + ID++ VP +A LTYPE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEK 395
Query: 380 VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVER 437
V NIE +++LV GP PG A +I + Q + L+Y ++ L+ G VER
Sbjct: 396 VNKANIELMRKLVRNGPEVHPG---ANFIQQRHMQMKRFLKYGNREKMAQELKFGDVVER 452
Query: 438 HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
H+ DGD VLFNRQPSLHK+SIM H ++ P+ TFR N V +PYNADFDGDEMN+H+PQ+
Sbjct: 453 HMIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQT 512
Query: 498 FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK----DVFMNIL 553
E +AE L LM +V+P++ P++ +QD L G +T +DTF ++ + +IL
Sbjct: 513 EEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRTKACQIVASIL 572
Query: 554 MWWED-FDGKVPQPTILKPRPLWTGKQVFNLII------PKQINLFRTAAWHADNDKGIL 606
+ ++ +P P ILKP LWTGKQ+F+LI+ P NL RT L
Sbjct: 573 VGKDEKIKISLPHPAILKPIRLWTGKQIFSLILKPSKSCPVMANL-RTKGKQYCGKGEDL 631
Query: 607 TAGDTLVRIEKGELLSGTLCKKTLGT-STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
A D+ V I EL+ G++ K TLG+ S ++ +++ + G A + L +L
Sbjct: 632 CANDSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQQEAADAMSRLARLAPVYL 691
Query: 666 LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
FSIGIGD ++ + + I + L+ +PG T E+ E
Sbjct: 692 SNRGFSIGIGDVTPGQGLLKAKQELLDAGYEKCDEYIDALKTGRLQQQPGCTAEETLEAL 751
Query: 726 VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
+ + L+ RD AGS+ + L +SN+ M GSKGSFINISQM ACVGQQ + G R+P
Sbjct: 752 ILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD 811
Query: 786 GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
GF +R+LPHF K P ++GFV +S+ GLTP EFFFH M GREGL+DTAVKT+ETGY+
Sbjct: 812 GFENRSLPHFQKHSKLPAAKGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYM 871
Query: 846 QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
QRRLVK++ED+ +YD TVR+S GD+IQF+YG DG+D +E + + L+ K+
Sbjct: 872 QRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKR 923
Score = 840 (300.8 bits), Expect = 5.3e-124, Sum P(2) = 5.3e-124
Identities = 206/566 (36%), Positives = 308/566 (54%)
Query: 7 YSPAEVA-KVRMVQFGILSPDEIRQMSVVQIE----HGETTERGKPKPGGLSDPRLGTID 61
+ +VA K+ + FG+ S +++RQ + +Q+ + + T KP G+ D R+GT +
Sbjct: 6 FRETDVARKISHICFGMKSSEQMRQQAHIQVVSKNLYSQDTSH-KPLQYGVLDHRMGTSE 64
Query: 62 RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
+ CETC N+A+C GH+G+L+L P FHIG+ K ++ I++ +C CS IL +++ K
Sbjct: 65 KDRPCETCGKNLADCLGHYGYLDLELPCFHIGYFKAIVGILQMICKTCSHILLTKEE-KL 123
Query: 122 KQALKIRNP------KNRLKK-ILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQ 174
+ +R P K LKK I D C+ KT C + + G + L K
Sbjct: 124 QFLDYLRRPGLAYLQKRGLKKKISDKCRKKTVCLNCNAFN--GSVKKCGLLKIIHEKYKS 181
Query: 175 QPKLTIEGMK-MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
K+ + + + + N + E L ++ L VL + +RI D+D LL
Sbjct: 182 TKKVVDPAVSDFLQSFDVAIEHNKEVESLL--TRAQENLNPLVVLNLFRRIPDKDVPLLL 239
Query: 234 LNPKYARP-DWMILQVLX----------XXXXXXXXSDDLTHQLAMIIRHNENLRRQERN 282
+NP+ +P D ++ ++L DDLT +L II N+ +++
Sbjct: 240 MNPESGKPADLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMT 299
Query: 283 GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
GA +I E LQ A Y ++EL G P + + RLK K+GR RGNL G
Sbjct: 300 GAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 343 KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
KRVDFS RTVI+PDP + ID++ VP +A LTYPE V NIE +++LV GP PG
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPG- 417
Query: 403 TGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 460
A +I + Q + L+Y ++ L+ G VERH+ DGD VLFNRQPSLHK+SIM
Sbjct: 418 --ANFIQQRHMQMKRFLKYGNREKMAQELKFGDVVERHMIDGDIVLFNRQPSLHKLSIMA 475
Query: 461 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
H ++ P+ TFR N V +PYNADFDGDEMN+H+PQ+ E +AE L LM +V+P++
Sbjct: 476 HIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEK 546
P++ +QD L G +T +DTF ++
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDR 561
Score = 464 (168.4 bits), Expect = 3.6e-176, Sum P(2) = 3.6e-176
Identities = 120/375 (32%), Positives = 202/375 (53%)
Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
R+T E + +++++ + PG +G + AQSIGEP TQMTL TFH+AGV++ N+T
Sbjct: 1005 RITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNIT 1064
Query: 1105 LGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYD 1164
LGVPR++EIIN +K I TP +S L N + A+ V+ +E T L ++E E +
Sbjct: 1065 LGVPRIKEIINASKNISTPIISANLD--TNDDPDFARLVKGRIEKTLLGEISEYIEEVFL 1122
Query: 1165 PDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKIN 1224
PD T I VK ++ ++I LLR+E+N E V + + + K
Sbjct: 1123 PDD--TFI-----LVK---------LSLDRIR--LLRLEVNAET-VRYSICTSKLRVKPG 1163
Query: 1225 --QEFDDDLTCIFNDDNA-DKLILRIRIMNDEAPKGELND--ESAEDDVFLKKIESNMLT 1279
Q + + C+ +N+ + ++ + + PK + E + + + +
Sbjct: 1164 DVQVHGEAVVCVSPRENSKSSMYYVLQSLKQDLPKVVVQGIPEVSRAVIHIDEQSGKQKF 1223
Query: 1280 EMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVN 1339
++ + G N+ +VM V+ +TTSN+ E+ + LGIEA R +++E++ + G ++
Sbjct: 1224 KLLVEGDNMRSVMATHGVNGSKTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSID 1283
Query: 1340 YRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGV 1399
RH+ +L D M+Y+G ++ ITR G+ + +M SFE+T D L DAA F + D + GV
Sbjct: 1284 RRHVMLLADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGV 1343
Query: 1400 TENIMLGQLAPIGTG 1414
+E I++G IGTG
Sbjct: 1344 SECIIMGIPMNIGTG 1358
Score = 40 (19.1 bits), Expect = 3.0e-79, Sum P(2) = 3.0e-79
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 517 PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
P R V G ++ TLLG + F+ D F+
Sbjct: 1095 PDFARLVKGRIEKTLLGEISEYIEEVFLPDDTFI 1128
>UNIPROTKB|F1NIK7 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045087
"innate immune response" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
IPI:IPI00580235 EMBL:AADN02027942 EMBL:AADN02027940
EMBL:AADN02027941 Ensembl:ENSGALT00000007929 Uniprot:F1NIK7
Length = 1390
Score = 1268 (451.4 bits), Expect = 1.2e-175, Sum P(2) = 1.2e-175
Identities = 281/653 (43%), Positives = 391/653 (59%)
Query: 260 DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
DDLT +L II N+ +++ +GA +I E LQ A Y ++EL G P
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPK 335
Query: 320 RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
+ + RLK K+GR RGNL GKRVDFS RTVI+PDP + ID++ VP +A LT+PE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEK 395
Query: 380 VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVER 437
V NI +++LV GP PG A +I + Q + L+Y ++ L+ G VER
Sbjct: 396 VNKANINFMRKLVRNGPDVHPG---ANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVER 452
Query: 438 HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
HL DGD VLFNRQPSLHK+SIM H ++ P+ TFR N V +PYNADFDGDEMN+H+PQ+
Sbjct: 453 HLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQT 512
Query: 498 FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK----DVFMNIL 553
E +AE L LM +V+P++ P++ +QD L G +T +DTF ++ + +IL
Sbjct: 513 EEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASIL 572
Query: 554 MWWED-FDGKVPQPTILKPRPLWTGKQVFNLII------PKQINLFRTAAWHADNDKGIL 606
+ ++ ++P P ILKP LWTGKQVF+LI+ P + NL RT L
Sbjct: 573 VGKDEKIKVRLPPPAILKPVTLWTGKQVFSLILKPSDDCPVKANL-RTKGKQYCGKGEDL 631
Query: 607 TAGDTLVRIEKGELLSGTLCKKTLGT-STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
D+ V I+ EL+SG++ K TLG+ S ++ +++ + G A + L +L
Sbjct: 632 CYNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYL 691
Query: 666 LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
FSIGIGD ++ + + I+ L+ +PG T E+ E
Sbjct: 692 SNRGFSIGIGDVTPGQGLLKAKYELLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEAL 751
Query: 726 VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
+ + L+ RD AGS+ + L +SN+ M GSKGSFINISQM ACVGQQ + G R+P
Sbjct: 752 ILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD 811
Query: 786 GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
GF +R+LPHF K P ++GFV NS+ GLTP EFFFH M GREGL+DTAVKT+ETGY+
Sbjct: 812 GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYM 871
Query: 846 QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
QRRLVK++ED+ +YD TVR+S GD+IQF+YG DG+D +E + + L+ K+
Sbjct: 872 QRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKR 923
Score = 817 (292.7 bits), Expect = 5.6e-121, Sum P(2) = 5.6e-121
Identities = 204/566 (36%), Positives = 304/566 (53%)
Query: 7 YSPAEVAK-VRMVQFGILSPDEIRQMSVVQIEHGETTERGK---PKPGGLSDPRLGTIDR 62
+ ++VAK + + FG+ SP+E+RQ + +Q+ + P G+ D R+GT ++
Sbjct: 6 FRESDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGTSEK 65
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI-LADEDDHKF 121
CETC N+A+C GH+G+++L P FH+G+ K V+ I++ +C C +I L+ E+ +F
Sbjct: 66 DRPCETCGKNLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEKKQF 125
Query: 122 KQALKIRN----PKNRLKK-ILDACKNKTKCEG-GDEIDVPGQDGEEPL--KKNKGGCGA 173
LK K LKK + + C+ K C G + G + +K K
Sbjct: 126 LDYLKRPGLTYLQKRGLKKKVSEKCRKKNTCPYCGAFNGTVKKCGLLKIIHEKYKTNKKV 185
Query: 174 QQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
P ++ + ++ + N + E L + + L VL + KRI ED LL
Sbjct: 186 VDPIVST----FLQSFETAIEHNKEVEPLLGRAQ--ENLNPLVVLNLFKRIPAEDIPLLL 239
Query: 234 LNPKYARPDWMILQVLX-----------XXXXXXXXSDDLTHQLAMIIRHNENLRRQERN 282
+NP+ +P +IL L DDLT +L II N+ +++ +
Sbjct: 240 MNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRIS 299
Query: 283 GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
GA +I E LQ A Y ++EL G P + + RLK K+GR RGNL G
Sbjct: 300 GAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 343 KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
KRVDFS RTVI+PDP + ID++ VP +A LT+PE V NI +++LV GP PG
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPG- 417
Query: 403 TGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 460
A +I + Q + L+Y ++ L+ G VERHL DGD VLFNRQPSLHK+SIM
Sbjct: 418 --ANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMA 475
Query: 461 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
H ++ P+ TFR N V +PYNADFDGDEMN+H+PQ+ E +AE L LM +V+P++
Sbjct: 476 HIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEK 546
P++ +QD L G +T +DTF ++
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDR 561
Score = 460 (167.0 bits), Expect = 1.2e-175, Sum P(2) = 1.2e-175
Identities = 119/382 (31%), Positives = 204/382 (53%)
Query: 1039 RVLKE-HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 1097
RVL + R+T E + +++++ + PG +G + AQSIGEP TQMTL TFH+AG
Sbjct: 998 RVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057
Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE 1157
V++ N+TLGVPR++EIIN +K I TP ++ L + + A+ V+ +E T L ++E
Sbjct: 1058 VASMNITLGVPRIKEIINASKAISTPIITAQLDK--DDDPDFARLVKGRIEKTLLGEISE 1115
Query: 1158 ATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMA 1217
E + PD +++ +E ++ LLR+E+N E V + ++
Sbjct: 1116 YIEEVFLPDDCFILVKLSLERIR------------------LLRLEVNAET-VRYSICIS 1156
Query: 1218 AVAEKINQE--FDDDLTCIFNDDNA-DKLILRIRIMNDEAPKGELND--ESAEDDVFLKK 1272
+ K + + C+ +N+ + ++ + +E PK + E + + + +
Sbjct: 1157 KLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQSLKEELPKVVVQGIPEVSRAVIHIDE 1216
Query: 1273 IESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
++ + G NL AVM V +T+SN+ E+ + LGIEA R +++E++ +
Sbjct: 1217 QSGKEKYKLLVEGDNLRAVMATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMV 1276
Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
G ++ RH+ +L D MTY+G ++ ITR G+ + +M SFE+T D L DAA F +
Sbjct: 1277 NHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQ 1336
Query: 1393 SDYLRGVTENIMLGQLAPIGTG 1414
D + GV+E I++G IGTG
Sbjct: 1337 KDSVCGVSECIIMGIPMNIGTG 1358
Score = 56 (24.8 bits), Expect = 1.3e-77, Sum P(3) = 1.3e-77
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 708 KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKA-MVTAGSKGS 762
+SL+ E + +++ +V++ + +++G K L E +NL+A M T G KG+
Sbjct: 1190 QSLKEELPKVVVQGIP-EVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGT 1244
Score = 39 (18.8 bits), Expect = 1.3e-77, Sum P(3) = 1.3e-77
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 517 PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
P R V G ++ TLLG + F+ D F+
Sbjct: 1095 PDFARLVKGRIEKTLLGEISEYIEEVFLPDDCFI 1128
>POMBASE|SPBC651.08c [details] [associations]
symbol:rpc1 "DNA-directed RNA polymerase III complex
large subunit Rpc1 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISO] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
PomBase:SPBC651.08c GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 KO:K03018 OrthoDB:EOG4X3M8C eggNOG:COG0086
GO:GO:0032549 HOGENOM:HOG000222974 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:DQ156227 PIR:T40607 RefSeq:NP_595506.1
ProteinModelPortal:O94666 STRING:O94666 EnsemblFungi:SPBC651.08c.1
GeneID:2541094 KEGG:spo:SPBC651.08c NextBio:20802207 Uniprot:O94666
Length = 1405
Score = 1282 (456.3 bits), Expect = 2.5e-175, Sum P(2) = 2.5e-175
Identities = 278/681 (40%), Positives = 405/681 (59%)
Query: 260 DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
DDLT ++ II + +R G P + E + +Q IA Y ++E+PG R +
Sbjct: 271 DDLTVKITEIIWTSSLIRAALSKGTPISNLMEQWEFMQLSIAMYINSEMPGL-RPSDMPS 329
Query: 320 RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
+PI+ C RLK K+GR RGNL GKRVDFS RTVI+PDP + IDQ+ VP+ IA LT+PE
Sbjct: 330 KPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPER 389
Query: 380 VTPYNIERLKELVEYGPHPPPGKTGAKYII-RDDGQRLDLRYLKKSS-DHHLELGYKVER 437
VT N + L++ + GP PG A Y+I R+ G + LR+ ++ L++G VER
Sbjct: 390 VTTQNKKHLQDCIRNGPDVHPG---ANYVIDRESGFKRFLRFGNRNRIADDLKIGDIVER 446
Query: 438 HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
HL+D D VLFNRQPSLHK+SIM H +K+ P+ T R N V PYNADFDGDEMN+HVPQ+
Sbjct: 447 HLHDNDVVLFNRQPSLHKLSIMAHLVKVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQT 506
Query: 498 FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 557
E + E LELM + +VSP++ P++ QD + ++ +DTF+++ NI +
Sbjct: 507 EEAKTEALELMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMM 566
Query: 558 DFDGKV--PQPTILKPRPLWTGKQVFNLII-PKQ-----INL-FRTAAWHADNDKGI-LT 607
D + P P I+KPR LWTGKQVF +++ P + +NL +T ++ K +
Sbjct: 567 DASTHIDLPPPAIIKPRCLWTGKQVFTVLMKPNRFSKVLVNLDAKTRSFSRIKSKTPEMC 626
Query: 608 AGDTLVRIEKGELLSGTLCKKTLGTST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 666
D + I E+++G + K +G SL +VI + G A + + + +L
Sbjct: 627 PKDGYLMIRNSEIIAGVVDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLG 686
Query: 667 QNAFSIGIGDTIADAKTMETINDT-ISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
FSIGI D + K++ + + ++KA + I Q LE +PG + E K
Sbjct: 687 NRGFSIGIED-VQPGKSLSSQKEILVNKAYATSDDFIMQYAKGILECQPGMDQEATLEAK 745
Query: 726 VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
++ L+ RD+ G L +N+ M T GSKGS IN+SQM ACVGQQ + GKR+P
Sbjct: 746 ISSTLSKVRDDVGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPD 805
Query: 786 GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
GF DR+LPHF K+ P ++GFV NS+ GLTP EF FHA+ GREGL+DTAVKT+ETGY+
Sbjct: 806 GFQDRSLPHFHKNSKHPLAKGFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYM 865
Query: 846 QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA- 904
RRL+K++ED+ YDGTVR+S DV+QF+YG+DG+D ++E +++ K++
Sbjct: 866 SRRLMKSLEDLSSAYDGTVRSSNSDVVQFVYGDDGLDPTYMEGDG-QAVEFKRTWIHSVN 924
Query: 905 FRFEMDEENWNPNYMLQEYID 925
++ + P Y + +Y++
Sbjct: 925 LNYDRHDSAMLP-YEIIDYVN 944
Score = 977 (349.0 bits), Expect = 6.9e-138, Sum P(2) = 6.9e-138
Identities = 225/604 (37%), Positives = 342/604 (56%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGET---TERGKPKPGGLSDPRLGTIDRKMKCETCT 70
+++ +QFGI P+E + V++ + T+R + G L D +GT ++++ C TC
Sbjct: 12 RIKHLQFGINGPEEFVKDGTVEVSRRDLYTMTDRSPAEHGAL-DLHMGTSNKQINCATCG 70
Query: 71 ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKIL-ADEDDHKFKQALK--- 126
+MA+C GHFG+++LA P+FHIG+ K L+I++++C +CS +L +D++ +F + L+
Sbjct: 71 ESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQEKRQFLKDLRRPG 130
Query: 127 IRNPKNR--LKKILDACKNKTKCEGGDEID-VPGQDGEEPLK--------KNKGGCGAQQ 175
I N + K+I D CK +C D + V + G PLK K +
Sbjct: 131 IDNLRRSQICKRINDHCKKMRRCSKCDAMQGVVKKAG--PLKIIHERFRYVRKSQDDEEN 188
Query: 176 PKLTI-EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGL 234
+ + E +K I E K K D L +VL + K+I+ DC+LLG+
Sbjct: 189 FRHSFDEALKTIPELKMHLSKAHDD------------LNPLKVLNLFKQITPVDCELLGM 236
Query: 235 NPKYARPDWMILQVL---------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAP 285
+P++ RP+ ++ + + DDLT ++ II + +R G P
Sbjct: 237 DPEHGRPENLLWRYVPAPPVCIRPSVAQEGATTEDDLTVKITEIIWTSSLIRAALSKGTP 296
Query: 286 AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
+ E + +Q IA Y ++E+PG R + +PI+ C RLK K+GR RGNL GKRV
Sbjct: 297 ISNLMEQWEFMQLSIAMYINSEMPGL-RPSDMPSKPIRGFCQRLKGKQGRFRGNLSGKRV 355
Query: 346 DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
DFS RTVI+PDP + IDQ+ VP+ IA LT+PE VT N + L++ + GP PG A
Sbjct: 356 DFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPG---A 412
Query: 406 KYII-RDDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
Y+I R+ G + LR+ ++ L++G VERHL+D D VLFNRQPSLHK+SIM H +
Sbjct: 413 NYVIDRESGFKRFLRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKLSIMAHLV 472
Query: 464 KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
K+ P+ T R N V PYNADFDGDEMN+HVPQ+ E + E LELM + +VSP++ P+
Sbjct: 473 KVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVSPRNGEPI 532
Query: 524 MGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV--PQPTILKPRPLWTGKQVF 581
+ QD + ++ +DTF+++ NI + D + P P I+KPR LWTGKQVF
Sbjct: 533 IAATQDFITAAYLLSLKDTFLDRKSISNICCYMMDASTHIDLPPPAIIKPRCLWTGKQVF 592
Query: 582 NLII 585
+++
Sbjct: 593 TVLM 596
Score = 443 (161.0 bits), Expect = 2.5e-175, Sum P(2) = 2.5e-175
Identities = 124/371 (33%), Positives = 202/371 (54%)
Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
R+T + + +++++ V PG +G + AQSIGEP TQMTL TFH+AGV+A+ T
Sbjct: 1019 RVTEKQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAAQT-T 1077
Query: 1105 LGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCALEYTTLRSVTEATEVWY 1163
LGVPR++EIIN AK I TP ++ L +N ER A+ V+ +E T L+ VT E Y
Sbjct: 1078 LGVPRIKEIINAAKTISTPIITGQL---INDRDERSARVVKGRIEKTYLKDVTSYIEEVY 1134
Query: 1164 DPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEK 1222
P I+ + + + K ++ DIA + L+I ++++ V+ L V
Sbjct: 1135 GPVTTYLSIQVNFDTISKLQLDITLADIAAAIWNTPKLKIP-SQQVTVNNTLQQIHVHTS 1193
Query: 1223 INQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMA 1282
+ + + T ++ +L R++ D G + V + ES + E+
Sbjct: 1194 SDGKSSE--TEVYY-----RLQTYKRVLPDVVVAGI---PTINRSVINQ--ESGKI-ELF 1240
Query: 1283 LRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRH 1342
+ G L AVM E + +T++NH++E+ +VLGIEA R +++ E+ ++ G V+ RH
Sbjct: 1241 MEGTGLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRH 1300
Query: 1343 LAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTEN 1402
+ +L D MT +G ++ ITR G+ + + SFE+T D L +AA D + G++E
Sbjct: 1301 IMLLGDVMTCKGEVLGITRFGVAKMKDSVLALASFEKTTDHLFNAAARFAKDSIEGISEC 1360
Query: 1403 IMLGQLAPIGT 1413
I+LG+LAPIGT
Sbjct: 1361 IVLGKLAPIGT 1371
Score = 41 (19.5 bits), Expect = 7.6e-133, Sum P(2) = 7.6e-133
Identities = 30/134 (22%), Positives = 57/134 (42%)
Query: 1141 KNVQCALEYTTLRSVTEATEVWYDPDPMG-TIIEED---VEFVKSYYEMPD--EDIAPEK 1194
+++ A + T S ++ + Y D + T +E D VEF +++ + D
Sbjct: 874 EDLSSAYDGTVRSSNSDVVQFVYGDDGLDPTYMEGDGQAVEFKRTWIHSVNLNYDRHDSA 933
Query: 1195 ISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEA 1254
+ P+ + +NR + K L+ N++F + + F +N K + +R D A
Sbjct: 934 MLPYEIIDYVNRALDDPKFLT------NCNRDFIETIRT-FVIENIAKYLASVRERRDLA 986
Query: 1255 PKGELNDESAEDDV 1268
P E D DD+
Sbjct: 987 PMLEEPDMDDLDDM 1000
>UNIPROTKB|Q5ZL98 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 HOVERGEN:HBG004339
CTD:11128 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
PANTHER:PTHR19376:SF15 EMBL:AJ719836 IPI:IPI00580235
RefSeq:NP_001006500.1 UniGene:Gga.11367 ProteinModelPortal:Q5ZL98
STRING:Q5ZL98 PRIDE:Q5ZL98 GeneID:423727 KEGG:gga:423727
InParanoid:Q5ZL98 NextBio:20826153 Uniprot:Q5ZL98
Length = 1390
Score = 1262 (449.3 bits), Expect = 5.2e-175, Sum P(2) = 5.2e-175
Identities = 280/653 (42%), Positives = 390/653 (59%)
Query: 260 DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
DDLT +L II N+ +++ +GA +I E LQ A Y ++EL G P
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPK 335
Query: 320 RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
+ + RLK K+GR RGNL GKRVDFS RTVI+PDP + ID++ VP +A LT+PE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEK 395
Query: 380 VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVER 437
V NI +++LV GP PG A +I + Q + L+Y ++ L+ G VER
Sbjct: 396 VNKANINFMRKLVRNGPDVHPG---ANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVER 452
Query: 438 HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
HL DGD VLFNRQPSLHK+SIM H ++ P+ TFR N V +PYNADFDGDEMN+H+PQ+
Sbjct: 453 HLIDGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQT 512
Query: 498 FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK----DVFMNIL 553
E +AE L LM +V+P++ P++ +QD L G +T +DTF ++ + +IL
Sbjct: 513 EEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASIL 572
Query: 554 MWWED-FDGKVPQPTILKPRPLWTGKQVFNLII------PKQINLFRTAAWHADNDKGIL 606
+ ++ ++P P ILKP LWTGKQVF+ I+ P + NL RT L
Sbjct: 573 VGKDEKIKVRLPPPAILKPVTLWTGKQVFSSILKPSDDCPVKANL-RTKGKQYCGKGEDL 631
Query: 607 TAGDTLVRIEKGELLSGTLCKKTLGT-STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
D+ V I+ EL+SG++ K TLG+ S ++ +++ + G A + L +L
Sbjct: 632 CYNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYL 691
Query: 666 LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
FSIGIGD ++ + + I+ L+ +PG T E+ E
Sbjct: 692 SNRGFSIGIGDVTPGQGLLKAKYELLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEAL 751
Query: 726 VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
+ + L+ RD AGS+ + L +SN+ M GSKGSFINISQM ACVGQQ + G R+P
Sbjct: 752 ILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPD 811
Query: 786 GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
GF +R+LPHF K P ++GFV NS+ GLTP EFFFH M GREGL+DTAVKT+ETGY+
Sbjct: 812 GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYM 871
Query: 846 QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
QRRLVK++ED+ +YD TVR+S GD+IQF+YG DG+D +E + + L+ K+
Sbjct: 872 QRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKR 923
Score = 817 (292.7 bits), Expect = 5.6e-121, Sum P(2) = 5.6e-121
Identities = 204/566 (36%), Positives = 304/566 (53%)
Query: 7 YSPAEVAK-VRMVQFGILSPDEIRQMSVVQIEHGETTERGK---PKPGGLSDPRLGTIDR 62
+ ++VAK + + FG+ SP+E+RQ + +Q+ + P G+ D R+GT ++
Sbjct: 6 FRESDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGTSEK 65
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI-LADEDDHKF 121
CETC N+A+C GH+G+++L P FH+G+ K V+ I++ +C C +I L+ E+ +F
Sbjct: 66 DRPCETCGKNLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEKKQF 125
Query: 122 KQALKIRN----PKNRLKK-ILDACKNKTKCEG-GDEIDVPGQDGEEPL--KKNKGGCGA 173
LK K LKK + + C+ K C G + G + +K K
Sbjct: 126 LDYLKRPGLTYLQKRGLKKKVSEKCRKKNTCPYCGAFNGTVKKCGLLKIIHEKYKTNKKV 185
Query: 174 QQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
P ++ + ++ + N + E L + + L VL + KRI ED LL
Sbjct: 186 VDPIVST----FLQSFETAIEHNKEVEPLLGRAQ--ENLNPLVVLNLFKRIPAEDIPLLL 239
Query: 234 LNPKYARPDWMILQVLX-----------XXXXXXXXSDDLTHQLAMIIRHNENLRRQERN 282
+NP+ +P +IL L DDLT +L II N+ +++ +
Sbjct: 240 MNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRIS 299
Query: 283 GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
GA +I E LQ A Y ++EL G P + + RLK K+GR RGNL G
Sbjct: 300 GAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 343 KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
KRVDFS RTVI+PDP + ID++ VP +A LT+PE V NI +++LV GP PG
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPG- 417
Query: 403 TGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 460
A +I + Q + L+Y ++ L+ G VERHL DGD VLFNRQPSLHK+SIM
Sbjct: 418 --ANFIQQRHTQMKRFLKYGNREKMAQELKFGDIVERHLIDGDIVLFNRQPSLHKLSIMA 475
Query: 461 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
H ++ P+ TFR N V +PYNADFDGDEMN+H+PQ+ E +AE L LM +V+P++
Sbjct: 476 HIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEK 546
P++ +QD L G +T +DTF ++
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDR 561
Score = 460 (167.0 bits), Expect = 5.2e-175, Sum P(2) = 5.2e-175
Identities = 119/382 (31%), Positives = 204/382 (53%)
Query: 1039 RVLKE-HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 1097
RVL + R+T E + +++++ + PG +G + AQSIGEP TQMTL TFH+AG
Sbjct: 998 RVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057
Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE 1157
V++ N+TLGVPR++EIIN +K I TP ++ L + + A+ V+ +E T L ++E
Sbjct: 1058 VASMNITLGVPRIKEIINASKAISTPIITAQLDK--DDDPDFARLVKGRIEKTLLGEISE 1115
Query: 1158 ATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMA 1217
E + PD +++ +E ++ LLR+E+N E V + ++
Sbjct: 1116 YIEEVFLPDDCFILVKLSLERIR------------------LLRLEVNAET-VRYSICIS 1156
Query: 1218 AVAEKINQE--FDDDLTCIFNDDNA-DKLILRIRIMNDEAPKGELND--ESAEDDVFLKK 1272
+ K + + C+ +N+ + ++ + +E PK + E + + + +
Sbjct: 1157 KLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQSLKEELPKVVVQGIPEVSRAVIHIDE 1216
Query: 1273 IESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
++ + G NL AVM V +T+SN+ E+ + LGIEA R +++E++ +
Sbjct: 1217 QSGKEKYKLLVEGDNLRAVMATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMV 1276
Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
G ++ RH+ +L D MTY+G ++ ITR G+ + +M SFE+T D L DAA F +
Sbjct: 1277 NHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQ 1336
Query: 1393 SDYLRGVTENIMLGQLAPIGTG 1414
D + GV+E I++G IGTG
Sbjct: 1337 KDSVCGVSECIIMGIPMNIGTG 1358
Score = 56 (24.8 bits), Expect = 1.3e-77, Sum P(3) = 1.3e-77
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 708 KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKA-MVTAGSKGS 762
+SL+ E + +++ +V++ + +++G K L E +NL+A M T G KG+
Sbjct: 1190 QSLKEELPKVVVQGIP-EVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGT 1244
Score = 39 (18.8 bits), Expect = 1.3e-77, Sum P(3) = 1.3e-77
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 517 PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
P R V G ++ TLLG + F+ D F+
Sbjct: 1095 PDFARLVKGRIEKTLLGEISEYIEEVFLPDDCFI 1128
>UNIPROTKB|E9PTB6 [details] [associations]
symbol:Polr3a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0032728
"positive regulation of interferon-beta production" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:1305574 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
IPI:IPI00766228 PRIDE:E9PTB6 Ensembl:ENSRNOT00000013501
Uniprot:E9PTB6
Length = 1342
Score = 1279 (455.3 bits), Expect = 3.6e-174, Sum P(2) = 3.6e-174
Identities = 279/653 (42%), Positives = 394/653 (60%)
Query: 260 DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
DDLT +L II N+ +++ +GA +I E LQ A Y ++EL G P
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPK 335
Query: 320 RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
+ + RLK K+GR RGNL GKRVDFS RTVI+PDP + ID++ VP +A LT+PE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEK 395
Query: 380 VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVER 437
V NI L++LV GP PG A +I + Q + L+Y ++ L+ G VER
Sbjct: 396 VNKANINFLRKLVRNGPDVHPG---ANFIQQRHMQMKRFLKYGNREKMAQELKFGDIVER 452
Query: 438 HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
HL DGD VLFNRQPSLHK+SIM H K+ P+ TFR N V +PYNADFDGDEMN+H+PQ+
Sbjct: 453 HLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQT 512
Query: 498 FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK----DVFMNIL 553
E +AE L LM +V+P++ P++ +QD L G +T +DTF ++ + +IL
Sbjct: 513 EEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASIL 572
Query: 554 MWWED-FDGKVPQPTILKPRPLWTGKQVFNLII------PKQINLFRTAAWHADNDKGIL 606
+ ++ ++P PTILKP LWTGKQ+F++I+ P + NL + + +
Sbjct: 573 VGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLC 632
Query: 607 TAGDTLVRIEKGELLSGTLCKKTLGT-STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
T D+ V I+ EL+ G++ K TLG+ S ++ +++ + G + A + L +L
Sbjct: 633 T-NDSYVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYL 691
Query: 666 LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
FSIGIGD ++ + ++ I+ L+ +PG T E+ E
Sbjct: 692 SNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEAL 751
Query: 726 VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
+ + L+ RD AGS+ + L +SN+ M GSKGSFINISQM ACVGQQ + G R+P
Sbjct: 752 ILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPD 811
Query: 786 GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
GF +R+LPHF K P ++GFV NS+ GLTP EFFFH M GREGL+DTAVKT+ETGY+
Sbjct: 812 GFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYM 871
Query: 846 QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
QRRLVK++ED+ +YD TVR+S GD+IQF+YG DG+D +E + + L+ K+
Sbjct: 872 QRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKR 923
Score = 824 (295.1 bits), Expect = 2.7e-119, Sum P(2) = 2.7e-119
Identities = 207/566 (36%), Positives = 303/566 (53%)
Query: 7 YSPAEVAK-VRMVQFGILSPDEIRQMSVVQIEHGETTERGK---PKPGGLSDPRLGTIDR 62
+ +VAK + + FG+ SP+E+RQ + +Q+ + P G+ D R+GT ++
Sbjct: 6 FRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGTSEK 65
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI-LADEDDHKF 121
CETC N+A+C GH+G+++L P FH+G+ + V+ I++ +C C I L+ E+ +F
Sbjct: 66 DRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKQQF 125
Query: 122 KQALKIRN----PKNRLKK-ILDACKNKTKCEG-GDEIDVPGQDGEEPL--KKNKGGCGA 173
LK K LKK I D C+ K+ C G + G + +K K
Sbjct: 126 LDFLKRPGLTYLQKRGLKKKISDKCRKKSTCHYCGAFNGTVKKCGLLKIIHEKYKTNKKV 185
Query: 174 QQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
P ++ + ++ + N + E L + + L VL + KRI ED LL
Sbjct: 186 VDPIVS----NFLQSFETAIEHNKEVEPLLGRAQ--ENLNPLVVLNLFKRIPAEDVPLLL 239
Query: 234 LNPKYARPDWMILQVLX-----------XXXXXXXXSDDLTHQLAMIIRHNENLRRQERN 282
+NP+ +P +IL L DDLT +L II N+ +++ +
Sbjct: 240 MNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRIS 299
Query: 283 GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
GA +I E LQ A Y ++EL G P + + RLK K+GR RGNL G
Sbjct: 300 GAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 343 KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
KRVDFS RTVI+PDP + ID++ VP +A LT+PE V NI L++LV GP PG
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPG- 417
Query: 403 TGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 460
A +I + Q + L+Y ++ L+ G VERHL DGD VLFNRQPSLHK+SIM
Sbjct: 418 --ANFIQQRHMQMKRFLKYGNREKMAQELKFGDIVERHLIDGDVVLFNRQPSLHKLSIMA 475
Query: 461 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
H K+ P+ TFR N V +PYNADFDGDEMN+H+PQ+ E +AE L LM +V+P++
Sbjct: 476 HLAKVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEK 546
P++ +QD L G +T +DTF ++
Sbjct: 536 EPLIAAIQDFLTGAYLLTLKDTFFDR 561
Score = 435 (158.2 bits), Expect = 3.6e-174, Sum P(2) = 3.6e-174
Identities = 115/362 (31%), Positives = 195/362 (53%)
Query: 1039 RVLKE-HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 1097
RVL + R+TR E + +++++ + PG +G + AQSIGEP TQMTL TFH+AG
Sbjct: 998 RVLYQLDRITRTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057
Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE 1157
V++ N+TLGVPR++EIIN +K I TP ++ L ++ + A+ V+ +E T L ++E
Sbjct: 1058 VASMNITLGVPRIKEIINASKAISTPIITAQLD--MDDDADYARLVKGRIEKTLLGEISE 1115
Query: 1158 ATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMA 1217
E + PD +++ +E ++ + + I LR++ ++ V + ++
Sbjct: 1116 YIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICTSKLRVKPG-DVAVHGE-AVV 1173
Query: 1218 AVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELN-DESAEDDVFLKKIESN 1276
V + N + F ++ K++++ I E + ++ DE + + F
Sbjct: 1174 CVTPRENSKSSMYYVLQFLKEDLPKVVVQ-GI--PEVSRAVIHIDEQSGKEKF------K 1224
Query: 1277 MLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336
+L E G NL AVM V RTTSN+ E+ + LGIEA R +++E++ + G
Sbjct: 1225 LLVE----GDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGM 1280
Query: 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYL 1396
++ RH+ +L D MTY+G ++ ITR G+ + +M SFE+T D L DAA F + D +
Sbjct: 1281 SIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSV 1340
Query: 1397 RG 1398
G
Sbjct: 1341 CG 1342
Score = 49 (22.3 bits), Expect = 1.5e-78, Sum P(2) = 1.5e-78
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 735 DEAGSSAQKSLSESNNLKA-MVTAGSKGS 762
+++G K L E +NL+A M T G KG+
Sbjct: 1216 EQSGKEKFKLLVEGDNLRAVMATHGVKGT 1244
Score = 38 (18.4 bits), Expect = 1.1e-34, Sum P(2) = 1.1e-34
Identities = 13/42 (30%), Positives = 20/42 (47%)
Query: 559 FDGKVPQPTILK--PRPLWTGKQVFNLIIPKQINLFRTAAWH 598
F+G V + +LK T K+V + I+ + F TA H
Sbjct: 162 FNGTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEH 203
>FB|FBgn0030687 [details] [associations]
symbol:CG17209 species:7227 "Drosophila melanogaster"
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
GO:GO:0032549 GeneTree:ENSGT00700000104490 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:NP_001096987.2 UniGene:Dm.14839
ProteinModelPortal:A8JUY3 SMR:A8JUY3 STRING:A8JUY3
EnsemblMetazoa:FBtr0300811 GeneID:32524 KEGG:dme:Dmel_CG17209
FlyBase:FBgn0030687 OrthoDB:EOG4BNZSM PhylomeDB:A8JUY3
GenomeRNAi:32524 NextBio:778916 Bgee:A8JUY3 Uniprot:A8JUY3
Length = 1383
Score = 1253 (446.1 bits), Expect = 6.7e-173, Sum P(2) = 6.7e-173
Identities = 272/644 (42%), Positives = 384/644 (59%)
Query: 260 DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
DDLT + + I+ N+ ++R G +I E LQ H+A YF +E+ G P
Sbjct: 276 DDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLHVALYFHSEISGIP-INMAPK 334
Query: 320 RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
+ + I RLK K+GR R NL GKRVDFS RTVI+PDP + I+Q+GVP +A LTYPE
Sbjct: 335 KTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVISPDPNLMINQVGVPVRVAKILTYPER 394
Query: 380 VTPYNIERLKELVEYGPHPPPGKTGAKYII-RDDGQRLDLRYLKKSS-DHHLELGYKVER 437
V P NI ++ELV GP PG A Y+ R + L Y + L+ G VER
Sbjct: 395 VNPANIRHMRELVRNGPSMHPG---ANYVQQRGSSFKKYLAYGNREKVAQELKCGDVVER 451
Query: 438 HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
HL DGD VLFNRQPSLHKMSIM HR K+ P TFR N +PYNADFDGDEMN+H+PQ+
Sbjct: 452 HLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFDGDEMNLHLPQT 511
Query: 498 FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW- 556
E RAE L LM +V+P++ ++ QD + G +T+++ F+ K+ M + +
Sbjct: 512 EEARAEALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQLAACFL 571
Query: 557 --ED--FDGKVPQPTILKPRPLWTGKQVFNLII-PK-----QINLFRTAAWHADNDKGIL 606
ED K+P P +LKPR LWTGKQ+F+L++ P ++N+ + N L
Sbjct: 572 ANEDSTMHIKLPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYTRNKD--L 629
Query: 607 TAGDTLVRIEKGELLSGTLCKKTLGTSTGSLI-HVIWEEVGPDAARKFLGHTQWLVNYWL 665
+ D+ + I EL+ G + K T+G+ T I +++ + G A K + + +Y+L
Sbjct: 630 CSNDSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFL 689
Query: 666 LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
FS GI D K ++ ++ I+ + +L+ +PG T E+ E+
Sbjct: 690 QNRGFSFGISDVTPSKKLLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESV 749
Query: 726 VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
+ + L+ R++A + L +N+ M +GSKGS INISQM ACVGQQ + GKR+P
Sbjct: 750 MLRELSAIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPN 809
Query: 786 GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
GF +R LPHF + P +RGFV+NS+ GLTP EFFFH M GREGL+DTAVKT+ETGY+
Sbjct: 810 GFENRALPHFERHSAIPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYL 869
Query: 846 QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
QRRLVK +ED++V YDGTVRN++ +++ +YG DG+D V +E++
Sbjct: 870 QRRLVKCLEDLVVHYDGTVRNAVNEMVDTIYGGDGLDPVSMETR 913
Score = 822 (294.4 bits), Expect = 2.1e-120, Sum P(2) = 2.1e-120
Identities = 207/561 (36%), Positives = 294/561 (52%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTE-RGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
K+ VQFGI DEI+Q ++V+I + + +P P G+ D R+G + CETC
Sbjct: 14 KISHVQFGISGADEIQQEALVRIISKNLYQAQRQPVPYGVLDRRMGISTKDAMCETCGQG 73
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP-- 130
+ EC GHFG+L+LA P+FHIG ++ ++I++ +C C+ ++ +D + + K+ NP
Sbjct: 74 LNECIGHFGYLDLALPVFHIGHFRSTINILQMICKVCAHVMLKPEDRQLYEK-KLHNPNF 132
Query: 131 ----KNRLK-KILDACKNKTKCEGGDEIDVPGQDGEEPLK-KNKGGCGAQQPKLTIEGMK 184
K L ++L K TKC + + G LK + G + L M
Sbjct: 133 SYLGKKALHVQMLAKAKKVTKCPHCGSPNGGVKKGPGLLKILHDPYKGRKMDSLFTSNMN 192
Query: 185 MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGL-----NPKY- 238
E + N D + LT VL + ++I D LLG+ +PK+
Sbjct: 193 ---EMLRSTQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHL 249
Query: 239 --AR---PDWMILQVLXXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
R P I + DDLT + + I+ N+ ++R G +I E
Sbjct: 250 IVTRVFVPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDW 309
Query: 294 QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
LQ H+A YF +E+ G P + + I RLK K+GR R NL GKRVDFS RTVI
Sbjct: 310 DFLQLHVALYFHSEISGIP-INMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFSGRTVI 368
Query: 354 TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII-RDD 412
+PDP + I+Q+GVP +A LTYPE V P NI ++ELV GP PG A Y+ R
Sbjct: 369 SPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPG---ANYVQQRGS 425
Query: 413 GQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
+ L Y + L+ G VERHL DGD VLFNRQPSLHKMSIM HR K+ P TF
Sbjct: 426 SFKKYLAYGNREKVAQELKCGDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKVQPQRTF 485
Query: 472 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
R N +PYNADFDGDEMN+H+PQ+ E RAE L LM +V+P++ ++ QD +
Sbjct: 486 RFNECACTPYNADFDGDEMNLHLPQTEEARAEALILMGNQSNLVTPKNGEILIAATQDFI 545
Query: 532 LGCRKITKRDTFIEKDVFMNI 552
G +T+++ F+ K+ M +
Sbjct: 546 TGGYLLTQKEVFLTKEEAMQL 566
Score = 449 (163.1 bits), Expect = 6.7e-173, Sum P(2) = 6.7e-173
Identities = 122/369 (33%), Positives = 186/369 (50%)
Query: 1046 LTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1105
LT E + I R+ +++ PG +G +AAQSIGEP TQMTL TFH+AGV++ N+T
Sbjct: 998 LTTEQLLQFVRRINDRYNRAVTEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITQ 1057
Query: 1106 GVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDP 1165
GVPR+ EIIN K I TP ++ L+ +S E A+ V+ +E TTL ++ EV P
Sbjct: 1058 GVPRIVEIINATKTISTPIITAELE-NCHSM-EFARQVKARIEKTTLAELSSYVEVVCGP 1115
Query: 1166 DPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQ 1225
I D+ +K D D I +R+ + V+ S + + ++
Sbjct: 1116 YSCYLAIGVDMARIKLLGLHIDLDTIVFSILKSRMRV---KPTQVEVVASQSRIVVRVEA 1172
Query: 1226 EFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG 1285
+ NA+ L + + N G N A + + ++ + G
Sbjct: 1173 TRTSTI-------NAELARLALSLQN-VVVAGLPNINRAV--IAVDDARQPPTYKLCIEG 1222
Query: 1286 VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAI 1345
L V+ V +RT SN++ EI + LGIEA R ++ E+ V+ G V++RH+ +
Sbjct: 1223 YGLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIML 1282
Query: 1346 LCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIML 1405
L MT RG ++ ITRHG+ + SFE+T D L DAA + ++D + GV+E I+L
Sbjct: 1283 LASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIIL 1342
Query: 1406 GQLAPIGTG 1414
G A IGTG
Sbjct: 1343 GMPACIGTG 1351
Score = 40 (19.1 bits), Expect = 2.4e-36, Sum P(2) = 2.4e-36
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 783 IPFGFVDRTLPHFTKD 798
+P+G +DR + TKD
Sbjct: 49 VPYGVLDRRMGISTKD 64
Score = 37 (18.1 bits), Expect = 4.9e-36, Sum P(2) = 4.9e-36
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 210 QTLTAERVLGVLKRISD 226
+ LT E++L ++RI+D
Sbjct: 996 ECLTTEQLLQFVRRIND 1012
>UNIPROTKB|Q6NX41 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AC113189 GO:GO:0003899 IPI:IPI00031627
UniGene:Hs.270017 HGNC:HGNC:9187 ChiTaRS:POLR2A EMBL:BC067295
SMR:Q6NX41 STRING:Q6NX41 Ensembl:ENST00000572844 UCSC:uc002ghe.3
HOVERGEN:HBG097653 Uniprot:Q6NX41
Length = 566
Score = 1648 (585.2 bits), Expect = 1.7e-169, P = 1.7e-169
Identities = 323/559 (57%), Positives = 410/559 (73%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S + ++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +
Sbjct: 11 SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
C+TC NM ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L
Sbjct: 71 CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130
Query: 126 -KIRN-PKNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPK 177
K + PK RL + D CK K CEGG+E+D V +G+E L K KG GCG QP+
Sbjct: 131 AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190
Query: 178 LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
+ G+++ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+
Sbjct: 191 IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 241
Query: 238 YARPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
YARP+WMI+ VL DDLTH+LA I++ N LRR E+NGA AH
Sbjct: 242 YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 301
Query: 288 IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+I+E +LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
SARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKY
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKY 418
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
IIRD+G R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P
Sbjct: 419 IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 478
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIV
Sbjct: 479 WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 538
Query: 528 QDTLLGCRKITKRDTFIEK 546
QDTL RK TKRD F+E+
Sbjct: 539 QDTLTAVRKFTKRDVFLER 557
>UNIPROTKB|E2QXD8 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
EMBL:AAEX03002853 Ensembl:ENSCAFT00000024699 Uniprot:E2QXD8
Length = 1376
Score = 1269 (451.8 bits), Expect = 2.5e-167, Sum P(3) = 2.5e-167
Identities = 282/656 (42%), Positives = 394/656 (60%)
Query: 260 DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
DDLT +L II N+ +++ +GA +I E LQ A Y ++EL G P
Sbjct: 277 DDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPK 335
Query: 320 RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
+ + RLK K+GR RGNL GKRVDFS RTVI+PDP + ID++ VP +A LT+PE
Sbjct: 336 KWTRGFVQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEK 395
Query: 380 VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVER 437
V NI L++LV GP PG A +I + Q + L+Y ++ L+ G VER
Sbjct: 396 VNKANINFLRKLVRNGPEVHPG---ANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVER 452
Query: 438 HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
HL DGD VLFNRQPSLHK+SIM H K+ P+ TFR N V +PYNADFDGDEMN+H+PQ+
Sbjct: 453 HLIDGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQT 512
Query: 498 FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL---LGCRKITKRDTFIEK----DVFM 550
E +AE L LM +V+P++ P++ +QD L +G +T +DTF ++ +
Sbjct: 513 EEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTAFVGAYLLTLKDTFFDRAKACQIIA 572
Query: 551 NILMWWED-FDGKVPQPTILKPRPLWTGKQVFNLII------PKQINLFRTAAWHADNDK 603
+IL+ ++ +P PTILKP LWTGKQ+F++I+ P + NL RT
Sbjct: 573 SILVGKDEKIKVHLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANL-RTKGKQYCGKG 631
Query: 604 GILTAGDTLVRIEKGELLSGTLCKKTLGT-STGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
L D+ V I+ EL+SG++ K TLG+ S ++ +++ + G + A + L
Sbjct: 632 EDLCVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAP 691
Query: 663 YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
+L FSIGIGD ++ + ++ I+ L+ +PG T E+
Sbjct: 692 VYLSNRGFSIGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETL 751
Query: 723 ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
E + + L+ RD AGS+ + L +SN+ M GSKGSFINISQM ACVGQQ + G R
Sbjct: 752 EALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSR 811
Query: 783 IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
+P GF +R+LPHF K P ++GFV NS+ GLTP EFFFH M GREGL+DTAVKT+ET
Sbjct: 812 VPDGFENRSLPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAET 871
Query: 843 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
GY+QRRLVK++ED+ +YD TVR+S GD+IQF+YG DG+D +E + + L+ K+
Sbjct: 872 GYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGKD-EPLEFKR 926
Score = 810 (290.2 bits), Expect = 1.8e-108, Sum P(3) = 1.8e-108
Identities = 206/569 (36%), Positives = 303/569 (53%)
Query: 7 YSPAEVAK-VRMVQFGILSPDEIRQMSVVQIEHGETTERGK---PKPGGLSDPRLGTIDR 62
+ +VAK + + FG+ SP+E+RQ + +Q+ + P G+ D R+GT ++
Sbjct: 6 FRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGTSEK 65
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-F 121
CETC N+A+C GH+G+++L P FH+G+ + V+ I++ +C C I+ +++ K F
Sbjct: 66 DRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQF 125
Query: 122 KQALKIRN----PKNRLKK-ILDACKNKTKCEG-GDEIDVPGQDGEEPL--KKNKGGCGA 173
LK K LKK I D C+ K C G + G + +K K
Sbjct: 126 LDYLKRPGLTYLQKRGLKKKISDKCRKKNICHYCGAFNGTVKKCGLLKIIHEKYKTNKKV 185
Query: 174 QQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
P ++ + ++ + N + E L + + L VL + KRI ED LL
Sbjct: 186 VDPIVS----NFLQSFETAIEHNKEVEPLLGRAQ--ENLNPLVVLNLFKRIPAEDVPLLL 239
Query: 234 LNPKYARPDWMILQVLX-----------XXXXXXXXSDDLTHQLAMIIRHNENLRRQERN 282
+NP+ +P +IL L DDLT +L II N+ +++ +
Sbjct: 240 MNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRIS 299
Query: 283 GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
GA +I E LQ A Y ++EL G P + + RLK K+GR RGNL G
Sbjct: 300 GAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPKKWTRGFVQRLKGKQGRFRGNLSG 358
Query: 343 KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
KRVDFS RTVI+PDP + ID++ VP +A LT+PE V NI L++LV GP PG
Sbjct: 359 KRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG- 417
Query: 403 TGAKYIIRDDGQ-RLDLRY-LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 460
A +I + Q + L+Y ++ L+ G VERHL DGD VLFNRQPSLHK+SIM
Sbjct: 418 --ANFIQQRHTQMKRFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMA 475
Query: 461 HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
H K+ P+ TFR N V +PYNADFDGDEMN+H+PQ+ E +AE L LM +V+P++
Sbjct: 476 HLAKVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNG 535
Query: 521 RPVMGIVQDTL---LGCRKITKRDTFIEK 546
P++ +QD L +G +T +DTF ++
Sbjct: 536 EPLIAAIQDFLTAFVGAYLLTLKDTFFDR 564
Score = 341 (125.1 bits), Expect = 2.5e-167, Sum P(3) = 2.5e-167
Identities = 95/322 (29%), Positives = 166/322 (51%)
Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE 1157
V++ N+TLGVPR++EIIN +K I TP ++ L + + A+ V+ +E T L ++E
Sbjct: 1044 VASMNITLGVPRIKEIINASKAISTPIITAQLDK--DDDADYARLVKGRIEKTLLGEISE 1101
Query: 1158 ATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMA 1217
E + PD +++ +E ++ LLR+E+N E V + M+
Sbjct: 1102 YIEEVFLPDDCFILVKLSLERIR------------------LLRLEVNAET-VRYSICMS 1142
Query: 1218 AVAEKINQE--FDDDLTCIFNDDNA-DKLILRIRIMNDEAPKGELND--ESAEDDVFLKK 1272
+ K + + C+ +N+ + ++ + ++ PK + E + + + +
Sbjct: 1143 KLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDE 1202
Query: 1273 IESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
++ + G NL AVM V RTTSN+ E+ + LGIEA R +++E++ +
Sbjct: 1203 QSGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMV 1262
Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
G ++ RH+ +L D MTY+G ++ ITR G+ + +M SFE+T D L DAA F +
Sbjct: 1263 NHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQ 1322
Query: 1393 SDYLRGVTENIMLGQLAPIGTG 1414
D + GV+E I++G IGTG
Sbjct: 1323 KDSVCGVSECIIMGIPMNIGTG 1344
Score = 55 (24.4 bits), Expect = 2.5e-167, Sum P(3) = 2.5e-167
Identities = 12/44 (27%), Positives = 24/44 (54%)
Query: 1039 RVLKE-HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
RVL + R+T E + +++++ + PG +G + AQS+
Sbjct: 1001 RVLYQLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSV 1044
Score = 51 (23.0 bits), Expect = 4.5e-77, Sum P(2) = 4.5e-77
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 735 DEAGSSAQKSLSESNNLKA-MVTAGSKGS 762
+++G K L E +NL+A M T G KG+
Sbjct: 1202 EQSGKEKYKLLVEGDNLRAVMATHGVKGT 1230
Score = 45 (20.9 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 37/162 (22%), Positives = 67/162 (41%)
Query: 448 NRQPSLHKMSIMGHRI----KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAE 503
N P L+ ++ HR+ K P T NL+ + D + HV F
Sbjct: 47 NHAPLLY--GVLDHRMGTSEKDRPCETCGKNLADCLGHYGYIDLELPCFHVGY-FRAVIG 103
Query: 504 VLELMMVPKC--IVSPQSNRPVMGIVQD---TLLGCRKITKRDTFIEKDVFMNILMWWED 558
+L+++ C ++S + + + ++ T L R + K+ + +K NI +
Sbjct: 104 ILQMICKTCCHIMLSQEEKKQFLDYLKRPGLTYLQKRGLKKKIS--DKCRKKNICHYCGA 161
Query: 559 FDGKVPQPTILK--PRPLWTGKQVFNLIIPKQINLFRTAAWH 598
F+G V + +LK T K+V + I+ + F TA H
Sbjct: 162 FNGTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEH 203
Score = 39 (18.8 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 313 RATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
RA G + ++C++ A G K + +++ + TP T +D+
Sbjct: 1027 RAQMEPGSAVGALCAQSVASMNITLGVPRIKEIINASKAISTPIITAQLDK 1077
>FB|FBgn0019938 [details] [associations]
symbol:RpI1 "RNA polymerase I subunit" species:7227
"Drosophila melanogaster" [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:AE013599 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 EMBL:Y09103 EMBL:AY121632 PIR:T13803
RefSeq:NP_523743.1 UniGene:Dm.8031 ProteinModelPortal:P91875
SMR:P91875 MINT:MINT-1742038 STRING:P91875 PaxDb:P91875
GeneID:36617 KEGG:dme:Dmel_CG10122 CTD:36617 FlyBase:FBgn0019938
InParanoid:P91875 OrthoDB:EOG466T1R GenomeRNAi:36617 NextBio:799515
Bgee:P91875 GermOnline:CG10122 Uniprot:P91875
Length = 1642
Score = 690 (248.0 bits), Expect = 5.3e-137, Sum P(4) = 5.3e-137
Identities = 217/688 (31%), Positives = 339/688 (49%)
Query: 610 DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
++ V+I GELL G L K+ G +T LIH ++E G D + L + ++L
Sbjct: 714 ESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVSTLLLTAFTKVFTFFLQLEG 773
Query: 670 FSIGIGDT----IADAKTMETINDTISKAKNNVKNLIK----QAQDKSLEPEPGRTMMES 721
F++G+ D +AD K + I + + + V ++ D+ +E + +S
Sbjct: 774 FTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELEDEPPHDELVEKMEAAYVKDS 833
Query: 722 -----FENKVNQVLNTARDEAGSSA-QKSLSE---SNNLKAMVTAGSKGSFINISQMTAC 772
+ K +L+ ++ S+ + L SNNL+ MV +G+KGS +N Q++
Sbjct: 834 KFRVLLDRKYKSLLDGYTNDINSTCLPRGLITKFPSNNLQLMVLSGAKGSMVNTMQISCL 893
Query: 773 VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 832
+GQ +EGKR P ++LP FT + P+S GF++ ++ G+ PQ+FFFH M GREGL
Sbjct: 894 LGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQPQDFFFHCMAGREGL 953
Query: 833 IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLD 892
IDTAVKTS +GY+QR L+K +E + V YD TVR+S V+QFLYGEDG+D L
Sbjct: 954 IDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGEDGLD-------ILK 1006
Query: 893 SLKMKKSEFDKAFRFEMDEENWNPNYM-LQEYIDDLKTI----KELRDVFDAEVQKLEAD 947
S K +F F + P + L + + L + K +R + KL A
Sbjct: 1007 S-KFFNDKFCADFLTQNATAILRPAQLQLMKDEEQLAKVQRHEKHIRSWEKKKPAKLRAA 1065
Query: 948 RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1007
+ E+ + P +N K ++ F + + +A DK R K
Sbjct: 1066 FTHFSEELREEVEVKRPNEINSK----TGRRRFD-----EGLLKLWKKADAEDKALYRKK 1116
Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI-ESRFLQSL 1066
DP +V K L++ + T ++++ ++ + A + I +I + ++SL
Sbjct: 1117 YARCPDP-TVAVYKQ-DLYYGSVSERT---RKLITDYAKRKPALKETIADIMRVKTIKSL 1171
Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK-IKTPSL 1125
APGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ +A IKTPS+
Sbjct: 1172 AAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMLASSNIKTPSM 1231
Query: 1126 SVFLKPGVNSTKERAK-NVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
+ +KPG E+ + N+ L V +T + DP+ E D+ F E
Sbjct: 1232 DIPIKPGQQHQAEKLRINLNSVTLANLLEYVHVSTGLTLDPERS---YEYDMRFQFLPRE 1288
Query: 1185 MPDED--IAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN-AD 1241
+ ED + P+ I ++ + + + K+S A+ KI DD +DDN D
Sbjct: 1289 VYKEDYGVRPKHIIKYMHQTFFKQLIRAILKVSNASRTTKI-VVIDDKKDADKDDDNDLD 1347
Query: 1242 KLILRIRIMNDEA--PKGELNDESAEDD 1267
DE K + ND+ + DD
Sbjct: 1348 N--------GDEVGRSKAKANDDDSSDD 1367
Score = 503 (182.1 bits), Expect = 5.3e-137, Sum P(4) = 5.3e-137
Identities = 121/284 (42%), Positives = 168/284 (59%)
Query: 317 RSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTY 376
+SG +K I ++ K G IR ++MGKRV+++ARTVITPDP IN+D++G+P A L+Y
Sbjct: 394 KSGEGLKQI---IEKKSGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSY 450
Query: 377 PETVTPYNIERLKELVEYGPHPPPG------KTG-AKYIIRDDG-QRLDLRYLKKSSDHH 428
P VT +N+ L+++V GP PG K G YI D+ +R L L S+
Sbjct: 451 PVPVTEWNVTELRKMVMNGPDVHPGANYIQDKNGFTTYIPADNASKRESLAKLLLSNPKD 510
Query: 429 LELGYK-VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFD 486
G K V RH+ +GD +L NRQPSLHK SIMGH+ +I+ TFRL+ S YNADFD
Sbjct: 511 ---GIKIVHRHVLNGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFD 567
Query: 487 GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
GDEMN H PQS RAE L+ V + P+ P+ G++QD ++ K++ R F +
Sbjct: 568 GDEMNAHYPQSEVARAEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNR 627
Query: 547 D-----VFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
+ VF + +D K+ PTILKP LW+GKQ+ + II
Sbjct: 628 EDYQQLVFQGLSQLKKDI--KLLPPTILKPAVLWSGKQILSTII 669
Score = 180 (68.4 bits), Expect = 5.3e-137, Sum P(4) = 5.3e-137
Identities = 39/105 (37%), Positives = 62/105 (59%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMK-CETCTANMAE 75
++F + + EIR++SVV++ G T + G PGGL D R+G+ R M C TC + +
Sbjct: 16 LEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMGSYGRCMDPCGTCL-KLQD 74
Query: 76 CPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
CPGH GH+EL P+++ F+K V ++ C +C K+ DH+
Sbjct: 75 CPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKL--QMKDHE 117
Score = 169 (64.5 bits), Expect = 5.3e-137, Sum P(4) = 5.3e-137
Identities = 40/131 (30%), Positives = 67/131 (51%)
Query: 1285 GVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
G+N+ + H + D R SN + I GIEA + ++ E+ V G V+ RHL
Sbjct: 1504 GINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHL 1563
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
+++ D MT+ G ++R G+ + + P+ + SFE ++ L AA F +D L + +
Sbjct: 1564 SLIADYMTFDGTFQPLSRKGMEHSSS-PLQQMSFESSLQFLKSAAGFGRADELSSPSSRL 1622
Query: 1404 MLGQLAPIGTG 1414
M+G GTG
Sbjct: 1623 MVGLPVRNGTG 1633
Score = 50 (22.7 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
Identities = 25/103 (24%), Positives = 44/103 (42%)
Query: 265 QLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKS 324
QLA + RH +++R E+ PA + + F T+F EL + + I S
Sbjct: 1040 QLAKVQRHEKHIRSWEKK-KPAKLRAAF---------THFSEEL--REEVEVKRPNEINS 1087
Query: 325 ICSRLKAKEGRIRGNLMGKRVDFSARTVIT------PDPTINI 361
R + EG ++ + K+ D + + PDPT+ +
Sbjct: 1088 KTGRRRFDEGLLK---LWKKADAEDKALYRKKYARCPDPTVAV 1127
Score = 47 (21.6 bits), Expect = 2.8e-20, Sum P(3) = 2.8e-20
Identities = 23/104 (22%), Positives = 48/104 (46%)
Query: 1173 EEDVEFVKSYYEMPDEDIAPEKI-SPWLLRIELNREMMVDKKLSMAAVA-EKINQEFDDD 1230
E+ E K+ Y+ + A EK+ + WL ++++ ++++D +S + E + Q +
Sbjct: 348 EKLTEEAKAAYQTLKGETAHEKLYTAWLA-LQMSVDVLLDVNMSREMKSGEGLKQIIEKK 406
Query: 1231 LTCIFNDDNADKLILRIRIMNDEAPKGELN-DESAEDDVFLKKI 1273
I + ++ R + P +N DE D+F KK+
Sbjct: 407 SGLIRSHMMGKRVNYAARTVI--TPDPNINVDEIGIPDIFAKKL 448
Score = 41 (19.5 bits), Expect = 1.5e-123, Sum P(4) = 1.5e-123
Identities = 29/127 (22%), Positives = 58/127 (45%)
Query: 1252 DEAPKGELNDESAEDDVFLKKIESN-MLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEI 1310
D+ KG+ +++ DD ++++ SN M+ N L ++ R + L I
Sbjct: 1411 DDEEKGQDGNDNDGDDKAVERLLSNDMVKAYTYDKENHLWCQVKLNLSVRYQKPD-LTSI 1469
Query: 1311 I-EVLG------IEAVRRALL---DELRVVISFDGSYVN--YRHLAILCDTMTYRGHLMA 1358
I E+ G ++ ++RA++ ++ ++ DG + ++H IL Y + A
Sbjct: 1470 IRELAGKSVVHQVQHIKRAIIYKGNDDDQLLKTDGINIGEMFQHNKILDLNRLYSNDIHA 1529
Query: 1359 ITR-HGI 1364
I R +GI
Sbjct: 1530 IARTYGI 1536
Score = 37 (18.1 bits), Expect = 3.0e-19, Sum P(3) = 3.0e-19
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 1257 GELNDESAEDDVFLKKIESNMLTEMALR 1284
G++ + + D+++ IE+N + + L+
Sbjct: 314 GDMLKGNPQTDIYINIIENNHVLNVVLK 341
>UNIPROTKB|F1SVC3 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
OMA:CLLNETT PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:CU570839 Ensembl:ENSSSCT00000009008 Uniprot:F1SVC3
Length = 1723
Score = 608 (219.1 bits), Expect = 1.8e-123, Sum P(4) = 1.8e-123
Identities = 214/702 (30%), Positives = 340/702 (48%)
Query: 610 DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL-LQN 668
++ V I GELL G L K G+S L+H +E G + + K L L +L L
Sbjct: 738 ESQVVIRDGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYR 797
Query: 669 AFSIGIGDTI----ADAKTMETINDTISKAKNNVK---NLIKQA---------QDKSLEP 712
F++G+ D + AD + I ++ V+ NL + A QD L
Sbjct: 798 GFTLGVEDILVKPRADVRRHRIIEESTRCGPRAVRAALNLPEAASCDEVRGKWQDAHLSK 857
Query: 713 EPGR-TMME-SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
+ M++ F+ +VN N NNL+ MV +G+KGS +N Q++
Sbjct: 858 DQRDFNMIDLKFKEEVNHHSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQIS 917
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
+GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GRE
Sbjct: 918 CLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGRE 977
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GL+DTAVKTS +GY+QR ++K +E ++V+YD TVR+S G V+QFLYGEDG+D ++Q
Sbjct: 978 GLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIP--KTQF 1035
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
L K+ F A +E+ ++ + L+E + + K LR F A ++K ++
Sbjct: 1036 LQP---KQFPF-LASNYEVIMKSKH----LREVLSKAEPKKALRH-FRA-IKKWQSRHSN 1085
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL---K 1007
+ S + +K L N + + + R P + + +D+ R K
Sbjct: 1086 SLLREGAFLNYSQKIQAAVKAL--NLEGANQ-NGRSPETHQVLRMWSELDEQSRRKYQKK 1142
Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASK----------RVLKEHRLTREAFEWVIGE 1057
P DP S+ + F ++ TF K + K H + + E +
Sbjct: 1143 AAPCPDP-SLSVWRPDIYFASV--SETFEKKMDDYSLEWAAQAEKSHEKSELSLERLRTL 1199
Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
++ ++ +SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ VA
Sbjct: 1200 LQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVA 1259
Query: 1118 K-KIKTPSLSVFLKPGVNSTK--ERAKNVQCALEYTTLRSVTEATEVWYDPDPMGT---- 1170
IKTP +SV P N+ + ++ K+++ L L V E +V + MG
Sbjct: 1260 SANIKTPMMSV---PVFNTRRALKKVKSLKKQLTRVCLGEVLEKIDV-QESFSMGEKQAK 1315
Query: 1171 --IIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMM--VDKKLSMAAVAEKIN-- 1224
+ + +F+ ++ + PE I ++ + +M + KK + A+ +N
Sbjct: 1316 FRVYQLRFQFLPYACYQQEKCLRPEDILHFM-ETRFFKILMESIKKKNNKASTFRNVNTR 1374
Query: 1225 QEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAED 1266
+ DL DD+ + R D+ +G + D AE+
Sbjct: 1375 RATQRDL-----DDSGESERTRGDREGDDEEEGHIVDAEAEE 1411
Score = 486 (176.1 bits), Expect = 1.8e-123, Sum P(4) = 1.8e-123
Identities = 117/308 (37%), Positives = 173/308 (56%)
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQ H+ FD+E+ + T I+ I L+ K+G R ++MGKRVD++AR+VI P
Sbjct: 398 LQSHVNIVFDSEMD---KLTMEKYPGIRQI---LEKKDGLFRKHMMGKRVDYAARSVICP 451
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
D IN +++G+P A LTYP+ VTP+N++ L++ V GP PG A +I +DG R
Sbjct: 452 DMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPTVHPG---ASMVINEDGSR 508
Query: 416 L-----DL--------RYLKKSSDHHLELGYKVE-RHLNDGDFVLFNRQPSLHKMSIMGH 461
DL + L ++ G K+ RH+ +GD +L NRQP+LH+ SI H
Sbjct: 509 TALSASDLTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAH 568
Query: 462 RIKIMPYS-TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
R +I+P RL+ + YNADFDGDEMN H PQS RAE L + + P+
Sbjct: 569 RARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDG 628
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM-WWEDFDGKVP--QPTILKPRPLWTG 577
+P+ G++QD ++ +T R F ++ +M ++ D G+V P ILKP PLWTG
Sbjct: 629 QPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTG 688
Query: 578 KQVFNLII 585
KQV + ++
Sbjct: 689 KQVVSTLL 696
Score = 164 (62.8 bits), Expect = 1.8e-123, Sum P(4) = 1.8e-123
Identities = 40/131 (30%), Positives = 70/131 (53%)
Query: 1285 GVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
G+NL + + +V D RR SN + + GIEA R + E++ V + G V+ RHL
Sbjct: 1585 GINLPELFKYAEVLDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHL 1644
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
+++ D M + G + R GI R+++ P+ + +FE + L A + D LR + +
Sbjct: 1645 SLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATMMGSHDELRSPSACL 1703
Query: 1404 MLGQLAPIGTG 1414
++G++ GTG
Sbjct: 1704 VVGKVVRGGTG 1714
Score = 162 (62.1 bits), Expect = 1.8e-123, Sum P(4) = 1.8e-123
Identities = 34/98 (34%), Positives = 54/98 (55%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTAN 72
+++ + FG+ S +E++++SV I + + G P GL D LG D K C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPPDSKEVCSTCVQD 70
Query: 73 MAECPGHFGHLELAKPMFH-IGFMKTVLSIMRSVCFNC 109
CPGH GH+EL +++ + F K L ++R C NC
Sbjct: 71 FNNCPGHLGHIELPLTVYNPLLFDKLYL-LLRGSCLNC 107
Score = 45 (20.9 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 1147 LEYTTLRSVTEATEVWY-----DPDPMGTIIEEDVE 1177
LE L++V E + Y +PDP + I+E++E
Sbjct: 127 LEVGALQAVYELERILYRFLEENPDPTASEIQEELE 162
Score = 44 (20.5 bits), Expect = 1.7e-17, Sum P(3) = 1.7e-17
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 936 VFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVD 983
VFD+E+ KL ++Y +I D + + KR+ + A+ D
Sbjct: 405 VFDSEMDKLTMEKYPGIRQILEKKDGLFRKHMMGKRVDYAARSVICPD 452
Score = 43 (20.2 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 19/80 (23%), Positives = 35/80 (43%)
Query: 139 DACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDD 198
DA K K + +E+D ++ EE + + Q + +I G E + + +
Sbjct: 1415 DASDAKRKEKQEEEVDYESEEDEEKEEDEEKEDEDIQEEGSIRGEGFHQEQEEEEGLGPE 1474
Query: 199 QEQLPE-PVE--RKQTLTAE 215
++ LP P+ RK T + E
Sbjct: 1475 EDSLPAAPLTQPRKPTRSRE 1494
>UNIPROTKB|G3V7B7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CH473957
GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 UniGene:Rn.24877
Ensembl:ENSRNOT00000013587 Uniprot:G3V7B7
Length = 1716
Score = 621 (223.7 bits), Expect = 3.9e-123, Sum P(4) = 3.9e-123
Identities = 216/700 (30%), Positives = 338/700 (48%)
Query: 610 DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL-LQN 668
++ V I +GELL G L K G+S L+H +E G + + + L L +L L
Sbjct: 741 ESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYR 800
Query: 669 AFSIGIGDTI----ADAKTMETINDTISKAKNNVK---NLIKQA-----QDKSLEPEPGR 716
F++G+ D + AD I ++ V+ NL + A Q K + G+
Sbjct: 801 GFTLGVEDILVKPNADVMRQRIIEESTQCGPRAVRAALNLPEAASCDEIQGKWQDAHLGK 860
Query: 717 -----TMME-SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
M++ F+ +VN N NNL+ MV +G+KGS +N Q++
Sbjct: 861 DQRDFNMIDMKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQIS 920
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
+GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GRE
Sbjct: 921 CLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGRE 980
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GL+DTAVKTS +GY+QR ++K +E ++++YD TVR+S G V+QFLYGEDG+D ++Q
Sbjct: 981 GLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLDIP--KTQF 1038
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
L K+ F A +E+ ++ + + +L D K ++ R + K R+
Sbjct: 1039 LQP---KQFPF-LASNYEVIMKSKHLHEVLSR-ADPQKVLRHFRAI------KKWHHRHS 1087
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQ-KTFKVDPRRPSDMHPMEVVEAVDKLQERL--- 1006
A + S+ + N + KT + R P +++ +D+ R
Sbjct: 1088 SAL-LRKGAFLSFSQKIQAAVKALNLEGKT--QNGRSPETQQMLQMWHELDEQSRRKYQK 1144
Query: 1007 KVVPGEDP-LSVE------AQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
+ P DP LSV A + T I S + + K H + + + + ++
Sbjct: 1145 RAAPCPDPSLSVWRPDIHFASVSETFEKKIDDYSQEWAAQAEKSHNRSELSLDRLRTLLQ 1204
Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK- 1118
++ +SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ VA
Sbjct: 1205 LKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASA 1264
Query: 1119 KIKTPSLSVFLKPGVNSTK--ERAKNVQCALEYTTLRSVTEATEVWYDPDPMGT------ 1170
IKTP +SV P N+ K R K+++ L L V + ++ + MG
Sbjct: 1265 NIKTPMMSV---PVFNTKKALRRVKSLKKQLTRVCLGEVLQKVDI-QESFCMGEKQNKFR 1320
Query: 1171 IIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMM--VDKKLSMAAVAEKIN--QE 1226
+ E +F+ Y ++ + PE I ++ + +M + KK S A+ +N +
Sbjct: 1321 VYELRFQFLPHAYYQQEKCLRPEDILHFM-ETRFFKLLMEAIKKKNSKASAFRSVNTRRA 1379
Query: 1227 FDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAED 1266
DL DD D R DE +G + D AE+
Sbjct: 1380 TQKDL-----DDTEDSGRNRREEERDEEEEGNIVDAEAEE 1414
Score = 481 (174.4 bits), Expect = 3.9e-123, Sum P(4) = 3.9e-123
Identities = 118/308 (38%), Positives = 173/308 (56%)
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQ H+ FD+++ + + G I+ I L+ KEG R ++MGKRVD++AR+VI P
Sbjct: 401 LQSHVNIVFDSDMD-KLMLEKYPG--IRQI---LEKKEGLFRKHMMGKRVDYAARSVICP 454
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
D IN +++G+P A LTYP+ VTP+N++ L++ V GP+ PG A +I +DG R
Sbjct: 455 DMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG---ASMVINEDGSR 511
Query: 416 LDL-------------RYLKKSSDHHLELGYKVE-RHLNDGDFVLFNRQPSLHKMSIMGH 461
L + L S+ G KV RH+ +GD +L NRQP+LH+ SI H
Sbjct: 512 TALSAVDATQREAVAKQLLTPSTGIPKPQGAKVVCRHVKNGDILLLNRQPTLHRPSIQAH 571
Query: 462 RIKIMPYS-TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
R I+P RL+ + YNADFDGDEMN H PQS RAE L + + P+
Sbjct: 572 RAHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDG 631
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM-WWEDFDGKVP--QPTILKPRPLWTG 577
+P+ G++QD ++ +T R F ++ +M ++ D G+V P ILKP PLWTG
Sbjct: 632 QPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTG 691
Query: 578 KQVFNLII 585
KQV + ++
Sbjct: 692 KQVVSTLL 699
Score = 160 (61.4 bits), Expect = 3.9e-123, Sum P(4) = 3.9e-123
Identities = 38/131 (29%), Positives = 69/131 (52%)
Query: 1285 GVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
G+NL + + +V D RR SN + + GIEA R + E++ V + G V+ RHL
Sbjct: 1578 GINLPELFKYSEVLDLRRLYSNDIHAVANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHL 1637
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
+++ D M + G + R GI ++ + P+ + +FE + L A + D L+ + +
Sbjct: 1638 SLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACL 1696
Query: 1404 MLGQLAPIGTG 1414
++G++ GTG
Sbjct: 1697 VVGKVVKGGTG 1707
Score = 154 (59.3 bits), Expect = 3.9e-123, Sum P(4) = 3.9e-123
Identities = 47/186 (25%), Positives = 82/186 (44%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTAN 72
+++ + FG+ S +E++++SV I + + G P GL D LG D K C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSKEVCSTCVQD 70
Query: 73 MAECPGHFGHLELAKPMFH-IGFMKTVLSIMRSVCFNCSKILADEDD-HKFKQALKIRN- 129
C GH GH++L +++ + F K L ++R C NC + H LK+ +
Sbjct: 71 FNNCSGHLGHIDLPLTVYNPLLFDKLYL-LLRGSCLNCHMLTCPRAAIHLLVCQLKVLDV 129
Query: 130 ----PKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK--GGCGAQQPKLTIEGM 183
L++IL +T EI ++ + +N G GA +
Sbjct: 130 GALQAVYELERILSRFLEETSDPSAFEIQEELEEYTSKILQNNLLGSQGAHVKNVCESRS 189
Query: 184 KMIAEY 189
K++A +
Sbjct: 190 KLVAHF 195
Score = 38 (18.4 bits), Expect = 9.4e-77, Sum P(4) = 9.4e-77
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 372 LNLTYPETVTPYNIERLKELVEYGPHPP 399
L +TYP V + ++ EL E P P
Sbjct: 223 LTITYPAMVHKKSGQKDAELPEGAPAAP 250
Score = 37 (18.1 bits), Expect = 1.8e-14, Sum P(4) = 1.8e-14
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 936 VFDAEVQKLEADRY 949
VFD+++ KL ++Y
Sbjct: 408 VFDSDMDKLMLEKY 421
>RGD|620824 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISO;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IDA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:620824
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 KO:K02999 PANTHER:PTHR19376:SF11 CTD:25885
HOGENOM:HOG000205401 HOVERGEN:HBG017741 OrthoDB:EOG41VK23
EMBL:AF025425 IPI:IPI00199160 PIR:T14103 RefSeq:NP_113960.1
UniGene:Rn.24877 ProteinModelPortal:O54889 STRING:O54889
PhosphoSite:O54889 PRIDE:O54889 GeneID:83581 KEGG:rno:83581
UCSC:RGD:620824 InParanoid:O54889 NextBio:616111
ArrayExpress:O54889 Genevestigator:O54889 Uniprot:O54889
Length = 1716
Score = 617 (222.3 bits), Expect = 1.1e-122, Sum P(4) = 1.1e-122
Identities = 212/700 (30%), Positives = 335/700 (47%)
Query: 610 DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL-LQN 668
++ V I +GELL G L K G+S L+H +E G + + + L L +L L
Sbjct: 741 ESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYR 800
Query: 669 AFSIGIGDTI----ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR-------- 716
F++G+ D + AD I ++ V+ + + S + G+
Sbjct: 801 GFTLGVEDILVKPNADVMRQRIIEESTQCGPRAVRAALNLPEAASCDEIQGKWQDAIWRK 860
Query: 717 -----TMME-SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
M++ F+ +VN N NNL+ MV +G+KGS +N Q++
Sbjct: 861 DQRDFNMIDMKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQIS 920
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
+GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GRE
Sbjct: 921 CLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGRE 980
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GL+DTAVKTS +GY+QR ++K +E ++++YD TVR+S G V+QFLYGEDG+D ++Q
Sbjct: 981 GLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLDIP--KTQF 1038
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
L K+ F A +E+ ++ + + +L D K ++ R + K R+
Sbjct: 1039 LQP---KQFPF-LASNYEVIMKSKHLHEVLSR-ADPQKVLRHFRAI------KKWHHRHS 1087
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQ-KTFKVDPRRPSDMHPMEVVEAVDKLQERL--- 1006
A + S+ + N + KT + R P +++ +D+ R
Sbjct: 1088 SAL-LRKGAFLSFSQKIQAAVKALNLEGKT--QNGRSPETQQMLQMWHELDEQSRRKYQK 1144
Query: 1007 KVVPGEDP-LSVE------AQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
+ P DP LSV A + T I S + + K H + + + + ++
Sbjct: 1145 RAAPCPDPSLSVWRPDIHFASVSETFEKKIDDYSQEWAAQAEKSHNRSELSLDRLRTLLQ 1204
Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK- 1118
++ +SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ VA
Sbjct: 1205 LKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASA 1264
Query: 1119 KIKTPSLSVFLKPGVNSTK--ERAKNVQCALEYTTLRSVTEATEVWYDPDPMGT------ 1170
IKTP +SV P N+ K R K+++ L L V + ++ + MG
Sbjct: 1265 NIKTPMMSV---PVFNTKKALRRVKSLKKQLTRVCLGEVLQKVDI-QESFCMGEKQNKFR 1320
Query: 1171 IIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMM--VDKKLSMAAVAEKIN--QE 1226
+ E +F+ Y ++ + PE I ++ + +M + KK S A+ +N +
Sbjct: 1321 VYELRFQFLPHAYYQQEKCLRPEDILHFM-ETRFFKLLMEAIKKKNSKASAFRSVNTRRA 1379
Query: 1227 FDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAED 1266
DL DD D R DE +G + D AE+
Sbjct: 1380 TQKDL-----DDTEDSGRNRREEERDEEEEGNIVDAEAEE 1414
Score = 481 (174.4 bits), Expect = 1.1e-122, Sum P(4) = 1.1e-122
Identities = 118/308 (38%), Positives = 173/308 (56%)
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQ H+ FD+++ + + G I+ I L+ KEG R ++MGKRVD++AR+VI P
Sbjct: 401 LQSHVNIVFDSDMD-KLMLEKYPG--IRQI---LEKKEGLFRKHMMGKRVDYAARSVICP 454
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
D IN +++G+P A LTYP+ VTP+N++ L++ V GP+ PG A +I +DG R
Sbjct: 455 DMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG---ASMVINEDGSR 511
Query: 416 LDL-------------RYLKKSSDHHLELGYKVE-RHLNDGDFVLFNRQPSLHKMSIMGH 461
L + L S+ G KV RH+ +GD +L NRQP+LH+ SI H
Sbjct: 512 TALSAVDATQREAVAKQLLTPSTGIPKPQGAKVVCRHVKNGDILLLNRQPTLHRPSIQAH 571
Query: 462 RIKIMPYS-TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
R I+P RL+ + YNADFDGDEMN H PQS RAE L + + P+
Sbjct: 572 RAHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDG 631
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM-WWEDFDGKVP--QPTILKPRPLWTG 577
+P+ G++QD ++ +T R F ++ +M ++ D G+V P ILKP PLWTG
Sbjct: 632 QPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTG 691
Query: 578 KQVFNLII 585
KQV + ++
Sbjct: 692 KQVVSTLL 699
Score = 160 (61.4 bits), Expect = 1.1e-122, Sum P(4) = 1.1e-122
Identities = 38/131 (29%), Positives = 69/131 (52%)
Query: 1285 GVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
G+NL + + +V D RR SN + + GIEA R + E++ V + G V+ RHL
Sbjct: 1578 GINLPELFKYSEVLDLRRLYSNDIHAVANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHL 1637
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
+++ D M + G + R GI ++ + P+ + +FE + L A + D L+ + +
Sbjct: 1638 SLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACL 1696
Query: 1404 MLGQLAPIGTG 1414
++G++ GTG
Sbjct: 1697 VVGKVVKGGTG 1707
Score = 154 (59.3 bits), Expect = 1.1e-122, Sum P(4) = 1.1e-122
Identities = 47/186 (25%), Positives = 82/186 (44%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTAN 72
+++ + FG+ S +E++++SV I + + G P GL D LG D K C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSKEVCSTCVQD 70
Query: 73 MAECPGHFGHLELAKPMFH-IGFMKTVLSIMRSVCFNCSKILADEDD-HKFKQALKIRN- 129
C GH GH++L +++ + F K L ++R C NC + H LK+ +
Sbjct: 71 FNNCSGHLGHIDLPLTVYNPLLFDKLYL-LLRGSCLNCHMLTCPRAAIHLLVCQLKVLDV 129
Query: 130 ----PKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK--GGCGAQQPKLTIEGM 183
L++IL +T EI ++ + +N G GA +
Sbjct: 130 GALQAVYELERILSRFLEETSDPSAFEIQEELEEYTSKILQNNLLGSQGAHVKNVCESRS 189
Query: 184 KMIAEY 189
K++A +
Sbjct: 190 KLVAHF 195
Score = 38 (18.4 bits), Expect = 2.6e-76, Sum P(4) = 2.6e-76
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 372 LNLTYPETVTPYNIERLKELVEYGPHPP 399
L +TYP V + ++ EL E P P
Sbjct: 223 LTITYPAMVHKKSGQKDAELPEGAPAAP 250
Score = 37 (18.1 bits), Expect = 1.8e-14, Sum P(4) = 1.8e-14
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 936 VFDAEVQKLEADRY 949
VFD+++ KL ++Y
Sbjct: 408 VFDSDMDKLMLEKY 421
>UNIPROTKB|B9ZVN9 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AC009309 PANTHER:PTHR19376:SF11 HGNC:HGNC:17264
HOGENOM:HOG000205401 ChiTaRS:POLR1A EMBL:AC012511 IPI:IPI00916060
ProteinModelPortal:B9ZVN9 STRING:B9ZVN9 Ensembl:ENST00000409681
ArrayExpress:B9ZVN9 Bgee:B9ZVN9 Uniprot:B9ZVN9
Length = 1659
Score = 488 (176.8 bits), Expect = 2.1e-122, Sum P(6) = 2.1e-122
Identities = 117/308 (37%), Positives = 177/308 (57%)
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQ H+ FD+E+ + + G I+ I L+ KEG R ++MGKRVD++AR+VI P
Sbjct: 394 LQSHVNIVFDSEMD-KLMMDKYPG--IRQI---LEKKEGLFRKHMMGKRVDYAARSVICP 447
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
D IN +++G+P A LTYP+ VTP+N++ L++ V GP+ PG A +I +DG R
Sbjct: 448 DMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG---ASMVINEDGSR 504
Query: 416 -----LDL--------RYLKKSSDHHLELGYKVE-RHLNDGDFVLFNRQPSLHKMSIMGH 461
+D+ + L ++ G K+ RH+ +GD +L NRQP+LH+ SI H
Sbjct: 505 TALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAH 564
Query: 462 RIKIMPYS-TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
R +I+P RL+ + YNADFDGDEMN H PQS RAE L + + P+
Sbjct: 565 RARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDG 624
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM-WWEDFDGKVP--QPTILKPRPLWTG 577
+P+ G++QD ++ +T R F ++ +M ++ D G+V P+ILKP PLWTG
Sbjct: 625 QPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTG 684
Query: 578 KQVFNLII 585
KQV + ++
Sbjct: 685 KQVVSTLL 692
Score = 366 (133.9 bits), Expect = 2.1e-122, Sum P(6) = 2.1e-122
Identities = 72/161 (44%), Positives = 103/161 (63%)
Query: 722 FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
F+ +VN N N+L+ MV +G+KGS +N Q++ +GQ +EG+
Sbjct: 865 FKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGR 924
Query: 782 RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
R P ++LP F ++ P + GFV +L G+ P EFFFH M GREGL+DTAVKTS
Sbjct: 925 RPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSR 984
Query: 842 TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
+GY+QR ++K +E ++V+YD TVR+S G V+QFLYGEDG+D
Sbjct: 985 SGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1025
Score = 241 (89.9 bits), Expect = 2.1e-122, Sum P(6) = 2.1e-122
Identities = 76/222 (34%), Positives = 117/222 (52%)
Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
++ ++ +SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ VA
Sbjct: 1196 LQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVA 1255
Query: 1118 K-KIKTPSLSVFLKPGVNSTK--ERAKNVQCALEYTTLRSVTEATEV-----WYDPDPMG 1169
IKTP +SV P +N+ K +R K+++ L L V + +V +
Sbjct: 1256 SANIKTPMMSV---PVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKF 1312
Query: 1170 TIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMM--VDKKLSMAAVAEKIN--Q 1225
+ + +F+ Y ++ + PE I ++ + +M + KK + A+ +N +
Sbjct: 1313 QVYQLRFQFLPHAYYQQEKCLRPEDILRFM-ETRFFKLLMESIKKKNNKASAFRNVNTRR 1371
Query: 1226 EFDDDLTCIFNDDNADKL-ILRIRIMNDEAPKGELNDESAED 1266
DL DNA +L R DE +G + D AE+
Sbjct: 1372 ATQRDL------DNAGELGRSRGEQEGDEEEEGHIVDAEAEE 1407
Score = 167 (63.8 bits), Expect = 2.1e-122, Sum P(6) = 2.1e-122
Identities = 41/131 (31%), Positives = 70/131 (53%)
Query: 1285 GVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
G+NL + + +V D RR SN + I GIEA R + E++ V + G V+ RHL
Sbjct: 1521 GINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHL 1580
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
+++ D M + G + R GI R+++ P+ + +FE + L A + D LR + +
Sbjct: 1581 SLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACL 1639
Query: 1404 MLGQLAPIGTG 1414
++G++ GTG
Sbjct: 1640 VVGKVVRGGTG 1650
Score = 159 (61.0 bits), Expect = 2.1e-122, Sum P(6) = 2.1e-122
Identities = 33/98 (33%), Positives = 54/98 (55%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTAN 72
+++ + FG+ S +E++++SV I + + G P GL D LG D K C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70
Query: 73 MAECPGHFGHLELAKPMFH-IGFMKTVLSIMRSVCFNC 109
+ C GH GH+EL +++ + F K L ++R C NC
Sbjct: 71 FSNCSGHLGHIELPLTVYNPLLFDKLYL-LLRGSCLNC 107
Score = 90 (36.7 bits), Expect = 2.1e-122, Sum P(6) = 2.1e-122
Identities = 30/112 (26%), Positives = 50/112 (44%)
Query: 610 DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL-LQN 668
++ V I +GELL G L K G+S L+H +E G + + K L L +L L
Sbjct: 734 ESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYR 793
Query: 669 AFSIGIGDTI----ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR 716
F++G+ D + AD K I ++ V+ + + S + G+
Sbjct: 794 GFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGK 845
Score = 44 (20.5 bits), Expect = 1.9e-37, Sum P(4) = 1.9e-37
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 936 VFDAEVQKLEADRY 949
VFD+E+ KL D+Y
Sbjct: 401 VFDSEMDKLMMDKY 414
>UNIPROTKB|O95602 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase I subunit RPA1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=NAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=TAS] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=TAS]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=TAS] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CH471053
GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0009303
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 EMBL:U33460 EMBL:AH007280 EMBL:AK302458
EMBL:BC117173 EMBL:BC126303 EMBL:AL117467 IPI:IPI00031960
PIR:T17252 RefSeq:NP_056240.2 UniGene:Hs.531818
ProteinModelPortal:O95602 SMR:O95602 DIP:DIP-27537N IntAct:O95602
MINT:MINT-111492 STRING:O95602 PhosphoSite:O95602
SWISS-2DPAGE:O95602 PaxDb:O95602 PRIDE:O95602
Ensembl:ENST00000263857 GeneID:25885 KEGG:hsa:25885 UCSC:uc002sqs.3
CTD:25885 GeneCards:GC02M086253 H-InvDB:HIX0002233 HGNC:HGNC:17264
HPA:CAB010145 neXtProt:NX_O95602 PharmGKB:PA134891380
HOGENOM:HOG000205401 HOVERGEN:HBG017741 InParanoid:O95602
OrthoDB:EOG41VK23 ChiTaRS:POLR1A GenomeRNAi:25885 NextBio:47304
PMAP-CutDB:O95602 ArrayExpress:O95602 Bgee:O95602 CleanEx:HS_POLR1A
Genevestigator:O95602 GermOnline:ENSG00000068654 Uniprot:O95602
Length = 1720
Score = 488 (176.8 bits), Expect = 3.0e-122, Sum P(6) = 3.0e-122
Identities = 117/308 (37%), Positives = 177/308 (57%)
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQ H+ FD+E+ + + G I+ I L+ KEG R ++MGKRVD++AR+VI P
Sbjct: 394 LQSHVNIVFDSEMD-KLMMDKYPG--IRQI---LEKKEGLFRKHMMGKRVDYAARSVICP 447
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
D IN +++G+P A LTYP+ VTP+N++ L++ V GP+ PG A +I +DG R
Sbjct: 448 DMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG---ASMVINEDGSR 504
Query: 416 -----LDL--------RYLKKSSDHHLELGYKVE-RHLNDGDFVLFNRQPSLHKMSIMGH 461
+D+ + L ++ G K+ RH+ +GD +L NRQP+LH+ SI H
Sbjct: 505 TALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAH 564
Query: 462 RIKIMPYS-TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
R +I+P RL+ + YNADFDGDEMN H PQS RAE L + + P+
Sbjct: 565 RARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDG 624
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM-WWEDFDGKVP--QPTILKPRPLWTG 577
+P+ G++QD ++ +T R F ++ +M ++ D G+V P+ILKP PLWTG
Sbjct: 625 QPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTG 684
Query: 578 KQVFNLII 585
KQV + ++
Sbjct: 685 KQVVSTLL 692
Score = 366 (133.9 bits), Expect = 3.0e-122, Sum P(6) = 3.0e-122
Identities = 72/161 (44%), Positives = 103/161 (63%)
Query: 722 FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
F+ +VN N N+L+ MV +G+KGS +N Q++ +GQ +EG+
Sbjct: 865 FKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGR 924
Query: 782 RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
R P ++LP F ++ P + GFV +L G+ P EFFFH M GREGL+DTAVKTS
Sbjct: 925 RPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSR 984
Query: 842 TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
+GY+QR ++K +E ++V+YD TVR+S G V+QFLYGEDG+D
Sbjct: 985 SGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1025
Score = 241 (89.9 bits), Expect = 3.0e-122, Sum P(6) = 3.0e-122
Identities = 76/222 (34%), Positives = 117/222 (52%)
Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
++ ++ +SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ VA
Sbjct: 1196 LQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVA 1255
Query: 1118 K-KIKTPSLSVFLKPGVNSTK--ERAKNVQCALEYTTLRSVTEATEV-----WYDPDPMG 1169
IKTP +SV P +N+ K +R K+++ L L V + +V +
Sbjct: 1256 SANIKTPMMSV---PVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKF 1312
Query: 1170 TIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMM--VDKKLSMAAVAEKIN--Q 1225
+ + +F+ Y ++ + PE I ++ + +M + KK + A+ +N +
Sbjct: 1313 QVYQLRFQFLPHAYYQQEKCLRPEDILRFM-ETRFFKLLMESIKKKNNKASAFRNVNTRR 1371
Query: 1226 EFDDDLTCIFNDDNADKL-ILRIRIMNDEAPKGELNDESAED 1266
DL DNA +L R DE +G + D AE+
Sbjct: 1372 ATQRDL------DNAGELGRSRGEQEGDEEEEGHIVDAEAEE 1407
Score = 167 (63.8 bits), Expect = 3.0e-122, Sum P(6) = 3.0e-122
Identities = 41/131 (31%), Positives = 70/131 (53%)
Query: 1285 GVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
G+NL + + +V D RR SN + I GIEA R + E++ V + G V+ RHL
Sbjct: 1582 GINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHL 1641
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
+++ D M + G + R GI R+++ P+ + +FE + L A + D LR + +
Sbjct: 1642 SLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACL 1700
Query: 1404 MLGQLAPIGTG 1414
++G++ GTG
Sbjct: 1701 VVGKVVRGGTG 1711
Score = 159 (61.0 bits), Expect = 3.0e-122, Sum P(6) = 3.0e-122
Identities = 33/98 (33%), Positives = 54/98 (55%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTAN 72
+++ + FG+ S +E++++SV I + + G P GL D LG D K C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70
Query: 73 MAECPGHFGHLELAKPMFH-IGFMKTVLSIMRSVCFNC 109
+ C GH GH+EL +++ + F K L ++R C NC
Sbjct: 71 FSNCSGHLGHIELPLTVYNPLLFDKLYL-LLRGSCLNC 107
Score = 90 (36.7 bits), Expect = 3.0e-122, Sum P(6) = 3.0e-122
Identities = 30/112 (26%), Positives = 50/112 (44%)
Query: 610 DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL-LQN 668
++ V I +GELL G L K G+S L+H +E G + + K L L +L L
Sbjct: 734 ESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYR 793
Query: 669 AFSIGIGDTI----ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR 716
F++G+ D + AD K I ++ V+ + + S + G+
Sbjct: 794 GFTLGVEDILVKPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGK 845
Score = 44 (20.5 bits), Expect = 2.3e-37, Sum P(4) = 2.3e-37
Identities = 8/14 (57%), Positives = 11/14 (78%)
Query: 936 VFDAEVQKLEADRY 949
VFD+E+ KL D+Y
Sbjct: 401 VFDSEMDKLMMDKY 414
>WB|WBGene00012999 [details] [associations]
symbol:rpoa-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
HSSP:P04050 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:Z83219 EMBL:AL032648 EMBL:Z93392
PIR:A88355 PIR:T19606 RefSeq:NP_001022450.1
ProteinModelPortal:G5ED21 SMR:G5ED21 PRIDE:G5ED21
EnsemblMetazoa:Y48E1A.1a GeneID:175015 KEGG:cel:CELE_Y48E1A.1
CTD:175015 WormBase:Y48E1A.1a NextBio:886412 Uniprot:G5ED21
Length = 1737
Score = 501 (181.4 bits), Expect = 1.2e-121, Sum P(5) = 1.2e-121
Identities = 114/305 (37%), Positives = 177/305 (58%)
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQ FD +L + + S IK I L+ K+G R ++MGKRV+F+ R+VITP
Sbjct: 433 LQLRANAIFDQDLN---KGDRDSIAGIKQI---LEKKQGLFRMHMMGKRVNFACRSVITP 486
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK------TGAKYII 409
DP ++ID++G+P A LT+ E V +N+ +K L+ GPH PG +G K ++
Sbjct: 487 DPYLDIDEIGIPDIFAKKLTFTEPVNAFNVNEMKGLLRQGPHQHPGANFFVEPSGKKTML 546
Query: 410 RDDGQ----RLDL-RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIK 464
D + R+ + + L ++ +L KV RH+ +GD ++ NRQPSLHK SI+GHR +
Sbjct: 547 GDKPEEKKRRMQMAKTLNAATTENLRQTPKVLRHMKNGDMIMMNRQPSLHKPSILGHRAR 606
Query: 465 IMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
++ R+N + YNADFDGDEMN H+ QS + EV E+ V + P+ P+
Sbjct: 607 VLTGQRALRMNYAPCKAYNADFDGDEMNGHLVQSHIAQTEVREIANVGSNFLVPKDATPL 666
Query: 524 MGIVQDTLLGCRKITKRDTFIEKDVFMN-ILMWWEDFDGKV--PQPTILKPRPLWTGKQV 580
+G++QD ++ ++ RD F+ K+ FM+ +L + + ++ P PTIL P+ LWTGKQV
Sbjct: 667 LGLIQDHVVSGVLLSVRDRFLNKEDFMHLVLASFAQYSKRIEIPPPTILYPKRLWTGKQV 726
Query: 581 FNLII 585
I+
Sbjct: 727 ITTIV 731
Score = 377 (137.8 bits), Expect = 1.2e-121, Sum P(5) = 1.2e-121
Identities = 72/139 (51%), Positives = 95/139 (68%)
Query: 745 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 804
L N L+ M+ +G+KGS +N Q++ C+GQ +EGKR+ RTLP F D P +
Sbjct: 924 LFPQNALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTIAGRTLPSFRCFDPSPRA 983
Query: 805 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 864
G+++ +L G+ PQE FFH M GREGLIDTAVKTS +GY+QR ++K +E I V YD TV
Sbjct: 984 GGYIDQRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRVHYDSTV 1043
Query: 865 RNSLGDVIQFLYGEDGMDS 883
R+ G VIQF YGEDGMD+
Sbjct: 1044 RDHDGSVIQFRYGEDGMDT 1062
Score = 270 (100.1 bits), Expect = 7.9e-97, Sum P(5) = 7.9e-97
Identities = 85/277 (30%), Positives = 131/277 (47%)
Query: 472 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
R+N + YNADFDGDEMN H+ QS + EV E+ V + P+ P++G++QD +
Sbjct: 615 RMNYAPCKAYNADFDGDEMNGHLVQSHIAQTEVREIANVGSNFLVPKDATPLLGLIQDHV 674
Query: 532 LGCRKITKRDTFIEKDVFMN-ILMWWEDFDGKV--PQPTILKPRPLWTGKQVFNLI---- 584
+ ++ RD F+ K+ FM+ +L + + ++ P PTIL P+ LWTGKQV I
Sbjct: 675 VSGVLLSVRDRFLNKEDFMHLVLASFAQYSKRIEIPPPTILYPKRLWTGKQVITTIVKNC 734
Query: 585 IPKQ---INL---FRT--AAWHADN-DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTG 635
IP INL +T + W D ++ V +GELL G L K G +
Sbjct: 735 IPDGKPLINLDGKAKTPLSCWIVPGFDAPQFDMSESHVVFRQGELLVGVLDKAHFGATQF 794
Query: 636 SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI----ADAKTMETINDTI 691
L H +E G + L L +L + F++G+ D + AD K E + ++
Sbjct: 795 GLAHCAFELYGHRCGVQLLSCFSRLFTTYLQFHGFTLGVADILVVKDADGKRKEAVMESR 854
Query: 692 SKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
+ VK D + E RT+ ++ N Q
Sbjct: 855 TIGNQVVKTAFG-LPDTATPAEIKRTLAATYCNPRGQ 890
Score = 223 (83.6 bits), Expect = 1.2e-121, Sum P(5) = 1.2e-121
Identities = 47/94 (50%), Positives = 67/94 (71%)
Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK-IK 1121
++SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ A K I
Sbjct: 1225 MRSLADPGENVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKSIA 1284
Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSV 1155
TPS S+ + G ++++R +++ L+ L+ +
Sbjct: 1285 TPSASIAVIAG--TSRDRIDSIKRELDRVYLKQL 1316
Score = 198 (74.8 bits), Expect = 1.2e-121, Sum P(5) = 1.2e-121
Identities = 48/148 (32%), Positives = 77/148 (52%)
Query: 1278 LTEMALRGVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336
+T + +GVNL A H DV D SN L I+E G+EA +A+ E+ V + G
Sbjct: 1570 MTILQTQGVNLAAFFKHADVLDVNSVYSNDLNLILENYGVEACSKAITTEMNNVFAVYGI 1629
Query: 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYL 1396
V+ RHL++ D MT+ G + R G + + P+ + +FE T+ L +A + E D +
Sbjct: 1630 EVSKRHLSLTADYMTFTGQIQPFNR-GAMSSSSSPLQKMTFETTMAFLREALLHGEEDNV 1688
Query: 1397 RGVTENIMLGQLAPIGTGDCSLYLNDEM 1424
+ +++G L GTG L L+ +M
Sbjct: 1689 NSPSARLVMGALPRGGTGSFDLLLDTKM 1716
Score = 159 (61.0 bits), Expect = 1.2e-121, Sum P(5) = 1.2e-121
Identities = 33/94 (35%), Positives = 51/94 (54%)
Query: 25 PDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHL 83
P EI ++SV++I +T E G P GGL DP LG + C TC CPGH GH+
Sbjct: 25 PHEIDKLSVLKITQTKTFDEVGHPIAGGLYDPILGPDNTFDMCMTCNQYERHCPGHMGHI 84
Query: 84 ELAKPMFHIGFMKTVLSIMRSVCFNCSKILADED 117
+LA P+F+ + ++++ C +C ++ D
Sbjct: 85 QLAVPVFNPLLFQFTYNLLKGSCVHCHRLTCKGD 118
Score = 48 (22.0 bits), Expect = 4.6e-69, Sum P(4) = 4.6e-69
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 1107 VPRLREIINVAKKIKTPSLSVFLKPGVNS 1135
+P + +IN+ K KTP LS ++ PG ++
Sbjct: 735 IPDGKPLINLDGKAKTP-LSCWIVPGFDA 762
>UNIPROTKB|J9P5G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K02999 PANTHER:PTHR19376:SF11
CTD:25885 GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
RefSeq:XP_532976.3 Ensembl:ENSCAFT00000047500 GeneID:475766
KEGG:cfa:475766 Uniprot:J9P5G4
Length = 1717
Score = 484 (175.4 bits), Expect = 1.2e-120, Sum P(6) = 1.2e-120
Identities = 116/308 (37%), Positives = 173/308 (56%)
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQ H+ FD+E+ + I+ I L+ K+G R ++MGKRVD++AR+VI P
Sbjct: 394 LQSHVNIVFDSEMD---KLMMEKYPGIRQI---LEKKDGLFRKHMMGKRVDYAARSVICP 447
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
D IN +++G+P A LTYP+ VTP+N++ L++ V GP+ PG A +I +DG R
Sbjct: 448 DMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG---ASMVINEDGSR 504
Query: 416 -----LDL--------RYLKKSSDHHLELGYKVE-RHLNDGDFVLFNRQPSLHKMSIMGH 461
+DL + L ++ G K+ RH+ +GD +L NRQP+LH+ SI H
Sbjct: 505 TALSAIDLTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAH 564
Query: 462 RIKIMPYS-TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
+I+P RL+ + YNADFDGDEMN H PQS RAE L + + P+
Sbjct: 565 HARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDG 624
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM-WWEDFDGKVP--QPTILKPRPLWTG 577
+P+ G++QD ++ +T R F ++ +M +L D G+V P ILKP PLWTG
Sbjct: 625 QPLAGLIQDHMVSGANMTIRGCFFTREQYMELLYRGLTDKVGRVKLFPPAILKPFPLWTG 684
Query: 578 KQVFNLII 585
KQV + ++
Sbjct: 685 KQVVSTLL 692
Score = 371 (135.7 bits), Expect = 1.2e-120, Sum P(6) = 1.2e-120
Identities = 73/161 (45%), Positives = 103/161 (63%)
Query: 722 FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
F+ +VN N NNL+ MV +G+KGS +N Q++ +GQ +EG+
Sbjct: 865 FKEEVNHYSNEINKACMPFGLHRQFPDNNLQMMVQSGAKGSTVNTMQISCLLGQIELEGR 924
Query: 782 RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
R P ++LP F ++ P + GFV +L G+ P EFFFH M GREGL+DTAVKTS
Sbjct: 925 RPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSR 984
Query: 842 TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
+GY+QR ++K +E ++V+YD TVR+S G V+QFLYGEDG+D
Sbjct: 985 SGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1025
Score = 233 (87.1 bits), Expect = 1.2e-120, Sum P(6) = 1.2e-120
Identities = 54/107 (50%), Positives = 72/107 (67%)
Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
++ ++ +SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ VA
Sbjct: 1196 LQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVA 1255
Query: 1118 K-KIKTPSLSVFLKPGVNSTK--ERAKNVQCALEYTTLRSVTEATEV 1161
IKTP +SV P N+ K +R K+++ L L V E +V
Sbjct: 1256 SANIKTPMMSV---PVFNTKKALKRVKSLKKQLTRVCLGEVLEKIDV 1299
Score = 165 (63.1 bits), Expect = 1.2e-120, Sum P(6) = 1.2e-120
Identities = 43/145 (29%), Positives = 75/145 (51%)
Query: 1271 KKIESNMLTEMALRGVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
KK E ++ + G+NL + + +V D R SN + + GIEA R + E+R
Sbjct: 1567 KKNEKELV--LNTEGINLPELFKYAEVLDLSRLYSNDIHAMASTYGIEAALRVIEKEIRD 1624
Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
V + G V+ RHL+++ D M + G + R GI R+++ P+ + +FE + L A +
Sbjct: 1625 VFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATM 1683
Query: 1390 FAESDYLRGVTENIMLGQLAPIGTG 1414
D LR + +++G++ GTG
Sbjct: 1684 MGSHDELRSPSACLVVGKVVKGGTG 1708
Score = 156 (60.0 bits), Expect = 1.2e-120, Sum P(6) = 1.2e-120
Identities = 33/98 (33%), Positives = 53/98 (54%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTAN 72
+++ + FG+ S +E++++SV I + + G P GL D LG D K C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70
Query: 73 MAECPGHFGHLELAKPMFH-IGFMKTVLSIMRSVCFNC 109
C GH GH+EL +++ + F K L ++R C NC
Sbjct: 71 FNNCSGHLGHIELPLTVYNPLLFDKLYL-LLRGSCLNC 107
Score = 87 (35.7 bits), Expect = 1.2e-120, Sum P(6) = 1.2e-120
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 610 DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL-LQN 668
++ V I +GELL G L K G+S L+H +E G + + K L L +L L
Sbjct: 734 ESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYR 793
Query: 669 AFSIGIGDTIADAK 682
F++G+ D + K
Sbjct: 794 GFTLGVEDILVKRK 807
Score = 43 (20.2 bits), Expect = 6.6e-36, Sum P(4) = 6.6e-36
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 936 VFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVD 983
VFD+E+ KL ++Y +I D + + KR+ + A+ D
Sbjct: 401 VFDSEMDKLMMEKYPGIRQILEKKDGLFRKHMMGKRVDYAARSVICPD 448
Score = 40 (19.1 bits), Expect = 2.8e-86, Sum P(6) = 2.8e-86
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 760 KGSFINISQ-MTACVGQQNVE 779
KG+F+N SQ + A V N+E
Sbjct: 1086 KGAFLNYSQKIQAAVKALNLE 1106
>UNIPROTKB|E2R0G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
Ensembl:ENSCAFT00000012228 Uniprot:E2R0G4
Length = 1746
Score = 484 (175.4 bits), Expect = 1.3e-120, Sum P(6) = 1.3e-120
Identities = 116/308 (37%), Positives = 173/308 (56%)
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQ H+ FD+E+ + I+ I L+ K+G R ++MGKRVD++AR+VI P
Sbjct: 406 LQSHVNIVFDSEMD---KLMMEKYPGIRQI---LEKKDGLFRKHMMGKRVDYAARSVICP 459
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
D IN +++G+P A LTYP+ VTP+N++ L++ V GP+ PG A +I +DG R
Sbjct: 460 DMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG---ASMVINEDGSR 516
Query: 416 -----LDL--------RYLKKSSDHHLELGYKVE-RHLNDGDFVLFNRQPSLHKMSIMGH 461
+DL + L ++ G K+ RH+ +GD +L NRQP+LH+ SI H
Sbjct: 517 TALSAIDLTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAH 576
Query: 462 RIKIMPYS-TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
+I+P RL+ + YNADFDGDEMN H PQS RAE L + + P+
Sbjct: 577 HARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDG 636
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM-WWEDFDGKVP--QPTILKPRPLWTG 577
+P+ G++QD ++ +T R F ++ +M +L D G+V P ILKP PLWTG
Sbjct: 637 QPLAGLIQDHMVSGANMTIRGCFFTREQYMELLYRGLTDKVGRVKLFPPAILKPFPLWTG 696
Query: 578 KQVFNLII 585
KQV + ++
Sbjct: 697 KQVVSTLL 704
Score = 371 (135.7 bits), Expect = 1.3e-120, Sum P(6) = 1.3e-120
Identities = 73/161 (45%), Positives = 103/161 (63%)
Query: 722 FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
F+ +VN N NNL+ MV +G+KGS +N Q++ +GQ +EG+
Sbjct: 877 FKEEVNHYSNEINKACMPFGLHRQFPDNNLQMMVQSGAKGSTVNTMQISCLLGQIELEGR 936
Query: 782 RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
R P ++LP F ++ P + GFV +L G+ P EFFFH M GREGL+DTAVKTS
Sbjct: 937 RPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSR 996
Query: 842 TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
+GY+QR ++K +E ++V+YD TVR+S G V+QFLYGEDG+D
Sbjct: 997 SGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1037
Score = 233 (87.1 bits), Expect = 1.3e-120, Sum P(6) = 1.3e-120
Identities = 54/107 (50%), Positives = 72/107 (67%)
Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
++ ++ +SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ VA
Sbjct: 1208 LQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVA 1267
Query: 1118 K-KIKTPSLSVFLKPGVNSTK--ERAKNVQCALEYTTLRSVTEATEV 1161
IKTP +SV P N+ K +R K+++ L L V E +V
Sbjct: 1268 SANIKTPMMSV---PVFNTKKALKRVKSLKKQLTRVCLGEVLEKIDV 1311
Score = 165 (63.1 bits), Expect = 1.3e-120, Sum P(6) = 1.3e-120
Identities = 43/145 (29%), Positives = 75/145 (51%)
Query: 1271 KKIESNMLTEMALRGVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
KK E ++ + G+NL + + +V D R SN + + GIEA R + E+R
Sbjct: 1596 KKNEKELV--LNTEGINLPELFKYAEVLDLSRLYSNDIHAMASTYGIEAALRVIEKEIRD 1653
Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
V + G V+ RHL+++ D M + G + R GI R+++ P+ + +FE + L A +
Sbjct: 1654 VFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATM 1712
Query: 1390 FAESDYLRGVTENIMLGQLAPIGTG 1414
D LR + +++G++ GTG
Sbjct: 1713 MGSHDELRSPSACLVVGKVVKGGTG 1737
Score = 156 (60.0 bits), Expect = 1.3e-120, Sum P(6) = 1.3e-120
Identities = 33/98 (33%), Positives = 53/98 (54%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTAN 72
+++ + FG+ S +E++++SV I + + G P GL D LG D K C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70
Query: 73 MAECPGHFGHLELAKPMFH-IGFMKTVLSIMRSVCFNC 109
C GH GH+EL +++ + F K L ++R C NC
Sbjct: 71 FNNCSGHLGHIELPLTVYNPLLFDKLYL-LLRGSCLNC 107
Score = 87 (35.7 bits), Expect = 1.3e-120, Sum P(6) = 1.3e-120
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 610 DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL-LQN 668
++ V I +GELL G L K G+S L+H +E G + + K L L +L L
Sbjct: 746 ESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYR 805
Query: 669 AFSIGIGDTIADAK 682
F++G+ D + K
Sbjct: 806 GFTLGVEDILVKRK 819
Score = 43 (20.2 bits), Expect = 6.8e-35, Sum P(5) = 6.8e-35
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 936 VFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVD 983
VFD+E+ KL ++Y +I D + + KR+ + A+ D
Sbjct: 413 VFDSEMDKLMMEKYPGIRQILEKKDGLFRKHMMGKRVDYAARSVICPD 460
Score = 40 (19.1 bits), Expect = 3.3e-86, Sum P(6) = 3.3e-86
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 760 KGSFINISQ-MTACVGQQNVE 779
KG+F+N SQ + A V N+E
Sbjct: 1098 KGAFLNYSQKIQAAVKALNLE 1118
Score = 38 (18.4 bits), Expect = 6.8e-35, Sum P(5) = 6.8e-35
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 829 REGLIDTAV-KTSETGYIQRRLVKAMEDI 856
RE L TA+ K +TG+ L +ED+
Sbjct: 272 REHL--TALWKNEDTGFFLNYLFSGLEDV 298
>UNIPROTKB|E1BIX2 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11 CTD:25885
GeneTree:ENSGT00550000074861 EMBL:DAAA02031123 IPI:IPI00714586
RefSeq:NP_001179805.1 UniGene:Bt.52712 PRIDE:E1BIX2
Ensembl:ENSBTAT00000008496 GeneID:536316 KEGG:bta:536316
NextBio:20876927 Uniprot:E1BIX2
Length = 1717
Score = 592 (213.5 bits), Expect = 1.9e-120, Sum P(4) = 1.9e-120
Identities = 184/587 (31%), Positives = 292/587 (49%)
Query: 610 DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL-LQN 668
++ V I GELL G L K G+S L+H +E G + + + L L +L L
Sbjct: 734 ESQVIIRAGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYR 793
Query: 669 AFSIGIGDTI----ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR-------- 716
F++G+ D + AD + I D+ V+ + + S + G+
Sbjct: 794 GFTLGVEDILVKPKADVRRHGIIEDSTHCGPRAVRAALNLPEAVSCDEVQGKWQDAHLSK 853
Query: 717 -----TMME-SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
M++ F+ +VN N NNL+ MV +G+KGS +N Q++
Sbjct: 854 DQRDFNMIDLKFKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQIS 913
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
+GQ +EG+R P ++LP F ++ P + GFV +L G+ P EFFFH M GRE
Sbjct: 914 CLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGRE 973
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GL+DTAVKTS +GY+QR ++K +E ++V+YD TVR+S G V+QFLYGEDG+D ++Q
Sbjct: 974 GLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIP--KTQF 1031
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
L K+ F + +E+ ++ + + +L D K ++ R ++K +
Sbjct: 1032 LQP---KQFPFLTS-NYEVIMKSKHLHEVLSR-ADPQKALRHFR-----AIKKWHSKHSN 1081
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL---K 1007
+ S + +K L N + T + + R P + + +D+ R K
Sbjct: 1082 TLLRKGAFLNYSQKIQAAVKAL--NLEGTNQ-NGRSPETYQMLRMWAELDEQSRRKYQKK 1138
Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASK----------RVLKEHRLTREAFEWVIGE 1057
P DP S+ + F ++ TF K + + + + + + +
Sbjct: 1139 AAPCPDP-SLSVWRPDIYFASV--SETFEKKMDDYSCEWAAQAERSYEKSGLSLDSLRTL 1195
Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
++ ++ +SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ VA
Sbjct: 1196 LQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVA 1255
Query: 1118 KK-IKTPSLSVFLKPGVNSTK--ERAKNVQCALEYTTLRSVTEATEV 1161
IKTP +SV P N+ K ++ K+++ L L V E +V
Sbjct: 1256 SSNIKTPMMSV---PVFNTKKALKKVKSLKKQLTRVCLGEVLEKIDV 1299
Score = 479 (173.7 bits), Expect = 1.9e-120, Sum P(4) = 1.9e-120
Identities = 114/308 (37%), Positives = 173/308 (56%)
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQ H+ FD+E+ + I+ I L+ K+G R ++MGKRVD++AR+VI P
Sbjct: 394 LQSHVNIVFDSEMD---KLMMEKYPGIRQI---LEKKDGLFRKHMMGKRVDYAARSVICP 447
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
D I+ +++G+P A LTYP+ VTP+N++ L++ V GP+ PG A +I +DG R
Sbjct: 448 DMYISTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNMHPG---ASMVINEDGSR 504
Query: 416 L-----DL--------RYLKKSSDHHLELGYKVE-RHLNDGDFVLFNRQPSLHKMSIMGH 461
DL + L ++ G K+ RH+ +GD +L NRQP+LH+ SI H
Sbjct: 505 TALSASDLTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAH 564
Query: 462 RIKIMPYS-TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
R +++P RL+ + YNADFDGDEMN H PQS RAE L + + P+
Sbjct: 565 RARVLPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDG 624
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM-WWEDFDGKVP--QPTILKPRPLWTG 577
+P+ G++QD ++ +T R F ++ +M ++ D G+V P ILKP PLWTG
Sbjct: 625 QPLAGLIQDHMVSGANMTIRGCFFNREQYMELVFRGLTDKVGRVKLFPPAILKPFPLWTG 684
Query: 578 KQVFNLII 585
KQV + ++
Sbjct: 685 KQVVSTLL 692
Score = 167 (63.8 bits), Expect = 1.9e-120, Sum P(4) = 1.9e-120
Identities = 44/145 (30%), Positives = 75/145 (51%)
Query: 1273 IESNMLTEMALR--GVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
I S E+ L G+NL + + +V D RR SN + + GIEA R + E++
Sbjct: 1565 INSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIHAMASTYGIEAALRVIEKEIKD 1624
Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
V + G V+ RHL+++ D M + G + R GI R+++ P+ + +FE + L A +
Sbjct: 1625 VFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATL 1683
Query: 1390 FAESDYLRGVTENIMLGQLAPIGTG 1414
D LR + +++G++ GTG
Sbjct: 1684 MGSHDELRSPSACLVVGKVVKGGTG 1708
Score = 154 (59.3 bits), Expect = 1.9e-120, Sum P(4) = 1.9e-120
Identities = 32/98 (32%), Positives = 53/98 (54%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTAN 72
+++ + FG+ S +E++++SV I + + G P GL D LG D K C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSVNGLYDLALGPADSKEVCSTCVQD 70
Query: 73 MAECPGHFGHLELAKPMFH-IGFMKTVLSIMRSVCFNC 109
C GH GH++L +++ + F K L ++R C NC
Sbjct: 71 FTNCSGHLGHIDLPLTVYNPLLFDKLYL-LLRGSCLNC 107
Score = 43 (20.2 bits), Expect = 6.7e-17, Sum P(3) = 6.7e-17
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 936 VFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVD 983
VFD+E+ KL ++Y +I D + + KR+ + A+ D
Sbjct: 401 VFDSEMDKLMMEKYPGIRQILEKKDGLFRKHMMGKRVDYAARSVICPD 448
Score = 37 (18.1 bits), Expect = 2.7e-16, Sum P(3) = 2.7e-16
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 139 DACKNKTKCEGGDEIDVPGQDGEEPLKKNK 168
DA K K + +E+D ++ EE ++ K
Sbjct: 1411 DASDAKRKEKQEEEVDYDSEEEEEKEEEEK 1440
>ZFIN|ZDB-GENE-030131-5286 [details] [associations]
symbol:polr1a "polymerase (RNA) I polypeptide A"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 ZFIN:ZDB-GENE-030131-5286
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861 EMBL:AL929267
EMBL:CU694378 IPI:IPI00934858 Ensembl:ENSDART00000114501
ArrayExpress:E7F710 Bgee:E7F710 Uniprot:E7F710
Length = 1710
Score = 458 (166.3 bits), Expect = 1.5e-119, Sum P(6) = 1.5e-119
Identities = 104/275 (37%), Positives = 159/275 (57%)
Query: 329 LKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERL 388
L+ KEG R ++MGKRVD++AR+VI PD I +++G+P A LTYP+ VTP+N++ +
Sbjct: 427 LEKKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKEM 486
Query: 389 KELVEYGPHPPPGKTGAKYIIRDDGQRLDL-------------RYLKKSSDHHLELGYK- 434
++ V GP+ PG T ++ +DG R L + L S+ H + K
Sbjct: 487 RQAVLNGPNIHPGAT---MVVNEDGSRTILSSTNQTQREAVAKQLLTPSTGQH-RIPMKI 542
Query: 435 VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNMH 493
V RH+ +GD +L NRQP+LH+ SI H +I+P RL+ + YNADFDGDEMN H
Sbjct: 543 VNRHIKNGDVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAH 602
Query: 494 VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
PQS +RAE L+ + + P+ +P+ G++QD ++ +T R F +D + ++
Sbjct: 603 FPQSELSRAEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYTALV 662
Query: 554 M-WWEDFDGKVP--QPTILKPRPLWTGKQVFNLII 585
D G+V PT++KP LWTGKQV + ++
Sbjct: 663 YRGLTDKIGRVKLLPPTLIKPVLLWTGKQVVSTLL 697
Score = 437 (158.9 bits), Expect = 1.5e-119, Sum P(6) = 1.5e-119
Identities = 109/284 (38%), Positives = 157/284 (55%)
Query: 610 DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL-LQN 668
++ V I +GELL G L K G+S L+H +E G + + K L L +L L
Sbjct: 739 ESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYR 798
Query: 669 AFSIGIGDTIA-DAKTMETINDTISKAKNNVKNLIKQA------QDKSLE-PEPGRTMME 720
F++G+ D + D T +A N+ + QD L + M++
Sbjct: 799 GFTLGVEDILVKDGAKSVTCGSKALQAAFNLPASAEDTEARERWQDAHLNIDQRDFNMVD 858
Query: 721 -SFENKVNQVLNTARDEAGS-SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNV 778
F+ +VNQV N +S E NNL+ MV +G+KGS +N Q++ +GQ +
Sbjct: 859 LKFKEEVNQVNNNINKVCMPLGLHRSFPE-NNLQMMVQSGAKGSTVNTMQISCLLGQIEL 917
Query: 779 EGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 838
EG+R P ++LP F + P S GFV +L G+ P EFFFH M GREGL+DTAVK
Sbjct: 918 EGRRPPLMPSGKSLPCFQPYEPQPRSGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVK 977
Query: 839 TSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
TS +GY+QR ++K +E ++V+YD TVR+S G V+QFLYGEDG+D
Sbjct: 978 TSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1021
Score = 220 (82.5 bits), Expect = 1.5e-119, Sum P(6) = 1.5e-119
Identities = 60/171 (35%), Positives = 92/171 (53%)
Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
++ ++ ++L PGE +G VAAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ VA
Sbjct: 1192 LQLKWQRALCDPGEAVGLVAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLVA 1251
Query: 1118 KK-IKTPSLS---VFLKPGVNSTKERAKNVQ--CALEYTTLRSVTEATEVWYDPDPMGTI 1171
IKTP +S V K + K K + C E +V E+ + +
Sbjct: 1252 SSNIKTPMMSIPVVMNKKALKQVKTLRKKITRVCLSEVLHKVNVIESFRMPKKETLKSRV 1311
Query: 1172 IEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS--MAAVA 1220
+ F+ D+ + P++I ++ + + KKL+ +AA++
Sbjct: 1312 FKITFHFLPPERYQQDKLLNPDEILHYMEQTFFRMLLEAIKKLTAKLAAIS 1362
Score = 176 (67.0 bits), Expect = 1.5e-119, Sum P(6) = 1.5e-119
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTANMAEC 76
+ FG+ S DE R++SV I + + + G GL D LG D K C TC + + C
Sbjct: 15 MSFGLFSADETRKLSVKTITNPQLLDNVGNAAANGLYDLALGPADNKEICSTCMQDFSSC 74
Query: 77 PGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNC 109
PGHFGH+EL P+++ F + ++R C +C
Sbjct: 75 PGHFGHIELPLPVYNPLFFDKLYLLIRGSCLSC 107
Score = 149 (57.5 bits), Expect = 1.5e-119, Sum P(6) = 1.5e-119
Identities = 36/131 (27%), Positives = 66/131 (50%)
Query: 1285 GVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
G+N+ + + D+ D +R SN + + GIE R + E++ V + G V+ RHL
Sbjct: 1572 GINIHEMFKYADILDLKRLYSNEVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHL 1631
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
+++ D M + G + R GI N + P+ + +FE + L A + D L + +
Sbjct: 1632 SLVADYMCFEGVYKPLNRFGIQSNSS-PLQQMTFETSFKFLKQATMLGSYDKLSSPSACL 1690
Query: 1404 MLGQLAPIGTG 1414
++G++ GTG
Sbjct: 1691 VVGKVVKGGTG 1701
Score = 59 (25.8 bits), Expect = 1.6e-36, Sum P(5) = 1.6e-36
Identities = 13/60 (21%), Positives = 32/60 (53%)
Query: 698 VKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTA 757
++N++ Q + + P PG + E+ + V +L T +D+ + K + E + +++T+
Sbjct: 138 IENVLNQFLESNPSP-PGEEIQETLNDFVKPILETRKDKQHTDPVKHICEKKS--SLITS 194
Score = 50 (22.7 bits), Expect = 3.2e-61, Sum P(5) = 3.2e-61
Identities = 36/178 (20%), Positives = 70/178 (39%)
Query: 1000 DKLQERLKVVPGE--DPLSVEAQKN--ATLFFNILLRSTF----ASKRVLKEHRLTREAF 1051
DK+ R+K++P P+ + K +TL N++ ++ K + +E+
Sbjct: 668 DKIG-RVKLLPPTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTGKAKIPGKAWVKESP 726
Query: 1052 EWVIGEIESRFLQS--LVAPGEMI-GCVAAQSIGEPATQMTLNTFH-YAGVSAKNVTLGV 1107
V G + +S ++ GE++ G + G A + + Y G ++ + +
Sbjct: 727 RPVPGYVPESMCESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCL 786
Query: 1108 PRL-REIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYD 1164
RL + + + + +K G S +K +Q A TEA E W D
Sbjct: 787 ARLFTAYLQLYRGFTLGVEDILVKDGAKSVTCGSKALQAAFNLPASAEDTEARERWQD 844
Score = 48 (22.0 bits), Expect = 4.5e-05, Sum P(2) = 4.5e-05
Identities = 20/71 (28%), Positives = 33/71 (46%)
Query: 93 GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKK-ILDACKNKTKCEGGD 151
G + V S+ RS F C+ DD+ + A R + + DA +K K + +
Sbjct: 1382 GADREVNSLNRSHVFRCN------DDNGGEDAENERIVDDEANEGDADATDSKRKEKQEE 1435
Query: 152 EIDVPGQDGEE 162
E+D ++GEE
Sbjct: 1436 EVDYESEEGEE 1446
Score = 47 (21.6 bits), Expect = 1.5e-119, Sum P(6) = 1.5e-119
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 1236 NDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNM 1277
NDDN + RI++DEA +G D A D +K E +
Sbjct: 1399 NDDNGGEDAENERIVDDEANEG---DADATDSKRKEKQEEEV 1437
Score = 45 (20.9 bits), Expect = 2.0e-50, Sum P(3) = 2.0e-50
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 722 FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
FE V + LN ++ SS + ++ + K + A GS+ +S +AC+
Sbjct: 1640 FEG-VYKPLNRFGIQSNSSPLQQMTFETSFKFLKQATMLGSYDKLSSPSACL 1690
Score = 44 (20.5 bits), Expect = 2.0e-76, Sum P(6) = 2.0e-76
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 485 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 517
F G +M+ + F LEL++VP C P
Sbjct: 284 FSGFDMD-NSDNGFNPEVFFLELLVVPPCRYRP 315
Score = 44 (20.5 bits), Expect = 1.9e-17, Sum P(3) = 1.9e-17
Identities = 21/81 (25%), Positives = 38/81 (46%)
Query: 154 DVPGQDGE-EPL---KKNKGGCGAQQPKLTIEGMKMIAEYKAQR-KKNDDQEQ--LPEPV 206
D G+D E E + + N+G A K E + +Y+++ ++ DQEQ + E
Sbjct: 1401 DNGGEDAENERIVDDEANEGDADATDSKRK-EKQEEEVDYESEEGEEGSDQEQEEVAEEQ 1459
Query: 207 ERKQTLTAERVLGVLKRISDE 227
E Q ++ E +R++ E
Sbjct: 1460 EASQEVSEEGSTESQQRVNSE 1480
Score = 40 (19.1 bits), Expect = 6.6e-08, Sum P(3) = 6.6e-08
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 1288 LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAIL 1346
LL ++ E A T L + E + + ++ L ++ V D Y + HL L
Sbjct: 345 LLTLIADEKTKAIEGTQTELEQSSEAPKVTEIDQSFLTSIQGVTLTDKLYSTWIHLQSL 403
Score = 37 (18.1 bits), Expect = 7.0e-60, Sum P(5) = 7.0e-60
Identities = 10/62 (16%), Positives = 29/62 (46%)
Query: 717 TMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 776
++ E+F++ V LN + SA ++++ L+ ++ + + + + V Q
Sbjct: 1154 SVSETFDSIVESYLNQFNIKQEFSASSETTDADRLRNLLQLKWQRALCDPGEAVGLVAAQ 1213
Query: 777 NV 778
++
Sbjct: 1214 SI 1215
>MGI|MGI:1096397 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009303 "rRNA transcription" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] Reactome:REACT_78136 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 MGI:MGI:1096397 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086
CleanEx:MM_RPA1 Reactome:REACT_86751 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 CTD:25885 HOGENOM:HOG000205401
HOVERGEN:HBG017741 OrthoDB:EOG41VK23 ChiTaRS:POLR1A EMBL:AF000938
EMBL:BC053744 IPI:IPI00313726 PIR:T13961 RefSeq:NP_033114.3
UniGene:Mm.135581 ProteinModelPortal:O35134 SMR:O35134
STRING:O35134 PhosphoSite:O35134 PaxDb:O35134 PRIDE:O35134
Ensembl:ENSMUST00000055296 GeneID:20019 KEGG:mmu:20019
UCSC:uc009chv.2 GeneTree:ENSGT00550000074861 InParanoid:O35134
NextBio:297531 Bgee:O35134 Genevestigator:O35134
GermOnline:ENSMUSG00000049553 Uniprot:O35134
Length = 1717
Score = 485 (175.8 bits), Expect = 1.3e-118, Sum P(7) = 1.3e-118
Identities = 118/308 (38%), Positives = 174/308 (56%)
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQ H+ FD+E+ + + G I+ I L+ KEG R ++MGKRVD++AR+VI P
Sbjct: 401 LQSHVNIVFDSEMD-KLMLEKYPG--IRQI---LEKKEGLFRKHMMGKRVDYAARSVICP 454
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
D IN +++G+P A LTYP+ VTP+N++ L++ V GP+ PG A +I +DG R
Sbjct: 455 DMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG---ASMVINEDGSR 511
Query: 416 LDL-------------RYLKKSSDHHLELGYKVE-RHLNDGDFVLFNRQPSLHKMSIMGH 461
L + L ++ G KV RH+ +GD +L NRQP+LH+ SI H
Sbjct: 512 TALSSVDAAQREAVAKQLLTPATGAPKPQGTKVVCRHVKNGDILLLNRQPTLHRPSIQAH 571
Query: 462 RIKIMPYS-TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
R +I+P RL+ + YNADFDGDEMN H PQS RAE L + + P+
Sbjct: 572 RARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDG 631
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM-WWEDFDGKVP--QPTILKPRPLWTG 577
+P+ G++QD ++ +T R F ++ +M ++ D G+V P ILKP PLWTG
Sbjct: 632 QPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTG 691
Query: 578 KQVFNLII 585
KQV + ++
Sbjct: 692 KQVVSTLL 699
Score = 370 (135.3 bits), Expect = 1.3e-118, Sum P(7) = 1.3e-118
Identities = 72/161 (44%), Positives = 103/161 (63%)
Query: 722 FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
F+ +VN N NNL+ MV +G+KGS +N Q++ +GQ +EG+
Sbjct: 872 FKEEVNHYSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGR 931
Query: 782 RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
R P ++LP F ++ P + GFV +L G+ P EFFFH M GREGL+DTAVKTS
Sbjct: 932 RPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSR 991
Query: 842 TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
+GY+QR ++K +E ++++YD TVR+S G V+QFLYGEDG+D
Sbjct: 992 SGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLD 1032
Score = 233 (87.1 bits), Expect = 1.3e-118, Sum P(7) = 1.3e-118
Identities = 73/222 (32%), Positives = 115/222 (51%)
Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
++ ++ +SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ VA
Sbjct: 1203 LQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVA 1262
Query: 1118 K-KIKTPSLSVFLKPGVNSTK--ERAKNVQCALEYTTLRSVTEATEVWYDPDPMGT---- 1170
IKTP +SV P ++ K ++ K+++ L L V + ++ + MG
Sbjct: 1263 SANIKTPMMSV---PVFDTKKALKKVKSLKKRLTRVCLGEVLQKVDI-QESFCMGEKRNK 1318
Query: 1171 --IIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMM--VDKKLSMAAVAEKINQE 1226
+ E +F+ Y ++ + PE I ++ + +M + KK + A+ +N
Sbjct: 1319 FQVYELRFQFLPHAYYQQEKCLRPEDILHFM-ETRFFKLLMEAIKKKKNKASAFRNVNSR 1377
Query: 1227 --FDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAED 1266
DL +D D + DE +G + D AE+
Sbjct: 1378 RATQKDL-----NDTEDSGRSQREEERDEEEEGNIVDAEAEE 1414
Score = 157 (60.3 bits), Expect = 1.3e-118, Sum P(7) = 1.3e-118
Identities = 37/131 (28%), Positives = 69/131 (52%)
Query: 1285 GVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
G+NL + + ++ D RR SN + + GIEA R + E++ V + G V+ RHL
Sbjct: 1579 GINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHL 1638
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
+++ D M + G + R GI ++ + P+ + +FE + L A + D L+ + +
Sbjct: 1639 SLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACL 1697
Query: 1404 MLGQLAPIGTG 1414
++G++ GTG
Sbjct: 1698 VVGKVVKGGTG 1708
Score = 147 (56.8 bits), Expect = 1.3e-118, Sum P(7) = 1.3e-118
Identities = 28/97 (28%), Positives = 50/97 (51%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTAN 72
+++ + FG+ S +E++++SV I + + G P GL D LG D K C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATCVQD 70
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNC 109
C GH GH++L +++ + ++R C +C
Sbjct: 71 FNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSC 107
Score = 85 (35.0 bits), Expect = 1.3e-118, Sum P(7) = 1.3e-118
Identities = 29/112 (25%), Positives = 49/112 (43%)
Query: 610 DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL-LQN 668
++ V I +GELL G L K G+S L+H +E G + + + L L +L L
Sbjct: 741 ESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYR 800
Query: 669 AFSIGIGDTI----ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR 716
F++G+ D + AD I ++ VK + + S + G+
Sbjct: 801 GFTLGVEDILVKPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDEIQGK 852
Score = 44 (20.5 bits), Expect = 1.3e-118, Sum P(7) = 1.3e-118
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 184 KMIAEYKAQRKKNDDQE--QLPEPV 206
K+I Y A K DQE +LPE V
Sbjct: 222 KLIITYPATVHKKSDQEGTELPEGV 246
Score = 40 (19.1 bits), Expect = 1.7e-33, Sum P(5) = 1.7e-33
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 936 VFDAEVQKLEADRY 949
VFD+E+ KL ++Y
Sbjct: 408 VFDSEMDKLMLEKY 421
Score = 39 (18.8 bits), Expect = 1.4e-71, Sum P(6) = 1.4e-71
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 372 LNLTYPETVTPYNIERLKELVEYGPHPP 399
L +TYP TV + + EL E P P
Sbjct: 223 LIITYPATVHKKSDQEGTELPEGVPEAP 250
Score = 37 (18.1 bits), Expect = 3.8e-84, Sum P(7) = 3.8e-84
Identities = 11/62 (17%), Positives = 28/62 (45%)
Query: 717 TMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 776
++ E+FE K++ +A S +KS + L+ ++ + S + + + Q
Sbjct: 1165 SVSETFEKKIDDFSQEWAAQAERSYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQ 1224
Query: 777 NV 778
++
Sbjct: 1225 SI 1226
>UNIPROTKB|G4NBX7 [details] [associations]
symbol:MGG_01158 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
EMBL:CM001235 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0043581 GO:GO:0003899
KO:K02999 PANTHER:PTHR19376:SF11 RefSeq:XP_003717763.1
ProteinModelPortal:G4NBX7 EnsemblFungi:MGG_01158T0 GeneID:2675173
KEGG:mgr:MGG_01158 Uniprot:G4NBX7
Length = 1719
Score = 459 (166.6 bits), Expect = 3.4e-118, Sum P(5) = 3.4e-118
Identities = 114/309 (36%), Positives = 170/309 (55%)
Query: 265 QLAMIIRHNENLRR--QERNGAPAHIISEFAQLLQFHIATYFDN-ELPGQPRATQRSGRP 321
+L I R +N +R+G I+ E LQ + T DN + P Q A +
Sbjct: 412 KLTQIFRDLQNPTSLLSQRHGKDTTILHEAWTELQDCVNTLIDNTKSPTQGAAAKALEEG 471
Query: 322 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 381
IK +L+ KEG R N+MGKRV+++AR+VI+PDP I +++GVP A LTYPE VT
Sbjct: 472 IKQ---KLEKKEGLFRKNMMGKRVNYAARSVISPDPNIETNEIGVPPVFARKLTYPEPVT 528
Query: 382 PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY-------- 433
+N +++ V GP PG A I ++GQ ++LR KS + L
Sbjct: 529 SHNFRDMQQAVINGPDKWPG---AAAIENENGQIVNLR--NKSQEERSSLANQLLAPTSN 583
Query: 434 --------KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNAD 484
KV RH+++GD VL NRQP+LHK SIMGHR++++P T R++ + + YNAD
Sbjct: 584 NSGNMRNKKVHRHISNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNAD 643
Query: 485 FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
FDGDEMNMH PQ+ R E L+L +S +P+ G++QD L + +DT++
Sbjct: 644 FDGDEMNMHFPQNEVARTEALQLADTDHQYISGTQGKPLRGLIQDHLSVSVALCNKDTYL 703
Query: 545 EKDVFMNIL 553
++ + ++
Sbjct: 704 DRSAYHELV 712
Score = 386 (140.9 bits), Expect = 3.7e-110, Sum P(5) = 3.7e-110
Identities = 90/257 (35%), Positives = 137/257 (53%)
Query: 434 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNM 492
KV RH+++GD VL NRQP+LHK SIMGHR++++P T R++ + + YNADFDGDEMNM
Sbjct: 592 KVHRHISNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNM 651
Query: 493 HVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNI 552
H PQ+ R E L+L +S +P+ G++QD L + +DT++++ + +
Sbjct: 652 HFPQNEVARTEALQLADTDHQYISGTQGKPLRGLIQDHLSVSVALCNKDTYLDRSAYHEL 711
Query: 553 LM-WWEDFDGKVPQ-------PTILKPRPLWTGKQVFNLII----PKQI-NLFRTAAWHA 599
+ G + + P I+KP+ WTGKQV ++ P +L+ T
Sbjct: 712 VYNALRPESGHILRERIELVPPAIIKPKARWTGKQVITTVLRNIRPLDCGDLWMTGKTQV 771
Query: 600 DNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW 659
+ + + V GE +SG L K LG S+G L+H + E GP A K L
Sbjct: 772 PAHAWGVHSEEGQVLFRDGEFISGILDKAQLGPSSGGLVHAVHEVYGPAIAGKLLSAMGR 831
Query: 660 LVNYWLLQNAFSIGIGD 676
L+ +L AF+ G+ D
Sbjct: 832 LLTRYLNMRAFTCGMDD 848
Score = 346 (126.9 bits), Expect = 3.4e-118, Sum P(5) = 3.4e-118
Identities = 69/165 (41%), Positives = 106/165 (64%)
Query: 718 MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
+M S ++Q + TA G Q N ++AM +G+KG +N + ++ +GQQ
Sbjct: 913 VMNSGSKHLSQDITTACLPKGLEKQ---FPKNQMQAMTISGAKGGQVNANLISCNLGQQV 969
Query: 778 VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
+EG+R+P ++LP F + + G++ N +L G+ PQE++FH M GREGLIDTAV
Sbjct: 970 LEGRRVPLMVSGKSLPCFKPFETDIRAGGYIVNRFLTGIRPQEYYFHHMAGREGLIDTAV 1029
Query: 838 KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
KTS +GY+QR L+K ME + + YD +VR++ G ++QFLYGEDG+D
Sbjct: 1030 KTSRSGYLQRCLIKGMEGLEIGYDNSVRDADGSLVQFLYGEDGLD 1074
Score = 247 (92.0 bits), Expect = 3.4e-118, Sum P(5) = 3.4e-118
Identities = 51/86 (59%), Positives = 67/86 (77%)
Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
RL R+A E V+ +++++SLV PGE +G VA QS+GEP+TQMTLNTFH AG SAKNVT
Sbjct: 1190 RLNRKAAEKVLS---AKYMRSLVHPGEAVGIVAGQSVGEPSTQMTLNTFHLAGHSAKNVT 1246
Query: 1105 LGVPRLREIINVAK-KIKTPSLSVFL 1129
LG+PRLRE++ A KI TPS+++ L
Sbjct: 1247 LGIPRLRELLMTASSKISTPSMTLIL 1272
Score = 201 (75.8 bits), Expect = 3.4e-118, Sum P(5) = 3.4e-118
Identities = 55/161 (34%), Positives = 81/161 (50%)
Query: 13 AKVRMVQFGILSPDEIRQMSVVQIEHGETTERG-KPKPGGLSDPRLGTIDRKMKCETCTA 71
+ + V F +LS DEIR SV +IE+ T + P PGGL DP LG + C TC
Sbjct: 9 SSIDSVSFELLSADEIRAFSVRRIENDSTFDTLLNPVPGGLYDPALGAWGDSV-CATCNL 67
Query: 72 NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI-LADEDDHKFKQALKIRNP 130
+ CPGH GH+EL P++H FM VL ++RS C C + + D +++ ++
Sbjct: 68 GPSACPGHPGHIELPVPVYHPVFMDQVLRLLRSQCAYCHRFRMRRRDINRYICLFRLLQY 127
Query: 131 KNRLK-KILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGG 170
+ K LD + +G E D P + GE + +GG
Sbjct: 128 GLLAEAKRLDLIGDSL--DGVSEGDTP-KGGESETEDAQGG 165
Score = 174 (66.3 bits), Expect = 3.4e-118, Sum P(5) = 3.4e-118
Identities = 42/141 (29%), Positives = 72/141 (51%)
Query: 1285 GVNLLAVMCHED-VDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
G NL A+ + ++ R ++N + ++E+ G+EA R ++ ELR V V+ RHL
Sbjct: 1571 GSNLRAMQQYGSFINPNRISTNDVAAVLEIYGVEACRANIIRELRAVFESHAITVDNRHL 1630
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
++ D MT G R G++ N P + SFE T+ L DA + + D L + +
Sbjct: 1631 NLIADHMTRSGGFTPFNRMGLSGN-VSPFTKMSFETTLAFLKDAVLDGDWDDLSTPSGRL 1689
Query: 1404 MLGQLAPIGTGDCSLYLNDEM 1424
++G+L +GTG ++ M
Sbjct: 1690 VMGRLGHVGTGAFDVFTQAPM 1710
Score = 47 (21.6 bits), Expect = 2.2e-43, Sum P(4) = 2.2e-43
Identities = 12/55 (21%), Positives = 30/55 (54%)
Query: 696 NNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNN 750
+N +++ +QA + PG +E+ ++ + N +++E S A + L+ ++N
Sbjct: 530 HNFRDM-QQAVINGPDKWPGAAAIENENGQIVNLRNKSQEERSSLANQLLAPTSN 583
Score = 41 (19.5 bits), Expect = 1.2e-65, Sum P(4) = 1.2e-65
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 683 TMETINDTISK-AKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR 734
T E D +S K N LIK+ DK P + + K + + +A+
Sbjct: 1151 TSEKFFDAMSSYVKENPDALIKEKDDKLRNSGPQSSSIVRLNRKAAEKVLSAK 1203
Score = 38 (18.4 bits), Expect = 1.9e-42, Sum P(4) = 1.9e-42
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 436 ERHLNDGDFVLFNRQPSLHKMSIMGHR 462
+++L D F+L N + L +++I R
Sbjct: 1078 QKYLKDFTFILHNIKSELAQLNISDPR 1104
>SGD|S000005868 [details] [associations]
symbol:RPA190 "RNA polymerase I largest subunit A190"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IMP;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IGI;IMP] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 SGD:S000005868 EMBL:BK006948 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:X95720 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790
eggNOG:COG0086 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
HOGENOM:HOG000205401 GeneTree:ENSGT00550000074861 OrthoDB:EOG432464
EMBL:J03530 EMBL:Z75249 PIR:S67250 RefSeq:NP_014986.3
RefSeq:NP_620389.3 ProteinModelPortal:P10964 SMR:P10964
DIP:DIP-999N IntAct:P10964 MINT:MINT-613626 STRING:P10964
PaxDb:P10964 PeptideAtlas:P10964 EnsemblFungi:YOR341W GeneID:854519
GeneID:854523 KEGG:sce:YOR341W KEGG:sce:YOR343W-B CYGD:YOR341w
NextBio:976888 Genevestigator:P10964 GermOnline:YOR341W
Uniprot:P10964
Length = 1664
Score = 465 (168.7 bits), Expect = 1.4e-113, Sum P(6) = 1.4e-113
Identities = 110/280 (39%), Positives = 159/280 (56%)
Query: 292 FAQLLQFHIATYFD-NELPGQPRATQR-SGR-PIKSICSRLKAKEGRIRGNLMGKRVDFS 348
F++L+ + D N +A R SG+ PI + L+ KEG R ++MGKRV+++
Sbjct: 420 FSRLMNAFVTIQNDVNAFIDSTKAQGRTSGKVPIPGVKQALEKKEGLFRKHMMGKRVNYA 479
Query: 349 ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
AR+VI+PDP I +++GVP A+ LTYPE VT YNI L++ V GP PG T I
Sbjct: 480 ARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAVINGPDKWPGAT---QI 536
Query: 409 IRDDGQRLDL-------------RYLKKSSDHHLE-LGYKVERHLNDGDFVLFNRQPSLH 454
+DG + L + L SS+ L KV RH+ + D VL NRQP+LH
Sbjct: 537 QNEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKVYRHIKNRDVVLMNRQPTLH 596
Query: 455 KMSIMGHRIKIMPYS-TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKC 513
K S+MGH+++++P T RL+ + T YNADFDGDEMNMH PQ+ RAE L L
Sbjct: 597 KASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDSQ 656
Query: 514 IVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
++P S PV G++QD + +T +D+F ++ + +
Sbjct: 657 YLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYI 696
Score = 392 (143.0 bits), Expect = 1.8e-74, Sum P(5) = 1.8e-74
Identities = 123/381 (32%), Positives = 182/381 (47%)
Query: 431 LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS-TFRLNLSVTSPYNADFDGDE 489
L KV RH+ + D VL NRQP+LHK S+MGH+++++P T RL+ + T YNADFDGDE
Sbjct: 573 LNKKVYRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDE 632
Query: 490 MNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVF 549
MNMH PQ+ RAE L L ++P S PV G++QD + +T +D+F ++ +
Sbjct: 633 MNMHFPQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQY 692
Query: 550 MNILMWW-EDFDGKVPQ-------PTILKPRPLWTGKQVFNLII----PKQ---INLF-R 593
+ DG + PTI KP PLWTGKQ+ ++ P INL +
Sbjct: 693 QQYIYGCIRPEDGHTTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGINLISK 752
Query: 594 TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
+ KG L + V + G LL G L K G S ++H + E GP+ A K
Sbjct: 753 NKIKNEYWGKGSL---ENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKV 809
Query: 654 LGHTQWLVNYWLLQNAFSIGIGDTIADAK-------TMETINDTISKAKNNVKNLIKQAQ 706
L L ++ AF+ G+ D A+ ++T DT +A V NL K
Sbjct: 810 LSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTP 869
Query: 707 DKSLEPEPGRTMMESF-ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF-I 764
+PE + + E +N + +L +A +S++ + S + V G+ F
Sbjct: 870 AD--DPELLKRLQEILRDNNKSGIL-----DAVTSSKVNAITSQVVSKCVPDGTMKKFPC 922
Query: 765 NISQMTACVGQQ--NVEGKRI 783
N Q A G + NV +I
Sbjct: 923 NSMQAMALSGAKGSNVNVSQI 943
Score = 345 (126.5 bits), Expect = 1.4e-113, Sum P(6) = 1.4e-113
Identities = 67/182 (36%), Positives = 109/182 (59%)
Query: 701 LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760
L+K+ Q+ + + +KVN + + + N+++AM +G+K
Sbjct: 875 LLKRLQEILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMALSGAK 934
Query: 761 GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 820
GS +N+SQ+ +GQQ +EG+R+P +TLP F + + G+V+ + G+ PQE
Sbjct: 935 GSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQE 994
Query: 821 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 880
++FH M GREGLIDTAVKTS +GY+QR L K +E + V YD ++R++ G ++QF+YG D
Sbjct: 995 YYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMYGGDA 1054
Query: 881 MD 882
+D
Sbjct: 1055 ID 1056
Score = 222 (83.2 bits), Expect = 1.4e-113, Sum P(6) = 1.4e-113
Identities = 40/71 (56%), Positives = 58/71 (81%)
Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
++ ++++SL+ PGE +G +A+QS+GEP+TQMTLNTFH+AG A NVTLG+PRLREI+ A
Sbjct: 1170 MQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTA 1229
Query: 1118 KK-IKTPSLSV 1127
IKTP +++
Sbjct: 1230 SAAIKTPQMTL 1240
Score = 189 (71.6 bits), Expect = 1.4e-113, Sum P(6) = 1.4e-113
Identities = 66/252 (26%), Positives = 122/252 (48%)
Query: 1173 EEDVEFVK-SYYEMPDEDI-APEKISPWLLRIELN-REMMVDKKLSMAAVAEKINQ-EFD 1228
EE ++ K S + DED+ E+I+ ++ N ++ D++ ++ + I + FD
Sbjct: 1404 EEGIDSDKESDSDSEDEDVDMNEQINKSIVEANNNMNKVQRDRQSAIISHHRFITKYNFD 1463
Query: 1229 DDLT--CIFNDDNA---DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMAL 1283
D+ C F + A +KL++ + I+ + K + D + E+ +
Sbjct: 1464 DESGKWCEFKLELAADTEKLLM-VNIVEEICRKSIIRQIPHIDRCVHPEPENGKRV-LVT 1521
Query: 1284 RGVNLLAVMCHED-VDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRH 1342
GVN A+ E +D TSN + +++ G+EA R +++E+ V S V++RH
Sbjct: 1522 EGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRH 1581
Query: 1343 LAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTEN 1402
L ++ D MT +G +A R G+ + T M+ S+E T L A + E + L +
Sbjct: 1582 LDLIADMMTRQGTYLAFNRQGMETS-TSSFMKMSYETTCQFLTKAVLDNEREQLDSPSAR 1640
Query: 1403 IMLGQLAPIGTG 1414
I++G+L +GTG
Sbjct: 1641 IVVGKLNNVGTG 1652
Score = 167 (63.8 bits), Expect = 1.4e-113, Sum P(6) = 1.4e-113
Identities = 41/118 (34%), Positives = 60/118 (50%)
Query: 13 AKVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTA 71
+++ V FGIL+ EIR +S QI + + G P GGL D LG R + C TC
Sbjct: 9 SEITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLRNL-CSTCGL 67
Query: 72 NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI-LADEDDHKFKQALKIR 128
+ CPGH GH+EL P ++ F + +R+ C C L + H++ A K+R
Sbjct: 68 DEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRY--ACKLR 123
Score = 47 (21.6 bits), Expect = 8.1e-39, Sum P(4) = 8.1e-39
Identities = 30/145 (20%), Positives = 61/145 (42%)
Query: 837 VKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG---MDSVWIESQTLDS 893
+K+ + Y+ + KA+ D G+ ++ D + L E + ++ + S
Sbjct: 181 LKSKRSEYVDMAIAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSRGKCDNCGMFS 240
Query: 894 LKMKKSEFDKAFRFEMDEENWNPN----YMLQEYIDDLKTIKELRDVFDAEVQKLEA-DR 948
K +K F K F ++E+ N ++ Q+ I K K+L +A E+ D
Sbjct: 241 PKFRKDGFTKIFETALNEKQITNNRVKGFIRQDMIKKQKQAKKLDGSNEASANDEESFDV 300
Query: 949 YQLATEIATSGDSSWPLPVNLKRLI 973
+ T +G S++ L +K ++
Sbjct: 301 GRNPTTRPKTG-STYILSTEVKNIL 324
Score = 45 (20.9 bits), Expect = 2.4e-49, Sum P(4) = 2.4e-49
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 1234 IFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG-----VNL 1288
I D+N ++ + A ++ + D +KK N + MAL G VN+
Sbjct: 882 ILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGT-MKKFPCNSMQAMALSGAKGSNVNV 940
Query: 1289 LAVMC 1293
+MC
Sbjct: 941 SQIMC 945
Score = 45 (20.9 bits), Expect = 1.3e-38, Sum P(4) = 1.3e-38
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 877 GEDGMDSVWIESQTLDSLKMKKSEF 901
GE S I S L+ LK K+SE+
Sbjct: 164 GEGSKQSKDISSTLLNELKSKRSEY 188
Score = 41 (19.5 bits), Expect = 2.0e-37, Sum P(5) = 2.0e-37
Identities = 11/55 (20%), Positives = 29/55 (52%)
Query: 697 NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNL 751
N+ L +QA + PG T +++ + + ++ + ++ + A + L+ S+N+
Sbjct: 515 NIAEL-RQAVINGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALANQLLTPSSNV 568
Score = 40 (19.1 bits), Expect = 1.4e-113, Sum P(6) = 1.4e-113
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 164 LKKNK-GGCGAQQPKLTIEGMKMIAEYKAQRKK---NDDQEQLPEPVERKQTLTAERVLG 219
L + K CG PK +G I E K+ N + + + + +KQ A+++ G
Sbjct: 228 LSRGKCDNCGMFSPKFRKDGFTKIFETALNEKQITNNRVKGFIRQDMIKKQK-QAKKLDG 286
Query: 220 VLKR-ISDEDCQLLGLNPKYARP 241
+ +DE+ +G NP RP
Sbjct: 287 SNEASANDEESFDVGRNPT-TRP 308
Score = 40 (19.1 bits), Expect = 5.8e-48, Sum P(5) = 5.8e-48
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 680 DAKTMETINDTISKAKNNVKNLIKQAQ 706
D E IN +I +A NN+ + + Q
Sbjct: 1421 DVDMNEQINKSIVEANNNMNKVQRDRQ 1447
Score = 39 (18.8 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 1252 DEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHE 1295
DE G LN DD ++ E M E + + ++ + + +E
Sbjct: 137 DEITLGSLNSSMYTDDEAIEDNEDEMDGEGSKQSKDISSTLLNE 180
Score = 38 (18.4 bits), Expect = 2.5e-63, Sum P(5) = 2.5e-63
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 597 WHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGH 656
W+ +D+ T ++ ++ E++ + +T GTS + G +AAR ++ H
Sbjct: 1243 WNDVSDEQADTFCKSISKVLLSEVIDKVIVTETTGTSNTA---------GGNAARSYVIH 1293
Query: 657 TQWLVN 662
++ N
Sbjct: 1294 MRFFDN 1299
>DICTYBASE|DDB_G0275759 [details] [associations]
symbol:rpa1 "RNA polymerase I, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0275759 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR EMBL:AAFI02000013 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 RefSeq:XP_643519.1 HSSP:P04050
ProteinModelPortal:Q86H36 STRING:Q86H36 PRIDE:Q86H36
EnsemblProtists:DDB0216292 GeneID:8620100 KEGG:ddi:DDB_G0275759
KO:K02999 OMA:CLLNETT ProtClustDB:CLSZ2497252
PANTHER:PTHR19376:SF11 Uniprot:Q86H36
Length = 1615
Score = 462 (167.7 bits), Expect = 4.7e-112, Sum P(5) = 4.7e-112
Identities = 131/380 (34%), Positives = 191/380 (50%)
Query: 574 LWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTS 633
L G+ NL P +I T W KG+ D+ V I + E+++G L K G S
Sbjct: 702 LTIGRAPLNLEAPSKIP---TKMW---GTKGLEITRDSHVIIRQNEMVAGILDKGHFGAS 755
Query: 634 TGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISK 693
+ L+H +E PD A L + +L F+ G+ D + K + +T+ K
Sbjct: 756 SYGLVHTCYELYDPDVAGSLLTLLGRMFTNYLQSRGFTCGVDDLLMKNKEEKFRVETLKK 815
Query: 694 AKNN-----VK--NLIK----QAQD---KSLEPEPGRTMMESFENK-VNQVLNTARDEAG 738
A K +L K +A+D K+L+ E ++ K +NQ + D
Sbjct: 816 ANEEGYTVAAKFADLSKYDEQKARDFFSKALQSEREVARLDGLLKKGLNQYTSKVIDTLI 875
Query: 739 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
Q+ NN M +G+KGS +N SQ++ +GQQ +EGKR+P +TLP F
Sbjct: 876 PGGQQKPFPKNNFSLMTVSGAKGSVVNFSQVSCLLGQQELEGKRVPRMVSGKTLPSFQAY 935
Query: 799 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
D + GFV + +L G+ PQ++FFH M GREGLIDTAVKTS +GY+QR L+K +E + V
Sbjct: 936 DASARAGGFVMDRFLTGVRPQDYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSV 995
Query: 859 KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE--ENWNP 916
+YD TVR S G VIQF YGED ++ T + + E K+ +F M++ E
Sbjct: 996 QYDNTVRESDGSVIQFNYGEDSLEIGKTPYLTKFPIIAENYELFKS-QFPMEQLIEQLK- 1053
Query: 917 NYMLQEYIDDLKTIKELRDV 936
N + EY +KT EL V
Sbjct: 1054 NQEVVEYNRSIKTQPELDPV 1073
Score = 448 (162.8 bits), Expect = 4.7e-112, Sum P(5) = 4.7e-112
Identities = 115/308 (37%), Positives = 169/308 (54%)
Query: 263 THQLAMIIRHNENLRRQ--ERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGR 320
+H M+ + N+ +R+ G +++ L Q H+ +DN T
Sbjct: 365 SHYKGMV-KSNKMIRQSIDAGEGKAKFLVNSVCDL-QMHVNNMYDNSKSNSN--TNEVAN 420
Query: 321 PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETV 380
IK I L+ KEG R ++MGKRV+++ARTVI+PD ++ +++GVP A LT+P+ V
Sbjct: 421 GIKQI---LEKKEGLFRKHMMGKRVNYAARTVISPDISLETNEMGVPQYFAKTLTFPQPV 477
Query: 381 TPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRY--------LKKS--SDH-HL 429
T +N +L + V GP PG A +I ++G ++L L K+ + H H
Sbjct: 478 TSFNYNQLAQAVINGPEQYPG---ANFIEDENGHLINLSKESQEKRIALSKTLLTSHPHA 534
Query: 430 ELGY--KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS--TFRLNLSVTSPYNADF 485
G KV RHL GD+VL NRQP+LHK IMGHR+K++ + T R++ S S YNADF
Sbjct: 535 PRGVNKKVYRHLLSGDYVLANRQPTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADF 594
Query: 486 DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
DGDEMN+H PQS AE+ E+ + P++ P+ G++QD +L +TKRDT
Sbjct: 595 DGDEMNIHFPQSLLASAEIREICANNYQYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFT 654
Query: 546 KDVFMNIL 553
K F IL
Sbjct: 655 KADFQAIL 662
Score = 405 (147.6 bits), Expect = 1.5e-62, Sum P(5) = 1.5e-62
Identities = 124/381 (32%), Positives = 183/381 (48%)
Query: 414 QRLDLRYLKKSSDHHLELGY--KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS-- 469
+R+ L +S H G KV RHL GD+VL NRQP+LHK IMGHR+K++ +
Sbjct: 519 KRIALSKTLLTSHPHAPRGVNKKVYRHLLSGDYVLANRQPTLHKPGIMGHRVKVLGKNEK 578
Query: 470 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
T R++ S S YNADFDGDEMN+H PQS AE+ E+ + P++ P+ G++QD
Sbjct: 579 TLRMHYSNCSTYNADFDGDEMNIHFPQSLLASAEIREICANNYQYLVPRNGAPLRGLIQD 638
Query: 530 TLLGCRKITKRDTFIEKDVFMNILM---WWEDFDGKV--PQPTILKPRPLWTGKQVFN-- 582
+L +TKRDT K F IL W + + P P ILKP PLW+GKQ+ +
Sbjct: 639 HILTGVLLTKRDTLFTKADFQAILYASCWSVNTKHPIVTPPPCILKPVPLWSGKQLISAA 698
Query: 583 ---LIIPKQ-INL-----FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTS 633
L I + +NL T W KG+ D+ V I + E+++G L K G S
Sbjct: 699 LNQLTIGRAPLNLEAPSKIPTKMW---GTKGLEITRDSHVIIRQNEMVAGILDKGHFGAS 755
Query: 634 TGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISK 693
+ L+H +E PD A L + +L F+ G+ D + K + +T+ K
Sbjct: 756 SYGLVHTCYELYDPDVAGSLLTLLGRMFTNYLQSRGFTCGVDDLLMKNKEEKFRVETLKK 815
Query: 694 AKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSE--SNNL 751
A + + D S E + + F + AR + +K L++ S +
Sbjct: 816 ANEEGYTVAAKFADLSKYDE--QKARDFFSKALQSEREVARLDG--LLKKGLNQYTSKVI 871
Query: 752 KAMVTAGSKGSFI--NISQMT 770
++ G + F N S MT
Sbjct: 872 DTLIPGGQQKPFPKNNFSLMT 892
Score = 210 (79.0 bits), Expect = 4.7e-112, Sum P(5) = 4.7e-112
Identities = 38/97 (39%), Positives = 60/97 (61%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTAN 72
++ V F + D++R++SV QI E+ + G P PGGL DP LG +C TC+ +
Sbjct: 12 EISSVSFQFYTSDDVRKLSVKQIVEIESFDMLGGPVPGGLHDPALGPTGPAERCATCSLD 71
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNC 109
ECPGHFGH+ELA P ++ +T+ ++++ CF+C
Sbjct: 72 FIECPGHFGHIELAIPCYNPVSFQTIFKLLKNKCFHC 108
Score = 209 (78.6 bits), Expect = 4.7e-112, Sum P(5) = 4.7e-112
Identities = 70/231 (30%), Positives = 112/231 (48%)
Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK-KI 1120
+ +S+V+PGE +G + AQSIGEP+TQMTLNTFH AG NVTLG+PRLRE+I A K
Sbjct: 1129 YSRSMVSPGESVGLLCAQSIGEPSTQMTLNTFHLAGRGEANVTLGIPRLRELIMTATTKP 1188
Query: 1121 KTPSLSVFLKPGVNS--TKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEF 1178
TP + + N T++ AK ++ ++ +T E + D + I ++EF
Sbjct: 1189 ITPLMEFQINDSTNKVETEKMAKYLEILKLSDIIKDIT-VQEYFQDTNRNYDI---EIEF 1244
Query: 1179 VKSYYEMPDEDIAPEKISPWLLRIELN----REMMVDKKLSM----AAVAEKIN-QEFDD 1229
+ + ++ EK L E N R++ KL + + K+ + +
Sbjct: 1245 IPTLQQVLSLHRIKEKQLNKLFG-EFNKVIKRQVKSQGKLKVNNGDIGLGSKVRGSDLVE 1303
Query: 1230 DLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTE 1280
D + NDD+A ND+ + N + KK +S ++T+
Sbjct: 1304 DDSLTINDDDAPA--------NDDTTNNDENTSQQQPSSQNKKSKSKVITQ 1346
Score = 201 (75.8 bits), Expect = 3.1e-110, Sum P(6) = 3.1e-110
Identities = 58/197 (29%), Positives = 96/197 (48%)
Query: 1226 EFDDD-LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR 1284
EFD LT + + K +L + I+ EA K L F+ + + T +++
Sbjct: 1415 EFDQKKLTFTISVASDSKKVLMLGIVETEASKFVLKSCKGITRCFVNEKQVGGKTHYSIQ 1474
Query: 1285 --GVNLLAVM-CHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYR 1341
GVNL + + + +N + I++ G+EA R+A+ E+ V + G V+ R
Sbjct: 1475 SEGVNLSEIFELRDKLKIDEIYTNDIYAILQKYGVEACRQAVTSEISNVFAAYGISVDKR 1534
Query: 1342 HLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTE 1401
HL +L D MT+ G A+ R GI N+T P + SFE T L A++ + D + +
Sbjct: 1535 HLILLGDYMTFEGGYRALNRIGIE-NNTSPFQKMSFETTFSFLSKASLMGDYDTVTSPSS 1593
Query: 1402 NIMLGQLAPIGTGDCSL 1418
I+LGQ+ GTG ++
Sbjct: 1594 RIVLGQIVKNGTGSFTI 1610
Score = 43 (20.2 bits), Expect = 1.6e-51, Sum P(4) = 1.6e-51
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 868 LGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF 907
LGD + F G ++ + IE+ T KM F+ F F
Sbjct: 1539 LGDYMTFEGGYRALNRIGIENNTSPFQKMS---FETTFSF 1575
Score = 41 (19.5 bits), Expect = 2.9e-67, Sum P(5) = 2.9e-67
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 1155 VTEATEVWYDPDPMGTIIE-----EDVEFVKSYYEMPDEDIAPEKISP 1197
+ E E++ PM +IE E VE+ +S P+ D K +P
Sbjct: 1032 IAENYELFKSQFPMEQLIEQLKNQEVVEYNRSIKTQPELDPVMSKFNP 1079
Score = 40 (19.1 bits), Expect = 4.7e-26, Sum P(3) = 4.7e-26
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 161 EEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT 211
++P +NK ++ +T + + A+ K ++K+N + E E E K +
Sbjct: 1330 QQPSSQNKK---SKSKVITQDDDSVAAKSKNKKKQNVNYEDGEEEAEEKDS 1377
Score = 37 (18.1 bits), Expect = 4.7e-112, Sum P(5) = 4.7e-112
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 169 GGCGAQQPKL 178
G CGA P+L
Sbjct: 228 GNCGAYSPRL 237
Score = 37 (18.1 bits), Expect = 3.1e-110, Sum P(6) = 3.1e-110
Identities = 21/123 (17%), Positives = 53/123 (43%)
Query: 955 IATSGDSSWPLPV-NLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
+A G+++ L + L+ LI A T + P ++ +K+ + L+++ D
Sbjct: 1162 LAGRGEANVTLGIPRLRELIMTAT-TKPITPLMEFQINDSTNKVETEKMAKYLEILKLSD 1220
Query: 1014 PLS-VEAQK---NATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1069
+ + Q+ + ++I + ++VL HR+ + + GE + + +
Sbjct: 1221 IIKDITVQEYFQDTNRNYDIEIEFIPTLQQVLSLHRIKEKQLNKLFGEFNKVIKRQVKSQ 1280
Query: 1070 GEM 1072
G++
Sbjct: 1281 GKL 1283
Score = 37 (18.1 bits), Expect = 5.6e-09, Sum P(3) = 5.6e-09
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 1471 LRLSPVTDAQFSP--YVGG 1487
+R+ PVT A++ P +V G
Sbjct: 338 MRVFPVTPARYRPPNFVNG 356
>TAIR|locus:2076661 [details] [associations]
symbol:NRPA1 "nuclear RNA polymerase A1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0006406
"mRNA export from nucleus" evidence=RCA] [GO:0006606 "protein
import into nucleus" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0009506 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
EMBL:AL049660 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 HSSP:P04050 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 IPI:IPI00546513
PIR:T06754 RefSeq:NP_191325.1 UniGene:At.50286
ProteinModelPortal:Q9SVY0 SMR:Q9SVY0 IntAct:Q9SVY0 STRING:Q9SVY0
PaxDb:Q9SVY0 PRIDE:Q9SVY0 EnsemblPlants:AT3G57660.1 GeneID:824935
KEGG:ath:AT3G57660 TAIR:At3g57660 InParanoid:Q9SVY0
PhylomeDB:Q9SVY0 ProtClustDB:CLSN2684581 Genevestigator:Q9SVY0
Uniprot:Q9SVY0
Length = 1670
Score = 370 (135.3 bits), Expect = 2.1e-106, Sum P(7) = 2.1e-106
Identities = 74/175 (42%), Positives = 112/175 (64%)
Query: 713 EPGRTMMESFENKVNQVLN--TARDEAGSSAQKSLSES---NNLKAMVTAGSKGSFINIS 767
E G + + S + + LN +++ L ++ N + M +G+KGS +N
Sbjct: 895 EDGESALASLDRSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQ 954
Query: 768 QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
Q+++ +GQQ++EGKR+P +TLP F D+ P + GF+ + +L GL PQE++FH M
Sbjct: 955 QISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMA 1014
Query: 828 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
GREGL+DTAVKTS +GY+QR L+K +E + V YD TVR++ G +IQF YGEDG+D
Sbjct: 1015 GREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVD 1069
Score = 305 (112.4 bits), Expect = 2.1e-106, Sum P(7) = 2.1e-106
Identities = 72/177 (40%), Positives = 98/177 (55%)
Query: 306 NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
N L AT +S R IC L+ KEG R +MGKRV+ + R+VI+PDP I ++ +G
Sbjct: 407 NVLFDSKTATVQSQRDSSGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIG 466
Query: 366 VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTG-------AKYIIRDDGQRLDL 418
+P AL LTYPE VTP+N+E+L+E + GP PG T K + +R
Sbjct: 467 IPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTEKARRAIA 526
Query: 419 RYLKKSSDHHLELGYK---------VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
R L S ELG V RH+ DGD VL NRQP+LHK S+M H+++++
Sbjct: 527 RKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVL 583
Score = 293 (108.2 bits), Expect = 3.7e-105, Sum P(7) = 3.7e-105
Identities = 58/134 (43%), Positives = 84/134 (62%)
Query: 421 LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTS 479
L K+ D + E G V RH+ DGD VL NRQP+LHK S+M H+++++ T RL+ + S
Sbjct: 539 LGKTCDINFE-GKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCS 597
Query: 480 PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 539
YNADFDGDEMN+H PQ +RAE ++ P + P+ ++QD ++ +TK
Sbjct: 598 TYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTK 657
Query: 540 RDTFIEKDVFMNIL 553
RDTF++KD F +L
Sbjct: 658 RDTFLDKDHFNQLL 671
Score = 237 (88.5 bits), Expect = 2.1e-106, Sum P(7) = 2.1e-106
Identities = 64/164 (39%), Positives = 90/164 (54%)
Query: 1015 LSVEAQKNATLFFNIL-LRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
L + +K A F + + ASK V +E L ++S+F SL PGE +
Sbjct: 1108 LPISLKKGAEKFVEAMPMNERIASKFVRQEELLKL---------VKSKFFASLAQPGEPV 1158
Query: 1074 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII-NVAKKIKTPSLSVFLKPG 1132
G +AAQS+GEP+TQMTLNTFH AG NVTLG+PRL+EI+ A IKTP ++ L G
Sbjct: 1159 GVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLLKG 1218
Query: 1133 VNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDV 1176
TKE A ++ L T+ + ++ E+ P T+ E +V
Sbjct: 1219 --KTKEDANDITDRLRKITVADIIKSMELSVVPY---TVYENEV 1257
Score = 235 (87.8 bits), Expect = 3.4e-106, Sum P(7) = 3.4e-106
Identities = 69/217 (31%), Positives = 110/217 (50%)
Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII-NV 1116
++S+F SL PGE +G +AAQS+GEP+TQMTLNTFH AG NVTLG+PRL+EI+
Sbjct: 1143 VKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTA 1202
Query: 1117 AKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDP-----DPMGTI 1171
A IKTP ++ L G TKE A ++ L T+ + ++ E+ P + + +I
Sbjct: 1203 AANIKTPIMTCPLLKG--KTKEDANDITDRLRKITVADIIKSMELSVVPYTVYENEVCSI 1260
Query: 1172 IEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNR-EMMVDKKLSMAAVAEKINQEFDDD 1230
+ + K + DI E + + L + E ++ + M I+ +D
Sbjct: 1261 HKLKINLYKPEHYPKHTDITEEDWEETMRAVFLRKLEDAIETHMKMLHRIRGIH----ND 1316
Query: 1231 LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDD 1267
+T + D ND++ G+ N++ +DD
Sbjct: 1317 VTGPIAGNETD---------NDDSVSGKQNEDDGDDD 1344
Score = 180 (68.4 bits), Expect = 2.1e-106, Sum P(7) = 2.1e-106
Identities = 45/151 (29%), Positives = 74/151 (49%)
Query: 5 FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRK 63
FP ++V V V+F ++ ++R+ S +++ + G P PGGL D +LG D K
Sbjct: 19 FPMGASQV--VESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKDDK 76
Query: 64 MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILAD-EDDHKFK 122
C +C CPGH GH+EL P++H + + ++ CF C +A ED +
Sbjct: 77 QACNSCGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVERAV 136
Query: 123 QALKIRNPKNRLK-KILDACKNKTKCEGGDE 152
LK+ + + K L++ TK + DE
Sbjct: 137 SQLKLIIKGDIVSAKQLES-NTPTKSKSSDE 166
Score = 176 (67.0 bits), Expect = 2.1e-106, Sum P(7) = 2.1e-106
Identities = 49/177 (27%), Positives = 83/177 (46%)
Query: 1239 NADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHED-V 1297
N+ K I R + N P+ + ++ ++ + E + GV+ A+ +D +
Sbjct: 1485 NSGK-IERCTVANCGDPQVIYHGDNPKERREISNDEKKASPALHASGVDFPALWEFQDKL 1543
Query: 1298 DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLM 1357
D R SN + +++ + G+EA R ++ E+ V G V+ RHL ++ D MT+ G
Sbjct: 1544 DVRYLYSNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYR 1603
Query: 1358 AITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
++R G T P R +FE ++ AA + E D L + I LG A GTG
Sbjct: 1604 PMSRMGGIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTG 1660
Score = 75 (31.5 bits), Expect = 2.1e-106, Sum P(7) = 2.1e-106
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 566 PTILKPRPLWTGKQVFNLII 585
P ILKP PLWTGKQV ++
Sbjct: 706 PAILKPVPLWTGKQVITAVL 725
Score = 68 (29.0 bits), Expect = 2.1e-106, Sum P(7) = 2.1e-106
Identities = 24/112 (21%), Positives = 47/112 (41%)
Query: 613 VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSI 672
+ I K E + G + K L+H + E G +AA L L +L + F+
Sbjct: 781 LHIRKNEFVCGVIDKAQFADY--GLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTC 838
Query: 673 GIGDTIADAKTMETINDTISKAKNNVKNLIKQA----QDKSLEPEPGRTMME 720
G+ D I E + + +N + ++++ D ++P+ R+ +E
Sbjct: 839 GVDDLIILKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQDMRSRIE 890
Score = 43 (20.2 bits), Expect = 2.4e-86, Sum P(7) = 2.4e-86
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 877 GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD-EEN 913
G+D + ++ D+ K KK E D EMD EEN
Sbjct: 1341 GDDDGEGTEVDDLGSDAQKQKKQETD-----EMDYEEN 1373
Score = 42 (19.8 bits), Expect = 1.8e-20, Sum P(3) = 1.8e-20
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 1192 PEKISPWLLRIELNREMMVD 1211
PE+++PW +E RE +++
Sbjct: 478 PERVTPW--NVEKLREAIIN 495
Score = 41 (19.5 bits), Expect = 2.0e-92, Sum P(7) = 2.0e-92
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 1245 LRIRIMNDEA-PKG-ELNDESAEDD---VFLKKIESNMLTEMAL 1283
L+I + E PK ++ +E E+ VFL+K+E + T M +
Sbjct: 1263 LKINLYKPEHYPKHTDITEEDWEETMRAVFLRKLEDAIETHMKM 1306
Score = 40 (19.1 bits), Expect = 2.1e-69, Sum P(6) = 2.1e-69
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 881 MDSVWIESQTLDSLKMKKSEF 901
+D W ++ D L ++K+EF
Sbjct: 768 IDESWKQNLNEDKLHIRKNEF 788
Score = 40 (19.1 bits), Expect = 3.0e-20, Sum P(3) = 3.0e-20
Identities = 11/46 (23%), Positives = 26/46 (56%)
Query: 151 DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEY-KAQRKK 195
++ +V +D EP +++ +P+ ++G+K + E K +R+K
Sbjct: 1397 EDTEVSKEDTPEPQEES------MEPQKEVKGVKNVKEQSKKKRRK 1436
Score = 38 (18.4 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 415 RLDLRYLKKSSDHHL 429
+LD+RYL +S H +
Sbjct: 1542 KLDVRYLYSNSIHDM 1556
>CGD|CAL0001661 [details] [associations]
symbol:RPA190 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 CGD:CAL0001661
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AACQ01000244
EMBL:AACQ01000240 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 RefSeq:XP_710723.1 RefSeq:XP_710761.1
ProteinModelPortal:Q59LW3 STRING:Q59LW3 GeneID:3647643
GeneID:3647677 KEGG:cal:CaO19.1839 KEGG:cal:CaO19.9397
Uniprot:Q59LW3
Length = 1665
Score = 453 (164.5 bits), Expect = 2.3e-106, Sum P(4) = 2.3e-106
Identities = 110/307 (35%), Positives = 172/307 (56%)
Query: 267 AMIIRH-NE---NLRRQERNGAPAHIISEFAQLLQFHIATYFD-NE-LPGQPRATQRSGR 320
+++IR NE N+ +++ +G II F +L+ + D N + +G+
Sbjct: 377 SVLIRDLNERITNMYKEKISGEDKKII--FNRLMNAFVTLQNDVNAFIDSTKNQNAPAGK 434
Query: 321 -PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
P I L+ KEG R ++MGKRV+++AR+VI+PDP + +++GVP A LTYPE
Sbjct: 435 IPNPGIKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNLETNEIGVPPVFAKKLTYPEP 494
Query: 380 VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYL----KKSSDHHL------ 429
VT YN L++ V GP PG A + +DG + L + +K+ + L
Sbjct: 495 VTSYNASELRQAVINGPDTWPG---AIQVQNEDGSLISLIGMTLEQRKAIANQLLTPNGG 551
Query: 430 --ELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFD 486
+G KV RH+ + D V+ NRQP+LHK S+MGH+++++P T RL+ + T YNADFD
Sbjct: 552 NSVVGKKVYRHIKNNDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFD 611
Query: 487 GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
GDEMNMH PQ+ RAE L L ++P S P+ G++QD + +T +DTF +
Sbjct: 612 GDEMNMHFPQNENARAEALNLANTDNQYLTPTSGSPLRGLIQDHISAGVWLTNKDTFFNR 671
Query: 547 DVFMNIL 553
+ + ++
Sbjct: 672 ETYQQLI 678
Score = 395 (144.1 bits), Expect = 5.1e-100, Sum P(4) = 5.1e-100
Identities = 93/262 (35%), Positives = 136/262 (51%)
Query: 431 LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFDGDE 489
+G KV RH+ + D V+ NRQP+LHK S+MGH+++++P T RL+ + T YNADFDGDE
Sbjct: 555 VGKKVYRHIKNNDVVIMNRQPTLHKASMMGHKVRVLPGEKTLRLHYANTGAYNADFDGDE 614
Query: 490 MNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVF 549
MNMH PQ+ RAE L L ++P S P+ G++QD + +T +DTF ++ +
Sbjct: 615 MNMHFPQNENARAEALNLANTDNQYLTPTSGSPLRGLIQDHISAGVWLTNKDTFFNRETY 674
Query: 550 MNILMWW-EDFDGKVPQ-------PTILKPRPLWTGKQVFNLII----PKQI---NLFRT 594
++ DG + P I KP LWTGKQV ++ P + NL
Sbjct: 675 QQLIYGCIRPEDGHTSKNRIVTVPPAIYKPEMLWTGKQVITTVLLNIKPDNVPGVNLISK 734
Query: 595 AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
+D T + + + GELLSG L K G S ++H + E GP A K L
Sbjct: 735 NKIKSDYWSESSTENEVIFK--NGELLSGILDKSQYGASQFGIVHSLHEVYGPTVAGKAL 792
Query: 655 GHTQWLVNYWLLQNAFSIGIGD 676
L +++ AF+ G+ D
Sbjct: 793 SVLGRLFTNYIMMTAFTCGMDD 814
Score = 372 (136.0 bits), Expect = 2.3e-106, Sum P(4) = 2.3e-106
Identities = 87/270 (32%), Positives = 150/270 (55%)
Query: 671 SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF-ENKVNQV 729
S+ IG +A + DT KNN K L+++ ++ L + ++++ ++KVN +
Sbjct: 832 SVDIG-RVAATEVTNLDEDT----KNNNKELLRRLEE-ILRDDNKLGILDALTQSKVNAI 885
Query: 730 LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
+ + N+++AM +G+KGS +N+SQ+ +GQQ +EG+R+P
Sbjct: 886 TSQVVSKCVPDGTMKRFPYNSMQAMALSGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSG 945
Query: 790 RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 849
+TLP F + + G+++ + G+ PQE++FH M GREGLIDTAVKTS +GY+QR L
Sbjct: 946 KTLPSFKPFETDARAGGYIKQRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCL 1005
Query: 850 VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF-RFE 908
K +E + V YD +VR++ G +IQFLYG D +D+ + ++ K +D ++
Sbjct: 1006 TKQLEGVHVSYDNSVRDADGTLIQFLYGGDAVDTT--KQSHMNQFKFCVDNYDALLTKYN 1063
Query: 909 MDE--ENWNPNYMLQEYIDDLKTIKELRDV 936
+ EN + + L K++K+ +DV
Sbjct: 1064 PGDMTENIDTDLALSYSKKVRKSLKKQKDV 1093
Score = 242 (90.2 bits), Expect = 2.3e-106, Sum P(4) = 2.3e-106
Identities = 68/190 (35%), Positives = 104/190 (54%)
Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEH-RLTREAFEWVIGEIESRFLQSLVAPG 1070
++ L KN T+F SK K ++T + F ++ + ++++SL+ PG
Sbjct: 1123 QEKLDTYVSKNPTIFAQ--------SKEEAKSTGKITEKKFRALM---QLKYMRSLINPG 1171
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK-KIKTPSLSVFL 1129
E +G +A+QSIGEP+TQMTLNTFH+AG A NVTLG+PR+REII A IKTP +++ +
Sbjct: 1172 EAVGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRMREIIMTASASIKTPQMTLPI 1231
Query: 1130 KPGVNSTKERA--KNVQCAL--EYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
VN + A K+V + E+ VTE T D + + + K YE
Sbjct: 1232 LADVNDEQADAFCKSVARVVMSEFVDKVVVTETTSQDVDGSNSRSYVIGLKFYTKEEYET 1291
Query: 1186 PDEDIAPEKI 1195
+ DI+ E++
Sbjct: 1292 -EYDISQEQL 1300
Score = 208 (78.3 bits), Expect = 8.3e-103, Sum P(4) = 8.3e-103
Identities = 69/280 (24%), Positives = 128/280 (45%)
Query: 1148 EYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNRE 1207
E T++ E ++ D D + + D + E D D+ +K S + EL+R
Sbjct: 1388 EIETMKKAEETSDEEMDGDNSSSSDDSDSD--SDNEEDADADVDMDKPS----KSELSRS 1441
Query: 1208 MMVDKKLSMAAVAEKINQ-EFDDDLT--CIFN---DDNADKLILRIRIMNDEAPKGELND 1261
D++ + A + Q FDD+L C F + N + +L + I+ D K + +
Sbjct: 1442 AK-DRQSEVIASHNMVTQFNFDDELGEWCEFKLELNGNETQKLLMVNIVEDLLRKVVVRE 1500
Query: 1262 ESAEDDVFLKKIESNMLTE-MALRGVNLLAVMCHED-VDARRTTSNHLIEIIEVLGIEAV 1319
+ ++ + GVN A+ +D ++ TSN + +++ G+EA
Sbjct: 1501 IPHIGRCIRPEPDAKTGKRILTTEGVNFRAMWDQDDFINVNGITSNDVYAVLKTYGVEAA 1560
Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
R +++E+ V G V+ RHL ++ D MT G +A R GI+ + T M+ S+E
Sbjct: 1561 RNTIVNEIYRVFDTYGISVSSRHLDLIADMMTREGTYLAFNRQGID-SSTSAFMKMSYET 1619
Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLY 1419
T L A + + + L + I++G+L+ +GTG ++
Sbjct: 1620 TCQFLTKAVLDGDREELESPSAKIVMGKLSNVGTGSFDVF 1659
Score = 197 (74.4 bits), Expect = 2.3e-106, Sum P(4) = 2.3e-106
Identities = 50/153 (32%), Positives = 79/153 (51%)
Query: 13 AKVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTA 71
+++ V FG+LS +EIR++S QI + + G P GGL D LG R + C TC
Sbjct: 9 SEITSVDFGVLSDEEIRKLSAKQITNPIVFDNLGHPINGGLYDLSLGAFLRNV-CTTCGL 67
Query: 72 NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE-DDHKFKQALKIRNP 130
+ CPGH GH+EL P+++ F + +RS C C K ++ + H F+ L +
Sbjct: 68 DEKFCPGHLGHIELPVPVYNPMFFNQLYIFLRSACLYCHKFKLNQLEVHNFECKLHLIQY 127
Query: 131 KNRLKKI-LDACKNKTKCEGGDEIDVPGQDGEE 162
L+ + LD K+ + IDV G+D ++
Sbjct: 128 GLLLECVELDNIMAKSS-KSSSVIDVDGEDNDD 159
Score = 43 (20.2 bits), Expect = 2.0e-68, Sum P(4) = 2.0e-68
Identities = 13/61 (21%), Positives = 26/61 (42%)
Query: 676 DTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARD 735
+ + D T + ++ + VK K ++ G+T ME+ K+ ++ N D
Sbjct: 1298 EQLEDVITSKFLHALEGQIVKEVKKQKKPDYMPTVGKSAGKTDMETVSGKIKEIDNDDDD 1357
Query: 736 E 736
E
Sbjct: 1358 E 1358
Score = 41 (19.5 bits), Expect = 1.0e-51, Sum P(3) = 1.0e-51
Identities = 14/72 (19%), Positives = 32/72 (44%)
Query: 676 DTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME--SFENKVNQVLNTA 733
D+ +D+ E + + K + L + A+D+ E M+ +F++++ +
Sbjct: 1413 DSDSDSDNEEDADADVDMDKPSKSELSRSAKDRQSEVIASHNMVTQFNFDDELGEWCEFK 1472
Query: 734 RDEAGSSAQKSL 745
+ G+ QK L
Sbjct: 1473 LELNGNETQKLL 1484
Score = 41 (19.5 bits), Expect = 8.3e-25, Sum P(4) = 8.3e-25
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 507 LMMVPKCIVSPQSNRPVMGIVQDTLLG--CRKITK--RDTFIEKDVFMNILMWWEDFDG 561
+M I +PQ P++ V D C+ + + F++K V +D DG
Sbjct: 1215 IMTASASIKTPQMTLPILADVNDEQADAFCKSVARVVMSEFVDKVVVTETTS--QDVDG 1271
Score = 39 (18.8 bits), Expect = 5.3e-68, Sum P(4) = 5.3e-68
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 716 RTMMESFENKVNQVLNTARDEAGSSAQ 742
R +M F +KV T++D GS+++
Sbjct: 1249 RVVMSEFVDKVVVTETTSQDVDGSNSR 1275
>POMBASE|SPBC4C3.05c [details] [associations]
symbol:nuc1 "DNA-directed RNA polymerase I complex large
subunit Nuc1" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IGI] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0007000 "nucleolus organization" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 PomBase:SPBC4C3.05c
GO:GO:0005829 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0034503 GO:GO:0006360
GO:GO:0007000 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999
OMA:CLLNETT PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 EMBL:X14783
EMBL:M37411 PIR:JS0080 RefSeq:NP_596300.1 ProteinModelPortal:P15398
STRING:P15398 EnsemblFungi:SPBC4C3.05c.1 GeneID:2540873
KEGG:spo:SPBC4C3.05c OrthoDB:EOG432464 NextBio:20801989
Uniprot:P15398
Length = 1689
Score = 409 (149.0 bits), Expect = 1.4e-98, Sum P(6) = 1.4e-98
Identities = 96/302 (31%), Positives = 165/302 (54%)
Query: 597 WHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGH 656
W D+++G + D GELL G L K + G S L+H + E GPD A + L
Sbjct: 775 WSPDSEEGSVLFDD-------GELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSV 827
Query: 657 TQWLVNYWLLQNAFSIGI--------GDT-----IADAKT--METINDTISKAKNNVKNL 701
L + F+ + GD + + K+ +E ++ + + ++ L
Sbjct: 828 LSRLFTAYAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGLSTDSPIAL 887
Query: 702 IK-QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760
+ ++ + E + + + + K+N + ++ ++ + N+++ M +G+K
Sbjct: 888 LNANLEEVYRDDEKLQGLDAAMKGKMNGLTSSIINKCIPDGLLTKFPYNHMQTMTVSGAK 947
Query: 761 GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 820
GS +N+SQ++ +GQQ +EG+R+P ++LP F + +S GF+ + +L G+ PQE
Sbjct: 948 GSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQE 1007
Query: 821 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 880
++FH M GREGLIDTAVKTS +GY+QR L+K +E + V+YD TVR+S G ++QF YGED
Sbjct: 1008 YYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIVQFHYGEDS 1067
Query: 881 MD 882
+D
Sbjct: 1068 LD 1069
Score = 333 (122.3 bits), Expect = 3.4e-90, Sum P(6) = 3.4e-90
Identities = 88/262 (33%), Positives = 128/262 (48%)
Query: 434 KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNM 492
KV RH+ +GD ++ NRQP+LHK S+M H+ +I+P T R++ + + YNADFDGDEMNM
Sbjct: 592 KVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNM 651
Query: 493 HVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNI 552
H PQS R+E + + P S P+ G++QD ++ +T +DTF +D + +
Sbjct: 652 HFPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQL 711
Query: 553 LMWW--EDFDG-----KVPQPTILKPRPLWTGKQVFNLII----PKQ---INLFRTAAWH 598
L D G K P I +P WTGKQ+ + ++ P +NL A
Sbjct: 712 LFQALKPDETGMYGRIKTLPPAIQRPGIYWTGKQIISSVLLNLKPSDRPGLNLKSKAKVP 771
Query: 599 ADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQ 658
G L + GELL G L K + G S L+H + E GPD A + L
Sbjct: 772 GKYWSPDSEEGSVL--FDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLS 829
Query: 659 WLVNYWLLQNAFSIGIGDTIAD 680
L + F+ + D D
Sbjct: 830 RLFTAYAQMRGFTCRMDDLRLD 851
Score = 246 (91.7 bits), Expect = 1.4e-98, Sum P(6) = 1.4e-98
Identities = 49/84 (58%), Positives = 65/84 (77%)
Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
++ R+ QSLV PGE +G +A+QSIGEP+TQMTLNTFH+AG AKNVTLG+PRLREII A
Sbjct: 1179 MQLRYQQSLVDPGESVGVLASQSIGEPSTQMTLNTFHFAGFGAKNVTLGIPRLREIIMTA 1238
Query: 1118 K-KIKTPSLSVFLKPGVNSTKERA 1140
I+TP++++ L GV+ + A
Sbjct: 1239 SANIQTPTMTLRLNDGVSDKRASA 1262
Score = 221 (82.9 bits), Expect = 1.4e-98, Sum P(6) = 1.4e-98
Identities = 62/176 (35%), Positives = 91/176 (51%)
Query: 244 MILQVLXXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
++ ++L S D T ++ E L R+ R A +I+ F QL Q + +
Sbjct: 390 LLTRILQSSIQIASLSKDSTVEVNP--DEKEGLERRSR--AFELLINAFVQL-QHDVNSL 444
Query: 304 FDNELPGQPRATQRSGRP-IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
D+ R+ P IK I L+ KEG R ++MGKRV+++AR+VI+PDP I +
Sbjct: 445 IDSNRNPSSGGQSRTVPPGIKQI---LEKKEGLFRKHMMGKRVNYAARSVISPDPNIETN 501
Query: 363 QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDL 418
++GVP A LTYPE VT YN ++ V GPH PG A +I +DG + L
Sbjct: 502 EIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPG---ASHIQNEDGTLISL 554
Score = 198 (74.8 bits), Expect = 1.4e-98, Sum P(6) = 1.4e-98
Identities = 50/184 (27%), Positives = 93/184 (50%)
Query: 1239 NADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLT--EMALRGVNLLAVM-CHE 1295
N +KL++ + ++ + +++ F K +S + T ++ GVNL A+ +
Sbjct: 1499 NTEKLLM-VSLVEKACSETVIHEIPGITRCFSKPPDSALDTVPKVITEGVNLKAIWEFYN 1557
Query: 1296 DVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1355
++ +N + I+ + G+EA R A++ E+ V G V+ RHL+++ D MT+ G
Sbjct: 1558 EISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGG 1617
Query: 1356 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGD 1415
A R GI N T P + SFE T L +AA+ + D L + +++G++ GTG
Sbjct: 1618 YKAFNRMGIEYN-TSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGS 1676
Query: 1416 CSLY 1419
++
Sbjct: 1677 FDIF 1680
Score = 173 (66.0 bits), Expect = 1.4e-98, Sum P(6) = 1.4e-98
Identities = 39/117 (33%), Positives = 60/117 (51%)
Query: 13 AKVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTA 71
++++ V+FGI D++ ++SV QI + + P GGL D LG + C TC
Sbjct: 9 SEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLKNSVCATCHL 68
Query: 72 NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI-LADEDDHKFKQALKI 127
+ CPGHFGH+ L P +H F + +++RS C C L+ H F LK+
Sbjct: 69 DERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRLKL 125
Score = 48 (22.0 bits), Expect = 2.8e-70, Sum P(5) = 2.8e-70
Identities = 22/99 (22%), Positives = 43/99 (43%)
Query: 674 IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE-P-EPGRTMMESFE--NKVNQV 729
I + + + E + D + A N K + + Q S E P E + + + NKV V
Sbjct: 1368 IDEAPIEGRAQEALEDEDNDATNE-KMVSRSKQHASYEGPDEADKVALRQLKGSNKVEDV 1426
Query: 730 LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
++ G + +S+S+ K + K + ++IS+
Sbjct: 1427 NMDEEEDEGFKSDESVSDFKERKLL----EKQNTVSISE 1461
Score = 41 (19.5 bits), Expect = 1.4e-98, Sum P(6) = 1.4e-98
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 1011 GEDPLSVEAQKNATLF 1026
GED L V QK+ T F
Sbjct: 1064 GEDSLDVTKQKHLTQF 1079
>UNIPROTKB|F1LQN7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF05000 SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 PANTHER:PTHR19376:SF11 IPI:IPI00389616
Ensembl:ENSRNOT00000013417 ArrayExpress:F1LQN7 Uniprot:F1LQN7
Length = 1011
Score = 481 (174.4 bits), Expect = 1.9e-63, Sum P(4) = 1.9e-63
Identities = 118/308 (38%), Positives = 173/308 (56%)
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQ H+ FD+++ + + G I+ I L+ KEG R ++MGKRVD++AR+VI P
Sbjct: 422 LQSHVNIVFDSDMD-KLMLEKYPG--IRQI---LEKKEGLFRKHMMGKRVDYAARSVICP 475
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
D IN +++G+P A LTYP+ VTP+N++ L++ V GP+ PG A +I +DG R
Sbjct: 476 DMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG---ASMVINEDGSR 532
Query: 416 LDL-------------RYLKKSSDHHLELGYKVE-RHLNDGDFVLFNRQPSLHKMSIMGH 461
L + L S+ G KV RH+ +GD +L NRQP+LH+ SI H
Sbjct: 533 TALSAVDATQREAVAKQLLTPSTGIPKPQGAKVVCRHVKNGDILLLNRQPTLHRPSIQAH 592
Query: 462 RIKIMPYS-TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
R I+P RL+ + YNADFDGDEMN H PQS RAE L + + P+
Sbjct: 593 RAHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDG 652
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM-WWEDFDGKVP--QPTILKPRPLWTG 577
+P+ G++QD ++ +T R F ++ +M ++ D G+V P ILKP PLWTG
Sbjct: 653 QPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTG 712
Query: 578 KQVFNLII 585
KQV + ++
Sbjct: 713 KQVVSTLL 720
Score = 139 (54.0 bits), Expect = 1.9e-63, Sum P(4) = 1.9e-63
Identities = 31/97 (31%), Positives = 49/97 (50%)
Query: 722 FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
F+ +VN N NNL+ MV +G+KGS +N Q++ +GQ +EG+
Sbjct: 893 FKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGR 952
Query: 782 RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTP 818
R P ++LP F ++ P + GFV +L G+ P
Sbjct: 953 RPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRP 989
Score = 133 (51.9 bits), Expect = 1.9e-63, Sum P(4) = 1.9e-63
Identities = 45/172 (26%), Positives = 72/172 (41%)
Query: 28 IRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELA 86
IR++SV I + + G P GL D LG D K C TC + C GH GH++L
Sbjct: 46 IRKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSKEVCSTCVQDFNNCSGHLGHIDLP 105
Query: 87 KPMFH-IGFMKTVLSIMRSVCFNCSKILADEDD-HKFKQALKIRN-----PKNRLKKILD 139
+++ + F K L ++R C NC + H LK+ + L++IL
Sbjct: 106 LTVYNPLLFDKLYL-LLRGSCLNCHMLTCPRAAIHLLVCQLKVLDVGALQAVYELERILS 164
Query: 140 ACKNKTKCEGGDEIDVPGQDGEEPLKKNK--GGCGAQQPKLTIEGMKMIAEY 189
+T EI ++ + +N G GA + K++A +
Sbjct: 165 RFLEETSDPSAFEIQEELEEYTSKILQNNLLGSQGAHVKNVCESRSKLVAHF 216
Score = 82 (33.9 bits), Expect = 1.9e-63, Sum P(4) = 1.9e-63
Identities = 28/112 (25%), Positives = 49/112 (43%)
Query: 610 DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL-LQN 668
++ V I +GELL G L K G+S L+H +E G + + + L L +L L
Sbjct: 762 ESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYR 821
Query: 669 AFSIGIGDTI----ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR 716
F++G+ D + AD I ++ V+ + + S + G+
Sbjct: 822 GFTLGVEDILVKPNADVMRQRIIEESTQCGPRAVRAALNLPEAASCDEIQGK 873
Score = 38 (18.4 bits), Expect = 1.0e-15, Sum P(4) = 1.0e-15
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 372 LNLTYPETVTPYNIERLKELVEYGPHPP 399
L +TYP V + ++ EL E P P
Sbjct: 244 LTITYPAMVHKKSGQKDAELPEGAPAAP 271
>UNIPROTKB|F1NJE0 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF04998 Pfam:PF05000 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AADN02014782 EMBL:AADN02014783
IPI:IPI00819994 Ensembl:ENSGALT00000037150 OMA:QKKMARV
ArrayExpress:F1NJE0 Uniprot:F1NJE0
Length = 917
Score = 377 (137.8 bits), Expect = 9.5e-61, Sum P(3) = 9.5e-61
Identities = 86/220 (39%), Positives = 129/220 (58%)
Query: 665 LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
+++ + GI A ET + + K +L K +D ++ + + ++ N
Sbjct: 17 IIKKSSQCGIEVVRAALNLPETSSCEDVQGKWQDAHLCKDQRDFNMVDLKFKEEVNNYNN 76
Query: 725 KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
+VN+V +S E NNL+ MV +G+KGS +N Q++ +GQ +EG+R P
Sbjct: 77 EVNKVCMPF------GLHRSFPE-NNLQLMVQSGAKGSTVNTVQISCLLGQIELEGRRPP 129
Query: 785 FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
++LP F D+ P S GFV +L G+ P EFFFH M GREGL+DTAVKTS +GY
Sbjct: 130 LMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGY 189
Query: 845 IQRR--LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
+QR ++K +E ++V+YD TVR+S G V+QFLYGEDG+D
Sbjct: 190 LQRNRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 229
Score = 227 (85.0 bits), Expect = 9.5e-61, Sum P(3) = 9.5e-61
Identities = 50/102 (49%), Positives = 67/102 (65%)
Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK-K 1119
++ +SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ VA
Sbjct: 403 KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASAN 462
Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEV 1161
IKTP +SV + G ++ K ++ L L V + E+
Sbjct: 463 IKTPMMSVPVL-GTKKAHKKVKQLKKQLTRVCLAEVLQKVEL 503
Score = 163 (62.4 bits), Expect = 9.5e-61, Sum P(3) = 9.5e-61
Identities = 38/131 (29%), Positives = 71/131 (54%)
Query: 1285 GVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
G+NL + + D+ D R SN + + + GIE+ R ++ E++ V + G V+ RHL
Sbjct: 779 GINLAELFRYSDILDLNRLYSNDIHAMAKNYGIESALRVVIKEIKDVFAVYGIVVDPRHL 838
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
+++ D M + G + R GI ++ + P+ + +FE + L +A + D LR + +
Sbjct: 839 SLVADYMCFEGVYKPMNRFGI-QSSSSPLQQMTFETSYKFLKEATMMGAHDELRSPSACL 897
Query: 1404 MLGQLAPIGTG 1414
+LG++ GTG
Sbjct: 898 VLGKVVKGGTG 908
Score = 49 (22.3 bits), Expect = 7.9e-26, Sum P(3) = 7.9e-26
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 166 KNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
K++GGC QP L+ + +K + K QR D E
Sbjct: 381 KSRGGC--MQPALSSDRLKDLLYLKWQRSLCDPGE 413
Score = 47 (21.6 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 16/71 (22%), Positives = 33/71 (46%)
Query: 679 ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
A K +E + D KA+NN + + ++K ++ EP ++ E K+ + +E
Sbjct: 576 ATRKDLEGVGDK-GKAQNNQEAPEGEEEEKIVDAEPDEGDGDATEAKMRR---NQEEEVD 631
Query: 739 SSAQKSLSESN 749
+++ E N
Sbjct: 632 YESEEENGEEN 642
Score = 40 (19.1 bits), Expect = 2.0e-05, Sum P(3) = 2.0e-05
Identities = 14/63 (22%), Positives = 31/63 (49%)
Query: 717 TMMESFENKVNQVLNTARDEA-GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQ 775
++ E+FE+ V +N ++ G Q +LS S+ LK ++ + S + + +
Sbjct: 362 SVSETFESGVEDYINKRECKSRGGCMQPALS-SDRLKDLLYLKWQRSLCDPGEAVGLLAA 420
Query: 776 QNV 778
Q++
Sbjct: 421 QSI 423
Score = 38 (18.4 bits), Expect = 1.1e-24, Sum P(3) = 1.1e-24
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 372 LNLTYPETVTPYNIERLKELVEYGPH 397
++L + E V YN E K + +G H
Sbjct: 63 VDLKFKEEVNNYNNEVNKVCMPFGLH 88
>TIGR_CMR|BA_0103 [details] [associations]
symbol:BA_0103 "DNA-directed RNA polymerase, beta' subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 EMBL:X89230 RefSeq:NP_842671.2
RefSeq:YP_016708.1 RefSeq:YP_026389.1 ProteinModelPortal:P77819
IntAct:P77819 DNASU:1086436 EnsemblBacteria:EBBACT00000011911
EnsemblBacteria:EBBACT00000018208 EnsemblBacteria:EBBACT00000020960
GeneID:1086436 GeneID:2818165 GeneID:2851002 KEGG:ban:BA_0103
KEGG:bar:GBAA_0103 KEGG:bat:BAS0103 HOGENOM:HOG000218387
BioCyc:BANT260799:GJAJ-114-MONOMER
BioCyc:BANT261594:GJ7F-116-MONOMER Uniprot:P77819
Length = 1203
Score = 209 (78.6 bits), Expect = 6.4e-58, Sum P(8) = 6.4e-58
Identities = 59/165 (35%), Positives = 79/165 (47%)
Query: 241 PDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
P WMIL VL + DL +I N L+R GAP+ I+
Sbjct: 223 PSWMILDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQ 282
Query: 291 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
++LQ + DN G+P T RP+KS+ LK K+GR R NL+GKRVD+S R
Sbjct: 283 NEKRMLQEAVDALIDNGRRGRP-VTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGR 341
Query: 351 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 395
+VI P + + Q G+P +AL L P +KELVE G
Sbjct: 342 SVIVVGPNLKMYQCGLPKEMALELFKPFV--------MKELVEKG 378
Score = 179 (68.1 bits), Expect = 6.4e-58, Sum P(8) = 6.4e-58
Identities = 37/89 (41%), Positives = 55/89 (61%)
Query: 445 VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 504
VL NR P+LH++ I ++ RL+ V + YNADFDGD+M +HVP S E +AE
Sbjct: 410 VLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEA 469
Query: 505 LELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
LM+ + I++P+ +PV+ QD +LG
Sbjct: 470 RLLMLAAQNILNPKDGKPVVTPSQDMVLG 498
Score = 146 (56.5 bits), Expect = 6.4e-58, Sum P(8) = 6.4e-58
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
V GE +G +AAQSIGEP TQ+T+ TFH GV+ ++T G+PR++EI +S
Sbjct: 913 VEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIFEARNPKGQAVIS 972
Query: 1127 VF--LKPGVNSTKERAKNV 1143
+ +N K+R + V
Sbjct: 973 EIDGVIAAINDVKDRQEVV 991
Score = 141 (54.7 bits), Expect = 6.4e-58, Sum P(8) = 6.4e-58
Identities = 31/80 (38%), Positives = 52/80 (65%)
Query: 808 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 865
+++S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+ D GT R
Sbjct: 763 IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDDCGTDR 822
Query: 866 NSLGDVIQFLYGEDGMDSVW 885
L I+ G + ++S++
Sbjct: 823 GLLIGAIK--EGNEVIESLY 840
Score = 111 (44.1 bits), Expect = 6.4e-58, Sum P(8) = 6.4e-58
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 1351 TYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAP 1410
T R L+ IT+ + + + SF+ET +L DAA+ + D L G+ EN+++G+L P
Sbjct: 1114 TARPVLLGITKASLETDSF--LSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVP 1171
Query: 1411 IGTGDCSLYLNDEMLK 1426
GTG + Y +++K
Sbjct: 1172 AGTG-MNRYRKVDLVK 1186
Score = 80 (33.2 bits), Expect = 6.4e-58, Sum P(8) = 6.4e-58
Identities = 46/212 (21%), Positives = 91/212 (42%)
Query: 577 GKQVFNLIIPKQ---INLFRTAAWHADND-KGILTAGDTLVRIEKGELLSGTLCKKTLGT 632
GK +FN I+P+ IN + + K + G + I KK LG
Sbjct: 563 GKLIFNEILPESFPYINEPTNSNLEKETPAKYFVEKGANIKEIIASREEVAPFSKKILG- 621
Query: 633 STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTIS 692
++I +++ + L + L + + ++G+ D + + E +++ +
Sbjct: 622 ---NIIAEVFKRFKITETSRMLDRMKNLGFKYSTKAGITVGVSDILVLGEKDEILHE--A 676
Query: 693 KAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLK 752
+AK V N+IKQ + + E E ++ +V + + A+D KSL++ N +
Sbjct: 677 QAK--VDNVIKQFRRGLITEE------ERYD-RVISIWSNAKDVIQGKLMKSLNKRNPIF 727
Query: 753 AMVTAGSKGSFINISQMTACVG-QQNVEGKRI 783
M +G++G+ N +Q+ G N G+ I
Sbjct: 728 MMSDSGARGNASNFTQLAGMRGLMANPSGRII 759
Score = 62 (26.9 bits), Expect = 6.4e-58, Sum P(8) = 6.4e-58
Identities = 24/96 (25%), Positives = 40/96 (41%)
Query: 14 KVRMVQFG-ILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLGTIDRK-MKCETC 69
K+R +G + P+ I ++ + G ER G K + + K + C+ C
Sbjct: 19 KIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWECHCGKYKRVRYKGVVCDRC 78
Query: 70 TANMAECP---GHFGHLELAKPMFHIGFMKTVLSIM 102
+ GH+ELA P+ HI + K + S M
Sbjct: 79 GVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRM 114
Score = 58 (25.5 bits), Expect = 1.6e-57, Sum P(8) = 1.6e-57
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 11 EVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDRKMKC 66
+V ++ G+ SPD+IR S +++ ET KP+ GL R+ + +C
Sbjct: 3 DVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC 60
Score = 53 (23.7 bits), Expect = 6.4e-58, Sum P(8) = 6.4e-58
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1350
E+++V I AV+ LL E++ V G + +H+ ++ M
Sbjct: 1032 ELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQM 1073
Score = 40 (19.1 bits), Expect = 1.3e-40, Sum P(8) = 1.3e-40
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 126 KIRNPKNRLKKILD 139
++ N NRLK++LD
Sbjct: 260 RVINRNNRLKRLLD 273
>UNIPROTKB|H9L2Z2 [details] [associations]
symbol:H9L2Z2 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008811 "chloramphenicol O-acetyltransferase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR001707 InterPro:IPR007066
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF04983 Pfam:PF04998 Pfam:PF05000 ProDom:PD002660
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
GO:GO:0008811 EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
Ensembl:ENSGALT00000036065 Uniprot:H9L2Z2
Length = 527
Score = 416 (151.5 bits), Expect = 1.2e-57, Sum P(3) = 1.2e-57
Identities = 107/286 (37%), Positives = 158/286 (55%)
Query: 613 VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL---GH--TQWLVNYWLL- 666
V I GELL G L K G+S L+H +E G + + K L G T +L Y +
Sbjct: 132 VIIRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLPCLGRLFTAYLQLYHVAC 191
Query: 667 --QNA--FSIGIGDTIADAKTMETI---NDTISKAKNNVKNLIKQAQDKSL-EPEPGRTM 718
+N F G + I + + + T ++ +++ + QD L + + M
Sbjct: 192 YGENLAYFPKGFIENITRLQLIHNLMYHTHTQETETSSCEDVQGKWQDAHLCKDQRDFNM 251
Query: 719 ME-SFENKVNQVLNTARDEAGS-SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 776
++ F+ +VN N +S E NNL+ MV +G+KGS +N Q++ +GQ
Sbjct: 252 VDLKFKEEVNNYNNEVNKVCMPFGLHRSFPE-NNLQLMVQSGAKGSTVNTVQISCLLGQI 310
Query: 777 NVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 836
+EG+R P ++LP F D+ P S GFV +L G+ P EFFFH M GREGL+DTA
Sbjct: 311 ELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVDTA 370
Query: 837 VKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
VKTS +GY+QR ++K +E ++V+YD TVR+S G V+QFLYGEDG+D
Sbjct: 371 VKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 416
Score = 174 (66.3 bits), Expect = 1.2e-57, Sum P(3) = 1.2e-57
Identities = 53/175 (30%), Positives = 83/175 (47%)
Query: 490 MNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVF 549
MN H PQ+ RAE L + + P+ +P+ G++QD ++ +T R F ++ +
Sbjct: 1 MNAHFPQNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQY 60
Query: 550 MNILM-WWEDFDGKVPQ--PTILKPRPLWTGKQVFNL----IIPKQ---INLFRTAAWHA 599
M ++ D G++ P I+KP+ LWTGKQV + IIP+ +NL A
Sbjct: 61 MELVYRGLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHVPLNLTGKAKLVV 120
Query: 600 DNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
++R GELL G L K G+S L+H +E G + + K L
Sbjct: 121 VFFLNSCFLFQVIIR--SGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVL 173
Score = 73 (30.8 bits), Expect = 1.2e-57, Sum P(3) = 1.2e-57
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPA 1085
++ +SL PGE +G +AAQSIGEP+
Sbjct: 503 KWQRSLCDPGEAVGLLAAQSIGEPS 527
>UNIPROTKB|P37871 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0046677
GO:GO:0006351 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
EMBL:D64127 EMBL:L24376 KO:K03046 ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 HOGENOM:HOG000218387 EMBL:L43593 PIR:G69698
RefSeq:NP_387989.2 ProteinModelPortal:P37871 SMR:P37871
DIP:DIP-49022N IntAct:P37871 PRIDE:P37871
EnsemblBacteria:EBBACT00000003012 GeneID:935977 KEGG:bsu:BSU01080
PATRIC:18971725 GenoList:BSU01080 BioCyc:BSUB:BSU01080-MONOMER
Uniprot:P37871
Length = 1199
Score = 209 (78.6 bits), Expect = 2.0e-57, Sum P(8) = 2.0e-57
Identities = 59/166 (35%), Positives = 80/166 (48%)
Query: 240 RPDWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
+P WMIL VL + DL +I N L+R GAP+ I+
Sbjct: 222 KPSWMILDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIV 281
Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
++LQ + DN G+P T RP+KS+ LK K+GR R NL+GKRVD+S
Sbjct: 282 QNEKRMLQEAVDALIDNGRRGRP-VTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSG 340
Query: 350 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 395
R+VI P + + Q G+P +AL L P +KELVE G
Sbjct: 341 RSVIVVGPHLKMYQCGLPKEMALELFKPFV--------MKELVEKG 378
Score = 179 (68.1 bits), Expect = 2.0e-57, Sum P(8) = 2.0e-57
Identities = 37/89 (41%), Positives = 55/89 (61%)
Query: 445 VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 504
VL NR P+LH++ I ++ RL+ V + YNADFDGD+M +HVP S E +AE
Sbjct: 410 VLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEA 469
Query: 505 LELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
LM+ + I++P+ +PV+ QD +LG
Sbjct: 470 RILMLAAQNILNPKDGKPVVTPSQDMVLG 498
Score = 143 (55.4 bits), Expect = 2.0e-57, Sum P(8) = 2.0e-57
Identities = 25/47 (53%), Positives = 36/47 (76%)
Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREI 1113
V GE +G +AAQSIGEP TQ+T+ TFH GV+ ++T G+PR++E+
Sbjct: 913 VEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL 959
Score = 131 (51.2 bits), Expect = 2.0e-57, Sum P(8) = 2.0e-57
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 808 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 865
+++S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++++ GT R
Sbjct: 763 IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIIRETDCGTDR 822
Query: 866 NSL 868
L
Sbjct: 823 GIL 825
Score = 109 (43.4 bits), Expect = 2.0e-57, Sum P(8) = 2.0e-57
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 1351 TYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAP 1410
T R L+ IT+ + + + SF+ET +L DAA+ + D L G+ EN+++G+L P
Sbjct: 1115 TGRPVLLGITKASLETDSF--LSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVP 1172
Query: 1411 IGTG 1414
GTG
Sbjct: 1173 AGTG 1176
Score = 92 (37.4 bits), Expect = 2.0e-57, Sum P(8) = 2.0e-57
Identities = 45/213 (21%), Positives = 88/213 (41%)
Query: 577 GKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTS--- 633
GK VFN I+P+ +K D +EKG + + ++ +
Sbjct: 563 GKLVFNEILPESFPYMNEPTKSNIEEK----TPDRFF-LEKGADVKAVIAQQPINAPFKK 617
Query: 634 --TGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTI 691
G +I I++ K L + L + + ++G+ D + ++ + +
Sbjct: 618 GILGKIIAEIFKRFHITETSKMLDRMKNLGFKYSTKAGITVGVSDIVV----LDDKQEIL 673
Query: 692 SKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNL 751
+A++ V N++KQ + + E E +E +V + + A+D KSL E N +
Sbjct: 674 EEAQSKVDNVMKQFRRGLITEE------ERYE-RVISIWSAAKDVIQGKLMKSLDELNPI 726
Query: 752 KAMVTAGSKGSFINISQMTACVG-QQNVEGKRI 783
M +G++G+ N +Q+ G N G+ I
Sbjct: 727 YMMSDSGARGNASNFTQLAGMRGLMANPAGRII 759
Score = 65 (27.9 bits), Expect = 2.0e-57, Sum P(8) = 2.0e-57
Identities = 25/96 (26%), Positives = 40/96 (41%)
Query: 14 KVRMVQFG-ILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLGTIDRK-MKCETC 69
K+R FG + P+ I ++ + G ER G K + + K + C+ C
Sbjct: 19 KIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWECHCGKYKRVRYKGVVCDRC 78
Query: 70 TANMAECP---GHFGHLELAKPMFHIGFMKTVLSIM 102
+ GH+ELA P+ HI + K + S M
Sbjct: 79 GVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRM 114
Score = 56 (24.8 bits), Expect = 1.6e-56, Sum P(8) = 1.6e-56
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 11 EVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDRKMKC 66
+V + G+ SPD+IR S +++ ET KP+ GL R+ + +C
Sbjct: 3 DVNNFEYMNIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC 60
Score = 48 (22.0 bits), Expect = 2.0e-57, Sum P(8) = 2.0e-57
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1350
E+++V + V+ LL E++ V G + +H+ ++ M
Sbjct: 1033 ELLKVTDLTTVQEYLLHEVQKVYRMQGVEIGDKHVEVMVRQM 1074
Score = 40 (19.1 bits), Expect = 4.0e-40, Sum P(8) = 4.0e-40
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 126 KIRNPKNRLKKILD 139
++ N NRLK++LD
Sbjct: 260 RVINRNNRLKRLLD 273
>TIGR_CMR|CHY_2317 [details] [associations]
symbol:CHY_2317 "DNA-directed RNA polymerase, beta'
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 InterPro:IPR012756
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 TIGRFAMs:TIGR02388 OMA:DINDKHI
ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 HOGENOM:HOG000218387
RefSeq:YP_361126.1 ProteinModelPortal:Q3A9Q8 SMR:Q3A9Q8
STRING:Q3A9Q8 PRIDE:Q3A9Q8 GeneID:3727667 KEGG:chy:CHY_2317
PATRIC:21277703 BioCyc:CHYD246194:GJCN-2316-MONOMER Uniprot:Q3A9Q8
Length = 1152
Score = 215 (80.7 bits), Expect = 6.7e-54, Sum P(8) = 6.7e-54
Identities = 70/229 (30%), Positives = 106/229 (46%)
Query: 182 GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
G + I E A+ ++ +L E K++ T +R + L+R+ + N RP
Sbjct: 171 GAEAIKELLAEIDLDELSAELK--AEIKES-TGQRRIRALRRLEVVESFRKSGN----RP 223
Query: 242 DWMILQVL----------XXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
+WMIL V+ + DL +I N L+R GAP I+
Sbjct: 224 EWMILDVIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIVRN 283
Query: 292 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
++LQ + DN G+P T RP+KS+ LK K+GR R NL+GKRVD+S R+
Sbjct: 284 EKRMLQEAVDALIDNGRRGRP-VTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRS 342
Query: 352 VITPDPTINIDQLGVPWSIALNLTYPETVTP-------YNIERLKELVE 393
VI P + + Q G+P +AL L P + +NI+ K +VE
Sbjct: 343 VIVVGPELKLHQCGLPKEMALELFKPFVMKKLVADGIAHNIKSAKRMVE 391
Score = 175 (66.7 bits), Expect = 6.7e-54, Sum P(8) = 6.7e-54
Identities = 65/217 (29%), Positives = 104/217 (47%)
Query: 445 VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 504
VL NR P+LH++ I ++ +++ V + YNADFDGD+M +HVP S E +AE
Sbjct: 410 VLLNRAPTLHRLGIQAFEPVLVEGRAIQIHPLVCTAYNADFDGDQMAVHVPLSAEAQAEA 469
Query: 505 LELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKIT--KRDTFIEKDVFMN---ILMWWEDF 559
LM+ I++P+ +PV+ QD ++G +T K E F + ++M +E+
Sbjct: 470 RLLMLSSHNILNPKDGKPVVVPTQDMVIGSYYLTVEKPGAKGEGKKFAHPEEVIMAYEE- 528
Query: 560 DGKVPQPTILKPR-PL---------WTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAG 609
G + T +K R P+ G+ +FN +IP+++ K I+T
Sbjct: 529 -GVIELHTKIKVRYPIRGEIVELETTPGRIIFNEVIPEELRFINHLVDKKALGK-IVTES 586
Query: 610 DTLVRIEK-GELLSGTLCKKTLG----TSTGSLIHVI 641
+ EK G LL G K LG T G I ++
Sbjct: 587 YRKLGYEKTGYLLDGL---KKLGFHYATKAGLTIGIV 620
Score = 156 (60.0 bits), Expect = 6.7e-54, Sum P(8) = 6.7e-54
Identities = 45/131 (34%), Positives = 68/131 (51%)
Query: 997 EAVDKLQER-LKVVPGEDPLSVEA-----QKNATLFFNILLRSTFAS-KRVLKEHRLTRE 1049
+ ++KL++R L V ED + E KN + I + A+ K+V LT
Sbjct: 795 DVIEKLEDRILGRVAAEDVVHPETGELLVAKNQEITEEIAEKIVSANIKKVKIRSVLTCR 854
Query: 1050 AFEWVIGEIESRFL--QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGV 1107
V R L S+V GE +G +AAQSIGEP TQ+T+ TFH GV+ +++T G+
Sbjct: 855 TRHGVCTRCYGRNLATNSIVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGL 914
Query: 1108 PRLREIINVAK 1118
PR+ E+ +
Sbjct: 915 PRVEELFEARR 925
Score = 122 (48.0 bits), Expect = 6.7e-54, Sum P(8) = 6.7e-54
Identities = 21/52 (40%), Positives = 37/52 (71%)
Query: 808 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
++ ++ GLT E+F G R+GL DTA++T+++GY+ RRLV +D++V+
Sbjct: 724 IKANFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVCQDVIVR 775
Score = 98 (39.6 bits), Expect = 6.7e-54, Sum P(8) = 6.7e-54
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 1356 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
L+ IT+ + + + SF+ET +L +AA+ + D L G+ EN+++G+L P GTG
Sbjct: 1081 LLGITKASLATDSF--LSAASFQETTRVLTEAAIKGKVDPLLGLKENVIIGKLIPAGTG 1137
Score = 62 (26.9 bits), Expect = 6.7e-54, Sum P(8) = 6.7e-54
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1350
++I+V GIE + LL E++ V G +N +H+ ++ M
Sbjct: 994 DLIKVKGIEGAQLYLLQEVQKVYRMQGVEINDKHIEVVIRQM 1035
Score = 57 (25.1 bits), Expect = 6.7e-54, Sum P(8) = 6.7e-54
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 66 CETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLSIM 102
C+ C + GH+ELA P+ HI + K + S M
Sbjct: 75 CDRCGVEVTRSKVRRERLGHIELAAPVSHIWYFKGIPSRM 114
Score = 54 (24.1 bits), Expect = 6.7e-54, Sum P(8) = 6.7e-54
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDRKMKC 66
++ G+ SPD+IR S +++ ET KP+ GL R+ + +C
Sbjct: 10 IKIGLASPDQIRAWSHGEVKKPETINYRTLKPERDGLFCERIFGPTKDWEC 60
Score = 46 (21.3 bits), Expect = 1.2e-40, Sum P(7) = 1.2e-40
Identities = 20/70 (28%), Positives = 34/70 (48%)
Query: 1254 APKGELNDESAEDDVF--LKKIE-SNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEI 1310
A E+ +E AE V +KK++ ++LT GV C+ R +N +++I
Sbjct: 824 AKNQEITEEIAEKIVSANIKKVKIRSVLTCRTRHGV---CTRCY----GRNLATNSIVDI 876
Query: 1311 IEVLGIEAVR 1320
E +GI A +
Sbjct: 877 GEAVGIIAAQ 886
>UNIPROTKB|H9L2Z1 [details] [associations]
symbol:H9L2Z1 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007066 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF04983 Pfam:PF04998 Pfam:PF05000
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
Ensembl:ENSGALT00000036064 Uniprot:H9L2Z1
Length = 522
Score = 527 (190.6 bits), Expect = 7.5e-54, Sum P(2) = 7.5e-54
Identities = 151/429 (35%), Positives = 224/429 (52%)
Query: 490 MNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVF 549
MN H PQ+ RAE L + + P+ +P+ G++QD ++ +T R F ++ +
Sbjct: 1 MNAHFPQNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQY 60
Query: 550 MNILM-WWEDFDGKVPQ--PTILKPRPLWTGKQVFNL----IIPKQ---INLFRTA---- 595
M ++ D G++ P I+KP+ LWTGKQV + IIP+ +NL A
Sbjct: 61 MELVYRGLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHVPLNLTGKAKIGG 120
Query: 596 -AWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
AW N+K I I GELL G L K G+S L+H +E G + + K L
Sbjct: 121 KAW-GKNEKVI---------IRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVL 170
Query: 655 ---GH--TQWLVNY--------WLLQNAFSIGI--------GDTIADAKTMETINDTISK 693
G T +L Y LL+ F G D D++T + D K
Sbjct: 171 PCLGRLFTAYLQLYRFKRGQYGQLLRPRFHHGQILYARRQGADAAGDSET-SSCEDVQGK 229
Query: 694 AKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKA 753
++ +L K +D ++ + + ++ N+VN+V +S E NNL+
Sbjct: 230 WQD--AHLCKDQRDFNMVDLKFKEEVNNYNNEVNKVCMPF------GLHRSFPE-NNLQL 280
Query: 754 MVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYL 813
MV +G+KGS +N Q++ +GQ +EG+R P ++LP F D+ P S GFV +L
Sbjct: 281 MVQSGAKGSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFL 340
Query: 814 RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQ 873
G+ P EFFFH M GREGL+DTAVKTS +GY+QR ++K +E ++V+YD TVR+S G V+Q
Sbjct: 341 TGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQ 400
Query: 874 FLYGEDGMD 882
FLYGEDG+D
Sbjct: 401 FLYGEDGLD 409
Score = 73 (30.8 bits), Expect = 7.5e-54, Sum P(2) = 7.5e-54
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPA 1085
++ +SL PGE +G +AAQSIGEP+
Sbjct: 498 KWQRSLCDPGEAVGLLAAQSIGEPS 522
>UNIPROTKB|P0A674 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006351 EMBL:BX842574
Gene3D:2.40.40.20 InterPro:IPR009010 DrugBank:DB01045 GO:GO:0003899
eggNOG:COG0086 EMBL:L27989 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G70535
RefSeq:NP_215182.1 RefSeq:NP_335108.1 RefSeq:YP_006514010.1
ProteinModelPortal:P0A674 SMR:P0A674 IntAct:P0A674 PRIDE:P0A674
EnsemblBacteria:EBMYCT00000001410 EnsemblBacteria:EBMYCT00000072799
GeneID:13318555 GeneID:888177 GeneID:925980 KEGG:mtc:MT0696
KEGG:mtu:Rv0668 KEGG:mtv:RVBD_0668 PATRIC:18123251
TubercuList:Rv0668 DrugBank:DB01201 Uniprot:P0A674
Length = 1316
Score = 208 (78.3 bits), Expect = 4.4e-53, Sum P(10) = 4.4e-53
Identities = 47/119 (39%), Positives = 66/119 (55%)
Query: 259 SDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRS 318
+ DL +I N L+R GAP I++ ++LQ + FDN G+P T
Sbjct: 337 TSDLNDLYRRVINRNNRLKRLIDLGAPEIIVNNEKRMLQESVDALFDNGRRGRP-VTGPG 395
Query: 319 GRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYP 377
RP+KS+ LK K+GR R NL+GKRVD+S R+VI P + + Q G+P +AL L P
Sbjct: 396 NRPLKSLSDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKP 454
Score = 156 (60.0 bits), Expect = 4.4e-53, Sum P(10) = 4.4e-53
Identities = 35/94 (37%), Positives = 52/94 (55%)
Query: 445 VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 504
VL NR P+LH++ I ++ +L+ V +NADFDGD+M +H+P S E +AE
Sbjct: 496 VLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQMAVHLPLSAEAQAEA 555
Query: 505 LELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKIT 538
LM+ I+SP S RP+ D + G +T
Sbjct: 556 RILMLSSNNILSPASGRPLAMPRLDMVTGLYYLT 589
Score = 137 (53.3 bits), Expect = 4.4e-53, Sum P(10) = 4.4e-53
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV-AKKIKTPS 1124
LV GE +G VAAQSIGEP TQ+T+ TFH GV +++T G+PR++E+ + K P
Sbjct: 988 LVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGVG-EDITGGLPRVQELFEARVPRGKAPI 1046
Query: 1125 LSV 1127
V
Sbjct: 1047 ADV 1049
Score = 131 (51.2 bits), Expect = 4.4e-53, Sum P(10) = 4.4e-53
Identities = 23/52 (44%), Positives = 39/52 (75%)
Query: 808 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
V++S+ GLT E+F + G R+GL DTA++T+++GY+ RRLV +D++V+
Sbjct: 836 VKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVR 887
Score = 120 (47.3 bits), Expect = 4.4e-53, Sum P(10) = 4.4e-53
Identities = 38/111 (34%), Positives = 56/111 (50%)
Query: 1356 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGD 1415
LM IT+ + D+ + SF+ET +L DAA+ SD L G+ EN+++G+L P GTG
Sbjct: 1207 LMGITKASL-ATDSW-LSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPAGTG- 1263
Query: 1416 CSLYLNDEMLKN----AIELQLPSYMEGL---EFGM-TPARSPVSGTPYHD 1458
+ Y N + A +PSY + +FG T A P+ Y D
Sbjct: 1264 INRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVPLDDYGYSD 1314
Score = 71 (30.1 bits), Expect = 4.4e-53, Sum P(10) = 4.4e-53
Identities = 27/123 (21%), Positives = 54/123 (43%)
Query: 663 YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
YW ++ ++ + D + + E + D + + V+ KQ Q +L + E
Sbjct: 722 YWATRSGVTVSMADVLVPPRKKEIL-DHYEERADKVE---KQFQRGALNHD------ERN 771
Query: 723 ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQ-QNVEGK 781
E V ++ A DE G + ++ + N + +V +G+ G+F + G N +G+
Sbjct: 772 EALV-EIWKEATDEVGQALREHYPDDNPIITIVDSGATGNFTQTRTLAGMKGLVTNPKGE 830
Query: 782 RIP 784
IP
Sbjct: 831 FIP 833
Score = 60 (26.2 bits), Expect = 4.4e-53, Sum P(10) = 4.4e-53
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 66 CETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLS 100
CE C + GH+ELA P+ HI + K V S
Sbjct: 75 CERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPS 112
Score = 52 (23.4 bits), Expect = 3.0e-13, Sum P(6) = 3.0e-13
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 909 MDEE-NWNPNYMLQ-EYIDDLKTIKELRD-VFDAEVQKLEADRYQLATE 954
+DEE N L+ E + K +++ RD +A QKLEAD +L E
Sbjct: 139 VDEEMRHNELSTLEAEMAVERKAVEDQRDGELEARAQKLEADLAELEAE 187
Score = 46 (21.3 bits), Expect = 4.4e-53, Sum P(10) = 4.4e-53
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDRKMKC 66
++ G+ + ++IRQ S +++ ET KP+ GL ++ R +C
Sbjct: 10 LRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC 60
Score = 44 (20.5 bits), Expect = 4.4e-53, Sum P(10) = 4.4e-53
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYR 1353
E++ V G V+ L+ E++ V G ++ +H+ ++ M R
Sbjct: 1120 EVLRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRR 1164
Score = 44 (20.5 bits), Expect = 4.4e-53, Sum P(10) = 4.4e-53
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 186 IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
+AE +A+ K D + ++ + ER+ +R L R+ D L PK
Sbjct: 181 LAELEAEGAKADARRKVRDGGEREMRQIRDRAQRELDRLEDIWSTFTKLAPK 232
Score = 41 (19.5 bits), Expect = 8.1e-20, Sum P(7) = 8.1e-20
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYK----VERHLNDGDFVLFNRQ 450
I+ DDG ++ Y K S L + +K ER L+DGD V +Q
Sbjct: 1066 IVPDDGGE-EVVYDKISKRQRLRV-FKHEDGSERVLSDGDHVEVGQQ 1110
Score = 38 (18.4 bits), Expect = 3.3e-35, Sum P(9) = 3.3e-35
Identities = 6/14 (42%), Positives = 11/14 (78%)
Query: 126 KIRNPKNRLKKILD 139
++ N NRLK+++D
Sbjct: 346 RVINRNNRLKRLID 359
>TAIR|locus:2015163 [details] [associations]
symbol:NRPD1A "nuclear RNA polymerase D1A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA;IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0031047 "gene silencing by RNA"
evidence=RCA;IMP] [GO:0000418 "DNA-directed RNA polymerase IV
complex" evidence=IDA;IPI] [GO:0007267 "cell-cell signaling"
evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010495
"long-distance posttranscriptional gene silencing" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015801
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011000
GO:GO:0003677 GO:GO:0007267 GO:GO:0006351 GO:GO:0005507
GO:GO:0048038 GO:GO:0009308 Gene3D:3.10.450.40 GO:GO:0030422
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0006346
EMBL:AC010795 EMBL:AY826515 EMBL:DQ020657 IPI:IPI00523111
PIR:D96655 RefSeq:NP_001185298.1 RefSeq:NP_176490.2
UniGene:At.36192 ProteinModelPortal:Q9LQ02 SMR:Q9LQ02
DIP:DIP-48679N STRING:Q9LQ02 PaxDb:Q9LQ02 PRIDE:Q9LQ02
EnsemblPlants:AT1G63020.1 EnsemblPlants:AT1G63020.2 GeneID:842605
KEGG:ath:AT1G63020 TAIR:At1g63020 eggNOG:COG0086
HOGENOM:HOG000083760 InParanoid:Q9LQ02 KO:K16250 OMA:HQHSLIA
PhylomeDB:Q9LQ02 ProtClustDB:CLSN2680546 Genevestigator:Q9LQ02
GO:GO:0000418 GO:GO:0010495 InterPro:IPR021602 Pfam:PF11523
Uniprot:Q9LQ02
Length = 1453
Score = 344 (126.2 bits), Expect = 3.2e-52, Sum P(5) = 3.2e-52
Identities = 124/475 (26%), Positives = 227/475 (47%)
Query: 340 LMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 399
L+GKR D + RTV+ DP++ ++++G+P SIA L E + N ERL + + P
Sbjct: 313 LLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERL--VTSFVPTLL 370
Query: 400 PGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM 459
K ++ R G RL + +D L+ G K+ R L DGD VL NR PS+H+ S++
Sbjct: 371 DNKE--MHVRR--GDRL---VAIQVND--LQTGDKIFRSLMDGDTVLMNRPPSIHQHSLI 421
Query: 460 GHRIKIMPY-STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 518
++I+P S LN P+ DFDGD ++ +VPQS + + E+ EL+ + K +++ Q
Sbjct: 422 AMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVELDELVALDKQLINRQ 481
Query: 519 SNRPVMGIVQDTLLGCRKIT-KRDTFIEKDVFMNILMWWEDFDGKVPQPTILK--P---R 572
+ R ++ + QD+L + +++ ++ + + M+ F ++P P I+K P
Sbjct: 482 NGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQLQMYCP-F--QLPPPAIIKASPSSTE 538
Query: 573 PLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGT 632
P WTG Q+F ++ P + ++ +L+ + + GE G ++ L
Sbjct: 539 PQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGE---GNFIERLLKH 595
Query: 633 STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTM-ETINDTI 691
G ++ +I+ +A++ L +QWL+ L + + + + K + E I+ +
Sbjct: 596 DKGKVLDIIY------SAQEML--SQWLLMRGLSVSLADLYLSSDLQSRKNLTEEISYGL 647
Query: 692 SKAKN--NVKNLIKQA---------QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSS 740
+A+ N + L+ ++ +DK E +E + + L+ A
Sbjct: 648 REAEQVCNKQQLMVESWRDFLAVNGEDKE-EDSVSDLARFCYERQKSATLSELAVSAFKD 706
Query: 741 AQKSLS--------ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 787
A + + +SN+ M AGSKG+ + Q + C+G QN + FGF
Sbjct: 707 AYRDVQALAYRYGDQSNSFLIMSKAGSKGNIGKLVQHSMCIGLQN-SAVSLSFGF 760
Score = 182 (69.1 bits), Expect = 3.2e-52, Sum P(5) = 3.2e-52
Identities = 56/151 (37%), Positives = 74/151 (49%)
Query: 747 ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTL-------PHFT--- 796
+SN+ M AGSKG+ + Q + C+G QN + FGF R L P+
Sbjct: 721 QSNSFLIMSKAGSKGNIGKLVQHSMCIGLQN-SAVSLSFGF-PRELTCAAWNDPNSPLRG 778
Query: 797 ---KDDYGPESR---GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
KD ES G +ENS+L GL P E F H++ R+ G + RRL+
Sbjct: 779 AKGKDSTTTESYVPYGVIENSFLTGLNPLESFVHSVTSRDSSFSG--NADLPGTLSRRLM 836
Query: 851 KAMEDIMVKYDGTVRNSLGD-VIQFLYGEDG 880
M DI YDGTVRNS G+ ++QF Y DG
Sbjct: 837 FFMRDIYAAYDGTVRNSFGNQLVQFTYETDG 867
Score = 106 (42.4 bits), Expect = 3.2e-52, Sum P(5) = 3.2e-52
Identities = 41/185 (22%), Positives = 78/185 (42%)
Query: 1241 DKLILRIRIMNDEAPKG-ELNDESAEDDVFLKKIESNMLTEMALRGV-NLLAVMC---HE 1295
D+ I ++ I+ + PK + N +++LK M + R L C +
Sbjct: 1079 DQGIKKVNILWTDRPKAPKRNGNHLAGELYLKV---TMYGDRGKRNCWTALLETCLPIMD 1135
Query: 1296 DVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1355
+D R+ +++ + V GI+A R + L +S G + HL ++ D+++ G
Sbjct: 1136 MIDWGRSHPDNIRQCCSVYGIDAGRSIFVANLESAVSDTGKEILREHLLLVADSLSVTGE 1195
Query: 1356 LMAITRHGINR-----NDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAP 1410
+A+ G ++ + P + F L AA D L+G + + G++
Sbjct: 1196 FVALNAKGWSKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDDLQGSIDALAWGKVPG 1255
Query: 1411 IGTGD 1415
GTGD
Sbjct: 1256 FGTGD 1260
Score = 103 (41.3 bits), Expect = 3.2e-52, Sum P(5) = 3.2e-52
Identities = 27/102 (26%), Positives = 49/102 (48%)
Query: 12 VAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC-T 70
V + + F I + ++ +MSV+++E P ++D RLG + C TC +
Sbjct: 12 VGTLTSIGFSISNNNDRDKMSVLEVE----------APNQVTDSRLGLPNPDSVCRTCGS 61
Query: 71 ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI 112
+ C GHFG + A + + F+K V +++ +C C I
Sbjct: 62 KDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKICPGCKYI 103
Score = 59 (25.8 bits), Expect = 3.2e-52, Sum P(5) = 3.2e-52
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 1195 ISPWLLRIELNREMMVDKKLSMAAVAEKINQEF 1227
+SPW+ ++ +++ K+LS +V +N+++
Sbjct: 977 LSPWVCHFHISEKVLKRKQLSAESVVSSLNEQY 1009
Score = 40 (19.1 bits), Expect = 1.1e-14, Sum P(4) = 1.1e-14
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 514 IVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
I++P + V ++ GC+ I K+ I +D
Sbjct: 80 IINPYFLKEVAALLNKICPGCKYIRKKQFQITED 113
>UNIPROTKB|Q9KV29 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
PIR:G82336 RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 203 (76.5 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 62/206 (30%), Positives = 95/206 (46%)
Query: 182 GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
G + I + A + EQ+ E ++ + T + L KR+ + + N +P
Sbjct: 181 GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKL--TKRLKLVEAFVASGN----KP 234
Query: 242 DWMILQVLXXX----------XXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
+WMIL VL + DL +I N L+R AP I+
Sbjct: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRN 294
Query: 292 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
++LQ + DN G+ T + RP+KS+ +K K+GR R NL+GKRVD+S R+
Sbjct: 295 EKRMLQESVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353
Query: 352 VITPDPTINIDQLGVPWSIALNLTYP 377
VIT P + + Q G+P +AL L P
Sbjct: 354 VITVGPYLRLHQCGLPKKMALELFKP 379
Score = 174 (66.3 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 37/95 (38%), Positives = 55/95 (57%)
Query: 445 VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 504
VL NR P+LH++ I ++ +L+ V + YNADFDGD+M +HVP + E + E
Sbjct: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
Query: 505 LELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 539
LMM I+SP S P++ QD +LG +T+
Sbjct: 481 RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTR 515
Score = 124 (48.7 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 51/196 (26%), Positives = 88/196 (44%)
Query: 671 SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
S+GI D + A I ++A+ V+ + +Q Q + T E + NKV +
Sbjct: 638 SVGIDDMVVPAAKYTEI----AEAEEEVREIQEQFQSGLV------TAGERY-NKVIDIW 686
Query: 731 NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
+ D + ++LS + + SF +I M + + R G R
Sbjct: 687 ASTNDRVAKAMMENLSSEQVINRQGEQEKQESFNSIYMMADSGARGSAAQIRQLAGM--R 744
Query: 791 TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
L + D G + ++ GL ++F G R+GL DTA+KT+ +GY+ RRLV
Sbjct: 745 GL--MARPD-GSIIETPITANFKEGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLV 801
Query: 851 KAMEDIMV-KYD-GTV 864
+D++V ++D GT+
Sbjct: 802 DVAQDVVVTEHDCGTL 817
Score = 122 (48.0 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 1352 YRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPI 1411
+ L+ IT+ + + SF+ET +L +AAV + D LRG+ EN+++G+L P
Sbjct: 1301 FERELLGITKASLATESF--ISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPA 1358
Query: 1412 GTGDCSLYLNDEMLKNAIELQLPS 1435
GTG Y D K A E Q PS
Sbjct: 1359 GTGFA--YHQDRQAKRAQEQQGPS 1380
Score = 110 (43.8 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
LV GE +G +AAQSIGEP TQ+T+ TFH G ++
Sbjct: 908 LVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAS 942
Score = 69 (29.3 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 62 RKMKCETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLS 100
R + CE C + + GH+ELA P+ HI F+K++ S
Sbjct: 81 RGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSLPS 122
Score = 55 (24.4 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 1296 DVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1350
DV A S H +I+ + GI AV + +E++ V G +N +H+ + M
Sbjct: 1207 DVIADGPESPH--DILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQM 1259
Score = 53 (23.7 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRL-GTI-DRKMKC 66
++ G+ SPD IR S +++ ET KP+ GL R+ G + D + C
Sbjct: 20 IKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72
Score = 46 (21.3 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 1101 KNVTLGVPRLREIINVAKKIKTPSL 1125
K++T G+PR+ ++ A+K K P++
Sbjct: 1132 KDITGGLPRVADLFE-ARKPKEPAI 1155
Score = 44 (20.5 bits), Expect = 4.3e-35, Sum P(7) = 4.3e-35
Identities = 23/108 (21%), Positives = 45/108 (41%)
Query: 646 GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
G D ++ + +VN L + + +GDT+A N I+ V +L +
Sbjct: 1092 GTDMPAQYFLPGKAIVN---LDDGAEVNVGDTLARIPQKSGGNKDITGGLPRVADLFEAR 1148
Query: 706 QDK--SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNL 751
+ K ++ E T+ E K + L RD +G + ++ + + L
Sbjct: 1149 KPKEPAILAEHSGTVSFGKETKGKRRLIITRD-SGDTYEEMIPKHRQL 1195
Score = 39 (18.8 bits), Expect = 5.3e-34, Sum P(9) = 5.3e-34
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 206 VERKQTLTAERVLGVLKRISDEDCQLLG 233
+ER Q LT E L L+ DE +G
Sbjct: 154 LERGQMLTEEEYLDRLEEWGDEFTAKMG 181
Score = 38 (18.4 bits), Expect = 2.4e-12, Sum P(7) = 2.4e-12
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 230 QLLGLNPKYARPDWMILQ 247
QL G+ ARPD I++
Sbjct: 739 QLAGMRGLMARPDGSIIE 756
>TIGR_CMR|VC_0329 [details] [associations]
symbol:VC_0329 "DNA-directed RNA polymerase, beta' subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G82336
RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 203 (76.5 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 62/206 (30%), Positives = 95/206 (46%)
Query: 182 GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
G + I + A + EQ+ E ++ + T + L KR+ + + N +P
Sbjct: 181 GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKL--TKRLKLVEAFVASGN----KP 234
Query: 242 DWMILQVLXXX----------XXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
+WMIL VL + DL +I N L+R AP I+
Sbjct: 235 EWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRN 294
Query: 292 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
++LQ + DN G+ T + RP+KS+ +K K+GR R NL+GKRVD+S R+
Sbjct: 295 EKRMLQESVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRS 353
Query: 352 VITPDPTINIDQLGVPWSIALNLTYP 377
VIT P + + Q G+P +AL L P
Sbjct: 354 VITVGPYLRLHQCGLPKKMALELFKP 379
Score = 174 (66.3 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 37/95 (38%), Positives = 55/95 (57%)
Query: 445 VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 504
VL NR P+LH++ I ++ +L+ V + YNADFDGD+M +HVP + E + E
Sbjct: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
Query: 505 LELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 539
LMM I+SP S P++ QD +LG +T+
Sbjct: 481 RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTR 515
Score = 124 (48.7 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 51/196 (26%), Positives = 88/196 (44%)
Query: 671 SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
S+GI D + A I ++A+ V+ + +Q Q + T E + NKV +
Sbjct: 638 SVGIDDMVVPAAKYTEI----AEAEEEVREIQEQFQSGLV------TAGERY-NKVIDIW 686
Query: 731 NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
+ D + ++LS + + SF +I M + + R G R
Sbjct: 687 ASTNDRVAKAMMENLSSEQVINRQGEQEKQESFNSIYMMADSGARGSAAQIRQLAGM--R 744
Query: 791 TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
L + D G + ++ GL ++F G R+GL DTA+KT+ +GY+ RRLV
Sbjct: 745 GL--MARPD-GSIIETPITANFKEGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLV 801
Query: 851 KAMEDIMV-KYD-GTV 864
+D++V ++D GT+
Sbjct: 802 DVAQDVVVTEHDCGTL 817
Score = 122 (48.0 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 31/84 (36%), Positives = 45/84 (53%)
Query: 1352 YRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPI 1411
+ L+ IT+ + + SF+ET +L +AAV + D LRG+ EN+++G+L P
Sbjct: 1301 FERELLGITKASLATESF--ISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPA 1358
Query: 1412 GTGDCSLYLNDEMLKNAIELQLPS 1435
GTG Y D K A E Q PS
Sbjct: 1359 GTGFA--YHQDRQAKRAQEQQGPS 1380
Score = 110 (43.8 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 20/35 (57%), Positives = 26/35 (74%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
LV GE +G +AAQSIGEP TQ+T+ TFH G ++
Sbjct: 908 LVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAS 942
Score = 69 (29.3 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 62 RKMKCETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLS 100
R + CE C + + GH+ELA P+ HI F+K++ S
Sbjct: 81 RGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSLPS 122
Score = 55 (24.4 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 1296 DVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1350
DV A S H +I+ + GI AV + +E++ V G +N +H+ + M
Sbjct: 1207 DVIADGPESPH--DILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQM 1259
Score = 53 (23.7 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRL-GTI-DRKMKC 66
++ G+ SPD IR S +++ ET KP+ GL R+ G + D + C
Sbjct: 20 IKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72
Score = 46 (21.3 bits), Expect = 1.4e-50, Sum P(9) = 1.4e-50
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 1101 KNVTLGVPRLREIINVAKKIKTPSL 1125
K++T G+PR+ ++ A+K K P++
Sbjct: 1132 KDITGGLPRVADLFE-ARKPKEPAI 1155
Score = 44 (20.5 bits), Expect = 4.3e-35, Sum P(7) = 4.3e-35
Identities = 23/108 (21%), Positives = 45/108 (41%)
Query: 646 GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
G D ++ + +VN L + + +GDT+A N I+ V +L +
Sbjct: 1092 GTDMPAQYFLPGKAIVN---LDDGAEVNVGDTLARIPQKSGGNKDITGGLPRVADLFEAR 1148
Query: 706 QDK--SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNL 751
+ K ++ E T+ E K + L RD +G + ++ + + L
Sbjct: 1149 KPKEPAILAEHSGTVSFGKETKGKRRLIITRD-SGDTYEEMIPKHRQL 1195
Score = 39 (18.8 bits), Expect = 5.3e-34, Sum P(9) = 5.3e-34
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 206 VERKQTLTAERVLGVLKRISDEDCQLLG 233
+ER Q LT E L L+ DE +G
Sbjct: 154 LERGQMLTEEEYLDRLEEWGDEFTAKMG 181
Score = 38 (18.4 bits), Expect = 2.4e-12, Sum P(7) = 2.4e-12
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 230 QLLGLNPKYARPDWMILQ 247
QL G+ ARPD I++
Sbjct: 739 QLAGMRGLMARPDGSIIE 756
>TIGR_CMR|SO_0225 [details] [associations]
symbol:SO_0225 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_715865.1 ProteinModelPortal:Q8EK73
SMR:Q8EK73 PRIDE:Q8EK73 GeneID:1168108 KEGG:son:SO_0225
PATRIC:23520143 Uniprot:Q8EK73
Length = 1405
Score = 205 (77.2 bits), Expect = 2.5e-49, Sum P(10) = 2.5e-49
Identities = 52/148 (35%), Positives = 75/148 (50%)
Query: 240 RPDWMILQVLXXX----------XXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
+P+WMIL+VL + DL +I N L+R AP I+
Sbjct: 233 KPEWMILKVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV 292
Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
++LQ + DN G+ T + RP+KS+ +K K+GR R NL+GKRVD+S
Sbjct: 293 RNEKRMLQESVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351
Query: 350 RTVITPDPTINIDQLGVPWSIALNLTYP 377
R+VIT PT+ + Q G+P +AL L P
Sbjct: 352 RSVITVGPTLRLHQCGLPKKMALELFKP 379
Score = 170 (64.9 bits), Expect = 2.5e-49, Sum P(10) = 2.5e-49
Identities = 35/89 (39%), Positives = 52/89 (58%)
Query: 445 VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 504
V+ NR P+LH++ I ++ +L+ V + YNADFDGD+M +HVP + E + E
Sbjct: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
Query: 505 LELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
LMM I+SP + PV+ QD +LG
Sbjct: 481 RALMMSTNNILSPANGEPVITPSQDVVLG 509
Score = 124 (48.7 bits), Expect = 2.5e-49, Sum P(10) = 2.5e-49
Identities = 59/242 (24%), Positives = 101/242 (41%)
Query: 621 LSGTLCKKTLGTSTGS-LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 679
LS L + +G S L++ + ++G F + + + S+GI D +
Sbjct: 587 LSFDLVNQNMGKKQISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDMVI 646
Query: 680 DAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGS 739
A+ + D A+ V + +Q Q + T E + NKV + +A ++
Sbjct: 647 PAEKYTLVAD----AEAEVLEIQEQFQSGLV------TAGERY-NKVIDIWASANEKVSK 695
Query: 740 SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDD 799
+ ++LS + + SF +I M + + R G R L K D
Sbjct: 696 AMMENLSTETVINRDGVEEKQASFNSIYMMADSGARGSAAQIRQLAGM--RGL--MAKPD 751
Query: 800 YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
V N + GL ++F G R+GL DTA+KT+ +GY+ RRLV +D++V
Sbjct: 752 GSIIETPIVAN-FREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVI 810
Query: 860 YD 861
D
Sbjct: 811 ED 812
Score = 116 (45.9 bits), Expect = 2.5e-49, Sum P(10) = 2.5e-49
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 1351 TYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAP 1410
T+ L+ IT+ + + SF+ET +L +AAV +SD LRG+ EN+++G+L P
Sbjct: 1301 TFERELLGITKASLATESF--ISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIP 1358
Query: 1411 IGTG 1414
GTG
Sbjct: 1359 AGTG 1362
Score = 110 (43.8 bits), Expect = 2.5e-49, Sum P(10) = 2.5e-49
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1101
++ GE IG VAAQSIGEP TQ+T+ TFH G +++
Sbjct: 908 IINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASR 943
Score = 68 (29.0 bits), Expect = 2.5e-49, Sum P(10) = 2.5e-49
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 62 RKMKCETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLS 100
R + CE C + + GH+ELA P+ HI F+K++ S
Sbjct: 81 RGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSLPS 122
Score = 51 (23.0 bits), Expect = 2.5e-49, Sum P(10) = 2.5e-49
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1350
+I+ + GI V +++E++ V G +N +H+ ++ M
Sbjct: 1219 DILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM 1260
Score = 51 (23.0 bits), Expect = 2.5e-49, Sum P(10) = 2.5e-49
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRL-GTI-DRKMKC 66
++ G+ SPD IR S +++ ET KP+ GL R+ G + D + C
Sbjct: 20 IKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCARIFGPVKDYECLC 72
Score = 46 (21.3 bits), Expect = 2.5e-49, Sum P(10) = 2.5e-49
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKE 1138
+++T G+PR+ ++ A+K K P++ + ++ KE
Sbjct: 1132 RDITGGLPRVADLFE-ARKPKEPAILAEISGTISFGKE 1168
Score = 42 (19.8 bits), Expect = 2.5e-49, Sum P(10) = 2.5e-49
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 206 VERKQTLTAERVLGVLKRISDE 227
+ER Q LT E L L+ DE
Sbjct: 154 LERGQMLTEETYLDALEEYGDE 175
Score = 41 (19.5 bits), Expect = 1.1e-40, Sum P(8) = 1.1e-40
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 1266 DDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDA------RRTTSNHLIEIIEVLGIEAV 1319
D+ + K+E + + E+ +R V + C D R H+I E +G+ A
Sbjct: 865 DEAWCDKLEEHSIDEVIVRSV----ITCDTDFGVCAACYGRDLARGHIINHGEAIGVVAA 920
Query: 1320 R 1320
+
Sbjct: 921 Q 921
Score = 40 (19.1 bits), Expect = 2.2e-32, Sum P(9) = 2.2e-32
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 126 KIRNPKNRLKKILD 139
++ N NRLK++LD
Sbjct: 271 RVINRNNRLKRLLD 284
>TIGR_CMR|ECH_0951 [details] [associations]
symbol:ECH_0951 "DNA-directed RNA polymerase, beta'
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_507739.1 ProteinModelPortal:Q2GFP4
STRING:Q2GFP4 PRIDE:Q2GFP4 GeneID:3927754 KEGG:ech:ECH_0951
PATRIC:20577284 BioCyc:ECHA205920:GJNR-954-MONOMER Uniprot:Q2GFP4
Length = 1410
Score = 173 (66.0 bits), Expect = 8.9e-49, Sum P(9) = 8.9e-49
Identities = 36/103 (34%), Positives = 59/103 (57%)
Query: 445 VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 504
+L NR P+LH++ I ++ +L+ V S +NADFDGD+M +H+P S E + E
Sbjct: 422 ILLNRAPTLHRLGIQAFDPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHIPLSLEAQLEA 481
Query: 505 LELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
LMM I+SP + +P++ +D +LG +T +D +D
Sbjct: 482 RILMMSTNNILSPSNGKPIIVPSKDIVLGIYYLTLQDQVQSED 524
Score = 173 (66.0 bits), Expect = 8.9e-49, Sum P(9) = 8.9e-49
Identities = 49/148 (33%), Positives = 67/148 (45%)
Query: 240 RPDWMILQV----------LXXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
+P+WMIL V L DL H II N L + + PA +I
Sbjct: 233 KPEWMILTVIPILPPDLRPLVSLENGRPAVSDLNHHYRTIINRNNRLGKLLKLNPPAIMI 292
Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
++LQ + FD+ S KS+ LK K+GR R NL+GKRVD+S
Sbjct: 293 RNEKRMLQEAVDALFDSTRRSYVSNKAGSVGYKKSLSDMLKGKQGRFRQNLLGKRVDYSG 352
Query: 350 RTVITPDPTINIDQLGVPWSIALNLTYP 377
R+VI P + + Q G+P +AL L P
Sbjct: 353 RSVIVVGPNLKLHQCGLPKKMALELFKP 380
Score = 119 (46.9 bits), Expect = 8.9e-49, Sum P(9) = 8.9e-49
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 810 NSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED-IMVKYDGTVRN 866
+++ GL E+F G R+GL DTA+KT+ +GY+ RRLV +D I+V+YD N
Sbjct: 757 SNFREGLNVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCIVVEYDCKTHN 814
Score = 117 (46.2 bits), Expect = 8.9e-49, Sum P(9) = 8.9e-49
Identities = 51/160 (31%), Positives = 73/160 (45%)
Query: 1046 LTREAFEWVIGEIESRFLQ--SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
LT EA + + R L +V+ GE +G +AAQS+GEP TQ+T+ TFH G + + V
Sbjct: 882 LTCEAKKGICALCYGRDLAIGDVVSIGEAVGVIAAQSVGEPGTQLTMRTFHVGGTAMRGV 941
Query: 1104 -TLGVPRLRE----IIN---VAKK-----IKTPSLSVFLKPGVNSTKERAKNVQCALEYT 1150
T + L + ++N V K + + S V L V + K R A Y
Sbjct: 942 ETSNLIALLDAKVKLVNSNIVEDKHGNKIVMSRSCEVVLLDSVGNEKMRHNVPYGARLYV 1001
Query: 1151 T---LRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1187
L +TE W DP M II E +K Y ++ D
Sbjct: 1002 DDGQLVKITEKIAEW-DPYTM-PIITEKTGIIK-YMDLID 1038
Score = 107 (42.7 bits), Expect = 8.9e-49, Sum P(9) = 8.9e-49
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 1352 YRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPI 1411
Y L ITR ++ N + SF+ET +L +AA + D L G+ EN+++G+L P
Sbjct: 1298 YAPILQGITRASLDTNSF--VSAASFQETTKVLTEAAFSGKEDSLYGLKENVIVGRLIPA 1355
Query: 1412 GTG 1414
GTG
Sbjct: 1356 GTG 1358
Score = 72 (30.4 bits), Expect = 8.9e-49, Sum P(9) = 8.9e-49
Identities = 42/163 (25%), Positives = 64/163 (39%)
Query: 636 SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA-DAKTMETINDTISKA 694
S++ +++ G +F L + Q+ S G D I D KTM N A
Sbjct: 608 SIVDLVYRSCGQSETVEFSDKLMSLGFKYASQSGISFGCKDMIIPDTKTMHVDN-----A 662
Query: 695 KNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLS----ES-- 748
+K Q QD + T E + NKV + D K++S ES
Sbjct: 663 SEKIKEFAVQYQDGLI------TRSERY-NKVIDEWSKCTDLIAKDMMKAISVYDVESKL 715
Query: 749 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
N++ M +G++GS SQM G + + K P G + T
Sbjct: 716 NSIYMMAHSGARGS---ASQMKQLAGMRGLMAK--PSGEIIET 753
Score = 66 (28.3 bits), Expect = 8.9e-49, Sum P(9) = 8.9e-49
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1350
+I+ VLG+EA+ ++ E++ V G ++ +H+ I+ M
Sbjct: 1215 DILRVLGVEALANYMISEIQQVYRLQGVRIDNKHIEIILRQM 1256
Score = 62 (26.9 bits), Expect = 8.9e-49, Sum P(9) = 8.9e-49
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 62 RKMKCETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLS 100
R + CE C + GH+EL P+ H+ F+K++ S
Sbjct: 80 RGVVCEKCGVEVTSSKVRRERMGHIELVSPVAHVWFLKSLPS 121
Score = 52 (23.4 bits), Expect = 8.9e-49, Sum P(9) = 8.9e-49
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 22 ILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRL-GTI-DRKMKC 66
I SP+ IR MS +I+ TT K + GGL P++ G + D + C
Sbjct: 23 IASPESIRAMSYGEIKDISTTNYRTFKVEKGGLFCPKIFGPVNDDECLC 71
Score = 43 (20.2 bits), Expect = 7.7e-36, Sum P(9) = 7.7e-36
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 124 ALKIRNPKNRLKKILDACKNKTK 146
A+ IRN K L++ +DA + T+
Sbjct: 289 AIMIRNEKRMLQEAVDALFDSTR 311
>TIGR_CMR|SPO_3507 [details] [associations]
symbol:SPO_3507 "DNA-directed RNA polymerase, beta'
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_168702.1 ProteinModelPortal:Q5LMQ6
SMR:Q5LMQ6 PRIDE:Q5LMQ6 GeneID:3196349 KEGG:sil:SPO3507
PATRIC:23380483 Uniprot:Q5LMQ6
Length = 1413
Score = 206 (77.6 bits), Expect = 3.0e-48, Sum P(9) = 3.0e-48
Identities = 66/207 (31%), Positives = 96/207 (46%)
Query: 182 GMKMIAEYKAQRKKNDDQEQL-PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
G + I E +Q + EQL + E L ++++ KR+ + L N R
Sbjct: 184 GAEAIREMLSQIDLEAEAEQLRADLAEATGELKPKKII---KRLKVVESFLESGN----R 236
Query: 241 PDWMILQV----------LXXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
P+WM+L V L + DL +I N L+R AP I+
Sbjct: 237 PEWMVLTVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVR 296
Query: 291 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
++LQ + FDN G+ T + RP+KS+ LK K+GR R NL+GKRVDFS R
Sbjct: 297 NEKRMLQESVDALFDNGRRGRV-ITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGR 355
Query: 351 TVITPDPTINIDQLGVPWSIALNLTYP 377
+VI P + + Q G+P +AL L P
Sbjct: 356 SVIVTGPELKLHQCGLPKKMALELFKP 382
Score = 174 (66.3 bits), Expect = 3.0e-48, Sum P(9) = 3.0e-48
Identities = 40/110 (36%), Positives = 63/110 (57%)
Query: 445 VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 504
VL NR P+LH++ I ++ +L+ V S +NADFDGD+M +HVP S E + E
Sbjct: 424 VLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEA 483
Query: 505 LELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKIT-KRDTFI-EKDVFMNI 552
LMM ++SP + P++ QD +LG +T +R+ + E +F +I
Sbjct: 484 RVLMMSTNNVLSPANGAPIIVPSQDMILGLYYLTLEREGMVGEGKIFGSI 533
Score = 117 (46.2 bits), Expect = 3.0e-48, Sum P(9) = 3.0e-48
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 810 NSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK-YD-GTVR 865
+++ GLT E+F G R+GL DTA+KT+ +GY+ RRLV +D +V+ +D GT R
Sbjct: 758 SNFKEGLTVLEYFNSTHGARKGLSDTALKTANSGYLTRRLVDVAQDCIVREHDCGTDR 815
Score = 116 (45.9 bits), Expect = 3.0e-48, Sum P(9) = 3.0e-48
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 1046 LTREAFEWVIGEIESRFLQ--SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1099
LT E+ E V R L ++V GE +G +AAQSIGEP TQ+T+ TFH GV+
Sbjct: 883 LTCESEEGVCAMCYGRDLARGTMVNQGEAVGIIAAQSIGEPGTQLTMRTFHIGGVA 938
Score = 97 (39.2 bits), Expect = 3.0e-48, Sum P(9) = 3.0e-48
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 1356 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
L+ IT+ + + SF+ET +L +A+V + D L G+ EN+++G+L P GTG
Sbjct: 1301 LLGITKASLQTRSF--ISAASFQETTRVLTEASVQGKKDKLVGLKENVIVGRLIPAGTG 1357
Score = 65 (27.9 bits), Expect = 3.0e-48, Sum P(9) = 3.0e-48
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1350
+I+ +LG+EA+ ++ E++ V G +N +H+ ++ M
Sbjct: 1214 DILSILGVEALANYMVKEVQEVYRLQGVKINDKHIEVIVRQM 1255
Score = 61 (26.5 bits), Expect = 3.0e-48, Sum P(9) = 3.0e-48
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 62 RKMKCETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLS 100
R + CE C + GH+ELA P+ HI F+K++ S
Sbjct: 83 RGVVCEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPS 124
Score = 50 (22.7 bits), Expect = 3.0e-48, Sum P(9) = 3.0e-48
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 3 TRFPYSPAEVAKV-RMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRL-G 58
T P++P KV ++ + SP+ I S +I+ ET KP+ GL R+ G
Sbjct: 6 TNNPFNPLTPPKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFCARIFG 65
Query: 59 TI-DRKMKC 66
I D + C
Sbjct: 66 PIKDYECLC 74
Score = 47 (21.6 bits), Expect = 3.0e-48, Sum P(9) = 3.0e-48
Identities = 27/130 (20%), Positives = 59/130 (45%)
Query: 667 QNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL-EPEPGRTMMESFENK 725
+ AF GI D + + + ++ VK+ +Q D + + E +++++ +K
Sbjct: 631 REAFKAGISFGKDDMVIPDDKWGIVDETRDQVKDFEQQYMDGLITQGEKYNKVVDAW-SK 689
Query: 726 VNQVLNTARDEAGSSAQK----SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
N + A S+ ++ ++ E N++ M +G++GS ++QM G + + K
Sbjct: 690 CNDRVTEAMMSTISADKRDENGAVMEPNSVYMMAHSGARGS---VTQMKQLGGMRGLMAK 746
Query: 782 RIPFGFVDRT 791
P G + T
Sbjct: 747 --PNGDIIET 754
Score = 46 (21.3 bits), Expect = 2.4e-46, Sum P(9) = 2.4e-46
Identities = 30/116 (25%), Positives = 52/116 (44%)
Query: 1097 GVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVT 1156
G K++T G+PR+ E+ A++ K ++ + V ++ + ++E +
Sbjct: 1122 GAKTKDITGGLPRVAELFE-ARRPKDHAIIAEIDGYVRFGRDYKNKRRISIEPSN----- 1175
Query: 1157 EATEVWYDPDPMGTIIE-EDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMV 1210
EA E P G I ++ +FV K Y M D + AP I +L +E MV
Sbjct: 1176 EAMEPVEYMVPKGKHIPVQEGDFVQKGDYIM-DGNPAPHDILS-ILGVEALANYMV 1229
Score = 46 (21.3 bits), Expect = 1.2e-40, Sum P(8) = 1.2e-40
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 1381 VDILLDAAVFAESDYLRGVTENIMLG-QLAPIGT 1413
VD++ AV E+D G+T+ I++ + AP G+
Sbjct: 1034 VDLVSGIAVRDETDEATGMTQKIVIDWRAAPKGS 1067
Score = 40 (19.1 bits), Expect = 1.7e-28, Sum P(7) = 1.7e-28
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 57 LGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRS 104
L ID + + E A++AE G EL KP I +K V S + S
Sbjct: 192 LSQIDLEAEAEQLRADLAEATG-----EL-KPKKIIKRLKVVESFLES 233
>TIGR_CMR|CPS_4768 [details] [associations]
symbol:CPS_4768 "DNA-directed RNA polymerase, beta'
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_271412.1 ProteinModelPortal:Q47UW0
SMR:Q47UW0 STRING:Q47UW0 PRIDE:Q47UW0 GeneID:3519900
KEGG:cps:CPS_4768 PATRIC:21472353
BioCyc:CPSY167879:GI48-4774-MONOMER Uniprot:Q47UW0
Length = 1406
Score = 199 (75.1 bits), Expect = 3.3e-48, Sum P(9) = 3.3e-48
Identities = 51/148 (34%), Positives = 74/148 (50%)
Query: 240 RPDWMILQVLXXX----------XXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
+P+WMI+ VL + DL +I N L+R AP I+
Sbjct: 233 KPEWMIMNVLPILPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLVAPDIIV 292
Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
++LQ + DN G+ T + RP+KS+ +K K+GR R NL+GKRVD+S
Sbjct: 293 RNEKRMLQESVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351
Query: 350 RTVITPDPTINIDQLGVPWSIALNLTYP 377
R+VIT PT+ + Q G+P +AL L P
Sbjct: 352 RSVITVGPTLKLHQCGLPKKMALELFKP 379
Score = 167 (63.8 bits), Expect = 3.3e-48, Sum P(9) = 3.3e-48
Identities = 33/95 (34%), Positives = 54/95 (56%)
Query: 445 VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 504
V+ NR P+LH++ I ++ L+ V + YNADFDGD+M +HVP + E + E
Sbjct: 421 VMLNRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVHVPLTIEAQMEA 480
Query: 505 LELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 539
LMM +++P + P++ QD +LG +T+
Sbjct: 481 RTLMMSTNNVLAPANGEPIIVPSQDVVLGLYYLTR 515
Score = 134 (52.2 bits), Expect = 3.3e-48, Sum P(9) = 3.3e-48
Identities = 68/260 (26%), Positives = 114/260 (43%)
Query: 625 LCKKTLGTSTGS-LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKT 683
L K LG S LI+ + +G F + ++ + S+GI D +
Sbjct: 591 LIDKPLGKKPISKLINHAYRNLGLKETVMFADQIMYTGFHYAMIAGCSVGIDDMVIPEAK 650
Query: 684 METINDTISKAKNNVKNLIKQAQ-DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQ 742
+ D S+A+ V + QAQ D+ L T E + NKV + ++A ++ +
Sbjct: 651 YTIVED--SEAE--VAEI--QAQFDQGLV-----TAGEKY-NKVIDIWSSANEKVSKAMM 698
Query: 743 KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGP 802
+LS+ + + SF +I M + + R G R L K D G
Sbjct: 699 DNLSKEMVMNRDGEMEEQDSFNSIFMMADSGARGSAAQIRQLAGM--RGL--MAKPD-GS 753
Query: 803 ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK--- 859
++ ++ GLT ++F G R+GL DTA+KT+ +GY+ RRLV +D++V
Sbjct: 754 IIETPIKANFREGLTVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTNHD 813
Query: 860 ---YDGTVRNSL---GDVIQ 873
+DG + L GDV++
Sbjct: 814 CGTHDGLLMTPLIEGGDVVE 833
Score = 111 (44.1 bits), Expect = 3.3e-48, Sum P(9) = 3.3e-48
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1101
++ GE IG VAAQSIGEP TQ+T+ TFH G +++
Sbjct: 908 MINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASR 943
Score = 111 (44.1 bits), Expect = 3.3e-48, Sum P(9) = 3.3e-48
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 1352 YRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPI 1411
Y +M IT+ + + SF+ET +L +AAV + D LRG+ EN+++G+L P
Sbjct: 1301 YEMQMMGITKASLATESF--ISAASFQETTRVLTEAAVAGKKDGLRGLKENVIVGRLIPA 1358
Query: 1412 GTG 1414
GTG
Sbjct: 1359 GTG 1361
Score = 64 (27.6 bits), Expect = 3.3e-48, Sum P(9) = 3.3e-48
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 62 RKMKCETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLS 100
R + CE C + GH+ELA P+ HI F+K++ S
Sbjct: 81 RGVICEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLKSLPS 122
Score = 51 (23.0 bits), Expect = 3.3e-48, Sum P(9) = 3.3e-48
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1350
+I+ + G+ V +++E++ V G +N +H+ ++ M
Sbjct: 1218 DILRLRGVAPVANYIVNEVQEVYRLQGVKINDKHIEVIVRQM 1259
Score = 51 (23.0 bits), Expect = 3.3e-48, Sum P(9) = 3.3e-48
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRL-GTI-DRKMKC 66
++ G+ SPD +R S +++ ET KP+ GL R+ G + D + C
Sbjct: 20 IRIGLASPDLVRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72
Score = 46 (21.3 bits), Expect = 1.0e-41, Sum P(9) = 1.0e-41
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 1096 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGV 1133
A +++T G+PR+ ++ A+K K P++ + K GV
Sbjct: 1127 ASSKTRDITGGLPRVADLFE-ARKPKLPAI-LAEKTGV 1162
Score = 46 (21.3 bits), Expect = 2.0e-39, Sum P(9) = 2.0e-39
Identities = 33/147 (22%), Positives = 58/147 (39%)
Query: 931 KELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRR-PSD 989
KE+ + V +L A TE + D W L+ ++V P+ P D
Sbjct: 531 KEVEKAYRTGVAELHARIKVRITEHVKNADGEWEPVTKLRDTTVGRAIMWQVCPKGLPYD 590
Query: 990 MHPMEV-VEAVDKL-QERLKVVPGEDPLSVEAQKNATLFFNILLR--STFASKRVLKEHR 1045
+ + + + KL + + ++ + Q T F ++ S V+ E +
Sbjct: 591 LIDKPLGKKPISKLINHAYRNLGLKETVMFADQIMYTGFHYAMIAGCSVGIDDMVIPEAK 650
Query: 1046 LTR-EAFEWVIGEIESRFLQSLVAPGE 1071
T E E + EI+++F Q LV GE
Sbjct: 651 YTIVEDSEAEVAEIQAQFDQGLVTAGE 677
Score = 45 (20.9 bits), Expect = 3.3e-48, Sum P(9) = 3.3e-48
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 206 VERKQTLTAERVLGVLKRISDEDCQLLG 233
+E+ Q LT E L L+ DE L+G
Sbjct: 154 LEKSQILTEEEYLDALEEHGDEFDALMG 181
Score = 40 (19.1 bits), Expect = 1.2e-31, Sum P(8) = 1.2e-31
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 126 KIRNPKNRLKKILD 139
++ N NRLK++LD
Sbjct: 271 RVINRNNRLKRLLD 284
Score = 37 (18.1 bits), Expect = 5.7e-26, Sum P(8) = 5.7e-26
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 1044 HRLTREAFEWVIGEIESRFLQSLV 1067
HRL +AFE V+ E ++ L LV
Sbjct: 430 HRLGIQAFEPVLIEGKAIHLHPLV 453
>TIGR_CMR|NSE_0677 [details] [associations]
symbol:NSE_0677 "DNA-directed RNA polymerase, beta'
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 TIGRFAMs:TIGR02386 OMA:VIAEWDP
RefSeq:YP_506555.1 ProteinModelPortal:Q2GD91 SMR:Q2GD91
STRING:Q2GD91 PRIDE:Q2GD91 GeneID:3931848 KEGG:nse:NSE_0677
PATRIC:22681373 BioCyc:NSEN222891:GHFU-691-MONOMER Uniprot:Q2GD91
Length = 1375
Score = 182 (69.1 bits), Expect = 4.6e-48, Sum P(9) = 4.6e-48
Identities = 63/197 (31%), Positives = 91/197 (46%)
Query: 184 KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
KM + ++Q + + + + + K E+ LG R D ++ + P PD
Sbjct: 197 KMAVKLRSQAAATNSEVKKKKII--KTLRLVEQFLGSDSRPVDMILDVIPVMP----PD- 249
Query: 244 MILQVLXXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
L+ L + DL +I N L+ AP II+ ++LQ +
Sbjct: 250 --LRPLVMLDGGRFATSDLNALYRSVINRNNRLKSLIYLKAPNIIINNERRMLQEAVDAL 307
Query: 304 FDNELPGQPRATQRSG---RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTIN 360
FDN G+ RA G RP KSI LK K+GR R NL+GKRVD+S R+VI P +
Sbjct: 308 FDN---GR-RAKVIKGSNKRPYKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPALE 363
Query: 361 IDQLGVPWSIALNLTYP 377
+ Q G+P IAL L P
Sbjct: 364 LHQCGLPKKIALELFKP 380
Score = 163 (62.4 bits), Expect = 4.6e-48, Sum P(9) = 4.6e-48
Identities = 31/89 (34%), Positives = 55/89 (61%)
Query: 445 VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 504
V NR P+LH++S+ ++ +L+ V + +NADFDGD+M++HVP S E + E
Sbjct: 422 VFLNRAPTLHRLSVQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMSVHVPLSIEAQVEA 481
Query: 505 LELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
L+M +++P ++RP++ +D +LG
Sbjct: 482 RLLVMSTNNVLNPANSRPIIVPSKDIVLG 510
Score = 125 (49.1 bits), Expect = 4.6e-48, Sum P(9) = 4.6e-48
Identities = 36/122 (29%), Positives = 61/122 (50%)
Query: 984 PRRPSDMHPMEVVEAVDKLQERLKVVPGE--DPLSVEAQKNATLFFNILLRSTFASKRVL 1041
P S + + +D + V GE D S+E ++ + ++ +RS K
Sbjct: 817 PLSDSIFSRVSATDIIDPSDGSVIVRAGEMFDDKSIERIESLGID-SVRIRSVLTCK--- 872
Query: 1042 KEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1101
+H + R+ + ++ +R LVA GE +G +AAQS+GEP TQ+T+ TFH G + +
Sbjct: 873 SKHGICRKCYG---ADLSNR---KLVALGEAVGVIAAQSVGEPGTQLTMRTFHVGGAATR 926
Query: 1102 NV 1103
V
Sbjct: 927 RV 928
Score = 109 (43.4 bits), Expect = 4.6e-48, Sum P(9) = 4.6e-48
Identities = 24/59 (40%), Positives = 35/59 (59%)
Query: 1356 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
L+ ITR + + SF+ET +L +AAV + D LRG+ ENI+ G+L P+G G
Sbjct: 1289 LLGITRASLQTESF--ISAASFQETTKVLTEAAVAGKVDRLRGLKENIIAGRLLPVGAG 1345
Score = 102 (41.0 bits), Expect = 4.6e-48, Sum P(9) = 4.6e-48
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 820 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED-IMVKYDGTVRNSL 868
E+F G R+GL DTA+KT+ +GY+ RRLV +D I+V+ D N L
Sbjct: 754 EYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDSIIVEEDCGSSNGL 803
Score = 72 (30.4 bits), Expect = 4.6e-48, Sum P(9) = 4.6e-48
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 1307 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1350
L EI+ VLG+EA+ ++ E++ V G +N +H+ ++ M
Sbjct: 1200 LHEILRVLGLEALAEYMISEIQRVYRLQGVKINNKHIEVIIRKM 1243
Score = 72 (30.4 bits), Expect = 4.6e-48, Sum P(9) = 4.6e-48
Identities = 31/151 (20%), Positives = 65/151 (43%)
Query: 636 SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAK 695
+L+ ++++ G +F L + + S G D + T ++ + +A
Sbjct: 595 NLVDLVYKTCGHGKTVEFADGIMELGFRYATLSGISFGKDDMVVPP----TKSEHVRRAN 650
Query: 696 NNVKNLIKQAQDKSL-EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAM 754
VK Q Q+ + + E ++++++ + V D G S +S++E N++ M
Sbjct: 651 EEVKEYEFQYQEGLITKHEKYNKVVDAWQKCTDLVAKDMMD--GISGYESVAEMNSIFMM 708
Query: 755 VTAGSKGSFINISQMTACVG-QQNVEGKRIP 784
+G++GS I Q+ G G+ IP
Sbjct: 709 AQSGARGSAAQIKQLAGMRGLMAKPSGEIIP 739
Score = 64 (27.6 bits), Expect = 4.6e-48, Sum P(9) = 4.6e-48
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 66 CETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLS 100
CE C + GH+ELA P+ HI F+K++ S
Sbjct: 85 CERCGVEVTSSRVRRERMGHIELASPVAHIWFLKSLPS 122
Score = 44 (20.5 bits), Expect = 2.9e-45, Sum P(9) = 2.9e-45
Identities = 24/115 (20%), Positives = 54/115 (46%)
Query: 1099 SAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEA 1158
+ +++T G+PR+ E+ A+K K ++ + V K+ K+ + + +RS +
Sbjct: 1111 TTRDITGGLPRVIELFE-ARKAKVNAVISEIDGYVEFAKDYYKSKRKVI----VRSREDK 1165
Query: 1159 TEVWYDPDPMGT-IIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDK 1212
++ P G +I + +F++ + D D +I +L +E E M+ +
Sbjct: 1166 ERIYEYLVPKGRHLIVSEGDFIRRGEPLMDGDPDLHEILR-VLGLEALAEYMISE 1219
Score = 43 (20.2 bits), Expect = 4.6e-48, Sum P(9) = 4.6e-48
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGL 52
++ + S D+IR +S ++ ET KP+ GL
Sbjct: 20 IKISLASADKIRSLSYGEVTKPETINYRTFKPEKNGL 56
Score = 41 (19.5 bits), Expect = 1.7e-36, Sum P(8) = 1.7e-36
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 1308 IEIIEVLGIEAVR-RALL 1324
IE IE LGI++VR R++L
Sbjct: 852 IERIESLGIDSVRIRSVL 869
Score = 39 (18.8 bits), Expect = 3.1e-18, Sum P(6) = 3.1e-18
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 1044 HRLTREAFEWVIGEIESRFLQ 1064
HRL+ +AFE V+ IE + +Q
Sbjct: 431 HRLSVQAFEPVL--IEGKAIQ 449
Score = 38 (18.4 bits), Expect = 8.6e-38, Sum P(8) = 8.6e-38
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGD 1415
V+IL ++ A+ Y + + LG + + GD
Sbjct: 1060 VEILDESGSVAKCQYSKDAVYLLPLGAILNVSNGD 1094
Score = 37 (18.1 bits), Expect = 4.9e-18, Sum P(6) = 4.9e-18
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 1014 PLSVEAQKNATL 1025
PLS+EAQ A L
Sbjct: 472 PLSIEAQVEARL 483
>UNIPROTKB|P0A8T7 [details] [associations]
symbol:rpoC "RNA polymerase, beta' subunit" species:83333
"Escherichia coli K-12" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005737 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351 EMBL:U00006
Gene3D:2.40.40.20 InterPro:IPR009010 PDB:3IYD PDBsum:3IYD
GO:GO:0003899 EMBL:V00339 eggNOG:COG0086 PDB:3LU0 PDBsum:3LU0
EMBL:V00340 EMBL:M38293 EMBL:M38303 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 EMBL:M38305
EMBL:M38288 PIR:A00695 RefSeq:NP_418415.1 RefSeq:YP_491473.1
PDB:2AUK PDB:2LMC PDBsum:2AUK PDBsum:2LMC ProteinModelPortal:P0A8T7
SMR:P0A8T7 DIP:DIP-35803N IntAct:P0A8T7 MINT:MINT-1220667
PhosSite:P010445 PaxDb:P0A8T7 PRIDE:P0A8T7
EnsemblBacteria:EBESCT00000001546 EnsemblBacteria:EBESCT00000001547
EnsemblBacteria:EBESCT00000001548 EnsemblBacteria:EBESCT00000018189
GeneID:12933965 GeneID:948487 KEGG:ecj:Y75_p3209 KEGG:eco:b3988
PATRIC:32123497 EchoBASE:EB0888 EcoGene:EG10895
BioCyc:EcoCyc:RPOC-MONOMER BioCyc:ECOL316407:JW3951-MONOMER
BioCyc:MetaCyc:RPOC-MONOMER EvolutionaryTrace:P0A8T7
Genevestigator:P0A8T7 Uniprot:P0A8T7
Length = 1407
Score = 199 (75.1 bits), Expect = 1.9e-47, Sum P(8) = 1.9e-47
Identities = 69/208 (33%), Positives = 98/208 (47%)
Query: 184 KMIAE-YKAQRKKND-DQE--QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
KM AE +A K D +QE QL E + + T + L KRI + + N
Sbjct: 179 KMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKL--TKRIKLLEAFVQSGN---- 232
Query: 240 RPDWMILQVLXXX----------XXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
+P+WMIL VL + DL +I N L+R AP I+
Sbjct: 233 KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIV 292
Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
++LQ + DN G+ T + RP+KS+ +K K+GR R NL+GKRVD+S
Sbjct: 293 RNEKRMLQEAVDALLDNGRRGRA-ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351
Query: 350 RTVITPDPTINIDQLGVPWSIALNLTYP 377
R+VIT P + + Q G+P +AL L P
Sbjct: 352 RSVITVGPYLRLHQCGLPKKMALELFKP 379
Score = 173 (66.0 bits), Expect = 1.9e-47, Sum P(8) = 1.9e-47
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 445 VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 504
VL NR P+LH++ I ++ +L+ V + YNADFDGD+M +HVP + E + E
Sbjct: 421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
Query: 505 LELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 539
LMM I+SP + P++ QD +LG +T+
Sbjct: 481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR 515
Score = 124 (48.7 bits), Expect = 1.9e-47, Sum P(8) = 1.9e-47
Identities = 45/158 (28%), Positives = 74/158 (46%)
Query: 1281 MALRGVNLLA-VMCHEDVDARRTTSNHLIEI-IEVLGIEAVRRALLDELRVVISFDGSYV 1338
+ LRGV+ + + +E D R + + IEV+ + +R+A + +G V
Sbjct: 1221 LRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSDFLEGEQV 1280
Query: 1339 NYRHLAILCDTM--------TYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
Y + I + TY L+ IT+ + + SF+ET +L +AAV
Sbjct: 1281 EYSRVKIANRELEANGKVGATYSRDLLGITKASLATESF--ISAASFQETTRVLTEAAVA 1338
Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNA 1428
+ D LRG+ EN+++G+L P GTG Y D M + A
Sbjct: 1339 GKRDELRGLKENVIVGRLIPAGTGYA--YHQDRMRRRA 1374
Score = 121 (47.7 bits), Expect = 1.9e-47, Sum P(8) = 1.9e-47
Identities = 52/191 (27%), Positives = 81/191 (42%)
Query: 671 SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
S+GI D + K E I S+A+ V + +Q Q + T E + NKV +
Sbjct: 638 SVGIDDMVIPEKKHEII----SEAEAEVAEIQEQFQSGLV------TAGERY-NKVIDIW 686
Query: 731 NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
A D + +L + + SF +I M + + R G R
Sbjct: 687 AAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGM--R 744
Query: 791 TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
L K D G + ++ GL ++F G R+GL DTA+KT+ +GY+ RRLV
Sbjct: 745 GL--MAKPD-GSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLV 801
Query: 851 KAMEDIMVKYD 861
+D++V D
Sbjct: 802 DVAQDLVVTED 812
Score = 110 (43.8 bits), Expect = 1.9e-47, Sum P(8) = 1.9e-47
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1101
++ GE IG +AAQSIGEP TQ+T+ TFH G +++
Sbjct: 908 IINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASR 943
Score = 66 (28.3 bits), Expect = 1.9e-47, Sum P(8) = 1.9e-47
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 62 RKMKCETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLS 100
R + CE C + + GH+ELA P HI F+K++ S
Sbjct: 81 RGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPS 122
Score = 61 (26.5 bits), Expect = 4.0e-41, Sum P(8) = 4.0e-41
Identities = 11/42 (26%), Positives = 25/42 (59%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1350
+I+ + G+ AV R +++E++ V G +N +H+ ++ M
Sbjct: 1219 DILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM 1260
Score = 51 (23.0 bits), Expect = 1.5e-33, Sum P(7) = 1.5e-33
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 1042 KEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
K+H + EA E + EI+ +F LV GE
Sbjct: 649 KKHEIISEA-EAEVAEIQEQFQSGLVTAGE 677
Score = 48 (22.0 bits), Expect = 3.6e-32, Sum P(8) = 3.6e-32
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 206 VERKQTLTAERVLGVLKRISDE 227
+ER+Q LT E+ L L+ DE
Sbjct: 154 LERQQILTEEQYLDALEEFGDE 175
Score = 47 (21.6 bits), Expect = 1.9e-47, Sum P(8) = 1.9e-47
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRL-GTI-DRKMKC 66
++ + SPD IR S +++ ET KP+ GL R+ G + D + C
Sbjct: 20 IKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLC 72
Score = 45 (20.9 bits), Expect = 1.9e-47, Sum P(8) = 1.9e-47
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKE 1138
K++T G+PR+ ++ A++ K P++ + V+ KE
Sbjct: 1132 KDITGGLPRVADLFE-ARRPKEPAILAEISGIVSFGKE 1168
Score = 40 (19.1 bits), Expect = 2.2e-31, Sum P(8) = 2.2e-31
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 126 KIRNPKNRLKKILD 139
++ N NRLK++LD
Sbjct: 271 RVINRNNRLKRLLD 284
Score = 39 (18.8 bits), Expect = 4.9e-11, Sum P(7) = 4.9e-11
Identities = 38/186 (20%), Positives = 76/186 (40%)
Query: 887 ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
E Q LD+L+ EFD E + + QE + L+ +EL + +K
Sbjct: 162 EEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQE-CEQLR--EELNETNSETKRKKLT 218
Query: 947 DRYQLATEIATSGDS-SWPLPVNLKRLIWNAQKTFKVDPRR--PSDMHPM--EVVEAVDK 1001
R +L SG+ W + L L + + +D R SD++ + V+ ++
Sbjct: 219 KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNR 278
Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
L+ RL + D + ++ + LL + + + ++ ++ +I + R
Sbjct: 279 LK-RLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGR 337
Query: 1062 FLQSLV 1067
F Q+L+
Sbjct: 338 FRQNLL 343
>TIGR_CMR|DET_0604 [details] [associations]
symbol:DET_0604 "DNA-directed RNA polymerase, beta'
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
HOGENOM:HOG000218387 RefSeq:YP_181346.1 ProteinModelPortal:Q3Z8V3
SMR:Q3Z8V3 STRING:Q3Z8V3 PRIDE:Q3Z8V3 GeneID:3230059
KEGG:det:DET0604 PATRIC:21608279 BioCyc:DETH243164:GJNF-605-MONOMER
Uniprot:Q3Z8V3
Length = 1295
Score = 180 (68.4 bits), Expect = 2.4e-47, Sum P(8) = 2.4e-47
Identities = 54/183 (29%), Positives = 84/183 (45%)
Query: 207 ERKQTLTAER-VLGVLKRISDEDCQLL-GLNPKYARPDWMILQVL----------XXXXX 254
ER + + R G ++ + + QL+ +P+WMI+ VL
Sbjct: 254 ERSKLIQETRSTSGQRRKKAGKQLQLVEAFRRSSNKPEWMIMTVLPVLPPDLRPMVQLDG 313
Query: 255 XXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRA 314
+ DL +I N L+ GAP II ++LQ + + DN G+ A
Sbjct: 314 GRFATSDLNDLYRRVINRNNRLQHLMEIGAPEIIIRNEKRMLQEAVDSLIDNGRRGKSVA 373
Query: 315 TQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNL 374
+ KS+ L+ K+GR R NL+GKRVD+S R+VI P++ + Q G+P +AL L
Sbjct: 374 VNGDHKA-KSLSDLLRGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKLSQCGLPRRMALEL 432
Query: 375 TYP 377
P
Sbjct: 433 FKP 435
Score = 170 (64.9 bits), Expect = 2.4e-47, Sum P(8) = 2.4e-47
Identities = 48/155 (30%), Positives = 77/155 (49%)
Query: 445 VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 504
V+ NR P+LH++SI ++ S RL+ V S +NADFDGD+M +HVP S E
Sbjct: 477 VMLNRAPTLHRLSIQAFEPVLIDGSALRLHPLVCSAFNADFDGDQMAVHVPLSKAAVKEA 536
Query: 505 LELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKIT--KRDTFIEKDVFMNILMWWEDFD-G 561
E M+ ++ P S PV+ D + GC +T + E +F + ++ G
Sbjct: 537 RETMLSIHNMMLPSSGEPVVSPSLDMVFGCYYLTTTRPGAKGEGKIFSDFEEAKHYYEMG 596
Query: 562 KVPQPTILKPRP-------LWTGKQVFNLIIPKQI 589
+ I+K R TG+ +FN ++PK++
Sbjct: 597 IIDLRAIIKVRDGKGNMLETTTGRIIFNDVLPKEV 631
Score = 134 (52.2 bits), Expect = 2.4e-47, Sum P(8) = 2.4e-47
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
LV +G +AAQSIGEP TQ+TL TFH GV ++T G+PR+ E+ A+ K S+
Sbjct: 934 LVDMNTAVGIIAAQSIGEPGTQLTLRTFHTGGVVGVDITTGLPRVEELFE-ARPPKVQSI 992
Score = 120 (47.3 bits), Expect = 2.4e-47, Sum P(8) = 2.4e-47
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 808 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
+++S GLT E+F G R+GL DTA++TS +GY+ RRL+ +D+++
Sbjct: 786 IKSSLREGLTTLEYFISTHGARKGLADTALRTSGSGYLTRRLIDVTQDVII 836
Score = 108 (43.1 bits), Expect = 2.4e-47, Sum P(8) = 2.4e-47
Identities = 35/114 (30%), Positives = 57/114 (50%)
Query: 1316 IEAVRRALLDELRVVISFD-----GSYVN-YRHLAILCDTMTYRG-----H--LMAITRH 1362
IE + R +L ++R+ S D G V+ +R+ I + G H LM ITR
Sbjct: 1156 IEVIARQMLIKVRIDSSGDTDLVPGELVDKFRYEDINAKVLAEGGEPATAHTVLMGITRA 1215
Query: 1363 GINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDC 1416
++ + SF+ET +L DAA++ + D L G+ EN+++G+L P C
Sbjct: 1216 SLSTESW--LAAASFQETTRVLTDAAIYGKVDKLSGLKENVIIGKLIPAQCKSC 1267
Score = 70 (29.7 bits), Expect = 1.6e-43, Sum P(8) = 1.6e-43
Identities = 12/42 (28%), Positives = 28/42 (66%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1350
+I+ +LG +AV++ L++E++ V G ++N +H+ ++ M
Sbjct: 1122 DILSILGRDAVQKYLVEEVQKVYYSQGVHINDKHIEVIARQM 1163
Score = 61 (26.5 bits), Expect = 2.4e-47, Sum P(8) = 2.4e-47
Identities = 26/118 (22%), Positives = 48/118 (40%)
Query: 674 IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL--EPEPGRTMMESFENKVNQVLN 731
+G A + + IS + K L+ A +++ E + R ++ E + N ++
Sbjct: 669 LGFKYATSSGISIAMSDISVPREKAK-LVAAADERTAISEGQFARGLITEDE-RYNSIIE 726
Query: 732 T---ARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPF 785
T D + Q + ++ M +G+KG+ I QM G N G+ I F
Sbjct: 727 TWMETTDRITDAIQAGFDKQGSVYMMANSGAKGNISQIRQMAGLRGLMTNPSGRIIDF 784
Score = 57 (25.1 bits), Expect = 2.4e-47, Sum P(8) = 2.4e-47
Identities = 23/94 (24%), Positives = 40/94 (42%)
Query: 66 CETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
C+ C +A GH+ELA P+ HI F + + S + + N S + +
Sbjct: 75 CDKCGVEIARAKVRRERMGHIELACPVGHIWFTRGIPSRV-GLLLNLSTRSLERIIYYSH 133
Query: 123 QALKIRNPKNRLKKI--LDACKNKTKCEGGDEID 154
+ N + R K I L+ ++ + G E+D
Sbjct: 134 FIITGVNDEAREKAIKDLEVISSQRVADKGSEVD 167
Score = 52 (23.4 bits), Expect = 2.4e-47, Sum P(8) = 2.4e-47
Identities = 18/59 (30%), Positives = 28/59 (47%)
Query: 11 EVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRL-GTIDRKMKC 66
EV ++ + SPD+IR S ++ ET KP+ GL R+ G I + +C
Sbjct: 3 EVNDFDAIRISLASPDQIRSWSYGEVTKPETINYRTLKPERDGLFCERIFGPI-KDFEC 60
Score = 37 (18.1 bits), Expect = 8.1e-28, Sum P(6) = 8.1e-28
Identities = 18/84 (21%), Positives = 43/84 (51%)
Query: 1095 YAGVSAKNVTLGVPRLREIINVAKKIKTPS-LSVFLKPGVNSTKERAKNVQCALEYTTLR 1153
Y +S++++ + + +++++ K T S +S+ + ++ +E+AK V A E T +
Sbjct: 651 YKILSSQDMAVMLDKIKQL---GFKYATSSGISIAMSD-ISVPREKAKLVAAADERTAIS 706
Query: 1154 SVTEATEVWYDPDPMGTIIEEDVE 1177
A + + + +IIE +E
Sbjct: 707 EGQFARGLITEDERYNSIIETWME 730
Score = 37 (18.1 bits), Expect = 2.0e-18, Sum P(6) = 2.0e-18
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 130 PKNRLKKILDAC 141
PK+ +KKI+ C
Sbjct: 639 PKSAIKKIIGRC 650
>TIGR_CMR|APH_1023 [details] [associations]
symbol:APH_1023 "DNA-directed RNA polymerase, beta'
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 RefSeq:YP_505582.1 ProteinModelPortal:Q2GJ69
STRING:Q2GJ69 PRIDE:Q2GJ69 GeneID:3930013 KEGG:aph:APH_1023
PATRIC:20950796 HOGENOM:HOG000218386 OMA:DINDKHI
ProtClustDB:PRK00566 BioCyc:APHA212042:GHPM-1030-MONOMER
TIGRFAMs:TIGR02386 Uniprot:Q2GJ69
Length = 1409
Score = 182 (69.1 bits), Expect = 1.2e-45, Sum P(9) = 1.2e-45
Identities = 50/148 (33%), Positives = 69/148 (46%)
Query: 240 RPDWMILQV----------LXXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
RP+WMIL V L DL H II N L + + PA +I
Sbjct: 233 RPEWMILTVIPVLPPDLRPLVSLENGRPAVSDLNHHYRTIINRNNRLEKLLKLNPPAIMI 292
Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
++LQ + FD+ + S KS+ LK K+GR R NL+GKRVD+S
Sbjct: 293 RNEKRMLQEAVDALFDSSRRSYVSSRVGSMGYKKSLSDMLKGKQGRFRQNLLGKRVDYSG 352
Query: 350 RTVITPDPTINIDQLGVPWSIALNLTYP 377
R+VI P++ + Q G+P +AL L P
Sbjct: 353 RSVIVVGPSLKLHQCGLPKKMALELFKP 380
Score = 166 (63.5 bits), Expect = 1.2e-45, Sum P(9) = 1.2e-45
Identities = 35/94 (37%), Positives = 55/94 (58%)
Query: 445 VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 504
+L NR P+LH++ + ++ +L+ V S +NADFDGD+M +HVP S E + E
Sbjct: 422 ILLNRAPTLHRLGLQAFDPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAQLEA 481
Query: 505 LELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKIT 538
LMM I+SP + RP++ +D +LG +T
Sbjct: 482 RVLMMSTNNILSPSNGRPIIVPSKDIVLGIYYLT 515
Score = 114 (45.2 bits), Expect = 1.2e-45, Sum P(9) = 1.2e-45
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
LV+ GE +G +AAQS+GEP TQ+T+ TFH G + + V
Sbjct: 899 LVSIGEAVGVIAAQSVGEPGTQLTMRTFHVGGTAMRGV 936
Score = 110 (43.8 bits), Expect = 1.2e-45, Sum P(9) = 1.2e-45
Identities = 24/56 (42%), Positives = 38/56 (67%)
Query: 810 NSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDI-MVKYD-GT 863
+++ GL+ E+F G R+GL DTA+KT+ +GY+ RRLV +D +V++D GT
Sbjct: 752 SNFREGLSVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCTVVEHDCGT 807
Score = 103 (41.3 bits), Expect = 1.2e-45, Sum P(9) = 1.2e-45
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 1350 MTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLA 1409
++Y L IT+ ++ N + SF+ET +L +AA + D L G+ EN+++G+L
Sbjct: 1291 VSYVPILQGITKASLDTNSF--ISAASFQETTKVLTEAAFAGKEDPLYGLKENVIVGRLI 1348
Query: 1410 PIGTG 1414
P GTG
Sbjct: 1349 PAGTG 1353
Score = 63 (27.2 bits), Expect = 1.2e-45, Sum P(9) = 1.2e-45
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 62 RKMKCETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLS 100
R + CE C + GH+EL P+ HI F+K++ S
Sbjct: 80 RGIVCEKCGVEVTSSKVRRERMGHIELVSPVAHIWFLKSLPS 121
Score = 61 (26.5 bits), Expect = 1.2e-45, Sum P(9) = 1.2e-45
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1350
+I+ VLG EA+ ++ E++ V G ++ +H+ ++ M
Sbjct: 1210 DILRVLGTEALANYMISEIQQVYRLQGVKIDNKHIEVILRQM 1251
Score = 58 (25.5 bits), Expect = 1.2e-45, Sum P(9) = 1.2e-45
Identities = 36/162 (22%), Positives = 67/162 (41%)
Query: 636 SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAK 695
S++ +++ G +F +L + Q+ S G D I I DT KA
Sbjct: 603 SIVDLVYRSCGQRETVEFSDKLMYLGFKYASQSGISFGCKDMI--------IPDT--KAA 652
Query: 696 NNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLS------ESN 749
+ V++ ++ ++ S++ + G NKV + D K++S + N
Sbjct: 653 H-VEDASEKIREFSIQYQDGLITKSERYNKVVDEWSKCTDLIARDMMKAISLCDEKGKYN 711
Query: 750 NLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
++ M +G++GS SQM G + + K P G + T
Sbjct: 712 SIYMMANSGARGS---ASQMKQLAGMRGLMAK--PSGEIIET 748
Score = 52 (23.4 bits), Expect = 1.2e-45, Sum P(9) = 1.2e-45
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 22 ILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRL-GTI-DRKMKC 66
I SP+ IR MS +I+ TT K + GGL P++ G + D + C
Sbjct: 23 IASPESIRAMSYGEIKDISTTNYRTFKVEKGGLFCPKIFGPVNDDECLC 71
Score = 40 (19.1 bits), Expect = 1.5e-43, Sum P(9) = 1.5e-43
Identities = 28/120 (23%), Positives = 55/120 (45%)
Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE 1157
+ +++T G+PR+ E+ A+K K ++ V+ E K+ + +R V +
Sbjct: 1118 IKTRDITGGLPRVIELFE-ARKPKEHAIV----SDVDGYVEFGKDYYRSKRRIFIRPVDK 1172
Query: 1158 ATEV--WYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1215
+ V + P TI+ E +FV + D D P++ +LR+ L E + + +S
Sbjct: 1173 SLPVVEYLVPKGKHTIVNEG-DFVHKGDLLMDGD--PDQHD--ILRV-LGTEALANYMIS 1226
Score = 39 (18.8 bits), Expect = 2.3e-31, Sum P(9) = 2.3e-31
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 124 ALKIRNPKNRLKKILDA 140
A+ IRN K L++ +DA
Sbjct: 289 AIMIRNEKRMLQEAVDA 305
>RGD|1305574 [details] [associations]
symbol:Polr3a "polymerase (RNA) III (DNA directed) polypeptide
A" species:10116 "Rattus norvegicus" [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=ISO] [GO:0045087 "innate immune response" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR007081
InterPro:IPR015700 Pfam:PF04998 RGD:1305574 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
eggNOG:COG0086 GO:GO:0032549 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
PANTHER:PTHR19376:SF15 IPI:IPI00766228 EMBL:BC086344
UniGene:Rn.41904 ProteinModelPortal:Q5RK26 STRING:Q5RK26
UCSC:RGD:1305574 Genevestigator:Q5RK26 Uniprot:Q5RK26
Length = 491
Score = 474 (171.9 bits), Expect = 2.9e-45, Sum P(2) = 2.9e-45
Identities = 121/382 (31%), Positives = 205/382 (53%)
Query: 1039 RVLKE-HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 1097
RVL + R+TR E + +++++ + PG +G + AQSIGEP TQMTL TFH+AG
Sbjct: 99 RVLYQLDRITRTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 158
Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE 1157
V++ N+TLGVPR++EIIN +K I TP ++ L ++ + A+ V+ +E T L ++E
Sbjct: 159 VASMNITLGVPRIKEIINASKAISTPIITAQLD--MDDDADYARLVKGRIEKTLLGEISE 216
Query: 1158 ATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMA 1217
E + PD +++ +E ++ LLR+E+N E V + +
Sbjct: 217 YIEEVFLPDDCFILVKLSLERIR------------------LLRLEVNAET-VRYSICTS 257
Query: 1218 AVAEKINQE--FDDDLTCIFNDDNA-DKLILRIRIMNDEAPKGELND--ESAEDDVFLKK 1272
+ K + + C+ +N+ + ++ + ++ PK + E + + + +
Sbjct: 258 KLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDE 317
Query: 1273 IESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
++ + G NL AVM V RTTSN+ E+ + LGIEA R +++E++ +
Sbjct: 318 QSGKEKFKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMV 377
Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
G ++ RH+ +L D MTY+G ++ ITR G+ + +M SFE+T D L DAA F +
Sbjct: 378 NHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQ 437
Query: 1393 SDYLRGVTENIMLGQLAPIGTG 1414
D + GV+E I++G IGTG
Sbjct: 438 KDSVCGVSECIIMGIPMNIGTG 459
Score = 45 (20.9 bits), Expect = 2.9e-45, Sum P(2) = 2.9e-45
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 874 FLYGEDGMDSVWIESQTLDSLKMKK 898
F+YG DG+D +E + + L+ K+
Sbjct: 1 FIYGGDGLDPAAMEGKD-EPLEFKR 24
>TIGR_CMR|CBU_0232 [details] [associations]
symbol:CBU_0232 "DNA-directed RNA polymerase beta'
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_819276.1 ProteinModelPortal:Q83ET0
SMR:Q83ET0 PRIDE:Q83ET0 GeneID:1208113 KEGG:cbu:CBU_0232
PATRIC:17929155 BioCyc:CBUR227377:GJ7S-238-MONOMER Uniprot:Q83ET0
Length = 1414
Score = 186 (70.5 bits), Expect = 4.1e-44, Sum P(7) = 4.1e-44
Identities = 66/200 (33%), Positives = 91/200 (45%)
Query: 192 QRKKND-DQEQLPEPVERK-QTLTAE-RVLGVLKRISDEDCQLLGLNPKYARPDWMILQV 248
QR D D E E + + QT T+E + + KR+ L N +P+WMIL V
Sbjct: 186 QRLLRDIDVEAEVEALRTELQTTTSETKTKKLTKRLKVLSAFLESGN----KPEWMILTV 241
Query: 249 LXXX----------XXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQF 298
L + DL +I N L+R AP I+ ++LQ
Sbjct: 242 LPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQE 301
Query: 299 HIATYFDNELPGQPRATQRSGR-PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
+ DN G RA S R +KS+ +K K GR R NL+GKRVD+S R+VI P
Sbjct: 302 AVDALLDNGRRG--RAILGSNRRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGP 359
Query: 358 TINIDQLGVPWSIALNLTYP 377
T+ + Q G+P +AL L P
Sbjct: 360 TLKLHQAGLPKKMALELFKP 379
Score = 170 (64.9 bits), Expect = 4.1e-44, Sum P(7) = 4.1e-44
Identities = 34/95 (35%), Positives = 54/95 (56%)
Query: 445 VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 504
+L NR P+LH++ I ++ +L+ V + YNADFDGD+M +HVP + E + E
Sbjct: 421 ILLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCTAYNADFDGDQMAVHVPLTLEAQLEA 480
Query: 505 LELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 539
LMM ++ P + P++ QD +LG IT+
Sbjct: 481 RSLMMSTNNVLHPANGEPIIVPSQDVVLGLYYITR 515
Score = 131 (51.2 bits), Expect = 4.1e-44, Sum P(7) = 4.1e-44
Identities = 64/275 (23%), Positives = 113/275 (41%)
Query: 601 NDKGILTAGDTLVRIEKGELLSGTLCKKTLG----------TSTGSLIHVIWEEVGPDAA 650
N+ G + D LV G +L + K L + L+ + +G
Sbjct: 558 NEAGEIEESDRLVNTAAGRILLWQIVPKGLPFALVDQPMTKKAVTKLLDFCYRNLGLKTT 617
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
F ++ ++ + SIGI D + + E I IS+A++ V+ + KQ
Sbjct: 618 VIFADKLMYMGFHYATHSGVSIGINDLVVPDQK-EAI---ISRAEDEVREIEKQYAS--- 670
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
G NKV + + D+ + + ++ A ++ SF +I M+
Sbjct: 671 ----GLVTHGERRNKVIDIWSRTNDQVAKAMMEKIAVEKVKDAEGKEVAQSSFNSIYMMS 726
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
+ + R G R L + D G + ++ GL ++F G R+
Sbjct: 727 DSGARGSAAQTRQLAGM--RGL--MARPD-GTIIETPITANFREGLNVLQYFISTHGARK 781
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMV-KYD-GT 863
GL DTA+KT+ +GY+ RRLV +D++V ++D GT
Sbjct: 782 GLADTALKTANSGYLTRRLVDVAQDLVVTEHDCGT 816
Score = 119 (46.9 bits), Expect = 4.1e-44, Sum P(7) = 4.1e-44
Identities = 43/129 (33%), Positives = 66/129 (51%)
Query: 989 DMHP-MEVVEAVDKLQER-LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKR---VLKE 1043
+M P +E + V+ L+ER L + E + +++K +L + TF +R +L+E
Sbjct: 821 EMMPHIEGGDVVEPLRERVLGRILAEPVMDPKSRKE------LLAKDTFLDERRVDILEE 874
Query: 1044 HRLTR---------EAFEWVIGEIESRFLQS--LVAPGEMIGCVAAQSIGEPATQMTLNT 1092
H + R EA + R L +V GE IG VAAQSIGEP TQ+T+ T
Sbjct: 875 HSIDRVRVRSAITCEARYGICSMCYGRDLARGHVVNVGEAIGVVAAQSIGEPGTQLTMRT 934
Query: 1093 FHYAGVSAK 1101
FH G +++
Sbjct: 935 FHIGGAASR 943
Score = 98 (39.6 bits), Expect = 4.1e-44, Sum P(7) = 4.1e-44
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
SF+ET +L A+V + D LRG+ EN+++G+L P GTG
Sbjct: 1323 SFQETTRVLTAASVAGKRDDLRGLKENVIVGRLIPAGTG 1361
Score = 67 (28.6 bits), Expect = 5.5e-41, Sum P(7) = 5.5e-41
Identities = 22/96 (22%), Positives = 45/96 (46%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHG---IN 1365
+I+ +LG+ A+ +++E++ V G +N +H+ ++ M + + IT+ G +
Sbjct: 1218 DILRLLGVNALANYIVNEVQEVYRLQGVKINDKHIEVIVRQMLRK---VKITQPGDTDLL 1274
Query: 1366 RNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTE 1401
+N+ R E I D V L G+T+
Sbjct: 1275 QNEQVERTRVREENEKIIKKDGTVAKVEPILLGITK 1310
Score = 62 (26.9 bits), Expect = 4.1e-44, Sum P(7) = 4.1e-44
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 62 RKMKCETC--TANMAECPGH-FGHLELAKPMFHIGFMKTVLS 100
R + CE C +A+ GH+ELA P+ HI ++K++ S
Sbjct: 81 RGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWYLKSLPS 122
Score = 45 (20.9 bits), Expect = 4.1e-44, Sum P(7) = 4.1e-44
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGL 52
S A+ ++ + SP+E+R S +++ ET KP+ GL
Sbjct: 10 SEKHTAEFDALRIKLASPEEVRSWSYGEVKKPETINYRTFKPEREGL 56
Score = 40 (19.1 bits), Expect = 2.3e-29, Sum P(7) = 2.3e-29
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 126 KIRNPKNRLKKILD 139
++ N NRLK++LD
Sbjct: 271 RVINRNNRLKRLLD 284
Score = 39 (18.8 bits), Expect = 2.9e-29, Sum P(7) = 2.9e-29
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 206 VERKQTLTAERVLGVLKRISDEDCQLLG 233
+E +Q L+ E L L+ D+ L+G
Sbjct: 154 LEPRQLLSEEAYLDALEEYGDDFTALMG 181
Score = 38 (18.4 bits), Expect = 4.3e-27, Sum P(6) = 4.3e-27
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 834 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 864
DT + +E ++R V+ + ++K DGTV
Sbjct: 1270 DTDLLQNEQ--VERTRVREENEKIIKKDGTV 1298
Score = 38 (18.4 bits), Expect = 1.5e-07, Sum P(6) = 1.5e-07
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 230 QLLGLNPKYARPDWMILQ 247
QL G+ ARPD I++
Sbjct: 739 QLAGMRGLMARPDGTIIE 756
Score = 37 (18.1 bits), Expect = 1.2e-34, Sum P(7) = 1.2e-34
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 846 QRRLVKAMEDIMVKYDGTV 864
Q R + M +M + DGT+
Sbjct: 736 QTRQLAGMRGLMARPDGTI 754
Score = 37 (18.1 bits), Expect = 5.4e-27, Sum P(6) = 5.4e-27
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 1042 KEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
KE ++R E + EIE ++ LV GE
Sbjct: 650 KEAIISRAEDE--VREIEKQYASGLVTHGE 677
>TIGR_CMR|CJE_0529 [details] [associations]
symbol:CJE_0529 "DNA-directed RNA polymerase, beta'
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
RefSeq:YP_178547.1 ProteinModelPortal:Q5HVY8 SMR:Q5HVY8
STRING:Q5HVY8 GeneID:3231290 KEGG:cjr:CJE0529 PATRIC:20042780
OMA:VIAEWDP BioCyc:CJEJ195099:GJC0-544-MONOMER Uniprot:Q5HVY8
Length = 1517
Score = 210 (79.0 bits), Expect = 2.1e-43, Sum P(8) = 2.1e-43
Identities = 86/334 (25%), Positives = 145/334 (43%)
Query: 64 MKCETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
+KCE C +A GH+EL P+ HI ++ ++ S + ++ + D +
Sbjct: 84 VKCEKCGVEVANSKVRRSRMGHIELVTPVAHIWYVNSLPSRIGTLL---GVKMKDLERVL 140
Query: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPG--QDGEEP-LKKNKGGCGAQQPK 177
+ +A + NP + ++ K C+ +E Q E K GG +
Sbjct: 141 YYEAYIVENPGDAFYDN-ESTKKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLL 199
Query: 178 LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGV-LKRISDEDCQLLGLNP 236
++ + ++ + K + + + + ++R + + E L L +D D + P
Sbjct: 200 ANLDLVALLNQLKEEMGATNSEAKKKTIIKRLKVV--ENFLNSNLNANTDSDEAV----P 253
Query: 237 KYARPDWMI----------LQVLXXXXXXXXXSDDLTHQLAMIIRHNENLRRQERNGAPA 286
RP+WM+ L+ L D+ +I N L++ AP
Sbjct: 254 N--RPEWMMITNLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPE 311
Query: 287 HIISEFAQLLQFHIATYFDNELPGQPRATQRSG---RPIKSICSRLKAKEGRIRGNLMGK 343
II ++LQ + FDN G+ RA G RP+KS+ +K K+GR R NL+GK
Sbjct: 312 IIIRNEKRMLQEAVDALFDN---GR-RANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGK 367
Query: 344 RVDFSARTVITPDPTINIDQLGVPWSIALNLTYP 377
RVDFS R+VI P + +DQ G+P +AL L P
Sbjct: 368 RVDFSGRSVIVVGPKLRMDQCGLPKKMALELFKP 401
Score = 165 (63.1 bits), Expect = 2.1e-43, Sum P(8) = 2.1e-43
Identities = 82/318 (25%), Positives = 142/318 (44%)
Query: 409 IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
+ + G ++ KK ++ ++ + G V+ NR P+LHK+SI ++
Sbjct: 407 LEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPTLHKLSIQAFHPVLVEG 466
Query: 469 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
+L+ V + +NADFDGD+M +HVP S E AE LM+ I+ P S + V Q
Sbjct: 467 KAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGKSVTVPSQ 526
Query: 529 DTLLGCRKIT--KRDTFIEKDVFMNI---LMWWED--FDGKVPQPTILKPRPLWT--GKQ 579
D +LG ++ K + I +M E D T++ R + T G+
Sbjct: 527 DMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDIHASIQTMVDGRKITTTAGRL 586
Query: 580 VFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKG-ELLSGTLCK-KTLG----TS 633
+ I+P + +W+ K + A V + G E+ + L + K LG T
Sbjct: 587 IIKSILP---DFVPENSWNKVLKKKDIAALVDYVYKQGGLEITASFLDRLKNLGFEYATK 643
Query: 634 TGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISK 693
G I + + + P+ +K + + V +QN++++G+ I + I D I K
Sbjct: 644 AGISISIA-DIIVPNDKQKAIDEAKKQVRE--IQNSYNLGL---ITSGERYNKIID-IWK 696
Query: 694 AKNNV--KNLIKQAQ-DK 708
+ NNV K ++K + DK
Sbjct: 697 STNNVLSKEMMKLVEKDK 714
Score = 118 (46.6 bits), Expect = 2.1e-43, Sum P(8) = 2.1e-43
Identities = 21/38 (55%), Positives = 29/38 (76%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
LV PGE +G ++AQSIGEP TQ+TL TFH G ++ ++
Sbjct: 906 LVKPGEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDL 943
Score = 113 (44.8 bits), Expect = 2.1e-43, Sum P(8) = 2.1e-43
Identities = 21/59 (35%), Positives = 37/59 (62%)
Query: 1356 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
L+ +TR I + + SF+ET +L +A++ + DYL + EN++LG++ P+GTG
Sbjct: 1448 LLGVTRAAIGSDSV--ISAASFQETTKVLTEASIAGKFDYLEDLKENVILGRMIPVGTG 1504
Score = 103 (41.3 bits), Expect = 2.1e-43, Sum P(8) = 2.1e-43
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 796 TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 855
TK D + N + GL E+F G R+GL DTA+KT+ GY+ R+L+ ++
Sbjct: 746 TKPDGSIIETPIISN-FREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKLIDVAQN 804
Query: 856 IMV 858
+ +
Sbjct: 805 VKI 807
Score = 75 (31.5 bits), Expect = 2.0e-34, Sum P(8) = 2.0e-34
Identities = 43/202 (21%), Positives = 80/202 (39%)
Query: 576 TG-KQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTST 634
TG +V + K +++ + D K TAG +++ + + K L
Sbjct: 550 TGIDEVMMALESKCLDIHASIQTMVDGRKITTTAGRLIIKSILPDFVPENSWNKVLKKKD 609
Query: 635 -GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISK 693
+L+ ++++ G + FL + L + + SI I D I + I++
Sbjct: 610 IAALVDYVYKQGGLEITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDE---- 665
Query: 694 AKNNVKNLIKQAQDKSLEPEPGR-TMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLK 752
AK V+ I+ + + L R + N VL+ E +K N++
Sbjct: 666 AKKQVRE-IQNSYNLGLITSGERYNKIIDIWKSTNNVLSK---EMMKLVEKDKEGFNSIY 721
Query: 753 AMVTAGSKGSFINISQMTACVG 774
M +G++GS ISQ+ A G
Sbjct: 722 MMADSGARGSAAQISQLAAMRG 743
Score = 56 (24.8 bits), Expect = 2.1e-43, Sum P(8) = 2.1e-43
Identities = 11/47 (23%), Positives = 28/47 (59%)
Query: 1304 SNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1350
S+H +++++LG +A+ L+ E++ V G ++ +H+ ++ M
Sbjct: 1358 SSH--DVLKILGEKALHYYLISEIQQVYRGQGVVISDKHIEVIVSQM 1402
Score = 46 (21.3 bits), Expect = 2.3e-36, Sum P(7) = 2.3e-36
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 1096 AGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
A +K++T G+PR+ E+ A+K K ++
Sbjct: 1270 AAAKSKDITGGLPRVSELFE-ARKPKNAAV 1298
Score = 42 (19.8 bits), Expect = 2.1e-43, Sum P(8) = 2.1e-43
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 19 QFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRL-GTIDRKMKC 66
Q + SP++I+ S +++ ET KP+ GL ++ G I R +C
Sbjct: 22 QLRLASPEKIKSWSYGEVKKPETINYRTLKPERDGLFCAKIFGPI-RDYEC 71
Score = 40 (19.1 bits), Expect = 2.1e-43, Sum P(8) = 2.1e-43
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 1234 IFNDDNADKLILRIRIMNDEAP-KGELNDESAEDDVFLKKIESNMLTEMALRGVNL 1288
+ N NA L++ +I + P KG +N E+ +DV + + + LR +L
Sbjct: 973 VANRRNAAVLLVEPKI---KTPFKGVINIENIHEDVIVSIKDKKQEVKYILRKYDL 1025
Score = 38 (18.4 bits), Expect = 7.3e-30, Sum P(7) = 7.3e-30
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 725 KVNQVLNTARDEAGSSAQKSLSESNNLKAMV 755
+++ V++ EAG SA + + E+ +++V
Sbjct: 1187 EIDGVVSFEDIEAGYSADEQIDEATGKRSLV 1217
>UNIPROTKB|H9L2Z3 [details] [associations]
symbol:H9L2Z3 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008811 "chloramphenicol O-acetyltransferase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR001707 InterPro:IPR007066
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
InterPro:IPR018372 Pfam:PF00302 Pfam:PF04983 Pfam:PF04998
Pfam:PF05000 ProDom:PD002660 PROSITE:PS00100 SMART:SM01059
GO:GO:0005634 Gene3D:3.30.559.10 InterPro:IPR023213 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0003899 PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 GO:GO:0008811 EMBL:AADN02030152
EMBL:AADN02030153 EMBL:AADN02030154 Ensembl:ENSGALT00000036066
OMA:INKRELH Uniprot:H9L2Z3
Length = 533
Score = 410 (149.4 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
Identities = 108/289 (37%), Positives = 157/289 (54%)
Query: 613 VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL---GH--TQWL------V 661
V I GELL G L K G+S L+H +E G + + K L G T +L +
Sbjct: 132 VIIRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLPCLGRLFTAYLQLYRFDL 191
Query: 662 NYWLLQN----AFSIGIGDTIADAKTMET---INDTISKAKNNVKNLIKQAQDKSLEPEP 714
N + N F++G T D M ++ + + V ++ + Q E +
Sbjct: 192 NVANMDNFFAPVFTMGKYYTQGDKVLMPLAIQVHHAVCDGFH-VGRMLNELQQYCDEWQG 250
Query: 715 GRTMMESFENKVNQVLNTARDEAGS-SAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
G ++ F+ +VN N +S E NNL+ MV +G+KGS +N Q++ +
Sbjct: 251 GAVDLK-FKEEVNNYNNEVNKVCMPFGLHRSFPE-NNLQLMVQSGAKGSTVNTVQISCLL 308
Query: 774 GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
GQ +EG+R P ++LP F D+ P S GFV +L G+ P EFFFH M GREGL+
Sbjct: 309 GQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLV 368
Query: 834 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
DTAVKTS +GY+QR ++K +E ++V+YD TVR+S G V+QFLYGEDG+D
Sbjct: 369 DTAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 417
Score = 189 (71.6 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 56/195 (28%), Positives = 91/195 (46%)
Query: 490 MNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVF 549
MN H PQ+ RAE L + + P+ +P+ G++QD ++ +T R F ++ +
Sbjct: 1 MNAHFPQNELGRAEAYTLAFTDEQYLVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQY 60
Query: 550 MNILM-WWEDFDGKVPQ--PTILKPRPLWTGKQVFNL----IIPKQ-INLFRTAAWHADN 601
M ++ D G++ P I+KP+ LWTGKQV + IIP+ + L T
Sbjct: 61 MELVYRGLTDKKGRIKTFPPAIMKPQRLWTGKQVVSTLLINIIPENHVPLNLTGKAKIGG 120
Query: 602 DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
+ ++ V I GELL G L K G+S L+H +E G + + K L L
Sbjct: 121 KAWMRGPANSNVIIRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLPCLGRLF 180
Query: 662 NYWLLQNAFSIGIGD 676
+L F + + +
Sbjct: 181 TAYLQLYRFDLNVAN 195
Score = 73 (30.8 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPA 1085
++ +SL PGE +G +AAQSIGEP+
Sbjct: 509 KWQRSLCDPGEAVGLLAAQSIGEPS 533
Score = 53 (23.7 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 23/101 (22%), Positives = 46/101 (45%)
Query: 678 IADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEA 737
IAD +E +N S++ ++ K LI +S+ ++ E+FE+ V +N + E
Sbjct: 432 IADNYEVEHLNKYRSESASS-KGLIVTMDRQSISNSYFASVSETFESGVEDYIN--KREL 488
Query: 738 GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNV 778
S LS + LK ++ + S + + + Q++
Sbjct: 489 HSGEAFGLSVPSKLKDLLYLKWQRSLCDPGEAVGLLAAQSI 529
>UNIPROTKB|H9L2Z0 [details] [associations]
symbol:H9L2Z0 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007066 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF04983 Pfam:PF04998 Pfam:PF05000
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
Ensembl:ENSGALT00000036063 Uniprot:H9L2Z0
Length = 517
Score = 410 (149.4 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
Identities = 107/288 (37%), Positives = 152/288 (52%)
Query: 613 VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL---GH--TQWLVNYWLLQ 667
V I GELL G L K G+S L+H +E G + + K L G T +L Y +
Sbjct: 129 VIIRSGELLCGVLDKAHFGSSAYGLVHCCYEIYGGETSGKVLPCLGRLFTAYLQLYQYMS 188
Query: 668 NAFS-IGIGDTIA---------DA---KTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
+ + + +T + DA K N K K V N + L+
Sbjct: 189 GVLAALNLPETSSCEDVQGKWQDAHLCKDQRDFNMVDLKFKEEVNNYNNEVNKACLQLV- 247
Query: 715 GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
++ + N LN + +S E NNL+ MV +G+KGS +N Q++ +G
Sbjct: 248 -FALLSTGINCAQYFLNNSLVCMPFGLHRSFPE-NNLQLMVQSGAKGSTVNTVQISCLLG 305
Query: 775 QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
Q +EG+R P ++LP F D+ P S GFV +L G+ P EFFFH M GREGL+D
Sbjct: 306 QIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVD 365
Query: 835 TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
TAVKTS +GY+QR ++K +E ++V+YD TVR+S G V+QFLYGEDG+D
Sbjct: 366 TAVKTSRSGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 413
Score = 73 (30.8 bits), Expect = 2.2e-41, Sum P(2) = 2.2e-41
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPA 1085
++ +SL PGE +G +AAQSIGEP+
Sbjct: 493 KWQRSLCDPGEAVGLLAAQSIGEPS 517
>UNIPROTKB|E1C4T2 [details] [associations]
symbol:POLR1A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR007081 InterPro:IPR015699 Pfam:PF04998 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02014782 EMBL:AADN02014783 IPI:IPI00576593
Ensembl:ENSGALT00000025424 ArrayExpress:E1C4T2 Uniprot:E1C4T2
Length = 745
Score = 227 (85.0 bits), Expect = 2.4e-40, Sum P(4) = 2.4e-40
Identities = 50/102 (49%), Positives = 67/102 (65%)
Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK-K 1119
++ +SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ VA
Sbjct: 233 KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASAN 292
Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEV 1161
IKTP +SV + G ++ K ++ L L V + E+
Sbjct: 293 IKTPMMSVPVL-GTKKAHKKVKQLKKQLTRVCLAEVLQKVEL 333
Score = 194 (73.4 bits), Expect = 2.4e-40, Sum P(4) = 2.4e-40
Identities = 37/59 (62%), Positives = 49/59 (83%)
Query: 826 MGGREGLIDTAVKTSETGYIQRR--LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
M GREGL+DTAVKTS +GY+QR ++K +E ++V+YD TVR+S G V+QFLYGEDG+D
Sbjct: 1 MAGREGLVDTAVKTSRSGYLQRNRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 59
Score = 163 (62.4 bits), Expect = 2.4e-40, Sum P(4) = 2.4e-40
Identities = 38/131 (29%), Positives = 71/131 (54%)
Query: 1285 GVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
G+NL + + D+ D R SN + + + GIE+ R ++ E++ V + G V+ RHL
Sbjct: 607 GINLAELFRYSDILDLNRLYSNDIHAMAKNYGIESALRVVIKEIKDVFAVYGIVVDPRHL 666
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
+++ D M + G + R GI ++ + P+ + +FE + L +A + D LR + +
Sbjct: 667 SLVADYMCFEGVYKPMNRFGI-QSSSSPLQQMTFETSYKFLKEATMMGAHDELRSPSACL 725
Query: 1404 MLGQLAPIGTG 1414
+LG++ GTG
Sbjct: 726 VLGKVVKGGTG 736
Score = 49 (22.3 bits), Expect = 1.9e-25, Sum P(4) = 1.9e-25
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 166 KNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
K++GGC QP L+ + +K + K QR D E
Sbjct: 211 KSRGGC--MQPALSSDRLKDLLYLKWQRSLCDPGE 243
Score = 44 (20.5 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 16/71 (22%), Positives = 33/71 (46%)
Query: 679 ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
A K +E + D KA+NN + + ++K ++ EP ++ E K+ + +E
Sbjct: 406 ATRKDLEGVGD---KAQNNQEAPEGEEEEKIVDAEPDEGDGDATEAKMRR---NQEEEVD 459
Query: 739 SSAQKSLSESN 749
+++ E N
Sbjct: 460 YESEEENGEEN 470
Score = 40 (19.1 bits), Expect = 1.1e-05, Sum P(3) = 1.1e-05
Identities = 14/63 (22%), Positives = 31/63 (49%)
Query: 717 TMMESFENKVNQVLNTARDEA-GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQ 775
++ E+FE+ V +N ++ G Q +LS S+ LK ++ + S + + +
Sbjct: 192 SVSETFESGVEDYINKRECKSRGGCMQPALS-SDRLKDLLYLKWQRSLCDPGEAVGLLAA 250
Query: 776 QNV 778
Q++
Sbjct: 251 QSI 253
Score = 37 (18.1 bits), Expect = 2.4e-40, Sum P(4) = 2.4e-40
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 1251 NDEAPKGELNDE--SAEDD 1267
N EAP+GE ++ AE D
Sbjct: 421 NQEAPEGEEEEKIVDAEPD 439
>TAIR|locus:2061151 [details] [associations]
symbol:NRPD1B "nuclear RNA polymerase D1B" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=ISS]
[GO:0000418 "DNA-directed RNA polymerase IV complex" evidence=IPI]
[GO:0006306 "DNA methylation" evidence=RCA;IMP] [GO:0000419
"DNA-directed RNA polymerase V complex" evidence=IDA;IPI]
[GO:0030880 "RNA polymerase complex" evidence=IPI] [GO:0035194
"posttranscriptional gene silencing by RNA" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016604 "nuclear body" evidence=IDA] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IGI;IMP] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051567 "histone H3-K9 methylation" evidence=RCA] [GO:0051726
"regulation of cell cycle" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR015801 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 SMART:SM00663 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0005507 GO:GO:0048038 GO:GO:0009308
Gene3D:3.10.450.40 GO:GO:0030422 GO:GO:0006306 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0016604 EMBL:AF002109 GO:GO:0003899
eggNOG:COG0086 GO:GO:0000418 InterPro:IPR021602 Pfam:PF11523
EMBL:AY826516 EMBL:AY927744 EMBL:DQ020656 IPI:IPI00537496
PIR:D84824 PIR:E84824 RefSeq:NP_181532.2 UniGene:At.37106
ProteinModelPortal:Q5D869 SMR:Q5D869 DIP:DIP-48678N IntAct:Q5D869
STRING:Q5D869 PaxDb:Q5D869 PRIDE:Q5D869 EnsemblPlants:AT2G40030.1
GeneID:818591 KEGG:ath:AT2G40030 TAIR:At2g40030
HOGENOM:HOG000082864 InParanoid:Q5D869 KO:K16251 OMA:QSDSWDG
PhylomeDB:Q5D869 ProtClustDB:CLSN2681712 Genevestigator:Q5D869
GO:GO:0000419 Uniprot:Q5D869
Length = 1976
Score = 295 (108.9 bits), Expect = 1.5e-39, Sum P(5) = 1.5e-39
Identities = 83/269 (30%), Positives = 138/269 (51%)
Query: 327 SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE 386
S KA ++R + K FS+R+VIT D +++++G+P IA +T+ E V+ +N
Sbjct: 302 SSSKAWTEKMRTLFIRKGSGFSSRSVITGDAYRHVNEVGIPIEIAQRITFEERVSVHNRG 361
Query: 387 RLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL--GYKVERHLNDGDF 444
L++LV+ K Y Q L+ S H EL G V R + DGD
Sbjct: 362 YLQKLVD-------DKLCLSYT-----QGSTTYSLRDGSKGHTELKPGQVVHRRVMDGDV 409
Query: 445 VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 504
V NR P+ HK S+ R+ + +T ++N + SP +ADFDGD +++ PQS +AEV
Sbjct: 410 VFINRPPTTHKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGDCVHLFYPQSLSAKAEV 469
Query: 505 LELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP 564
+EL V K ++S + + ++ + D+LL R + +R F++K + M+ +P
Sbjct: 470 MELFSVEKQLLSSHTGQLILQMGSDSLLSLRVMLER-VFLDKATAQQLAMYGSL---SLP 525
Query: 565 QPTILKPR---PLWTGKQVFNLIIPKQIN 590
P + K P WT Q+ L P++++
Sbjct: 526 PPALRKSSKSGPAWTVFQILQLAFPERLS 554
Score = 177 (67.4 bits), Expect = 1.5e-39, Sum P(5) = 1.5e-39
Identities = 66/276 (23%), Positives = 121/276 (43%)
Query: 609 GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
GD + ++ +LL +G+ ++ I+ E GP F Q L+ L
Sbjct: 557 GDRFL-VDGSDLLKFDFGVDAMGSIINEIVTSIFLEKGPKETLGFFDSLQPLLMESLFAE 615
Query: 669 AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
FS+ + D M+ I++ I + + + + ++ + L+ EN +++
Sbjct: 616 GFSLSLEDLSMSRADMDVIHNLIIREISPMVSRLRLSYRDELQ----------LENSIHK 665
Query: 729 VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
V ++ A + KS S N ++ S + + Q T +G Q + K+ +
Sbjct: 666 V----KEVAANFMLKSYSIRN----LIDIKSNSAITKLVQQTGFLGLQLSDKKKFYTKTL 717
Query: 789 DRTLPHFTKDDYGPESR----GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
+ F K YG S G V+ + GL P E H++ RE ++ ++ +E G
Sbjct: 718 VEDMAIFCKRKYGRISSSGDFGIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGT 777
Query: 845 IQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGED 879
+ + L+ + DI++ DGTVRN+ + VIQF YG D
Sbjct: 778 LFKNLMAVLRDIVITNDGTVRNTCSNSVIQFKYGVD 813
Score = 105 (42.0 bits), Expect = 1.5e-39, Sum P(5) = 1.5e-39
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 49 PGGLSDPRLGTIDRKMKCETCTANMAE-CPGHFGHLELAKPMFHIGFMKTVLSIMRSVCF 107
P L++ LG KCE+C A + C GHFG+++L P++H + + ++ +C
Sbjct: 40 PSQLTNAFLGLPLEFGKCESCGATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCL 99
Query: 108 NCSKI 112
C KI
Sbjct: 100 KCLKI 104
Score = 67 (28.6 bits), Expect = 1.5e-39, Sum P(5) = 1.5e-39
Identities = 25/123 (20%), Positives = 46/123 (37%)
Query: 1297 VDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1356
+D +R+ + ++ E+LG+ + L + V H+ +L + MT G +
Sbjct: 1102 IDTKRSIPYSVKQVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIILLANNMTCSGTM 1161
Query: 1357 MAITRHGINRNDTGPMMRCSFEETVDI-----LLDAAVFAESDYLRGVTENIMLGQLAPI 1411
+ G ++ F E I AA +D L V + G+ +
Sbjct: 1162 LGFNSGGYKALTRSLNIKAPFTEATLIAPRKCFEKAAEKCHTDSLSTVVGSCSWGKRVDV 1221
Query: 1412 GTG 1414
GTG
Sbjct: 1222 GTG 1224
Score = 58 (25.5 bits), Expect = 2.0e-27, Sum P(5) = 2.0e-27
Identities = 18/71 (25%), Positives = 32/71 (45%)
Query: 1024 TLFFNIL--LRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
TLF N++ LR + + + ++ G R Q L GE +G +AA ++
Sbjct: 777 TLFKNLMAVLRDIVITNDGTVRNTCSNSVIQFKYGVDSERGHQGLFEAGEPVGVLAATAM 836
Query: 1082 GEPATQMTLNT 1092
PA + L++
Sbjct: 837 SNPAYKAVLDS 847
Score = 40 (19.1 bits), Expect = 7.9e-25, Sum P(3) = 7.9e-25
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 1372 MMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEM-LKNAI 1429
+M F E + L+ + +D V N+++ +++P+ L DE+ L+N+I
Sbjct: 608 LMESLFAEGFSLSLEDLSMSRADM--DVIHNLIIREISPM-VSRLRLSYRDELQLENSI 663
Score = 37 (18.1 bits), Expect = 1.5e-39, Sum P(5) = 1.5e-39
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 1176 VEFVKSYYEMPD-EDIAPEKISPWLL-RIELNREMMVDKKLSMAAVAEK 1222
VEF+ Y + P +I I L I LN+ ++ D +SM + +K
Sbjct: 913 VEFLVEYRKQPTISEIFG--IDSCLHGHIHLNKTLLQDWNISMQDIHQK 959
>UNIPROTKB|P0C504 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 EMBL:AY522331 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 HAMAP:MF_01323 ProteinModelPortal:P0C504
Gramene:P0C504 HOGENOM:HOG000054284 Genevestigator:P0C504
Uniprot:P0C504
Length = 682
Score = 171 (65.3 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 76/312 (24%), Positives = 141/312 (45%)
Query: 81 GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILAD--EDDHKFKQALKIRNPKNRLKKIL 138
G+++LA P+ H+ ++K + S + ++ K L D F + + RL+ +
Sbjct: 105 GYIKLACPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFARPSAKKPTFLRLRGLF 164
Query: 139 DACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKA-QRKKND 197
+ + PG ++ G GA + +L +++I E + + K+ +
Sbjct: 165 EDEISSCNHSISPFFSTPGFTTFRN-REIATGAGAIREQLADLDLRIILENSSVEWKELE 223
Query: 198 DQEQLPEPVE-RKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL------- 249
D+ + E RK+ + R + +++R+ + N P+WM+L +L
Sbjct: 224 DEGYSGDEWEDRKRRI---RKVFLIRRMQLAK-HFIQTN---VEPEWMVLCLLPVLPPEL 276
Query: 250 ---XXXXXXXXXSDDLTHQLAMIIRHNENL----RRQERNGAPAHIISEFAQLLQFHIAT 302
+ D+ +IR N NL +R E APA ++ +L+Q + T
Sbjct: 277 RPIVYRSGDKVVTSDINELYKRVIRRNNNLAYLLKRSEL--APADLVMCQEKLVQEAVDT 334
Query: 303 YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
D+ GQP + + KS+ ++ KEGR R L+GKRVD+S R+VI P++++
Sbjct: 335 LLDSGSRGQPTRDGHN-KVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLH 393
Query: 363 QLGVPWSIALNL 374
Q G+P IA+ L
Sbjct: 394 QCGLPLEIAIKL 405
Score = 160 (61.4 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 42/135 (31%), Positives = 71/135 (52%)
Query: 407 YIIRD-DGQRL--DLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
++IRD +R ++R K+ + +++ + + G VL NR P+LH++ I +
Sbjct: 409 FVIRDLITKRATSNVRIAKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQP 468
Query: 464 KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
++ T L+ V +NADFDGD+M +H+P S E +AE LM ++SP P+
Sbjct: 469 TLVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPI 528
Query: 524 MGIVQDTLLGCRKIT 538
QD L+G +T
Sbjct: 529 CVPTQDMLIGLYVLT 543
Score = 43 (20.2 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGE 40
K + +Q G++SP +I+ + + +GE
Sbjct: 6 KHQQLQIGLVSPQQIKAWANKTLPNGE 32
>UNIPROTKB|P0C505 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:AY522329 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 ProtClustDB:CHL00018
HAMAP:MF_01323 RefSeq:YP_654207.2 ProteinModelPortal:P0C505
GeneID:4126923 Gramene:P0C505 Uniprot:P0C505
Length = 682
Score = 171 (65.3 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 76/312 (24%), Positives = 141/312 (45%)
Query: 81 GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILAD--EDDHKFKQALKIRNPKNRLKKIL 138
G+++LA P+ H+ ++K + S + ++ K L D F + + RL+ +
Sbjct: 105 GYIKLACPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFARPSAKKPTFLRLRGLF 164
Query: 139 DACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKA-QRKKND 197
+ + PG ++ G GA + +L +++I E + + K+ +
Sbjct: 165 EDEISSCNHSISPFFSTPGFTTFRN-REIATGAGAIREQLADLDLRIILENSSVEWKELE 223
Query: 198 DQEQLPEPVE-RKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL------- 249
D+ + E RK+ + R + +++R+ + N P+WM+L +L
Sbjct: 224 DEGYSGDEWEDRKRRI---RKVFLIRRMQLAK-HFIQTN---VEPEWMVLCLLPVLPPEL 276
Query: 250 ---XXXXXXXXXSDDLTHQLAMIIRHNENL----RRQERNGAPAHIISEFAQLLQFHIAT 302
+ D+ +IR N NL +R E APA ++ +L+Q + T
Sbjct: 277 RPIVYRSGDKVVTSDINELYKRVIRRNNNLAYLLKRSEL--APADLVMCQEKLVQEAVDT 334
Query: 303 YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
D+ GQP + + KS+ ++ KEGR R L+GKRVD+S R+VI P++++
Sbjct: 335 LLDSGSRGQPTRDGHN-KVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLH 393
Query: 363 QLGVPWSIALNL 374
Q G+P IA+ L
Sbjct: 394 QCGLPLEIAIKL 405
Score = 160 (61.4 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 42/135 (31%), Positives = 71/135 (52%)
Query: 407 YIIRD-DGQRL--DLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
++IRD +R ++R K+ + +++ + + G VL NR P+LH++ I +
Sbjct: 409 FVIRDLITKRATSNVRIAKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQP 468
Query: 464 KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
++ T L+ V +NADFDGD+M +H+P S E +AE LM ++SP P+
Sbjct: 469 TLVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPI 528
Query: 524 MGIVQDTLLGCRKIT 538
QD L+G +T
Sbjct: 529 CVPTQDMLIGLYVLT 543
Score = 43 (20.2 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGE 40
K + +Q G++SP +I+ + + +GE
Sbjct: 6 KHQQLQIGLVSPQQIKAWANKTLPNGE 32
>UNIPROTKB|P0C506 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
GenomeReviews:AY522330_GR Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 eggNOG:COG0086 ProtClustDB:CHL00018 HAMAP:MF_01323
PIR:JQ0214 RefSeq:NP_039374.1 ProteinModelPortal:P0C506
STRING:P0C506 EnsemblPlants:LOC_Osp1g00250.1 GeneID:3131433
KEGG:osa:3131433 Gramene:P0C506 KO:K03046 OMA:VIDNFIA
Uniprot:P0C506
Length = 682
Score = 171 (65.3 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 76/312 (24%), Positives = 141/312 (45%)
Query: 81 GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILAD--EDDHKFKQALKIRNPKNRLKKIL 138
G+++LA P+ H+ ++K + S + ++ K L D F + + RL+ +
Sbjct: 105 GYIKLACPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFARPSAKKPTFLRLRGLF 164
Query: 139 DACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKA-QRKKND 197
+ + PG ++ G GA + +L +++I E + + K+ +
Sbjct: 165 EDEISSCNHSISPFFSTPGFTTFRN-REIATGAGAIREQLADLDLRIILENSSVEWKELE 223
Query: 198 DQEQLPEPVE-RKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL------- 249
D+ + E RK+ + R + +++R+ + N P+WM+L +L
Sbjct: 224 DEGYSGDEWEDRKRRI---RKVFLIRRMQLAK-HFIQTN---VEPEWMVLCLLPVLPPEL 276
Query: 250 ---XXXXXXXXXSDDLTHQLAMIIRHNENL----RRQERNGAPAHIISEFAQLLQFHIAT 302
+ D+ +IR N NL +R E APA ++ +L+Q + T
Sbjct: 277 RPIVYRSGDKVVTSDINELYKRVIRRNNNLAYLLKRSEL--APADLVMCQEKLVQEAVDT 334
Query: 303 YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
D+ GQP + + KS+ ++ KEGR R L+GKRVD+S R+VI P++++
Sbjct: 335 LLDSGSRGQPTRDGHN-KVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLH 393
Query: 363 QLGVPWSIALNL 374
Q G+P IA+ L
Sbjct: 394 QCGLPLEIAIKL 405
Score = 160 (61.4 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 42/135 (31%), Positives = 71/135 (52%)
Query: 407 YIIRD-DGQRL--DLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
++IRD +R ++R K+ + +++ + + G VL NR P+LH++ I +
Sbjct: 409 FVIRDLITKRATSNVRIAKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQP 468
Query: 464 KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
++ T L+ V +NADFDGD+M +H+P S E +AE LM ++SP P+
Sbjct: 469 TLVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPI 528
Query: 524 MGIVQDTLLGCRKIT 538
QD L+G +T
Sbjct: 529 CVPTQDMLIGLYVLT 543
Score = 43 (20.2 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGE 40
K + +Q G++SP +I+ + + +GE
Sbjct: 6 KHQQLQIGLVSPQQIKAWANKTLPNGE 32
>UNIPROTKB|Q6ENI3 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AP006728
GO:GO:0003899 RefSeq:YP_052740.1 ProteinModelPortal:Q6ENI3
GeneID:2885900 Gramene:Q6ENI3 ProtClustDB:CHL00018 HAMAP:MF_01323
Uniprot:Q6ENI3
Length = 682
Score = 171 (65.3 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 76/312 (24%), Positives = 141/312 (45%)
Query: 81 GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILAD--EDDHKFKQALKIRNPKNRLKKIL 138
G+++LA P+ H+ ++K + S + ++ K L D F + + RL+ +
Sbjct: 105 GYIKLACPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFSFARPSAKKPTFLRLRGLF 164
Query: 139 DACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKA-QRKKND 197
+ + PG ++ G GA + +L +++I E + + K+ +
Sbjct: 165 EDEISSCNHSISPFFSTPGFTTFRN-REIATGAGAIREQLADLDLRIILENSSVEWKELE 223
Query: 198 DQEQLPEPVE-RKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL------- 249
D+ + E RK+ + R + +++R+ + N P+WM+L +L
Sbjct: 224 DEGYSGDEWEDRKRRI---RKVFLIRRMQLAK-HFIQTN---VEPEWMVLCLLPVLPPEL 276
Query: 250 ---XXXXXXXXXSDDLTHQLAMIIRHNENL----RRQERNGAPAHIISEFAQLLQFHIAT 302
+ D+ +IR N NL +R E APA ++ +L+Q + T
Sbjct: 277 RPIVYRSGDKVVTSDINELYKRVIRRNNNLAYLLKRSEL--APADLVMCQEKLVQEAVDT 334
Query: 303 YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
D+ GQP + + KS+ ++ KEGR R L+GKRVD+S R+VI P++++
Sbjct: 335 LLDSGSRGQPTRDGHN-KVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLH 393
Query: 363 QLGVPWSIALNL 374
Q G+P IA+ L
Sbjct: 394 QCGLPLEIAIKL 405
Score = 160 (61.4 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 42/135 (31%), Positives = 71/135 (52%)
Query: 407 YIIRD-DGQRL--DLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
++IRD +R ++R K+ + +++ + + G VL NR P+LH++ I +
Sbjct: 409 FVIRDLITKRATSNVRIAKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQP 468
Query: 464 KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
++ T L+ V +NADFDGD+M +H+P S E +AE LM ++SP P+
Sbjct: 469 TLVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLSPAIGDPI 528
Query: 524 MGIVQDTLLGCRKIT 538
QD L+G +T
Sbjct: 529 CVPTQDMLIGLYVLT 543
Score = 43 (20.2 bits), Expect = 1.9e-19, Sum P(3) = 1.9e-19
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGE 40
K + +Q G++SP +I+ + + +GE
Sbjct: 6 KHQQLQIGLVSPQQIKAWANKTLPNGE 32
>UNIPROTKB|P0C507 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AY522331
GO:GO:0003899 TIGRFAMs:TIGR02388 ProteinModelPortal:P0C507
Gramene:P0C507 HOGENOM:HOG000154184 Genevestigator:P0C507
Uniprot:P0C507
Length = 1513
Score = 123 (48.4 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 1346 LCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIML 1405
L +++ YR L+ ITR +N + SF+ET +L AA+ D+L+G+ EN++L
Sbjct: 1386 LDESIYYRAILLGITRVSLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVL 1443
Query: 1406 GQLAPIGTG 1414
G + P+GTG
Sbjct: 1444 GGIIPVGTG 1452
Score = 115 (45.5 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 22/60 (36%), Positives = 42/60 (70%)
Query: 808 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKY-D-GTVR 865
++++ GL+ E+ G R+G++DTAV+T++ GY+ RRLV+ ++ I+V+ D GT++
Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDCGTIQ 224
Score = 108 (43.1 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1098
LV GE +G +A QSIGEP TQ+TL TFH GV
Sbjct: 316 LVELGEAVGVIAGQSIGEPGTQLTLRTFHTGGV 348
Score = 52 (23.4 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 1090 LNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNV 1143
L TF Y + ++T G+P++ +I A+ I SLS L+ + ER +
Sbjct: 1254 LVTFIYEKARSSDITQGLPKVEQIFE-ARSID--SLSPNLERRIEDWNERIPRI 1304
Score = 46 (21.3 bits), Expect = 9.3e-07, Sum P(4) = 9.3e-07
Identities = 19/88 (21%), Positives = 42/88 (47%)
Query: 1314 LGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGI-NRNDTGPM 1372
L I R +L+++++ V G ++ RH+ I+ +T + + ++ G+ N G +
Sbjct: 1317 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSK---VRVSEDGMSNVFSPGEL 1373
Query: 1373 MRCSFEETVDILLDAAVFAESDYLRGVT 1400
+ E LD +++ + L G+T
Sbjct: 1374 IGLLRAERAGRALDESIYYRA-ILLGIT 1400
Score = 45 (20.9 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 22/58 (37%), Positives = 27/58 (46%)
Query: 1038 KRVLKEHRLTREAFEWVIGEIESRF--LQSL-VAPGEMIGCVAAQSIGEPATQMTLNT 1092
K VL EHR T+E E++ F LQ L + P V SI TQ+T NT
Sbjct: 772 KGVLIEHRGTKEFSLKYQKEVDRFFFILQELHILPRSSSLKVLDNSIIGVDTQLTKNT 829
Score = 43 (20.2 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 1063 LQSLVAPGEMIGCVAAQSIG 1082
+ ++ +PGE+IG + A+ G
Sbjct: 1364 MSNVFSPGELIGLLRAERAG 1383
Score = 41 (19.5 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1166 DPMGTIIEEDVEFVKSYYEMPDEDIAPEK 1194
D GT+ E+ E + Y P+ED +K
Sbjct: 744 DEHGTLEEDSEEDSEDEYGNPEEDSVLKK 772
Score = 39 (18.8 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 1279 TEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEA 1318
T R + + +C+ R +T L+E+ E +G+ A
Sbjct: 292 TPFTCRSTSWICQLCY----GRSSTHGDLVELGEAVGVIA 327
>UNIPROTKB|P0C508 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AY522329
GO:GO:0003899 ProtClustDB:CHL00117 TIGRFAMs:TIGR02388
RefSeq:YP_654208.1 ProteinModelPortal:P0C508 GeneID:4126924
Gramene:P0C508 Uniprot:P0C508
Length = 1513
Score = 123 (48.4 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 1346 LCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIML 1405
L +++ YR L+ ITR +N + SF+ET +L AA+ D+L+G+ EN++L
Sbjct: 1386 LDESIYYRAILLGITRVSLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVL 1443
Query: 1406 GQLAPIGTG 1414
G + P+GTG
Sbjct: 1444 GGIIPVGTG 1452
Score = 115 (45.5 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 22/60 (36%), Positives = 42/60 (70%)
Query: 808 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKY-D-GTVR 865
++++ GL+ E+ G R+G++DTAV+T++ GY+ RRLV+ ++ I+V+ D GT++
Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDCGTIQ 224
Score = 108 (43.1 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1098
LV GE +G +A QSIGEP TQ+TL TFH GV
Sbjct: 316 LVELGEAVGVIAGQSIGEPGTQLTLRTFHTGGV 348
Score = 52 (23.4 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 1090 LNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNV 1143
L TF Y + ++T G+P++ +I A+ I SLS L+ + ER +
Sbjct: 1254 LVTFIYEKARSSDITQGLPKVEQIFE-ARSID--SLSPNLERRIEDWNERIPRI 1304
Score = 46 (21.3 bits), Expect = 9.3e-07, Sum P(4) = 9.3e-07
Identities = 19/88 (21%), Positives = 42/88 (47%)
Query: 1314 LGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGI-NRNDTGPM 1372
L I R +L+++++ V G ++ RH+ I+ +T + + ++ G+ N G +
Sbjct: 1317 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSK---VRVSEDGMSNVFSPGEL 1373
Query: 1373 MRCSFEETVDILLDAAVFAESDYLRGVT 1400
+ E LD +++ + L G+T
Sbjct: 1374 IGLLRAERAGRALDESIYYRA-ILLGIT 1400
Score = 45 (20.9 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 22/58 (37%), Positives = 27/58 (46%)
Query: 1038 KRVLKEHRLTREAFEWVIGEIESRF--LQSL-VAPGEMIGCVAAQSIGEPATQMTLNT 1092
K VL EHR T+E E++ F LQ L + P V SI TQ+T NT
Sbjct: 772 KGVLIEHRGTKEFSLKYQKEVDRFFFILQELHILPRSSSLKVLDNSIIGVDTQLTKNT 829
Score = 43 (20.2 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 1063 LQSLVAPGEMIGCVAAQSIG 1082
+ ++ +PGE+IG + A+ G
Sbjct: 1364 MSNVFSPGELIGLLRAERAG 1383
Score = 41 (19.5 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1166 DPMGTIIEEDVEFVKSYYEMPDEDIAPEK 1194
D GT+ E+ E + Y P+ED +K
Sbjct: 744 DEHGTLEEDSEEDSEDEYGNPEEDSVLKK 772
Score = 39 (18.8 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 1279 TEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEA 1318
T R + + +C+ R +T L+E+ E +G+ A
Sbjct: 292 TPFTCRSTSWICQLCY----GRSSTHGDLVELGEAVGVIA 327
>UNIPROTKB|P0C509 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
GO:GO:0003899 eggNOG:COG0086 KO:K03046 ProtClustDB:CHL00117
TIGRFAMs:TIGR02388 PIR:JQ0215 RefSeq:NP_039375.1
ProteinModelPortal:P0C509 STRING:P0C509 GeneID:3131434
KEGG:osa:3131434 Gramene:P0C509 Uniprot:P0C509
Length = 1513
Score = 123 (48.4 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 1346 LCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIML 1405
L +++ YR L+ ITR +N + SF+ET +L AA+ D+L+G+ EN++L
Sbjct: 1386 LDESIYYRAILLGITRVSLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVL 1443
Query: 1406 GQLAPIGTG 1414
G + P+GTG
Sbjct: 1444 GGIIPVGTG 1452
Score = 115 (45.5 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 22/60 (36%), Positives = 42/60 (70%)
Query: 808 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKY-D-GTVR 865
++++ GL+ E+ G R+G++DTAV+T++ GY+ RRLV+ ++ I+V+ D GT++
Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDCGTIQ 224
Score = 108 (43.1 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1098
LV GE +G +A QSIGEP TQ+TL TFH GV
Sbjct: 316 LVELGEAVGVIAGQSIGEPGTQLTLRTFHTGGV 348
Score = 52 (23.4 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 1090 LNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNV 1143
L TF Y + ++T G+P++ +I A+ I SLS L+ + ER +
Sbjct: 1254 LVTFIYEKARSSDITQGLPKVEQIFE-ARSID--SLSPNLERRIEDWNERIPRI 1304
Score = 46 (21.3 bits), Expect = 9.3e-07, Sum P(4) = 9.3e-07
Identities = 19/88 (21%), Positives = 42/88 (47%)
Query: 1314 LGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGI-NRNDTGPM 1372
L I R +L+++++ V G ++ RH+ I+ +T + + ++ G+ N G +
Sbjct: 1317 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSK---VRVSEDGMSNVFSPGEL 1373
Query: 1373 MRCSFEETVDILLDAAVFAESDYLRGVT 1400
+ E LD +++ + L G+T
Sbjct: 1374 IGLLRAERAGRALDESIYYRA-ILLGIT 1400
Score = 45 (20.9 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 22/58 (37%), Positives = 27/58 (46%)
Query: 1038 KRVLKEHRLTREAFEWVIGEIESRF--LQSL-VAPGEMIGCVAAQSIGEPATQMTLNT 1092
K VL EHR T+E E++ F LQ L + P V SI TQ+T NT
Sbjct: 772 KGVLIEHRGTKEFSLKYQKEVDRFFFILQELHILPRSSSLKVLDNSIIGVDTQLTKNT 829
Score = 43 (20.2 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 1063 LQSLVAPGEMIGCVAAQSIG 1082
+ ++ +PGE+IG + A+ G
Sbjct: 1364 MSNVFSPGELIGLLRAERAG 1383
Score = 41 (19.5 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1166 DPMGTIIEEDVEFVKSYYEMPDEDIAPEK 1194
D GT+ E+ E + Y P+ED +K
Sbjct: 744 DEHGTLEEDSEEDSEDEYGNPEEDSVLKK 772
Score = 39 (18.8 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 1279 TEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEA 1318
T R + + +C+ R +T L+E+ E +G+ A
Sbjct: 292 TPFTCRSTSWICQLCY----GRSSTHGDLVELGEAVGVIA 327
>UNIPROTKB|Q6ENI2 [details] [associations]
symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AP006728
GO:GO:0003899 RefSeq:YP_052741.1 ProteinModelPortal:Q6ENI2
GeneID:2885930 Gramene:Q6ENI2 ProtClustDB:CHL00117
TIGRFAMs:TIGR02388 Uniprot:Q6ENI2
Length = 1513
Score = 123 (48.4 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 1346 LCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIML 1405
L +++ YR L+ ITR +N + SF+ET +L AA+ D+L+G+ EN++L
Sbjct: 1386 LDESIYYRAILLGITRVSLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVL 1443
Query: 1406 GQLAPIGTG 1414
G + P+GTG
Sbjct: 1444 GGIIPVGTG 1452
Score = 115 (45.5 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 22/60 (36%), Positives = 42/60 (70%)
Query: 808 VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKY-D-GTVR 865
++++ GL+ E+ G R+G++DTAV+T++ GY+ RRLV+ ++ I+V+ D GT++
Sbjct: 165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVRRRDCGTIQ 224
Score = 108 (43.1 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1098
LV GE +G +A QSIGEP TQ+TL TFH GV
Sbjct: 316 LVELGEAVGVIAGQSIGEPGTQLTLRTFHTGGV 348
Score = 52 (23.4 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 1090 LNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNV 1143
L TF Y + ++T G+P++ +I A+ I SLS L+ + ER +
Sbjct: 1254 LVTFIYEKARSSDITQGLPKVEQIFE-ARSID--SLSPNLERRIEDWNERIPRI 1304
Score = 46 (21.3 bits), Expect = 9.3e-07, Sum P(4) = 9.3e-07
Identities = 19/88 (21%), Positives = 42/88 (47%)
Query: 1314 LGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGI-NRNDTGPM 1372
L I R +L+++++ V G ++ RH+ I+ +T + + ++ G+ N G +
Sbjct: 1317 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSK---VRVSEDGMSNVFSPGEL 1373
Query: 1373 MRCSFEETVDILLDAAVFAESDYLRGVT 1400
+ E LD +++ + L G+T
Sbjct: 1374 IGLLRAERAGRALDESIYYRA-ILLGIT 1400
Score = 45 (20.9 bits), Expect = 3.2e-09, Sum P(4) = 3.2e-09
Identities = 22/58 (37%), Positives = 27/58 (46%)
Query: 1038 KRVLKEHRLTREAFEWVIGEIESRF--LQSL-VAPGEMIGCVAAQSIGEPATQMTLNT 1092
K VL EHR T+E E++ F LQ L + P V SI TQ+T NT
Sbjct: 772 KGVLIEHRGTKEFSLKYQKEVDRFFFILQELHILPRSSSLKVLDNSIIGVDTQLTKNT 829
Score = 43 (20.2 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 1063 LQSLVAPGEMIGCVAAQSIG 1082
+ ++ +PGE+IG + A+ G
Sbjct: 1364 MSNVFSPGELIGLLRAERAG 1383
Score = 41 (19.5 bits), Expect = 2.2e-14, Sum P(4) = 2.2e-14
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 1166 DPMGTIIEEDVEFVKSYYEMPDEDIAPEK 1194
D GT+ E+ E + Y P+ED +K
Sbjct: 744 DEHGTLEEDSEEDSEDEYGNPEEDSVLKK 772
Score = 39 (18.8 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 1279 TEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEA 1318
T R + + +C+ R +T L+E+ E +G+ A
Sbjct: 292 TPFTCRSTSWICQLCY----GRSSTHGDLVELGEAVGVIA 327
>UNIPROTKB|I3LQ53 [details] [associations]
symbol:I3LQ53 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000684 Pfam:PF05001 PROSITE:PS00115 GO:GO:0003677
GO:GO:0006366 GO:GO:0005665 GeneTree:ENSGT00700000104490
EMBL:FP565284 Ensembl:ENSSSCT00000030016 OMA:YAESDYL Uniprot:I3LQ53
Length = 543
Score = 203 (76.5 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 56/125 (44%), Positives = 76/125 (60%)
Query: 1373 MRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL- 1431
M+CSFEETVD+L++AA ESD ++GV+ENIMLGQLAP GTG L L+ E K +E+
Sbjct: 1 MKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIP 60
Query: 1432 -QLPSY----MEGLEFGMTPARSPVSG-----TPYHDGMMSPGY-LFSPNLRLSPVTD-- 1478
+P G+ FG P SP+ G TP++ G +P Y +SP++ S +T
Sbjct: 61 TNIPGLGAAGPTGMFFGSAP--SPMGGISPAMTPWNQGA-TPAYGAWSPSVG-SGMTPGA 116
Query: 1479 AQFSP 1483
A FSP
Sbjct: 117 AGFSP 121
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.135 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1815 1495 0.00097 124 3 11 22 0.40 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 90
No. of states in DFA: 637 (68 KB)
Total size of DFA: 623 KB (2276 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 143.00u 0.11s 143.11t Elapsed: 00:00:06
Total cpu time: 143.06u 0.11s 143.17t Elapsed: 00:00:06
Start: Fri May 10 13:43:49 2013 End: Fri May 10 13:43:55 2013