BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 000235
         (1815 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|255579596|ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
            communis]
 gi|223529812|gb|EEF31747.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
            communis]
          Length = 1855

 Score = 2999 bits (7775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1643/1877 (87%), Positives = 1726/1877 (91%), Gaps = 84/1877 (4%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            MD RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIE  ETTERGKPKPGGLSD RLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGF+KTVLSIMR VCFNCSKILADE+DHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            FKQALKI+NPKNRLKKILDACKNKTKCEGGD+IDV  QD +EP+KK++GGCGAQQP++TI
Sbjct: 121  FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISD+DC+LLG NPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240

Query: 241  PDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMILQVLP          +     R  DDLTHQLAMIIRHNENL++QE+ GAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 591  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
            L RTAAWH+D+++G++T GDTLVRIEKGELLSGT+CKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TIS AKN VK LI++AQ+K L
Sbjct: 661  RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKEL 720

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP+PGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            LDSLKMKKSEFD+ F++E+D+ENWNP YM Q++IDDLK I+ELRDVFDAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQ 960

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L TEIAT+GDSSWPLPVNL+RLIWNAQKTFKVD RRPSD+HPME VEAVDKLQERLKVVP
Sbjct: 961  LGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVP 1020

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLSVEAQKNATLFF ILLRST ASKRVL+++RLTREAF+WVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPG 1080

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS+FL 
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLI 1140

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            P  N TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FVKSYYEMPDE+I
Sbjct: 1141 PECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1200

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            +PEKISPWLLRIELNREMMVDKKL+MA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 SPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG------------------------- 1285
            NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG                         
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKT 1320

Query: 1286 ----------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
                      VNLLAVMC+E+VDARRTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 IEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADY 1440

Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
            LRGVTENIMLGQLAPIGTGDC+LYLND+MLKNAIELQLPSYM+GL+FGMTPARSPVS TP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMDGLDFGMTPARSPVSVTP 1500

Query: 1456 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPT--------------SSPGYSPS 1501
            YHDGMMSP YL SP+LRLSP TDAQFSPYV GM FSPT              SSPGYSP+
Sbjct: 1501 YHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPFSPTLSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1561
            SPGYSP+SPGYSPTSPGYSPTSP YSP+SPGYSPTSP YSP+SP YSPTSP+YSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
            SPTSPSYSPTSPSYSPTSPSYSPTSP YSPTSP+Y                     SPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAY---------------------SPTS 1659

Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
            PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS
Sbjct: 1660 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1719

Query: 1682 PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY 1741
            PTSP+YSPTSPSYNPQSAKYSPSLAYSPSSPRLSP+SPYSPTSPNYSPTS SYSPTSPSY
Sbjct: 1720 PTSPSYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSY 1779

Query: 1742 SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDST 1801
            SPSSPTYSPSSPYN+G G PDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYT  + +DD T
Sbjct: 1780 SPSSPTYSPSSPYNSGVG-PDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTQTSTKDDRT 1838

Query: 1802 TKDDKN---TKGDKSSR 1815
             K D+N    K +KSSR
Sbjct: 1839 DKGDRNGRDNKDEKSSR 1855


>gi|225459758|ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 2956 bits (7664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1528/1847 (82%), Positives = 1616/1847 (87%), Gaps = 155/1847 (8%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            MD RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1    MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADE+DHK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            FKQA KIRNPKNRLKKILDACKNK+KCEGGDEI+    D +EP+KK++GGCGAQQPKLTI
Sbjct: 121  FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EGMKMIAEYK QRKKNDD EQLPEPVERKQ L+AERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 181  EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240

Query: 241  PDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMILQVLP          +     R  DDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            +DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600

Query: 591  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
            L RT+AWH++++ G +T GDT VRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ AQ++ L
Sbjct: 661  RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            LDSLKMKK EFD+ F++E+D+ENWNP+YML E+++DLKTI+E R+VFDAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L TEIAT+GD+SWP+PVNLKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 961  LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+D +S+EAQKNATLFFNILLRSTFASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            P V+ TKERAKNVQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FVKSYYEMPDE++
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG------------------------- 1285
            NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRG                         
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320

Query: 1286 ----------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
                      VNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440

Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
            LRGVTENIMLGQLAPIGTGDC+LYLND+ML++AIELQLPSYMEGL+FGMTP+RSP++GTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPITGTP 1500

Query: 1456 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF--------------SPTSSPGYSPS 1501
            YHDGMMSP YL SPNLRLSP+TDAQFSPYVGGMAF                 SSPGYSP+
Sbjct: 1501 YHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG--------------- 1546
            SPGYSP+SPGYSPTSPGYSPTSP YSP+SPGYSPTSP YSP+SP                
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1547 ---------------------------YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1579
                                       YSPTSP+YSPTSP+YSPTSP+YSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTS 1680

Query: 1580 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS 1639
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP YSPTSP+YSPTSPSYSPTSPSY+
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740

Query: 1640 PTSPSYSPT----------------------------------------SPSYSPTSPSY 1659
            P+S  YSP+                                        SP+YSPTSP  
Sbjct: 1741 PSSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSPASPTYSPTSPYN 1800

Query: 1660 SPTSP-------------AYSPTSPGYSPTSPS-YSPTSPTYSPTSP 1692
            S  SP              YSP++PGYSP+S S Y+P        SP
Sbjct: 1801 SGVSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSNKDNGSP 1847



 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 228/365 (62%), Positives = 246/365 (67%), Gaps = 101/365 (27%)

Query: 1530 SPGYSPTSPT-YSPS--SPGY--------SPTSPA-YSP--------------------- 1556
            +P  SP + T Y     SP Y        SP + A +SP                     
Sbjct: 1490 TPSRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAFSPTSSPGYSPSSPG 1549

Query: 1557 ----------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS----------- 1595
                      TSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+           
Sbjct: 1550 YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPT 1609

Query: 1596 --------------------------------------YSPTSPSYSPTSPAYSPTSPAY 1617
                                                  YSPTSPSYSPTSPAYSPTSPAY
Sbjct: 1610 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPSYSPTSPAYSPTSPAY 1669

Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 1677
            SPTSP+       YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS
Sbjct: 1670 SPTSPS-------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 1722

Query: 1678 PSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPT 1737
            PSYSPTSP+YSPTSPSYNP SAKYSPSLAYSPSSPRLSP+SPYSPTSPNYSPTS SYSPT
Sbjct: 1723 PSYSPTSPSYSPTSPSYNPSSAKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPT 1782

Query: 1738 SPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQ-TN 1796
            SPSYSP+SPTYSP+SPYN+ G +PDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQ +N
Sbjct: 1783 SPSYSPASPTYSPTSPYNS-GVSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSN 1841

Query: 1797 RDDST 1801
            +D+ +
Sbjct: 1842 KDNGS 1846


>gi|449456849|ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score = 2943 bits (7629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1557/1819 (85%), Positives = 1657/1819 (91%), Gaps = 82/1819 (4%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            MD RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPK  GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMRSVCFNCSKIL DE+D K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            FKQAL+I+NPKNRL+KILDACKNKTKCEGGDEIDV GQD ++P+KK++GGCGAQQPK++I
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EGMKM AEYKAQRKKNDD EQLPEPVERKQTLTAERVLG+LKRI+DEDC+LLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMILQVLP          +     R  DDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+P P ILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 591  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
            L RT+AWH++++ G +T GDT VRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TME IN+TIS AKN VKNLIK+AQ++SL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EPEPGRTMM+SFENKVNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            LDSLKMKK EF++ FR+E ++ENW PNYML E+++DLKTI+E R+VF+AEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L TEIAT+G++SWP+PVNLKRLI NAQKTFK+D RR SDMHPME+VEA+DKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            GEDPLSVEAQKNATLFFNILLRSTFASKRVL E+RLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            P  N TKERAK VQCALEYTTLRSVT+ATEVWYDPDPM TIIEED++FVKSYYEMPDE+I
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------------------- 1284
            NDEAPKGEL DESAEDDVFLKKIESNMLTEMALR                          
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1285 ---------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
                     GVNLLAVM HEDVDARRTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
            LRGVTENIMLGQLAPIGTG C+LYLNDEMLKNAIELQLPSY++GL+FGMTP+RSP+SGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1456 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF---------------------SPTS 1494
            YH+GMMSP YL SPNLRLSP++DAQFSPYVGGMAF                        +
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1495 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1554
            SPGYSP+SPGYSP+SPGYSPTSP YSP+SPGYSPTSP YSPTSP+YSP+SP YSPTSP+Y
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
            SPTSPSYSPTSPSYSPTSPSYSP SP+YSPTSP+YSPTSP+YSPTSPSYSPTSP+YSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPXSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

Query: 1615 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY-------- 1666
            P+YSPTSPAYSPTSP YSPTSPSYSPTSPSYSPTSPSY+P S  YSP S AY        
Sbjct: 1681 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSP-SQAYLPSSPRLS 1739

Query: 1667 -----SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYS-PSLAYSPSSPRLSPASPY 1720
                 SPTSP YSPTSPSYSPTSP YSP+SP+Y+P S   + PS  YSPSSP+ SP++ Y
Sbjct: 1740 PSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGY 1799

Query: 1721 SPTSPNYSPTSSS-YSPTS 1738
            SPT+P YSP+S+S Y+P +
Sbjct: 1800 SPTAPGYSPSSTSQYTPQT 1818


>gi|449524332|ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 2943 bits (7629), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1526/1839 (82%), Positives = 1614/1839 (87%), Gaps = 155/1839 (8%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            MD RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPK  GLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMRSVCFNCSKIL DE+D K
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            FKQAL+I+NPKNRL+KILDACKNKTKCEGGDEIDV GQD ++P+KK++GGCGAQQPK++I
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EGMKM AEYKAQRKKNDD EQLPEPVERKQTLTAERVLG+LKRI+DEDC+LLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMILQVLP          +     R  DDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            LLGCRKITKRDTFI KDVFMN LMWWEDFDGK+P P ILKP+PLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 591  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
            L RT+AWH++++ G +T GDT VRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TME IN+TIS AKN VKNLIK+AQ++SL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EPEPGRTMM+SFENKVNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            LDSLKMKK EF++ FR+E ++ENW PNYML E+++DLKTI+E R+VF+AEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L TEIAT+G++SWP+PVNLKRLI NAQKTFK+D RR SDMHPME+VEA+DKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            GEDPLSVEAQKNATLFFNILLRSTFASKRVL E+RLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            P  N TKERAK VQCALEYTTLRSVT+ATEVWYDPDPM TIIEED++FVKSYYEMPDE+I
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------------------- 1284
            NDEAPKGEL DESAEDDVFLKKIESNMLTEMALR                          
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1285 ---------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
                     GVNLLAVM HEDVDARRTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+D+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
            LRGVTENIMLGQLAPIGTG C+LYLNDEMLKNAIELQLPSY++GL+FGMTP+RSP+SGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1456 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF--------------SPTSSPGYSPS 1501
            YH+GMMSP YL SPNLRLSP++DAQFSPYVGGMAF                 SSPGYSP+
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT---------------------- 1539
            SPGYSP+SPGYSPTSPGYSPTSP YSP+SPGYSPTSP                       
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1540 --------------------YSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1579
                                YSP+SP YSPTSPAYSPTSP+YSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

Query: 1580 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS 1639
            PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP YSPTSP+YSPTSPSYSPTSPSY+
Sbjct: 1681 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYN 1740

Query: 1640 PTSPSYSPTSP-------------------SYSPTSPSYSPTSPA--------------- 1665
            P S  YSP+                     +YSPTSPSYSPTSPA               
Sbjct: 1741 PQSAKYSPSQAYLPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPAYSPSSPTYSPSSPYN 1800

Query: 1666 -------------------YSPTSPGYSPTSPS-YSPTS 1684
                               YSPT+PGYSP+S S Y+P +
Sbjct: 1801 TGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQT 1839


>gi|356538329|ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
            max]
          Length = 1827

 Score = 2939 bits (7618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1597/1863 (85%), Positives = 1695/1863 (90%), Gaps = 96/1863 (5%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+KTVL+IMR VCFNCSKILADE+DHK
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            FKQAL+IRNPKNRLKKILDACKNK+KCEGGDEID+PGQD +EP+KK++GGCGAQQPK+TI
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EGMKMIAEYKAQRKK+DDQEQLPEPVERKQTL+AERVLGVLKRISDEDCQLLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 241  PDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMILQVLP          +     R  DDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVP P ILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600

Query: 591  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
            L R ++WH+++++G +T GDT+VRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601  LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TMETIN TIS AK  VK LI++AQ+K L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            E EPGRTMM+SFEN+VNQ LN ARD+AG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            LDSLKMKK+EFD+ FR+E D+ENW P YML+E ++DLKTI+E R+VF+AEVQKLEADRYQ
Sbjct: 901  LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            LATEIAT+GDSS PLPVNLKRLIWNAQKTFKVD RRPSDMHPME+VEA+DKLQERLKVVP
Sbjct: 961  LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            GED LS EAQKNATL FNILLRSTFASKRVL+E+RL+REAFEWV+GEIESRFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+L+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
              V  TKERAK+VQCALEYTTLRSVT+ATEVWYDPDPM TIIEED +FVKSYYEMPDE++
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A EKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------------------- 1284
            NDEAPKGE+ DESAEDDVFLKKIESNMLTEM LR                          
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320

Query: 1285 ---------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
                     GVNLLAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440

Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
            LRGVTENIMLGQLAPIGTG+C+LYLNDEMLKNAIELQLPSYM+GL+FGMTPARSP+SGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 1500

Query: 1456 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF--------------SPTSSPGYSPS 1501
            YH+G+MSP YL SPNLRLSP +DAQFSPYVGGMAF                 SSPGYSP+
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1561
            SPGYSP+SPGYSPTSPGYSPTSP YSP+SPGYSPTSP YSP+SP YSPTSP+YSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
            SPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680

Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
            P+YSPTSP+YSPTSP YSPTSPSYSPTSPSYSPTSPSY+P S                  
Sbjct: 1681 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQS------------------ 1722

Query: 1682 PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY 1741
                             AKYSPSLAYSPSSPRLSP+SPYSPTSPNYSPTS SYSPTSPSY
Sbjct: 1723 -----------------AKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSY 1765

Query: 1742 SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQT-NRDDS 1800
            SPSSPTYSPSSPYN+ G +PDYSPSSPQ+SPS GYSPS PGYSPSSTSQYTPQT ++DD 
Sbjct: 1766 SPSSPTYSPSSPYNS-GVSPDYSPSSPQFSPSTGYSPSQPGYSPSSTSQYTPQTSDKDDG 1824

Query: 1801 TTK 1803
             T+
Sbjct: 1825 GTR 1827


>gi|356496595|ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
            max]
          Length = 1827

 Score = 2922 bits (7574), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1590/1868 (85%), Positives = 1690/1868 (90%), Gaps = 100/1868 (5%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            MD RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPK GGLSDPRLGTI
Sbjct: 1    MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+KTVL+IMR VCFNCSKILADE+DHK
Sbjct: 61   DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            FKQAL+IRNPKNRLKKILDACKNK+KCEGGDEID+PGQD EE +KK++GGCGAQQPK+TI
Sbjct: 121  FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTEESVKKSRGGCGAQQPKITI 180

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EGMKMIAEYKAQRKK+DDQEQLPEPVERKQTL+AERVLGVLKRISDEDCQLLGLNPKYAR
Sbjct: 181  EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240

Query: 241  PDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMILQVLP          +     R  DDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            LLGCRKITKRDTFI KDVFMNILMWWEDFDGKVP P ILKP PLWTGKQVFNLIIPKQIN
Sbjct: 541  LLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600

Query: 591  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
            L R ++WH+++++G +T GDT+VRIEKGELL+GTLCKKTLGT +G LIHVIWEEVGPDAA
Sbjct: 601  LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTYSGGLIHVIWEEVGPDAA 660

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA TMETIN TIS AK  VK LI++A +K L
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAHEKKL 720

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            E EPGR+MM+SFEN+VNQ LN ARD+AG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EAEPGRSMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQNVEGKRIP+GF+DRTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPYGFIDRTLPHFTKDDLGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE Q 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIEKQM 900

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            LDSLKMKK+EFD+ FR+E D+ENW P YML+E ++DLKTI+E R+VF+AEVQKLEADR+Q
Sbjct: 901  LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRFQ 960

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            LATEIAT+GDSS  LPVNLKRLIWNAQKTFKVD RRPSDMHPME+VEA+DKLQERLKVVP
Sbjct: 961  LATEIATTGDSSLFLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            GED LS EAQKNATL FNILLRSTFASKRVL+E+RL+REAFEWV+GEIESRFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+L+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            P V  TKERAK+VQCALEYTTLRSVT+ATEVWYDPDPM TIIEEDV+FVKSYYEMPDE++
Sbjct: 1141 PDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A EKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------------------- 1284
            NDEAPKGE+ DESAEDDVFLKKIESNMLTEM LR                          
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320

Query: 1285 ---------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
                     GVNLLAVMCHEDVD  RTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDVTRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380

Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440

Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
            LRGVTENIMLGQLAPIGTG+C+LYLNDEMLKNAIELQLPSYM+GL+FGMTPARSP+SGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDGLDFGMTPARSPISGTP 1500

Query: 1456 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF--------------SPTSSPGYSPS 1501
            YH+G+MSP YL SPNLRLSP TDAQFSPYVGGMAF                 SSPGYSP+
Sbjct: 1501 YHEGLMSPSYLLSPNLRLSPTTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1561
            SPGYSP+SPGYSPTSP YSP+SPGYSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
            SPTSPSYSPTSP+YSPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTSP+YSPTSP+YSPTS
Sbjct: 1621 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680

Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
            P+YSPTSP+YSPTSP YSPTSPSYSPTSPSYSPTSPSY+P S                  
Sbjct: 1681 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYSPTSPSYNPQS------------------ 1722

Query: 1682 PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY 1741
                             AKYSPSLAYSPSSPRLSP+SPYSPTSPNYSPTS SYSPTSPSY
Sbjct: 1723 -----------------AKYSPSLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSY 1765

Query: 1742 SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDST 1801
            SPSSPTYSPSSPYN+ G +PDYSPSSPQ+SPS GYSPS PGYSPSSTSQYTPQT     +
Sbjct: 1766 SPSSPTYSPSSPYNS-GVSPDYSPSSPQFSPSTGYSPSQPGYSPSSTSQYTPQT-----S 1819

Query: 1802 TKDDKNTK 1809
             KDD+ T+
Sbjct: 1820 DKDDRGTR 1827


>gi|413917378|gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
          Length = 1850

 Score = 2892 bits (7496), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1578/1858 (84%), Positives = 1683/1858 (90%), Gaps = 63/1858 (3%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            MD RFPYSPAEVAKV  VQFGILSPDEIRQMSV+QIEH ET ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVEFVQFGILSPDEIRQMSVIQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DRK+KCETC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMR VCFNCSKILADED+ K
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETK 120

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            FKQALKIRNPKNRLK+I DACK+K  C GGD++DV  QD +EP+KK +GGCGAQQP +T+
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQDTDEPIKK-RGGCGAQQPNITV 179

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            +GMKM+AE+KA +KK DDQ+QLPEPVERKQ L+AERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 180  DGMKMVAEFKAPKKKTDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYAR 239

Query: 241  PDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMILQVLP          +     R  DDLTHQLAMIIRHNENLRRQERNGAPAHII+
Sbjct: 240  PDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIT 299

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 300  EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 359

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 360  TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 419

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            +DGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 420  EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 479

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 480  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 539

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            LLGCRKITKRDT IEKDVFMNILMWW+DFDGK+P PTILKPRP+WTGKQVFNLIIPKQIN
Sbjct: 540  LLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPTILKPRPIWTGKQVFNLIIPKQIN 599

Query: 591  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
            L R +AWH++ +KG +T GDT+VRIEKGELLSGTLCKK+LGT +GSLIHVIWEEVGPDAA
Sbjct: 600  LIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAA 659

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TMETINDTISKAKN VK LIK+A +K L
Sbjct: 660  RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMETINDTISKAKNAVKELIKKAHEKQL 719

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            E EPGRTMMESFEN+VNQVLN ARD+AGSSAQ SLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 720  EAEPGRTMMESFENRVNQVLNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMT 779

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 780  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 839

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ 
Sbjct: 840  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 899

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            LDSLKMKK EFD  FR+E+D+ENW PNYML E++DDLKTI+E R+VF+AEVQKLEADRYQ
Sbjct: 900  LDSLKMKKPEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQ 959

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L +EI T+GD+SWP+PVNLKRLIWNAQKTFK+D RRPSDMHPME+VEA+DKLQERLKVVP
Sbjct: 960  LGSEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVVP 1019

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+D +S+EAQKNATLFFNILLRSTFASKRVLKE+RLT+EAFEWVIGEIESRFLQSLVAPG
Sbjct: 1020 GDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPG 1079

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1080 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1139

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            P VN  KE AKNVQCALEYTTLRSVT ATE+WYDPDP+GTIIEED EFV+SYYEMPDEDI
Sbjct: 1140 PQVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDTEFVQSYYEMPDEDI 1199

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
             P+KISPWLLRIELNREMMVDKKLSMA +AEKIN+EFDDDL+CIFNDDNADKLILRIRI 
Sbjct: 1200 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIRIT 1259

Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG------------------------- 1285
            NDEAPKGE+ DESAEDDVFLKKIE NMLTEMALRG                         
Sbjct: 1260 NDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEGKVNTFYQDDGFKA 1319

Query: 1286 ----------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
                      VNLLAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1320 ANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1379

Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AESD+
Sbjct: 1380 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDH 1439

Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
            LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSY+EGL+FGMTPARSP++GTP
Sbjct: 1440 LRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPITGTP 1499

Query: 1456 YHDGMMSPGYLFSPNLRLSPV-TDAQFSPYVGGMAFSPTSSPGYSPSSPG--------YS 1506
            YH+GMMSP YL SPN+R SP+ TDA FSPYVG MAFSP  SPG    S G        ++
Sbjct: 1500 YHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAFSPFPSPGGYSPSSGGYSPSSPVFT 1559

Query: 1507 PSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSP 1566
            P   GYSP SP YSP SP YSPTSP Y+P SPTYSP+SP YSPTSP YSPTSPSYSPTSP
Sbjct: 1560 PEK-GYSPLSPSYSPASPSYSPTSPSYTPGSPTYSPTSPNYSPTSPTYSPTSPSYSPTSP 1618

Query: 1567 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP YSPTSPAYSPTSPAYSPTSP+YSP
Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSP 1678

Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
            TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP+
Sbjct: 1679 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPS 1738

Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
            YSPTSPSYNP SAKYSPS AYSPSSPR+   SPYS TSP+YSPTS +YSPTSPSYS  SP
Sbjct: 1739 YSPTSPSYNPSSAKYSPSHAYSPSSPRM---SPYSQTSPSYSPTSPTYSPTSPSYSQPSP 1795

Query: 1747 TYSPSSPYNAGGG-NPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTK 1803
            +YSP+SP+N  GG +PDYSP+SP YSPS  YSP+APGYSPSST Q     ++DD + +
Sbjct: 1796 SYSPTSPFNTSGGPSPDYSPTSPNYSPSGSYSPTAPGYSPSSTGQ---GNDKDDKSAR 1850


>gi|242078217|ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
 gi|241940227|gb|EES13372.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
          Length = 1857

 Score = 2889 bits (7490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1580/1865 (84%), Positives = 1690/1865 (90%), Gaps = 70/1865 (3%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            MD RFPYSPAEVAKV +VQFGILSPDEIRQMSVVQIEH ET ERGKPKPGGLSDPRLGTI
Sbjct: 1    MDARFPYSPAEVAKVELVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DRK+KCETC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMR VCFNCSKILADED+ K
Sbjct: 61   DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETK 120

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            FKQALKIRNPKNRLK+I DACK+K  C GGD++DV  QD +EP+KK +GGCGAQQP +T+
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQDTDEPVKK-RGGCGAQQPNITV 179

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            +GMKM+AE+KA +KK+DDQ+QLPEPVERKQ L+AERVL VLKRISDEDC LLGLNPKYAR
Sbjct: 180  DGMKMVAEFKAPKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYAR 239

Query: 241  PDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMILQVLP          +     R  DDLTHQLAMIIRHNENLRRQERNGAPAHII+
Sbjct: 240  PDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIT 299

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 300  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 359

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 360  TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 419

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            +DGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 420  EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 479

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT
Sbjct: 480  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 539

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            LLGCRKITKRDT IEKDVFMNILMWW+DFDGK+P P ILKPRP+WTGKQVFNLIIPKQIN
Sbjct: 540  LLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQIN 599

Query: 591  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
            L R +AWH++ +KG +T GDT+VRIEKGELLSGTLCKK+LGT TGSLIH+IWEEVGPDAA
Sbjct: 600  LIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGTGTGSLIHIIWEEVGPDAA 659

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            RKFLGHTQWLVNYWLLQN FSIGIGDTIADA TM+TINDTI KAK+ VK LIK+A +K L
Sbjct: 660  RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMQTINDTICKAKDEVKELIKKAHEKQL 719

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            E EPGRTMMESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 720  EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 779

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 780  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 839

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ 
Sbjct: 840  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 899

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            LDSLKMKK EFD  FR+E+D+ENW PNYML E++DDLKTI+E R+VF+AEVQKLEADRYQ
Sbjct: 900  LDSLKMKKPEFDNLFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQ 959

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L TEIAT+GD+SWP+PVNLKRLIWNAQKTF++D RRPSDMHPME+VEAVDKLQERLKVVP
Sbjct: 960  LGTEIATTGDNSWPMPVNLKRLIWNAQKTFRIDFRRPSDMHPMEIVEAVDKLQERLKVVP 1019

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DP+S+EAQKNATLFFNILLRSTFASKRVLKE+RLT+EAFEWVIGEIESRFLQSLVAPG
Sbjct: 1020 GDDPMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPG 1079

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1080 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1139

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            P VN  KE AKNVQCALEYTTLRSVT ATE+WYDPDP+GTIIEED EFV+SYYEMPDEDI
Sbjct: 1140 PEVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDI 1199

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
             P+KISPWLLRIELNREMMVDKKLSMA +A+KIN+EFDDDL+CIFNDDNADKLILRIRI 
Sbjct: 1200 DPDKISPWLLRIELNREMMVDKKLSMADIADKINREFDDDLSCIFNDDNADKLILRIRIT 1259

Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG------------------------- 1285
            NDEAPKGE+ DESAEDDVFLKKIE NMLTEMALRG                         
Sbjct: 1260 NDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEGKVNTFYQDEGFKA 1319

Query: 1286 ----------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
                      VNLLAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1320 ANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1379

Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AESD+
Sbjct: 1380 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDH 1439

Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
            LRGVTENIMLGQLAPIGTG C+LYLND+ML+ AIELQLPSY+EGL+FGMTPARSP+SGTP
Sbjct: 1440 LRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGTP 1499

Query: 1456 YHDGMMSPGYLFSPNLRLSPV-TDAQFSPYVGGMAFSPTSSPG---------------YS 1499
            YH+GMMSP YL SPN+R SP+ TDA FSPYVG MAFSP  SPG               ++
Sbjct: 1500 YHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAFSPFPSPGGYSPSSGGYSPSSPVFT 1559

Query: 1500 PSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP 1559
            P   GYSP SP YSP SP YSPTSP Y+P SP YSPTSP YSP+SP YSPTSP+YSPTSP
Sbjct: 1560 PEK-GYSPLSPSYSPASPSYSPTSPSYTPGSPTYSPTSPNYSPTSPTYSPTSPSYSPTSP 1618

Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP 1619
            SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP YSPTSP+YSPTSPAYSPTSP+YSP
Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSP 1678

Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
            TSP+YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS
Sbjct: 1679 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1738

Query: 1680 YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
            YSPTSP+YSPTSPSYNP SAKYSPS AYSPSSPR+   +PYS TSP+YSPTS +YSPTSP
Sbjct: 1739 YSPTSPSYSPTSPSYNPSSAKYSPSHAYSPSSPRM---TPYSQTSPSYSPTSPTYSPTSP 1795

Query: 1740 SYSPSSPTYSPSSPYNAGGG-NPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRD 1798
            SYS  SP+YSP+SP+N  GG +PDYSP+SP YSPS  YSP+APGYSPSST Q     ++D
Sbjct: 1796 SYSQPSPSYSPTSPFNTSGGPSPDYSPTSPNYSPSGSYSPTAPGYSPSSTGQ---GNDKD 1852

Query: 1799 DSTTK 1803
            D + +
Sbjct: 1853 DESNR 1857


>gi|297603848|ref|NP_001054670.2| Os05g0151000 [Oryza sativa Japonica Group]
 gi|222630225|gb|EEE62357.1| hypothetical protein OsJ_17146 [Oryza sativa Japonica Group]
 gi|255676030|dbj|BAF16584.2| Os05g0151000 [Oryza sativa Japonica Group]
          Length = 1834

 Score = 2860 bits (7413), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1378/1658 (83%), Positives = 1477/1658 (89%), Gaps = 51/1658 (3%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRK 63
            RFPYSPAEVAKV  VQFG+LSPDEIRQMSVV IEH ET E+GKPKPGGLSDPR+GTIDRK
Sbjct: 5    RFPYSPAEVAKVEAVQFGVLSPDEIRQMSVVHIEHAETMEKGKPKPGGLSDPRMGTIDRK 64

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
            +KCETC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMR VCFNCSKILADEDD KFKQ
Sbjct: 65   IKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDIKFKQ 124

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
            ALKIRNPKN+LK+I DACKN+  C GGD +DV  Q G +   K +GGCGAQQP +T++GM
Sbjct: 125  ALKIRNPKNKLKRIYDACKNRKICAGGDNLDVQEQQGTDDPVKKRGGCGAQQPNITVDGM 184

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
            KM+AEYKA +KKNDDQEQLPEPV+RKQ L+AERVL VLK ISDEDC LLGLNPK+ARPDW
Sbjct: 185  KMVAEYKAPKKKNDDQEQLPEPVDRKQILSAERVLNVLKHISDEDCLLLGLNPKFARPDW 244

Query: 244  MILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            MILQVLP          +     R  DDLTHQLAMIIRHNENLRRQERNGAPAHII+EFA
Sbjct: 245  MILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFA 304

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
            QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI
Sbjct: 305  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 364

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            TPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DG
Sbjct: 365  TPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDG 424

Query: 414  QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
            QRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL
Sbjct: 425  QRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 484

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG
Sbjct: 485  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 544

Query: 534  CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
            CRKITKRDT IEKDVFMNILMWWEDFDGKVP P ILKPRP+WTGKQVFNLIIPKQINL R
Sbjct: 545  CRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKQINLIR 604

Query: 594  TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
             + WH++ +   +T GDT+VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF
Sbjct: 605  FSGWHSEAETRFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 664

Query: 654  LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
            LGHTQWLVNYWLLQN FSIGIGDTIADA TME IN+TISKAKN+VK LIKQ +D  LE E
Sbjct: 665  LGHTQWLVNYWLLQNGFSIGIGDTIADAATMENINETISKAKNDVKKLIKQFRDNQLEAE 724

Query: 714  PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
             GRT MESFEN+VN+VLN ARD AGSSA+KSLSESNNLKAM TAGSKG+FINISQMTACV
Sbjct: 725  AGRTTMESFENRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQMTACV 784

Query: 774  GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
            GQQNVEGKRIPFGF +RTLPHFTK+DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI
Sbjct: 785  GQQNVEGKRIPFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 844

Query: 834  DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDS 893
            DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD++WIESQ LDS
Sbjct: 845  DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDS 904

Query: 894  LKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLAT 953
            LKMKK+EFD  FR+E+D+ENW PNY+  ++ +DLKTI E+R+VF+AEVQKLEADR+QL T
Sbjct: 905  LKMKKAEFDNVFRYELDDENWKPNYLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGT 964

Query: 954  EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
            EIAT+GD++WP+PVNLKRLIWNAQKTFK+D RRPSDMHPME+V+A+DKLQERLKVVPG+D
Sbjct: 965  EIATTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDD 1024

Query: 1014 PLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
             +S+EAQKNATLFFNILLRSTFASKRVLKE+RLT+EAFEWVIGEIESRFLQSLVAPGEMI
Sbjct: 1025 DISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMI 1084

Query: 1074 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGV 1133
            GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK IKTPSLSV LKP V
Sbjct: 1085 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLKPEV 1144

Query: 1134 NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE 1193
            N  KE AKNVQCALEYTTLRSVT ATE+WYDPDP+GTIIEED EFV+SYYEMPDEDI P+
Sbjct: 1145 NKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDIDPD 1204

Query: 1194 KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDE 1253
            KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDL+CIFNDDNADKLILR+RI NDE
Sbjct: 1205 KISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRITNDE 1264

Query: 1254 APKGELNDESAEDDVFLKKIESNMLTEMALRG---------------------------- 1285
            A KGE+ DE  EDDVFLKKIESNMLTEMALRG                            
Sbjct: 1265 AQKGEIQDEYGEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNKFEDNDGFKTEKG 1324

Query: 1286 -------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYV 1338
                   VNLLAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDGSYV
Sbjct: 1325 WMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYV 1384

Query: 1339 NYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRG 1398
            NYRHLA+LCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AESD LRG
Sbjct: 1385 NYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDPLRG 1444

Query: 1399 VTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFG-MTPARSPVSGTPYH 1457
            V+ENIMLGQLAPIGTG C LYLND+MLK AIELQLPSY+EGL+FG MT A SP+SGTPYH
Sbjct: 1445 VSENIMLGQLAPIGTGGCDLYLNDQMLKQAIELQLPSYVEGLDFGMMTSACSPISGTPYH 1504

Query: 1458 DGMMSPGYLFSPNLRLSP-VTDAQFSPYVGGMAFSPTSSPG-YSPSS-PGYSPSSPGYSP 1514
             GMMSP YL SP++R SP   DAQFSPYVGGMAFSP SSPG Y+PSS  GYSPS P  +P
Sbjct: 1505 QGMMSPSYLLSPDIRASPTAADAQFSPYVGGMAFSPVSSPGNYTPSSGGGYSPSPPVCTP 1564

Query: 1515 TSPGYSPTSPGYSPTSPGYSPTSPTYSP-SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP 1573
                ++ +SP Y+P SP YSP SP   P +SP Y PTS  +SPTSP YS TSP YSP+SP
Sbjct: 1565 GPGSFTSSSP-YNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSPSSP 1623

Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
             YSPTS SYSPTSP YSPTSP Y+PTS +YSPTSP+Y+
Sbjct: 1624 IYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSPTSPSYN 1661



 Score =  115 bits (289), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 90/132 (68%), Gaps = 12/132 (9%)

Query: 1616 AYSPTSP--AYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP-TSP 1671
            A+SP S    Y+P+S   YSP+ P  +P   S++ +SP Y+P SP YSP SP   P TSP
Sbjct: 1537 AFSPVSSPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSP-YNPVSPFYSPASPLSCPLTSP 1595

Query: 1672 GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP-SLAYSPSSPRLSPASPYSPTSPNYSPT 1730
             Y PTS  +SPTSP YS TSP Y+P S  YSP SL+YSP+SP       YSPTSP Y+PT
Sbjct: 1596 SYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSP------VYSPTSPVYNPT 1649

Query: 1731 SSSYSPTSPSYS 1742
            SS+YSPTSPSY+
Sbjct: 1650 SSAYSPTSPSYN 1661



 Score = 96.7 bits (239), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 85/134 (63%), Gaps = 15/134 (11%)

Query: 1644 SYSPTSP--SYSPTSPS-YSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP-QSA 1699
            ++SP S   +Y+P+S   YSP+ P  +P    ++ +SP Y+P SP YSP SP   P  S 
Sbjct: 1537 AFSPVSSPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSP-YNPVSPFYSPASPLSCPLTSP 1595

Query: 1700 KYSP-SLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAG 1757
             Y P SL +SP+SP  S  SP YSP+SP YSPTS SYSPTSP YSP+SP Y+P+S     
Sbjct: 1596 SYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSA--- 1652

Query: 1758 GGNPDYSPSSPQYS 1771
                 YSP+SP Y+
Sbjct: 1653 -----YSPTSPSYN 1661


>gi|297798336|ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297312888|gb|EFH43311.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1839

 Score = 2859 bits (7412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1466/1839 (79%), Positives = 1574/1839 (85%), Gaps = 149/1839 (8%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            MDTRFP+SPAEV+KVR+VQFGILSPDEIRQMSV+ +EH ETTE+GKPK GGLSD RLGTI
Sbjct: 1    MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDIRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DRK+KCETC ANMAECPGHFGHLELAKPM+H+GFMKTVLSIMR VCFNCSKILADE    
Sbjct: 61   DRKVKCETCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEVCRN 120

Query: 121  F-KQALKIRNPKNRLKKILDACKNKTKCEGGDEID-VPGQDGEEPLKKNKGGCGAQQPKL 178
              +QA+KI+NPKNRLKKILDACKNKTKCEGGD+ID V  QD +EP+KK++GGCGAQQPKL
Sbjct: 121  LSRQAMKIKNPKNRLKKILDACKNKTKCEGGDDIDDVQNQDTDEPVKKSRGGCGAQQPKL 180

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
            TIEGMKMIAEYK  RKKND+ +QLPEP ERKQTL A+RVL VLKRISDEDCQLLG NPK+
Sbjct: 181  TIEGMKMIAEYKIPRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDEDCQLLGFNPKF 240

Query: 239  ARPDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARPDWMIL+VLP          +     R  DDLTHQLAMIIRHNENL+RQE+NGAPAHI
Sbjct: 241  ARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHI 300

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ISEF QLLQFHIATYFDNELPGQPRATQ+SGRPIKSICSRLKAKEGRIRGNLMGKRVDFS
Sbjct: 301  ISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 360

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERL+ELV+YGPHPPPGKTGAKYI
Sbjct: 361  ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLQELVDYGPHPPPGKTGAKYI 420

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IRDDGQRLDLRYLKKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRI+IMPY
Sbjct: 421  IRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPY 480

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQ
Sbjct: 481  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQ 540

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTLLGCRKITKRDTFIEKDVFMN LMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQ
Sbjct: 541  DTLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQ 600

Query: 589  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            INL R +AWHAD + G +T GDT VRIE+GELL+GTLCKKTLGTS GSL+HVIWEEVGPD
Sbjct: 601  INLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPD 660

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
            AARKFLGHTQWLVNYWLLQN F+IGIGDTIAD+ TME IN+TIS AK  VK+LI+Q Q+K
Sbjct: 661  AARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQEK 720

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             L+PEPGRTM E+FEN+VNQVLN ARD+AGSSAQKSL+E+NNLKAMVTAGSKGSFINISQ
Sbjct: 721  KLDPEPGRTMTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQ 780

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            MTACVGQQNVEGKRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG
Sbjct: 781  MTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 840

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIES
Sbjct: 841  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIES 900

Query: 889  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
            Q LDSLKMKKSEFD+ F++E+D+ENWNP Y+  E+++DLK I+ELRDVFDAE  KLE DR
Sbjct: 901  QKLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDR 960

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
            +QL TEIAT+GDS+WPLPVN+KR IWNAQKTFK+D R+ SDMHP+E+V+AVDKLQERL V
Sbjct: 961  FQLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLV 1020

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            VPG+D LSVEAQKNATLFFNILLRST ASKRVL+E++L+REAFEWVIGEIESRFLQSLVA
Sbjct: 1021 VPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVA 1080

Query: 1069 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1128
            PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSV+
Sbjct: 1081 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVY 1140

Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1188
            L P  + +KE AK VQCALEYTTLRSVT+ATEVWYDPDPM TIIEED EFV+SYYEMPDE
Sbjct: 1141 LTPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDE 1200

Query: 1189 DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
            D++P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA KLILRIR
Sbjct: 1201 DVSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIR 1260

Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG----------------------- 1285
            IMNDE PKGEL DESAEDDVFLKKIESNMLTEMALRG                       
Sbjct: 1261 IMNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGF 1320

Query: 1286 ------------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
                        VNLLAVMCHEDVD +RTTSNHLIEIIEVLGIEAVRRALLDELRVVISF
Sbjct: 1321 KTSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1380

Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
            DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA +AE+
Sbjct: 1381 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAET 1440

Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSG 1453
            D LRGVTENIMLGQLAPIGTGDC LYLNDEMLKNAIELQLPSYM+GLEFGMTPARSPVSG
Sbjct: 1441 DCLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSG 1500

Query: 1454 TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYS 1513
            TPYH+GMMSP YL SPN+RLSP++DAQFSPYVGGMAFSP+SSPGYSPSSPGYSP+SPGYS
Sbjct: 1501 TPYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYS 1560

Query: 1514 PTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP--------------------- 1552
            PTSPGYSPTSPGYSPTSP       TYSPSSPGYSPTSP                     
Sbjct: 1561 PTSPGYSPTSPGYSPTSP-------TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP 1613

Query: 1553 ----------------------------AYSPTSPSYSPTSP------------------ 1566
                                        AYSPTSP+YSPTSP                  
Sbjct: 1614 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1673

Query: 1567 ------------------------SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
                                    +YSPTSP YSPTSPSYSPTSPSY PTSPSY+P S  
Sbjct: 1674 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAK 1733

Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
            YSP S AYSP++   SP SP YSPTSP+YSPTSPSYSPTSPSYSP+SP+YSP+SP  S  
Sbjct: 1734 YSP-SIAYSPSNARLSPASP-YSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGA 1791

Query: 1663 SPAYSPTSPGYSPTSPSYSPTSP-TYSPTSPSYNPQSAK 1700
            SP YSP S GYSPT P YSP+S   Y+P     N ++ K
Sbjct: 1792 SPDYSP-SAGYSPTLPGYSPSSTGQYTPHEGEKNAKTGK 1829


>gi|242071129|ref|XP_002450841.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
 gi|241936684|gb|EES09829.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
          Length = 1874

 Score = 2793 bits (7239), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1419/1893 (74%), Positives = 1552/1893 (81%), Gaps = 132/1893 (6%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            MD RFP+SPAEVAKV +VQFGILSPDEIRQMSV QIE+ ET E+GKPK GGLSDPR+GT+
Sbjct: 1    MDVRFPHSPAEVAKVELVQFGILSPDEIRQMSVAQIEYAETMEKGKPKAGGLSDPRMGTV 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DRK+KC+TC + MAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKIL DED+ K
Sbjct: 61   DRKIKCQTCMSGMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILVDEDNTK 120

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            FKQALKIRNPKNRLK+I DACK K  C  GD++DV  Q   +     +GGCGAQQP +T+
Sbjct: 121  FKQALKIRNPKNRLKRIYDACKTKKVCGEGDDLDVQQQQDTDEHVNRRGGCGAQQPIITV 180

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            +G+KM+ E+KA +KKNDDQEQL E VE KQ L+AERVL VLK ISD++  LLGL+PK AR
Sbjct: 181  DGVKMLVEFKAPKKKNDDQEQLSELVEPKQILSAERVLNVLKNISDKESLLLGLHPKLAR 240

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMILQVLPIPPPPVRPS          DDLTHQLAMIIRHNENLRRQERNGAPAHII 
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMGTSSKSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIE 300

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            EF+QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGR+RGNLMGKRVDFSAR
Sbjct: 301  EFSQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRVRGNLMGKRVDFSAR 360

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP INID++GVPWSIALNLTYPETVTPYNIERLKELV  GPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPNINIDEVGVPWSIALNLTYPETVTPYNIERLKELVLNGPHPPPGKTGAKYIIR 420

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            +DGQRLDLRY+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421  EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN+PVMGIVQDT
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNKPVMGIVQDT 540

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            LLGCRKITKRDT IEKDVFMNILMWWEDFDGK+P P ILKPRP+WTGKQVFNLIIP+QIN
Sbjct: 541  LLGCRKITKRDTLIEKDVFMNILMWWEDFDGKIPAPAILKPRPIWTGKQVFNLIIPRQIN 600

Query: 591  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
            L R  +WH+D +KG +T  DT+VRIEKGELLSGTLCKKTLGT +GSLIH+IWEEVGPDAA
Sbjct: 601  LIRFCSWHSDEEKGFVTPSDTVVRIEKGELLSGTLCKKTLGTGSGSLIHIIWEEVGPDAA 660

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            RKFLG+TQWLVNYWLLQN FSIGIGD IADA TM  IN  IS AK+ VK LIKQA+D+ L
Sbjct: 661  RKFLGYTQWLVNYWLLQNGFSIGIGDMIADAATMADINKAISGAKDCVKKLIKQARDEQL 720

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            + EPG TMMESFENKVN+ LN ARD  GS+ Q +LSESNNLKAMV+AGSKGSFINISQM 
Sbjct: 721  KAEPGHTMMESFENKVNEALNKARDNVGSNVQNNLSESNNLKAMVSAGSKGSFINISQMA 780

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQN+EGKRIPFGF DRTLPHFTKDDYGPESRGFVENSYL+GLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNIEGKRIPFGFSDRTLPHFTKDDYGPESRGFVENSYLQGLTPQEFFFHAMGGRE 840

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV+QF+YGEDGMD+VWIE Q 
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVVQFIYGEDGMDAVWIEEQN 900

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            LDSLKMKK EFD  FR+E+D+ENW PNY+L  + DDLKTI E R V +AEV KLEADR+Q
Sbjct: 901  LDSLKMKKEEFDTVFRYELDDENWRPNYLLPVHFDDLKTISEFRSVLEAEVHKLEADRFQ 960

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L TEIAT+G  +WPLPVNLKRLIWNAQKTFK+D R  SDMHP+E+VEA+DKLQERLKVVP
Sbjct: 961  LGTEIATNGSHTWPLPVNLKRLIWNAQKTFKIDIRTCSDMHPIEIVEAIDKLQERLKVVP 1020

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+D +S+EAQKNATLFFNI LR+TFASKRVL+E+RLTREAFEW+I EI  RF QSLVAP 
Sbjct: 1021 GDDAISIEAQKNATLFFNIHLRATFASKRVLREYRLTREAFEWIIDEIVWRFSQSLVAPS 1080

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EMIGCVAAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            P VN TKE AK+VQCALEYTTLRSVT ATEVWYDPDPMGTIIEED+EFV SYYEMPDEDI
Sbjct: 1141 PEVNKTKELAKSVQCALEYTTLRSVTHATEVWYDPDPMGTIIEEDLEFVLSYYEMPDEDI 1200

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
             P+KISPWLLRIELNREMMVDKKLSMA +A +IN+EFD DL+CIF+DDNADKLILR+RI+
Sbjct: 1201 DPDKISPWLLRIELNREMMVDKKLSMADIANEINREFDGDLSCIFSDDNADKLILRLRII 1260

Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG------------------------- 1285
            NDEA +GE+ D+SA D+VFLKKIESNML EM+LRG                         
Sbjct: 1261 NDEASRGEILDDSAGDEVFLKKIESNMLAEMSLRGIPDINKVFIKEVKVNKFDVSDGFKE 1320

Query: 1286 ----------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
                      VNLLAVMCHEDVDA RTTSNHL E+IEVLGIEAVRRALLDELR VISFDG
Sbjct: 1321 HKEWMLDTDGVNLLAVMCHEDVDATRTTSNHLTEVIEVLGIEAVRRALLDELRSVISFDG 1380

Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
            SYVNYRHLA+LCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV AESDY
Sbjct: 1381 SYVNYRHLAVLCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVHAESDY 1440

Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
            LRGVTENIMLGQLAPIGTG CSL+LND+ML+ AIELQLPSY++GL+FG+T A SP+S   
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCSLFLNDQMLQQAIELQLPSYVDGLDFGITSAPSPLSSPL 1500

Query: 1456 ----YHDGMMSPGYLFSPNLRLSPV-TDAQFSPYVGGMAFSPTSSPGYSPSSPGYSP--- 1507
                YH+G+MS  +L SP+ R SP+ T A FSPYV  M+ SP       PS  GYSP   
Sbjct: 1501 SGSSYHEGLMSSSHLLSPDFRHSPIDTYASFSPYVRDMSLSPV------PSQGGYSPIPR 1554

Query: 1508 SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
            S  GYSP             P S  Y   SP Y+P    Y+  SP  + TS SY+P SP 
Sbjct: 1555 SESGYSPI------------PRSVRYMAVSPIYTP----YNAASPVNASTSTSYTPVSPV 1598

Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS---------------- 1611
            YSPT+P Y+P SP YSPT+P  S    SYS  SP Y+P SP  S                
Sbjct: 1599 YSPTTPVYTPMSPVYSPTTPVSSQIQ-SYSSASPIYNPISPNSSRYNPSSPSFSPTSTSP 1657

Query: 1612 ---PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---- 1664
               P S +YSPTSP YSPTSPSYSP S SYSPTSP YSPTSPSYSP S SYSPTSP    
Sbjct: 1658 SYSPASASYSPTSPFYSPTSPSYSPASLSYSPTSPFYSPTSPSYSPASLSYSPTSPFYSP 1717

Query: 1665 ------------------------AYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAK 1700
                                     YSPTSPGYSPTSP+YSPTSP YSPTSPSYN    +
Sbjct: 1718 TSPSYSPSSPSYSPTSPTYSPTSLGYSPTSPGYSPTSPTYSPTSPNYSPTSPSYNLSYTE 1777

Query: 1701 YSPSLAYSPSSPRL---SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAG 1757
            Y+ S  YSP+ PR+   S A  YSPTSP YSPTS SYS  S SYSP+ PT       ++G
Sbjct: 1778 YNSSNTYSPTRPRITLDSQAPDYSPTSPTYSPTSPSYSLPSLSYSPNRPT------DDSG 1831

Query: 1758 GGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
              +PDYSP+SP +SP+   SP+A  YSPSST Q
Sbjct: 1832 RPSPDYSPTSPNFSPNRSDSPTAADYSPSSTGQ 1864



 Score =  112 bits (281), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/241 (41%), Positives = 129/241 (53%), Gaps = 43/241 (17%)

Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
            +Y+  SP     S S  P+   YSP   + S  SP   P S  Y   SP Y+P    Y+ 
Sbjct: 1527 TYASFSPYVRDMSLSPVPSQGGYSPIPRSESGYSPI--PRSVRYMAVSPIYTP----YNA 1580

Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP------TYSPTSPSYNPQSAKY 1701
             SP  + TS SY+P SP YSPT+P Y+P SP YSPT+P      +YS  SP YNP S   
Sbjct: 1581 ASPVNASTSTSYTPVSPVYSPTTPVYTPMSPVYSPTTPVSSQIQSYSSASPIYNPISPNS 1640

Query: 1702 SPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNP 1761
            S     SPS    S +  YSP S +YSPTS  YSPTSPSYSP+S +YSP+SP+ +   +P
Sbjct: 1641 SRYNPSSPSFSPTSTSPSYSPASASYSPTSPFYSPTSPSYSPASLSYSPTSPFYS-PTSP 1699

Query: 1762 DYSPSSPQYSPSA-----------------------------GYSPSAPGYSPSSTSQYT 1792
             YSP+S  YSP++                             GYSP++PGYSP+S + Y+
Sbjct: 1700 SYSPASLSYSPTSPFYSPTSPSYSPSSPSYSPTSPTYSPTSLGYSPTSPGYSPTSPT-YS 1758

Query: 1793 P 1793
            P
Sbjct: 1759 P 1759


>gi|54291834|gb|AAV32202.1| putative RNA polymerase II [Oryza sativa Japonica Group]
          Length = 1741

 Score = 2788 bits (7228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1347/1648 (81%), Positives = 1444/1648 (87%), Gaps = 84/1648 (5%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRK 63
            RFPYSPAEVAKV  VQFG+LSPDEIRQMSVV IEH ET E+GKPKPGGLSDPR+GTIDRK
Sbjct: 5    RFPYSPAEVAKVEAVQFGVLSPDEIRQMSVVHIEHAETMEKGKPKPGGLSDPRMGTIDRK 64

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
            +KCETC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMR VCFNCSKILADEDD KFKQ
Sbjct: 65   IKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDIKFKQ 124

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
            ALKIRNPKN+LK+I DACKN+  C GGD +DV  Q G +   K +GGCGAQQP +T++GM
Sbjct: 125  ALKIRNPKNKLKRIYDACKNRKICAGGDNLDVQEQQGTDDPVKKRGGCGAQQPNITVDGM 184

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
            KM+AEYKA +KKNDDQEQLPEPV+RKQ L+AER                           
Sbjct: 185  KMVAEYKAPKKKNDDQEQLPEPVDRKQILSAER--------------------------- 217

Query: 244  MILQVLPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                            DDLTHQLAMIIRHNENLRRQERNGAPAHII+EFAQLLQFHIATY
Sbjct: 218  ----------------DDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATY 261

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
            FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INID+
Sbjct: 262  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDE 321

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRY+KK
Sbjct: 322  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKK 381

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            SSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA
Sbjct: 382  SSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 441

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 
Sbjct: 442  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTL 501

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            IEKDVFMNILMWWEDFDGKVP P ILKPRP+WTGKQVFNLIIPKQINL R + WH++ + 
Sbjct: 502  IEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKQINLIRFSGWHSEAET 561

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
              +T GDT+VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY
Sbjct: 562  RFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 621

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            WLLQN FSIGIGDTIADA TME IN+TISKAKN+VK LIKQ +D  LE E GRT MESFE
Sbjct: 622  WLLQNGFSIGIGDTIADAATMENINETISKAKNDVKKLIKQFRDNQLEAEAGRTTMESFE 681

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
            N+VN+VLN ARD AGSSA+KSLSESNNLKAM TAGSKG+FINISQMTACVGQQNVEGKRI
Sbjct: 682  NRVNEVLNKARDVAGSSAEKSLSESNNLKAMATAGSKGTFINISQMTACVGQQNVEGKRI 741

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
            PFGF +RTLPHFTK+DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG
Sbjct: 742  PFGFTNRTLPHFTKNDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 801

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD++WIESQ LDSLKMKK+EFD 
Sbjct: 802  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKAEFDN 861

Query: 904  AFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
             FR+E+D+ENW PNY+  ++ +DLKTI E+R+VF+AEVQKLEADR+QL TEIAT+GD++W
Sbjct: 862  VFRYELDDENWKPNYLSTQHAEDLKTISEIRNVFEAEVQKLEADRFQLGTEIATTGDNTW 921

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNA 1023
            P+PVNLKRLIWNAQKTFK+D RRPSDMHPME+V+A+DKLQERLKVVPG+D +S+EAQKNA
Sbjct: 922  PMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVDAIDKLQERLKVVPGDDDISIEAQKNA 981

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGE 1083
            TLFFNILLRSTFASKRVLKE+RLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGE
Sbjct: 982  TLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGE 1041

Query: 1084 PATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNV 1143
            PATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK IKTPSLSV LKP VN  KE AKNV
Sbjct: 1042 PATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKNIKTPSLSVHLKPEVNKKKELAKNV 1101

Query: 1144 QCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIE 1203
            QCALEYTTLRSVT ATE+WYDPDP+GTIIEED EFV+SYYEMPDEDI P+KISPWLLRIE
Sbjct: 1102 QCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDIDPDKISPWLLRIE 1161

Query: 1204 LNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES 1263
            LNREMMVDKKLSMA +AEKIN EFDDDL+CIFNDDNADKLILR+RI NDEA KGE+ DE 
Sbjct: 1162 LNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRITNDEAQKGEIQDEY 1221

Query: 1264 AEDDVFLKKIESNMLTEMALRG-----------------------------------VNL 1288
             EDDVFLKKIESNMLTEMALRG                                   VNL
Sbjct: 1222 GEDDVFLKKIESNMLTEMALRGIPGINKVFIKEGNVNKFEDNDGFKTEKGWMLDTEGVNL 1281

Query: 1289 LAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCD 1348
            LAVMCHEDVDA RTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA+LCD
Sbjct: 1282 LAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAVLCD 1341

Query: 1349 TMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQL 1408
            TMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AESD LRGV+ENIMLGQL
Sbjct: 1342 TMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDPLRGVSENIMLGQL 1401

Query: 1409 APIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFG-MTPARSPVSGTPYHDGMMSPGYLF 1467
            APIGTG C LYLND+MLK AIELQLPSY+EGL+FG MT A SP+SGTPYH GMMSP YL 
Sbjct: 1402 APIGTGGCDLYLNDQMLKQAIELQLPSYVEGLDFGMMTSACSPISGTPYHQGMMSPSYLL 1461

Query: 1468 SPNLRLSP-VTDAQFSPYVGGMAFSPTSSPG-YSPSS-PGYSPSSPGYSPTSPGYSPTSP 1524
            SP++R SP   DAQFSPYVGGMAFSP SSPG Y+PSS  GYSPS P  +P    ++ +SP
Sbjct: 1462 SPDIRASPTAADAQFSPYVGGMAFSPVSSPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSP 1521

Query: 1525 GYSPTSPGYSPTSPTYSP-SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1583
             Y+P SP YSP SP   P +SP Y PTS  +SPTSP YS TSP YSP+SP YSPTS SYS
Sbjct: 1522 -YNPVSPFYSPASPLSCPLTSPSYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYS 1580

Query: 1584 PTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
            PTSP YSPTSP Y+PTS +YSPTSP+Y+
Sbjct: 1581 PTSPVYSPTSPVYNPTSSAYSPTSPSYN 1608



 Score =  115 bits (289), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 84/121 (69%), Gaps = 12/121 (9%)

Query: 1595 SYSPTSP--SYSPTSPA-YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP--------TSP 1643
            ++SP S   +Y+P+S   YSP+ P  +P   +++ +SP Y+P SP YSP        TSP
Sbjct: 1484 AFSPVSSPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSP-YNPVSPFYSPASPLSCPLTSP 1542

Query: 1644 SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP 1703
            SY PTS  +SPTSP YS TSP YSP+SP YSPTS SYSPTSP YSPTSP YNP S+ YSP
Sbjct: 1543 SYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSAYSP 1602

Query: 1704 S 1704
            +
Sbjct: 1603 T 1603



 Score =  115 bits (287), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/132 (56%), Positives = 90/132 (68%), Gaps = 12/132 (9%)

Query: 1616 AYSPTSP--AYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP-TSP 1671
            A+SP S    Y+P+S   YSP+ P  +P   S++ +SP Y+P SP YSP SP   P TSP
Sbjct: 1484 AFSPVSSPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSP-YNPVSPFYSPASPLSCPLTSP 1542

Query: 1672 GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP-SLAYSPSSPRLSPASPYSPTSPNYSPT 1730
             Y PTS  +SPTSP YS TSP Y+P S  YSP SL+YSP+SP       YSPTSP Y+PT
Sbjct: 1543 SYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSP------VYSPTSPVYNPT 1596

Query: 1731 SSSYSPTSPSYS 1742
            SS+YSPTSPSY+
Sbjct: 1597 SSAYSPTSPSYN 1608



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 85/134 (63%), Gaps = 15/134 (11%)

Query: 1644 SYSPTSP--SYSPTSPS-YSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP-QSA 1699
            ++SP S   +Y+P+S   YSP+ P  +P    ++ +SP Y+P SP YSP SP   P  S 
Sbjct: 1484 AFSPVSSPGNYTPSSGGGYSPSPPVCTPGPGSFTSSSP-YNPVSPFYSPASPLSCPLTSP 1542

Query: 1700 KYSP-SLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAG 1757
             Y P SL +SP+SP  S  SP YSP+SP YSPTS SYSPTSP YSP+SP Y+P+S     
Sbjct: 1543 SYVPTSLPHSPTSPIYSATSPIYSPSSPIYSPTSLSYSPTSPVYSPTSPVYNPTSSA--- 1599

Query: 1758 GGNPDYSPSSPQYS 1771
                 YSP+SP Y+
Sbjct: 1600 -----YSPTSPSYN 1608


>gi|168066799|ref|XP_001785319.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663074|gb|EDQ49860.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1742

 Score = 2716 bits (7040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1366/1693 (80%), Positives = 1513/1693 (89%), Gaps = 62/1693 (3%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            MD RF +SPA++A+V+ VQFGILSPDEIRQM+V +IE  ET +RGKPK GGLSDPRLGTI
Sbjct: 1    MDQRFAFSPADLARVKTVQFGILSPDEIRQMAVCKIESSETYDRGKPKIGGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DR  KCETC  +M ECPGHFG+LELAKPMFHIGF+KTVLSI+R VC+NCS+ LADE+DH+
Sbjct: 61   DRHTKCETCAGSMTECPGHFGYLELAKPMFHIGFLKTVLSILRCVCYNCSRCLADEEDHR 120

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKGGCGAQQP 176
            FKQA K+RNPK+RLKK+LD CK+KTKC+ GD+ID    + G++ E+  KK+ GGCGAQQP
Sbjct: 121  FKQAKKVRNPKHRLKKVLDCCKSKTKCDTGDDIDENDVMNGEENEK--KKSHGGCGAQQP 178

Query: 177  KLTIEGMKMIAEYKAQRKKNDDQEQ-LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            K++I+GMK++AE+K  RKK ++ EQ +PEPVERKQ L+AE+VL +LKRISDE+C LLGLN
Sbjct: 179  KISIDGMKIVAEFKPSRKKGEEPEQHMPEPVERKQQLSAEKVLSILKRISDEECTLLGLN 238

Query: 236  PKYARPDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            PKYARPDWMILQVLP          +     R  DDLTHQLAMIIRHN NL+RQE+NGAP
Sbjct: 239  PKYARPDWMILQVLPIPPPPVRPSVMMDSSARSEDDLTHQLAMIIRHNNNLKRQEQNGAP 298

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HII+EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSIC RLKAKEGRIRGNLMGKRV
Sbjct: 299  THIINEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICQRLKAKEGRIRGNLMGKRV 358

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVITPDP INID+LGVPWSIALNLTYPETVTPYN+ERLKELVEYGPHPPPGKTGA
Sbjct: 359  DFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNMERLKELVEYGPHPPPGKTGA 418

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KYIIR+DGQRLDLR+LKKSSD HLELGYKVERH+NDGDFVLFNRQPSLHKMSIMGHRI+I
Sbjct: 419  KYIIREDGQRLDLRFLKKSSDRHLELGYKVERHMNDGDFVLFNRQPSLHKMSIMGHRIRI 478

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV+G
Sbjct: 479  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVIG 538

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDTLLGCRK+TKRDTFIEKDVF NILMWWE+FDGK+P PTILKPRPLWTGKQ+F+LII
Sbjct: 539  IVQDTLLGCRKVTKRDTFIEKDVFYNILMWWEEFDGKIPIPTILKPRPLWTGKQIFSLII 598

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            PKQINL R A WH D + G L+ GDT VRIEKGE+++GTLCKKTLGT  GSLIHVIWEEV
Sbjct: 599  PKQINLMRQAFWHPDGEYGDLSPGDTQVRIEKGEVVAGTLCKKTLGTGQGSLIHVIWEEV 658

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GPDAARKFLGHTQWLVNYWLLQ  FSIGIGDTIADA TME IN+TI+KAK++VK+LIK+A
Sbjct: 659  GPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETITKAKHDVKDLIKKA 718

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
            QDK LE +PGRTM ESFEN+VN +LN ARD+AG+SAQKSL+ESNNLKAMVTAGSKG+FIN
Sbjct: 719  QDKQLEAQPGRTMKESFENRVNGILNKARDDAGASAQKSLAESNNLKAMVTAGSKGTFIN 778

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTACVGQQNVEGKRIP+GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA
Sbjct: 779  ISQMTACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 838

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKTSETGYIQRRLVKAMED+MVKYDGTVRNSLGDVIQFLYGEDGMDSVW
Sbjct: 839  MGGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 898

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            IESQ LDSLKMKK+EF++ +RFE+D ++W P+YM  E  +D+KTI+E+R+VFDAEV KLE
Sbjct: 899  IESQKLDSLKMKKAEFNRVYRFEIDRDDWAPDYMSAEAAEDIKTIQEIRNVFDAEVSKLE 958

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
            ADR Q+  EIA +G+S+WPLPVNLKRLIWNAQK FKVD R+ SDMHPME+VEAV+ LQER
Sbjct: 959  ADRRQMGLEIAPTGESNWPLPVNLKRLIWNAQKIFKVDLRKSSDMHPMEIVEAVENLQER 1018

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
            L+VVPG D +S+EAQ+NATLFF  LLRST ASKRVLK++RLTREAFEWVIGE+E+RFL S
Sbjct: 1019 LRVVPGNDQISMEAQRNATLFFGCLLRSTLASKRVLKDYRLTREAFEWVIGEVETRFLMS 1078

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
            LVAPGEMIGCVAAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRLREIINVAKKIKTPSL
Sbjct: 1079 LVAPGEMIGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1138

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +V+LKPGVN  KERAKNVQCALEYTTLRSVT+ATE+WYDP+PM T+IEED+EFVKSYYEM
Sbjct: 1139 TVYLKPGVNKEKERAKNVQCALEYTTLRSVTQATEIWYDPEPMSTLIEEDMEFVKSYYEM 1198

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PDED+APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLIL
Sbjct: 1199 PDEDVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLIL 1258

Query: 1246 RIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG-------------------- 1285
            RIRIMNDEAPKGE+ ++S EDDVFLKKIESNMLTEMALRG                    
Sbjct: 1259 RIRIMNDEAPKGEMTEQS-EDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFDEN 1317

Query: 1286 ---------------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
                           VN+LAVMCHEDVDA RTTSNHLIE+IEVLGIEAVR +LL ELR V
Sbjct: 1318 LAFVVEQEWVLDTEGVNMLAVMCHEDVDASRTTSNHLIEVIEVLGIEAVRNSLLKELRDV 1377

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            ISFDGSYVNYRHLAILCD MTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+
Sbjct: 1378 ISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVY 1437

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSP 1450
            AE+D+L+GVTENIMLGQLAPIGTGD  L+LN++ML++AIELQLPS+ E  ++GMTP+R+P
Sbjct: 1438 AEADHLKGVTENIMLGQLAPIGTGDFGLHLNEDMLQHAIELQLPSF-EATDYGMTPSRTP 1496

Query: 1451 VSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSP 1510
            + GTP++DGMMSP YL SP+LR SP++DAQFSPYVG M FSP+S      S   YSP SP
Sbjct: 1497 MIGTPHNDGMMSPSYLLSPSLRASPLSDAQFSPYVGNMPFSPSSPGYSPSSPG-YSPLSP 1555

Query: 1511 GYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA-------YSPTSPSYSP 1563
            GYSPTSPGYSPTSPGYSPTSPGYSPTSP YSP+SP YSPTSP        YSPTSPSY+P
Sbjct: 1556 GYSPTSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPTSPSYSPTSPSYAP 1615

Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
            TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP+Y+PTSPA
Sbjct: 1616 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYAPTSPA 1675

Query: 1624 YSPTSPSYSPTSP 1636
            YSPTSPSYSPTSP
Sbjct: 1676 YSPTSPSYSPTSP 1688



 Score =  104 bits (259), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 134/209 (64%), Positives = 147/209 (70%), Gaps = 46/209 (22%)

Query: 1510 PGYSPTSPGYSPT--------------SPGY--------SPTSPG-YSP----------- 1535
            P +  T  G +P+              SP Y        SP S   +SP           
Sbjct: 1481 PSFEATDYGMTPSRTPMIGTPHNDGMMSPSYLLSPSLRASPLSDAQFSPYVGNMPFSPSS 1540

Query: 1536 ------------TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1583
                         SP YSP+SPGYSPTSP YSPTSP YSPTSP YSPTSPSYSPTSP YS
Sbjct: 1541 PGYSPSSPGYSPLSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYS 1600

Query: 1584 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
            PTSPSYSPTSPSY+PTSPSYSPTSP+YSPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTSP
Sbjct: 1601 PTSPSYSPTSPSYAPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1660

Query: 1644 SYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
            +YSPTSPSY+PTSP+YSPTSP+YSPTSPG
Sbjct: 1661 AYSPTSPSYAPTSPAYSPTSPSYSPTSPG 1689



 Score =  104 bits (259), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 135/208 (64%), Positives = 145/208 (69%), Gaps = 46/208 (22%)

Query: 1517 PGYSPTSPGYSPT--------------SPGY--------SPTS-PTYSP----------- 1542
            P +  T  G +P+              SP Y        SP S   +SP           
Sbjct: 1481 PSFEATDYGMTPSRTPMIGTPHNDGMMSPSYLLSPSLRASPLSDAQFSPYVGNMPFSPSS 1540

Query: 1543 ------------SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1590
                         SPGYSPTSP YSPTSP YSPTSP YSPTSP YSPTSPSYSPTSP YS
Sbjct: 1541 PGYSPSSPGYSPLSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYS 1600

Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
            PTSPSYSPTSPSY+PTSP+YSPTSP+YSPTSP+YSPTSPSYSPTSPSYSPTSPSYSPTSP
Sbjct: 1601 PTSPSYSPTSPSYAPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1660

Query: 1651 SYSPTSPSYSPTSPAYSPTSPGYSPTSP 1678
            +YSPTSPSY+PTSPAYSPTSP YSPTSP
Sbjct: 1661 AYSPTSPSYAPTSPAYSPTSPSYSPTSP 1688



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 107/214 (50%), Gaps = 53/214 (24%)

Query: 1573 PSYSPT----SPSYSP----------TSPSY--------SPTSPS-YSP----------- 1598
            PS+  T    +PS +P           SPSY        SP S + +SP           
Sbjct: 1481 PSFEATDYGMTPSRTPMIGTPHNDGMMSPSYLLSPSLRASPLSDAQFSPYVGNMPFSPSS 1540

Query: 1599 ------------TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1646
                         SP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSPSYSPTSP YS
Sbjct: 1541 PGYSPSSPGYSPLSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYS 1600

Query: 1647 PTSPSYSPTSPSYS-PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSL 1705
            PTSPSYSPTSPSY+  +      +      +      +      +        +    S 
Sbjct: 1601 PTSPSYSPTSPSYAPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1660

Query: 1706 AYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
            AYSP+SP       Y+PTSP YSPTS SYSPTSP
Sbjct: 1661 AYSPTSP------SYAPTSPAYSPTSPSYSPTSP 1688


>gi|168053159|ref|XP_001779005.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669567|gb|EDQ56151.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1646

 Score = 2664 bits (6905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1273/1601 (79%), Positives = 1409/1601 (88%), Gaps = 82/1601 (5%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            MD RF +SPA++A+V+ VQFGI+SPDEIRQMSV  IE  ET +RGKPK GGLSDPRLGTI
Sbjct: 1    MDQRFAFSPADLARVKTVQFGIISPDEIRQMSVCLIESSETYDRGKPKMGGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DR  KCETC  +MAECPGHFGHLELAKPMFHIGF+KTVLSI+R VC NCS+ LADE+DH+
Sbjct: 61   DRHTKCETCAGSMAECPGHFGHLELAKPMFHIGFLKTVLSILRCVCHNCSRCLADEEDHR 120

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVP----GQDGEEPLKKNKGGCGAQQP 176
            FKQA K+RNPK+RLKK+LD CK+KTKC+ GDE+D      G++ E+  KK+ GGCGAQQP
Sbjct: 121  FKQARKVRNPKHRLKKVLDCCKSKTKCDAGDELDENDTRYGEETEK--KKSHGGCGAQQP 178

Query: 177  KLTIEGMKMIAEYKAQRKKNDDQEQ-LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            K TI+GMK++AE+KA RKK D+Q+Q +PEPVERKQ LTAE+VL +LKRISDEDC +LGLN
Sbjct: 179  KTTIDGMKLVAEFKASRKKGDEQDQHMPEPVERKQQLTAEKVLSILKRISDEDCAILGLN 238

Query: 236  PKYARPDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            PK+ARPDWMILQ LP          +     R  DDLTHQLAMIIRHN NL++QE+NGAP
Sbjct: 239  PKFARPDWMILQALPIPPPPVRPSVMMDSSARSEDDLTHQLAMIIRHNNNLKKQEQNGAP 298

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HII+EFAQLLQFHIATYFDN+LPGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRV
Sbjct: 299  THIINEFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICARLKAKEGRIRGNLMGKRV 358

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVITPDP INID+LGVPWSIALNLTYPETVTPYN+ERLKELVEYGPHPPPGKTGA
Sbjct: 359  DFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNMERLKELVEYGPHPPPGKTGA 418

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KYIIR+DGQRLDLR+LK+SSD HLELGYKVERH+NDGDFVLFNRQPSLHKMSIMGHRI+I
Sbjct: 419  KYIIREDGQRLDLRFLKRSSDRHLELGYKVERHMNDGDFVLFNRQPSLHKMSIMGHRIRI 478

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKC+VSPQSNRPV+G
Sbjct: 479  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCVVSPQSNRPVIG 538

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDTLLGCRK+TKRDTFIEKDVF NILMWWE+F GK+P PTILKPRPLWTGKQ+F LII
Sbjct: 539  IVQDTLLGCRKVTKRDTFIEKDVFYNILMWWEEFAGKIPIPTILKPRPLWTGKQIFTLII 598

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            PKQINL R A WH D++ G L+ GDT VRIEKGE+++GTLCKKTLGT  GSLIHVIWEEV
Sbjct: 599  PKQINLMRQAFWHPDSEVGDLSPGDTQVRIEKGEVVAGTLCKKTLGTGQGSLIHVIWEEV 658

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GPDAARKFLGHTQWLVNYWLLQ  FSIGIGDTIADA TME IN+TIS AKN+VK+LIK A
Sbjct: 659  GPDAARKFLGHTQWLVNYWLLQQGFSIGIGDTIADAATMEKINETISIAKNDVKDLIKMA 718

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
            QDK LE +PGRTM ESFEN+VN VLN ARDEAG+SAQ+SLSESNNLKAMVTAGSKG+FIN
Sbjct: 719  QDKQLEAQPGRTMKESFENRVNGVLNKARDEAGASAQRSLSESNNLKAMVTAGSKGTFIN 778

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTACVGQQNVEGKRIP+GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA
Sbjct: 779  ISQMTACVGQQNVEGKRIPYGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 838

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKTSETGYIQRRLVKAMED+MVKYDGTVRNSLGDVIQFLYGEDGMDSVW
Sbjct: 839  MGGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 898

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            IESQ LDSLKMKK+EF++ ++FE+D ++W+P+Y+               +VFDAEV KLE
Sbjct: 899  IESQKLDSLKMKKAEFNRVYKFEIDRDDWSPDYI---------------NVFDAEVSKLE 943

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
            ADR Q+  EIA +G+++WPLPVNLKRLIWNAQK FKVD R+PSDMHPME+VEAVDKLQER
Sbjct: 944  ADRRQMGLEIAPTGEANWPLPVNLKRLIWNAQKIFKVDFRKPSDMHPMEIVEAVDKLQER 1003

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
            L+VVPG+D +S+EAQ+NATLFF  LLRST ASKRVLK++RLTREAF+WVIGEIE+RFL S
Sbjct: 1004 LRVVPGDDQISMEAQRNATLFFGCLLRSTLASKRVLKDYRLTREAFDWVIGEIETRFLMS 1063

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
            LVAPGEMIGCVAAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRLREIINVAKK KTPSL
Sbjct: 1064 LVAPGEMIGCVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLREIINVAKKTKTPSL 1123

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +VFLKPG+N  KE+AKNVQCALEYTTLRSVT+ATE+WYDP+PM T+IEEDVEFV+SYYEM
Sbjct: 1124 TVFLKPGINKEKEKAKNVQCALEYTTLRSVTQATEIWYDPEPMSTLIEEDVEFVRSYYEM 1183

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PDED+APEKISPWLLRIELNREMMVDKKLSMA +AEKIN EFDDDLTCIFNDDNA+KLIL
Sbjct: 1184 PDEDVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLIL 1243

Query: 1246 RIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG-------------------- 1285
            RIRIMNDEAPKGE  ++S EDDVFLKKIESNMLTEMALRG                    
Sbjct: 1244 RIRIMNDEAPKGEATEQS-EDDVFLKKIESNMLTEMALRGIPDIRKVFIKEDKKNRFDEN 1302

Query: 1286 ---------------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
                           VN+LAVMCHEDVDA RT SNHLIE+IEVLGIEAVR ALL ELR V
Sbjct: 1303 VAFEPEKEWILDTEGVNMLAVMCHEDVDASRTLSNHLIEVIEVLGIEAVRNALLKELRDV 1362

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            ISFDGSYVNYRHLAILCD MTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+
Sbjct: 1363 ISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVY 1422

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSP 1450
            AE+D+L+GVTENIMLGQLAPIGTGD  L+LN+ ML++AIELQLPS+ EG ++GMTP+RSP
Sbjct: 1423 AEADHLKGVTENIMLGQLAPIGTGDFGLHLNENMLQHAIELQLPSF-EGTDYGMTPSRSP 1481

Query: 1451 VSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF-------------SPTSSPG 1497
            + GTP+++GMMSP YL SP+LR SP+++AQFSPYVG M F                 SPG
Sbjct: 1482 MIGTPHNEGMMSPSYLLSPSLRASPLSEAQFSPYVGSMPFSPSSPGYSPSSPGYSPLSPG 1541

Query: 1498 YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSP 1538
            YSP+SPGYSP+SPGYSPTSPGYSPTSP YSPTSPGYSPTSP
Sbjct: 1542 YSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPTSP 1582



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/117 (54%), Positives = 77/117 (65%), Gaps = 4/117 (3%)

Query: 1538 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPS--YSPTS 1593
            P++  +  G +P+      T  +    SPSY  SP+  +   +   +SP   S  +SP+S
Sbjct: 1466 PSFEGTDYGMTPSRSPMIGTPHNEGMMSPSYLLSPSLRASPLSEAQFSPYVGSMPFSPSS 1525

Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
            P YSP+SP YSP SP YSPTSP YSPTSP YSPTSP YSPTSPSYSPTSP YSPTSP
Sbjct: 1526 PGYSPSSPGYSPLSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPTSP 1582



 Score = 82.4 bits (202), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 70/122 (57%), Positives = 82/122 (67%), Gaps = 7/122 (5%)

Query: 1524 PGYSPTSPGYSPT-SPTY-SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1581
            P +  T  G +P+ SP   +P + G    SP+Y   SPS   +  S +  SP Y  + P 
Sbjct: 1466 PSFEGTDYGMTPSRSPMIGTPHNEGM--MSPSYL-LSPSLRASPLSEAQFSP-YVGSMP- 1520

Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
            +SP+SP YSP+SP YSP SP YSPTSP YSPTSP YSPTSP YSPTSPSYSPTSP YSPT
Sbjct: 1521 FSPSSPGYSPSSPGYSPLSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPT 1580

Query: 1642 SP 1643
            SP
Sbjct: 1581 SP 1582



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 59/117 (50%), Gaps = 32/117 (27%)

Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY--------SPTSPS-YSPTSPS------- 1651
            P++  T    +P+      T  +    SPSY        SP S + +SP   S       
Sbjct: 1466 PSFEGTDYGMTPSRSPMIGTPHNEGMMSPSYLLSPSLRASPLSEAQFSPYVGSMPFSPSS 1525

Query: 1652 ----------------YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
                            YSPTSP YSPTSP YSPTSPGYSPTSPSYSPTSP YSPTSP
Sbjct: 1526 PGYSPSSPGYSPLSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPTSP 1582



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 57/117 (48%), Gaps = 39/117 (33%)

Query: 1510 PGYSPTSPGYSPT--------------SPGY--SPTSPGYSPTSPTYSP----------- 1542
            P +  T  G +P+              SP Y  SP+      +   +SP           
Sbjct: 1466 PSFEGTDYGMTPSRSPMIGTPHNEGMMSPSYLLSPSLRASPLSEAQFSPYVGSMPFSPSS 1525

Query: 1543 ------------SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1587
                         SPGYSPTSP YSPTSP YSPTSP YSPTSPSYSPTSP YSPTSP
Sbjct: 1526 PGYSPSSPGYSPLSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPTSP 1582



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 59/118 (50%), Gaps = 46/118 (38%)

Query: 1601 PSYSPT----SPAYSP----------TSPAY--------SPTSPA-YSPTSPS------- 1630
            PS+  T    +P+ SP           SP+Y        SP S A +SP   S       
Sbjct: 1466 PSFEGTDYGMTPSRSPMIGTPHNEGMMSPSYLLSPSLRASPLSEAQFSPYVGSMPFSPSS 1525

Query: 1631 ----------------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
                            YSPTSP YSPTSP YSPTSP YSPTSPSYSPTSP YSPTSPG
Sbjct: 1526 PGYSPSSPGYSPLSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPTSPG 1583



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 59/117 (50%), Gaps = 46/117 (39%)

Query: 1587 PSYSPT----SPSYSP----------TSPSY--------SPTSPA-YSP----------- 1612
            PS+  T    +PS SP           SPSY        SP S A +SP           
Sbjct: 1466 PSFEGTDYGMTPSRSPMIGTPHNEGMMSPSYLLSPSLRASPLSEAQFSPYVGSMPFSPSS 1525

Query: 1613 ------------TSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
                         SP YSPTSP YSPTSP YSPTSP YSPTSPSYSPTSP YSPTSP
Sbjct: 1526 PGYSPSSPGYSPLSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPTSP 1582



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 59/118 (50%), Gaps = 46/118 (38%)

Query: 1594 PSYSPT----SPSYSP----------TSPAY--------SPTSPA-YSP----------- 1619
            PS+  T    +PS SP           SP+Y        SP S A +SP           
Sbjct: 1466 PSFEGTDYGMTPSRSPMIGTPHNEGMMSPSYLLSPSLRASPLSEAQFSPYVGSMPFSPSS 1525

Query: 1620 ------------TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1665
                         SP YSPTSP YSPTSP YSPTSP YSPTSPSYSPTSP YSPTSP 
Sbjct: 1526 PGYSPSSPGYSPLSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPTSPG 1583



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/117 (43%), Positives = 56/117 (47%), Gaps = 39/117 (33%)

Query: 1517 PGYSPTSPGYSPT--------------SPGY--SPTSPTYSPSSPGYSP----------- 1549
            P +  T  G +P+              SP Y  SP+      S   +SP           
Sbjct: 1466 PSFEGTDYGMTPSRSPMIGTPHNEGMMSPSYLLSPSLRASPLSEAQFSPYVGSMPFSPSS 1525

Query: 1550 ------------TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
                         SP YSPTSP YSPTSP YSPTSP YSPTSPSYSPTSP YSPTSP
Sbjct: 1526 PGYSPSSPGYSPLSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPTSP 1582



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 47/125 (37%), Positives = 62/125 (49%), Gaps = 21/125 (16%)

Query: 1657 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTY--SPTSPSYNPQSAKYSPSLAYSP----- 1709
            PS+  T    +P+      T  +    SP+Y  SP+  +     A++SP +   P     
Sbjct: 1466 PSFEGTDYGMTPSRSPMIGTPHNEGMMSPSYLLSPSLRASPLSEAQFSPYVGSMPFSPSS 1525

Query: 1710 ------SSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDY 1763
                  S      +  YSPTSP YSPTS  YSPTSP YSP+SP+YSP+S        P Y
Sbjct: 1526 PGYSPSSPGYSPLSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTS--------PGY 1577

Query: 1764 SPSSP 1768
            SP+SP
Sbjct: 1578 SPTSP 1582


>gi|302813666|ref|XP_002988518.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
 gi|300143625|gb|EFJ10314.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
          Length = 1797

 Score = 2661 bits (6897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1291/1610 (80%), Positives = 1415/1610 (87%), Gaps = 68/1610 (4%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            MD RFPYSPAE+A+V+ VQFG++SPDEIRQMSV +IE  ET +RGKPK GGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAELARVKRVQFGLMSPDEIRQMSVCKIESSETYDRGKPKSGGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DR+ KCETC  +MAECPGHFGHLELAKPMFHIGF+KTVL+++R VC+NCS ILA E   +
Sbjct: 61   DRQTKCETCGGSMAECPGHFGHLELAKPMFHIGFLKTVLALLRCVCYNCSHILALEVCRE 120

Query: 121  ----------FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPG-QDGEEPLKKNKG 169
                      FK A K +NPK RLKK+L+ CKNK KCEG +  D+ G QD +E  +K  G
Sbjct: 121  TLLLCFIFGLFKLAKKAKNPKQRLKKVLECCKNKQKCEGNNN-DMDGEQDDQEGEQKGHG 179

Query: 170  GCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ-LPEPVERKQTLTAERVLGVLKRISDED 228
            GCGAQQPK+TI+GMK+IAE+K  +KK DDQ+Q LPEPVERKQ LTAERVLG+LKRISDE+
Sbjct: 180  GCGAQQPKITIDGMKIIAEFKVPKKKGDDQDQYLPEPVERKQQLTAERVLGILKRISDEE 239

Query: 229  CQLLGLNPKYARPDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRR 278
            C++LGL+P++ARPDWMILQVLP          +     R  DDLTHQLAMIIRHN NL+R
Sbjct: 240  CRILGLDPQFARPDWMILQVLPIPPPPVRPSVMMDSSARSEDDLTHQLAMIIRHNNNLKR 299

Query: 279  QERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRG 338
            QE+NGAP HII+EF QLLQFHIATYFDN+LPGQPRATQRSGRPIKSIC RLKAKEGRIRG
Sbjct: 300  QEQNGAPTHIINEFTQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICQRLKAKEGRIRG 359

Query: 339  NLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHP 398
            NLMGKRVDFSARTVITPDP INID+LGVPWSIALNLTYPETVTPYN+ERLKELVEYGPHP
Sbjct: 360  NLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKELVEYGPHP 419

Query: 399  PPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSI 458
            PPGKTGAKYIIR+DGQRLDLRYLKKSSD HLELGYKVERHL DGDFVLFNRQPSLHKMSI
Sbjct: 420  PPGKTGAKYIIREDGQRLDLRYLKKSSDRHLELGYKVERHLCDGDFVLFNRQPSLHKMSI 479

Query: 459  MGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 518
            MGHRI+IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV ELM+VPKCIVSPQ
Sbjct: 480  MGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVSELMIVPKCIVSPQ 539

Query: 519  SNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGK 578
            SNRPV+GIVQDTLLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVP P I+KPRP+WTGK
Sbjct: 540  SNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPTPAIVKPRPIWTGK 599

Query: 579  QVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLI 638
            Q+F+LIIPKQIN+ RTAAWH D++ G  + GDT+VRIEKGELL+GTLCKKTLGTS+GSLI
Sbjct: 600  QIFSLIIPKQINMVRTAAWHNDSETGDNSPGDTMVRIEKGELLTGTLCKKTLGTSSGSLI 659

Query: 639  HVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNV 698
            HVIWEEVGPDAARKFLGHTQWLVNYWLLQ+ FSIGIGDTIAD+ TME INDTI KAKN V
Sbjct: 660  HVIWEEVGPDAARKFLGHTQWLVNYWLLQHGFSIGIGDTIADSATMEKINDTIFKAKNEV 719

Query: 699  KNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAG 758
            K+LIK AQ+K LE +PGRTMMESFEN+VNQVLN ARDEAGSSAQKSLSESNN+KAMVTAG
Sbjct: 720  KDLIKIAQEKQLESQPGRTMMESFENRVNQVLNRARDEAGSSAQKSLSESNNVKAMVTAG 779

Query: 759  SKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTP 818
            SKGSFINISQM ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTP
Sbjct: 780  SKGSFINISQMIACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTP 839

Query: 819  QEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGE 878
            QEF+FHAMGGREGLIDTAVKTSETGYIQRRLVKAMED+MVKYDGTVRNSLGDVIQFLYGE
Sbjct: 840  QEFYFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGE 899

Query: 879  DGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFD 938
            DGMD+VWIESQ LDS+KMKK  FD  ++FE+D ENWNP+YM  +  +D+KTI+E+R+VFD
Sbjct: 900  DGMDAVWIESQHLDSIKMKKKNFDMTYKFEVDNENWNPDYMASDCAEDIKTIQEIRNVFD 959

Query: 939  AEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
            AEVQKLEADR QL  EIATSG+  WPLPVNLKRLIWNAQK FK++ ++PSDMHPME+VEA
Sbjct: 960  AEVQKLEADRKQLGLEIATSGEPHWPLPVNLKRLIWNAQKIFKIEMKKPSDMHPMEIVEA 1019

Query: 999  VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            VDKLQE+L VVPG+DP+S+EAQKNATLFFN LLRSTFASKRVLKE+RLT+EAFEWVIGEI
Sbjct: 1020 VDKLQEKLLVVPGDDPISIEAQKNATLFFNCLLRSTFASKRVLKEYRLTKEAFEWVIGEI 1079

Query: 1059 ESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK 1118
            E+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK
Sbjct: 1080 ETRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK 1139

Query: 1119 KIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEF 1178
            KIKTPSL V LKP V+  KERAKNVQCALEYTTLRSVT+ATE+WYDPDPM TIIEEDVEF
Sbjct: 1140 KIKTPSLYVHLKPEVSKEKERAKNVQCALEYTTLRSVTQATEIWYDPDPMSTIIEEDVEF 1199

Query: 1179 VKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDD 1238
            VKSYYEMPDED+ P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EF DDLTCIFNDD
Sbjct: 1200 VKSYYEMPDEDVTPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFVDDLTCIFNDD 1259

Query: 1239 NADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------- 1284
            NA+KLILR+RIMND+  KG   D+S +DDVFLKKIESNMLTEMALR              
Sbjct: 1260 NAEKLILRVRIMNDDVSKGGEVDQS-DDDVFLKKIESNMLTEMALRGIPDIHKVFIREHK 1318

Query: 1285 ---------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
                                 GVN+LAVMC+EDVDA RT SNHLIE+IEVLGIEAVR+AL
Sbjct: 1319 RQRFDEHEGFKTETEWMLDTEGVNMLAVMCNEDVDATRTVSNHLIEVIEVLGIEAVRQAL 1378

Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
            L ELR VISFDGSYVNYRHLAILCD MTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI
Sbjct: 1379 LKELREVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1438

Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFG 1443
            LLDAAVFAE+D+LRGVTENIMLGQLAPIGTGD  L LND+ML++AIELQLPSYME  +FG
Sbjct: 1439 LLDAAVFAEADHLRGVTENIMLGQLAPIGTGDFGLLLNDKMLEHAIELQLPSYMETADFG 1498

Query: 1444 MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSP 1503
            +      V+GTP+H+GMMSP YL SPNLR SP+TDAQFSPYVGG+ FSP +   YSP SP
Sbjct: 1499 L----GGVTGTPHHEGMMSPSYLLSPNLRASPITDAQFSPYVGGITFSPGA---YSPLSP 1551

Query: 1504 GYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1553
             YSP+  GYSP SP YSP+SP YSP+SP YSP SP YSPSSPGYSP SPA
Sbjct: 1552 AYSPA--GYSPASPNYSPSSPTYSPSSPAYSPASPAYSPSSPGYSPASPA 1599



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 60/89 (67%), Gaps = 4/89 (4%)

Query: 1586 SPSY--SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
            SPSY  SP   +   T   +SP     + +  AYSP SPAYSP    YSP SP+YSP+SP
Sbjct: 1513 SPSYLLSPNLRASPITDAQFSPYVGGITFSPGAYSPLSPAYSPAG--YSPASPNYSPSSP 1570

Query: 1644 SYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
            +YSP+SP+YSP SP+YSP+SP YSP SP 
Sbjct: 1571 TYSPSSPAYSPASPAYSPSSPGYSPASPA 1599



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 59/93 (63%), Gaps = 8/93 (8%)

Query: 1544 SPGY--SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1601
            SP Y  SP   A   T   +SP     + +  +YSP SP+YSP    YSP SP+YSP+SP
Sbjct: 1513 SPSYLLSPNLRASPITDAQFSPYVGGITFSPGAYSPLSPAYSPAG--YSPASPNYSPSSP 1570

Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT 1634
            +YSP+SPAYSP SPAYSP+SP YSP     SP 
Sbjct: 1571 TYSPSSPAYSPASPAYSPSSPGYSP----ASPA 1599



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/94 (53%), Positives = 60/94 (63%), Gaps = 10/94 (10%)

Query: 1628 SPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
            SPSY  SP   +   T   +SP     + +  +YSP SPAYSP   GYSP SP+YSP+SP
Sbjct: 1513 SPSYLLSPNLRASPITDAQFSPYVGGITFSPGAYSPLSPAYSPA--GYSPASPNYSPSSP 1570

Query: 1686 TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
            TYSP+SP+Y+P S       AYSPSSP  SPASP
Sbjct: 1571 TYSPSSPAYSPASP------AYSPSSPGYSPASP 1598


>gi|302794771|ref|XP_002979149.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
 gi|300152917|gb|EFJ19557.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
          Length = 1764

 Score = 2635 bits (6829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1264/1583 (79%), Positives = 1385/1583 (87%), Gaps = 82/1583 (5%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            MD RFPYSPAE+A+V+ VQFG++SPDEIRQMSV +IE  ET +RGKPK GGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAELARVKRVQFGLMSPDEIRQMSVCKIESSETYDRGKPKSGGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE---- 116
            DR+ KCETC  +MAECPGHFGHLELAKPMFHIGF+KTVL+++R VC+NCS ILA E    
Sbjct: 61   DRQTKCETCGGSMAECPGHFGHLELAKPMFHIGFLKTVLALLRCVCYNCSHILALEVCRE 120

Query: 117  --------------DDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPG-QDGE 161
                          +DHKFK A K +NPK RLKK+L+ CKNK KCEG +  D+ G QD +
Sbjct: 121  TLLLCFIFGLVCWQNDHKFKLAKKAKNPKQRLKKVLECCKNKQKCEGNNN-DMDGEQDDQ 179

Query: 162  EPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ-LPEPVERKQTLTAERVLGV 220
            E  +K  GGCGAQQPK+TI+GMK+IAE+K  +KK DDQ+Q LPEPVERKQ LTAERVLG+
Sbjct: 180  EGEQKGHGGCGAQQPKITIDGMKIIAEFKVPKKKGDDQDQYLPEPVERKQQLTAERVLGI 239

Query: 221  LKRISDEDCQLLGLNPKYARPDWMILQVLP----------IPPPPVRPSDDLTHQLAMII 270
            LKRISDE+C++LGL+P++ARPDWMILQVLP          +     R  DDLTHQLAMII
Sbjct: 240  LKRISDEECRILGLDPQFARPDWMILQVLPIPPPPVRPSVMMDSSARSEDDLTHQLAMII 299

Query: 271  RHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLK 330
            RHN NL+RQE+NGAP HII+EF QLLQFHIATYFDN+LPGQPRATQRSGRPIKSIC RLK
Sbjct: 300  RHNNNLKRQEQNGAPTHIINEFTQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICQRLK 359

Query: 331  AKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKE 390
            AKEGRIRGNLMGKRVDFSARTVITPDP INID+LGVPWSIALNLTYPETVTPYN+ERLKE
Sbjct: 360  AKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPETVTPYNLERLKE 419

Query: 391  LVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQ 450
            LVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSD HLELGYKVERHL DGDFVLFNRQ
Sbjct: 420  LVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDRHLELGYKVERHLCDGDFVLFNRQ 479

Query: 451  PSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 510
            PSLHKMSIMGHRI+IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV ELM+V
Sbjct: 480  PSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVSELMIV 539

Query: 511  PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILK 570
            PKCIVSPQSNRPV+GIVQDTLLGCRK+TKRDTFIEKDVFMNILMWWEDFDGKVP P I+K
Sbjct: 540  PKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDVFMNILMWWEDFDGKVPTPAIVK 599

Query: 571  PRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTL 630
            PRP+WTGKQ+F+LIIPKQIN+ RTAAWH D++ G  + GDT+VRIEKGELL+GTLCKKTL
Sbjct: 600  PRPIWTGKQIFSLIIPKQINMVRTAAWHNDSETGDNSPGDTMVRIEKGELLTGTLCKKTL 659

Query: 631  GTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDT 690
            GTS+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ+ FSIGIGDTIAD+ TME IN+T
Sbjct: 660  GTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQHGFSIGIGDTIADSATMEKINET 719

Query: 691  ISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNN 750
            I KAKN VK+LIK AQ+K LE +PGRTMMESFEN+VNQVLN ARDEAGSSAQKSLSESNN
Sbjct: 720  IFKAKNEVKDLIKMAQEKQLESQPGRTMMESFENRVNQVLNRARDEAGSSAQKSLSESNN 779

Query: 751  LKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVEN 810
            +KAMVTAGSKGSFINISQM ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVEN
Sbjct: 780  VKAMVTAGSKGSFINISQMIACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVEN 839

Query: 811  SYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD 870
            SYLRGLTPQEF+FHAMGGREGLIDTAVKTSETGYIQRRLVKAMED+MVKYDGTVRNSLGD
Sbjct: 840  SYLRGLTPQEFYFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVMVKYDGTVRNSLGD 899

Query: 871  VIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTI 930
            VIQFLYGEDGMD+VWIESQ LDS+KMKK +FD  ++FE+D ENWNP+YM  +  +D+KTI
Sbjct: 900  VIQFLYGEDGMDAVWIESQRLDSIKMKKKDFDMTYKFEVDNENWNPDYMASDCAEDIKTI 959

Query: 931  KELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDM 990
            +E+R+VFDAEVQKLEADR QL  EIATSGD  WPLPVNLKRLIWNAQK FK++ ++PSDM
Sbjct: 960  QEIRNVFDAEVQKLEADRKQLGLEIATSGDPQWPLPVNLKRLIWNAQKIFKIEMKKPSDM 1019

Query: 991  HPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREA 1050
            HPME+VEAVDKLQE+L VVPG+DP+S+EAQKNATLFFN LLRSTFASKRVLKE+RLT+EA
Sbjct: 1020 HPMEIVEAVDKLQEKLLVVPGDDPISIEAQKNATLFFNCLLRSTFASKRVLKEYRLTKEA 1079

Query: 1051 FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL 1110
            FEWVIGEIE+RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL
Sbjct: 1080 FEWVIGEIETRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL 1139

Query: 1111 REIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGT 1170
            REIINVAKKIKTPSL V LKP V+  KERAKNVQCALEYTTLRSVT+ATE+WYDPDPM T
Sbjct: 1140 REIINVAKKIKTPSLYVHLKPEVSKEKERAKNVQCALEYTTLRSVTQATEIWYDPDPMST 1199

Query: 1171 IIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDD 1230
            IIEEDVEFVKSYYEMPDED+ P+KISPWLLRIELNREMMVDKKLSMA +AEKIN EF DD
Sbjct: 1200 IIEEDVEFVKSYYEMPDEDVTPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFVDD 1259

Query: 1231 LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------ 1284
            LTCIFNDDNA+KLILR+RIMND+  KG   D+S +DDVFLKKIESNMLTEMALR      
Sbjct: 1260 LTCIFNDDNAEKLILRVRIMNDDVSKGGEVDQS-DDDVFLKKIESNMLTEMALRGIPDIH 1318

Query: 1285 -----------------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLG 1315
                                         GVN+LAVMC+EDVDA RT SNHLIE+IEVLG
Sbjct: 1319 KVFIREHKRQRFDEHEGFKAETEWMLDTEGVNMLAVMCNEDVDATRTVSNHLIEVIEVLG 1378

Query: 1316 IEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRC 1375
            IEAVR+ALL ELR VISFDGSYVNYRHLAILCD MTYRGHLMAITRHGINRNDTGPMMRC
Sbjct: 1379 IEAVRQALLKELREVISFDGSYVNYRHLAILCDVMTYRGHLMAITRHGINRNDTGPMMRC 1438

Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS 1435
            SFEETVDILLDAAVFAE+D+LRGVTENIMLGQLAPIGTGD  L LND+ML++AIELQLPS
Sbjct: 1439 SFEETVDILLDAAVFAEADHLRGVTENIMLGQLAPIGTGDFGLLLNDKMLEHAIELQLPS 1498

Query: 1436 YMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSS 1495
            YME  +FG+      V+GTP+H+GMMSP YL SPNLR SP+TDAQFSPYV          
Sbjct: 1499 YMETADFGL----GGVTGTPHHEGMMSPSYLLSPNLRASPITDAQFSPYV---------- 1544

Query: 1496 PGYSPSSPGYSPSSPGYSPTSPG 1518
              YSP+SP YSPSSPGYSP SP 
Sbjct: 1545 -AYSPASPAYSPSSPGYSPASPA 1566



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 3/47 (6%)

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPAYSPTSPAYSPTSPA 1623
            SPSY   SP+   +  + +  SP  +YSP SPAYSP+SP YSP SPA
Sbjct: 1521 SPSYLL-SPNLRASPITDAQFSPYVAYSPASPAYSPSSPGYSPASPA 1566



 Score = 42.4 bits (98), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 3/47 (6%)

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSP--AYSPTSPAYSPTSPAYSPTSPS 1630
            SPSY   SP+   +  + +  SP  AYSP SPAYSP+SP YSP SP+
Sbjct: 1521 SPSYLL-SPNLRASPITDAQFSPYVAYSPASPAYSPSSPGYSPASPA 1566



 Score = 41.2 bits (95), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 3/47 (6%)

Query: 1565 SPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPA 1609
            SPSY   SP+   +  + +  SP  +YSP SP+YSP+SP YSP SPA
Sbjct: 1521 SPSYLL-SPNLRASPITDAQFSPYVAYSPASPAYSPSSPGYSPASPA 1566


>gi|218200495|gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indica Group]
          Length = 1449

 Score = 2617 bits (6782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1245/1434 (86%), Positives = 1317/1434 (91%), Gaps = 47/1434 (3%)

Query: 31   MSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMF 90
            MSVVQIEH ET ERGKPKPGGLSDPRLGTID+K+KCETC A MAECPGHFGHLELAKPMF
Sbjct: 1    MSVVQIEHAETMERGKPKPGGLSDPRLGTIDQKIKCETCMAGMAECPGHFGHLELAKPMF 60

Query: 91   HIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGG 150
            HIGF+KTVLSIMR VCFNCSKILADEDD KFKQALKIRNPKNRLK+I DACK+K  C GG
Sbjct: 61   HIGFIKTVLSIMRCVCFNCSKILADEDDTKFKQALKIRNPKNRLKRIYDACKSKKVCAGG 120

Query: 151  DEIDV-PGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERK 209
            D++DV   QD +EP+KK +GGCGAQQP +T++GMKM+AE+KA +KKNDDQEQLPEPVERK
Sbjct: 121  DDLDVQEQQDTDEPVKK-RGGCGAQQPNITVDGMKMVAEFKAPKKKNDDQEQLPEPVERK 179

Query: 210  QTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP----------IPPPPVRPS 259
            Q L+AERVL VLKRISDEDC LLGLNPK+ARPDWMILQVLP          +     R  
Sbjct: 180  QILSAERVLNVLKRISDEDCLLLGLNPKFARPDWMILQVLPIPPPPVRPSVMMDTSSRSE 239

Query: 260  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
            DDLTHQLAMIIRHNENLRRQERNGAPAHII+EFAQLLQFHIATYFDNELPGQPRATQRSG
Sbjct: 240  DDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNELPGQPRATQRSG 299

Query: 320  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
            RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INID+LGVPWSIALNLTYPET
Sbjct: 300  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIALNLTYPET 359

Query: 380  VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHL 439
            VTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLELGYKVERHL
Sbjct: 360  VTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLELGYKVERHL 419

Query: 440  NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 499
            NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE
Sbjct: 420  NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 479

Query: 500  TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 559
            TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT IEKDVFMNILMWWEDF
Sbjct: 480  TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMNILMWWEDF 539

Query: 560  DGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGE 619
            DGKVP P ILKPRP+WTGKQVFNLIIPK INL R +AWH++ + G +T GDT+VRIEKGE
Sbjct: 540  DGKVPAPAILKPRPIWTGKQVFNLIIPKPINLIRFSAWHSEAETGFITPGDTMVRIEKGE 599

Query: 620  LLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 679
            LLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIA
Sbjct: 600  LLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIA 659

Query: 680  DAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGS 739
            DA TM  IN+TISKAK++VK LIKQA DK LE EPGRTMMESFEN+VNQVLN ARD+AGS
Sbjct: 660  DAATMVKINETISKAKDDVKELIKQAHDKQLEAEPGRTMMESFENRVNQVLNKARDDAGS 719

Query: 740  SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDD 799
            SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+DRTLPHFTKDD
Sbjct: 720  SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDD 779

Query: 800  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
            YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK
Sbjct: 780  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 839

Query: 860  YDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYM 919
            YDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK EFD  FR+E+D+ENW PNYM
Sbjct: 840  YDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRYELDDENWRPNYM 899

Query: 920  LQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKT 979
            L E++DDLKTI+E R+VF+AEVQKLEADR+QL +EIAT+GD++WP+PVNLKRLIWNAQKT
Sbjct: 900  LPEHVDDLKTIREFRNVFEAEVQKLEADRFQLGSEIATTGDNTWPMPVNLKRLIWNAQKT 959

Query: 980  FKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKR 1039
            FK+D RRPSDMHPME+VEA+DKLQERLKVVPG+D +S+EAQKNATLFFNILLRSTFASKR
Sbjct: 960  FKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKR 1019

Query: 1040 VLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1099
            VLKE+RLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS
Sbjct: 1020 VLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1079

Query: 1100 AKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEAT 1159
            AKNVTLGVPRLREIINVAKKIKTPSLSV+LKP VN  KE AKNVQCALEYTTLRSVT AT
Sbjct: 1080 AKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCALEYTTLRSVTHAT 1139

Query: 1160 EVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAV 1219
            E+WYDPDP+GTIIEEDVEFV+SYYEMPDEDI P+KISPWLLRIELNREMMVDKKLSMA +
Sbjct: 1140 EIWYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNREMMVDKKLSMADI 1199

Query: 1220 AEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLT 1279
            AEKIN EFDDDL+CIFNDDNADKLILR+RI NDEAPKGE+ DESAEDDVFLKKIESNMLT
Sbjct: 1200 AEKINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDDVFLKKIESNMLT 1259

Query: 1280 EMALR-----------------------------------GVNLLAVMCHEDVDARRTTS 1304
            EMALR                                   GVNLLAVMCHEDVDA RTTS
Sbjct: 1260 EMALRGIPDINKVFIKYGKVNKFEDNVGFKADNEWMLVTEGVNLLAVMCHEDVDATRTTS 1319

Query: 1305 NHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGI 1364
            NHLIE+IEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGI
Sbjct: 1320 NHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGI 1379

Query: 1365 NRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSL 1418
            NRNDTGP+MRCSFEETVDILLDAAV+AESDYLRGV+ENIMLGQLAPIGTG   L
Sbjct: 1380 NRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVSENIMLGQLAPIGTGGFDL 1433


>gi|255079898|ref|XP_002503529.1| predicted protein [Micromonas sp. RCC299]
 gi|226518796|gb|ACO64787.1| predicted protein [Micromonas sp. RCC299]
          Length = 1720

 Score = 2261 bits (5860), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1111/1744 (63%), Positives = 1337/1744 (76%), Gaps = 91/1744 (5%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRK 63
            RFP+S AE+ +V+ VQFG+LSPDEIR+MSV +IE  ET E+G+PK GGLSDPR+GT+DR 
Sbjct: 6    RFPHSTAELRRVKAVQFGVLSPDEIRKMSVCEIETAETYEKGRPKRGGLSDPRMGTMDRA 65

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE-DDHKFK 122
            M CET   N  + PG+FGHLELAKP+FH GF+K V+S++R V F+ SK++ D+ +D KF 
Sbjct: 66   MACETDGMNSTDTPGYFGHLELAKPVFHYGFIKNVVSVLRCVGFSSSKLMIDKNEDPKFA 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEG 182
            Q ++I+N K RL+K  DACK KT C                        G  QP+  +EG
Sbjct: 126  QIMRIKNNKQRLRKFTDACKTKTICPA---------------------TGTPQPQYRLEG 164

Query: 183  MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
            MK+ AE+K    K ++ + LP+  ERKQ +T ER L +LK ISDEDC++LG +P++A P 
Sbjct: 165  MKITAEFK----KLEEDDYLPDGGERKQVITPERALNILKNISDEDCRILGFDPEHAHPS 220

Query: 243  WMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
            W +LQ LP+PP PVRPS          DDLT +L  I+R N+NL+RQE+NGAP H++ EF
Sbjct: 221  WFVLQALPVPPHPVRPSVAFDSSTRSEDDLTVKLMEIVRTNKNLQRQEQNGAPQHVVQEF 280

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
             +LLQ+HI T+ DN + GQPRA  RSGRPIKSI  RLK K GRIRGNLMGKRVDFSARTV
Sbjct: 281  TELLQYHIMTFMDNTVAGQPRALTRSGRPIKSISERLKGKAGRIRGNLMGKRVDFSARTV 340

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
            ITPDP + +D+LGVPWSIALN+TYPETVTPYNIERL++LVE GPHPPPG+TGAKYIIR+D
Sbjct: 341  ITPDPNLMLDELGVPWSIALNMTYPETVTPYNIERLRKLVENGPHPPPGETGAKYIIRED 400

Query: 413  GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
            GQRLDLR++K+ SD  LE GYKVERH+ +GD VLFNRQPSLHKMSIMGHR++IMPYSTFR
Sbjct: 401  GQRLDLRFMKRESDKRLEYGYKVERHMINGDCVLFNRQPSLHKMSIMGHRVRIMPYSTFR 460

Query: 473  LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
            +N+SVT PYNADFDGDEMNMH+PQS ETRAEV ELMMVPK IVSPQ+N+PVM IVQDTLL
Sbjct: 461  MNISVTPPYNADFDGDEMNMHLPQSMETRAEVQELMMVPKMIVSPQANKPVMAIVQDTLL 520

Query: 533  GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
             CR ITKRDTFI KDVFMNILMW  ++DGKVP+P I+KP PLWTGKQVF++  P  +N+ 
Sbjct: 521  ACRLITKRDTFITKDVFMNILMWHTNWDGKVPKPAIIKPEPLWTGKQVFSMFTP-DVNVI 579

Query: 593  RTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARK 652
            RT+AW  D D    +  D  VR+E+GEL++G +CKK++G+  G LIH IWEE GP AAR 
Sbjct: 580  RTSAWARDADDMDFSVDDVGVRVERGELITGIMCKKSMGSGGGGLIHTIWEEWGPTAARD 639

Query: 653  FLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEP 712
            F+   QWL+NYWLL   F+IGI DTIAD +TM+TINDTI+KAK++VK ++   Q   LE 
Sbjct: 640  FVSQVQWLLNYWLLHYGFTIGISDTIADDRTMQTINDTITKAKSDVKEVVAIYQRGELEM 699

Query: 713  EPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 772
            +PG T  +SFE KVNQ+LN ARD AG+SAQ SL ++NN+K  VTAGSKGSF+NISQM AC
Sbjct: 700  QPGMTAQQSFEQKVNQILNKARDNAGNSAQTSLDDTNNVKMTVTAGSKGSFLNISQMIAC 759

Query: 773  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 832
            VGQQNVEGKRIPFGF DR+LPHF K+D GPE+RGFVENSYLRGLTPQEFFFHAMGGREGL
Sbjct: 760  VGQQNVEGKRIPFGFTDRSLPHFAKNDLGPEARGFVENSYLRGLTPQEFFFHAMGGREGL 819

Query: 833  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLD 892
            IDTAVKTSETGYIQRRLVKAMEDI+VKYDGTVRNS GDVIQFLYGEDGMD+ ++ESQ +D
Sbjct: 820  IDTAVKTSETGYIQRRLVKAMEDIIVKYDGTVRNSAGDVIQFLYGEDGMDATYVESQKID 879

Query: 893  SLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLA 952
            +L+  + +F K F  + DE  +   +M +  ++DL    E R + + E ++L  DR +L 
Sbjct: 880  TLRDSREKFRKRFHMDPDEPGFGRGWMSEAQVNDLANSAEKRALLEEEWERLLKDREELR 939

Query: 953  TEIATSGDSSWPLPVNLKRLIWNAQKTFKV-------DPRRPSDMHPMEVVEAVDKLQER 1005
              ++T GD +  LPVNLKR+IWNAQ  ++          R   ++  + V+E+V  +   
Sbjct: 940  RTMST-GDQNVHLPVNLKRIIWNAQNNYRKVKDASSGGSRGGEELQAVHVIESVKSMLNG 998

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
            L VVPG D LSVEAQ+NAT+ F  L+RST ++KRV+ E RL+  AF WVIGE+ESRF  +
Sbjct: 999  LVVVPGRDALSVEAQRNATILFFALVRSTLSAKRVMSEFRLSPAAFNWVIGEVESRFKVA 1058

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
            L  PG+ IG VAAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+IN+AKKIKTPSL
Sbjct: 1059 LAPPGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIAKKIKTPSL 1118

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +V L+  +   +  AKNVQ  LEYTTL SV  A+EVWYDPDP  T+IEED EFV+SYYEM
Sbjct: 1119 TVALRKDLAGDRAMAKNVQSILEYTTLHSVAAASEVWYDPDPTDTVIEEDKEFVRSYYEM 1178

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PDED+ P ++SPWLLRIELNREMMVDKKL MA +AE+INQ+F +DL+CIFNDDN++KLIL
Sbjct: 1179 PDEDVDPSRMSPWLLRIELNREMMVDKKLLMADIAERINQDFQEDLSCIFNDDNSEKLIL 1238

Query: 1246 RIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR--------------------- 1284
            RIR++++E    E    + ED+VFLKK+ES MLT +ALR                     
Sbjct: 1239 RIRLLDNEMGDKEAGPSTTEDEVFLKKLESQMLTNLALRGIPDIKKVFIREANVMGLDPV 1298

Query: 1285 ---------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
                           GVNLL VM HEDVD  RTTSNHLIE+I+VLGIEAVR  LL ELR 
Sbjct: 1299 TETFTKKSEWMLDTEGVNLLEVMNHEDVDFTRTTSNHLIEVIQVLGIEAVRNTLLKELRG 1358

Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
            VI FDGSYVNYRHLAIL + MTYRGHLM+ITRHGINR +TGP+MRCSFEETVDILL+AA 
Sbjct: 1359 VIEFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRVETGPLMRCSFEETVDILLEAAA 1418

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARS 1449
            F+E D + G++ENIMLGQ  P+GTG+  L+LN++MLK A++L L     GL  G+TP R 
Sbjct: 1419 FSERDGMNGLSENIMLGQFCPLGTGEFGLHLNEDMLKEAVDLDLGLSEGGLGVGVTPGRG 1478

Query: 1450 PVSGTPYHDGMMSPGYLFSPNLRLSPVTDA-QFSPYVGGMAFSPTSSPGYSPSSPGYSPS 1508
                TP  +G MSP +L SP   +SP  D+ +FSP   G  +   +  G    SPGYSP+
Sbjct: 1479 I---TPGREGAMSPSFLLSPTAHMSPFDDSMRFSPQ--GTDYGSHAGGG---QSPGYSPT 1530

Query: 1509 SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY 1568
            SP YSPTSP YSPTSP YSPTSP YSPTSP YSP+SP YSPTSPAYSPTSP+YSPTSP+Y
Sbjct: 1531 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1590

Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1628
            SPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSPAYSPTSPAYSPTS
Sbjct: 1591 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTS 1650

Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT-SPSYSPTSPTY 1687
            P+YSPTSP+YSPTSP YSPTSP YSPTSP YSPTSP YSPTS G S   +P+ SPTSP Y
Sbjct: 1651 PAYSPTSPAYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSLGLSDADAPTRSPTSPQY 1710

Query: 1688 SPTS 1691
            SP++
Sbjct: 1711 SPST 1714



 Score =  277 bits (709), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 170/267 (63%), Positives = 190/267 (71%), Gaps = 35/267 (13%)

Query: 1544 SPGYSPTSPAYSPTSPSY--SPTSPSYSPTSPS--YSPTSPSYSP-----TSPSYSPTSP 1594
            +PG   T       SPS+  SPT+   SP   S  +SP    Y        SP YSPTSP
Sbjct: 1474 TPGRGITPGREGAMSPSFLLSPTA-HMSPFDDSMRFSPQGTDYGSHAGGGQSPGYSPTSP 1532

Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1654
            +YSPTSP+YSPTSPAYSPTSPAYSPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+YSP
Sbjct: 1533 AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1592

Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
            TSP+YSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP             AYSP+SP  
Sbjct: 1593 TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP-------------AYSPTSPAY 1639

Query: 1715 SPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP- 1772
            SP SP YSPTSP YSPTS +YSPTSP YSP+SP YSP+SP         YSP+SPQYSP 
Sbjct: 1640 SPTSPAYSPTSPAYSPTSPAYSPTSPQYSPTSPQYSPTSP--------QYSPTSPQYSPT 1691

Query: 1773 SAGYSPS-APGYSPSSTSQYTPQTNRD 1798
            S G S + AP  SP+S  QY+P T  D
Sbjct: 1692 SLGLSDADAPTRSPTS-PQYSPSTEAD 1717


>gi|303272485|ref|XP_003055604.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226463578|gb|EEH60856.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1694

 Score = 2182 bits (5655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1079/1715 (62%), Positives = 1305/1715 (76%), Gaps = 93/1715 (5%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRK 63
            RFP+S AE+ +V+ VQFG+LSP+EIR+MSV ++E  ET E+G+PK GGLSDPR+GT+DR 
Sbjct: 6    RFPHSTAELRRVKAVQFGVLSPEEIRKMSVCEVETAETYEKGRPKRGGLSDPRMGTMDRS 65

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE-DDHKFK 122
            M CET   +  + PG+FGHLELAKP++H GF+  V+ ++R V ++ SK+L D+ DD +F 
Sbjct: 66   MTCETDGMDSKDTPGYFGHLELAKPVYHHGFINNVVRVLRCVGYSSSKLLLDKNDDPRFV 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEG 182
            + +KIRNPK+RLKK  D CK K  C                        G  QP+  ++G
Sbjct: 126  EIMKIRNPKHRLKKFADTCKTKKICPS---------------------TGTPQPQYRLDG 164

Query: 183  MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
            MK+ AE+K    + +D   +    ERK  +TAE  L +LK ISDEDC  LGL+P++A P 
Sbjct: 165  MKITAEFKVSADE-EDSGMMSYGGERKIQVTAEMALKILKNISDEDCIALGLSPEHAHPS 223

Query: 243  WMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
            W ILQVLP+PP PVRPS          DDLT +L  I+R N+NL++QE NGAP H+I EF
Sbjct: 224  WYILQVLPVPPHPVRPSVAFDASTRSEDDLTVKLMEIVRMNKNLQKQEMNGAPQHVIGEF 283

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
             +LLQ+HI T+ DN + GQPR+  RSGRPIKSI  RLK K GRIRGNLMGKRVDFSARTV
Sbjct: 284  TELLQYHIMTFMDNTVAGQPRSLTRSGRPIKSISERLKGKNGRIRGNLMGKRVDFSARTV 343

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
            ITPDP + +D+LGVPWSIALN+TYPE VTPYNIERL++LVE GPHPPPG+TGAKYIIR+D
Sbjct: 344  ITPDPNLMLDELGVPWSIALNMTYPEMVTPYNIERLRKLVENGPHPPPGETGAKYIIRED 403

Query: 413  GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
            GQRLDLR+LKK SD  LE GY+VERH+ +GD VLFNRQPSLHKMSIMGHR++IMPYSTFR
Sbjct: 404  GQRLDLRFLKKESDKRLEYGYRVERHMINGDCVLFNRQPSLHKMSIMGHRVRIMPYSTFR 463

Query: 473  LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
            +N+SVT PYNADFDGDEMNMH+PQS ETRAEV ELMMVPK IVSPQ+N+PVM IVQDTLL
Sbjct: 464  MNISVTPPYNADFDGDEMNMHLPQSLETRAEVQELMMVPKMIVSPQANKPVMAIVQDTLL 523

Query: 533  GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
              R +TKRDTFI+KDVFMNILMW E++DGKVP+P ILKP PLWTGKQVF + +P  ++L 
Sbjct: 524  ASRLMTKRDTFIKKDVFMNILMWLENWDGKVPKPAILKPEPLWTGKQVFTMFLP-DVSLT 582

Query: 593  RTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARK 652
            + +AW  DND    +  DT VRIEKGEL++G LCKKTLG+  G LIHVIWEE GP AAR 
Sbjct: 583  KQSAWAKDNDPHDFSVEDTGVRIEKGELITGILCKKTLGSGGGGLIHVIWEEWGPTAARG 642

Query: 653  FLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEP 712
            F+   QWL+NYWLLQ+ F+IGI DTIAD  TM +INDTI+KAK +VK +I  AQ  +LE 
Sbjct: 643  FVSQVQWLLNYWLLQHGFTIGISDTIADDGTMNSINDTITKAKQDVKEVIALAQTNALEL 702

Query: 713  EPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 772
            +PG TM +SFE KVNQ+LN ARD AG+SAQ SL ++NN+K  VTAGSKGSF+NISQM AC
Sbjct: 703  QPGMTMQQSFEQKVNQILNKARDNAGNSAQGSLDDTNNVKMTVTAGSKGSFLNISQMIAC 762

Query: 773  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 832
            VGQQNVEGKRIPFGF  R+LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL
Sbjct: 763  VGQQNVEGKRIPFGFDGRSLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 822

Query: 833  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLD 892
            IDTAVKTSETGYIQRRLVKAMEDI+VKYDGTVRNS GDVIQFLYGEDGMD+ ++ESQ +D
Sbjct: 823  IDTAVKTSETGYIQRRLVKAMEDIIVKYDGTVRNSAGDVIQFLYGEDGMDATYVESQKID 882

Query: 893  SLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLA 952
            +L+  K +F + F  + DE N+   +M +   +DL    E R + +AE ++L+ DR +L 
Sbjct: 883  TLRHDKEKFKRTFHLDPDEPNFGKGWMSEAQANDLANSVEKRALLEAEWEQLKLDRAELH 942

Query: 953  TEIATSGDSSWPLPVNLKRLIWNAQKTFKV-----DPRRPSD-MHPMEVVEAVDKLQERL 1006
             ++ T+GD S  LPVNLKR++WNAQK + +      P R  D +  + V+E+V  +   L
Sbjct: 943  -KVMTTGDPSVHLPVNLKRIVWNAQKNYGLVKDTSAPGRERDELQAVNVIESVRSMLNGL 1001

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             VVPG D LS+EAQ+N+T+ F  L+RST ++KRV+K+ +L+  AF WV+GE+ESRF  +L
Sbjct: 1002 TVVPGGDELSLEAQRNSTILFFALVRSTLSAKRVMKDFKLSPAAFNWVVGEVESRFKMAL 1061

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
              PG+ IG VAAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+AKKIKTPSL+
Sbjct: 1062 APPGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKKIKTPSLT 1121

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            V L+  +   +  AKNVQ +LEYTTL SV   +E++YDPDP  T+IEED EFV++YYEMP
Sbjct: 1122 VALRKDLAGDRAMAKNVQASLEYTTLHSVAAVSEIYYDPDPTDTVIEEDKEFVRAYYEMP 1181

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            DE++ P ++SPW+LRIELNREMMVDKKL MA VAE+IN++F DDL+CIFNDDN++KLI+R
Sbjct: 1182 DEEVDPARMSPWVLRIELNREMMVDKKLLMADVAERINEDFQDDLSCIFNDDNSEKLIVR 1241

Query: 1247 IRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR---------------------- 1284
            IRIMN E  K E      ED+VFLK++E+ +L  +ALR                      
Sbjct: 1242 IRIMNSELEK-EQGASQTEDEVFLKRLEAQLLNSLALRGIPDIKKVFIREANTMGLDPET 1300

Query: 1285 --------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
                          GVNLL VM HEDVD  RTTSNHLIE+I+VLGIEAVR ALL ELR V
Sbjct: 1301 ETYAKKSEWMLDTEGVNLLEVMNHEDVDFTRTTSNHLIEVIQVLGIEAVRNALLKELRGV 1360

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            I FDGSYVNYRHLAIL + MTYRGHLM+ITRHGINR +TGP+MRCSFEETVDIL++AA F
Sbjct: 1361 IEFDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRVETGPLMRCSFEETVDILMEAAAF 1420

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSY-MEGLEFGMTPARS 1449
            AE D + G++ENIMLGQ  P+GTG+  L+LN+++LK A++L L ++  + L  G TPAR 
Sbjct: 1421 AERDRMSGLSENIMLGQFCPLGTGEFGLHLNEDVLKEAVDLDLTTHSADALGAGTTPARG 1480

Query: 1450 PVSGTPYHDGMMSPGYLFSPNLRLSPVTDA-QFSPYVGGMAFSPTSSPGYSPSSPGYSPS 1508
                TP   G  SP +L SP    SP  D  +FSPY      +     G      G+SP+
Sbjct: 1481 T---TPGGVGSASPSFLLSPQAHASPFDDTMRFSPY------TEGGGGGGGGDGMGFSPT 1531

Query: 1509 SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY 1568
            SPGYSPTSP YSPTSP YSPTSP YSPTSP  +P+SP YSPTSPAYSPTSP+YSPTSP+Y
Sbjct: 1532 SPGYSPTSPAYSPTSPAYSPTSPAYSPTSP--APTSPAYSPTSPAYSPTSPAYSPTSPAY 1589

Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1628
            SPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSPAYSPTSPAYSPTS
Sbjct: 1590 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTS 1649

Query: 1629 PSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSP 1661
            P YSPTS   S    +P+ SPTSP YSPT  ++SP
Sbjct: 1650 PQYSPTSVGLSDVENAPTRSPTSPQYSPTEGAFSP 1684



 Score =  242 bits (617), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/169 (73%), Positives = 140/169 (82%), Gaps = 12/169 (7%)

Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1627
            +SPTSP YSPTSP+YSPTSP+YSPTSP+YSPTSP+  PTSPAYSPTSPAYSPTSPAYSPT
Sbjct: 1528 FSPTSPGYSPTSPAYSPTSPAYSPTSPAYSPTSPA--PTSPAYSPTSPAYSPTSPAYSPT 1585

Query: 1628 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTY 1687
            SP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSP YSPTSP+YSPTSP Y
Sbjct: 1586 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1645

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSP 1736
            SPTSP Y+P S   S           +  A   SPTSP YSPT  ++SP
Sbjct: 1646 SPTSPQYSPTSVGLS----------DVENAPTRSPTSPQYSPTEGAFSP 1684



 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 120/172 (69%), Positives = 136/172 (79%), Gaps = 18/172 (10%)

Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1669
            +SPTSP YSPTSPAYSPTSP+YSPTSP+YSPTSP+  PTSP+YSPTSP+YSPTSPAYSPT
Sbjct: 1528 FSPTSPGYSPTSPAYSPTSPAYSPTSPAYSPTSPA--PTSPAYSPTSPAYSPTSPAYSPT 1585

Query: 1670 SPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYS 1728
            SP YSPTSP+YSPTSP YSPTSP             AYSP+SP  SP SP YSPTSP YS
Sbjct: 1586 SPAYSPTSPAYSPTSPAYSPTSP-------------AYSPTSPAYSPTSPAYSPTSPAYS 1632

Query: 1729 PTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGN-PDYSPSSPQYSPSAG-YSP 1778
            PTS +YSPTSP+YSP+SP YSP+S   +   N P  SP+SPQYSP+ G +SP
Sbjct: 1633 PTSPAYSPTSPAYSPTSPQYSPTSVGLSDVENAPTRSPTSPQYSPTEGAFSP 1684



 Score =  140 bits (354), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/129 (62%), Positives = 98/129 (75%), Gaps = 10/129 (7%)

Query: 1673 YSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP------SLAYSPSSPRLSPASP-YSPTSP 1725
            +SPTSP YSPTSP YSPTSP+Y+P S  YSP      S AYSP+SP  SP SP YSPTSP
Sbjct: 1528 FSPTSPGYSPTSPAYSPTSPAYSPTSPAYSPTSPAPTSPAYSPTSPAYSPTSPAYSPTSP 1587

Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYS 1784
             YSPTS +YSPTSP+YSP+SP YSP+SP  +   +P YSP+SP YSP++  YSP++P YS
Sbjct: 1588 AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS-PTSPAYSPTSPAYSPTSPAYSPTSPAYS 1646

Query: 1785 PSSTSQYTP 1793
            P+S  QY+P
Sbjct: 1647 PTS-PQYSP 1654


>gi|145351142|ref|XP_001419944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580177|gb|ABO98237.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1646

 Score = 2162 bits (5602), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1081/1678 (64%), Positives = 1288/1678 (76%), Gaps = 101/1678 (6%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRK 63
            RFP+S AE+ +V  VQFG+LSPDEIR+MSV  IE  ET E+G+PK GGLSDPR+GT+DR 
Sbjct: 6    RFPHSTAELCRVNAVQFGVLSPDEIRKMSVCAIETSETYEKGRPKRGGLSDPRMGTMDRG 65

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADED-DHKFK 122
              CET   +  + PG+FGHLELAKP++H GF+  VL I+R V ++ S++L  +D D KF 
Sbjct: 66   AVCETDGCDSVQTPGYFGHLELAKPVYHHGFINVVLRILRCVGYSSSQLLLHKDEDPKFA 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEG 182
            Q ++I+NPKNRLKK+ DACK K+ C               P        G  QP+  +EG
Sbjct: 126  QLMRIKNPKNRLKKLTDACKTKSVC---------------PY------TGTAQPQYRLEG 164

Query: 183  MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
            MK+ AE+K +     D+E LPE  ERK  +TAER L +LK ISDEDC+ LGL+P++ARPD
Sbjct: 165  MKITAEFKHR-----DEELLPEGGERKVIVTAERALQILKAISDEDCRALGLDPEHARPD 219

Query: 243  WMILQVLPIPP----------PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
            W ILQV+P+PP             R  DDLT +L  I+R N+NL RQE+NGAP H+I EF
Sbjct: 220  WFILQVMPVPPPPVRPSVSFDASTRSEDDLTVKLMEIVRTNKNLERQEQNGAPQHVILEF 279

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
             +LLQ+HI T+ DN + G PRA  RSGR IKSI  RLK K GRIRGNLMGKRVDFSARTV
Sbjct: 280  TELLQYHIMTFMDNTVAGMPRALTRSGRSIKSISERLKGKAGRIRGNLMGKRVDFSARTV 339

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
            ITPDP + +D+LGVPWSIALN+TYPETVTPYNI+RL+ LVE GPHPPPG+TGA+YIIR+D
Sbjct: 340  ITPDPNLMLDELGVPWSIALNMTYPETVTPYNIDRLQRLVENGPHPPPGETGARYIIRED 399

Query: 413  GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
            GQRLDLR+LKKSS+  LE GYKVERH+ +GD VLFNRQPSLHKMSIMGHR++IMPYSTFR
Sbjct: 400  GQRLDLRFLKKSSEKRLEYGYKVERHMVNGDVVLFNRQPSLHKMSIMGHRVRIMPYSTFR 459

Query: 473  LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
            LNLSVT PYNADFDGDEMNMH+PQS+ETRAEV ELMMVPK IVSPQ+N+PVM IVQDTLL
Sbjct: 460  LNLSVTPPYNADFDGDEMNMHLPQSYETRAEVKELMMVPKMIVSPQANKPVMAIVQDTLL 519

Query: 533  GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
            GCR ITKRDTFI KDVFMNI+MW ED+DGKVP+P ILKP+PLWTGKQVF++++PK +NL 
Sbjct: 520  GCRLITKRDTFITKDVFMNIIMWLEDWDGKVPKPAILKPQPLWTGKQVFSMMLPK-VNLL 578

Query: 593  RTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARK 652
            RT+AW  D+D    +  DT VRIE+GELL+GTLCKKT+G+  G LIHV WEE GP AAR 
Sbjct: 579  RTSAWAKDSDDMAFSVDDTGVRIEQGELLTGTLCKKTMGSGGGGLIHVTWEEWGPIAARG 638

Query: 653  FLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEP 712
             +  TQ LVNYW+L + F++GI DTIAD +TM +IN+TI+KAK +VK +IK AQ+  LE 
Sbjct: 639  LISQTQTLVNYWVLHHGFTVGIADTIADDETMFSINNTITKAKADVKEVIKLAQNNELEL 698

Query: 713  EPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 772
            +PG TM +SFE KVNQ+LN ARD AG+SAQ SL ++NN+K MVTAGSKGSF+NISQM AC
Sbjct: 699  QPGMTMQQSFEQKVNQILNKARDNAGNSAQNSLMDTNNVKMMVTAGSKGSFLNISQMIAC 758

Query: 773  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 832
            VGQQNVEGKRIP+GF  RTLPHF+KDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGL
Sbjct: 759  VGQQNVEGKRIPYGFKGRTLPHFSKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 818

Query: 833  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLD 892
            IDTAVKTSETGYIQRRLVKAMED++VKYDGTVRNS+GDVIQFLYGEDGMD+  IESQ++D
Sbjct: 819  IDTAVKTSETGYIQRRLVKAMEDVVVKYDGTVRNSVGDVIQFLYGEDGMDATMIESQSID 878

Query: 893  SLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLA 952
            +L+    EF   F  + D   +N  ++ +E   +L    ++R++ DAE  +L+ DR +L 
Sbjct: 879  TLRFSVKEFAAKFHIDPDVPGFNNGWLSEEQASELAHTAKVREILDAEWDRLQRDRVELR 938

Query: 953  TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP----SDMHPMEVVEAVDKLQERLKV 1008
            T I  +GD    LPVN+KR++WNAQK + +   RP     ++    ++E+V +L  +L V
Sbjct: 939  T-ICPTGDPHVHLPVNMKRILWNAQKQYGL--YRPDSGEEEVKVTHIIESVAELLPKLIV 995

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            VPG DPLSVEAQ+N T+ F   +R+  A+KRVLKEH+LTR  F+WVIGEIESRF  +L  
Sbjct: 996  VPGTDPLSVEAQRNGTMLFFAHVRANLAAKRVLKEHKLTRAGFDWVIGEIESRFKMALAP 1055

Query: 1069 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1128
            PG+ IG VAAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN+AK IKTPSL++ 
Sbjct: 1056 PGDGIGTVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINIAKSIKTPSLTIA 1115

Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1188
            LKP +   + RAK+ Q +LEYTTL SV   TEV YDPDP  T+IEED EFV++YYEMPDE
Sbjct: 1116 LKPELAGDRTRAKDCQASLEYTTLHSVAAVTEVHYDPDPTDTVIEEDREFVRAYYEMPDE 1175

Query: 1189 DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
            D+ P ++SPWLLRIELNREMMVDKKL MA VAE+IN++F  DL+CIFNDDN++KL+LRIR
Sbjct: 1176 DVDPSRMSPWLLRIELNREMMVDKKLLMADVAERINEDFAGDLSCIFNDDNSEKLVLRIR 1235

Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG----------------------- 1285
            IMN E  K E  D S ED+VFLK++E+ ML+ +ALRG                       
Sbjct: 1236 IMNPEGVKYE--DASTEDEVFLKRLETQMLSNLALRGIPDIKKVFIREAKQNAINSKTEL 1293

Query: 1286 -------------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
                         VNLL VM H DVD  RTTSNHLIE+I+VLGIEAVR  LL ELR VI 
Sbjct: 1294 FEKTTEWMLDTEGVNLLEVMAHPDVDFTRTTSNHLIEVIQVLGIEAVRNTLLRELRGVIE 1353

Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
            FDGSYVNYRHLAIL + MTYRGHLM+ITRHGINR +TGP+MRCSFEETVDIL++A+ F+E
Sbjct: 1354 FDGSYVNYRHLAILVEVMTYRGHLMSITRHGINRVETGPLMRCSFEETVDILMEASAFSE 1413

Query: 1393 SDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQL---PSYMEGLEFGMTPARS 1449
             D + G +ENIMLGQ  PIGTG+  L+LNDE+L++A+EL+L    S   G    MTP R 
Sbjct: 1414 RDNMTGPSENIMLGQFCPIGTGEFKLHLNDELLQDAVELELFGDGSRTPGHGGMMTPGR- 1472

Query: 1450 PVSGTPYHDGMMSPGYLFSPNLRLSPV-TDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPS 1508
               GTP   G  SP +L SP    SP  T   FSPY  GMAFSP  SPG      G+   
Sbjct: 1473 --DGTPGW-GSKSPSFLLSPGGHQSPFDTSMAFSPYSDGMAFSPGMSPG------GFG-- 1521

Query: 1509 SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY 1568
              GYSPTSP YSPTSP YSPTSP YSPTSP YSP+SP YSPTSPAYSPTSP+YSPTSP+Y
Sbjct: 1522 --GYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1579

Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSPAYSPTSPAYSP
Sbjct: 1580 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1637



 Score =  184 bits (467), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 115/191 (60%), Positives = 133/191 (69%), Gaps = 19/191 (9%)

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY-SP--TSPSYSPTSPSYSPTSPSYSPTS 1600
            +PG+          +P +   SPS+  +   + SP  TS ++SP S   +  SP  SP  
Sbjct: 1461 TPGHGGMMTPGRDGTPGWGSKSPSFLLSPGGHQSPFDTSMAFSPYSDGMA-FSPGMSPGG 1519

Query: 1601 -PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1659
               YSPTSPAYSPTSPAYSPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+Y
Sbjct: 1520 FGGYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1579

Query: 1660 SPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
            SPTSPAYSPTSP YSPTSP        YSPTSP+Y+P S       AYSP+SP  SP SP
Sbjct: 1580 SPTSPAYSPTSPAYSPTSP-------AYSPTSPAYSPTSP------AYSPTSPAYSPTSP 1626

Query: 1720 -YSPTSPNYSP 1729
             YSPTSP YSP
Sbjct: 1627 AYSPTSPAYSP 1637



 Score =  179 bits (455), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 111/177 (62%), Positives = 128/177 (72%), Gaps = 19/177 (10%)

Query: 1565 SPSYSPTSPSYSPTSPSY-SP--TSPSYSPTSPSYSPTSPSYSPTS-PAYSPTSPAYSPT 1620
            +P +   SPS+  +   + SP  TS ++SP S   +  SP  SP     YSPTSPAYSPT
Sbjct: 1475 TPGWGSKSPSFLLSPGGHQSPFDTSMAFSPYSDGMA-FSPGMSPGGFGGYSPTSPAYSPT 1533

Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1680
            SPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSP YSPTSP  
Sbjct: 1534 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP-- 1591

Query: 1681 SPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSP 1736
                  YSPTSP+Y+P S       AYSP+SP  SP SP YSPTSP YSPTS +YSP
Sbjct: 1592 -----AYSPTSPAYSPTSP------AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1637



 Score =  145 bits (365), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/180 (52%), Positives = 120/180 (66%), Gaps = 22/180 (12%)

Query: 1621 SPAYSPTSPSYSPTSPSY-SP--TSPSYSPTSPSYSPTSPSYSPTS-PAYSPTSPGYSPT 1676
            +P +   SPS+  +   + SP  TS ++SP S   +  SP  SP     YSPTSP YSPT
Sbjct: 1475 TPGWGSKSPSFLLSPGGHQSPFDTSMAFSPYSDGMA-FSPGMSPGGFGGYSPTSPAYSPT 1533

Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYS 1735
            SP+YSPTSP YSPTSP             AYSP+SP  SP SP YSPTSP YSPTS +YS
Sbjct: 1534 SPAYSPTSPAYSPTSP-------------AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1580

Query: 1736 PTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTPQ 1794
            PTSP+YSP+SP YSP+SP  +   +P YSP+SP YSP++  YSP++P YSP+S + Y+P+
Sbjct: 1581 PTSPAYSPTSPAYSPTSPAYS-PTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA-YSPK 1638


>gi|412992604|emb|CCO18584.1| RNA polymerase II largest subunit [Bathycoccus prasinos]
          Length = 1667

 Score = 2139 bits (5543), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1064/1699 (62%), Positives = 1286/1699 (75%), Gaps = 102/1699 (6%)

Query: 31   MSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMF 90
            MSV +IE  ET E+GKPK GGLSDPR+GT+DR   CET  A+    PG+FGHLELAKP++
Sbjct: 1    MSVCEIETSETYEKGKPKRGGLSDPRMGTMDRGTVCETDGADSVHNPGYFGHLELAKPVY 60

Query: 91   HIGFMKTVLSIMRSVCFNCSKILAD-EDDHKFKQALKIRNPKNRLKKILDACKNKTKCEG 149
            H GF+  VL ++R V ++ S+IL D E D +F Q ++I+NPK+RLKK+ DACK +T+C  
Sbjct: 61   HHGFLNVVLKVLRCVGYSSSRILLDPETDARFNQIMRIQNPKHRLKKLTDACKTRTECPH 120

Query: 150  GDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERK 209
                                  G  QP    EGMK+ A ++       D+E LP+  ERK
Sbjct: 121  ---------------------TGTAQPSYRCEGMKITANFEKC-----DEELLPDGGERK 154

Query: 210  QTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP----------PPVRPS 259
              +TAE+ L +LK ISDEDC+LLGL+P++ARPDW ILQV+PIPP             R  
Sbjct: 155  VVITAEKALQILKNISDEDCRLLGLDPEHARPDWFILQVMPIPPPPVRPSVSFDASTRSE 214

Query: 260  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
            DDLT +L  I+R N+NL+RQE+NGAPAH++ EFA+LLQ+HI T+ DN + GQPRA  RSG
Sbjct: 215  DDLTVKLMEIVRTNKNLQRQEQNGAPAHVVDEFAELLQYHIMTFMDNTVAGQPRAMTRSG 274

Query: 320  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
            RPIKSI  RLK K GRIRGNLMGKRVDFSARTVITPDP + +DQLGVPWSIALN+TYPET
Sbjct: 275  RPIKSISERLKGKAGRIRGNLMGKRVDFSARTVITPDPNLMLDQLGVPWSIALNMTYPET 334

Query: 380  VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHL 439
            VTPYNI+ L  LVE GPHPPPG+TGAKYIIR+DGQRLDLR+LKK+S+  LE GY+VERH+
Sbjct: 335  VTPYNIDELTRLVENGPHPPPGETGAKYIIREDGQRLDLRFLKKASEKKLEFGYRVERHM 394

Query: 440  NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 499
             + D VLFNRQPSLHKMSIMGHR++IMPYSTFR+N+SVT PYNADFDGDEMNMH+PQS+E
Sbjct: 395  KNDDVVLFNRQPSLHKMSIMGHRVRIMPYSTFRMNISVTPPYNADFDGDEMNMHLPQSYE 454

Query: 500  TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 559
            TRAEV ELMMVPK IVSPQ+N+PVM IVQDTLLGCRK+T R+TFI+KDVFMNI+MW E++
Sbjct: 455  TRAEVAELMMVPKMIVSPQANKPVMAIVQDTLLGCRKMTSRETFIKKDVFMNIIMWLENW 514

Query: 560  DGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGE 619
            DGKVP+P ILKP PLWTGKQV ++++P  INL RT++W  D D    +  DT VRIE+GE
Sbjct: 515  DGKVPKPAILKPEPLWTGKQVLSMMLP-HINLIRTSSWARDADDLDFSVDDTGVRIERGE 573

Query: 620  LLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 679
            L++GTLCKKT+G+  G LIHV WEE GP AAR  +   Q LVNYWLL + F+ GI DTIA
Sbjct: 574  LITGTLCKKTMGSGGGGLIHVTWEEWGPTAARNLVSEVQRLVNYWLLHHGFTCGIIDTIA 633

Query: 680  DAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGS 739
            D  TM TINDTI+KAK++VK +IK AQ+  LE +PG TM +SFE KVNQ+LN ARD+AG+
Sbjct: 634  DDGTMRTINDTITKAKSDVKAVIKLAQNGELESQPGMTMQQSFEQKVNQILNKARDDAGT 693

Query: 740  SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDD 799
            +AQ SL +SNN+K MV AGSKGSF+NISQM ACVGQQNVEGKRIP+GFVDR+LPHF+KDD
Sbjct: 694  AAQVSLKDSNNVKMMVQAGSKGSFLNISQMCACVGQQNVEGKRIPYGFVDRSLPHFSKDD 753

Query: 800  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
            +GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED++VK
Sbjct: 754  FGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVIVK 813

Query: 860  YDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYM 919
            YDGTVRNS+GDVIQFLYGEDGMD+  +ESQ +D+L++  ++F+  FR + D   WN  ++
Sbjct: 814  YDGTVRNSVGDVIQFLYGEDGMDATAVESQKVDTLRLSNAQFEAKFRVDPDVPGWNDGWL 873

Query: 920  LQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKT 979
              E  + +   +E R + D E + L +DR  L   +A +GD    LPVNLKR+IWNAQK 
Sbjct: 874  SDERAEAISRDQEKRQLLDLEWETLLSDRDNLRYTLA-NGDPGVHLPVNLKRIIWNAQKE 932

Query: 980  FKVDPRRP-------SDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 1032
            +  +P++        +++ P  ++  V  L  +L VVPG+D LS+EAQ+NAT+ F   +R
Sbjct: 933  Y-ANPKKSDTKAFMENELDPDYIITCVRDLLSKLIVVPGKDELSIEAQRNATILFYAQVR 991

Query: 1033 STFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1092
            +  A+KRV+KEH+L   AF WVIGEIESRF Q+L  PG+ IG VAAQSIGEPATQMTLNT
Sbjct: 992  ACLATKRVMKEHKLGVSAFNWVIGEIESRFKQALAPPGDGIGTVAAQSIGEPATQMTLNT 1051

Query: 1093 FHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTL 1152
            FH+AGVSAKNVTLGVPRL+EIIN+AK IKTPSL++ L+  + S +  AKNVQ  LEYTTL
Sbjct: 1052 FHFAGVSAKNVTLGVPRLKEIINIAKSIKTPSLTIALRKDLASDRGHAKNVQATLEYTTL 1111

Query: 1153 RSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDK 1212
             SV   TE+WYDPD   T+I  D EFVKSYYEMPDE+I P +ISPWLLRIELNREMMVDK
Sbjct: 1112 ASVAAMTEIWYDPDVQDTVIPFDKEFVKSYYEMPDEEIDPNRISPWLLRIELNREMMVDK 1171

Query: 1213 KLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKK 1272
            KLSMA VAE+I++EF DD+  IFNDDN++KLILR+R++  E    + ++   ED+VFL++
Sbjct: 1172 KLSMADVAERISEEFQDDIHVIFNDDNSEKLILRLRLITPEGKAADADEGVIEDEVFLRR 1231

Query: 1273 IESNMLTEMALRGV------------------------------------NLLAVMCHED 1296
            IE+ +L+ +ALRG+                                    NLL VM H D
Sbjct: 1232 IEAQLLSTLALRGIPDIKKVFIREANSTQLNEATGTFEKHSEWMLDTEGCNLLEVMAHPD 1291

Query: 1297 VDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1356
            VD  RTTSNHL+E+I +LGIEAVR ALL ELR VI FDGSYVNYRHLAIL + MTYRGHL
Sbjct: 1292 VDFSRTTSNHLVEVITILGIEAVRNALLKELRGVIEFDGSYVNYRHLAILVEVMTYRGHL 1351

Query: 1357 MAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDC 1416
            M+ITRHGINR +TGP+MRCSFEETVDIL++AA F+E D + GV+ENIMLGQ  P+GTG+ 
Sbjct: 1352 MSITRHGINRAETGPLMRCSFEETVDILMEAAAFSERDGMTGVSENIMLGQFCPVGTGEF 1411

Query: 1417 SLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLF---SPNLRL 1473
             L+LN+EMLK+AI+L L    +G   GMT      S TP  + +M+PG      SP+  +
Sbjct: 1412 GLHLNEEMLKDAIDLDLFGNPQGAGAGMT------SATPGREMVMTPGGGVGARSPSFLI 1465

Query: 1474 SPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGY 1533
            SP      SP+   MAFSP +       +       PG+SP   GYSPTSPGYSPTSP Y
Sbjct: 1466 SPAR----SPFDASMAFSPANYDYGQGGA--GGAGLPGFSPGGAGYSPTSPGYSPTSPAY 1519

Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
            SPTSP YSP+SP YSPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTS
Sbjct: 1520 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTS 1579

Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT----SPSYSPTS 1649
            P+YSPTSP+YSPTSPAYSPTSPAYSPTSPAYSPTSP+YSPTSP YSPT    SPS SPTS
Sbjct: 1580 PAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPQYSPTGGTLSPSASPTS 1639

Query: 1650 PSYSPTSPSYSPTSPAYSP 1668
            P YSP+ P YSP +P  SP
Sbjct: 1640 PIYSPSGPQYSPQAPNMSP 1658



 Score =  219 bits (557), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 131/213 (61%), Positives = 150/213 (70%), Gaps = 27/213 (12%)

Query: 1586 SPSYSPTSPSYSP--TSPSYSPTSPAYSPTS------PAYSPTSPAYSPTSPSYSPTSPS 1637
            SPS+   SP+ SP   S ++SP +  Y          P +SP    YSPTSP YSPTSP+
Sbjct: 1460 SPSFL-ISPARSPFDASMAFSPANYDYGQGGAGGAGLPGFSPGGAGYSPTSPGYSPTSPA 1518

Query: 1638 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
            YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP     
Sbjct: 1519 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP----- 1573

Query: 1698 SAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP-YN 1755
                    AYSP+SP  SP SP YSPTSP YSPTS +YSPTSP+YSP+SP YSP+SP Y+
Sbjct: 1574 --------AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPQYS 1625

Query: 1756 AGGG--NPDYSPSSPQYSPSA-GYSPSAPGYSP 1785
              GG  +P  SP+SP YSPS   YSP AP  SP
Sbjct: 1626 PTGGTLSPSASPTSPIYSPSGPQYSPQAPNMSP 1658



 Score =  193 bits (490), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/216 (56%), Positives = 140/216 (64%), Gaps = 44/216 (20%)

Query: 1600 SPSYSPTSPAYSP--TSPAYSPTSPAYSPTS------PSYSPTSPSYSPTSPSYSPTSPS 1651
            SPS+   SPA SP   S A+SP +  Y          P +SP    YSPTSP YSPTSP+
Sbjct: 1460 SPSFL-ISPARSPFDASMAFSPANYDYGQGGAGGAGLPGFSPGGAGYSPTSPGYSPTSPA 1518

Query: 1652 YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS 1711
            YSPTSP+YSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP             AYSP+S
Sbjct: 1519 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP-------------AYSPTS 1565

Query: 1712 PRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP-- 1768
            P  SP SP YSPTSP YSPTS +YSPTSP+YSP+SP YSP+SP         YSP+SP  
Sbjct: 1566 PAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA--------YSPTSPAY 1617

Query: 1769 -----QYSPSAG-----YSPSAPGYSPSSTSQYTPQ 1794
                 QYSP+ G      SP++P YSPS   QY+PQ
Sbjct: 1618 SPTSPQYSPTGGTLSPSASPTSPIYSPSG-PQYSPQ 1652


>gi|348676924|gb|EGZ16741.1| RNA polymerase II large subunit [Phytophthora sojae]
          Length = 1852

 Score = 2135 bits (5533), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1090/1895 (57%), Positives = 1368/1895 (72%), Gaps = 169/1895 (8%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQ------------IEHGETTERGKPKPG 50
            T+F YS A + +V+ +QFG+ SP+EIR MSV +            I   ET   G P  G
Sbjct: 4    TQFSYSSARLRRVKYLQFGVFSPEEIRAMSVTKQTKVNDRIIPDGISRPETYLNGHPVIG 63

Query: 51   GLSDPRLGTIDRKMKCETCTANMA-------ECPGHFGHLELAKPMFHIGFMKTVLSIMR 103
            G+ DPR+GT D + +C+TC    +       +CPGHFGH+ELA+PM+H+GF+K VL I+R
Sbjct: 64   GIGDPRMGTCDFRARCKTCDCTYSGSGGKVNDCPGHFGHIELARPMYHMGFIKEVLKILR 123

Query: 104  SVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQ----- 158
            SVCF+CSK+L+DE DH+F+ A+KI+N K RLK + + C NK+ CE G+E D+        
Sbjct: 124  SVCFHCSKVLSDERDHRFRSAMKIKNGKRRLKAVYEICSNKSMCEYGEEADMEKMREDLN 183

Query: 159  --------DGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
                    D  +P +   GGCG  QPK   +G+K++ E+  Q       E +P   +RKQ
Sbjct: 184  IGLQGGLDDKSKPKEGGHGGCGGLQPKYRKQGIKLLVEFPEQ------MEDVPGSGDRKQ 237

Query: 211  TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------D 260
             L A +VL + K ISDEDC  LGL+P++ARPDW+++ ++P+PPP VRPS          D
Sbjct: 238  NLPAAKVLSIFKNISDEDCFALGLDPRWARPDWLVMTLMPVPPPHVRPSVAIDGMARGED 297

Query: 261  DLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGR 320
            DLTH LA I++ N  L    R G P+HII +F QLLQFH+AT+ +NE PG P+A QRSG+
Sbjct: 298  DLTHNLASIVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFLNNEQPGLPQAQQRSGK 357

Query: 321  PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETV 380
            P+K++  RL+ KEGRIRGNLMGKRVDFSARTVIT DP I IDQ+GVP SIA+NLT PE V
Sbjct: 358  PLKTLRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNIAIDQVGVPRSIAMNLTVPERV 417

Query: 381  TPYNIERLKELVEYGP--HPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERH 438
            TP+N+  + +L+  GP  HP     GAKYIIR+DG R+DLRY+K  SD  L+ G+ VERH
Sbjct: 418  TPFNMNYMHQLIANGPLEHP-----GAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERH 472

Query: 439  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
            L D D VLFNRQPSLHKMSIM HR+K+  +STFRLNLSVTSPYNADFDGDEMN+HVPQS 
Sbjct: 473  LRDDDLVLFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQSM 532

Query: 499  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
              RA+  ELMMV K I++PQSNRPVMGIVQD+LLG +K TKRD F+ KD  MN+LMW  +
Sbjct: 533  TARADAQELMMVHKVIITPQSNRPVMGIVQDSLLGAQKFTKRDIFLTKDWVMNLLMWVSN 592

Query: 559  FDGKVPQPTILKPR--------PLWTGKQVFNLIIPKQINLFRTAAWHADNDK-GILTAG 609
            +DGKVP P IL P+        P+WTGKQ+F+ I+P  IN    ++ H   +K   L+  
Sbjct: 593  WDGKVPTPAILVPKKGELGKYTPIWTGKQLFSTIVPG-INFTGFSSTHNSKEKFSDLSPI 651

Query: 610  DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
            D+ V I++GELL+G + KK +G+S G LIH+   E GPD  ++ LG  Q LVN WL+  +
Sbjct: 652  DSRVIIQQGELLAGIIDKKIIGSSAGGLIHITMLEKGPDETKRLLGAIQQLVNNWLVGRS 711

Query: 670  FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
            F++G+ DTIAD  T++TI D I++AK  V +L+ + Q   LE +PGRTM+ESFE  VN V
Sbjct: 712  FTVGVSDTIADVSTLKTIVDIITQAKVQVHDLVVRGQKGKLETQPGRTMVESFEGLVNIV 771

Query: 730  LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
            LNTARD+AG  AQ SL E+NN+KA VT+GSKGSFINISQ+ ACVGQQNVEGKRIP+GF  
Sbjct: 772  LNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVGQQNVEGKRIPYGFNH 831

Query: 790  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 849
            RTLPH+ KDD GPESRGFVENSYL+GLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRL
Sbjct: 832  RTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRL 891

Query: 850  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM 909
            VKAME +M +YDGTVRN+ G++IQFLYGEDGMD+VW+E Q  +S K+ K +F+K + F+ 
Sbjct: 892  VKAMESVMTRYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHKLNKVQFEKKYVFDP 951

Query: 910  DEENWN--PN-----YMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSG--- 959
             +E     PN     Y+  + I D++T +  + +   E+ +L+ DR  L   +A+ G   
Sbjct: 952  SDEELGCVPNCPDQLYLEPDIIKDIRTNQRTQQLLREELAQLQKDRVNLRVILASRGQGQ 1011

Query: 960  --DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
              D++  +PVN++RL+ NAQ+ F +D R+PS +HP  ++E V +L +++ VV G+D LS+
Sbjct: 1012 ESDNAAQIPVNIRRLVENAQQLFSIDMRKPSSLHPSRIIEGVKELCKKIIVVQGDDRLSI 1071

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ+NATLFF ILLRST ASK V  EHRLT  AFEW++GEIES+F  +LV+ GEM G V 
Sbjct: 1072 EAQENATLFFQILLRSTLASKCVTLEHRLTETAFEWLMGEIESKFTSALVSAGEMAGVVG 1131

Query: 1078 AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTK 1137
            AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EI+N+AK ++TPSL +FL P      
Sbjct: 1132 AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKDVRTPSLRIFLTPDCAHDA 1191

Query: 1138 ERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISP 1197
            ++AK +Q  LEYTTL  VT  T ++YDPDPM T++EED EFV SYYEMPDED  P   SP
Sbjct: 1192 DKAKFIQSQLEYTTLADVTANTSIYYDPDPMNTVVEEDQEFVASYYEMPDED-TPIARSP 1250

Query: 1198 WLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKG 1257
            WLLRIELN +MM DKKL+M  +A ++  E+  DL+CIF DDNAD+L+LRIRIM+DE  K 
Sbjct: 1251 WLLRIELNPKMMADKKLTMGEIAAQVESEYGQDLSCIFTDDNADRLVLRIRIMSDEEEKL 1310

Query: 1258 ELNDESA---EDDVFLKKIESNMLTEMALRGV---------------------------- 1286
            + + E+A   EDD FLK++E NMLT+M LRG+                            
Sbjct: 1311 QRSGETAVGQEDDTFLKRVEHNMLTQMKLRGIEGVKKVYIREGPSTHWFDDVGFKMMNEW 1370

Query: 1287 -------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVN 1339
                   NLL VMC+  VDA RT SN ++EII+VLGIEAVRRALL+E+R VISFDG+YVN
Sbjct: 1371 MLDTDGTNLLDVMCYPQVDATRTISNDIVEIIQVLGIEAVRRALLNEIRQVISFDGAYVN 1430

Query: 1340 YRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGV 1399
            YRHLA LCD MT+RGHLMAITRHGINR+D+GP++RCSFEETV+IL+DAA+F+E D L GV
Sbjct: 1431 YRHLACLCDVMTFRGHLMAITRHGINRDDSGPLVRCSFEETVEILMDAAMFSEGDPLTGV 1490

Query: 1400 TENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQ---LPSYMEGLEFGM-TPARSPVSGTP 1455
            +EN+MLGQLAP+GTG   L L+ + L NAIE +   +   M+GL+    +P + P  GTP
Sbjct: 1491 SENVMLGQLAPLGTGIMDLVLDAKKLANAIEYEASEIQQVMQGLDNEWRSPDQGP--GTP 1548

Query: 1456 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS---SPGYSPSSPGYSPSSPGY 1512
                 M+  +  +P    S    + FSP  GG +FSP +   SP  SP+SPG+  +SP +
Sbjct: 1549 -----MATPFASTPGFSAS----SPFSP--GGGSFSPAAGAFSPMASPASPGFMAASPAH 1597

Query: 1513 SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTS 1572
            SP SP  +PTSP YSP SP YSPTSP YSP+SP YSPTSPAYSPTSP+YSPTSP+YSPTS
Sbjct: 1598 SPASP-LNPTSPAYSPMSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTS 1656

Query: 1573 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYS 1632
            P+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSPAYSPTSPAYSPTSP+YS
Sbjct: 1657 PAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1716

Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
            PTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSPAY+P    YSPTSP+YSPTSP YSPTSP
Sbjct: 1717 PTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYTP---AYSPTSPAYSPTSPAYSPTSP 1773

Query: 1693 SYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPS 1751
                         AYSP+SP  SP SP YSPTSP YSPTS +YSPTSP+YSP+SP+    
Sbjct: 1774 -------------AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPS---- 1816

Query: 1752 SPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPS 1786
                       YSP+SP+Y+P+ GY+P+A GYSP+
Sbjct: 1817 -----------YSPASPEYNPTEGYNPTASGYSPT 1840



 Score =  294 bits (753), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 169/268 (63%), Positives = 204/268 (76%), Gaps = 27/268 (10%)

Query: 1530 SPGYSPTSPTYSP--SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1587
            SP   P +P  +P  S+PG+S +SP +SP   S+SP + ++SP +   SP SP +   SP
Sbjct: 1540 SPDQGPGTPMATPFASTPGFSASSP-FSPGGGSFSPAAGAFSPMA---SPASPGFMAASP 1595

Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
            ++SP SP  +PTSP+YSP SPAYSPTSPAYSPTSPAYSPTSP+YSPTSP+YSPTSP+YSP
Sbjct: 1596 AHSPASP-LNPTSPAYSPMSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1654

Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY 1707
            TSP+YSPTSP+YSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP             AY
Sbjct: 1655 TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP-------------AY 1701

Query: 1708 SPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPS 1766
            SP+SP  SP SP YSPTSP YSPTS +YSPTSP+YSP+SP YSP+SP       P YSP+
Sbjct: 1702 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP----AYTPAYSPT 1757

Query: 1767 SPQYSPSA-GYSPSAPGYSPSSTSQYTP 1793
            SP YSP++  YSP++P YSP+S + Y+P
Sbjct: 1758 SPAYSPTSPAYSPTSPAYSPTSPA-YSP 1784


>gi|301090036|ref|XP_002895253.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
            infestans T30-4]
 gi|262101000|gb|EEY59052.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
            infestans T30-4]
          Length = 1858

 Score = 2132 bits (5524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1090/1904 (57%), Positives = 1367/1904 (71%), Gaps = 172/1904 (9%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQ------------IEHGETTERGKPKPG 50
            T+F YS A + +V+ +QFG+ SP+EIR MSV +            I   ET   G P  G
Sbjct: 4    TQFSYSSARLRRVKYLQFGVFSPEEIRAMSVTKQTKVNDRIIPDGISRPETYLNGHPVIG 63

Query: 51   GLSDPRLGTIDRKMKCETCTANMA-------ECPGHFGHLELAKPMFHIGFMKTVLSIMR 103
            G+ DPR+GT D + +C+TC    +       +CPGHFGH+ELA+PM+H+GF+K VL I+R
Sbjct: 64   GIGDPRMGTCDFRARCKTCDCTYSGSGGKVNDCPGHFGHVELARPMYHMGFIKEVLKILR 123

Query: 104  SVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQ----- 158
             VCF+CSK+L+DE DH+F+ A+KI+N K RLK + + C NK+ CE G+E D+        
Sbjct: 124  CVCFHCSKVLSDERDHRFRSAMKIKNGKRRLKAVYEICSNKSMCEYGEEADMEKMREDLN 183

Query: 159  --------DGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
                    D  +P +   GGCG  QPK   +G+K++ E+  Q       E +P   +RKQ
Sbjct: 184  IGLQGGLDDKSKPKEGGHGGCGGLQPKYRKQGIKLLVEFPEQ------MEDVPGSGDRKQ 237

Query: 211  TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------D 260
             L A +VL + K ISDEDC  LGL+P++ARPDW+++ ++P+PPP VRPS          D
Sbjct: 238  NLPAAKVLSIFKNISDEDCFALGLDPRWARPDWLVMTLMPVPPPHVRPSVAIDGMARGED 297

Query: 261  DLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGR 320
            DLTH LA I++ N  L    R G P+HII +F QLLQFH+AT+ +NE PG P+A QRSG+
Sbjct: 298  DLTHNLASIVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFLNNEQPGLPQAQQRSGK 357

Query: 321  PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETV 380
            P+K++  RL+ KEGRIRGNLMGKRVDFSARTVIT DP + IDQ+GVP SIA+NLT PE V
Sbjct: 358  PLKTLRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLAIDQVGVPRSIAMNLTVPERV 417

Query: 381  TPYNIERLKELVEYGP--HPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERH 438
            TP+N+  + +L+  GP  HP     GAKYIIR+DG R+DLRY+K  SD  L+ G+ VERH
Sbjct: 418  TPFNMNYMHQLIANGPLEHP-----GAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERH 472

Query: 439  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
            L D D VLFNRQPSLHKMSIM HR+K+  +STFRLNLSVTSPYNADFDGDEMN+HVPQS 
Sbjct: 473  LRDDDLVLFNRQPSLHKMSIMSHRVKVFDWSTFRLNLSVTSPYNADFDGDEMNLHVPQSM 532

Query: 499  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
              RA+  ELMMV K I++PQSNRPVMGIVQD+LLG +K TKRD F+ KD  MN+LMW  +
Sbjct: 533  TARADAQELMMVHKVIITPQSNRPVMGIVQDSLLGAQKFTKRDIFLHKDWVMNLLMWVSN 592

Query: 559  FDGKVPQPTILKPR--------PLWTGKQVFNLIIPKQINLFRTAAWHADNDK-GILTAG 609
            +DGKVP P IL P+        P+WTGKQ+F+ I+P  IN    ++ H  ++K   L+  
Sbjct: 593  WDGKVPTPAILVPKKGELGKYTPIWTGKQIFSAIVPA-INFTGFSSTHKSSEKFSDLSPI 651

Query: 610  DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
            D+ V I++GELL+G + KK +G+S G L+H+   E GPD  ++ LG  Q LVN WL+  +
Sbjct: 652  DSRVIIQQGELLAGIIDKKIIGSSAGGLVHITMLEKGPDETKRLLGAIQQLVNNWLVGRS 711

Query: 670  FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
            F++G+ DTIAD  T++TI D I++AK  V +L+ + Q   LE +PGRTM+ESFE  VN V
Sbjct: 712  FTVGVSDTIADVSTLKTIVDIITQAKVQVHDLVVRGQKGKLETQPGRTMVESFEGLVNIV 771

Query: 730  LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
            LNTARD+AG  AQ SL E+NN+KA VT+GSKGSFINISQ+ ACVGQQNVEGKRIP+GF  
Sbjct: 772  LNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVGQQNVEGKRIPYGFNH 831

Query: 790  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 849
            RTLPH+ KDD GPESRGFVENSYL+GLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRL
Sbjct: 832  RTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRL 891

Query: 850  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM 909
            VKAME +M +YDGTVRN+ G++IQFLYGEDGMD+VW+E Q  +S K+ K +F+K + F+ 
Sbjct: 892  VKAMESVMTRYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESHKLNKVQFEKKYVFDP 951

Query: 910  DEENWN--PN-----YMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSG--- 959
             +E+    PN     Y+  + I D++T +  + +   E+ +L+ DR  L   +A+ G   
Sbjct: 952  SDEDLGCVPNCPDQLYLEPDIIKDIRTNQRTQQLLREELTQLQKDRVNLRVILASRGQGQ 1011

Query: 960  --DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
              D++  +PVN++RL+ NAQ+ F +D R+PS +HP  ++E V +L +++ VV G+D LS+
Sbjct: 1012 ESDNAAQIPVNIRRLVENAQQLFSIDMRKPSSLHPSRIIEGVKELCKKIIVVQGDDRLSI 1071

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ+NATLFF ILLRST ASK V  EHRLT  AFEW++GEIES+F  +LV+ GEM G V 
Sbjct: 1072 EAQENATLFFQILLRSTLASKCVTLEHRLTETAFEWLMGEIESKFTSALVSAGEMAGVVG 1131

Query: 1078 AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTK 1137
            AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EI+N+AK ++TPSL +FL P      
Sbjct: 1132 AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKDVRTPSLRIFLTPDCAHDA 1191

Query: 1138 ERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISP 1197
            ++AK +Q  LEYTTL  VT  T ++YDPDPM T++EED EFV SYYEMPDED  P   SP
Sbjct: 1192 DKAKFIQSQLEYTTLADVTANTSIYYDPDPMNTVVEEDQEFVASYYEMPDED-TPIARSP 1250

Query: 1198 WLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKG 1257
            WLLRIELN +MM DKKL+M  +A ++  E+  DL+CIF DDNAD+L+LRIRIM+DE  K 
Sbjct: 1251 WLLRIELNPKMMADKKLTMGEIAAQVEAEYGQDLSCIFTDDNADRLVLRIRIMSDEEEKL 1310

Query: 1258 ELNDESA---EDDVFLKKIESNMLTEMALRGV---------------------------- 1286
            + + E+A   EDD FLK++E NMLT+M LRG+                            
Sbjct: 1311 QRSGETAVGQEDDTFLKRVEHNMLTQMKLRGIEGVKKVYIREGPSTHWFDDVGFKMMNEW 1370

Query: 1287 -------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVN 1339
                   NLL VMC+  VD+ RT SN ++EII+VLGIEAVRRALL+E+R VISFDG+YVN
Sbjct: 1371 MLDTDGTNLLDVMCYPQVDSTRTISNDIVEIIQVLGIEAVRRALLNEIRQVISFDGAYVN 1430

Query: 1340 YRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGV 1399
            YRHLA LCD MT+RGHLMAITRHGINR+D+GP++RCSFEETV+IL+DAA+F+E D L GV
Sbjct: 1431 YRHLACLCDVMTFRGHLMAITRHGINRDDSGPLVRCSFEETVEILMDAAMFSEGDPLTGV 1490

Query: 1400 TENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL---QLPSYMEGLEFGMTPARSPVSG--- 1453
            +EN+MLGQLAP+GTG   L L+ + L NAIE    ++   M+GL+      RSP  G   
Sbjct: 1491 SENVMLGQLAPLGTGIMDLVLDAKKLANAIEYEASEIQQVMQGLD---NEWRSPDQGPGT 1547

Query: 1454 ---TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPT---SSPGYSPSSPGYSP 1507
               TP+     +PG  FS +   SP     FSP  G  AFSP    +SPG+  +SP +SP
Sbjct: 1548 PMATPFAS---TPG--FSASSPFSP-GGGSFSPAAG--AFSPMASPASPGFMAASPAHSP 1599

Query: 1508 SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
            +SP  +PTSP YSP SP YSPTSP YSPTSP YSP+SP YSPTSPAYSPTSP+YSPTSP+
Sbjct: 1600 ASP-LNPTSPAYSPMSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA 1658

Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1627
            YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSPAYSPTSPAYSPT
Sbjct: 1659 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT 1718

Query: 1628 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTY 1687
            SP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSPAY   +P YSPTSP+YSPTSP Y
Sbjct: 1719 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY---TPAYSPTSPAYSPTSPAY 1775

Query: 1688 SPTSPSYNPQSAKYSP-SLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
            SPTSP+Y+P S  YSP S AYSP+SP  SP SP       YSPTS  YSPTSPSYSP+S 
Sbjct: 1776 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP------AYSPTSPGYSPTSPSYSPAS- 1828

Query: 1747 TYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
                                 P+Y+P+ GY+PSA GYSP+   +
Sbjct: 1829 ---------------------PEYNPTEGYNPSASGYSPTDADE 1851



 Score =  303 bits (776), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 175/272 (64%), Positives = 207/272 (76%), Gaps = 28/272 (10%)

Query: 1530 SPGYSPTSPTYSP--SSPGYSPTSPAYSPTSPSYSPT----SPSYSPTSPSYSPTSPSYS 1583
            SP   P +P  +P  S+PG+S +SP +SP   S+SP     SP  SP SP +   SP++S
Sbjct: 1540 SPDQGPGTPMATPFASTPGFSASSP-FSPGGGSFSPAAGAFSPMASPASPGFMAASPAHS 1598

Query: 1584 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
            P SP  +PTSP+YSP SP+YSPTSPAYSPTSPAYSPTSPAYSPTSP+YSPTSP+YSPTSP
Sbjct: 1599 PASP-LNPTSPAYSPMSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP 1657

Query: 1644 SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP 1703
            +YSPTSP+YSPTSP+YSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP           
Sbjct: 1658 AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP----------- 1706

Query: 1704 SLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPD 1762
              AYSP+SP  SP SP YSPTSP YSPTS +YSPTSP+YSP+SP YSP+SP       P 
Sbjct: 1707 --AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP----AYTPA 1760

Query: 1763 YSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTP 1793
            YSP+SP YSP++  YSP++P YSP+S + Y+P
Sbjct: 1761 YSPTSPAYSPTSPAYSPTSPAYSPTSPA-YSP 1791


>gi|325183802|emb|CCA18261.1| predicted protein putative [Albugo laibachii Nc14]
          Length = 1819

 Score = 2063 bits (5346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1051/1816 (57%), Positives = 1300/1816 (71%), Gaps = 136/1816 (7%)

Query: 36   IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMA-------ECPGHFGHLELAKP 88
            I   ET   G P  GG+ DPR+GT D + +C+TC    +       +CPGHFGH+ELA+P
Sbjct: 18   ISRPETYLNGHPVIGGIGDPRMGTCDFRARCKTCDCTYSGSGGKVNDCPGHFGHIELARP 77

Query: 89   MFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCE 148
            M+H+GF+K VL I+RSVCF+CSKIL+DE DH+F+ A+KI++ K RLK + + C  K  CE
Sbjct: 78   MYHLGFIKEVLKILRSVCFHCSKILSDERDHRFRSAMKIKDGKRRLKAVFEICNGKKLCE 137

Query: 149  GGDEIDVPG---------QDGEEPLKKNKGGCGAQ----QPKLTIEGMKMIAEYKAQRKK 195
             G E+D+           Q G +   K+K G        QP    +G+K++ E+  Q   
Sbjct: 138  YGAEVDMEKMREDLNLGLQGGLDDKTKSKEGGHGGCGGLQPIYKRQGIKILVEFPEQ--- 194

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
                E +P   +RKQ L A +VL + K ISD DC  LGL+ ++ARPDW+IL ++P+PPP 
Sbjct: 195  ---MEDVPGSGDRKQNLPAAKVLSIFKNISDVDCHSLGLDSRWARPDWLILTLMPVPPPH 251

Query: 256  VRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
            VRPS          DDLTH LA I++ N  L    R G P+HII +F QLLQFH+AT+ +
Sbjct: 252  VRPSVALDGMARGEDDLTHNLASIVKANLALLNCVRKGEPSHIIEQFEQLLQFHLATFIN 311

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            NE PG P+A QRSG+P+K++  RL+ KEGRIRGNLMGKRVDFSARTVIT DP + IDQ+G
Sbjct: 312  NEQPGLPQAQQRSGKPLKTLRQRLRGKEGRIRGNLMGKRVDFSARTVITADPNLEIDQVG 371

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGP--HPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            VP SIA+NLT PE VTP+N+  + +L+  GP  HP     GAKYIIR+DG R+DLRY+K 
Sbjct: 372  VPLSIAMNLTVPERVTPFNMAAMHQLISNGPLEHP-----GAKYIIREDGNRIDLRYIKN 426

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
             SD  L+ G+ VERHL D D VLFNRQPSLHKMSIM HR+K+  +STFRLNLSVTSPYNA
Sbjct: 427  KSDLALKCGWIVERHLRDEDLVLFNRQPSLHKMSIMSHRVKVFHWSTFRLNLSVTSPYNA 486

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS   RAE  ELMMV K I++PQSNRPVMGIVQD+LLG +K TKRD F
Sbjct: 487  DFDGDEMNLHVPQSLTARAEAQELMMVHKVIITPQSNRPVMGIVQDSLLGVQKFTKRDIF 546

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKP--------RPLWTGKQVFNLIIPKQINLFRTA 595
            IEKDV MN+LMW  ++DG++P P IL P        RP+WTGKQ+F+ +IP  IN    +
Sbjct: 547  IEKDVVMNLLMWVFNWDGRIPTPAILVPKKGEIGKYRPIWTGKQMFSQVIP-DINFTGFS 605

Query: 596  AWHADNDK-GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
            + H+  +    L+  D+ V +++GELL+G + KKT+G+S G LIH    E GP+ A+ FL
Sbjct: 606  STHSSKESFAKLSPIDSRVIVQRGELLAGIIDKKTIGSSAGGLIHTTMLEKGPEEAKYFL 665

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
            G  Q LVN WL+  +F++G+ D IAD  T++TI D I++AK  V +L+++ Q   LE +P
Sbjct: 666  GAVQKLVNNWLVGRSFTVGVSDAIADVSTLKTIVDIITQAKVQVHDLVQRGQKGKLETQP 725

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            GRTM+ESFE  VN+VLNTARD+AG  AQ SL E+NN+KA VT+GSKGSFINISQ+ ACVG
Sbjct: 726  GRTMVESFEQLVNKVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFINISQIIACVG 785

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQNVEGKRIP+GF  RTLPH+ KDD GPESRGFVENSYL+GLTPQEFFFHAMGGREGLID
Sbjct: 786  QQNVEGKRIPYGFQHRTLPHYGKDDLGPESRGFVENSYLKGLTPQEFFFHAMGGREGLID 845

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKAME +M +YDGTVRN+ G++IQFLYGEDGMD+VW+E Q  +S 
Sbjct: 846  TAVKTAETGYIQRRLVKAMESVMARYDGTVRNAQGEIIQFLYGEDGMDAVWVEKQRFESH 905

Query: 895  KMKKSEFDKAFRFEMDEENWN-----PNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEAD 947
            ++ K EF++ + F+   E        P+ +    E I D++T +  + +   E+ +L+ D
Sbjct: 906  RLNKVEFEQKYMFDTSSELLGCVPKCPDQLFLDPEIIKDIRTNQHTQHILRDEIAQLQKD 965

Query: 948  RYQLATEIATSG-----DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            R  L   +A+ G     D++  +PVN++RLI NAQ+ F VD ++PS +HP  +++ V +L
Sbjct: 966  RVNLRVILASRGQGQESDNAAQIPVNVRRLIENAQQLFSVDLQQPSSLHPSHIIDGVKEL 1025

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
             +++ VV G DPLS+EAQ+NATLFF ILLRS  ASK V  EHRLT  AFEW++GEIES+F
Sbjct: 1026 CKKIIVVQGNDPLSLEAQENATLFFQILLRSALASKCVTLEHRLTETAFEWLLGEIESKF 1085

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
              SLV+ GEM G VAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL+EI+N+AK ++T
Sbjct: 1086 TSSLVSAGEMAGVVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIMNIAKDVRT 1145

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PSL +FL P      ++AK +Q  LEYTTL  VT  T ++YDPDPM TIIEED EFV +Y
Sbjct: 1146 PSLQIFLTPDCAHDADKAKFIQSQLEYTTLADVTANTAIFYDPDPMNTIIEEDQEFVSTY 1205

Query: 1183 YEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADK 1242
            YEMPDED  P   SPWLLRIELNREMM DKKL+M+ +A +I  E+  DL+CIF DDNADK
Sbjct: 1206 YEMPDED-TPVARSPWLLRIELNREMMADKKLTMSEIASQIESEYGQDLSCIFTDDNADK 1264

Query: 1243 LILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV------------- 1286
            L+LRIRI++DE  K +   ES    EDD FLK++E NMLT+M LRGV             
Sbjct: 1265 LVLRIRIVSDEEEKMQRTGESTVGQEDDTFLKRVEHNMLTQMKLRGVQSVKKVYIREGRP 1324

Query: 1287 ----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                                  NLL V+C   VD  RT SN ++EII+VLGIEAVRRALL
Sbjct: 1325 THWFDDVGFKMTTEWVLDTDGTNLLDVLCFPQVDGTRTISNDIVEIIQVLGIEAVRRALL 1384

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
            +E+R VISFDG+YVNYRHLA L D MT+RGHLMAITRHGINR+D+GP++RCSFEETV+IL
Sbjct: 1385 NEIRQVISFDGAYVNYRHLACLADVMTFRGHLMAITRHGINRDDSGPLVRCSFEETVEIL 1444

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGM 1444
            +DAA+F+E D L GV+EN+MLGQLAP+GTG   L L+ + L +AIE +     + +    
Sbjct: 1445 MDAAMFSEGDPLTGVSENVMLGQLAPLGTGITDLVLDAKKLTDAIEYEASEIQQVMRGIN 1504

Query: 1445 TPARSPVSG------TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSP------ 1492
               RSP  G      TP+     +PG  FS +   SP     FSP  G   FSP      
Sbjct: 1505 DEWRSPEQGPGTPMATPFTS---TPG--FSASSPFSP-GGGSFSPAAG--TFSPMASPAS 1556

Query: 1493 ---TSSPGYSPSSPGYS------PSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPS 1543
                SSPG+S +SP  S      P+SP +SP SP YSPTSP YSPTSP YSPTSP YSP+
Sbjct: 1557 PGFMSSPGFSVASPARSPGVSLDPASPAFSPMSPAYSPTSPAYSPTSPAYSPTSPAYSPT 1616

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1603
            SP YSPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+Y
Sbjct: 1617 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1676

Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
            SPTSPAYSPTSPA+SPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTS
Sbjct: 1677 SPTSPAYSPTSPAHSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTS 1736

Query: 1664 PAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS--LAYSPSSPRLSPASPYS 1721
            PAYSPTSP YSPTSP+YSPTSP YSPTSP+YNP    YSP+       S      +  Y+
Sbjct: 1737 PAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYNPSGTAYSPTSPAYSPTSPSYSPSSPQYN 1796

Query: 1722 PTSPNYSPTSSSYSPT 1737
            PT   Y P SS YSPT
Sbjct: 1797 PTE-GYDPNSSGYSPT 1811



 Score =  108 bits (270), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/177 (43%), Positives = 107/177 (60%), Gaps = 32/177 (18%)

Query: 1621 SPAYSPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1678
            SP   P +P  +P  ++P +S +SP +SP   S+SP + ++SP +   SP SPG+  +SP
Sbjct: 1509 SPEQGPGTPMATPFTSTPGFSASSP-FSPGGGSFSPAAGTFSPMA---SPASPGFM-SSP 1563

Query: 1679 SYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPT 1737
             +S  SP  SP                        L PASP +SP SP YSPTS +YSPT
Sbjct: 1564 GFSVASPARSP---------------------GVSLDPASPAFSPMSPAYSPTSPAYSPT 1602

Query: 1738 SPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTP 1793
            SP+YSP+SP YSP+SP  +   +P YSP+SP YSP++  YSP++P YSP+S + Y+P
Sbjct: 1603 SPAYSPTSPAYSPTSPAYS-PTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA-YSP 1657


>gi|302835796|ref|XP_002949459.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f. nagariensis]
 gi|300265286|gb|EFJ49478.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f. nagariensis]
          Length = 1879

 Score = 2023 bits (5241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1063/1889 (56%), Positives = 1322/1889 (69%), Gaps = 163/1889 (8%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRK 63
            RFPYS A V +V+ VQF +  P EI+  SV ++   ET E+GK K GGLSDPR+GT+DR 
Sbjct: 6    RFPYSSAPVRQVKAVQFSVWDPAEIKAYSVAELVTSETYEKGKAKLGGLSDPRMGTMDRG 65

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
              C T  AN  + PG+FGH+ LA+P++HIGF+KTV+ ++R V ++ S++L D    K+  
Sbjct: 66   GICTTDGANANDSPGYFGHIALARPVYHIGFIKTVIRVLRCVSYHTSRLLVD----KYAY 121

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
             L+I + + RL+  +  C+ K   E                       G  QP   ++G+
Sbjct: 122  GLRISDSEKRLRYFVHLCQGKKVDET---------------------TGNPQPSYRLDGL 160

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
            K++AE+    K   D+EQ  + VERKQ LTA R L +LKRI +EDC+ LG + ++ RPDW
Sbjct: 161  KIMAEFP---KVKGDEEQEQDNVERKQELTAARALEILKRIPNEDCKALGFDCRFTRPDW 217

Query: 244  MILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            MI+Q LP+PPPPV          R  DDLTH+LA I+R N  +++Q+  G P H+I+E  
Sbjct: 218  MIIQNLPVPPPPVRPSVMMDSSSRCEDDLTHKLAEILRTNNAIKKQDSTGTPQHVIAEQI 277

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
              LQ+HI TYFDN  PG PR+ Q+SGRPIKSI  RLK K GRIRGNLMGKRVDFSARTVI
Sbjct: 278  MALQYHITTYFDNSSPGIPRSNQKSGRPIKSISERLKGKSGRIRGNLMGKRVDFSARTVI 337

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            T DP I ID+LGVPWSIALNLT+PETVTP+NIE+L++LV+ GP+PPPG+TGAK+IIR+DG
Sbjct: 338  TGDPNIGIDELGVPWSIALNLTFPETVTPFNIEKLQKLVDNGPNPPPGETGAKHIIREDG 397

Query: 414  QRLDLRYLKKSSDHHLELGYKV--------------------------------ERHLND 441
            +R++L  LK  +D  LE G KV                                ERHL +
Sbjct: 398  RRINLAVLKSGADRRLEPGDKVGGFFCGRSHRRHTYTHSHSHRVFLQRASHLQVERHLTN 457

Query: 442  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 501
            GD VLFNRQPSLHKMS+MGHR++I+PYSTFRLNLSVT+PYNADFDGDEMNMHV Q+ ETR
Sbjct: 458  GDLVLFNRQPSLHKMSMMGHRVRILPYSTFRLNLSVTTPYNADFDGDEMNMHVAQTHETR 517

Query: 502  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 561
            AE+ ELMMVP+ IVSPQ+N+PVMGIVQD+LLG R +TKRD FIEKDVFMN +M  ED+DG
Sbjct: 518  AEMRELMMVPRNIVSPQANKPVMGIVQDSLLGTRLMTKRDIFIEKDVFMNTIMGIEDWDG 577

Query: 562  KVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELL 621
             VP PTILKP+PLWTGKQ+F++ +P  +NL   +AW+ D D   ++  D+ V I  GELL
Sbjct: 578  TVPMPTILKPKPLWTGKQIFSMFVP-DVNLKNKSAWYKDTDVQDMSVDDSQVLIRSGELL 636

Query: 622  SGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 681
            +G LCKKT+G   G L+H+ W E GP AAR F+ + Q  VNYW+LQ+  SIGIGDT+ADA
Sbjct: 637  TGALCKKTVGNGAGGLVHLTWLEHGPHAARGFINNVQRTVNYWVLQHGMSIGIGDTVADA 696

Query: 682  KTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSA 741
            KTM  +N+ I +AK  VK ++++ Q  +LE +PGRT+ ESFE +VNQVLN  RD+AG +A
Sbjct: 697  KTMTKVNEIIEEAKRKVKEVVEKYQQNALEAQPGRTIHESFEAQVNQVLNKCRDDAGKAA 756

Query: 742  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYG 801
              S+  SNN+  MVTAGSKGS INISQM  CVGQQNVEGKRIPFGF +RTLPHF KDD G
Sbjct: 757  YMSVDLSNNIIKMVTAGSKGSNINISQMMGCVGQQNVEGKRIPFGFQNRTLPHFNKDDLG 816

Query: 802  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 861
            PE+RGFV NSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ TGYIQRRLVKAMED++V+Y 
Sbjct: 817  PEARGFVGNSYLRGLTPQEFFFHAMGGREGLIDTAVKTASTGYIQRRLVKAMEDMVVRYG 876

Query: 862  GTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQ 921
            GTVRNS GDV+QFLYGEDGMD+V IESQT + LK    + DK +R +   +   P+++  
Sbjct: 877  GTVRNSQGDVVQFLYGEDGMDAVRIESQTFEHLKWDPVKIDKVYRVDTSRD-LAPDWLSN 935

Query: 922  EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFK 981
            +  + L+T  E       E+ +L+ D   L  E+ T+GD    +P+NL RLIWNAQ  F 
Sbjct: 936  DEYEALRTDPETEQALREEMAQLKEDLRVLREEVLTTGDEKVNIPLNLARLIWNAQTKFG 995

Query: 982  VDPRRP--SDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKR 1039
              P RP  + +   EVV  V  L  RL VV G D LSVEAQ+NAT+ F+ ++R   A KR
Sbjct: 996  CKPHRPGWTGLPVKEVVVKVQDLCRRLVVVVGSDGLSVEAQRNATIMFHSMVRMHLAVKR 1055

Query: 1040 VLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1099
            VL E++L ++AF+W++GEIE+RF  +L  PG+ +G VAAQS+GEP TQMTLNTFH+AGVS
Sbjct: 1056 VLSEYKLNQKAFDWLLGEIETRFFLALSHPGDCVGTVAAQSLGEPTTQMTLNTFHFAGVS 1115

Query: 1100 AKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEAT 1159
            AKNVTLGVPRL E+IN+AK IKTP+L+V L PG+   K+RAK VQ  LEYT  ++V + T
Sbjct: 1116 AKNVTLGVPRLTELINLAKNIKTPTLTVHLLPGLRENKDRAKEVQAKLEYTCFKNVVKTT 1175

Query: 1160 EVWYDP----DPMGTIIEEDVEFVKSYYEMP-DEDIAP-EKISPWLLRIELNREMMVDKK 1213
            E+WYDP    +P  TII ED E + SYY++  +ED+A   ++S WLLR ELNR  M+DK 
Sbjct: 1176 EIWYDPVDPGNPNQTIIGEDEEMLSSYYDLAGEEDLAVLPRLSHWLLRFELNRGTMLDKG 1235

Query: 1214 LSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM-NDEAPKGELNDESAE--DDVFL 1270
            L++ AV + +  E++D +  + NDDNA+KLI+RIR+M  +EA K    DESA+  +D  L
Sbjct: 1236 LTLGAVQKALQDEWEDFINVLVNDDNAEKLIMRIRVMKTEEASK----DESADPTEDTML 1291

Query: 1271 KKIESNM---------LTEMALR-------------------------GVNLLAVMCHED 1296
            K   + M         + ++ +R                         G+NL  V+  E 
Sbjct: 1292 KLSAAIMDVRLHGVPNIRKVFIRAENQHIYDRERGSFRKYEEWILDTEGINLEQVLAFEG 1351

Query: 1297 VDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1356
            VD RRT SN +IE++EVLGIEA R ALL E+R VISFDGSYVNYRHLA L D MT +G L
Sbjct: 1352 VDPRRTMSNSIIEVLEVLGIEAARAALLKEVRNVISFDGSYVNYRHLACLVDIMTCKGCL 1411

Query: 1357 MAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDC 1416
            MAITRHGINRN  GPM +CSFEETVDIL  AA+F E D L GV++NIM+G + P+GTG  
Sbjct: 1412 MAITRHGINRNGNGPMTQCSFEETVDILYRAAMFGERDRLTGVSDNIMMGNMCPLGTGAF 1471

Query: 1417 SLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPV 1476
             L L++  L++A ++Q            TP RSP   TP   G MSP ++ SP       
Sbjct: 1472 DLLLDESALESAFDVQASVCASATPGRYTPGRSP-HRTP---GPMSPSHMLSP------- 1520

Query: 1477 TDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT 1536
                 SP++GG AFSP     +SP     +P SPGYSPTSPGYSPTSP YSPTSP YSPT
Sbjct: 1521 ---MHSPFIGGGAFSPIVGGAFSPVHGSGAPMSPGYSPTSPGYSPTSPAYSPTSPAYSPT 1577

Query: 1537 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1596
            SP YSP+SP YSPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+Y
Sbjct: 1578 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1637

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
            SPTSP+YSPTSPAYSPTSPAYSPTSPAYSPTSP +SPTSP+YSPTSP+YSPTSP+YSPTS
Sbjct: 1638 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPGFSPTSPAYSPTSPTYSPTSPTYSPTS 1697

Query: 1657 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP-SLAYSPSSPRLS 1715
            P+YSPT PAYSPTSP   PT   +SP SP YSPTSP+Y+P S +YSP S  YSP+SP+ S
Sbjct: 1698 PTYSPTGPAYSPTSPSERPTGSRFSPASPNYSPTSPNYSPTSPQYSPTSPQYSPTSPQYS 1757

Query: 1716 PASP-YSPTSPNYSPTSS-----SYSPT---SPSYSPS---SPTYSPS------------ 1751
            P SP YSPTSP YSPT++     +YSPT   SP YSP+   SP+YSP+            
Sbjct: 1758 PTSPQYSPTSPQYSPTAAAKPSPAYSPTADVSPVYSPTADVSPSYSPTADVSPPQGGAGP 1817

Query: 1752 SPYNAGGGNPDYSPSSPQYSPS--AGYSP 1778
            SP   GGG  +YSP+S  YSP   AG SP
Sbjct: 1818 SPLTGGGGQ-EYSPTSAHYSPGVLAGLSP 1845



 Score =  307 bits (787), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 181/277 (65%), Positives = 214/277 (77%), Gaps = 24/277 (8%)

Query: 1523 SPGYSP-TSPGYSPTSPTYSPSSPGYSP--TSPAYSP-TSPSYSPTSPSYSPTSPSYSPT 1578
            +PG SP  +PG  P SP++   SP +SP     A+SP    ++SP   S +P SP YSPT
Sbjct: 1500 TPGRSPHRTPG--PMSPSHM-LSPMHSPFIGGGAFSPIVGGAFSPVHGSGAPMSPGYSPT 1556

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1638
            SP YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSPAYSPTSPAYSPTSP+YSPTSP+Y
Sbjct: 1557 SPGYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1616

Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
            SPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP ++P S
Sbjct: 1617 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPGFSPTS 1676

Query: 1699 AKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAG 1757
                   AYSP+SP  SP SP YSPTSP YSPT  +YSPTSPS  P+   +SP+SP    
Sbjct: 1677 P------AYSPTSPTYSPTSPTYSPTSPTYSPTGPAYSPTSPSERPTGSRFSPASP---- 1726

Query: 1758 GGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTP 1793
                +YSP+SP YSP++  YSP++P YSP+S  QY+P
Sbjct: 1727 ----NYSPTSPNYSPTSPQYSPTSPQYSPTS-PQYSP 1758


>gi|77176709|gb|ABA64469.1| DNA-dependent RNA polymerase II largest subunit [Glaucocystis
            nostochinearum]
          Length = 1852

 Score = 1959 bits (5074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 995/1663 (59%), Positives = 1211/1663 (72%), Gaps = 145/1663 (8%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDR 62
            T+FP+S AE+ KV +VQFGIL PDEIR+MSV +IE+ E  E G+PK GGL DPR+G+IDR
Sbjct: 5    TQFPHSSAELRKVSVVQFGILGPDEIRRMSVAKIEYPECFENGRPKLGGLMDPRMGSIDR 64

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TC  +M+ECPGHFGHLELAKP+ HIGFM T+L I+R VCF+CSK+L D+ D +F+
Sbjct: 65   QFKCQTCAGSMSECPGHFGHLELAKPVLHIGFMTTILKILRCVCFHCSKLLCDKSDIRFR 124

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVP-----GQDGEEPLKKNKGGCGAQQPK 177
             AL+++ P+ RL+ ++D C+ K++CEGGDE+D       G DGE+  K   GGCG   PK
Sbjct: 125  NALRLKKPETRLRAVMDICRGKSQCEGGDELDENAEKEIGPDGEK--KSRHGGCGNFVPK 182

Query: 178  LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
            +  EG+K+ AE+    K  D      E +E++Q L+AE+V  + KRISDEDC+ +GL P+
Sbjct: 183  IIREGLKLTAEFT---KVQD------ETIEKRQVLSAEKVHQIFKRISDEDCRSMGLRPE 233

Query: 238  YARPDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
            +ARPDWMI+ +LP          +     R  DDLTH+LA I++ N NL+RQE NGAPAH
Sbjct: 234  WARPDWMIVTILPVPPPPVRPSIMMDSTARGEDDLTHKLADIVKANMNLKRQEMNGAPAH 293

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            IISEF QLLQFH+ATY DNE+PGQP+A QRSGRP+KSI  RLK KEGRIRGNLMGKRVDF
Sbjct: 294  IISEFQQLLQFHVATYVDNEIPGQPQACQRSGRPLKSISQRLKGKEGRIRGNLMGKRVDF 353

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVIT DP + IDQ+G P SIALNLTYPE VT +N+ R+ EL+  GP+  PG   A+Y
Sbjct: 354  SARTVITADPNLGIDQVGCPRSIALNLTYPEIVTKFNMPRMYELIRNGPNEHPG---ARY 410

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            IIRDDGQRLDLRY+KK+SD HLE GY+VERH+ DGD+VLFNRQPSLHKMSIMGHR+K+MP
Sbjct: 411  IIRDDGQRLDLRYIKKASDLHLEPGYRVERHIQDGDYVLFNRQPSLHKMSIMGHRVKVMP 470

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            YSTFRLNLSVT+PYNADFDGDEMNMHV Q+FETRAEV E+ +VP+ I+SPQSNRPVMGIV
Sbjct: 471  YSTFRLNLSVTTPYNADFDGDEMNMHVAQTFETRAEVQEICLVPRQIISPQSNRPVMGIV 530

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL+  +K+T RDTFIEKDV MNILM  + FDG++P P ILKPRPLWTGKQ+F + +P 
Sbjct: 531  QDTLMASQKMTIRDTFIEKDVVMNILMHLDSFDGRLPIPAILKPRPLWTGKQLFTMFLPN 590

Query: 588  QINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             +NL R  + H DN+   ++ GDT V IE+GELL+G +CK+TLGTS+GSLIHVIW E G 
Sbjct: 591  -VNLIRFCSQHPDNEVSDISPGDTKVIIEQGELLAGIVCKRTLGTSSGSLIHVIWNEHGH 649

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            D AR F   TQ ++N WL+   FSIGIGDTIAD  TMETIN  I  AK  V+ LI   Q 
Sbjct: 650  DIARVFFSMTQKVINNWLINVGFSIGIGDTIADEATMETINQHIGTAKTRVQQLILDCQQ 709

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LE +PGRT++ESFEN+VN+ LNTARD AG+SAQKSL  SNN+KAMVT+GSKGSFINIS
Sbjct: 710  NRLECQPGRTLLESFENRVNKELNTARDNAGASAQKSLKPSNNVKAMVTSGSKGSFINIS 769

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            QM ACVGQQNVEGKRIPFGF DRTLPHF K+DYGPESRGFVENSYLRGLTPQEFFFHAMG
Sbjct: 770  QMIACVGQQNVEGKRIPFGFRDRTLPHFHKNDYGPESRGFVENSYLRGLTPQEFFFHAMG 829

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKTSETGYIQRRL+KAMED+MV+YD T+RNS+GD+IQF+YGEDGMD+V++E
Sbjct: 830  GREGLIDTAVKTSETGYIQRRLIKAMEDVMVQYDSTLRNSIGDIIQFVYGEDGMDAVYVE 889

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
            +Q L+S+KM   EF K ++FE D  N+   +M  + +  ++   + R + +AE ++L  D
Sbjct: 890  NQKLESMKMGDKEFGKVYKFEPDARNFGDGFMDADIVQKIRDSADDRILLEAEFKQLMND 949

Query: 948  RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1007
            R  L   I T  +++WPLPVNLKRLIWNAQK F +D R+PSD+ P+++++ V+ L ++L 
Sbjct: 950  RTALRESIPTD-ENTWPLPVNLKRLIWNAQKIFHIDVRKPSDLDPVDIIKGVNLLTKQLV 1008

Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            V+PGEDPLSVEAQ NAT+ F IL+RS  ASKRVL E+RLT  AFEW++GEIESRFLQ++ 
Sbjct: 1009 VIPGEDPLSVEAQANATMLFQILVRSCLASKRVLTEYRLTSHAFEWLLGEIESRFLQAIA 1068

Query: 1068 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1127
             PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVAKK+KTPSL V
Sbjct: 1069 NPGEMVGAIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAKKVKTPSLVV 1128

Query: 1128 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1187
            +LK       E+AK VQC LE+TTLR VT ATE++YDPD   T+IEED EFV+ YYE+PD
Sbjct: 1129 YLKEYCRRDSEKAKAVQCQLEFTTLRHVTAATEIYYDPDLQNTVIEEDREFVQCYYEIPD 1188

Query: 1188 ---EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
                D A  ++S WLLRIELNREMM DKKL+M  + E+I  +F  DL  I++DDNA KL 
Sbjct: 1189 IPQSDFA--RMSTWLLRIELNREMMTDKKLTMKDIDERIAVDFGGDLHVIYSDDNAAKLS 1246

Query: 1245 LRIRIMN-DEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV----------------- 1286
            L IRI N +E  K +  + S ++  FL++IE +MLTEMALRG+                 
Sbjct: 1247 LHIRIKNQEEEAKNQEEEASGDEHEFLRRIEGDMLTEMALRGIAQIRKVFMREAKKITFD 1306

Query: 1287 ------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELR 1328
                              NLL VM  +DVD  RTTSN ++EII+VLGIEAVR+A L ELR
Sbjct: 1307 ADHKYMHEKEWVLDTEGCNLLEVMSCQDVDHTRTTSNDIVEIIQVLGIEAVRQAALKELR 1366

Query: 1329 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1388
             VISFDGSYVNYRHLA L D MTYRGHLM+ITRHGINR  TG MMRCSFEETV+IL+DAA
Sbjct: 1367 DVISFDGSYVNYRHLATLADVMTYRGHLMSITRHGINRVPTGAMMRCSFEETVEILMDAA 1426

Query: 1389 VFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLK-------NAIELQLPSYMEG-- 1439
            V+AE+D+ R VTENIMLGQL  +GTG   L+LND+            ++ Q     EG  
Sbjct: 1427 VYAETDHCRSVTENIMLGQLCQLGTGSFDLFLNDKAFSTPLNRSTGGVDGQPNLVGEGSP 1486

Query: 1440 ---------LEFGMTPA--RSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVG-- 1486
                      +  MTPA  +SP  GTP+ DG       FSP    SP  D  FSP+ G  
Sbjct: 1487 TIGSPQMTPYDTHMTPALQQSP-GGTPFLDGAT-----FSPYAE-SPFVDGSFSPHRGYS 1539

Query: 1487 -GMAFSPTSSPGYSPSSPG---------------YSPSSPGYSP---------------- 1514
                     SPG+  ++                 YSP+SPGYS                 
Sbjct: 1540 PSSPPYSPRSPGFDYAASPSYSPASPSYSAASPRYSPTSPGYSASSPSYSPTSPSYSPTS 1599

Query: 1515 ------------TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP 1545
                        TSP YSPTSP YSPTSPGYSPTSP+YSP+SP
Sbjct: 1600 PSYSPTSPSYSPTSPAYSPTSPSYSPTSPGYSPTSPSYSPTSP 1642


>gi|357628227|gb|EHJ77617.1| largest subunit of the RNA polymerase II complex [Danaus plexippus]
          Length = 1895

 Score = 1949 bits (5050), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1033/1905 (54%), Positives = 1322/1905 (69%), Gaps = 163/1905 (8%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  I   ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRSSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + ++R VCF CSK+L    + K K+ +
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKVLRCVCFYCSKLLVSPTNPKIKEVV 126

Query: 126  KIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK-KNKGGCGAQQPKLTIEG 182
                  P+ RL  + D CK K  CEGG+++D+ G++GEE  +    GGCG  QP +  +G
Sbjct: 127  MKSKGQPRKRLTYVYDLCKGKNICEGGEDMDI-GKEGEEGKRGTGHGGCGHYQPSIRRQG 185

Query: 183  MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
            + + AE+K     N+D +      ++K  +TAERV  +LK I+DED  +LG++PK+ARPD
Sbjct: 186  LDLTAEWK---HANEDTQ------DKKIIITAERVYEILKHITDEDSFILGMDPKFARPD 236

Query: 243  WMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
            WMI+ VLP+PP  VRP+          DDLTH+LA II+ N  L R E++GA AH++++ 
Sbjct: 237  WMIVTVLPVPPLAVRPAVVMFGSAKNQDDLTHKLADIIKANNELMRNEQSGAAAHVLTDN 296

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
             ++LQFH+AT+ DN++PG P+A Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTV
Sbjct: 297  IRMLQFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 356

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
            ITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD+
Sbjct: 357  ITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPG---AKYIVRDN 413

Query: 413  GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
            G+R+DLR+  K SD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STFR
Sbjct: 414  GERIDLRFHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFR 473

Query: 473  LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
            +NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL 
Sbjct: 474  MNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLT 533

Query: 533  GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
              RK+TKRD F+ K+  MN+LM+   +DGK+PQP ILKP+PLWTGKQ+F LIIP  +N+ 
Sbjct: 534  AVRKMTKRDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGNVNMV 593

Query: 593  RTAAWHADN-DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            RT + H D+ D G+   ++ GDT V +E GELL G LCKK+LG S GSL+H+   E+G +
Sbjct: 594  RTHSTHPDDEDDGVNRWISPGDTKVIVEHGELLMGILCKKSLGASAGSLLHICMLELGHE 653

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
             A +F G+ Q ++N WLL    SIGIGDTIAD +T + I   I KAK++V  +I++A + 
Sbjct: 654  IAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNM 713

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV AGSKGS INISQ
Sbjct: 714  ELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQ 773

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            + ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGG
Sbjct: 774  VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGG 833

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E 
Sbjct: 834  REGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEF 893

Query: 889  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
            Q + ++K+    F+K F+F+   E +      ++ I +L     +    ++E ++L  DR
Sbjct: 894  QNMPTVKLSNKAFEKKFKFDPTNERYLKRIFHEDIIKELTESGYVIADLESEWEQLCKDR 953

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
             ++  +I  SG+S   LP N +R+IWN QK F ++ R  +D+ P++V++ V  L ++  +
Sbjct: 954  -EILRQIFPSGESKVVLPCNFRRMIWNVQKIFHINKRMSTDLSPIKVIQGVKDLLKKCVI 1012

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            V GED LS +A +NATL F  L+RSTF +K V +++RL+ EAFEW+IGEIE+RF Q+ V 
Sbjct: 1013 VAGEDRLSKQANENATLLFQCLVRSTFCTKYVSEDYRLSSEAFEWLIGEIETRFQQAQVN 1072

Query: 1069 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1128
            PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VF
Sbjct: 1073 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1132

Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1188
            L  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD 
Sbjct: 1133 LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDF 1192

Query: 1189 DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
            D  P KISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIR
Sbjct: 1193 D--PTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR 1250

Query: 1249 IMNDEAPKGELNDESA----EDDVFLKKIESNMLTEMALRGV------------------ 1286
            IMN+E  K + NDE      EDD+FL+ IE+NML++M L+G+                  
Sbjct: 1251 IMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKR 1310

Query: 1287 ----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                                  +L+ V+   DVD  RT SN + EI +VLGIEAVR+++ 
Sbjct: 1311 IIITDQGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVE 1370

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
             E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L
Sbjct: 1371 KEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1430

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLE--- 1441
            LDAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K+ +E+       G+    
Sbjct: 1431 LDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKHGMEMGGLGVGMGVAGGM 1490

Query: 1442 -FG-----MTPARSPVS--GTP-YHDGMMSPGYL----------FSPNLR-----LSPVT 1477
             FG     MTP  +P S   TP Y   + SPG +          FSP+       LSP  
Sbjct: 1491 YFGVGTPSMTPLMTPWSNQNTPGYGSSVWSPGQVGSSMTPGGPSFSPSGASDASGLSPAY 1550

Query: 1478 DAQFSPYVG-----GMAFSPTSSPGYSPSSPGYSPSSPGYSP-------TSPGYSPTSPG 1525
             + +SP  G     G   SP +SP  + +SP YSP+SP Y+        +SP YSPT P 
Sbjct: 1551 SSSWSPQPGSPGSPGAPLSPYASP--AGASPSYSPTSPVYAAPSPSVTPSSPVYSPTGPS 1608

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            YS TS  YSPTSP YSP+SP YSP    YSPTSP YSP SP YSPTSPSYSPTSP+YSP 
Sbjct: 1609 YSLTSHNYSPTSPIYSPNSPRYSPR---YSPTSPGYSPPSPRYSPTSPSYSPTSPAYSPN 1665

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1645
            SPSYS  S  YSPTSP+YSP S +YSP+ P YS  S  YSP+S +YSP++  YSPTS +Y
Sbjct: 1666 SPSYSVKSQDYSPTSPNYSPASTSYSPSGPVYSVNSQGYSPSSLNYSPSNLVYSPTSQNY 1725

Query: 1646 SPTSPSYSPTSPSYSPTSPAYS-----------------PTSPGYSPTSPSYSPTSPTYS 1688
            SP+SP+Y+P +P YSPTS +YS                   SP YSPTSPS S  SPTYS
Sbjct: 1726 SPSSPNYTPPAPPYSPTSHSYSLPYSPASPSISPSSPKYSPSPNYSPTSPSVSGGSPTYS 1785

Query: 1689 PTSPSYNPQSAKYSP-SLAYSPSSPRLSPASPYSPTSPNY--------------SPTSSS 1733
            PTS  Y P+S +YSP S AYSPSSP+   ++ YSP+S NY              SP+S+ 
Sbjct: 1786 PTSHQYGPKSPQYSPSSTAYSPSSPQHPGSARYSPSSRNYLSSSPQYSPSSPRYSPSSNK 1845

Query: 1734 YSPTSPSYSPSSPTYSPSSPYNAGGG--------NPDYSPSSPQY 1770
            YSPT+ +Y+P+S  YSPSSP  +           +P+YSP+SP +
Sbjct: 1846 YSPTNITYTPTSSNYSPSSPAYSSSSGPSKYSPTSPNYSPTSPSH 1890



 Score =  189 bits (480), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 146/279 (52%), Positives = 174/279 (62%), Gaps = 34/279 (12%)

Query: 1516 SPGYSP-TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS-YSPTSP 1573
            +P  +P  +P  +  +PGY   S  +SP   G S T     P  PS+SP+  S  S  SP
Sbjct: 1496 TPSMTPLMTPWSNQNTPGYG--SSVWSPGQVGSSMT-----PGGPSFSPSGASDASGLSP 1548

Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT--SPAYSPTSPAYSPTSPAYSPTSPSY 1631
            +YS    S+SP  P  SP SP  +P SP  SP   SP+YSPTSP Y+  SP+ +P+SP Y
Sbjct: 1549 AYSS---SWSP-QPG-SPGSPG-APLSPYASPAGASPSYSPTSPVYAAPSPSVTPSSPVY 1602

Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
            SPT PSYS TS +YSPTSP YSP SP YSP    YSPTSPGYSP SP YSPTSP+YSPTS
Sbjct: 1603 SPTGPSYSLTSHNYSPTSPIYSPNSPRYSPR---YSPTSPGYSPPSPRYSPTSPSYSPTS 1659

Query: 1692 PSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPS 1751
            P+Y+P S  YS              +  YSPTSPNYSP S+SYSP+ P YS +S  YSPS
Sbjct: 1660 PAYSPNSPSYSVK------------SQDYSPTSPNYSPASTSYSPSGPVYSVNSQGYSPS 1707

Query: 1752 SPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTS 1789
            S  N    N  YSP+S  YSPS+  Y+P AP YSP+S S
Sbjct: 1708 S-LNYSPSNLVYSPTSQNYSPSSPNYTPPAPPYSPTSHS 1745



 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/226 (43%), Positives = 122/226 (53%), Gaps = 47/226 (20%)

Query: 1572 SPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA-YSPTSPAYSPTSP 1629
            +PS +P  +P  +  +P Y  +  S      S +P  P++SP+  +  S  SPAYS    
Sbjct: 1496 TPSMTPLMTPWSNQNTPGYGSSVWSPGQVGSSMTPGGPSFSPSGASDASGLSPAYSS--- 1552

Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTY 1687
            S+SP  P  SP SP  +P SP  SP   SPSYSPTSP Y+  SP  +P+SP YSPT P+Y
Sbjct: 1553 SWSP-QPG-SPGSPG-APLSPYASPAGASPSYSPTSPVYAAPSPSVTPSSPVYSPTGPSY 1609

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPT 1747
            S TS +Y             SP+SP       YSP SP YSP    YSPTSP YSP SP 
Sbjct: 1610 SLTSHNY-------------SPTSPI------YSPNSPRYSP---RYSPTSPGYSPPSPR 1647

Query: 1748 YSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
            YSP+SP         YSP+SP       YSP++P YS  S   Y+P
Sbjct: 1648 YSPTSP--------SYSPTSP------AYSPNSPSYSVKS-QDYSP 1678


>gi|444722932|gb|ELW63604.1| DNA-directed RNA polymerase II subunit RPB1 [Tupaia chinensis]
          Length = 1801

 Score = 1932 bits (5006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1028/1804 (56%), Positives = 1280/1804 (70%), Gaps = 156/1804 (8%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYK---------------------------------------- 434
            R+DLR+  K SD HL+ GYK                                        
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKARNRPGSQLREQEAGKRVGTLSRPVHKDPDLLAVLKTAAL 485

Query: 435  -VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
             VERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLNLSVT+PYNADFDGDEMN+H
Sbjct: 486  WVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLH 545

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            +PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   RK TKRD F+E+   MN+L
Sbjct: 546  LPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLL 605

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKG---ILTAG 609
            M+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT + H D+ D G    ++ G
Sbjct: 606  MFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPG 665

Query: 610  DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
            DT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  R F  + Q ++N WLL   
Sbjct: 666  DTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEG 725

Query: 670  FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
             +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  LEP PG T+ ++FEN+VN++
Sbjct: 726  HTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRI 785

Query: 730  LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
            LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ A VGQQNVEGKRIPFGF  
Sbjct: 786  LNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKH 845

Query: 790  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 849
            RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL
Sbjct: 846  RTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRL 905

Query: 850  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM 909
            +K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q L +LK     F+K FRF+ 
Sbjct: 906  IKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDY 965

Query: 910  DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNL 969
              E      + ++ + D+ +   +++  + E +++  DR  L   I  +GDS   LP NL
Sbjct: 966  TNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRV-IFPTGDSKVVLPCNL 1024

Query: 970  KRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNI 1029
             R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V G+DPLS +AQ+NATL FNI
Sbjct: 1025 LRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNI 1084

Query: 1030 LLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1089
             LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PGEM+G +AAQS+GEPATQMT
Sbjct: 1085 HLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMT 1144

Query: 1090 LNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEY 1149
            LNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL        ERAK++ C LE+
Sbjct: 1145 LNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEH 1204

Query: 1150 TTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMM 1209
            TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+A  +ISPWLLR+EL+R+ M
Sbjct: 1205 TTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVA--RISPWLLRVELDRKHM 1262

Query: 1210 VDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDE---SAED 1266
             D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIMN +  K +  +E     +D
Sbjct: 1263 TDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDD 1322

Query: 1267 DVFLKKIESNMLTEMALRG----------------------------------------V 1286
            DVFL+ IESNMLT+M L+G                                        V
Sbjct: 1323 DVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGV 1382

Query: 1287 NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAIL 1346
            +L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL  VISFDGSYVNYRHLA+L
Sbjct: 1383 SLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALL 1442

Query: 1347 CDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLG 1406
            CDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++AA   ESD ++GV+ENIMLG
Sbjct: 1443 CDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLG 1502

Query: 1407 QLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLEFGMTPARSPVSG-----TP 1455
            QLAP GTG   L L+ E  K  +E+   +P        G+ FG  P  SP+ G     TP
Sbjct: 1503 QLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAP--SPMGGISPAMTP 1560

Query: 1456 YHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPS------S 1509
            ++ G  +P Y        SP   +  +P  G   FSP+++   S  SPGYSP+      S
Sbjct: 1561 WNQGA-TPAYG-----AWSPSVGSGMTP--GAAGFSPSAASDASGFSPGYSPAWSPTPGS 1612

Query: 1510 PGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG-YSPTSPAYSPTSPSYSPTSPSY 1568
            PG    S  Y P SPG    SP YSPTSP Y P SPG Y+P SP+YSP+SPSYSPTSP Y
Sbjct: 1613 PGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPSSPSYSPTSPKY 1670

Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1628
            +PTSPSYSP+SP Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP YSPTS
Sbjct: 1671 TPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTS 1730

Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---AYSPTSPGYSPTSPSYSPTSP 1685
            P Y+PTSP YSPTSP+YSPTSP YSPTSP+YSPTSP    YSPTSPGYSPTSP+YS TSP
Sbjct: 1731 PVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSP 1790

Query: 1686 TYSP 1689
              SP
Sbjct: 1791 AISP 1794



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 150/302 (49%), Gaps = 78/302 (25%)

Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT-SPAYSP 1619
            Y    P+  P   +  PT   +          SP+ +P +   +P   A+SP+     +P
Sbjct: 1523 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTP 1582

Query: 1620 TSPAYSPTSPS-YSPTSPSYSPT------SPSYSPTSPSYSPT-----SPSYSPTSPAYS 1667
             +  +SP++ S  S  SP YSP       SP     S  Y P+     SPSYSPTSPAY 
Sbjct: 1583 GAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYE 1642

Query: 1668 PTSPG------------------------------------YSPTSPSYSPTSPTYSPTS 1691
            P SPG                                    Y+PTSP YSPTSP YSPTS
Sbjct: 1643 PRSPGGYTPQSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTS 1702

Query: 1692 PSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPS 1751
            P Y+P S        YSP++P+      YSPTSP YSPTS  Y+PTSP YSP+SPTYSP+
Sbjct: 1703 PKYSPTSP------TYSPTTPK------YSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPT 1750

Query: 1752 SPYNAGGGNPDYSPSSPQYSPS----AGYSPSAPGYSPSS--TSQYTPQTNRDDSTTKDD 1805
            SP         YSP+SP YSP+    + YSP++PGYSP+S   S  +P  + DDS   D+
Sbjct: 1751 SP--------KYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDS---DE 1799

Query: 1806 KN 1807
            +N
Sbjct: 1800 EN 1801


>gi|308808522|ref|XP_003081571.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
 gi|116060036|emb|CAL56095.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
          Length = 1673

 Score = 1932 bits (5006), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 976/1608 (60%), Positives = 1180/1608 (73%), Gaps = 112/1608 (6%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEI--------------------RQMSVVQIEHGETTE 43
            RFP+S AE+ +V  VQFG+LSPDEI                    R+MSV  IE  +T E
Sbjct: 6    RFPHSTAELCRVDAVQFGVLSPDEIKRANAGGGTDGSTVIFPRAQRKMSVCAIESSDTYE 65

Query: 44   RGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR 103
            +G+PK GGLSDPR+GT+DR   CET   +  + PG+FGHLELAKP++H GF+  VL ++R
Sbjct: 66   KGRPKRGGLSDPRMGTMDRGAVCETDGCDSVQTPGYFGHLELAKPVYHHGFINVVLRVLR 125

Query: 104  SVCFNCSKILADED-DHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEE 162
             V ++ S++L  +D D KF Q ++I+NPKNRLKK+ DACK K+ C               
Sbjct: 126  CVGYSSSQLLLHKDEDPKFAQLMRIKNPKNRLKKLTDACKTKSVC--------------- 170

Query: 163  PLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLK 222
            P        G  QP+  +EGMK+ AE+K +     D E LPE  ERK  +TAER L +LK
Sbjct: 171  PY------TGTAQPQYRLEGMKITAEFKHR-----DDELLPEGGERKVVVTAERALQILK 219

Query: 223  RISDEDCQLLGLNPKYARPDWMILQVLPIPP----------PPVRPSDDLTHQLAMIIRH 272
             ISDEDC++LGL+P++ARPDWMILQV+P+PP             R  DDLT +L  I+R 
Sbjct: 220  GISDEDCRVLGLDPEHARPDWMILQVMPVPPPPVRPSVSFDASTRSEDDLTVKLMEIVRT 279

Query: 273  NENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAK 332
            N+NL RQE+NGAP H+I EF +LLQ+HI T+ DN + G PRA  RSGR IKSI  RLK K
Sbjct: 280  NKNLERQEQNGAPQHVILEFTELLQYHIMTFMDNTVAGMPRALTRSGRSIKSISERLKGK 339

Query: 333  EGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELV 392
             GRIRGNLMGKRVDFSARTVITPDP + +D+LGVPWSIALN+TYPETVTPYNIERL+ LV
Sbjct: 340  AGRIRGNLMGKRVDFSARTVITPDPNLMLDELGVPWSIALNMTYPETVTPYNIERLQRLV 399

Query: 393  EYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPS 452
            + GPHPPPG+TGA+YIIR+DGQRLDLR+LKK+S+  LE GYKVERH+ +GD VLFNRQPS
Sbjct: 400  DNGPHPPPGETGARYIIREDGQRLDLRFLKKASEKRLEYGYKVERHMVNGDVVLFNRQPS 459

Query: 453  LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPK 512
            LHKMSIMGHR++IMPYSTFRLNLSVT PYNADFDGDEMNMH+PQS+ET+AEV ELMMVPK
Sbjct: 460  LHKMSIMGHRVRIMPYSTFRLNLSVTPPYNADFDGDEMNMHLPQSYETKAEVKELMMVPK 519

Query: 513  CIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPR 572
             IVSPQ+N+PVM IVQDTLLGCR ITKRDTFI KDVFMNI+MW ED+DGK+P+P ILKP+
Sbjct: 520  MIVSPQANKPVMAIVQDTLLGCRLITKRDTFIPKDVFMNIIMWLEDWDGKIPKPAILKPQ 579

Query: 573  PLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGT 632
            PLWTGKQVF++++PK +NL RT+AW  D D    +  DT VRIE+GELL+GTLCKKT+G+
Sbjct: 580  PLWTGKQVFSMMLPK-VNLLRTSAWARDADDVTFSVDDTGVRIEQGELLTGTLCKKTMGS 638

Query: 633  STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTIS 692
              G LIHV WEE GP AAR  +  TQ LVNYWLL + F++GI DTIAD +TM TIN+TI+
Sbjct: 639  GGGGLIHVTWEEWGPIAARGLISQTQTLVNYWLLHHGFTVGIADTIADDETMFTINNTIT 698

Query: 693  KAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLK 752
            KAK +VK +IKQAQ+  LE +PG TM +SFE KVNQ+LN ARD AG+SAQ SL ++NN+K
Sbjct: 699  KAKADVKEVIKQAQNNELELQPGMTMQQSFEQKVNQILNKARDNAGNSAQNSLKDTNNVK 758

Query: 753  AMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSY 812
             MVTAGSKGSF+NISQM ACVGQQNVEGKRIP+GF  RTLPHF+KDD+GPESRGFVENSY
Sbjct: 759  MMVTAGSKGSFLNISQMIACVGQQNVEGKRIPYGFKGRTLPHFSKDDFGPESRGFVENSY 818

Query: 813  LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 872
            LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED++VKYDGTVRNS+GDVI
Sbjct: 819  LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVVVKYDGTVRNSVGDVI 878

Query: 873  QFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKE 932
            QFLYGEDGMD+  IESQ LD+L++   EF   F+ + D   +N  ++  E   DL    +
Sbjct: 879  QFLYGEDGMDATMIESQVLDTLRLGAKEFAAVFQIDPDVSGFNKGWLSNEQASDLAHSTK 938

Query: 933  LRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPS---- 988
            +R++ DAE ++L+ DR +L  ++  +GD    LPVN+KR+IWNAQK + +   RP     
Sbjct: 939  VREIIDAEWERLQKDRVEL-RKVFPTGDPHVHLPVNMKRIIWNAQKQYGM--YRPGGSEE 995

Query: 989  DMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTR 1048
            ++    V+E+V +L  +L VV G DPLS+EAQ+N TL F   +R+  A+KRVLK+H+LTR
Sbjct: 996  ELSVTHVIESVAELLPKLIVVAGTDPLSIEAQRNGTLLFFAHVRANLAAKRVLKDHKLTR 1055

Query: 1049 EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVP 1108
              F+WVIGE+ESRF  +L  PG+ IG VAAQSIGEPATQMTLNTFH+AGVSAKNVTLGVP
Sbjct: 1056 AGFDWVIGEVESRFKMALAPPGDGIGVVAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVP 1115

Query: 1109 RLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPM 1168
            RL+EIIN+AK+IKTPSL+V LKP   S + +AK+VQ +LEYTTL SV   TEV YDPDP 
Sbjct: 1116 RLKEIINIAKQIKTPSLTVALKPEFASDRTKAKDVQASLEYTTLHSVAAVTEVHYDPDPT 1175

Query: 1169 GTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFD 1228
             T+IEED EFV++YYEMPDED+ P ++SPWLLRIELNREMMVDKKL MA VAE+IN++F 
Sbjct: 1176 DTVIEEDREFVRAYYEMPDEDVDPSRMSPWLLRIELNREMMVDKKLLMADVAERINEDFG 1235

Query: 1229 DDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG--- 1285
             DL+CIFNDDN++KL+LRIRIM  E  K   +D S ED+VFLK+IE+ ML+ +ALRG   
Sbjct: 1236 GDLSCIFNDDNSEKLVLRIRIMKAEGEK--YDDSSIEDEVFLKRIETQMLSNLALRGIPD 1293

Query: 1286 ---------------------------------VNLLAVMCHEDVDARRTTSNHLIEIIE 1312
                                             VNLL VM H DVD  RTTSNHLIE+I+
Sbjct: 1294 IKKVFIREAKSNAVNPRTQLFEKHTEWMLDTEGVNLLEVMAHPDVDFTRTTSNHLIEVIQ 1353

Query: 1313 VLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPM 1372
            +LGIEAVR  LL ELR VI FDGSYVNYRHLAIL + MTYRGHL++ITRHGINR +TG +
Sbjct: 1354 ILGIEAVRNTLLRELRGVIEFDGSYVNYRHLAILVEVMTYRGHLVSITRHGINRAETGAL 1413

Query: 1373 MRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQ 1432
            MRCSFEETVDIL++AA F+E D + G +ENIMLGQ  PIGTG+  L+L+ EML +A+EL 
Sbjct: 1414 MRCSFEETVDILMEAAAFSERDNMTGPSENIMLGQFCPIGTGEFKLHLDQEMLLDAVELD 1473

Query: 1433 L--PSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSP-NLRLSPV-TDAQFSPYV-GG 1487
            L   +   G    MTP R    GTP + G  SP +L SP    +SP  T   FSPY  GG
Sbjct: 1474 LFETARTPGHYGSMTPGR---EGTPGY-GAKSPSFLLSPGGAMMSPFDTSMAFSPYSDGG 1529

Query: 1488 MAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1535
            MA   +      P   G         P   G  P   G  P   G  P
Sbjct: 1530 MARLLSDESSILPDLAGVLSDLSCVLPDESGILPDESGILPDESGILP 1577


>gi|125983594|ref|XP_001355562.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
 gi|54643878|gb|EAL32621.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
          Length = 1889

 Score = 1927 bits (4993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1031/1921 (53%), Positives = 1317/1921 (68%), Gaps = 187/1921 (9%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+ +
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 126  --KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP---LKKNKGGCGAQQPKLTI 180
                  P+ RL  + D CK KT CEGG+++D+  +D ++P    K   GGCG  QP +  
Sbjct: 127  VKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLT-KDNQQPDPNKKPGHGGCGHYQPSIRR 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ + AE+K     N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYAR
Sbjct: 186  TGLDLSAEWK---HPNEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYAR 236

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  LR+ E +GA AH+I 
Sbjct: 237  PDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQ 296

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 297  ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+R
Sbjct: 357  TVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVR 413

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 414  DNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST 473

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 474  FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDT 533

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD FI ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N
Sbjct: 534  LTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVN 593

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D  D G    ++ GDT V +E G+L+ G LCKKTLGTS GSL+H+ + E+G
Sbjct: 594  MIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELG 653

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             + A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A 
Sbjct: 654  HEIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAH 713

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 714  NMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 773

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELV 893

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E Q + ++K+    F+K F+F+   E +       E I ++    E     ++E   L  
Sbjct: 894  EFQNMPTVKLSNKAFEKRFKFDWSNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQ 953

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L  +I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V++ V  L ER 
Sbjct: 954  DRDHL-RQIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERC 1012

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+ 
Sbjct: 1013 VIVTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQ 1072

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
              PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+
Sbjct: 1073 ANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 1132

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMP
Sbjct: 1133 VFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMP 1192

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNADKL+LR
Sbjct: 1193 DFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLR 1250

Query: 1247 IRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------------- 1286
            IRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+                 
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310

Query: 1287 -----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
                                   +++ V+   DVD  RT+SN + EI +VLGIEAVR+++
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370

Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
              E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430

Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYMEG-- 1439
            L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S M G  
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGT 1490

Query: 1440 ---LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
               +  G TP+ +P   TP+ +   +P Y FSP   +S +T        GG +FSP+++ 
Sbjct: 1491 AMFIGGGSTPSMTP-PMTPWVN-CNTPRY-FSPPGHVSAMTP-------GGPSFSPSAAS 1540

Query: 1497 GYSPSSPGYSPSSPGYSPTSPGYSPTS----------------PGYSPTSPGYSPTSPTY 1540
              S  SP +SP+ PG SP+SP  S +                 P Y+ +SPG +  SP Y
Sbjct: 1541 DASGMSPSWSPAHPGSSPSSPAPSMSPYYPASPSVSPSYSPTSPNYTASSPGGA--SPNY 1598

Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
            SPSSP YSPTSP Y+  SP Y+ T+P+++P S  YSP++  YSPTSP YSPTS    P+S
Sbjct: 1599 SPSSPNYSPTSPLYAAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTS--NFPSS 1656

Query: 1601 PSYSPT-SPAYSPTSPAYSPTS----------------------------PAYSPTSPSY 1631
            PS++ + S  YSP + AYSP+S                            P YSPTSPSY
Sbjct: 1657 PSFAGSGSNMYSPGN-AYSPSSTNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSY 1715

Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS-----------------------P 1668
            SPTSP+Y+P +PSYSPTSP+YS  SP YSP SPAYS                       P
Sbjct: 1716 SPTSPNYTPATPSYSPTSPNYS-ASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSP 1774

Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYS 1728
             SP Y+P SP YSP SP YSPTSP Y+P S ++SPS  YSP+       S YS TSP YS
Sbjct: 1775 GSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSATSPRYS 1828

Query: 1729 PTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPGYSPS 1786
            P  S YSP+S  YSP+SPTY+P++         +YSP+SP YSP+A   YSP++P YSPS
Sbjct: 1829 PNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPTSPAYSPS 1880

Query: 1787 S 1787
            S
Sbjct: 1881 S 1881



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 13/101 (12%)

Query: 1707 YSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSS----PYNAGGGNP 1761
            Y+ SSP    ASP YSP+SPNYSPTS  Y+  SP Y+ ++P ++P S    P  +G    
Sbjct: 1586 YTASSP--GGASPNYSPSSPNYSPTSPLYAAASPRYASTTPNFNPQSTGYSPSASG---- 1639

Query: 1762 DYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTT 1802
             YSP+SP YSP++ + PS+P ++ S ++ Y+P      S+T
Sbjct: 1640 -YSPTSPVYSPTSNF-PSSPSFAGSGSNMYSPGNAYSPSST 1678


>gi|188532149|gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron tulipifera]
          Length = 1010

 Score = 1926 bits (4990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 908/1010 (89%), Positives = 953/1010 (94%), Gaps = 10/1010 (0%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPMFHIGF+KTVLSIMR VCFNCSKIL DE++HKFKQA KIRNPK+RL+K+LDAC
Sbjct: 1    HLELAKPMFHIGFLKTVLSIMRCVCFNCSKILVDEEEHKFKQAQKIRNPKHRLRKVLDAC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            KNKT+CEGGD+I+V  QD EEP+KK +GGCGAQQPKLT+EGMKMIAEYKA RKKNDDQEQ
Sbjct: 61   KNKTRCEGGDDIEVRDQDLEEPVKKRRGGCGAQQPKLTVEGMKMIAEYKATRKKNDDQEQ 120

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP----------I 251
            LPEPVERKQ L+AERVL VLKRISDEDC LLGLNPKYARPDWMILQVLP          +
Sbjct: 121  LPEPVERKQQLSAERVLSVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVM 180

Query: 252  PPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 311
                 R  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ
Sbjct: 181  MDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 240

Query: 312  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 371
            PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPWSIA
Sbjct: 241  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIA 300

Query: 372  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL 431
            LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLEL
Sbjct: 301  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL 360

Query: 432  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 491
            GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN
Sbjct: 361  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 420

Query: 492  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 551
            MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN
Sbjct: 421  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 480

Query: 552  ILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDT 611
            ILMWWEDFDGK+P P +LKPRPLWTGKQVFNLIIPKQINL RT+AWH++ + G +T GDT
Sbjct: 481  ILMWWEDFDGKIPAPAVLKPRPLWTGKQVFNLIIPKQINLIRTSAWHSEAETGFITPGDT 540

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
             VRIE+GELL+GTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FS
Sbjct: 541  QVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFS 600

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDTIADA TME IN+TISKAKN VK LIK AQDK LE EPGRTMMESFEN+VNQVLN
Sbjct: 601  IGIGDTIADAATMEKINETISKAKNEVKELIKAAQDKQLEAEPGRTMMESFENRVNQVLN 660

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRT
Sbjct: 661  KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRT 720

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK
Sbjct: 721  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 780

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK EFD  FR+E D 
Sbjct: 781  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDN 840

Query: 912  ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
             NWNP+YML E+++DLKTI+E R+VFDAEVQKLEADRYQL TEIAT+GD+SWP+PVNLKR
Sbjct: 841  ANWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKR 900

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            LIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVPG+D LS+EAQKNATLFFNILL
Sbjct: 901  LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILL 960

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            RSTFASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 961  RSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1010


>gi|33326213|gb|AAQ08516.1| RNA polymerase II largest subunit [Magnolia x soulangeana]
          Length = 1010

 Score = 1926 bits (4990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 909/1010 (90%), Positives = 954/1010 (94%), Gaps = 10/1010 (0%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPMFHIGF+KTVLSIMR VCFNCSKIL DE+DHKFKQ+ KIRNPK+RL+K+LDAC
Sbjct: 1    HLELAKPMFHIGFLKTVLSIMRCVCFNCSKILVDEEDHKFKQSQKIRNPKHRLRKVLDAC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            KNKTKC+GGD+I+V  QD EEP+KK +GGCGAQQPKLT+EGMKMIAEYKA RKKNDDQEQ
Sbjct: 61   KNKTKCDGGDDIEVRDQDLEEPVKKRRGGCGAQQPKLTVEGMKMIAEYKATRKKNDDQEQ 120

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP----------I 251
            LPEPVERKQ L+AERVL VLKRISDEDC LLGLNPKYARPDWMILQVLP          +
Sbjct: 121  LPEPVERKQQLSAERVLSVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSVM 180

Query: 252  PPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 311
                 R  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ
Sbjct: 181  MDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 240

Query: 312  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 371
            PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPWSIA
Sbjct: 241  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIA 300

Query: 372  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL 431
            LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLEL
Sbjct: 301  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL 360

Query: 432  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 491
            GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN
Sbjct: 361  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 420

Query: 492  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 551
            MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN
Sbjct: 421  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 480

Query: 552  ILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDT 611
            ILMWWEDFDGK+P PTILKPRPLWTGKQVFNLIIPKQINL RT+AWH++ + G +T GDT
Sbjct: 481  ILMWWEDFDGKIPAPTILKPRPLWTGKQVFNLIIPKQINLIRTSAWHSEAETGFITPGDT 540

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
             VRIE+GELL+GTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FS
Sbjct: 541  QVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFS 600

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDTIADA TME IN+TISKAKN VK LIK AQ+K LE EPGRTMMESFEN+VNQVLN
Sbjct: 601  IGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLN 660

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRT
Sbjct: 661  KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRT 720

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK
Sbjct: 721  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 780

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK EFD  FR+E D 
Sbjct: 781  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDN 840

Query: 912  ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
             NWNP+YML E+++DLKTI+E R+VFDAEVQKLEADRYQL TEIAT+GD+SWP+PVNLKR
Sbjct: 841  ANWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKR 900

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            LIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVPG+D LS+EAQKNATLFFNILL
Sbjct: 901  LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILL 960

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            RSTFASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 961  RSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1010


>gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II complex [Drosophila guanche]
 gi|40217263|emb|CAD68001.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217265|emb|CAD70679.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217267|emb|CAD70680.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217269|emb|CAD70681.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217271|emb|CAD70682.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217273|emb|CAD70683.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217275|emb|CAD70684.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217277|emb|CAD70685.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217279|emb|CAD70686.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217281|emb|CAD70687.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217283|emb|CAD70688.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217285|emb|CAD70689.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217287|emb|CAD70690.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217289|emb|CAD70691.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217291|emb|CAD70692.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217293|emb|CAD70693.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217295|emb|CAD70694.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217297|emb|CAD70695.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217299|emb|CAD70696.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217301|emb|CAD70697.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217303|emb|CAD70698.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217305|emb|CAD70699.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217307|emb|CAD70700.1| RNA polymerase II large subunit [Drosophila guanche]
 gi|40217309|emb|CAD70701.1| RNA polymerase II large subunit [Drosophila guanche]
          Length = 1889

 Score = 1925 bits (4987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1036/1928 (53%), Positives = 1326/1928 (68%), Gaps = 201/1928 (10%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+ +
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 126  --KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP---LKKNKGGCGAQQPKLTI 180
                  P+ RL  + D CK KT CEGG+++D+  +D ++P    K   GGCG  QP +  
Sbjct: 127  VKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLT-KDNQQPDPNKKPGHGGCGHYQPSIRR 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ + AE+K     N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYAR
Sbjct: 186  TGLDLSAEWK---HPNEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYAR 236

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  LR+ E +GA AH+I 
Sbjct: 237  PDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQ 296

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 297  ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+R
Sbjct: 357  TVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVR 413

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 414  DNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST 473

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 474  FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDT 533

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD FI ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N
Sbjct: 534  LTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVN 593

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D  D G    ++ GDT V +E G+L+ G LCKKTLGTS GSL+H+ + E+G
Sbjct: 594  MIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELG 653

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             + A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A 
Sbjct: 654  HEIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAH 713

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 714  NMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 773

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELV 893

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            E Q + ++K+    F+K F+F+     W N  YM + + D++  IKE+ D  +A +Q LE
Sbjct: 894  EFQNMPTVKLSNKAFEKRFKFD-----WSNERYMRKVFTDEV--IKEMTDSSEA-IQDLE 945

Query: 946  ADRYQLATE------IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
            ++   L  +      I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V++ V
Sbjct: 946  SEWDHLMHDRDNLRVIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005

Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
              L ER  +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE
Sbjct: 1006 KTLLERCVIVTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIE 1065

Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
            +RF Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK
Sbjct: 1066 TRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKK 1125

Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
             K PSL+VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV
Sbjct: 1126 PKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFV 1185

Query: 1180 KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
              YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDN
Sbjct: 1186 NVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDN 1243

Query: 1240 ADKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV---------- 1286
            ADKL+LRIRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+          
Sbjct: 1244 ADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHL 1303

Query: 1287 ------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGI 1316
                                          +++ V+   DVD  RT+SN + EI +VLGI
Sbjct: 1304 PQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGI 1363

Query: 1317 EAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCS 1376
            EAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCS
Sbjct: 1364 EAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1423

Query: 1377 FEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLP 1434
            FEETVD+L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L 
Sbjct: 1424 FEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLG 1483

Query: 1435 SYMEG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMA 1489
            S M G     +  G TP+ +P   TP+ +   +P Y FSP   +S +T        GG +
Sbjct: 1484 SSMLGGTAMFIGGGSTPSMTP-PMTPWVN-CNTPRY-FSPPGHVSAMTP-------GGPS 1533

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS----------------PGYSPTSPGY 1533
            FSP+++   S  SP +SP+ PG SP+SP  S +                 P Y+ +SPG 
Sbjct: 1534 FSPSAASDASGMSPSWSPAHPGSSPSSPAPSMSPYYPASPSVSPSYSPTSPNYTASSPGG 1593

Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
            +  SP YSPSSP YSPTSP Y+  SP Y+ T+P+++P S  YSP++  YSPTSP YSPTS
Sbjct: 1594 A--SPNYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTS 1651

Query: 1594 PSYSPTSPSYSPT-SPAYSPTSPAYSPTS----------------------------PAY 1624
                P+SPS++ + S  YSP + AYSP+S                            P Y
Sbjct: 1652 --NFPSSPSFAGSGSNMYSPGN-AYSPSSTNYSPNSPSYSPTSPSYSPSSPSYSPTSPCY 1708

Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS----------------- 1667
            SPTSPSYSPTSP+Y+P +PSYSPTSP+YS  SP YSP SPAYS                 
Sbjct: 1709 SPTSPSYSPTSPNYTPATPSYSPTSPNYS-ASPHYSPASPAYSQTGAKYSPTSPTYSPPS 1767

Query: 1668 ------PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS 1721
                  P SP Y+P SP YSP SP YSPTSP Y+P S ++SPS  YSP+       S YS
Sbjct: 1768 PSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYS 1821

Query: 1722 PTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPS 1779
             TSP YSP  S YSP+S  YSP+SPTY+P++         +YSP+SP YSP+A   YSP+
Sbjct: 1822 ATSPRYSPNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPT 1873

Query: 1780 APGYSPSS 1787
            +P YSPSS
Sbjct: 1874 SPAYSPSS 1881



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/160 (40%), Positives = 84/160 (52%), Gaps = 49/160 (30%)

Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTS 1724
            Y+ +SPG +  SP+YSP+SP YSPTSP              Y+  SPR +  +P ++P S
Sbjct: 1586 YTASSPGGA--SPNYSPSSPNYSPTSP-------------LYAAPSPRYASTTPNFNPQS 1630

Query: 1725 PNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA---------- 1774
              YSP++S YSPTSP YSP+S    PSSP  AG G+  YSP +  YSPS+          
Sbjct: 1631 TGYSPSASGYSPTSPVYSPTS--NFPSSPSFAGSGSNMYSPGN-AYSPSSTNYSPNSPSY 1687

Query: 1775 -------------------GYSPSAPGYSPSSTSQYTPQT 1795
                                YSP++P YSP+S + YTP T
Sbjct: 1688 SPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPN-YTPAT 1726



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 13/101 (12%)

Query: 1707 YSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSS----PYNAGGGNP 1761
            Y+ SSP    ASP YSP+SPNYSPTS  Y+  SP Y+ ++P ++P S    P  +G    
Sbjct: 1586 YTASSP--GGASPNYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGYSPSASG---- 1639

Query: 1762 DYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTT 1802
             YSP+SP YSP++ + PS+P ++ S ++ Y+P      S+T
Sbjct: 1640 -YSPTSPVYSPTSNF-PSSPSFAGSGSNMYSPGNAYSPSST 1678


>gi|403182441|gb|EJY57389.1| AAEL017363-PA [Aedes aegypti]
          Length = 1887

 Score = 1922 bits (4978), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1018/1917 (53%), Positives = 1283/1917 (66%), Gaps = 237/1917 (12%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I++ ET E G+PK  GL DPR G I+R  +
Sbjct: 5    SKAPLRTVKKVQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIERTSR 64

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  
Sbjct: 65   CQTCAGNMTECPGHFGHIDLAKPVFHIGFVTKTIKILRCVCFYCSKMLVAPSNPKIKEIV 124

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP---LKKNKGGCGAQQPKLTI 180
            +K +  P+ RL  + D CK K  CEGG+++D+  +DG  P    K+  GGCG  QP L  
Sbjct: 125  MKSKGQPRKRLAYVYDLCKGKKICEGGEDMDIT-KDGAAPDPNKKQGHGGCGHYQPSLRR 183

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ +IAE+K     N+D +      E+K  +TAERV  +LK I+DE+C +LG++PK+AR
Sbjct: 184  TGLDVIAEWK---HVNEDSQ------EKKIAVTAERVWEILKHITDEECYVLGMDPKFAR 234

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  L++ E  GA AH+I+
Sbjct: 235  PDWMIITVLPVPPLAVRPAVVMFGATKNQDDLTHKLSDIIKANNELKKNEATGAAAHVIA 294

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG P+A Q+SG+P+KS+ SRLK KEGRIRGNLMGKRVDFSAR
Sbjct: 295  ENIKMLQFHVATLVDNDMPGMPKAMQKSGKPLKSVKSRLKGKEGRIRGNLMGKRVDFSAR 354

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP S+A N+T+PE VTP+NI+R++ELV  G    PG   AKYI+R
Sbjct: 355  TVITPDPNLRIDQVGVPRSVAQNMTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVR 411

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 412  DNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST 471

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+HVPQS ETRAE+  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 472  FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHITPRQIITPQANKPVMGIVQDT 531

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD F+EK+  MN+LM+   +DGK+PQP ILKP+PLWTGKQ+F LIIP  +N
Sbjct: 532  LTAVRKMTKRDVFLEKEQMMNLLMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVN 591

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+++ E+G
Sbjct: 592  MIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHIVFLELG 651

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             + A +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A 
Sbjct: 652  HEIAGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYAEIQRAIRKAKEDVIGVIQKAH 711

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 712  NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 771

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 772  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAM 831

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 832  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETV 891

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E Q L ++K+    F+K +RF+   E        ++ I +L    ++    +AE ++L  
Sbjct: 892  EFQNLPTIKLSNKVFEKRYRFDPTNERNLRRVFNEDVIKELTESPDVIQEIEAEYEQLLR 951

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L  +I  +GDS   LP NL+R+IWN QK F ++ R  +D+ P++V+  V  L  + 
Sbjct: 952  DREAL-RQIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRGTTDLSPLKVIHGVRDLLTKC 1010

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +V G D LS +A +NATL F  L+RST  +K V +E RL  EAFEW+IGEIE+RF Q+ 
Sbjct: 1011 VIVAGTDRLSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQ 1070

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
              PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+
Sbjct: 1071 CNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLT 1130

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMP
Sbjct: 1131 VFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMP 1190

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNADKL+LR
Sbjct: 1191 DFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLR 1248

Query: 1247 IRIMNDEAPKGELNDE----SAEDDVFLKKIESNMLTEMALRGVN--------------- 1287
            IRIMN +  K + N+E      EDD+FL+ IE+NML++M L+G+                
Sbjct: 1249 IRIMNGDDSKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAK 1308

Query: 1288 -------------------------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                     ++ V+   DVD  RT SN + EI +VLGIEAVR++
Sbjct: 1309 RRIVITPEGEFKAIGEWLLETDGTAMMKVLSERDVDPVRTASNDICEIFQVLGIEAVRKS 1368

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            +  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD
Sbjct: 1369 VEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1428

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM--EGL 1440
            +L DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  +E+   S M   G+
Sbjct: 1429 VLNDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKLGMEIPHTSIMGGSGM 1488

Query: 1441 EF--GMTPARSPVSGTPYHDGMMSPGYL-FSPNLRLSPVTDAQFSPYVGGMAFSPTSSPG 1497
             F  G TP+ SP   TP+     +PGY  +SP+   S +T        GG +FSP++   
Sbjct: 1489 FFGPGATPSMSPAM-TPWQQS-QTPGYCDWSPSGPPSGMTP-------GGPSFSPSAQSD 1539

Query: 1498 YSPSSP-----------------------------------GYSPSSPGYSPTSPGYSPT 1522
             S  SP                                    Y+ +SPG +  SP YSPT
Sbjct: 1540 VSGMSPLWSPMPGSPSSPGPSMSPYFPSSPSASPSYSPSSPNYAAASPGGA--SPAYSPT 1597

Query: 1523 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1582
            SP YSPTSP YSPTSP YSP+SP YSPTSP YSPTSPSYSPTSP YSP+ P Y P+SP+Y
Sbjct: 1598 SPSYSPTSPTYSPTSPRYSPTSPNYSPTSPQYSPTSPSYSPTSPHYSPSQP-YGPSSPAY 1656

Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPA--------------------------------- 1609
            SPTSPSYSPTSP YSPTSPSYSPTSPA                                 
Sbjct: 1657 SPTSPSYSPTSP-YSPTSPSYSPTSPAYSPTSPSYSPSSNSYSPTSPSYSPTSPSYSPTS 1715

Query: 1610 --YSPTSPAYSPTSPAYSPT----------------------------------SPSYSP 1633
              Y+P +P+YSPTSP YSP+                                  SP Y+P
Sbjct: 1716 PNYTPATPSYSPTSPNYSPSSPHYSPTSPSYSPSSPKYSPTSPSYSPTSPSYGGSPQYTP 1775

Query: 1634 TSPSYSPTSPSYSP----------------------TSPSYSPTSPSYSPTSPAYSPTSP 1671
             SP YSPTSP YSP                      +SP+YSP S +YSP   +YSP S 
Sbjct: 1776 ASPQYSPTSPKYSPTSPSYSPSSPQHSPGGSNNFMSSSPTYSP-SATYSPNMSSYSPGSQ 1834

Query: 1672 GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNY 1727
             YSPTSP Y+PTSP YSP+SP+++P    YSPS          SPASP YSPTSP+Y
Sbjct: 1835 KYSPTSPVYTPTSPNYSPSSPAFSPTGQGYSPS----------SPASPTYSPTSPSY 1881



 Score =  149 bits (376), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/267 (46%), Positives = 152/267 (56%), Gaps = 59/267 (22%)

Query: 1545 PGYSPT-SPAYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSP 1601
            PG +P+ SPA +P   S +P    +SP+ P    +P  PS+SP++ S        S  SP
Sbjct: 1492 PGATPSMSPAMTPWQQSQTPGYCDWSPSGPPSGMTPGGPSFSPSAQS------DVSGMSP 1545

Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
             +SP   + S   P+ SP  P+    SPSYSP+SP+Y+  SP  +  SP+YSPTSPSYSP
Sbjct: 1546 LWSPMPGSPSSPGPSMSPYFPSSPSASPSYSPSSPNYAAASPGGA--SPAYSPTSPSYSP 1603

Query: 1662 TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS 1721
            TSP YSPTSP YSPTSP+YSPTSP YSPTSPSY             SP+SP  SP+ PY 
Sbjct: 1604 TSPTYSPTSPRYSPTSPNYSPTSPQYSPTSPSY-------------SPTSPHYSPSQPYG 1650

Query: 1722 PTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP---------------------------- 1753
            P+SP YSPTS SYSPTSP YSP+SP+YSP+SP                            
Sbjct: 1651 PSSPAYSPTSPSYSPTSP-YSPTSPSYSPTSPAYSPTSPSYSPSSNSYSPTSPSYSPTSP 1709

Query: 1754 ------YNAGGGNPDYSPSSPQYSPSA 1774
                   N     P YSP+SP YSPS+
Sbjct: 1710 SYSPTSPNYTPATPSYSPTSPNYSPSS 1736



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 135/346 (39%), Positives = 173/346 (50%), Gaps = 109/346 (31%)

Query: 1559 PSYSPT-SPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPS-YSPTSPAYSPTS 1614
            P  +P+ SP+ +P   S +P    +SP+ P    +P  PS+SP++ S  S  SP +SP  
Sbjct: 1492 PGATPSMSPAMTPWQQSQTPGYCDWSPSGPPSGMTPGGPSFSPSAQSDVSGMSPLWSPMP 1551

Query: 1615 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 1674
             + S   P+ SP  PS    SPSYSP+SP+Y+  SP  +  SP+YSPTSP+YSPTSP YS
Sbjct: 1552 GSPSSPGPSMSPYFPSSPSASPSYSPSSPNYAAASPGGA--SPAYSPTSPSYSPTSPTYS 1609

Query: 1675 PTSPSYSPTSPTYSPTSPSYNPQSAKYSP--------------SLAYSPSSPRLSPASPY 1720
            PTSP YSPTSP YSPTSP Y+P S  YSP              S AYSP+SP  SP SPY
Sbjct: 1610 PTSPRYSPTSPNYSPTSPQYSPTSPSYSPTSPHYSPSQPYGPSSPAYSPTSPSYSPTSPY 1669

Query: 1721 SPTSPNYSPTS-----------------------------------SSYSPTSPSYSPSS 1745
            SPTSP+YSPTS                                    +Y+P +PSYSP+S
Sbjct: 1670 SPTSPSYSPTSPAYSPTSPSYSPSSNSYSPTSPSYSPTSPSYSPTSPNYTPATPSYSPTS 1729

Query: 1746 PTYSPSSPY--------------------------NAGGGNPDYSPSSPQYSP------- 1772
            P YSPSSP+                           + GG+P Y+P+SPQYSP       
Sbjct: 1730 PNYSPSSPHYSPTSPSYSPSSPKYSPTSPSYSPTSPSYGGSPQYTPASPQYSPTSPKYSP 1789

Query: 1773 ----------------SAGYSPSAPGYSPSST-----SQYTPQTNR 1797
                            S  +  S+P YSPS+T     S Y+P + +
Sbjct: 1790 TSPSYSPSSPQHSPGGSNNFMSSSPTYSPSATYSPNMSSYSPGSQK 1835


>gi|188532159|gb|ACD63091.1| RNA polymerase II largest subunit [Saruma henryi]
          Length = 1009

 Score = 1916 bits (4964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 900/1010 (89%), Positives = 955/1010 (94%), Gaps = 11/1010 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPMFHIGF+KTVLSIMR VCFNCSKILADEDDH+FKQ+LK+RNPK+RL+K+LDAC
Sbjct: 1    HLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEDDHRFKQSLKVRNPKHRLRKVLDAC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            KNK KCEGGDEIDV GQ+ +EP+KK +GGCGAQQPKLT+EGMKMIAEYKA +KKNDDQEQ
Sbjct: 61   KNKQKCEGGDEIDVQGQESDEPVKKKRGGCGAQQPKLTVEGMKMIAEYKA-KKKNDDQEQ 119

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP----------I 251
            LPEPVERKQ LTAE+VL VLKRISDEDC LLGL+PKYARPDWMILQVLP          +
Sbjct: 120  LPEPVERKQQLTAEKVLSVLKRISDEDCILLGLSPKYARPDWMILQVLPIPPPPVRPSVM 179

Query: 252  PPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 311
                 R  DDLTHQLAMIIRHNENLRRQE+NGAPAHIISEFAQLLQFHIATYFDNELPGQ
Sbjct: 180  MDTSSRSEDDLTHQLAMIIRHNENLRRQEKNGAPAHIISEFAQLLQFHIATYFDNELPGQ 239

Query: 312  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 371
            PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPWSIA
Sbjct: 240  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIA 299

Query: 372  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL 431
            LNLTYPETVTPYNI+RLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLEL
Sbjct: 300  LNLTYPETVTPYNIDRLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL 359

Query: 432  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 491
            GYKVERHLNDGD+VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN
Sbjct: 360  GYKVERHLNDGDYVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 419

Query: 492  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 551
            MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN
Sbjct: 420  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 479

Query: 552  ILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDT 611
            ILMWWEDFDGK+P P +LKPRPLWTGKQVFNLIIPKQINL RT+AWHA+++ G +T GDT
Sbjct: 480  ILMWWEDFDGKIPAPAVLKPRPLWTGKQVFNLIIPKQINLLRTSAWHAESETGFITPGDT 539

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
             VRIE+GELL+GTLCKK LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS
Sbjct: 540  QVRIERGELLAGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 599

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDTIADA TME INDTI+KAKN VK LIK A +K LE EPGRTMMESFEN+VNQVLN
Sbjct: 600  IGIGDTIADAATMEKINDTITKAKNEVKELIKAAHEKQLEAEPGRTMMESFENRVNQVLN 659

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF++RT
Sbjct: 660  KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFINRT 719

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHFT+DD GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK
Sbjct: 720  LPHFTQDDNGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 779

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK+EFDK FR+E D+
Sbjct: 780  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKAEFDKVFRYEFDD 839

Query: 912  ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
             NWNP+YML E+++DLKTI+E R VFDAEVQKLEADRYQL TEI T+GD+SWP+PVNLKR
Sbjct: 840  ANWNPSYMLPEHVEDLKTIREFRSVFDAEVQKLEADRYQLGTEITTTGDNSWPMPVNLKR 899

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            LIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVPGED +S+EAQKNATLFFNILL
Sbjct: 900  LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGEDLMSMEAQKNATLFFNILL 959

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            RSTF+SKRVLKE+RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 960  RSTFSSKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1009


>gi|195168657|ref|XP_002025147.1| GL26742 [Drosophila persimilis]
 gi|194108592|gb|EDW30635.1| GL26742 [Drosophila persimilis]
          Length = 1804

 Score = 1916 bits (4964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1000/1868 (53%), Positives = 1276/1868 (68%), Gaps = 199/1868 (10%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+ +
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 126  --KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP---LKKNKGGCGAQQPKLTI 180
                  P+ RL  + D CK KT CEGG+++D+  +D ++P    K   GGCG  QP +  
Sbjct: 127  VKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLT-KDNQQPDPNKKPGHGGCGHYQPSIRR 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ + AE+K     N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYAR
Sbjct: 186  TGLDLSAEWK---HPNEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYAR 236

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  LR+ E +GA AH+I 
Sbjct: 237  PDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQ 296

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 297  ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+R
Sbjct: 357  TVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVR 413

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 414  DNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST 473

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 474  FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDT 533

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD FI ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N
Sbjct: 534  LTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVN 593

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D  D G    ++ GDT V +E G+L+ G LCKKTLGTS GSL+H+ + E+G
Sbjct: 594  MIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELG 653

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             + A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A 
Sbjct: 654  HEIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAH 713

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 714  NMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 773

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELV 893

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E Q + ++K+    F+K F+F+   E +       E I ++    E     ++E   L  
Sbjct: 894  EFQNMPTVKLSNKAFEKRFKFDWSNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQ 953

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L  +I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V++ V  L ER 
Sbjct: 954  DRDHL-RQIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERC 1012

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+ 
Sbjct: 1013 VIVTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQ 1072

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
              PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+
Sbjct: 1073 ANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 1132

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMP
Sbjct: 1133 VFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMP 1192

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNADKL+LR
Sbjct: 1193 DFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLR 1250

Query: 1247 IRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------------- 1286
            IRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+                 
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310

Query: 1287 -----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
                                   +++ V+   DVD  RT+SN + EI +VLGIEAVR+++
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370

Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
              E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430

Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFG 1443
            L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+  P+        
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEI--PN-------- 1480

Query: 1444 MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSP 1503
             T   S + GT                           + ++GG         G +PS  
Sbjct: 1481 -TLGSSMLGGT---------------------------AMFIGG---------GSTPSM- 1502

Query: 1504 GYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSP 1563
                 +P  +P SP YSPTSP Y+ +SPG +  SP YSPSSP YSPTSP Y+  SP Y+ 
Sbjct: 1503 -----TPPMTPVSPSYSPTSPNYTASSPGGA--SPNYSPSSPNYSPTSPLYAAASPRYAS 1555

Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPAYSPTSPAYSPTS- 1621
            T+P+++P S  YSP++  YSPTSP YSPTS    P+SPS++ + S  YSP + AYSP+S 
Sbjct: 1556 TTPNFNPQSTGYSPSASGYSPTSPVYSPTS--NFPSSPSFAGSGSNMYSPGN-AYSPSST 1612

Query: 1622 ---------------------------PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1654
                                       P YSPTSPSYSPTSP+Y+P +PSYSPTSP+YS 
Sbjct: 1613 NYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYSPTSPNYS- 1671

Query: 1655 TSPSYSPTSPAYS-----------------------PTSPGYSPTSPSYSPTSPTYSPTS 1691
             SP YSP SPAYS                       P SP Y+P SP YSP SP YSPTS
Sbjct: 1672 ASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTS 1731

Query: 1692 PSYNPQSA------KYSPSLA-YSPSSPRLSP-ASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            P Y+P S       +YSP+ + YS +SPR SP  S YSP+S  YSPTS +Y+PT+ +YSP
Sbjct: 1732 PLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTARNYSP 1791

Query: 1744 SSPTYSPS 1751
            +S  YSP+
Sbjct: 1792 TSLMYSPT 1799



 Score =  202 bits (514), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 137/310 (44%), Positives = 171/310 (55%), Gaps = 85/310 (27%)

Query: 1544 SPGYSPTSPAYSPTSPSYSPT-----SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1598
            +P  +P SP+YSPTSP+Y+ +     SP+YSP+SP+YSPTSP Y+  SP Y+ T+P+++P
Sbjct: 1503 TPPMTPVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPLYAAASPRYASTTPNFNP 1562

Query: 1599 TSPSYSPTSPAYSPTSPAYSPTS-------------------PAYSPTS----------- 1628
             S  YSP++  YSPTSP YSPTS                    AYSP+S           
Sbjct: 1563 QSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGNAYSPSSTNYSPNSPSYS 1622

Query: 1629 -----------------PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
                             P YSPTSPSYSPTSP+Y+P +PSYSPTSP+YS  SP YSP SP
Sbjct: 1623 PTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYSPTSPNYS-ASPHYSPASP 1681

Query: 1672 GY-----------------------SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYS 1708
             Y                       SP SP Y+P SP YSP SP Y+P S  YSPS    
Sbjct: 1682 AYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQH 1741

Query: 1709 PSSPRLSP-ASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSS 1767
              S + SP  S YS TSP YSP  S YSP+S  YSP+SPTY+P++         +YSP+S
Sbjct: 1742 SPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTA--------RNYSPTS 1793

Query: 1768 PQYSPSAGYS 1777
              YSP+   +
Sbjct: 1794 LMYSPTGAIA 1803



 Score =  198 bits (503), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 144/311 (46%), Positives = 183/311 (58%), Gaps = 69/311 (22%)

Query: 1532 GYSPT-SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1590
            G +P+ +P  +P SP YSPTSP Y+ +SP  +  SP+YSP+SP+YSPTSP Y+  SP Y+
Sbjct: 1497 GSTPSMTPPMTPVSPSYSPTSPNYTASSPGGA--SPNYSPSSPNYSPTSPLYAAASPRYA 1554

Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYSPTS 1649
             T+P+++P S  YSP++  YSPTSP YSPTS    P+SPS++ + S  YSP + +YSP+S
Sbjct: 1555 STTPNFNPQSTGYSPSASGYSPTSPVYSPTSNF--PSSPSFAGSGSNMYSPGN-AYSPSS 1611

Query: 1650 ----------------------------PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
                                        P YSPTSPSYSPTSP Y+P +P YSPTSP+YS
Sbjct: 1612 TNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYSPTSPNYS 1671

Query: 1682 PTSPTYSPTSPSYNPQSAKY----------------SP-SLAYSPSSPRLSPASP-YSPT 1723
              SP YSP SP+Y+   AKY                SP S  Y+P SP+ SPASP YSPT
Sbjct: 1672 -ASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPT 1730

Query: 1724 SP-------------NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY 1770
            SP              YSPT S+YS TSP YSP+   YSPSS       +P Y+P++  Y
Sbjct: 1731 SPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSST-KYSPTSPTYTPTARNY 1789

Query: 1771 SP-SAGYSPSA 1780
            SP S  YSP+ 
Sbjct: 1790 SPTSLMYSPTG 1800



 Score =  189 bits (481), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 149/304 (49%), Positives = 187/304 (61%), Gaps = 55/304 (18%)

Query: 1546 GYSPT-SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1604
            G +P+ +P  +P SPSYSPTSP+Y+ +SP  +  SP+YSP+SP+YSPTSP Y+  SP Y+
Sbjct: 1497 GSTPSMTPPMTPVSPSYSPTSPNYTASSPGGA--SPNYSPSSPNYSPTSPLYAAASPRYA 1554

Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS-----PS--------YSPTSPSYSPTS-- 1649
             T+P ++P S  YSP++  YSPTSP YSPTS     PS        YSP + +YSP+S  
Sbjct: 1555 STTPNFNPQSTGYSPSASGYSPTSPVYSPTSNFPSSPSFAGSGSNMYSPGN-AYSPSSTN 1613

Query: 1650 --------------------------PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
                                      P YSPTSPSYSPTSP Y+P +P YSPTSP+YS  
Sbjct: 1614 YSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATPSYSPTSPNYS-A 1672

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL---SPASP-YSPTSPNYSPTSSSYSPTSP 1739
            SP YSP SP+Y+   AKYSP+             SP SP Y+P SP YSP S  YSPTSP
Sbjct: 1673 SPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSP 1732

Query: 1740 SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAG-YSPSAPGYSPSSTSQYTPQTNRD 1798
             YSPSSP +SPS+ Y+  G    YS +SP+YSP+   YSPS+  YSP+S + YTP T R+
Sbjct: 1733 LYSPSSPQHSPSNQYSPTGST--YSATSPRYSPNMSIYSPSSTKYSPTSPT-YTP-TARN 1788

Query: 1799 DSTT 1802
             S T
Sbjct: 1789 YSPT 1792


>gi|188532145|gb|ACD63084.1| RNA polymerase II largest subunit [Drimys winteri]
          Length = 1010

 Score = 1916 bits (4963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 900/1010 (89%), Positives = 956/1010 (94%), Gaps = 10/1010 (0%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPMFHIGF+KTVLSIMR VCFNCSK+LADE+DHKFKQA+K++NPK+RL+K+LDAC
Sbjct: 1    HLELAKPMFHIGFLKTVLSIMRCVCFNCSKVLADEEDHKFKQAMKVKNPKHRLRKVLDAC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            KNKTKC+GGDEIDV GQD EEP+KK +GGCGAQQPKLT+EGMKMIAEYKA +KKNDDQEQ
Sbjct: 61   KNKTKCDGGDEIDVQGQDSEEPVKKPRGGCGAQQPKLTVEGMKMIAEYKATKKKNDDQEQ 120

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP----------I 251
            LPEPVERKQ L+AERVL +LKRISDEDC+LLGL+PKYARPDWMILQVLP          +
Sbjct: 121  LPEPVERKQQLSAERVLSILKRISDEDCRLLGLDPKYARPDWMILQVLPIPPPPVRPSVM 180

Query: 252  PPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 311
                 R  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ
Sbjct: 181  MDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 240

Query: 312  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 371
            PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPWSIA
Sbjct: 241  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIA 300

Query: 372  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL 431
            LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLEL
Sbjct: 301  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL 360

Query: 432  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 491
            GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN
Sbjct: 361  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 420

Query: 492  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 551
            MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN
Sbjct: 421  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 480

Query: 552  ILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDT 611
            ILMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQINL R +AWH++ + G +T GDT
Sbjct: 481  ILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLIRQSAWHSETETGFITPGDT 540

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
             VRIE+GELL GTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FS
Sbjct: 541  QVRIERGELLCGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFS 600

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDTIADA TM+TI++TISKAKN+VK LI  AQDK+LE EPGRTM ESFEN+VNQVLN
Sbjct: 601  IGIGDTIADAATMDTISETISKAKNDVKELIMAAQDKALEAEPGRTMTESFENRVNQVLN 660

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARD+AGSSAQ SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+ RT
Sbjct: 661  KARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIGRT 720

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK
Sbjct: 721  LPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 780

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ LDSLKMKK+EFD  FR+E+D 
Sbjct: 781  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKAEFDNVFRYEIDN 840

Query: 912  ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
            +NWNP+YM+ E+++DLKTI+E R+VFDAEVQKLEADRYQL +EIAT+GD+SWP+PVNLKR
Sbjct: 841  DNWNPSYMVPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGSEIATTGDNSWPMPVNLKR 900

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            LIWNAQKTFKVD RRPS MHPME+VEAVDKLQERLKVVPG+DP+S+EAQKNATLFFNILL
Sbjct: 901  LIWNAQKTFKVDLRRPSGMHPMEIVEAVDKLQERLKVVPGDDPISMEAQKNATLFFNILL 960

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            RSTFASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 961  RSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1010


>gi|66815437|ref|XP_641735.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
 gi|166202448|sp|P35084.2|RPB1_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb1; Short=RNA
            polymerase II subunit B1; AltName: Full=DNA-directed RNA
            polymerase III subunit A
 gi|60469758|gb|EAL67745.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
          Length = 1727

 Score = 1910 bits (4947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 951/1567 (60%), Positives = 1163/1567 (74%), Gaps = 96/1567 (6%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            M   FP S AE+ KV+ VQFGILSPDEIR MSV ++EH ET E GKPK GGL DP +GTI
Sbjct: 1    MAAFFPPSSAELRKVKRVQFGILSPDEIRNMSVARVEHPETYENGKPKAGGLLDPAMGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            D+  +C+TC+  MAECPGHFGH+ELAKP+FHIGF+ TVL I+R VC++CSK+L D ++H 
Sbjct: 61   DKTQRCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHS 120

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGG----DEIDVPGQDGEEPLKKNKGGCGAQQP 176
            F+QALKIRN K+RL  ++D CKNK  C  G    +E D+   D E       GGCG   P
Sbjct: 121  FRQALKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVKHGGCGNVLP 180

Query: 177  KLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
            K+T E +K+I E+K         +   E +E+K  L+AERVL +LKRI DED + +G+NP
Sbjct: 181  KITKEDLKIIVEFK---------DVTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINP 231

Query: 237  KYARPDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
             +AR DWMI  VLP          +     R  DDLTH+LA I++ N  L+RQE+NGAPA
Sbjct: 232  DWARADWMIATVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPA 291

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            HII+E  Q LQFH+ATY DNE+PG P+A QRSGRP+KSI  RLK KEGRIRGNLMGKRVD
Sbjct: 292  HIIAEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVD 351

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP ++IDQ+GVP SIALNLTYPETVTP+NI++++EL+  GP   PG   AK
Sbjct: 352  FSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPG---AK 408

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            YIIR+DG R DLR++KK SD HLE GYKVERH+NDGD V+FNRQPSLHKMS+MGHRIK+M
Sbjct: 409  YIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVM 468

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            PYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV+E+MMVP+ IVSPQSNRPVMGI
Sbjct: 469  PYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGI 528

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDTLLG R  TKRD F+EKD+ MNILMW   +DGKVP P ILKP+ LWTGKQ+F+LIIP
Sbjct: 529  VQDTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP 588

Query: 587  KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
              INL R  + H D +    +AGDT V IE+GELL+G LCK++LG + GS+IHV+  E G
Sbjct: 589  -DINLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHG 647

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             D  R F+  TQ +VN+WL+   F++GIGDTIAD+ TM  +  TIS AKN VK LI +AQ
Sbjct: 648  HDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQ 707

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +K  E +PG++++E+FE KVNQVLN ARD AGSSAQ SLSE NNLKAMVTAGSKGSFINI
Sbjct: 708  NKQFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINI 767

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQM ACVGQQNVEGKRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM
Sbjct: 768  SQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 827

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKTSETGYIQRRLVKAMED+ +KYD TVRNSLGDVIQF YGEDG+D  ++
Sbjct: 828  GGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFV 887

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E+Q++DSL+   +E ++ +R ++D+ ++   +M    I+ ++     RD  + E +++++
Sbjct: 888  ENQSIDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRNDSLTRDTLEKEFERIKS 947

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L  EI  SG+++WPLPVNL+RLI NAQK F +D RR SD++P  VV  ++KL  RL
Sbjct: 948  DRSLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARL 1007

Query: 1007 KVVPGEDPLS---------VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGE 1057
            K++   D             E   NAT+ F+IL+RSTFASKRVL E RLT +AF WV GE
Sbjct: 1008 KIIATADTTEDDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGE 1067

Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
            IES+FLQ+L  PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN+A
Sbjct: 1068 IESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIA 1127

Query: 1118 KKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVE 1177
            K++KTPSL+++LKP +    +RAK V+  LEYTTL +VT ATE++YDPDP  TII ED E
Sbjct: 1128 KQVKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAE 1187

Query: 1178 FVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFND 1237
            FV SY+E+PDE+I    +SPWLLRIEL+R M+ DKKL+MA + + + ++F   L CIF+D
Sbjct: 1188 FVNSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSD 1247

Query: 1238 DNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------- 1284
            DNA+KLILRIR++  +  KG  ND   +DD FL++IESNML+EM LR             
Sbjct: 1248 DNAEKLILRIRMVESQETKGTDND---DDDQFLRRIESNMLSEMVLRGIKGIKKVFMRTD 1304

Query: 1285 -----------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                   GV+LL VM H DVD  RTTSN ++EII+VLGIEAVR 
Sbjct: 1305 DKIPKVTENGGFGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRN 1364

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ALL ELR VISFDGSYVNYRHLAIL D MTYRGHLMAITRHGINR +TGP+MRCSFEETV
Sbjct: 1365 ALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETV 1424

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLP-----SY 1436
            +IL+DAA+F+E+D ++GVTENI+LGQL P+GTG   ++LN +M+KNA  + LP     SY
Sbjct: 1425 EILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNVSY 1484

Query: 1437 MEGLEFGMTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS 1494
             +      TP+ S   G  TP+H+   +P   F+   R        FSP       S  +
Sbjct: 1485 PD-TPGSQTPSYSYGDGSTTPFHNPYDAPLSPFNETFR------GDFSP-------SAMN 1530

Query: 1495 SPGYSPS 1501
            SPGY+ +
Sbjct: 1531 SPGYNAN 1537


>gi|194889556|ref|XP_001977109.1| RNA polymerase II 215kD subunit [Drosophila erecta]
 gi|190648758|gb|EDV46036.1| RNA polymerase II 215kD subunit [Drosophila erecta]
          Length = 1889

 Score = 1909 bits (4946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1046/1925 (54%), Positives = 1332/1925 (69%), Gaps = 195/1925 (10%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDV-PGQDGEEPLKK-NKGGCGAQQPKLTIE 181
            +K +  P+ RL  + D CK KT CEGG+++D+  G    +P KK   GGCG  QP +   
Sbjct: 127  MKSKGQPRKRLAYVYDLCKGKTICEGGEDMDITKGNQQPDPNKKPGHGGCGHYQPSIRRT 186

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ + AE+K Q   N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARP
Sbjct: 187  GLDLTAEWKHQ---NEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYARP 237

Query: 242  DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            DWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  LR+ E +GA AH+I E
Sbjct: 238  DWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQE 297

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 298  NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD
Sbjct: 358  VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRD 414

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 415  NGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 475  RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTL 534

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
               RK+TKRD FI ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N+
Sbjct: 535  TAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNM 594

Query: 592  FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+G 
Sbjct: 595  IRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGH 654

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            D A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +
Sbjct: 655  DIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHN 714

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 715  MELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 774

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 775  QVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E
Sbjct: 835  GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVE 894

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
             Q + ++K+    F+K F+F+     W N  YM + + DD+  IKE+ D  +A +Q+LEA
Sbjct: 895  FQNMPTVKLSNKAFEKRFKFD-----WSNERYMRKVFTDDV--IKEMTDSSEA-IQELEA 946

Query: 947  DRYQLA------TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            +  +L        +I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V++ V 
Sbjct: 947  EWDRLVGDRDSLRQIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVK 1006

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L ER  +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+
Sbjct: 1007 GLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RF Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK 
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 1126

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            K PSL+VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV 
Sbjct: 1127 KAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
             YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNA
Sbjct: 1187 VYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNA 1244

Query: 1241 DKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------- 1286
            DKL+LRIRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+           
Sbjct: 1245 DKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1304

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                         +++ V+   DVD  RT+SN + EI +VLGIE
Sbjct: 1305 QTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIE 1364

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            AVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSF
Sbjct: 1365 AVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1424

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPS 1435
            EETVD+L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S
Sbjct: 1425 EETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGS 1484

Query: 1436 YMEG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
             M G     +  G TP+ +P   TP+ +   +P Y FSP   +S +T        GG +F
Sbjct: 1485 SMLGGAAMFIGGGSTPSMTP-PMTPWAN-CNTPRY-FSPPGHVSAMTP-------GGPSF 1534

Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS---------PGYSPTSPGYSPTSPTYS 1541
            SP+++   S  SP +SP+ PG SP+SPG S +          P YSPTSP Y+ +SP   
Sbjct: 1535 SPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSP--G 1592

Query: 1542 PSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-- 1599
             +SP YSP+SP YSPTSP Y+  SP Y+ T+P+++P S  YSP+S  YSPTSP YSPT  
Sbjct: 1593 GASPNYSPSSPNYSPTSPLYASASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTPH 1652

Query: 1600 ---SPSYSPT-SPAYSPTSPAYSPTSP----------------------------AYSPT 1627
               SPS++ + S  YSP + AYSP+S                              YSPT
Sbjct: 1653 FQSSPSFAGSGSNIYSPAN-AYSPSSANYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPT 1711

Query: 1628 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS-------------------- 1667
            SPSYSPTSP+Y+P +PSYSPTSP+YS  SP YSP SPAYS                    
Sbjct: 1712 SPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSY 1770

Query: 1668 ---PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTS 1724
               P SP Y+P SP YSP SP YSPTSP Y+P S ++SPS  YSP+       S YS TS
Sbjct: 1771 DGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSATS 1824

Query: 1725 PNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPG 1782
            P YSP  S YSP+S  YSP+SPTY+P++         +YSP+SP YSP+A   YSP++P 
Sbjct: 1825 PRYSPNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPTSPA 1876

Query: 1783 YSPSS 1787
            YSPSS
Sbjct: 1877 YSPSS 1881


>gi|188532153|gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orientale]
          Length = 1010

 Score = 1908 bits (4943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 898/1010 (88%), Positives = 949/1010 (93%), Gaps = 10/1010 (0%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPMFHIGFMK VLSIMR VCFNCSKILADE+DHKFKQ+ +I+NPK+RL+K+LDAC
Sbjct: 1    HLELAKPMFHIGFMKIVLSIMRCVCFNCSKILADEEDHKFKQSQRIKNPKHRLRKVLDAC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            KNKTKC+GGDEIDV  +D E+P+KK++GGCGAQQPKLTIEGMKMIAEYK QRKK DD EQ
Sbjct: 61   KNKTKCDGGDEIDVQDEDLEKPVKKSRGGCGAQQPKLTIEGMKMIAEYKIQRKKTDDPEQ 120

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP----------I 251
            LPEPVERKQ LTAERVL VLKRISDEDC LLGLNPKYARPDWMILQVLP          +
Sbjct: 121  LPEPVERKQQLTAERVLSVLKRISDEDCILLGLNPKYARPDWMILQVLPIPPPPVRPSVM 180

Query: 252  PPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 311
                 R  DDLTHQLAMIIRHNENLR+QERNGAPAHII EFAQLLQFHIATYFDNELPGQ
Sbjct: 181  MDTSARSEDDLTHQLAMIIRHNENLRKQERNGAPAHIILEFAQLLQFHIATYFDNELPGQ 240

Query: 312  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 371
            PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPWSIA
Sbjct: 241  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIA 300

Query: 372  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL 431
            LNLTYPETVTPYNIERLKELVEYGPHPP GKTGAKYIIR+DGQRLDLRYLKKSSDHHLEL
Sbjct: 301  LNLTYPETVTPYNIERLKELVEYGPHPPVGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL 360

Query: 432  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 491
            GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN
Sbjct: 361  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 420

Query: 492  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 551
            MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN
Sbjct: 421  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 480

Query: 552  ILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDT 611
            ILMWWEDFDGKVP PTILKPRPLWTGKQVFNLIIPKQINL RT+AWH++N+ G +T GDT
Sbjct: 481  ILMWWEDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQINLLRTSAWHSENETGFITPGDT 540

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
             VRIE+GELL+GTLCKK LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FS
Sbjct: 541  QVRIERGELLTGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFS 600

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDTIADA TME INDTISKAKN VK+LI+ AQ+KSLEPEPGRTMMESFEN+VNQVLN
Sbjct: 601  IGIGDTIADASTMEKINDTISKAKNEVKDLIRMAQEKSLEPEPGRTMMESFENRVNQVLN 660

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRT
Sbjct: 661  KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRT 720

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK
Sbjct: 721  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 780

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK EFDK +RFE D+
Sbjct: 781  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDKVYRFEFDD 840

Query: 912  ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
            +NW PNYM  +Y++DLK I+E R VFDAEV+KL  DR QL TEI T+GD+SWP+PVNL+R
Sbjct: 841  DNWTPNYMQSDYVEDLKNIREFRHVFDAEVKKLADDRLQLGTEITTTGDNSWPMPVNLRR 900

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            LIWNAQKTFKVDPRRPSDMHPME+VEA+DKLQERLKVVPG+D +S+EAQKNATLFFNILL
Sbjct: 901  LIWNAQKTFKVDPRRPSDMHPMEIVEAIDKLQERLKVVPGDDSMSMEAQKNATLFFNILL 960

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            RSTFASKRVLKEH LTREAF+WVIGE+ESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 961  RSTFASKRVLKEHHLTREAFDWVIGEVESRFLQSLVAPGEMIGCVAAQSI 1010


>gi|299116996|emb|CBN73767.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1904

 Score = 1905 bits (4936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1014/1919 (52%), Positives = 1285/1919 (66%), Gaps = 206/1919 (10%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQ--------IEHGETT----ERGKPK 48
            M ++F +S A + +V+ +QFGILSPDE+RQMSV+Q        I  G T     + G   
Sbjct: 1    MPSQFSFSSARLCRVQKLQFGILSPDEVRQMSVLQKVKVNDVDIPEGVTKYDLYKDGSAV 60

Query: 49   PGGLSDPRLGTIDRKMKCETCTA--------NMAECPGHFGHLELAKPMFHIGFMKTVLS 100
             GG +DPR+GT+D   +C TC           + +CPGHFGH+ELA+P++H GF+   L 
Sbjct: 61   YGGANDPRMGTLDFNTRCRTCDCTYTGIGGNQVNDCPGHFGHMELARPVYHCGFLDVTLK 120

Query: 101  IMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGG---------- 150
            ++RSVCF+CS++  D+ D K+K+AL I+NPK RL  I + C+N  KC  G          
Sbjct: 121  VLRSVCFHCSRLRFDKSDMKYKRALLIKNPKTRLSYIHEHCRNAKKCVFGTGDLAGGGMD 180

Query: 151  --DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
                    G +G     ++  GCG   PK T +G+++  EY        D + +P   +R
Sbjct: 181  LDGMGGENGGEGGGGGGEHASGCGGLLPKFTRQGLQVEVEYPP------DMDDVPRSGDR 234

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS--------- 259
            +Q L+A +V  + K IS+ED   LGLNP+Y+RPDW+++ VLP+PPP VRPS         
Sbjct: 235  RQYLSASKVHDIFKNISEEDMVTLGLNPQYSRPDWLVITVLPVPPPHVRPSVALDAGARS 294

Query: 260  -DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRS 318
             DDLTHQL  I + N  L    R G PAHI+  F QLLQ+ +A  FDNE  GQP+ TQRS
Sbjct: 295  EDDLTHQLVNICKANMRLEACVRTGEPAHIVESFEQLLQYKVAALFDNERAGQPQETQRS 354

Query: 319  GRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPE 378
            G+P+K++ +RLK KEGRIRGNLMGKRVDFSARTVIT DP + IDQ+GVP SIALNLT PE
Sbjct: 355  GKPLKTLRARLKGKEGRIRGNLMGKRVDFSARTVITADPNLGIDQVGVPKSIALNLTVPE 414

Query: 379  TVTPYNIERLKELVEYGP--HPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVE 436
             VT +N+E + +LV  GP  HP     GA+YI+R DG R+DLR+++  +   L+ GY VE
Sbjct: 415  LVTAFNVEEMAQLVARGPLEHP-----GARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVE 469

Query: 437  RHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 496
            RHL D D ++FNRQPSLHKMSIMGHR+K++ +STFR+NLSVTSPYNADFDGDEMN+HVPQ
Sbjct: 470  RHLRDDDIIIFNRQPSLHKMSIMGHRVKVLDWSTFRMNLSVTSPYNADFDGDEMNLHVPQ 529

Query: 497  SFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW 556
            S   +AE  ELMMVP+ IVSPQSN+PVMGI  D+LLG  K+TKRDTF+E+D+ MN+LMW 
Sbjct: 530  SLVAKAEAQELMMVPRNIVSPQSNKPVMGI--DSLLGVCKMTKRDTFVERDLLMNLLMWV 587

Query: 557  EDFDGKVPQPTILKPRPLWTGKQVFNLIIPK-------QINLFRTAAWHADNDKGI--LT 607
            E +DGKVP P ILKP+PLWTGKQ+F+LI PK       ++NL  +A  H    KG   L 
Sbjct: 588  ETWDGKVPAPAILKPKPLWTGKQLFSLICPKVHGSRTGKVNLETSANGHP---KGANPLN 644

Query: 608  AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 667
              DT V I +GEL+ G + KKT+G+    LIHV W E G D  R F+   Q LVN WL+ 
Sbjct: 645  NSDTKVLIHEGELMMGNIDKKTVGSGAQGLIHVSWLEKGWDVTRLFMNMIQKLVNNWLVV 704

Query: 668  NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVN 727
             +FSIG+ DT+AD +T+ TI   I  AK NV++L++Q Q   L  +PG++MMES E+ +N
Sbjct: 705  TSFSIGVADTVADTETIMTIGGIIDTAKRNVQSLVEQGQKGELTMQPGKSMMESLESSIN 764

Query: 728  QVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 787
            +VLNTARDE+G+SAQ SL+E N +KAM  AGSKGSFINISQ+ ACVGQQNVEG+RIP+GF
Sbjct: 765  KVLNTARDESGTSAQVSLNERNAVKAMADAGSKGSFINISQILACVGQQNVEGQRIPYGF 824

Query: 788  VDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQR 847
              RTLPHF KDD GPESRGFVENSYLRGL+PQEFFFHAMGGREGLIDTAVKT+ETGYIQR
Sbjct: 825  KRRTLPHFAKDDLGPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQR 884

Query: 848  RLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF 907
            RLVKA+E +  KYDGT+RN    V+QFLYGEDGMD VW+E Q  D L M K +F KA+  
Sbjct: 885  RLVKALEAVSAKYDGTLRNQNNQVVQFLYGEDGMDGVWVEKQRFDILLMSKKDFRKAYEI 944

Query: 908  EMDEENW-------NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSG- 959
            +++   +          Y+ +E +D+ KT + LR     E+++L  D+  L    A  G 
Sbjct: 945  DVNHAKFGFSQHVTGQRYLTREVVDEAKTDETLRIELADELEQLRMDQKNLVVIFAARGP 1004

Query: 960  -DSSWP---LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPL 1015
             + + P   +PVN+KRL+WN+QK F++     SDM P  V+  V +L E L VV GED L
Sbjct: 1005 EEGATPVAQVPVNIKRLVWNSQKMFQIKSYGESDMSPTYVIRRVRELCEGLSVVTGEDSL 1064

Query: 1016 SVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGC 1075
            SVEAQ NAT+ F IL+RS  ++KR L  +RL + AF++VIGEI ++F+ S V PGEM G 
Sbjct: 1065 SVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEIHAKFMSSKVGPGEMCGV 1124

Query: 1076 VAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK---PG 1132
            +AAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR++EIINVAK ++TPSL+++L+    G
Sbjct: 1125 LAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAG 1184

Query: 1133 VNST--KERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM---PD 1187
             +    +E AK V   LEY TL  +T +T+++YDPDP  T+++EDVE ++ ++++    +
Sbjct: 1185 ADEAEGQEVAKRVVDILEYVTLGDITTSTQIYYDPDPRSTVVDEDVELLEGHFDIQEEEE 1244

Query: 1188 EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1247
            +D   ++  PWLLR+ELNRE + DK+L +  +A+++   FD  L  I +D N++KL+LRI
Sbjct: 1245 DDKDTDRARPWLLRMELNREAVFDKRLDVVEIAKRVVAYFDGGLHVIRSDQNSEKLVLRI 1304

Query: 1248 RIMNDEAPKGELNDES-----AEDDVFLKKIESNML------------------------ 1278
            R+++D   K E   E+     A+D   LK +E N+L                        
Sbjct: 1305 RVLDDVPDKIEAEPEAEDMAEADDVAMLKHLEKNLLRLQLSGIAGISKVYMSEVTKPKFD 1364

Query: 1279 ---------TEMALR--GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                      E  L   G NL+A +C E +D RRT SN ++E   VLGIE  R +LL E 
Sbjct: 1365 EINGFAQRHKEWVLETDGTNLMAALCAEQIDPRRTVSNDVVECCTVLGIEGARGSLLKEF 1424

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
            R V+  DGSYVNYRHL+ L D MT+RGHLMAITRHGINR D GPM+R SFEETV+IL++A
Sbjct: 1425 RAVVERDGSYVNYRHLSTLIDVMTFRGHLMAITRHGINRVDNGPMLRSSFEETVEILMEA 1484

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL-QLPSYMEGL------ 1440
            AVFAE+D L+GVT+NIMLGQ A +GTG   L L++  L  A+EL QL + M  L      
Sbjct: 1485 AVFAEADNLKGVTDNIMLGQFANLGTGTMDLLLDESKLSQAMELTQLDTTMARLSGAAGS 1544

Query: 1441 -------EFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPT 1493
                    +  TP+ +P +GTP+     SPG   SP +  +P   + FSP    +A SP 
Sbjct: 1545 GAAGGAGGYMGTPSMTP-AGTPHFTPGFSPGA--SPGIS-TPFGASAFSP----VANSPF 1596

Query: 1494 SSPGYSPSSPGYSPSSPGYS--------------------------------PTSPGYSP 1521
            S   +SP S   SP SPG                                  PTSP YSP
Sbjct: 1597 SGGSFSPHS---SPVSPGMGIGSSPAFSPSSPRYSPDSPSFSPSSPASPAYSPTSPAYSP 1653

Query: 1522 TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1581
            TSP YSPTSP YSPTSP YSP+SP YSPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+
Sbjct: 1654 TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA 1713

Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
            YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSPAYSPTSPAYSPTSP+YSPTSP+YSPT
Sbjct: 1714 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT 1773

Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY 1701
            SP+YSPTSP+YSPTSP+YSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP         
Sbjct: 1774 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPG-------- 1825

Query: 1702 SPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP--SSPTYSPSSPYNAGG 1758
                A SP+SP  SP      TSP     +S    TSP YSP  +SP    SSPY+  G
Sbjct: 1826 ----AGSPASPEDSPG-----TSPGAGGATSPAGGTSP-YSPMGTSPYAGASSPYSPDG 1874


>gi|194762514|ref|XP_001963379.1| GF20366 [Drosophila ananassae]
 gi|190629038|gb|EDV44455.1| GF20366 [Drosophila ananassae]
          Length = 1889

 Score = 1905 bits (4935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1045/1924 (54%), Positives = 1333/1924 (69%), Gaps = 193/1924 (10%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIE 181
            +K +  P+ RL  + D CK KT CEGG+++D+  ++ + +P KK   GGCG  QP +   
Sbjct: 127  MKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRT 186

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ + AE+K     N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARP
Sbjct: 187  GLDLTAEWK---HPNEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYARP 237

Query: 242  DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            DWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  LR+ E +GA AH+I E
Sbjct: 238  DWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQE 297

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 298  NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD
Sbjct: 358  VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRD 414

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 415  NGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 475  RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTL 534

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
               RK+TKRD FI ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N+
Sbjct: 535  TAVRKMTKRDVFITREQMMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNM 594

Query: 592  FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+G 
Sbjct: 595  IRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGH 654

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            D A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +
Sbjct: 655  DIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQCAIKKAKDDVINVIQKAHN 714

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 715  MELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 774

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 775  QVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E
Sbjct: 835  GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVE 894

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
             Q + ++K+    F+K F+F+     W N  YM + + DD+  IKE+ D  DA +Q+LEA
Sbjct: 895  FQNMPTVKLSNKSFEKRFKFD-----WSNERYMRKVFTDDV--IKEMTDSSDA-IQELEA 946

Query: 947  DRYQLAT------EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            +  +L T      +I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V++ V 
Sbjct: 947  EWDRLVTDRDSLRQIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVK 1006

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L ER  +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+
Sbjct: 1007 GLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RF Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK 
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 1126

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            K PSL+VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV 
Sbjct: 1127 KAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPKRTVISEDQEFVN 1186

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
             YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNA
Sbjct: 1187 VYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNA 1244

Query: 1241 DKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------- 1286
            DKL+LRIRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+           
Sbjct: 1245 DKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1304

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                         +++ V+   DVD  RT+SN + EI +VLGIE
Sbjct: 1305 QTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIE 1364

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            AVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSF
Sbjct: 1365 AVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1424

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPS 1435
            EETVD+L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S
Sbjct: 1425 EETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGS 1484

Query: 1436 YMEG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
             M G     +  G TP+ +P   TP+ +   +P Y FSP   +S +T        GG +F
Sbjct: 1485 SMLGGAAMFIGGGSTPSMTP-PMTPWVN-CNTPRY-FSPPGHVSAMTP-------GGPSF 1534

Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS--PGYSPTSPGYSPTSPTYSPSSPGYS 1548
            SP+++   S  SP +SP+ PG SP+SPG S +   P     SP YSPTSP Y+ SSPG +
Sbjct: 1535 SPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGA 1594

Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS- 1607
              SP YSP+SP+YSPTSP Y+ TSP Y+ T+P+++P S  YSP+S  YSPTSP YSPTS 
Sbjct: 1595 --SPNYSPSSPNYSPTSPLYATTSPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTSN 1652

Query: 1608 ----PAYSPT-SPAYSPTSP----------------------------------AYSPTS 1628
                P+++ + S  YSP +                                    YSPTS
Sbjct: 1653 YQSSPSFAGSGSNMYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTS 1712

Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS--------------------- 1667
            PSYSPTSP+Y+P +PSYSPTSP+YS  SP YSP SPAYS                     
Sbjct: 1713 PSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1771

Query: 1668 --PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
              P SP Y+P SP YSP SP YSPTSP Y+P S ++SPS  YSP+       S YS TSP
Sbjct: 1772 GSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSATSP 1825

Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPGY 1783
             YSP  S YSP+S  YSP+SPTY+P++         +YSP+SP YSP+A   YSP++P Y
Sbjct: 1826 RYSPNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPTSPAY 1877

Query: 1784 SPSS 1787
            SPSS
Sbjct: 1878 SPSS 1881



 Score = 42.4 bits (98), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 17/88 (19%)

Query: 1707 YSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSP 1765
            Y+ SSP    ASP YSP+SPNYSPTS  Y+ TSP Y+ ++P ++P               
Sbjct: 1586 YTASSP--GGASPNYSPSSPNYSPTSPLYATTSPRYASTTPNFNPQ-------------- 1629

Query: 1766 SSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
            S+     S+GYSP++P YSP+S  Q +P
Sbjct: 1630 STGYSPSSSGYSPTSPVYSPTSNYQSSP 1657


>gi|195446609|ref|XP_002070845.1| GK25468 [Drosophila willistoni]
 gi|194166930|gb|EDW81831.1| GK25468 [Drosophila willistoni]
          Length = 1890

 Score = 1905 bits (4934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1036/1927 (53%), Positives = 1326/1927 (68%), Gaps = 198/1927 (10%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIE 181
            +K +  P+ RL  + D CK KT CEGG+++D+  ++ + +P KK   GGCG  QP +   
Sbjct: 127  MKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHFQPSIRRT 186

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ + AE+K   + +          E+K  ++AERV  +LK I+DE+C +LG++PKYARP
Sbjct: 187  GLDLTAEWKQVAEASQ---------EKKIIVSAERVWEILKHITDEECFILGMDPKYARP 237

Query: 242  DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            DWMI+ VLP+PP  VRP+          DDLTH+LA II+ N  LR+ E +GA AH+I E
Sbjct: 238  DWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQE 297

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 298  NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD
Sbjct: 358  VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRD 414

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 415  NGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 475  RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTL 534

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
               RK+TKRD FI ++  MN+LM+   +DGK+PQP ILKPRP+WTGKQ+F+LIIP  +N+
Sbjct: 535  TAVRKMTKRDVFITREQMMNLLMFLPTWDGKMPQPCILKPRPMWTGKQIFSLIIPGNVNM 594

Query: 592  FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+G 
Sbjct: 595  IRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGH 654

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            D A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +
Sbjct: 655  DIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHN 714

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              L+P PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 715  MELDPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 774

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 775  QVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E
Sbjct: 835  GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVE 894

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
             Q + ++K+    F+K F+F+     W N  YM + + D++  IKE+ D  DA +Q+LE+
Sbjct: 895  FQNMPTVKLSNKSFEKRFKFD-----WTNERYMRKVFTDEV--IKEMTDSSDA-IQELES 946

Query: 947  DRYQLAT------EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            +  +L        +I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V++ V 
Sbjct: 947  EWDRLVVDRDSLRQIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVR 1006

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L ER  +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+
Sbjct: 1007 GLLERCVIVTGNDRISKQANENATLLFQCLVRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RF Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK 
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 1126

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            K PSL+VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV 
Sbjct: 1127 KAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
             YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNA
Sbjct: 1187 VYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNA 1244

Query: 1241 DKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------- 1286
            DKL+LRIRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+           
Sbjct: 1245 DKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1304

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                         +++ V+   DVD  RT+SN + EI +VLGIE
Sbjct: 1305 QTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIE 1364

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            AVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSF
Sbjct: 1365 AVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1424

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPS 1435
            EETVD+L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S
Sbjct: 1425 EETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGS 1484

Query: 1436 YMEG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
             M G     +  G TP+ +P   TP+ +   +P Y FSP    S +T        GG +F
Sbjct: 1485 AMMGGAAMFIGGGSTPSMTP-PMTPWVN-CNTPRY-FSPQGHASSMTP-------GGPSF 1534

Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS---------PGYSPTSPGYSPTSPTYS 1541
            SP ++   S  SP +SP+ PG SP+SPG S +          P YSPTSP Y+ +SP+  
Sbjct: 1535 SPAAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPTSPSVSPSYSPTSPNYTASSPS-G 1593

Query: 1542 PSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS--------------YSPTSP 1587
             +SP YSP+SP YSPTSP Y+ TSP Y+ T+P+++  S                YSPTS 
Sbjct: 1594 GASPNYSPSSPNYSPTSPLYAATSPRYASTTPNFNLQSTGYSPSSSGYSPTSPVYSPTSN 1653

Query: 1588 SYSPTSPSYSPT-SPSYSPTSPAYSPTSPAYSPTSP---------------------AYS 1625
              S  SPS++ + S  YSP + AYSP+S  Y+P SP                      YS
Sbjct: 1654 FQS--SPSFAGSGSNMYSPGN-AYSPSSSNYTPNSPSYSPTSPSYSPSSPSYSPTSPCYS 1710

Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS------------------ 1667
            PTSPSYSPTSP+Y+P +PSYSPTSP+YS  SP YSP SPAYS                  
Sbjct: 1711 PTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSP 1769

Query: 1668 -----PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSP 1722
                 P SP Y+P SP YSP SP YSPTSP Y+P S ++SPS  YSP+       S YS 
Sbjct: 1770 SYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSA 1823

Query: 1723 TSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSA 1780
            TSP YSP  S YSP+S  YSP+SPTY+P++         +YSP+SP YSP+A   YSP++
Sbjct: 1824 TSPRYSPNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPTS 1875

Query: 1781 PGYSPSS 1787
            P YSPSS
Sbjct: 1876 PAYSPSS 1882



 Score =  100 bits (250), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 95/263 (36%), Positives = 128/263 (48%), Gaps = 89/263 (33%)

Query: 1617 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS------------- 1663
            Y+ +SP+    SP+YSP+SP+YSPTSP Y+ TSP Y+ T+P+++  S             
Sbjct: 1586 YTASSPS-GGASPNYSPSSPNYSPTSPLYAATSPRYASTTPNFNLQSTGYSPSSSGYSPT 1644

Query: 1664 -PAYSPTSPGYSPTSPSYSPT-SPTYSPTSPSYNPQSAKYSPSL---------------- 1705
             P YSPTS   S  SPS++ + S  YSP + +Y+P S+ Y+P+                 
Sbjct: 1645 SPVYSPTSNFQS--SPSFAGSGSNMYSPGN-AYSPSSSNYTPNSPSYSPTSPSYSPSSPS 1701

Query: 1706 ------AYSPSSPRLSPASP--------YSPTSPNYSPTSSSYSPTSPSY---------- 1741
                   YSP+SP  SP SP        YSPTSPNYS  S  YSP SP+Y          
Sbjct: 1702 YSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPT 1760

Query: 1742 -------------SPSSPTYSPSSPYNAGGGNPDYSPSSP-------------QYSPSAG 1775
                         SP SP Y+P SP      +P YSP+SP             QYSP+  
Sbjct: 1761 SPTYSPPSPSYDGSPGSPQYTPGSP-QYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGS 1819

Query: 1776 -YSPSAPGYSPSSTSQYTPQTNR 1797
             YS ++P YSP + S Y+P + +
Sbjct: 1820 TYSATSPRYSP-NMSIYSPSSTK 1841


>gi|195479340|ref|XP_002100852.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
 gi|194188376|gb|EDX01960.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
          Length = 1889

 Score = 1903 bits (4930), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1043/1924 (54%), Positives = 1332/1924 (69%), Gaps = 193/1924 (10%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIE 181
            +K +  P+ RL  + D CK KT CEGG+++D+  ++ + +P KK   GGCG  QP +   
Sbjct: 127  MKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRT 186

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ + AE+K Q   N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARP
Sbjct: 187  GLDLTAEWKHQ---NEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYARP 237

Query: 242  DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            DWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  LR+ E +GA AH+I E
Sbjct: 238  DWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQE 297

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 298  NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD
Sbjct: 358  VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRD 414

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 415  NGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 475  RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTL 534

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
               RK+TKRD FI ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N+
Sbjct: 535  TAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNM 594

Query: 592  FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+G 
Sbjct: 595  IRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGH 654

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            D A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +
Sbjct: 655  DIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHN 714

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 715  MELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 774

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 775  QVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E
Sbjct: 835  GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVE 894

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
             Q + ++K+    F+K F+F+     W N  YM + + DD+  IKE+ D  +A +Q+LEA
Sbjct: 895  FQNMPTVKLSNKAFEKRFKFD-----WSNERYMRKVFTDDV--IKEMTDSSEA-IQELEA 946

Query: 947  DRYQLA------TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            +  +L        +I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V++ V 
Sbjct: 947  EWDRLVGDRDSLRQIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVK 1006

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L ER  +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+
Sbjct: 1007 GLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RF Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK 
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 1126

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            K PSL+VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV 
Sbjct: 1127 KAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
             YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNA
Sbjct: 1187 VYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNA 1244

Query: 1241 DKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------- 1286
            DKL+LRIRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+           
Sbjct: 1245 DKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1304

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                         +++ V+   DVD  RT+SN + EI +VLGIE
Sbjct: 1305 QTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIE 1364

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            AVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSF
Sbjct: 1365 AVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1424

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPS 1435
            EETVD+L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S
Sbjct: 1425 EETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGS 1484

Query: 1436 YMEG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
             M G     +  G TP+ +P   TP+ +   +P Y FSP   +S +T        GG +F
Sbjct: 1485 SMLGGAAMFIGGGSTPSMTP-PMTPWVN-CNTPRY-FSPPGHVSAMTP-------GGPSF 1534

Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS--PGYSPTSPGYSPTSPTYSPSSPGYS 1548
            SP+++   S  SP +SP+ PG SP+SPG S +   P     SP YSPTSP Y+ SSPG +
Sbjct: 1535 SPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGA 1594

Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-- 1606
              SP YSP+SP+YSPTSP Y+  SP Y+ T+P+++P S  YSP+S  YSPTSP YSPT  
Sbjct: 1595 --SPNYSPSSPNYSPTSPLYASASPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTPN 1652

Query: 1607 ---SPAYSPT-SPAYSPTSP----------------------------------AYSPTS 1628
               SP+++ + S  YSP +                                    YSPTS
Sbjct: 1653 FQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTS 1712

Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS--------------------- 1667
            PSYSPTSP+Y+P +PSYSPTSP+YS  SP YSP SPAYS                     
Sbjct: 1713 PSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1771

Query: 1668 --PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
              P SP Y+P SP YSP SP YSPTSP Y+P S ++SPS  YSP+       S YS TSP
Sbjct: 1772 GSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSATSP 1825

Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPGY 1783
             YSP  S YSP+S  YSP+SPTY+P++         +YSP+SP YSP+A   YSP++P Y
Sbjct: 1826 RYSPNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPTSPAY 1877

Query: 1784 SPSS 1787
            SPSS
Sbjct: 1878 SPSS 1881



 Score = 41.2 bits (95), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 21/84 (25%)

Query: 1730 TSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAG-------------- 1775
            T+SS    SP+YSPSSP YSP+SP  A   +P Y+ ++P ++P +               
Sbjct: 1587 TASSPGGASPNYSPSSPNYSPTSPLYA-SASPRYASTTPNFNPQSTGYSPSSSGYSPTSP 1645

Query: 1776 -YSP-----SAPGYSPSSTSQYTP 1793
             YSP     S+P ++ S ++ Y+P
Sbjct: 1646 VYSPTPNFQSSPSFAGSGSNIYSP 1669


>gi|170062578|ref|XP_001866731.1| DNA-directed RNA polymerase II largest subunit [Culex
            quinquefasciatus]
 gi|167880465|gb|EDS43848.1| DNA-directed RNA polymerase II largest subunit [Culex
            quinquefasciatus]
          Length = 1874

 Score = 1902 bits (4927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1014/1918 (52%), Positives = 1280/1918 (66%), Gaps = 252/1918 (13%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I++ ET E G+PK  GL DPR G I+R  +
Sbjct: 5    SKAPIRTVKRVQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIERTSR 64

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  
Sbjct: 65   CQTCAGNMTECPGHFGHIDLAKPVFHIGFVTKTIKILRCVCFYCSKMLVSPSNPKIKEIV 124

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP---LKKNKGGCGAQQPKLTI 180
            +K +  P+ RL  + D CK K  CEGG+++D+  +DG  P    K+  GGCG  QP L  
Sbjct: 125  IKSKGQPRKRLAYVYDLCKGKKICEGGEDMDIT-KDGAPPDPNKKQGHGGCGHYQPSLRR 183

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ +IAE+K     N+D +      E+K  +TAERV  +LK I+DE+C +LG++PK+AR
Sbjct: 184  TGLDVIAEWKTV---NEDSQ------EKKIAVTAERVWEILKHITDEECYVLGMDPKFAR 234

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMI+ VLP+PP  VRP+          DDLTH+L+ I++ N  L++ E  GA AH+I+
Sbjct: 235  PDWMIITVLPVPPLAVRPAVVMFGATKNQDDLTHKLSDIVKSNNELKKNEATGAAAHVIA 294

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG P+A Q+SG+P+KS+ SRLK KEGRIRGNLMGKRVDFSAR
Sbjct: 295  ENIKMLQFHVATLVDNDMPGMPKAMQKSGKPLKSVKSRLKGKEGRIRGNLMGKRVDFSAR 354

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP S+A N+T+PE VTP+NI+R++ELV  G    PG   AKYI+R
Sbjct: 355  TVITPDPNLRIDQVGVPRSVAQNMTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVR 411

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 412  DNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST 471

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+HVPQS ETRAE+  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 472  FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHITPRQIITPQANKPVMGIVQDT 531

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD F+EK+  MN+LM+   +DGK+PQP ILKP+PLWTGKQ+F LIIP  +N
Sbjct: 532  LTAVRKMTKRDVFLEKEQMMNLLMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVN 591

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+++ E+G
Sbjct: 592  MIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHIVFLELG 651

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             + A +F G+ Q +VN WLL    SIGIGDTIAD  T   I   I KAK +V  +I++A 
Sbjct: 652  HEIAGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPATYTEIQRAIRKAKEDVIGVIQKAH 711

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 712  NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 771

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 772  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAM 831

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 832  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETV 891

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E Q L ++K+    F+K +RF+   E        +E I +L    ++    +AE ++L  
Sbjct: 892  EFQNLPTIKLSNKVFEKRYRFDPTNERNIRRVFNEEVIKELTESGDVIQEIEAEYEQLLR 951

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L  +I  +GDS   LP NL+R+IWN QK F ++ R P+D+ P++V++ V  L ++ 
Sbjct: 952  DREAL-RQIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLKVIQGVRDLLQKC 1010

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +V G D LS +A +NATL F  L+RST  +K V +E RL  EAFEW+IGEIE+RF Q+ 
Sbjct: 1011 VIVAGTDRLSKQANENATLLFQCLVRSTLCTKYVAEEFRLINEAFEWLIGEIETRFQQAQ 1070

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
              PGEM               MTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+
Sbjct: 1071 CNPGEM---------------MTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLT 1115

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMP
Sbjct: 1116 VFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMP 1175

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNADKL+LR
Sbjct: 1176 DFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLR 1233

Query: 1247 IRIMNDEAPKGELNDE----SAEDDVFLKKIESNMLTEMALRGV---------------- 1286
            IRIMN+E  K + NDE      EDD+FL+ IE+NML++M L+G+                
Sbjct: 1234 IRIMNNEDNKFQDNDEENMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAK 1293

Query: 1287 ------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                    +++ V+   DVD  RT SN + EI +VLGIEAVR++
Sbjct: 1294 RRIVITPEGEFKAIGEWLLETDGTSMMKVLSERDVDPVRTASNDICEIFQVLGIEAVRKS 1353

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            +  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD
Sbjct: 1354 VEKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1413

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM--EGL 1440
            +L DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  +E+   S M   G+
Sbjct: 1414 VLNDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKLGMEIPHTSIMGSSGM 1473

Query: 1441 EF--GMTPARSPVSGTPYHDGMMSPGY-LFSPNLRLSPVTDAQFSPYVGGMAFSPTSS-- 1495
             F  G TP+ SP + TP+     +PGY  +SP+   S +T        GG +FSP++   
Sbjct: 1474 FFGPGATPSMSP-AMTPWQQS-QTPGYGEWSPSGPPSGMTP-------GGPSFSPSAQSD 1524

Query: 1496 ----------------------------------------PGYSPSSPGYSPSSPGYSPT 1515
                                                    P Y+ +SPG   +SPGYSPT
Sbjct: 1525 ASGMSPSWSPMPGSPSSPGPSMSPYFPSSPSASPSYSPSSPNYAAASPG--GASPGYSPT 1582

Query: 1516 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1575
            SP YSPTSP YSPTSP YSPTSP YSP+SP YSPTSP+YSPTSP YSPT+ +Y+P+SP+Y
Sbjct: 1583 SPSYSPTSPNYSPTSPRYSPTSPNYSPTSPNYSPTSPSYSPTSPLYSPTA-TYAPSSPAY 1641

Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPTSPS--------------------------------- 1602
            SPTSPSYSPTSP YSPTSPSYSPTSP+                                 
Sbjct: 1642 SPTSPSYSPTSP-YSPTSPSYSPTSPAYSPTSPSYSPSSPSYSPTSPSYSPTSPSYSPTS 1700

Query: 1603 --YSPTSPAYSPTSPAYSPTSPAYSPT---------------------------SPSYSP 1633
              Y+P +P+YSPTSP YSP+SP YSPT                           SP Y+P
Sbjct: 1701 PNYTPATPSYSPTSPNYSPSSPHYSPTSPSYSPSSPKYSPTSPSYSPTSPSYGGSPQYTP 1760

Query: 1634 TSPSYSPTSPSYSP-----------------------TSPSYSPTSPSYSPTSPAYSPTS 1670
             SP YSPTSP YSP                        SP+YSPT+  YSP   +YSP S
Sbjct: 1761 ASPQYSPTSPKYSPTSPSYSPSSPQHSPGSSGSNFMVNSPTYSPTTARYSPNMSSYSPGS 1820

Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNY 1727
              YSPTSP Y+PTSP YSP+SP+Y+P    YSPS          SPASP YSPTSP+Y
Sbjct: 1821 QKYSPTSPVYTPTSPHYSPSSPAYSPTGQGYSPS----------SPASPTYSPTSPSY 1868



 Score =  197 bits (500), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 158/402 (39%), Positives = 187/402 (46%), Gaps = 168/402 (41%)

Query: 1545 PGYSPT-SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--------------- 1588
            PG +P+ SPA +P   S +P    +SP+ P  S  +P     SPS               
Sbjct: 1477 PGATPSMSPAMTPWQQSQTPGYGEWSPSGPP-SGMTPGGPSFSPSAQSDASGMSPSWSPM 1535

Query: 1589 -------------------------------YSPTS-----PSYSPTSPSYSPTSPAYSP 1612
                                           Y+  S     P YSPTSPSYSPTSP YSP
Sbjct: 1536 PGSPSSPGPSMSPYFPSSPSASPSYSPSSPNYAAASPGGASPGYSPTSPSYSPTSPNYSP 1595

Query: 1613 TSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
            TSP YSPTSP YSPTSP+YSPTSPSYSPTSP YSPT+ +Y+P+SP+YSPTSP+YSPTSP 
Sbjct: 1596 TSPRYSPTSPNYSPTSPNYSPTSPSYSPTSPLYSPTA-TYAPSSPAYSPTSPSYSPTSP- 1653

Query: 1673 YSPTSPSYSPTSPT-----------------------------------YSPTSPSYNPQ 1697
            YSPTSPSYSPTSP                                    Y+P +PSY+P 
Sbjct: 1654 YSPTSPSYSPTSPAYSPTSPSYSPSSPSYSPTSPSYSPTSPSYSPTSPNYTPATPSYSPT 1713

Query: 1698 SAKYSPSL-----------------------------------AYSPSSPRLSPASP--- 1719
            S  YSPS                                     Y+P+SP+ SP SP   
Sbjct: 1714 SPNYSPSSPHYSPTSPSYSPSSPKYSPTSPSYSPTSPSYGGSPQYTPASPQYSPTSPKYS 1773

Query: 1720 ----------------------------YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPS 1751
                                        YSPT+  YSP  SSYSP S  YSP+SP Y+P+
Sbjct: 1774 PTSPSYSPSSPQHSPGSSGSNFMVNSPTYSPTTARYSPNMSSYSPGSQKYSPTSPVYTPT 1833

Query: 1752 SPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPG---YSPSSTS 1789
            SP+        YSPSSP YSP+  GYSPS+P    YSP+S S
Sbjct: 1834 SPH--------YSPSSPAYSPTGQGYSPSSPASPTYSPTSPS 1867


>gi|195133818|ref|XP_002011336.1| GI16472 [Drosophila mojavensis]
 gi|193907311|gb|EDW06178.1| GI16472 [Drosophila mojavensis]
          Length = 1889

 Score = 1902 bits (4927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1043/1924 (54%), Positives = 1332/1924 (69%), Gaps = 193/1924 (10%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIE 181
            +K +  P+ RL  + D CK KT CEGG+++D+   + + +P KK   GGCG  QP +   
Sbjct: 127  MKSKGQPRKRLAYVYDLCKGKTICEGGEDMDMTKDNQQVDPNKKPGHGGCGHYQPSIRRT 186

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ + AE+K     N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARP
Sbjct: 187  GLDLTAEWK---HVNEDSQ------EKKIIVSAERVWEILKHITDEECFILGMDPKYARP 237

Query: 242  DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            DWMI+ VLP+PP  VRP+          DDLTH+LA II+ N  LR+ E +GA AH+I E
Sbjct: 238  DWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQE 297

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 298  NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD
Sbjct: 358  VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRD 414

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 415  NGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 475  RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTL 534

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
               RK+TKRD FI ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N+
Sbjct: 535  TAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNM 594

Query: 592  FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             RT + H D  D G    ++ GDT V +E G+L+ G LCKKTLGTS GSL+H+ + E+G 
Sbjct: 595  IRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGH 654

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            D A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +
Sbjct: 655  DIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHN 714

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 715  MELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 774

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 775  QVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E
Sbjct: 835  GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVE 894

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
             Q + ++K+    F+K F+F+     W N  YM + + DD+  IKE+ D  DA +Q+LE+
Sbjct: 895  FQNMPTVKLSNKVFEKRFKFD-----WSNERYMRKVFTDDV--IKEMTDSSDA-IQELES 946

Query: 947  DRYQLATE------IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            +  +L ++      I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V+  V 
Sbjct: 947  EWDRLVSDRDNLRTIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVK 1006

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L ER  +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+
Sbjct: 1007 GLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RF Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK 
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 1126

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            K PSL+VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV 
Sbjct: 1127 KAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVN 1186

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
             YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNA
Sbjct: 1187 VYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNA 1244

Query: 1241 DKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------- 1286
            DKL+LRIRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+           
Sbjct: 1245 DKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1304

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                         +++ V+   DVD  RT+SN + EI +VLGIE
Sbjct: 1305 QTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIE 1364

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            AVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSF
Sbjct: 1365 AVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1424

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPS 1435
            EETVD+L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S
Sbjct: 1425 EETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGS 1484

Query: 1436 YMEG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
             M G     +  G TP+ +P   TP+ +   +P Y FSP+  +S +T        GG +F
Sbjct: 1485 SMLGGAAIFMGGGSTPSMTP-PMTPWVN-CHTPRY-FSPSGHVSAMTP-------GGPSF 1534

Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS--PGYSPTSPGYSPTSPTYSPSSPGYS 1548
            SP+++   S  SP +SP+ PG SP+SPG S +   P     SP YSPTSP Y+ SSPG +
Sbjct: 1535 SPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGA 1594

Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS- 1607
              SP YSP+SP+YSPTSP Y+ TSP Y+ T+P+++P S  YSP+S  YSPTSP YSPTS 
Sbjct: 1595 --SPNYSPSSPNYSPTSPLYASTSPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTSN 1652

Query: 1608 ----PAYSPT-SPAYSPTSP----------------------------------AYSPTS 1628
                P+++ + S  YSP +                                    YSPTS
Sbjct: 1653 FQSSPSFAGSGSNMYSPGNAYSPSSSNYSPNSPSYSPMSPSYSPSSPSYSPTSPCYSPTS 1712

Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS--------------------- 1667
            PSYSPTSP+Y+P +PSYSPTSP+YS  SP YSP SPAYS                     
Sbjct: 1713 PSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1771

Query: 1668 --PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
              P SP Y+P SP YSP SP YSPTSP Y+P S ++SPS  YSP+       S YS TSP
Sbjct: 1772 GSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSATSP 1825

Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPGY 1783
             YSP  S YSP+S  YSP+SPTY+P++         +YSP+SP YSP+A   YSP++P Y
Sbjct: 1826 RYSPNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPTSPAY 1877

Query: 1784 SPSS 1787
            SPSS
Sbjct: 1878 SPSS 1881



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 17/88 (19%)

Query: 1707 YSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSP 1765
            Y+ SSP    ASP YSP+SPNYSPTS  Y+ TSP Y+ ++P ++P               
Sbjct: 1586 YTASSP--GGASPNYSPSSPNYSPTSPLYASTSPRYASTTPNFNPQ-------------- 1629

Query: 1766 SSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
            S+     S+GYSP++P YSP+S  Q +P
Sbjct: 1630 STGYSPSSSGYSPTSPVYSPTSNFQSSP 1657


>gi|188532143|gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum demersum]
          Length = 1010

 Score = 1901 bits (4925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 891/1010 (88%), Positives = 951/1010 (94%), Gaps = 10/1010 (0%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPMFHIGF+KTV ++MR +CFNCSKILADE+DHKFKQA+KI+NPK+RL+K++DAC
Sbjct: 1    HLELAKPMFHIGFLKTVCNLMRCICFNCSKILADEEDHKFKQAVKIKNPKHRLRKVMDAC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            K+K KCEGGDE+DV GQD +EP KK +GGCG+QQPK+ +EGMK+IAE+KA +K++D+Q+Q
Sbjct: 61   KSKQKCEGGDEMDVQGQDEDEPXKKKRGGCGSQQPKIAVEGMKIIAEFKAPKKRSDEQDQ 120

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP----------I 251
            LPEPVERKQ L+AERVL +LKRISDEDC LLG NPKYARPDWMILQVLP          +
Sbjct: 121  LPEPVERKQQLSAERVLSILKRISDEDCVLLGFNPKYARPDWMILQVLPIPPPPVRPSVM 180

Query: 252  PPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 311
                 R  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELP Q
Sbjct: 181  MDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPXQ 240

Query: 312  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 371
            PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPWSIA
Sbjct: 241  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIA 300

Query: 372  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL 431
            LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLEL
Sbjct: 301  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLEL 360

Query: 432  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 491
            GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN
Sbjct: 361  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 420

Query: 492  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 551
            MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN
Sbjct: 421  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 480

Query: 552  ILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDT 611
            ILMWWEDFDGK+P PTILKPRPLWTGKQVFNLIIPKQINL RT+AWH++ + G +T GDT
Sbjct: 481  ILMWWEDFDGKIPAPTILKPRPLWTGKQVFNLIIPKQINLIRTSAWHSEAETGFITPGDT 540

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
             VRIE+GELL+GTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FS
Sbjct: 541  QVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFS 600

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDTIADA TME IN+TISKAKN VK LIK AQ+K LE EPGRTMMESFEN+VNQVLN
Sbjct: 601  IGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLN 660

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+DRT
Sbjct: 661  KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIDRT 720

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK
Sbjct: 721  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 780

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK EFD  FR+E D 
Sbjct: 781  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEFDN 840

Query: 912  ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
             NWNP+YML E+++DLKTI+E R+VFDAEVQKLEADRYQL TEIAT+GD+SWP+PVNLKR
Sbjct: 841  ANWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKR 900

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            LIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVPG+D LS+EAQKNATLFFNILL
Sbjct: 901  LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILL 960

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            R+TFASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 961  RTTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1010


>gi|188532157|gb|ACD63090.1| RNA polymerase II largest subunit [Pisum sativum]
          Length = 1010

 Score = 1900 bits (4921), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 891/1010 (88%), Positives = 957/1010 (94%), Gaps = 10/1010 (0%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            +LELAKPMFHIGF+KTVLSIMR VCFNCSKILADE DHKFKQAL+I+NPKNRL+KILDAC
Sbjct: 1    YLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEQDHKFKQALRIKNPKNRLRKILDAC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            KNKTKCEGGD++D+PGQD EEP+KK++GGCGAQQPK+TIEGMK+ AEYKAQRKK+DDQ+Q
Sbjct: 61   KNKTKCEGGDDLDLPGQDTEEPVKKSRGGCGAQQPKITIEGMKINAEYKAQRKKSDDQDQ 120

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP----------I 251
            LPEPVERKQTL+AERVL VLKRISDEDCQLLGLNPKYARPDW+ILQVLP          +
Sbjct: 121  LPEPVERKQTLSAERVLSVLKRISDEDCQLLGLNPKYARPDWLILQVLPIPPPPVRPSVM 180

Query: 252  PPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 311
                 R  DDLTHQLAMIIRHNENL+RQERNG+PAHIISEFAQLLQFHIATYFDNELPG 
Sbjct: 181  MDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIISEFAQLLQFHIATYFDNELPGL 240

Query: 312  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 371
            PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW+IA
Sbjct: 241  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWTIA 300

Query: 372  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL 431
            LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL
Sbjct: 301  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL 360

Query: 432  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 491
            GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN
Sbjct: 361  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 420

Query: 492  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 551
            MHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQD+LLGCRKITKRDTFI KDVFMN
Sbjct: 421  MHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFIAKDVFMN 480

Query: 552  ILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDT 611
            ILMWWEDFDGKVP PTILKP PLWTGKQVFNLIIPKQINL R ++WH + ++G +T GDT
Sbjct: 481  ILMWWEDFDGKVPAPTILKPEPLWTGKQVFNLIIPKQINLIRYSSWHNEAERGPITPGDT 540

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
            +VRIEKGELL+GTLCKKTLGT TGSLIHV+WEEVGPDAARKFLGHTQWLVNYWLLQNAFS
Sbjct: 541  MVRIEKGELLTGTLCKKTLGTGTGSLIHVVWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 600

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDTIADA TMETIN TIS+AK+ VK LI++AQ+K LE EPGRTMM+SFEN+VNQ LN
Sbjct: 601  IGIGDTIADASTMETINQTISQAKDKVKQLIREAQEKKLEAEPGRTMMDSFENRVNQTLN 660

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARD+AG+SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+DRT
Sbjct: 661  KARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRT 720

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK
Sbjct: 721  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 780

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q LDSLKMKK++FD+AFR+E D+
Sbjct: 781  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKTDFDRAFRYEFDD 840

Query: 912  ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
            ENW P YML+E ++DLKTI+E R+VF+AEVQKL+ADR+QLATEIAT+GDSS PLPVNLKR
Sbjct: 841  ENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLDADRFQLATEIATTGDSSLPLPVNLKR 900

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            LIWNAQKTFKVD RRPSDMHPME+VEA+DKLQERL+VVPG+D LS EAQKNATL FNILL
Sbjct: 901  LIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLRVVPGDDLLSQEAQKNATLLFNILL 960

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            RSTFASKRVL+E+RL+REAFEWV+GEIESRFLQSLVA GEMIGCVAAQSI
Sbjct: 961  RSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASGEMIGCVAAQSI 1010


>gi|308229952|gb|ADO24383.1| RNA polymerase II large subunit, partial [Drosophila guttifera]
          Length = 1872

 Score = 1898 bits (4916), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1042/1920 (54%), Positives = 1322/1920 (68%), Gaps = 193/1920 (10%)

Query: 10   AEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCE 67
            A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +C+
Sbjct: 2    APLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQ 61

Query: 68   TCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL-- 125
            TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+ +  
Sbjct: 62   TCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVVK 121

Query: 126  KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIEGM 183
                P+ RL  + D CK KT CEGG+++D+   + + +P KK   GGCG  QP +   G+
Sbjct: 122  SKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIRRTGL 181

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
             + AE+K     N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARPDW
Sbjct: 182  DLTAEWK---HVNEDSQ------EKKIIVSAERVWEILKHITDEECFILGMDPKYARPDW 232

Query: 244  MILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            MI+ VLP+PP  VRP+          DDLTH+LA II+ N  LR+ E +GA AH+I E  
Sbjct: 233  MIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENI 292

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
            ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVI
Sbjct: 293  KMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 352

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            TPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD+G
Sbjct: 353  TPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRDNG 409

Query: 414  QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
            +R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STFR+
Sbjct: 410  ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRM 469

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL  
Sbjct: 470  NLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTA 529

Query: 534  CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
             RK+TKRD FI ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N+ R
Sbjct: 530  VRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIR 589

Query: 594  TAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
            T + H D  D G    ++ GDT V +E GEL++G LCKKTLGTS GSL+H+ + E+G D 
Sbjct: 590  THSTHPDEEDDGPYKWISPGDTKVMVEHGELITGILCKKTLGTSAGSLLHICFLELGHDI 649

Query: 650  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
            A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +  
Sbjct: 650  AGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYTEIQTAIKKAKDDVINVIQKAHNME 709

Query: 710  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
            LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INISQ+
Sbjct: 710  LEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQV 769

Query: 770  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
             ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGR
Sbjct: 770  IACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 829

Query: 830  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
            EGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E Q
Sbjct: 830  EGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQ 889

Query: 890  TLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDA------EVQ 942
             L ++K+    F+K F+F+     W N  YM + + DD+  IKE+ D  DA      E +
Sbjct: 890  NLPTVKLSNKVFEKRFKFD-----WSNERYMRKVFTDDV--IKEVTDSSDAIQELEGEWE 942

Query: 943  KLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            KL  DR  L T I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V+  V  L
Sbjct: 943  KLVEDRDNLRT-IFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVKGL 1001

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
             ER  +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF
Sbjct: 1002 LERCVIVTGHDRISKQANENATLLFRCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRF 1061

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K 
Sbjct: 1062 QQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKA 1121

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PSL+VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  Y
Sbjct: 1122 PSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVY 1181

Query: 1183 YEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADK 1242
            YEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNADK
Sbjct: 1182 YEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1239

Query: 1243 LILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV------------- 1286
            L+LRIRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+             
Sbjct: 1240 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1299

Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                       +++ V+   DVD +RT+SN + EI +VLGIEAV
Sbjct: 1300 DSKKRIVITDTGEFKAIGEWLLETDGTSMMKVLSERDVDPQRTSSNDICEIFQVLGIEAV 1359

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEE
Sbjct: 1360 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1419

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYM 1437
            TVD+L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S M
Sbjct: 1420 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRYGIEIPNSLGSSM 1479

Query: 1438 EG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSP 1492
             G     +  G TP+ +P   TP+ +   +P Y FSP   +S +T        GG +FSP
Sbjct: 1480 LGGAAMFIGGGSTPSMTP-PMTPWVN-CHTPRY-FSPPGHVSAMTP-------GGPSFSP 1529

Query: 1493 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS--PGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
            +++   S  SP +SP+ PG SP+SPG S +   P     SP YSPTSP Y+ SSPG +  
Sbjct: 1530 SAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGA-- 1587

Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--- 1607
            SP YSP+SP+YSPTSP Y+ TSP Y+  +P+++  S  YSP+S  YSPTSP YSPTS   
Sbjct: 1588 SPNYSPSSPNYSPTSPMYAATSPRYASATPNFNQQSTGYSPSSSGYSPTSPVYSPTSNFQ 1647

Query: 1608 --PAYSPT-SPAYSPTSP----------------------------------AYSPTSPS 1630
              P+++ + S  YSP +                                    YSPTSPS
Sbjct: 1648 SSPSFAGSGSNMYSPGNAYSPSSSNYSPNSPSYSPMSPSYSPSSPSYSPTSPCYSPTSPS 1707

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS----------------------- 1667
            YSPTSP+Y+P +PSYSPTSP+YS  SP YSP SPAYS                       
Sbjct: 1708 YSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGS 1766

Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY 1727
            P SP Y+P SP YSP SP YSPTSP Y+P S ++SPS  YSP+       S YS TSP Y
Sbjct: 1767 PGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSATSPRY 1820

Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPGYSP 1785
            SP  S YSP S  YSP+SPTY+P++         +YSP+SP YSP+A   YSP++P YSP
Sbjct: 1821 SPNISIYSPGSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPTSPAYSP 1872



 Score = 40.4 bits (93), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 18/88 (20%)

Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQ---------- 1769
            Y+ +SP  +  S +YSP+SP+YSP+SP Y+ +SP  A    P+++  S            
Sbjct: 1579 YTASSPGGA--SPNYSPSSPNYSPTSPMYAATSPRYA-SATPNFNQQSTGYSPSSSGYSP 1635

Query: 1770 ----YSPSAGYSPSAPGYSPSSTSQYTP 1793
                YSP++ +  S+P ++ S ++ Y+P
Sbjct: 1636 TSPVYSPTSNFQ-SSPSFAGSGSNMYSP 1662


>gi|158332|gb|AAA28868.1| RNA polymerase II [Drosophila melanogaster]
          Length = 1896

 Score = 1897 bits (4915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1025/1923 (53%), Positives = 1308/1923 (68%), Gaps = 207/1923 (10%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIE 181
            +K R  P+ RL  + D CK KT CEGG+++D+  ++ + +P KK   GGCG  QP +   
Sbjct: 127  MKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRT 186

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ + AE+K Q   N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARP
Sbjct: 187  GLDLTAEWKHQ---NEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYARP 237

Query: 242  DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            DWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  LR+ E +GA AH+I E
Sbjct: 238  DWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQE 297

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 298  NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD
Sbjct: 358  VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRD 414

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 415  NGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 475  RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTL 534

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
               RK+TKRD FI ++  MN+LM+   +D K+PQP ILKPRPLWTGKQ+F+LIIP  +N+
Sbjct: 535  TAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNM 594

Query: 592  FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             RT + H D  D+G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G 
Sbjct: 595  IRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGH 654

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            D A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +
Sbjct: 655  DIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHN 714

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LEP PG T+ ++FENKVN++LN A D+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 715  MELEPTPGNTLRQTFENKVNRILNDAHDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 774

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 775  QVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E
Sbjct: 835  GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVE 894

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
             Q + ++K+    F+K F+F+     W N   M + + DD+  IKE+ D  +A +Q+LEA
Sbjct: 895  FQNMPTVKLSNKSFEKRFKFD-----WSNERLMKKVFTDDV--IKEMTDSSEA-IQELEA 946

Query: 947  DRYQLAT------EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            +  +L +      +I  +G+S   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V 
Sbjct: 947  EWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVK 1006

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L ER  +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW++GEIE+
Sbjct: 1007 TLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIET 1066

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RF Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK 
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 1126

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            K PSL+VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV 
Sbjct: 1127 KAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
             YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNA
Sbjct: 1187 VYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNA 1244

Query: 1241 DKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------- 1286
            DKL+LRIRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+           
Sbjct: 1245 DKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1304

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                         +++ V+   DVD  RT+SN + EI +VLGIE
Sbjct: 1305 QTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIE 1364

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            AVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSF
Sbjct: 1365 AVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1424

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPS 1435
            EETVD+L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L +
Sbjct: 1425 EETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGN 1484

Query: 1436 YMEG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
             M G     +  G TP+ +P           +P Y FSP   +S +T        GG +F
Sbjct: 1485 SMLGGAAMFIGGGSTPSMTPPELDSAWANCNTPRY-FSPPGHVSAMTP-------GGPSF 1536

Query: 1491 SPTSSPGYSPSSPGYSPSSP------------------------------GYSPTSPGYS 1520
            SP+++   S  SP +SP+ P                               Y+ +SPG +
Sbjct: 1537 SPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGA 1596

Query: 1521 PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT-- 1578
              SP YSP+SP YSPTSP Y+  SP Y+ T+P ++P S  YSP+S  YSPTSP YSPT  
Sbjct: 1597 --SPNYSPSSPNYSPTSPLYA--SPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQ 1652

Query: 1579 ---SPSYSPT-SPSYSPTSP----------------------------------SYSPTS 1600
               SPS++ + S  YSP +                                    YSPTS
Sbjct: 1653 FQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTS 1712

Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY--------------- 1645
            PSYSPTSP Y+P +P+YSPTSP YS  SP YSP SP+YS T   Y               
Sbjct: 1713 PSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1771

Query: 1646 -SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP------SYSPTSPTYSPTSPSYNPQS 1698
             SP SP Y+P SP YSP SP YSPTSP YSP+SP       YSPT  TYS TSP Y+P  
Sbjct: 1772 GSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNM 1831

Query: 1699 AKYSPS-LAYSPSSPRLSP-ASPYSPTSPNYSPTS-SSYSPTSPSYSPSSPTYSPSSPYN 1755
            + YSPS   YSP+SP  +P A  YSPTSP YSPT+ S YSPTSP+YSPSSPT+  S    
Sbjct: 1832 SIYSPSSTKYSPTSPTYTPTARNYSPTSPMYSPTAPSHYSPTSPAYSPSSPTFEESEDVR 1891

Query: 1756 AGG 1758
             GG
Sbjct: 1892 KGG 1894



 Score = 77.4 bits (189), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 102/182 (56%), Gaps = 51/182 (28%)

Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
            +Y+ +SP  +  SP+YSP+SP+YSPTSP Y+  SP Y+ T+P+++P S  YSP+S  Y+P
Sbjct: 1587 NYTASSPGGA--SPNYSPSSPNYSPTSPLYA--SPRYASTTPNFNPQSTGYSPSSSGYSP 1642

Query: 1697 QSAKYSPSLAYSPSSPRL--SPASPYSPTSPN---------------------------- 1726
             S  YSP++ +  SSP    S ++ YSP +                              
Sbjct: 1643 TSPVYSPTVQFQ-SSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSY 1701

Query: 1727 ------YSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPS 1779
                  YSPTS SYSPTSP+Y+P +P+YSP+SP        +YS +SPQYSP++  YS +
Sbjct: 1702 SPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSP--------NYS-ASPQYSPASPAYSQT 1752

Query: 1780 AP 1781
              
Sbjct: 1753 GV 1754



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 77/174 (44%), Gaps = 73/174 (41%)

Query: 1673 YSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP------------- 1719
            Y+ +SP  +  SP YSP+SP+Y+P S  Y+ S  Y+ ++P  +P S              
Sbjct: 1588 YTASSPGGA--SPNYSPSSPNYSPTSPLYA-SPRYASTTPNFNPQSTGYSPSSSGYSPTS 1644

Query: 1720 --YSPT-----SPNYSPTSSS--------------------------------------- 1733
              YSPT     SP+++ + S+                                       
Sbjct: 1645 PVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPT 1704

Query: 1734 ---YSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYS 1784
               YSPTSPSYSP+SP Y+P +        P YSP+SP YS S  YSP++P YS
Sbjct: 1705 SPCYSPTSPSYSPTSPNYTPVT--------PSYSPTSPNYSASPQYSPASPAYS 1750


>gi|308229954|gb|ADO24384.1| RNA polymerase II large subunit, partial [Drosophila nigromaculata]
          Length = 1872

 Score = 1896 bits (4912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1040/1920 (54%), Positives = 1325/1920 (69%), Gaps = 193/1920 (10%)

Query: 10   AEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCE 67
            A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +C+
Sbjct: 2    APLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQ 61

Query: 68   TCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-ALK 126
            TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  +K
Sbjct: 62   TCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMK 121

Query: 127  IR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIEGM 183
             +  P+ RL  + D CK KT CEGG+++D+   + + +P KK   GGCG  QP +   G+
Sbjct: 122  SKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIRRTGL 181

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
             + AE+K     N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARPDW
Sbjct: 182  DLTAEWK---HVNEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYARPDW 232

Query: 244  MILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            MI+ VLP+PP  VRP+          DDLTH+LA II+ N  LR+ E +GA AH+I E  
Sbjct: 233  MIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENI 292

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
            ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVI
Sbjct: 293  KMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 352

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            TPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD+G
Sbjct: 353  TPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRDNG 409

Query: 414  QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
            +R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STFR+
Sbjct: 410  ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRM 469

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL  
Sbjct: 470  NLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTA 529

Query: 534  CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
             RK+TKRD FI ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N+ R
Sbjct: 530  VRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIR 589

Query: 594  TAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
            T + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+G D 
Sbjct: 590  THSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDI 649

Query: 650  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
            A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +  
Sbjct: 650  AGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYTEIQTAIKKAKDDVINVIQKAHNME 709

Query: 710  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
            LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INISQ+
Sbjct: 710  LEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQV 769

Query: 770  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
             ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGR
Sbjct: 770  IACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 829

Query: 830  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
            EGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E Q
Sbjct: 830  EGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQ 889

Query: 890  TLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
             + ++K+    F+K F+F+     W N  YM + + DD+  IKE+ D  DA +Q+LE + 
Sbjct: 890  NMPTVKLSNKVFEKRFKFD-----WSNERYMRKVFTDDV--IKEMTDSSDA-IQELEGEW 941

Query: 949  YQLATE------IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
             +L T+      I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V+  V +L
Sbjct: 942  DKLVTDRDNLRTIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVQEL 1001

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
             ER  +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF
Sbjct: 1002 LERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRF 1061

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             Q+   PGEM+G +AAQS+GEPATQMTLNT H+AGVS+KNVTLGVPRL+EIIN++KK K 
Sbjct: 1062 QQAQANPGEMVGALAAQSLGEPATQMTLNTSHFAGVSSKNVTLGVPRLKEIINISKKPKA 1121

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PSL+VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  Y
Sbjct: 1122 PSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVY 1181

Query: 1183 YEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADK 1242
            YEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNADK
Sbjct: 1182 YEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1239

Query: 1243 LILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV------------- 1286
            L+LRIRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+             
Sbjct: 1240 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1299

Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                       +++ V+   DVD  RT+SN + EI +VLGIEAV
Sbjct: 1300 DSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1359

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEE
Sbjct: 1360 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1419

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYM 1437
            TVD+L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S M
Sbjct: 1420 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSM 1479

Query: 1438 EG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSP 1492
             G     +  G TP+ +P   TP+ +   +P Y FSP   +S +T        GG +FSP
Sbjct: 1480 LGGAAMFIGGGSTPSMTP-PMTPWVN-CHTPRY-FSPPGHVSAMTP-------GGPSFSP 1529

Query: 1493 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS--PGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
            +++   S  SP +SP+ PG SP+SPG S +   P     SP YSPTSP Y+ SSPG +  
Sbjct: 1530 SAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGA-- 1587

Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--- 1607
            SP YSP+SP+YSPTSP Y+ TSP Y+  +P+++P S  YSP+S  YSPTSP YSPTS   
Sbjct: 1588 SPNYSPSSPNYSPTSPMYAATSPRYASATPNFNPQSTGYSPSSSGYSPTSPVYSPTSNFQ 1647

Query: 1608 --PAYSPT-SPAYSPTSP----------------------------------AYSPTSPS 1630
              P+++ + S  YSP +                                    YSPTSPS
Sbjct: 1648 SSPSFAGSGSNMYSPGNAYSPSSSNYSPNSPSYSPMSPSYSPSSPSYSPTSPCYSPTSPS 1707

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS----------------------- 1667
            YSPTSP+Y+P +PSYSPTSP+YS  SP YSP SPAYS                       
Sbjct: 1708 YSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGS 1766

Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY 1727
            P SP Y+P SP YSP SP YSPTSP Y+P S ++SPS  YSP+       S YS TSP Y
Sbjct: 1767 PGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSATSPRY 1820

Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPGYSP 1785
            SP  S YSP S  YSP+SPTY+P++         +YSP+SP YSP+A   YSP++P YSP
Sbjct: 1821 SPNISIYSPGSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPTSPAYSP 1872



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 18/88 (20%)

Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQ---------- 1769
            Y+ +SP  +  S +YSP+SP+YSP+SP Y+ +SP  A    P+++P S            
Sbjct: 1579 YTASSPGGA--SPNYSPSSPNYSPTSPMYAATSPRYA-SATPNFNPQSTGYSPSSSGYSP 1635

Query: 1770 ----YSPSAGYSPSAPGYSPSSTSQYTP 1793
                YSP++ +  S+P ++ S ++ Y+P
Sbjct: 1636 TSPVYSPTSNFQ-SSPSFAGSGSNMYSP 1662


>gi|195399163|ref|XP_002058190.1| GJ15949 [Drosophila virilis]
 gi|194150614|gb|EDW66298.1| GJ15949 [Drosophila virilis]
          Length = 1889

 Score = 1896 bits (4911), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1039/1924 (54%), Positives = 1325/1924 (68%), Gaps = 193/1924 (10%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++L KP+FHIGF+   + I+R VCF CSK+L    + K K+ +
Sbjct: 67   CQTCAGNMTECPGHFGHIDLVKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 126  --KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIE 181
                  P+ RL  + D CK KT CEGG+++D+   + + +P KK   GGCG  QP +   
Sbjct: 127  VKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIRRT 186

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ + AE+K     N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARP
Sbjct: 187  GLDLTAEWK---HVNEDSQ------EKKIIVSAERVWEILKHITDEECFILGMDPKYARP 237

Query: 242  DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            DWMI+ VLP+PP  VRP+          DDLTH+LA II+ N  LR+ E +GA AH+I E
Sbjct: 238  DWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQE 297

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 298  NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD
Sbjct: 358  VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRD 414

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 415  NGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 475  RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTL 534

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
               RK+TKRD FI ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N+
Sbjct: 535  TAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNM 594

Query: 592  FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             R    H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+G 
Sbjct: 595  IRAHETHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGH 654

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            D A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +
Sbjct: 655  DIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHN 714

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 715  MELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 774

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 775  QVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E
Sbjct: 835  GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVE 894

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
             Q + ++K+    F+K F+F+     W N  YM + + DD+  IKE+ D  DA +Q+LE+
Sbjct: 895  FQHMPTVKLSNKVFEKRFKFD-----WSNERYMRRVFTDDV--IKEMTDSSDA-IQELES 946

Query: 947  DRYQLATE------IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            +  +L ++      I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V+  V 
Sbjct: 947  EWDRLVSDRDNLRTIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVK 1006

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L ER  +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+
Sbjct: 1007 GLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RF Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK 
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 1126

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            K PSL+VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV 
Sbjct: 1127 KAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVN 1186

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
             YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNA
Sbjct: 1187 VYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNA 1244

Query: 1241 DKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------- 1286
            DKL+LRIRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+           
Sbjct: 1245 DKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1304

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                         +++ V+   DVD  RT+SN + EI +VLGIE
Sbjct: 1305 QTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIE 1364

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            AVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSF
Sbjct: 1365 AVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1424

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPS 1435
            EETVD+L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S
Sbjct: 1425 EETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGS 1484

Query: 1436 YMEG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
             M G     +  G TP+ +P   TP+ +   +P Y FSP+  +S +T        GG +F
Sbjct: 1485 SMLGGAAIFMGGGSTPSMTP-PMTPWVN-CHTPRY-FSPSGHVSGMTP-------GGPSF 1534

Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP--GYSPTSPGYSPTSPTYSPSSPGYS 1548
            SP+++   S  SP +SP+ PG SP+SPG S +         SP YSPTSP Y+ SSPG +
Sbjct: 1535 SPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPHFSTSPSVSPSYSPTSPNYTASSPGGA 1594

Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS- 1607
              SP YSP+SP+YSPTSP Y+ TS  Y+  +P+++P S  YSP+S  YSPTSP YSPTS 
Sbjct: 1595 --SPNYSPSSPNYSPTSPLYTATSLRYASATPNFNPQSTGYSPSSSGYSPTSPVYSPTSN 1652

Query: 1608 ----PAYSPT-SPAYSPTSP----------------------------------AYSPTS 1628
                P+++ + S  YSP +                                    YSPTS
Sbjct: 1653 FQSSPSFAGSGSNMYSPGNAYSPSSSNYSSNSPSYSPMSPSYSPSSPSYSPTSPCYSPTS 1712

Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS--------------------- 1667
            PSYSPTSP+Y+P +PSYSPTSP+YS  SP YSP SPAYS                     
Sbjct: 1713 PSYSPTSPNYTPATPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1771

Query: 1668 --PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
              P SP Y+P SP YSPTSP YSPTSP Y+P S ++SPS  YSP+       S YS TSP
Sbjct: 1772 GSPGSPQYTPGSPQYSPTSPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSATSP 1825

Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPGY 1783
             YSP  S YSP+S  YSP+SPTY+P++         +YSP+SP YSP+A   YSP++P Y
Sbjct: 1826 RYSPNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPTSPAY 1877

Query: 1784 SPSS 1787
            SPSS
Sbjct: 1878 SPSS 1881


>gi|188532147|gb|ACD63085.1| RNA polymerase II largest subunit [Illicium parviflorum]
          Length = 1013

 Score = 1893 bits (4904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 896/1013 (88%), Positives = 950/1013 (93%), Gaps = 13/1013 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPMFHIGF+KTVLSIMRSVCFNCS ILAD++DH+FKQALKIRNPK+RL+K+LD C
Sbjct: 1    HLELAKPMFHIGFLKTVLSIMRSVCFNCSHILADQEDHRFKQALKIRNPKHRLRKVLDCC 60

Query: 142  KNKTKCEGGDEIDV-PGQDGEEPLKKN-KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            K+K KCEGGD+ID    QD E+ +KK   GGCGAQQPK+T+EGMKMIAE+K  RKK+D+Q
Sbjct: 61   KSKQKCEGGDDIDEDQAQDSEDGVKKKGHGGCGAQQPKITVEGMKMIAEFKQTRKKSDEQ 120

Query: 200  EQ-LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP-------- 250
            EQ LPEP ERKQ L+AERVL +LKRISDEDC LLGLNPKYARPDWMILQVLP        
Sbjct: 121  EQMLPEPAERKQQLSAERVLSILKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRP 180

Query: 251  --IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
              +     R  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL
Sbjct: 181  SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 240

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
            PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPW
Sbjct: 241  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPW 300

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHH
Sbjct: 301  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHH 360

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            LELGYKVERHLNDGD+VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD
Sbjct: 361  LELGYKVERHLNDGDYVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 420

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV
Sbjct: 421  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 480

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
            FMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQINL RT+AWH++++ G +T 
Sbjct: 481  FMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRTSAWHSESETGFITP 540

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            GDT VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN
Sbjct: 541  GDTHVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 600

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDTIADA TME IN+TISKAKN VK LIK AQ+K LE EPGRTMMESFEN+VNQ
Sbjct: 601  GFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQ 660

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
            VLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+
Sbjct: 661  VLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFI 720

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
            DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR
Sbjct: 721  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 780

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK EF+  FR+E
Sbjct: 781  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFENVFRYE 840

Query: 909  MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
            +D +NWNP+YML E++ DLKTI+E R+VFDAEVQKLEADR+QL TEIAT+GD+SWP+PVN
Sbjct: 841  IDNDNWNPSYMLPEHVKDLKTIREFRNVFDAEVQKLEADRFQLGTEIATTGDNSWPMPVN 900

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            LKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVPG+D LS+EAQKNATLFFN
Sbjct: 901  LKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFN 960

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            ILLRSTFASKRVLKE+RLTREAFEWV+GEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 961  ILLRSTFASKRVLKEYRLTREAFEWVVGEIESRFLQSLVAPGEMIGCVAAQSI 1013


>gi|9587179|gb|AAF89193.1|AF272643_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587181|gb|AAF89194.1|AF272644_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587183|gb|AAF89195.1|AF272645_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587185|gb|AAF89196.1|AF272646_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587187|gb|AAF89197.1|AF272647_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587189|gb|AAF89198.1|AF272648_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587191|gb|AAF89199.1|AF272649_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587193|gb|AAF89200.1|AF272650_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587195|gb|AAF89201.1|AF272651_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587197|gb|AAF89202.1|AF272652_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|9587199|gb|AAF89203.1|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura]
 gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase II complex [Drosophila
            subobscura]
          Length = 1889

 Score = 1893 bits (4904), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1023/1935 (52%), Positives = 1316/1935 (68%), Gaps = 215/1935 (11%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+ +
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 126  --KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP---LKKNKGGCGAQQPKLTI 180
                  P+ RL  + D CK KT CEGG+++D+  +D ++P    K   GGCG  QP +  
Sbjct: 127  VKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLT-KDNQQPDPNKKPGHGGCGHYQPSIRR 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ + AE+K     N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYAR
Sbjct: 186  TGLDLSAEWK---HPNEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYAR 236

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  LR+ E +GA AH+I 
Sbjct: 237  PDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQ 296

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 297  ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+R
Sbjct: 357  TVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVR 413

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 414  DNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST 473

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 474  FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDT 533

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD FI ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N
Sbjct: 534  LTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVN 593

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D  D G    ++ GDT V +E G+L+ G LCKKTLGTS GSL+H+ + E+G
Sbjct: 594  MIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELG 653

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             + A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A 
Sbjct: 654  HEIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAH 713

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 714  NMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 773

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELV 893

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            E Q + ++K+    F+K F+F+     W N  YM + + D++  IKE+ D  +A +Q LE
Sbjct: 894  EFQNMPTVKLSNKAFEKRFKFD-----WSNERYMRKVFTDEV--IKEMTDSSEA-IQDLE 945

Query: 946  ADRYQLATE------IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
            ++   L  +      I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V++ V
Sbjct: 946  SEWDHLMHDRDNLRVIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGV 1005

Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
              L ER  +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE
Sbjct: 1006 KTLLERCVIVTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIE 1065

Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
            +RF Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK
Sbjct: 1066 TRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKK 1125

Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
             K PSL+VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV
Sbjct: 1126 PKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFV 1185

Query: 1180 KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
              YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDN
Sbjct: 1186 NVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDN 1243

Query: 1240 ADKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV---------- 1286
            ADKL+LRIRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+          
Sbjct: 1244 ADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHL 1303

Query: 1287 ------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGI 1316
                                          +++ V+   DVD  RT+SN + EI +VLGI
Sbjct: 1304 PQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGI 1363

Query: 1317 EAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCS 1376
            EAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCS
Sbjct: 1364 EAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCS 1423

Query: 1377 FEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLP 1434
            FEETVD+L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L 
Sbjct: 1424 FEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLG 1483

Query: 1435 SYMEG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMA 1489
            S M G     +  G TP+ +P   TP+ +   +P Y FSP   +S +T        GG +
Sbjct: 1484 SSMLGGTAMFIGGGSTPSMTP-PMTPWVN-CNTPRY-FSPPGHVSAMTP-------GGPS 1533

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS----------------PGYSPTSPGY 1533
            FSP+++   S  SP +SP+ PG SP+SP  S +                 P Y+ +SPG 
Sbjct: 1534 FSPSAASDASGMSPSWSPAHPGSSPSSPAPSMSPFYPASPSVSPSYSPTSPNYTASSPG- 1592

Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
                     +SP YSP+SP YSPTSP Y+  SP Y+ T+P+++P S  YSP++  YSPTS
Sbjct: 1593 --------GASPNYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGYSPSASGYSPTS 1644

Query: 1594 PSYSPTSPSYSPTSPAYSPT-SPAYSPTSPAYSPTS------------------------ 1628
            P YSPTS    P+SP+++ + S  YSP + AYSP+S                        
Sbjct: 1645 PVYSPTS--NFPSSPSFAGSGSNMYSPGN-AYSPSSTNYSPNSPSYSPTSPSYSPSSPSY 1701

Query: 1629 ------------------PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY---- 1666
                              P+Y+P +PSYSPTSP+YS  SP YSP SP+YS T   Y    
Sbjct: 1702 SPTSPCYSPSSPSYSPTSPNYTPATPSYSPTSPNYS-ASPHYSPASPAYSQTGAKYSPTS 1760

Query: 1667 ------------SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
                        SP SP Y+P SP YSP SP YSPTSP Y+P S ++SPS  YSP+    
Sbjct: 1761 PTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT---- 1816

Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
               S YS TSP YSP  S YSP+S  YSP+SPTY+P++         +YSP+SP YSP+A
Sbjct: 1817 --GSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTA 1866

Query: 1775 --GYSPSAPGYSPSS 1787
               YSP++P YSPSS
Sbjct: 1867 PSHYSPTSPAYSPSS 1881



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 13/101 (12%)

Query: 1707 YSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSS----PYNAGGGNP 1761
            Y+ SSP    ASP YSP+SPNYSPTS  Y+  SP Y+ ++P ++P S    P  +G    
Sbjct: 1586 YTASSP--GGASPNYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGYSPSASG---- 1639

Query: 1762 DYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTT 1802
             YSP+SP YSP++ + PS+P ++ S ++ Y+P      S+T
Sbjct: 1640 -YSPTSPVYSPTSNF-PSSPSFAGSGSNMYSPGNAYSPSST 1678


>gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase II complex [Drosophila
            madeirensis]
          Length = 1889

 Score = 1893 bits (4903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1018/1928 (52%), Positives = 1306/1928 (67%), Gaps = 201/1928 (10%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+ +
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 126  --KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP---LKKNKGGCGAQQPKLTI 180
                  P+ RL  + D CK KT CEGG+++D+  +D ++P    K   GGCG  QP +  
Sbjct: 127  VKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLT-KDNQQPDPNKKPGHGGCGHYQPSIRR 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ + AE+K     N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYAR
Sbjct: 186  TGLDLSAEWK---HPNEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYAR 236

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  LR+ E +GA AH+I 
Sbjct: 237  PDWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQ 296

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 297  ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+R
Sbjct: 357  TVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVR 413

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 414  DNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST 473

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 474  FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDT 533

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD FI ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N
Sbjct: 534  LTAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVN 593

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D  D G    ++ GDT V +E G+L+ G LCKKTLGTS GSL+H+ + E+G
Sbjct: 594  MIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELG 653

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             + A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A 
Sbjct: 654  HEIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAH 713

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 714  NMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 773

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELV 893

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E Q + ++K+    F+K F+F+   E +       E I ++    E     ++E   L  
Sbjct: 894  EFQNMPTVKLSNKAFEKRFKFDWSNERYMRKVFTDEVIKEITDSSEAIQDLESEWDNLMH 953

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L   I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V++ V  L ER 
Sbjct: 954  DRDNLRV-IFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERC 1012

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+ 
Sbjct: 1013 VIVTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQ 1072

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
              PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+
Sbjct: 1073 ANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 1132

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMP
Sbjct: 1133 VFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMP 1192

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNADKL+LR
Sbjct: 1193 DFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLR 1250

Query: 1247 IRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------------- 1286
            IRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+                 
Sbjct: 1251 IRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKK 1310

Query: 1287 -----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
                                   +++ V+   DVD  RT+SN + EI +VLGIEAVR+++
Sbjct: 1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPVRTSSNDICEIFQVLGIEAVRKSV 1370

Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
              E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+
Sbjct: 1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430

Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYMEG-- 1439
            L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S M G  
Sbjct: 1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGT 1490

Query: 1440 ---LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
               +  G TP+ +P   TP+ +   +P Y FSP   +S +T        GG +FSP+++ 
Sbjct: 1491 AMFIGGGSTPSMTP-PMTPWVN-CNTPRY-FSPPGHVSAMTP-------GGPSFSPSAAS 1540

Query: 1497 GYSPSSPGYSPSSPGYSPTSPGYSPTS----------------PGYSPTSPGYSPTSPTY 1540
              S  SP +SP+ PG SP+SP  S +                 P Y+ +SPG        
Sbjct: 1541 DASGMSPSWSPAHPGSSPSSPAPSMSPFYPASPSVSPSYSPTSPNYTASSPG-------- 1592

Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
              +SP YSP+SP YSPTSP Y+  SP Y+ T+P+++P S  YSP++  YSPTSP YSPTS
Sbjct: 1593 -GASPNYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTS 1651

Query: 1601 PSYSPTSPAYSPT-SPAYSPTSPAYSPTS------------------------------- 1628
                P+SP+++ + S  YSP + AYSP+S                               
Sbjct: 1652 --NFPSSPSFAGSGSNMYSPGN-AYSPSSTNYSPNSPSYSPTSPSYSPSSPSYSPTSPCY 1708

Query: 1629 -----------PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY----------- 1666
                       P+Y+P +PSYSPTSP+YS  SP YSP SP+YS T   Y           
Sbjct: 1709 SPSSPSYSPTSPNYTPATPSYSPTSPNYS-ASPHYSPASPAYSQTGAKYSPTSPTYSPPS 1767

Query: 1667 -----SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS 1721
                 SP SP Y+P SP YSP SP YSPTSP Y+P S ++SPS  YSP+       S YS
Sbjct: 1768 PSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYS 1821

Query: 1722 PTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPS 1779
             TSP YSP  S YSP+S  YSP+SPTY+P++         +YSP+SP YSP+A   YSP+
Sbjct: 1822 ATSPRYSPNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPT 1873

Query: 1780 APGYSPSS 1787
            +P YSPSS
Sbjct: 1874 SPAYSPSS 1881



 Score = 63.9 bits (154), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 13/101 (12%)

Query: 1707 YSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSS----PYNAGGGNP 1761
            Y+ SSP    ASP YSP+SPNYSPTS  Y+  SP Y+ ++P ++P S    P  +G    
Sbjct: 1586 YTASSP--GGASPNYSPSSPNYSPTSPLYAAPSPRYASTTPNFNPQSTGYSPSASG---- 1639

Query: 1762 DYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTT 1802
             YSP+SP YSP++ + PS+P ++ S ++ Y+P      S+T
Sbjct: 1640 -YSPTSPVYSPTSNF-PSSPSFAGSGSNMYSPGNAYSPSST 1678


>gi|195355215|ref|XP_002044088.1| GM13065 [Drosophila sechellia]
 gi|194129357|gb|EDW51400.1| GM13065 [Drosophila sechellia]
          Length = 1887

 Score = 1892 bits (4901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1037/1924 (53%), Positives = 1332/1924 (69%), Gaps = 195/1924 (10%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIE 181
            +K R  P+ RL  + D CK KT CEGG+++D+  ++ + +P KK   GGCG  QP +   
Sbjct: 127  MKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRT 186

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ + AE+K Q   N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARP
Sbjct: 187  GLDLTAEWKHQ---NEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYARP 237

Query: 242  DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            DWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  LR+ E +GA AH+I E
Sbjct: 238  DWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQE 297

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 298  NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD
Sbjct: 358  VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRD 414

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 415  NGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 475  RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTL 534

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
               RK+TKRD FI ++  MN+LM+   +D K+PQP ILKPRPLWTGKQ+F+LIIP  +N+
Sbjct: 535  TAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNM 594

Query: 592  FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             RT + H D  D+G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G 
Sbjct: 595  IRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGH 654

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            D A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +
Sbjct: 655  DIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHN 714

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 715  MELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 774

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 775  QVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E
Sbjct: 835  GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVE 894

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
             Q + ++K+    F+K F+F+     W N   M + + DD+  IKE+ D  +A +Q+LEA
Sbjct: 895  FQNMPTVKLSNKSFEKRFKFD-----WSNERLMKKVFTDDV--IKEMTDSSEA-IQELEA 946

Query: 947  DRYQLAT------EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            +  +L +      +I  +G+S   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V 
Sbjct: 947  EWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVK 1006

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L ER  +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW++GEIE+
Sbjct: 1007 TLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIET 1066

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RF Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK 
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 1126

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            K PSL+VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV 
Sbjct: 1127 KAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
             YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNA
Sbjct: 1187 VYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNA 1244

Query: 1241 DKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------- 1286
            DKL+LRIRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+           
Sbjct: 1245 DKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1304

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                         +++ V+   DVD  RT+SN + EI +VLGIE
Sbjct: 1305 QTDSKKRIVITENGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIE 1364

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            AVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSF
Sbjct: 1365 AVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1424

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPS 1435
            EETVD+L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L +
Sbjct: 1425 EETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGN 1484

Query: 1436 YMEG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
             M G     +  G TP+ +P   TP+ +   +P Y FSP   +S +T        GG +F
Sbjct: 1485 SMLGGAAMFIGGGSTPSMTP-PMTPWVN-CNTPRY-FSPPGHVSAMTP-------GGPSF 1534

Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS--PGYSPTSPGYSPTSPTYSPSSPGYS 1548
            SP+++   S  SP +SP+ PG SP+SPG S +   P     SP YSPTSP Y+ SSPG +
Sbjct: 1535 SPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGA 1594

Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-- 1606
              SP YSP+SP+YSPTSP Y+  SP Y+ T+P+++P S  YSP+S  YSPTSP YSPT  
Sbjct: 1595 --SPNYSPSSPNYSPTSPLYA--SPRYASTTPNFNPQSTGYSPSSSGYSPTSPGYSPTAQ 1650

Query: 1607 ---SPAYSPT-SPAYSPTSP----------------------------------AYSPTS 1628
               SP+++ + S  YSP +                                    YSPTS
Sbjct: 1651 FQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTS 1710

Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS--------------------- 1667
            PSYSPTSP+Y+P +PSYSPTSP+YS  SP YSP SPAYS                     
Sbjct: 1711 PSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1769

Query: 1668 --PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
              P SP Y+P SP YSP SP YSPTSP Y+P S ++SPS  YSP+       S YS TSP
Sbjct: 1770 GSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSATSP 1823

Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPGY 1783
             YSP  S YSP+S  YSP+SPTY+P++         +YSP+SP YSP+A   YSP++P Y
Sbjct: 1824 RYSPNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPTSPAY 1875

Query: 1784 SPSS 1787
            SPSS
Sbjct: 1876 SPSS 1879



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 11/72 (15%)

Query: 1730 TSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--------GYSPSAP 1781
            T+SS    SP+YSPSSP YSP+SP  A   +P Y+ ++P ++P +        GYSP++P
Sbjct: 1587 TASSPGGASPNYSPSSPNYSPTSPLYA---SPRYASTTPNFNPQSTGYSPSSSGYSPTSP 1643

Query: 1782 GYSPSSTSQYTP 1793
            GYSP++  Q +P
Sbjct: 1644 GYSPTAQFQSSP 1655


>gi|17530899|ref|NP_511124.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
 gi|14286163|sp|P04052.4|RPB1_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit B1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit
 gi|7292659|gb|AAF48057.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
 gi|269954742|gb|ACZ54678.1| FI12846p [Drosophila melanogaster]
          Length = 1887

 Score = 1892 bits (4900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1037/1924 (53%), Positives = 1332/1924 (69%), Gaps = 195/1924 (10%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIE 181
            +K R  P+ RL  + D CK KT CEGG+++D+  ++ + +P KK   GGCG  QP +   
Sbjct: 127  MKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRT 186

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ + AE+K Q   N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARP
Sbjct: 187  GLDLTAEWKHQ---NEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYARP 237

Query: 242  DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            DWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  LR+ E +GA AH+I E
Sbjct: 238  DWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQE 297

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 298  NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD
Sbjct: 358  VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRD 414

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 415  NGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 475  RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTL 534

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
               RK+TKRD FI ++  MN+LM+   +D K+PQP ILKPRPLWTGKQ+F+LIIP  +N+
Sbjct: 535  TAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNM 594

Query: 592  FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             RT + H D  D+G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G 
Sbjct: 595  IRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGH 654

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            D A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +
Sbjct: 655  DIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHN 714

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 715  MELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 774

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 775  QVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E
Sbjct: 835  GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVE 894

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
             Q + ++K+    F+K F+F+     W N   M + + DD+  IKE+ D  +A +Q+LEA
Sbjct: 895  FQNMPTVKLSNKSFEKRFKFD-----WSNERLMKKVFTDDV--IKEMTDSSEA-IQELEA 946

Query: 947  DRYQLAT------EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            +  +L +      +I  +G+S   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V 
Sbjct: 947  EWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVK 1006

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L ER  +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW++GEIE+
Sbjct: 1007 TLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIET 1066

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RF Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK 
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 1126

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            K PSL+VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV 
Sbjct: 1127 KAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
             YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNA
Sbjct: 1187 VYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNA 1244

Query: 1241 DKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------- 1286
            DKL+LRIRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+           
Sbjct: 1245 DKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1304

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                         +++ V+   DVD  RT+SN + EI +VLGIE
Sbjct: 1305 QTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIE 1364

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            AVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSF
Sbjct: 1365 AVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1424

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPS 1435
            EETVD+L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L +
Sbjct: 1425 EETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGN 1484

Query: 1436 YMEG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
             M G     +  G TP+ +P   TP+ +   +P Y FSP   +S +T        GG +F
Sbjct: 1485 SMLGGAAMFIGGGSTPSMTP-PMTPWAN-CNTPRY-FSPPGHVSAMTP-------GGPSF 1534

Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS--PGYSPTSPGYSPTSPTYSPSSPGYS 1548
            SP+++   S  SP +SP+ PG SP+SPG S +   P     SP YSPTSP Y+ SSPG +
Sbjct: 1535 SPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGA 1594

Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-- 1606
              SP YSP+SP+YSPTSP Y+  SP Y+ T+P+++P S  YSP+S  YSPTSP YSPT  
Sbjct: 1595 --SPNYSPSSPNYSPTSPLYA--SPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQ 1650

Query: 1607 ---SPAYSPT-SPAYSPTSP----------------------------------AYSPTS 1628
               SP+++ + S  YSP +                                    YSPTS
Sbjct: 1651 FQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTS 1710

Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS--------------------- 1667
            PSYSPTSP+Y+P +PSYSPTSP+YS  SP YSP SPAYS                     
Sbjct: 1711 PSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1769

Query: 1668 --PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
              P SP Y+P SP YSP SP YSPTSP Y+P S ++SPS  YSP+       S YS TSP
Sbjct: 1770 GSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSATSP 1823

Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPGY 1783
             YSP  S YSP+S  YSP+SPTY+P++         +YSP+SP YSP+A   YSP++P Y
Sbjct: 1824 RYSPNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPTSPAY 1875

Query: 1784 SPSS 1787
            SPSS
Sbjct: 1876 SPSS 1879


>gi|188532155|gb|ACD63089.1| RNA polymerase II largest subunit [Persea americana]
          Length = 1009

 Score = 1891 bits (4899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 899/1010 (89%), Positives = 944/1010 (93%), Gaps = 11/1010 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPMFHIGFMKTVL+IMR VCFNCSKIL D DD KFKQ+ KIRNPK+RLK++ DAC
Sbjct: 1    HLELAKPMFHIGFMKTVLTIMRCVCFNCSKILVDXDDLKFKQSQKIRNPKHRLKRVFDAC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            KNK KCEGGDE+DV GQ  EEP+KK++GGCGAQQPKLTIEGMKMIAEYK  RKKND +E 
Sbjct: 61   KNKQKCEGGDEMDVQGQGSEEPVKKSRGGCGAQQPKLTIEGMKMIAEYKGSRKKND-EEP 119

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP----------I 251
            LPEPVERKQ L+AERVL VLKRISDEDC LLGLNPKYARPDWMILQVLP          +
Sbjct: 120  LPEPVERKQQLSAERVLSVLKRISDEDCMLLGLNPKYARPDWMILQVLPIPPPPVRPSVM 179

Query: 252  PPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 311
                 R  DDLTHQLAMIIRHNENLR+QERNGAPAHIISEFAQLLQFHIATYFDNELPGQ
Sbjct: 180  MDTSSRSEDDLTHQLAMIIRHNENLRKQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 239

Query: 312  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 371
            PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPWSIA
Sbjct: 240  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIA 299

Query: 372  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL 431
            LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRY KKSSDHHLEL
Sbjct: 300  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYSKKSSDHHLEL 359

Query: 432  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 491
            GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN
Sbjct: 360  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 419

Query: 492  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 551
            MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN
Sbjct: 420  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 479

Query: 552  ILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDT 611
            ILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQINL  T+AWH++++ G +T GDT
Sbjct: 480  ILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIXTSAWHSESETGFITPGDT 539

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
             VRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FS
Sbjct: 540  QVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFS 599

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDTIADA TME IN+TI KAK+ VK+LIK AQ+KSLE EPGRTMMESFEN+VNQVLN
Sbjct: 600  IGIGDTIADAATMEKINETILKAKSEVKDLIKAAQEKSLEAEPGRTMMESFENRVNQVLN 659

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF  RT
Sbjct: 660  KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFNGRT 719

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHFTKDDYGPE RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK
Sbjct: 720  LPHFTKDDYGPEXRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 779

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ LDSLKMKK EF   +R+E+D 
Sbjct: 780  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQKLDSLKMKKREFLNVYRYEIDN 839

Query: 912  ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
            ENWNP YML E+++DLKTI+E R+VFDAEVQKLEADRYQL TEIAT+GD+SWP+PVNLKR
Sbjct: 840  ENWNPGYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNLKR 899

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            LIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVPG+D LS+EAQKNATLFFNILL
Sbjct: 900  LIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNILL 959

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            RSTFASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 960  RSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1009


>gi|195059969|ref|XP_001995730.1| GH17604 [Drosophila grimshawi]
 gi|193896516|gb|EDV95382.1| GH17604 [Drosophila grimshawi]
          Length = 1889

 Score = 1890 bits (4897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1038/1924 (53%), Positives = 1324/1924 (68%), Gaps = 193/1924 (10%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L   ++ K K+  
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPNNPKIKEIV 126

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIE 181
            +K +  P+ RL  + D CK KT CEGG+++D+   + + +P KK   GGCG  QP +   
Sbjct: 127  MKSKGQPRKRLAYVYDLCKGKTICEGGEDMDLAKDNQQVDPNKKPGHGGCGHYQPSIRRT 186

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ + AE+K     N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARP
Sbjct: 187  GLDLTAEWK---HVNEDSQ------EKKIIVSAERVWEILKHITDEECFILGMDPKYARP 237

Query: 242  DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            DWMI+ VLP+PP  VRP+          DDLTH+LA II+ N  LR+ E +GA AH+I E
Sbjct: 238  DWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEGSGAAAHVIQE 297

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 298  NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD
Sbjct: 358  VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRD 414

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 415  NGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 475  RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTL 534

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
               RK+TKRD FI ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N+
Sbjct: 535  TAVRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNM 594

Query: 592  FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             RT + H D  D G    ++ GDT V +E G+L+ G LCKKTLGTS GSL+H+ + E+G 
Sbjct: 595  IRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGH 654

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            D A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +
Sbjct: 655  DIAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHN 714

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 715  MELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 774

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 775  QVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E
Sbjct: 835  GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVE 894

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
             Q + ++K+    F+K F+F+     W N  YM + + DD+  IKE+ +     +Q+LEA
Sbjct: 895  FQNMPTVKLSNKVFEKRFKFD-----WSNERYMRKVFADDV--IKEITES-SVAIQELEA 946

Query: 947  DRYQLATE------IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            +   L T+      I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V+  V 
Sbjct: 947  EWDHLVTDRDNLRTIFRNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVS 1006

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L  R  +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+
Sbjct: 1007 DLLNRCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIET 1066

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RF Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK 
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 1126

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            K PSL+VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV 
Sbjct: 1127 KAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
             YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNA
Sbjct: 1187 VYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNA 1244

Query: 1241 DKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------- 1286
            DKL+LRIRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+           
Sbjct: 1245 DKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1304

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                         +++ V+   DVD  RT+SN + EI +VLGIE
Sbjct: 1305 QTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIE 1364

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            AVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSF
Sbjct: 1365 AVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1424

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPS 1435
            EETVD+L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S
Sbjct: 1425 EETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGS 1484

Query: 1436 YMEG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
             M G     +  G TP+ +P   TP+ +   +P Y FSP   +S +T        GG +F
Sbjct: 1485 SMLGGAAIFMGGGSTPSMTP-PMTPWVN-CHTPRY-FSPPGHVSAMTP-------GGPSF 1534

Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS--PGYSPTSPGYSPTSPTYSPSSPGYS 1548
            SP+++   S  SP +SP+ PG SP+SPG S +   P     SP YSPTSP Y+ SSPG +
Sbjct: 1535 SPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGA 1594

Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS- 1607
              SP YSP+SP+YSPTSP Y+ TSP Y+  +P+++  S  YSP+S  YSPTSP YSPTS 
Sbjct: 1595 --SPNYSPSSPNYSPTSPLYTATSPRYASATPNFNAQSTGYSPSSSGYSPTSPVYSPTSN 1652

Query: 1608 ----PAYSPT-SPAYSPTSP----------------------------------AYSPTS 1628
                P+++ + S  YSP +                                    YSPTS
Sbjct: 1653 FQSSPSFAGSGSNLYSPGNAYSPSSSNYSPNSPSYSPMSPSYSPSSPSYSPTSPCYSPTS 1712

Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS--------------------- 1667
            PSYSPTSP Y+  +PSYSPTSP+YS  SP YSP SPAYS                     
Sbjct: 1713 PSYSPTSPKYTAVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1771

Query: 1668 --PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
              P SP Y+P SP YSP SP YSPTSP Y+P S ++SPS  YSP+       S YS TSP
Sbjct: 1772 GSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSATSP 1825

Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPGY 1783
             YSP  S YSP+S  YSP+SPTY+P++         +YSP+SP YSP+A   YSP++P Y
Sbjct: 1826 RYSPNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPTSPAY 1877

Query: 1784 SPSS 1787
            SPSS
Sbjct: 1878 SPSS 1881


>gi|159467413|ref|XP_001691886.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
            reinhardtii]
 gi|158278613|gb|EDP04376.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
            reinhardtii]
          Length = 1789

 Score = 1890 bits (4897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 966/1735 (55%), Positives = 1217/1735 (70%), Gaps = 121/1735 (6%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRK 63
            RFP+S A V +V+ +QF +  P EI+  SV +I   ET E+GKPK GGLSDPR+GT+DR 
Sbjct: 6    RFPFSSAPVRQVKAIQFSVWDPAEIKAYSVAEIVTSETYEKGKPKLGGLSDPRMGTMDRG 65

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
              C T  AN  + PG+FGH+ LA+P++HIGF+KTV+ ++R V ++ S++L D+DD K+  
Sbjct: 66   GICTTDGANANDSPGYFGHIALARPVYHIGFIKTVVRVLRCVSYHTSRLLVDKDDPKYAY 125

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
             L+I + + RL+  +  C+ K   E                       G  QP   ++G+
Sbjct: 126  GLRISDSEKRLRYFVHLCQGKKMDEA---------------------TGNPQPSYRLDGL 164

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
            K++AE+    K   D+EQ  + VERKQ LTA R L ++KRI  EDC+ LG + ++ RPDW
Sbjct: 165  KIMAEFP---KLKGDEEQEQDNVERKQELTAARALEIMKRIPAEDCRALGFDCRFTRPDW 221

Query: 244  MILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            MI+Q +P          +     R  DDLTH+LA I+R N  +++Q+  G P H+I+E  
Sbjct: 222  MIIQNMPVPPPPVRPSVMMDSSSRCEDDLTHKLAEILRTNNAIKKQDATGTPQHVIAEQI 281

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
              LQ+HI TYFDN  PG P++ Q+SGRPIKSI  RLK K GRIRGNLMGKRVDFSARTVI
Sbjct: 282  MALQYHITTYFDNSSPGIPKSNQKSGRPIKSISERLKGKSGRIRGNLMGKRVDFSARTVI 341

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            T DP I ID+LGVPWSIALNLT+PETVTP+NIE+L++LV+ GP+PPPG+TGAK+IIR+DG
Sbjct: 342  TGDPNIGIDELGVPWSIALNLTFPETVTPFNIEKLQKLVDNGPNPPPGETGAKHIIREDG 401

Query: 414  QRLDLRYLKKSSDHHLELGYKV-------------------ERHLNDGDFVLFNRQPSLH 454
            +R+ L  +K  +D  LE G KV                   ERHL +GD VLFNRQPSLH
Sbjct: 402  RRVSLAVVKGDADRRLEPGDKVGGKGTQMTADGGGVARCCVERHLINGDLVLFNRQPSLH 461

Query: 455  KMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCI 514
            KMS+MGHR++I+PYSTFRLNLSVT+PYNADFDGDEMNMHV Q+ ETRAE+  LMMVP+ I
Sbjct: 462  KMSMMGHRVRILPYSTFRLNLSVTTPYNADFDGDEMNMHVAQTHETRAEMANLMMVPRNI 521

Query: 515  VSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPL 574
            VSPQ+N+PVMGIVQD LLG R +TKRD FIEKD FMN +M  ED+DG VP P +LKPRPL
Sbjct: 522  VSPQANKPVMGIVQDALLGTRMMTKRDIFIEKDNFMNCVMGIEDWDGTVPMPAVLKPRPL 581

Query: 575  WTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTST 634
            WTGKQ+F++ +P  +NL   +AW+ D D   ++  D  V I +GELL+G LCKKT+G   
Sbjct: 582  WTGKQIFSMFVP-DVNLKNKSAWYKDADVPDMSVDDAQVLIRQGELLTGALCKKTVGNGA 640

Query: 635  GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKA 694
            G L+H+ W E GP AAR F+ + Q  VNYW+L +  SIGIGDT+ADAKTM  +N+ I +A
Sbjct: 641  GGLVHLTWLEHGPHAARGFINNVQRTVNYWVLNHGMSIGIGDTVADAKTMAKVNEIIEEA 700

Query: 695  KNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAM 754
            K  VK ++++ Q  +LE +PGRT+ ESFE +VNQ+LN  RD+AG +A  S+  SNN+  M
Sbjct: 701  KRKVKEVVEKYQQNALEAQPGRTIHESFEAQVNQILNKCRDDAGKAAYMSVDLSNNIIKM 760

Query: 755  VTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLR 814
            VTAGSKGS INISQM  CVGQQNVEGKRIPFGF +RTLPHF KDD GPE+RGFV NSYLR
Sbjct: 761  VTAGSKGSNINISQMMGCVGQQNVEGKRIPFGFQNRTLPHFNKDDLGPEARGFVGNSYLR 820

Query: 815  GLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQF 874
            GLTPQEFFFHAMGGREGLIDTAVKT+ TGYIQRRLVKAMED++V+Y GTVRNS GDV+QF
Sbjct: 821  GLTPQEFFFHAMGGREGLIDTAVKTASTGYIQRRLVKAMEDMVVRYGGTVRNSQGDVVQF 880

Query: 875  LYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELR 934
            LYGEDGMD+V IE Q  + LK   ++ DKA+R +   +   P+++  E  + L+T   + 
Sbjct: 881  LYGEDGMDAVRIEGQMFEYLKWDPAKLDKAYRIDTTRD-MPPDWLSAEEYEALRTDPAVE 939

Query: 935  DVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP--SDMHP 992
                 E+ +++ D   L  E+ T+GD    +P+NL RLIWNAQ  F   P RP  + +  
Sbjct: 940  QAMRDEMAQIKEDLRVLREEVLTNGDEKVNIPLNLARLIWNAQTKFNCKPHRPGWTGLQV 999

Query: 993  MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1052
             EV+  V +L ERL VV G D LSVEAQ+NAT+ F+ L+R   ASKRV+ E++L  +A +
Sbjct: 1000 KEVITKVRELCERLVVVIGSDGLSVEAQRNATIMFHSLVRMHLASKRVMSEYKLNNKALD 1059

Query: 1053 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1112
            W++GE+E+RF  +    GE +G VAAQS+GEP TQMTLNTFH+AGVSAKNVTLGVPRL E
Sbjct: 1060 WLLGELETRFFLAQAHAGECVGTVAAQSLGEPTTQMTLNTFHFAGVSAKNVTLGVPRLTE 1119

Query: 1113 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDP-DPMG-- 1169
            +IN+AK IKTP+L+V L PG+   K+ AK +Q  LEYT  ++V + TE+WYDP DP    
Sbjct: 1120 LINLAKNIKTPTLTVHLLPGLRENKDAAKEIQSKLEYTCFKNVVKTTEIWYDPVDPANAN 1179

Query: 1170 -TIIEEDVEFVKSYYEMP-DEDIAP-EKISPWLLRIELNREMMVDKKLSMAAVAEKINQE 1226
             T+I ED E + SYY++  DED+A   ++S WLLR ELNR  M+DK L++ AV + +  E
Sbjct: 1180 QTVIGEDEEMLSSYYDLAGDEDLAVLPRLSHWLLRFELNRGAMLDKGLTLGAVQKALQDE 1239

Query: 1227 FDDDLTCIFNDDNADKLILRIRIMN-DEAPKGELNDESAE--DDVFLKKIESNMLTEM-- 1281
            ++D +  + NDDNA+KLI+RIR++  +EA K    DESA+  +D  LK   + M   +  
Sbjct: 1240 WEDFINVLVNDDNAEKLIMRIRVVKTEEASK----DESADPTEDTMLKLSGAIMDVRLHG 1295

Query: 1282 ----------------------ALR----------GVNLLAVMCHEDVDARRTTSNHLIE 1309
                                  A R          G+NL  V+  E VD+RRT SN +IE
Sbjct: 1296 VPNIRKVFIRAENQHVYDKEKGAFRKYEEWILDTEGINLEQVLAFEGVDSRRTMSNSIIE 1355

Query: 1310 IIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1369
            ++EVLGIEA R AL  E+R VI FDGSYVNYRHLA L D MT +G LMAITRHGINRN  
Sbjct: 1356 VLEVLGIEAARAALFKEVRNVIQFDGSYVNYRHLACLVDIMTCKGCLMAITRHGINRNGN 1415

Query: 1370 GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI 1429
            GPM +CSFEETVDIL  AA+F E D L GV++NIM+G + P+GTG   L L++  L++A 
Sbjct: 1416 GPMTQCSFEETVDILYRAAMFGERDKLMGVSDNIMMGNMCPLGTGSFDLLLDESALESAF 1475

Query: 1430 ELQLPSYMEGLEFGMTPARSPVSGTPYHD-GMMSPGYLFSPNLRLSPVTDAQFSPYVGGM 1488
            ++Q+ +   G ++ MTP R   S +P    G MSP +L SP            SP+VG  
Sbjct: 1476 DVQIGNLAFGEDYTMTPGRMTPSRSPARTPGPMSPSHLLSP----------MHSPFVGS- 1524

Query: 1489 AFSPTSSPGYSPSSPG--YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG 1546
             FSP     +SP+  G    P SPGYSPTSPGYSPTSP YSPTSP YSPTSP YSP+SP 
Sbjct: 1525 GFSPMHPGAFSPAHGGGVGGPMSPGYSPTSPGYSPTSPRYSPTSPAYSPTSPAYSPTSPA 1584

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            YSPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPT
Sbjct: 1585 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT 1644

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
            SPAYSPTSPAY   SPAYSPTSP YSPTSPS SPTSP YSPTSP+YSPTSP+YSP
Sbjct: 1645 SPAYSPTSPAY---SPAYSPTSPQYSPTSPSMSPTSPRYSPTSPNYSPTSPNYSP 1696



 Score =  247 bits (631), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 146/238 (61%), Positives = 166/238 (69%), Gaps = 34/238 (14%)

Query: 1533 YSPTSPTYSPS-SPGYSPTSPAYSPTSPSYSPTSPSYSP-TSPSYSPTSP-SYSPTSPSY 1589
            Y+ T    +PS SP  +P      P SPS+   SP +SP     +SP  P ++SP     
Sbjct: 1488 YTMTPGRMTPSRSPARTP-----GPMSPSHL-LSPMHSPFVGSGFSPMHPGAFSPAHGGG 1541

Query: 1590 --SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
               P SP YSPTSP YSPTSP YSPTSPAYSPTSPAYSPTSP+YSPTSP+YSPTSP+YSP
Sbjct: 1542 VGGPMSPGYSPTSPGYSPTSPRYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1601

Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY 1707
            TSP+YSPTSP+YSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP+Y+P S  YSP+   
Sbjct: 1602 TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPA--- 1658

Query: 1708 SPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSP 1765
                        YSPTSP YSPTS S SPTSP YSP+SP YSP+SP        +YSP
Sbjct: 1659 ------------YSPTSPQYSPTSPSMSPTSPRYSPTSPNYSPTSP--------NYSP 1696



 Score =  201 bits (512), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 127/221 (57%), Positives = 149/221 (67%), Gaps = 33/221 (14%)

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSP-TSPAYSPTSP-AYSPTSPSY--SPTSPSYSPT 1641
            +PS SP   +  P SPS+   SP +SP     +SP  P A+SP        P SP YSPT
Sbjct: 1496 TPSRSPAR-TPGPMSPSHL-LSPMHSPFVGSGFSPMHPGAFSPAHGGGVGGPMSPGYSPT 1553

Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY 1701
            SP YSPTSP YSPTSP+YSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP         
Sbjct: 1554 SPGYSPTSPRYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP--------- 1604

Query: 1702 SPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGN 1760
                AYSP+SP  SP SP YSPTSP YSPTS +YSPTSP+YSP+SP YSP+SP      +
Sbjct: 1605 ----AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP----AYS 1656

Query: 1761 PDYSPSSPQYSPSA--------GYSPSAPGYSPSSTSQYTP 1793
            P YSP+SPQYSP++         YSP++P YSP+S + Y+P
Sbjct: 1657 PAYSPTSPQYSPTSPSMSPTSPRYSPTSPNYSPTSPN-YSP 1696


>gi|162951789|gb|ABY21756.1| RE30267p [Drosophila melanogaster]
          Length = 1887

 Score = 1890 bits (4897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1036/1924 (53%), Positives = 1331/1924 (69%), Gaps = 195/1924 (10%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIE 181
            +K R  P+ RL  + D CK KT CEGG+++D+  ++ + +P KK   GGCG  QP +   
Sbjct: 127  MKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRT 186

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ + AE+K Q   N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARP
Sbjct: 187  GLDLTAEWKHQ---NEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYARP 237

Query: 242  DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            DWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  LR+ E +GA AH+I E
Sbjct: 238  DWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQE 297

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 298  NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD
Sbjct: 358  VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRD 414

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 415  NGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 475  RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTL 534

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
               RK+TKRD FI ++  MN+LM+   +D K+PQP ILKPRPLWTGKQ+F+LIIP  +N+
Sbjct: 535  TAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNM 594

Query: 592  FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             RT + H D  D+G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G 
Sbjct: 595  IRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGH 654

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            D A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +
Sbjct: 655  DIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHN 714

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 715  MELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 774

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 775  QVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E
Sbjct: 835  GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVE 894

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
             Q + ++K+    F+K F+F+     W N   M + + DD+  IKE+ D  +A +Q+LEA
Sbjct: 895  FQNMPTVKLSNKSFEKRFKFD-----WSNERLMKKVFTDDV--IKEMTDSSEA-IQELEA 946

Query: 947  DRYQLAT------EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            +  +L +      +I  +G+S   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V 
Sbjct: 947  EWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVK 1006

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L ER  +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW++GEIE+
Sbjct: 1007 TLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIET 1066

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RF Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK 
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 1126

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            K PSL+VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV 
Sbjct: 1127 KAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
             YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNA
Sbjct: 1187 VYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNA 1244

Query: 1241 DKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------- 1286
            DKL+LRIRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+           
Sbjct: 1245 DKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1304

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                         +++ V+   DVD  RT+SN + EI +VLGIE
Sbjct: 1305 QTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIE 1364

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            AVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSF
Sbjct: 1365 AVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1424

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPS 1435
            EETVD+L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L +
Sbjct: 1425 EETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGN 1484

Query: 1436 YMEG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
             M G     +  G TP+ +P   TP+ +   +P Y FSP   +S +T        GG +F
Sbjct: 1485 SMLGGAAMFIGGGSTPSMTP-PMTPWAN-CNTPRY-FSPPGHVSAMTP-------GGPSF 1534

Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS--PGYSPTSPGYSPTSPTYSPSSPGYS 1548
            SP+++   S  SP +SP+ PG SP+SPG S +   P     SP YSPTSP Y+ SSPG +
Sbjct: 1535 SPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGA 1594

Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-- 1606
              SP YSP+SP+YSPTSP Y+  SP Y+ T+P+++P S  YSP+S  YSPTSP YSPT  
Sbjct: 1595 --SPNYSPSSPNYSPTSPLYA--SPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQ 1650

Query: 1607 ---SPAYSPT-SPAYSPTSP----------------------------------AYSPTS 1628
               SP+++ + S  YSP +                                    YSPTS
Sbjct: 1651 FQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTS 1710

Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS--------------------- 1667
            PSYSPTSP+Y+P +PSYSPTSP+YS  SP YSP SPAYS                     
Sbjct: 1711 PSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1769

Query: 1668 --PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
              P SP Y+P SP YSP SP YSPTSP Y+P S ++SPS  YSP+       S YS TSP
Sbjct: 1770 GSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSATSP 1823

Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPGY 1783
             YSP  S YSP+S  YSP+SPTY+P++         +YSP+ P YSP+A   YSP++P Y
Sbjct: 1824 RYSPNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTPPMYSPTAPSHYSPTSPAY 1875

Query: 1784 SPSS 1787
            SPSS
Sbjct: 1876 SPSS 1879


>gi|330795314|ref|XP_003285719.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
 gi|325084350|gb|EGC37780.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
          Length = 1755

 Score = 1889 bits (4893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 947/1581 (59%), Positives = 1168/1581 (73%), Gaps = 102/1581 (6%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            M   FP S AE+ KV+ VQFGILSPDEIR MSV +IEH ET E GKPK GGL DP +GTI
Sbjct: 1    MAAFFPPSSAELRKVKKVQFGILSPDEIRNMSVARIEHPETYENGKPKIGGLLDPAMGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            D+  +C+TC+  MAECPGHFGH+ELAKP+FHIGF+ TVL I+R VCF+CSK+L D  ++ 
Sbjct: 61   DKTQRCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCFHCSKLLTDTSEYS 120

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGG-----DEIDVPGQDGEEPLKKNKGGCGAQQ 175
            F+QALKI+N K+RL  +++ CKNK  C  G     +E D+   D E       GGCG   
Sbjct: 121  FRQALKIKNQKHRLNAVVEICKNKKVCAIGGNEEEEEHDLSKTDEELDKAVKHGGCGNVL 180

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            PK+T E +K+I E+K         +   E +E+K  L+AERVL +LKRI DED   +G+N
Sbjct: 181  PKITKEDLKIIVEFK---------DVTDESIEKKSVLSAERVLNILKRIKDEDSIAMGIN 231

Query: 236  PKYARPDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            P +A+ DWM+  VLP          +     R  DDLTH+LA I++ N+ L+RQE+NGAP
Sbjct: 232  PDWAKADWMVATVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANKELQRQEKNGAP 291

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
            AHII+E  Q LQFH+ATY DNE+PG P+A QRSGRP+KSI  RLK KEGRIRGNLMGKRV
Sbjct: 292  AHIITEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRV 351

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT DP ++IDQ+GVP SIALNLTYPETVTP+NI++++EL+  GP+  PG   A
Sbjct: 352  DFSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPNEHPG---A 408

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KYIIR+DG R DLR++KK SD HLE GYKVERH+NDGD V+FNRQPSLHKMS+MGHRIK+
Sbjct: 409  KYIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKV 468

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV+E+MMVP+ IVSPQSNRPVMG
Sbjct: 469  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMG 528

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDTLLG R  TKRDTFIE+D+ MNILMW   +DGKVP P ILKP+ LWTGKQ+F+LII
Sbjct: 529  IVQDTLLGSRLFTKRDTFIERDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLII 588

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            P  INL R  + H D +    +AGDT V IE+GELL+G LCK++LG + GS+IHV+  E 
Sbjct: 589  P-DINLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEH 647

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G D  R F+  TQ +VN+WL+   F++GIGDTIADA+TME +  TIS AKN VK LI +A
Sbjct: 648  GHDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADAQTMEKVTLTISSAKNQVKELIIKA 707

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
            Q+K  E +PG+++ME+FE KVNQVLN ARD AGSSAQ SLSE+NNLKAMVTAGSKGSFIN
Sbjct: 708  QNKQFECQPGKSVMETFEQKVNQVLNKARDTAGSSAQNSLSEANNLKAMVTAGSKGSFIN 767

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQM ACVGQQNVEGKR+PFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA
Sbjct: 768  ISQMMACVGQQNVEGKRVPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 827

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKTSETGYIQRRLVKAMED+ +KYD TVRNSLGDVIQF YGEDG+D  +
Sbjct: 828  MGGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCF 887

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +ESQ++DSL+    + ++ ++  +++ ++   +M    I+ ++    +RD  + E ++++
Sbjct: 888  VESQSIDSLRKDNHDLERMYKHMVEKPDYGEGWMDPLVIELVRGDPLIRDTLEKEFERIK 947

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
            +DR  +  EI  +G++SWPLPVNL+RLI NAQK F +D RR SD++P  VV  ++K+  R
Sbjct: 948  SDRTLMRNEIIPTGENSWPLPVNLRRLITNAQKLFNIDIRRVSDLNPAFVVLEIEKVVSR 1007

Query: 1006 LKVVPGEDPLS---------VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIG 1056
            LK++   D             E   NATL F+IL+RST ASKRVL E RLT +AF WV+G
Sbjct: 1008 LKIIATADTTEDDESFNRAWSEVYHNATLLFSILVRSTMASKRVLTEFRLTEKAFLWVVG 1067

Query: 1057 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1116
            EIES+FLQ+L  PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN+
Sbjct: 1068 EIESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINI 1127

Query: 1117 AKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDV 1176
            AK++KTPSL+++LKP +    + AK V+  LEYTTL +VT ATE++YDPDP  TII ED 
Sbjct: 1128 AKQVKTPSLTIYLKPHIARDMDCAKTVKSHLEYTTLANVTSATEIYYDPDPENTIISEDA 1187

Query: 1177 EFVKSYYEMP-DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIF 1235
            EFV SY+E   +ED+  E++SPWLLRIEL+R M+  KKL+MA + + + ++F  +L CIF
Sbjct: 1188 EFVNSYFEFGMNEDVGVERMSPWLLRIELDRGMVTAKKLTMAEITQCVVRDFGLNLNCIF 1247

Query: 1236 NDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR----------- 1284
            +DDNADKLILRIR++  E  K E +D    DD FL++IESNML+ M LR           
Sbjct: 1248 SDDNADKLILRIRMVESEDMKTENDD----DDQFLRRIESNMLSGMVLRGIKGIKKVFMR 1303

Query: 1285 -------------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                     GV+LL VM H DVD  RTTSN ++EII+VLGIEAV
Sbjct: 1304 TDDKIPKILDDGSYGNREEWILDTDGVSLLEVMSHPDVDHSRTTSNDIVEIIQVLGIEAV 1363

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R ALL ELR VISFDGSYVNYRHLA+L D MTYRGHLMAITRHGINR +TGP+MRCSFEE
Sbjct: 1364 RNALLKELRAVISFDGSYVNYRHLAVLADVMTYRGHLMAITRHGINRVETGPLMRCSFEE 1423

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEG 1439
            TV+IL+DAA+F+E+D ++GVTENI+LGQL P+GTG   +YLN +M+KNA  + LP     
Sbjct: 1424 TVEILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVYLNQDMVKNAHSIALPE-PSA 1482

Query: 1440 LEFGMTP-ARSPV-----SGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPT 1493
            + +  TP +++P      S TP+H+   +P         LSP  +     Y G  + S  
Sbjct: 1483 ISYPDTPGSQTPSYSYDGSSTPFHNPYDAP---------LSPFNET----YRGDFSPSAM 1529

Query: 1494 SSPGYSPSSPGYSPSSPGYSP 1514
            +SP Y     GY  SS  Y P
Sbjct: 1530 NSPAY---KGGYG-SSYSYFP 1546


>gi|393905343|gb|EFO23174.2| DNA-directed RNA polymerase II largest subunit [Loa loa]
          Length = 1870

 Score = 1888 bits (4891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1061/1842 (57%), Positives = 1328/1842 (72%), Gaps = 117/1842 (6%)

Query: 10   AEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
            A +  V+ VQFGILSPDEI++MS+ +IE  E  E GKPK GGL DPR G +DR+ +C TC
Sbjct: 10   APLRTVKRVQFGILSPDEIKRMSIGEIEFSEIYENGKPKLGGLMDPRQGVVDRRGRCMTC 69

Query: 70   TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK--I 127
              ++A+CPGHF H+ELAKP+FHIGF+   L ++R VCF CS+++ D+D  + K+ LK   
Sbjct: 70   AGSLADCPGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKDSPRVKELLKKTA 129

Query: 128  RNPKNRLKKILDACKNKTKCEGGDEID-VPGQDGEEPLKKNK-GGCGAQQPKLTIEGMKM 185
             N + RL  I + CK+KT CEGGDE+  V G+DGEE  K+ K GGCG  QP     G+ +
Sbjct: 130  GNARRRLTVIYEICKSKTVCEGGDELHTVGGEDGEESEKEIKSGGCGRYQPSYKRVGIDI 189

Query: 186  IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
            IAE+K  +  N+D +      ERK  LTAER L + K ISD DC +LG++P+YARPDWMI
Sbjct: 190  IAEWK--KHINEDTQ------ERKIVLTAERALEIFKSISDSDCLILGMDPRYARPDWMI 241

Query: 246  LQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
             QV+P+PP  VRP+          DDLTH+L+ I++ N  L+R E NGA AH+++E  +L
Sbjct: 242  AQVIPVPPLTVRPAVVTFGSARNQDDLTHKLSDIVKTNNQLKRNEANGAAAHVLAEDVKL 301

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQ+H+AT  DN +PG P ATQ+ GRP+KSI  RLK KEGRIRGNLMGKRVDFSARTVITP
Sbjct: 302  LQYHVATLIDNSIPGLPAATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITP 361

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP + ID +GVP +IA N+T+PE VTP+NI++L+ELV  G    PG   AKYIIR++G R
Sbjct: 362  DPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELVNRGDSQYPG---AKYIIRENGAR 418

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
            +DLRY  +++D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGH++KI+P+STFRLNL
Sbjct: 419  VDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHKVKILPWSTFRLNL 478

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            SVT+PYNADFDGDEMN+H+PQS ET+AEV E+ MVP+ +++PQ+N+PVMGIVQDTL   R
Sbjct: 479  SVTTPYNADFDGDEMNLHLPQSLETKAEVSEIAMVPRQLITPQANKPVMGIVQDTLTAVR 538

Query: 536  KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
             +TKRD FIE    M++LM   ++DGKVPQP ILKP+PLWTGKQVF LIIP  +N+ RT 
Sbjct: 539  MMTKRDVFIELPRMMDLLMQMPNWDGKVPQPAILKPKPLWTGKQVFTLIIPGNVNVLRTH 598

Query: 596  AWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 651
            + H D+ D G    ++ GDT V IE GELLSG +C +T+G S G+L+HV+  E+G + A 
Sbjct: 599  STHPDDEDNGPYKWISPGDTKVIIEHGELLSGIICSRTIGRSAGNLLHVVTLELGWEVAA 658

Query: 652  KFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711
             F  H Q +VN WL+    +IGIGDTIAD  T   I +TI KAK +V  +I++A +  LE
Sbjct: 659  HFYSHIQTVVNAWLVAEGHTIGIGDTIADQATYRDIQETIRKAKLDVVEVIEKAHNDELE 718

Query: 712  PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 771
            P PG T+ ++FEN VN++LN ARD  G SAQ+SLSE NN KAMV AGSKGS INISQ+ A
Sbjct: 719  PTPGNTLRQTFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIA 778

Query: 772  CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 831
            CVGQQNVEGKRIPFGF  RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREG
Sbjct: 779  CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREG 838

Query: 832  LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL 891
            LIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNSLG ++Q  YGEDG+D +W+E+Q++
Sbjct: 839  LIDTAVKTAETGYIQRRLIKAMESVMVSYDGTVRNSLGQLVQLRYGEDGLDGMWVENQSM 898

Query: 892  DSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL 951
             S+K   + F+K F+ ++ +E        +  + +L+   E     +AE  +LE DR +L
Sbjct: 899  PSMKPTNALFEKEFKLDLSDEKSLRKLYTENVVRELQGSAEALKEVEAEWAQLEEDR-RL 957

Query: 952  ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG 1011
              +I   GD+   LP NL+R+IWNAQK F+V+ R+P+D++P+ V+E V +L ++L +V G
Sbjct: 958  LRKIFPKGDAKIVLPCNLQRMIWNAQKIFRVELRKPTDLNPLRVIEGVKELSKKLVIVSG 1017

Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
            ED +S +AQ NATL  NILLRST  +KR+ ++HRL  E FEW+IGEIESRF Q++V PGE
Sbjct: 1018 EDRISKQAQYNATLLMNILLRSTLCAKRMAEKHRLNSEGFEWLIGEIESRFKQAIVQPGE 1077

Query: 1072 MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKP 1131
            M+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+KK KTPSL+VFL+ 
Sbjct: 1078 MVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLQG 1137

Query: 1132 GVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIA 1191
                  E+AK+V C LE+TTLR VT  T ++YDPDP  T+IEED E+V  +YEMPD D  
Sbjct: 1138 IAAKDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPKNTVIEEDQEWVNIFYEMPDFD-- 1195

Query: 1192 PEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMN 1251
            P + SPWLLRIEL+R  M DKKL+M A+A+KI+Q F DDL  I+ DDNA+KL+ R+RI N
Sbjct: 1196 PSRCSPWLLRIELDRRRMTDKKLTMEAIADKIHQGFGDDLNVIYTDDNAEKLVFRLRITN 1255

Query: 1252 DEAPKGELND--ESAEDDVFLKKIESNMLTEMALRGVN---------------------- 1287
             E+ KG  ++  E  EDDVFL+ IE+NML+++ L+G+                       
Sbjct: 1256 QESDKGNEDEQVERMEDDVFLRCIETNMLSDLTLQGIEAITKVYMHKPTTDDKKRVVITP 1315

Query: 1288 ------------------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
                              L  V+  ++VD  RTTSN + EI EVLGIEAVR+A+  E+  
Sbjct: 1316 DGGFKAIPEWLLETDGTALAKVLSEQNVDPVRTTSNDICEIFEVLGIEAVRKAIEREMNH 1375

Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
            VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR + G +MRCSFEET DIL++AAV
Sbjct: 1376 VISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETADILMEAAV 1435

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEG---LEFGMTP 1446
             AE D ++GV+ENIMLGQLA  GTG   L L+ +  K A+E+Q    + G   + FG + 
Sbjct: 1436 HAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADKCKLAMEIQTGGGLLGTGGMYFGSSM 1495

Query: 1447 ARSPVSG----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPT--SSPGYSP 1500
            + +  +     TP++ G  +P Y        SP T +  +P  GG  FSP+  S  G+SP
Sbjct: 1496 SPASSAMSPAQTPWNAGT-TPAY----GAAWSPATGSGMTP--GGAGFSPSGHSEGGFSP 1548

Query: 1501 --------------SSPGYSPSSPG-YSPTSPGYSPTSPGYSPTSPGYSPTSPT--YSPS 1543
                          S  G SPS  G YSP +  Y     G S  SPGYSPTSP   Y  S
Sbjct: 1549 YGGSGSWSPGSPGGSLGGMSPSGAGAYSPAASDYGSGLEGLS--SPGYSPTSPASPYGAS 1606

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1603
            SP Y   SP YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP YSPTSPSY
Sbjct: 1607 SPAYGVMSPRYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPGYSPTSPSY 1666

Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
            SPTSP+YSPTSP+YSP SP YSP+SP YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTS
Sbjct: 1667 SPTSPSYSPTSPSYSPASPGYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTS 1726

Query: 1664 PAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY--------SPSSPRLS 1715
            P+YSP SPGYSP+SP YSPTSPTYSPTSP+Y+P S +YSPS           +PSSP   
Sbjct: 1727 PSYSPASPGYSPSSPRYSPTSPTYSPTSPAYSPSSPQYSPSSPQYSPSSPQYTPSSPVGD 1786

Query: 1716 PASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAG 1757
             +  YSPTSP YSP+S  YSP+SP YSP+SP YSPSSP  AG
Sbjct: 1787 ASPAYSPTSPQYSPSSPRYSPSSPQYSPTSPQYSPSSPGGAG 1828


>gi|430812931|emb|CCJ29676.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 1762

 Score = 1888 bits (4890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1004/1785 (56%), Positives = 1261/1785 (70%), Gaps = 132/1785 (7%)

Query: 2    DTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGT 59
            D  F  S A + +V  VQFGILSP+EIR MSV +IE+ E  +    +P+ GGL DPRLGT
Sbjct: 4    DLAFAPSSAVLRQVEEVQFGILSPEEIRAMSVAKIEYPEIMDESGHRPRIGGLLDPRLGT 63

Query: 60   IDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH 119
            IDR  KC+TC  +MAECPGHFGH+ELAKP+FHIGF+  +  I+  VC NC K+ ADE+  
Sbjct: 64   IDRNFKCQTCGESMAECPGHFGHIELAKPVFHIGFLMKIKKILECVCLNCGKLKADENSP 123

Query: 120  KFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK-NKGGCGAQQPKL 178
            KF ++ + R+PK+RL  + + CK K  CE    ID P  D  E       GGCG  QP +
Sbjct: 124  KFLESQRYRDPKSRLIAVWNICKTKMICE----IDQPVNDHYEAKSMIGHGGCGNLQPII 179

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              +G+K+ A YK   +  D +  LP+    ++ LT   V  V K IS ED   +GLN +Y
Sbjct: 180  RKDGLKLWATYK---RPKDSESDLPD----RRLLTPLEVYTVFKHISSEDMAKMGLNEEY 232

Query: 239  ARPDWMILQVLPIPPPP----------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARPDWMI+ VLP+PPP            R  DDLTH+L+ II+ N N+RR E+ GAP H+
Sbjct: 233  ARPDWMIITVLPVPPPSVRPSISVDGTCRGEDDLTHKLSDIIKANANVRRYEQEGAPMHV 292

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            +SE+ QLLQFH+ATY DN++ GQP+A Q++GRP+KSI +RLK KEGR+RGNLMGKRVDFS
Sbjct: 293  VSEYEQLLQFHVATYMDNDIAGQPQALQKTGRPLKSIRARLKGKEGRLRGNLMGKRVDFS 352

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVIT DP +++D+LGVP SIA  LTYPETVTPYNI +L+ELV  GP+  PG   AKYI
Sbjct: 353  ARTVITGDPNLSLDELGVPRSIARILTYPETVTPYNIHKLQELVRNGPNEHPG---AKYI 409

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IRD G+R+DLRY K++ D  L+ G++VERH+ DGD V+FNRQPSLHKMS+MGHR+K+MPY
Sbjct: 410  IRDTGERIDLRYHKRAGDIPLQYGWRVERHITDGDVVIFNRQPSLHKMSMMGHRVKVMPY 469

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFR+NLSVT PYNADFDGDEMN+HVPQS ETRAE++E+ MVPK IVSPQSN+PVMGIVQ
Sbjct: 470  STFRINLSVTPPYNADFDGDEMNLHVPQSEETRAEIIEICMVPKQIVSPQSNKPVMGIVQ 529

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL G +K+T+RD F+ KD  MNIL+W  ++DG +P P I+KP+ +WTGKQ+ +++IPK 
Sbjct: 530  DTLAGVKKLTRRDNFLSKDQVMNILLWVPEWDGNMPPPAIIKPKAMWTGKQILSMVIPKG 589

Query: 589  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            IN  R      D  +  +T  DT + +E GE++ G + KKT+G S G L+H I  E GP+
Sbjct: 590  INFIRD-----DEKQTPMTPDDTGMMLENGEIIYGIVDKKTVGASQGGLVHTIMREKGPE 644

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
              R F    Q +VNYWLL N FSIGIGDTIADA TM  I +TI++AK  V+ +I  AQ  
Sbjct: 645  VCRVFFNGIQMVVNYWLLHNGFSIGIGDTIADANTMRDITNTIAEAKAKVQEIILDAQQN 704

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             L+ EPG T+ ESFE+KV++ LN ARD AG SAQ SL +SNN+K MVTAGSKGSFINISQ
Sbjct: 705  RLQVEPGMTLRESFESKVSRALNQARDTAGRSAQMSLKDSNNVKQMVTAGSKGSFINISQ 764

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            M+ACVGQQ VEGKRIP+GF  RTLPHFTKDDY PES GF+ENSYLRGLTPQEFFFHAM G
Sbjct: 765  MSACVGQQIVEGKRIPYGFKYRTLPHFTKDDYSPESGGFIENSYLRGLTPQEFFFHAMAG 824

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRLVKA+ED+MVKYDGTVRNSLGD+IQ +YGEDG+D V +E 
Sbjct: 825  REGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIIQLVYGEDGLDGVSVEY 884

Query: 889  QTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            Q LDSL++   EFD+ +R + MD ++   P Y+  E  ++++    ++++ D E  +L  
Sbjct: 885  QNLDSLRLSNEEFDRRYRVDVMDPKKTIFPLYL--EAGNEIEGDMAIQNLLDQEYNQLCE 942

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L   I   GD   PLPVN++R+I NAQ+ F +D R+ +D++P +++  V++  +RL
Sbjct: 943  DRELLRNFIFKDGDGRRPLPVNIQRIIRNAQQIFHIDKRKATDLNPRDIILGVNETIKRL 1002

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             VV G D  + E+Q+NATL F ILLRS  AS+RV++E+RL + AFEWV+GEIE+RF+ S+
Sbjct: 1003 TVVRGNDKFTRESQENATLLFQILLRSRLASRRVIEEYRLNKVAFEWVLGEIETRFIHSV 1062

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
              PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+K++TLGVPRL+EI+NVAK IKTPSL+
Sbjct: 1063 ANPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKSITLGVPRLKEILNVAKTIKTPSLT 1122

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            ++L P V+   E AK VQ A+E+TTL++VT  TE++YDPDP  T+IEED  FV++++ +P
Sbjct: 1123 IYLTPEVSKDMESAKQVQTAIEHTTLKTVTSVTEIFYDPDPQQTVIEEDRTFVEAFFAIP 1182

Query: 1187 DEDIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            DED+     + S WLLR+EL+R  M+DKKLSM+ VA KI + F  DL  I+++DNADKL+
Sbjct: 1183 DEDVEANLHRQSSWLLRLELDRAKMLDKKLSMSDVAAKITESFHKDLFVIWSEDNADKLV 1242

Query: 1245 LRIRIMNDEAPKGELNDESAEDD-VFLKKIESNMLTEMALRGV----------------- 1286
            +R R++ DE    + +D+   ++ V LK+IES+ML  ++LRGV                 
Sbjct: 1243 IRCRVIKDEEKSFDDDDDDPIEEDVLLKRIESHMLESISLRGVPNISRVFMMEHKTVYQS 1302

Query: 1287 ------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELR 1328
                              NL  VM  E+VD RRT SN  +EI++VLGIEA R ALL ELR
Sbjct: 1303 ENGEFVRGEEWVLETDGINLAEVMAVENVDPRRTYSNSFVEILQVLGIEATRAALLKELR 1362

Query: 1329 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1388
             VI FDGSYVNYRHL++L DTMT RGHLMAITRHGINR +TG +MRCSFEETV+IL++AA
Sbjct: 1363 NVIEFDGSYVNYRHLSLLADTMTSRGHLMAITRHGINRAETGVLMRCSFEETVEILMEAA 1422

Query: 1389 VFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTP-- 1446
               E D  RG++ENIMLGQLAP+GTG+  + L+++ML   +  +          G TP  
Sbjct: 1423 AAGEMDDCRGISENIMLGQLAPLGTGEFDVILDEDMLNEVVVDRQMFRGASAALGKTPLY 1482

Query: 1447 --------ARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGY 1498
                    +RSP+S + Y     S G  FSP ++    T   F+ Y GG   SP    G 
Sbjct: 1483 DDQATPYDSRSPMSDSGYVGS--SDGAAFSPLVQSGSETPGGFTEYGGGFGVSPY---GA 1537

Query: 1499 SPSSPGYSPSSP--GYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSP 1556
            S  SPGY P SP  G SP SP YSP S  +SPTSP  +  SP++SP+SP  SP SPAYSP
Sbjct: 1538 SLQSPGYHPFSPFSGTSPVSPSYSPASV-FSPTSPQIAGMSPSFSPTSPMCSPISPAYSP 1596

Query: 1557 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP------------------ 1598
            TSP+YSPTSPSYSPTSPSYSPTSP +SPTSP+YSPTSP                      
Sbjct: 1597 TSPAYSPTSPSYSPTSPSYSPTSPRFSPTSPAYSPTSPIRHHQSIHRLHLLTLQRHQLIL 1656

Query: 1599 -TSPSYSPTSPAYSPTSPA---------------------YSPTSPAYSPTSPSYSPTSP 1636
             TSP+YSPTSPAYSPTSPA                     +SPTSPAYSPTSPSYSPTSP
Sbjct: 1657 LTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPRFSPTSPAYSPTSPSYSPTSP 1716

Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
            +YSPTSP YSPTSP YSPTSP YSPTSP YSP+SP YSP SP +S
Sbjct: 1717 AYSPTSPRYSPTSPRYSPTSPRYSPTSPTYSPSSPNYSPISPRHS 1761



 Score =  144 bits (363), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 118/283 (41%), Positives = 149/283 (52%), Gaps = 49/283 (17%)

Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
            +P Y   +  Y   SP  S +    S    ++SP   S S T   ++     +  +    
Sbjct: 1479 TPLYDDQATPYDSRSP-MSDSGYVGSSDGAAFSPLVQSGSETPGGFTEYGGGFGVSPYGA 1537

Query: 1611 SPTSPAYSPTSP--AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
            S  SP Y P SP    SP SPSYSP S  +SPTSP  +  SPS+SPTSP  SP SPAYSP
Sbjct: 1538 SLQSPGYHPFSPFSGTSPVSPSYSPAS-VFSPTSPQIAGMSPSFSPTSPMCSPISPAYSP 1596

Query: 1669 TSPGYSPTSPS--------------YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
            TSP YSPTSPS              +SPTSP YSPTSP  + QS      L        L
Sbjct: 1597 TSPAYSPTSPSYSPTSPSYSPTSPRFSPTSPAYSPTSPIRHHQSIHRLHLLTLQRHQLIL 1656

Query: 1715 SPASPYSPTSPNYSPTSSS---------------------YSPTSPSYSPSSPTYSPSSP 1753
              +  YSPTSP YSPTS +                     +SPTSP+YSP+SP+YSP+SP
Sbjct: 1657 LTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPRFSPTSPAYSPTSPSYSPTSP 1716

Query: 1754 YNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTPQT 1795
                     YSP+SP+YSP++  YSP++P YSP+S + Y+P +
Sbjct: 1717 A--------YSPTSPRYSPTSPRYSPTSPRYSPTSPT-YSPSS 1750



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 81/173 (46%), Gaps = 11/173 (6%)

Query: 1628 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTY 1687
            +P Y   +  Y   SP  S +    S    ++SP   + S T  G++     +  +    
Sbjct: 1479 TPLYDDQATPYDSRSP-MSDSGYVGSSDGAAFSPLVQSGSETPGGFTEYGGGFGVSPYGA 1537

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTS---PNYSPTSSSYSPTSPSYSPS 1744
            S  SP Y+P    +SP    SP SP  SPAS +SPTS      SP   S+SPTSP  SP 
Sbjct: 1538 SLQSPGYHP----FSPFSGTSPVSPSYSPASVFSPTSPQIAGMSP---SFSPTSPMCSPI 1590

Query: 1745 SPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNR 1797
            SP YSP+SP  +         S      S  +SP++P YSP+S  ++    +R
Sbjct: 1591 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPRFSPTSPAYSPTSPIRHHQSIHR 1643


>gi|188532141|gb|ACD63082.1| RNA polymerase II largest subunit [Beta vulgaris]
          Length = 1012

 Score = 1887 bits (4888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 895/1012 (88%), Positives = 945/1012 (93%), Gaps = 12/1012 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPMFHIGF+KTVLSIMR VCFNCSKILADE+DHKFKQALKIRNPKNRLK+IL+AC
Sbjct: 1    HLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHKFKQALKIRNPKNRLKRILEAC 60

Query: 142  KNKTKCEGGDEIDVPGQDGE--EPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            KNK KCEGGD +DV  QD +  E  KK +GGCGAQQP  TIEGMK+IAEYK  +KK+D+Q
Sbjct: 61   KNKKKCEGGDSLDVQDQDQDDGESAKKTRGGCGAQQPTFTIEGMKIIAEYKMTKKKSDEQ 120

Query: 200  EQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP--------- 250
            EQLPEP ERKQ L+AE+VL VLKR+SDEDCQL+G NPKYARPDWMILQVLP         
Sbjct: 121  EQLPEPAERKQQLSAEKVLSVLKRVSDEDCQLMGFNPKYARPDWMILQVLPIPPPPVRPS 180

Query: 251  -IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELP 309
             +     R  DDLTHQLAMIIRHN+NLRRQERNGAPAHIISEFAQLLQFHIATYFDNELP
Sbjct: 181  VMMDTSSRSEDDLTHQLAMIIRHNDNLRRQERNGAPAHIISEFAQLLQFHIATYFDNELP 240

Query: 310  GQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWS 369
            GQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSARTVITPDP INID+LGVPWS
Sbjct: 241  GQPRATQRSGRPIKSICTRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWS 300

Query: 370  IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHL 429
            IALNLTYPETVTPYNIERLKELV+YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHL
Sbjct: 301  IALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHL 360

Query: 430  ELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDE 489
            ELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDE
Sbjct: 361  ELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDE 420

Query: 490  MNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVF 549
            MNMHVPQSFET AEV ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVF
Sbjct: 421  MNMHVPQSFETXAEVXELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVF 480

Query: 550  MNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAG 609
            MNILMWWEDFDGK+P PTILKPRPLWTGKQVFNLIIPKQINL RT+AWH++ + G +T G
Sbjct: 481  MNILMWWEDFDGKIPAPTILKPRPLWTGKQVFNLIIPKQINLIRTSAWHSEAETGFITPG 540

Query: 610  DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
            DT VRIE+GELL+GTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 
Sbjct: 541  DTQVRIERGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNG 600

Query: 670  FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
            FSIGIGDTIADA TME IN+TISKAKN VK LIK AQ+K LE EPGRTMMESFEN+VNQV
Sbjct: 601  FSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQV 660

Query: 730  LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
            LN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+D
Sbjct: 661  LNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFID 720

Query: 790  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 849
            RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL
Sbjct: 721  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 780

Query: 850  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM 909
            VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK EFD  FR+E 
Sbjct: 781  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKREFDNVFRYEF 840

Query: 910  DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNL 969
            D  NWNP+YML E+++DLKTI+E R+VFDAEVQKLEADRYQL TEIAT+GD+SWP+PVNL
Sbjct: 841  DNANWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRYQLGTEIATTGDNSWPMPVNL 900

Query: 970  KRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNI 1029
            KRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVPG+D LS+EAQKNATLFFNI
Sbjct: 901  KRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDFLSMEAQKNATLFFNI 960

Query: 1030 LLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            LLR+TFASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 961  LLRTTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1012


>gi|188532139|gb|ACD63081.1| RNA polymerase II largest subunit [Asparagus officinalis]
          Length = 1009

 Score = 1887 bits (4887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 894/1011 (88%), Positives = 952/1011 (94%), Gaps = 13/1011 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPMFHIGFMKTVL+IMR VCFNCSKILADEDD +FKQALKIRNPKNRLK+I DAC
Sbjct: 1    HLELAKPMFHIGFMKTVLAIMRCVCFNCSKILADEDDVRFKQALKIRNPKNRLKRIYDAC 60

Query: 142  KNKTKCEGGDEIDVPGQ-DGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
            K+K KC GGD+IDV GQ D +EP+KK++GGCGAQQP +TI+GMKM+AEYKA +KK+DD E
Sbjct: 61   KSKKKCAGGDDIDVQGQQDSDEPVKKSRGGCGAQQPNITIDGMKMVAEYKATKKKSDDPE 120

Query: 201  QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP---------- 250
            QLPEPVERKQ L+AERVL VLKRISDEDC LLGLNPKYARPDWMILQVLP          
Sbjct: 121  QLPEPVERKQQLSAERVLSVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRPSV 180

Query: 251  IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPG 310
            +     R  DDLTHQLAMIIRHNENLRRQERNGAPAHII+EFAQLLQFHIATYFDNELPG
Sbjct: 181  MMDTSARSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNELPG 240

Query: 311  QPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSI 370
            QPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPWSI
Sbjct: 241  QPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSI 300

Query: 371  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 430
            ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHHLE
Sbjct: 301  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHHLE 360

Query: 431  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 490
            LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM
Sbjct: 361  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 420

Query: 491  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
            NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM
Sbjct: 421  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 480

Query: 551  NILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGD 610
            NILMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQINL R +AWH++++ G +T GD
Sbjct: 481  NILMWWEDFDGKVPTPAILKPRPLWTGKQVFNLIIPKQINLSRASAWHSESETGFITPGD 540

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
            T VRIEKGELL+GTLCKKTLGTSTGSLIHVIW  VGPDAARKFLGHTQWLVNYWLLQNAF
Sbjct: 541  TQVRIEKGELLTGTLCKKTLGTSTGSLIHVIW--VGPDAARKFLGHTQWLVNYWLLQNAF 598

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDTIADA TME IN+TISKAKN+VK+LIK AQDK LEPEPGRTMMESFEN+VNQVL
Sbjct: 599  SIGIGDTIADAATMEKINETISKAKNDVKDLIKLAQDKQLEPEPGRTMMESFENRVNQVL 658

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF+ R
Sbjct: 659  NKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFIGR 718

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF+AMGGREGLIDTAVKTSETGYIQRRLV
Sbjct: 719  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFYAMGGREGLIDTAVKTSETGYIQRRLV 778

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK EF+  +R+E+D
Sbjct: 779  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFNNVYRYEID 838

Query: 911  EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLK 970
            +  W+P+YML E+++DLKTI E R+VFDAEVQKLEADR+QL T+IAT+GD++WP+PVNLK
Sbjct: 839  DNQWDPSYMLPEHVEDLKTIPEFRNVFDAEVQKLEADRFQLGTDIATTGDNTWPMPVNLK 898

Query: 971  RLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 1030
            RLIWNAQKTFKVDPRRPSDMHPME+VEAVDKLQE+L+VVPG+D LS+EAQKNATL FNIL
Sbjct: 899  RLIWNAQKTFKVDPRRPSDMHPMEIVEAVDKLQEKLRVVPGDDFLSMEAQKNATLLFNIL 958

Query: 1031 LRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            LRSTFASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 959  LRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1009


>gi|312076520|ref|XP_003140898.1| DNA-directed RNA polymerase II largest subunit [Loa loa]
          Length = 1875

 Score = 1885 bits (4884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1061/1846 (57%), Positives = 1326/1846 (71%), Gaps = 120/1846 (6%)

Query: 10   AEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
            A +  V+ VQFGILSPDEI++MS+ +IE  E  E GKPK GGL DPR G +DR+ +C TC
Sbjct: 10   APLRTVKRVQFGILSPDEIKRMSIGEIEFSEIYENGKPKLGGLMDPRQGVVDRRGRCMTC 69

Query: 70   TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK--I 127
              ++A+CPGHF H+ELAKP+FHIGF+   L ++R VCF CS+++ D+D  + K+ LK   
Sbjct: 70   AGSLADCPGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKDSPRVKELLKKTA 129

Query: 128  RNPKNRLKKILDACKNKTKCEGGDEID-VPGQDGEEPLKKNK-GGCGAQQPKLTIEGMKM 185
             N + RL  I + CK+KT CEGGDE+  V G+DGEE  K+ K GGCG  QP     G+ +
Sbjct: 130  GNARRRLTVIYEICKSKTVCEGGDELHTVGGEDGEESEKEIKSGGCGRYQPSYKRVGIDI 189

Query: 186  IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
            IAE+K  +  N+D +      ERK  LTAER L + K ISD DC +LG++P+YARPDWMI
Sbjct: 190  IAEWK--KHINEDTQ------ERKIVLTAERALEIFKSISDSDCLILGMDPRYARPDWMI 241

Query: 246  LQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
             QV+P+PP  VRP+          DDLTH+L+ I++ N  L+R E NGA AH+++E  +L
Sbjct: 242  AQVIPVPPLTVRPAVVTFGSARNQDDLTHKLSDIVKTNNQLKRNEANGAAAHVLAEDVKL 301

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQ+H+AT  DN +PG P ATQ+ GRP+KSI  RLK KEGRIRGNLMGKRVDFSARTVITP
Sbjct: 302  LQYHVATLIDNSIPGLPAATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITP 361

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP + ID +GVP +IA N+T+PE VTP+NI++L+ELV  G    PG   AKYIIR++G R
Sbjct: 362  DPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELVNRGDSQYPG---AKYIIRENGAR 418

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
            +DLRY  +++D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGH++KI+P+STFRLNL
Sbjct: 419  VDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHKVKILPWSTFRLNL 478

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            SVT+PYNADFDGDEMN+H+PQS ET+AEV E+ MVP+ +++PQ+N+PVMGIVQDTL   R
Sbjct: 479  SVTTPYNADFDGDEMNLHLPQSLETKAEVSEIAMVPRQLITPQANKPVMGIVQDTLTAVR 538

Query: 536  KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
             +TKRD FIE    M++LM   ++DGKVPQP ILKP+PLWTGKQVF LIIP  +N+ RT 
Sbjct: 539  MMTKRDVFIELPRMMDLLMQMPNWDGKVPQPAILKPKPLWTGKQVFTLIIPGNVNVLRTH 598

Query: 596  AWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 651
            + H D+ D G    ++ GDT V IE GELLSG +C +T+G S G+L+HV+  E+G + A 
Sbjct: 599  STHPDDEDNGPYKWISPGDTKVIIEHGELLSGIICSRTIGRSAGNLLHVVTLELGWEVAA 658

Query: 652  KFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711
             F  H Q +VN WL+    +IGIGDTIAD  T   I +TI KAK +V  +I++A +  LE
Sbjct: 659  HFYSHIQTVVNAWLVAEGHTIGIGDTIADQATYRDIQETIRKAKLDVVEVIEKAHNDELE 718

Query: 712  PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 771
            P PG T+ ++FEN VN++LN ARD  G SAQ+SLSE NN KAMV AGSKGS INISQ+ A
Sbjct: 719  PTPGNTLRQTFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIA 778

Query: 772  CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 831
            CVGQQNVEGKRIPFGF  RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREG
Sbjct: 779  CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREG 838

Query: 832  LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL 891
            LIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNSLG ++Q  YGEDG+D +W+E+Q++
Sbjct: 839  LIDTAVKTAETGYIQRRLIKAMESVMVSYDGTVRNSLGQLVQLRYGEDGLDGMWVENQSM 898

Query: 892  DSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL 951
             S+K   + F+K F+ ++ +E        +  + +L+   E     +AE  +LE DR  L
Sbjct: 899  PSMKPTNALFEKEFKLDLSDEKSLRKLYTENVVRELQGSAEALKEVEAEWAQLEEDRRLL 958

Query: 952  AT----EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1007
                   I   GD+   LP NL+R+IWNAQK F+V+ R+P+D++P+ V+E V +L ++L 
Sbjct: 959  RKIFPKAIHLLGDAKIVLPCNLQRMIWNAQKIFRVELRKPTDLNPLRVIEGVKELSKKLV 1018

Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            +V GED +S +AQ NATL  NILLRST  +KR+ ++HRL  E FEW+IGEIESRF Q++V
Sbjct: 1019 IVSGEDRISKQAQYNATLLMNILLRSTLCAKRMAEKHRLNSEGFEWLIGEIESRFKQAIV 1078

Query: 1068 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1127
             PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+KK KTPSL+V
Sbjct: 1079 QPGEMVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTV 1138

Query: 1128 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1187
            FL+       E+AK+V C LE+TTLR VT  T ++YDPDP  T+IEED E+V  +YEMPD
Sbjct: 1139 FLQGIAAKDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPKNTVIEEDQEWVNIFYEMPD 1198

Query: 1188 EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1247
             D  P + SPWLLRIEL+R  M DKKL+M A+A+KI+Q F DDL  I+ DDNA+KL+ R+
Sbjct: 1199 FD--PSRCSPWLLRIELDRRRMTDKKLTMEAIADKIHQGFGDDLNVIYTDDNAEKLVFRL 1256

Query: 1248 RIMNDEAPKGELND--ESAEDDVFLKKIESNMLTEMALRGVN------------------ 1287
            RI N E+ KG  ++  E  EDDVFL+ IE+NML+++ L+G+                   
Sbjct: 1257 RITNQESDKGNEDEQVERMEDDVFLRCIETNMLSDLTLQGIEAITKVYMHKPTTDDKKRV 1316

Query: 1288 ----------------------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLD 1325
                                  L  V+  ++VD  RTTSN + EI EVLGIEAVR+A+  
Sbjct: 1317 VITPDGGFKAIPEWLLETDGTALAKVLSEQNVDPVRTTSNDICEIFEVLGIEAVRKAIER 1376

Query: 1326 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1385
            E+  VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR + G +MRCSFEET DIL+
Sbjct: 1377 EMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETADILM 1436

Query: 1386 DAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEG---LEF 1442
            +AAV AE D ++GV+ENIMLGQLA  GTG   L L+ +  K A+E+Q    + G   + F
Sbjct: 1437 EAAVHAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADKCKLAMEIQTGGGLLGTGGMYF 1496

Query: 1443 GMTPARSPVSG----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPT--SSP 1496
            G + + +  +     TP++ G  +P Y        SP T +  +P  GG  FSP+  S  
Sbjct: 1497 GSSMSPASSAMSPAQTPWNAGT-TPAY----GAAWSPATGSGMTP--GGAGFSPSGHSEG 1549

Query: 1497 GYSP--------------SSPGYSPSSPG-YSPTSPGYSPTSPGYSPTSPGYSPTSPT-- 1539
            G+SP              S  G SPS  G YSP +  Y     G S  SPGYSPTSP   
Sbjct: 1550 GFSPYGGSGSWSPGSPGGSLGGMSPSGAGAYSPAASDYGSGLEGLS--SPGYSPTSPASP 1607

Query: 1540 YSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1599
            Y  SSP Y   SP YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP YSPT
Sbjct: 1608 YGASSPAYGVMSPRYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPGYSPT 1667

Query: 1600 SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1659
            SPSYSPTSP+YSPTSP+YSP SP YSP+SP YSPTSP+YSPTSP+YSPTSP+YSPTSP+Y
Sbjct: 1668 SPSYSPTSPSYSPTSPSYSPASPGYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTY 1727

Query: 1660 SPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY--------SPSS 1711
            SPTSP+YSP SPGYSP+SP YSPTSPTYSPTSP+Y+P S +YSPS           +PSS
Sbjct: 1728 SPTSPSYSPASPGYSPSSPRYSPTSPTYSPTSPAYSPSSPQYSPSSPQYSPSSPQYTPSS 1787

Query: 1712 PRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAG 1757
            P    +  YSPTSP YSP+S  YSP+SP YSP+SP YSPSSP  AG
Sbjct: 1788 PVGDASPAYSPTSPQYSPSSPRYSPSSPQYSPTSPQYSPSSPGGAG 1833


>gi|33326217|gb|AAQ08518.1| RNA polymerase II largest subunit [Amborella trichopoda]
          Length = 1013

 Score = 1884 bits (4881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 887/1013 (87%), Positives = 949/1013 (93%), Gaps = 13/1013 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPMFHIGF+KTVLS+MR VCFNCS+ILADE+DH+FKQALKIRNPK RLKK+LD C
Sbjct: 1    HLELAKPMFHIGFLKTVLSVMRCVCFNCSRILADEEDHRFKQALKIRNPKTRLKKVLDCC 60

Query: 142  KNKTKCEGGDEIDV-PGQDGEEPLKKNK-GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            KNKTKCEGGD+ID    QD EE +KK + GGCGAQQPK+TIEG KM+AEYKA RKKND+Q
Sbjct: 61   KNKTKCEGGDDIDEDQAQDSEEVVKKKRHGGCGAQQPKITIEGTKMVAEYKAPRKKNDEQ 120

Query: 200  EQ-LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP-------- 250
            EQ LPEPVERKQ L AE+VL VLKRI+DEDCQLLGLNPKYARPDWMILQV+P        
Sbjct: 121  EQMLPEPVERKQQLAAEKVLNVLKRITDEDCQLLGLNPKYARPDWMILQVMPIPPPPVRP 180

Query: 251  --IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
              +     R  DDLTHQLAM+IRHNENL+RQE+NGAPAHIISEFAQLLQFH+ATYFDNEL
Sbjct: 181  SVMMDTSSRSEDDLTHQLAMVIRHNENLKRQEKNGAPAHIISEFAQLLQFHVATYFDNEL 240

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
            PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPW
Sbjct: 241  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPW 300

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKS DHH
Sbjct: 301  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSGDHH 360

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            LELGYKVERHLNDGDFV FNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD
Sbjct: 361  LELGYKVERHLNDGDFVFFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 420

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV
Sbjct: 421  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 480

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
            FMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQINL R +AWH++++ G +T 
Sbjct: 481  FMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLIRYSAWHSESESGFITP 540

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            GDT VRIE+GELLSGTLCKKTLGTS+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 
Sbjct: 541  GDTCVRIERGELLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQ 600

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
            AFSIGIGDTIADA TME IN+TISKAKN VK LIK AQ+K LE EPGRTMMESFEN+VNQ
Sbjct: 601  AFSIGIGDTIADAATMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQ 660

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
            VLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 
Sbjct: 661  VLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFN 720

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
            DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR
Sbjct: 721  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 780

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMK++EF+  +++E
Sbjct: 781  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRAEFENVYKYE 840

Query: 909  MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
            +D+ENW+P+YML E+++DLKTI+E ++VFDAEVQKLEADR+QL TEI T+GD+SWP+PVN
Sbjct: 841  IDQENWSPSYMLPEHVEDLKTIREFQNVFDAEVQKLEADRHQLGTEITTTGDNSWPMPVN 900

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            LKRLIWNAQK FKVD RRPSDMHPME+VEAVDKLQERLKVVPG+D +S+EAQKNATLFFN
Sbjct: 901  LKRLIWNAQKMFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFN 960

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            ILLRSTFASKRVLKE+RLTREAF+WVIGEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 961  ILLRSTFASKRVLKEYRLTREAFDWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1013


>gi|33326203|gb|AAQ08511.1| RNA polymerase II largest subunit [Zamia muricata]
          Length = 1013

 Score = 1884 bits (4880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 888/1013 (87%), Positives = 953/1013 (94%), Gaps = 13/1013 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPM+HIGFMKTVLSI+RSVCF+CS+ILADE+DH+FKQALKI+NPK+RL+K+LD C
Sbjct: 1    HLELAKPMYHIGFMKTVLSILRSVCFDCSRILADEEDHRFKQALKIKNPKHRLRKVLDCC 60

Query: 142  KNKTKCEGGDEI-DVPGQDGEEPLKKNK-GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            KNK KCEGGDEI D   QDGEE  KK + GGCGAQQPK++I+GMK+IAEYKA RKK D+Q
Sbjct: 61   KNKVKCEGGDEIEDDQAQDGEETAKKKRHGGCGAQQPKISIDGMKIIAEYKATRKKADEQ 120

Query: 200  EQL-PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRP 258
            EQL PEPVERKQ L+AE+VL +LKRISDEDCQLLGLNPKYARPDWMILQVLPIP PPVRP
Sbjct: 121  EQLMPEPVERKQQLSAEKVLDILKRISDEDCQLLGLNPKYARPDWMILQVLPIPSPPVRP 180

Query: 259  S----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
            S          DDLTHQLAMIIRHNENLRRQERNGAPAHII+EFAQLLQFHIATYFDN+L
Sbjct: 181  SVMMNTTARSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNDL 240

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
            PGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSARTVITPDP INIDQLGVPW
Sbjct: 241  PGQPRATQRSGRPIKSICNRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPW 300

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIALNLTYPETVTPYNIERLKELV+ GPHPPPGKTGA+YIIRDDGQRLDLRYLKKSSDHH
Sbjct: 301  SIALNLTYPETVTPYNIERLKELVDNGPHPPPGKTGARYIIRDDGQRLDLRYLKKSSDHH 360

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD
Sbjct: 361  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 420

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV
Sbjct: 421  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 480

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
            FMNILMWWEDFDGK+P PTILKPRPLWTGKQVFNLIIP+QINL R +AWH++++ G +T 
Sbjct: 481  FMNILMWWEDFDGKIPSPTILKPRPLWTGKQVFNLIIPRQINLIRYSAWHSESETGFITP 540

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            GDT+VRIEKGE+LSGTLCKKTLGTS+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 
Sbjct: 541  GDTVVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQ 600

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDTIADA TMETIN+TISKAKN V +LI+ A  K+LE  PGRTMMESFEN+VNQ
Sbjct: 601  GFSIGIGDTIADAATMETINETISKAKNEVNHLIQLAHQKALEAXPGRTMMESFENRVNQ 660

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
            VLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG  
Sbjct: 661  VLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGLF 720

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             R+LPHFT+DDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR
Sbjct: 721  GRSLPHFTRDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 780

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMK+ EF+  +R+E
Sbjct: 781  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRPEFENVYRYE 840

Query: 909  MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
            +D ENWNP+YML E+++DLKTI+E ++VFDAEVQKLEADR QL TEIA SGD+SWP+PVN
Sbjct: 841  IDNENWNPSYMLPEHVEDLKTIREFQNVFDAEVQKLEADRRQLGTEIAPSGDNSWPMPVN 900

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            LKRLIWNAQKTFK+D R+PSDMHPME+VEAVDKLQERLKVVPG+D +S+EAQKNATLFFN
Sbjct: 901  LKRLIWNAQKTFKIDLRKPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFN 960

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            ILLRSTFASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 961  ILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1013


>gi|33326211|gb|AAQ08515.1| RNA polymerase II largest subunit [Zea mays]
          Length = 1009

 Score = 1884 bits (4879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 887/1010 (87%), Positives = 947/1010 (93%), Gaps = 11/1010 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPMFHIGF+KTVLSIMR VCFNCSKILADED+ KFKQALKIRNPKNRLK+I DAC
Sbjct: 1    HLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETKFKQALKIRNPKNRLKRIYDAC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            K+K  C GGD++DV  QD +EP+KK +GGCGAQQP +T++GMKM+AE+KA +KK DDQ+Q
Sbjct: 61   KSKKVCAGGDDLDVQEQDTDEPIKK-RGGCGAQQPNITVDGMKMVAEFKAPKKKTDDQDQ 119

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP----------I 251
            LPEPVERKQ L+AERVL VLKRISDEDC LLGLNPKYARPDWMILQVLP          +
Sbjct: 120  LPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYARPDWMILQVLPVPPPPVRPSVM 179

Query: 252  PPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 311
                 R  DDLTHQLAMIIRHNENLRRQERNGAPAHII+EFAQLLQFHIATYFDN+LPGQ
Sbjct: 180  MDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNDLPGQ 239

Query: 312  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 371
            PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INID+LGVPWSIA
Sbjct: 240  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPWSIA 299

Query: 372  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL 431
            LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRY+KKSSD HLEL
Sbjct: 300  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYVKKSSDQHLEL 359

Query: 432  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 491
            GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN
Sbjct: 360  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 419

Query: 492  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 551
            MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT IEKDVFMN
Sbjct: 420  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTLIEKDVFMN 479

Query: 552  ILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDT 611
            ILMWW+DFDGK+P PTILKPRP+WTGKQVFNLIIPKQINL R +AWH++ +KG +T GDT
Sbjct: 480  ILMWWQDFDGKIPAPTILKPRPIWTGKQVFNLIIPKQINLIRFSAWHSEEEKGFITPGDT 539

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
            +VRIEKGELLSGTLCKK+LGT +GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FS
Sbjct: 540  MVRIEKGELLSGTLCKKSLGTGSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFS 599

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDTIADA TMETINDTISKAKN VK LIK+A +K LE EPGRTMMESFEN+VNQVLN
Sbjct: 600  IGIGDTIADASTMETINDTISKAKNAVKELIKKAHEKQLEAEPGRTMMESFENRVNQVLN 659

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARD+AGSSAQ SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+DRT
Sbjct: 660  KARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRT 719

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK
Sbjct: 720  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 779

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK EFD  FR+E+D+
Sbjct: 780  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKPEFDNVFRYELDD 839

Query: 912  ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
            ENW PNYML E++DDLKTI+E R+VF+AEVQKLEADRYQL +EI T+GD+SWP+PVNLKR
Sbjct: 840  ENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQLGSEITTTGDNSWPMPVNLKR 899

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            LIWNAQKTFK+D RRPSDMHPME+VEA+DKLQERLKVVPG+D +S+EAQKNATLFFNILL
Sbjct: 900  LIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFFNILL 959

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            RSTFASKRVLKE+RLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 960  RSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1009


>gi|170587086|ref|XP_001898310.1| DNA-directed RNA polymerase II largest subunit [Brugia malayi]
 gi|158594705|gb|EDP33289.1| DNA-directed RNA polymerase II largest subunit, putative [Brugia
            malayi]
          Length = 1943

 Score = 1883 bits (4878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1053/1845 (57%), Positives = 1318/1845 (71%), Gaps = 123/1845 (6%)

Query: 10   AEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
            A +  V+ VQFGILSPDEI++MS+ +IE  E  E GKPK GGL DPR G +DR+ +C TC
Sbjct: 83   APLRTVKRVQFGILSPDEIKRMSIGEIEFSEIYENGKPKLGGLMDPRQGVVDRRGRCMTC 142

Query: 70   TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK--I 127
              ++A+CPGHF H+ELAKP+FHIGF+   L ++R VCF CS+++ D+D  + K+ L+   
Sbjct: 143  AGSLADCPGHFAHIELAKPVFHIGFLSKTLKLLRCVCFYCSRLMVDKDSPRVKELLRKTA 202

Query: 128  RNPKNRLKKILDACKNKTKCEGGDEID-VPGQDGEEPLKKNK-GGCGAQQPKLTIEGMKM 185
             N + RL  I + CK+KT CEGG+E+  V G+DGEE  ++ K GGCG  QP     G+ +
Sbjct: 203  GNARRRLAVIYEICKSKTVCEGGNELHAVGGEDGEESEREIKSGGCGRYQPSYKRVGIDI 262

Query: 186  IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
            IAE+K  +  N+D +      ERK  LTAER L + K ISD DC +LG++P+YARPDWMI
Sbjct: 263  IAEWK--KHINEDTQ------ERKIVLTAERALEIFKSISDSDCLILGMDPRYARPDWMI 314

Query: 246  LQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
             QV+P+PP  VRP+          DDLTH+L+ +++ N  L+R E NGA AH+++E  +L
Sbjct: 315  AQVIPVPPLAVRPAVVTFGSARNQDDLTHKLSDVVKTNNQLKRNEANGAAAHVLAEDVKL 374

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQ+H+AT  DN +PG P ATQ+ GRP+KSI  RLK KEGRIRGNLMGKRVDFSARTVITP
Sbjct: 375  LQYHVATLIDNSIPGLPAATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITP 434

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP + ID +GVP +IA N+T+PE VTP+NI++L+ELV  G    PG   AKYIIR++G R
Sbjct: 435  DPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDKLQELVNRGDSQYPG---AKYIIRENGAR 491

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
            +DLRY  +++D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGH++KI+P+STFRLNL
Sbjct: 492  VDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHKVKILPWSTFRLNL 551

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            SVT+PYNADFDGDEMN+H+PQS ET+AEV E+ MVP+ +++PQ+N+PVMGIVQDTL   R
Sbjct: 552  SVTTPYNADFDGDEMNLHLPQSLETKAEVSEIAMVPRQLITPQANKPVMGIVQDTLTAVR 611

Query: 536  KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
             +TKRD FIE    M++LM   ++DGKVPQP ILKP+PLWTGKQVF LIIP  +N+ RT 
Sbjct: 612  MMTKRDVFIELPRMMDLLMQMPNWDGKVPQPAILKPKPLWTGKQVFTLIIPGNVNVLRTH 671

Query: 596  AWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 651
            + H D+ D G    ++ GDT V IE GELLSG +C +T+G S G+L+HV+  E+G + A 
Sbjct: 672  STHPDDEDNGPYKWISPGDTKVIIEHGELLSGIICSRTIGRSAGNLLHVVTLELGWEVAA 731

Query: 652  KFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711
             F  H Q +VN WLL    +IGIGDTIAD  T   I +TI KAK +V  +I++A +  LE
Sbjct: 732  HFYSHIQTVVNAWLLAEGHTIGIGDTIADQATYRDIQETIRKAKLDVVEVIEKAHNDELE 791

Query: 712  PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 771
            P PG T+ ++FEN VN++LN ARD  G SAQ+SLSE NN KAMV AGSKGS INISQ+ A
Sbjct: 792  PTPGNTLRQTFENMVNRILNDARDRTGGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIA 851

Query: 772  CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 831
            CVGQQNVEGKRIPFGF  RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREG
Sbjct: 852  CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREG 911

Query: 832  LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL 891
            LIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNSLG ++Q  YGEDG+D +W+E+Q++
Sbjct: 912  LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLGQLVQLRYGEDGLDGMWVENQSM 971

Query: 892  DSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL 951
             S+K   + F+K F+ ++ +E        +  + +L+   E     +AE  +LE DR +L
Sbjct: 972  PSMKPTNALFEKEFKLDLSDEKSLRKLYTENVVRELQGSAEALKEVEAEWGQLEEDR-RL 1030

Query: 952  ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG 1011
              +I   GD+   LP NL+R+IWNAQK F+V+ R+P+D++P+ V+E V +L ++L +V G
Sbjct: 1031 LRKIFPKGDAKIVLPCNLQRMIWNAQKIFRVELRKPTDLNPLRVIEGVKELSKKLVIVSG 1090

Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
            ED +S +AQ NATL  NILLRST  +KR+ ++HRL  E FEW+IGEIESRF Q++V PGE
Sbjct: 1091 EDRISKQAQYNATLLMNILLRSTLCAKRMAEKHRLNSEGFEWLIGEIESRFKQAIVQPGE 1150

Query: 1072 MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKP 1131
            M+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+KK KTPSL+VFL+ 
Sbjct: 1151 MVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLQG 1210

Query: 1132 GVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIA 1191
                  E+AK+V C LE+TTLR VT  T ++YDPDP  TIIEED E+V  +YEMPD D  
Sbjct: 1211 TAAKDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPKNTIIEEDQEWVNIFYEMPDFD-- 1268

Query: 1192 PEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMN 1251
            P + SPWLLRIEL+R  M DKKL+M A+A+KI+Q F DDL  I+ DDNA+KL+ R+RI N
Sbjct: 1269 PSRCSPWLLRIELDRRRMTDKKLTMEAIADKIHQGFGDDLNVIYTDDNAEKLVFRLRITN 1328

Query: 1252 DEAPKGELND--ESAEDDVFLKKIESNMLTEMALRGVN---------------------- 1287
             E  KG  ++  E  EDDVFL+ IE+NML+++ L+G+                       
Sbjct: 1329 QEGDKGNEDEQVERMEDDVFLRCIETNMLSDLTLQGIEAITKVYMHKPTTDDKKRVVITP 1388

Query: 1288 ------------------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
                              L  V+  ++VD  RTTSN + EI EVLGIEAVR+A+  E+  
Sbjct: 1389 DGGFKAIPEWLLETDGTALAKVLSEQNVDPIRTTSNDICEIFEVLGIEAVRKAIEREMNH 1448

Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
            VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR + G +MRCSFEETVDIL++AAV
Sbjct: 1449 VISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAV 1508

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQ---LPSYMEGLEFGMTP 1446
             AE D ++GV+ENIMLGQLA  GTG   L L+ +  K A+E+Q         G+ FG + 
Sbjct: 1509 HAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADKCKLAMEIQTGGGLLGTGGMYFGSSM 1568

Query: 1447 ARSPVSG----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSP-- 1500
            + +  +     TP++ G  +P Y        SP T +  +P  GG  FSP+   G+S   
Sbjct: 1569 SPASSAMSPAQTPWNAG-TTPAY----GAAWSPATGSGMTP--GGAGFSPS---GHSEGG 1618

Query: 1501 -----------------SSPGYSPSSPG-YSPTSPGYSPTSPGYSPTSPGYSPTSPT--Y 1540
                             S  G SPS  G YSP +  Y     G S  SPGYSPTSP   Y
Sbjct: 1619 FSPYGGGGSWSPGSPGGSLGGMSPSGAGAYSPAASDYGSGLEGLS--SPGYSPTSPASPY 1676

Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
              SSP Y   SP YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP YSPTS
Sbjct: 1677 GASSPAYGVMSPRYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPGYSPTS 1736

Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
            PSYSPTSP+YSPTSP+YSP SP YSP+SP YSPTSP+YSPTSP+YSPTSP+YSPTSP+YS
Sbjct: 1737 PSYSPTSPSYSPTSPSYSPASPGYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYS 1796

Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS--------YNPQSAKYSPSLAYSPSSP 1712
            PTSP+YSP SPGYSP+SP YSPTSPTYSPTSP+                  S  Y+PSSP
Sbjct: 1797 PTSPSYSPASPGYSPSSPRYSPTSPTYSPTSPAYSPSSPQYSPSSPQYSPSSPQYTPSSP 1856

Query: 1713 RLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAG 1757
                +  YSPTSP YSP+S  YSP+SP YSP+SP YSPSSP  AG
Sbjct: 1857 AGDASPAYSPTSPQYSPSSPRYSPSSPQYSPTSPQYSPSSPGGAG 1901


>gi|281203888|gb|EFA78084.1| RNA polymerase II largest subunit [Polysphondylium pallidum PN500]
          Length = 2159

 Score = 1881 bits (4873), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 944/1583 (59%), Positives = 1174/1583 (74%), Gaps = 106/1583 (6%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKC 66
            +S AEV KV+ VQFGILSP++IR MSV  +EH ET E GKPK GGL DP +GTID+  KC
Sbjct: 6    HSTAEVRKVKRVQFGILSPEDIRDMSVALVEHPETYENGKPKIGGLVDPHMGTIDKTQKC 65

Query: 67   ETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK 126
             TC+  MAECPGHFGH+ELAKP+FHIGF+ TVL I++ VC++CSK+L D DD  F+QALK
Sbjct: 66   ATCSGTMAECPGHFGHIELAKPVFHIGFINTVLKILKCVCYHCSKLLVDTDDIHFRQALK 125

Query: 127  IRNPKNRLKKILDACKNKTKCEGG-----DEIDVPGQDGEEPLKKNKG-GCGAQQPKLTI 180
            I+NPK RL  ++D CKNK  C        D++D   +  EE  +K K  GCG   PK+T 
Sbjct: 126  IKNPKRRLNAVVDICKNKKVCAVAKGNQEDQVDDLSKTDEELDRKPKADGCGNVLPKITK 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            E +K + E+K      D Q+   + VE+K  L+AERV  +LKRI D+D + +GLNP++AR
Sbjct: 186  EELKFVVEFK------DVQD---DTVEKKSVLSAERVHSILKRIRDDDARAMGLNPEWAR 236

Query: 241  PDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWM++ VLP          +     R  DDLTH+LA I++ N  LR+QE+NGAPAHII+
Sbjct: 237  PDWMVITVLPVPPPPVRPSIMMDTASRGEDDLTHKLADIVKANRELRKQEKNGAPAHIIT 296

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  Q LQFH+ATY DNE+PG P+A QRSGRP+KSI  RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 297  EATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSAR 356

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVIT DP ++IDQ+GVP SIALNLTYPETVTP+NI+R++EL+  GP+  PG   AKYIIR
Sbjct: 357  TVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDRMRELIRNGPNEHPG---AKYIIR 413

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            +DG R DLR++KK +D HLE GYKVERH+ DGD V+FNRQPSLHKMS+MGHRIK+MPYST
Sbjct: 414  EDGTRFDLRFVKKITDTHLECGYKVERHIQDGDVVIFNRQPSLHKMSMMGHRIKVMPYST 473

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE++E+MMVP+ IVSPQSNRPVMGIVQDT
Sbjct: 474  FRLNLSVTSPYNADFDGDEMNLHVPQSLETRAEIIEIMMVPRQIVSPQSNRPVMGIVQDT 533

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            LLG  K TKRDTF+E+D+ MNILMW   +DGK+P P I KP+ LWTGKQ+F+LIIP  IN
Sbjct: 534  LLGSMKFTKRDTFVERDLMMNILMWLPSWDGKIPPPAIWKPKKLWTGKQLFSLIIP-NIN 592

Query: 591  LFRTAAWHADNDK-GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
            L R  + H+D +K     A DT+V I++GELL+G LCK++LG + GS+IHV+  E G D+
Sbjct: 593  LQRFGSTHSDKEKEKSEMAADTVVIIDQGELLTGILCKRSLGAANGSIIHVVMNEHGHDS 652

Query: 650  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
             R F+  TQ +VN+WL+ + F++GIGDTIADA TM  +   I+ AK  VK LI +AQ   
Sbjct: 653  CRLFIDQTQTVVNHWLINHGFTVGIGDTIADAATMSKVTSAIANAKTQVKELIIKAQSNQ 712

Query: 710  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
             E +PGR+M+ESFE +VN+VLNTARD+AG+SAQ+SL ESNN+KAMV AGSKGSFINISQM
Sbjct: 713  FECQPGRSMLESFEKEVNRVLNTARDDAGTSAQRSLQESNNVKAMVNAGSKGSFINISQM 772

Query: 770  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
             ACVGQQNVEGKR+PFGF +RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 773  MACVGQQNVEGKRVPFGFQNRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 832

Query: 830  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
            EGLIDTAVKTSETGYIQRRLVKAMED+ VKYD TVRNSLGDVIQF YGEDG+DS ++E+Q
Sbjct: 833  EGLIDTAVKTSETGYIQRRLVKAMEDVSVKYDATVRNSLGDVIQFAYGEDGLDSCFVENQ 892

Query: 890  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRY 949
              DSLK    +F K ++ ++D  ++   ++    I++++    +R+  D E +++E DR 
Sbjct: 893  MFDSLKRDNQDFIKLYKHQIDRSDYGDGWINPLIIEEIRNDSTIRETLDREFKRIEFDRN 952

Query: 950  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1009
             L TEI  +G++SWPLPVNL+R+I NA K F +D R  SD++P  VV +++ L  RLK++
Sbjct: 953  LLRTEIIPTGEASWPLPVNLRRMIINAHKQFGIDHRTISDLNPAHVVNSIEGLISRLKII 1012

Query: 1010 PG-----EDPLSVEA----QKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
                   ED +  +A     +NATL F+ILLRST +SKRVL+E RL  +AF W++GE+ES
Sbjct: 1013 AQIDASEEDTIYSQAWSETHQNATLLFSILLRSTLSSKRVLEEFRLNEKAFNWMVGEVES 1072

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            +FL S+V PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN+AK +
Sbjct: 1073 KFLLSIVNPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKTV 1132

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            KTPSL+++L+P      E+AK+VQC LEYTT+ +VT ATE++YDPDP  T+++ED EFV 
Sbjct: 1133 KTPSLTIYLQPDAAKDSEKAKSVQCQLEYTTMATVTAATEIYYDPDPQQTLVKEDEEFVS 1192

Query: 1181 SYYEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
             Y  +PD+D  A + +SPW+LRIEL+REM+ DKKLS++ + + I ++F   L CIF+DDN
Sbjct: 1193 RYLLLPDDDTKADDVLSPWVLRIELDREMVTDKKLSLSDITQCIKRDF-GRLNCIFSDDN 1251

Query: 1240 ADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMAL---------------- 1283
            ADKLI+RIR + D   K + ND   +DD FL++IE+ ML+EM L                
Sbjct: 1252 ADKLIIRIRTIEDNDSKTDGND---DDDTFLRRIEAKMLSEMVLCGIRGIKKVFMRHDDQ 1308

Query: 1284 -------------------RGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                                GVNLL VM H DVD  RT SN +IEII+VLGIEAVR ALL
Sbjct: 1309 VRVNENGAYFSKKEWVLDTDGVNLLEVMSHPDVDHSRTVSNDIIEIIQVLGIEAVRNALL 1368

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
             ELR VISFDGSYVNYRHLAIL D MTYRGHLMAI+RHGINR ++GP+MRCSFEETV+IL
Sbjct: 1369 KELRAVISFDGSYVNYRHLAILADVMTYRGHLMAISRHGINRVESGPLMRCSFEETVEIL 1428

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQL--PSYMEGLEF 1442
            +DAA+F+E+D ++GVTENI+LGQL P+GTG   +YLN +M+KNA  + +  PS M     
Sbjct: 1429 MDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVYLNQDMIKNAHSIAMPEPSTM----- 1483

Query: 1443 GMTPARSPVSGTPYHDGMMSPGYL-FSPNLRLSPVTDAQFSP----YVGGMAFSPTSSPG 1497
             M+    P S TP HDG  +P +  FSP        DA FSP    Y G   FSP+ SP 
Sbjct: 1484 -MSHYNEPGSQTPSHDGGSTPYHHPFSP-------LDAPFSPFNEQYRGD--FSPSYSPA 1533

Query: 1498 YSPSSPGYSPSSPGYSPTSPGYS 1520
               SS G+S     Y P SP Y+
Sbjct: 1534 RGSSSGGFS-----YFPASPNYN 1551


>gi|328867419|gb|EGG15801.1| RNA polymerase II largest subunit [Dictyostelium fasciculatum]
          Length = 1701

 Score = 1879 bits (4868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 935/1558 (60%), Positives = 1155/1558 (74%), Gaps = 106/1558 (6%)

Query: 31   MSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMF 90
            MSV  IEH ET E GKPK GGL DP +GTID+  KC TC+  MAECPGHFGHLELAKP+F
Sbjct: 1    MSVALIEHPETYENGKPKLGGLVDPHMGTIDKHQKCATCSGTMAECPGHFGHLELAKPVF 60

Query: 91   HIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGG 150
            HIGF+ TVL I+R VCF+CSK+L D +D  F+QALKIRNPK RL  ILD CK K  C+ G
Sbjct: 61   HIGFIDTVLKIVRCVCFHCSKLLTDTNDSHFRQALKIRNPKRRLNAILDICKTKKVCDIG 120

Query: 151  DEIDVPGQDGEEPLKK----------NKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
             E     +D E  L K          + GGCG  QPK+T E +K I E+K         +
Sbjct: 121  QE----EKDREHDLSKTDEELDRKPHSHGGCGNLQPKITKEELKFIVEFK---------D 167

Query: 201  QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP---------- 250
               E VE+K  L+AERV  +LKRISD+D + +GLNP +ARPDWM++ VLP          
Sbjct: 168  VADETVEKKSILSAERVHNILKRISDDDARSMGLNPDWARPDWMVVTVLPVPPPPVRPSI 227

Query: 251  IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPG 310
            +     R  DDLTH+LA I++ N  L++QE+NG PAHII+E  Q LQFH+ATY DNE+PG
Sbjct: 228  MMDTASRGEDDLTHKLADIVKANRELKKQEKNGVPAHIITEATQFLQFHVATYVDNEIPG 287

Query: 311  QPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSI 370
             P+A QRSGRP+KSI  RLK KEGRIRGNLMGKRVDFSARTVIT DP ++IDQ+GVP SI
Sbjct: 288  LPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSI 347

Query: 371  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 430
            ALNLTYPETVTP+NI+R++EL+  GP   PG   AKY+IR+DGQR DLR++KK +D HLE
Sbjct: 348  ALNLTYPETVTPFNIDRMRELIRRGPDEHPG---AKYVIREDGQRFDLRFVKKLTDTHLE 404

Query: 431  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 490
            +GYKVERH+ DGD V+FNRQPSLHKMS+MGHRIK+MPYSTFRLNLSVT+PYNADFDGDEM
Sbjct: 405  VGYKVERHVQDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTTPYNADFDGDEM 464

Query: 491  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
            N+HVPQ+ ETRAEV+E+MMVP+ IVSPQSNRPVMGIVQD+LLG R  TKRDTFIE+D+ M
Sbjct: 465  NLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDSLLGSRLFTKRDTFIERDLMM 524

Query: 551  NILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK-GILTAG 609
            NILMW   +DGK+P P I KP+ LWTGKQ+F+LIIPK INL R  + H D +K     A 
Sbjct: 525  NILMWLPSWDGKIPPPAIWKPKKLWTGKQIFSLIIPK-INLTRFTSTHNDKEKEKSEMAS 583

Query: 610  DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
            DT+V I++GEL+SG LCK++LG++ GS+IHV+  E G +A R F+  TQ +VN WL+ + 
Sbjct: 584  DTVVIIDQGELMSGILCKRSLGSANGSIIHVVQNEHGHEATRCFIDQTQTVVNSWLISHG 643

Query: 670  FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
            F++GIGDTIAD+ TM  + + I+ AK  VK LI +AQ    E +PG++M+ESFE +VN+V
Sbjct: 644  FTVGIGDTIADSATMAKVQNAITSAKTQVKELIIKAQSNQFECQPGKSMLESFEKEVNRV 703

Query: 730  LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
            LNTARD+AG+SAQKSL ESNN+KAMV AGSKGSFINISQM ACVGQQNVEGKRIPFGF +
Sbjct: 704  LNTARDDAGTSAQKSLQESNNVKAMVNAGSKGSFINISQMMACVGQQNVEGKRIPFGFQN 763

Query: 790  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 849
            RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL
Sbjct: 764  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 823

Query: 850  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM 909
            VKAMED+ V+YD TVRNSLGDVIQF YGEDG+D   +E+Q+ DSLK   ++F K F+ ++
Sbjct: 824  VKAMEDVSVRYDATVRNSLGDVIQFAYGEDGLDGCSVETQSFDSLKKDNNDFVKMFKHQI 883

Query: 910  DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNL 969
            D  ++  ++M    +++++    +R+  D E ++LE DR+Q+ TEI  +G+SSWPLPVNL
Sbjct: 884  DRLDYGDSWMDPLVVEEIRNDATIRETLDREFKRLEFDRHQMRTEIIPTGESSWPLPVNL 943

Query: 970  KRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV------------ 1017
            KRLI NAQK F +D R  SD++P  VV A+D+L  RL++VP ++P+ +            
Sbjct: 944  KRLINNAQKIFSIDYRTISDLNPATVVTAIDRLISRLRIVPHQEPIGLSSEEELERQHYD 1003

Query: 1018 ----EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
                E  +NAT+ F ILLRSTFAS+RVL E RLT +AFEWV GE+ES+F+ SL  PGEM+
Sbjct: 1004 KAWNETHQNATMLFAILLRSTFASRRVLDEFRLTSKAFEWVCGEVESKFMTSLANPGEMV 1063

Query: 1074 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGV 1133
            G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVAK +KTPSL+++L+P +
Sbjct: 1064 GALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAKNVKTPSLTIYLQPDI 1123

Query: 1134 NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE 1193
                E+AK+VQC LEYTT+  VT ATE++YDP+P  T+IEED+EFV  Y  +PDE+I   
Sbjct: 1124 ARDSEKAKSVQCQLEYTTMARVTAATEIYYDPEPNTTVIEEDLEFVTRYMMLPDEEINEG 1183

Query: 1194 KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDE 1253
             +SPWLLR+EL+REM+ DKKLS+  + + I ++F D L CIF+DDNADKLI+RIR + D 
Sbjct: 1184 ALSPWLLRVELDREMVTDKKLSLYEITQCIKKDF-DKLNCIFSDDNADKLIIRIRTIMDN 1242

Query: 1254 APKGELNDESAEDDVFLKKIESNMLTEMAL------------------------------ 1283
              K   ND   +DD FL+++ES ML++M L                              
Sbjct: 1243 ENKESAND---DDDTFLRRVESMMLSQMVLCGIPNIKKVFMRNDDRSMINPDTGAYYTKK 1299

Query: 1284 ------RGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSY 1337
                   GVNLL VM H DVD  RT SN ++EII+VLGIEAVR ALL ELR VISFDGSY
Sbjct: 1300 EWVLDTDGVNLLEVMSHPDVDFSRTVSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSY 1359

Query: 1338 VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLR 1397
            VNYRHLA+L D MTYRGHLMAITRHGINR ++GP+MRCSFEETV+IL++AA+F+E+D + 
Sbjct: 1360 VNYRHLAMLADVMTYRGHLMAITRHGINRVESGPLMRCSFEETVEILMEAALFSETDNIC 1419

Query: 1398 GVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYH 1457
            GVTENI+LGQL P+GTG   +YLN +M+KNA  + LP  M  + +  TP+ +    TP +
Sbjct: 1420 GVTENIILGQLPPLGTGSFEVYLNQDMIKNAHSISLPEPM-AITYPDTPSNTG-GQTPSY 1477

Query: 1458 DGMMSP-GYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 1514
            DG  +P  + FS         +A FSP+    A+    SP YSP+SPG   S+ GY P
Sbjct: 1478 DGGSTPYHHQFSS-------FEAPFSPF--NEAYRGDFSPSYSPNSPGRGGSASGYFP 1526


>gi|384253754|gb|EIE27228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Coccomyxa subellipsoidea C-169]
          Length = 1566

 Score = 1877 bits (4862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 930/1529 (60%), Positives = 1129/1529 (73%), Gaps = 113/1529 (7%)

Query: 60   IDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH 119
            +DR +KC T  AN  + PG+FGH+ELAKP+FHIG+ K ++ ++R V ++ SK+L D+DD 
Sbjct: 1    MDRAIKCTTDGANQQDSPGYFGHIELAKPVFHIGWTKELMRVLRCVSYHSSKLLVDKDDP 60

Query: 120  KFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
            KFKQ ++I+N + R + ++  C +K   E                       GA QP   
Sbjct: 61   KFKQVMRIKNGEARSRALVAVCGSKRFDEE---------------------TGAPQPAYK 99

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
             EG+  I   +     +D+   +   VER+Q +TAE+   +LKRISDEDC  LG NPKYA
Sbjct: 100  FEGLLRIMAERIFSSADDEDIDMGAEVERRQEITAEKAHEILKRISDEDCIALGYNPKYA 159

Query: 240  RPDWMILQVLP-----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            RPDW+++ V P           +     +  DDLTH+LA IIRHN  LR+ E NGAP HI
Sbjct: 160  RPDWLVMTVFPVPPPPVRPSVMMDSSARQVPDDLTHKLAEIIRHNNTLRKAEENGAPQHI 219

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            I ++ ++LQ  +ATY DN  PG P + QRSGR IKSI  RLK KEGR+RGNLMGKRVDFS
Sbjct: 220  IRQYVEVLQHDVATYIDNTKPGIPVSQQRSGRAIKSISQRLKGKEGRVRGNLMGKRVDFS 279

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVI+ DP I+ID+LGVPWSIALNLTYPETVTP+N + L++LVE GPHPP G+TGAKYI
Sbjct: 280  ARTVISGDPNISIDELGVPWSIALNLTYPETVTPHNYKWLQQLVENGPHPPAGQTGAKYI 339

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IR+DGQRLDLR+L+K SD HLE GYKVERHL +GD+VLFNRQPSLHKMS+MGH+++I+PY
Sbjct: 340  IREDGQRLDLRFLRKDSDRHLEFGYKVERHLVNGDYVLFNRQPSLHKMSMMGHKVRILPY 399

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSVTSPYNADFDGDEMNMHVPQ+ ETR E  E+MMVP+ IVSPQ+N+PV+GIVQ
Sbjct: 400  STFRLNLSVTSPYNADFDGDEMNMHVPQTPETRTETREIMMVPRNIVSPQANKPVIGIVQ 459

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTLLGCR +TKRDTFIEKD+FMNILMW ED+DGK+P P ILKP+PLWTGKQV+NL +P+ 
Sbjct: 460  DTLLGCRLMTKRDTFIEKDLFMNILMWLEDWDGKIPMPAILKPKPLWTGKQVYNLFMPR- 518

Query: 589  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            +N+ R +AW+ DN+    +  D+ V I+ GELL+GTLCKKTLG S GSLIHVIW E GP+
Sbjct: 519  VNIRRQSAWYKDNEPLDFSPSDSQVLIQNGELLTGTLCKKTLGASAGSLIHVIWMEEGPE 578

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
            AAR FL  +Q+  N+WLLQ+ FSIGIGDT+ADAKTM  I++TI++AK  VK L ++ Q++
Sbjct: 579  AARAFLSQSQYTTNHWLLQHGFSIGIGDTVADAKTMNIISETIAEAKEKVKLLTEKLQNR 638

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             LE  PG TMMESFE +VNQVLNTARD+AG  AQ SL ++NN+  MVTAGSKGSFINISQ
Sbjct: 639  DLEARPGMTMMESFEQQVNQVLNTARDDAGKLAQSSLDDTNNVVRMVTAGSKGSFINISQ 698

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            M ACVGQQNVEGKRIPFGF  RTLPHFTKDD GPESRGFVENSYLRGLTPQE FFHAMGG
Sbjct: 699  MIACVGQQNVEGKRIPFGFQRRTLPHFTKDDLGPESRGFVENSYLRGLTPQELFFHAMGG 758

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKTS TGYIQRRLVKAMED+M+KYDGTVR + G V+QFLYGEDGMD   IES
Sbjct: 759  REGLIDTAVKTSSTGYIQRRLVKAMEDLMIKYDGTVRTANGSVVQFLYGEDGMDGTAIES 818

Query: 889  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
            Q L+ L+M + +F   F  ++      P+++  E  + L+   E R + DAE ++LE D 
Sbjct: 819  QKLEHLRMTEEKFRNKFYLDVSPGRGTPDWLDPETAEQLRHSVEARQLLDAEYEQLETDL 878

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP--SDMHPMEVVEAVDKLQERL 1006
              L TE+  +GD+   LPVN KRLIWNAQ+ F   P RP  S ++P+EVV  V +LQ++L
Sbjct: 879  KTLRTEVMRTGDAGVQLPVNFKRLIWNAQQMFHCHPHRPGSSGLNPVEVVMRVRELQQKL 938

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             VV G D LS EAQ+NATL F   LR+TFASKRV+++++  REAF+W++GEIE+RF  +L
Sbjct: 939  IVVDGPDELSQEAQRNATLLFLSFLRATFASKRVIRDYKFNREAFDWILGEIETRFHAAL 998

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
              PGEMIG VAAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPRL EIIN+AK IKTPSL+
Sbjct: 999  AYPGEMIGTVAAQSIGEPTTQMTLNTFHFAGVSAKNVTLGVPRLTEIINIAKNIKTPSLT 1058

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL    +  +E AK VQC+LEYTTLR VT ATE++YDPDP  T+I+ED EFV++Y+EMP
Sbjct: 1059 VFLLGEASRDREAAKQVQCSLEYTTLRKVTGATEIYYDPDPTTTVIDEDREFVENYFEMP 1118

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            DED+   ++SPWLLRIELNR+MMVDKKLSM+ +AE+IN EF+D+LTCIFNDDNA KLILR
Sbjct: 1119 DEDMDVNRMSPWLLRIELNRDMMVDKKLSMSDIAERINSEFEDELTCIFNDDNAPKLILR 1178

Query: 1247 IRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR---------------------- 1284
            IR++NDE  K E   +S  DDVFL+KIE+ ML+++AL+                      
Sbjct: 1179 IRVLNDEGGK-EAEAQSETDDVFLRKIEATMLSQVALQGIPDIHKVSLRESKRIVPSSDA 1237

Query: 1285 ---------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
                           GVNL  VMCH DVD RRT SNHL+EIIEVLGIEA R ALL E+R 
Sbjct: 1238 PDGYTNDSEWVLDTEGVNLSEVMCHPDVDYRRTISNHLVEIIEVLGIEAARNALLKEMRG 1297

Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
            VI FDGSYVNYRHLA L D+MT RGH MAITRHGINR + GP+ +CSFEETVDIL  AA 
Sbjct: 1298 VIEFDGSYVNYRHLAALVDSMTSRGHFMAITRHGINRQENGPLAQCSFEETVDILFRAAA 1357

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARS 1449
            F+E D++ GV+ENIMLGQLAP+GTG   L L++  L +AIEL+  +       G TP   
Sbjct: 1358 FSEKDHMTGVSENIMLGQLAPLGTGSFGLMLDESKLADAIELEFDA------LGRTP--- 1408

Query: 1450 PVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSS 1509
                     GMM+PG       R++P               S  +SPGYSP+SPGYSP+S
Sbjct: 1409 ---------GMMTPG-------RMTP---------------SRIASPGYSPTSPGYSPTS 1437

Query: 1510 PGYSPTSPGYSPTSPGYSPTSPGYSPTSP 1538
            PGYSPTSP YSPTSPGYSPTSP YSPTSP
Sbjct: 1438 PGYSPTSPAYSPTSPGYSPTSPAYSPTSP 1466



 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/44 (90%), Positives = 42/44 (95%)

Query: 1530 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP 1573
            SPGYSPTSP YSP+SPGYSPTSPAYSPTSP YSPTSP+YSPTSP
Sbjct: 1423 SPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPTSP 1466



 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 55/143 (38%)

Query: 1543 SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
            +SPGYSPTSP YSPTSP YSPTSP+YSPTSP YSPTSP+YSPTSP         +     
Sbjct: 1422 ASPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPTSPGVYAADNLIACVCHR 1481

Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
                     P         P             PS     P   P  P      P     
Sbjct: 1482 LFAHIAGIQPNVSGLLANKPGLLAHIAGLLSHEPSIFTHKPRLLPDEPGLLSDEPGILTD 1541

Query: 1663 SPAYSPTSPGYSPTSPSYSPTSP 1685
             P       G         P  P
Sbjct: 1542 EPGLLAHKSGVLANLAGIQPNQP 1564



 Score = 84.7 bits (208), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 54/142 (38%)

Query: 1537 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1596
            SP YSP+SPGYSPTSP YSPTSP+YSPTSP YSPTSP+YSPTSP         +      
Sbjct: 1423 SPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPTSPGVYAADNLIACVCHRL 1482

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
                    P         P             PS     P   P  P      P      
Sbjct: 1483 FAHIAGIQPNVSGLLANKPGLLAHIAGLLSHEPSIFTHKPRLLPDEPGLLSDEPGILTDE 1542

Query: 1657 PSYSPTSPAYSPTSPGYSPTSP 1678
            P              G  P  P
Sbjct: 1543 PGLLAHKSGVLANLAGIQPNQP 1564



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/44 (86%), Positives = 38/44 (86%)

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
            SP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP
Sbjct: 1423 SPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPTSP 1466



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 39/43 (90%)

Query: 1656 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
            SP YSPTSP YSPTSPGYSPTSP+YSPTSP YSPTSP+Y+P S
Sbjct: 1423 SPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPTS 1465



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/42 (78%), Positives = 35/42 (83%)

Query: 1663 SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            SP YSPTSPGYSPTSP YSPTSP YSPTSP Y+P S  YSP+
Sbjct: 1423 SPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPT 1464



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/74 (51%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 1710 SSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP 1768
            +SP  SP SP YSPTSP YSPTS +YSPTSP YSP+SP YSP+SP      N        
Sbjct: 1422 ASPGYSPTSPGYSPTSPGYSPTSPAYSPTSPGYSPTSPAYSPTSPGVYAADNLIACVCHR 1481

Query: 1769 QYSPSAGYSPSAPG 1782
             ++  AG  P+  G
Sbjct: 1482 LFAHIAGIQPNVSG 1495



 Score = 63.2 bits (152), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 38/57 (66%), Gaps = 8/57 (14%)

Query: 1718 SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
            +P    SP YSPTS  YSPTSP YSP+SP YSP+S        P YSP+SP YSP++
Sbjct: 1417 TPSRIASPGYSPTSPGYSPTSPGYSPTSPAYSPTS--------PGYSPTSPAYSPTS 1465



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 38/63 (60%), Gaps = 19/63 (30%)

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SP YSPTSP              YSP+SP       YSPTSP YSPTS  YSPTSP+YSP
Sbjct: 1423 SPGYSPTSP-------------GYSPTSP------GYSPTSPAYSPTSPGYSPTSPAYSP 1463

Query: 1744 SSP 1746
            +SP
Sbjct: 1464 TSP 1466


>gi|45935331|gb|AAS79687.1| RNA polymerase II large subunit [Ginkgo biloba]
          Length = 1013

 Score = 1877 bits (4862), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 885/1013 (87%), Positives = 949/1013 (93%), Gaps = 13/1013 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPM+HIGF+KTVLSI+R VCFNCS+ILADE+DH+FKQALKIRNPK+RL+K+LD C
Sbjct: 1    HLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHRFKQALKIRNPKHRLRKVLDCC 60

Query: 142  KNKTKCEGGDEIDV-PGQDGEEPLKKNK-GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            KNKTKCEGGDEID   GQDGEE  KK + GGCGAQQPK++I+GMKM+AEYK  RKK D+Q
Sbjct: 61   KNKTKCEGGDEIDDDQGQDGEEAAKKKRHGGCGAQQPKISIDGMKMVAEYKLPRKKADEQ 120

Query: 200  EQL-PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP-------- 250
            EQL PEP+ERKQ LTAE+VL VLKRISDE+CQLLGLNPKYARPDWMILQVLP        
Sbjct: 121  EQLMPEPIERKQQLTAEKVLSVLKRISDEECQLLGLNPKYARPDWMILQVLPIPPPPVRP 180

Query: 251  --IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
              +     R  DDLTHQLAMIIRHNENL+RQERNGAPAHII+EFAQLLQFHIATYFDN+L
Sbjct: 181  SVMMDTTSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIITEFAQLLQFHIATYFDNDL 240

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
            PGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSARTVITPDP INIDQLGVPW
Sbjct: 241  PGQPRATQRSGRPIKSICNRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPW 300

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHH
Sbjct: 301  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHH 360

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD
Sbjct: 361  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 420

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRK+TKRDTFIEKDV
Sbjct: 421  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKVTKRDTFIEKDV 480

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
            FMNILMWWEDFDGK+P PTILKPRPLWTGKQVFNLIIP+QINL R +AWH++++ G +T 
Sbjct: 481  FMNILMWWEDFDGKIPSPTILKPRPLWTGKQVFNLIIPRQINLIRYSAWHSESETGFITP 540

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            GDT VRIEKGE+LSGTLCKKTLGTS+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 
Sbjct: 541  GDTCVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQ 600

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDTIADA TMETIN+TISKAKN VK LIK AQ+K+LE EPGRTMMESFEN+VNQ
Sbjct: 601  GFSIGIGDTIADAATMETINETISKAKNEVKQLIKAAQEKALEAEPGRTMMESFENRVNQ 660

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
            VLN ARD+AGSSAQ+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF 
Sbjct: 661  VLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFD 720

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR
Sbjct: 721  GRTLPHFTKDDNGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 780

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMK+ EF+  +++E
Sbjct: 781  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFENVYKYE 840

Query: 909  MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
            +D ENWNP YML ++++DLKTI+E R+VFDAEVQKLEADR QL TEIA SGD+SWP+PVN
Sbjct: 841  IDNENWNPGYMLADHVEDLKTIREFRNVFDAEVQKLEADRRQLGTEIAPSGDNSWPMPVN 900

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            LKRLIWNAQKTFK+D R+PSDMHPME+VEAVDKLQERLKVVPG+D +S+EAQKNATLFFN
Sbjct: 901  LKRLIWNAQKTFKIDLRKPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFN 960

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            ILLRSTFASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 961  ILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1013


>gi|308229944|gb|ADO24379.1| RNA polymerase II large subunit, partial [Drosophila angularis]
          Length = 1847

 Score = 1876 bits (4859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 994/1882 (52%), Positives = 1261/1882 (67%), Gaps = 239/1882 (12%)

Query: 21   GILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPG 78
            G+LSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +C+TC  NM ECPG
Sbjct: 1    GMLSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPG 60

Query: 79   HFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-ALKIR-NPKNRLKK 136
            HFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  +K +  P+ RL  
Sbjct: 61   HFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSKGQPRKRLAY 120

Query: 137  ILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIEGMKMIAEYKAQRK 194
            + D CK KT CEGG+++D+   + + +P KK   GGCG  QP +   G+ + AE+K    
Sbjct: 121  VYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIRRTGLDLTAEWK---H 177

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
             N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARPDWMI+ VLP+PP 
Sbjct: 178  VNEDTQ------EKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPL 231

Query: 255  PVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
             VRP+          DDLTH+LA II+ N  LR+ E +GA AH+I E  ++LQFH+AT  
Sbjct: 232  AVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLV 291

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + IDQ+
Sbjct: 292  DNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 351

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD+G+R+DLR+  KS
Sbjct: 352  GVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKS 408

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
            SD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STFR+NLS TSPYNAD
Sbjct: 409  SDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNAD 468

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL   RK+TKRD FI
Sbjct: 469  FDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 528

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DK 603
             ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N+ RT + H D  D 
Sbjct: 529  TREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDD 588

Query: 604  G---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
            G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+G D A +F G+ Q +
Sbjct: 589  GPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTV 648

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            +N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +  LEP PG T+ +
Sbjct: 649  INNWLLLEGHSIGIGDTIADPQTYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQ 708

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INISQ+ ACVGQQNVEG
Sbjct: 709  TFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEG 768

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKT+
Sbjct: 769  KRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTA 828

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E Q + ++K+    
Sbjct: 829  ETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKV 888

Query: 901  FDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATE----- 954
            F+K F+F+     W N  YM + + DD+  IKE+ D  DA +Q+LE +  +L T+     
Sbjct: 889  FEKRFKFD-----WTNERYMRKVFTDDV--IKEMTDSSDA-IQELEGEWDKLVTDRDNLR 940

Query: 955  -IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
             I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V+  V  L ER  +V G D
Sbjct: 941  TIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVQGLLERCVIVTGND 1000

Query: 1014 PLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
             +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+   PGEM+
Sbjct: 1001 RISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQANPGEMV 1060

Query: 1074 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGV 1133
            G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VFL  G 
Sbjct: 1061 GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGA 1120

Query: 1134 NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE 1193
                E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD D  P 
Sbjct: 1121 ARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFD--PT 1178

Query: 1194 KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDE 1253
            +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNADKL+LRIRIMN+E
Sbjct: 1179 RISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNE 1238

Query: 1254 APKGELNDESA---EDDVFLKKIESNMLTEMALRGV------------------------ 1286
              K +  DE+    EDD+FL+ IE+NML++M L+G+                        
Sbjct: 1239 ENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITET 1298

Query: 1287 ----------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
                            +++ V+   DVD  RT+SN + EI +VLGIEAVRR++  E+  V
Sbjct: 1299 GEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRRSVEKEMNAV 1358

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            + F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA  
Sbjct: 1359 LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAH 1418

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYMEG-----LEFG 1443
            AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S M G     +  G
Sbjct: 1419 AETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGGAAMFIGGG 1478

Query: 1444 MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSP 1503
             TP+ +P   TP+ +   +P Y FSP   +S +T        GG +FSP+++   S  SP
Sbjct: 1479 STPSMTP-PMTPWVN-CHTPRY-FSPPGHVSAMTP-------GGPSFSPSAASDASGMSP 1528

Query: 1504 -------------------------------------GYSPSSPGYSPTSPGYSPTSPGY 1526
                                                  Y+ SSPG +  SP YSP+SP Y
Sbjct: 1529 SWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGA--SPNYSPSSPNY 1586

Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTS--------------PAYSPT-----SPSYSPT-SP 1566
            SPTSP Y+  SP Y+ ++P ++P S              P YSPT     SPS++ + S 
Sbjct: 1587 SPTSPLYAAASPRYASATPNFNPQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSN 1646

Query: 1567 SYSPTSP----------------------------------SYSPTSPSYSPTSPSYSPT 1592
             YSP +                                    YSPTSPSYSPTSP+Y+P 
Sbjct: 1647 MYSPGNAYSPSSSNYSPNSPSYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPV 1706

Query: 1593 SPSYSPTSPSYSPTSPAYSPTSPAY-----------------------SPTSPAYSPTSP 1629
            +PSYSPTSP+YS  SP YSP SPAY                       SP SP Y+P SP
Sbjct: 1707 TPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSP 1765

Query: 1630 SYSPTSPSYSPTSP-------------SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
             YSP SP YSPTSP              YSPT  +YS TSP YSP    YSP S  YSPT
Sbjct: 1766 QYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNISIYSPGSTKYSPT 1825

Query: 1677 SPSYSPTSPTYSPTSPSYNPQS 1698
            SP+Y+PT+  YSPTSP Y+P +
Sbjct: 1826 SPTYTPTARNYSPTSPMYSPTA 1847



 Score =  103 bits (257), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 92/215 (42%), Positives = 117/215 (54%), Gaps = 54/215 (25%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+ +SP  +  SP+YSP+SP+YSPTSP Y+  SP Y+  +P ++P S GYSP+S  YSPT
Sbjct: 1567 YTASSPGGA--SPNYSPSSPNYSPTSPLYAAASPRYASATPNFNPQSTGYSPSSSGYSPT 1624

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPR------------------------------ 1713
            SP YSPTS   +  S   S S  YSP +                                
Sbjct: 1625 SPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNYSPNSPSYSPMSPSYSPSSPSYSP 1684

Query: 1714 ----LSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGG--------- 1759
                 SP SP YSPTSPNY+P + SYSPTSP+YS +SP YSP+SP  +  G         
Sbjct: 1685 TSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPT 1743

Query: 1760 ------NPDYSPSSPQYSP-SAGYSPSAPGYSPSS 1787
                  + D SP SPQY+P S  YSP++P YSP+S
Sbjct: 1744 YSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTS 1778



 Score = 43.9 bits (102), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 18/88 (20%)

Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQ---------- 1769
            Y+ +SP  +  S +YSP+SP+YSP+SP Y+ +SP  A    P+++P S            
Sbjct: 1567 YTASSPGGA--SPNYSPSSPNYSPTSPLYAAASPRYA-SATPNFNPQSTGYSPSSSGYSP 1623

Query: 1770 ----YSPSAGYSPSAPGYSPSSTSQYTP 1793
                YSP++ +  S+P ++ S ++ Y+P
Sbjct: 1624 TSPVYSPTSNFQ-SSPSFAGSGSNMYSP 1650


>gi|33326215|gb|AAQ08517.1| RNA polymerase II largest subunit [Nymphaea odorata]
          Length = 1013

 Score = 1875 bits (4858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 890/1013 (87%), Positives = 946/1013 (93%), Gaps = 13/1013 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPMFHIGFMKTVL+I+R VCFNCS ILADE+DH+FKQALKIRNPK RLKK+LD C
Sbjct: 1    HLELAKPMFHIGFMKTVLAILRCVCFNCSHILADEEDHRFKQALKIRNPKARLKKVLDCC 60

Query: 142  KNKTKCEGGDEIDV-PGQDGEE-PLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            K+K KCEGGD+ID   GQD E+ P KK +GGCGA QPK+TIEGMK+IAEYK  RKK+D+Q
Sbjct: 61   KSKQKCEGGDDIDEDQGQDLEDAPKKKKRGGCGAMQPKITIEGMKIIAEYKVPRKKSDEQ 120

Query: 200  EQ-LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP-------- 250
            EQ LPEPVERKQ L+AERVL VLKRISDEDC LLGLNPKYARPDWMILQVLP        
Sbjct: 121  EQMLPEPVERKQQLSAERVLNVLKRISDEDCLLLGLNPKYARPDWMILQVLPIPPPPVRP 180

Query: 251  --IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
              +     R  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL
Sbjct: 181  SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 240

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
            PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPW
Sbjct: 241  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPW 300

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIALN+TYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR+DGQR+DLRYL+KSSDHH
Sbjct: 301  SIALNMTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIREDGQRVDLRYLRKSSDHH 360

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            LELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD
Sbjct: 361  LELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 420

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMNMHVPQ FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV
Sbjct: 421  EMNMHVPQCFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 480

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
            FMNILMWWEDFDGK+P P I+KPRPLWTGKQVFNLIIPKQINL R +AWH++++ G +T 
Sbjct: 481  FMNILMWWEDFDGKIPAPAIMKPRPLWTGKQVFNLIIPKQINLIRYSAWHSESETGFITP 540

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            GDT VRIE+GELLSGTLCKKT+GTS+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN
Sbjct: 541  GDTCVRIERGELLSGTLCKKTMGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 600

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
            AFSIGIGDTIADA TME IN+TISKAKN VK LIK AQ+K LE EPGRTMMESFEN+VNQ
Sbjct: 601  AFSIGIGDTIADASTMEKINETISKAKNEVKELIKAAQEKQLEAEPGRTMMESFENRVNQ 660

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
            VLN ARD+AGSSAQ+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+
Sbjct: 661  VLNKARDDAGSSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFI 720

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
            DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR
Sbjct: 721  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 780

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKKSEFDK F+FE
Sbjct: 781  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKSEFDKVFKFE 840

Query: 909  MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
             D+ENW+P+Y+  ++++DLKTIKEL+DVF AEVQKLE DR QLATEIAT+GD+SWP+PVN
Sbjct: 841  FDDENWDPSYLQPDFVEDLKTIKELQDVFHAEVQKLETDRRQLATEIATTGDNSWPMPVN 900

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            LKRLIWNAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVVPGED +S+EAQKNATLFFN
Sbjct: 901  LKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGEDAMSMEAQKNATLFFN 960

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            ILLRSTFASKRV KE+RLTREAF+WVIGEIESRFLQSLVA GEMIGCVAAQSI
Sbjct: 961  ILLRSTFASKRVSKEYRLTREAFDWVIGEIESRFLQSLVAAGEMIGCVAAQSI 1013


>gi|308229956|gb|ADO24385.1| RNA polymerase II large subunit, partial [Drosophila phalerata]
          Length = 1849

 Score = 1875 bits (4857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 996/1884 (52%), Positives = 1258/1884 (66%), Gaps = 246/1884 (13%)

Query: 21   GILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPG 78
            GILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +C+TC  NM ECPG
Sbjct: 1    GILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPG 60

Query: 79   HFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-ALKIR-NPKNRLKK 136
            HFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  +K +  P+ RL  
Sbjct: 61   HFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSKGQPRKRLAY 120

Query: 137  ILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIEGMKMIAEYKAQRK 194
            + D CK KT CEGG+++D+   + + +P KK   GGCG  QP +   G+ + AE+K    
Sbjct: 121  VYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIRRTGLDLTAEWK---H 177

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
             N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARPDWMI+ VLP+PP 
Sbjct: 178  VNEDSQ------EKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPL 231

Query: 255  PVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
             VRP+          DDLTH+LA II+ N  LR+ E +GA AH+I E  ++LQFH+AT  
Sbjct: 232  AVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLV 291

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + IDQ+
Sbjct: 292  DNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 351

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA NLT+PE VTP+NI+R++EL   G    PG   AKYI+RD+G+R+DLR+  KS
Sbjct: 352  GVPRSIAQNLTFPELVTPFNIDRMQELARRGNSQYPG---AKYIVRDNGERIDLRFHPKS 408

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
            SD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STFR+NLS TSPYNAD
Sbjct: 409  SDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNAD 468

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL   RK+TKRD FI
Sbjct: 469  FDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 528

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DK 603
             ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N+ RT + H D  D 
Sbjct: 529  TREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDD 588

Query: 604  G---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
            G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+G D A +F G+ Q +
Sbjct: 589  GPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTV 648

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            +N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +  LEP PG T+ +
Sbjct: 649  INNWLLLEGHSIGIGDTIADPQTYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQ 708

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INISQ+ ACVGQQNVEG
Sbjct: 709  TFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEG 768

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKT+
Sbjct: 769  KRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTA 828

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E Q + ++K+    
Sbjct: 829  ETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKV 888

Query: 901  FDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATE----- 954
            F+K F+F+     W N  YM + + DD+  IKE+ D  DA +Q+LE +  +L T+     
Sbjct: 889  FEKRFKFD-----WSNERYMRKVFTDDV--IKEMTDSSDA-IQELEGEWDKLVTDRDNLR 940

Query: 955  -IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
             I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V+  V  L ER  +V G D
Sbjct: 941  TIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVQGLLERCVIVTGND 1000

Query: 1014 PLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
             +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+   PGEM+
Sbjct: 1001 RISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQANPGEMV 1060

Query: 1074 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGV 1133
            G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VFL  G 
Sbjct: 1061 GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGA 1120

Query: 1134 NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE 1193
                E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD D  P 
Sbjct: 1121 ARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFD--PT 1178

Query: 1194 KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDE 1253
            +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNADKL+LRIRIMN+E
Sbjct: 1179 RISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNE 1238

Query: 1254 APKGELNDESA---EDDVFLKKIESNMLTEMALRGV------------------------ 1286
              K +  DE+    EDD+FL+ IE+NML++M L+G+                        
Sbjct: 1239 ENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITET 1298

Query: 1287 ----------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
                            +++ V+   DVD  RT+SN + EI +VLGIEAVR+++  E+  V
Sbjct: 1299 GEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAV 1358

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            + F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA  
Sbjct: 1359 LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAH 1418

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYMEG-----LEFG 1443
            AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S M G     +  G
Sbjct: 1419 AETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGGAAMFIGGG 1478

Query: 1444 MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSP 1503
             TP+ +P   TP+ +   +P Y FSP   +S +T        GG +FSP+++   S  SP
Sbjct: 1479 STPSMTP-PMTPWVN-CHTPRY-FSPPGHVSAMTP-------GGPSFSPSAASDASGMSP 1528

Query: 1504 -------------------------------------GYSPSSPGYSPTSPGYSPTSPGY 1526
                                                  Y+ SSPG +  SP YSP+SP Y
Sbjct: 1529 SWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGA--SPNYSPSSPNY 1586

Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTS--------------PAYSPT-----SPS------- 1560
            SPTSP Y+  SP Y+ ++P ++P S              P YSPT     SPS       
Sbjct: 1587 SPTSPLYAAASPRYASATPNFNPQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSN 1646

Query: 1561 -YSPTSP----------------------------------SYSPTSPSYSPTSPSYSPT 1585
             YSP +                                    YSPTSPSYSPTSP+Y+P 
Sbjct: 1647 MYSPGNAYSPSSSNYSPNSPSYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPV 1706

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAY-----------------------SPTSPAYSPTSP 1622
            +PSYSPTSP+YS  SP YSP SPAY                       SP SP Y+P SP
Sbjct: 1707 TPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSP 1765

Query: 1623 AYSPTSPSYSPTSP-------------SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1669
             YSP SP YSPTSP              YSPT  +YS TSP YSP    YSP S  YSPT
Sbjct: 1766 QYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNISIYSPGSTKYSPT 1825

Query: 1670 SPGYSPTSPSYSPTSPTYSPTSPS 1693
            SP Y+PT+ +YSPTSP YSPT PS
Sbjct: 1826 SPTYTPTARNYSPTSPKYSPTGPS 1849



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 90/187 (48%), Gaps = 59/187 (31%)

Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS------------ 1684
            +Y+ +SP  +  SP+YSP+SP+YSPTSP Y+  SP Y+  +P+++P S            
Sbjct: 1566 NYTASSPGGA--SPNYSPSSPNYSPTSPLYAAASPRYASATPNFNPQSTGYSPSSSGYSP 1623

Query: 1685 --PTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP----------------------- 1719
              P YSPTS   +  S   S S  YSP +     +S                        
Sbjct: 1624 TSPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNYSPNSPSYSPMSPSYSPSSPSYS 1683

Query: 1720 -----YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
                 YSPTSP+YSPTS +Y+P +PSYSP+SP YS S         P YSP+SP      
Sbjct: 1684 PTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYSAS---------PHYSPASP------ 1728

Query: 1775 GYSPSAP 1781
             YS +  
Sbjct: 1729 AYSQTGV 1735



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 77/187 (41%), Gaps = 90/187 (48%)

Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
            Y+ +SPG +  SP+YSP+SP YSPTSP              Y+ +SPR      Y+  +P
Sbjct: 1567 YTASSPGGA--SPNYSPSSPNYSPTSP-------------LYAAASPR------YASATP 1605

Query: 1726 NYSPTSSS--------------YSPT-----SPSY------------------------- 1741
            N++P S+               YSPT     SPS+                         
Sbjct: 1606 NFNPQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNYSPNS 1665

Query: 1742 ------------------------SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYS 1777
                                    SP+SP+YSP+SP N     P YSP+SP YS S  YS
Sbjct: 1666 PSYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSP-NYTPVTPSYSPTSPNYSASPHYS 1724

Query: 1778 PSAPGYS 1784
            P++P YS
Sbjct: 1725 PASPAYS 1731



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 18/88 (20%)

Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQ---------- 1769
            Y+ +SP  +  S +YSP+SP+YSP+SP Y+ +SP  A    P+++P S            
Sbjct: 1567 YTASSPGGA--SPNYSPSSPNYSPTSPLYAAASPRYA-SATPNFNPQSTGYSPSSSGYSP 1623

Query: 1770 ----YSPSAGYSPSAPGYSPSSTSQYTP 1793
                YSP++ +  S+P ++ S ++ Y+P
Sbjct: 1624 TSPVYSPTSNFQ-SSPSFAGSGSNMYSP 1650


>gi|308229958|gb|ADO24386.1| RNA polymerase II large subunit, partial [Drosophila quinaria]
          Length = 1847

 Score = 1873 bits (4851), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 992/1882 (52%), Positives = 1258/1882 (66%), Gaps = 239/1882 (12%)

Query: 21   GILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPG 78
            GILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +C+TC  NM ECPG
Sbjct: 1    GILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPG 60

Query: 79   HFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL--KIRNPKNRLKK 136
            HFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+ +      P+ RL  
Sbjct: 61   HFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVVKSKGQPRKRLAY 120

Query: 137  ILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIEGMKMIAEYKAQRK 194
            + D CK KT CEGG+++D+   + + +P KK   GGCG  QP +   G+ + AE+K    
Sbjct: 121  VYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIRRTGLDLTAEWK---H 177

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
             N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARPDWMI+ VLP+PP 
Sbjct: 178  VNEDSQ------EKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPL 231

Query: 255  PVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
             VRP+          DDLTH+LA II+ N  LR+ E +GA AH+I E  ++LQFH+AT  
Sbjct: 232  AVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLV 291

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + IDQ+
Sbjct: 292  DNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 351

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD+G+R+DLR+  KS
Sbjct: 352  GVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKS 408

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
            SD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STFR+NLS TSPYNAD
Sbjct: 409  SDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNAD 468

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE   + + P+ I++PQ+N+PVMGIVQDTL   RK+TKRD FI
Sbjct: 469  FDGDEMNLHVPQSMETRAEAENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 528

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DK 603
             ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N+ RT + H D  D 
Sbjct: 529  TREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDD 588

Query: 604  G---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
            G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+G D A +F G+ Q +
Sbjct: 589  GPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTV 648

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            +N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +  LEP PG T+ +
Sbjct: 649  INNWLLFEGHSIGIGDTIADPQTYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQ 708

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INISQ+ ACVGQQNVEG
Sbjct: 709  TFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEG 768

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKT+
Sbjct: 769  KRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTA 828

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E Q + ++K+    
Sbjct: 829  ETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKV 888

Query: 901  FDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATE----- 954
            F+K F+F+     W N  YM + + DD+  IKE+ D  DA +Q+LE +  +L T+     
Sbjct: 889  FEKRFKFD-----WSNERYMRKVFTDDV--IKEMTDSSDA-IQELEGEWEKLVTDRDNLR 940

Query: 955  -IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
             I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V+  V  L ER  +V G D
Sbjct: 941  TIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVQGLLERCVIVTGND 1000

Query: 1014 PLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
             +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+   PGEM+
Sbjct: 1001 RISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQANPGEMV 1060

Query: 1074 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGV 1133
            G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VFL  G 
Sbjct: 1061 GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGA 1120

Query: 1134 NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE 1193
                E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD D  P 
Sbjct: 1121 ARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFD--PT 1178

Query: 1194 KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDE 1253
            +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNADKL+LRIRIMN+E
Sbjct: 1179 RISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNE 1238

Query: 1254 APKGELNDESA---EDDVFLKKIESNMLTEMALRGV------------------------ 1286
              K +  DE+    EDD+FL+ IE+NML++M L+G+                        
Sbjct: 1239 ENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITET 1298

Query: 1287 ----------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
                            +++ V+   DVD  RT+SN + EI +VLGIEAVR+++  E+  V
Sbjct: 1299 GEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAV 1358

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            + F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA  
Sbjct: 1359 LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAH 1418

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYMEG-----LEFG 1443
            AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S M G     +  G
Sbjct: 1419 AETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGGAAMFIGGG 1478

Query: 1444 MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSP 1503
             TP+ +P   TP+ +   +P Y FSP   +S +T        GG +FSP+++   S  SP
Sbjct: 1479 STPSMTP-PMTPWVN-CHTPRY-FSPPGHVSAMTP-------GGPSFSPSAASDASGMSP 1528

Query: 1504 -------------------------------------GYSPSSPGYSPTSPGYSPTSPGY 1526
                                                  Y+ SSPG +  SP YSP+SP Y
Sbjct: 1529 SWSPAHPGSSPSSPGPSMSPYFLASPSVSPSYSPTSPNYTASSPGGA--SPNYSPSSPNY 1586

Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTS--------------PAYSPT-----SPSYSPT-SP 1566
            SPTSP Y+ TSP Y+ ++P ++  S              P YSPT     SPS++ + S 
Sbjct: 1587 SPTSPMYAATSPRYASATPNFNQQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSN 1646

Query: 1567 SYSPTSP----------------------------------SYSPTSPSYSPTSPSYSPT 1592
             YSP +                                    YSPTSPSYSPTSP+Y+P 
Sbjct: 1647 MYSPGNAYSPSSSNYSPNSPSYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPV 1706

Query: 1593 SPSYSPTSPSYSPTSPAYSPTSPAY-----------------------SPTSPAYSPTSP 1629
            +PSYSPTSP+YS  SP YSP SPAY                       SP SP Y+P SP
Sbjct: 1707 TPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSP 1765

Query: 1630 SYSPTSPSYSPTSP-------------SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
             YSP SP YSPTSP              YSPT  +YS TSP YSP    YSP S  YSPT
Sbjct: 1766 QYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNISIYSPGSTKYSPT 1825

Query: 1677 SPSYSPTSPTYSPTSPSYNPQS 1698
            SP+Y+PT+  YSPTSP Y+P +
Sbjct: 1826 SPTYTPTARNYSPTSPMYSPTA 1847



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 117/294 (39%), Positives = 156/294 (53%), Gaps = 56/294 (19%)

Query: 1549 PTSPAYSPTSPSY-SPTS--PSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYS 1604
            P +P  +  +P Y SP     + +P  PS+SP++ S  S  SPS+SP  P  SP+SP  S
Sbjct: 1486 PMTPWVNCHTPRYFSPPGHVSAMTPGGPSFSPSAASDASGMSPSWSPAHPGSSPSSPGPS 1545

Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
             +    +  S + S +  + + T+ S    SP+YSP+SP+YSPTSP Y+ TSP Y+  +P
Sbjct: 1546 MSPYFLASPSVSPSYSPTSPNYTASSPGGASPNYSPSSPNYSPTSPMYAATSPRYASATP 1605

Query: 1665 AYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR----------- 1713
             ++  S GYSP+S  YSPTSP YSPTS   +  S   S S  YSP +             
Sbjct: 1606 NFNQQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNYSPNS 1665

Query: 1714 -----------------------LSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYS 1749
                                    SP SP YSPTSPNY+P + SYSPTSP+YS +SP YS
Sbjct: 1666 PSYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYS 1724

Query: 1750 PSSPYNAGGG---------------NPDYSPSSPQYSP-SAGYSPSAPGYSPSS 1787
            P+SP  +  G               + D SP SPQY+P S  YSP++P YSP+S
Sbjct: 1725 PASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTS 1778



 Score = 40.8 bits (94), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 18/88 (20%)

Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQ---------- 1769
            Y+ +SP  +  S +YSP+SP+YSP+SP Y+ +SP  A    P+++  S            
Sbjct: 1567 YTASSPGGA--SPNYSPSSPNYSPTSPMYAATSPRYA-SATPNFNQQSTGYSPSSSGYSP 1623

Query: 1770 ----YSPSAGYSPSAPGYSPSSTSQYTP 1793
                YSP++ +  S+P ++ S ++ Y+P
Sbjct: 1624 TSPVYSPTSNFQ-SSPSFAGSGSNMYSP 1650


>gi|308229950|gb|ADO24382.1| RNA polymerase II large subunit, partial [Drosophila falleni]
          Length = 1847

 Score = 1872 bits (4848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 993/1882 (52%), Positives = 1260/1882 (66%), Gaps = 239/1882 (12%)

Query: 21   GILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPG 78
            G+LSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +C+TC  NM ECPG
Sbjct: 1    GMLSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPG 60

Query: 79   HFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-ALKIR-NPKNRLKK 136
            HFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  +K +  P+ RL  
Sbjct: 61   HFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSKGQPRKRLAY 120

Query: 137  ILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIEGMKMIAEYKAQRK 194
            + D CK KT CEGG+++D+   + + +P KK   GGCG  QP +   G+ + AE+K    
Sbjct: 121  VYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIRRTGLDLTAEWK---H 177

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
             N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARPDWMI+ VLP+PP 
Sbjct: 178  VNEDSQ------EKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPL 231

Query: 255  PVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
             VRP+          DDLTH+LA II+ N  LR+ E +GA AH+I E  ++LQFH+AT  
Sbjct: 232  AVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLV 291

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + IDQ+
Sbjct: 292  DNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 351

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD+G+R+DLR+  KS
Sbjct: 352  GVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKS 408

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
            SD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STFR+NLS TSPYNAD
Sbjct: 409  SDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNAD 468

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL   RK+TKRD FI
Sbjct: 469  FDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 528

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DK 603
             ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N+ RT + H D  D 
Sbjct: 529  TREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDD 588

Query: 604  G---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
            G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+G D A +F G+ Q +
Sbjct: 589  GPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTV 648

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            +N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +  LEP PG T+ +
Sbjct: 649  INNWLLLEGHSIGIGDTIADPQTYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQ 708

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INISQ+ ACVGQQNVEG
Sbjct: 709  TFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEG 768

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKT+
Sbjct: 769  KRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLTGLTPSEFYFHAMGGREGLIDTAVKTA 828

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+     E Q + ++K+    
Sbjct: 829  ETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELAEFQNMPTVKLSNKV 888

Query: 901  FDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATE----- 954
            F+K F+F+     W N  YM + + DD+  IKE+ D  DA +Q+LE +  +L T+     
Sbjct: 889  FEKRFKFD-----WSNERYMRKVFTDDV--IKEMTDSSDA-IQELEGEWDKLVTDRDNLR 940

Query: 955  -IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
             I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V+  V  L ER  +V G D
Sbjct: 941  TIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVQGLLERCVIVTGND 1000

Query: 1014 PLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
             +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+   PGEM+
Sbjct: 1001 RISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQANPGEMV 1060

Query: 1074 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGV 1133
            G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VFL  G 
Sbjct: 1061 GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGA 1120

Query: 1134 NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE 1193
                E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD D  P 
Sbjct: 1121 ARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFD--PT 1178

Query: 1194 KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDE 1253
            +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNADKL+LRIRIMN+E
Sbjct: 1179 RISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNE 1238

Query: 1254 APKGELNDESA---EDDVFLKKIESNMLTEMALRGV------------------------ 1286
              K +  DE+    EDD+FL+ IE+NML++M L+G+                        
Sbjct: 1239 ENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITET 1298

Query: 1287 ----------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
                            +++ V+   DVD  RT+SN + EI +VLGIEAVR+++  E+  V
Sbjct: 1299 GEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAV 1358

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            + F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA  
Sbjct: 1359 LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAH 1418

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYMEG-----LEFG 1443
            AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S M G     +  G
Sbjct: 1419 AETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGGAAMFIGGG 1478

Query: 1444 MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSP 1503
             TP+ +P   TP+ +   +P Y FSP   +S +T        GG +FSP+++   S  SP
Sbjct: 1479 STPSMTP-PMTPWVN-CHTPRY-FSPPGHVSAMTP-------GGPSFSPSAASDASGMSP 1528

Query: 1504 -------------------------------------GYSPSSPGYSPTSPGYSPTSPGY 1526
                                                  Y+ SSPG +  SP YSP+SP Y
Sbjct: 1529 SWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGA--SPNYSPSSPNY 1586

Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTS--------------PAYSPT-----SPSYSPT-SP 1566
            SPTSP Y+  SP Y+ ++P ++P S              P YSPT     SPS++ + S 
Sbjct: 1587 SPTSPLYAAASPRYASATPNFNPQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSN 1646

Query: 1567 SYSPTSP----------------------------------SYSPTSPSYSPTSPSYSPT 1592
             YSP +                                    YSPTSPSYSPTSP+Y+P 
Sbjct: 1647 MYSPGNAYSPSSSNYSPNSPSYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPV 1706

Query: 1593 SPSYSPTSPSYSPTSPAYSPTSPAY-----------------------SPTSPAYSPTSP 1629
            +PSYSPTSP+YS  SP YSP SPAY                       SP SP Y+P SP
Sbjct: 1707 TPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSP 1765

Query: 1630 SYSPTSPSYSPTSP-------------SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
             YSP SP YSPTSP              YSPT  +YS TSP YSP    YSP S  YSPT
Sbjct: 1766 QYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNISIYSPGSTKYSPT 1825

Query: 1677 SPSYSPTSPTYSPTSPSYNPQS 1698
            SP+Y+PT+  YSPTSP Y+P +
Sbjct: 1826 SPTYTPTARNYSPTSPMYSPTA 1847



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/215 (42%), Positives = 117/215 (54%), Gaps = 54/215 (25%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+ +SP  +  SP+YSP+SP+YSPTSP Y+  SP Y+  +P ++P S GYSP+S  YSPT
Sbjct: 1567 YTASSPGGA--SPNYSPSSPNYSPTSPLYAAASPRYASATPNFNPQSTGYSPSSSGYSPT 1624

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPR------------------------------ 1713
            SP YSPTS   +  S   S S  YSP +                                
Sbjct: 1625 SPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNYSPNSPSYSPMSPSYSPSSPSYSP 1684

Query: 1714 ----LSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGG--------- 1759
                 SP SP YSPTSPNY+P + SYSPTSP+YS +SP YSP+SP  +  G         
Sbjct: 1685 TSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPT 1743

Query: 1760 ------NPDYSPSSPQYSP-SAGYSPSAPGYSPSS 1787
                  + D SP SPQY+P S  YSP++P YSP+S
Sbjct: 1744 YSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTS 1778



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 18/88 (20%)

Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQ---------- 1769
            Y+ +SP  +  S +YSP+SP+YSP+SP Y+ +SP  A    P+++P S            
Sbjct: 1567 YTASSPGGA--SPNYSPSSPNYSPTSPLYAAASPRYA-SATPNFNPQSTGYSPSSSGYSP 1623

Query: 1770 ----YSPSAGYSPSAPGYSPSSTSQYTP 1793
                YSP++ +  S+P ++ S ++ Y+P
Sbjct: 1624 TSPVYSPTSNFQ-SSPSFAGSGSNMYSP 1650


>gi|308229946|gb|ADO24380.1| RNA polymerase II large subunit, partial [Drosophila brachynephros]
          Length = 1847

 Score = 1871 bits (4847), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 993/1882 (52%), Positives = 1260/1882 (66%), Gaps = 239/1882 (12%)

Query: 21   GILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPG 78
            GILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +C+TC  NM ECPG
Sbjct: 1    GILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPG 60

Query: 79   HFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-ALKIR-NPKNRLKK 136
            HFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  +K +  P+ RL  
Sbjct: 61   HFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSKGQPRKRLAY 120

Query: 137  ILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIEGMKMIAEYKAQRK 194
            + D CK KT CEGG+++D+   + + +P KK   GGCG  QP +   G+ + AE+K    
Sbjct: 121  VYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIRRTGLDLTAEWK---H 177

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
             N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARPDWMI+ VLP+PP 
Sbjct: 178  VNEDSQ------EKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPL 231

Query: 255  PVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
             VRP+          DDLTH+LA II+ N  LR+ E +GA AH+I E  ++LQFH+AT  
Sbjct: 232  AVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLV 291

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + IDQ+
Sbjct: 292  DNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 351

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD+G+R+DLR+  KS
Sbjct: 352  GVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKS 408

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
            SD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STFR+NLS TSPYNAD
Sbjct: 409  SDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNAD 468

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL   RK+TKRD FI
Sbjct: 469  FDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 528

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DK 603
             ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N+ RT + H D  D 
Sbjct: 529  TREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDD 588

Query: 604  G---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
            G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+G D A +F G+ Q +
Sbjct: 589  GPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTV 648

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            +N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +  LEP PG T+ +
Sbjct: 649  INNWLLLEGHSIGIGDTIADPQTYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQ 708

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INISQ+ ACVGQQNVEG
Sbjct: 709  TFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEG 768

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKT+
Sbjct: 769  KRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTA 828

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E Q + ++K+    
Sbjct: 829  ETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKV 888

Query: 901  FDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATE----- 954
            F+K F+F+     W N  YM + + DD+  IKE+ D  DA +Q+LE +  +L T+     
Sbjct: 889  FEKRFKFD-----WSNERYMRKVFTDDV--IKEMTDSSDA-IQELEGEWDKLVTDRDNLR 940

Query: 955  -IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
             I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V+  V  L ER  +V G D
Sbjct: 941  TIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVQGLLERCVIVTGND 1000

Query: 1014 PLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
             +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+   PGEM+
Sbjct: 1001 RISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQANPGEMV 1060

Query: 1074 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGV 1133
            G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VFL  G 
Sbjct: 1061 GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGA 1120

Query: 1134 NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE 1193
                E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD D  P 
Sbjct: 1121 ARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFD--PT 1178

Query: 1194 KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDE 1253
            +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNADKL+LRIRIMN+E
Sbjct: 1179 RISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNE 1238

Query: 1254 APKGELNDESA---EDDVFLKKIESNMLTEMALRGV------------------------ 1286
              K +  DE+    EDD+FL+ IE+NML++M L+G+                        
Sbjct: 1239 ENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITET 1298

Query: 1287 ----------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
                            +++ V+   DVD  RT+SN + EI +VLGIEAVR+++  E+  V
Sbjct: 1299 GEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMDAV 1358

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            +   G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA  
Sbjct: 1359 LHSYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAH 1418

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYMEG-----LEFG 1443
            AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S M G     +  G
Sbjct: 1419 AETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGGAAMFIGGG 1478

Query: 1444 MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSP 1503
             TP+ +P   TP+ +   +P Y FSP   +S +T        GG +FSP+++   S  SP
Sbjct: 1479 STPSMTP-PMTPWVN-CHTPRY-FSPPGHVSAMTP-------GGPSFSPSAASDASGMSP 1528

Query: 1504 -------------------------------------GYSPSSPGYSPTSPGYSPTSPGY 1526
                                                  Y+ SSPG +  SP YSP+SP Y
Sbjct: 1529 SWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGA--SPNYSPSSPNY 1586

Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTS--------------PAYSPT-----SPSYSPT-SP 1566
            SPTSP Y+  SP Y+ ++P ++P S              P YSPT     SPS++ + S 
Sbjct: 1587 SPTSPLYAAASPRYASATPNFNPQSTGYSPSSSGYSPTSPVYSPTSNFQSSPSFAGSGSN 1646

Query: 1567 SYSPTSP----------------------------------SYSPTSPSYSPTSPSYSPT 1592
             YSP +                                    YSPTSPSYSPTSP+Y+P 
Sbjct: 1647 MYSPGNAYSPSSSNYSPNSPSYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPV 1706

Query: 1593 SPSYSPTSPSYSPTSPAYSPTSPAY-----------------------SPTSPAYSPTSP 1629
            +PSYSPTSP+YS  SP YSP SPAY                       SP SP Y+P SP
Sbjct: 1707 TPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPGSP 1765

Query: 1630 SYSPTSPSYSPTSP-------------SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
             YSP SP YSPTSP              YSPT  +YS TSP YSP    YSP S  YSPT
Sbjct: 1766 QYSPASPKYSPTSPLYSPSSPQHSPSNQYSPTGSTYSATSPRYSPNISIYSPGSTKYSPT 1825

Query: 1677 SPSYSPTSPTYSPTSPSYNPQS 1698
            SP+Y+PT+  YSPTSP Y+P +
Sbjct: 1826 SPTYTPTARNYSPTSPMYSPTA 1847



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/215 (42%), Positives = 117/215 (54%), Gaps = 54/215 (25%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+ +SP  +  SP+YSP+SP+YSPTSP Y+  SP Y+  +P ++P S GYSP+S  YSPT
Sbjct: 1567 YTASSPGGA--SPNYSPSSPNYSPTSPLYAAASPRYASATPNFNPQSTGYSPSSSGYSPT 1624

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPR------------------------------ 1713
            SP YSPTS   +  S   S S  YSP +                                
Sbjct: 1625 SPVYSPTSNFQSSPSFAGSGSNMYSPGNAYSPSSSNYSPNSPSYSPMSPSYSPSSPSYSP 1684

Query: 1714 ----LSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGG--------- 1759
                 SP SP YSPTSPNY+P + SYSPTSP+YS +SP YSP+SP  +  G         
Sbjct: 1685 TSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPT 1743

Query: 1760 ------NPDYSPSSPQYSP-SAGYSPSAPGYSPSS 1787
                  + D SP SPQY+P S  YSP++P YSP+S
Sbjct: 1744 YSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTS 1778



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 18/88 (20%)

Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQ---------- 1769
            Y+ +SP  +  S +YSP+SP+YSP+SP Y+ +SP  A    P+++P S            
Sbjct: 1567 YTASSPGGA--SPNYSPSSPNYSPTSPLYAAASPRYA-SATPNFNPQSTGYSPSSSGYSP 1623

Query: 1770 ----YSPSAGYSPSAPGYSPSSTSQYTP 1793
                YSP++ +  S+P ++ S ++ Y+P
Sbjct: 1624 TSPVYSPTSNFQ-SSPSFAGSGSNMYSP 1650


>gi|324120548|dbj|BAJ78665.1| RNA polymerase II largest subunit [Zorotypus sp. 154-1]
          Length = 1862

 Score = 1870 bits (4845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1016/1901 (53%), Positives = 1294/1901 (68%), Gaps = 177/1901 (9%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A V  V+ VQFGILSPDEIR+MSV +  I   ET E G+PK GGL DPR G IDR  +
Sbjct: 4    SKAPVRYVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSR 63

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  N  ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + + K+ L
Sbjct: 64   CQTCAGNQTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPTNPRIKEVL 123

Query: 126  KIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP-----LKKNKGGCGAQQPKL 178
                  P+ RL  + D CK K  CEGGDE+D+   + ++P      K+  GGCG  QP +
Sbjct: 124  AKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDNPDDPSTQQNRKQGHGGCGRYQPNI 183

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
               G+ + AE+K     N+D +      E+K +LTAERV  + K I+DE+C  LG++PK+
Sbjct: 184  RRSGLDLTAEWK---HVNEDNQ------EKKISLTAERVWEIFKHITDEECCALGMDPKF 234

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARPDWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  L R E+ G  AH+
Sbjct: 235  ARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLSDIIKANNELIRNEQAGGAAHV 294

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            I+E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFS
Sbjct: 295  IAENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 354

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVITPDP + IDQ+GVP SIA N+T+PE VTP+NI++++ELV  G    PG   AKYI
Sbjct: 355  ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPG---AKYI 411

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            +RD+G+R+DLR+  K+SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+
Sbjct: 412  VRDNGERIDLRFHPKTSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPW 471

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  L + P+ I++PQ+N+PVMGIVQ
Sbjct: 472  STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQANKPVMGIVQ 531

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL   RK+TKRD F+EK+  MN+LM+   ++G +PQP I+KP+PLWTGKQVF+LIIP  
Sbjct: 532  DTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWNGVMPQPAIMKPKPLWTGKQVFSLIIPGN 591

Query: 589  INLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
            +N+ RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E
Sbjct: 592  VNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLE 651

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
            +G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++
Sbjct: 652  LGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQK 711

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS I
Sbjct: 712  AHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNI 771

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFH
Sbjct: 772  NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH 831

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+   
Sbjct: 832  AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGE 891

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
             +E Q L ++K+    F++ F+F+   E        ++ + DL    ++    + E ++L
Sbjct: 892  TVEFQNLPTIKLSNKAFERKFKFDPTNERHLRRIFNEDILRDLMGSGDVISELEKEWEQL 951

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
              DR  L  +I  SG+S   LP NL+R+IWNA K F ++ R P+D+ P++V++ V+ L +
Sbjct: 952  CKDREALR-QIFPSGESKVVLPCNLQRMIWNAHKIFHINKRAPTDLGPLKVIQGVNDLLK 1010

Query: 1005 RLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
            +  +V GED LSV+A +NATL F  L+RST  +K V +E RL+ EAFEW++GEIE+RF Q
Sbjct: 1011 KCVIVAGEDHLSVQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLVGEIENRFQQ 1070

Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS 1124
            +  +PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PS
Sbjct: 1071 AQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1130

Query: 1125 LSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
            L+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYE
Sbjct: 1131 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIGEDQEFVNVYYE 1190

Query: 1185 MPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            MPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+
Sbjct: 1191 MPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLV 1248

Query: 1245 LRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV--------------- 1286
            LRIRIMN +  K +  +E+    EDD+FL+ IE+NML++M L+G+               
Sbjct: 1249 LRIRIMNSDDNKFQEEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1308

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     +++ V+   DVD  RT SN + EI  VLGIEAVR+
Sbjct: 1309 KKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRK 1368

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1369 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1428

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQL---PSYM- 1437
            D+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  IE+ +   P  M 
Sbjct: 1429 DVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKYGIEIPMSIGPGIMG 1488

Query: 1438 -EGLEFGM--TPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS 1494
              G+ FG   TP++SP S TP+  G              +P   + +SP  G +  S   
Sbjct: 1489 GAGMFFGSASTPSQSP-SMTPWGQGA-------------TPAYSSSYSP--GNLMGS--- 1529

Query: 1495 SPGYSPSSPGYSPS----SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
              G +P  P +SPS    + GYSP    +SP     S   P  SP    Y PS  G    
Sbjct: 1530 --GATPGGPSFSPSGASDASGYSPNYSQWSPQPGSPSSPGPAMSP----YIPSPVGAHSP 1583

Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
            S + S  SP+Y+P SPS +P SP+YSPTSP+YSPTS +YSPTSP+YSP SPSY   SP Y
Sbjct: 1584 SYSPS--SPTYAPPSPSLTPASPNYSPTSPTYSPTSTNYSPTSPNYSPNSPSYPQNSPLY 1641

Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
            SP+SP+YSPT+P YSPTSP+YSPTSPSYSPTSP+YS T+PSYSPTSPSY PTSP YSPTS
Sbjct: 1642 SPSSPSYSPTTPLYSPTSPAYSPTSPSYSPTSPNYS-TNPSYSPTSPSYVPTSPVYSPTS 1700

Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA-----------------------Y 1707
            P YSPTSPS+SP S TYSP SP+Y+P S  YSPS                          
Sbjct: 1701 PTYSPTSPSFSPKSSTYSPASPTYSPASPSYSPSSPQFTPGSPSFSSTSPSYSPSSPQYS 1760

Query: 1708 SPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP-------------Y 1754
              S      +  YSPTSPNYSPTS S+  +SP Y+P++P YSP+SP              
Sbjct: 1761 PGSPSYSPSSPKYSPTSPNYSPTSPSFVGSSPQYTPATPQYSPTSPTYSPSQSYSPSSPQ 1820

Query: 1755 NAGGGNPDYSPSSP---------------------QYSPSA 1774
            +    +  YSP+SP                     +YSP++
Sbjct: 1821 HTPSTSTRYSPTSPNYSPSSPTYSPSSPQYSLSSSKYSPTS 1861



 Score = 41.6 bits (96), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 15/131 (11%)

Query: 1674 SPTSPSYSPT-SPTYSPTSPSYNPQSAKYSPS----LAYSPSSPRLSP-----ASPYSPT 1723
            S ++PS SP+ +P     +P+Y   S+ YSP        +P  P  SP     AS YSP 
Sbjct: 1496 SASTPSQSPSMTPWGQGATPAY---SSSYSPGNLMGSGATPGGPSFSPSGASDASGYSPN 1552

Query: 1724 SPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPG 1782
               +SP   S S   P+ SP  P+   +   +    +P Y+P SP  +P++  YSP++P 
Sbjct: 1553 YSQWSPQPGSPSSPGPAMSPYIPSPVGAHSPSYSPSSPTYAPPSPSLTPASPNYSPTSPT 1612

Query: 1783 YSPSSTSQYTP 1793
            YSP+ST+ Y+P
Sbjct: 1613 YSPTSTN-YSP 1622


>gi|397477903|ref|XP_003846225.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1 [Pan paniscus]
          Length = 1719

 Score = 1869 bits (4841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 984/1728 (56%), Positives = 1235/1728 (71%), Gaps = 121/1728 (7%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRG---------------------- 1285
            N +  K +  +E     +DDVFL+ IESNMLT+M L+G                      
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1286 ------------------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                              V+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQGA-TPAYG-----AWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPXGYTP 1610

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
             SP+YSPTSPSYSPTSPSYSPTSP+Y P +P + P +  + P           YSPTSP 
Sbjct: 1611 QSPSYSPTSPSYSPTSPSYSPTSPNYIPITPQHHPATARHHPA------IHLLYSPTSPT 1664

Query: 1610 YSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1665 YSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1712



 Score =  114 bits (285), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 111/230 (48%), Positives = 141/230 (61%), Gaps = 12/230 (5%)

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 1591
            Y    PT  P      PT   +          SP+ +P +   +P   ++SP+  S  +P
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTP 1541

Query: 1592 TSPSYSPTSPS-YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
             +  +SP++ S  S  SP YSP + + +P SP     S  Y P SP     SPSYSPTSP
Sbjct: 1542 GAAGFSPSAASDASGFSPGYSP-AWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSP 1598

Query: 1651 SYSPTSP-SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS--LAY 1707
            +Y P SP  Y+P SP+YSPTSP YSPTSPSYSPTSP Y P +P ++P +A++ P+  L Y
Sbjct: 1599 AYEPRSPXGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYIPITPQHHPATARHHPAIHLLY 1658

Query: 1708 SPSSPRLSPASP-YSPTSPNYSPTS---SSYSPTSPSYSPSSPTYSPSSP 1753
            SP+SP  SP SP YSPTSP YSPTS   S+YSPTSP YSP+SPTYS +SP
Sbjct: 1659 SPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSP 1708



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 98/240 (40%), Gaps = 87/240 (36%)

Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT------- 1627
            Y    P+  P   +  PT   +          SPA +P +   +P   A+SP+       
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTP 1541

Query: 1628 -SPSYSPT--------SPSYSPT-------------------------SPSYSPTSPSYS 1653
             +  +SP+        SP YSP                          SPSYSPTSP+Y 
Sbjct: 1542 GAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYE 1601

Query: 1654 PTSP-----------------------------SYSPTSPAYSPTSPG--------YSPT 1676
            P SP                             +Y P +P + P +          YSPT
Sbjct: 1602 PRSPXGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYIPITPQHHPATARHHPAIHLLYSPT 1661

Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSP 1736
            SP+YSPTSP YSPTSP+Y+P S K S    YSP+SP       YSPTSP YS TS + SP
Sbjct: 1662 SPTYSPTSPKYSPTSPTYSPTSPKGS---TYSPTSP------GYSPTSPTYSLTSPAISP 1712



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/202 (31%), Positives = 92/202 (45%), Gaps = 27/202 (13%)

Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPAYSP 1668
            Y    P   P   A  PT   +          SP+ +P +   +P   ++SP+     +P
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTP 1541

Query: 1669 TSPGYSPTSPS-YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY 1727
             + G+SP++ S  S  SP YSP             PS  Y PS        P    SP+Y
Sbjct: 1542 GAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPS--------PGGAMSPSY 1593

Query: 1728 SPTSSSYSPTSP-SYSPSSPTYSPSSPYNAGGGNP------DYSPSSPQYSPSAG----- 1775
            SPTS +Y P SP  Y+P SP+YSP+SP  +           +Y P +PQ+ P+       
Sbjct: 1594 SPTSPAYEPRSPXGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYIPITPQHHPATARHHPA 1653

Query: 1776 ----YSPSAPGYSPSSTSQYTP 1793
                YSP++P YSP+S  +Y+P
Sbjct: 1654 IHLLYSPTSPTYSPTS-PKYSP 1674


>gi|188532151|gb|ACD63087.1| RNA polymerase II largest subunit [Nicotiana tabacum]
          Length = 1010

 Score = 1868 bits (4840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 883/1010 (87%), Positives = 944/1010 (93%), Gaps = 10/1010 (0%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPMFHIGFMK VLSI+R VCFNCSKILADE+D KFKQA++IRNPKNRLKK+LDAC
Sbjct: 1    HLELAKPMFHIGFMKPVLSILRCVCFNCSKILADEEDPKFKQAMRIRNPKNRLKKMLDAC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            KNKTKCEGGDEIDV G++ E P+KK++GGCGAQQPK++I+GMKM+AEYK Q+KK+DD EQ
Sbjct: 61   KNKTKCEGGDEIDVRGEEPEAPVKKSRGGCGAQQPKISIDGMKMVAEYKLQKKKSDDPEQ 120

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP----------I 251
            +PEPVERKQ L+AERVL +LKR+SDEDC LLGLNP+YARPDWMILQ LP          +
Sbjct: 121  MPEPVERKQQLSAERVLSILKRVSDEDCLLLGLNPEYARPDWMILQALPIPPPPVRPSVM 180

Query: 252  PPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 311
                 R  DDLTHQLAMIIRHNENL+RQERNGAPAHIISEFAQLLQFHIATYFDN+LPGQ
Sbjct: 181  MDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIISEFAQLLQFHIATYFDNDLPGQ 240

Query: 312  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 371
            PRATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA
Sbjct: 241  PRATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 300

Query: 372  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL 431
            LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD HLEL
Sbjct: 301  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLEL 360

Query: 432  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 491
            GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN
Sbjct: 361  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 420

Query: 492  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 551
            MHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN
Sbjct: 421  MHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 480

Query: 552  ILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDT 611
            ILMWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQINL R +AWH D++KG +T GDT
Sbjct: 481  ILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQINLLRYSAWHNDSEKGPITPGDT 540

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
             VRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS
Sbjct: 541  QVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 600

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDTIADA TME IN+TIS AK+ VK LIK AQ+K LE EPGRTMMESFEN+VNQVLN
Sbjct: 601  IGIGDTIADASTMEKINETISNAKSKVKELIKAAQEKQLEAEPGRTMMESFENRVNQVLN 660

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARD+AGSSA+KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+DRT
Sbjct: 661  KARDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRT 720

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK
Sbjct: 721  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 780

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q LDSLK KKS FD  + +E+D+
Sbjct: 781  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKAKKSTFDDLYAYEIDD 840

Query: 912  ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
             NWNP+YML E I+DLKTI+E+R VFDAEVQKL+ADR QL TEIA +GD+SWPLPVN++R
Sbjct: 841  PNWNPSYMLPEAIEDLKTIREIRSVFDAEVQKLQADRKQLGTEIAVTGDNSWPLPVNIQR 900

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            L+ NAQKTFK+D RR SDMHPME+VEAVDKLQERLKVVPG+D LS+EAQKNATLFFNILL
Sbjct: 901  LVLNAQKTFKIDFRRRSDMHPMEIVEAVDKLQERLKVVPGDDYLSMEAQKNATLFFNILL 960

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            RS  ASKRVLKE+RL+REAF+WVIGEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 961  RSALASKRVLKEYRLSREAFDWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1010


>gi|308229948|gb|ADO24381.1| RNA polymerase II large subunit, partial [Drosophila cardini]
          Length = 1870

 Score = 1862 bits (4823), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1035/1922 (53%), Positives = 1319/1922 (68%), Gaps = 199/1922 (10%)

Query: 10   AEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCE 67
            A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +C+
Sbjct: 2    APLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQ 61

Query: 68   TCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-ALK 126
            TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  +K
Sbjct: 62   TCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPRNPKIKEIVMK 121

Query: 127  IR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIEGM 183
             +  P+ RL  + D CK KT CEGG+++D+   + + +P KK   GGCG  QP +   G+
Sbjct: 122  SKGQPRKRLAYVYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIRRTGL 181

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
             + AE+K     N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARPDW
Sbjct: 182  DLTAEWK---HVNEDSQ------EKKIIVSAERVWEILKHITDEECFILGMDPKYARPDW 232

Query: 244  MILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            MI+ VLP+PP  VRP+          DDLTH+LA II+ N  LR+ E +GA AH+I E  
Sbjct: 233  MIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENI 292

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
            ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVI
Sbjct: 293  KMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVI 352

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            TPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD+G
Sbjct: 353  TPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRDNG 409

Query: 414  QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
            +R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STFR+
Sbjct: 410  ERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRM 469

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL  
Sbjct: 470  NLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTA 529

Query: 534  CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
             RK+TKRD FI ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N+ R
Sbjct: 530  VRKMTKRDVFITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIR 589

Query: 594  TAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
            T + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+G D 
Sbjct: 590  THSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDI 649

Query: 650  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
            A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +  
Sbjct: 650  AGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYTEIQTAIKKAKDDVINVIQKAHNME 709

Query: 710  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
            LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INISQ+
Sbjct: 710  LEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQV 769

Query: 770  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
             ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGR
Sbjct: 770  IACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGR 829

Query: 830  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
            EGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E Q
Sbjct: 830  EGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQ 889

Query: 890  TLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
             + ++K+    F+K F+F+     W N  YM + + DD+  IKE+ D  DA +Q+LE++ 
Sbjct: 890  NMPTVKLSNKVFEKRFKFD-----WTNERYMRKVFTDDV--IKEMTDSSDA-IQELESEW 941

Query: 949  YQLATE------IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
             +L T+      I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V+  V  L
Sbjct: 942  DKLVTDRDNLRTIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVQGL 1001

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
             ER  +V G D +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF
Sbjct: 1002 LERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRF 1061

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K 
Sbjct: 1062 QQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKA 1121

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PSL+VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  Y
Sbjct: 1122 PSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVY 1181

Query: 1183 YEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADK 1242
            YEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNADK
Sbjct: 1182 YEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADK 1239

Query: 1243 LILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV------------- 1286
            L+LRIRIMN+E  K +  DE+    EDD+FL+ IE+NML++M L+G+             
Sbjct: 1240 LVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1299

Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                       +++ V+   DVD  RT+SN + EI +VLGIEAV
Sbjct: 1300 DSKKRIVITDTGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAV 1359

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEE
Sbjct: 1360 RKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1419

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYM 1437
            TVD+L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S M
Sbjct: 1420 TVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSM 1479

Query: 1438 EG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSP 1492
             G     +  G TP+ +P   TP+ +   +P Y FSP   +S +T        GG +FSP
Sbjct: 1480 LGGTAMFIGGGSTPSMTP-PMTPWVN-CHTPRY-FSPPGHVSAMTP-------GGPSFSP 1529

Query: 1493 TSSPGYSPSSPGYSPSSP----------------GYSPTSPGYSPTSPGYSPTSPGYSPT 1536
            +++   S  SP +SP+ P                     SP YSPTSP Y+ +SPG +  
Sbjct: 1530 SAASDASGMSPSWSPAHPGSSPSSPGLSMSPYYQASPSVSPSYSPTSPNYTASSPGGA-- 1587

Query: 1537 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1596
            SP YSP+SP YSPTSP Y+  SP Y+  +P+++  S  YSP+S  YSPTSP YSPTS   
Sbjct: 1588 SPNYSPASPNYSPTSPVYAAASPRYA--TPNFNAQSTGYSPSSSGYSPTSPVYSPTSNYQ 1645

Query: 1597 SPTSPSYSPT-SPAYSPTSP----------------------------------AYSPTS 1621
            S  SPS++ + S  YSP +                                    YSPTS
Sbjct: 1646 S--SPSFAGSGSNMYSPGNAYSPSSSNYSPNSPSYSPVSPSYSPSSPSYSPTSPCYSPTS 1703

Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY--------------- 1666
            P+YSPTSPSY+P +PSYSPTSP+YS  SP YSP SP+YS T   Y               
Sbjct: 1704 PSYSPTSPSYTPVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1762

Query: 1667 -SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
             SP SP Y+P SP YSP SP YSPTSP Y+P S ++SPS  YSP+       S YS TSP
Sbjct: 1763 GSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSATSP 1816

Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPGY 1783
             YSP  S YSP+S  YSP+SPTY+P++         +YSP+SP YSP+A   YSP++P Y
Sbjct: 1817 RYSPNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPTSPAY 1868

Query: 1784 SP 1785
            SP
Sbjct: 1869 SP 1870


>gi|33326207|gb|AAQ08513.1| RNA polymerase II largest subunit [Pinus nigra]
          Length = 1013

 Score = 1861 bits (4821), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 878/1013 (86%), Positives = 948/1013 (93%), Gaps = 13/1013 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HL LAKPM+HIGF+KTVLSI+R VCFNCS+ILADEDDH+FKQALK++NPK+RLKK+LD C
Sbjct: 1    HLXLAKPMYHIGFLKTVLSILRCVCFNCSRILADEDDHRFKQALKVKNPKHRLKKVLDCC 60

Query: 142  KNKTKCEGGDEIDV-PGQDGEEPLKKNK-GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            KNKTKCEGGD ID   GQDG+E +KK + GGCGAQQPK+TI+GMK+IAEYKA RKK D+Q
Sbjct: 61   KNKTKCEGGDVIDEDQGQDGDEEVKKKRHGGCGAQQPKITIDGMKIIAEYKAPRKKADEQ 120

Query: 200  EQL-PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP-------- 250
            EQL PEP ERKQ L+AERVL VLKRI+DE+CQ+LGLNPKYARPDWMILQVLP        
Sbjct: 121  EQLMPEPAERKQQLSAERVLNVLKRITDEECQMLGLNPKYARPDWMILQVLPVPPPPVRP 180

Query: 251  --IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
              +     R  DDLTHQLAMIIRHNENL++QE+NGAPAHII+EFAQLLQFHIATYFDNEL
Sbjct: 181  SVMMDTTSRSEDDLTHQLAMIIRHNENLKKQEKNGAPAHIITEFAQLLQFHIATYFDNEL 240

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
            PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INIDQLGVPW
Sbjct: 241  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPW 300

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIALNLTYPETVTPYN+ERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHH
Sbjct: 301  SIALNLTYPETVTPYNMERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHH 360

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD
Sbjct: 361  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 420

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV
Sbjct: 421  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 480

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
            FMNILMWWEDFDGK+P PTI KPRP+WTGKQVFNLIIPKQINL RT+AWH++++ G++T 
Sbjct: 481  FMNILMWWEDFDGKIPAPTIYKPRPIWTGKQVFNLIIPKQINLIRTSAWHSESESGVITP 540

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            GDTLVRIEKGE++SGTLCKKTLGTS+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 
Sbjct: 541  GDTLVRIEKGEVISGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQ 600

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDTIADA TME IN+TISKAKN VK LIK AQ+K LE EPGRTMMESFEN+VNQ
Sbjct: 601  GFSIGIGDTIADAATMEVINETISKAKNEVKMLIKAAQEKQLEAEPGRTMMESFENRVNQ 660

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
            VLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF 
Sbjct: 661  VLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFD 720

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR
Sbjct: 721  GRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 780

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK EF+  +++E
Sbjct: 781  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFENVYKYE 840

Query: 909  MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
            +D+ENWNP+YML E+++DLKTI+E ++VFDAEVQKLE+DR QL  EIA SGD+SWPLPVN
Sbjct: 841  LDQENWNPSYMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGMEIAPSGDNSWPLPVN 900

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            LKRLIWN+QKTFK+D RRPSDMHPME+VEA+D+LQERLKVVPG+D +S+EAQKNATLFFN
Sbjct: 901  LKRLIWNSQKTFKIDARRPSDMHPMEIVEAIDRLQERLKVVPGDDLMSIEAQKNATLFFN 960

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            ILLRSTFASKRVLKE+ LTREAFEWV+GEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 961  ILLRSTFASKRVLKEYHLTREAFEWVVGEIESRFLQSLVAPGEMIGCVAAQSI 1013


>gi|33326205|gb|AAQ08512.1| RNA polymerase II largest subunit [Cycas revoluta]
          Length = 1013

 Score = 1860 bits (4817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 877/1013 (86%), Positives = 946/1013 (93%), Gaps = 13/1013 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLEL KPM+HIGF+KTVLSI+RSVCFNCS+ILADE+DH+FKQALKI+NPK+RL+K+LD C
Sbjct: 1    HLELVKPMYHIGFLKTVLSILRSVCFNCSRILADEEDHRFKQALKIKNPKHRLRKVLDCC 60

Query: 142  KNKTKCEGGDEIDV-PGQDGEEPLKKNK-GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            KNKTKCEGGDEID    QDGEE  KK + GGCGAQQPK++I+GMK+IAEYKA RKK D+Q
Sbjct: 61   KNKTKCEGGDEIDDDQAQDGEEMTKKKRHGGCGAQQPKISIDGMKIIAEYKATRKKADEQ 120

Query: 200  EQL-PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP-------- 250
            EQL PEPVERKQ L+AE+VL +LKRISDEDCQ+LGLNPKYARPDWMILQVLP        
Sbjct: 121  EQLMPEPVERKQQLSAEKVLDILKRISDEDCQMLGLNPKYARPDWMILQVLPIPPPPVRP 180

Query: 251  --IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
              +     R  DDLTHQLAMIIRHNENLRRQERNGAPAHII+EFAQLLQFHIATYFDN+L
Sbjct: 181  SVMMDTTSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFHIATYFDNDL 240

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
            PGQPRATQRSGRPIKSIC+RLKAKEGRIRGNLMGKRVDFSARTVITPDP INID+LGVPW
Sbjct: 241  PGQPRATQRSGRPIKSICNRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPW 300

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIALNLTYPETVTPYNIERLKELV+ GPHPPPGKTGA+YIIRDDGQRLDLRYLKKSSDHH
Sbjct: 301  SIALNLTYPETVTPYNIERLKELVDNGPHPPPGKTGARYIIRDDGQRLDLRYLKKSSDHH 360

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            LELGYKVERHL DGDFVLFNRQPSLHKMSIMGHRI+IMPYSTFRLNLSVTSPYNADFDGD
Sbjct: 361  LELGYKVERHLMDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGD 420

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV
Sbjct: 421  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 480

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
            FMNILMWWE+FDGK+P PTILKPRPLWTGKQVFNLIIP+QINL R +AWH++++ G +T 
Sbjct: 481  FMNILMWWENFDGKIPSPTILKPRPLWTGKQVFNLIIPRQINLIRYSAWHSESETGFITP 540

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            GDT VRIEKGE+LSGTLCKKTLGTS+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 
Sbjct: 541  GDTCVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQ 600

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDTIADA TMETIN+TISKAK  V  LI+ A  K+LE EPGRTMMESFEN+VNQ
Sbjct: 601  GFSIGIGDTIADAATMETINETISKAKAEVNQLIQLAHQKALEAEPGRTMMESFENRVNQ 660

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
            VLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 
Sbjct: 661  VLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFF 720

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             R+LPHFT+DDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR
Sbjct: 721  GRSLPHFTRDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 780

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMK+SEF+  +R+E
Sbjct: 781  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRSEFENVYRYE 840

Query: 909  MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
            +D ENWNP+YML E+++DLKTI+E ++VFDA+VQKLEADR QL TEIA SGD+SWP+PVN
Sbjct: 841  IDNENWNPSYMLPEHVEDLKTIREFQNVFDAQVQKLEADRRQLGTEIAPSGDNSWPMPVN 900

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            LKRLIWNAQKTFK+D R+PSDMHPME+VEAVDKLQERLKVVPG+D +S+EAQKNATLFFN
Sbjct: 901  LKRLIWNAQKTFKIDLRKPSDMHPMEIVEAVDKLQERLKVVPGDDLMSIEAQKNATLFFN 960

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            ILLRSTFASKRVLKE+RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 961  ILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1013


>gi|392572014|gb|EIW65186.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Trametes versicolor FP-101664 SS1]
          Length = 1748

 Score = 1850 bits (4792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 966/1776 (54%), Positives = 1237/1776 (69%), Gaps = 116/1776 (6%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLGTID 61
            +F YS A + KVR VQFGILSP+EI+  SV +IEH E  +    KPK GGL DPR+GTID
Sbjct: 5    QFAYSAAPIRKVREVQFGILSPEEIKAYSVAKIEHPEVMDETTHKPKLGGLMDPRMGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R  KC+TC   M+ECPGHFGH+ELA+P+FH GF+  V  I+  +C NC ++ AD  D  F
Sbjct: 65   RNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGRLKADSSDPTF 124

Query: 122  KQALK-IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
               ++ IR+PK R++ + + CK+K  CE  DE      + ++  KK  GGCGA QP++  
Sbjct: 125  ADRIRHIRDPKARMQAVWNYCKSKMICEP-DEPKDDNDNADDEAKKGHGGCGATQPQVRK 183

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EG+K+  +YK  R K++D+   P+    K+      V   LK++S+ D  LLGL+ +YAR
Sbjct: 184  EGLKLFVQYK--RGKDEDESLQPD----KRLFPPHEVYTALKKVSESDLHLLGLSVEYAR 237

Query: 241  PDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            P+WMIL V           + +    +R  DDLT++L  II+ + N+RR E+ GAPAH+I
Sbjct: 238  PEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVI 297

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            +EF QLLQFH+ATY DN++ G P+A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSA
Sbjct: 298  NEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSA 357

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVIT DP + +D++GVP SIA+NLT+PE VTPYNI  L+ELV  GP   PG   A+Y++
Sbjct: 358  RTVITGDPNLELDEVGVPRSIAMNLTFPERVTPYNITYLQELVRNGPTVYPG---ARYVV 414

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD G+R+DLRY  K +D  L+ G+ VERHL DGDFVLFNRQPSLHKMS+M HR+++MPYS
Sbjct: 415  RDTGERIDLRY-NKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYS 473

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFRLNLSVT PYNADFDGDEMNMHVPQS ETRAE+ ++  VP+ I+SPQ+N+PVMGIVQD
Sbjct: 474  TFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQD 533

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL G RK T RDTF+E     NIL+W  D+DG VP P I+KP+PLWTGKQ+ ++ IP+ I
Sbjct: 534  TLCGVRKFTLRDTFLEWSQVQNILLWVPDWDGSVPTPAIIKPKPLWTGKQILSMCIPRGI 593

Query: 590  NLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            N+FR+    ++N   D G++        IE G+++ G + KKT+G S G L+HV++ E G
Sbjct: 594  NIFRSPDPKSNNPVFDDGMM--------IENGDIVFGIVEKKTVGASQGGLVHVVFREKG 645

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
            P+A R      Q +VNYWL  N FSIGIGDTIAD KTM  I D I+  K  V  ++  A 
Sbjct: 646  PEATRTLFTGLQQVVNYWLFHNGFSIGIGDTIADHKTMTYIQDQIAMRKQEVLKVVDDAY 705

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
               L+  PG T+ ESFE +V + LN ARD++G  AQK+L E NN+K MV AGSKGSFINI
Sbjct: 706  HARLKAAPGMTIRESFEKRVERELNLARDQSGQYAQKNLKEDNNVKQMVVAGSKGSFINI 765

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQM+ CVGQQ+VEGKRIPFGF  RTLPHFTKDD+ PE+RGFVENSYLRGLTPQEFFFHAM
Sbjct: 766  SQMSVCVGQQSVEGKRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHAM 825

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
             GREGLIDTAVKT+ETGYIQRRLVKA+ED+ V YDGTVRNSLGD+IQF+YGEDGMD  +I
Sbjct: 826  AGREGLIDTAVKTAETGYIQRRLVKALEDVSVCYDGTVRNSLGDLIQFVYGEDGMDGAFI 885

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
            E Q +++  +  ++F+  +R ++ +    + P  +LQ  +DD  +  EL+   D E  +L
Sbjct: 886  EKQNIETFALNHAQFEHDYRVDVTDPSGGFLPG-VLQVGLDD--SSLELQSKLDEEYAQL 942

Query: 945  EADRYQLATEIATSGDSSWP--LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
              DR  L   I    D S P  LPVNL+R++ NA + F +D R+PSD+ P+ +V++V +L
Sbjct: 943  SGDRKLLRDWIFPRTDPSAPRYLPVNLQRIVQNAIQIFHIDRRKPSDLDPIYIVDSVREL 1002

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
              RL VV GE  L  EAQ+NATL F + LR+T A++RVL+ + L REAFEW +GEIE++F
Sbjct: 1003 CNRLVVVRGEGALPKEAQENATLLFRMHLRATLATRRVLERYHLNREAFEWTLGEIETKF 1062

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             QS+  PGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA  IKT
Sbjct: 1063 NQSVAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKT 1122

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PSLSV+L+P +      AKNVQ  L +T+LR+VT + E+WYDPDP  TIIEED  FV+S+
Sbjct: 1123 PSLSVYLEPEIAKDAILAKNVQQELAFTSLRTVTASVEIWYDPDPSSTIIEEDQVFVESF 1182

Query: 1183 YEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
            + +PDED+  +   +SPWLLR+EL+R  M+D+KL+MA VA ++ + F  DL  I+++DN+
Sbjct: 1183 FAIPDEDVEQKLHLMSPWLLRLELDRAKMIDRKLTMAYVASRVAENFKTDLFVIWSEDNS 1242

Query: 1241 DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR---------------- 1284
            +KL++R R++     K E +    E+D+FL+++E+ ML +++LR                
Sbjct: 1243 EKLVIRCRVLGG-MDKDEEDLGQVEEDIFLRQLENTMLGQVSLRGVPGIQRVFLLEHDKI 1301

Query: 1285 ---------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
                                 GVNL  VMC + VD +RT SN+ +EI +VLGIEA R A+
Sbjct: 1302 SVTAAGNIEARGDKEWVLETDGVNLKTVMCIDGVDFKRTYSNNCVEIFDVLGIEAARAAI 1361

Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
            + ELR VI FDGSYVNYRHLA+LCD MT+RG LMAITRHGINR DTG +MRCSFEETV+I
Sbjct: 1362 MRELRNVIEFDGSYVNYRHLALLCDLMTHRGTLMAITRHGINRADTGALMRCSFEETVEI 1421

Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI-------ELQLPSY 1436
            L++AA   E D   G+ ENI+ GQ+AP+GTG   + L+ +MLK+ I       +  L + 
Sbjct: 1422 LMEAAAVGEKDDCHGIAENILFGQMAPMGTGAFDVALDIDMLKDVIVDHRLPVQTMLAAQ 1481

Query: 1437 MEGLEFGMTPARSPVSGTPYHDG---------MMSPGYLFSPNLRLSPVTDAQFSPYVGG 1487
            ++G   GMTP +  V+ TPY            M      FSP L ++   +A  S  + G
Sbjct: 1482 VDG---GMTPGQ--VAMTPYDSNSPTWSQDVTMKGEAAAFSP-LAVNGGEEAASSFSLLG 1535

Query: 1488 MAFSPTSSPGYSPSSPGYSPSSP-GYSPTSPGYSPTSPGYSPTSP-GYSP--TSPTYSPS 1543
            +  SP  + G SP++PGYSPSSP  YSPTSP Y   SP    TSP G SP  TSP Y  S
Sbjct: 1536 IGMSPMGAGGMSPAAPGYSPSSPNAYSPTSP-YLAQSPFTGGTSPMGTSPYATSPFYDRS 1594

Query: 1544 ----SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1599
                SP YSPTSPA + TSP YSPTSP YSPTSPS+SPTSP YSP SPS+SPTSP YSPT
Sbjct: 1595 HGATSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPT 1654

Query: 1600 SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1659
            SPS+SP SP YSPT    SPTSP YSPTSP+ SP SP YSPTSP+YSP SP+YSP SP+Y
Sbjct: 1655 SPSFSPASPRYSPTPAQMSPTSPKYSPTSPA-SPASPRYSPTSPTYSPASPAYSPASPAY 1713

Query: 1660 SPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN 1695
            SPTSP +SP+SP  +    S +    +YS TSPS++
Sbjct: 1714 SPTSPQWSPSSPAQNQNGSSSTNRGHSYS-TSPSWD 1748



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/270 (47%), Positives = 167/270 (61%), Gaps = 29/270 (10%)

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPT-SP 1601
            +PG    +P Y   SP++S    +    + ++SP + +     + S+S      SP  + 
Sbjct: 1487 TPGQVAMTP-YDSNSPTWS-QDVTMKGEAAAFSPLAVNGGEEAASSFSLLGIGMSPMGAG 1544

Query: 1602 SYSPTSPAYSPTSP-AYSPTSP--AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
              SP +P YSP+SP AYSPTSP  A SP +   SP   S   TSP Y     S+  TSP+
Sbjct: 1545 GMSPAAPGYSPSSPNAYSPTSPYLAQSPFTGGTSPMGTSPYATSPFYDR---SHGATSPT 1601

Query: 1659 YSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS 1718
            YSPTSPA + TSPGYSPTSP YSPTSP++SPTSP Y+PQS    PS  +SP+SPR SP S
Sbjct: 1602 YSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQS----PS--FSPTSPRYSPTS 1655

Query: 1719 P-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GY 1776
            P +SP SP YSPT +  SPTSP YSP+SP  SP+SP         YSP+SP YSP++  Y
Sbjct: 1656 PSFSPASPRYSPTPAQMSPTSPKYSPTSPA-SPASPR--------YSPTSPTYSPASPAY 1706

Query: 1777 SPSAPGYSPSS--TSQYTPQTNRDDSTTKD 1804
            SP++P YSP+S   S  +P  N++ S++ +
Sbjct: 1707 SPASPAYSPTSPQWSPSSPAQNQNGSSSTN 1736


>gi|395326417|gb|EJF58827.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Dichomitus squalens LYAD-421 SS1]
          Length = 1749

 Score = 1847 bits (4784), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 970/1784 (54%), Positives = 1232/1784 (69%), Gaps = 124/1784 (6%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLGTID 61
            +F YS A V KVR VQFGILSP+EI+  SV +IEH E  +    KPK GGL DPR+GTID
Sbjct: 5    QFAYSAAPVRKVREVQFGILSPEEIKAYSVAKIEHPEVMDETTHKPKMGGLMDPRMGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R  KC+TC   M+ECPGHFGH+ELA+P+FH GF+  V  I+  +C NC ++ AD  D  F
Sbjct: 65   RNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGRLKADSSDPAF 124

Query: 122  KQALK-IRNPKNRLKKILDACKNKTKCEGGDEIDV-PGQDGEEPLKKNKGGCGAQQPKLT 179
               ++ +R+PK R++ + + CK+K  CE  +  D   G D +EP KK  GGCGAQQP + 
Sbjct: 125  ADRIRHVRDPKARMQAVWNYCKSKMICEPDEPKDENEGGDQDEP-KKGHGGCGAQQPLIR 183

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
             EG+K+  +YK  R K++D+   P+    K+      V   LK+IS+ D  LLGL+  YA
Sbjct: 184  KEGLKLFVQYK--RGKDEDESLQPD----KRLFPPHEVYTALKKISESDLHLLGLSVDYA 237

Query: 240  RPDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            RP+WMIL V           + +    +R  DDLT++L  II+ + N+RR E+ GAPAH+
Sbjct: 238  RPEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHV 297

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            I+EF QLLQFH+ATY DN++ G P+A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFS
Sbjct: 298  INEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFS 357

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVIT DP + +D++GVP SIA+NLT+PE VTPYNI  L+ELV  GP   PG   A+Y+
Sbjct: 358  ARTVITGDPNLELDEVGVPRSIAMNLTFPERVTPYNIAYLQELVRNGPTVYPG---ARYV 414

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            +RD G+R+DLRY  K +D  L+ G+ VERHL DGDFVLFNRQPSLHKMS+M HR+++MPY
Sbjct: 415  VRDTGERIDLRY-NKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPY 473

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSVT PYNADFDGDEMNMHVPQS ETRAE+ ++  VP+ I+SPQ+N+PVMGIVQ
Sbjct: 474  STFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQ 533

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL G RK T RDTF++ +   NIL+W  D+DG VP P I+KP+P+WTGKQ+ ++ IP+ 
Sbjct: 534  DTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGTVPTPAIIKPKPMWTGKQLLSMCIPRG 593

Query: 589  INLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            IN+FR     ++N   D G++        IE G+++ G + KKT+G S G L+HV++ E 
Sbjct: 594  INIFRAPDPKSNNPVFDDGMM--------IENGDIVFGVVEKKTVGASQGGLVHVVFREK 645

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP+A R      Q +VNYWL  N FSIGIGDTIAD  TM+ I   I++ K NV  ++  A
Sbjct: 646  GPEATRTLFTGLQQVVNYWLFHNGFSIGIGDTIADRGTMDYIQKQIAERKQNVLQIMDDA 705

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                L P PG T+ ESFE KV + LN ARD +G  AQK L E NN+K MV AGSKGSFIN
Sbjct: 706  YHDRLRPSPGMTIRESFEKKVERELNLARDHSGQYAQKHLKEDNNVKQMVVAGSKGSFIN 765

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQM+ CVGQQ+VEGKRIPFGF  RTLPHFTKDD+ PE+RGFVENSYLRGLTPQEFFFHA
Sbjct: 766  ISQMSVCVGQQSVEGKRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHA 825

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+ V YDGTVRNSLGD+IQF+YGEDGMD  +
Sbjct: 826  MAGREGLIDTAVKTAETGYIQRRLVKALEDVQVCYDGTVRNSLGDLIQFIYGEDGMDGAF 885

Query: 886  IESQTLDSLKMKKSEFDKAFRFEM-DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
            IE Q +++  +  ++F+  FR ++ D +      +LQ  +DD  +  EL+   D E  +L
Sbjct: 886  IERQNIETFALNNTQFEHDFRVDVTDPQGGFLPGVLQAGLDD--SSLELQAKLDEEFAQL 943

Query: 945  EADRYQLATEIATSGDSSWP--LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
              DR  L T I  S D + P  LPVNL+R++ NA + F +D R+PSD+ P  ++++V +L
Sbjct: 944  TEDRQLLRTWIFPSTDPAAPRYLPVNLQRIVQNAIQIFHIDRRKPSDLEPTYIIDSVREL 1003

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
              RL VV GE  LS EAQ NATL F + LR+TFA++RVL+ + L REAFEWV+GE+E++F
Sbjct: 1004 CNRLVVVRGEGSLSKEAQLNATLLFRMHLRATFATRRVLERYHLNREAFEWVLGEVETKF 1063

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             Q++  PGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA  IKT
Sbjct: 1064 NQAVAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKT 1123

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PSL+V+L+P        AKNVQ  L +T+LR+VT A E+WYDPDP  TII +D +FV ++
Sbjct: 1124 PSLNVYLEPEFARDALLAKNVQQELAFTSLRTVTAAVEIWYDPDPSSTIIPDDEDFVHAF 1183

Query: 1183 YEMPDEDIAPEK--ISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
            + +PDE++  +   +SPWLLR+EL+R  M+D+KL+M  VA +I Q F  DL  I+++DN+
Sbjct: 1184 FAIPDEEVEQKLHLMSPWLLRLELDRAKMIDRKLTMTYVANRIAQSFKTDLFVIWSEDNS 1243

Query: 1241 DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-------------- 1286
            +KL++R R++   A K E +    E+D+FL+++E+ ML  + LRGV              
Sbjct: 1244 EKLVVRCRVLGG-ADKDEDDLGQVEEDIFLRQLENTMLNSVELRGVPGIQRAFLLEHDKI 1302

Query: 1287 -----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
                                   NL  VMC + VD +RT SN+ +E+ +VLGIEA R A+
Sbjct: 1303 NISPTGSIEARSEKEWVLETDGVNLKTVMCIDGVDFKRTYSNNCVEVFDVLGIEAARAAI 1362

Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
            + ELR VI FDGSYVNYRHLA+LCD MT+RG LMAITRHGINR DTG +MRCSFEETV+I
Sbjct: 1363 MKELRNVIEFDGSYVNYRHLALLCDLMTHRGTLMAITRHGINRADTGALMRCSFEETVEI 1422

Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI-------ELQLPSY 1436
            L++AA   E D   G+ ENI+ GQ+AP+GTG   + L+ +MLK+ I       +  L + 
Sbjct: 1423 LMEAAAVGEKDDCHGIAENILFGQMAPMGTGAFEVALDIDMLKDVIVDHRLPVQTMLAAQ 1482

Query: 1437 MEGLEFGMTPARSPVSGTPYHDGMMSPGYL-----------FSPNLRLSPVTDAQFSPYV 1485
             +G   GMTP +  V+ TPY     SP +            FSP L ++   +A  S  +
Sbjct: 1483 ADG---GMTPGQ--VAMTPYDSN--SPMWAQDVSFKGETAAFSP-LAVNGGEEAPASYNL 1534

Query: 1486 GGMAFSPTSSPG-YSPSSPGYSPSSP-GYSPTSPGYSPTSPGYSPTSP-GYSP--TSPTY 1540
             G   SP  + G  SP+  GYSPSSP  YSPTSP Y   SP    TSP G SP  TSP Y
Sbjct: 1535 TGFGISPMGAHGAMSPAGAGYSPSSPNAYSPTSP-YLAQSPFAGATSPMGTSPYATSPFY 1593

Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
              S   +  TSP YSPTSP+ + TSP YSPTSP YSPTSPS+SPTSP YSP SPS+SPTS
Sbjct: 1594 DRS---HGATSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTS 1650

Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
            P YSPTSP++SP SP YSPTSPA        SPTSP YSPTSP+ SP SP YSPTSP+YS
Sbjct: 1651 PRYSPTSPSFSPASPRYSPTSPA------QMSPTSPKYSPTSPT-SPASPRYSPTSPAYS 1703

Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            PTSPAYSP SP YSPTSP +SP+SP  +    +    S   SPS
Sbjct: 1704 PTSPAYSPASPAYSPTSPQWSPSSPAQNQNGTTNRGHSYSTSPS 1747



 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 131/271 (48%), Positives = 165/271 (60%), Gaps = 31/271 (11%)

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSP- 1601
            +PG    +P Y   SP ++    S+   + ++SP + +    +P SY+ T    SP    
Sbjct: 1488 TPGQVAMTP-YDSNSPMWA-QDVSFKGETAAFSPLAVNGGEEAPASYNLTGFGISPMGAH 1545

Query: 1602 -SYSPTSPAYSPTSP-AYSPTSP--AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
             + SP    YSP+SP AYSPTSP  A SP + + SP   S   TSP Y     S+  TSP
Sbjct: 1546 GAMSPAGAGYSPSSPNAYSPTSPYLAQSPFAGATSPMGTSPYATSPFYDR---SHGATSP 1602

Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP-SLAYSPSSPRLSP 1716
            +YSPTSPA + TSPGYSPTSP YSPTSP++SPTSP Y+PQS  +SP S  YSP+SP    
Sbjct: 1603 TYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSF-- 1660

Query: 1717 ASP----YSPTSP-NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYS 1771
             SP    YSPTSP   SPTS  YSPTSP+ SP+SP YSP+SP         YSP+SP YS
Sbjct: 1661 -SPASPRYSPTSPAQMSPTSPKYSPTSPT-SPASPRYSPTSPA--------YSPTSPAYS 1710

Query: 1772 PSA-GYSPSAPGYSPSSTSQ-YTPQTNRDDS 1800
            P++  YSP++P +SPSS +Q     TNR  S
Sbjct: 1711 PASPAYSPTSPQWSPSSPAQNQNGTTNRGHS 1741



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 121/276 (43%), Positives = 158/276 (57%), Gaps = 41/276 (14%)

Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYS 1604
            G +P   A +P    Y   SP ++    S+   + ++SP + +    +P SY+ T    S
Sbjct: 1486 GMTPGQVAMTP----YDSNSPMWA-QDVSFKGETAAFSPLAVNGGEEAPASYNLTGFGIS 1540

Query: 1605 PTSP--AYSPTSPAYSPTSP-AYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1659
            P     A SP    YSP+SP AYSPTSP  + SP + + SP   S   TSP Y     S+
Sbjct: 1541 PMGAHGAMSPAGAGYSPSSPNAYSPTSPYLAQSPFAGATSPMGTSPYATSPFYDR---SH 1597

Query: 1660 SPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
              TSP YSPTSP  + TSP YSPTSP YSPTSPS+             SP+SPR SP SP
Sbjct: 1598 GATSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSF-------------SPTSPRYSPQSP 1644

Query: 1720 -YSPTSPNYSPTSSSYSPTSPSYSPSSPT--------YSPSSPYNAGGGNPDYSPSSPQY 1770
             +SPTSP YSPTS S+SP SP YSP+SP         YSP+SP +    +P YSP+SP Y
Sbjct: 1645 SFSPTSPRYSPTSPSFSPASPRYSPTSPAQMSPTSPKYSPTSPTSP--ASPRYSPTSPAY 1702

Query: 1771 SPSA-GYSPSAPGYSPSS--TSQYTPQTNRDDSTTK 1803
            SP++  YSP++P YSP+S   S  +P  N++ +T +
Sbjct: 1703 SPTSPAYSPASPAYSPTSPQWSPSSPAQNQNGTTNR 1738


>gi|45935327|gb|AAS79685.1| RNA polymerase II large subunit [Taxus canadensis]
          Length = 1013

 Score = 1846 bits (4781), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 873/1013 (86%), Positives = 941/1013 (92%), Gaps = 13/1013 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPM+HIGF+KT+LSI+R VCFNCS+ILADEDDH+FKQALK++NPK+RLKK+LD C
Sbjct: 1    HLELAKPMYHIGFLKTILSILRCVCFNCSRILADEDDHRFKQALKVKNPKHRLKKVLDCC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPL--KKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            KNKTKCEGGD ID       +    KK +GGCGAQQPK+ I+GMK+IAEYKA RKK DD 
Sbjct: 61   KNKTKCEGGDVIDEDQGQDGDDEVKKKRQGGCGAQQPKIYIDGMKIIAEYKAPRKKADDP 120

Query: 200  EQL-PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP-------- 250
            EQL PEPVERKQ L+AERVL VLKRI+DE+CQ+LGLNPKY+RPDWMILQVLP        
Sbjct: 121  EQLMPEPVERKQQLSAERVLSVLKRITDEECQMLGLNPKYSRPDWMILQVLPVPPPPVRP 180

Query: 251  --IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
              +     R  DDLTHQLAMIIRHNE L++QE+ GAPAHIISEFAQLLQFHIATYFDNEL
Sbjct: 181  SVMMDTTSRSEDDLTHQLAMIIRHNETLKKQEKTGAPAHIISEFAQLLQFHIATYFDNEL 240

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
            PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INID+LGVPW
Sbjct: 241  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPW 300

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHH
Sbjct: 301  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHH 360

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI+IMPYSTFRLNLSVTSPYNADFDGD
Sbjct: 361  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGD 420

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV
Sbjct: 421  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 480

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
            FMNILMWWEDFDGK+P PTILKPRPLWTGKQVFNLIIPKQINL R +AWHA+++ G +T 
Sbjct: 481  FMNILMWWEDFDGKIPAPTILKPRPLWTGKQVFNLIIPKQINLIRQSAWHAESETGFITP 540

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            GDT+VRIEKGE+LSGTLCKKTLGTS+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 
Sbjct: 541  GDTIVRIEKGEVLSGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQ 600

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDTIADA TME IN+TISKAK+ VK LIK AQDK LE EPGRTMMESFEN+VNQ
Sbjct: 601  GFSIGIGDTIADAATMEVINETISKAKHEVKQLIKAAQDKQLEAEPGRTMMESFENRVNQ 660

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
            VLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF 
Sbjct: 661  VLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFD 720

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR
Sbjct: 721  GRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 780

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK EF+  +R+E
Sbjct: 781  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFENVYRYE 840

Query: 909  MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
            +D+ENWNP+YML E++DDLKTI+E ++VFDAE+QKLE+DR QL TEIAT+GD+SWP+PVN
Sbjct: 841  IDQENWNPSYMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIATTGDNSWPMPVN 900

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            LKRLIWNAQKTFK+DPR+ SDMHPME+VEA+DKLQERLKVVPG+D +S+EAQKNATLFFN
Sbjct: 901  LKRLIWNAQKTFKIDPRKRSDMHPMEIVEAIDKLQERLKVVPGDDLMSIEAQKNATLFFN 960

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            ILLRSTFASKRVLKE+ LT+EAFEWV+GEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 961  ILLRSTFASKRVLKEYHLTKEAFEWVVGEIESRFLQSLVAPGEMIGCVAAQSI 1013


>gi|353235719|emb|CCA67728.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
            [Piriformospora indica DSM 11827]
          Length = 1796

 Score = 1845 bits (4778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 982/1805 (54%), Positives = 1235/1805 (68%), Gaps = 143/1805 (7%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT-ERGKPKPGGLSDPRLGTIDR 62
            +F  S A + +++ VQFGILSPDEI+  SV +IE  E   E+ K K GGL+DPR+GTIDR
Sbjct: 5    QFAQSVAPIRQIKEVQFGILSPDEIKAYSVAKIEFPEVMDEQQKQKEGGLADPRMGTIDR 64

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILAD-EDDHKF 121
              KC TC   MAECPGHFGH+ELA+P+FHIGF+  V  I+ S+C NC K+  D   D + 
Sbjct: 65   NFKCATCGEGMAECPGHFGHIELARPVFHIGFLGKVKKILESICVNCGKLKVDPYTDPQL 124

Query: 122  KQALKI--RNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPL--KKNKGGCGAQQPK 177
               LK+   NPK R+  +   CK K  CE  DE+    Q+G  P+  KK  GGCG  QP+
Sbjct: 125  ASKLKLTRNNPKARMAVVWSVCKGKMTCEP-DEVKEDEQEGGPPVEVKKGHGGCGHHQPQ 183

Query: 178  LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
            +  EG+K+   YK   K+NDD+E  P  V+ K+ ++A+ V  V ++IS  D ++LGL+  
Sbjct: 184  IRKEGLKLFFNYK---KQNDDEESRPT-VQEKRQVSAQDVFSVFRKISTTDLEMLGLSEA 239

Query: 238  YARPDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
            YARPDWMIL V           + +     R  DDLT++LA IIR + N+RR E+ GAP 
Sbjct: 240  YARPDWMILTVLPVPPPPVRPSISVDGGVRRSEDDLTYKLAEIIRASGNVRRSEQEGAPP 299

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            HI+SE+ QLLQ+H+ATY DN++ G P+A Q+SGRPIK+I +RLK KEGR+RGNLMGKRVD
Sbjct: 300  HIVSEYEQLLQYHVATYMDNDIAGVPQAMQKSGRPIKAIRARLKGKEGRLRGNLMGKRVD 359

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP + +DQ+GVP SIA+ LTYPE VT YNI+ L ELV  GP   PG   A+
Sbjct: 360  FSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTRYNIQYLTELVRRGPQEYPG---AR 416

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            Y+IRD G+R+DL+Y K+S D  L+ G+ VERHL DGD+VLFNRQPSLHKMS+M HR+KIM
Sbjct: 417  YVIRDTGERIDLKYNKRS-DSLLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKIM 475

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            PYSTFRLNLSVT PYNADFDGDEMN+HVPQS ETRAE+ ++  VP+ IVSPQ+N+PVMGI
Sbjct: 476  PYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGI 535

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDTL G RK T RDTF++     N+L+W   +DG VP PTILKP+PLWTGKQ+ ++ IP
Sbjct: 536  VQDTLCGIRKFTLRDTFVDWIQVQNLLLWLPGWDGIVPTPTILKPKPLWTGKQLLSMCIP 595

Query: 587  KQINLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            + IN+ R     + N   D G++        IE GE++ G + KKT+G + G L+HV++ 
Sbjct: 596  RGINVLRLPESRSHNPPADDGMM--------IENGEIIFGVVDKKTVGATQGGLVHVVFR 647

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
            E GP+  R      Q +VN+WL  N FSIGIGDTIAD +TM+ +++ I  AK  V+ LI+
Sbjct: 648  EKGPEICRDLFSGLQMIVNFWLFHNGFSIGIGDTIADNQTMQGVSEAILSAKQKVQKLIE 707

Query: 704  QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
             A +  L+ EPG T+ ESFE+ VN  LN ARD AG  AQ+SL +SNN+K MV AGSKGSF
Sbjct: 708  DASNDRLKAEPGMTIRESFESHVNMHLNKARDTAGKMAQESLKDSNNVKQMVVAGSKGSF 767

Query: 764  INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
            INI+QM+  VGQQ+VEGKRIPFGF  R+LPHFTKDD+ PESRGFVENSYLRGLTP EFFF
Sbjct: 768  INIAQMSVAVGQQSVEGKRIPFGFRHRSLPHFTKDDFSPESRGFVENSYLRGLTPSEFFF 827

Query: 824  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
            HAM GREGLIDTA+KT+ETGYIQRRLVKA+ED+MV YDGTVRNSLGD++QF YGEDG+D 
Sbjct: 828  HAMAGREGLIDTAIKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDILQFTYGEDGIDG 887

Query: 884  VWIESQTLDSLKMKKSEFDKAFRFEM-DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQ 942
             +IE Q++ +  +    F++ +R ++ D +    + +LQ  ++D     EL+   DAE +
Sbjct: 888  GFIERQSVATYHLSNQAFERKYRVDVTDPKLGFAHGVLQPGLEDHSL--ELQMKLDAEWE 945

Query: 943  KLEADRYQLATEIATSGD--SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            +L  DR  L   I    D  +   +PVN++R+I NAQ+ F +D R  SD+HP E+ + + 
Sbjct: 946  ELRRDRKLLREFIFRYSDPGADRYMPVNVRRVIQNAQQIFHIDRREASDLHPGEIYDKLR 1005

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
            +L  RL VV G+D LS+EAQ NAT+ F + LR+TFA+K VL+E+ LT++AFEWV+GEIE+
Sbjct: 1006 ELMSRLIVVRGDDELSLEAQNNATMMFKMHLRATFATKPVLEEYHLTKQAFEWVLGEIET 1065

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RF QSLV PGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA  I
Sbjct: 1066 RFNQSLVQPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNI 1125

Query: 1121 KTPSLSVFLKPGV--NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEF 1178
            KTP L+V+L+  +    T   AK VQ  L +TTLR++T   E+ YDP+P  T+IEED +F
Sbjct: 1126 KTPILTVYLQDEIAREETGVLAKAVQTELAFTTLRTITSTVEIHYDPEPTTTVIEEDKDF 1185

Query: 1179 VKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
            V +++ +PD +I  +   +SPW+LR+EL+R  M+D+KL MA VA KI ++F  DL  I++
Sbjct: 1186 VDAFFAIPDPEIEAKLHVLSPWVLRLELDRSKMLDRKLEMAYVASKIGEKFTSDLFIIWS 1245

Query: 1237 DDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---------- 1286
            +DN++KLI+R RI++       ++D S  DD+FL+++E  +L  + LRGV          
Sbjct: 1246 EDNSEKLIIRCRIVHTPEKMEAMSDFS--DDLFLRQLEVTLLNTVDLRGVPGVDRVFLVK 1303

Query: 1287 -------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLG 1315
                                           NL  V+  + VD RRTTSN   EI  VLG
Sbjct: 1304 KDKVITRPDGTLQNKALTDAEREWVLETDGVNLKKVLAVDGVDFRRTTSNSCTEIFSVLG 1363

Query: 1316 IEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRC 1375
            IEA R +LL ELR VI FDGSYVNYRHLAIL D MT +G+L AITRHGINR DTG +MRC
Sbjct: 1364 IEAARASLLRELRGVIEFDGSYVNYRHLAILVDLMTNKGNLTAITRHGINRADTGALMRC 1423

Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNA-IELQLP 1434
            SFEETV+IL+DAA   E D  RG+ EN+M GQ+AP+GTG   + L+ EMLK+  +E  +P
Sbjct: 1424 SFEETVEILMDAASLGEKDDCRGIAENVMFGQIAPMGTGSFDVALDMEMLKDVMVESTVP 1483

Query: 1435 -SYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPV-------TDAQFSP-YV 1485
              +M G                  DG  +PG + +P    SP+         A FSP ++
Sbjct: 1484 IPHMMG---------------SVMDGAATPGGVMTPYDNNSPMPYELKVDHQAAFSPLHM 1528

Query: 1486 GGMAFSPTSS-PGYSPS---------SP-GYSPSSP-GYSPTSPGYSPTSPGYSPTSPGY 1533
             G   +P+    GY+PS         SP GYSPSSP  YSPTSP  +  SP Y   +   
Sbjct: 1529 NGTDDAPSFDWQGYAPSPMRPASGGMSPHGYSPSSPRHYSPTSPNITAMSP-YHHMAGAT 1587

Query: 1534 SPTSPTY----------SPSSPGYSP--TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1581
            SP SP            S +SP YSP  TSP YSPTSP YSPTSP YSPTSP YSPTSP 
Sbjct: 1588 SPFSPMQQSPWFDRTRASATSPAYSPGMTSPGYSPTSPRYSPTSPGYSPTSPVYSPTSPK 1647

Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
            YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPT
Sbjct: 1648 YSPTSPKYSPTSPRYSPTSPKYSPTSPRYSPTSPTYSPTSPHYSPTSPKYSPTSPRYSPT 1707

Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPA----YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
            SP YSPTSP YSPTSP YSPTSPA     SP SP YSPTSP+Y+P SP YSP SP Y+P 
Sbjct: 1708 SPKYSPTSPRYSPTSPQYSPTSPARPAGMSPASPRYSPTSPAYAPKSPQYSPASPQYSPT 1767

Query: 1698 SAKYS 1702
            S ++S
Sbjct: 1768 SPQWS 1772



 Score =  107 bits (266), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 82/177 (46%), Positives = 106/177 (59%), Gaps = 12/177 (6%)

Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSP-AYSPTSPGYSPTSPSY 1680
            A+SP   + +  +PS+     + SP  P+    SP  YSP+SP  YSPTSP  +  SP Y
Sbjct: 1522 AFSPLHMNGTDDAPSFDWQGYAPSPMRPASGGMSPHGYSPSSPRHYSPTSPNITAMSP-Y 1580

Query: 1681 SPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA--SP-YSPTSPNYSPTSSSYSPT 1737
               +   SP SP    Q + +      S +SP  SP   SP YSPTSP YSPTS  YSPT
Sbjct: 1581 HHMAGATSPFSPM---QQSPWFDRTRASATSPAYSPGMTSPGYSPTSPRYSPTSPGYSPT 1637

Query: 1738 SPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTP 1793
            SP YSP+SP YSP+SP      +P YSP+SP+YSP++  YSP++P YSP+S   Y+P
Sbjct: 1638 SPVYSPTSPKYSPTSP-KYSPTSPRYSPTSPKYSPTSPRYSPTSPTYSPTS-PHYSP 1692


>gi|45935329|gb|AAS79686.1| RNA polymerase II large subunit [Podocarpus macrophyllus]
          Length = 1013

 Score = 1843 bits (4774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 872/1013 (86%), Positives = 940/1013 (92%), Gaps = 13/1013 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPM+HIGF+KT+LSI+R VCFNCS+ILADEDDH+FKQALK++NPK+RLKK+LD C
Sbjct: 1    HLELAKPMYHIGFLKTILSILRCVCFNCSRILADEDDHRFKQALKVKNPKHRLKKVLDCC 60

Query: 142  KNKTKCEGGDEIDVPG-QDGEEPLKKNK-GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            KNKTKCEGGD ID    QDG+E +KK + GGCGAQQPK+ I+GMK++AEYKA RKK DDQ
Sbjct: 61   KNKTKCEGGDAIDEDQVQDGDEEVKKKRQGGCGAQQPKIYIDGMKIVAEYKAPRKKADDQ 120

Query: 200  EQL-PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP-------- 250
            EQL PEP ERKQ L AERVL VLKRISDE+CQ+LG NPKYARPDWMILQVLP        
Sbjct: 121  EQLMPEPAERKQQLPAERVLNVLKRISDEECQMLGFNPKYARPDWMILQVLPVPPPPVRP 180

Query: 251  --IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
              +     R  DDLTHQLAMIIRHNE L++QE+ GAPAHIISEFAQLLQFHIATYFDNEL
Sbjct: 181  AVMMDTTSRSEDDLTHQLAMIIRHNETLKKQEKTGAPAHIISEFAQLLQFHIATYFDNEL 240

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
            PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INID+LGVPW
Sbjct: 241  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPW 300

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHH
Sbjct: 301  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHH 360

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI+IMPYSTFRLNLSVTSPYNADFDGD
Sbjct: 361  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGD 420

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV
Sbjct: 421  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 480

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
            FMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQINL R +AWHA+++ G LTA
Sbjct: 481  FMNILMWWEDFDGKIPSPAILKPRPLWTGKQVFNLIIPKQINLIRYSAWHAESETGFLTA 540

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            GDT+V IEKGE+LSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL HTQWLVNYWLLQ 
Sbjct: 541  GDTVVHIEKGEVLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLSHTQWLVNYWLLQQ 600

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FS+GIGDTIADA TME IN+TIS+AKN VK LIK AQ+K LE EPGRTMMESFEN+VNQ
Sbjct: 601  GFSMGIGDTIADAATMEVINETISRAKNEVKQLIKAAQEKQLEAEPGRTMMESFENRVNQ 660

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
            VLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF 
Sbjct: 661  VLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFD 720

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR
Sbjct: 721  GRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 780

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMK+ EF+  +++E
Sbjct: 781  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFENVYKYE 840

Query: 909  MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
            +D+ENWNP YML E+++DLKTI+E ++VFDAEVQKLE+DR QL TEIA SGD+S P+PVN
Sbjct: 841  VDQENWNPIYMLPEHVEDLKTIREFQNVFDAEVQKLESDRRQLGTEIAPSGDNSCPMPVN 900

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            LKRLIWNAQKTFK+DPR+PSDMHPME+VEA+D+LQERLKVVPG+D +S+EAQKNATLFFN
Sbjct: 901  LKRLIWNAQKTFKIDPRKPSDMHPMEIVEAIDRLQERLKVVPGDDLISIEAQKNATLFFN 960

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            ILLRSTFASKRVLKE+ LT+EAFEWV+GEIESRFLQSLVAPGEMIGCVAAQSI
Sbjct: 961  ILLRSTFASKRVLKEYHLTKEAFEWVVGEIESRFLQSLVAPGEMIGCVAAQSI 1013


>gi|254571371|ref|XP_002492795.1| RNA polymerase II largest subunit B220 [Komagataella pastoris GS115]
 gi|238032593|emb|CAY70616.1| RNA polymerase II largest subunit B220 [Komagataella pastoris GS115]
 gi|328353197|emb|CCA39595.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
            7435]
          Length = 1743

 Score = 1841 bits (4769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1010/1764 (57%), Positives = 1269/1764 (71%), Gaps = 96/1764 (5%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTI 60
            ++FPYS A +  V+ VQFG+LSP+EIR +SVV+IE+ E  +  R +P+ GGL+DP+LG+I
Sbjct: 2    SQFPYSSAPLRSVKEVQFGLLSPEEIRAISVVKIEYPEIMDESRQRPREGGLNDPKLGSI 61

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DR  KC+TC   MAECPGHFGH+ELAKP+FHIGF+  +  +   +C NC K+L DE +  
Sbjct: 62   DRNFKCQTCGEGMAECPGHFGHMELAKPVFHIGFIPKIKKVCECICMNCGKLLLDETNPT 121

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
              QA++IR+PK R   +   CK K  CE     D P  +  E    ++GGCG  QP +  
Sbjct: 122  MAQAIRIRDPKKRFNAVWQLCKTKMVCEA----DAPVDEYSEQKVVSRGGCGNTQPVVRK 177

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            +GMK+   +K  +    D++  PE    ++ LT   +L V K IS EDC  LG N  YAR
Sbjct: 178  DGMKLWGTWK--KSGFSDRDAQPE----RKLLTPGEILNVFKHISPEDCFRLGFNEDYAR 231

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            P+WMI+ VLP+PPP VRPS          DDLTH+L+ I++ N N+++ E +G+P HII+
Sbjct: 232  PEWMIITVLPVPPPQVRPSIAMDETTQGQDDLTHKLSDILKANINVQKLEMDGSPQHIIN 291

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  QLLQFH+ATY DN++ GQP+A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSAR
Sbjct: 292  EVEQLLQFHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSAR 351

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVI+ DP + +DQ+GVP SIA  L+YPETVT YNI RL E V  GP+  PG   AKY+IR
Sbjct: 352  TVISGDPNLELDQVGVPISIAKTLSYPETVTQYNIHRLTEYVRNGPNEHPG---AKYVIR 408

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G R+DLRY K++ D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYST
Sbjct: 409  DNGDRIDLRYHKRAGDIVLQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYST 468

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+PVMGIVQDT
Sbjct: 469  FRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDT 528

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L G RK+T RDTFIE +  MN+L W   +DG VPQP ILKP+PLWTGKQ+ ++ IP  I+
Sbjct: 529  LCGVRKMTLRDTFIEYEQVMNMLFWVPSWDGVVPQPAILKPKPLWTGKQLLSIAIPSGIH 588

Query: 591  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
            L RT     D    +L+  D  + I  G+++ G + KKT+G+  G LIH +  E GP   
Sbjct: 589  LQRT-----DGGNSLLSPKDNGMLIVDGKVMFGVVDKKTVGSGGGGLIHTVMREKGPKIC 643

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
             +  G+ Q +VNYWLL N FSIGIGD IADA TM+ I   IS AK  V+ +I +AQ   L
Sbjct: 644  AELFGNIQKVVNYWLLHNGFSIGIGDAIADASTMKEITHAISSAKEQVQEIIYKAQHNEL 703

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            E +PG T+ ESFE +V++ LN ARD AG SA+ +L + NN+K MV+AGSKGSFINI+QM+
Sbjct: 704  ELKPGMTLRESFEGEVSRTLNDARDSAGRSAEMNLKDLNNVKQMVSAGSKGSFINIAQMS 763

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQ VEGKRI FGF DR+LPHFTKDD+ PES+GFVENSYLRGLTPQEFFFHAM GRE
Sbjct: 764  ACVGQQMVEGKRIAFGFADRSLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAMAGRE 823

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLGD+IQFLYGEDG+D   +E QT
Sbjct: 824  GLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFLYGEDGLDGTQVERQT 883

Query: 891  LDSLKMKKSEFDKAFRFE-MDEEN-WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
            +D++      F K +  + MDE+N   P+ +  EY  D+    EL+   ++E ++L +DR
Sbjct: 884  IDTIPGSDKAFHKRYYVDLMDEKNSIKPDVI--EYAADILGDVELQKELNSEYEQLVSDR 941

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
              L   +  +GD +WPLPVNL+R+I NAQ+ F +D  + SD+   E++  V  L ++L V
Sbjct: 942  KFLREIVFVNGDHNWPLPVNLRRIIQNAQQIFHLDRAKASDLTIPEIIHGVRDLCKKLFV 1001

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            + GE+ L  EAQ+NAT  F  L+R+  A++R+L+E RL R+AFEWV+G IE++F +SLV 
Sbjct: 1002 LRGENELIKEAQQNATSLFQCLVRARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLVH 1061

Query: 1069 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1128
            PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTP+L+V+
Sbjct: 1062 PGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1121

Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1188
            L   +    E+AK +Q ++EYTTL++VT ATE++YDPDP  T+IEED + V++Y+ +PDE
Sbjct: 1122 LDREIALDIEKAKVIQSSIEYTTLKNVTSATEIYYDPDPTSTVIEEDFDTVEAYFSIPDE 1181

Query: 1189 DIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
             +    +K SPWLLR+EL+R  M+DK+L+M  VA+KI++ F DDL  ++++DNADKLI+R
Sbjct: 1182 KVEETIDKQSPWLLRLELDRARMLDKQLTMNQVADKISEVFSDDLFVMWSEDNADKLIIR 1241

Query: 1247 IRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR---------------------- 1284
             R++ D  PK    +  AE+D  LK+IE++ML  +ALR                      
Sbjct: 1242 CRVIRD--PKAMDEELEAEEDQMLKRIEAHMLDLIALRGIPGISKVYMVKHKVSVPDESG 1299

Query: 1285 -------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
                         G+NL  VM    VD+ RT SN  +EI+ VLGIEA R +L  E+  VI
Sbjct: 1300 EYKNEELWALETDGINLAEVMAVPGVDSSRTYSNSFVEILSVLGIEATRSSLYKEILNVI 1359

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
            +FDGSYVNYRH+A+L D MT RG+LMAITRHGINR DTG +MRCSFEETV+IL +A   A
Sbjct: 1360 AFDGSYVNYRHMALLVDVMTSRGYLMAITRHGINRADTGALMRCSFEETVEILFEAGAAA 1419

Query: 1392 ESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS-YMEGLEFGMTPARSP 1450
            E D  RGV+EN+MLGQLAP+GTG   + +++++L +     LP+ Y   +      A + 
Sbjct: 1420 ELDDCRGVSENVMLGQLAPMGTGAFDVMIDEKLLTS-----LPADYAPTMPLFKGKA-TQ 1473

Query: 1451 VSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYV---------GGMA-FSPTSSPGYSP 1500
             S TPY +        +        V D  FSP           GG+  ++   SP Y P
Sbjct: 1474 GSATPYDNNAQ-----YDDEFNHDDVADVMFSPMAETGSGDDRSGGLTEYAGIQSP-YQP 1527

Query: 1501 SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS 1560
            +SPG S +SPG++PTSPG++PTSP YSPTSPGYSPTSP+YSP+SP YSPTSP+YSPTSPS
Sbjct: 1528 TSPGLSATSPGFAPTSPGFAPTSPRYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1587

Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1620
            YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP YSPTSP YSPTSP YSPT
Sbjct: 1588 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPT 1647

Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1680
            SP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP Y
Sbjct: 1648 SPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY 1707

Query: 1681 SPTSPTYSPTSPSYNPQSAKYSPS 1704
            SPTSP YSPTSP Y+P S +YSPS
Sbjct: 1708 SPTSPQYSPTSPQYSPASPQYSPS 1731



 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 159/239 (66%), Positives = 183/239 (76%), Gaps = 17/239 (7%)

Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1627
            Y+     Y PTSP  S TSP ++PTSP ++PTSP YSPTSP YSPTSP+YSPTSP+YSPT
Sbjct: 1518 YAGIQSPYQPTSPGLSATSPGFAPTSPGFAPTSPRYSPTSPGYSPTSPSYSPTSPSYSPT 1577

Query: 1628 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTY 1687
            SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP YSPTSP YSPTSP Y
Sbjct: 1578 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPQY 1637

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
            SPTSP Y             SP+SP+ SP SP YSPTSP YSPTS  YSPTSP YSP+SP
Sbjct: 1638 SPTSPQY-------------SPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSP 1684

Query: 1747 TYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTPQTNRDDSTTKD 1804
             YSP+SP      +P YSP+SPQYSP++  YSP++P YSP+S  QY+P  +  +  +K+
Sbjct: 1685 QYSPTSP-QYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPAS-PQYSPSRHSPNGESKE 1741


>gi|45935325|gb|AAS79684.1| RNA polymerase II large subunit [Thuja occidentalis]
          Length = 1013

 Score = 1841 bits (4768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 872/1013 (86%), Positives = 940/1013 (92%), Gaps = 13/1013 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPM+HIGF+KT+LSI+R VCFNCS+ILADE+DH+FKQALK++NPK+RL+K+LD C
Sbjct: 1    HLELAKPMYHIGFLKTILSILRCVCFNCSRILADEEDHRFKQALKVKNPKHRLRKVLDCC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPL--KKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            KNKTKCEGGD ID       +    KK +GGCGAQQPK+ I+GMK++AEYKA RKK DD 
Sbjct: 61   KNKTKCEGGDVIDEDQGQDGDDEVKKKRQGGCGAQQPKIYIDGMKIMAEYKAPRKKADDP 120

Query: 200  EQL-PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP-------- 250
            EQL PEPVERKQ L+AERVL VLKRISDE+CQLLGLNPKYARPDWMILQVLP        
Sbjct: 121  EQLMPEPVERKQQLSAERVLSVLKRISDEECQLLGLNPKYARPDWMILQVLPVPPPPVRP 180

Query: 251  --IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
              +     R  DDLTHQLAMIIRHNENL++QE+ GAPAHIISEFAQLLQFHIATYFDNEL
Sbjct: 181  SVMMDTTSRSEDDLTHQLAMIIRHNENLKKQEKTGAPAHIISEFAQLLQFHIATYFDNEL 240

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
            PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INID+LGVPW
Sbjct: 241  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPW 300

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLKKSSDHH
Sbjct: 301  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLKKSSDHH 360

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI+IMPYSTFRLNLSVTSPYNADFDGD
Sbjct: 361  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRLNLSVTSPYNADFDGD 420

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV
Sbjct: 421  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 480

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
            FMNILMWWEDFDGK+P PTILKPRPLWTGKQVFNLIIPKQINL R +AWHA+++ G +T 
Sbjct: 481  FMNILMWWEDFDGKIPAPTILKPRPLWTGKQVFNLIIPKQINLIRYSAWHAESETGFITP 540

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            GDT VRIEKGE++SGTLCKKTLGTS+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 
Sbjct: 541  GDTCVRIEKGEVISGTLCKKTLGTSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQ 600

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDTIADA TME IN+TISKAKN VK LIK AQDK LE EPGRTMMESFEN+VNQ
Sbjct: 601  GFSIGIGDTIADAATMEVINETISKAKNEVKQLIKAAQDKQLEAEPGRTMMESFENRVNQ 660

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
            VLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF 
Sbjct: 661  VLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFD 720

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR
Sbjct: 721  GRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 780

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMK+ EF+  +R+E
Sbjct: 781  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKRKEFENVYRYE 840

Query: 909  MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
            +D+ENWNP+YML E++DDLKTI+E ++VFDAE+QKLE+DR QL TEIA SGD+SWP+PVN
Sbjct: 841  IDQENWNPSYMLPEHVDDLKTIREFQNVFDAELQKLESDRRQLGTEIAPSGDNSWPMPVN 900

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            LKRLIWNAQKTFK+DPR+ SDMHPME+VEA+DKLQERLKVVPG+D +S+EAQKNATLFFN
Sbjct: 901  LKRLIWNAQKTFKIDPRKRSDMHPMEIVEAIDKLQERLKVVPGDDLISIEAQKNATLFFN 960

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            ILLRSTFASKRVLKE+ LT+EAFEWV+GEIESRFLQS+VAPGEMIGCVAAQSI
Sbjct: 961  ILLRSTFASKRVLKEYHLTKEAFEWVVGEIESRFLQSIVAPGEMIGCVAAQSI 1013


>gi|328849370|gb|EGF98552.1| hypothetical protein MELLADRAFT_50989 [Melampsora larici-populina
            98AG31]
          Length = 1786

 Score = 1840 bits (4767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 960/1770 (54%), Positives = 1226/1770 (69%), Gaps = 127/1770 (7%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTID 61
            +F +S A   +VR +QFGI+SPDEI+  SV +IEH ET E G   PK GGLSDPR+GTID
Sbjct: 5    QFVHSSAPTRRVRTIQFGIMSPDEIKGFSVAKIEHPETYEEGGVHPKVGGLSDPRMGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADED-DHK 120
            R MKC+TC  +M+ CPGHF H+ELA+P++H+GF+  V  I+  VC  C K+ +D + D  
Sbjct: 65   RNMKCQTCGEDMSTCPGHFAHIELARPVYHVGFLNRVKKILECVCVQCGKLKSDLNTDPV 124

Query: 121  FKQALK-IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK------KNKGGCGA 173
              Q ++  R+PK R   +   C+ K  CE  D  D   ++ EEP +      K  GGCG 
Sbjct: 125  LAQMVRRARDPKRRFVMVHKHCRGKNICEA-DANDEKPENPEEPPRPEDEQPKGHGGCGH 183

Query: 174  QQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
             QP++  EG+KM  +Y  ++ + DD+         ++ L A   L +L+RISDED ++LG
Sbjct: 184  AQPQIRKEGLKMFLQYTRRKGEEDDEGGHSLAGTERRPLPASDALSILRRISDEDLRILG 243

Query: 234  LNPKYARPDWMILQVL-----------PIPPPPVRPSDDLTHQLAMIIRHNENLRRQERN 282
            L+ + ARP+WM+L VL            +     R  DDLT++LA +I+ N+ +R+ E  
Sbjct: 244  LHAEEARPEWMVLTVLPIPPPPVRPSIAMDGGTSRGEDDLTYKLAEVIKANQAVRKFESE 303

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            GAPAH+I+EF  LLQ+HIATY DN+LPGQP+A Q+SGRP+KS+ SRLK KEGR+RGNLMG
Sbjct: 304  GAPAHVITEFETLLQWHIATYMDNDLPGQPQALQKSGRPVKSLRSRLKGKEGRLRGNLMG 363

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT DP + +DQ+GVP+SIA NLTYPE VTPYNI  L+ELV  GP   PG 
Sbjct: 364  KRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNITYLQELVRNGPTEYPG- 422

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              A+Y++RD G R+DLRY  K +D  L+ G+ VERHL DGD+VLFNRQPSLHKMS+M HR
Sbjct: 423  --ARYVVRDTGDRIDLRY-NKRADTFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMSHR 479

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            IK+MPYSTFRLNLSVT PYNADFDGDEMN+HVPQS ETRAE+ ++  VP+ IVSPQ+N+P
Sbjct: 480  IKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVSPQANKP 539

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            VMGIVQDTL G RK T RD F+++D   NIL+W   +DG VP P ILKP+PLWTGKQ+ +
Sbjct: 540  VMGIVQDTLCGVRKFTLRDCFMDRDFVQNILLWVPGWDGVVPPPAILKPKPLWTGKQILS 599

Query: 583  LIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            + IPK INLFR      D ++  +   D  + IE GE++ G + KKT+G S G +IHVI+
Sbjct: 600  MCIPKGINLFRD-----DENQTSIPVADKGMWIEDGEIIYGVVDKKTVGASQGGIIHVIF 654

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E GP+  R      Q +VNYWLL + FSIGIGDT+ D  TMETI   IS+AK  V N+I
Sbjct: 655  REKGPEVTRGLFSGIQMVVNYWLLHHGFSIGIGDTVPDKGTMETITKFISEAKLEVANVI 714

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
              AQ+  L+PEPG T+ ESFE KVN+ LN ARD AG SA++SL + NN+K MVTAGSKGS
Sbjct: 715  SMAQEDKLQPEPGMTIRESFEAKVNRALNMARDNAGRSAEQSLKDDNNVKQMVTAGSKGS 774

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
            FINISQM+ACVGQQ+VEGKRIP+GF  RTLPHFTKDDY PESRGFVENSYLRGLTPQEFF
Sbjct: 775  FINISQMSACVGQQSVEGKRIPYGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFF 834

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+MV YDGTVRNSLGD++QF+YGEDG+D
Sbjct: 835  FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVAYDGTVRNSLGDIVQFVYGEDGVD 894

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDEEN--WNPNYMLQEYIDDLKTIKELRDVFDAE 940
               +E Q  DS+++   +F++ FR ++ + +  + P  +LQ  +D   +   L+ + D E
Sbjct: 895  GGTVEYQNFDSVRLSHEKFERKFRVDVTDPSLTYKPG-VLQVGLD--SSSLTLQKILDGE 951

Query: 941  VQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
             ++L+ DR  L   I T G+   PLPVN++R++ NAQ+ F +D R+PSD+ P E+++ V 
Sbjct: 952  WEQLKEDRQSLRHFIFTDGNGRKPLPVNIRRIVQNAQQIFHIDFRKPSDLPPQEIIQMVH 1011

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L ER+ VV G+D LS  AQ NATL F ILLRS FA++RVL+E  L REAF WV+GEIE+
Sbjct: 1012 DLCERIIVVRGDDALSRAAQDNATLLFRILLRSNFATRRVLEEFHLNREAFVWVLGEIEA 1071

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RF QSL APGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA  I
Sbjct: 1072 RFNQSLAAPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVALNI 1131

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            KTPSL+V+L   +++  E AK++Q  L +T L++VT +T++ YDPDP  T++EEDV+FV 
Sbjct: 1132 KTPSLTVYLNEELSNDIEAAKDIQTELAHTNLKTVTASTQIIYDPDPKSTVVEEDVDFVD 1191

Query: 1181 SYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDD 1238
            +++ +PD+++  +  + SPWLLR+EL+R  M+DKKLSM+ VA +I + F  DL  I+++D
Sbjct: 1192 AFFAVPDDEVESQIDRQSPWLLRLELDRAKMLDKKLSMSFVASRIAEVFKSDLFIIWSED 1251

Query: 1239 NADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------------ 1286
            NA+KLI+R R M       + +D+  E+DVFL++IE  ML  ++LRGV            
Sbjct: 1252 NAEKLIIRCRAMQ-SGEDKDEDDDQVEEDVFLREIE-QMLGSISLRGVEGIQRVFMLQHN 1309

Query: 1287 -----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
                                   NL  V+C + VD  RT SN+ +EI+ VLGIEA R ++
Sbjct: 1310 RNYICQNGEFDRKTEWVLETDGINLKKVLCVDGVDPVRTVSNNCVEIMTVLGIEAARASV 1369

Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
            L ELR VI FDGSYVNYRHLA+LCD MT RG LMAITRHGINR DTGP+MRCSFEETV+I
Sbjct: 1370 LKELRNVIEFDGSYVNYRHLALLCDLMTNRGSLMAITRHGINRADTGPLMRCSFEETVEI 1429

Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKN-AIELQLPSYMEGLEF 1442
            L+DAA   E D+  GV EN++LGQLAP+GTG   + L+ EMLK+  I+ +LP   E    
Sbjct: 1430 LMDAAATGEKDHCTGVAENVLLGQLAPMGTGAFDVALDLEMLKDVVIDHRLPVAGE---- 1485

Query: 1443 GMTPARSPVSGTPYHDGMMSPGYLFSPNLRL-----------SPVTDAQFSPYV-----G 1486
                    + G  + DG M+PG   +P   L           +PV  A FSP +      
Sbjct: 1486 --------IMGGRFVDGAMTPGGGMTPYAELGDGRTPARFDDAPVPRAMFSPIITAGADD 1537

Query: 1487 GMAFSPTSSPGYSPSSP----------------GYSPS-SPGYSPTSPGYSPTSPGY-SP 1528
            G   S     GY   SP                 Y+P+ SP Y+PTSP +   SP   S 
Sbjct: 1538 GYGASNDIYGGYGGQSPYGAGGGTSPGYSPSSPSYNPAVSPAYTPTSPAWGGASPWMPSG 1597

Query: 1529 TSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1588
            TSPGYSPTSP    +SP +SP SP +SP SP++SP SP++SPTSPS+SP SP +SP+SP+
Sbjct: 1598 TSPGYSPTSPRMGLTSPRFSPASPNFSPASPNFSPASPAFSPTSPSFSPASPRFSPSSPN 1657

Query: 1589 YS-----PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
            YS      TSP YSPTSP+ SP+SP +SP SPA+SP SP YSP +  +SP SP++SP SP
Sbjct: 1658 YSAGIGLATSPRYSPTSPAMSPSSPKFSPASPAFSPASPKYSPATQRWSPQSPAFSPASP 1717

Query: 1644 SYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1673
             YSP SP+YSPTSP YSPTSP  SP SP +
Sbjct: 1718 KYSPASPAYSPTSPQYSPTSPQTSPQSPQW 1747


>gi|33326219|gb|AAQ08519.1| RNA polymerase II largest subunit [Psilotum nudum]
          Length = 1013

 Score = 1840 bits (4766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 863/1013 (85%), Positives = 942/1013 (92%), Gaps = 13/1013 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPMFHIG +KTVL+I+R VC+NCS+ILADE+DH+FKQA KIRNPK+RL+++LD C
Sbjct: 1    HLELAKPMFHIGVLKTVLTILRCVCYNCSRILADEEDHRFKQARKIRNPKHRLRRMLDCC 60

Query: 142  KNKTKCEGGDEIDV-PGQDGEEPLKKNK-GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            K K+KCEGGD+ID   G D EE  KK K GGCGAQQPK+TI+GMK+IAE+KA +KKN++Q
Sbjct: 61   KTKSKCEGGDDIDEDQGHDNEEAEKKKKHGGCGAQQPKITIDGMKIIAEFKASKKKNEEQ 120

Query: 200  EQ-LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRP 258
            +Q +PEPVERKQ L+AE+VL +LK+ISDEDC  LGLNPKYARPDWMILQVLPIPPP VRP
Sbjct: 121  DQYMPEPVERKQQLSAEKVLSILKQISDEDCVTLGLNPKYARPDWMILQVLPIPPPSVRP 180

Query: 259  S----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
            S          DDLTHQLAMIIRHN NL+RQE+NGAP HII+EFAQLLQFHIATYFDN+L
Sbjct: 181  SVMMDTSARSEDDLTHQLAMIIRHNNNLKRQEQNGAPTHIINEFAQLLQFHIATYFDNDL 240

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
            PGQPRATQRSGRPIKSIC RLKAKEGRIRGNLMGKRVDFSARTVITPDP INID+LGVPW
Sbjct: 241  PGQPRATQRSGRPIKSICQRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPW 300

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA+YIIR+DGQRLDLR+LKKSSD H
Sbjct: 301  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGARYIIREDGQRLDLRFLKKSSDRH 360

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH+I+IMP+STFRLNLSVTSPYNADFDGD
Sbjct: 361  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHKIRIMPFSTFRLNLSVTSPYNADFDGD 420

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV+GIVQDTLLGCRK+TKRDTFIEKDV
Sbjct: 421  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVIGIVQDTLLGCRKVTKRDTFIEKDV 480

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
            FMNILMWWEDFDGK+P PTILKP+PLWTGKQ+F+LIIPKQINL R +AWH D++ G +T 
Sbjct: 481  FMNILMWWEDFDGKIPAPTILKPKPLWTGKQLFSLIIPKQINLIRFSAWHLDSEVGEITP 540

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            GDT+VRIEKGEL+SGTLCKKTLGTS GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ+
Sbjct: 541  GDTVVRIEKGELISGTLCKKTLGTSGGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQH 600

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDTIADA TME IN++I+KAKN VK LIK AQ+K LE EPGRT MESFEN+VNQ
Sbjct: 601  GFSIGIGDTIADAATMEKINESIAKAKNEVKELIKMAQEKQLEAEPGRTTMESFENRVNQ 660

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
            VLN ARD+AGSSAQ+SLSESNN+KAMVTAGSKGSFINISQM ACVGQQNVEGKRIPFGFV
Sbjct: 661  VLNRARDDAGSSAQRSLSESNNVKAMVTAGSKGSFINISQMIACVGQQNVEGKRIPFGFV 720

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
            DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR
Sbjct: 721  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 780

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKAMED+MVKYDGTVRNSLGDVI+FLYGEDGMD+VWIESQ LDS+KMK  EFD+ + FE
Sbjct: 781  LVKAMEDVMVKYDGTVRNSLGDVIEFLYGEDGMDAVWIESQKLDSMKMKTKEFDRMYMFE 840

Query: 909  MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
            +D ENWNP+YML E+++DLKTI+E R+VFDAEVQKLEADR QL TEIA SGD+SWPLPVN
Sbjct: 841  IDSENWNPDYMLAEHVEDLKTIQEFRNVFDAEVQKLEADRRQLCTEIAPSGDNSWPLPVN 900

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            LKRLIWNAQK FKVD R+PSDMHPME+VEAVDKLQERLKVVPGED +S EAQKNATLFFN
Sbjct: 901  LKRLIWNAQKIFKVDFRKPSDMHPMEIVEAVDKLQERLKVVPGEDEISKEAQKNATLFFN 960

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            ILLRST ASKRVLKE+RLT+EAFEWVIGEIE+RFLQS+VAPGEMIGCVAAQSI
Sbjct: 961  ILLRSTLASKRVLKEYRLTKEAFEWVIGEIETRFLQSIVAPGEMIGCVAAQSI 1013


>gi|308229942|gb|ADO24378.1| RNA polymerase II large subunit, partial [Drosophila acutilabella]
          Length = 1845

 Score = 1840 bits (4765), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1021/1898 (53%), Positives = 1301/1898 (68%), Gaps = 197/1898 (10%)

Query: 21   GILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPG 78
            G+LSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +C+TC  NM ECPG
Sbjct: 1    GMLSPDEIRRMSVTEGGVQFAETLEGGRPKLGGLMDPRQGVIDRTSRCQTCAGNMTECPG 60

Query: 79   HFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-ALKIR-NPKNRLKK 136
            HFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  +K +  P+ RL  
Sbjct: 61   HFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVMKSKGQPRKRLAY 120

Query: 137  ILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIEGMKMIAEYKAQRK 194
            + D CK KT CEGG+++D+   + + +P KK   GGCG  QP +   G+ + AE+K    
Sbjct: 121  VYDLCKGKTICEGGEDMDLTKDNQQVDPNKKPGHGGCGHYQPSIRRTGLDLTAEWK---H 177

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
             N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARPDWMI+ VLP+PP 
Sbjct: 178  VNEDSQ------EKKIIVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVPPL 231

Query: 255  PVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
             VRP+          DDLTH+LA II+ N  LR+ E +GA AH+I E  ++LQFH+AT  
Sbjct: 232  AVRPAVVMFGAAKNQDDLTHKLADIIKANNELRKNEASGAAAHVIQENIKMLQFHVATLV 291

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + IDQ+
Sbjct: 292  DNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 351

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD+G+R+DLR+  KS
Sbjct: 352  GVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKS 408

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
            SD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STFR+NLS TSPYNAD
Sbjct: 409  SDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNAD 468

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL   RK+TKRD FI
Sbjct: 469  FDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFI 528

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DK 603
             ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N+ RT + H D  D 
Sbjct: 529  TREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEEDD 588

Query: 604  G---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
            G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+G D A +F G+ Q +
Sbjct: 589  GPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICFLELGHDIAGRFYGNIQTV 648

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            +N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +  LEP PG T+ +
Sbjct: 649  INNWLLLEGHSIGIGDTIADPQTYTEIQTAIKKAKDDVINVIQKAHNMELEPTPGNTLRQ 708

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INISQ+ ACVGQQNVEG
Sbjct: 709  TFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEG 768

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKT+
Sbjct: 769  KRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTA 828

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E Q + ++K+    
Sbjct: 829  ETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVEFQNMPTVKLSNKV 888

Query: 901  FDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATE----- 954
            F+K F+F+     W N  YM + + DD+  IKE+ D  DA +Q+LE++  +L T+     
Sbjct: 889  FEKRFKFD-----WTNERYMRKVFTDDV--IKEMTDSSDA-IQELESEWDKLVTDRDNLR 940

Query: 955  -IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
             I  +GDS   LP NL+R+IWN QK F ++ R P+D+ PM V+  V  L ER  +V G D
Sbjct: 941  TIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIRGVQGLLERCVIVTGND 1000

Query: 1014 PLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
             +S +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+   PGEM+
Sbjct: 1001 RISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGEIETRFQQAQANPGEMV 1060

Query: 1074 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGV 1133
            G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VFL  G 
Sbjct: 1061 GALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGA 1120

Query: 1134 NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE 1193
                E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD D  P 
Sbjct: 1121 ARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPDFD--PT 1178

Query: 1194 KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDE 1253
            +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNADKL+LRIRIMN+E
Sbjct: 1179 RISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNE 1238

Query: 1254 APKGELNDESA---EDDVFLKKIESNMLTEMALRGV------------------------ 1286
              K +  DE+    EDD+FL+ IE+NML++M L+G+                        
Sbjct: 1239 ENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITDT 1298

Query: 1287 ----------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
                            +++ V+   DVD  RT+SN + EI +VLGIEAVR+++  E+  V
Sbjct: 1299 GEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAV 1358

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            + F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA  
Sbjct: 1359 LQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAH 1418

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYMEG-----LEFG 1443
            AE+D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S M G     +  G
Sbjct: 1419 AETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNSLGSSMLGGTAMFIGGG 1478

Query: 1444 MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSP 1503
             TP+ +P   TP+ +   +P Y FSP   +S +T        GG +FSP+++   S  SP
Sbjct: 1479 STPSMTP-PMTPWVN-CHTPRY-FSPPGHVSAMTP-------GGPSFSPSAASDASGMSP 1528

Query: 1504 GYSPSSP----------------GYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
             +SP+ P                     SP YSPTSP Y+ +SPG +  SP YSP+ P Y
Sbjct: 1529 SWSPAHPGSSPSSPGLSMSPYYQASPSVSPSYSPTSPNYTASSPGGA--SPNYSPARPNY 1586

Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT- 1606
            SPTSP Y+  SP Y+  +P+++  S  YSP+S  YSPTSP YSPTS   S  SPS++ + 
Sbjct: 1587 SPTSPVYAAASPRYA--TPNFNAQSTGYSPSSSGYSPTSPVYSPTSNFQS--SPSFAGSG 1642

Query: 1607 SPAYSPTSP----------------------------------AYSPTSPAYSPTSPSYS 1632
            S  YSP +                                    YSPTSP+YSPTSPSY+
Sbjct: 1643 SNMYSPGNAYSSNSSNYSPNSPSYSPMSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPSYT 1702

Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY----------------SPTSPGYSPT 1676
            P +PSYSPTSP+YS  SP YSP SP+YS T   Y                SP SP Y+P 
Sbjct: 1703 PVTPSYSPTSPNYS-ASPHYSPASPAYSQTGVKYSPTSPTYSPPSPSYDGSPGSPQYTPG 1761

Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSP 1736
            SP YSP SP YSPTSP Y+P S ++SPS  YSP+       S YS TSP YSP  S YSP
Sbjct: 1762 SPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSATSPRYSPNMSIYSP 1815

Query: 1737 TSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
            +S  YSP+SPTY+P++         +YSP+SP YSP+A
Sbjct: 1816 SSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTA 1845


>gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase II complex [Drosophila
            pseudoobscura]
          Length = 1811

 Score = 1839 bits (4764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 988/1849 (53%), Positives = 1265/1849 (68%), Gaps = 185/1849 (10%)

Query: 78   GHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL--KIRNPKNRLK 135
            GHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+ +      P+ RL 
Sbjct: 1    GHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIVVKSKGQPRKRLA 60

Query: 136  KILDACKNKTKCEGGDEIDVPGQDGEEP---LKKNKGGCGAQQPKLTIEGMKMIAEYKAQ 192
             + D CK KT CEGG+++D+  +D ++P    K   GGCG  QP +   G+ + AE+K  
Sbjct: 61   YVYDLCKGKTICEGGEDMDLT-KDNQQPDPNKKPGHGGCGHYQPSIRRTGLDLSAEWK-- 117

Query: 193  RKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIP 252
               N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARPDWMI+ VLP+P
Sbjct: 118  -HPNEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYARPDWMIVTVLPVP 170

Query: 253  PPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT 302
            P  VRP+          DDLTH+L+ II+ N  LR+ E +GA AH+I E  ++LQFH+AT
Sbjct: 171  PLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQENIKMLQFHVAT 230

Query: 303  YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
              DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + ID
Sbjct: 231  LVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 290

Query: 363  QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK 422
            Q+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD+G+R+DLR+  
Sbjct: 291  QVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRDNGERIDLRFHP 347

Query: 423  KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 482
            KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STFR+NLS TSPYN
Sbjct: 348  KSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYN 407

Query: 483  ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 542
            ADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL   RK+TKRD 
Sbjct: 408  ADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDV 467

Query: 543  FIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN- 601
            FI ++  MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  +N+ RT + H D  
Sbjct: 468  FITREQVMNLLMFLPTWDGKMPQPCILKPRPLWTGKQIFSLIIPGNVNMIRTHSTHPDEE 527

Query: 602  DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQ 658
            D G    ++ GDT V +E G+L+ G LCKKTLGTS GSL+H+ + E+G + A +F G+ Q
Sbjct: 528  DDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHICFLELGHEIAGRFYGNIQ 587

Query: 659  WLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTM 718
             ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +  LEP PG T+
Sbjct: 588  TVINNWLLLEGHSIGIGDTIADPQTYNEIQMAIKKAKDDVINVIQKAHNMELEPTPGNTL 647

Query: 719  MESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNV 778
             ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INISQ+ ACVGQQNV
Sbjct: 648  RQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNV 707

Query: 779  EGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 838
            EGKRIP+GF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVK
Sbjct: 708  EGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVK 767

Query: 839  TSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
            T+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    ++ Q + ++K+  
Sbjct: 768  TAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVDFQNMPTVKLSN 827

Query: 899  SEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS 958
              F+K F+F+   E +       E I ++    E     ++E   L  DR  L  +I  +
Sbjct: 828  KAFEKRFKFDWSNERYMRKVFTDEVIKEMTDSSEAIQDLESEWDHLMQDRDHL-RQIFPN 886

Query: 959  GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVE 1018
            GDS   LP NL+R+IWN QK F ++ R P+D+ PM V++ V  L ER  +V G D +S +
Sbjct: 887  GDSKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPMRVIKGVKTLLERCVIVTGADRISKQ 946

Query: 1019 AQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAA 1078
            A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+   PGEM+G +AA
Sbjct: 947  ANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVGALAA 1006

Query: 1079 QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKE 1138
            QS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VFL  G     E
Sbjct: 1007 QSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGGAARDAE 1066

Query: 1139 RAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPW 1198
            +AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD D  P +ISPW
Sbjct: 1067 KAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVNVYYEMPDFD--PTRISPW 1124

Query: 1199 LLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGE 1258
            LLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNADKL+LRIRIMN+E  K +
Sbjct: 1125 LLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQ 1184

Query: 1259 LNDESA---EDDVFLKKIESNMLTEMALRGV----------------------------- 1286
              DE+    EDD+FL+ IE+NML++M L+G+                             
Sbjct: 1185 DEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFKA 1244

Query: 1287 -----------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
                       +++ V+   DVD  RT+SN + EI +VLGIEAVR+++  E+  V+ F G
Sbjct: 1245 IGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYG 1304

Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
             YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA  AE+D 
Sbjct: 1305 LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAETDP 1364

Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYMEG-----LEFGMTPAR 1448
            +RGV+ENI++GQL  +GTG   L L+ E  +  IE+   L S M G     +  G TP+ 
Sbjct: 1365 MRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGSSMLGGTAMFIGGGSTPSM 1424

Query: 1449 SPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPS 1508
            +P   TP+ +   +P Y FSP   +S +T        GG +FSP+++   S  SP +SP+
Sbjct: 1425 TP-PMTPWVN-CNTPRY-FSPPGHVSAMTP-------GGPSFSPSAASDASGMSPSWSPA 1474

Query: 1509 SPGYSPTSPGYSPTS----------------PGYSPTSPGYSPTSPTYSPSSPGYSPTSP 1552
             PG SP+SP  S +                 P Y+ +SPG +  SP YSPSSP YSPTSP
Sbjct: 1475 HPGSSPSSPAPSMSPYYPASPSVSPSYSPTSPNYTASSPGGA--SPNYSPSSPNYSPTSP 1532

Query: 1553 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPAYS 1611
             Y+  SP Y+ T+P+++P S  YSP++  YSPTSP YSPTS    P+SPS++ + S  YS
Sbjct: 1533 LYAAASPRYASTTPNFNPQSTGYSPSASGYSPTSPVYSPTS--NFPSSPSFAGSGSNMYS 1590

Query: 1612 PTSPAYSPTS----------------------------PAYSPTSPSYSPTSPSYSPTSP 1643
            P + AYSP+S                            P YSPTSPSYSPTSP+Y+P +P
Sbjct: 1591 PGN-AYSPSSTNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTSPSYSPTSPNYTPATP 1649

Query: 1644 SYSPTSPSYSPTSPSYSPTSPAYS-----------------------PTSPGYSPTSPSY 1680
            SYSPTSP+YS  SP YSP SPAYS                       P SP Y+P SP Y
Sbjct: 1650 SYSPTSPNYS-ASPHYSPASPAYSQTGAKYSPTSPTYSPPSPSYDGSPGSPQYTPGSPQY 1708

Query: 1681 SPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPS 1740
            SP SP YSPTSP Y+P S ++SPS  YSP+       S YS TSP YSP  S YSP+S  
Sbjct: 1709 SPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSATSPRYSPNMSIYSPSSTK 1762

Query: 1741 YSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPGYSPSS 1787
            YSP+SPTY+P++         +YSP+SP YSP+A   YSP++P YSPSS
Sbjct: 1763 YSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPTSPAYSPSS 1803



 Score = 64.3 bits (155), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 63/101 (62%), Gaps = 13/101 (12%)

Query: 1707 YSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSS----PYNAGGGNP 1761
            Y+ SSP    ASP YSP+SPNYSPTS  Y+  SP Y+ ++P ++P S    P  +G    
Sbjct: 1508 YTASSP--GGASPNYSPSSPNYSPTSPLYAAASPRYASTTPNFNPQSTGYSPSASG---- 1561

Query: 1762 DYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTT 1802
             YSP+SP YSP++ + PS+P ++ S ++ Y+P      S+T
Sbjct: 1562 -YSPTSPVYSPTSNF-PSSPSFAGSGSNMYSPGNAYSPSST 1600


>gi|324499938|gb|ADY39985.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
          Length = 1867

 Score = 1837 bits (4759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1008/1763 (57%), Positives = 1264/1763 (71%), Gaps = 96/1763 (5%)

Query: 10   AEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
            A +  V+ VQFGILSPDEI++MSV +IE  E  E GKPK GGL DPR G +DR+ +C TC
Sbjct: 10   APLRTVKRVQFGILSPDEIKRMSVGEIEFSEIYENGKPKMGGLMDPRQGVVDRRGRCMTC 69

Query: 70   TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK--I 127
              N+A+CPGHF HLELAKP+FHIGF+   L I+R VCF CS++L D+D  + K+ LK  +
Sbjct: 70   AGNLADCPGHFAHLELAKPVFHIGFITKTLKILRCVCFYCSRLLIDKDAPRVKEILKKTV 129

Query: 128  RNPKNRLKKILDACKNKTKCEGGDEID--VPGQDGEEPLKKNKGGCGAQQPKLTIEGMKM 185
             NP+ RL  I D CK+K+ CEGGDE+      +  E   +   GGCG  QP     G+++
Sbjct: 130  GNPRRRLALIYDLCKSKSVCEGGDELQNVGGEEGEEGEKEVKAGGCGRYQPSYRRTGIEI 189

Query: 186  IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
             AE+K  R  N+D +      ERK  LTAER L + K ISD DC ++G++P++ARPDWMI
Sbjct: 190  NAEWK--RHVNEDTQ------ERKIVLTAERALEIFKGISDADCLVIGMDPRFARPDWMI 241

Query: 246  LQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
             QVLP+PP  VRP+          DDLTH+L+ I++ N  LRR E NGA AH+I+E  +L
Sbjct: 242  AQVLPVPPLAVRPAVVTFGSARNQDDLTHKLSDIVKTNNQLRRNEANGAAAHVIAEDVKL 301

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQ+H+AT  DN +PG P ATQ+ GRP+KSI  RLK KEGRIRGNLMGKRVDFSARTVITP
Sbjct: 302  LQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITP 361

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP + ID +GVP +IA N+T+PE VTP+N+++L+ELV  G    PG   AKYIIRD+G R
Sbjct: 362  DPNLPIDTVGVPRTIAQNMTFPEIVTPFNVDKLQELVNRGDSQYPG---AKYIIRDNGAR 418

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
            +DLRY  +++D  L+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+STFR+NL
Sbjct: 419  VDLRYHPRAADLLLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNL 478

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            SVT+PYNADFDGDEMN+H+PQS ET+AE+ E+ MVP+ +++PQ+N+PVMGIVQDTL   R
Sbjct: 479  SVTTPYNADFDGDEMNLHLPQSLETKAEISEIAMVPRQLITPQANKPVMGIVQDTLTAVR 538

Query: 536  KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
             +TKRD FIE    M++LM   ++DGK+PQP ILKP+PLWTGKQVF LIIP  +N+ RT 
Sbjct: 539  MMTKRDVFIELPRMMDLLMQMPNWDGKIPQPAILKPKPLWTGKQVFTLIIPGNVNVLRTH 598

Query: 596  AWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 651
            + H D+ D G    ++ GDT V IE GELL+G +C KT+G S G+L+HV+  E+G + A 
Sbjct: 599  STHPDDEDSGPYKWISPGDTKVIIEHGELLAGIICSKTIGRSAGNLLHVVTLELGWEVAA 658

Query: 652  KFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711
             F  H Q  VN WLL    +IGIGDTIAD  T + I +TI KAK +V  +I++A +  LE
Sbjct: 659  HFYSHIQTTVNAWLLAEGHTIGIGDTIADQATYKDIQETIRKAKYDVVEVIEKAHNDELE 718

Query: 712  PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 771
            P PG T+ ++FEN VN++LN ARD  G SAQ+SLSE NN KAMV AGSKGS INISQ+ A
Sbjct: 719  PTPGNTLRQTFENMVNRILNDARDRTGGSAQRSLSEFNNFKAMVVAGSKGSKINISQVIA 778

Query: 772  CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 831
            CVGQQNVEGKRIPFGF  RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREG
Sbjct: 779  CVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREG 838

Query: 832  LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL 891
            LIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+  ++Q  YGEDG+D +W+E+Q++
Sbjct: 839  LIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSIAQMVQLRYGEDGLDGMWVENQSM 898

Query: 892  DSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL 951
             S+K   + F+K F+ ++ +E        +  I DL+   E     ++E  +LE DR +L
Sbjct: 899  PSMKPTNALFEKEFKLDLSDEKSLRKMYTENVIRDLQGSAEALKEVESEWAQLEEDR-RL 957

Query: 952  ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG 1011
              +I   GD+   LP NL+RLIWNAQK F+V+ R+P+D++P+ V++ V +L ++L +V G
Sbjct: 958  LRKIFPKGDAKIVLPCNLQRLIWNAQKIFRVETRKPTDLNPLHVIDGVRELSKKLVIVSG 1017

Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
            +D +S +AQ NATL  NILLRST  SKR+ ++H+L  EAFEW+IGEIESRF Q++V PGE
Sbjct: 1018 DDRISKQAQYNATLLMNILLRSTLCSKRMAEKHKLNMEAFEWLIGEIESRFKQAIVQPGE 1077

Query: 1072 MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKP 1131
            M+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+KK KTPSL+VFL  
Sbjct: 1078 MVGAIAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLTG 1137

Query: 1132 GVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIA 1191
                  E+AK+V C LE+TTLR VT  T ++YDPDP  T+IEED E+V  +YEMPD D  
Sbjct: 1138 TAAKDAEKAKDVLCKLEHTTLRKVTANTAIYYDPDPKNTVIEEDEEWVNIFYEMPDFD-- 1195

Query: 1192 PEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMN 1251
            P + SPWLLRIEL+R+ M DKKL+M A+A+KI+  F DDL  I+ DDNA+KL+ R+RI N
Sbjct: 1196 PSRASPWLLRIELDRKRMTDKKLTMEAIADKIHHGFGDDLNVIYTDDNAEKLVFRLRITN 1255

Query: 1252 DEAPKG--ELNDESAEDDVFLKKIESNMLTEMALRGVN---------------------- 1287
             +  KG  E   +  EDDVFL+ IESNML+++ L+G+                       
Sbjct: 1256 QDGDKGNEEEQVDKMEDDVFLRCIESNMLSDLTLQGIESITKVYMHKPTTDDKKRVVITP 1315

Query: 1288 ------------------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
                              L  V+  ++VD+ RTTSN + EI EVLGIEAVR+A+  E+  
Sbjct: 1316 DGGFKAIPEWLLETDGTALAKVLSEQNVDSVRTTSNDICEIFEVLGIEAVRKAIEREMNH 1375

Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
            VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR + G +MRCSFEETVDIL++AA 
Sbjct: 1376 VISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAA 1435

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARS 1449
             AE D ++GV+ENIMLGQLA  GTG   L L+ +  K  +E+Q  S + G         +
Sbjct: 1436 HAEQDPVKGVSENIMLGQLARAGTGCFDLVLDADKCKLGMEIQAGSGLLGGGGMYFAGGA 1495

Query: 1450 PVSG-------TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSS 1502
              +        TP+ +   +P Y        SP   +  +P V G + S  S  G+SP  
Sbjct: 1496 SPASSSMSPAQTPW-NAATTPAY----GAAWSPAVGSGMTPGVAGFSPSGHSEGGFSPYG 1550

Query: 1503 PG-YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP----TSPTYSPSSP--GYSPTSPAYS 1555
             G +SP+SPG    S G    S  YSP S   S      SP+YSP+SP   Y  +SPAY 
Sbjct: 1551 GGAWSPASPG---GSLGAMSPSGAYSPASDYGSGLDALKSPSYSPTSPASAYGASSPAYG 1607

Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
              SP YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP+YSPTSP
Sbjct: 1608 VMSPRYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1667

Query: 1616 AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSP 1675
            +YSPTSP+YSP SP YSP+SP YSPTSP+YSPTSP+YSPTSP+YSPTSP YSPTSP YSP
Sbjct: 1668 SYSPTSPSYSPASPGYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYSP 1727

Query: 1676 TSPSYSPTSPTYSPTSPSYNPQS 1698
             SP YSPTSP YSPTSP+Y+P S
Sbjct: 1728 ASPGYSPTSPRYSPTSPTYSPTS 1750


>gi|402218945|gb|EJT99020.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731 SS1]
          Length = 1770

 Score = 1834 bits (4750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 947/1757 (53%), Positives = 1219/1757 (69%), Gaps = 112/1757 (6%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDRKM 64
            YS A V KVR VQFGI+SP+EI+  SV +IEH E  +    +P+ GGL DPR+GTIDR  
Sbjct: 10   YSAAPVHKVREVQFGIMSPEEIKAYSVAKIEHSEVMDESGYRPRVGGLMDPRMGTIDRNY 69

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC     +CPGHFGH+ELA+P++H GF+  V  I+  +C NC K+ AD  D  F+  
Sbjct: 70   KCQTCGEGPGDCPGHFGHIELARPVYHAGFLVKVKKILECICVNCGKLKADIGDDTFRVL 129

Query: 125  LK-IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
            +K   NPK RL+ + + CK K  CE  D  +      +   K + GGCG  QP +  +G+
Sbjct: 130  VKRADNPKRRLQIVWEYCKGKMLCESDDMKEEEEDPEKPQ-KPSHGGCGHIQPLIRKDGL 188

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
            K+   YK +RK +DD E +      K+ LTA     +L++I   D +L+GL+ +YARP+W
Sbjct: 189  KLFLVYK-KRKGDDDDEDVKLAQPEKRLLTAAEAHSILRKIPTSDLRLMGLSERYARPEW 247

Query: 244  MILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            MIL V+P+PPP VRPS         DDLT++LA I++ +  LR+ +  GAPAH++SE  Q
Sbjct: 248  MILSVIPVPPPQVRPSIMSDSLRSEDDLTYKLADILKTSATLRKHDAEGAPAHVVSEIEQ 307

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+ATY DNE+ GQPRA Q+SGRP+K+I SRLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 308  LLQFHVATYMDNEIAGQPRAMQKSGRPVKAIRSRLKGKEGRLRGNLMGKRVDFSARTVIT 367

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP I +D++GVP SIA+ LTYPE VT YN+ERL ELV  GP   PG   A+YIIRD G+
Sbjct: 368  GDPNIALDEVGVPRSIAMTLTYPERVTKYNLERLTELVRNGPVEYPG---ARYIIRDTGE 424

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLRY  K  D  L++G+ VERHL DGD+VLFNRQPSLHKMS+M HR+++MPYSTFRLN
Sbjct: 425  RIDLRY--KRGDVSLQIGWVVERHLRDGDYVLFNRQPSLHKMSMMSHRVRVMPYSTFRLN 482

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+HVPQS ETRAE+ E+  VP+ IVSPQ+N+PVMGIVQDTL G 
Sbjct: 483  LSVTSPYNADFDGDEMNLHVPQSEETRAELKEIAWVPRQIVSPQANKPVMGIVQDTLCGI 542

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
             K+T+RD F++  +  NIL+W  D+DG +P P I+KP+P+W+GKQ+  L+IP+ INL   
Sbjct: 543  YKMTQRDIFLDWPLVQNILLWVPDWDGTIPHPCIIKPKPMWSGKQIIALVIPQGINL--- 599

Query: 595  AAWHADNDKGILTAG----DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
                     G L+ G    D  + IE GE++ G   K  +G+S G LIHV++ E GP+  
Sbjct: 600  -------ANGNLSIGNPINDDALIIENGEIMMGIFNKGIVGSSAGGLIHVVFRERGPEVT 652

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R  +G  Q +VNYWL  N FSIGIGDT+ D  T ++I   I  AK +V+ ++++A    L
Sbjct: 653  RDMIGGIQTVVNYWLFHNGFSIGIGDTVPDKPTEKSIMTNIETAKEDVRKVVEEAVKGLL 712

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            +P PG T+ ESFE  VN +LN  RD++G SAQ+SL   NN+K MVTAGSKGSFINISQM+
Sbjct: 713  KPRPGMTIRESFEASVNGILNQVRDKSGKSAQQSLKRDNNVKTMVTAGSKGSFINISQMS 772

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEG+RIPFGF  RTLPHFTKDD+ PESRGFVENSYLRGLTPQEFFFHAM GRE
Sbjct: 773  AMVGQQNVEGQRIPFGFKHRTLPHFTKDDFSPESRGFVENSYLRGLTPQEFFFHAMAGRE 832

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRLVKAMED+MV YDGT+RNSLGDV+Q+ YGEDGMD+  +E Q 
Sbjct: 833  GLIDTAVKTAETGYIQRRLVKAMEDVMVAYDGTIRNSLGDVLQWTYGEDGMDAAHVEEQK 892

Query: 891  LDSLKMKKSEFDKAFRFEM---DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
            +  L +  + F K+FR ++       ++ N  LQ  I D K   +++   D E Q+L+ D
Sbjct: 893  MSLLTISDAVFQKSFRVDILAGAGAGFSRN-ALQVGIIDPKKEFDVQKRLDEEFQQLQDD 951

Query: 948  RYQLATEIATSG-DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            R  L T I  +G      LPV + R++ NA+  F++D RR SD+ P+ +++ V  L  RL
Sbjct: 952  RRLLRTFIFPNGPPKRLVLPVPISRIVQNAKAAFEIDRRRSSDLDPVYIIDEVKALCTRL 1011

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
            KVVPGE  L++  Q++ATL F I+LR   A +RV++EHRL + AF++++GEIE +FL++ 
Sbjct: 1012 KVVPGEHALAMRMQQDATLLFQIMLREQLAVRRVIEEHRLQKVAFDFIVGEIEQQFLRAR 1071

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
               GEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA  +KTP L 
Sbjct: 1072 AHAGEMCGVLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATHLKTPRLK 1131

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            V+L P V  + E +K V   L + TLR++T++TE++YDP+P  T IEED +FV++++ +P
Sbjct: 1132 VYLDPNVAISPEASKAVLTELAHATLRTITKSTEIYYDPEPSTTRIEEDRDFVEAFFSIP 1191

Query: 1187 DEDIAPEKI---SPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
            DE++  +K+   SPWLLR+EL+R  ++DKKL M+ VA KI++ F  D+  I+++DNA+KL
Sbjct: 1192 DEEVE-QKMNLQSPWLLRLELDRAQILDKKLEMSYVASKISEAFQSDIFVIWSEDNAEKL 1250

Query: 1244 ILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV----------------- 1286
            I+R R++N+++ K E  +   E+DVFL+K+E+ ML  ++LRGV                 
Sbjct: 1251 IIRCRVINNQSDKDESGN--IEEDVFLRKLENTMLNSISLRGVDGISRAFMVQDSKTVLT 1308

Query: 1287 -------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                               NL  V+C E VDA RTT+N L+E  EVLGIEA R  LL EL
Sbjct: 1309 PEGDYRTDKDDWMLETEGINLKKVLCVEGVDATRTTTNSLLEGFEVLGIEAARAVLLTEL 1368

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
            R V+ FDGSYVN+RHLA+LCD MTYRG LM+ITRHGINR D G +MRCSFEETV+IL +A
Sbjct: 1369 REVLEFDGSYVNFRHLALLCDIMTYRGTLMSITRHGINRTDAGALMRCSFEETVEILFEA 1428

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNA-IELQLPSYMEGLEFGMTP 1446
            A   E D  RG+ +NIM GQ+AP+GTG   +YL+ +MLK+  I+  + +    ++ GMTP
Sbjct: 1429 AAMGEKDDCRGIAQNIMFGQVAPLGTGAFDVYLDMDMLKDVPIDEAITAAEFTMDGGMTP 1488

Query: 1447 A--------RSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGY 1498
            A        RSPV    Y  G  +    FSP +       +QFS Y   +  SP  + G 
Sbjct: 1489 AAGSMTPYDRSPV----YEGGFRAEAAAFSPLVMAGADETSQFS-YRATLGQSPLGA-GL 1542

Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYS--PTSP------GYSPTSPTYSPSSPGYSPT 1550
              +SPGY+P+SP YSPTSP + PTSPGY+   TSP      G   TSP Y P       T
Sbjct: 1543 GGASPGYAPTSPAYSPTSP-FVPTSPGYTSGATSPFITSPLGAGATSPFYDPRRTAAMAT 1601

Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS------YSPTSPSYS 1604
            SP YSPTSP+   TSP+Y+PTSP+Y+PTSP++SPTSPS+SPTSP+      YSPTSP YS
Sbjct: 1602 SPTYSPTSPALQMTSPAYTPTSPAYTPTSPNFSPTSPSFSPTSPNPRAATGYSPTSPQYS 1661

Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTS 1663
            PTSP YSPTSP Y+PTSP YSPTSP  SPTSP YSPTSP +   S  +SPTSP+  SPTS
Sbjct: 1662 PTSPQYSPTSPQYTPTSPQYSPTSPHLSPTSPRYSPTSPVHG-ASTQFSPTSPAMMSPTS 1720

Query: 1664 PAYSPTSPGYSPTSPSY 1680
            P+YSP SP YSPTSP+Y
Sbjct: 1721 PSYSPASPAYSPTSPAY 1737



 Score =  194 bits (494), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 136/299 (45%), Positives = 180/299 (60%), Gaps = 30/299 (10%)

Query: 1525 GYSPTSPGYSP--TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1582
            G +P +   +P   SP Y     G+   + A+SP   + +  +  +S     Y  T    
Sbjct: 1485 GMTPAAGSMTPYDRSPVYEG---GFRAEAAAFSPLVMAGADETSQFS-----YRATL-GQ 1535

Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP--TSP-SYSPTSPSYS 1639
            SP        SP Y+PTSP+YSPTSP + PTSP Y  TS A SP  TSP     TSP Y 
Sbjct: 1536 SPLGAGLGGASPGYAPTSPAYSPTSP-FVPTSPGY--TSGATSPFITSPLGAGATSPFYD 1592

Query: 1640 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
            P   +   TSP+YSPTSP+   TSPAY+PTSP Y+PTSP++SPTSP++SPTSP  NP++A
Sbjct: 1593 PRRTAAMATSPTYSPTSPALQMTSPAYTPTSPAYTPTSPNFSPTSPSFSPTSP--NPRAA 1650

Query: 1700 KYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGG 1758
                   YSP+SP+ SP SP YSPTSP Y+PTS  YSPTSP  SP+SP YSP+SP +  G
Sbjct: 1651 T-----GYSPTSPQYSPTSPQYSPTSPQYTPTSPQYSPTSPHLSPTSPRYSPTSPVH--G 1703

Query: 1759 GNPDYSPSSP-QYSPSA-GYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSSR 1815
             +  +SP+SP   SP++  YSP++P YSP+S + Y    +      ++ +NT G  S +
Sbjct: 1704 ASTQFSPTSPAMMSPTSPSYSPASPAYSPTSPA-YEGAASPARGNQQNGQNTSGYASKQ 1761


>gi|397568287|gb|EJK46059.1| hypothetical protein THAOC_35301 [Thalassiosira oceanica]
          Length = 1754

 Score = 1832 bits (4745), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 967/1784 (54%), Positives = 1219/1784 (68%), Gaps = 173/1784 (9%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQ------------IEHGETTERGKPKPG 50
            T F +S A + +++ +QFGI++P+E+RQ SV Q            +   ET   G+P  G
Sbjct: 22   TNFGHSTARLRRIKKLQFGIINPEELRQYSVTQAITVNGRKIPAGVTRYETYMAGQPVYG 81

Query: 51   GLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCS 110
            G++DPRLG I  K             PG+FGH++LA+P++H GF+   L  +R VCF+CS
Sbjct: 82   GVNDPRLGDIHDKSD-----------PGYFGHIDLARPVYHYGFLDVTLKALRCVCFHCS 130

Query: 111  KILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGG 170
            +I  ++ + KFK+A  I+N K RL  + +  + K +C+                      
Sbjct: 131  RITVEDTEFKFKKARGIKNRKRRLNAMHELIRPKKRCDH--------------------- 169

Query: 171  CGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPV-ERKQTLTAERVLGVL------KR 223
            C   QPK T  G+ +  EY       D+ E++P    ++KQ  +A++ + +       KR
Sbjct: 170  CNGFQPKYTKVGLHVEIEYA------DEMERMPGTSGDKKQFFSAQKAVEIFEFTPSSKR 223

Query: 224  ISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRH 272
            + DED + LGL+  +ARP+W  + V+P+PP  VRPS           DDLTHQL  I++ 
Sbjct: 224  MRDEDAKALGLDVTWARPEWTCISVMPVPPLHVRPSVVMGGGAQSSEDDLTHQLVNIVKS 283

Query: 273  NENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAK 332
            N  LR   +NG P  I+ +F Q LQ ++  + +NEL G P+ TQRSGRP+K++  RLK+K
Sbjct: 284  NIALRTAIKNGEPNIIVEQFEQALQHNVCAFMNNELRGMPQVTQRSGRPLKTLTQRLKSK 343

Query: 333  EGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELV 392
            EGRIRGNLMGKRVDFSARTVIT DP + I Q+GVP SIA+NLT P  VTP+NI  L  LV
Sbjct: 344  EGRIRGNLMGKRVDFSARTVITADPNLGIHQVGVPRSIAMNLTVPTRVTPFNIHELSALV 403

Query: 393  EYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPS 452
              GP   PG   AK+IIR DG R+DLRY+K  SD  L  G+ VERHLNDGD VLFNRQPS
Sbjct: 404  ANGPTEHPG---AKHIIRSDGLRIDLRYVKNKSDLLLANGWIVERHLNDGDIVLFNRQPS 460

Query: 453  LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPK 512
            LHKMSIMGH+ K++ +STFRLNLS TSPYNADFDGDEMN+HVPQS   RAE   +M  PK
Sbjct: 461  LHKMSIMGHQAKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQSLPARAEAELMMHSPK 520

Query: 513  CIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPR 572
             IVS QSNRPVMGI+QD+LLG +K+TKRD FI+KD+ MNILMW  D+DG++P P I KP 
Sbjct: 521  VIVSGQSNRPVMGIIQDSLLGVQKMTKRDIFIKKDLLMNILMWVTDWDGRIPPPAIYKPE 580

Query: 573  PLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGT 632
             LWTGKQ+  LI+PK INL R  A +           D  VRI +GEL+ GT+ KKT+G+
Sbjct: 581  ELWTGKQIMTLILPK-INL-RGKANNGGPKPDTFNVYDNQVRIMEGELIEGTIDKKTIGS 638

Query: 633  STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTIS 692
              G +IH  W +VG +   +F+  TQ +VN+W+LQ +FSIG  D IAD  TME I +TI+
Sbjct: 639  GMGGIIHTAWLDVGHEDTTRFMNQTQQVVNHWILQYSFSIGACDAIADVSTMEQIANTIN 698

Query: 693  KAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLK 752
            KAK NV +L+++ Q   LE +PGRTM+ESFE  VN+VLNTARD AG SAQ SLSE+N++K
Sbjct: 699  KAKLNVLDLVRKGQRGELETQPGRTMIESFEQLVNRVLNTARDHAGKSAQSSLSETNSVK 758

Query: 753  AMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSY 812
            AMVTAGSKGSFINISQ+ ACVGQQNVEG RIP+GF  RTLPHF KDD GPESRGFVENSY
Sbjct: 759  AMVTAGSKGSFINISQIIACVGQQNVEGNRIPYGFKRRTLPHFQKDDLGPESRGFVENSY 818

Query: 813  LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 872
            L GLTPQEFFFHAMGGREGLIDTA KT+ETGYIQRRLVKAME +M +YDGT+R S G ++
Sbjct: 819  LFGLTPQEFFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDGTLRTSGGQIV 878

Query: 873  QFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPN-----YMLQEYIDDL 927
            QFLYGEDGMD+VWIE Q+ DSL + K +F++ +     + ++  +     ++  + IDD 
Sbjct: 879  QFLYGEDGMDAVWIEKQSFDSLTLNKVDFEERYLLSSADPDFGYDDQGIPFIQSDTIDDC 938

Query: 928  KTIKELRDVFDAEVQKLEADRYQLATEIAT-----SGDSSWPLPVNLKRLIWNAQKTFKV 982
            +   +++ V D E++ L+ D+  L   +A        D S   P N+KR+I N+ + F++
Sbjct: 939  RHNSQVQQVLDREIEALKDDQRILRVVMANREAGREDDPSSYAPGNIKRVIQNSLRQFQI 998

Query: 983  DPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLK 1042
            D  +PSD+HP +VVE +D L  RL VV G+D LSVEAQKNAT  ++IL+RS  +SKRVLK
Sbjct: 999  DKGQPSDLHPRDVVEKIDALLRRLVVVVGDDVLSVEAQKNATTLYSILIRSYLSSKRVLK 1058

Query: 1043 EHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKN 1102
            E+RL+  A  WVIGEIE+RF  + V+PGEM G +AAQSIGEPATQMTLNTFHYAGVSAKN
Sbjct: 1059 EYRLSEAALNWVIGEIETRFHHAKVSPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKN 1118

Query: 1103 VTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVW 1162
            VTLGVPRL+EIINVAK +KTP L++ LKP V+   + AK V  ++EYT L  VT+ TE++
Sbjct: 1119 VTLGVPRLKEIINVAKTVKTPGLTIHLKPQVSGDADIAKMVHSSIEYTVLGDVTKLTEIY 1178

Query: 1163 YDPDPMGTIIEEDVEFVKSYYEMPD---EDIAPEKISPWLLRIELNREMMVDKKLSMAAV 1219
            YDPDPM TI+E+D EFVK YYEM +   ED++  ++SPW+LRIELN+ +MVDKK+ M  +
Sbjct: 1179 YDPDPMNTIVEQDREFVKDYYEMGEETQEDLS--RLSPWVLRIELNQAVMVDKKIKMNEI 1236

Query: 1220 AEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESA------------EDD 1267
               I  E+  DL  + +DDNAD L+ RIRI+ND  P     DE+             EDD
Sbjct: 1237 TSMIANEYGSDLNVVVSDDNADDLVARIRIVND-MPMAHSIDENGNAMMAEDVELGQEDD 1295

Query: 1268 VFLKKIESNMLTEMALRGV-----------------------------------NLLAVM 1292
            VFLK++E +ML  + LRGV                                   NL++V+
Sbjct: 1296 VFLKRLEKSMLQTLKLRGVEDVKKVFMREEKRVKWDDERGFQRIDEWVLETDGSNLMSVL 1355

Query: 1293 CHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTY 1352
              E VDA RT SN ++E+  VLGIE VR A+L ELR VISFDGSYVNYRHLA L D MT 
Sbjct: 1356 GIEHVDASRTISNDIVEVFTVLGIEGVRAAILSELRNVISFDGSYVNYRHLACLVDVMTM 1415

Query: 1353 RGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIG 1412
             GHLMA+ RHGINR ++GP++RCSFEETVD+L DAA++AE + LRGVTENIM+GQLA +G
Sbjct: 1416 HGHLMAVDRHGINRVESGPLLRCSFEETVDMLNDAALYAEEEVLRGVTENIMMGQLARVG 1475

Query: 1413 TGDCSLYLNDEMLKNAIELQLPSYME-----GLEFGMTPARSPVSGTPYHDGMMSPGYLF 1467
            TGD  L L+++ +       +   +E     GL  G     +P + TP+     SP    
Sbjct: 1476 TGDIDLLLDEQKVVRDAVEVVVDNLEGDKDLGLVGGGIGMPTPYASTPF---AASPS--M 1530

Query: 1468 SPNLRLSPVTDAQ--FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPG--------YSPTSP 1517
            + N+ +SP  DA   FSP VGG  FSP  S G+SPS   YSP+           + P+SP
Sbjct: 1531 NQNVEMSPFVDAAGGFSPAVGG--FSPAVS-GFSPS---YSPAGGSGTSGSYGEFGPSSP 1584

Query: 1518 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1577
             YSPTSP YSPTSP YSPTSP YSP+SP YSPTSPAYSPTSP+YSPTSP+YSPTSP+YSP
Sbjct: 1585 QYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1644

Query: 1578 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP-------- 1629
            TSP+YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSPAYSPTSPAYSPTSP        
Sbjct: 1645 TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPVWLMPISR 1704

Query: 1630 ---SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
               +YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSP S
Sbjct: 1705 QVRAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPLS 1748



 Score =  223 bits (569), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 132/228 (57%), Positives = 160/228 (70%), Gaps = 36/228 (15%)

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA-YSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
            SP+    SP+ S  SPSYSP   + +  S   + P+SP YSPTSP+YSPTSP+YSPTSP+
Sbjct: 1547 SPAVGGFSPAVSGFSPSYSPAGGSGTSGSYGEFGPSSPQYSPTSPAYSPTSPAYSPTSPA 1606

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            YSPTSP+YSPTSP+YSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP            
Sbjct: 1607 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP------------ 1654

Query: 1705 LAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPT-----------YSPSS 1752
             AYSP+SP  SP SP YSPTSP YSPTS +YSPTSP+YSP+SP            YSP+S
Sbjct: 1655 -AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPVWLMPISRQVRAYSPTS 1713

Query: 1753 PYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTPQTNRDD 1799
            P         YSP+SP YSP++  YSP++P YSP+S + Y+P ++ +D
Sbjct: 1714 PA--------YSPTSPAYSPTSPAYSPTSPAYSPTSPA-YSPLSDPED 1752



 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/136 (41%), Positives = 84/136 (61%), Gaps = 4/136 (2%)

Query: 1659 YSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS 1718
            Y+ T  A SP+       SP +   +  +SP    ++P  + +SPS + +  S       
Sbjct: 1519 YASTPFAASPSMNQNVEMSP-FVDAAGGFSPAVGGFSPAVSGFSPSYSPAGGSGTSGSYG 1577

Query: 1719 PYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYS 1777
             + P+SP YSPTS +YSPTSP+YSP+SP YSP+SP  +   +P YSP+SP YSP++  YS
Sbjct: 1578 EFGPSSPQYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS-PTSPAYSPTSPAYSPTSPAYS 1636

Query: 1778 PSAPGYSPSSTSQYTP 1793
            P++P YSP+S + Y+P
Sbjct: 1637 PTSPAYSPTSPA-YSP 1651


>gi|238880428|gb|EEQ44066.1| DNA-directed RNA polymerase II largest subunit [Candida albicans
            WO-1]
          Length = 1742

 Score = 1829 bits (4738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 972/1777 (54%), Positives = 1221/1777 (68%), Gaps = 160/1777 (9%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLG 58
            M  +FPYS A +  V+ VQFG+LSP+E+R +SV +IE+ ET ++   +P+ GGL+DPRLG
Sbjct: 1    MSRQFPYSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLG 60

Query: 59   TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
            +IDR  +C+TC  +MAECPGHFGH+ELAKP+FHIGF+  +     SVC +C K+L DE +
Sbjct: 61   SIDRNFRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETN 120

Query: 119  HKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKL 178
                QA+KIR+PK R   +   CK K  CE  +  D      E   + ++GGCG  QP +
Sbjct: 121  PAMAQAIKIRDPKKRFNAVWSLCKTKMVCETDNNED------EMTDQPSRGGCGHPQPTI 174

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              +G+K+   +K Q K  DD +Q PE    ++ LT   +L V K IS EDC  +G N  Y
Sbjct: 175  RRDGLKLWGTWK-QNKNYDDNDQ-PE----RRLLTPSEILNVFKHISPEDCYKMGFNEDY 228

Query: 239  ARPDWMILQVLPIPPPP----------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARP+WM++ VLP+PPPP           R  DDLT +LA II+ N N++R E +G+P H+
Sbjct: 229  ARPEWMLITVLPVPPPPVRPSIAFNETARGEDDLTFKLADIIKANINVQRLETDGSPQHV 288

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ISEF  LLQFH+ATY DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFS
Sbjct: 289  ISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFS 348

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVI+ DP +++DQ+GVP SIA  LTYPE VTPYNI +L ELV  GP+  PG   AKY+
Sbjct: 349  ARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPG---AKYV 405

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IRD G R+DLRY K++ D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+++MPY
Sbjct: 406  IRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPY 465

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSVTSPYNADFDGDEMN+HVPQS ETR+E+ ++  VP  IVSPQSN+PVMGIVQ
Sbjct: 466  STFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQ 525

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL G RK+T RD FIE D  MN+  W  ++DG +P P ++KP+ LWTGKQ+ +L IPK 
Sbjct: 526  DTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAVVKPKQLWTGKQLLSLAIPKG 585

Query: 589  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            I+L R      D  + +L+  DT + I  GE++ G + KKT+G + G LIH +  E GP 
Sbjct: 586  IHLQR-----FDGGRDLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPK 640

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
               +     Q +VNYWLL N FSIGIGDTIADA+TM  +N TI +AK  V+ +I  AQ  
Sbjct: 641  VCAELFSSIQKVVNYWLLHNGFSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHN 700

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             LEPEPG T+ ESFE+ V++VLN ARD AG SA+ SL + NN+K MVT+GSKGSFINISQ
Sbjct: 701  KLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQ 760

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            M+ACVGQQ VEGKRIPFGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM G
Sbjct: 761  MSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAG 820

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYI RRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E 
Sbjct: 821  REGLIDTAVKTAETGYIPRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEK 880

Query: 889  QTLDSLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
            Q++D++      F++ ++ + +D EN     +L E   +++   +L+ + D E  +L  D
Sbjct: 881  QSVDTIPGSDESFERRYKIDVLDTENVISESLL-ESGKEIRGDVQLQKILDEEYNQLLKD 939

Query: 948  RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1007
            R  L      +GD SWPLPVNL+R+I NAQ+ F     R SD+   E+V  V +L  +L 
Sbjct: 940  RKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEEIVLGVKELCMKLL 999

Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            VV G+ PL  EAQ+NATL F  LLRS  A++RV++E +L R +FEWV+GEIE++F +S+V
Sbjct: 1000 VVRGDTPLVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIV 1059

Query: 1068 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1127
             PGEM+G VAAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTP+++V
Sbjct: 1060 HPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTV 1119

Query: 1128 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1187
            FL P V S  E+AK VQ A+E+TTL++VT +TE++YDPDP  T+IE+D + V++Y+ +PD
Sbjct: 1120 FLDPEVASDIEKAKIVQSAIEHTTLKNVTSSTEIYYDPDPRTTVIEDDYDTVEAYFAIPD 1179

Query: 1188 EDI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            + +  + +K SPWLLR+EL+R  M+DK+L+MA VAEKI+Q F +DL  I++DD ADKLI+
Sbjct: 1180 QKVEESIDKQSPWLLRLELDRAKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLII 1239

Query: 1246 RIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG-------------------- 1285
            R R++ D  PK    D  AE+D  LK+IE++ML  ++LRG                    
Sbjct: 1240 RCRVVRD--PKSLDEDADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVSHPDET 1297

Query: 1286 ---------------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
                           VNL  VM    VD+ RT SN  IE++ VLGIEA R +L  E+  V
Sbjct: 1298 GEFKQGKEWVLETDGVNLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNV 1357

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            I+FDGSYVNYRH+A+L D MT RGHLMAITRHGINR+DTG +MRCSFEETV+ILLDAA  
Sbjct: 1358 IAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAA 1417

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSP 1450
            AE D  +G++EN+MLGQ+AP+GTG   L ++D ML+ A     PS M      M      
Sbjct: 1418 AELDDCKGISENVMLGQMAPLGTGSFDLMVDDRMLQKA-----PSSM-----AMDDIADG 1467

Query: 1451 VSGTPYHD--GMMSPGYLFSPNLRLSPVTDAQFSP-YVGGMAFSPTSSPGYSPSSPGY-S 1506
               TPY D                 SP+  AQ +   +GG+     +S G  P+SP   S
Sbjct: 1468 GGATPYKDYENARDENIDIDAGAGFSPIHIAQMNEGNIGGL-----TSYGGQPTSPAATS 1522

Query: 1507 PSSPGY-SPTSPGYSPTSPGY----------------SPTSPGYSPTSPTYSPSSPGYSP 1549
            P S GY S TSPGY  TSPGY                +PTSP YSPTSP+Y+P+SP YSP
Sbjct: 1523 PFSYGYNSITSPGY--TSPGYGYSPTSPSYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSP 1580

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--------------- 1594
            TSP+Y+PTSP+YSPTSPSY+PTSP+YSPTSP+YSPTSPSYSPTSP               
Sbjct: 1581 TSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPAYSPTSPSYSPTSPQYSPTSPSYSPTSPS 1640

Query: 1595 ----------------------------------SYSPTSPSYSPTSPAYSPTSPAYSPT 1620
                                               YSPTSPSYSPTSP YSPTSP+YSPT
Sbjct: 1641 YSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPT 1700

Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
            SP YSPTSP YSPTSP YSPTSP YSP SP Y P  P
Sbjct: 1701 SPQYSPTSPQYSPTSPQYSPTSPQYSPGSPGYEPEPP 1737



 Score =  174 bits (440), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 118/236 (50%), Positives = 132/236 (55%), Gaps = 79/236 (33%)

Query: 1606 TSPAYSPTSPAY---------SPTSPAYSPTSPSY----------------SPTSPSYSP 1640
            TS    PTSPA          S TSP Y  TSP Y                +PTSP+YSP
Sbjct: 1509 TSYGGQPTSPAATSPFSYGYNSITSPGY--TSPGYGYSPTSPSYSPTSPSYAPTSPAYSP 1566

Query: 1641 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAK 1700
            TSPSY+PTSP+YSPTSPSY+PTSPAYSPTSP Y+PTSP+YSPTSP YSPTSPSY+P S +
Sbjct: 1567 TSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPAYSPTSPSYSPTSPQ 1626

Query: 1701 YSPSLA-------------------------------------------YSPSSPRLSPA 1717
            YSP+                                             YSP+SP  SP 
Sbjct: 1627 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPT 1686

Query: 1718 SP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
            SP YSPTSP+YSPTS  YSPTSP YSP+SP YSP+S        P YSP SP Y P
Sbjct: 1687 SPQYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTS--------PQYSPGSPGYEP 1734



 Score =  165 bits (417), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/235 (50%), Positives = 140/235 (59%), Gaps = 57/235 (24%)

Query: 1599 TSPSYSPTSPAY-SPTSPAY-SPTSPAYSPTSPSYSPTSPSY---------SPTSPSYSP 1647
            TS    PTSPA  SP S  Y S TSP Y  TSP Y  +  S          +PTSP+YSP
Sbjct: 1509 TSYGGQPTSPAATSPFSYGYNSITSPGY--TSPGYGYSPTSPSYSPTSPSYAPTSPAYSP 1566

Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY 1707
            TSPSY+PTSP+YSPTSP+Y+PTSP YSPTSPSY+PTSP YSPTSP+Y+P S    PS  Y
Sbjct: 1567 TSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPAYSPTS----PS--Y 1620

Query: 1708 SPSSPRLSPASPYSPTSP------------------------------------NYSPTS 1731
            SP+SP+ SP SP    +                                      YSPTS
Sbjct: 1621 SPTSPQYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPQYSPTS 1680

Query: 1732 SSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSP 1785
             SYSPTSP YSP+SP+YSP+SP      +P YSP+SPQYSP++  YSP +PGY P
Sbjct: 1681 PSYSPTSPQYSPTSPSYSPTSP-QYSPTSPQYSPTSPQYSPTSPQYSPGSPGYEP 1734


>gi|324120588|dbj|BAJ78685.1| RNA polymerase II largest subunit [Stenopsyche marmorata]
          Length = 1754

 Score = 1828 bits (4735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 966/1780 (54%), Positives = 1229/1780 (69%), Gaps = 136/1780 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGIL+PDEIR+MSV +  I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRQVKRVQFGILAPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + ++R VCF CSK+L    + K K+ +
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKVLRCVCFYCSKLLVTPTNPKIKEVV 125

Query: 126  KIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQDG-EEPLKKNKGGCGAQ---QPKLT 179
                  P+ RL  + D CK K  CEGG+++D+ G DG EE  KK   G G     QP + 
Sbjct: 126  MKSKGQPRKRLAYVYDLCKGKNICEGGEDMDLGGGDGTEEGAKKGAAGHGGCGHYQPSIH 185

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
              G+ + AE+K     N+D +      E+K  ++AERV  +LK I+DE+C +LG++PK+A
Sbjct: 186  RSGLDLTAEWK---HVNEDSQ------EKKIVISAERVWEILKHITDEECFILGMDPKFA 236

Query: 240  RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RPDWMI+ V+P+PP  VRP+          DDLTH+L+ II+ N  L R E+ GA AH+I
Sbjct: 237  RPDWMIITVMPVPPLCVRPAVVMFGAAKNQDDLTHKLSDIIKTNNELIRNEQAGAAAHVI 296

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
             E  ++LQFH+AT+ DN++PG PRA Q+SG+P+K++ +RLK KEGRIRGNLMGKRVDFSA
Sbjct: 297  QENIKMLQFHVATFVDNDMPGMPRAVQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDFSA 356

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R+++LV  G    PG   AKYI+
Sbjct: 357  RTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQKLVRRGNSQYPG---AKYIV 413

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD+G+R+DLR+  K SD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+S
Sbjct: 414  RDNGERIDLRFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWS 473

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQD
Sbjct: 474  TFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQD 533

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK+TKRD FIEK+  MNILM+   + GK+P+P ILKP+PLWTGKQ+F+LIIP  +
Sbjct: 534  TLTAVRKMTKRDVFIEKEQMMNILMFLPTWIGKMPKPCILKPKPLWTGKQIFSLIIPGNV 593

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            N+ RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E+
Sbjct: 594  NMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G D A +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A
Sbjct: 654  GHDTAGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS IN
Sbjct: 714  HNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHA
Sbjct: 774  ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    
Sbjct: 834  MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGET 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E Q L ++K+    F+K F+F+   E +      ++ I +L     +    ++E ++L 
Sbjct: 894  VEFQNLPTIKLSNKAFEKKFKFDPSNERYLRRIFSEQVIKELTESGYVIADLESEWEQLC 953

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L  +I   G+S   LP NL+R+IWN QK F+++ R P+D+ P++V++ V  L ++
Sbjct: 954  KDREAL-RQIFPGGESKVVLPCNLQRMIWNVQKIFRINKRLPTDLSPIKVIQGVRDLLQK 1012

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
              +V G D LS +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+
Sbjct: 1013 CIIVAGNDRLSKQANENATLLFQCLVRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQA 1072

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
               PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL
Sbjct: 1073 QCNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSL 1132

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEM
Sbjct: 1133 TVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEM 1192

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PD D  P KISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+L
Sbjct: 1193 PDFD--PTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVL 1250

Query: 1246 RIRIMNDEAPKGELNDESA----EDDVFLKKIESNMLTEMALRGV--------------- 1286
            RIRIMN +  K + N+E      EDD+FL+ IE+NML++M L+G+               
Sbjct: 1251 RIRIMNSDENKFQDNEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1310

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     +++ V+   DVD  RT SN + EI +VLGIEAVR+
Sbjct: 1311 KKRIVITDSGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1370

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLE 1441
            D+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ +  KN +E+       GL 
Sbjct: 1431 DVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAQKCKNGMEMGGLGVGTGLG 1490

Query: 1442 FGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS-SPGYSP 1500
              M                    +  +P+L      +AQ +P  G MA+SP+      +P
Sbjct: 1491 TSM--------------------FFGTPSLTPHSPWNAQGTPAYGSMAWSPSQYGSSMTP 1530

Query: 1501 SSPGYSPSSPGYSPTSPGYSPT-SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP 1559
              P +SPS  G S  S G SP  S  +SPT PG        SP SPG  P    Y P+SP
Sbjct: 1531 GGPSFSPS--GASDAS-GLSPAYSSAFSPT-PG--------SPGSPG--PAMSPYIPSSP 1576

Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTSPAYS 1618
            + S  SP YSP+SP + PTSPS +P +P+Y+PTSP +  +  S+ SP SP YSPTSP YS
Sbjct: 1577 AGS-ASPRYSPSSPQFVPTSPSLTPATPTYTPTSPMFISSPGSHLSPASPLYSPTSPGYS 1635

Query: 1619 PTSPAYSPTSP-----SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1673
            PTS   S TSP      YSP+S  YSPTSPSYSPTSP +S TS ++   SP YSPTSP Y
Sbjct: 1636 PTSHYQSTTSPLYPASGYSPSS-HYSPTSPSYSPTSPRFSVTS-NFQGASPNYSPTSPAY 1693

Query: 1674 SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
            SPTSP+Y  +SP YSPTSPS          S AYSP+SPR
Sbjct: 1694 SPTSPAYVSSSPNYSPTSPS----------SPAYSPNSPR 1723



 Score =  157 bits (396), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 120/244 (49%), Positives = 149/244 (61%), Gaps = 28/244 (11%)

Query: 1537 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPS 1595
            +P+ +P SP  +  +PAY   + S S    S +P  PS+SP+  S  S  SP+YS    +
Sbjct: 1497 TPSLTPHSPWNAQGTPAYGSMAWSPSQYGSSMTPGGPSFSPSGASDASGLSPAYSS---A 1553

Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--- 1652
            +SPT  S     PA SP    Y P+SPA S  SP YSP+SP + PTSPS +P +P+Y   
Sbjct: 1554 FSPTPGSPGSPGPAMSP----YIPSSPAGS-ASPRYSPSSPQFVPTSPSLTPATPTYTPT 1608

Query: 1653 ------SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP-SL 1705
                  SP S   SP SP YSPTSPGYSPTS   S TSP Y P S  Y+P S+ YSP S 
Sbjct: 1609 SPMFISSPGS-HLSPASPLYSPTSPGYSPTSHYQSTTSPLY-PAS-GYSP-SSHYSPTSP 1664

Query: 1706 AYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSP 1765
            +YSP+SPR S  S +   SPNYSPTS +YSPTSP+Y  SSP YSP+SP      +P YSP
Sbjct: 1665 SYSPTSPRFSVTSNFQGASPNYSPTSPAYSPTSPAYVSSSPNYSPTSP-----SSPAYSP 1719

Query: 1766 SSPQ 1769
            +SP+
Sbjct: 1720 NSPR 1723



 Score =  114 bits (285), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 97/211 (45%), Positives = 124/211 (58%), Gaps = 26/211 (12%)

Query: 1593 SPSYSPTSPSYSPTSPAYSPTSPAYSPT--SPAYSPTSPSYSPTSPS-YSPTSPSYSPTS 1649
            +PS +P SP  +  +PAY   S A+SP+    + +P  PS+SP+  S  S  SP+YS   
Sbjct: 1497 TPSLTPHSPWNAQGTPAYG--SMAWSPSQYGSSMTPGGPSFSPSGASDASGLSPAYSS-- 1552

Query: 1650 PSYSPTSPSYSPTSPA---YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA 1706
             ++SPT  S     PA   Y P+SP  S  SP YSP+SP + PTSPS  P +  Y+P+  
Sbjct: 1553 -AFSPTPGSPGSPGPAMSPYIPSSPAGS-ASPRYSPSSPQFVPTSPSLTPATPTYTPTSP 1610

Query: 1707 YSPSSP--RLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDY 1763
               SSP   LSPASP YSPTSP YSPTS   S TSP Y  S   YSPSS Y+    +P Y
Sbjct: 1611 MFISSPGSHLSPASPLYSPTSPGYSPTSHYQSTTSPLYPASG--YSPSSHYSPT--SPSY 1666

Query: 1764 SPSSPQYS-------PSAGYSPSAPGYSPSS 1787
            SP+SP++S        S  YSP++P YSP+S
Sbjct: 1667 SPTSPRFSVTSNFQGASPNYSPTSPAYSPTS 1697



 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 90/231 (38%), Positives = 112/231 (48%), Gaps = 79/231 (34%)

Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS--PTSPSYSPT--------SPTYS--- 1688
            +PS +P SP  +  +P+Y   S A+SP+  G S  P  PS+SP+        SP YS   
Sbjct: 1497 TPSLTPHSPWNAQGTPAYG--SMAWSPSQYGSSMTPGGPSFSPSGASDASGLSPAYSSAF 1554

Query: 1689 ---PTSPS--------YNPQSAKYSPSLAYSPSSPR------------------------ 1713
               P SP         Y P S   S S  YSPSSP+                        
Sbjct: 1555 SPTPGSPGSPGPAMSPYIPSSPAGSASPRYSPSSPQFVPTSPSLTPATPTYTPTSPMFIS 1614

Query: 1714 -----LSPASP-YSPTSPNYSPT------------------SSSYSPTSPSYSPSSPTYS 1749
                 LSPASP YSPTSP YSPT                  SS YSPTSPSYSP+SP +S
Sbjct: 1615 SPGSHLSPASPLYSPTSPGYSPTSHYQSTTSPLYPASGYSPSSHYSPTSPSYSPTSPRFS 1674

Query: 1750 PSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQ--YTPQTNR 1797
             +S  N  G +P+YSP+SP YSP++  Y  S+P YSP+S S   Y+P + R
Sbjct: 1675 VTS--NFQGASPNYSPTSPAYSPTSPAYVSSSPNYSPTSPSSPAYSPNSPR 1723


>gi|388580196|gb|EIM20513.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Wallemia sebi CBS 633.66]
          Length = 1752

 Score = 1828 bits (4734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 953/1754 (54%), Positives = 1203/1754 (68%), Gaps = 120/1754 (6%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLGTID 61
            +F +S A V  ++ VQFG++SP+E++ +SV QI H E  +   G+P+ GGL DPR+GTID
Sbjct: 6    QFSHSAAPVKGIKEVQFGLMSPEEMKSLSVAQIIHPEVIDESTGRPRQGGLMDPRMGTID 65

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R  KC+TC   MAECPGHFGH+ELA+P FHIGF+  +  I+ S+C NC ++LADE+D + 
Sbjct: 66   RNFKCQTCGEGMAECPGHFGHIELARPAFHIGFLTKIKKIIESICVNCGRLLADENDPEL 125

Query: 122  KQALK-IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEE--PLKKNKGGCGAQQPKL 178
             + ++ +   K R + +   C   + C+     D P ++GE+  P +   GGCG  QP +
Sbjct: 126  AKIVRTVPVGKRRFEAVHAYCTKISICKP----DEPNENGEDAPPSQPGHGGCGRLQPAI 181

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              E +K+ +  K Q+    D+E   +  + K+ L+A  V  + K+I D D  L+GL+ ++
Sbjct: 182  RREALKLFSVNKQQKH---DEEDDTKAQQDKRQLSAAEVYTLFKKIPDSDITLMGLSAEF 238

Query: 239  ARPDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
            ARPDWMI+ V           + +     R  DDLT++LA I+++   LRR E  GAPAH
Sbjct: 239  ARPDWMIITVLPVPPPPVRPSIAVDGGATRSEDDLTYKLADILKYTATLRRFESEGAPAH 298

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            IISE  QL+QFH+ATY DN++ G P+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDF
Sbjct: 299  IISENEQLVQFHVATYMDNDIAGIPQAMQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 358

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVIT DP + +D++GVP+SIA  LTYPE VTPYNI  L+ELV  GP+  PG   A+Y
Sbjct: 359  SARTVITGDPNLELDEVGVPFSIARTLTYPERVTPYNILYLQELVRNGPNEYPG---ARY 415

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            ++RD G+R+DLRY +++ D  L+ G+ VERHL DGDFVLFNRQPSLHKMS+M HR+K+MP
Sbjct: 416  VVRDTGERIDLRYNRRA-DTFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMCHRVKLMP 474

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            YSTFRLNLSVT PYNADFDGDEMN+HVPQS ETRAE+ ++  V + IVSPQ+N PVMGIV
Sbjct: 475  YSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAEMSQIASVTRQIVSPQANSPVMGIV 534

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QD L G RK+T RDTF++     NILMW   +DG VP P I+KP+PLWTGKQ+ +L IP+
Sbjct: 535  QDALCGVRKLTLRDTFLDSKQVANILMWVPGWDGIVPTPAIMKPKPLWTGKQILSLCIPR 594

Query: 588  QINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             IN+FR+     +  K      D  V IE G ++ G + K T+G S G L+HVI+ E G 
Sbjct: 595  GINVFRS-----NEQKSSAPVDDAGVCIEDGNIMYGAIDKSTVGKSQGGLVHVIFREKGH 649

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
               + FL   Q +VNYW+L + FSIGIGDTIAD  TM  I + I  AK+ VK +I+ A+ 
Sbjct: 650  IICKDFLSGLQVVVNYWMLHHGFSIGIGDTIADKSTMAYITERIGDAKDKVKGIIQSAES 709

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LE + G T+ ESFE  VN  LN ARD+ G SAQ SL + NN+K MV AGSKGSFINIS
Sbjct: 710  NQLEAQAGMTIRESFEASVNMELNQARDQVGKSAQHSLKDDNNVKQMVVAGSKGSFINIS 769

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            QM+ACVGQQ+VEGKRIPFGF  RTLPHFTKDD+GPESRGFVENSYLRGLTP EFFFHAM 
Sbjct: 770  QMSACVGQQSVEGKRIPFGFKYRTLPHFTKDDFGPESRGFVENSYLRGLTPSEFFFHAMA 829

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGY+QRRLVKA+EDIMV YDGTVRNSLGD++QF YGEDGMD   +E
Sbjct: 830  GREGLIDTAVKTAETGYVQRRLVKALEDIMVHYDGTVRNSLGDILQFAYGEDGMDGSAME 889

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
             Q    +     EFD+ FR ++ +    + P  +       L++ + L+D  DAE ++L 
Sbjct: 890  KQHFIGMSASDEEFDRKFRIDLTDPVRGFKPGTLRV----GLESAEGLQDKLDAEWKQLV 945

Query: 946  ADRYQLATEIATS--GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
             DR  L   I     GDS+ PLP+N++R I NAQ+ F++D R+PSD+ P  +V+ V  L 
Sbjct: 946  DDRVLLREFIFKFRPGDSTLPLPLNIRRTIQNAQQIFRIDRRQPSDIDPASIVDEVHALC 1005

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
             RL V+ G D LS EAQ+NATL FNILLRS+   + +++EH L REAF+WVIGEIE+RF 
Sbjct: 1006 RRLVVIRGSDVLSQEAQENATLLFNILLRSSLTVRSIIEEHHLNREAFDWVIGEIETRFN 1065

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            QS+VAPGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA  IKTP
Sbjct: 1066 QSIVAPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTP 1125

Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
            SL+V+L    +      KNVQ  LE+TTL+++T ATE+ YDPDP  TI++ED +FV++Y+
Sbjct: 1126 SLTVYLDEETSRDIVAVKNVQAELEHTTLKTITAATEIIYDPDPTTTIVDEDRDFVEAYF 1185

Query: 1184 EMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
             +PDE++A    K SPWLLR+EL+R  M+DK+L M  VA KI   F +DL  I+++D+A+
Sbjct: 1186 AIPDEEVAANINKQSPWLLRLELDRAKMLDKRLEMNFVAGKIASLFQNDLFVIYSEDSAE 1245

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG---------------- 1285
            KLI+R RI+ D+    E  D+   +DVFLKKIE+NML+ ++LRG                
Sbjct: 1246 KLIIRARIVGDDPTTKE--DDGVSEDVFLKKIENNMLSNISLRGIEGITRVFIVERKKEV 1303

Query: 1286 -------------------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDE 1326
                               VNL  V+  + VD  RT SNH  EI EVLGIEA R A+L E
Sbjct: 1304 IAEGGRFERQQEWVLETDGVNLSEVLPVKHVDGTRTYSNHCQEIFEVLGIEAARNAILKE 1363

Query: 1327 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1386
            LR VI FDGSYVNYRHLA+LCD MT RG LMAITRHGINR DTG +MRCSFEETV+ILL+
Sbjct: 1364 LRNVIEFDGSYVNYRHLALLCDLMTNRGRLMAITRHGINRADTGALMRCSFEETVEILLE 1423

Query: 1387 AAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI-ELQLPSYMEGLEFGMT 1445
            AA   E D   G+ EN++LGQ+AP+GTG   + L+ +MLK+ + + +LP++   L   M 
Sbjct: 1424 AAAIGEKDDCHGIAENVLLGQMAPMGTGAFDVTLDIDMLKDVVVDPKLPAHR--LNAQMA 1481

Query: 1446 PARSPVSGTPYHDGMMSPGYLFSPNLRLSPVT---DAQFSPYVGGMAFSPTSSPGYSPSS 1502
                 V       G M+P Y +  N   + +     AQFSP    +A S      +    
Sbjct: 1482 EGAMVVD----EQGKMTP-YSYGKNSYEAQIVGDDQAQFSP----IAQSGDDGSNFEYMG 1532

Query: 1503 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP-TSPTY----------SPSSPGYSPTS 1551
             G +P   G   TSPGYSP+SP +SPTSPGY P TSP            S +SPGYSP+S
Sbjct: 1533 YGQTPLVTG-GATSPGYSPSSPTWSPTSPGYVPATSPAIGGAVSPWVPQSAASPGYSPSS 1591

Query: 1552 PAYS--------------PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
            P                 P+SP+YSP SPSYSPTSP YSP SP+YSP+SP YSPTSP YS
Sbjct: 1592 PMVGISSPSYSPSSPRFSPSSPTYSPASPSYSPTSPRYSPASPAYSPSSPKYSPTSPKYS 1651

Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
            PTSP YSPTSP YSP SPAYSPTSP YSP SP+YSP SP+YSP SP+YSP SP+YSP SP
Sbjct: 1652 PTSPQYSPTSPRYSPASPAYSPTSPTYSPASPAYSPASPAYSPASPAYSPASPAYSPASP 1711

Query: 1658 SYSPTSPAYSPTSP 1671
            +YSP SPAYSPTSP
Sbjct: 1712 AYSPASPAYSPTSP 1725



 Score =  202 bits (513), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/221 (54%), Positives = 138/221 (62%), Gaps = 40/221 (18%)

Query: 1578 TSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP------- 1629
            TSP YSP+SP++SPTSP Y P TSP+       + P S A    SP YSP+SP       
Sbjct: 1544 TSPGYSPSSPTWSPTSPGYVPATSPAIGGAVSPWVPQSAA----SPGYSPSSPMVGISSP 1599

Query: 1630 --------------SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSP 1675
                          +YSP SPSYSPTSP YSP SP+YSP+SP YSPTSP YSPTSP YSP
Sbjct: 1600 SYSPSSPRFSPSSPTYSPASPSYSPTSPRYSPASPAYSPSSPKYSPTSPKYSPTSPQYSP 1659

Query: 1676 TSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSY 1734
            TSP YSP SP YSPTSP+Y             SP+SP  SPASP YSP SP YSP S +Y
Sbjct: 1660 TSPRYSPASPAYSPTSPTY-------------SPASPAYSPASPAYSPASPAYSPASPAY 1706

Query: 1735 SPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAG 1775
            SP SP+YSP+SP YSP+SP  A G N +  PS    + S+G
Sbjct: 1707 SPASPAYSPASPAYSPTSPSGANGVNGEQKPSWQTGNTSSG 1747



 Score =  155 bits (393), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/193 (51%), Positives = 121/193 (62%), Gaps = 43/193 (22%)

Query: 1627 TSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP------- 1678
            TSP YSP+SP++SPTSP Y P TSP+       + P S A    SPGYSP+SP       
Sbjct: 1544 TSPGYSPSSPTWSPTSPGYVPATSPAIGGAVSPWVPQSAA----SPGYSPSSPMVGISSP 1599

Query: 1679 --------------SYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPT 1723
                          +YSP SP+YSPTSP Y+P S       AYSPSSP+ SP SP YSPT
Sbjct: 1600 SYSPSSPRFSPSSPTYSPASPSYSPTSPRYSPASP------AYSPSSPKYSPTSPKYSPT 1653

Query: 1724 SPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPG 1782
            SP YSPTS  YSP SP+YSP+SPTYSP+SP         YSP+SP YSP++  YSP++P 
Sbjct: 1654 SPQYSPTSPRYSPASPAYSPTSPTYSPASPA--------YSPASPAYSPASPAYSPASPA 1705

Query: 1783 YSPSSTSQYTPQT 1795
            YSP+S + Y+P +
Sbjct: 1706 YSPASPA-YSPAS 1717



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 63/112 (56%), Gaps = 22/112 (19%)

Query: 1702 SPSLAYSPSSPRLSPASP-YSPTSPNYSPTSS-----SYSPTSPSYSPSSPTYSPSSPY- 1754
            +P +    +SP  SP+SP +SPTSP Y P +S     + SP  P  S +SP YSPSSP  
Sbjct: 1536 TPLVTGGATSPGYSPSSPTWSPTSPGYVPATSPAIGGAVSPWVPQ-SAASPGYSPSSPMV 1594

Query: 1755 ------------NAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTP 1793
                             +P YSP+SP YSP++  YSP++P YSPSS  +Y+P
Sbjct: 1595 GISSPSYSPSSPRFSPSSPTYSPASPSYSPTSPRYSPASPAYSPSS-PKYSP 1645


>gi|393247601|gb|EJD55108.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Auricularia delicata TFB-10046 SS5]
          Length = 1775

 Score = 1823 bits (4721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 951/1765 (53%), Positives = 1218/1765 (69%), Gaps = 119/1765 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDR 62
            F +S A V +V+ VQFGILSP+EI+  SV +IE  E  +    +PK GGL DPR+GTIDR
Sbjct: 6    FAFSAAPVRQVKEVQFGILSPEEIKAYSVAKIEFPEVMDETGQRPKQGGLMDPRMGTIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
              KC+TC   MAECPGHFGH+ELA+P+FH+GF+  V  I+  +C NC K+ AD  D  F 
Sbjct: 66   NFKCQTCGEGMAECPGHFGHIELARPVFHVGFLVKVKKILECICVNCGKLKADTSDPNFA 125

Query: 123  QALK-IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEE--PLKKNKGGCGAQQPKLT 179
              ++ +R+PK R+  + + CK+K  CE  +  D   +   E   +KK  GGCG  QP + 
Sbjct: 126  DKVRHVRDPKQRMAIVWNHCKSKMVCETDEPKDEDQEANAELAEIKKGHGGCGHVQPLIR 185

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
             EG+K+   YK  + K++D+ Q     +++  + AE V   LK+I D D  LLGL+  YA
Sbjct: 186  KEGLKLFLVYK--KSKDEDEMQ-----DKRMFMPAE-VHNTLKKIPDSDLALLGLSEAYA 237

Query: 240  RPDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            RPDWMIL V           + +    +R  DDLT++L  I++ +  +RR E+ GAPAH+
Sbjct: 238  RPDWMILTVLPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDILKASMAVRRCEQEGAPAHV 297

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            I++  QLLQFH+ATY DN++ G P+A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFS
Sbjct: 298  ITDHEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFS 357

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVIT DP + +DQ+GVP SIA+ LTYPE VTPYNIE L+ LV  GP   PG   A+Y+
Sbjct: 358  ARTVITGDPNLELDQVGVPRSIAMTLTYPERVTPYNIEYLQTLVRNGPREYPG---ARYV 414

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            +RD G+R+DLRY KK+ D  L+ G+ VERHL DGD+VLFNRQPSLHKMS+M HR+KIMPY
Sbjct: 415  VRDTGERIDLRYNKKA-DAFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKIMPY 473

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSVT PYNADFDGDEMNMH+PQS ETRAE+ ++  VP+ I+SPQ+N+PVMGIVQ
Sbjct: 474  STFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQ 533

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL G RK+T RDTF++     NIL+W  D+DG +P P ILKP+PLWTGKQ+ +L IP+ 
Sbjct: 534  DTLCGIRKLTLRDTFLDWHAVQNILLWVPDWDGTIPTPAILKPKPLWTGKQILSLAIPRG 593

Query: 589  INLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            IN+ R++   + N   D G+L        IE G++L G + KKT+G + G LIHV++ E 
Sbjct: 594  INIARSSDPPSSNPLTDDGML--------IENGDILYGVVDKKTVGAAQGGLIHVVFREK 645

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP+  R      Q +VNYWL  N FSIGIGDTIAD  TM  + + I KA+ NV+ L   A
Sbjct: 646  GPEVCRGLFTGLQTVVNYWLFHNGFSIGIGDTIADKGTMAYVKERIGKARANVQQLQDDA 705

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                L+ +PG T+ E+FE +V + LN ARD+ G SAQKSL + NN+K MVTAGSKGSFIN
Sbjct: 706  HMARLKAKPGMTIRETFEREVERELNQARDDTGQSAQKSLKDDNNVKQMVTAGSKGSFIN 765

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQM+  VGQQ+VEGKRIPFGF  RTLPHFTKDD+ PE+RGFVENSYLRGLTPQEFFFHA
Sbjct: 766  ISQMSVFVGQQSVEGKRIPFGFKHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFFFHA 825

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+ V YDGTVRNSLGD+IQF+YGEDGMD  +
Sbjct: 826  MAGREGLIDTAVKTAETGYIQRRLVKALEDVTVCYDGTVRNSLGDLIQFIYGEDGMDGAF 885

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNY-MLQEYIDDLKTIKELRDVFDAEVQKL 944
            IE QT++S  +    F+  +R ++ +      + +L   +DD  +  EL+   D E  +L
Sbjct: 886  IERQTIESFHIDNKRFEVKYRVDVTDPMLGFRHGVLAVGLDD--SSPELQLKLDEEFDQL 943

Query: 945  EADRYQLATEIATSGD--SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
             ADRY L  +I  + D  +S  LPVNL+R+I NAQ+ F +D R+PSD+ P  ++++V  L
Sbjct: 944  RADRYALRNDIFRNADPRNSHYLPVNLRRIIQNAQQIFHIDRRKPSDLEPAYIIDSVRAL 1003

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
             +RL +V G+DP+S+EAQ+NATL F I LRSTFA++ VL+E+ L REAFEWV+GE+E++F
Sbjct: 1004 IDRLLIVRGDDPISIEAQENATLLFRIHLRSTFATRPVLEEYHLNREAFEWVLGEVETKF 1063

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
            +QS+  PGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA  IKT
Sbjct: 1064 MQSVANPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAANIKT 1123

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS +V+L P V +   RAK VQ  L YTTLR+VT A E++YDPDP  TII+ED +FV+++
Sbjct: 1124 PSHTVYLTPEVAADPNRAKTVQTDLAYTTLRTVTSAVEIFYDPDPTATIIDEDRDFVEAF 1183

Query: 1183 YEMPDEDIAPEK--ISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
            + +PDED+  +    SPWLLR+EL+R  M+D+KL M+ VA +I + F  DL  I++DDN+
Sbjct: 1184 FAIPDEDVESKLHLQSPWLLRLELDRAKMLDRKLDMSYVASRIAENFMTDLFVIWSDDNS 1243

Query: 1241 DKLILRIRIMNDEAPKGELN-DESA---EDDVFLKKIESNMLTEMALRGV---------- 1286
            DKL++R R++      G L+ DE +   E+DVF +++E+ ML  ++LRGV          
Sbjct: 1244 DKLVIRCRVV------GSLDKDEDSRMDEEDVFYRQLENTMLNSVSLRGVEGISRVFLMK 1297

Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                       NL  +M  E VD  +T SN   E+ +VLG+EA 
Sbjct: 1298 QDKIVTRPDGKIENLKDSEWVLETTGVNLKTIMTVEGVDYSKTHSNSCTEVFKVLGVEAA 1357

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R +LL ELR VI FDGSYVNYRHLA+LCD MT RG +MAITRHGINR DTG +MRCSFEE
Sbjct: 1358 RASLLKELRSVIEFDGSYVNYRHLALLCDLMTCRGSIMAITRHGINRADTGALMRCSFEE 1417

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI---ELQLPSY 1436
            TV+IL+DAA   E D   G+ EN++ GQ+AP+GTG   + L+ EMLK+ +    + +P +
Sbjct: 1418 TVEILMDAAAIGEKDDCHGIAENVLFGQMAPMGTGAFDVMLDMEMLKDVVVDSRVPMPDF 1477

Query: 1437 MEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
               +E GMTP  +    TPY DG              SP+ D   +      +FSP +  
Sbjct: 1478 GRLIEGGMTPGGAGAL-TPY-DGS-------------SPMWDNGGAGLRDVASFSPLAMN 1522

Query: 1497 GYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT-YSPSSPGYSPTSPAYS 1555
                   G+ P+  G+     G         P    YSP+SP  +  +SP  S  SP   
Sbjct: 1523 SGEDGGGGFVPTF-GFQSPMGGSGMGMSPGHP----YSPSSPNQFGAASPFVSARSPYSG 1577

Query: 1556 PTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
              SP Y  TSP +   TSP+YSPTSP++  TSPS++PTSP+YSPTSP YSPTSP+YSPTS
Sbjct: 1578 GASPFYPATSPYHLGGTSPTYSPTSPAFGLTSPSFTPTSPNYSPTSPHYSPTSPSYSPTS 1637

Query: 1615 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 1674
            P YSPTSP YSPTSP YSPTSP YSPTSP YSP SP+YSPTSP YSPTSP++SPTSP YS
Sbjct: 1638 PHYSPTSPRYSPTSPRYSPTSPRYSPTSPRYSPQSPNYSPTSPRYSPTSPSFSPTSPRYS 1697

Query: 1675 PTSPSY-SPTSPTYSPTSPSYNPQS 1698
            PTSPS+ SPTSP YSPTSP Y+P S
Sbjct: 1698 PTSPSHISPTSPKYSPTSPKYSPTS 1722



 Score =  192 bits (489), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 109/182 (59%), Positives = 129/182 (70%), Gaps = 16/182 (8%)

Query: 1596 YSPTSPS-YSPTSPAYSPTSPAYSPTSPAYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYS 1653
            YSP+SP+ +   SP  S  SP     SP Y  TSP +   TSP+YSPTSP++  TSPS++
Sbjct: 1554 YSPSSPNQFGAASPFVSARSPYSGGASPFYPATSPYHLGGTSPTYSPTSPAFGLTSPSFT 1613

Query: 1654 PTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
            PTSP+YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP Y             SP+SPR
Sbjct: 1614 PTSPNYSPTSPHYSPTSPSYSPTSPHYSPTSPRYSPTSPRY-------------SPTSPR 1660

Query: 1714 LSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
             SP SP YSP SPNYSPTS  YSPTSPS+SP+SP YSP+SP +    +P YSP+SP+YSP
Sbjct: 1661 YSPTSPRYSPQSPNYSPTSPRYSPTSPSFSPTSPRYSPTSPSHISPTSPKYSPTSPKYSP 1720

Query: 1773 SA 1774
            ++
Sbjct: 1721 TS 1722


>gi|299755292|ref|XP_001828577.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
 gi|298411158|gb|EAU93247.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
          Length = 1745

 Score = 1822 bits (4720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 959/1779 (53%), Positives = 1221/1779 (68%), Gaps = 119/1779 (6%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLGTID 61
            +F +S A V KV+ VQFGILSP+EI+ +SVV+IE+ E  +    KPK  GL DPR+GTID
Sbjct: 5    QFAFSAAPVRKVKEVQFGILSPEEIKAVSVVKIEYPEVMDETTHKPKLQGLMDPRMGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R  KC+TC   MAECPGHFGH+ELA+P+FH GF   V  I+  +C NC K+ AD  D  F
Sbjct: 65   RNFKCQTCGEGMAECPGHFGHIELARPVFHPGFFNKVKKILECICVNCGKLKADITDPAF 124

Query: 122  KQALK-IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQ--DGEEPLKKNKGGCGAQQPKL 178
             + ++ IRNPK R+  + D CK KT CE  DE    G   DG+EP KK  GGCG QQP++
Sbjct: 125  AEKIRHIRNPKQRMAVVWDHCKTKTICEA-DEPREEGAEGDGDEP-KKGHGGCGHQQPQI 182

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              EG+KM  +YK   K  DD +++      K+ +T   +L V K+ISD D  LLGL+ +Y
Sbjct: 183  RKEGLKMFVQYK---KSKDDDDEMKSLQPDKRLITPSEILTVFKKISDHDLHLLGLSDEY 239

Query: 239  ARPDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
            ARP+WMIL V           + +    +R  DDLT++L  II+ + N++R E  G PAH
Sbjct: 240  ARPEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDIIKASSNVKRCEEEGVPAH 299

Query: 288  IISEFAQLLQ---FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKR 344
            IISEF QLLQ   FH+ATY DN+  G P+A Q+SGRP+K+I +RLK KEGR+RGNLMGKR
Sbjct: 300  IISEFEQLLQASIFHVATYMDNDFAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKR 359

Query: 345  VDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTG 404
            VDFSARTVIT DP + +D++GVP SIA+NLTYPE VTPYNI  L+ELV  GP   PG   
Sbjct: 360  VDFSARTVITGDPNLELDEVGVPKSIAMNLTYPERVTPYNIAYLQELVRNGPTTYPG--- 416

Query: 405  AKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIK 464
            A+Y++RD G+R+DLRY  K +D  L+LG+ VERHL DGD+VLFNRQPSLHKMS+M HR++
Sbjct: 417  ARYVVRDTGERIDLRY-NKRADAFLQLGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVR 475

Query: 465  IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 524
            +MPYSTFRLNLSVT PYNADFDGDEMNMHVPQS ETRAE+ ++  VP+ IVSPQ+N+PVM
Sbjct: 476  LMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIVSPQANKPVM 535

Query: 525  GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLI 584
            GIVQDTL G RK T RDTF++ +   NIL+W  ++DG VP P ILKP+PLWTGKQ+ +L 
Sbjct: 536  GIVQDTLCGIRKFTLRDTFLDWNHVQNILLWVPEWDGVVPTPAILKPKPLWTGKQILSLT 595

Query: 585  IPKQINLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            IP+ IN+ R +   + N   D G+L        IE GE + G + KK +G S G L+HV+
Sbjct: 596  IPRGINIQRASENKSSNPVFDDGML--------IENGEFIYGIVDKKIVGASAGGLVHVV 647

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E GP+A ++     Q +VN+WL  N FSIGIGDTIADA+TME I   I+++K  V  +
Sbjct: 648  FREKGPEATKQLFTGLQMIVNFWLFHNGFSIGIGDTIADARTMEFITKNIAESKAKVAQV 707

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
            I+ A    L+ +PG T+ ESFE++V  +LN ARD +G  AQK L E NN+K MV AGSKG
Sbjct: 708  IEDANMDRLKTKPGMTLRESFESEVEGILNKARDSSGQYAQKHLKEDNNVKQMVVAGSKG 767

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            SFINISQM+ CVGQQ+VEG+RIPFGF  RTLPHFTKDD+ PE+RGFVENSYLRGLTPQEF
Sbjct: 768  SFINISQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEF 827

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+MV YDGTVRNSLGD+IQF+YGEDGM
Sbjct: 828  FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGM 887

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAE 940
            D+ +IE Q +++  +   EFD  +R + MD         LQ  IDD  +  EL+   D E
Sbjct: 888  DAAFIEKQNIETFALSDKEFDHRYRVDVMDPAGGFTENALQVGIDD--SSLELQSKLDEE 945

Query: 941  VQKLEADRYQLATEI--ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
              +L  DR  L   I    S +  + LPVNL+RL+ NA + F +D R+PSD+ P  +V++
Sbjct: 946  YARLVEDRRLLRNFIFPRRSANVDFYLPVNLQRLVQNASQIFHIDRRKPSDLDPAYIVDS 1005

Query: 999  VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            + +L +RL +V G+DPLS EAQ N+TL F + LR+TFA+++V+++ RLTREAFEW++GEI
Sbjct: 1006 IHELGKRLVIVRGDDPLSKEAQDNSTLLFRMHLRATFAARKVIEQMRLTREAFEWILGEI 1065

Query: 1059 ESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK 1118
            E++F QS+  PGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA 
Sbjct: 1066 ETKFNQSIAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAT 1125

Query: 1119 KIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEF 1178
             IKTPSL++ L+P +    E AKNVQ  L +T+L++VT A E+WYDP+P  TIIEED  F
Sbjct: 1126 NIKTPSLTIHLQPEIAVAPELAKNVQQELAFTSLKTVTSAVEIWYDPNPTTTIIEEDEVF 1185

Query: 1179 VKSYYEMPDEDIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
            V+S++ +PDE+I     K SPWLLR+ L+R  M+D+KL+M  VA +I + F  DL  I++
Sbjct: 1186 VESFFAIPDEEIERNLHKQSPWLLRLVLDRSKMLDRKLTMHYVASRIAECFKSDLFVIWS 1245

Query: 1237 DDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---------- 1286
            +DN++ L++R R+++    K +  +   E+D+FL+++E+ ML  + LRGV          
Sbjct: 1246 EDNSETLVIRCRVLS-SGDKDDPEEVGLEEDIFLRQLENTMLNSVTLRGVRGINRVFLTA 1304

Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                       NL  VMC + VD+ RT SN+ +EI  VLG+EA 
Sbjct: 1305 SDRVTLAPDGSIKTEKGAEWILETDGTNLKGVMCLDGVDSTRTYSNNCVEIFTVLGVEAA 1364

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R AL+ E+R VI FDGSYVNYRHL +LCD MT+RG LM ITRHGINR DTG +MRCSFEE
Sbjct: 1365 RAALMKEIRNVIEFDGSYVNYRHLGLLCDVMTHRGTLMPITRHGINRADTGALMRCSFEE 1424

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI-ELQLPSYME 1438
            TV+IL++AA   E D   G+ EN+M GQ+AP+GTG   + L+ +MLK+AI + +LP    
Sbjct: 1425 TVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFDVALDIDMLKDAIVDHRLPVQ-- 1482

Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGYL-FSPNLRLSP--VTDAQFSPYVGGMAFSPTSS 1495
                 M  A+         DG M+PG +  +P    SP  + D  F    G  AFSP +S
Sbjct: 1483 ----SMLAAQI--------DGAMTPGQVAITPYATNSPDWIQDEFFKGDSGPSAFSPLAS 1530

Query: 1496 PGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSP-GYSPTSPTYSPSSPGYSPTSPAY 1554
             G   ++     S P     + G SP  PGYSP+SP  YSPTSP   P SP  +PTSP  
Sbjct: 1531 NGAEDTANFQYMSFPQSPHGAGGMSP-GPGYSPSSPNAYSPTSPGMVPRSPYGAPTSPFS 1589

Query: 1555 S--PTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSY-SPT 1606
            +   TSP Y      TSP+YSPTSP    TSP+YSPTSP +SPTSP+ YSP SP++ SP 
Sbjct: 1590 NQYATSPFYDSRRQATSPTYSPTSPIAGLTSPAYSPTSPGFSPTSPNGYSPQSPNFGSPA 1649

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1666
            SP YSP SP+YSP SPA        SPTSP YSP SP  SP SP Y P SPS+SP SPAY
Sbjct: 1650 SPNYSPASPSYSPASPA------GMSPTSPRYSPASPGASPMSPKYPPASPSFSPASPAY 1703

Query: 1667 SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA-KYSPS 1704
            SP SP YSP+SP++SPTSP +    P+ N  SA + SPS
Sbjct: 1704 SPASPNYSPSSPTWSPTSPAHDQNGPTNNRSSAYQQSPS 1742



 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 122/263 (46%), Positives = 153/263 (58%), Gaps = 26/263 (9%)

Query: 1523 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSP-AYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1581
            +PG    +P Y+  SP +         + P A+SP + + +  + ++   S   SP    
Sbjct: 1494 TPGQVAITP-YATNSPDWIQDEFFKGDSGPSAFSPLASNGAEDTANFQYMSFPQSPHGAG 1552

Query: 1582 YSPTSPSYSPTSP-SYSPTSPSYSPTSPAYSPTSPAYS--PTSPAY----SPTSPSYSPT 1634
                 P YSP+SP +YSPTSP   P SP  +PTSP  +   TSP Y      TSP+YSPT
Sbjct: 1553 GMSPGPGYSPSSPNAYSPTSPGMVPRSPYGAPTSPFSNQYATSPFYDSRRQATSPTYSPT 1612

Query: 1635 SPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPAY-SPTSPGYSPTSPSYSPTSPT-YSPTS 1691
            SP    TSP+YSPTSP +SPTSP+ YSP SP + SP SP YSP SPSYSP SP   SPTS
Sbjct: 1613 SPIAGLTSPAYSPTSPGFSPTSPNGYSPQSPNFGSPASPNYSPASPSYSPASPAGMSPTS 1672

Query: 1692 PSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSP 1750
            P Y             SP+SP  SP SP Y P SP++SP S +YSP SP+YSPSSPT+SP
Sbjct: 1673 PRY-------------SPASPGASPMSPKYPPASPSFSPASPAYSPASPNYSPSSPTWSP 1719

Query: 1751 SSPYNAGGGNPDYSPSSPQYSPS 1773
            +SP +   G  +   S+ Q SPS
Sbjct: 1720 TSPAHDQNGPTNNRSSAYQQSPS 1742



 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/248 (43%), Positives = 137/248 (55%), Gaps = 31/248 (12%)

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
            +PG    +P Y+  SP +         + PS +SP + + +  + ++   S   SP    
Sbjct: 1494 TPGQVAITP-YATNSPDWIQDEFFKGDSGPSAFSPLASNGAEDTANFQYMSFPQSPHGAG 1552

Query: 1603 YSPTSPAYSPTSP-AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
                 P YSP+SP AYSPTSP   P SP  +PTSP     S  Y+ TSP Y     +   
Sbjct: 1553 GMSPGPGYSPSSPNAYSPTSPGMVPRSPYGAPTSP----FSNQYA-TSPFYDSRRQA--- 1604

Query: 1662 TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS 1721
            TSP YSPTSP    TSP+YSPTSP +SPTSP+             YSP SP        S
Sbjct: 1605 TSPTYSPTSPIAGLTSPAYSPTSPGFSPTSPN------------GYSPQSPNFG-----S 1647

Query: 1722 PTSPNYSPTSSSYSPTSPS-YSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPS 1779
            P SPNYSP S SYSP SP+  SP+SP YSP+SP  A   +P Y P+SP +SP++  YSP+
Sbjct: 1648 PASPNYSPASPSYSPASPAGMSPTSPRYSPASP-GASPMSPKYPPASPSFSPASPAYSPA 1706

Query: 1780 APGYSPSS 1787
            +P YSPSS
Sbjct: 1707 SPNYSPSS 1714



 Score =  119 bits (297), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 93/235 (39%), Positives = 122/235 (51%), Gaps = 37/235 (15%)

Query: 1575 YSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP 1633
            Y+  SP +         + PS +SP + + +  +  +   S   SP         P YSP
Sbjct: 1503 YATNSPDWIQDEFFKGDSGPSAFSPLASNGAEDTANFQYMSFPQSPHGAGGMSPGPGYSP 1562

Query: 1634 TSP-SYSPTSPSYSPTSPSYSPTSP--SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
            +SP +YSPTSP   P SP  +PTSP  +   TSP Y         TSP+YSPTSP    T
Sbjct: 1563 SSPNAYSPTSPGMVPRSPYGAPTSPFSNQYATSPFYDSRR---QATSPTYSPTSPIAGLT 1619

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASP--YSPTSPNYSPTSSSYSPTSPSYSPSSPTY 1748
            SP             AYSP+SP  SP SP  YSP SPN+       SP SP+YSP+SP+Y
Sbjct: 1620 SP-------------AYSPTSPGFSPTSPNGYSPQSPNFG------SPASPNYSPASPSY 1660

Query: 1749 SPSSPYNAGGGNPDYSPSSPQYSP--------SAGYSPSAPGYSPSSTSQYTPQT 1795
            SP+SP      +P YSP+SP  SP        S  +SP++P YSP+S + Y+P +
Sbjct: 1661 SPASPAGMSPTSPRYSPASPGASPMSPKYPPASPSFSPASPAYSPASPN-YSPSS 1714


>gi|409051067|gb|EKM60543.1| hypothetical protein PHACADRAFT_246551 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1753

 Score = 1820 bits (4715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 962/1747 (55%), Positives = 1217/1747 (69%), Gaps = 123/1747 (7%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLGTID 61
            +F YS A + KV+ VQFGILSP+EI+  SV +IEH E  +    KPK GGL DPRLGTID
Sbjct: 5    QFAYSAAPIRKVKEVQFGILSPEEIKAYSVAKIEHPEVMDETTHKPKIGGLMDPRLGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R  KC+TC   M+ECPGHFGH+ELA+P+FH GF+  V  I+  +C NC ++ AD  D  F
Sbjct: 65   RNFKCQTCGEGMSECPGHFGHIELARPVFHPGFVVKVKKILECICVNCGRLKADISDPTF 124

Query: 122  KQALK-IRNPKNRLKKILDACKNKTKCEGG---DEIDVPGQDGEEPLKKNKGGCGAQQPK 177
               ++ +R+PK R++ + + CK K  CE     DE D    + +EP K+  GGCGA QP+
Sbjct: 125  ADRIRHVRDPKARMQVVWNYCKGKMICEPDEPRDEND--NMENDEP-KRGHGGCGAAQPQ 181

Query: 178  LTIEGMKMIAEYKAQRKKNDDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
            +  EG+K+  +YK  R K++D+E +  +P   K+      V   LK+I D D  LLGL+ 
Sbjct: 182  IRKEGLKLFVQYK--RSKDEDEEVKTLQP--DKRLFPPHEVYNALKKIPDSDLHLLGLSD 237

Query: 237  KYARPDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            +YARP+WMIL V           + +    +R  DDLT++L  II+ + N+RR E+ GAP
Sbjct: 238  EYARPEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDIIKASANVRRCEQEGAP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
            AH+I+EF QLLQFH+ATY DN++ G P+A Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  AHVINEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT DP + +D++GVP SIA+NLT+PE VTPYNI  L++LV  GP   PG   A
Sbjct: 358  DFSARTVITGDPNLELDEVGVPRSIAMNLTFPERVTPYNIHWLQDLVRNGPTTYPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            +Y+++D G+R+DLRY  K +D  L+ G+ VERHL DGDFVLFNRQPSLHKMS+M HR+++
Sbjct: 415  RYVVKDTGERIDLRY-NKRADAFLQFGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRL 473

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVT PYNADFDGDEMNMHVPQS ETRAE+ ++  VP+ I+SPQ+N+PVMG
Sbjct: 474  MPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMG 533

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDTL G RK T RDTF++     NIL+W  D+DG VP P ++KP+PLWTGKQ+ ++ I
Sbjct: 534  IVQDTLCGIRKFTLRDTFLDWTQVQNILLWVPDWDGTVPTPVVIKPKPLWTGKQLLSMCI 593

Query: 586  PKQINLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            P+ IN+ R     + N   D G+L        IE GEL+ G + KKT+G S G L+HV++
Sbjct: 594  PRGINIHRNPDPKSSNPVFDDGVL--------IENGELIFGIVDKKTVGASQGGLVHVVF 645

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E GP+  R+     Q +VNYWL  N FSIGIGDTIAD KTM  I + I+  K  V  +I
Sbjct: 646  REKGPEMTRQLFTGLQQVVNYWLFHNGFSIGIGDTIADRKTMAHITEQIAIRKQTVAQII 705

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
              A    L+P+PG T+ ESFE+KV + LN ARD+ G  AQK L E NN+K MV AGSKGS
Sbjct: 706  DDAAHDRLKPQPGMTIRESFESKVERELNLARDQNGQYAQKHLKEDNNVKQMVVAGSKGS 765

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
            FINISQM+ CVGQQ VEG+RIPFGF  RTLPHFTKDD+ PE+RGFVENSYLRGLTPQEFF
Sbjct: 766  FINISQMSVCVGQQIVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEFF 825

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+MV YDGTVRNSLGD+IQF+YGEDGMD
Sbjct: 826  FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVHYDGTVRNSLGDLIQFVYGEDGMD 885

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAE 940
              +IE Q +++  +   EF+  +R ++ +    + P  +LQ  +DD  +  EL+   D E
Sbjct: 886  GAFIERQNIETFALSNREFEHDYRVDVTDPSGGFLPG-VLQLGLDD--SSLELQAKLDEE 942

Query: 941  VQKLEADRYQLATEIATSGD--SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
              +L  DR  L   I    D  ++  LPVNL R++ NA + F +D R+PSD+ P  +++A
Sbjct: 943  FSQLSEDRQLLREFIFPRSDPATARYLPVNLHRIVQNAVQIFHIDRRKPSDLEPAYIIDA 1002

Query: 999  VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            +  L ERL VV G+DPLS EAQ NATL F + LR+TFA++RVL+ + L +EA EWV+GEI
Sbjct: 1003 IRALCERLVVVRGDDPLSKEAQANATLLFRMHLRATFATRRVLERYHLNKEALEWVLGEI 1062

Query: 1059 ESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK 1118
            ES+F QSL  PGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA 
Sbjct: 1063 ESKFNQSLAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAT 1122

Query: 1119 KIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEF 1178
             IKTPSLSV+L+  +      AKNVQ  L YT+LR+VT A E+WYDPDP  TIIEED  F
Sbjct: 1123 NIKTPSLSVYLESKLAKDAALAKNVQQELAYTSLRTVTAAVEIWYDPDPTSTIIEEDSVF 1182

Query: 1179 VKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
            V+S++ +PDE++  +    SPWLLR+EL+R  M+D+KL+MA VA +I + F  DL  I++
Sbjct: 1183 VESFFAIPDEEVESKLHLQSPWLLRLELDRAKMIDRKLTMAYVAGRIAESFKTDLFVIWS 1242

Query: 1237 DDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------ 1284
            +DN++KLI+R R++   A K +    + E+D+FL+++E+ ML  ++LR            
Sbjct: 1243 EDNSEKLIVRCRVLGG-ADKEDDGMGTVEEDIFLRQLENTMLNSVSLRGVPSIERVFLLE 1301

Query: 1285 --------------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEA 1318
                                      GVNL AVM  + VD RRT SN  +E+  VLGIEA
Sbjct: 1302 HDKIIITPDGGIDARGGEKEWVLETDGVNLKAVMTVDGVDFRRTYSNSCVEVFGVLGIEA 1361

Query: 1319 VRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE 1378
             R A++ ELR VI FDGSYVNYRHLA+LCD MT+RG LMAITRHGINR DTG +MRCSFE
Sbjct: 1362 ARAAIMKELRGVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRADTGALMRCSFE 1421

Query: 1379 ETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI-ELQLPSYM 1437
            ETV+IL++AA   E D   G+ EN+M GQ+AP+GTG   + L+ +MLK+ I + ++P++ 
Sbjct: 1422 ETVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFDVALDIDMLKDVIVDHRIPAHT 1481

Query: 1438 E----GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYV--GG---- 1487
                  ++ GMTP +  V+ TPY     SP  +++P+      T A FSP    GG    
Sbjct: 1482 SLVAPQMDGGMTPGQ--VAMTPYDSS--SP--VWNPDGSFKGET-AAFSPLAMNGGEDAA 1534

Query: 1488 ----MAF--SPTSSPGYSPSSPGYSPSSPG-YSPTSPGYSPTSPGYSPTSP-GYSP--TS 1537
                M F  SP  +   SP++PGYSPSSP  YSPTSP Y P SP    TSP G SP  TS
Sbjct: 1535 SFSYMPFGQSPMGAGSMSPAAPGYSPSSPNVYSPTSP-YVPQSPFAGATSPFGTSPYATS 1593

Query: 1538 PTY----SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
            P Y     P+SP YSPTSPA + TSP YSPTSP YSPTSPS+SPTSP YSP SPS+SPTS
Sbjct: 1594 PFYDRSRGPTSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTS 1653

Query: 1594 PSYSPTSPSYSPTSPAYSPTSPA-YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1652
            P YSPTSPS+SP SP YSPTSPA  SP SP YSPTSP  SP SP YSPTSP+YSP SP+Y
Sbjct: 1654 PRYSPTSPSFSPASPRYSPTSPAQMSPASPKYSPTSP-VSPASPKYSPTSPTYSPASPAY 1712

Query: 1653 SPTSPSY 1659
            SP SP+Y
Sbjct: 1713 SPASPAY 1719



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 116/255 (45%), Positives = 149/255 (58%), Gaps = 34/255 (13%)

Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
            G +P   A +P    Y  +SP ++P   S+   + ++SP + +    + S+S      SP
Sbjct: 1491 GMTPGQVAMTP----YDSSSPVWNPDG-SFKGETAAFSPLAMNGGEDAASFSYMPFGQSP 1545

Query: 1606 T-SPAYSPTSPAYSPTSP-AYSPTSPSYSPTSPSYSPTSP-SYSP--TSPSYSPTSPSYS 1660
              + + SP +P YSP+SP  YSPTSP Y P SP    TSP   SP  TSP Y     S  
Sbjct: 1546 MGAGSMSPAAPGYSPSSPNVYSPTSP-YVPQSPFAGATSPFGTSPYATSPFYDR---SRG 1601

Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPY 1720
            PTSP YSPTSP  + TSP YSPTSP YSPTSPS+             SP+SPR      Y
Sbjct: 1602 PTSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSF-------------SPTSPR------Y 1642

Query: 1721 SPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSA 1780
            SP SP++SPTS  YSPTSPS+SP+SP YSP+SP      +P YSP+SP    S  YSP++
Sbjct: 1643 SPQSPSFSPTSPRYSPTSPSFSPASPRYSPTSPAQMSPASPKYSPTSPVSPASPKYSPTS 1702

Query: 1781 PGYSPSSTSQYTPQT 1795
            P YSP+S + Y+P +
Sbjct: 1703 PTYSPASPA-YSPAS 1716



 Score =  160 bits (404), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 119/252 (47%), Positives = 150/252 (59%), Gaps = 37/252 (14%)

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPS 1602
            +PG    +P Y  +SP ++P   S+   + ++SP + +    + S+S      SP  + S
Sbjct: 1493 TPGQVAMTP-YDSSSPVWNPDG-SFKGETAAFSPLAMNGGEDAASFSYMPFGQSPMGAGS 1550

Query: 1603 YSPTSPAYSPTSP-AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
             SP +P YSP+SP  YSPTSP Y P SP    TSP    TSP Y+ TSP Y     S  P
Sbjct: 1551 MSPAAPGYSPSSPNVYSPTSP-YVPQSPFAGATSPF--GTSP-YA-TSPFYDR---SRGP 1602

Query: 1662 TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-Y 1720
            TSP YSPTSP  + TSP YSPTSP YSPTSPS+             SP+SPR SP SP +
Sbjct: 1603 TSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSF-------------SPTSPRYSPQSPSF 1649

Query: 1721 SPTSPNYSPTSSSYSPTSPSYSPSSPT--------YSPSSPYNAGGGNPDYSPSSPQYSP 1772
            SPTSP YSPTS S+SP SP YSP+SP         YSP+SP +    +P YSP+SP YSP
Sbjct: 1650 SPTSPRYSPTSPSFSPASPRYSPTSPAQMSPASPKYSPTSPVSP--ASPKYSPTSPTYSP 1707

Query: 1773 SA-GYSPSAPGY 1783
            ++  YSP++P Y
Sbjct: 1708 ASPAYSPASPAY 1719


>gi|33326209|gb|AAQ08514.1| RNA polymerase II largest subunit [Welwitschia mirabilis]
          Length = 1013

 Score = 1820 bits (4715), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 859/1013 (84%), Positives = 934/1013 (92%), Gaps = 13/1013 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPMFHIGFMKTVLSI+R VCFNCS+ILADE+DH+FKQALKI+NPK+RL+KILD C
Sbjct: 1    HLELAKPMFHIGFMKTVLSILRCVCFNCSRILADEEDHRFKQALKIKNPKHRLEKILDCC 60

Query: 142  KNKTKCEGGDEI-DVPGQDGEEPLKKN-KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            KNKTKCEGGD I D  GQD +E +KK   GGCG+QQPK+TI+GMK+IAEYKA RKK D+Q
Sbjct: 61   KNKTKCEGGDVIEDDQGQDVDEEVKKKPHGGCGSQQPKITIDGMKIIAEYKAPRKKADEQ 120

Query: 200  EQL-PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP-------- 250
            EQL PEPVERKQ L+AERVL +LKRISDE+CQ+LG NPKYARPDWMILQVLP        
Sbjct: 121  EQLMPEPVERKQQLSAERVLNILKRISDEECQMLGFNPKYARPDWMILQVLPIPPPPVRP 180

Query: 251  --IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
              +     R  DDLTHQLAMIIRHNENL++QE+NGAPAHI++EFAQLLQFH+ATYFDNEL
Sbjct: 181  SVMMNSTTRSEDDLTHQLAMIIRHNENLKKQEKNGAPAHIVTEFAQLLQFHVATYFDNEL 240

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
            PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INID+LGVPW
Sbjct: 241  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDELGVPW 300

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK+SSDHH
Sbjct: 301  SIALNLTYPEIVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKRSSDHH 360

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            LELGYKVERHLNDGD VLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD
Sbjct: 361  LELGYKVERHLNDGDLVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 420

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMNMHVPQSFETRAEV+ELMMVPKCIVSPQSNRPVMGIVQDTLLGCRK+TK DTF EKDV
Sbjct: 421  EMNMHVPQSFETRAEVMELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKVTKGDTFTEKDV 480

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
            FMNILMWWE+F+GK+P P ILKPRP+WTGKQVFNLIIPKQINL R +AWH +++KG  T 
Sbjct: 481  FMNILMWWEEFEGKIPNPAILKPRPIWTGKQVFNLIIPKQINLIRYSAWHNESEKGFPTP 540

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            GDT+VRIEKGE+LSGTLCKKTLG+S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 
Sbjct: 541  GDTVVRIEKGEVLSGTLCKKTLGSSSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQ 600

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDTIADA TME IN+TI+ AK  V+ LI++AQ+K LE EPGRTMMESFEN+VNQ
Sbjct: 601  GFSIGIGDTIADAATMEKINETIANAKIKVQQLIEKAQEKKLEAEPGRTMMESFENQVNQ 660

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
            VLN ARD+AG+SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF 
Sbjct: 661  VLNKARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFN 720

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             RTLPHFTKDD GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR
Sbjct: 721  GRTLPHFTKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 780

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKAMEDIMVKYDGTVRNSLGDV QFLYGEDGMD+VWIESQ LDSLKMKK EFD  +++E
Sbjct: 781  LVKAMEDIMVKYDGTVRNSLGDVTQFLYGEDGMDAVWIESQKLDSLKMKKREFDDVYKYE 840

Query: 909  MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
            +D+ENWNP YML E+I+DLKTI+E ++V DAEVQ LE DR QL TEIA SGD+SWPLPVN
Sbjct: 841  LDQENWNPGYMLPEHIEDLKTIREFQNVCDAEVQHLENDRRQLGTEIAPSGDNSWPLPVN 900

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            LKRLIWNAQK FK+DPR+ SDMHPME+++A+DKLQERLKVVPG DPLS+EAQKNATLFFN
Sbjct: 901  LKRLIWNAQKLFKIDPRKASDMHPMEIIDAIDKLQERLKVVPGNDPLSIEAQKNATLFFN 960

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            ILLRSTFASKRVLKE+ LT+EAF+WVIGEIE+RFLQSLV+PGEMIGCVAAQSI
Sbjct: 961  ILLRSTFASKRVLKEYHLTKEAFDWVIGEIETRFLQSLVSPGEMIGCVAAQSI 1013


>gi|393219057|gb|EJD04545.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Fomitiporia mediterranea MF3/22]
          Length = 1782

 Score = 1817 bits (4707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 962/1805 (53%), Positives = 1232/1805 (68%), Gaps = 135/1805 (7%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTID 61
            +F +S A + KV+ VQFGILSP+EI+  SV +IEH E  +    K K GGL+DPR+GT D
Sbjct: 5    QFAHSAAPIRKVKEVQFGILSPEEIKAYSVAKIEHPEVIDEATHKLKVGGLNDPRMGTTD 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILAD------ 115
            R  KC+TC   MAECPGHFGH+ELA+P+FH GF+  V  I+  +C NC K+ AD      
Sbjct: 65   RNFKCQTCGEGMAECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADTSSITG 124

Query: 116  -------------------------EDDHKFKQALKI-RNPKNRLKKILDACKNKTKCE- 148
                                     + D  F   +++ R+PK R+  +   CK K  C+ 
Sbjct: 125  RSSSRAWVVRVIGRLTAALTIAHASQTDPAFADRIRLARDPKRRMAAVWSYCKGKMTCQP 184

Query: 149  GGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
              D+ D  G +  EPLKK  GGCG QQP++  EG+K++  YK  + + +++ +  +P   
Sbjct: 185  DEDQGDAEGMENVEPLKKGHGGCGHQQPQIRKEGLKLLLHYKKNKNEEEEEFKAAQP--D 242

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-----------LPIPPPPVR 257
            K+  T   V  VL++ISDED  LLGL+ +YARPDWMIL V           +      +R
Sbjct: 243  KRPFTPAEVFNVLRKISDEDLGLLGLSEEYARPDWMILTVLPVPPPPVRPSISADGGALR 302

Query: 258  PSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQR 317
              DDLT++L  II+ + N+RR E  GAPAH+ISEF QLLQFH+ATY DN++ G P+A Q+
Sbjct: 303  SEDDLTYKLGDIIKASANVRRCEEEGAPAHVISEFEQLLQFHVATYMDNDIAGIPQALQK 362

Query: 318  SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYP 377
            SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT DP + +D++GVP SIA+ LTYP
Sbjct: 363  SGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMTLTYP 422

Query: 378  ETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVER 437
            E VTPYNI  L+ LV  GP   PG   A+Y+IRD G+R+DLRY K++ D  L+ G+ VER
Sbjct: 423  ERVTPYNIAYLQGLVRNGPREYPG---ARYVIRDTGERIDLRYNKRA-DAFLQYGWIVER 478

Query: 438  HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
            HL DGD+VLFNRQPSLHKMS+M HR+++MPYSTFRLNLSVT PYNADFDGDEMNMHVPQS
Sbjct: 479  HLKDGDYVLFNRQPSLHKMSMMCHRVRLMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQS 538

Query: 498  FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 557
             ETRAE+ ++  V K I+SPQ+N+PVMGIVQDTL G RK T RD F++     NIL+W  
Sbjct: 539  EETRAELSQIAWVAKQIISPQANKPVMGIVQDTLCGIRKFTLRDCFLDWQQVQNILLWVP 598

Query: 558  DFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGDTLVR 614
            ++DG +P PTILKP+PLW+GKQ+ +L IP+ IN++R+    + N   D G+L        
Sbjct: 599  NWDGTIPTPTILKPKPLWSGKQILSLTIPRGINIYRSPDPKSSNPVFDDGML-------- 650

Query: 615  IEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGI 674
            IE GE++ G + KKT+G S G LIHV + E GP+A R      Q +VNYWL  N FSIGI
Sbjct: 651  IENGEIIFGVVEKKTVGASQGGLIHVCFREKGPEATRTLFTGLQQVVNYWLFHNGFSIGI 710

Query: 675  GDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR 734
            GDT+AD KTM  I + I   K NV   ++ A    L+  PG T+ ESFE++V + LN AR
Sbjct: 711  GDTVADKKTMAYITEQIKMRKQNVAKAVEDASSDRLKAAPGMTIRESFESRVERELNLAR 770

Query: 735  DEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPH 794
            D +G  AQK+L E NN+K MV AGSKGSFINISQM+ CVGQQ+VEGKRIPFGF  RTLPH
Sbjct: 771  DHSGQYAQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGKRIPFGFRHRTLPH 830

Query: 795  FTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAME 854
            FTKDD+ PE+RGFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E
Sbjct: 831  FTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALE 890

Query: 855  DIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENW 914
            D+ V YDGTVRNSLGD+IQF+YGEDGMD  +IE QT+ +  +   EF+   R+ +D  + 
Sbjct: 891  DVTVCYDGTVRNSLGDLIQFVYGEDGMDGAFIERQTIRTFGINDREFEH--RYHVDVTDP 948

Query: 915  NPNYM---LQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP--LPVNL 969
               ++   LQ  IDD     EL++  D E ++L  DR  L   I    D+S    LPVNL
Sbjct: 949  KGGFLPGVLQVGIDDSSV--ELQEKLDTEYERLLEDRRLLREFIFPGRDNSTAHYLPVNL 1006

Query: 970  KRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNI 1029
             R++ NA + F +D R+PSD+ P  +++ + +L +RL VV G+D L+ EA +NA+L F +
Sbjct: 1007 NRIVQNATQIFHIDRRKPSDLEPAYIIDQIQQLADRLIVVRGDDHLTREAAENASLAFKM 1066

Query: 1030 LLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1089
             LR+TFA++ VL+E  L REAF+WV+GE+E++F QS+  PGEM G +AAQSIGEPATQMT
Sbjct: 1067 HLRATFAARPVLEEFHLNREAFDWVLGEVETKFNQSMAHPGEMCGTLAAQSIGEPATQMT 1126

Query: 1090 LNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEY 1149
            LNTFHYAGVS+KNVTLGVPRL+EIINVA+KIKTPSL+V+L+P + +   RAK+VQ  L Y
Sbjct: 1127 LNTFHYAGVSSKNVTLGVPRLKEIINVAEKIKTPSLTVYLEPEIAAVDTRAKSVQTELAY 1186

Query: 1150 TTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAP--EKISPWLLRIELNRE 1207
            T+LR+VT A E+WYDPD   T+IEED EFV +++ +PDE+I       SPWLLR+EL+R 
Sbjct: 1187 TSLRTVTAAVEIWYDPDQATTVIEEDKEFVDAFFAIPDEEIEANIHFQSPWLLRLELDRS 1246

Query: 1208 MMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDD 1267
             M+D+KL+M  VA +I + F  DL  I+++DNA+KLI+R R+++ +  K E + ++ E+D
Sbjct: 1247 KMLDRKLTMNYVAGRIAESFKTDLFVIWSEDNAEKLIIRCRVIS-QGDKDEEDGDTVEED 1305

Query: 1268 VFLKKIESNMLTEMALRGV------------------------------------NLLAV 1291
            +FL+++E  ML  ++LRGV                                    NL  V
Sbjct: 1306 IFLRQLEHTMLNSVSLRGVPGISRVFLLAHDKIVVADDGSIQKGDKEWVLETDGVNLKTV 1365

Query: 1292 MCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMT 1351
            MC + VD +RT SN  +EI  VLGIEA R A++ E+R VI FDGSYVNYRHLA+LCD MT
Sbjct: 1366 MCIDGVDWKRTYSNSCVEIFGVLGIEAARAAIMKEMRNVIEFDGSYVNYRHLALLCDLMT 1425

Query: 1352 YRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPI 1411
            +RG LMAITRHGINR DTG +MRCSFEETV+IL++AA   E D   G+ EN+M GQ+AP+
Sbjct: 1426 HRGSLMAITRHGINRADTGALMRCSFEETVEILMEAAAVGEKDDCHGIAENVMFGQMAPM 1485

Query: 1412 GTGDCSLYLNDEMLKNAI---ELQLPSYMEG-LEFGMTPARSPVSGTPYHDGMMSPGYLF 1467
            GTG   + L+ +MLK+ I    L + S +    + GMTP +  V+ TPY     SP  ++
Sbjct: 1486 GTGAFDVALDMDMLKDVIVDHRLPVQSMLAAQADGGMTPGQ--VAMTPYDSN--SP--MW 1539

Query: 1468 SPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP-GY 1526
            S ++       A FSP  G     P++   ++    G SP   G     PGYSP+SP  Y
Sbjct: 1540 SSDMAFKG-EQAAFSPLAGTGGDEPSA---FAAFPYGRSPMGAGGMSPGPGYSPSSPNAY 1595

Query: 1527 SPTSPGYSPTSPTYSPSSP-GYSP--TSPAY---SPTSPSYSPTSPSYSPTSPSYSPTSP 1580
            SPTSP Y P SP    +SP G SP  TSP Y   + TSP+YSPTSP+ + TSP+YSPTSP
Sbjct: 1596 SPTSP-YVPQSPYAGATSPFGTSPYATSPFYNRGAATSPTYSPTSPALNLTSPNYSPTSP 1654

Query: 1581 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY-SPTSPSYS 1639
             YSPTSPS+SPTSP YSP SPS+SPTSP YSPTSP++SP SP YSPTSP + SPTSP YS
Sbjct: 1655 RYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRYSPTSPVHQSPTSPKYS 1714

Query: 1640 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
            PTSP  SP SP YSPTSP+YSPTSP YSP SP YSPTSP +SP+SP  +    +   + +
Sbjct: 1715 PTSPQ-SPASPKYSPTSPAYSPTSPTYSPASPAYSPTSPQWSPSSPAQNSNMQNGTTRHS 1773

Query: 1700 KYSPS 1704
             YS S
Sbjct: 1774 AYSTS 1778



 Score =  167 bits (423), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 128/273 (46%), Positives = 164/273 (60%), Gaps = 37/273 (13%)

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1603
            +PG    +P Y   SP +S +  ++     ++SP + +      +++      SP     
Sbjct: 1523 TPGQVAMTP-YDSNSPMWS-SDMAFKGEQAAFSPLAGTGGDEPSAFAAFPYGRSPMGAGG 1580

Query: 1604 SPTSPAYSPTSP-AYSPTSPAYSPTSPSYSPTSP-SYSP--TSPSY---SPTSPSYSPTS 1656
                P YSP+SP AYSPTSP Y P SP    TSP   SP  TSP Y   + TSP+YSPTS
Sbjct: 1581 MSPGPGYSPSSPNAYSPTSP-YVPQSPYAGATSPFGTSPYATSPFYNRGAATSPTYSPTS 1639

Query: 1657 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSP 1716
            P+ + TSP YSPTSP YSPTSPS+SPTSP YSP SPS++P S +YSP+   SPS      
Sbjct: 1640 PALNLTSPNYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPT---SPS------ 1690

Query: 1717 ASP----YSPTSPNY-SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYS 1771
             SP    YSPTSP + SPTS  YSPTSP  SP+SP YSP+SP         YSP+SP YS
Sbjct: 1691 FSPASPRYSPTSPVHQSPTSPKYSPTSPQ-SPASPKYSPTSPA--------YSPTSPTYS 1741

Query: 1772 PSA-GYSPSAPGYSPSSTSQYTPQTNRDDSTTK 1803
            P++  YSP++P +SPSS +Q    +N  + TT+
Sbjct: 1742 PASPAYSPTSPQWSPSSPAQ---NSNMQNGTTR 1771



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 119/273 (43%), Positives = 157/273 (57%), Gaps = 40/273 (14%)

Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
            G +P   A +P    Y   SP +S +  ++     ++SP + +      +++      SP
Sbjct: 1521 GMTPGQVAMTP----YDSNSPMWS-SDMAFKGEQAAFSPLAGTGGDEPSAFAAFPYGRSP 1575

Query: 1606 TSPAYSPTSPAYSPTSP-AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY---SP 1661
                     P YSP+SP AYSPTSP Y P SP    TSP    TSP Y+ TSP Y   + 
Sbjct: 1576 MGAGGMSPGPGYSPSSPNAYSPTSP-YVPQSPYAGATSPF--GTSP-YA-TSPFYNRGAA 1630

Query: 1662 TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-Y 1720
            TSP YSPTSP  + TSP+YSPTSP YSPTSPS+             SP+SPR SP SP +
Sbjct: 1631 TSPTYSPTSPALNLTSPNYSPTSPRYSPTSPSF-------------SPTSPRYSPQSPSF 1677

Query: 1721 SPTSPNYSPTSSSYSPTSPSYSPSSPT--------YSPSSPYNAGGGNPDYSPSSPQYSP 1772
            SPTSP YSPTS S+SP SP YSP+SP         YSP+SP +    +P YSP+SP YSP
Sbjct: 1678 SPTSPRYSPTSPSFSPASPRYSPTSPVHQSPTSPKYSPTSPQSP--ASPKYSPTSPAYSP 1735

Query: 1773 SA-GYSPSAPGYSPSSTSQYTPQTNRDDSTTKD 1804
            ++  YSP++P YSP+S  Q++P +   +S  ++
Sbjct: 1736 TSPTYSPASPAYSPTS-PQWSPSSPAQNSNMQN 1767


>gi|260796451|ref|XP_002593218.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
 gi|229278442|gb|EEN49229.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
          Length = 1934

 Score = 1815 bits (4701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 926/1648 (56%), Positives = 1163/1648 (70%), Gaps = 120/1648 (7%)

Query: 2    DTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGT 59
            DT  P  P     V+ VQFGILSPDEI++MSV +  I + E  E G+PK  GL DPR G 
Sbjct: 10   DTSAPLRP-----VKRVQFGILSPDEIKRMSVTEGGIRYSEMMEGGRPKLCGLMDPRQGV 64

Query: 60   IDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH 119
            IDR  +C+TC  NMAECPGHFGH+ELAKP++HIGF+   + IMR VCF CSK+L   DD 
Sbjct: 65   IDRSARCQTCAGNMAECPGHFGHIELAKPVYHIGFLTKTIKIMRCVCFFCSKLLVSPDDP 124

Query: 120  KFKQALKIR--NPKNRLKKILDACKNKTKCEGGDEID--VPGQDGEEPLKKNKGGCGAQQ 175
            + K  +      PK RL  + D CK K  CEGGDE+D  V  ++G+E   K  GGCG  Q
Sbjct: 125  RIKDIVNKSKGQPKKRLTHVYDLCKGKMICEGGDEVDADVGPEEGKEEKPKGHGGCGRYQ 184

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P++   G+ + AE+K     N+D +      ERK  L+AERVL + KRISDE+C ++G++
Sbjct: 185  PQIRRAGLDLTAEWK---HVNEDSQ------ERKIQLSAERVLEIFKRISDEECSIMGMD 235

Query: 236  PKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAP 285
            P++ARPDWM+  VLP+ P  VRPS          DDLTH+LA I++ N  L+R E NGA 
Sbjct: 236  PRFARPDWMVCTVLPVAPLQVRPSVVMFGAARGQDDLTHKLADIVKINNQLKRNEMNGAA 295

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
            AHII+E  ++LQFH+ T  DNE+PG PRA Q+SGRP+KS+  RLK KEGRIRGNLMGKRV
Sbjct: 296  AHIIAEDTKMLQFHVTTLVDNEVPGMPRAVQKSGRPLKSVKQRLKGKEGRIRGNLMGKRV 355

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSAR VITPDP + IDQ+G P ++A NLT+PE VTP+NI+R++ELV  G +  PG   A
Sbjct: 356  DFSARAVITPDPNLQIDQVGCPRTVAQNLTFPEIVTPFNIDRMQELVRRGANQYPG---A 412

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KYIIRD G R+DLRY  K SD HL+ GYKVERH+ D D V+FNRQP+LHKMS+MGHR+KI
Sbjct: 413  KYIIRDTGHRIDLRYHPKPSDLHLQCGYKVERHIRDDDIVIFNRQPTLHKMSMMGHRVKI 472

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            +P+STFRLNLSVT+PYNADFDGDEMNMHVPQS ETRAE++EL MVP+ I++PQSNRPVMG
Sbjct: 473  LPWSTFRLNLSVTTPYNADFDGDEMNMHVPQSVETRAEIMELAMVPRMIITPQSNRPVMG 532

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDTL   RK TKRD FI+++  MN+LMW   +DGK+PQP ILKP+PLWTGKQ+F+LII
Sbjct: 533  IVQDTLTAVRKFTKRDVFIDRNDMMNLLMWLPTWDGKMPQPAILKPKPLWTGKQLFSLII 592

Query: 586  PKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            P  +N  R  + H D  D G    ++ GDT V +E GEL+SG LCKK+LG S GSL+H++
Sbjct: 593  PGHVNCIRMHSTHPDEEDSGPYKWISPGDTKVIVENGELISGILCKKSLGPSGGSLVHIV 652

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
              E+G + ++ F G+ Q +VN WLL    +IGIGD IAD +T + I +TI KAK +V  +
Sbjct: 653  ALEMGHETSKLFYGYIQTVVNNWLLLEGHTIGIGDCIADTQTYQDIQNTIKKAKLDVIEV 712

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
            I++A +  LEP PG T+ ++FEN+VN++LN ARD+ G SAQKSLSE NN K+MV AGSKG
Sbjct: 713  IEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKSMVVAGSKG 772

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF
Sbjct: 773  SKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 832

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAMGGREGLIDTAVKTSETGYIQRRL+KAME +M+ YDGTVRNS   ++Q  YGEDG+
Sbjct: 833  FFHAMGGREGLIDTAVKTSETGYIQRRLIKAMESVMIAYDGTVRNSNRHLVQLRYGEDGL 892

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
            D+V IE Q L +LK     F+K F+ +   E +    + ++ + ++ +   L+   +AE 
Sbjct: 893  DAVSIEFQNLATLKPSNRSFEKKFKLDYQNERYLRRILQEDIVREITSDARLQTEIEAEF 952

Query: 942  QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
            ++L  DR  L + +  +GD+   LP NL R+IWNAQK F V+ R P+D+HP++VVE V  
Sbjct: 953  EQLRVDRDVLRS-VNQTGDAKVALPCNLARIIWNAQKIFHVNTRAPTDLHPIKVVEGVRD 1011

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L  +L +V G+DP+S++AQ NAT+ FN LLRST  ++RVL+E RL+ EAF+W++GEIESR
Sbjct: 1012 LSRKLVIVKGDDPISIQAQANATILFNTLLRSTLCTRRVLEEFRLSTEAFDWLLGEIESR 1071

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F Q++V PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+KK K
Sbjct: 1072 FNQAIVQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPK 1131

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPSL+VFL     +  E+AK++ C LE+TTLR VT  T ++YDPDP  T+IEED EFV  
Sbjct: 1132 TPSLTVFLLGQPANDAEKAKDILCRLEHTTLRKVTANTAIYYDPDPQNTVIEEDQEFVNV 1191

Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M ++AEKIN  F DDL CIFNDDNA+
Sbjct: 1192 YYEMPDFD--PHRISPWLLRIELDRKRMTDKKLTMESIAEKINAGFGDDLNCIFNDDNAE 1249

Query: 1242 KLILRIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR-------------- 1284
            KL+LRIRIMN++  K    +E     +DDVFL+ IE+NMLT+M L+              
Sbjct: 1250 KLVLRIRIMNNDDSKMMDEEEMVDKMDDDVFLRCIEANMLTDMTLQGIEQIAKVYMHLPQ 1309

Query: 1285 --------------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEA 1318
                                      GVNL+ V+  ++VD  RTTSN ++EI ++LGIEA
Sbjct: 1310 QDTKKRIIITDEGEYKALQEWILETDGVNLMKVLSEKNVDPVRTTSNDIVEIFQILGIEA 1369

Query: 1319 VRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE 1378
            VR+A+  E+  VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR + GP+M+CSFE
Sbjct: 1370 VRKAIEKEMNHVISFDGSYVNYRHLALLCDIMTQKGHLMAITRHGINRQEVGPLMKCSFE 1429

Query: 1379 ETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME 1438
            ETVDIL+++A  +E+D++ GV+ENIMLGQLA IGTG   L L+ E  K  +E+       
Sbjct: 1430 ETVDILMESASHSETDFMWGVSENIMLGQLARIGTGSFDLMLDAEKCKYGMEIPTNLVGG 1489

Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPY--VG----GMAFSP 1492
            GL  G  P              M  G   SP   +SP    Q +P+  VG    G A+SP
Sbjct: 1490 GLMAGPGPG-------------MFFGNAGSPTASMSP----QMTPWQQVGTPAYGGAWSP 1532

Query: 1493 TSSPGYSPSSPGYSPSSP----GYSPT--SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG 1546
                G +P + G+SPS+     G SP   SP +SPT PG SP SPG  P SP Y PS  G
Sbjct: 1533 GLGSGMTPGAAGFSPSAASDASGMSPAGYSPAWSPT-PG-SPGSPG--PASP-YIPSPGG 1587

Query: 1547 YSPTSPAYSPTSPSYSPTSP-SYSPTSP 1573
              P SP+YSP SP+Y P SP   +P SP
Sbjct: 1588 --PMSPSYSPASPAYMPRSPGGMTPQSP 1613



 Score =  126 bits (317), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 84/101 (83%), Gaps = 3/101 (2%)

Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
            +YSP+S  YSP SPSYSP++P Y+PTSP YSP SP Y+PTSP YSPTSPSY+P +P YSP
Sbjct: 1821 TYSPSSAKYSPASPSYSPSTPKYTPTSPKYSPASPTYTPTSPKYSPTSPSYTPDTPKYSP 1880

Query: 1648 TSPSYSPTSPSYSPTSP---AYSPTSPGYSPTSPSYSPTSP 1685
            TSP YSPTSP+YSPTSP    YSPT+PGYSP SP+YSP SP
Sbjct: 1881 TSPKYSPTSPTYSPTSPKGSTYSPTTPGYSPASPTYSPESP 1921



 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/144 (46%), Positives = 88/144 (61%), Gaps = 30/144 (20%)

Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
            +YSP+S  YSP SP YSP++P Y+PTSP YSP SP+             Y+P+SP+    
Sbjct: 1821 TYSPSSAKYSPASPSYSPSTPKYTPTSPKYSPASPT-------------YTPTSPK---- 1863

Query: 1718 SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYS 1777
              YSPTSP+Y+P +  YSPTSP YSP+SPTYSP+SP  +      YSP++P      GYS
Sbjct: 1864 --YSPTSPSYTPDTPKYSPTSPKYSPTSPTYSPTSPKGS-----TYSPTTP------GYS 1910

Query: 1778 PSAPGYSPSSTSQYTPQTNRDDST 1801
            P++P YSP S      Q   +D +
Sbjct: 1911 PASPTYSPESPESRATQEEEEDES 1934


>gi|219127092|ref|XP_002183777.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405014|gb|EEC44959.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1706

 Score = 1813 bits (4695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 933/1737 (53%), Positives = 1189/1737 (68%), Gaps = 123/1737 (7%)

Query: 40   ETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL 99
            ET   G+P  GG +DPRLG +  K             PG+FGHL+LAKP++H GF  T L
Sbjct: 1    ETQVNGQPVYGGANDPRLGNLHDKSD-----------PGYFGHLDLAKPVYHQGFFNTTL 49

Query: 100  SIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD 159
              +R VCF+CS++    D+ KF++A++I++ K RL+ + ++ + K KC+           
Sbjct: 50   RALRCVCFHCSRLRMLPDEFKFQKAIQIKSRKRRLEALHESLRGKKKCDH---------- 99

Query: 160  GEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLG 219
                       C   QPK T    K+    +A   ++          + KQ L+ + V+ 
Sbjct: 100  -----------CQGVQPKYT----KVDLHVEADFPEDGMHGSTGGGGDSKQFLSGDTVVK 144

Query: 220  VLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAM 268
            + K+I +ED  LLGL+ ++ARPDW+++QVLP+PP  VRPS           DDLTHQL  
Sbjct: 145  IFKQIREEDIVLLGLDVQHARPDWLLVQVLPVPPLHVRPSVTVGGGTQSSEDDLTHQLVN 204

Query: 269  IIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSR 328
            +I+ N +L++   NG P  ++ +F   LQ ++A + DNEL G P+ TQRSGRP+K+I  R
Sbjct: 205  VIKSNLSLQQAVSNGEPQIVVEQFELALQHNVAAFMDNELRGMPQVTQRSGRPLKTITQR 264

Query: 329  LKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERL 388
            LK KEGRIRGNLMGKRVDFSARTVIT DP + I Q+GVP S+A+NLT P  VT +N   L
Sbjct: 265  LKGKEGRIRGNLMGKRVDFSARTVITADPNLGIHQVGVPRSVAMNLTVPIRVTAFNQAEL 324

Query: 389  KELVEYGP--HPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVL 446
              LV  GP  HP     GAK+IIR DG R+DLRY+K  S+  L  G+ VERHL D D VL
Sbjct: 325  SALVANGPTMHP-----GAKHIIRSDGTRIDLRYVKNKSELLLAHGWIVERHLRDDDIVL 379

Query: 447  FNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLE 506
            FNRQPSLHKMSIMGH+ K++ +STFRLNLS TSPYNADFDGDEMN+HVPQ    RAE   
Sbjct: 380  FNRQPSLHKMSIMGHKAKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQGLAARAEAEL 439

Query: 507  LMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQP 566
            +M+  + IVS QSNRPVM IVQD+LL  +K+TKR  FIEKD+  N+LMW   ++G++P P
Sbjct: 440  MMLSSRVIVSGQSNRPVMSIVQDSLLATQKMTKRSVFIEKDLCYNMLMWVPQWNGQIPIP 499

Query: 567  TILKPRPLWTGKQVFNLIIPKQINLFRTAA------WHADNDKGILTAGDTLVRIEKGEL 620
             ++KP+ LWTGKQ+ + I+PK +NL   A           N        D LV I+ GEL
Sbjct: 500  AVIKPKELWTGKQLLSTILPK-VNLKSKANNGPGKDARGKNMPNTFNMYDHLVTIQDGEL 558

Query: 621  LSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIAD 680
            L GT+ KKT+G+S G LIH  W +VG +   +F+   Q LVN+W+LQ +FSIG  D +AD
Sbjct: 559  LEGTVDKKTIGSSMGGLIHTAWLDVGFEETARFMNQIQQLVNHWILQYSFSIGAIDAVAD 618

Query: 681  AKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSS 740
            A TM  I  TI KAK  V++L++Q Q   LE +PGRTM+ESFE  VN+VLNTARD AG S
Sbjct: 619  ADTMRQIESTIDKAKRQVQDLVRQGQLGELEIQPGRTMIESFEQLVNKVLNTARDHAGKS 678

Query: 741  AQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDY 800
            AQ SL E+N++KAMVTAGSKGSFINISQ+ ACVGQQNVEGKRIP+GF  RTLPHF+KDD 
Sbjct: 679  AQSSLDETNSVKAMVTAGSKGSFINISQIIACVGQQNVEGKRIPYGFKKRTLPHFSKDDI 738

Query: 801  GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKY 860
            G ESRGFVENSYLRGL+PQEFFFHAMGGREGLIDTA KT+ETGYIQRRLVKAME +M +Y
Sbjct: 739  GSESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARY 798

Query: 861  DGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF-----EMDEENWN 915
            DGT+R S G ++QFLYGEDGMD+VWIE Q  DSL + K EF+K F F     E   +   
Sbjct: 799  DGTLRTSSGQIVQFLYGEDGMDAVWIEKQNFDSLTLAKPEFNKRFLFDTSSPEFGHDEQG 858

Query: 916  PNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL-----ATEIATSGDSSWPLPVNLK 970
              ++  + I++ +   +++   D E++ L  D+  L     + E     D S   P N++
Sbjct: 859  IPFLEPDVIEECRRDPDIQATLDQEIEILREDQAILRIVMRSREAGRESDDSSYAPGNVR 918

Query: 971  RLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 1030
            R+I NA + F++D  +P+D+HP EV++ V+ L ERL VV G DPLSVEAQ NAT  + IL
Sbjct: 919  RVIHNAMRQFRIDKSKPTDLHPTEVIQIVNNLLERLIVVVGNDPLSVEAQSNATTLYRIL 978

Query: 1031 LRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1090
            +R+  +SKRVLK+ RL++ A  WV+GEIE+RF  ++V PGEM G +AAQSIGEPATQMTL
Sbjct: 979  IRTMLSSKRVLKDWRLSKAALNWVVGEIETRFNIAMVNPGEMAGVLAAQSIGEPATQMTL 1038

Query: 1091 NTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYT 1150
            NTFHYAGVSAKNVTLGVPRL+EIINVAK  KTP L+++L+  V+  ++ A+ V   LE+T
Sbjct: 1039 NTFHYAGVSAKNVTLGVPRLKEIINVAKTPKTPGLTIYLQEEVSGDEKVAEQVVAMLEFT 1098

Query: 1151 TLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE-DIAPEKISPWLLRIELNREMM 1209
             L  V + TE++YDPD   T++ +D EFVK +Y+  D+ D    ++SPW+LR+EL++ ++
Sbjct: 1099 VLGDVVKKTEIYYDPDVKNTVVTKDREFVKEFYDFTDKTDDDLRRMSPWVLRVELDKPLL 1158

Query: 1210 VDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESA----- 1264
              KK+ M  +A++I +E+  DL     DDNAD++++RIRI+ND        DE       
Sbjct: 1159 YVKKIKMEEIAKEIGEEYGADLNVEVTDDNADEMVVRIRIVNDTPFNSGQTDEGGNLMDD 1218

Query: 1265 ------EDDVFLKKIESNMLTEMALRGV-------------------------------- 1286
                  EDD+FLK++E +ML+ + LRGV                                
Sbjct: 1219 QPEVGQEDDIFLKRLEKSMLSSLKLRGVDHVKKVFMRGGAKRTVWDDVKGFGVRDEWVLE 1278

Query: 1287 ----NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRH 1342
                NL+AV+  + VD  R+ SN ++E+   LGIE VR ALL ELR VISFDGSYVNYRH
Sbjct: 1279 TDGTNLMAVLGVDYVDGTRSVSNDIVEVFVALGIEGVRGALLSELRNVISFDGSYVNYRH 1338

Query: 1343 LAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTEN 1402
            LA L D MT +GHLMAI RHGINR DTGP++R SFEETVD+L+DAAV+AE + L+GVTEN
Sbjct: 1339 LACLVDVMTMQGHLMAIDRHGINRVDTGPLLRASFEETVDMLMDAAVYAEEEILKGVTEN 1398

Query: 1403 IMLGQLAPIGTGDCSLYLN-DEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMM 1461
            IM+GQLA +GTGD  L L+ D++++ A+E+ +  +    + GM         TPY     
Sbjct: 1399 IMMGQLARVGTGDVDLLLDEDKVVREAVEVVVDEFAVDKDLGMAGVGGVGGATPYATTPF 1458

Query: 1462 SPGYLFSPNLRLSPVTD--AQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGY 1519
            +   +       SP  D  A FSP VG  +FSP  SP       G++  S G +  SP Y
Sbjct: 1459 AASPMVGDGAAASPFVDGGAAFSPAVGAASFSPAYSPDSGSYGSGFASGSYG-AGDSPAY 1517

Query: 1520 SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1579
            SPTSP YSPTSP YSPTSP YSP+SP YSPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTS
Sbjct: 1518 SPTSPQYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTS 1577

Query: 1580 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS 1639
            P+YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSPAYSPTSPAYSPTSP+YSPTSP+YS
Sbjct: 1578 PAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1637

Query: 1640 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
            PTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP+Y+P
Sbjct: 1638 PTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1694



 Score =  266 bits (681), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 161/271 (59%), Positives = 190/271 (70%), Gaps = 34/271 (12%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT------SPSYSPTSPSYSP--TSPSY-S 1597
            Y+ T  A SP     +  SP +     ++SP       SP+YSP S SY     S SY +
Sbjct: 1453 YATTPFAASPMVGDGAAASP-FVDGGAAFSPAVGAASFSPAYSPDSGSYGSGFASGSYGA 1511

Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
              SP+YSPTSP YSPTSPAYSPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP
Sbjct: 1512 GDSPAYSPTSPQYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP 1571

Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
            +YSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP             AYSP+SP  SP 
Sbjct: 1572 AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP-------------AYSPTSPAYSPT 1618

Query: 1718 SP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-G 1775
            SP YSPTSP YSPTS +YSPTSP+YSP+SP YSP+SP         YSP+SP YSP++  
Sbjct: 1619 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA--------YSPTSPAYSPTSPA 1670

Query: 1776 YSPSAPGYSPSSTSQYTPQTNRDDSTTKDDK 1806
            YSP++P YSP+S + Y+P +     +  DDK
Sbjct: 1671 YSPTSPAYSPTSPA-YSPTSPAYSPSGGDDK 1700


>gi|29539342|dbj|BAC67672.1| DNA-directed RNA polymerase II largest subunit [Cyanidioschyzon
            merolae]
 gi|449019055|dbj|BAM82457.1| RNA polymerase II largest subunit [Cyanidioschyzon merolae strain
            10D]
          Length = 1819

 Score = 1813 bits (4695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 938/1815 (51%), Positives = 1239/1815 (68%), Gaps = 184/1815 (10%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKC 66
            +S AE+  V  VQFG+LSPDE+R++SVV++E+    ERG PK GG+ DPRLG IDR   C
Sbjct: 8    FSSAELKAVGAVQFGLLSPDELRRLSVVRVEYDVAFERGVPKAGGVLDPRLGAIDRNFPC 67

Query: 67   ETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK 126
             TC  +  +CPGHFGH+EL KP+F++  + TVL  +R VC+ CS++L D  D +  +A +
Sbjct: 68   ATCEGSSIDCPGHFGHIELVKPVFNVLMLSTVLKTLRCVCYYCSRLLVDGSDSRMLRAAR 127

Query: 127  IRNPKNRLKKILDACKNKTKCEGG-----DEIDVPGQ--DGEEPLKKNKGGCGAQQPKLT 179
            I++P  R + +   C     C GG     +++ +P    +  E + K + GCG  QP +T
Sbjct: 128  IKDPVKRFQAVFQLCNGTRVCGGGADSSEEQLMLPAAVLEARERIGKPREGCGNLQPHVT 187

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
             +G++++AE+        D E      ERKQ L AERV  + + I DED +LLG +P+++
Sbjct: 188  RDGLRILAEFP-------DAEAFA--AERKQELAAERVQQIFRHIRDEDLELLGFHPRFS 238

Query: 240  RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RP+WM+L VLP+PPP VRPS          DDLT +L  II+ N  L+R E  GAPAH+I
Sbjct: 239  RPEWMVLSVLPVPPPHVRPSIQMDAVSRGEDDLTFKLGDIIKANNALQRLEAEGAPAHVI 298

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
             E   LLQFH+AT+ +N+LPG PRAT RSGRP+KSI  RLK KEGR+R NLMGKRV+FSA
Sbjct: 299  REQYVLLQFHVATFMNNDLPGMPRATLRSGRPLKSIAQRLKGKEGRVRNNLMGKRVNFSA 358

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVIT DP + +D++GVP S+A+ LTYPE VTPYNI+RL E V  GP+  PG   A ++I
Sbjct: 359  RTVITADPQLALDEVGVPRSVAMTLTYPEVVTPYNIDRLWEAVRNGPNAYPG---ALFVI 415

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            R+DG+R+ L+++++S+D  LE G  VERHL +GD VLFNRQPSLH+MSIMGHR++I+PYS
Sbjct: 416  RNDGKRIALQFVRRSADIVLEPGCVVERHLLNGDLVLFNRQPSLHRMSIMGHRVRILPYS 475

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLS TSPYNADFDGDEMN+HVPQS E RAE+ ELM VPK IVSPQ+NRPVMGIVQD
Sbjct: 476  TFRMNLSATSPYNADFDGDEMNLHVPQSEEVRAEIKELMAVPKNIVSPQANRPVMGIVQD 535

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            +LLGC   T RDTF+E+D   N+L+    FDG++P P ILKPRPLWTGKQ+F+L++P  +
Sbjct: 536  SLLGCMLFTLRDTFLEEDTVFNLLLHLPHFDGRIPAPAILKPRPLWTGKQIFSLLLPDGV 595

Query: 590  NLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
            NL R +  H D+++ I+T  DT V I+ GEL++G + K+T+G+S GSLIHV W+E GP+ 
Sbjct: 596  NLERLSNGHPDHERTIMTPSDTRVLIQNGELITGIVDKRTVGSSAGSLIHVTWKESGPER 655

Query: 650  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
              + +   Q L+NYWL+QN  SIGIGD IADA TM  IN TI +AK+ V+ LI+ AQ+  
Sbjct: 656  TSQLISDIQLLINYWLMQNGMSIGIGDCIADAHTMAAINRTIQEAKDEVRQLIRLAQEGR 715

Query: 710  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
            LE +PG+TM+ESFE  VN+VLN+ARD+AG  AQ+SL  SNN+K MV+AGSKGSFIN+SQ+
Sbjct: 716  LERQPGKTMLESFEACVNRVLNSARDKAGGFAQESLLPSNNIKRMVSAGSKGSFINVSQI 775

Query: 770  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
             ACVGQQNVEGKRIP+GF  RTLPHF  DD  PE+RGFVENSYLRGLTP+E FFHAMGGR
Sbjct: 776  VACVGQQNVEGKRIPYGFRRRTLPHFVVDDLSPEARGFVENSYLRGLTPEEVFFHAMGGR 835

Query: 830  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
            EGLIDTAVKT+ETGYIQRRL+KAMEDI ++YDGTVRNSLGDV+QFLYG+D  D   +E Q
Sbjct: 836  EGLIDTAVKTAETGYIQRRLMKAMEDIRIEYDGTVRNSLGDVMQFLYGDDAADGAMLEVQ 895

Query: 890  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRY 949
             L  ++    E +  FR ++ + ++   Y+  + ID ++T  E+    + E Q+L ADR 
Sbjct: 896  ELRLVRASNQEMEALFRLDVYDRDFGLGYIEPDLIDAVRTDPEVALELEEEYQQLLADRE 955

Query: 950  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1009
            QL     T G++ WPL VN++RLI N +  F +     SD+HP ++++ V  L +R  VV
Sbjct: 956  QLCAVFPT-GEAKWPLMVNVQRLIQNCRSIFGIQHDTLSDLHPRQIIQGVRVLLQRCVVV 1014

Query: 1010 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1069
            PG+D LS EAQ+NA L F   +R+  A+KRVL+ HRL  +AF W++GEIE+RF+++   P
Sbjct: 1015 PGDDELSREAQRNAVLLFAAHVRAELATKRVLQIHRLNSKAFAWLLGEIETRFVRARATP 1074

Query: 1070 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1129
            GEM+G VAAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+INVA++ KTPS++V+L
Sbjct: 1075 GEMVGAVAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINVARQAKTPSVTVYL 1134

Query: 1130 KPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDED 1189
            K G +  KE A  VQ  LE   LR V E++ +++DPDP  T++E D E+V+ Y+++PDE 
Sbjct: 1135 KSGKD--KELANIVQSELEQCRLRDVVESSAIYFDPDPANTVVEADREWVRDYFDLPDEM 1192

Query: 1190 IAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI 1249
              PE++SPWLLRI L+ EMM+DK+L ++ VA ++  EF  DL+ +++DDNA++L++ IR+
Sbjct: 1193 DRPERLSPWLLRIVLSTEMMIDKRLRLSDVARRLRAEFGGDLSVVYSDDNAEQLVMHIRM 1252

Query: 1250 MNDEAPKGEL--------------------NDESA----------------EDDVFLKKI 1273
              DE  KG L                     D +A                +DDVFLK+I
Sbjct: 1253 AGDEYEKGALGVPILGESERLDDTLNLLGPGDMTAGGNQSLEALDSGTVEEQDDVFLKRI 1312

Query: 1274 ESNMLTEMALRGV------------------------------------NLLAVMCHEDV 1297
            E  +L +M L+G+                                     LLAV+ H DV
Sbjct: 1313 ELALLEDMQLKGIPGIRKVFLRQTQRVLFDPEAGSFRSAPEWVLDTEGTALLAVLSHPDV 1372

Query: 1298 DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLM 1357
            DARRT SN + E+++VLGIEA R+AL +E+  V+SFDGS V YRHLA+L + MT RG L+
Sbjct: 1373 DARRTISNEITEVLQVLGIEAARQALYNEMYAVLSFDGSSVGYRHLALLVEVMTCRGMLI 1432

Query: 1358 AITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCS 1417
             ++R GINR +TGP+MRC+FEETV+IL  AA F   D   GV++ ++LGQ A +GTG  S
Sbjct: 1433 PVSRFGINRLETGPLMRCTFEETVEILATAATFGVRDACEGVSQAVILGQRAKVGTGAFS 1492

Query: 1418 LYLNDEMLKNA-IELQLPSYMEGLEFGM---------------TPARSPVSGTPYHDGMM 1461
            L L++ +L  A  E  + +  +    G+               TPA +P   TP   GM 
Sbjct: 1493 LTLDESVLNQAETETSVAAVRDAHVGGVFAKAYAAADVDADHWTPAYTP-GATP---GMA 1548

Query: 1462 SPGYL---------------FSPNLRLSPVTDAQFSPYVGGMAF-----------SPTSS 1495
            S G+                FSP +  SP T    S YVGG A            SP +S
Sbjct: 1549 SDGFAAPWTPSLNLASPYGSFSPAVGFSPAT----STYVGGDAMKDAGRYGLGGTSPFAS 1604

Query: 1496 PGYSPSSPGYSPS--------SPGYSPTSPGYSPTSPGY-SPTSPGYSPTSPTYSPSSPG 1546
               S ++P ++PS           +SP+SP YSPTSP   SPTSP YSPTSP YSP+SP 
Sbjct: 1605 FSASATTPNWAPSPAGGGTGTLGAFSPSSPAYSPTSPRLVSPTSPAYSPTSPAYSPTSPA 1664

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSP--SYSPTSP--SYSPTS 1600
            YSPTSPAYSPTSP+YSPTSP+YSPTSP+YSP+SP  +YSP+SP  +YSP+SP  +YSP+S
Sbjct: 1665 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSS 1724

Query: 1601 P--SYSPTSP--AYSPTSP--AYSPTSP--AYSPTSP--SYSPTSP--SYSPTSP-SYSP 1647
            P  +YSP+SP  AYSP+SP  AYSP+SP  AYSP+SP  +YSP+SP  +YSP+SP +YSP
Sbjct: 1725 PNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSPVAYSP 1784

Query: 1648 TSP--SYSPTSPSYS 1660
            +SP  +YSP+SP+ +
Sbjct: 1785 SSPNVAYSPSSPNVA 1799



 Score =  160 bits (406), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 124/269 (46%), Positives = 163/269 (60%), Gaps = 42/269 (15%)

Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSP 1608
            +PAY+P +     +    +P +PS +  SP  S+SP +  +SP + +Y            
Sbjct: 1536 TPAYTPGATPGMASDGFAAPWTPSLNLASPYGSFSP-AVGFSPATSTYVGGDAMKDAGRY 1594

Query: 1609 AYSPTSPAYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPAY 1666
                TSP  S ++ A   T+P+++P+ +   + T  ++SP+SP+YSPTSP   SPTSPAY
Sbjct: 1595 GLGGTSPFASFSASA---TTPNWAPSPAGGGTGTLGAFSPSSPAYSPTSPRLVSPTSPAY 1651

Query: 1667 SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP-SLAYSPSSPRLSPASPYSPTSP 1725
            SPTSP YSPTSP+YSPTSP YSPTSP+Y+P S  YSP S AYSPSSP ++    YSP+SP
Sbjct: 1652 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPSSPNVA----YSPSSP 1707

Query: 1726 N--YSPTS--SSYSPTSP--SYSPSSP--TYSPSSPYNAGGGNPDYSPSSPQYSPSAGYS 1777
            N  YSP+S   +YSP+SP  +YSPSSP   YSPSSP      N  YSPSSP    +  YS
Sbjct: 1708 NVAYSPSSPNVAYSPSSPNVAYSPSSPNVAYSPSSP------NVAYSPSSP----NVAYS 1757

Query: 1778 PSAP-----------GYSPSSTSQYTPQT 1795
            PS+P            YSPSS   Y+P +
Sbjct: 1758 PSSPNVAYSPSSPNVAYSPSSPVAYSPSS 1786


>gi|336378579|gb|EGO19737.1| DNA-directed RNA polymerase II, subunit 1 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1744

 Score = 1811 bits (4692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 959/1771 (54%), Positives = 1212/1771 (68%), Gaps = 147/1771 (8%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTID 61
            +F YS A + KV+ VQFGILSP+EI+  SV +IEH E  +    KPK GGL DPR+GTID
Sbjct: 5    QFAYSAAPIRKVKEVQFGILSPEEIKAYSVAKIEHPEVMDEATHKPKLGGLMDPRMGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R  KC+TC   M+ECPGHFGH+ELA+P+FH GF+  V  I+  +C NC K+ AD  D  F
Sbjct: 65   RNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADISDPSF 124

Query: 122  KQALK-IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-----EPLKKNKGGCGAQQ 175
               ++ +R+PK R+  +   CK K  CE     D P ++GE     EP KK  GGCG QQ
Sbjct: 125  ADKIRHVRDPKARMAVVWAHCKTKMTCE----TDEPKEEGEGAENDEP-KKGHGGCGHQQ 179

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P +  EG+K+  +YK   K  DD E++      K+  T   V    K++SD D  L+GL+
Sbjct: 180  PLVRKEGLKLFVQYK---KPKDDDEEVKSLQPDKRLFTPSEVYTTFKKMSDSDLHLIGLS 236

Query: 236  PKYARPDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGA 284
             +YARP+WMIL V           + +    +R  DDLT++L  II+ + N+RR E+ GA
Sbjct: 237  DEYARPEWMILTVMPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDIIKASVNVRRCEQEGA 296

Query: 285  PAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKR 344
            PAH+I+EF QLLQFH+ATY DN++ G P+A Q+SGRP+K+I +RLK KEGR+RGNLMGKR
Sbjct: 297  PAHVITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKR 356

Query: 345  VDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTG 404
            VDFSARTVIT DP + +D++GVP SIA+NLTYPE VTPYNI  L+ELV  GP   PG   
Sbjct: 357  VDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTAYPG--- 413

Query: 405  AKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIK 464
            A+Y++RD G+R+DLRY  K +D  L+ G+ VERHL DGDFVLFNRQPSLHKMS+M HR+K
Sbjct: 414  ARYVVRDTGERIDLRY-NKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVK 472

Query: 465  IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 524
            +MPYSTFRLNLSVT PYNADFDGDEMNMHVPQS ETRAE+ ++  VP+ I+SPQ+N+PVM
Sbjct: 473  LMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVM 532

Query: 525  GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLI 584
            GIVQDTL G RK T RDTF++ +   NIL+W  D+DG VP P+I+KP+PLWTGKQ+ +++
Sbjct: 533  GIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGNVPIPSIIKPKPLWTGKQILSMV 592

Query: 585  IPKQINLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            IP+ IN+ R     + N   D G+L        IE GE++ G + KKT+G S G L+HV+
Sbjct: 593  IPRGINIHRAPEPKSSNPVFDDGML--------IENGEIVFGIVEKKTVGASQGGLVHVV 644

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E GPDA R+     Q +VN+WL  N FSIGIGDTIAD KTM  I   IS  K  V  +
Sbjct: 645  FREKGPDATRQIFTGIQMVVNFWLFHNGFSIGIGDTIADTKTMSYITQQISSQKVKVAGI 704

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
            I  A    L+  PG T+ ESFE+KV + LN ARD+ G  AQKSL E NN+K MV AGSKG
Sbjct: 705  IDDATHDRLKAAPGMTIRESFESKVQRELNLARDDCGQYAQKSLKEDNNVKQMVVAGSKG 764

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            SFINISQM+ CVGQQ+VEG+RIPFGF  RTLPHFTKDD+ PE+RGFVENSYLRGLTPQEF
Sbjct: 765  SFINISQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEF 824

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+MV YDGTVRNSLGD++QF+YGEDGM
Sbjct: 825  FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLVQFVYGEDGM 884

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDA 939
            D  +IE Q +D+  +   EF+  +R ++ +    + P  +LQ  +DD  +  EL+   D 
Sbjct: 885  DGAFIERQKIDTFALSDKEFEHNYRVDVTDPAGGFLPG-VLQVGLDD--SSLELQAKLDE 941

Query: 940  EVQKLEADRYQLATEIATSGDSSWP--LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVE 997
            E  +L  DR  L + I    D++ P  LPVNL+R++ NA + F +D R+PSD+ P  ++E
Sbjct: 942  EFTQLLEDRGVLRSFIFPRADATTPHYLPVNLQRIVQNAIQIFHIDRRKPSDLEPAYIIE 1001

Query: 998  AVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGE 1057
            ++ +L  RL VV G+D LS EAQ+NA+L F + +R+TFAS+RVL++  L REAFEWV+GE
Sbjct: 1002 SLQQLSNRLVVVRGDDSLSKEAQENASLTFRMHVRATFASRRVLEQFHLNREAFEWVLGE 1061

Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
            +E++F QSLV PGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA
Sbjct: 1062 VEAKFNQSLVNPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVA 1121

Query: 1118 KKIKTPSLSVFLKPGV--NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEED 1175
              IKTPSLSV+L+  +    +   AKNVQ  L YT+LR+VT A E+WYDPDP  TIIEED
Sbjct: 1122 TNIKTPSLSVYLESDIAEEVSGMLAKNVQQELAYTSLRTVTAAVEIWYDPDPSSTIIEED 1181

Query: 1176 VEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTC 1233
              FV+S++ +PDE+I  +    SPWLLR+EL+R  M+D+KL+M+ VA +I + F  DL  
Sbjct: 1182 SVFVESFFAIPDEEIESKLHLQSPWLLRLELDRAKMIDRKLTMSYVAGRIAESFKTDLFV 1241

Query: 1234 IFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR--------- 1284
            I+++DN++KLI+R R++     + +    S E+D+FL+++E+ ML  ++LR         
Sbjct: 1242 IWSEDNSEKLIIRCRVLGGGDKEDDDGLGSIEEDIFLRQLENTMLNSVSLRGVKDIERVF 1301

Query: 1285 --------------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEA 1318
                                      GVNL  VMC + VD RRT SN  +E+  VLGIEA
Sbjct: 1302 LLQHDKVYFNDEGSIKSKKEWVLETDGVNLKTVMCIDGVDFRRTYSNSCVEVFNVLGIEA 1361

Query: 1319 VRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE 1378
             R A++ ELR VI F+ SYVNYRHLA+LCD MT+RG LMAITRHGINR DTG +MRCSFE
Sbjct: 1362 ARAAIMKELRGVIEFESSYVNYRHLALLCDLMTHRGTLMAITRHGINRADTGALMRCSFE 1421

Query: 1379 ETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI-------EL 1431
            ETV+IL++AA   E D   G+ EN+M GQ+AP+GTG   + L+ +MLK+AI       + 
Sbjct: 1422 ETVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFEVALDIDMLKDAIVDHRLPVQN 1481

Query: 1432 QLPSYMEGLEFGMTPARSPVSGTPYHDG--MMSPGYLFSPNLRLSPVT------DAQFSP 1483
             L ++ +G   GMTP +  V+ TPY       S G     +   SP+        A FS 
Sbjct: 1482 MLAAHADG---GMTPGQ--VAMTPYDTNSPAWSEGNFKGESAAFSPLAVNGGEDPANFS- 1535

Query: 1484 YVGGMAFSPTSSPGYSPSSPGYSPSSPG-YSPTSPGYSPTSPGYSPTSP-GYSP--TSPT 1539
               G   SP  + G SP+ PGYSPSSP  YSPTSP Y P SP    TSP G SP  TSP 
Sbjct: 1536 -FLGYGQSPVGAGGMSPAGPGYSPSSPNVYSPTSP-YVPQSPFGGATSPFGTSPYATSPF 1593

Query: 1540 Y----SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1595
            Y     P+SP YSPTSPA + TSP YSPTSP YSPTSPS+SPTSP YSP SPS+SPTSP 
Sbjct: 1594 YDRARGPTSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPR 1653

Query: 1596 YSPTSPSYSPTSP----AYSPTSP--------------------AYSPTSPAYSPTSPSY 1631
            YSPTSPS+SP SP      SP+SP                     YSP SPAYSP SP+Y
Sbjct: 1654 YSPTSPSFSPASPRSPAQMSPSSPKYSPTSPTSPSSPKYSPTSPTYSPASPAYSPASPAY 1713

Query: 1632 SPTSPSYSPTSPSYSPT---SPSYSPTSPSY 1659
            SPTSP +SP+SP+ + T   S SYS TSPS+
Sbjct: 1714 SPTSPQWSPSSPAQNGTANRSHSYS-TSPSW 1743



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 125/272 (45%), Positives = 156/272 (57%), Gaps = 47/272 (17%)

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPS 1602
            +PG    +P Y   SP++S    ++   S ++SP + +      ++S      SP  +  
Sbjct: 1492 TPGQVAMTP-YDTNSPAWS--EGNFKGESAAFSPLAVNGGEDPANFSFLGYGQSPVGAGG 1548

Query: 1603 YSPTSPAYSPTSP-AYSPTSPAYSPTSPSYSPTSP-SYSP--TSPSY----SPTSPSYSP 1654
             SP  P YSP+SP  YSPTSP Y P SP    TSP   SP  TSP Y     PTSP+YSP
Sbjct: 1549 MSPAGPGYSPSSPNVYSPTSP-YVPQSPFGGATSPFGTSPYATSPFYDRARGPTSPTYSP 1607

Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP-SLAYSPSSPR 1713
            TSP+ + TSP YSPTSP YSPTSPS+SPTSP YSP SPS++P S +YSP S ++SP+SPR
Sbjct: 1608 TSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPR 1667

Query: 1714 LSPASPYSPTSPNYSPTSS-------------SYSPTSPSYSPSSPTYSPSSPYNAGGGN 1760
             SPA   SP+SP YSPTS              +YSP SP        YSP+SP       
Sbjct: 1668 -SPAQ-MSPSSPKYSPTSPTSPSSPKYSPTSPTYSPASP-------AYSPASPA------ 1712

Query: 1761 PDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYT 1792
              YSP+SPQ+SPS   SP+  G +  S S  T
Sbjct: 1713 --YSPTSPQWSPS---SPAQNGTANRSHSYST 1739



 Score =  130 bits (326), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 105/245 (42%), Positives = 133/245 (54%), Gaps = 45/245 (18%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYSP 1647
            Y   SP++S    ++   S A+SP +         +S      SP  +   SP  P YSP
Sbjct: 1501 YDTNSPAWS--EGNFKGESAAFSPLAVNGGEDPANFSFLGYGQSPVGAGGMSPAGPGYSP 1558

Query: 1648 TSPS-YSPTSPSYSPTSPAYSPTSP-GYSP--TSPSY----SPTSPTYSPTSPSYNPQSA 1699
            +SP+ YSPTSP Y P SP    TSP G SP  TSP Y     PTSPTYSPTSP+ N  S 
Sbjct: 1559 SSPNVYSPTSP-YVPQSPFGGATSPFGTSPYATSPFYDRARGPTSPTYSPTSPALNLTSP 1617

Query: 1700 KYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGG 1758
                   YSP+SPR SP SP +SPTSP YSP S S+SPTSP YSP+SP++SP+SP +   
Sbjct: 1618 ------GYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRSPA- 1670

Query: 1759 GNPDYSPSSP--------------------QYSPSA-GYSPSAPGYSPSSTSQYTPQTNR 1797
                 SPSSP                     YSP++  YSP++P YSP+S  Q++P +  
Sbjct: 1671 ---QMSPSSPKYSPTSPTSPSSPKYSPTSPTYSPASPAYSPASPAYSPTS-PQWSPSSPA 1726

Query: 1798 DDSTT 1802
             + T 
Sbjct: 1727 QNGTA 1731


>gi|392596906|gb|EIW86228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Coniophora puteana RWD-64-598 SS2]
          Length = 1746

 Score = 1811 bits (4692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 952/1752 (54%), Positives = 1208/1752 (68%), Gaps = 118/1752 (6%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTID 61
            +F YS A V +V+ VQFG+LSP+EI+  SV +IEH E  +    +PK GGL DPR+GTID
Sbjct: 5    QFAYSAAPVRRVKEVQFGVLSPEEIKAYSVAKIEHPEVMDEATHRPKLGGLMDPRMGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R  KC+TC   M+ECPGHFGH+ELA+P+FH GF+  V  I+  +C NC K+ AD  D  F
Sbjct: 65   RNFKCQTCGEGMSECPGHFGHIELARPVFHPGFINKVKKILECICVNCGKLKADISDPTF 124

Query: 122  KQALK-IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
               ++ IR+PK R   +   CK K  CE  +  +    D EEP KK  GGCG +QP++  
Sbjct: 125  ADRIRHIRDPKKRFAAVWAFCKAKNVCESDEPKEEGNDDAEEP-KKGHGGCGHKQPQVRK 183

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EG+K+   YKA +   DD E   + ++ K+  T   V    K++ D+D  L+GL+ +YAR
Sbjct: 184  EGLKLFVNYKADK---DDGEGKSQQID-KRLFTPSEVYTTFKKMVDQDLHLVGLSDEYAR 239

Query: 241  PDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            P+WMIL V           + +    +R  DDLT++L  II+ + N+RR E+ GAPAH+I
Sbjct: 240  PEWMILTVMPVPPPPVRPSIAVDGGVMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVI 299

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            +EF QLLQFH+ATY DN++ G P+A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSA
Sbjct: 300  TEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSA 359

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVIT DP + +D++GVP SIA+NLTYPE VTPYNI  L+ELV  GP   PG   A+Y++
Sbjct: 360  RTVITGDPNLQLDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTTYPG---ARYVV 416

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD G+R+DLRY  K +D  L+ G+ VERHL DGDFVLFNRQPSLHKMS+M HR+K+MPYS
Sbjct: 417  RDTGERIDLRY-NKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYS 475

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFRLNLSVT PYNADFDGDEMNMH+PQS ETRAE+ ++  VP+ I+SPQ+N+PVMGIVQD
Sbjct: 476  TFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQD 535

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL G RK T RDTF+E +   NIL+W  D+DG VP P I KP+PLWTGKQ+ +++IP+ I
Sbjct: 536  TLCGIRKFTLRDTFMEWNQVQNILLWVPDWDGNVPPPAIFKPKPLWTGKQILSMVIPRGI 595

Query: 590  NLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            N+ R A   + N   D GIL        IE GE++ G + KKT+G S G LIHV++ E G
Sbjct: 596  NIQRAAEPKSSNPVFDDGIL--------IENGEIIYGIVEKKTVGASQGGLIHVVFREKG 647

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
            P+A R      Q +VNYWL  N FSIGIGDT+A  K M  I + I   K  V  +++ A 
Sbjct: 648  PEATRDLFTGIQVVVNYWLFHNGFSIGIGDTVAGPKVMTHITNVIQGKKKLVSEIVEDAY 707

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
               L+  PG T+ ESFE+KV + LN ARDE+G  AQK+LS+ NN+K MV AGSKGS+INI
Sbjct: 708  HDRLKALPGMTIRESFESKVERELNRARDESGQYAQKNLSDDNNVKQMVVAGSKGSYINI 767

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQM+ CVGQQ+VEGKRIPFGF  RTLPHFTKDD+ PESRGFVENSYLRGLTPQEFFFHAM
Sbjct: 768  SQMSVCVGQQSVEGKRIPFGFRHRTLPHFTKDDFSPESRGFVENSYLRGLTPQEFFFHAM 827

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
             GREGLIDTAVKT+ETGYIQRRLVKA+ED+MV YDGTVRNSLGD++QF+YGEDGMD  +I
Sbjct: 828  AGREGLIDTAVKTAETGYIQRRLVKALEDVMVHYDGTVRNSLGDLLQFVYGEDGMDGAFI 887

Query: 887  ESQTLDSLKMKKSEFDKAFRFEM-DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            E Q +++  +  +EF+  +R ++ D +      +LQ  +DD  +  EL+   D E  +L 
Sbjct: 888  ERQKIETFGLSDAEFEHNYRVDVTDPQGGFLPGVLQVGLDD--SSLELQSKLDEEYNQLL 945

Query: 946  ADRYQLATEIATSGDSSWP--LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
             DR  L   +    ++  P  LPVNL R++ NA + F +D R+ SD+ P  +VEAV +L 
Sbjct: 946  EDRRLLRQFVFPKSNNLTPHYLPVNLSRILQNASQIFHIDRRKASDLEPAYIVEAVQQLA 1005

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
             RL V+ GED L+ EAQ NA+L F + +R+T AS+RVL++  L REAFEWV+GEIE++F 
Sbjct: 1006 SRLVVINGEDELTREAQLNASLTFRMHVRATLASRRVLEQFHLNREAFEWVLGEIETKFN 1065

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            QSLV PGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN A  IKTP
Sbjct: 1066 QSLVHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINTAVNIKTP 1125

Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
            SL+V+L P ++   + AKNVQ  L YT+LR+VT A E+WYDPDP  TIIEED  FV++++
Sbjct: 1126 SLTVYLDPQISRNPDSAKNVQQELAYTSLRTVTAAVEIWYDPDPSSTIIEEDQVFVEAFF 1185

Query: 1184 EMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
             +PDE++  +    SPWLLR+EL+R  M+D+KL+MA VA +I + F  DL  I+++DN+D
Sbjct: 1186 AIPDEEVESKLHLQSPWLLRLELDRAKMLDRKLTMAYVAGRIAESFKTDLFVIWSEDNSD 1245

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR----------------- 1284
            KL++R R++   A K +   ES E+D+FL+++E+ ML  ++LR                 
Sbjct: 1246 KLVIRCRVLGG-ADKDDDGMESVEEDIFLRQLETTMLNSISLRGVKGINRVFLQEQDDIY 1304

Query: 1285 ------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDE 1326
                              GVNL  VM    VD RRT SN+  E+ +VLG+EA R A++ E
Sbjct: 1305 INDEGSIATKKEWVLETDGVNLKTVMTISGVDFRRTYSNNCTEVFDVLGVEAARAAIMKE 1364

Query: 1327 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1386
            LR VI FDGSYVNYRHL++LCD MT RGHLMAITRHGINR DTG +MRCSFEETV+IL++
Sbjct: 1365 LRNVIEFDGSYVNYRHLSLLCDLMTQRGHLMAITRHGINRADTGALMRCSFEETVEILME 1424

Query: 1387 AAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI-ELQLPS---YMEGLEF 1442
            AA   E D   GV EN++ GQ+AP+GTG   + L+ +MLK+AI + +LP         + 
Sbjct: 1425 AAAVGEKDDCHGVAENVLFGQMAPMGTGAFDVALDIDMLKDAIVDHRLPVQNMLAAQADG 1484

Query: 1443 GMTPARSPVSGTPYHDGMMSPGY----------LFSPNLRLSPVTDAQFSPYVGGMAFSP 1492
            GMTP +  V+ TPY     SP +           FSP         A F+ Y+ G   SP
Sbjct: 1485 GMTPGQ--VAMTPYDTN--SPAWSEANFKGESAAFSPLAANGGEEAASFNSYL-GYGQSP 1539

Query: 1493 TSSPGYSPSSPGYSPSSP-GYSPTSPGYSPTSPGYSPTSP-GYSP--TSPTY----SPSS 1544
              +   SP+ PGYSPSSP  YSPTSP Y P SP    TSP G SP  TSP +     P+S
Sbjct: 1540 MGAGAMSPAGPGYSPSSPNAYSPTSP-YVPQSPFGGATSPFGTSPYATSPFFDRSRGPTS 1598

Query: 1545 PGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1604
            P YSPTSPA + TSP YSPTSP YSPTSPS+SPTSP YSP SPS+SPTSP YSPTSPS+S
Sbjct: 1599 PTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFS 1658

Query: 1605 PTSPAYSPTSPAYSPTSP-------------AYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
            P SP YSPT    SP SP              YSPTSP+YSP SP+YSP SP+YSPTSP 
Sbjct: 1659 PASPRYSPTPAQMSPASPRYSPTSPTSPSSPKYSPTSPTYSPASPAYSPASPAYSPTSPQ 1718

Query: 1652 YSPTSPSYSPTS 1663
            +SP+SP+ + T+
Sbjct: 1719 WSPSSPAQNGTA 1730



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 129/272 (47%), Positives = 166/272 (61%), Gaps = 29/272 (10%)

Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYS 1590
            G +P     +P    Y   SPA+S    ++   S ++SP + +    + S+ S      S
Sbjct: 1485 GMTPGQVAMTP----YDTNSPAWS--EANFKGESAAFSPLAANGGEEAASFNSYLGYGQS 1538

Query: 1591 PT-SPSYSPTSPSYSPTSP-AYSPTSPAYSPTSPAYSPTSP-SYSP--TSP----SYSPT 1641
            P  + + SP  P YSP+SP AYSPTSP Y P SP    TSP   SP  TSP    S  PT
Sbjct: 1539 PMGAGAMSPAGPGYSPSSPNAYSPTSP-YVPQSPFGGATSPFGTSPYATSPFFDRSRGPT 1597

Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY 1701
            SP+YSPTSP+ + TSP YSPTSP YSPTSP +SPTSP YSP SP++SPTSP Y+P S  +
Sbjct: 1598 SPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSF 1657

Query: 1702 SP-SLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGN 1760
            SP S  YSP+  ++SPASP    +   SP+S  YSPTSP+YSP+SP YSP+SP       
Sbjct: 1658 SPASPRYSPTPAQMSPASPRYSPTSPTSPSSPKYSPTSPTYSPASPAYSPASPA------ 1711

Query: 1761 PDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYT 1792
              YSP+SPQ+SPS   SP+  G + ++T  + 
Sbjct: 1712 --YSPTSPQWSPS---SPAQNGTANNTTRNHA 1738



 Score =  143 bits (360), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 123/282 (43%), Positives = 157/282 (55%), Gaps = 37/282 (13%)

Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYS 1604
            G +P   A +P    Y   SP++S    ++   S ++SP + +    + S+ S      S
Sbjct: 1485 GMTPGQVAMTP----YDTNSPAWS--EANFKGESAAFSPLAANGGEEAASFNSYLGYGQS 1538

Query: 1605 PT-SPAYSPTSPAYSPTSP-AYSPTSPSYSPTSPSYSPTSP-SYSP--TSPSYSPTSPSY 1659
            P  + A SP  P YSP+SP AYSPTSP Y P SP    TSP   SP  TSP +     S 
Sbjct: 1539 PMGAGAMSPAGPGYSPSSPNAYSPTSP-YVPQSPFGGATSPFGTSPYATSPFFDR---SR 1594

Query: 1660 SPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
             PTSP YSPTSP  + TSP YSPTSP YSPTSPS+             SP+SPR SP SP
Sbjct: 1595 GPTSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSF-------------SPTSPRYSPQSP 1641

Query: 1720 -YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP-----YNAGGGNPDYSPSSPQYSPS 1773
             +SPTSP YSPTS S+SP SP YSP+    SP+SP           +P YSP+SP YSP+
Sbjct: 1642 SFSPTSPRYSPTSPSFSPASPRYSPTPAQMSPASPRYSPTSPTSPSSPKYSPTSPTYSPA 1701

Query: 1774 A-GYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSS 1814
            +  YSP++P YSP+S  Q++P +   + T  +        SS
Sbjct: 1702 SPAYSPASPAYSPTS-PQWSPSSPAQNGTANNTTRNHAYSSS 1742


>gi|336364350|gb|EGN92710.1| hypothetical protein SERLA73DRAFT_98944 [Serpula lacrymans var.
            lacrymans S7.3]
          Length = 1741

 Score = 1811 bits (4691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 959/1771 (54%), Positives = 1214/1771 (68%), Gaps = 150/1771 (8%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTID 61
            +F YS A + KV+ VQFGILSP+EI+  SV +IEH E  +    KPK GGL DPR+GTID
Sbjct: 5    QFAYSAAPIRKVKEVQFGILSPEEIKAYSVAKIEHPEVMDEATHKPKLGGLMDPRMGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R  KC+TC   M+ECPGHFGH+ELA+P+FH GF+  V  I+  +C NC K+ AD  D  F
Sbjct: 65   RNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADISDPSF 124

Query: 122  KQALK-IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-----EPLKKNKGGCGAQQ 175
               ++ +R+PK R+  +   CK K  CE     D P ++GE     EP KK  GGCG QQ
Sbjct: 125  ADKIRHVRDPKARMAVVWAHCKTKMTCE----TDEPKEEGEGAENDEP-KKGHGGCGHQQ 179

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P +  EG+K+  +YK  + K+DD+   P+    K+  T   V    K++SD D  L+GL+
Sbjct: 180  PLVRKEGLKLFVQYK--KPKDDDESLQPD----KRLFTPSEVYTTFKKMSDSDLHLIGLS 233

Query: 236  PKYARPDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGA 284
             +YARP+WMIL V           + +    +R  DDLT++L  II+ + N+RR E+ GA
Sbjct: 234  DEYARPEWMILTVMPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDIIKASVNVRRCEQEGA 293

Query: 285  PAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKR 344
            PAH+I+EF QLLQFH+ATY DN++ G P+A Q+SGRP+K+I +RLK KEGR+RGNLMGKR
Sbjct: 294  PAHVITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKR 353

Query: 345  VDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTG 404
            VDFSARTVIT DP + +D++GVP SIA+NLTYPE VTPYNI  L+ELV  GP   PG   
Sbjct: 354  VDFSARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTAYPG--- 410

Query: 405  AKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIK 464
            A+Y++RD G+R+DLRY  K +D  L+ G+ VERHL DGDFVLFNRQPSLHKMS+M HR+K
Sbjct: 411  ARYVVRDTGERIDLRY-NKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVK 469

Query: 465  IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 524
            +MPYSTFRLNLSVT PYNADFDGDEMNMHVPQS ETRAE+ ++  VP+ I+SPQ+N+PVM
Sbjct: 470  LMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVM 529

Query: 525  GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLI 584
            GIVQDTL G RK T RDTF++ +   NIL+W  D+DG VP P+I+KP+PLWTGKQ+ +++
Sbjct: 530  GIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGNVPIPSIIKPKPLWTGKQILSMV 589

Query: 585  IPKQINLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            IP+ IN+ R     + N   D G+L        IE GE++ G + KKT+G S G L+HV+
Sbjct: 590  IPRGINIHRAPEPKSSNPVFDDGML--------IENGEIVFGIVEKKTVGASQGGLVHVV 641

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E GPDA R+     Q +VN+WL  N FSIGIGDTIAD KTM  I   IS  K  V  +
Sbjct: 642  FREKGPDATRQIFTGIQMVVNFWLFHNGFSIGIGDTIADTKTMSYITQQISSQKVKVAGI 701

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
            I  A    L+  PG T+ ESFE+KV + LN ARD+ G  AQKSL E NN+K MV AGSKG
Sbjct: 702  IDDATHDRLKAAPGMTIRESFESKVQRELNLARDDCGQYAQKSLKEDNNVKQMVVAGSKG 761

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            SFINISQM+ CVGQQ+VEG+RIPFGF  RTLPHFTKDD+ PE+RGFVENSYLRGLTPQEF
Sbjct: 762  SFINISQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEF 821

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+MV YDGTVRNSLGD++QF+YGEDGM
Sbjct: 822  FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLVQFVYGEDGM 881

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDA 939
            D  +IE Q +D+  +   EF+  +R ++ +    + P  +LQ  +DD  +  EL+   D 
Sbjct: 882  DGAFIERQKIDTFALSDKEFEHNYRVDVTDPAGGFLPG-VLQVGLDD--SSLELQAKLDE 938

Query: 940  EVQKLEADRYQLATEIATSGDSSWP--LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVE 997
            E  +L  DR  L + I    D++ P  LPVNL+R++ NA + F +D R+PSD+ P  ++E
Sbjct: 939  EFTQLLEDRGVLRSFIFPRADATTPHYLPVNLQRIVQNAIQIFHIDRRKPSDLEPAYIIE 998

Query: 998  AVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGE 1057
            ++ +L  RL VV G+D LS EAQ+NA+L F + +R+TFAS+RVL++  L REAFEWV+GE
Sbjct: 999  SLQQLSNRLVVVRGDDSLSKEAQENASLTFRMHVRATFASRRVLEQFHLNREAFEWVLGE 1058

Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
            +E++F QSLV PGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA
Sbjct: 1059 VEAKFNQSLVNPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVA 1118

Query: 1118 KKIKTPSLSVFLKPGV--NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEED 1175
              IKTPSLSV+L+  +    +   AKNVQ  L YT+LR+VT A E+WYDPDP  TIIEED
Sbjct: 1119 TNIKTPSLSVYLESDIAEEVSGMLAKNVQQELAYTSLRTVTAAVEIWYDPDPSSTIIEED 1178

Query: 1176 VEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTC 1233
              FV+S++ +PDE+I  +    SPWLLR+EL+R  M+D+KL+M+ VA +I + F  DL  
Sbjct: 1179 SVFVESFFAIPDEEIESKLHLQSPWLLRLELDRAKMIDRKLTMSYVAGRIAESFKTDLFV 1238

Query: 1234 IFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR--------- 1284
            I+++DN++KLI+R R++     + +    S E+D+FL+++E+ ML  ++LR         
Sbjct: 1239 IWSEDNSEKLIIRCRVLGGGDKEDDDGLGSIEEDIFLRQLENTMLNSVSLRGVKDIERVF 1298

Query: 1285 --------------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEA 1318
                                      GVNL  VMC + VD RRT SN  +E+  VLGIEA
Sbjct: 1299 LLQHDKVYFNDEGSIKSKKEWVLETDGVNLKTVMCIDGVDFRRTYSNSCVEVFNVLGIEA 1358

Query: 1319 VRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE 1378
             R A++ ELR VI F+ SYVNYRHLA+LCD MT+RG LMAITRHGINR DTG +MRCSFE
Sbjct: 1359 ARAAIMKELRGVIEFESSYVNYRHLALLCDLMTHRGTLMAITRHGINRADTGALMRCSFE 1418

Query: 1379 ETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI-------EL 1431
            ETV+IL++AA   E D   G+ EN+M GQ+AP+GTG   + L+ +MLK+AI       + 
Sbjct: 1419 ETVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFEVALDIDMLKDAIVDHRLPVQN 1478

Query: 1432 QLPSYMEGLEFGMTPARSPVSGTPYHDG--MMSPGYLFSPNLRLSPVT------DAQFSP 1483
             L ++ +G   GMTP +  V+ TPY       S G     +   SP+        A FS 
Sbjct: 1479 MLAAHADG---GMTPGQ--VAMTPYDTNSPAWSEGNFKGESAAFSPLAVNGGEDPANFS- 1532

Query: 1484 YVGGMAFSPTSSPGYSPSSPGYSPSSPG-YSPTSPGYSPTSPGYSPTSP-GYSP--TSPT 1539
               G   SP  + G SP+ PGYSPSSP  YSPTSP Y P SP    TSP G SP  TSP 
Sbjct: 1533 -FLGYGQSPVGAGGMSPAGPGYSPSSPNVYSPTSP-YVPQSPFGGATSPFGTSPYATSPF 1590

Query: 1540 Y----SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1595
            Y     P+SP YSPTSPA + TSP YSPTSP YSPTSPS+SPTSP YSP SPS+SPTSP 
Sbjct: 1591 YDRARGPTSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPR 1650

Query: 1596 YSPTSPSYSPTSP----AYSPTSP--------------------AYSPTSPAYSPTSPSY 1631
            YSPTSPS+SP SP      SP+SP                     YSP SPAYSP SP+Y
Sbjct: 1651 YSPTSPSFSPASPRSPAQMSPSSPKYSPTSPTSPSSPKYSPTSPTYSPASPAYSPASPAY 1710

Query: 1632 SPTSPSYSPTSPSYSPT---SPSYSPTSPSY 1659
            SPTSP +SP+SP+ + T   S SYS TSPS+
Sbjct: 1711 SPTSPQWSPSSPAQNGTANRSHSYS-TSPSW 1740



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 125/272 (45%), Positives = 156/272 (57%), Gaps = 47/272 (17%)

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPS 1602
            +PG    +P Y   SP++S    ++   S ++SP + +      ++S      SP  +  
Sbjct: 1489 TPGQVAMTP-YDTNSPAWS--EGNFKGESAAFSPLAVNGGEDPANFSFLGYGQSPVGAGG 1545

Query: 1603 YSPTSPAYSPTSP-AYSPTSPAYSPTSPSYSPTSP-SYSP--TSPSY----SPTSPSYSP 1654
             SP  P YSP+SP  YSPTSP Y P SP    TSP   SP  TSP Y     PTSP+YSP
Sbjct: 1546 MSPAGPGYSPSSPNVYSPTSP-YVPQSPFGGATSPFGTSPYATSPFYDRARGPTSPTYSP 1604

Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP-SLAYSPSSPR 1713
            TSP+ + TSP YSPTSP YSPTSPS+SPTSP YSP SPS++P S +YSP S ++SP+SPR
Sbjct: 1605 TSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPR 1664

Query: 1714 LSPASPYSPTSPNYSPTSS-------------SYSPTSPSYSPSSPTYSPSSPYNAGGGN 1760
             SPA   SP+SP YSPTS              +YSP SP        YSP+SP       
Sbjct: 1665 -SPAQ-MSPSSPKYSPTSPTSPSSPKYSPTSPTYSPASP-------AYSPASPA------ 1709

Query: 1761 PDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYT 1792
              YSP+SPQ+SPS   SP+  G +  S S  T
Sbjct: 1710 --YSPTSPQWSPS---SPAQNGTANRSHSYST 1736



 Score =  130 bits (326), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 105/245 (42%), Positives = 133/245 (54%), Gaps = 45/245 (18%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYSP 1647
            Y   SP++S    ++   S A+SP +         +S      SP  +   SP  P YSP
Sbjct: 1498 YDTNSPAWS--EGNFKGESAAFSPLAVNGGEDPANFSFLGYGQSPVGAGGMSPAGPGYSP 1555

Query: 1648 TSPS-YSPTSPSYSPTSPAYSPTSP-GYSP--TSPSY----SPTSPTYSPTSPSYNPQSA 1699
            +SP+ YSPTSP Y P SP    TSP G SP  TSP Y     PTSPTYSPTSP+ N  S 
Sbjct: 1556 SSPNVYSPTSP-YVPQSPFGGATSPFGTSPYATSPFYDRARGPTSPTYSPTSPALNLTSP 1614

Query: 1700 KYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGG 1758
                   YSP+SPR SP SP +SPTSP YSP S S+SPTSP YSP+SP++SP+SP +   
Sbjct: 1615 ------GYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRSPA- 1667

Query: 1759 GNPDYSPSSP--------------------QYSPSA-GYSPSAPGYSPSSTSQYTPQTNR 1797
                 SPSSP                     YSP++  YSP++P YSP+S  Q++P +  
Sbjct: 1668 ---QMSPSSPKYSPTSPTSPSSPKYSPTSPTYSPASPAYSPASPAYSPTS-PQWSPSSPA 1723

Query: 1798 DDSTT 1802
             + T 
Sbjct: 1724 QNGTA 1728


>gi|449550549|gb|EMD41513.1| hypothetical protein CERSUDRAFT_110068 [Ceriporiopsis subvermispora
            B]
          Length = 1749

 Score = 1810 bits (4688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 954/1770 (53%), Positives = 1206/1770 (68%), Gaps = 133/1770 (7%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLGTID 61
            +F YS A + KV+ VQFGILSP+EI+  SV +IEH E  +    KPK GGL DPR+GTID
Sbjct: 5    QFAYSAAPIRKVKEVQFGILSPEEIKAYSVAKIEHPEVMDETTHKPKLGGLMDPRMGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R  KC+TC   M+ECPGHFGH+ELA+P+FH GF+  V  I+  +C NC K+ AD  D  F
Sbjct: 65   RNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADSSDVNF 124

Query: 122  KQALK-IRNPKNRLKKILDACKNKTKCEGG---DEIDVPGQDGEEPLKKNKGGCGAQQPK 177
               ++ IR+PK R++ + + CK K  CE     DE D  G + +EP KK  GGCGA QP 
Sbjct: 125  ADRIRHIRDPKARMQAVWNFCKTKMVCEPDEPKDEHD--GMENDEP-KKGHGGCGAAQPL 181

Query: 178  LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
            +  EG+K+  +YK   +  D+ E++      K+      V   LK+ISD D  LLGL+ +
Sbjct: 182  VRKEGLKLFVQYK---RSKDEDEEVKSLQPDKRLFPPHEVYTALKKISDTDLHLLGLSDE 238

Query: 238  YARPDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
            YARP+WMIL V           + +    +R  DDLT++L  II+ + N+RR E+ GAPA
Sbjct: 239  YARPEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDIIKASANVRRCEQEGAPA 298

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            H+I+EF QLLQFH+ATY DN++ G P+A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVD
Sbjct: 299  HVITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVD 358

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP +++D++GVP SIA+NLT+PE VTPYNI  L+ELV  GP   PG   A+
Sbjct: 359  FSARTVITGDPNLDLDEVGVPRSIAMNLTFPERVTPYNIAYLQELVRNGPTTYPG---AR 415

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            Y++RD G+R+DLRY  K +D  L+ G+ VERHL DGDFVLFNRQPSLHKMS+M HR+K+M
Sbjct: 416  YVVRDTGERIDLRY-NKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLM 474

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            PYSTFRLNLSVT PYNADFDGDEMNMHVPQS ETRAE+ ++  VP+ I+SPQ+N+PVMGI
Sbjct: 475  PYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGI 534

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDTL G RK T RDTF++     NIL+W  D+DG VP P ++KP+PLWTGKQ+ +++IP
Sbjct: 535  VQDTLCGIRKFTLRDTFLDWSQVQNILLWVPDWDGSVPTPAVIKPKPLWTGKQILSMVIP 594

Query: 587  KQINLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            + IN+ R+    + N   D G++        IE GE++ G + KKT+G S G LIHV++ 
Sbjct: 595  RGINIHRSPDPKSPNPVFDDGMM--------IENGEIIFGIVEKKTVGASQGGLIHVVFR 646

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
            E GP+A R   G  Q +VNYWL  N FSIGIGDTIAD  TM+ I + I   K NV   I 
Sbjct: 647  EKGPEACRTLFGGIQTVVNYWLFHNGFSIGIGDTIADRPTMDHIKEQIQTRKQNVAQTID 706

Query: 704  QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
             A    L+  PG T+ ESFE+KV + LN ARD++G  AQKSL E NN+K MV AGSKGSF
Sbjct: 707  DATHDRLKAAPGMTIRESFESKVERELNLARDQSGQYAQKSLKEDNNVKQMVVAGSKGSF 766

Query: 764  INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
            INISQM+ CVGQQ VEG+RIPFGF  R+LPHFTKDD+ PESRGFVENSYLRGLTP EFFF
Sbjct: 767  INISQMSVCVGQQIVEGRRIPFGFRHRSLPHFTKDDFSPESRGFVENSYLRGLTPHEFFF 826

Query: 824  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
            HAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+MV YDGTVRNSLGD+IQF+YGEDGMD 
Sbjct: 827  HAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMDG 886

Query: 884  VWIESQTLDSLKMKKSEFDKAFRFEM-DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQ 942
             +IE Q +++  +   EF+  +R ++ D +      +LQ  +DD  +  EL+   D E  
Sbjct: 887  AFIERQHIETYALNDREFEHDYRVDVTDPQGGFLPGVLQVGLDD--SSLELQAKLDEEFA 944

Query: 943  KLEADRYQLATEIATSGDSSWP--LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            +L  DR  L   +    D S P  LPVNL+R++ NA + F +D R+PSD+ P  +++AV 
Sbjct: 945  QLSEDRRLLRQFVFRRQDPSSPHYLPVNLQRIVQNAIQIFHIDRRKPSDLEPAYIIDAVR 1004

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L  RL VV G+  L  EAQ NAT+ F I +R+TFA++RVL+++ L REAFEWV+GEIE+
Sbjct: 1005 DLTHRLLVVRGDSALGREAQDNATMLFRIHIRATFATRRVLEKYHLNREAFEWVLGEIEA 1064

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            +F QSL  PGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA  I
Sbjct: 1065 KFNQSLAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNI 1124

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            KTPSLSV+L+P +      AKNVQ  L +T+LR+VT A E+WYDPDP  TIIEED  FV+
Sbjct: 1125 KTPSLSVYLEPQIAKDAVLAKNVQQELAFTSLRTVTAAVEIWYDPDPQSTIIEEDALFVE 1184

Query: 1181 SYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDD 1238
            S++ +PDE++  +    SPWLLR+EL+R  M+D+KL+M  VA +I + F  DL  I+++D
Sbjct: 1185 SFFAIPDEEVEAKLHLQSPWLLRLELDRAKMIDRKLTMPYVAGRIAESFKTDLFVIWSED 1244

Query: 1239 NADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------- 1284
            N++KLI+R R++   A K E   ++ E+D+FL+++E+ ML+ ++LR              
Sbjct: 1245 NSEKLIIRCRVLGG-ADKDEDGMDTVEEDIFLRQLENTMLSSISLRGVPGIERVFLLEHD 1303

Query: 1285 -----------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                   GVNL AVMC + VD +RT SN  +EI  VLGIEA R 
Sbjct: 1304 KIIITKEGSIEARQEKEWILETDGVNLKAVMCIDGVDFKRTYSNSCVEIFNVLGIEAARA 1363

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            A++ ELR VI FDGSYVNYRHLA+LCD MT+RG LMAITRHGINR DTG +MRCSFEETV
Sbjct: 1364 AIMKELRGVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRADTGALMRCSFEETV 1423

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI---ELQLPSYME 1438
            +IL++AA   E D   G+ EN+M GQ+AP+GTG   + L+ +MLK+ I    L + S + 
Sbjct: 1424 EILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFEVALDIDMLKDVIVDHRLPVQSMLA 1483

Query: 1439 G-LEFGMTPARSPVSGTPYHDG---------MMSPGYLFSPNLRLSPVTDAQFSPYVGGM 1488
               + GMTP +  V+ TPY                   FSP L ++   D      + G 
Sbjct: 1484 AQADGGMTPGQ--VAMTPYDSNSPMWNQDASFKGEAAAFSP-LAVNGGDDPNQWRSITGY 1540

Query: 1489 AFSPTSSPGYSPSSPGYSPSSPG-YSPTSPGYSPTSPGYSPTSP-GYSP--TSPTY---- 1540
              SP  + G SP++ GYSPSSP  YSPTSP Y P SP    TSP G SP  TSP Y    
Sbjct: 1541 GMSPMGAGGMSPAAAGYSPSSPNVYSPTSP-YVPASPFGGATSPFGTSPYATSPFYDRTR 1599

Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
             P+SP YSPTSPA + TSP YSPTSP YSPTSPS+SPTSP YSP SPS+SPTSP YSPTS
Sbjct: 1600 GPTSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTS 1659

Query: 1601 PSYSPTSP----AYSPTSP--------------------AYSPTSPAYSPTSPSYSPTSP 1636
            PS+SP SP      SP SP                    AYSP SPAYSP SP+YSPTSP
Sbjct: 1660 PSFSPASPRSPAQMSPASPRYSPTSPASPSSPKYSPTSPAYSPASPAYSPASPAYSPTSP 1719

Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1666
             +SP+SP+ +      +    SYS TSP++
Sbjct: 1720 QWSPSSPAQTQQQNGSASRQHSYS-TSPSW 1748



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 121/287 (42%), Positives = 153/287 (53%), Gaps = 66/287 (22%)

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPT-SP 1601
            +PG    +P Y   SP ++  + S+   + ++SP + +       + S T    SP  + 
Sbjct: 1491 TPGQVAMTP-YDSNSPMWNQDA-SFKGEAAAFSPLAVNGGDDPNQWRSITGYGMSPMGAG 1548

Query: 1602 SYSPTSPAYSPTSP-AYSPTSPAYSPTSPSYSPTSP-SYSP--TSPSYSPTSPSYSPTSP 1657
              SP +  YSP+SP  YSPTSP Y P SP    TSP   SP  TSP Y  T     PTSP
Sbjct: 1549 GMSPAAAGYSPSSPNVYSPTSP-YVPASPFGGATSPFGTSPYATSPFYDRTR---GPTSP 1604

Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
            +YSPTSPA + TSPGYSPTSP YSPTSP++SPTSP Y+PQ    SPS  +SP+SPR    
Sbjct: 1605 TYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQ----SPS--FSPTSPR---- 1654

Query: 1718 SPYSPTSPNYSPTS----SSYSPTSP--------------------SYSPSSPTYSPSSP 1753
              YSPTSP++SP S    +  SP SP                    +YSP+SP YSP+SP
Sbjct: 1655 --YSPTSPSFSPASPRSPAQMSPASPRYSPTSPASPSSPKYSPTSPAYSPASPAYSPASP 1712

Query: 1754 YNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDS 1800
                     YSP+SPQ+SPS          SP+ T Q     +R  S
Sbjct: 1713 A--------YSPTSPQWSPS----------SPAQTQQQNGSASRQHS 1741


>gi|68473217|ref|XP_719414.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
 gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
          Length = 1728

 Score = 1809 bits (4685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 967/1763 (54%), Positives = 1213/1763 (68%), Gaps = 146/1763 (8%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLG 58
            M  +FPYS A +  V+ VQFG+LSP+E+R +SV +IE+ ET ++   +P+ GGL+DPRLG
Sbjct: 1    MSRQFPYSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLG 60

Query: 59   TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
            +IDR  +C+TC  +MAECPGHFGH+ELAKP+FHIGF+  +     SVC +C K+L DE +
Sbjct: 61   SIDRNFRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETN 120

Query: 119  HKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKL 178
                QA+KIR+PK R   +   CK K  CE  +  D      E   + ++GGCG  QP +
Sbjct: 121  PAMAQAIKIRDPKKRFNAVWSLCKTKMVCETDNNED------EMTDQPSRGGCGHPQPTI 174

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              +G+K+   +K Q K  DD +Q PE    ++ LT   +L V K IS EDC  +G N  Y
Sbjct: 175  RRDGLKLWGTWK-QNKNYDDNDQ-PE----RRLLTPSEILNVFKHISPEDCYKMGFNEDY 228

Query: 239  ARPDWMILQVLPIPP----------PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARP+WM++ VLP+PP             R  DDLT +LA II+ N N++R E +G+P H+
Sbjct: 229  ARPEWMLITVLPVPPPPVRPSIAFNETARGEDDLTFKLADIIKANINVQRLETDGSPQHV 288

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ISEF  LLQFH+ATY DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFS
Sbjct: 289  ISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFS 348

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVI+ DP +++DQ+GVP SIA  LTYPE VTPYNI +L ELV  GP+  PG   AKY+
Sbjct: 349  ARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPG---AKYV 405

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IRD G R+DLRY K++ D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+++MPY
Sbjct: 406  IRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPY 465

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSVTSPYNADFDGDEMN+HVPQS ETR+E+ ++  VP  IVSPQSN+PVMGIVQ
Sbjct: 466  STFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQ 525

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL G RK+T RD FIE D  MN+  W  ++DG +P P ++KP+ LWTGKQ+ +L IPK 
Sbjct: 526  DTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAVVKPKQLWTGKQLLSLAIPKG 585

Query: 589  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            I+L R      D  + +L+  DT + I  GE++ G + KKT+G + G LIH +  E GP 
Sbjct: 586  IHLQR-----FDGGRDLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPK 640

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
               +     Q +VNYWLL N FSIGIGDTIADA+TM  +N TI +AK  V+ +I  AQ  
Sbjct: 641  VCAELFSSIQKVVNYWLLHNGFSIGIGDTIADAQTMRDVNKTIQEAKQKVQEIIIDAQHN 700

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             LEPEPG T+ ESFE+ V++VLN ARD AG SA+ SL + NN+K MVT+GSKGSFINISQ
Sbjct: 701  KLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQ 760

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            M+ACVGQQ VEGKRIPFGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM G
Sbjct: 761  MSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAG 820

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E 
Sbjct: 821  REGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEK 880

Query: 889  QTLDSLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
            Q++D++      F++ ++ + +D EN     +L E   +++   +L+ + D E  +L  D
Sbjct: 881  QSVDTIPGSDESFERRYKIDVLDTENVISESLL-ESGKEIRGDVQLQKILDEEYNQLLKD 939

Query: 948  RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1007
            R  L      +GD SWPLPVNL+R+I NAQ+ F     R SD+   E+V  V +L  +L 
Sbjct: 940  RKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEEIVLGVKELCMKLL 999

Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            VV G+ PL  EAQ+NATL F  LLRS  A++RV++E +L R +FEWV+GEIE++F +S+V
Sbjct: 1000 VVRGDTPLVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRASFEWVMGEIETQFQKSIV 1059

Query: 1068 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1127
             PGEM+G VAAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTP+++V
Sbjct: 1060 HPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAMTV 1119

Query: 1128 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1187
            FL P V S  E+AK VQ A+E+TTL++VT +TE++YDPDP  T+IE+D + V++Y+ +PD
Sbjct: 1120 FLDPEVASDIEKAKIVQSAIEHTTLKNVTSSTEIYYDPDPRTTVIEDDYDTVEAYFAIPD 1179

Query: 1188 EDI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            + +  + +K SPWLLR+EL+R  M+DK+L+MA VAEKI+Q F +DL  I++DD ADKLI+
Sbjct: 1180 QKVEESIDKQSPWLLRLELDRAKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLII 1239

Query: 1246 RIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG-------------------- 1285
            R R++ D  PK    D  AE+D  LK+IE++ML  ++LRG                    
Sbjct: 1240 RCRVVRD--PKSLDEDADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVSHPDET 1297

Query: 1286 ---------------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
                           VNL  VM    VD+ RT SN  IE++ VLGIEA R +L  E+  V
Sbjct: 1298 GEFKQGKEWVLETDGVNLADVMAVPGVDSTRTYSNDFIEVLSVLGIEATRSSLYKEILNV 1357

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            I+FDGSYVNYRH+A+L D MT RGHLMAITRHGINR+DTG +MRCSFEETV+ILLDAA  
Sbjct: 1358 IAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAAA 1417

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSP 1450
            AE D  +G++EN+MLGQ+AP+GTG   L ++D ML+ A     PS M      M      
Sbjct: 1418 AELDDCKGISENVMLGQMAPLGTGSFDLMVDDRMLQKA-----PSSM-----AMDDIADG 1467

Query: 1451 VSGTPYHD--GMMSPGYLFSPNLRLSPVTDAQFSP-YVGGMAFSPTSSPGYSPSSPGY-S 1506
               TPY D                 SP+  AQ +   +GG+     +S G  P+SP   S
Sbjct: 1468 GGATPYKDYENARDENIDIDAGAGFSPIHIAQMNEGNIGGL-----TSYGGQPTSPAATS 1522

Query: 1507 PSSPGY-SPTSPGYSPTSPGYSPTSPGY---------SPTSPTYSPSSPGYSPTSPAYSP 1556
            P S GY S TSPGY  TSPGY  +             +PTSP YSP+SP Y+PTSPAYSP
Sbjct: 1523 PFSYGYNSITSPGY--TSPGYGYSPTSPSYSPTSPSYAPTSPAYSPTSPSYAPTSPAYSP 1580

Query: 1557 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS---------------------------- 1588
            TSPSY+PTSP+YSPTSP+YSPTSPSYSPTSP                             
Sbjct: 1581 TSPSYAPTSPAYSPTSPAYSPTSPSYSPTSPQYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1640

Query: 1589 --------------YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT 1634
                          YSPTSP YSPTSPSYSPTSP YSPTSP+YSPTSP YSPTSP YSPT
Sbjct: 1641 YSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPQYSPT 1700

Query: 1635 SPSYSPTSPSYSPTSPSYSPTSP 1657
            SP YSPTSP YSP SP Y P  P
Sbjct: 1701 SPQYSPTSPQYSPGSPGYEPEPP 1723



 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 116/236 (49%), Positives = 128/236 (54%), Gaps = 81/236 (34%)

Query: 1578 TSPSYSPTSPSY-SPTSPSY-SPTSPSYSPTSPAYSPTSPAY---------SPTSPAYSP 1626
            TS    PTSP+  SP S  Y S TSP Y  TSP Y  +  +          +PTSPAYSP
Sbjct: 1509 TSYGGQPTSPAATSPFSYGYNSITSPGY--TSPGYGYSPTSPSYSPTSPSYAPTSPAYSP 1566

Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG-------------- 1672
            TSPSY+PTSP+YSPTSPSY+PTSP+YSPTSP+YSPTSP+YSPTSP               
Sbjct: 1567 TSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPAYSPTSPSYSPTSPQYSPTSPSYSPTSPS 1626

Query: 1673 -----------------------------------YSPTSPSYSPTSPTYSPTSPSYNPQ 1697
                                               YSPTSPSYSPTSP YSPTSPSY   
Sbjct: 1627 YSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSPSY--- 1683

Query: 1698 SAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
                      SP+SP+      YSPTSP YSPTS  YSPTSP YSP SP Y P  P
Sbjct: 1684 ----------SPTSPQ------YSPTSPQYSPTSPQYSPTSPQYSPGSPGYEPEPP 1723



 Score =  141 bits (355), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 109/221 (49%), Positives = 129/221 (58%), Gaps = 50/221 (22%)

Query: 1606 TSPAYSPTSPAY-SPTSPAY-SPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYSP 1661
            TS    PTSPA  SP S  Y S TSP Y  TSP Y  +  S S +  S   +PTSP+YSP
Sbjct: 1509 TSYGGQPTSPAATSPFSYGYNSITSPGY--TSPGYGYSPTSPSYSPTSPSYAPTSPAYSP 1566

Query: 1662 TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS 1721
            TSP+Y+PTSP YSPTSPSY+PTSP YSPTSP+Y+P S    PS  YSP+SP+ SP SP  
Sbjct: 1567 TSPSYAPTSPAYSPTSPSYAPTSPAYSPTSPAYSPTS----PS--YSPTSPQYSPTSPSY 1620

Query: 1722 PTSP------------------------------------NYSPTSSSYSPTSPSYSPSS 1745
              +                                      YSPTS SYSPTSP YSP+S
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTS 1680

Query: 1746 PTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSP 1785
            P+YSP+SP      +P YSP+SPQYSP++  YSP +PGY P
Sbjct: 1681 PSYSPTSP-QYSPTSPQYSPTSPQYSPTSPQYSPGSPGYEP 1720



 Score =  126 bits (317), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/229 (47%), Positives = 125/229 (54%), Gaps = 72/229 (31%)

Query: 1613 TSPAYSPTSPAY-SPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPAYSP 1668
            TS    PTSPA  SP S  Y S TSP Y  TSP Y  +  S S +  S   +PTSPAYSP
Sbjct: 1509 TSYGGQPTSPAATSPFSYGYNSITSPGY--TSPGYGYSPTSPSYSPTSPSYAPTSPAYSP 1566

Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNY 1727
            TSP Y+PTSP+YSPTSP+Y+PTSP             AYSP+SP  SP SP YSPTSP Y
Sbjct: 1567 TSPSYAPTSPAYSPTSPSYAPTSP-------------AYSPTSPAYSPTSPSYSPTSPQY 1613

Query: 1728 SPTSS------------------------------------------SYSPTSPSYSPSS 1745
            SPTS                                            YSPTSPSYSP+S
Sbjct: 1614 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPQYSPTSPSYSPTS 1673

Query: 1746 PTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTP 1793
            P YSP+SP         YSP+SPQYSP++  YSP++P YSP+S  QY+P
Sbjct: 1674 PQYSPTSP--------SYSPTSPQYSPTSPQYSPTSPQYSPTS-PQYSP 1713


>gi|348523738|ref|XP_003449380.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Oreochromis niloticus]
          Length = 1966

 Score = 1806 bits (4678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 920/1626 (56%), Positives = 1165/1626 (71%), Gaps = 116/1626 (7%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFGI+SPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 16   IKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 75

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+  ++ ++R VCF CSK+L D ++ K K  L      P
Sbjct: 76   MTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 135

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            + RL  + + CK K  CEGG+E+D    +  Q+ EE L K KG  GCG  QP++   G++
Sbjct: 136  RKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDLTKEKGHGGCGRYQPRIKRSGLE 195

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+  +LG++PK+ARP+WM
Sbjct: 196  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEEDIILGMDPKFARPEWM 246

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E++GA AH+I+E  +
Sbjct: 247  IVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVK 306

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KSI  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 307  LLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVIT 366

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP + IDQ+GVP SIA N+T+PE VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 367  PDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 423

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL++GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 424  RIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 483

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 484  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 543

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  IN+ RT
Sbjct: 544  RKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINVIRT 603

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 604  HSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 663

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q +VN WLL    SIGIGD+IADAKT   I +TI KAK +V  +I++A +  L
Sbjct: 664  RLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNEL 723

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV AGSKGS INISQ+ 
Sbjct: 724  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVI 783

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 784  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 843

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYDGTVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 844  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVEFQN 903

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L ++K     F+K F+F+   E      + ++ + D+ T   ++   + E  K++ DR +
Sbjct: 904  LATVKPSHKAFEKKFKFDCTNERALRRTLQEDVVKDVMTNAHVQGTLEREFDKMKEDR-E 962

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            +   I  +GDS   LP NL R+IWNAQK F+++PR P+D+HP+ VVE V  L  +L +V 
Sbjct: 963  ILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLHPLRVVEGVHDLSRKLVIVN 1022

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  SKR+ +E RL+ EAF+W++GEIE++F QS+  PG
Sbjct: 1023 GDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPG 1082

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTPSL+VFL 
Sbjct: 1083 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLL 1142

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1143 GQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDFDV 1202

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
               +ISPWLLRIEL+R+ M D+KL+M  +AEKIN  F +DL CIFNDDNA+KL+LRIRIM
Sbjct: 1203 T--RISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGEDLNCIFNDDNAEKLVLRIRIM 1260

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K + ++E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1261 NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1320

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1321 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1380

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHGINR DTGP+M+CSFEETVD+L++A
Sbjct: 1381 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA 1440

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYM----EGLE 1441
            +   E D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1441 SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF 1500

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+SG     TP++ G  +P Y        SP   +  +P  GG  FSP+++ 
Sbjct: 1501 FGTVP--SPMSGMSPAMTPWNTG-ATPAY-----GAWSPSVGSGMTP--GGAGFSPSAAS 1550

Query: 1497 GYSPSSPGYSPS---SPGYSPTSPGYSPTSPGYSPT-----SPGYSPTSPTYSPSSP-GY 1547
              S  SPGYSP+   +PG SP SPG  P SP Y P+     SP YSPTSP Y P SP GY
Sbjct: 1551 DASGFSPGYSPAWSPTPG-SPGSPG--PASP-YIPSPGGAMSPNYSPTSPAYEPRSPGGY 1606

Query: 1548 SPTSPA 1553
            +P SP 
Sbjct: 1607 TPQSPG 1612



 Score =  174 bits (440), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 85/104 (81%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP YSPTSP+Y+PTSP YSPT
Sbjct: 1851 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1910

Query: 1642 SPSYSPTSPSYSPTSPSYSPTSP---AYSPTSPGYSPTSPSYSP 1682
            SP+YSPTSP YSPTSP+YSPTSP    YSPTSPGYSPTSP+YSP
Sbjct: 1911 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1954



 Score =  172 bits (436), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 93/104 (89%), Gaps = 3/104 (2%)

Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1851 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1910

Query: 1614 SPAYSPTSPAYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YSP
Sbjct: 1911 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1954



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1851 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1910

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSP 1647
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YSP
Sbjct: 1911 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1954



 Score =  170 bits (431), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 83/104 (79%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1592
            Y+PTSP YSP+SP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1851 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1910

Query: 1593 SPSYSPTSPSYSPTSPAYSPTSP---AYSPTSPAYSPTSPSYSP 1633
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSP+YSP
Sbjct: 1911 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1954



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/104 (79%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1655
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1851 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1910

Query: 1656 SPSYSPTSPAYSPTSPGYSPTSP---SYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+Y+P
Sbjct: 1911 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1954



 Score =  169 bits (428), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/104 (79%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1851 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1910

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSP 1619
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YSP
Sbjct: 1911 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1954



 Score =  167 bits (423), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 82/107 (76%), Positives = 93/107 (86%), Gaps = 3/107 (2%)

Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1851 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1910

Query: 1663 SPAYSPTSPGYSPTSPSYSPTSP---TYSPTSPSYNPQSAKYSPSLA 1706
            SP YSPTSP YSPTSP+YSPTSP   TYSPTSP Y+P S  YSP+++
Sbjct: 1911 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAIS 1957



 Score =  166 bits (420), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/104 (78%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1498 YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT 1557
            Y+P+SP YSP+SP YSPTSP YSPTSP YSPT+P YSPTSPTYSP+SP Y+PTSP YSPT
Sbjct: 1851 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1910

Query: 1558 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1598
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YSP
Sbjct: 1911 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1954



 Score =  159 bits (403), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/120 (69%), Positives = 93/120 (77%), Gaps = 16/120 (13%)

Query: 1617 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1851 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1910

Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSP 1736
            SP+YSPTSP YSPTSP+Y             SP+SP+    S YSPTSP YSPTS +YSP
Sbjct: 1911 SPTYSPTSPKYSPTSPTY-------------SPTSPK---GSTYSPTSPGYSPTSPTYSP 1954



 Score =  159 bits (402), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/105 (77%), Positives = 91/105 (86%), Gaps = 4/105 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSPTY+P+SP YSP
Sbjct: 1851 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSP 1909

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1591
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YSP
Sbjct: 1910 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1954


>gi|409193803|gb|AFV31135.1| RNA polymerase II largest subunit [Amoeboaphelidium protococcarum]
          Length = 1767

 Score = 1805 bits (4675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 945/1771 (53%), Positives = 1219/1771 (68%), Gaps = 149/1771 (8%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCE 67
            S A   +V+ +QFG+LSP+EI+  SV +++  ET E G+PK GGL DPR+GT+DR +KC 
Sbjct: 4    SSAPQRRVKQLQFGLLSPEEIKAWSVCRVDFPETYENGRPKLGGLLDPRMGTVDRNLKCL 63

Query: 68   TCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKI 127
            TC  +M +C GHFGH+EL + +FHIGFM  +  I+  VC +C+K+  D D+ +F Q   I
Sbjct: 64   TCQESMNDCVGHFGHVELQRAVFHIGFMARIKKILECVCHSCAKLKVDTDNPRFLQTQFI 123

Query: 128  RNPKNRLKKILDACKNKTKCEGGDEIDVPGQ-----DGEEPLK---KNKGGCGAQQPKLT 179
            ++P  RL+ + + CK K  CEG   I+  GQ     D  + +    + + GCGA QP   
Sbjct: 124  KDPSKRLRAVWELCKGKQMCEGS-VIEASGQKAATADDSQNVSSSSQKRSGCGAVQPSYK 182

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVE-RKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
             EG+K +A +K        Q+Q  E  E  K      +V  + KRISD+DC+ LGL+P++
Sbjct: 183  KEGLKFVATFK-------QQQQFEESAEPNKDIFNGHKVYNIFKRISDDDCRRLGLDPEW 235

Query: 239  ARPDWMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARPDWM++ VLP+PPPPV          R  DDLT++LA II+ N+NL+    + +PAHI
Sbjct: 236  ARPDWMLISVLPVPPPPVRPSIQVDGASRGEDDLTYKLADIIKANQNLKNHV-DDSPAHI 294

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            I+E+  LLQ+H+ TY +N++ G P+ATQ+SGRPIKSI +RLK KEGR+RGNLMGKRVDFS
Sbjct: 295  IAEYEALLQYHVVTYMNNDVSGIPQATQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFS 354

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVIT DP I++D++GVP +IA  LT+PE VTP+N ++L+E V+ GP+  PG   A+Y+
Sbjct: 355  ARTVITGDPNISLDEVGVPRTIAKTLTFPEIVTPFNFQQLQEAVDNGPNEHPG---ARYV 411

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IR +G R+DL     + +  L +G KVERH+ DGD VLFNRQPSLHKMS+MGHR+++MPY
Sbjct: 412  IRQNGDRIDLSR-AGAIELQLNVGDKVERHIRDGDIVLFNRQPSLHKMSMMGHRVRVMPY 470

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSVTSPYNADFDGDEMN+HVPQS+ET+AE+ E+ MVP+ IVSPQ+NRPVMGIVQ
Sbjct: 471  STFRLNLSVTSPYNADFDGDEMNLHVPQSYETKAELSEICMVPRQIVSPQANRPVMGIVQ 530

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL G RK TKRD+F+ K++ M++ MW  D+DG++PQP I+KP PLWTGKQ+F+LIIP  
Sbjct: 531  DTLCGVRKFTKRDSFLTKEMVMSLCMWVRDWDGQLPQPAIIKPVPLWTGKQIFSLIIPPG 590

Query: 589  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
             N+    + H DN+   ++ GDT V I  GEL+ G +CKKT+GTS  SLIHVIW+E GP+
Sbjct: 591  TNMIGYHSQHPDNESSDISPGDTKVVIYDGELVCGIICKKTVGTSQNSLIHVIWKEHGPE 650

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
              R F    Q +VN WL    FSIGIGDTIADA+TM+ +  TIS AKN V   I QA   
Sbjct: 651  KTRNFFDGCQAVVNNWLFSYGFSIGIGDTIADAQTMQVVATTISNAKNKVTEYISQAHRN 710

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             L+P PG T+ ESFE++VNQ LN ARD AG+SAQKSL+++NN+K MV AGSKGSFINISQ
Sbjct: 711  VLQPSPGMTIQESFESRVNQELNRARDIAGASAQKSLNDANNVKQMVVAGSKGSFINISQ 770

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            MTACVGQQNVEG+RIPFGF  RTLPHFTKDD  PESRGFVENSYLRGLTP E FFHAMGG
Sbjct: 771  MTACVGQQNVEGRRIPFGFKYRTLPHFTKDDQSPESRGFVENSYLRGLTPSELFFHAMGG 830

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRLVKA+ED+ V YD +VRN+LG V+QF YGEDGMD   +E 
Sbjct: 831  REGLIDTAVKTAETGYIQRRLVKALEDVSVGYDCSVRNALGQVLQFAYGEDGMDGTSMER 890

Query: 889  QTLDSLKMKKSEFDKAFRFEMDEENW--NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            QTLDSL++ + +F   ++ ++ +  +  +P  +  E + ++    E++ + D E ++L  
Sbjct: 891  QTLDSLRLNEDKFKMKYKIDVSDSKYQLSPKTVKPEILQEMVQTPEIQLLLDEEFEQLSR 950

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L   I   GD+ WPLPVN+ RLIWNAQ  FKV     SD+ P ++V +V +L  ++
Sbjct: 951  DRALLRDHIFRKGDNQWPLPVNISRLIWNAQCIFKVKKNERSDLRPADIVRSVQELASKI 1010

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             ++  +D  + E ++NA+L F ILLRS  A+KR+L+E  LT+ AF W++GEIES+F QS+
Sbjct: 1011 NIINTQDKCTAELKENASLLFRILLRSVLATKRILQEFHLTKAAFSWILGEIESKFHQSM 1070

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
            VAP EM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA+  KTPS +
Sbjct: 1071 VAPNEMVGTIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVARNNKTPSTT 1130

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE-M 1185
            ++LK       ++AK VQ A+EYTTLR V + TE+WYDPD   T I ED + V +YY  M
Sbjct: 1131 IYLKGDYAKLPQKAKEVQAAIEYTTLRKVADRTEIWYDPDIENTRIVEDEDTVLAYYSLM 1190

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
             DED +  + SPW+LRI L+R MM+DK+     +  ++ +EF +DL    +D+NA   ++
Sbjct: 1191 VDEDFS--RYSPWVLRIVLDRRMMLDKETKPQLIVSRLKEEFQNDLDICSSDENAPVPVI 1248

Query: 1246 RIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR--------------------- 1284
            RIRI+ +E    +  D   E+D  L+K+E+++L ++ LR                     
Sbjct: 1249 RIRILRNEEDVDQ--DALDEEDTILRKLEAHILNQIPLRGIEGINRVFMVEKKNVALNDQ 1306

Query: 1285 --------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
                          G+NL  VM  ++VDA RT SN+++EI E LGIEA R ALL ELR V
Sbjct: 1307 GDYEQFSEWVLETDGINLKNVMTVDNVDAGRTYSNNIVEITETLGIEAGRAALLKELRNV 1366

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            I FDGSYVNYRHL++LCD MT  G LMAITRHGINR +T  + R SFEETV+IL++AA  
Sbjct: 1367 IEFDGSYVNYRHLSMLCDVMTKHGILMAITRHGINRAETSALARSSFEETVEILMEAAAC 1426

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSP 1450
            AE D  +GV ENI++GQ+AP+GTG+  + L+++ L NA+ ++        ++G   + +P
Sbjct: 1427 AELDQCQGVAENIIMGQVAPLGTGNFKVMLDEKSL-NAMAMKAGIRARD-KYG---SATP 1481

Query: 1451 VSGTPYHDGMMSPGY--------------LFSPNLRLSPVTDAQFSPY-VGGMAFSPTSS 1495
             + TPY +   +P Y              +FSP +      +  FSP  +G  A SP   
Sbjct: 1482 GAFTPYVNPEKTPFYPSGANGFANGGGDAMFSPIISAGAYMNGGFSPVPIGASAASPAFM 1541

Query: 1496 PG------YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
             G      + P SP YSP+SPGYSPTSPGYSPTSPGYSPTSPGYSPTSP+YSP+SPGYSP
Sbjct: 1542 GGAGAQSPFVPKSPQYSPTSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSP 1601

Query: 1550 TSP------------------------------------------AYSPTSPSYSPTSPS 1567
            TSP                                          AYSPTSPSYSPTSP+
Sbjct: 1602 TSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPA 1661

Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA-------YSPTSPAYSPT 1620
            YSPTSPSYSPTSP+YSPTSPSYSPTSP YSPTSPSYSPTSP+       YSPTSP YSPT
Sbjct: 1662 YSPTSPSYSPTSPAYSPTSPSYSPTSPKYSPTSPSYSPTSPSYSPTSPKYSPTSPQYSPT 1721

Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
            SP YSPTSP YSPTSP Y+ TSP+Y  +S +
Sbjct: 1722 SPQYSPTSPQYSPTSPQYAATSPAYQGSSAT 1752



 Score =  199 bits (505), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/283 (46%), Positives = 145/283 (51%), Gaps = 102/283 (36%)

Query: 1519 YSPTSPG-YSP-TSPGYSPTSPT---------------------------YSPSSPGYSP 1549
            Y   +PG ++P  +P  +P  P+                           +SP   G S 
Sbjct: 1476 YGSATPGAFTPYVNPEKTPFYPSGANGFANGGGDAMFSPIISAGAYMNGGFSPVPIGASA 1535

Query: 1550 TSPA----------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1599
             SPA          + P SP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSPSYSPT
Sbjct: 1536 ASPAFMGGAGAQSPFVPKSPQYSPTSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPSYSPT 1595

Query: 1600 SPSYSPTSP------------------------------------------AYSPTSPAY 1617
            SP YSPTSP                                          AYSPTSP+Y
Sbjct: 1596 SPGYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSY 1655

Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP---------------------SYSPTS 1656
            SPTSPAYSPTSPSYSPTSP+YSPTSPSYSPTSP                      YSPTS
Sbjct: 1656 SPTSPAYSPTSPSYSPTSPAYSPTSPSYSPTSPKYSPTSPSYSPTSPSYSPTSPKYSPTS 1715

Query: 1657 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
            P YSPTSP YSPTSP YSPTSP Y+ TSP Y  +S +   Q +
Sbjct: 1716 PQYSPTSPQYSPTSPQYSPTSPQYAATSPAYQGSSATAAKQKS 1758



 Score =  183 bits (465), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 126/290 (43%), Positives = 150/290 (51%), Gaps = 89/290 (30%)

Query: 1540 YSPSSPG-YSP-TSPAYSPTSPS-------------YSPTSPSYSPTSPSYSPTSPSYSP 1584
            Y  ++PG ++P  +P  +P  PS             +SP   + +  +  +SP     S 
Sbjct: 1476 YGSATPGAFTPYVNPEKTPFYPSGANGFANGGGDAMFSPIISAGAYMNGGFSPVPIGASA 1535

Query: 1585 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
             SP++   + + SP    + P SP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSPS
Sbjct: 1536 ASPAFMGGAGAQSP----FVPKSPQYSPTSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPS 1591

Query: 1645 YSPTSPSYSPTSP------------------------------------------SYSPT 1662
            YSPTSP YSPTSP                                          +YSPT
Sbjct: 1592 YSPTSPGYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1651

Query: 1663 SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR--------- 1713
            SP+YSPTSP YSPTSPSYSPTSP YSPT           SPS  YSP+SP+         
Sbjct: 1652 SPSYSPTSPAYSPTSPSYSPTSPAYSPT-----------SPS--YSPTSPKYSPTSPSYS 1698

Query: 1714 ------LSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAG 1757
                     +  YSPTSP YSPTS  YSPTSP YSP+SP Y+ +SP   G
Sbjct: 1699 PTSPSYSPTSPKYSPTSPQYSPTSPQYSPTSPQYSPTSPQYAATSPAYQG 1748



 Score =  157 bits (396), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 117/234 (50%), Positives = 143/234 (61%), Gaps = 47/234 (20%)

Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1655
            +SP   + +  +  +SP     S  SPA+   + + SP    + P SP YSPTSP YSPT
Sbjct: 1512 FSPIISAGAYMNGGFSPVPIGASAASPAFMGGAGAQSP----FVPKSPQYSPTSPGYSPT 1567

Query: 1656 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSL---------- 1705
            SP YSPTSP YSPTSPGYSPTSPSYSPTSP YSPTSP Y+P S  YSP+           
Sbjct: 1568 SPGYSPTSPGYSPTSPGYSPTSPSYSPTSPGYSPTSPGYSPTSPSYSPTSPSYSPTSPSY 1627

Query: 1706 -------------------AYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
                               AYSP+SP       YSPTSP YSPTS SYSPTSP+YSP+SP
Sbjct: 1628 SPTSPSYSPTSPSYSPTSPAYSPTSP------SYSPTSPAYSPTSPSYSPTSPAYSPTSP 1681

Query: 1747 TYSPSSP------YNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTP 1793
            +YSP+SP       +    +P YSP+SP+YSP++  YSP++P YSP+S  QY+P
Sbjct: 1682 SYSPTSPKYSPTSPSYSPTSPSYSPTSPKYSPTSPQYSPTSPQYSPTS-PQYSP 1734



 Score =  138 bits (347), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/238 (42%), Positives = 125/238 (52%), Gaps = 73/238 (30%)

Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1669
            +SP   A +  +  +SP     S  SP++   + + SP    + P SP YSPTSP YSPT
Sbjct: 1512 FSPIISAGAYMNGGFSPVPIGASAASPAFMGGAGAQSP----FVPKSPQYSPTSPGYSPT 1567

Query: 1670 SPGYSPTSPSYS---PTSPTYSPTSPSYNPQSAKYSPS---------------------- 1704
            SPGYSPTSP      PTSP YSPTSPSY+P S  YSP+                      
Sbjct: 1568 SPGYSPTSP---GYSPTSPGYSPTSPSYSPTSPGYSPTSPGYSPTSPSYSPTSPSYSPTS 1624

Query: 1705 ---------------------LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
                                  AYSP+SP       YSPTSP YSPTS SYSPTSP+YSP
Sbjct: 1625 PSYSPTSPSYSPTSPSYSPTSPAYSPTSP------SYSPTSPAYSPTSPSYSPTSPAYSP 1678

Query: 1744 SSPTYSPSSP-------------YNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSS 1787
            +SP+YSP+SP              +    +P YSP+SPQYSP++  YSP++P YSP+S
Sbjct: 1679 TSPSYSPTSPKYSPTSPSYSPTSPSYSPTSPKYSPTSPQYSPTSPQYSPTSPQYSPTS 1736


>gi|209880239|ref|XP_002141559.1| DNA-directed RNA polymerase II subunit RPB1 [Cryptosporidium muris
            RN66]
 gi|209557165|gb|EEA07210.1| DNA-directed RNA polymerase II subunit RPB1, putative
            [Cryptosporidium muris RN66]
          Length = 1927

 Score = 1799 bits (4659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 960/1937 (49%), Positives = 1267/1937 (65%), Gaps = 203/1937 (10%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            P+S  E+ K+  ++FG+LSPD IR+ SV+++   +  E GKPK GGL+DP +GTID  + 
Sbjct: 10   PFSNKELKKIYSIEFGVLSPDLIRRYSVLEVTISDLYENGKPKSGGLNDPLMGTIDYHVL 69

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            CETC  ++  CPGHF H+EL KPMFHIGF+  VL I+R VCF CSK+  D  D KFK   
Sbjct: 70   CETCHMDIKTCPGHFAHIELGKPMFHIGFVSVVLKILRCVCFACSKLFIDPMDPKFKVIQ 129

Query: 126  KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKM 185
            K RNP  RL+++++  K  ++C       V   DG         GCG  QP+++ +G  +
Sbjct: 130  KTRNPHLRLQRLVEISKTYSRC-------VISSDG--------SGCGFVQPQISKDGYNL 174

Query: 186  IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
                  + +  DD     E  + ++ L+AE VL + KRI+DED +LLG +PK   P W +
Sbjct: 175  YIRQHEESRNMDD-----ESTDSRRMLSAEEVLNIFKRITDEDMKLLGFDPKRCNPCWFV 229

Query: 246  LQVLPIPPPPVRP---------SDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLL 296
              +LPIPPP VRP          DDLT +L  I++ NENL+RQ R G+P HI++E   +L
Sbjct: 230  TTILPIPPPAVRPYVQFGSDRSEDDLTLKLQQIVKLNENLKRQIRLGSPDHILNEMIAVL 289

Query: 297  QFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPD 356
            Q+H+ T  +N+LPG P++  RS RPIKS+ +RLK K+GRIRGNLMGKRVDFSARTVIT D
Sbjct: 290  QYHLVTLVNNDLPGLPQSRTRSNRPIKSLRARLKGKDGRIRGNLMGKRVDFSARTVITGD 349

Query: 357  PTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRL 416
            P +++DQ+GVP+SIA+ LTYPE VTPYNIE LKELVE GP+  PG T    I++DDG ++
Sbjct: 350  PNLSVDQVGVPYSIAMTLTYPEIVTPYNIEELKELVERGPYEWPGATS---IVQDDGTKI 406

Query: 417  DLRYLKKSSDHH---LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
            DLR+  +S+++    L+ G+KVERH+ + D VLFNRQPSLHKMSIMGHR+KI+PYSTFRL
Sbjct: 407  DLRFCNRSNNNANCVLQYGWKVERHMKNDDLVLFNRQPSLHKMSIMGHRVKILPYSTFRL 466

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NLSVTSPYNADFDGDEMN+H+ QS+ETR+E+  LMMVPK IVSPQ NRPV+GIVQD+LLG
Sbjct: 467  NLSVTSPYNADFDGDEMNLHLAQSYETRSEIKHLMMVPKQIVSPQGNRPVIGIVQDSLLG 526

Query: 534  CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII-------- 585
               +T++ TF+ KD F+ +L+    ++G +P P IL+P+PLWTGKQ+  +++        
Sbjct: 527  LFLLTRKSTFLTKDRFLQLLLCIPYWNGIIPPPAILRPQPLWTGKQIITVLLTFTTDLGE 586

Query: 586  PKQINLFRTAAW---HADNDKG-----------------ILTAGDTLVRIEKGELLSGTL 625
            P ++NL R  +     + N  G                  ++  D  V I++GE + G +
Sbjct: 587  PIELNLMRDGSIVNIRSSNTSGNKSENKDEAKETIINNPWISEYDNQVLIQQGEHICGII 646

Query: 626  CKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTME 685
             KK  G+S+GSLIH++W E+GP+    FL +TQ +VN WLL++ F++G  D      T+E
Sbjct: 647  TKKIAGSSSGSLIHILWNEIGPEKTGLFLTYTQMVVNTWLLEHGFTVGCQDIQPLNFTLE 706

Query: 686  TINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSL 745
             I  ++  +K +V+ +I++AQ   L+ +PG++++ESFE +VNQ LN+AR+ +G  A ++L
Sbjct: 707  KIMTSLENSKLHVQQIIRRAQKGQLDCQPGKSLVESFEAQVNQELNSAREMSGIIATENL 766

Query: 746  SES-NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 804
              S NN+ AMV  GSKGS INISQ+ ACVGQQNVEGKRIPFGF DR+LPHF K DYGPES
Sbjct: 767  DPSKNNMIAMVQCGSKGSTINISQIMACVGQQNVEGKRIPFGFRDRSLPHFLKYDYGPES 826

Query: 805  RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 864
            RGFV NSYL GLTPQE FFHAMGGREG+IDTA KTSETGYIQRRL+KAMED MV+YD TV
Sbjct: 827  RGFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDCMVQYDRTV 886

Query: 865  RNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNY--MLQE 922
            RN  GD+IQFLYGEDGM   +IE Q ++ L+M  S F   +R  M+   W  N+  +   
Sbjct: 887  RNCCGDIIQFLYGEDGMAGEFIEDQVIELLQMDPSVFQHKYRHNMEHPRWGSNWQGVSSN 946

Query: 923  YIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKV 982
             I +L+   E +++ + E ++L  DR  L  +I   G++   LP+N+ R+I  AQ+ F  
Sbjct: 947  TIKNLQFDLESQNILNTEYKQLVLDRELLGQDIFPDGETRQHLPINIGRIIQMAQQKF-- 1004

Query: 983  DPRRPSD-------MHPMEVVEAVDKLQERL---------------KVVPGEDPLSVEAQ 1020
             PR   D         P+ +++ V+ L ++L               K+ P  D +  E Q
Sbjct: 1005 -PRYNVDDDSGRFEWGPVTIIKQVEGLLDKLLLWKNMSTKDNLDNPKLPPTFDNIIAEVQ 1063

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            KNAT    I +RS  ASK++L+  RL   AFEWVIGEI+ +F +SL   GEM+G +AAQS
Sbjct: 1064 KNATTLLGIHIRSALASKKILEIDRLGPTAFEWVIGEIQHQFYRSLAHSGEMVGTIAAQS 1123

Query: 1081 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERA 1140
            IGEPATQMTLNTFH+AGV +KNVTLGVPRLRE+INVAK ++TP+L+++L+  + + +E A
Sbjct: 1124 IGEPATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTIYLENSIANDQEHA 1183

Query: 1141 KNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLL 1200
            K+V   LE+TTL ++T    + YDP    TI+E D ++V  YYE PD+     ++  WLL
Sbjct: 1184 KDVLTLLEHTTLENITTMAHILYDPKFDETIVEADKQWVSDYYEFPDDVDIKSRLGTWLL 1243

Query: 1201 RIELNREMMVDKKLSMAAVAEKINQEF-DDDLTCIFNDDNADKLILRIRIMNDEAPKGEL 1259
            RI+LN +++ DKKLSM  + +KI  EF +D+L CI+ DDN+D+L+LR+RI N E      
Sbjct: 1244 RIQLNSKLVTDKKLSMKEIGDKILMEFSNDELDCIWTDDNSDELVLRLRIKNLEPTNSGT 1303

Query: 1260 NDES-------------------AEDDVFLKKIESNMLTEMALRGV-------------- 1286
             D                      E+  FL+K+ +  L+++ LRG+              
Sbjct: 1304 QDTVMNSEFQIDDGHYQPPTPPVVEEHKFLEKLMTECLSQITLRGISNIKKVYMKEEQVT 1363

Query: 1287 ----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                                  NL AV+CHE +D+ RT SN + E+  VLGIEAVRRALL
Sbjct: 1364 RYDILSQKIVRDNQWVLDTDGCNLEAVLCHEAIDSTRTISNDITEVFSVLGIEAVRRALL 1423

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
             ELR VISFDGSYVNYRHLA+LCD MT +GHLM+ITRHG+NR D GP+ +CSFEETV+IL
Sbjct: 1424 KELRTVISFDGSYVNYRHLALLCDNMTQKGHLMSITRHGMNRVDRGPLQKCSFEETVEIL 1483

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNA---IELQLPSYMEGLE 1441
            +DAA+F E+DYL GV+EN+M+GQL+P GT    L ++ + L++    +++   S   G  
Sbjct: 1484 MDAAMFGETDYLNGVSENVMVGQLSPYGTACFDLLVDSDKLRDTATHLDIHGNSQKSGFI 1543

Query: 1442 FGMTPARSPVSGTP--YHDGM----------MSPGYLFSPNLRLSPVTDAQFSPYVGGMA 1489
              ++ A + V  T   Y+ G           MSP  L+S +  +SP+   QFSP V    
Sbjct: 1544 SDISQASTGVFSTNKGYNSGTFDSPMSPLSPMSP--LYSTHEPMSPMISGQFSP-VQMTP 1600

Query: 1490 FSPTS--SPGYSPSSPGYSPSSP-----GYSPTSPGYSPTSPGY--------------SP 1528
             SP S  SP    S   YSP+SP      Y+PTSP Y+  SP Y              + 
Sbjct: 1601 RSPMSPVSPSGILSPMPYSPASPTSPLIDYTPTSPIYAVRSPAYGHETEERTKKRYKANI 1660

Query: 1529 TSPGYSPTSPTYS------PSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1582
             +  YSPTSP YS       SSP  SPTSP   P SP+YSPTSP+YSPTSP+YSPTSP+Y
Sbjct: 1661 ATSAYSPTSPVYSGDKDGDSSSPFMSPTSPGVEPLSPNYSPTSPNYSPTSPNYSPTSPNY 1720

Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
            SPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP+YSPTSP YSPTS
Sbjct: 1721 SPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPNYSPTSPHYSPTSPNYSPTSPHYSPTS 1780

Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYS 1702
            P+YSPTSP YSPTSP+YSP+SP YSPTSP Y+P SP+YSP+SP Y+P SP+Y+P S +Y+
Sbjct: 1781 PNYSPTSPHYSPTSPNYSPSSPHYSPTSPSYNPASPNYSPSSPHYNPASPNYSPSSPQYN 1840

Query: 1703 PSL-AYSPSSPRLSPASP-YSPTSPNYSPT-----SSSYSPTSPSYSPSSPTYSPSSP-- 1753
            P+L  YSPSSP+ +P SP YSP+SPNY  +     S  YSP+SP Y  S   Y P+SP  
Sbjct: 1841 PALPNYSPSSPQYNPTSPNYSPSSPNYVLSNGNIDSPQYSPSSPHYDQSVAAYHPTSPSY 1900

Query: 1754 --YNAGGGNPDYSPSSP 1768
               N      +YSP+SP
Sbjct: 1901 TSTNMAAEEAEYSPTSP 1917


>gi|403175763|ref|XP_003334524.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
 gi|375171744|gb|EFP90105.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
            tritici CRL 75-36-700-3]
          Length = 1703

 Score = 1798 bits (4656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 933/1725 (54%), Positives = 1184/1725 (68%), Gaps = 114/1725 (6%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTID 61
            +F +S A   +VR +QFGI+ PDEI+  SV +IEH ET E G   PK GGLSDPR+GTID
Sbjct: 5    QFVHSSAPTRRVRTIQFGIMGPDEIKGFSVAKIEHPETYEEGGIHPKVGGLSDPRMGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILAD--EDDH 119
            R MKC+TC  +M+ CPGHF H+ELA+ ++H+GF+  V  I+  VC  CSK+ +D   D  
Sbjct: 65   RNMKCQTCGEDMSTCPGHFAHIELARAVYHVGFLNRVKKILECVCVQCSKLKSDVVTDPA 124

Query: 120  KFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK----KNKGGCGAQQ 175
                A +I++PK R   +   C+ K  CE     D P ++ +EP+     K  GGCG  Q
Sbjct: 125  LELIARRIKDPKKRFTAVHQLCRGKNICEADVNDDKP-ENPDEPVPDDQPKGHGGCGHLQ 183

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLP--EPVERKQTLTAERVLGVLKRISDEDCQLLG 233
            P++  EG+KM  +Y  +RK  +D+E +      ERK  L A +   +L+RISDED Q+LG
Sbjct: 184  PQIRKEGLKMFLQY-TKRKGEEDEEGVGTLAGTERK-PLPASQAQAILRRISDEDLQILG 241

Query: 234  LNPKYARPDWMILQVL-----------PIPPPPVRPSDDLTHQLAMIIRHNENLRRQERN 282
            L+   ARP+WM+L VL            +     R  DDLT++LA +I+ N+ +R+ E  
Sbjct: 242  LHASEARPEWMVLTVLPIPPPPVRPSIAMDGGATRGEDDLTYKLAEVIKANQAVRKFESE 301

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            GAPAH+I+EF  LLQ+HIATY DN+LPGQP+A Q+SGRPIKS+ +RLK KEGR+RGNLMG
Sbjct: 302  GAPAHVITEFETLLQWHIATYMDNDLPGQPQALQKSGRPIKSLRARLKGKEGRLRGNLMG 361

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT DP + +DQ+GVP+SIA NLTYPE VTPYNI  L+ELV+ GP   PG 
Sbjct: 362  KRVDFSARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNISYLQELVQNGPTEYPG- 420

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              A+Y++RD G R+DLRY  K +D  L+ G+ VERHL DGD+VLFNRQPSLHKMS+M HR
Sbjct: 421  --ARYVVRDTGDRIDLRY-NKRADTFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMSHR 477

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            IK+MPYSTFRLNLSVT PYNADFDGDEMN+HVPQS ETRAE+ ++  VP+ IVSPQ+N+P
Sbjct: 478  IKLMPYSTFRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVSPQANKP 537

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            VMGIVQDTL G RK T RD F+++D   NIL+W   +DG VP P ILKP+PLWTGKQ+ +
Sbjct: 538  VMGIVQDTLCGVRKFTLRDCFMDRDFVQNILLWVPGWDGVVPPPAILKPKPLWTGKQILS 597

Query: 583  LIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            + IPK INL R      D ++  +   D  + IE GE++ G + KK +G S G LIHVI+
Sbjct: 598  MCIPKGINLLRD-----DENQTSIPIADKGLWIEDGEIVYGVVDKKCVGASQGGLIHVIF 652

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E GP   R      Q +VNYWLL + FSIGIGDT+ D  TME I + IS+AK  V   I
Sbjct: 653  REKGPQVTRGLFSGIQMVVNYWLLHHGFSIGIGDTVPDKATMEAITNFISEAKREVSETI 712

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
              AQ+  L+PEPG T+ ESFE KVN+ LNTARD AG SA++SL + NN+K MVTAGSKGS
Sbjct: 713  SLAQEDKLQPEPGMTIRESFEAKVNRALNTARDNAGRSAEQSLKDDNNVKQMVTAGSKGS 772

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
            FINISQM+ACVGQQ+VEGKRIP+GF  RTLPHFTKDDY PESRGFVENSYLRGLTPQEFF
Sbjct: 773  FINISQMSACVGQQSVEGKRIPYGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFF 832

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAM GREGLIDTAVKT+ETGYIQRRL+KA+ED+MV YDGTVRNSLGD++QF+YGEDG+D
Sbjct: 833  FHAMAGREGLIDTAVKTAETGYIQRRLLKALEDVMVTYDGTVRNSLGDIVQFVYGEDGVD 892

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAE 940
               +E Q LDS ++   +FD+ FR ++ +   ++ P  +LQ  ++D  +   L+ + D E
Sbjct: 893  GGTVEYQNLDSARLSNEKFDRKFRVDVTDPKHDYKPG-VLQVGLND--SSLALQSILDVE 949

Query: 941  VQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
             ++L  DR  L   I T G+   PLPVN++R+I NAQ+ F +D R+PSD+ P E+++ V 
Sbjct: 950  WKQLCEDRETLRKFIFTDGNGRKPLPVNIRRIIQNAQQIFHIDFRKPSDLPPHEIIQMVK 1009

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L +RL VV G+D LS  AQ+N TL F ILLRS FA++RVL+E  L REAFEWV+GEIE+
Sbjct: 1010 DLCDRLIVVRGDDALSRAAQENCTLLFRILLRSNFATRRVLEEFHLNREAFEWVLGEIEA 1069

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RF QSL APGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA  I
Sbjct: 1070 RFNQSLAAPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNI 1129

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            KTPSL+V+L   + +  E AK++Q  L +TTL++VT +T++ YDP+P  TI+EED++FV 
Sbjct: 1130 KTPSLTVYLNENIANDIEAAKDIQTELAHTTLKTVTASTQIIYDPNPKSTIVEEDLDFVD 1189

Query: 1181 SYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDD 1238
            +++ +PD+++  +    SPWLLR+EL+R  M+DKKLSM  VA +I + F  DL  I+++D
Sbjct: 1190 AFFAVPDDEVEAQLDHQSPWLLRLELDRAKMLDKKLSMNFVASRIAEVFKSDLFIIWSED 1249

Query: 1239 NADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------------ 1286
            NA+KL +R R M       + ++   E+DVFL++I+  ML  ++LRGV            
Sbjct: 1250 NAEKLTIRCRAMQSSEADKDDDEGQVEEDVFLREID-QMLGGISLRGVEGIQRVFMLQHN 1308

Query: 1287 -----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
                                   NL  V+C + VD  RT SN+ +EI+ VLG+EA R +L
Sbjct: 1309 VNYINSSGEFERKTEWVLETDGINLKEVLCVDGVDPIRTVSNNCVEILTVLGVEAARASL 1368

Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
            L ELR VI FDGSYVNYRHLA+LCD MT RG LMAITRHGINR DTGP+MRCSFEETV+I
Sbjct: 1369 LKELRNVIEFDGSYVNYRHLALLCDLMTNRGSLMAITRHGINRTDTGPLMRCSFEETVEI 1428

Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNA-IELQLPSYMEGLEF 1442
            L+DAA   E D+  GV EN++LGQLAP+GTG   + L+ EMLK+  I+ +LP   E    
Sbjct: 1429 LMDAAALGEKDHCTGVAENVLLGQLAPMGTGAFDVALDLEMLKDVVIDHRLPVAGE---- 1484

Query: 1443 GMTPARSPVSGTPYHDGMMSPGYLFSPNLRLS------------PVTDAQFSPYV----- 1485
                    + G  Y DG M+PG   +P                 PV  A FSP +     
Sbjct: 1485 --------ILGGRYADGAMTPGGGMTPYAEFGDTRSPTARFEDGPVPHAMFSPIITAGAD 1536

Query: 1486 GGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP 1545
             G   S     GY     G SP   G   +      +       SP Y+PTSPT+S +SP
Sbjct: 1537 DGFGGSNDMYGGYG----GQSPYGAGGGTSPGYSPSSPSYNPAASPAYTPTSPTWSGASP 1592

Query: 1546 GY-SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1604
               S TSP YSPTSP    TSP +SP SP++SP SP++SPTSPS+SP SP +SP+SP+YS
Sbjct: 1593 WVASGTSPGYSPTSPRMGATSPRFSPASPNFSPASPNFSPTSPSFSPASPRFSPSSPNYS 1652

Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
            P   A   TSP YSPTSPA SP+SP YSP SP++SP SP YSPT+
Sbjct: 1653 PAGLA---TSPRYSPTSPAMSPSSPKYSPASPAFSPASPKYSPTT 1694



 Score =  110 bits (274), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/127 (51%), Positives = 89/127 (70%), Gaps = 11/127 (8%)

Query: 1676 TSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSY 1734
             SP+Y+PTSPT+S  SP     ++  SP   YSP+SPR+   SP +SP SPN+SP S ++
Sbjct: 1576 ASPAYTPTSPTWSGASPWV---ASGTSP--GYSPTSPRMGATSPRFSPASPNFSPASPNF 1630

Query: 1735 SPTSPSYSPSSPTYSPSSPYNAGGG---NPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQ 1790
            SPTSPS+SP+SP +SPSSP  +  G   +P YSP+SP  SPS+  YSP++P +SP+S  +
Sbjct: 1631 SPTSPSFSPASPRFSPSSPNYSPAGLATSPRYSPTSPAMSPSSPKYSPASPAFSPAS-PK 1689

Query: 1791 YTPQTNR 1797
            Y+P T R
Sbjct: 1690 YSPTTQR 1696


>gi|3172136|gb|AAC18417.1| RNA polymerase II largest subunit [Acanthamoeba castellanii]
          Length = 1569

 Score = 1795 bits (4648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 930/1562 (59%), Positives = 1125/1562 (72%), Gaps = 129/1562 (8%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGHLELAKP+F+IGF+ TVL I+RSVCF+CSK+L DE       A +++N K+R 
Sbjct: 1    ECPGHFGHLELAKPVFNIGFLTTVLKILRSVCFHCSKLLVDE-------AQELKNVKHRF 53

Query: 135  KKILDACKNKTKCEGGDEIDVPGQDGE-------EPLKKNKGGCGAQQPKLTIEGMKMIA 187
             ++    K KT CEGG++     + G+       + +KK+ GGCG  QPK+T +GMK++A
Sbjct: 54   ARVYTLAKTKTICEGGEDTGTDKEQGDSTDPKEKKEVKKSHGGCGNFQPKITKDGMKIMA 113

Query: 188  EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQ 247
            E+K      DD       VE+KQ LTAE+V  +LK ISDEDC  +G +PK+ARPDWMI+ 
Sbjct: 114  EFK---NVGDDPN-----VEKKQLLTAEKVHAILKLISDEDCLAMGFDPKWARPDWMIIT 165

Query: 248  VLPIPP----------PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
            ++PIPP             R  DDLTH+LA II+ N NLR+QE NGA AHIIS+F +LLQ
Sbjct: 166  IMPIPPPPVRPSITMDSAARGEDDLTHKLADIIKANANLRKQEANGAAAHIISQFQELLQ 225

Query: 298  FHIATYFDNELPGQPRATQRSG-RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPD 356
            +HIAT+ DNE+PG P+AT RSG R +KS+  RL+ KEGRIRGNLMGKRVDFSARTVIT D
Sbjct: 226  YHIATFIDNEIPGFPQATVRSGSRALKSLKQRLRGKEGRIRGNLMGKRVDFSARTVITGD 285

Query: 357  PTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRL 416
            P I+ID++GVP SIALNLTYPE VTP+NI+++ EL+  GP   PG   AKYIIRDDGQRL
Sbjct: 286  PNISIDEVGVPRSIALNLTYPELVTPFNIDKMYELIRNGPTEHPG---AKYIIRDDGQRL 342

Query: 417  DLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLS 476
            DLR+ +K+SD HLE GYKVERH+ DGD ++FNRQPSLHKMS+MGH++KIMPYSTFRLNLS
Sbjct: 343  DLRFARKASDLHLEYGYKVERHIQDGDVIIFNRQPSLHKMSMMGHKVKIMPYSTFRLNLS 402

Query: 477  VTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRK 536
            VT+PYNADFDGDEMNMHVPQ+   RAEV+ELMMVPK IV+ QSN+PV+GIVQDTLLG   
Sbjct: 403  VTTPYNADFDGDEMNMHVPQTPGARAEVIELMMVPKQIVTAQSNKPVIGIVQDTLLGGCL 462

Query: 537  ITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAA 596
            +T+RDTFIEKDV MNILMW E +DG VP PTILKP+ LWTGKQVF+LIIP+  N      
Sbjct: 463  LTQRDTFIEKDVMMNILMWLESWDGTVPTPTILKPKQLWTGKQVFSLIIPRNTNFV---- 518

Query: 597  WHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGH 656
             +AD+++  ++  D  V IE+GEL+SG L KKTLGTS  SL+HVIW E G +  + FL  
Sbjct: 519  -NADDEEPDMSFTDNKVLIEEGELVSGILNKKTLGTSHKSLVHVIWNEHGSEVCKHFLNQ 577

Query: 657  TQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR 716
             Q +VNYWLL + FS+G+GDTIAD +T+  I  TI KAK+ VK    +AQ   LE +PGR
Sbjct: 578  VQHVVNYWLLHHGFSVGVGDTIADEETLAKITQTIRKAKDEVKERQLEAQQGQLERQPGR 637

Query: 717  TMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 776
            TMMESFE  +NQ+LN ARD+AG+SAQKSL  SNN KAMV AGSKGS INISQ+ ACVGQQ
Sbjct: 638  TMMESFEFVINQILNKARDDAGNSAQKSLRRSNNFKAMVIAGSKGSAINISQVLACVGQQ 697

Query: 777  NVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 836
            NVEGKRIPF F DRTLPHF KDD+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA
Sbjct: 698  NVEGKRIPFCFRDRTLPHFVKDDFGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 757

Query: 837  VKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKM 896
            VKT+ETGYIQRRLVKA+ED+MVKYD TVRNSLGDVIQFLYGEDGMD   +E+Q LD+LKM
Sbjct: 758  VKTAETGYIQRRLVKALEDVMVKYDYTVRNSLGDVIQFLYGEDGMDGQTVETQPLDALKM 817

Query: 897  KKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIA 956
                    ++ + D  +W   ++     D +    E + + D E +++ ADR  L  +I 
Sbjct: 818  SNEGVVLKYQHDYDSPSWGEGWIDPVIADAIANSPEKKRILDKEFEQILADRRLLREKIF 877

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
             +GD  WPLPVNL R+I NAQK F + P++ SD+ P ++VE +  L ERL V+PG+D +S
Sbjct: 878  LAGDDRWPLPVNLTRMILNAQKIFHLGPKKVSDLDPCQIVEDLGNLIERLVVIPGQDDIS 937

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
             EAQ NA L F+ILLR T AS+RVL+E+RL + +++W++GEI  RF +SL  PGEMIG +
Sbjct: 938  KEAQANAILLFSILLRFTLASRRVLQEYRLDQISWDWLLGEITDRFYKSLCDPGEMIGAL 997

Query: 1077 AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNST 1136
            AAQSIGEPATQMTLNTFH+AGVSAKNVTLGVPRL+E+IN+AK IKTPSL+V+L+P  +  
Sbjct: 998  AAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKELINIAKTIKTPSLTVYLEPHCSRD 1057

Query: 1137 KERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKIS 1196
             E AKNVQC+L++TTLR VT ATE++YDPDP+ T+I ED +FV++Y+ MP+E+I    +S
Sbjct: 1058 HEAAKNVQCSLQHTTLRDVTAATEIFYDPDPVNTVITEDQDFVRAYFLMPEEEINTSNLS 1117

Query: 1197 PWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPK 1256
            PWLLRIELNRE M D KLSM  +AE+I+ +F  DL CI+NDDNADKLILRIRI NDE  K
Sbjct: 1118 PWLLRIELNREKMTDTKLSMQEIAERIHADFGGDLNCIYNDDNADKLILRIRINNDEENK 1177

Query: 1257 GELNDES-AEDDVFLKKIESNMLTEMALRGV----------------------------- 1286
                + S  +DDVFLK+IESNMLTEM L+G+                             
Sbjct: 1178 APDQEGSVGDDDVFLKQIESNMLTEMDLKGIEGIKKVFIREDKNKVAIDARGEYTKANEL 1237

Query: 1287 -------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVN 1339
                   NLLAVM H DVD  RTTSN++IE IEVLGIEAVR ALL ELR VISFDG+YVN
Sbjct: 1238 VLDTEGTNLLAVMSHPDVDHTRTTSNNIIETIEVLGIEAVRNALLRELRNVISFDGAYVN 1297

Query: 1340 YRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGV 1399
            YRHLAIL D MTYRGHLMAITRHGINR +TG +MRCSFEET DILL+AA F+E D L GV
Sbjct: 1298 YRHLAILADVMTYRGHLMAITRHGINRVETGCLMRCSFEETADILLEAATFSELDPLSGV 1357

Query: 1400 TENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTP-ARSPVSGTPY-- 1456
            +ENI+LGQL P+GTG   L+LN+  LK+AIE   P+  E       P A SP S TPY  
Sbjct: 1358 SENILLGQLPPLGTGCFDLFLNESKLKDAIE--PPAGGEATAMFYEPGATSPGSATPYMG 1415

Query: 1457 HDGMMSPGYLF-SPNLRLSPVTD--AQFSPYVGGMAFSP---------------TSSPGY 1498
             D    P +   +P  R+SP     A +SPYV    FSP                +SPGY
Sbjct: 1416 SDERYLPNFFHTTPMYRMSPGATPAASYSPYVDFGEFSPGRGSFSPSPSSPSYSPASPGY 1475

Query: 1499 SPSSP----------------------------GYSPSSPGYSPTSPGYSPTSPGYSPTS 1530
            SP+                              GYSPSSP YSPTSP YSP SP YSPTS
Sbjct: 1476 SPAGAGYSPSSPGYSPSSPGYSPSSPGYSPASPGYSPSSPAYSPTSPKYSPASPSYSPTS 1535

Query: 1531 PG 1532
            P 
Sbjct: 1536 PA 1537



 Score = 48.1 bits (113), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 52/143 (36%), Positives = 69/143 (48%), Gaps = 25/143 (17%)

Query: 1634 TSPSYSP--TSP-SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP--TYS 1688
            T+  Y P  TSP S +P   S     P++  T+P Y   SPG +P + SYSP      +S
Sbjct: 1396 TAMFYEPGATSPGSATPYMGSDERYLPNFFHTTPMYR-MSPGATPAA-SYSPYVDFGEFS 1453

Query: 1689 P---TSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP---------------NYSPT 1730
            P   +        +    S  YSP+    SP+SP    S                 YSP+
Sbjct: 1454 PGRGSFSPSPSSPSYSPASPGYSPAGAGYSPSSPGYSPSSPGYSPSSPGYSPASPGYSPS 1513

Query: 1731 SSSYSPTSPSYSPSSPTYSPSSP 1753
            S +YSPTSP YSP+SP+YSP+SP
Sbjct: 1514 SPAYSPTSPKYSPASPSYSPTSP 1536


>gi|327287678|ref|XP_003228555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Anolis
            carolinensis]
          Length = 1969

 Score = 1794 bits (4647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 909/1623 (56%), Positives = 1152/1623 (70%), Gaps = 118/1623 (7%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFGILSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 17   IKRVQFGILSPDEMKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 76

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 77   MTECPGHFGHIELAKPVFHVGFLGKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 136

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E + K KG  GCG  QP++   G++
Sbjct: 137  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDITKEKGHGGCGRYQPRIRRSGLE 196

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG++PK+ARP+WM
Sbjct: 197  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFILGMDPKFARPEWM 247

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I  VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 248  ICTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 307

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 308  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 367

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 368  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 424

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL++GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 425  RIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 484

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 485  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 544

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 545  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 604

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 605  HSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVT 664

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IADAKT + I +TI KAK +V  +I++A +  L
Sbjct: 665  RLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 724

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 725  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 784

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 785  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 844

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 845  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 904

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K F+F+   E      + +E + D+ +   +++  + E +K++ DR  
Sbjct: 905  LATLKPSNKAFEKKFKFDYTNERALRRTLQEEMVKDILSNAHIQNELEREFEKMKEDREV 964

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++ R PSD+HP++VV+ V +L ++L +V 
Sbjct: 965  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINTRLPSDLHPIKVVDGVKELSKKLVIVN 1023

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+++E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1024 GDDPLSKQAQENATLLFNIHLRSTLCSRRMIEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1083

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1084 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1143

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1144 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDFDV 1203

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
               +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1204 T--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1261

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1262 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1321

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1322 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1381

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1382 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1441

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPA 1447
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E  +P+ + GL  G  P 
Sbjct: 1442 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGLGVG-GPT 1498

Query: 1448 RSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSP 1507
                   P   G MSP         ++P      +P  G  A+SP+   G +P + G+SP
Sbjct: 1499 GMFFGSAPSPMGGMSPA--------MTPWNQGA-TPAYG--AWSPSVGSGMTPGAAGFSP 1547

Query: 1508 SSPG-YSPTSPGYSPT-------------------SPGYSPTSPGYSPTSPTYSPSSP-G 1546
            S+    S  SPGYSP                    SPG    SP YSPTSP Y P SP G
Sbjct: 1548 SAASDASGLSPGYSPAWSPTPGSPGSPGPSSPYIPSPG-GAMSPSYSPTSPAYEPRSPGG 1606

Query: 1547 YSP 1549
            Y+P
Sbjct: 1607 YTP 1609



 Score =  177 bits (450), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1852 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1911

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1912 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1962



 Score =  176 bits (447), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1852 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1911

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1912 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1962



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1852 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1911

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1912 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1962



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1852 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1911

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1912 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1962



 Score =  164 bits (415), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1852 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1910

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1911 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1962



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1852 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1911

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1912 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1962



 Score =  140 bits (352), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1852 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1899

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1900 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1944

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1945 GYSPTSPTYS 1954


>gi|68370162|ref|XP_682682.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Danio rerio]
          Length = 1972

 Score = 1794 bits (4647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 917/1634 (56%), Positives = 1164/1634 (71%), Gaps = 114/1634 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 16   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGN 75

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+  ++ ++R VCF CSK+L D ++ K K  L      P
Sbjct: 76   MTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANNPKIKDILTKSKGQP 135

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLK-KNKGGCGAQQPKLTIEGMKM 185
            + RL  + D CK K  CEGG+E+D    V   + E+  K K  GGCG  QP++   G+++
Sbjct: 136  RKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPESEDITKEKGHGGCGRYQPRIRRSGLEL 195

Query: 186  IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
             AE+K     N+D +      E+K  L+ ERV  + KRI+DE+  +LG++PKYARP+WMI
Sbjct: 196  YAEWK---HVNEDSQ------EKKILLSPERVHEIFKRIADEEDIILGMDPKYARPEWMI 246

Query: 246  LQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
            + VLP+PP  VRP+          DDLTH+LA I++ N  L+R E++GA AH+I+E  +L
Sbjct: 247  VTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHVIAEDVKL 306

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQFH+AT  DNELPG PRA Q+SGRP+KSI  RLK KEGR+RGNLMGKRVDFSARTVITP
Sbjct: 307  LQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITP 366

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP + IDQ+GVP SIA N+T+PE VTP+NI+RL+ELV  G    PG   AKYIIRD+G R
Sbjct: 367  DPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGDR 423

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
            +DLR+  K SD HL++GYKVERH+ DGD ++FNRQP+LHKMS+MGHR++I+P+STFRLNL
Sbjct: 424  IDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTFRLNL 483

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            SVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   R
Sbjct: 484  SVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVR 543

Query: 536  KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
            K TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT 
Sbjct: 544  KFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINAIRTH 603

Query: 596  AWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 651
            + H D  D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  R
Sbjct: 604  STHPDEEDSGPYKNISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITR 663

Query: 652  KFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711
             F  + Q +VN WLL    SIGIGD+IAD  T + I +TI KAK +V  +I++A +  LE
Sbjct: 664  LFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHNNELE 723

Query: 712  PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 771
            P PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV AGSKGS INISQ+ A
Sbjct: 724  PTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIA 783

Query: 772  CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 831
             VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREG
Sbjct: 784  VVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREG 843

Query: 832  LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL 891
            LIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q +
Sbjct: 844  LIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNM 903

Query: 892  DSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL 951
             +LK     F+K F+F+   E      + ++ + D+ T   ++   + E +K+  DR ++
Sbjct: 904  ATLKPSHKAFEKKFKFDYANERALRRTLQEDVVKDVMTNAHVQSSLEREFEKMREDR-EI 962

Query: 952  ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG 1011
               I  +GDS   LP NL R+IWNAQK F+++PR P+D++P  VV+ V +L ++L +V G
Sbjct: 963  LRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRAPTDLNPARVVDGVKELSKKLVIVNG 1022

Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
            +D LS +AQ+NATL FNI LRST  SKR+ +E RL+ EAF+W++GEIE++F QS+  PGE
Sbjct: 1023 DDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGE 1082

Query: 1072 MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKP 1131
            M+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTPSL+VFL  
Sbjct: 1083 MVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLG 1142

Query: 1132 GVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIA 1191
                  ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+ 
Sbjct: 1143 QAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDFDVT 1202

Query: 1192 PEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMN 1251
              +ISPWLLRIEL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIMN
Sbjct: 1203 --RISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN 1260

Query: 1252 DEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR------------------------ 1284
             +  K + ++E     +DDVFL+ IESNMLT+M L+                        
Sbjct: 1261 SDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIIT 1320

Query: 1285 ----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELR 1328
                            GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL 
Sbjct: 1321 EDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELY 1380

Query: 1329 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1388
             VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHGINR DTGP+M+CSFEETVD+L++A+
Sbjct: 1381 HVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEAS 1440

Query: 1389 VFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYM----EGLEF 1442
               ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ F
Sbjct: 1441 SHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMFF 1500

Query: 1443 GMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPG 1497
            G  P  SP+SG     TP++ G  +P Y        SP   +  +P  G   FSP+++  
Sbjct: 1501 GSAP--SPMSGMSPAMTPWNTG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAASD 1550

Query: 1498 YSPSSPGYSPS---SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1554
             S  SPGYSP+   +PG SP SPG  P SP Y P SPGY   +  +   SP YSPTSPAY
Sbjct: 1551 ASGFSPGYSPAWSPTPG-SPGSPG--PASP-YIP-SPGY--ITLHFGALSPNYSPTSPAY 1603

Query: 1555 SPTSP--SYSPTSP 1566
             P SP   Y+P SP
Sbjct: 1604 EPRSPGGGYTPQSP 1617



 Score =  173 bits (439), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 85/104 (81%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP YSPTSP+Y+PTSP YSPT
Sbjct: 1857 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1916

Query: 1642 SPSYSPTSPSYSPTSPSYSPTSP---AYSPTSPGYSPTSPSYSP 1682
            SP+YSPTSP YSPTSP+YSPTSP    YSPTSPGYSPTSP+YSP
Sbjct: 1917 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1960



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 93/104 (89%), Gaps = 3/104 (2%)

Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1857 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1916

Query: 1614 SPAYSPTSPAYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YSP
Sbjct: 1917 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1960



 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1857 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1916

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSP 1647
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YSP
Sbjct: 1917 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1960



 Score =  169 bits (429), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/104 (79%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1592
            Y+PTSP YSP+SP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1857 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1916

Query: 1593 SPSYSPTSPSYSPTSPAYSPTSP---AYSPTSPAYSPTSPSYSP 1633
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSP+YSP
Sbjct: 1917 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1960



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/104 (79%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1655
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1857 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1916

Query: 1656 SPSYSPTSPAYSPTSPGYSPTSP---SYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+Y+P
Sbjct: 1917 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1960



 Score =  168 bits (426), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/104 (79%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1857 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1916

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSP 1619
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YSP
Sbjct: 1917 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1960



 Score =  166 bits (421), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 82/107 (76%), Positives = 93/107 (86%), Gaps = 3/107 (2%)

Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1857 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1916

Query: 1663 SPAYSPTSPGYSPTSPSYSPTSP---TYSPTSPSYNPQSAKYSPSLA 1706
            SP YSPTSP YSPTSP+YSPTSP   TYSPTSP Y+P S  YSP+++
Sbjct: 1917 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAIS 1963



 Score =  165 bits (418), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/104 (78%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1498 YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT 1557
            Y+P+SP YSP+SP YSPTSP YSPTSP YSPT+P YSPTSPTYSP+SP Y+PTSP YSPT
Sbjct: 1857 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1916

Query: 1558 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1598
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YSP
Sbjct: 1917 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1960



 Score =  158 bits (400), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/105 (77%), Positives = 91/105 (86%), Gaps = 4/105 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSPTY+P+SP YSP
Sbjct: 1857 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSP 1915

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1591
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YSP
Sbjct: 1916 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1960



 Score =  150 bits (378), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 81/111 (72%), Positives = 89/111 (80%), Gaps = 10/111 (9%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP- 1703
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP+Y P S KYSP 
Sbjct: 1857 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1916

Query: 1704 SLAYSPSSPRLSPASPYSPTSPNYSPTS---SSYSPTSPSYSPSSPTYSPS 1751
            S  YSP+SP+      YSPTSP YSPTS   S+YSPTSP YSP+SPTYSP+
Sbjct: 1917 SPTYSPTSPK------YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPA 1961


>gi|395533542|ref|XP_003768816.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sarcophilus
            harrisii]
          Length = 1921

 Score = 1794 bits (4646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 915/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILGKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRTGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LI+P  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IADAKT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + +E + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEELVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VV+ V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVDGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            GEDPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GEDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGMSPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610


>gi|126309152|ref|XP_001364837.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Monodelphis domestica]
          Length = 1970

 Score = 1793 bits (4645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 915/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILGKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRTGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LI+P  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IADAKT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + +E + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEELVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VV+ V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVDGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            GEDPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GEDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGMSPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1853 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1911

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955


>gi|324120524|dbj|BAJ78653.1| RNA polymerase II largest subunit [Ephemera japonica]
          Length = 1660

 Score = 1793 bits (4644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 923/1696 (54%), Positives = 1179/1696 (69%), Gaps = 113/1696 (6%)

Query: 2    DTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGT 59
            D++ P  P     VR VQFGILSPDEIR+MSV +  I   ET E G+PK GGL DPR G 
Sbjct: 6    DSKAPLRP-----VRRVQFGILSPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGV 60

Query: 60   IDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH 119
            IDR  +C+TC  NM ECPGHFGH+EL+KP+FH+GF+K  + I+R VCF CSK+L    + 
Sbjct: 61   IDRNSRCQTCAGNMTECPGHFGHIELSKPVFHVGFIKQTIKILRCVCFYCSKMLVSPTNP 120

Query: 120  KFKQ-ALKIR-NPKNRLKKILDACKNKTKCEGGDEIDV---PGQDGEEPLKKNK----GG 170
            K K+  +K +  P+ RL  + D CK K  CEGGDE+D+   P ++ ++P   NK    GG
Sbjct: 121  KIKEIVMKTKGQPRKRLTFVYDLCKGKNICEGGDEMDLAKDPERNPDDPGGPNKKQGHGG 180

Query: 171  CGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQ 230
            CG  QP +   G+ + AE+K     N+D +      E+K  L+AERV  + K ISDE+C 
Sbjct: 181  CGRYQPNIRRAGLDLSAEWK---HANEDTQ------EKKIALSAERVYEIFKHISDEECF 231

Query: 231  LLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQE 280
            ++G++PKYARPDWM+  VLP+PP  VRP+          DDLTH+LA II+ N  L R E
Sbjct: 232  IMGMDPKYARPDWMVATVLPVPPLCVRPAVVMYGSARNQDDLTHKLADIIKSNNELARNE 291

Query: 281  RNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 340
            + GA AH++SE  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNL
Sbjct: 292  QAGAAAHVLSENTKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNL 351

Query: 341  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 400
            MGKRVDFSARTVITPDP + IDQ+GVP SIA NLT+PE VTP+N+E ++ELV  G    P
Sbjct: 352  MGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNLENMQELVRRGNSQYP 411

Query: 401  GKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 460
            G   AKYI+RD+G+R+DLRY  KSSD HL+ GY+VERH+ DGD V+FNRQP+LHKMS+MG
Sbjct: 412  G---AKYIVRDNGERIDLRYHPKSSDLHLQCGYRVERHIKDGDLVIFNRQPTLHKMSMMG 468

Query: 461  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
            HR+K++P+STFR+NLSVTSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N
Sbjct: 469  HRVKVLPWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQAN 528

Query: 521  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQV 580
            +PVMGIVQDTL   RK+T+RD FIEK+  MNIL++   +DGK+PQP ILKP+PLWTGKQ+
Sbjct: 529  KPVMGIVQDTLTAVRKMTRRDVFIEKEQMMNILLFLPIWDGKMPQPAILKPKPLWTGKQI 588

Query: 581  FNLIIPKQINLFRTAAWHADNDK----GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGS 636
            F+LIIP  +N+ RT + H D++       ++ GDT V +E GEL+ G LCKKTLGTS GS
Sbjct: 589  FSLIIPGNVNMIRTHSTHPDDENSGPYNWISPGDTKVMVEHGELVMGILCKKTLGTSAGS 648

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            L+H+   E+G +   +F G+ Q +VN WLL    SIGIGDTIAD  T   I   I KAK 
Sbjct: 649  LLHICMLELGHEECGRFYGNIQTVVNTWLLLEGHSIGIGDTIADPNTYIEIQKAIKKAKE 708

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
            +V  +I++A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV 
Sbjct: 709  DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 768

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
            AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GL
Sbjct: 769  AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 828

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
            TP EF+FHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  Y
Sbjct: 829  TPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRY 888

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDV 936
            GEDG+    +E Q L ++K+   EF++ +RF+   E        ++ + +L    ++   
Sbjct: 889  GEDGLCGETVEFQNLPTIKLANDEFERGYRFDPSNERHLRRVFTEDVVKELMGSADVISE 948

Query: 937  FDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVV 996
             + E + L+ DR  +  +   SGD    LP NL+R+IWNAQK F ++ R P+D+ P+ V+
Sbjct: 949  LEREWELLKKDRDSM-RQTFPSGDDKVVLPCNLERMIWNAQKIFHINKRLPTDLSPLSVI 1007

Query: 997  EAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIG 1056
            + V  L  +  +V GED LS +A +NATL F  L+RS   +K V  ++RL+ EAFEW++G
Sbjct: 1008 QGVQNLLSKCIIVAGEDRLSTQANENATLLFQCLVRSILCTKNVADKYRLSAEAFEWLVG 1067

Query: 1057 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1116
            EIE+RF Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN+
Sbjct: 1068 EIETRFQQAQCQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINI 1127

Query: 1117 AKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDV 1176
            +KK K PSL+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED 
Sbjct: 1128 SKKPKAPSLTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIGEDQ 1187

Query: 1177 EFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
            EFV  YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFN
Sbjct: 1188 EFVNIYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINLGFGDDLNCIFN 1245

Query: 1237 DDNADKLILRIRIMNDEAPKGELNDE-----SAEDDVFLKKIESNMLTEMALRGV----- 1286
            DDNA+KL+LRIRIMN  +  G+  D+       EDD+FL+ IE+NML++M L+G+     
Sbjct: 1246 DDNAEKLVLRIRIMNSTSEDGKFGDDEEQADKMEDDMFLRCIEANMLSDMTLQGIEAISK 1305

Query: 1287 -----------------------------------NLLAVMCHEDVDARRTTSNHLIEII 1311
                                               +L+ V+   DVD  RT SN + EI 
Sbjct: 1306 VYMHLPQTDSKKKIVVTDNGRFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIF 1365

Query: 1312 EVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP 1371
             VLGIEAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG 
Sbjct: 1366 SVLGIEAVRKSVEKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 1425

Query: 1372 MMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL 1431
            +MRCSFEETVD+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K+ IE+
Sbjct: 1426 LMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGAFDLLLDAEKCKHGIEI 1485

Query: 1432 QLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFS 1491
              P+++             ++G  ++ G  +P  + SP++  +P        Y    A+S
Sbjct: 1486 --PTHLGAGA---LAGAPGLAGGVFYSGSATPSSM-SPHM--TPWNQGGTPSYAS--AWS 1535

Query: 1492 PTSSPGYSPSSPGYSPS-SPGYSPTSPGYSPT-SPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            P    G +P  PG+SPS S   S  SP YS   SP   P SP  SP  P+ SP  P    
Sbjct: 1536 PGLGSGMTPGGPGFSPSGSSDASGLSPNYSSAWSP--QPGSPSASP-GPSMSPYIP---- 1588

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
             SPA    SP+YSP+SP+Y+P SPS +P+SP+YSPTSPS   TSPSYSPTSP Y P SP+
Sbjct: 1589 -SPA-GALSPNYSPSSPAYAPASPSLTPSSPNYSPTSPS-CLTSPSYSPTSPIY-PASPS 1644

Query: 1610 YSPTSPAYSPTSPAYS 1625
            YSPTSP +S  SP YS
Sbjct: 1645 YSPTSPGFSVASPGYS 1660



 Score =  100 bits (249), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/165 (49%), Positives = 102/165 (61%), Gaps = 20/165 (12%)

Query: 1534 SPTSPTYSPSSPGYSPT-SPAYSPTSPS-YSPTSPSYSPTSPS-YSPTSPSYSPTSPSYS 1590
            S  SP  +P + G +P+ + A+SP   S  +P  P +SP+  S  S  SP+YS ++ S  
Sbjct: 1513 SSMSPHMTPWNQGGTPSYASAWSPGLGSGMTPGGPGFSPSGSSDASGLSPNYS-SAWSPQ 1571

Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
            P SPS SP  PS SP  P     SPA    SP YSP+SP       +Y+P SPS +P+SP
Sbjct: 1572 PGSPSASP-GPSMSPYIP-----SPA-GALSPNYSPSSP-------AYAPASPSLTPSSP 1617

Query: 1651 SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN 1695
            +YSPTSPS   TSP+YSPTSP Y P SPSYSPTSP +S  SP Y+
Sbjct: 1618 NYSPTSPS-CLTSPSYSPTSPIY-PASPSYSPTSPGFSVASPGYS 1660



 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 73/165 (44%), Positives = 91/165 (55%), Gaps = 14/165 (8%)

Query: 1581 SYSPTSPSYSP-TSPSYSPTSPSYSPTSPAYSP-TSPAYSPTSPAYSPTSPS-YSPTSPS 1637
            S S T  S SP  +P     +PSY+    A+SP      +P  P +SP+  S  S  SP+
Sbjct: 1507 SGSATPSSMSPHMTPWNQGGTPSYAS---AWSPGLGSGMTPGGPGFSPSGSSDASGLSPN 1563

Query: 1638 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
            YS ++ S  P SPS SP  PS SP    Y P+  G    SP+YSP+SP Y+P SPS  P 
Sbjct: 1564 YS-SAWSPQPGSPSASP-GPSMSP----YIPSPAG--ALSPNYSPSSPAYAPASPSLTPS 1615

Query: 1698 SAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYS 1742
            S  YSP+     +SP  SP SP  P SP+YSPTS  +S  SP YS
Sbjct: 1616 SPNYSPTSPSCLTSPSYSPTSPIYPASPSYSPTSPGFSVASPGYS 1660



 Score = 80.9 bits (198), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/180 (38%), Positives = 96/180 (53%), Gaps = 39/180 (21%)

Query: 1611 SPTSPAYSPTSPAYSPT-SPSYSPTSPS-YSPTSPSYSPTSPS-YSPTSPSYSPTSPAYS 1667
            S  SP  +P +   +P+ + ++SP   S  +P  P +SP+  S  S  SP+YS    A+S
Sbjct: 1513 SSMSPHMTPWNQGGTPSYASAWSPGLGSGMTPGGPGFSPSGSSDASGLSPNYSS---AWS 1569

Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY 1727
            P      P SPS SP  P+ SP  PS         P+ A SP+         YSP+SP Y
Sbjct: 1570 P-----QPGSPSASP-GPSMSPYIPS---------PAGALSPN---------YSPSSPAY 1605

Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
            +P S S +P+SP+YSP+SP+   S         P YSP+SP Y  S  YSP++PG+S +S
Sbjct: 1606 APASPSLTPSSPNYSPTSPSCLTS---------PSYSPTSPIYPASPSYSPTSPGFSVAS 1656



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 72/125 (57%), Gaps = 11/125 (8%)

Query: 1674 SPTSPSYSP-TSPTYSPTSPSYNPQSAKYSPSLA--YSPSSPRLSPA--SPYSPTSPNYS 1728
            S T  S SP  +P     +PSY   ++ +SP L    +P  P  SP+  S  S  SPNYS
Sbjct: 1509 SATPSSMSPHMTPWNQGGTPSY---ASAWSPGLGSGMTPGGPGFSPSGSSDASGLSPNYS 1565

Query: 1729 PTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSS 1787
             ++ S  P SPS SP  P+ SP  P  AG  +P+YSPSSP Y+P++   +PS+P YSP+S
Sbjct: 1566 -SAWSPQPGSPSASPG-PSMSPYIPSPAGALSPNYSPSSPAYAPASPSLTPSSPNYSPTS 1623

Query: 1788 TSQYT 1792
             S  T
Sbjct: 1624 PSCLT 1628



 Score = 42.0 bits (97), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 27/111 (24%)

Query: 1701 YSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPS-YSPSSPTYSPSSPYNAGGG 1759
            YS S   S  SP ++P +     +P+Y+   S++SP   S  +P  P +SPS   +A G 
Sbjct: 1506 YSGSATPSSMSPHMTPWN--QGGTPSYA---SAWSPGLGSGMTPGGPGFSPSGSSDASGL 1560

Query: 1760 NPDYS------PSSPQYSP---------------SAGYSPSAPGYSPSSTS 1789
            +P+YS      P SP  SP               S  YSPS+P Y+P+S S
Sbjct: 1561 SPNYSSAWSPQPGSPSASPGPSMSPYIPSPAGALSPNYSPSSPAYAPASPS 1611


>gi|351701567|gb|EHB04486.1| DNA-directed RNA polymerase II subunit RPB1 [Heterocephalus glaber]
 gi|417406836|gb|JAA50059.1| Putative rna polymerase i large subunit [Desmodus rotundus]
          Length = 1970

 Score = 1792 bits (4642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 915/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFGILSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGILSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1853 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1911

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955


>gi|345800197|ref|XP_857844.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1 isoform 3 [Canis lupus familiaris]
          Length = 1970

 Score = 1792 bits (4642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1853 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1911

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955


>gi|402898581|ref|XP_003912299.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Papio anubis]
          Length = 1970

 Score = 1792 bits (4642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILSKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1853 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1911

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955


>gi|109488292|ref|XP_343923.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
            [Rattus norvegicus]
 gi|109491096|ref|XP_001079162.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Rattus norvegicus]
          Length = 1970

 Score = 1792 bits (4641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  176 bits (447), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 88/114 (77%), Positives = 97/114 (85%), Gaps = 3/114 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P+ +
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPEDS 1966



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1853 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1911

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  153 bits (387), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 83/123 (67%), Positives = 94/123 (76%), Gaps = 16/123 (13%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSP 1750
            SP+Y+P S KYSP+   SP+         YSPTSP      S+YSPTSP YSP+SPTYS 
Sbjct: 1913 SPTYSPTSPKYSPT---SPT---------YSPTSPK----GSTYSPTSPGYSPTSPTYSL 1956

Query: 1751 SSP 1753
            +SP
Sbjct: 1957 TSP 1959



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955


>gi|395836506|ref|XP_003791195.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Otolemur
            garnettii]
          Length = 1970

 Score = 1792 bits (4641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 910/1628 (55%), Positives = 1150/1628 (70%), Gaps = 128/1628 (7%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL++GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFEQMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPA 1447
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+              P 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEI--------------PT 1488

Query: 1448 RSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGM-----AFSPTSSPGYSPSS 1502
              PV G     GM   G   SP   +SP      +P+  G      A+SP+   G +P +
Sbjct: 1489 NIPVLGAAGPTGMFF-GSAPSPMGGISPA----MTPWNQGATPAYGAWSPSVGSGMTPGA 1543

Query: 1503 PGYSPSSPG-YSPTSPGYSPT-------------------SPGYSPTSPGYSPTSPTYSP 1542
             G+SPS+    S  SPGYSP                    SPG    SP YSPTSP Y P
Sbjct: 1544 AGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPG-GAMSPSYSPTSPAYEP 1602

Query: 1543 SSP-GYSP 1549
             SP GY+P
Sbjct: 1603 RSPGGYTP 1610



 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1853 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1911

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955


>gi|355568192|gb|EHH24473.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca mulatta]
 gi|355753712|gb|EHH57677.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca fascicularis]
          Length = 1629

 Score = 1792 bits (4641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 919/1631 (56%), Positives = 1161/1631 (71%), Gaps = 122/1631 (7%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILSKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYK----------VERHLNDGDFVLFNRQPSLHKMSIMGHRIK 464
            R+DLR+  K SD HL+ GYK          VERH+ DGD V+FNRQP+LHKMS+MGHR++
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKAPSQSAWIIGVERHMCDGDIVIFNRQPTLHKMSMMGHRVR 485

Query: 465  IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 524
            I+P+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVM
Sbjct: 486  ILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVM 545

Query: 525  GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLI 584
            GIVQDTL   RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LI
Sbjct: 546  GIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLI 605

Query: 585  IPKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHV 640
            IP  IN  RT + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+
Sbjct: 606  IPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHI 665

Query: 641  IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKN 700
             + E+G D  R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  
Sbjct: 666  SYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIE 725

Query: 701  LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760
            +I++A +  LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+K
Sbjct: 726  VIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAK 785

Query: 761  GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 820
            GS INISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP E
Sbjct: 786  GSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTE 845

Query: 821  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 880
            FFFHAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG
Sbjct: 846  FFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDG 905

Query: 881  MDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAE 940
            +    +E Q L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E
Sbjct: 906  LAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELERE 965

Query: 941  VQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
             +++  DR  L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V 
Sbjct: 966  FERMREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVK 1024

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
            +L ++L +V G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES
Sbjct: 1025 ELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 1084

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            +F Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK 
Sbjct: 1085 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKP 1144

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            KTPSL+VFL        ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V 
Sbjct: 1145 KTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVN 1204

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
             YYEMPD D+A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA
Sbjct: 1205 VYYEMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNA 1262

Query: 1241 DKLILRIRIMNDEAPKGELNDESAE---DDVFLKKIESNMLTEMALRG------------ 1285
            +KL+LRIRIMN +  K +  +E  +   DDVFL+ IESNMLT+M L+G            
Sbjct: 1263 EKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLP 1322

Query: 1286 ----------------------------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                        V+L+ V+  +DVD  RTTSN ++EI  VLGIE
Sbjct: 1323 QTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIE 1382

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            AVR+AL  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSF
Sbjct: 1383 AVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSF 1442

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPS 1435
            EETVD+L++AA   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P 
Sbjct: 1443 EETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPG 1502

Query: 1436 YME----GLEFGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVG 1486
                   G+ FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G
Sbjct: 1503 LGAAGPTGMFFGSAP--SPMGGISPAMTPWNQGA-TPAYG-----AWSPSVGSGMTP--G 1552

Query: 1487 GMAFSPTSSPGYSPSSPGYSPS------SPGYSPTSPGYSPTSPG--YSPTSPGYSPTSP 1538
               FSP+++   S  SPGYSP+      SPG    S  Y P SPG  YSPTSPGYSPTSP
Sbjct: 1553 AAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPGSTYSPTSPGYSPTSP 1611

Query: 1539 TYSPSSPGYSP 1549
            TYS +SP  SP
Sbjct: 1612 TYSLTSPAISP 1622



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 63/136 (46%), Gaps = 7/136 (5%)

Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPAYSP 1668
            Y    P   P   A  PT   +          SP+ +P +   +P   ++SP+     +P
Sbjct: 1492 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTP 1551

Query: 1669 TSPGYSPTSPS-YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY 1727
             + G+SP++ S  S  SP YSP             PS  Y PS     P S YSPTSP Y
Sbjct: 1552 GAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPS-----PGSTYSPTSPGY 1606

Query: 1728 SPTSSSYSPTSPSYSP 1743
            SPTS +YS TSP+ SP
Sbjct: 1607 SPTSPTYSLTSPAISP 1622



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 62/131 (47%), Gaps = 16/131 (12%)

Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS-YSP 1633
            Y    P+  P   +  PT   +          SPA +P +   +P   A+SP+  S  +P
Sbjct: 1492 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTP 1551

Query: 1634 TSPSYSPTSPS-YSPTSPSYSPT-------------SPSYSPT-SPAYSPTSPGYSPTSP 1678
             +  +SP++ S  S  SP YSP              S  Y P+    YSPTSPGYSPTSP
Sbjct: 1552 GAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGSTYSPTSPGYSPTSP 1611

Query: 1679 SYSPTSPTYSP 1689
            +YS TSP  SP
Sbjct: 1612 TYSLTSPAISP 1622



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 58/131 (44%), Gaps = 37/131 (28%)

Query: 1533 YSPTSPTYSPSSPGYSPT--------------SPAYSPTSPSYSPTSPSYSPTSPS-YSP 1577
            Y    PT  P      PT              SPA +P +   +P   ++SP+  S  +P
Sbjct: 1492 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTP 1551

Query: 1578 TSPSYSPTSPS-YSPTSPSYSPT-------------------SP--SYSPTSPAYSPTSP 1615
             +  +SP++ S  S  SP YSP                    SP  +YSPTSP YSPTSP
Sbjct: 1552 GAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGSTYSPTSPGYSPTSP 1611

Query: 1616 AYSPTSPAYSP 1626
             YS TSPA SP
Sbjct: 1612 TYSLTSPAISP 1622



 Score = 47.4 bits (111), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 63/139 (45%), Gaps = 30/139 (21%)

Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPS-- 1744
            Y    P+  P      P+  +  S+P     SP    SP  +P +   +P   ++SPS  
Sbjct: 1492 YGMEIPTNIPGLGAAGPTGMFFGSAP-----SPMGGISPAMTPWNQGATPAYGAWSPSVG 1546

Query: 1745 ------SPTYSPSSPYNAGGGNPDYSPS-------------SPQYSPSAG--YSPSAPGY 1783
                  +  +SPS+  +A G +P YSP+             S  Y PS G  YSP++PGY
Sbjct: 1547 SGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGSTYSPTSPGY 1606

Query: 1784 SPSS--TSQYTPQTNRDDS 1800
            SP+S   S  +P  + DDS
Sbjct: 1607 SPTSPTYSLTSPAISPDDS 1625


>gi|281185484|sp|P24928.2|RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit B1; AltName: Full=DNA-directed RNA
            polymerase II subunit A; AltName: Full=DNA-directed RNA
            polymerase III largest subunit; AltName:
            Full=RNA-directed RNA polymerase II subunit RPB1
          Length = 1970

 Score = 1791 bits (4640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1853 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1911

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955


>gi|4505939|ref|NP_000928.1| DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
 gi|345842509|ref|NP_001230931.1| polymerase (RNA) II (DNA directed) polypeptide A [Cricetulus griseus]
 gi|332251063|ref|XP_003274666.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Nomascus
            leucogenys]
 gi|403274932|ref|XP_003929214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Saimiri
            boliviensis boliviensis]
 gi|36124|emb|CAA45125.1| RNA polymerase II largest subunit [Homo sapiens]
 gi|2443336|dbj|BAA22377.1| RNA polymerase II largest subunit [Cricetulus griseus]
 gi|14328881|dbj|BAB60684.1| RNA polymerase II largest subunit [Cricetulus griseus]
 gi|119610587|gb|EAW90181.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
            CRA_a [Homo sapiens]
 gi|223460954|gb|AAI37232.1| Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Homo
            sapiens]
          Length = 1970

 Score = 1791 bits (4640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1853 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1911

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955


>gi|409082995|gb|EKM83352.1| hypothetical protein AGABI1DRAFT_65857 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1785

 Score = 1791 bits (4640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 940/1706 (55%), Positives = 1182/1706 (69%), Gaps = 117/1706 (6%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTID 61
            +F YS A + KV+ VQFGILSP+EI+  SV +IEH E  +    KPK GGL DPR+GTID
Sbjct: 5    QFAYSSAPIRKVKEVQFGILSPEEIKATSVAKIEHPEVMDEATHKPKMGGLMDPRMGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R  KC+TC   M+ECPGHFGH+ELA+P+FH GF+  V  I+  +C NC K+ AD  D  F
Sbjct: 65   RNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADTSDPNF 124

Query: 122  KQALK-IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD--GEEPLKKNKGGCGAQQPKL 178
               ++ IR  K RL  +   CK KT CE  D+I   G D   +EP KK  GGCG  QP++
Sbjct: 125  ADKIRHIRESKARLAVVWAHCKAKTVCEP-DDIKEDGVDPEADEP-KKGHGGCGHIQPQV 182

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              EG+K+  +YK  +  +D  ++L  P E         V  V K+++D D  LLGL+ +Y
Sbjct: 183  RKEGLKLFVQYKKTKDDDDPDKRLITPSE---------VYTVFKKMTDSDLHLLGLSDEY 233

Query: 239  ARPDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
            ARP+WMIL V           + +    +R  DDLT++L  II+ + N+RR E+ GAPAH
Sbjct: 234  ARPEWMILTVMPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDIIKASANVRRCEQEGAPAH 293

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            +ISEF QLLQFH+ATY DN++ G P+A Q+SGRP+K++ +RLK KEGR+RGNLMGKRVDF
Sbjct: 294  VISEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKALRARLKGKEGRLRGNLMGKRVDF 353

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVIT DP + +D++GVP SIA+NLT+PE VTPYNI  L+ELV  GP   PG   A+Y
Sbjct: 354  SARTVITGDPNLELDEVGVPKSIAMNLTFPERVTPYNITYLQELVRNGPTTYPG---ARY 410

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            ++RD G+R+DLRY  K +D  L+ G+ VERHL DGDFVLFNRQPSLHKMS+M HR+++MP
Sbjct: 411  VVRDTGERIDLRY-NKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMP 469

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            YSTFRLNLSVT PYNADFDGDEMNMHVPQS ETRAE+ ++  VP+ I+SPQ+N+PVMGIV
Sbjct: 470  YSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQVAWVPRQIISPQANKPVMGIV 529

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL G RK T RD F++ +   NIL+W  D+DG +P P ILKP+PLWTGKQ+ ++ IP+
Sbjct: 530  QDTLCGVRKFTLRDCFLDWNHVQNILLWVPDWDGTIPTPAILKPKPLWTGKQILSMTIPR 589

Query: 588  QINLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
             IN+ R+    + N   D G+L        IE GEL+ G + KKT+G + G L+HV++ E
Sbjct: 590  GINIHRSPDPKSSNPVFDDGML--------IENGELIFGIVDKKTVGATQGGLVHVVFRE 641

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
             GP+  R+     Q +VN+WL  N FSIGIGDTIAD KTM  I  TI + K  V  +I+ 
Sbjct: 642  KGPEVTRQLFTGLQRVVNFWLFHNGFSIGIGDTIADMKTMSYITQTIIERKAEVTKIIED 701

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            A    L+P+PG T+ ESFE+ V + LN ARD +G  AQK L E NN+K MV AGSKGSFI
Sbjct: 702  ATHDRLKPKPGMTIRESFESMVERQLNLARDTSGQYAQKHLKEDNNVKQMVVAGSKGSFI 761

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQM+ CVGQQ+VEG+RIPFGF  RTLPHFTKDD+ PESRGFVENSYLRGLTPQEFFFH
Sbjct: 762  NISQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFTPESRGFVENSYLRGLTPQEFFFH 821

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AM GREGLIDTAVKT+ETGYIQRRLVKA+ED+MV YDGTVRNSLGD+IQF+YGEDGMD  
Sbjct: 822  AMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMDGA 881

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEM-DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            +IE QT+++  +   EF   +R ++ D E      +LQ  IDD  +  EL+   D E ++
Sbjct: 882  FIEKQTIETFGLNDKEFQHNYRVDVTDPEGGFLPGVLQVGIDD--SSLELQQKLDEEYKQ 939

Query: 944  LEADRYQLATEIATSGDSSWP--LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
            L  DR  L   I     ++ P  LPVNL R++ NA + F +D R+PSD+ P  +V+AV +
Sbjct: 940  LVEDRKTLRYFIFPRTPTTQPHYLPVNLLRIVQNASQIFHIDRRKPSDLEPTYIVDAVRE 999

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L++RL VV GEDPLS EAQ+NATL F + LR+TFA++RVL++  LTREAF+WV+GE+E++
Sbjct: 1000 LEKRLVVVRGEDPLSYEAQENATLMFKMHLRATFATRRVLEKFHLTREAFDWVLGEVEAK 1059

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F QS+V PGEM G ++AQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA  IK
Sbjct: 1060 FNQSVVHPGEMCGTLSAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIK 1119

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPSL+V+L+P ++ +   AKNVQ  L YT+LR+VT A E+WYDPDP  TIIEED  FV+S
Sbjct: 1120 TPSLTVYLEPEISVSPTLAKNVQQELAYTSLRTVTAAVEIWYDPDPTSTIIEEDSVFVES 1179

Query: 1182 YYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
            ++ +PDE+   +    SPWLLR+E++R  M+D+KL M  VA +I   F  DL  I+++DN
Sbjct: 1180 FFAIPDEETESKLHLQSPWLLRLEMDRAKMIDRKLMMQYVANRIGDSFKTDLFVIWSEDN 1239

Query: 1240 ADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR--------------- 1284
            ++KLI+R R++     K +    S E+D+FL+++E+ ML  ++LR               
Sbjct: 1240 SEKLIIRCRVLG-SPDKDDEGYGSVEEDIFLRQLENTMLNSVSLRGVKGINRVFLTEADK 1298

Query: 1285 ----------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                  GVNL  VMC + VD  RT SN  +EI  VLGIEA R A
Sbjct: 1299 VMIRPDGTIETGKDKEWVLETDGVNLKTVMCIDGVDFTRTYSNSCVEIFNVLGIEAARAA 1358

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            ++ ELR VI FDGSYVNYRHLA+LCD MT+RG LMAITRHGINR DTG +MRCSFEETV+
Sbjct: 1359 IMKELRSVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRADTGALMRCSFEETVE 1418

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI---ELQLPSYMEG 1439
            +L++AA   E D   G+ EN+M GQ+AP+GTG   + L+ +MLK+AI    L + S +  
Sbjct: 1419 VLMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFEVALDIDMLKDAIVDHSLPVQSMLAA 1478

Query: 1440 -LEFGMTPARSPVSGTPY-------HDGMM-SPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
             LE GMTP +  V+ TPY       HDGM  S    F+P         + FS    G   
Sbjct: 1479 HLEDGMTPGQ--VAMTPYDTNSPMWHDGMFKSESASFTPLASNGGDEASSFSFMPFGQ-- 1534

Query: 1491 SPTSSPGYSPSSPGYSPSSP-GYSPTSPGYSPTSPGYSPTSP-GYSP------------T 1536
            SP  + G SP  PGYSPSSP  YSPTSP + P SP    TSP G SP            T
Sbjct: 1535 SPLGAGGMSPGGPGYSPSSPNAYSPTSPSFVPQSPYGGATSPFGTSPYATSPFIHRAGMT 1594

Query: 1537 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1596
            SPTYSP+SP  + TSPAYSPTSP YSPTSPS+SPTSP YSP SPS+SPTSP YSPTSPS+
Sbjct: 1595 SPTYSPTSPTLNLTSPAYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSF 1654

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSP 1622
            SP SP YSPTSP  SP+SP YSPTSP
Sbjct: 1655 SPASPRYSPTSPRMSPSSPKYSPTSP 1680



 Score =  154 bits (388), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 103/217 (47%), Positives = 128/217 (58%), Gaps = 28/217 (12%)

Query: 1544 SPGYSPTSPAYSPTSPS-----YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYS 1597
            +PG    +P Y   SP      +   S S++P + +    + S+S      SP  +   S
Sbjct: 1485 TPGQVAMTP-YDTNSPMWHDGMFKSESASFTPLASNGGDEASSFSFMPFGQSPLGAGGMS 1543

Query: 1598 PTSPSYSPTSP-AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
            P  P YSP+SP AYSPTSP++ P SP    TSP +  +  + SP       TSP+YSPTS
Sbjct: 1544 PGGPGYSPSSPNAYSPTSPSFVPQSPYGGATSP-FGTSPYATSPFIHRAGMTSPTYSPTS 1602

Query: 1657 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSP 1716
            P+ + TSPAYSPTSP YSPTSPS+SPTSP YSP SPS+             SP+SPR   
Sbjct: 1603 PTLNLTSPAYSPTSPRYSPTSPSFSPTSPRYSPQSPSF-------------SPTSPR--- 1646

Query: 1717 ASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
               YSPTSP++SP S  YSPTSP  SPSSP YSP+SP
Sbjct: 1647 ---YSPTSPSFSPASPRYSPTSPRMSPSSPKYSPTSP 1680



 Score =  132 bits (333), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/197 (45%), Positives = 118/197 (59%), Gaps = 26/197 (13%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT-SPAYSPTSPSYSPTSP-SYSPTSPSYS 1646
            +   S S++P + +    + ++S      SP  +   SP  P YSP+SP +YSPTSPS+ 
Sbjct: 1506 FKSESASFTPLASNGGDEASSFSFMPFGQSPLGAGGMSPGGPGYSPSSPNAYSPTSPSFV 1565

Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA 1706
            P SP    TSP +  +  A SP       TSP+YSPTSPT + TSP             A
Sbjct: 1566 PQSPYGGATSP-FGTSPYATSPFIHRAGMTSPTYSPTSPTLNLTSP-------------A 1611

Query: 1707 YSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSP 1765
            YSP+SPR SP SP +SPTSP YSP S S+SPTSP YSP+SP++SP+SP         YSP
Sbjct: 1612 YSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASP--------RYSP 1663

Query: 1766 SSPQYSPSA-GYSPSAP 1781
            +SP+ SPS+  YSP++P
Sbjct: 1664 TSPRMSPSSPKYSPTSP 1680



 Score =  120 bits (300), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/157 (52%), Positives = 99/157 (63%), Gaps = 28/157 (17%)

Query: 1639 SPTSPSYSPTSP-SYSPTSPSYSPTSPAYSPTSP-GYSP--TSP---SYSPTSPTYSPTS 1691
            SP  P YSP+SP +YSPTSPS+ P SP    TSP G SP  TSP       TSPTYSPTS
Sbjct: 1543 SPGGPGYSPSSPNAYSPTSPSFVPQSPYGGATSPFGTSPYATSPFIHRAGMTSPTYSPTS 1602

Query: 1692 PSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPS 1751
            P+ N                   SPA  YSPTSP YSPTS S+SPTSP YSP SP++SP+
Sbjct: 1603 PTLN-----------------LTSPA--YSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPT 1643

Query: 1752 SPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSS 1787
            SP      +P +SP+SP+YSP++   SPS+P YSP+S
Sbjct: 1644 SP-RYSPTSPSFSPASPRYSPTSPRMSPSSPKYSPTS 1679


>gi|133327|sp|P08775.3|RPB1_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit B1; AltName: Full=DNA-directed RNA
            polymerase II subunit A; AltName: Full=DNA-directed RNA
            polymerase III largest subunit
          Length = 1970

 Score = 1791 bits (4640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 87/111 (78%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+P SP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  174 bits (441), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 87/111 (78%), Positives = 94/111 (84%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+P SP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  174 bits (440), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 87/111 (78%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+P SP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  173 bits (438), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 87/115 (75%), Positives = 96/115 (83%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+P SP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  162 bits (411), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 82/108 (75%), Positives = 92/108 (85%), Gaps = 3/108 (2%)

Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1553
            +SP YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSPTSP 
Sbjct: 1856 ASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPT 1915

Query: 1554 YSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1916 YSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  160 bits (404), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 84/120 (70%), Positives = 93/120 (77%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+P SP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  151 bits (382), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/105 (75%), Positives = 89/105 (84%), Gaps = 4/105 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            +SPTS P YSP+SP YSP+SP YSPT+P YSPTSP YSPTSP Y+PTSP YSP+SP YSP
Sbjct: 1860 YSPTS-PKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSP 1918

Query: 1550 TSPAYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1591
            TSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1919 TSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  138 bits (347), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 88/130 (67%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+P SP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955


>gi|195996443|ref|XP_002108090.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
 gi|190588866|gb|EDV28888.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
          Length = 1784

 Score = 1791 bits (4640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 990/1781 (55%), Positives = 1222/1781 (68%), Gaps = 183/1781 (10%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVV--QIEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  +  VQFGILSPDEI++MSV    I + ET E GKPK  GL DPR G +DR  +
Sbjct: 9    STAPIRNINRVQFGILSPDEIKRMSVTPGGIRYAETYEAGKPKLCGLLDPRQGPVDRSSR 68

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC   + ECPGHFGH+ELA+P+FHIGF+   + I+R VCF CSK+L  + D K    +
Sbjct: 69   CQTCAGTVNECPGHFGHIELARPVFHIGFLVKSIKILRCVCFYCSKLLIKKSDPKVIDII 128

Query: 126  -KIRNP-KNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
             K R   + RL+ I D CK+K  C+  D  D  G D     KK   GCG  QP +   G+
Sbjct: 129  SKTRGRLRVRLQHIYDLCKSKNICQNDDGEDAEGLDE----KKEHSGCGRHQPIIRRNGL 184

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
            ++ AE+K   K N+D +      ERK  LTAERV  + KRISDED ++LG++P++ARPDW
Sbjct: 185  ELTAEWK---KINEDSQ------ERKINLTAERVYEIFKRISDEDSEVLGMDPRFARPDW 235

Query: 244  MILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            MI+  LP+PP  VRPS          DDLTH+LA II+ N NL+R E  GAPAH+I+E  
Sbjct: 236  MIITCLPVPPLHVRPSVVMHGSARSQDDLTHKLADIIKANNNLQRNESCGAPAHVITEDT 295

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
            ++LQFH+ T  DNE+PG P+A Q+SGRP+KSI  RLK KEGRIRGNLMGKRVDFSARTVI
Sbjct: 296  RMLQFHVTTLTDNEVPGMPKAMQKSGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVI 355

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            TPD  + IDQ+GVP SIA  L+YPE VTP NI+R+  LV  GP   PG   AKY+IR+ G
Sbjct: 356  TPDSNLEIDQVGVPRSIAQTLSYPEIVTPLNIDRMYVLVRRGPDHYPG---AKYVIRESG 412

Query: 414  QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
            +R++L++     D  L  G KVERH+ + D ++FNRQP+LHKMS+MGHR++I+P+STFRL
Sbjct: 413  ERINLKFRASRDDLTLHFGDKVERHIQNDDIIVFNRQPTLHKMSMMGHRVRILPWSTFRL 472

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NLSVT+PYNADFDGDEMN+HVPQS E+RAE+ E+ MVP+ IV+PQSN+PVMGIVQD+L  
Sbjct: 473  NLSVTTPYNADFDGDEMNLHVPQSLESRAEITEICMVPRQIVTPQSNKPVMGIVQDSLTA 532

Query: 534  CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
             RK T RD F+EK+V MN+LMW  +++GK+PQP IL+P+ LWTGKQ+F+LIIP  +NL R
Sbjct: 533  VRKFTMRDVFLEKEVVMNLLMWLPNWNGKMPQPAILRPKELWTGKQIFSLIIPGNVNLIR 592

Query: 594  TAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
            T + H D+ DKG    ++ GDT V IE GE++SG LCK+TLGTS+GSL+HVI+ E+G + 
Sbjct: 593  THSTHPDDEDKGPYKFISPGDTKVLIEHGEVISGILCKRTLGTSSGSLVHVIFNELGHEV 652

Query: 650  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
            AR+F G+ Q +VN WLL    SIGIGD+IAD  T + I  TI KAK +V  +I++A +  
Sbjct: 653  ARQFYGNIQTVVNNWLLIEGHSIGIGDSIADEATYQDIQSTILKAKQDVVEVIEKAHNDE 712

Query: 710  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
            LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLS  NN KAMV AGSKGS INISQ+
Sbjct: 713  LEPTPGNTLRKTFENQVNRILNDARDKTGSSAQKSLSNFNNFKAMVVAGSKGSKINISQV 772

Query: 770  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
             A VGQQNVEGKRIPFGF  RTLPHF +DDYGPESRGFVENSYL GLTP EFFFHAMGGR
Sbjct: 773  IAVVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPTEFFFHAMGGR 832

Query: 830  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
            EGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRN+   +IQ  YGEDG+D   IE Q
Sbjct: 833  EGLIDTAVKTAETGYIQRRLIKAMEGVMVHYDGTVRNANMQLIQLCYGEDGLDGSAIEFQ 892

Query: 890  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRY 949
             + SLK+  + F + FRF++  E     Y+    +  + T  E+++   +E ++L  DR 
Sbjct: 893  DMPSLKLSHTGFQRRFRFDIQNEKRLKQYLHGNIVRSIITDAEVKEKLQSEFEQLSKDRN 952

Query: 950  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1009
             + + I  +GDS   LPVNL RLIWNAQK F VDPR+ SD+HPM+V++ V +L  +L +V
Sbjct: 953  AVRS-ILQNGDSRVALPVNLNRLIWNAQKIFHVDPRKSSDLHPMKVIDDVCELSRKLVIV 1011

Query: 1010 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1069
             GED +S +AQ+NATL FNILLRS  +SKRV +E+ LT EAF+W+IGE++         P
Sbjct: 1012 HGEDRISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDWLIGEVQ---------P 1062

Query: 1070 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1129
            GEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+KK KTPSL+V L
Sbjct: 1063 GEMVGPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVIL 1122

Query: 1130 KPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDED 1189
                    E+AK+V C LE+TTLR VT  T ++YDP+P  T+I ED EFV +YYEMP  D
Sbjct: 1123 TGPAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPNPKNTVISEDQEFVNAYYEMP--D 1180

Query: 1190 IAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI 1249
              P ++SPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNA+KLILRIRI
Sbjct: 1181 FEPSQLSPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGEDLNCIFNDDNAEKLILRIRI 1240

Query: 1250 MNDEAPKGELNDES---AEDDVFLKKIESNMLTEMALR---------------------- 1284
            +N++  +G   DE     +DDVFL+ IESNML++M L+                      
Sbjct: 1241 VNNDNKEGVDRDEQWDRMDDDVFLRCIESNMLSDMTLQGIEQISKVYMHLPLQDSKKRMI 1300

Query: 1285 ------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDE 1326
                              GVNL  V+  +DVDA ++TSN ++EI  VLGIEAVR+A+  E
Sbjct: 1301 INEEGEYKAIQEWILETDGVNLQKVLSVKDVDAVKSTSNDIVEIFSVLGIEAVRKAVEKE 1360

Query: 1327 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1386
            +  VISFDGSYVNYRHLA+LCD MT RGHLMAITRHGINR + G +MRCSFEETVDIL+D
Sbjct: 1361 MNHVISFDGSYVNYRHLALLCDVMTCRGHLMAITRHGINRQEVGALMRCSFEETVDILMD 1420

Query: 1387 AAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--------QLPSYME 1438
            AA  +E+DYLRGV+ENIMLGQL+ IGTG   L L+ E  K+ +E+         +     
Sbjct: 1421 AAFHSETDYLRGVSENIMLGQLSKIGTGCFDLLLDPEKCKDGMEIPANVPVAGMINGVGA 1480

Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGY---LFSPNLRLSPVTDAQFSPYVGGMAFSPTSS 1495
            G+ +G     SP   TP+   + +P Y                A FSP       S  S 
Sbjct: 1481 GVFYGDGAGMSP-QMTPWDSSLTTPSYEGPYTPGMGGGMTPGAAGFSP-------SGASE 1532

Query: 1496 PGYSPSSPGYSPSSPGY----------------SPTS----------------------P 1517
            P +SP+S  YSP+                    SPT                        
Sbjct: 1533 PSFSPAS--YSPNWSPGPAASPGSPGPSSPYMQSPTDITFYVAFQSIILTVESKLLTDFS 1590

Query: 1518 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP------------------ 1559
             YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+YSPTSP                  
Sbjct: 1591 KYSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPTSPSYSPTSPSYSP 1650

Query: 1560 -----------------SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
                             SYSPTSP YSPTSP YSPTSPSYSPTSPSYSPTSPSYSPTSPS
Sbjct: 1651 TSPRYSPTSPSYSPTSPSYSPTSPKYSPTSPRYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1710

Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
            YSPTSP+YSPTSP YSPTSP+YSPTSP YSPTSPSYSPTSP
Sbjct: 1711 YSPTSPSYSPTSPRYSPTSPSYSPTSPRYSPTSPSYSPTSP 1751



 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 61/150 (40%), Positives = 77/150 (51%), Gaps = 21/150 (14%)

Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS---PSYSPTSPAYSPTSPGYSPTSPSYS 1681
            S T+PSY    P         +P +  +SP+    PS+SP S  YSP        SP   
Sbjct: 1500 SLTTPSYE--GPYTPGMGGGMTPGAAGFSPSGASEPSFSPAS--YSPNWSPGPAASPGSP 1555

Query: 1682 PTSPTY--SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
              S  Y  SPT  ++         S+  +  S  L+  S YSPTSP+YSPTS  YSPTSP
Sbjct: 1556 GPSSPYMQSPTDITFYVAFQ----SIILTVESKLLTDFSKYSPTSPSYSPTSPRYSPTSP 1611

Query: 1740 SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQ 1769
            SYSP+SP YSP+S        P YSP+SP+
Sbjct: 1612 SYSPTSPRYSPTS--------PSYSPTSPR 1633


>gi|329663165|ref|NP_001193242.1| DNA-directed RNA polymerase II subunit RPB1 [Bos taurus]
          Length = 1970

 Score = 1791 bits (4640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1853 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1911

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  153 bits (387), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 82/120 (68%), Positives = 91/120 (75%), Gaps = 9/120 (7%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSP 1750
            SP+Y+P S KYSP+      SP  SP SP   T   YSPTS  YSPTSP+YS +SP  SP
Sbjct: 1913 SPTYSPTSPKYSPT------SPTYSPTSPKGST---YSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955


>gi|332847192|ref|XP_511300.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Pan
            troglodytes]
          Length = 1907

 Score = 1791 bits (4639), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1620 (56%), Positives = 1155/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K    +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMXQEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610


>gi|2145091|gb|AAB58418.1| RNA polymerase II largest subunit [Mus musculus]
          Length = 1966

 Score = 1791 bits (4639), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score =  174 bits (441), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 87/110 (79%), Positives = 93/110 (84%), Gaps = 3/110 (2%)

Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
            Y+P SP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1642 SPSYSPTSPSYSPTSPSYSPTSP---AYSPTSPGYSPTSPSYSPTSPTYS 1688
            SP+YSPTSP YSPTSP+YSPTSP    YSPTSPGYSPTSP+YS TSP  S
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAIS 1962



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 92/108 (85%), Gaps = 3/108 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+P SP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPS 1693
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPA 1960



 Score =  157 bits (397), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 83/119 (69%), Positives = 92/119 (77%), Gaps = 9/119 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+P SP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYS 1742
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ S
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAIS 1962



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/126 (65%), Positives = 93/126 (73%), Gaps = 22/126 (17%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
            Y+P SP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS---SSYSPTSPSYSPSSPT 1747
            SP+Y             SP+SP+      YSPTSP YSPTS   S+YSPTSP YSP+SPT
Sbjct: 1913 SPTY-------------SPTSPK------YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPT 1953

Query: 1748 YSPSSP 1753
            YS +SP
Sbjct: 1954 YSLTSP 1959



 Score =  138 bits (347), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 88/130 (67%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+P SP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955


>gi|395748505|ref|XP_002827010.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1 [Pongo abelii]
          Length = 1967

 Score = 1791 bits (4638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score =  176 bits (447), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1850 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1909

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1910 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1960



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1850 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1909

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1910 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1960



 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1850 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1909

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1910 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1960



 Score =  174 bits (441), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1850 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1909

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1910 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1960



 Score =  163 bits (412), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1850 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1908

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1909 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1960



 Score =  161 bits (407), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1850 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1909

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1910 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1960



 Score =  121 bits (303), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 75/141 (53%), Positives = 93/141 (65%), Gaps = 29/141 (20%)

Query: 1673 YSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSS 1732
            Y+PTSP YSPTSP YSPTSP Y+P S        YSP++P+      YSPTSP YSPTS 
Sbjct: 1850 YTPTSPKYSPTSPKYSPTSPKYSPTSP------TYSPTTPK------YSPTSPTYSPTSP 1897

Query: 1733 SYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS----AGYSPSAPGYSPSS- 1787
             Y+PTSP YSP+SPTYSP+SP         YSP+SP YSP+    + YSP++PGYSP+S 
Sbjct: 1898 VYTPTSPKYSPTSPTYSPTSP--------KYSPTSPTYSPTSPKGSTYSPTSPGYSPTSP 1949

Query: 1788 -TSQYTPQTNRDDSTTKDDKN 1807
              S  +P  + DDS   D++N
Sbjct: 1950 TYSLTSPAISPDDS---DEEN 1967



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 32/135 (23%)

Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPS-- 1744
            Y    P+  P      P+  +  S+P     SP    SP  +P +   +P   ++SPS  
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAP-----SPMGGISPAMTPWNQGATPAYGAWSPSVG 1536

Query: 1745 ------SPTYSPSSPYNAGGGNPDYSPS-------------SPQYSPSAG------YSPS 1779
                  +  +SPS+  +A G +P YSP+             S  Y PS G      YSP+
Sbjct: 1537 SGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPT 1596

Query: 1780 APGYSPSSTSQYTPQ 1794
            +P Y P S   YTPQ
Sbjct: 1597 SPAYEPRSPGGYTPQ 1611


>gi|301778185|ref|XP_002924473.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Ailuropoda melanoleuca]
          Length = 1970

 Score = 1791 bits (4638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 912/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP +LKPRPLWTGKQ+F+LI+P  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAVLKPRPLWTGKQIFSLIVPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1853 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1911

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955


>gi|432105605|gb|ELK31799.1| DNA-directed RNA polymerase II subunit RPB1 [Myotis davidii]
          Length = 1970

 Score = 1791 bits (4638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1620 (56%), Positives = 1155/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V  L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKDLSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1853 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1911

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955


>gi|344290440|ref|XP_003416946.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Loxodonta
            africana]
          Length = 1970

 Score = 1790 bits (4637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNLG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1853 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1911

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955


>gi|290983563|ref|XP_002674498.1| RNA polymerase II [Naegleria gruberi]
 gi|284088088|gb|EFC41754.1| RNA polymerase II [Naegleria gruberi]
          Length = 1757

 Score = 1789 bits (4633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 926/1697 (54%), Positives = 1189/1697 (70%), Gaps = 142/1697 (8%)

Query: 31   MSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMF 90
            MSV ++ H ET E+GKPK  GL D R+GTID  + C TC  N  ECPGHFGH+ +  P+F
Sbjct: 1    MSVCEVLHAETQEKGKPKESGLMDLRMGTIDHHLSCLTCGGNATECPGHFGHVRI-HPVF 59

Query: 91   HIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKC--E 148
            ++ F+ TV+ +++SVC +C K+LAD+   +FK+A K  N + R K+++D C+ K KC  E
Sbjct: 60   NVLFINTVVKVLQSVCIHCGKLLADKSSLQFKKASKFVNRRKRFKEMIDLCR-KDKCIIE 118

Query: 149  GGDEIDVPGQDGE-EPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVE 207
             G++ +   Q+   +P  + + GCG  QPK++ +G+K+ AEYK        QE       
Sbjct: 119  TGNKENEQNQEANIDPTFQPRNGCGGLQPKISRDGLKIFAEYKKDTSAEAKQELT----- 173

Query: 208  RKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS-------- 259
             KQ LTAER L + KRI  ED +LLG +   ARP+WMIL  LPIPPP VRPS        
Sbjct: 174  -KQELTAERALQIFKRIPAEDLELLGFDKDNARPEWMILTCLPIPPPQVRPSVHHGSADR 232

Query: 260  --DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQR 317
              DDLTH+LA II+ N  +++ E++G P H + E  ++LQ+H ATY +NE PG P AT +
Sbjct: 233  SEDDLTHKLADIIKANAAIQKNEKSGTPLHQMEEMVRMLQYHCATYVNNEYPGVPTATTK 292

Query: 318  SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYP 377
            SGRP+KSI  RLK KEGR+RGNLMGKRVDFSARTVIT DP I+IDQ+GVP ++A N+T P
Sbjct: 293  SGRPLKSIRQRLKGKEGRVRGNLMGKRVDFSARTVITADPNIDIDQVGVPRTVASNMTVP 352

Query: 378  ETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK-KSSDH-HLELGYKV 435
            E VTP+N ERL ELV  GP   PG   AKY+IR+DG R+DLR+   K++D   LE GYKV
Sbjct: 353  EIVTPFNFERLNELVTNGPLTYPG---AKYVIREDGTRIDLRFASGKANDQIQLEYGYKV 409

Query: 436  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 495
            ERHL DGD +LFNRQPSLHKMS+MGHRIK+MPYSTFR+NLSVT+PYNADFDGDEMN+HVP
Sbjct: 410  ERHLQDGDVILFNRQPSLHKMSMMGHRIKVMPYSTFRMNLSVTTPYNADFDGDEMNLHVP 469

Query: 496  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 555
            QS +T+AE+LELMMVP+ I++PQSNRPV+ +VQDTLL   K+T+RD FI KD+ MN LM 
Sbjct: 470  QSLQTKAELLELMMVPRNIITPQSNRPVIALVQDTLLAASKLTRRDVFIAKDLMMNCLMH 529

Query: 556  WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD--NDKGILTAG---- 609
              DFDGK+P P ILKP+PLWTGKQ+F  ++PK +NL  T++ H D  + K  L       
Sbjct: 530  LIDFDGKLPVPAILKPKPLWTGKQLFTFLLPK-VNLENTSSTHEDLTDKKDHLDHDIPEF 588

Query: 610  DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
            DT V I++GEL+SG L KK+LG+S GSLIH+I  E G +  +KFLG  Q ++N+WL+   
Sbjct: 589  DTKVLIDRGELVSGVLDKKSLGSSHGSLIHIIVNEKGVNEGKKFLGQCQRVINHWLINRG 648

Query: 670  FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
            FSIGIGDTIAD  TME I +TI KA+ +VK ++K AQ+  L  E GRT+ +SFEN+VN+V
Sbjct: 649  FSIGIGDTIADKATMEQIEETIRKAEKDVKLIVKDAQEGKLRAEAGRTIQQSFENQVNKV 708

Query: 730  LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
            LN AR++AG+ A+KSL + NN+K+MVTAGSKGS+INISQ+ ACVGQQNVEGKRIP+GF +
Sbjct: 709  LNKAREDAGNKAKKSLKDDNNIKSMVTAGSKGSYINISQIIACVGQQNVEGKRIPYGFRN 768

Query: 790  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 849
            RTLPHF +DD+GPESRGFV NSYLRGLTPQEFFFH MGGREGLIDTAVKTSETGYIQRRL
Sbjct: 769  RTLPHFAQDDHGPESRGFVANSYLRGLTPQEFFFHTMGGREGLIDTAVKTSETGYIQRRL 828

Query: 850  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE- 908
            +KAMEDIMVKYDGTVR++ G+V+QFLYGEDGMD+  +ESQ++D + +  ++F   + +  
Sbjct: 829  IKAMEDIMVKYDGTVRDAQGNVVQFLYGEDGMDAHKVESQSIDIMNLSDAKFQDKYWYNS 888

Query: 909  ---------------------MDEENWNPNYMLQEYIDDLKT-IKELRDVFDAEVQKLEA 946
                                 + +E++    +  E + D  T + ++R+    E + L  
Sbjct: 889  LGSSPSFTNPTESSVSMPSGGILKESFISTKVYDEILKDPATYLSKVRE----EYKTLME 944

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPR--RPSDMHPMEVVEAVDKLQE 1004
            DR+ L TEI  + ++   +PVNLKR+I NAQK + + P   +PSDM+P+ V+E + KL +
Sbjct: 945  DRHILRTEIFPNAENKIVMPVNLKRIIKNAQKEYGIHPSIGKPSDMNPIYVIEKIKKLCD 1004

Query: 1005 RLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
             L V+ G D LS EAQ NATL F++ LRSTF+SK VLKE  LT+EAF++++GEI  RF  
Sbjct: 1005 DLVVIKGTDELSTEAQTNATLLFSMFLRSTFSSKVVLKELCLTQEAFDFLVGEIRMRFHN 1064

Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS 1124
             L  PGEM+G VAAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+E++NVAK IKTP 
Sbjct: 1065 CLAQPGEMVGSVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKELLNVAKNIKTPG 1124

Query: 1125 LSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
            L+++L        E+AK V+  LEYTTL  VT AT + YDP+P  ++IEED EF++   E
Sbjct: 1125 LTIYLNNEYIGDFEKAKMVKEDLEYTTLGHVTAATSIVYDPEPANSVIEEDREFIEELLE 1184

Query: 1185 MPDEDIAPEK--ISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADK 1242
               +    +   ++PW LR EL++ MM D  L+MA VA+KI +EF +D+TC ++DDNADK
Sbjct: 1185 ELKDTAVLDSTTLNPWSLRFELDKMMMSD-TLTMAQVAKKIQEEFQNDITCFYSDDNADK 1243

Query: 1243 LILRIRIMNDEA-----------PKGELNDESAEDDV------FLKKIESNMLTEMALR- 1284
            LIL +RI  D+            P  E+  +  E+D+      FL+++ESNML E+AL+ 
Sbjct: 1244 LILVVRIHKDDKEKEKDAQVAKDPSDEVLRKLEEEDIENSTVEFLRRLESNMLNELALKG 1303

Query: 1285 ----------------------------------GVNLLAVMCHEDVDARRTTSNHLIEI 1310
                                              G NLLAV+ H  VD   TTSN + EI
Sbjct: 1304 YKDLKKVFLREENDKKVFSSSGVATVKQWVLDTEGCNLLAVLSHPYVDHTITTSNDVNEI 1363

Query: 1311 IEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG 1370
            ++VLGIEA R AL+ E+R VI FDGSYVNYRHLAILCD MT+RG LMAITRHGINR+DTG
Sbjct: 1364 LDVLGIEACRNALMREMRKVIEFDGSYVNYRHLAILCDVMTHRGGLMAITRHGINRSDTG 1423

Query: 1371 PMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIE 1430
            P+MRCSFEETV+IL++AA FA++D L+GV+ N+M+GQLAPIGTG   LYL++E+LK A+ 
Sbjct: 1424 PLMRCSFEETVEILIEAATFADTDTLKGVSANVMVGQLAPIGTGCFGLYLDEELLKQAVA 1483

Query: 1431 LQLPSY------MEGLEFGMTPARSPVSGTPYHDGMMSPGY----------LFSPNLRL- 1473
            ++ PS+      M G     TP  +    TPYH G+ +P +            +P  R  
Sbjct: 1484 VK-PSFVTETKSMYGSLGATTPYHTSGLATPYHGGVATPYHGGASSPWTQGAMTPLGRTP 1542

Query: 1474 SPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG-YSPTSPGYSPTSPG 1532
            SP     FSP     AFSP +S   SP+SPG+     GYSP+SPG YSPTSP YSP+SP 
Sbjct: 1543 SPEYQGGFSPSPYNSAFSPVAS---SPTSPGH---QGGYSPSSPGNYSPTSPAYSPSSPN 1596

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1592
            YSPTSP YSP+SP YSPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+YSP+SP+YSPT
Sbjct: 1597 YSPTSPAYSPTSPNYSPTSPAYSPTSPNYSPTSPAYSPTSPAYSPTSPNYSPSSPAYSPT 1656

Query: 1593 SPSYSPTSPSYSPTSPA 1609
            SP  +     YSP+SPA
Sbjct: 1657 SPRATSPGAGYSPSSPA 1673



 Score =  140 bits (353), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 101/159 (63%), Gaps = 39/159 (24%)

Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            SP + ++SP + S  PTSP +      YSP+SP +YSPTSPAYSP+SP YSPTSP+YSPT
Sbjct: 1553 SPYNSAFSPVASS--PTSPGHQG---GYSPSSPGNYSPTSPAYSPSSPNYSPTSPAYSPT 1607

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SP YSPTSP             AYSP+SP       YSPTSP YSPTS +YSPTSP+YSP
Sbjct: 1608 SPNYSPTSP-------------AYSPTSPN------YSPTSPAYSPTSPAYSPTSPNYSP 1648

Query: 1744 SSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPG 1782
            SSP YSP+SP                 SP AGYSPS+P 
Sbjct: 1649 SSPAYSPTSPRAT--------------SPGAGYSPSSPA 1673



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 78/113 (69%), Gaps = 17/113 (15%)

Query: 1684 SPTYSPT-SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP-NYSPTSSSYSPTSPSY 1741
            SP Y    SPS  P ++ +SP +A SP+SP       YSP+SP NYSPTS +YSP+SP+Y
Sbjct: 1543 SPEYQGGFSPS--PYNSAFSP-VASSPTSP--GHQGGYSPSSPGNYSPTSPAYSPSSPNY 1597

Query: 1742 SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTP 1793
            SP+SP YSP+SP        +YSP+SP YSP++  YSP++P YSP+S + Y+P
Sbjct: 1598 SPTSPAYSPTSP--------NYSPTSPAYSPTSPNYSPTSPAYSPTSPA-YSP 1641


>gi|426383939|ref|XP_004058534.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Gorilla gorilla gorilla]
          Length = 1921

 Score = 1789 bits (4633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610


>gi|2443334|dbj|BAA22376.1| RNA polymerase II largest subunit [Cricetulus griseus]
          Length = 1970

 Score = 1788 bits (4632), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 913/1620 (56%), Positives = 1155/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+H ++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHSIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1853 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1911

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955


>gi|426238812|ref|XP_004013338.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Ovis aries]
          Length = 1897

 Score = 1788 bits (4630), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score = 53.9 bits (128), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 104/149 (69%), Gaps = 16/149 (10%)

Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSP 1689
            +YSPTSP+Y+PTSPSYSPTSPSYSPTSP+Y+PTSP YSPTSP YSPTSPSYSPTSP+YSP
Sbjct: 1747 NYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSP 1806

Query: 1690 TSPSYNPQSAKYSPSL----------------AYSPSSPRLSPASPYSPTSPNYSPTSSS 1733
            +SP Y PQS  Y+PS                     S      +  Y+PTSP YSPTS  
Sbjct: 1807 SSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPK 1866

Query: 1734 YSPTSPSYSPSSPTYSPSSPYNAGGGNPD 1762
            YSPTSP YSP+SPTYS +SP  + G + D
Sbjct: 1867 YSPTSPKYSPTSPTYSLTSPAISPGDSDD 1895


>gi|380793277|gb|AFE68514.1| DNA-directed RNA polymerase II subunit RPB1, partial [Macaca mulatta]
          Length = 1658

 Score = 1788 bits (4630), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILSKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 14/129 (10%)

Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT-SPAYSP 1619
            Y    P+  P   +  PT   +          SP+ +P +   +P   A+SP+     +P
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTP 1541

Query: 1620 TSPAYSPTSPS-YSPTSPSYSPT------SPSYSPTSPSYSPT-----SPSYSPTSPAYS 1667
             +  +SP++ S  S  SP YSP       SP     S  Y P+     SPSYSPTSPAY 
Sbjct: 1542 GAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYE 1601

Query: 1668 PTSP-GYSP 1675
            P SP GY+P
Sbjct: 1602 PRSPGGYTP 1610



 Score = 50.4 bits (119), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 14/129 (10%)

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 1591
            Y    PT  P      PT   +          SP+ +P +   +P   ++SP+  S  +P
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTP 1541

Query: 1592 TSPSYSPTSPS-YSPTSPAYSPT------SPAYSPTSPAYSPT-----SPSYSPTSPSYS 1639
             +  +SP++ S  S  SP YSP       SP     S  Y P+     SPSYSPTSP+Y 
Sbjct: 1542 GAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYE 1601

Query: 1640 PTSP-SYSP 1647
            P SP  Y+P
Sbjct: 1602 PRSPGGYTP 1610



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 61/138 (44%), Gaps = 16/138 (11%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
            Y    P+  P   +  PT   +          SPA +P + G +P   ++SP+       
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPS------V 1535

Query: 1691 SPSYNPQSAKYSPSLAYSPS--SPRLSPASPYSPTSPNYSPTSSSYSPT-----SPSYSP 1743
                 P +A +SPS A   S  SP  SPA   +P SP     SS Y P+     SPSYSP
Sbjct: 1536 GSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSP 1595

Query: 1744 SSPTYSPSSPYNAGGGNP 1761
            +SP Y P SP   GG  P
Sbjct: 1596 TSPAYEPRSP---GGYTP 1610



 Score = 48.1 bits (113), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 32/135 (23%)

Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPS-- 1744
            Y    P+  P      P+  +  S+P     SP    SP  +P +   +P   ++SPS  
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAP-----SPMGGISPAMTPWNQGATPAYGAWSPSVG 1536

Query: 1745 ------SPTYSPSSPYNAGGGNPDYSPS-------------SPQYSPSAG------YSPS 1779
                  +  +SPS+  +A G +P YSP+             S  Y PS G      YSP+
Sbjct: 1537 SGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPT 1596

Query: 1780 APGYSPSSTSQYTPQ 1794
            +P Y P S   YTPQ
Sbjct: 1597 SPAYEPRSPGGYTPQ 1611



 Score = 47.4 bits (111), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 4/130 (3%)

Query: 1617 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT-SPGYSP 1675
            Y    P   P   +  PT   +          SP+ +P +   +P   A+SP+   G +P
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTP 1541

Query: 1676 TSPSYSPTSPT-YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSY 1734
             +  +SP++ +  S  SP Y+P  +    S      S    P SP    SP+YSPTS +Y
Sbjct: 1542 GAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPGGAMSPSYSPTSPAY 1600

Query: 1735 SPTSP-SYSP 1743
             P SP  Y+P
Sbjct: 1601 EPRSPGGYTP 1610



 Score = 40.8 bits (94), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 6/131 (4%)

Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 1654
            Y    P+  P   A  PT   +          SP+ +P +   +P   ++SP+  S  +P
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTP 1541

Query: 1655 TSPSYSPTSPA-YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
             +  +SP++ +  S  SPGYSP       +  +  P+SP         SPS  YSP+SP 
Sbjct: 1542 GAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPS--YSPTSPA 1599

Query: 1714 LSPASP--YSP 1722
              P SP  Y+P
Sbjct: 1600 YEPRSPGGYTP 1610


>gi|401881990|gb|EJT46265.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
            var. asahii CBS 2479]
          Length = 1787

 Score = 1787 bits (4628), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 928/1774 (52%), Positives = 1188/1774 (66%), Gaps = 123/1774 (6%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT-ERGKPKPGGLSDPRLGT 59
            M   FPYS A V +++ +QFG++SP+EI       IEH E   E GK K GGL DP++GT
Sbjct: 1    MTVTFPYSSAPVKRIKEIQFGVMSPEEI-------IEHPEVMDENGKQKVGGLMDPKMGT 53

Query: 60   IDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH 119
            IDR  KC+TC+  MAECPGHFGH+ELA+P+FH GF+  V  I+  VC++C K+  D  D 
Sbjct: 54   IDRNFKCQTCSEGMAECPGHFGHIELARPVFHAGFIVKVKKILECVCYSCGKLKVDMRDP 113

Query: 120  KFKQALKIRNPKNRLKKILDACKNKTKCEGGD------EIDVPGQDGEEPLKKNKGGCGA 173
              +  ++   P++RLK I D  K K  CE         E D  G++     K   GGCG 
Sbjct: 114  MVQNIVRRIKPQHRLKAIWDLAKAKNVCEADSLEENDAEQDEYGENSGPKPKTGHGGCGH 173

Query: 174  QQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
             QP    EG+K+IA +K  +   D QE+  EP  R   ++A     +LK+I DED  ++G
Sbjct: 174  HQPAYRKEGLKLIAVFKPSK---DKQEEGSEPERR--NISAAECHNILKKIPDEDLLIMG 228

Query: 234  LNPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERN 282
            LN +YARPDWMIL VLP+PP  VRPS           DDLT++L  I++ +  +R+ E  
Sbjct: 229  LNAEYARPDWMILTVLPVPPAAVRPSISVDGGAMRSEDDLTYKLGEILKASAQVRKLEAE 288

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G P  +++E   LLQFH+ATY DN++ G P+A Q+SGRP+K+I +RLK KEGR+RGNLMG
Sbjct: 289  GVPPSVVNEHFDLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMG 348

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT DP + +DQ+GVP SIA+ LTYPE VTPYNI  L++L+  GP   PG 
Sbjct: 349  KRVDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTPYNINYLQQLINNGPATYPG- 407

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              A+Y ++D G+R+DL+Y K      L+ G+ VERHL DGD+VLFNRQPSLHKMS+M HR
Sbjct: 408  --ARYYVKDTGERIDLKYRKSGEPIPLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHR 465

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +K+M YSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ ++  VP+ I+SPQ+N+P
Sbjct: 466  VKVMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIISPQANKP 525

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            VMGIVQDTL G RK T RD F +     N+L+W  D+DG +P P ILKPRP+WTGKQ+ +
Sbjct: 526  VMGIVQDTLCGVRKFTLRDNFCDWAFVQNLLLWLPDWDGTIPPPAILKPRPMWTGKQLVS 585

Query: 583  LIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            + IPK IN+    A H +     +   D  V ++ GEL+ GT+ K   G ++  LIHVI+
Sbjct: 586  MCIPKGINI----AAHDNERPSPIDVTDQNVLVDNGELVYGTITKSMAGAASNGLIHVIF 641

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E+G   AR F    Q ++N+WLL N FS+GIGDTIAD+ TM  +N+ + +AK+ V+  I
Sbjct: 642  RELGHIKARDFFSAMQRVINFWLLHNGFSVGIGDTIADSATMAAVNNRLVEAKDTVQAFI 701

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
             +A++  ++P PG T+ E+ E  V+  LN ARD AG +AQ +L   NN+K MV +G+KGS
Sbjct: 702  SEAENNKMKPRPGMTIRETLEAAVSGELNKARDWAGKTAQDNLKADNNVKQMVVSGAKGS 761

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
            FINISQM+ CVGQQ VEGKRIPFGF  RTLPHF+KDDYGPESRGFVENSYLRGLTPQEFF
Sbjct: 762  FINISQMSGCVGQQIVEGKRIPFGFRHRTLPHFSKDDYGPESRGFVENSYLRGLTPQEFF 821

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAMGGREGLIDTAVKT+ETGYIQRRLVKAMED+ V YDGTVRNS GD+IQFLYGEDGMD
Sbjct: 822  FHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDLKVGYDGTVRNSGGDIIQFLYGEDGMD 881

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
               +E QTLD+L++  + F+  +R + +          L+  ID  +T  +L+ + D E 
Sbjct: 882  GAMMEKQTLDTLRLSDAAFESKYRVDVLGATGGFKKGTLEAGID--QTSVDLQKLLDEEW 939

Query: 942  QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
             +L  DR  L  EI   GD   PLPVN+KR+I N+Q+ F +D R PSD+ P  ++E    
Sbjct: 940  GQLVEDRRLLREEIFPDGDPGHPLPVNIKRIIQNSQQIFHIDKRLPSDLDPAYLIEKRQA 999

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L + L VV G+DP+S E+Q+NATL FNILLRS  A++RVL+++ L+R AF+WV GEIE+ 
Sbjct: 1000 LSDSLVVVRGDDPISRESQRNATLLFNILLRSQLATRRVLEDYHLSRVAFDWVCGEIETL 1059

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F +++VA  EM+G +AAQSIGEPATQMTLNTFHYAGVS+K+VT GVPRL+EIINVA  I+
Sbjct: 1060 FNRAIVAAAEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKSVTGGVPRLKEIINVATNIR 1119

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TP+ +V+L P  + T+  A  +   L YT LR VT + E++YDP    T IEED EFV +
Sbjct: 1120 TPATNVYLDPEYSRTERDAHQISRKLTYTRLRDVTASVEIFYDPKLDSTDIEEDKEFVDA 1179

Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            ++ +PDEDI  E  SPWLLR+EL+R  +++    MA +   I      D+  I ++DNAD
Sbjct: 1180 FFAIPDEDIRLELHSPWLLRLELDRAKVLEGGYEMADIVSAIVSTVGKDMFVIHSEDNAD 1239

Query: 1242 KLILRIRIMNDEAPKGE--LNDESAEDDVFLKKIESNMLTEMAL---------------- 1283
            KLI+RIR++ +E   GE  L DE    D+FLK+IE  +L  + L                
Sbjct: 1240 KLIIRIRVVAEEKMDGEELLGDE----DMFLKRIELTLLDGVELGGIPGITRVFISEGKQ 1295

Query: 1284 -------------------RGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                                G+NL  VM  + VD  R  SN+  E+ ++LGIEA R AL 
Sbjct: 1296 TVLSQKGEYDQQQEWFLETDGINLQQVMAVDGVDFTRAYSNNCYEVWQILGIEAGRNALY 1355

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
             EL  VI+  GSYVNYRH+A+LCD M  +GHLM+ITRHGINR D G + RCSFEETV+IL
Sbjct: 1356 KELHGVIASGGSYVNYRHMALLCDLMCNKGHLMSITRHGINRTDAGALSRCSFEETVEIL 1415

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI-ELQLPSYMEGLEFG 1443
            L+AA   + D  +GV EN++LGQ+AP+GTG   + L+  MLK+ I + +LP  +   + G
Sbjct: 1416 LEAAAVGDVDDCQGVAENVLLGQMAPMGTGAFDVSLDLGMLKDVIVDHRLPVQIALAQKG 1475

Query: 1444 MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP-----GY 1498
                           G M+PG   +P   +SP+ +      V   +FSP  +      GY
Sbjct: 1476 A--------------GGMTPGGAMTPYDNMSPMWNGGGMGGVASASFSPMQTSNNDEGGY 1521

Query: 1499 SPSSPGYSPSSPGYSPTSPG---YSPTSPGYSPTSPGYSPTSPTYS---------PSSPG 1546
                 G SP   G SP +PG   +SPTSP  + TSP Y PTSP +          P + G
Sbjct: 1522 GAMPYGMSPMQGGQSPYAPGGAGFSPTSPFATATSP-YQPTSPAWGGAGGMSPWVPRNQG 1580

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYS 1604
            Y  TSP+YSPTSP Y+PTSP YSPTSPSYSPTSP+YSP SP+Y    TSP YSPTSP+YS
Sbjct: 1581 YGATSPSYSPTSPQYNPTSPRYSPTSPSYSPTSPAYSPASPAYGGGRTSPGYSPTSPAYS 1640

Query: 1605 PTSPA------YSPTSPAYSPTSPAYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSP 1657
            PTSP       YSPTSP YSP SPA+SPTSP+YSPTSP ++  TSP YSPTSP++SPTSP
Sbjct: 1641 PTSPMGATSPRYSPTSPQYSPASPAFSPTSPAYSPTSPQAFQATSPKYSPTSPAFSPTSP 1700

Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
            SYSPTSP YSPTSP YSP SP+YSPTSP YSPTS
Sbjct: 1701 SYSPTSPVYSPTSPSYSPASPAYSPTSPVYSPTS 1734



 Score =  181 bits (460), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/229 (50%), Positives = 142/229 (62%), Gaps = 16/229 (6%)

Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
             S S+SP   S +     Y       SP     SP    Y+P    +SPTSP  + TSP 
Sbjct: 1504 ASASFSPMQTSNNDEG-GYGAMPYGMSPMQGGQSP----YAPGGAGFSPTSPFATATSP- 1557

Query: 1631 YSPTSPSYSPT---SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTY 1687
            Y PTSP++      SP + P +  Y  TSPSYSPTSP Y+PTSP YSPTSPSYSPTSP Y
Sbjct: 1558 YQPTSPAWGGAGGMSP-WVPRNQGYGATSPSYSPTSPQYNPTSPRYSPTSPSYSPTSPAY 1616

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPT 1747
            SP SP+Y     + SP   YSP+SP  SP SP   TSP YSPTS  YSP SP++SP+SP 
Sbjct: 1617 SPASPAYG--GGRTSP--GYSPTSPAYSPTSPMGATSPRYSPTSPQYSPASPAFSPTSPA 1672

Query: 1748 YSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTPQT 1795
            YSP+SP      +P YSP+SP +SP++  YSP++P YSP+S S Y+P +
Sbjct: 1673 YSPTSPQAFQATSPKYSPTSPAFSPTSPSYSPTSPVYSPTSPS-YSPAS 1720


>gi|410979885|ref|XP_003996311.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Felis catus]
          Length = 1817

 Score = 1786 bits (4627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 913/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLAKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P++ARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRFARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSAXXQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 55/129 (42%), Gaps = 28/129 (21%)

Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS-YSP 1633
            Y    P+  P   +  PT   +          SPA +P +   +P   A+SP+  S  +P
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTP 1541

Query: 1634 TSPSYSPTSPS-YSPTSPSYSPT-------------------------SPSYSPTSPAYS 1667
             +  +SP++ S  S  SP YSP                          SPSYSPTSPAY 
Sbjct: 1542 GAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYE 1601

Query: 1668 PTSP-GYSP 1675
            P SP GY+P
Sbjct: 1602 PRSPGGYTP 1610



 Score = 48.9 bits (115), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 14/129 (10%)

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 1591
            Y    PT  P      PT   +          SP+ +P +   +P   ++SP+  S  +P
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTP 1541

Query: 1592 TSPSYSPTSPS-YSPTSPAYSPT------SPAYSPTSPAYSPT-----SPSYSPTSPSYS 1639
             +  +SP++ S  S  SP YSP       SP     S  Y P+     SPSYSPTSP+Y 
Sbjct: 1542 GAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYE 1601

Query: 1640 PTSP-SYSP 1647
            P SP  Y+P
Sbjct: 1602 PRSPGGYTP 1610



 Score = 47.0 bits (110), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 57/135 (42%), Gaps = 32/135 (23%)

Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPS-- 1744
            Y    P+  P      P+  +  S+P     SP    SP  +P +   +P   ++SPS  
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAP-----SPMGGISPAMTPWNQGATPAYGAWSPSVG 1536

Query: 1745 ------SPTYSPSSPYNAGGGNPDYSPS-------------SPQYSPSAG------YSPS 1779
                  +  +SPS+  +A G +P YSP+             S  Y PS G      YSP+
Sbjct: 1537 SGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPT 1596

Query: 1780 APGYSPSSTSQYTPQ 1794
            +P Y P S   YTPQ
Sbjct: 1597 SPAYEPRSPGGYTPQ 1611



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 63/150 (42%), Gaps = 23/150 (15%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
            Y    P+  P   +  PT   +          SPA +P + G +P   ++SP+       
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPS------V 1535

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSP 1750
                 P +A +SPS            AS  S  SP YSP + S +P SP     S  Y P
Sbjct: 1536 GSGMTPGAAGFSPS-----------AASDASGFSPGYSP-AWSPTPGSPGSPGPSSPYIP 1583

Query: 1751 SSPYNAGGGNPDYSPSSPQYSPSA--GYSP 1778
            S     G  +P YSP+SP Y P +  GY+P
Sbjct: 1584 SP---GGAMSPSYSPTSPAYEPRSPGGYTP 1610


>gi|410906965|ref|XP_003966962.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like, partial
            [Takifugu rubripes]
          Length = 1628

 Score = 1786 bits (4626), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 918/1636 (56%), Positives = 1165/1636 (71%), Gaps = 124/1636 (7%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFGI+SPDE+++MSV +  I + ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 16   IKRVQFGIISPDELKRMSVTEGGIRYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 75

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL--KIRNP 130
            M ECPGHFGH+ELAKP+FH+GF+  ++ ++R VCF CSK+L D ++ K K  L      P
Sbjct: 76   MTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDANNPKIKDILVKSKGQP 135

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            + RL  + + CK K  CEGG+E+D    +  Q+ EE + K KG  GCG  QP++   G++
Sbjct: 136  RKRLTHVYELCKGKNICEGGEEMDNKFGMEQQETEEDITKEKGHGGCGRYQPRIRRSGLE 195

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+  +LG++ K+ARP+WM
Sbjct: 196  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEEDIILGMDSKFARPEWM 246

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E++GA AH+I+E  +
Sbjct: 247  IVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVK 306

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KSI  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 307  LLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVIT 366

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP + IDQ+GVP SIA N+T+PE VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 367  PDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 423

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL++GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 424  RIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 483

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 484  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 543

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+++   MN+LM+   +DGK+PQP ILKPR LWTGKQ+F+LIIP  IN+ RT
Sbjct: 544  RKFTKRDVFLDRGEVMNLLMFLSTWDGKMPQPAILKPRALWTGKQIFSLIIPGHINVIRT 603

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 604  HSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 663

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q +VN WLL    SIGIGD+IADAKT   I +TI KAK +V  +I++A +  L
Sbjct: 664  RLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNEL 723

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV AGSKGS INISQ+ 
Sbjct: 724  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVI 783

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 784  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 843

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYDGTVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 844  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVEFQN 903

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            + +LK     F+K F+F+   E      + ++ + D+ T   ++   + E +K++ DR +
Sbjct: 904  VATLKPSHRAFEKKFKFDCTNERALRRTLQEDVVKDVMTNAHVQSSLEREFEKMKEDR-E 962

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            +   I  +GDS   LP NL R+IWNAQK F+++ R P+D+ P+ VVE    L ++L +V 
Sbjct: 963  ILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLSPLRVVEGTHDLSKKLVIVN 1022

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  SKR+ +E RL+ EAF+W++GEIE++F  S+  PG
Sbjct: 1023 GDDPLSKQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNHSIAHPG 1082

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTPSL+VFL 
Sbjct: 1083 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLL 1142

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++EED E+V  YYEMPD D+
Sbjct: 1143 GQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVEEDQEWVNVYYEMPDFDV 1202

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
               +ISPWLLRIEL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1203 T--RISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1260

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K + ++E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1261 NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1320

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1321 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1380

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHGINR DTGP+M+CSFEETVD+L++A
Sbjct: 1381 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA 1440

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSY----MEGLE 1441
            +   E D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1441 SSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGSTGMF 1500

Query: 1442 FGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPS 1501
            FG  P  SP+SG       MSP         ++P      +P  G  A+SP+   G +P 
Sbjct: 1501 FGSAP--SPMSG-------MSPA--------MTPWNTGA-TPAYG--AWSPSVGSGMTPG 1540

Query: 1502 SPGYSPSSP----GYSPT-SPGYSPTSPGYSPTSPGYSPTSPTYSPS-----SPGYSPTS 1551
            + G+SPS+     G+SP  SP +SPT PG SP SPG  P SP Y PS     SP YSPTS
Sbjct: 1541 AAGFSPSAASDASGFSPGYSPAWSPT-PG-SPGSPG--PASP-YIPSPGGAMSPNYSPTS 1595

Query: 1552 PAYSPTSP-SYSPTSP 1566
            PAY P SP  Y+P SP
Sbjct: 1596 PAYEPRSPGGYTPQSP 1611



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 18/124 (14%)

Query: 1588 SYSPTSPSYSPTSPS-YSPTSPAYSPTSPAYSPTSPAYSPTSPS-YSPTSPSYSPTSPS- 1644
            S + ++  +  ++PS  S  SPA +P +   +P   A+SP+  S  +P +  +SP++ S 
Sbjct: 1492 SVAGSTGMFFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASD 1551

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPG----YSPT-----SPSYSPTSPTYSPTSP-SY 1694
             S  SP Y   SP++SPT P  SP SPG    Y P+     SP+YSPTSP Y P SP  Y
Sbjct: 1552 ASGFSPGY---SPAWSPT-PG-SPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGY 1606

Query: 1695 NPQS 1698
             PQS
Sbjct: 1607 TPQS 1610



 Score = 57.8 bits (138), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 25/142 (17%)

Query: 1630 SYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPAYSPT-SPGYSPTSPSYSPTSPT- 1686
            S + ++  +  ++PS  S  SP+ +P +   +P   A+SP+   G +P +  +SP++ + 
Sbjct: 1492 SVAGSTGMFFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASD 1551

Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
             S  SP Y+P    +SP+   SP SP   PASPY P     SP  +     SP+YSP+SP
Sbjct: 1552 ASGFSPGYSP---AWSPTPG-SPGSP--GPASPYIP-----SPGGA----MSPNYSPTSP 1596

Query: 1747 TYSPSSPYNAGGGNPDYSPSSP 1768
             Y P SP   GG    Y+P SP
Sbjct: 1597 AYEPRSP---GG----YTPQSP 1611



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 61/110 (55%), Gaps = 10/110 (9%)

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSS-YSPTSPSYSPS-S 1745
            S  SP+  P +   +P  AY   SP  S  S  +P +  +SP+++S  S  SP YSP+ S
Sbjct: 1509 SGMSPAMTPWNTGATP--AYGAWSP--SVGSGMTPGAAGFSPSAASDASGFSPGYSPAWS 1564

Query: 1746 PTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
            PT  P SP + G  +P Y PS P  + S  YSP++P Y P S   YTPQ+
Sbjct: 1565 PT--PGSPGSPGPASP-YIPS-PGGAMSPNYSPTSPAYEPRSPGGYTPQS 1610


>gi|194217622|ref|XP_001918406.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Equus caballus]
          Length = 1834

 Score = 1786 bits (4626), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNVG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score = 48.5 bits (114), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 14/129 (10%)

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 1591
            Y    PT  P      PT   +          SP+ +P +   +P   ++SP+  S  +P
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNVGATPAYGAWSPSVGSGMTP 1541

Query: 1592 TSPSYSPTSPS-YSPTSPAYSPT------SPAYSPTSPAYSPT-----SPSYSPTSPSYS 1639
             +  +SP++ S  S  SP YSP       SP     S  Y P+     SPSYSPTSP+Y 
Sbjct: 1542 GAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYE 1601

Query: 1640 PTSP-SYSP 1647
            P SP  Y+P
Sbjct: 1602 PRSPGGYTP 1610



 Score = 47.8 bits (112), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 53/129 (41%), Gaps = 35/129 (27%)

Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP----TSPAYSPTSPSY----SP 1633
            Y    P+  P   +  PT   +          SPA +P     +PAY   SPS     +P
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNVGATPAYGAWSPSVGSGMTP 1541

Query: 1634 TSPSYSPTSPS-YSPTSPSYSPT-------------------------SPSYSPTSPAYS 1667
             +  +SP++ S  S  SP YSP                          SPSYSPTSPAY 
Sbjct: 1542 GAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYE 1601

Query: 1668 PTSP-GYSP 1675
            P SP GY+P
Sbjct: 1602 PRSPGGYTP 1610



 Score = 46.6 bits (109), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 26/132 (19%)

Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPR----LSPASPYSPTSPNYSPTSSSYSPTSPS-Y 1741
            Y    P+  P      P+  +  S+P     +SPA   +P +   +P   ++SP+  S  
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPA--MTPWNVGATPAYGAWSPSVGSGM 1539

Query: 1742 SPSSPTYSPSSPYNAGGGNPDYSPS-------------SPQYSPSAG------YSPSAPG 1782
            +P +  +SPS+  +A G +P YSP+             S  Y PS G      YSP++P 
Sbjct: 1540 TPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPA 1599

Query: 1783 YSPSSTSQYTPQ 1794
            Y P S   YTPQ
Sbjct: 1600 YEPRSPGGYTPQ 1611



 Score = 42.0 bits (97), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 63/150 (42%), Gaps = 23/150 (15%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
            Y    P+  P   +  PT   +          SPA +P + G +P   ++SP+       
Sbjct: 1482 YGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNVGATPAYGAWSPS------V 1535

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSP 1750
                 P +A +SPS            AS  S  SP YSP + S +P SP     S  Y P
Sbjct: 1536 GSGMTPGAAGFSPS-----------AASDASGFSPGYSP-AWSPTPGSPGSPGPSSPYIP 1583

Query: 1751 SSPYNAGGGNPDYSPSSPQYSPSA--GYSP 1778
            S     G  +P YSP+SP Y P +  GY+P
Sbjct: 1584 SP---GGAMSPSYSPTSPAYEPRSPGGYTP 1610


>gi|426201955|gb|EKV51878.1| hypothetical protein AGABI2DRAFT_215454, partial [Agaricus bisporus
            var. bisporus H97]
          Length = 1800

 Score = 1785 bits (4624), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 939/1707 (55%), Positives = 1181/1707 (69%), Gaps = 118/1707 (6%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTID 61
            +F YS A + KV+ VQFGILSP+EI+  SV +IEH E  +    KPK GGL DPR+GTID
Sbjct: 5    QFAYSSAPIRKVKEVQFGILSPEEIKATSVAKIEHPEVMDEATHKPKMGGLMDPRMGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R  KC+TC   M+ECPGHFGH+ELA+P+FH GF+  V  I+  +C NC K+ AD  D  F
Sbjct: 65   RNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADTSDPNF 124

Query: 122  KQALK-IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD--GEEPLKKNKGGCGAQQPKL 178
               ++ IR  K RL  +   CK KT CE  D+I   G D   +EP KK  GGCG  QP++
Sbjct: 125  ADKIRHIRESKARLAVVWAHCKAKTVCEP-DDIKEDGVDPEADEP-KKGHGGCGHIQPQV 182

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              EG+K+  +YK  +  +D  ++L  P E         V  V K+++D D  LLGL+ +Y
Sbjct: 183  RKEGLKLFVQYKKTKDDDDPDKRLITPSE---------VYTVFKKMTDSDLHLLGLSDEY 233

Query: 239  ARPDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
            ARP+WMIL V           + +    +R  DDLT++L  II+ + N+RR E+ GAPAH
Sbjct: 234  ARPEWMILTVMPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDIIKASANVRRCEQEGAPAH 293

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            +ISEF QLLQFH+ATY DN++ G P+A Q+SGRP+K++ +RLK KEGR+RGNLMGKRVDF
Sbjct: 294  VISEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKALRARLKGKEGRLRGNLMGKRVDF 353

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVIT DP + +D++GVP SIA+NLT+PE VTPYNI  L+ELV  GP   PG   A+Y
Sbjct: 354  SARTVITGDPNLELDEVGVPKSIAMNLTFPERVTPYNITYLQELVRNGPTTYPG---ARY 410

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            ++RD G+R+DLRY  K +D  L+ G+ VERHL DGDFVLFNRQPSLHKMS+M HR+++MP
Sbjct: 411  VVRDTGERIDLRY-NKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMP 469

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            YSTFRLNLSVT PYNADFDGDEMNMHVPQS ETRAE+ ++  VP+ I+SPQ+N+PVMGIV
Sbjct: 470  YSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQVAWVPRQIISPQANKPVMGIV 529

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL G RK T RD F++ +   NIL+W  D+DG +P P ILKP+PLWTGKQ+ ++ IP+
Sbjct: 530  QDTLCGVRKFTLRDCFLDWNHVQNILLWVPDWDGTIPTPAILKPKPLWTGKQILSMTIPR 589

Query: 588  QINLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
             IN+ R+    + N   D G+L        IE GEL+ G + KKT+G + G L+HV++ E
Sbjct: 590  GINIHRSPDPKSSNPVFDDGML--------IENGELIFGIVDKKTVGATQGGLVHVVFRE 641

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
             GP+  R+     Q +VN+WL  N FSIGIGDTIAD KTM  I  TI + K  V  +I+ 
Sbjct: 642  KGPEVTRQLFTGLQRVVNFWLFHNGFSIGIGDTIADMKTMSYITQTIIERKAEVTKIIED 701

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            A    L+P+PG T+ ESFE+ V + LN ARD +G  AQK L E NN+K MV AGSKGSFI
Sbjct: 702  ATHDRLKPKPGMTIRESFESMVERQLNLARDTSGQYAQKHLKEDNNVKQMVVAGSKGSFI 761

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQM+ CVGQQ+VEG+RIPFGF  RTLPHFTKDD+ PESRGFVENSYLRGLTPQEFFFH
Sbjct: 762  NISQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFTPESRGFVENSYLRGLTPQEFFFH 821

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AM GREGLIDTAVKT+ETGYIQRRLVKA+ED+MV YDGTVRNSLGD+IQF+YGEDGMD  
Sbjct: 822  AMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMDGA 881

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEM-DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            +IE QT+++  +   EF   +R ++ D E      +LQ  IDD  +  EL+   D E ++
Sbjct: 882  FIEKQTIETFGLNDKEFQHNYRVDVTDPEGGFLPGVLQVGIDD--SSLELQQKLDEEYKQ 939

Query: 944  LEADRYQLATEIATSGDSSWP--LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
            L  DR  L   I     ++ P  LPVNL R++ NA + F +D R+PSD+ P  +V+AV +
Sbjct: 940  LVEDRKTLRYFIFPRTPTTQPHYLPVNLLRIVQNASQIFHIDRRKPSDLEPTYIVDAVRE 999

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L++RL VV GEDPLS EAQ+NATL F + LR+TFA++RVL++  LTREAF+WV+GE+E++
Sbjct: 1000 LEKRLVVVRGEDPLSYEAQENATLMFKMHLRATFATRRVLEKFHLTREAFDWVLGEVEAK 1059

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F QS+V PGEM G ++AQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA  IK
Sbjct: 1060 FNQSVVHPGEMCGTLSAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIK 1119

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPSL+V+L+P ++ +   AKNVQ  L YT+LR+VT A E+WYDPDP  TIIEED  FV+S
Sbjct: 1120 TPSLTVYLEPEISVSPTLAKNVQQELAYTSLRTVTAAVEIWYDPDPTSTIIEEDSVFVES 1179

Query: 1182 YYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
            ++ +PDE+   +    SPWLLR+E++R  M+D+KL M  VA +I   F  DL  I+++DN
Sbjct: 1180 FFAIPDEETESKLHLQSPWLLRLEMDRAKMIDRKLMMQYVANRIGDSFKTDLFVIWSEDN 1239

Query: 1240 ADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR--------------- 1284
            ++KLI+R R++     K +    S E+D+FL+++E+ ML  ++LR               
Sbjct: 1240 SEKLIIRCRVLG-SPDKDDEGYGSVEEDIFLRQLENTMLNSVSLRGVKGINRVFLTEADK 1298

Query: 1285 ----------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                  GVNL  VMC + VD  RT SN  +EI  VLGIEA R A
Sbjct: 1299 VMIRPDGTIETGKDKEWVLETDGVNLKTVMCIDGVDFTRTYSNSCVEIFNVLGIEAARAA 1358

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            ++ ELR VI FDGSYVNYRHLA+LCD MT+RG LMAITRHGINR DTG +MRCSFEETV+
Sbjct: 1359 IMKELRSVIEFDGSYVNYRHLALLCDLMTHRGSLMAITRHGINRADTGALMRCSFEETVE 1418

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI---ELQLPSYMEG 1439
            +L++AA   E D   G+ EN+M GQ+AP+GTG   + L+ +MLK+AI    L + S +  
Sbjct: 1419 VLMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFEVALDIDMLKDAIVDHSLPVQSMLAA 1478

Query: 1440 -LEFGMTPARSPVSGTPY-------HDGMM-SPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
             LE GMTP +  V+ TPY       HDGM  S    F+P         + FS    G   
Sbjct: 1479 HLEDGMTPGQ--VAMTPYDTNSPMWHDGMFKSESASFTPLASNGGDEASSFSFMPFGQ-- 1534

Query: 1491 SPTSSPGYSPSSPGYSPSSP-GYSPTSPGYSPTSPGYSPTSP-GYSP------------- 1535
            SP  + G SP  PGYSPSSP  YSPTSP + P SP    TSP G SP             
Sbjct: 1535 SPLGAGGMSPGGPGYSPSSPNAYSPTSPSFVPQSPYGGATSPFGTSPYATSPFIHRAGGM 1594

Query: 1536 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1595
            TSPTYSP+SP  + TSPAYSPTSP YSPTSPS+SPTSP YSP SPS+SPTSP YSPTSPS
Sbjct: 1595 TSPTYSPTSPTLNLTSPAYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPS 1654

Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
            +SP SP YSPTSP  SP+SP Y PTSP
Sbjct: 1655 FSPASPRYSPTSPRMSPSSPKYPPTSP 1681



 Score =  155 bits (391), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/213 (48%), Positives = 130/213 (61%), Gaps = 26/213 (12%)

Query: 1523 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPS 1581
            +PG    +P Y   SP +      +   S +++P + +    + S+S      SP  +  
Sbjct: 1485 TPGQVAMTP-YDTNSPMWHDGM--FKSESASFTPLASNGGDEASSFSFMPFGQSPLGAGG 1541

Query: 1582 YSPTSPSYSPTSP-SYSPTSPSYSPTSPAYSPTSP-AYSP--TSP----AYSPTSPSYSP 1633
             SP  P YSP+SP +YSPTSPS+ P SP    TSP   SP  TSP    A   TSP+YSP
Sbjct: 1542 MSPGGPGYSPSSPNAYSPTSPSFVPQSPYGGATSPFGTSPYATSPFIHRAGGMTSPTYSP 1601

Query: 1634 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
            TSP+ + TSP+YSPTSP YSPTSPS+SPTSP YSP SP +SPTSP YSPTSP++SP SP 
Sbjct: 1602 TSPTLNLTSPAYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPR 1661

Query: 1694 YNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSP 1725
                         YSP+SPR+SP+SP Y PTSP
Sbjct: 1662 -------------YSPTSPRMSPSSPKYPPTSP 1681



 Score =  149 bits (377), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/219 (47%), Positives = 129/219 (58%), Gaps = 31/219 (14%)

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPS 1602
            +PG    +P Y   SP +      +   S S++P + +    + S+S      SP  +  
Sbjct: 1485 TPGQVAMTP-YDTNSPMWH--DGMFKSESASFTPLASNGGDEASSFSFMPFGQSPLGAGG 1541

Query: 1603 YSPTSPAYSPTSP-AYSPTSPAYSPTSPSYSPTSP-SYSP--TSP----SYSPTSPSYSP 1654
             SP  P YSP+SP AYSPTSP++ P SP    TSP   SP  TSP    +   TSP+YSP
Sbjct: 1542 MSPGGPGYSPSSPNAYSPTSPSFVPQSPYGGATSPFGTSPYATSPFIHRAGGMTSPTYSP 1601

Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
            TSP+ + TSPAYSPTSP YSPTSPS+SPTSP YSP SPS+             SP+SPR 
Sbjct: 1602 TSPTLNLTSPAYSPTSPRYSPTSPSFSPTSPRYSPQSPSF-------------SPTSPR- 1647

Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
                 YSPTSP++SP S  YSPTSP  SPSSP Y P+SP
Sbjct: 1648 -----YSPTSPSFSPASPRYSPTSPRMSPSSPKYPPTSP 1681



 Score =  127 bits (318), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 102/153 (66%), Gaps = 24/153 (15%)

Query: 1639 SPTSPSYSPTSP-SYSPTSPSYSPTSPAYSPTSP-GYSP--TSP----SYSPTSPTYSPT 1690
            SP  P YSP+SP +YSPTSPS+ P SP    TSP G SP  TSP    +   TSPTYSPT
Sbjct: 1543 SPGGPGYSPSSPNAYSPTSPSFVPQSPYGGATSPFGTSPYATSPFIHRAGGMTSPTYSPT 1602

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYS 1749
            SP+ N  S       AYSP+SPR SP SP +SPTSP YSP S S+SPTSP YSP+SP++S
Sbjct: 1603 SPTLNLTSP------AYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFS 1656

Query: 1750 PSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAP 1781
            P+SP         YSP+SP+ SPS+  Y P++P
Sbjct: 1657 PASP--------RYSPTSPRMSPSSPKYPPTSP 1681


>gi|431894008|gb|ELK03814.1| DNA-directed RNA polymerase II subunit RPB1 [Pteropus alecto]
          Length = 1975

 Score = 1785 bits (4623), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1625 (56%), Positives = 1156/1625 (71%), Gaps = 117/1625 (7%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYK-----VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            R+DLR+  K SD HL+ GYK     VERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+S
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKACNKLVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS 485

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQD
Sbjct: 486  TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD 545

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  I
Sbjct: 546  TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHI 605

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            N  RT + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+
Sbjct: 606  NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM 665

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G D  R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A
Sbjct: 666  GHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA 725

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS IN
Sbjct: 726  HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN 785

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHA
Sbjct: 786  ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA 845

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    
Sbjct: 846  MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES 905

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E Q L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++ 
Sbjct: 906  VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR 965

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++
Sbjct: 966  EDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKK 1024

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
            L +V G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q+
Sbjct: 1025 LVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQA 1084

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
            +  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL
Sbjct: 1085 IAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSL 1144

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +VFL        ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEM
Sbjct: 1145 TVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEM 1204

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PD D+A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+L
Sbjct: 1205 PDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVL 1262

Query: 1246 RIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR------------------ 1284
            RIRIMN +  K +  +E     +DDVFL+ IESNMLT+M L+                  
Sbjct: 1263 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNK 1322

Query: 1285 ----------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                  GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+A
Sbjct: 1323 KKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKA 1382

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            L  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD
Sbjct: 1383 LERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVD 1442

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME-- 1438
            +L++AA   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P      
Sbjct: 1443 VLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAG 1502

Query: 1439 --GLEFGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFS 1491
              G+ FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FS
Sbjct: 1503 PTGMFFGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFS 1552

Query: 1492 PTSSPGYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP 1545
            P+++   S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP
Sbjct: 1553 PSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSP 1610

Query: 1546 -GYSP 1549
             GY+P
Sbjct: 1611 GGYTP 1615



 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1858 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1917

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1918 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1968



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1858 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1917

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1918 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1968



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1858 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1917

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1918 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1968



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1858 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1917

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1918 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1968



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1858 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1916

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1917 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1968



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1858 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1917

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1918 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1968



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1858 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1905

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1906 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1950

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1951 GYSPTSPTYS 1960


>gi|406700979|gb|EKD04138.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
            var. asahii CBS 8904]
          Length = 1771

 Score = 1785 bits (4623), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 928/1774 (52%), Positives = 1188/1774 (66%), Gaps = 123/1774 (6%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT-ERGKPKPGGLSDPRLGT 59
            M   FPYS A V +++ +QFG++SP+EI       IEH E   E GK K GGL DP++GT
Sbjct: 1    MTVTFPYSSAPVKRIKEIQFGVMSPEEI-------IEHPEVMDENGKQKVGGLMDPKMGT 53

Query: 60   IDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH 119
            IDR  KC+TC+  MAECPGHFGH+ELA+P+FH GF+  V  I+  VC++C K+  D  D 
Sbjct: 54   IDRNFKCQTCSEGMAECPGHFGHIELARPVFHAGFIVKVKKILECVCYSCGKLKVDMRDP 113

Query: 120  KFKQALKIRNPKNRLKKILDACKNKTKCEGGD------EIDVPGQDGEEPLKKNKGGCGA 173
              +  ++   P++RLK I D  K K  CE         E D  G++     K   GGCG 
Sbjct: 114  MVQNIVRRIKPQHRLKAIWDLAKAKNVCEADSLEENDAEQDEYGENSGPKPKTGHGGCGH 173

Query: 174  QQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
             QP    EG+K+IA +K  +   D QE+  EP  R   ++A     +LK+I DED  ++G
Sbjct: 174  HQPAYRKEGLKLIAVFKPSK---DKQEEGSEPERR--NISAAECHNILKKIPDEDLLIMG 228

Query: 234  LNPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERN 282
            LN +YARPDWMIL VLP+PP  VRPS           DDLT++L  I++ +  +R+ E  
Sbjct: 229  LNAEYARPDWMILTVLPVPPAAVRPSISVDGGAMRSEDDLTYKLGEILKASAQVRKLEAE 288

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G P  +++E   LLQFH+ATY DN++ G P+A Q+SGRP+K+I +RLK KEGR+RGNLMG
Sbjct: 289  GVPPSVVNEHFDLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMG 348

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT DP + +DQ+GVP SIA+ LTYPE VTPYNI  L++L+  GP   PG 
Sbjct: 349  KRVDFSARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTPYNINYLQQLINNGPATYPG- 407

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              A+Y ++D G+R+DL+Y K      L+ G+ VERHL DGD+VLFNRQPSLHKMS+M HR
Sbjct: 408  --ARYYVKDTGERIDLKYRKSGEPIPLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHR 465

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +K+M YSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ ++  VP+ I+SPQ+N+P
Sbjct: 466  VKVMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIISPQANKP 525

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            VMGIVQDTL G RK T RD F +     N+L+W  D+DG +P P ILKPRP+WTGKQ+ +
Sbjct: 526  VMGIVQDTLCGVRKFTLRDNFCDWAFVQNLLLWLPDWDGTIPPPAILKPRPMWTGKQLVS 585

Query: 583  LIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            + IPK IN+    A H +     +   D  V ++ GEL+ GT+ K   G ++  LIHVI+
Sbjct: 586  MCIPKGINI----AAHDNERPSPIDVTDQNVLVDNGELVYGTITKSMAGAASNGLIHVIF 641

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E+G   AR F    Q ++N+WLL N FS+GIGDTIAD+ TM  +N+ + +AK+ V+  I
Sbjct: 642  RELGHIKARDFFSAMQRVINFWLLHNGFSVGIGDTIADSATMAAVNNRLVEAKDTVQAFI 701

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
             +A++  ++P PG T+ E+ E  V+  LN ARD AG +AQ +L   NN+K MV +G+KGS
Sbjct: 702  SEAENNKMKPRPGMTIRETLEAAVSGELNKARDWAGKTAQDNLKADNNVKQMVVSGAKGS 761

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
            FINISQM+ CVGQQ VEGKRIPFGF  RTLPHF+KDDYGPESRGFVENSYLRGLTPQEFF
Sbjct: 762  FINISQMSGCVGQQIVEGKRIPFGFRHRTLPHFSKDDYGPESRGFVENSYLRGLTPQEFF 821

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAMGGREGLIDTAVKT+ETGYIQRRLVKAMED+ V YDGTVRNS GD+IQFLYGEDGMD
Sbjct: 822  FHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDLKVGYDGTVRNSGGDIIQFLYGEDGMD 881

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
               +E QTLD+L++  + F+  +R + +          L+  ID  +T  +L+ + D E 
Sbjct: 882  GAMMEKQTLDTLRLSDAAFESKYRVDVLGATGGFKKGTLEAGID--QTSVDLQKLLDEEW 939

Query: 942  QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
             +L  DR  L  EI   GD   PLPVN+KR+I N+Q+ F +D R PSD+ P  ++E    
Sbjct: 940  GQLVEDRRLLREEIFPDGDPGHPLPVNIKRIIQNSQQIFHIDKRLPSDLDPAYLIEKRQA 999

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L + L VV G+DP+S E+Q+NATL FNILLRS  A++RVL+++ L+R AF+WV GEIE+ 
Sbjct: 1000 LSDSLVVVRGDDPISRESQRNATLLFNILLRSQLATRRVLEDYHLSRVAFDWVCGEIETL 1059

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F +++VA  EM+G +AAQSIGEPATQMTLNTFHYAGVS+K+VT GVPRL+EIINVA  I+
Sbjct: 1060 FNRAIVAAAEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKSVTGGVPRLKEIINVATNIR 1119

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TP+ +V+L P  + T+  A  +   L YT LR VT + E++YDP    T IEED EFV +
Sbjct: 1120 TPATNVYLDPEYSRTERDAHQISRKLTYTRLRDVTASVEIFYDPKLDSTDIEEDKEFVDA 1179

Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            ++ +PDEDI  E  SPWLLR+EL+R  +++    MA +   I      D+  I ++DNAD
Sbjct: 1180 FFAIPDEDIRLELHSPWLLRLELDRAKVLEGGYEMADIVSAIVSTVGKDMFVIHSEDNAD 1239

Query: 1242 KLILRIRIMNDEAPKGE--LNDESAEDDVFLKKIESNMLTEMAL---------------- 1283
            KLI+RIR++ +E   GE  L DE    D+FLK+IE  +L  + L                
Sbjct: 1240 KLIIRIRVVAEEKMDGEELLGDE----DMFLKRIELTLLDGVELGGIPGITRVFISEGKQ 1295

Query: 1284 -------------------RGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                                G+NL  VM  + VD  R  SN+  E+ ++LGIEA R AL 
Sbjct: 1296 TVLSQKGEYDQQQEWFLETDGINLQQVMAVDGVDFTRAYSNNCYEVWQILGIEAGRNALY 1355

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
             EL  VI+  GSYVNYRH+A+LCD M  +GHLM+ITRHGINR D G + RCSFEETV+IL
Sbjct: 1356 KELHGVIASGGSYVNYRHMALLCDLMCNKGHLMSITRHGINRTDAGALSRCSFEETVEIL 1415

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI-ELQLPSYMEGLEFG 1443
            L+AA   + D  +GV EN++LGQ+AP+GTG   + L+  MLK+ I + +LP  +   + G
Sbjct: 1416 LEAAAVGDVDDCQGVAENVLLGQMAPMGTGAFDVSLDLGMLKDVIVDHRLPVQIALAQKG 1475

Query: 1444 MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP-----GY 1498
                           G M+PG   +P   +SP+ +      V   +FSP  +      GY
Sbjct: 1476 A--------------GGMTPGGAMTPYDNMSPMWNGGGMGGVASASFSPMQTSNNDEGGY 1521

Query: 1499 SPSSPGYSPSSPGYSPTSPG---YSPTSPGYSPTSPGYSPTSPTYS---------PSSPG 1546
                 G SP   G SP +PG   +SPTSP  + TSP Y PTSP +          P + G
Sbjct: 1522 GAMPYGMSPMQGGQSPYAPGGAGFSPTSPFATATSP-YQPTSPAWGGAGGMSPWVPRNQG 1580

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYS 1604
            Y  TSP+YSPTSP Y+PTSP YSPTSPSYSPTSP+YSP SP+Y    TSP YSPTSP+YS
Sbjct: 1581 YGATSPSYSPTSPQYNPTSPRYSPTSPSYSPTSPAYSPASPAYGGGRTSPGYSPTSPAYS 1640

Query: 1605 PTSPA------YSPTSPAYSPTSPAYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSP 1657
            PTSP       YSPTSP YSP SPA+SPTSP+YSPTSP ++  TSP YSPTSP++SPTSP
Sbjct: 1641 PTSPMGATSPRYSPTSPQYSPASPAFSPTSPAYSPTSPQAFQATSPKYSPTSPAFSPTSP 1700

Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
            SYSPTSP YSPTSP YSP SP+YSPTSP YSPTS
Sbjct: 1701 SYSPTSPVYSPTSPSYSPASPAYSPTSPVYSPTS 1734



 Score =  181 bits (459), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/229 (50%), Positives = 142/229 (62%), Gaps = 16/229 (6%)

Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
             S S+SP   S +     Y       SP     SP    Y+P    +SPTSP  + TSP 
Sbjct: 1504 ASASFSPMQTSNNDEG-GYGAMPYGMSPMQGGQSP----YAPGGAGFSPTSPFATATSP- 1557

Query: 1631 YSPTSPSYSPT---SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTY 1687
            Y PTSP++      SP + P +  Y  TSPSYSPTSP Y+PTSP YSPTSPSYSPTSP Y
Sbjct: 1558 YQPTSPAWGGAGGMSP-WVPRNQGYGATSPSYSPTSPQYNPTSPRYSPTSPSYSPTSPAY 1616

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPT 1747
            SP SP+Y     + SP   YSP+SP  SP SP   TSP YSPTS  YSP SP++SP+SP 
Sbjct: 1617 SPASPAYG--GGRTSP--GYSPTSPAYSPTSPMGATSPRYSPTSPQYSPASPAFSPTSPA 1672

Query: 1748 YSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTPQT 1795
            YSP+SP      +P YSP+SP +SP++  YSP++P YSP+S S Y+P +
Sbjct: 1673 YSPTSPQAFQATSPKYSPTSPAFSPTSPSYSPTSPVYSPTSPS-YSPAS 1720


>gi|825713|emb|CAA52862.1| RNA polymerase II largest subunit [Homo sapiens]
          Length = 1970

 Score = 1784 bits (4621), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 912/1620 (56%), Positives = 1154/1620 (71%), Gaps = 112/1620 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+ ++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDLLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
            A   ES  ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1443 AAHGESYPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502

Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  G   FSP+++ 
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552

Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610



 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1853 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1911

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1963



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955


>gi|324120580|dbj|BAJ78681.1| RNA polymerase II largest subunit [Stichotrema asahinai]
          Length = 1696

 Score = 1783 bits (4617), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 942/1749 (53%), Positives = 1205/1749 (68%), Gaps = 121/1749 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A V  V+ VQFGILSPD IR MSV +  I   ET E G+PK  GL DPR G  DR  +
Sbjct: 5    SKAPVRTVKKVQFGILSPDAIRGMSVTEGGIRFPETMEAGRPKINGLMDPRQGVNDRNSR 64

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++L KP+FHIGF+   + ++R VCF CSK+L      K K+  
Sbjct: 65   CQTCAGNMTECPGHFGHIDLVKPVFHIGFLSKTIKVLRCVCFYCSKLLVSPMHPKIKEIV 124

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQ-DGEEPLKKNKGGCGAQQPKLTIEG 182
            +K +  P+ RL  + D CK+KT CEGGDE+D+  + D  +  KK  GGCG  QP +   G
Sbjct: 125  IKTKGQPRKRLLYVYDLCKSKTICEGGDEMDINKESDTIKSGKKGHGGCGRYQPVIRRSG 184

Query: 183  MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
            + + AE+K   +         E  E+K +LTAER   ++K I+DE+C ++G++PK+ARPD
Sbjct: 185  LDLSAEWKHVNE---------ESQEKKISLTAERAWEIMKHITDEECYIMGMDPKFARPD 235

Query: 243  WMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
            WMI+  +P+PP  VRP+          DDLTH+LA II+ N  L+R E +GA  H+++E 
Sbjct: 236  WMIVSAIPVPPLSVRPAVVMYGSTRNQDDLTHKLADIIKANNELQRNETSGAAVHVLAEN 295

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
             ++LQ+H+AT+ DN++PG P+A Q+SG+P+K++ +RLK KEGRIRGNLMGKRVDFSARTV
Sbjct: 296  IKMLQYHVATFIDNDIPGLPKAMQKSGKPLKALKARLKGKEGRIRGNLMGKRVDFSARTV 355

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
            ITPDP + IDQ+GVP SIA NLT+PE VTP+N +++ ELV  G    PG   AKYIIR++
Sbjct: 356  ITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFQKMMELVHRGNSQYPG---AKYIIREN 412

Query: 413  GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
            G+R+DLR+  K SD H++ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+STFR
Sbjct: 413  GERIDLRFHPKPSDLHIQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFR 472

Query: 473  LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
            +NLS T+PYNADFDGDEMN+HVPQS ETRAEV  L + P+ I++PQ+NRPVMGIVQDTL 
Sbjct: 473  MNLSCTTPYNADFDGDEMNLHVPQSMETRAEVEHLHITPRQIITPQANRPVMGIVQDTLT 532

Query: 533  GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
              RK+TKRD F+EK+  MNILM+   +DGK+P+P I+KP+P+WTGKQ+F+LIIP  +NL 
Sbjct: 533  AVRKMTKRDVFLEKEQVMNILMFLPIWDGKMPKPAIIKPKPMWTGKQIFSLIIPGNVNLI 592

Query: 593  RTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            RT + H D  D+G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+G +
Sbjct: 593  RTHSTHPDEEDEGPYRWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICYLELGHE 652

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
               +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A + 
Sbjct: 653  VCGRFYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYVEIQKAIKKAKEDVMQVIQKAHNM 712

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV AGSKGS INISQ
Sbjct: 713  ELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEHNNLKAMVVAGSKGSNINISQ 772

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            + ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGG
Sbjct: 773  VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGG 832

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQF YGEDG+    +E 
Sbjct: 833  REGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQFRYGEDGLCGEMVEF 892

Query: 889  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
            Q L +LK+    F++ FRF+   E +      ++ I DL    +     + E + L  DR
Sbjct: 893  QNLPTLKLSNRSFERNFRFDASNERYLRRVFTEDVIKDLMGSADAISELEKEWEMLVRDR 952

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
              L  +I  SG+S   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V  L E+  +
Sbjct: 953  ETL-RQIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRGLLEKCII 1011

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            V G D LS +A +NATL F  L+RST  +K V +++RL+ EAFEW+IGEIE+RF Q+ V+
Sbjct: 1012 VAGNDRLSKQANENATLLFQCLVRSTLCTKSVTEDYRLSSEAFEWLIGEIETRFQQAQVS 1071

Query: 1069 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1128
            PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+VF
Sbjct: 1072 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVF 1131

Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1188
            L        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD 
Sbjct: 1132 LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVNIYYEMPDF 1191

Query: 1189 DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
            D  P +ISPWLLRIEL+R+ M DKKL+M  ++EKI   F DDL  IFNDDNA+KL+LR+R
Sbjct: 1192 D--PTRISPWLLRIELDRKRMTDKKLTMEQISEKITSGFGDDLNIIFNDDNAEKLVLRVR 1249

Query: 1249 IMN---DEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------------------- 1286
            +MN   D     E + E  EDD+FL+ +E N+L++M L+G+                   
Sbjct: 1250 LMNNSTDNKFAEEEDVERMEDDMFLRCLEGNVLSDMTLQGIESISKVYMHLPQSDSKKRI 1309

Query: 1287 ---------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLD 1325
                                 +L+ V+   DVD  RT SN + EI  VLGIEAVR+++  
Sbjct: 1310 IITESGEYKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEK 1369

Query: 1326 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1385
            E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVDIL+
Sbjct: 1370 EMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDILM 1429

Query: 1386 DAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMT 1445
            DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K+               GM+
Sbjct: 1430 DAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKS---------------GMS 1474

Query: 1446 PARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGY 1505
                 +  T   D ++S G  +S     +P   A  +P+      S +++P  S S+   
Sbjct: 1475 -----IMQTGSADNILSMGMFYSSAG--TPAQAAANTPW------SYSNTPIGSSSAWMQ 1521

Query: 1506 SPSSPGYSPTSPGYSPTSPG-YSPTSPGYSPTSPTYSPSSPGYSP-TSPAYSPTSPSYSP 1563
            SP+S G +P    +SP+     S  SP  +P S  Y+  SP  SP      S  SP+YS 
Sbjct: 1522 SPAS-GMTPGGAAFSPSMQSEISAMSP--TPFSSPYAGQSPPMSPFIGSPRSLKSPAYSL 1578

Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
             SPS S  SP  SP    YSP + +Y      YSP + + + TSP  SP SPA S     
Sbjct: 1579 PSPSVSYASPQ-SPGFAGYSPATGTY------YSPVASNINATSPLRSPASPALS----Y 1627

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y PTSP YSP+SP+YSPTSPSYSPTSPSYSPTSP YSPTSP YSPTSPGYSPTSP+YSPT
Sbjct: 1628 YGPTSPRYSPSSPNYSPTSPSYSPTSPSYSPTSPGYSPTSPNYSPTSPGYSPTSPTYSPT 1687

Query: 1684 SPTYSPTSP 1692
            SP+YSPTSP
Sbjct: 1688 SPSYSPTSP 1696



 Score =  112 bits (281), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/215 (44%), Positives = 117/215 (54%), Gaps = 14/215 (6%)

Query: 1543 SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT--S 1600
            SS G    + A +P S S +P   S +      S  +P  +  SPS      + SPT  S
Sbjct: 1492 SSAGTPAQAAANTPWSYSNTPIGSSSAWMQSPASGMTPGGAAFSPSMQSEISAMSPTPFS 1551

Query: 1601 PSYSPTSPAYSP-TSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPS 1658
              Y+  SP  SP      S  SPAYS  SPS S  SP  SP    YSP T   YSP + +
Sbjct: 1552 SPYAGQSPPMSPFIGSPRSLKSPAYSLPSPSVSYASPQ-SPGFAGYSPATGTYYSPVASN 1610

Query: 1659 YSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS 1718
             + TSP  SP SP  S     Y PTSP YSP+SP+Y+P S  YSP+      +     + 
Sbjct: 1611 INATSPLRSPASPALS----YYGPTSPRYSPSSPNYSPTSPSYSPTSPSYSPT-----SP 1661

Query: 1719 PYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
             YSPTSPNYSPTS  YSPTSP+YSP+SP+YSP+SP
Sbjct: 1662 GYSPTSPNYSPTSPGYSPTSPTYSPTSPSYSPTSP 1696



 Score = 79.7 bits (195), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/202 (42%), Positives = 107/202 (52%), Gaps = 25/202 (12%)

Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYS 1660
            SYS T P  S ++   SP S   +P   ++SP+  S  S  SP+  P S  Y+  SP  S
Sbjct: 1507 SYSNT-PIGSSSAWMQSPAS-GMTPGGAAFSPSMQSEISAMSPT--PFSSPYAGQSPPMS 1562

Query: 1661 P-TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
            P      S  SP YS  SPS S  SP  SP    Y+P +  Y     YSP +  ++  SP
Sbjct: 1563 PFIGSPRSLKSPAYSLPSPSVSYASPQ-SPGFAGYSPATGTY-----YSPVASNINATSP 1616

Query: 1720 Y-SPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNP------DYSPSSPQYSP 1772
              SP SP  S     Y PTSP YSPSSP YSP+SP  +            YSP+SP YSP
Sbjct: 1617 LRSPASPALS----YYGPTSPRYSPSSPNYSPTSPSYSPTSPSYSPTSPGYSPTSPNYSP 1672

Query: 1773 SA-GYSPSAPGYSPSSTSQYTP 1793
            ++ GYSP++P YSP+S S Y+P
Sbjct: 1673 TSPGYSPTSPTYSPTSPS-YSP 1693


>gi|6677795|ref|NP_033115.1| DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
 gi|200794|gb|AAA40071.1| RNA polymerase II [Mus musculus]
          Length = 1932

 Score = 1781 bits (4613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 895/1581 (56%), Positives = 1132/1581 (71%), Gaps = 100/1581 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYMEGLEFGMT 1445
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        GMT
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGRSGMT 1502

Query: 1446 PARSPVSGTPYHDGM-MSPGY----LFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSP 1500
            P  +  S +   D    SPGY      +P    SP   + + P  GG       SP YSP
Sbjct: 1503 PGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGG-----AMSPSYSP 1557

Query: 1501 SSPGYSPSSPGYSPTSPGYSP 1521
            +SP Y P SPG      GY+P
Sbjct: 1558 TSPAYEPRSPG------GYTP 1572



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 87/111 (78%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+P SP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1815 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1875 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 87/111 (78%), Positives = 94/111 (84%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+P SP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1815 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1875 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  174 bits (441), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 87/111 (78%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+P SP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1815 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1875 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  173 bits (439), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 87/115 (75%), Positives = 96/115 (83%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+P SP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1815 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1875 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  163 bits (413), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 82/108 (75%), Positives = 92/108 (85%), Gaps = 3/108 (2%)

Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1553
            +SP YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSPTSP 
Sbjct: 1818 ASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPT 1877

Query: 1554 YSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1878 YSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 84/120 (70%), Positives = 93/120 (77%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+P SP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1815 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1875 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/105 (75%), Positives = 89/105 (84%), Gaps = 4/105 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            +SPTS P YSP+SP YSP+SP YSPT+P YSPTSP YSPTSP Y+PTSP YSP+SP YSP
Sbjct: 1822 YSPTS-PKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSP 1880

Query: 1550 TSPAYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1591
            TSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1881 TSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 88/130 (67%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+P SP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1815 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1862

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1863 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1907

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1908 GYSPTSPTYS 1917


>gi|126309154|ref|XP_001364909.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
            [Monodelphis domestica]
          Length = 1932

 Score = 1781 bits (4612), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 896/1581 (56%), Positives = 1132/1581 (71%), Gaps = 100/1581 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILGKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRTGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LI+P  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IADAKT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + +E + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEELVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VV+ V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVDGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            GEDPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GEDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYMEGLEFGMT 1445
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        GMT
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGRSGMT 1502

Query: 1446 PARSPVSGTPYHDGM-MSPGY----LFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSP 1500
            P  +  S +   D    SPGY      +P    SP   + + P  GG       SP YSP
Sbjct: 1503 PGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGG-----AMSPSYSP 1557

Query: 1501 SSPGYSPSSPGYSPTSPGYSP 1521
            +SP Y P SPG      GY+P
Sbjct: 1558 TSPAYEPRSPG------GYTP 1572



 Score =  177 bits (450), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1815 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1875 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  176 bits (447), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1815 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1875 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  176 bits (446), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1815 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1875 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1815 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1875 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  164 bits (415), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1815 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1873

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1874 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1815 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1875 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  140 bits (352), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1815 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1862

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1863 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1907

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1908 GYSPTSPTYS 1917


>gi|293340189|ref|XP_002724554.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
            [Rattus norvegicus]
 gi|293351610|ref|XP_002727769.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Rattus norvegicus]
          Length = 1932

 Score = 1780 bits (4611), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 895/1581 (56%), Positives = 1132/1581 (71%), Gaps = 100/1581 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDVT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYMEGLEFGMT 1445
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        GMT
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGRSGMT 1502

Query: 1446 PARSPVSGTPYHDGM-MSPGY----LFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSP 1500
            P  +  S +   D    SPGY      +P    SP   + + P  GG       SP YSP
Sbjct: 1503 PGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGG-----AMSPSYSP 1557

Query: 1501 SSPGYSPSSPGYSPTSPGYSP 1521
            +SP Y P SPG      GY+P
Sbjct: 1558 TSPAYEPRSPG------GYTP 1572



 Score =  177 bits (450), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1815 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1875 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  177 bits (449), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 88/114 (77%), Positives = 97/114 (85%), Gaps = 3/114 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1815 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P+ +
Sbjct: 1875 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPEDS 1928



 Score =  176 bits (446), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1815 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1875 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1815 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1875 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  164 bits (415), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1815 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1873

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1874 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1815 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1875 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1925



 Score =  154 bits (388), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 83/123 (67%), Positives = 94/123 (76%), Gaps = 16/123 (13%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1815 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1874

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSP 1750
            SP+Y+P S KYSP+   SP+         YSPTSP      S+YSPTSP YSP+SPTYS 
Sbjct: 1875 SPTYSPTSPKYSPT---SPT---------YSPTSPK----GSTYSPTSPGYSPTSPTYSL 1918

Query: 1751 SSP 1753
            +SP
Sbjct: 1919 TSP 1921



 Score =  140 bits (352), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1815 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1862

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1863 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1907

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1908 GYSPTSPTYS 1917


>gi|432920271|ref|XP_004079921.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Oryzias
            latipes]
          Length = 1599

 Score = 1779 bits (4608), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 913/1613 (56%), Positives = 1155/1613 (71%), Gaps = 119/1613 (7%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFGI+SPDE+++MSV    I++ ETTE G+PK  GL DPR G I+R  +C+TC  N
Sbjct: 16   IKRVQFGIISPDELKRMSVTTEGIKYPETTEGGRPKLCGLMDPRQGVIERSGRCQTCAGN 75

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+  ++ ++R VCF CSK+L D ++ K K  L      P
Sbjct: 76   MTECPGHFGHIELAKPVFHVGFISKIMKVLRCVCFFCSKLLVDSNNPKIKDILTKSKGQP 135

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            + RL  + + CK K  CEGG+E+D    V  QD EE + K KG  GCG  QP++   G++
Sbjct: 136  RKRLTHVYELCKGKNICEGGEEMDNKFGVEQQDTEEDITKEKGHGGCGRYQPRIRRSGLE 195

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+  +LG++PK+ARP+WM
Sbjct: 196  LFAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEEDLILGMDPKFARPEWM 246

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E++GA AH+I+E  +
Sbjct: 247  IVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHVIAEDVK 306

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KSI  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 307  LLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVIT 366

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP + IDQ+GVP SIA N+T+PE VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 367  PDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 423

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL++GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 424  RIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 483

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 484  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 543

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGK+PQP ILKPRPLWTGKQ+F+LIIP  IN+ RT
Sbjct: 544  RKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQIFSLIIPGHINVIRT 603

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 604  HSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 663

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q +VN WLL    SIGIGD+IADAKT   I +TI KAK +V  +I++A +  L
Sbjct: 664  RLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHNNEL 723

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV AGSKGS INISQ+ 
Sbjct: 724  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVI 783

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 784  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 843

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 844  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGENVEFQN 903

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L SLK     F+K F+F+   +      + ++ + D+ T   ++ V + E  K++ DR +
Sbjct: 904  LASLKPSNKAFEKKFKFDCTNDRALRRVLQEDVVKDVMTNAHVQSVLEKEFDKMKEDR-E 962

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            +   I  +GDS   LP NL R+IWNAQK F+++PR P+D++P+ VVE V +L ++L +V 
Sbjct: 963  ILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLIIVN 1022

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  SKR+ +E RL+ EAF+W++GEIE++F QS+  PG
Sbjct: 1023 GDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPG 1082

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTPSL+VFL 
Sbjct: 1083 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLL 1142

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1143 GQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDFDV 1202

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
               +ISPWLLRIEL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1203 T--RISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1260

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K + ++E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1261 NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1320

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1321 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1380

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHGINR DTGP+M+CSFEETVD+L++A
Sbjct: 1381 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA 1440

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYM----EGLE 1441
            A   E D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        G+ 
Sbjct: 1441 ASHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF 1500

Query: 1442 FGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPS 1501
            FG  P  SP+SG       MSP         ++P      +P  G  A+SP+   G +P 
Sbjct: 1501 FGSVP--SPMSG-------MSPA--------MTPWNTGA-TPAYG--AWSPSVGSGMTPG 1540

Query: 1502 SPGYSPSSP----GYSPT-SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            + G+SPS+     G+SP  SP +SPT PG SP SPG  P SP Y P SPG SP
Sbjct: 1541 AAGFSPSAASDASGFSPGYSPAWSPT-PG-SPGSPG--PLSP-YIP-SPGKSP 1587



 Score = 45.4 bits (106), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 61/128 (47%), Gaps = 13/128 (10%)

Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS-YSP 1633
            Y    P+  P      PT   +       S  SPA +P +   +P   A+SP+  S  +P
Sbjct: 1480 YGMEIPTNIPGISVAGPTGMFFGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTP 1539

Query: 1634 TSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT---SPTYSP 1689
             +  +SP++ S  S  SP Y   SP++SPT P  SP SPG  P SP Y P+   SP Y  
Sbjct: 1540 GAAGFSPSAASDASGFSPGY---SPAWSPT-PG-SPGSPG--PLSP-YIPSPGKSPFYHH 1591

Query: 1690 TSPSYNPQ 1697
            T    NP+
Sbjct: 1592 THHLSNPR 1599



 Score = 41.2 bits (95), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 11/117 (9%)

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP 1591
            Y    PT  P      PT   +       S  SP+ +P +   +P   ++SP+  S  +P
Sbjct: 1480 YGMEIPTNIPGISVAGPTGMFFGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTP 1539

Query: 1592 TSPSYSPTSPS-YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
             +  +SP++ S  S  SP Y   SPA+SPT P  SP SP   P SP Y P SP  SP
Sbjct: 1540 GAAGFSPSAASDASGFSPGY---SPAWSPT-PG-SPGSP--GPLSP-YIP-SPGKSP 1587



 Score = 40.4 bits (93), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 21/112 (18%)

Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPS-- 1744
            Y    P+  P  +   P+  +  S P     SP S  SP  +P ++  +P   ++SPS  
Sbjct: 1480 YGMEIPTNIPGISVAGPTGMFFGSVP-----SPMSGMSPAMTPWNTGATPAYGAWSPSVG 1534

Query: 1745 ------SPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPG----YSPS 1786
                  +  +SPS+  +A G +P YSP+   +SP+ G SP +PG    Y PS
Sbjct: 1535 SGMTPGAAGFSPSAASDASGFSPGYSPA---WSPTPG-SPGSPGPLSPYIPS 1582


>gi|358057836|dbj|GAA96338.1| hypothetical protein E5Q_03004 [Mixia osmundae IAM 14324]
          Length = 2471

 Score = 1779 bits (4607), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 969/1940 (49%), Positives = 1258/1940 (64%), Gaps = 186/1940 (9%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER----------GKPKPG 50
            M   F YS A + +VR +QFGILSP+E R +SV +I+  E  +           G+PK G
Sbjct: 1    MQNAFTYSQAPIRRVRQIQFGILSPEETRALSVAKIDSPEIYQDVGLGAGSSVGGRPKAG 60

Query: 51   GLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCS 110
            GL+DPR+GTIDR  KC+TC   MAECPGHFGH+EL +P++H+GFM  V  I+  VC  C 
Sbjct: 61   GLADPRMGTIDRNFKCQTCGEGMAECPGHFGHIELGRPVYHVGFMTKVKKILECVCVQCG 120

Query: 111  KILADEDDHKFKQALK-IRNPKNRLKKILDACKNKTKC-EGGDEIDVPGQD--------- 159
             + +D  +     A++  +NPK RLK + +    K +C     +I +   D         
Sbjct: 121  TLKSDLSELPLADAVRHTQNPKRRLKLVHEVAAKKRQCSRDAPDIQIIKDDDLTGLERRD 180

Query: 160  -------GEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTL 212
                    +E      GGCG+ QP +  EG+K+   Y    K   D +   +  + K  L
Sbjct: 181  EGRASRLAQEYYAGRHGGCGSIQPVIRKEGLKLFLVYD---KSTTDDDGGKDKSQEKVPL 237

Query: 213  TAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP-----------PVRPSDD 261
            +A R L +L+ I + D   +GL+   ARP++MILQ+LP+PPP            +R  DD
Sbjct: 238  SARRCLEILRSIPERDLDFMGLSKDEARPEYMILQILPVPPPPVRPSVSVDGGAMRSEDD 297

Query: 262  LTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 321
            LT++L  I+R N+ L + E  GA AHI+ EF QLLQ+HIATY DN+LPGQP+A Q+SGR 
Sbjct: 298  LTYKLIEILRTNQQLVKLEAEGAGAHILDEFEQLLQWHIATYMDNDLPGQPQAMQKSGRA 357

Query: 322  IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 381
            +KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP + +D++GVP SIA NLTYPE VT
Sbjct: 358  VKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPESIAKNLTYPERVT 417

Query: 382  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 441
            PYNI  L+ LV  GP   PG   A+Y+++D G R+DLRYL   +   L  G+ VERHL +
Sbjct: 418  PYNITALQALVAKGPDELPG---ARYVVKDSGDRIDLRYLPSGTSIDLAYGWIVERHLRN 474

Query: 442  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 501
            GD+VLFNRQPSLHKMS+M HR+K++PYSTFRLNLSVT PYNADFDGDEMNMHVPQS ETR
Sbjct: 475  GDYVLFNRQPSLHKMSMMAHRVKLLPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETR 534

Query: 502  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 561
            AE+ ++  VP+ IVSPQ+N+PVMGIVQDTL G RK T RD F+++D   NI++W  ++DG
Sbjct: 535  AELQQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFTLRDCFMDRDFVQNIMLWVPEWDG 594

Query: 562  KVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHA---DNDKGILTAGDTLVRIEKG 618
             +P P I+KP+P+WTGKQ+ ++ IP+ +NLF     H+   D+D G+L        ++ G
Sbjct: 595  LLPPPAIVKPKPMWTGKQILSMCIPRGVNLFIDNEAHSSLPDDDSGVL--------VDDG 646

Query: 619  ELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            E+  G + KKT+G    SL+ +I+ E GP+  R F    Q +VN+WLL N FSIGIGDT+
Sbjct: 647  EIYYGVINKKTVGAQRESLVDLIFREKGPEICRLFFTGVQKVVNFWLLHNGFSIGIGDTV 706

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
            AD  TM TI D I  AK+ V   I +AQ   +EPEPG T+ E+FE+KV   LN ARD AG
Sbjct: 707  ADRDTMRTITDYIQTAKDEVAVFISKAQQDLIEPEPGMTIRETFESKVTGSLNRARDTAG 766

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
             SA++SL+ SNN+K MV AGSKGSFINISQM+ACVGQQ VEGKRIPFGF  R+LPHFTKD
Sbjct: 767  QSAERSLAASNNVKQMVVAGSKGSFINISQMSACVGQQIVEGKRIPFGFRYRSLPHFTKD 826

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
            D+ PE+RGFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+MV
Sbjct: 827  DHTPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMV 886

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPN- 917
             YDGTVRNSLGD++QF+YGEDGMD   +E Q ++ ++     F++ +R ++ +  W+   
Sbjct: 887  NYDGTVRNSLGDIVQFVYGEDGMDGASVERQVIEPIRQSDVGFERMYRVDITDPAWSFKP 946

Query: 918  YMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQ 977
              LQ  +  L+    L+D+ D E  +L+ DR  L   I  +  + WPLPV L R+I NAQ
Sbjct: 947  GTLQAGL--LEADANLQDLLDEEYAQLQEDRALLRQFIFHNSTAQWPLPVKLFRIIQNAQ 1004

Query: 978  KTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFAS 1037
            + F ++ R PSD+ P  ++EA+  L E+L +V G D L++EAQ NA L F ILLR   A+
Sbjct: 1005 QIFNINDREPSDLRPAYIIEAIRDLSEKLVIVRGSDNLTLEAQNNAVLLFRILLRCEMAT 1064

Query: 1038 KRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 1097
            KRVL EH L+REAF+WV+GEIE+RF  S+V PGEM G +AAQSIGEPATQMTLNTFHYAG
Sbjct: 1065 KRVLHEHHLSREAFDWVVGEIEARFNASVVHPGEMCGTLAAQSIGEPATQMTLNTFHYAG 1124

Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE 1157
            VS+KNVTLGVPRL+EIIN+A  IKTPSL+V+L+PG    ++RAK+V   L + TLR++T 
Sbjct: 1125 VSSKNVTLGVPRLKEIINIADNIKTPSLTVYLQPGYARDQQRAKSVSNQLGHVTLRTITA 1184

Query: 1158 ATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAP--EKISPWLLRIELNREMMVDKKLS 1215
            + E++YDP+P  T+IE+D +FV++++ +PD+++     + SPWLLR EL+R  ++DK L+
Sbjct: 1185 SAEIFYDPEPSRTVIEDDNDFVEAFFAIPDQEVEENLHRQSPWLLRYELDRAKVLDKGLT 1244

Query: 1216 MAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIES 1275
            MA +A KI+  F  DL  I+++D A+KL++R R +  E    + + +  ++  FLK+IE+
Sbjct: 1245 MAGIASKISAVFQSDLFVIWSEDTAEKLVIRCRTLQSEEKDDDDDADEQDEVAFLKRIET 1304

Query: 1276 NMLTEMALRGV-----------------------------------NLLAVMCHEDVDAR 1300
            +ML ++ L G+                                   NL  V+  + VDAR
Sbjct: 1305 HMLDDVELGGIKGIQRVYMVDQKKQVITPAGTWGSEQEWTLETDGLNLRQVLTIDGVDAR 1364

Query: 1301 RTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1360
            RT SN ++E+  VLGIEA R ALL ELR+VI FDGSYVNYRHL++LCD MT RG LMAIT
Sbjct: 1365 RTYSNSIVEVYNVLGIEAARAALLRELRLVIEFDGSYVNYRHLSLLCDLMTNRGRLMAIT 1424

Query: 1361 RHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYL 1420
            RHGINR DTG +MRCSFEETV+IL++AA  AE DY  GV EN++LGQLAP+GTG     L
Sbjct: 1425 RHGINRADTGALMRCSFEETVEILMEAASVAEKDYCTGVAENVLLGQLAPMGTGAFDTML 1484

Query: 1421 NDEMLKNAI-ELQLPSY-MEGLEFGMTPARSPVSG----TPY--------------HDGM 1460
            + E LK  + + +LP+  M    F     R+P+ G    TPY               DG+
Sbjct: 1485 DLEALKRVVVDHRLPAMNMMDEMFMHKTGRTPLQGQGHSTPYMDVGDGRTPMVDMSFDGL 1544

Query: 1461 MSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSP--GYSPTSPG 1518
               G  FSP      + D   + Y  G   S  +SP YS   PG   +SP   YSPTSPG
Sbjct: 1545 SGAGQ-FSPVNTGEVMLDGSMTAYGFG---SGQTSP-YSIGGPGDLNTSPQGAYSPTSPG 1599

Query: 1519 YSPTSPGYSPTSP-GYSPTSPTY--SPSSP----GYSPTSPAYSPTSPS-YSPTSPSYSP 1570
            YSP SP Y PTSP     TSP +  SP+SP        TSPAYSPTSP+ YSP SP++SP
Sbjct: 1600 YSPASPSYVPTSPNAMGATSPMFRTSPTSPWVNGALGNTSPAYSPTSPNHYSPASPNFSP 1659

Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTSPAYSPTSPAYSPTSP 1629
             SP +SP+SP +SP SP++SP SP+Y+P      SPTSP +SP     SPT   YSPTSP
Sbjct: 1660 ASPRFSPSSPRFSPASPNFSPASPNYAPNGQRRASPTSPQFSPAG-HRSPTGQRYSPTSP 1718

Query: 1630 SYSPTSPSYSPTSPS--YSPTSPS-------------------YSPTSPSYSPTSPAYSP 1668
            SYSPTSP++SPTSP+  YSP + S                   YSPTSPSYSPTSPAYSP
Sbjct: 1719 SYSPTSPAFSPTSPNGLYSPAASSRGSRKGSGASAAASASARKYSPTSPSYSPTSPAYSP 1778

Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYS 1728
            TSP     +   SPTSPT SP  P              YSP SP +S     SPTSP +S
Sbjct: 1779 TSPNAMSMASKISPTSPT-SPRGPQ------------QYSPGSPAMS-----SPTSPMHS 1820

Query: 1729 PTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSP--SSPQYSPSAGYSPSAPGYSPS 1786
            P+S  +SP++      +  Y+P     AG G   YSP   SP    S+G   +A   SPS
Sbjct: 1821 PSSPRFSPSA-----GADRYAP-----AGAGR--YSPQSGSPAEPHSSGQKRTAYSASPS 1868

Query: 1787 STSQYTPQTNRDDSTTKDDK 1806
               Q+ P T++ ++    ++
Sbjct: 1869 WQQQWLPCTDQCETCQTSER 1888



 Score = 76.6 bits (187), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 75/127 (59%), Gaps = 10/127 (7%)

Query: 1696 PQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSS---SYSPTSP----SYSPSSPT 1747
            P     SP  AYSP+SP  SPASP Y PTSPN    +S     SPTSP    +   +SP 
Sbjct: 1582 PGDLNTSPQGAYSPTSPGYSPASPSYVPTSPNAMGATSPMFRTSPTSPWVNGALGNTSPA 1641

Query: 1748 YSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDK 1806
            YSP+SP +    +P++SP+SP++SPS+  +SP++P +SP+S + Y P   R  S T    
Sbjct: 1642 YSPTSPNHYSPASPNFSPASPRFSPSSPRFSPASPNFSPASPN-YAPNGQRRASPTSPQF 1700

Query: 1807 NTKGDKS 1813
            +  G +S
Sbjct: 1701 SPAGHRS 1707


>gi|426383941|ref|XP_004058535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
            [Gorilla gorilla gorilla]
          Length = 1883

 Score = 1777 bits (4603), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 895/1581 (56%), Positives = 1132/1581 (71%), Gaps = 100/1581 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
            N +  K +  +E     +DDVFL+ IESNMLT+M L+                       
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYMEGLEFGMT 1445
            A   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P        GMT
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGRSGMT 1502

Query: 1446 PARSPVSGTPYHDGM-MSPGY----LFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSP 1500
            P  +  S +   D    SPGY      +P    SP   + + P  GG       SP YSP
Sbjct: 1503 PGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGG-----AMSPSYSP 1557

Query: 1501 SSPGYSPSSPGYSPTSPGYSP 1521
            +SP Y P SPG      GY+P
Sbjct: 1558 TSPAYEPRSPG------GYTP 1572


>gi|389750938|gb|EIM92011.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Stereum
            hirsutum FP-91666 SS1]
          Length = 1703

 Score = 1777 bits (4602), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 924/1693 (54%), Positives = 1175/1693 (69%), Gaps = 120/1693 (7%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTID 61
            +F +S A + KV+ VQFGILSP+EI+  SV ++EH E  +    KPK GGL DPR+GTID
Sbjct: 5    QFTHSAAPLRKVKEVQFGILSPEEIKAYSVAKVEHPEVMDEATHKPKMGGLMDPRMGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R  KC+TC   M+ECPGHFGH+ELA+P+FH GF+  V  I+ S+C NC K+ AD  D  F
Sbjct: 65   RNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIIKVKKILESICVNCGKLKADISDPHF 124

Query: 122  KQALK-IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEE-----PLKKNKGGCGAQQ 175
               ++ +R+PK R+  +   CK K  CE     D P +DGE+     P K   GGCG  Q
Sbjct: 125  ADKIRHVRDPKTRMAVVWGHCKGKMICEA----DEPKEDGEDGAAQGPAKPGHGGCGHPQ 180

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P++  EG+K+  +YK   K  DD E +      K+  TA  V   LK+IS+ D  LLGL+
Sbjct: 181  PQIRKEGLKLFLQYK---KSKDDDEDMKSLQPDKRLFTASEVYTTLKKISESDLHLLGLS 237

Query: 236  PKYARPDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGA 284
             +YARP+WMIL V           + +    +R  DDLT++L  II+ + N+RR E+ GA
Sbjct: 238  DEYARPEWMILTVMPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDIIKASANVRRCEQEGA 297

Query: 285  PAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKR 344
            PAH+I+EF QLLQFH+ATY DN++ G P+A Q+SGRP+K+I +RLK KEGR+RGNLMGKR
Sbjct: 298  PAHVITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKR 357

Query: 345  VDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTG 404
            VDFSARTVIT DP + +D++GVP SIA+ LTYPE VTPYNIE L+ELV  GP   PG   
Sbjct: 358  VDFSARTVITGDPNLELDEVGVPKSIAMTLTYPERVTPYNIEYLQELVRNGPTTYPG--- 414

Query: 405  AKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIK 464
            A+Y++RD  +R+DLRY  K +D  L+ G+ VERHL DGDFVLFNRQPSLHKMS+M HR++
Sbjct: 415  ARYVVRDTNERIDLRY-NKRADTFLQFGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVR 473

Query: 465  IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 524
            +MPYSTFRLNLSVT PYNADFDGDEMNMHVPQS ETRAE+ ++  VP+ I+SPQ+N+PVM
Sbjct: 474  LMPYSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVM 533

Query: 525  GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLI 584
            GIVQDTL G RK T RDTF++ +   NIL+W  D+DG VP P I+KP+P+W+GKQ+ ++ 
Sbjct: 534  GIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVPDWDGSVPIPAIIKPKPMWSGKQILSMA 593

Query: 585  IPKQINLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            IP+ IN+ R+    + N   D G+L        IE GE++ G + KKT+G S G L+HV+
Sbjct: 594  IPRGINIHRSPDPKSANPVFDDGML--------IENGEIIFGIVDKKTVGASQGGLVHVV 645

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E GP+A R      Q +VNYWL  N FSIGIGDTIAD KTM  I   I++ K NV+ +
Sbjct: 646  FREKGPEATRTLFTGLQTVVNYWLFHNGFSIGIGDTIADRKTMAYITQQITERKQNVQQI 705

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
            I+ A    L+  PG T+ ESFE+KV + LN ARD++G  AQK+L E NN+K MV AGSKG
Sbjct: 706  IEDATHDRLKSMPGMTIRESFESKVERELNLARDDSGKYAQKNLKEDNNVKQMVVAGSKG 765

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            SFINISQM+ CVGQQ+VEG+RIPFGF  RTLPHFTKDD+ PE+RGFVENSYLRGLTPQEF
Sbjct: 766  SFINISQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPQEF 825

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+MV YDGTVRNSLGD+IQF+YGEDGM
Sbjct: 826  FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVNYDGTVRNSLGDLIQFVYGEDGM 885

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDA 939
            D  +IE Q +D+  +   +F+  +R ++ +    + P  +LQ  IDD  +  EL+   D 
Sbjct: 886  DGAFIERQNIDTFALNHQDFEHNYRVDVTDPAGGFLPG-VLQVGIDD--SSPELQAKLDE 942

Query: 940  EVQKLEADRYQLATEIATSGDSSWP--LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVE 997
            E  +L  DR  L   +  + D++ P  LPVNL R++ NA + F +D R+PSD+ P+ +V+
Sbjct: 943  EYDQLVEDRRTLREFVFANADANTPHYLPVNLHRIVQNATQIFHIDKRKPSDLDPVYIVD 1002

Query: 998  AVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGE 1057
            AV  L  RL +V G+D LS EAQ NATL F + LR+TFA +RVL+ H LTREAF+WV+GE
Sbjct: 1003 AVRDLANRLVIVRGDDSLSREAQDNATLNFRMHLRATFACRRVLERHHLTREAFDWVLGE 1062

Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
            +E++F  S+V PGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA
Sbjct: 1063 VETKFNMSVVNPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVA 1122

Query: 1118 KKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVE 1177
              IKTPSL+V+L+P   +   +AK +Q  L YT+LR+VT + E+WYDPDP  T+IEED  
Sbjct: 1123 TNIKTPSLTVYLQPEFAAQSSQAKTIQQELAYTSLRTVTASVEIWYDPDPTSTVIEEDKV 1182

Query: 1178 FVKSYYEMPDEDIAPEKI---SPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCI 1234
            FV+S++ +PDE++   KI   SPWLLR+EL+R  M+D+KL M  VA +I + F  DL  I
Sbjct: 1183 FVESFFAIPDEEVE-SKIHLQSPWLLRLELDRAKMIDRKLDMQFVANRIAESFKTDLFVI 1241

Query: 1235 FNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR---------- 1284
            +++DN++KL++R R++   A K +   +S E+D+FL+++E+ ML  ++LR          
Sbjct: 1242 WSEDNSEKLVIRCRVLGG-ADKEDEETDSIEEDIFLRQLENTMLNSVSLRGVKGIERVFM 1300

Query: 1285 ---------------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                       GVNL AVMC + VD  RT SN  +EI  VLGIE
Sbjct: 1301 LEHDKVVTDEKGNITGQGVKEWVLETDGVNLKAVMCMDGVDFTRTYSNSCVEIFNVLGIE 1360

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            A R A++ ELR VI FDGSYVNYRHLA+LCD MT RGHLMAITRHGINR DTG +MR SF
Sbjct: 1361 AARAAIMKELRGVIEFDGSYVNYRHLALLCDLMTQRGHLMAITRHGINRADTGALMRSSF 1420

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI---ELQLP 1434
            EETV+IL++AA   E D   G+ EN+M GQ+AP+GTG   + L+ +MLK+ I    L + 
Sbjct: 1421 EETVEILMEAAAVGERDDCHGIAENVMFGQMAPMGTGAFEVALDIDMLKDVIVDSGLPMQ 1480

Query: 1435 SYMEG-LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVG------- 1486
            S +   +  GMTP +  V+ TPY     SP +  +P+      T A FSP  G       
Sbjct: 1481 SMLSAHVGDGMTPGQ--VAMTPYDSN--SPSW--NPDGSFKGET-AAFSPLAGNREESAN 1533

Query: 1487 ----GMAFSPTSSPGYSPSSPGYSPSSPG-YSPTSPGYSPTSPGYSPTSP-GYSP--TSP 1538
                G   SP  + G SP++PGYSPSSP  YSPTSP Y P SP    TSP G SP  TSP
Sbjct: 1534 YSYLGFGQSPRGAGGMSPAAPGYSPSSPNVYSPTSP-YVPQSPFAGATSPFGASPYATSP 1592

Query: 1539 TYS---PSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1595
             YS   P+SP YSPTSPA + TSP YSPTSP YSPTSPS+SPTSP YSP SPS+SPTSP 
Sbjct: 1593 FYSGRAPTSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPR 1652

Query: 1596 YSPTSPSYSPTSP 1608
            YSPTSPS+SP SP
Sbjct: 1653 YSPTSPSFSPASP 1665



 Score =  135 bits (339), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/184 (51%), Positives = 115/184 (62%), Gaps = 23/184 (12%)

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT------SPSYSPTSPSYSPT-SPSY 1596
            +PG    +P Y   SPS++P   S+   + ++SP       S +YS      SP  +   
Sbjct: 1492 TPGQVAMTP-YDSNSPSWNPDG-SFKGETAAFSPLAGNREESANYSYLGFGQSPRGAGGM 1549

Query: 1597 SPTSPSYSPTSP-AYSPTSPAYSPTSPAYSPTSP-SYSP--TSPSYS---PTSPSYSPTS 1649
            SP +P YSP+SP  YSPTSP Y P SP    TSP   SP  TSP YS   PTSP+YSPTS
Sbjct: 1550 SPAAPGYSPSSPNVYSPTSP-YVPQSPFAGATSPFGASPYATSPFYSGRAPTSPTYSPTS 1608

Query: 1650 PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSP 1709
            P+ + TSP YSPTSP YSPTSP +SPTSP YSP SP++SPTSP Y+P     SPS  +SP
Sbjct: 1609 PALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPT----SPS--FSP 1662

Query: 1710 SSPR 1713
            +SPR
Sbjct: 1663 ASPR 1666



 Score =  128 bits (321), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/174 (51%), Positives = 108/174 (62%), Gaps = 18/174 (10%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYSP 1647
            Y   SPS++P   S+   + A+SP +      S  YS      SP  +   SP +P YSP
Sbjct: 1501 YDSNSPSWNPDG-SFKGETAAFSPLA-GNREESANYSYLGFGQSPRGAGGMSPAAPGYSP 1558

Query: 1648 TSPS-YSPTSPSYSPTSPAYSPTSP-GYSP--TSPSYS---PTSPTYSPTSPSYNPQSAK 1700
            +SP+ YSPTSP Y P SP    TSP G SP  TSP YS   PTSPTYSPTSP+ N  S  
Sbjct: 1559 SSPNVYSPTSP-YVPQSPFAGATSPFGASPYATSPFYSGRAPTSPTYSPTSPALNLTSP- 1616

Query: 1701 YSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
                  YSP+SPR SP SP +SPTSP YSP S S+SPTSP YSP+SP++SP+SP
Sbjct: 1617 -----GYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASP 1665



 Score =  101 bits (251), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/190 (42%), Positives = 105/190 (55%), Gaps = 28/190 (14%)

Query: 1617 YSPTSPAYSPTSPSYSPTSPSYSPT------SPSYSPTSPSYSPT-SPSYSPTSPAYSPT 1669
            Y   SP+++P   S+   + ++SP       S +YS      SP  +   SP +P YSP+
Sbjct: 1501 YDSNSPSWNPDG-SFKGETAAFSPLAGNREESANYSYLGFGQSPRGAGGMSPAAPGYSPS 1559

Query: 1670 SPG-YSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSP----TS 1724
            SP  YSPTSP Y P SP    TSP     ++ Y+ S  YS  +P     SP SP    TS
Sbjct: 1560 SPNVYSPTSP-YVPQSPFAGATSPF---GASPYATSPFYSGRAPTSPTYSPTSPALNLTS 1615

Query: 1725 PNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAP-- 1781
            P YSPTS  YSPTSPS+SP+SP YSP S        P +SP+SP+YSP++  +SP++P  
Sbjct: 1616 PGYSPTSPRYSPTSPSFSPTSPRYSPQS--------PSFSPTSPRYSPTSPSFSPASPRC 1667

Query: 1782 GYSPSSTSQY 1791
             Y     SQY
Sbjct: 1668 KYKYLLCSQY 1677



 Score =  101 bits (251), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/178 (42%), Positives = 105/178 (58%), Gaps = 16/178 (8%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT-SPGYSPTSPSYSP 1682
            Y   SPS++P   S+   + ++SP + +    S +YS      SP  + G SP +P YSP
Sbjct: 1501 YDSNSPSWNPDG-SFKGETAAFSPLAGNRE-ESANYSYLGFGQSPRGAGGMSPAAPGYSP 1558

Query: 1683 TSP-TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA-SPYSPTSPNYSPTSSSYSPTSPS 1740
            +SP  YSPTSP Y PQS     +  +  S    SP  S  +PTSP YSPTS + + TSP 
Sbjct: 1559 SSPNVYSPTSP-YVPQSPFAGATSPFGASPYATSPFYSGRAPTSPTYSPTSPALNLTSPG 1617

Query: 1741 YSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP-SAGYSPSAPGYSPSSTSQYTPQTNR 1797
            YSP+SP YSP+SP         +SP+SP+YSP S  +SP++P YSP+S S ++P + R
Sbjct: 1618 YSPTSPRYSPTSP--------SFSPTSPRYSPQSPSFSPTSPRYSPTSPS-FSPASPR 1666


>gi|302141712|emb|CBI18915.3| unnamed protein product [Vitis vinifera]
          Length = 1565

 Score = 1776 bits (4600), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 864/1039 (83%), Positives = 900/1039 (86%), Gaps = 105/1039 (10%)

Query: 1   MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
           MD RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPKPGGLSDPRLGTI
Sbjct: 1   MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60

Query: 61  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE---- 116
           DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMR VCFNCSKILADE    
Sbjct: 61  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADELTEN 120

Query: 117 --------------------------DDHKFKQALKIRNPKNRLKKILDACKNKTKCEGG 150
                                     +DHKFKQA KIRNPKNRLKKILDACKNK+KCEGG
Sbjct: 121 VKWISKSKFANMKSLKLGHSLLHCKSEDHKFKQAQKIRNPKNRLKKILDACKNKSKCEGG 180

Query: 151 DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
           DEI+    D +EP+KK++GGCGAQQPKLTIEGMKMIAEYK QRKKNDD EQLPEPVERKQ
Sbjct: 181 DEIETQALDSDEPVKKSRGGCGAQQPKLTIEGMKMIAEYKIQRKKNDDPEQLPEPVERKQ 240

Query: 211 TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------- 259
            L+AERVL VLKRISDEDC LLGLNPKYARPDWMILQVLPIPPPPVRPS           
Sbjct: 241 QLSAERVLNVLKRISDEDCILLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEA 300

Query: 260 -----------------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT 302
                            DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFH+AT
Sbjct: 301 SLSVLVNDRLKLSMWLWDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHVAT 360

Query: 303 YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
           YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID
Sbjct: 361 YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 420

Query: 363 QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK 422
           +LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLRYLK
Sbjct: 421 ELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLRYLK 480

Query: 423 KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 482
           KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN
Sbjct: 481 KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 540

Query: 483 ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 542
           ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT
Sbjct: 541 ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 600

Query: 543 FIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADND 602
           FIEKDVFMNILMWWEDFDGK+P P ILKPRPLWTGKQVFNLIIPKQINL RT+AWH++++
Sbjct: 601 FIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQINLLRTSAWHSESE 660

Query: 603 KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            G +T GDT VRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN
Sbjct: 661 TGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 720

Query: 663 YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
           YWLLQN FSIGIGDTIADA TME IN+TISKAKN VK LI+ AQ++ LE EPGRTMMESF
Sbjct: 721 YWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQLEAEPGRTMMESF 780

Query: 723 ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
           EN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR
Sbjct: 781 ENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 840

Query: 783 IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
           IP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET
Sbjct: 841 IPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 900

Query: 843 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
           GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q LDSLKMKK EFD
Sbjct: 901 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLDSLKMKKGEFD 960

Query: 903 KAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSS 962
           + F++E+D+ENWNP+YML E+                                       
Sbjct: 961 RVFKYEIDDENWNPSYMLPEH--------------------------------------- 981

Query: 963 WPLPVNLKRLIWNAQKTFK 981
                   RLIWNAQKTFK
Sbjct: 982 --------RLIWNAQKTFK 992



 Score =  639 bits (1648), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 413/720 (57%), Positives = 458/720 (63%), Gaps = 199/720 (27%)

Query: 1040 VLKEHRL---TREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1096
            +L EHRL    ++ F+  + +IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA
Sbjct: 977  MLPEHRLIWNAQKTFKERL-KIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1035

Query: 1097 GVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVT 1156
            GVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LKP V+ TKERAKNVQCALEYTTLRSVT
Sbjct: 1036 GVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPDVSKTKERAKNVQCALEYTTLRSVT 1095

Query: 1157 EATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSM 1216
            +ATE                                 KISPWLLRIELNREMM       
Sbjct: 1096 QATE---------------------------------KISPWLLRIELNREMM------- 1115

Query: 1217 AAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESN 1276
                                                      L DESAEDDVFLKKIE  
Sbjct: 1116 ------------------------------------------LQDESAEDDVFLKKIEK- 1132

Query: 1277 MLTEMAL--RGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1334
               E  L   GVNLLAVMCHEDVDARRTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1133 --VEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1190

Query: 1335 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1394
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AE+D
Sbjct: 1191 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1250

Query: 1395 YLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGT 1454
            +LRGVTENIMLGQLAPIGTGDC+LYLND+ML++AIELQLPSYMEGL+FGMTP+RSP++  
Sbjct: 1251 FLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTPSRSPIT-- 1308

Query: 1455 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 1514
                                                      GYSPSSPGYSP+SPGYSP
Sbjct: 1309 ------------------------------------------GYSPSSPGYSPTSPGYSP 1326

Query: 1515 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG---------------------------- 1546
            TSPGYSPTSPGYSPTSP YSP+SP YSP+SP                             
Sbjct: 1327 TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1386

Query: 1547 ------------------YSPTSPAYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSP 1587
                                 T+P + P +  + P +  + P + P      P +    P
Sbjct: 1387 YSPTSPSYTPLLLHTAPLLLLTAPPHLPIAQPHLPIARPHHPIAQPHLLIVQPLHHTAPP 1446

Query: 1588 -SYSPTSPSYSPTSPSYSPTSPAYSPTSPA-------------YSPTSPAYSPTSPSYSP 1633
              YSPTSPSY+P+S  YSP S AYSP+SP              YSPTSP+YSPTSPSYSP
Sbjct: 1447 LRYSPTSPSYNPSSAKYSP-SLAYSPSSPRLSPSSPYSPTSPNYSPTSPSYSPTSPSYSP 1505

Query: 1634 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS-YSPTSPTYSPTSP 1692
             SP+YSPTSP  S  SP YSP+SP YSP++  YSP++PGYSP+S S Y+P        SP
Sbjct: 1506 ASPTYSPTSPYNSGVSPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTPQMSNKDNGSP 1564



 Score =  115 bits (287), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 103/265 (38%), Positives = 115/265 (43%), Gaps = 90/265 (33%)

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1645
            +PS SP +  YSP+SP YSPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+Y
Sbjct: 1301 TPSRSPIT-GYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1359

Query: 1646 SPTSPSYS-------------------------------------------PTSPSYSPT 1662
            SPTSPSYS                                           P  P   P 
Sbjct: 1360 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYTPLLLHTAPLLLLTAPPHLPIAQPH 1419

Query: 1663 SPAYSPTSPGYSPTSPSYSPTSPT-----YSPTSPSYNPQSAKYSPSLAY---------- 1707
             P   P  P   P      P   T     YSPTSPSYNP SAKYSPSLAY          
Sbjct: 1420 LPIARPHHPIAQPHLLIVQPLHHTAPPLRYSPTSPSYNPSSAKYSPSLAYSPSSPRLSPS 1479

Query: 1708 -------------------------------SPSSPRLSPASPYSPTSPNYSPTSSSYSP 1736
                                           SP+SP  S  SP    S      S+ YSP
Sbjct: 1480 SPYSPTSPNYSPTSPSYSPTSPSYSPASPTYSPTSPYNSGVSPDYSPSSPQYSPSAGYSP 1539

Query: 1737 TSPSYSPSSPTYSPSSPYNAGGGNP 1761
            ++P YSPSS +       N   G+P
Sbjct: 1540 SAPGYSPSSTSQYTPQMSNKDNGSP 1564


>gi|45935333|gb|AAS79688.1| RNA polymerase II large subunit [Ephedra viridis]
          Length = 1013

 Score = 1776 bits (4599), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 835/1013 (82%), Positives = 918/1013 (90%), Gaps = 13/1013 (1%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLELAKPM+HIGF+KTVLSI+R VCFNCS+ILADE+DH+FKQA+K++NPK+RLK++LD C
Sbjct: 1    HLELAKPMYHIGFLKTVLSILRCVCFNCSRILADEEDHRFKQAMKVKNPKHRLKRVLDCC 60

Query: 142  KNKTKCEGGDEIDV-PGQDGEEPLKKN-KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            KNKTKCEGGD I+    QD +E +KK   GGCG+QQPK+TI+GMK+IAEY+A RKK D+Q
Sbjct: 61   KNKTKCEGGDSIEEDQAQDADEEVKKKPHGGCGSQQPKITIDGMKIIAEYRAPRKKADEQ 120

Query: 200  EQL-PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP-------- 250
            +QL PEPVERKQ LTAERVL +LKRISDE+CQ+LG +P++ARPDWMILQVLP        
Sbjct: 121  DQLMPEPVERKQQLTAERVLNILKRISDEECQMLGFDPQFARPDWMILQVLPIPPPPVRP 180

Query: 251  --IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
              +     R  DDLTHQLAMIIRHNE L++QE+NGAPAHI++EFAQLLQFH+ATYFDNEL
Sbjct: 181  SVMMNSTSRSEDDLTHQLAMIIRHNETLKKQEKNGAPAHIVTEFAQLLQFHVATYFDNEL 240

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
            PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP INIDQLGVPW
Sbjct: 241  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPW 300

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIALNLTYPE VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK+SSDHH
Sbjct: 301  SIALNLTYPEVVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKRSSDHH 360

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD
Sbjct: 361  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 420

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMNMHVPQSFETRAE+LELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV
Sbjct: 421  EMNMHVPQSFETRAEILELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 480

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
            FMNILMWWEDFDGKVP P ILKPRP+WTGKQVFNLIIPKQINL R +AWH ++D+G LT 
Sbjct: 481  FMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKQINLVRYSAWHNESDRGHLTL 540

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            GDT+VRIEKGE+++GTLCKKTLG S+GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 
Sbjct: 541  GDTVVRIEKGEVITGTLCKKTLGASSGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQ 600

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FS+GIGDTIADA TM+TIN+TI  AK  V+ LI++     LE EPGRT++ESFEN+VNQ
Sbjct: 601  GFSMGIGDTIADATTMDTINETIQDAKIKVQELIEKYMAHKLEQEPGRTLLESFENQVNQ 660

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
            VLN ARD+AG+SAQ+SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP+GF 
Sbjct: 661  VLNKARDDAGNSAQRSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPYGFQ 720

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             RTLPHF KDD GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR
Sbjct: 721  GRTLPHFVKDDKGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 780

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKAMEDIMVKYD TVRNSLGDVIQFLYGEDGMD+V IESQ LD LKMKK EFD+ F+ E
Sbjct: 781  LVKAMEDIMVKYDATVRNSLGDVIQFLYGEDGMDAVRIESQKLDHLKMKKKEFDETFKHE 840

Query: 909  MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
            + +ENW+P YML E  DD+K I E +DV  AE +KL+ DR QL  EIA +G++SWPLPVN
Sbjct: 841  LGQENWHPTYMLPEMADDIKNISEFQDVLVAEYKKLQLDRRQLGMEIAPTGENSWPLPVN 900

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            LKRLIWNAQK FKVDPR+ SDM P+E+V+ +DKLQERLKVVPG+DPLS EAQKNATLFFN
Sbjct: 901  LKRLIWNAQKIFKVDPRKTSDMQPLEIVDTIDKLQERLKVVPGDDPLSFEAQKNATLFFN 960

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            ILLRS FASKRVLKE+ LTREAF+WVIGE+E+RFLQSLVAPGEMIGCVAAQSI
Sbjct: 961  ILLRSVFASKRVLKEYHLTREAFDWVIGEVENRFLQSLVAPGEMIGCVAAQSI 1013


>gi|324120546|dbj|BAJ78664.1| RNA polymerase II largest subunit [Forficula hiromasai]
          Length = 1744

 Score = 1775 bits (4598), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 905/1648 (54%), Positives = 1157/1648 (70%), Gaps = 106/1648 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ---IEHGETTERGKPKPGGLSDPRLGTIDRKM 64
            S A +  V+ VQFGILSPDE+R+MSV     I   ET E G+PK GGL DPR G +DR  
Sbjct: 6    SKAPIRTVKRVQFGILSPDEVRRMSVTTEGGIRFSETYEGGRPKLGGLMDPRQGVMDRIT 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            +C+TC  N  ECPGHFGH+ELAKP+FHIGF+   + I+R VCF CSK+L    + K K+ 
Sbjct: 66   RCQTCAGNQVECPGHFGHIELAKPVFHIGFLVKAIKILRCVCFYCSKLLVSPTNPKIKEV 125

Query: 125  -LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK----GGCGAQQPKL 178
             +K +  P+ RL  + D CK K  CEGGDEID+P ++ EE L + K    GGCG  QP +
Sbjct: 126  VMKTKGQPRKRLVYVYDLCKGKNICEGGDEIDMPKENQEEALARGKKVGHGGCGRYQPSI 185

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
               G+ + AE+K     N+D +      E+K  LTA+RV  + K I+DE+C +LG++PK+
Sbjct: 186  RRSGLDLTAEWK---HVNEDSQ------EKKIVLTAQRVWEIFKHITDEECFILGMDPKF 236

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARPDWMIL VLP+PP  VRP+          DDLTH+L+ II+ N  L+  E+ G   H+
Sbjct: 237  ARPDWMILTVLPVPPLAVRPAVVMYGSARNQDDLTHKLSDIIKANNELQHNEQAGGATHV 296

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ++E  +LLQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFS
Sbjct: 297  LAENIKLLQFHVATLIDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 356

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVITPDP + IDQ+GVP SIA N+T+PE VTP+N+ +++ELV+ G    PG   AKYI
Sbjct: 357  ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNLSKMQELVQRGNSQYPG---AKYI 413

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            +RD+G R+DLR+  K+SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+
Sbjct: 414  VRDNGDRIDLRFHPKTSDLHLQCGYKVERHVGDGDLVIFNRQPTLHKMSMMGHRVKVLPW 473

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQ
Sbjct: 474  STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQ 533

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL   RK+TKRD F+EK+  MN+LM+   +DGK+PQP ILKP+PLWTGKQ+F+LIIP  
Sbjct: 534  DTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQLFSLIIPGN 593

Query: 589  INLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
            +NL RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E
Sbjct: 594  VNLIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICYLE 653

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
            +G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++
Sbjct: 654  LGHELCGQFYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQK 713

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS I
Sbjct: 714  AHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNI 773

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FH
Sbjct: 774  NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFH 833

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+   
Sbjct: 834  AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDSTVRNSVGQLIQLRYGEDGLCGE 893

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
             +E Q L ++K+    F+K FRF+   E        ++ + +L    E+    + E ++L
Sbjct: 894  IVEFQNLPTIKLSNKSFEKKFRFDPTNERQLRRIFNEDVVRELMGSGEVISELEREWEQL 953

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
              DR  L  +I  SG+S   LP NL+R+IWN QK F ++ R P+D+ P++V++ V+++ +
Sbjct: 954  SKDREAL-RQIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLKVIQGVNEMLK 1012

Query: 1005 RLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
            +  +V GED LS +A +NATL F  L+RST  S+ V +E RL+ EAFEW+IGEIE+RF Q
Sbjct: 1013 KCVIVAGEDYLSKQANENATLLFQCLVRSTLCSRLVSEEFRLSSEAFEWLIGEIETRFRQ 1072

Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS 1124
            +  +PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PS
Sbjct: 1073 AQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132

Query: 1125 LSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
            L+VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYE
Sbjct: 1133 LTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIHEDQEFVNVYYE 1192

Query: 1185 MPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            MPD D  P++ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+
Sbjct: 1193 MPDFD--PQRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLV 1250

Query: 1245 LRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV--------------- 1286
            LRIRIMN +  K +  +E+    EDD+FL+ IE+NML++M L+G+               
Sbjct: 1251 LRIRIMNSDENKMQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1310

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     +++ V+   DVD  RT SN + EI  VLGIEAVR+
Sbjct: 1311 KKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRK 1370

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS--YMEG 1439
            D+LLDAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  +E+ +P    M G
Sbjct: 1431 DVLLDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDSEKCKAGMEIPMPHAHMMGG 1490

Query: 1440 LEFGM------TPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPT 1493
            L  GM      TP+ SP + TP+  G  +PGY  S     SP          GG +FSP+
Sbjct: 1491 LGAGMFFSSATTPSMSP-NNTPWSQGA-TPGYPHS----WSPGNALGTGMTPGGPSFSPS 1544

Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1553
             +   S  SPGYS           G+SP     S   P  SP  P+   +SPGYSPTSPA
Sbjct: 1545 GASDASGMSPGYS-----------GWSPQPGSPSSPGPSMSPYIPSPMGASPGYSPTSPA 1593

Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1581
            ++PTSPS +PTSP+YSPTSPSYSPTSP+
Sbjct: 1594 FAPTSPSLTPTSPNYSPTSPSYSPTSPN 1621



 Score = 72.8 bits (177), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/122 (39%), Positives = 62/122 (50%), Gaps = 40/122 (32%)

Query: 1534 SPTSPTYSP--------SSPGY-------SPTSPAYSPTSPSYSPTSPS-YSPTSPSYS- 1576
            S T+P+ SP        ++PGY       +      +P  PS+SP+  S  S  SP YS 
Sbjct: 1499 SATTPSMSPNNTPWSQGATPGYPHSWSPGNALGTGMTPGGPSFSPSGASDASGMSPGYSG 1558

Query: 1577 -----------------------PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
                                     SP YSPTSP+++PTSPS +PTSP+YSPTSP+YSPT
Sbjct: 1559 WSPQPGSPSSPGPSMSPYIPSPMGASPGYSPTSPAFAPTSPSLTPTSPNYSPTSPSYSPT 1618

Query: 1614 SP 1615
            SP
Sbjct: 1619 SP 1620



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/142 (37%), Positives = 72/142 (50%), Gaps = 31/142 (21%)

Query: 1597 SPTSPSYSPTSPAYSP-TSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYS- 1653
            S T+PS SP +  +S   +P Y  +    +      +P  PS+SP+  S  S  SP YS 
Sbjct: 1499 SATTPSMSPNNTPWSQGATPGYPHSWSPGNALGTGMTPGGPSFSPSGASDASGMSPGYSG 1558

Query: 1654 -----PTSPSYSPTSPAYSPT----SPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
                  +  S  P+   Y P+    SPGYSPTSP+++PTSP+ +PTSP+Y          
Sbjct: 1559 WSPQPGSPSSPGPSMSPYIPSPMGASPGYSPTSPAFAPTSPSLTPTSPNY---------- 1608

Query: 1705 LAYSPSSPRLSPASPYSPTSPN 1726
               SP+SP       YSPTSPN
Sbjct: 1609 ---SPTSP------SYSPTSPN 1621


>gi|281352199|gb|EFB27783.1| hypothetical protein PANDA_013866 [Ailuropoda melanoleuca]
          Length = 1989

 Score = 1775 bits (4598), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 912/1639 (55%), Positives = 1154/1639 (70%), Gaps = 131/1639 (7%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYK-----VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            R+DLR+  K SD HL+ GYK     VERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+S
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKAFPPQVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWS 485

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQD
Sbjct: 486  TFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQD 545

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK TKRD F+E+   MN+LM+   +DGKVPQP +LKPRPLWTGKQ+F+LI+P  I
Sbjct: 546  TLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAVLKPRPLWTGKQIFSLIVPGHI 605

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            N  RT + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+
Sbjct: 606  NCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEM 665

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G D  R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A
Sbjct: 666  GHDVTRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKA 725

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS IN
Sbjct: 726  HNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKIN 785

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHA
Sbjct: 786  ISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHA 845

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    
Sbjct: 846  MGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGES 905

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E Q L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++ 
Sbjct: 906  VEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMR 965

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++
Sbjct: 966  EDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKK 1024

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
            L +V G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q+
Sbjct: 1025 LVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQA 1084

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
            +  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL
Sbjct: 1085 IAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSL 1144

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +VFL        ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEM
Sbjct: 1145 TVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEM 1204

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PD D+A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+L
Sbjct: 1205 PDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVL 1262

Query: 1246 RIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGVN--------------- 1287
            RIRIMN +  K +  +E     +DDVFL+ IESNMLT+M L+G+                
Sbjct: 1263 RIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVSPTPPHPRHH 1322

Query: 1288 LLAVMCH---------------------------------------EDVDARRTTSNHLI 1308
             L V  H                                       +DVD  RTTSN ++
Sbjct: 1323 PLQVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIV 1382

Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRND 1368
            EI  VLGIEAVR+AL  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR D
Sbjct: 1383 EIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQD 1442

Query: 1369 TGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNA 1428
            TGP+M+CSFEETVD+L++AA   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  
Sbjct: 1443 TGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYG 1502

Query: 1429 IEL--QLPSYME----GLEFGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVT 1477
            +E+   +P        G+ FG  P  SP+ G     TP++ G  +P Y        SP  
Sbjct: 1503 MEIPTNIPGLGAAGPTGMFFGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSV 1554

Query: 1478 DAQFSPYVGGMAFSPTSSPGYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSP 1531
             +  +P  G   FSP+++   S  SPGYSP+      SPG    S  Y P SPG    SP
Sbjct: 1555 GSGMTP--GAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSP 1610

Query: 1532 GYSPTSPTYSPSSP-GYSP 1549
             YSPTSP Y P SP GY+P
Sbjct: 1611 SYSPTSPAYEPRSPGGYTP 1629



 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1872 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1931

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1932 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1982



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1872 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1931

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1932 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1982



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1872 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1931

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1932 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1982



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1872 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1931

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1932 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1982



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1872 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1930

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1931 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1982



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1872 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1931

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1932 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1982



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1872 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1919

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1920 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1964

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1965 GYSPTSPTYS 1974


>gi|405965007|gb|EKC30438.1| DNA-directed RNA polymerase II subunit RPB1 [Crassostrea gigas]
          Length = 3055

 Score = 1774 bits (4596), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 925/1747 (52%), Positives = 1181/1747 (67%), Gaps = 133/1747 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV    I + E TE G+PK GGL DPR GTIDR  +
Sbjct: 7    SNAPLRDVKKVQFGILSPDEIRRMSVTDGGIRYSEVTEGGRPKLGGLMDPRQGTIDRSAR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  N++ECPGHFGH+ELAKP+FHIGF+   + I+R VCF CSK+L D  + K K+ L
Sbjct: 67   CQTCAGNISECPGHFGHIELAKPVFHIGFLVKTIKILRCVCFFCSKLLVDPTNPKIKEIL 126

Query: 126  KIRN--PKNRLKKILDACKNKTKCEGGDEIDVP--GQDGEE-PLKKNKGGCGAQQPKLTI 180
                  P+ RL  + D CK++  CEGGDE+D    G++ +E   KK  GGCG  QPK+  
Sbjct: 127  SKSKAYPRKRLVAVYDLCKSRKVCEGGDEMDNAKLGEETQEGDQKKGHGGCGRYQPKIKR 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+++IAE+K     N+D +      E+K  LTA+RV  + KRISD++CQ+LG++ +Y+R
Sbjct: 187  TGLELIAEWK---DTNEDSQ------EKKIVLTADRVHEIFKRISDDECQVLGMDHRYSR 237

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMI+ V+P+PP  VRP+          DDLTH+LA II+ N  LRR E+NGA +HIIS
Sbjct: 238  PDWMIVTVMPVPPLAVRPAVVMFGSARNQDDLTHKLADIIKANNQLRRNEQNGAASHIIS 297

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQ+H+AT+ DNELPG P+A Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSAR
Sbjct: 298  EDMKMLQYHVATFTDNELPGLPKAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFSAR 357

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA N+T+PE VTP+NI+R++ELV  G +  PG   AKYIIR
Sbjct: 358  TVITPDPNLRIDQVGVPRSIAQNMTFPELVTPFNIDRMQELVRRGANQYPG---AKYIIR 414

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  K+SD HL++GYKVERH+ D D+++FNRQP+LHKMS+M H++K++P+ST
Sbjct: 415  DNGERIDLRFHPKASDLHLQIGYKVERHMQDNDYIVFNRQPTLHKMSMMCHKVKVLPWST 474

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVT+PYNADFDGDEMN+H+PQS ET+AE+  L +VP+ I++PQ+NRPVMGIVQDT
Sbjct: 475  FRLNLSVTTPYNADFDGDEMNLHLPQSLETKAEISNLALVPRMIITPQANRPVMGIVQDT 534

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD F+++   MN+LM+   +DG VPQP ILKP+PLWTGKQ+F+L+IP + N
Sbjct: 535  LTAVRKMTKRDVFLDRGQVMNLLMFLPRWDGHVPQPAILKPKPLWTGKQLFSLVIPGRTN 594

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
              RT + H D  DKG    ++ GDT V IE G L+SG LCKKTLGTS+GSL HV++ E G
Sbjct: 595  CIRTHSTHPDEEDKGPYKWISPGDTKVLIEDGMLISGILCKKTLGTSSGSLAHVVFMEYG 654

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
               A +  GH Q LVN WLL    SIGIGDTIAD +T   I DTI KAK++V  +I++A 
Sbjct: 655  WVIAGEMYGHIQTLVNNWLLLEGHSIGIGDTIADPQTYIDIQDTIKKAKHDVIEVIEKAH 714

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FEN VN++LN ARD+ GS AQKSLS+ NN KAMV AGSKGS INI
Sbjct: 715  NDDLEPTPGNTLRQTFENMVNRILNDARDKTGSKAQKSLSDYNNFKAMVVAGSKGSKINI 774

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 834

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MVKYDGTVRN +  ++Q  YGEDG+D+  +
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVKYDGTVRNQVEQLVQLRYGEDGLDATHV 894

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E QT+ +LK     F++ F+F+   E      + +E I DL          D E ++L  
Sbjct: 895  EFQTMPTLKPSNRAFERQFKFDATNERNMKKCLSEEVIKDLMGDALAVSQLDREWEQLRE 954

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L + I  +GDS   LP NL+R+IWNAQK F++D  +P+D+HP++VVE V+ L +RL
Sbjct: 955  DRDILRS-IFPTGDSKVVLPCNLQRMIWNAQKIFRIDTHKPTDLHPIKVVEGVEDLCKRL 1013

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             VV G D LS++A  NATL F  L+RST  +KRV +E RL+ EAFEW+IGE+ESRF Q+ 
Sbjct: 1014 IVVAGGDRLSIQANANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEWLIGEVESRFQQAQ 1073

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
              PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN++KK KTPSL+
Sbjct: 1074 AHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLT 1133

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            V+L        E+AK+V C LE+TTLR VT  T ++YDPDP  T+I ED E+V  YYEMP
Sbjct: 1134 VYLIGQAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEWVNVYYEMP 1193

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D++  KIS WLLRIEL+R+ M DKKL+M  ++EKI   F DDL CIFNDDNA+KL+LR
Sbjct: 1194 DFDVS--KISAWLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLR 1251

Query: 1247 IRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGVN---------------- 1287
            IRIMN +  K +  +E     EDDVFL+ IE+N+L++M L+G+                 
Sbjct: 1252 IRIMNSDESKMQNEEEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKK 1311

Query: 1288 ------------------------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
                                    L+ V+   DVD  RTT+N ++E+  +LGIEAVR+++
Sbjct: 1312 RISITEEGEFKAVAEWILETDGTALMKVLSQRDVDPIRTTTNDIVEVFSILGIEAVRKSI 1371

Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
              E+  VISFDGSYVNYRHL++LCD+MT +GHLMAITRHGINR +TG + RCSFEETVDI
Sbjct: 1372 EKEMNHVISFDGSYVNYRHLSLLCDSMTAKGHLMAITRHGINRQETGALARCSFEETVDI 1431

Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFG 1443
            L++AA   E D ++GV+E I++GQLA IGTG   L L+ E  K               +G
Sbjct: 1432 LMEAASHGEMDPMKGVSECIIVGQLARIGTGCFDLLLDAEKCK---------------YG 1476

Query: 1444 MTPARSPVSGTPYHDGMMSPGYLF----SPNLRLSPVTDAQFSPYVGGM------AFSPT 1493
            M    +  +G P   G +  G  F    SP   +SP    Q +P+  G       A+SP 
Sbjct: 1477 MEIPTAIGAGMP---GGIGTGLFFGAGASPAAGMSP----QMTPWQQGATPAYASAWSPG 1529

Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPT-SPGYSPTSPGYSPTSPTYSPSSPG------ 1546
               G +P + G+SPS+   S  SPGYSP  SP   P SPG  P SP Y PS  G      
Sbjct: 1530 VGSGMTPGAAGFSPSAASESGYSPGYSPAWSP--QPGSPG--PASP-YIPSPVGGGMSPS 1584

Query: 1547 -------YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSPSYS 1597
                   Y P+SPA +P SP YSPT     P +    P  T      T P          
Sbjct: 1585 YSPASPSYVPSSPAGTPQSPGYSPTITVQLPPATLRLPRVTHQQAQVTPPLLQAILQQVL 1644

Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
             T      T+ A   T      T+        +   T+P   PT P  +P  P    ++P
Sbjct: 1645 HTVLLVHHTARALQATLQLAPVTAQQVQVILRAVQNTAPQVLPT-PQLAPLIPPAHHSTP 1703

Query: 1658 SYSPTSP 1664
             + P  P
Sbjct: 1704 HHLPNIP 1710



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 24/118 (20%)

Query: 1642 SPSYSPTSPSYSPT-SPSYSP-TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
            SP  +P     +P  + ++SP      +P + G+SP++ S S  SP Y   SP+++PQ  
Sbjct: 1508 SPQMTPWQQGATPAYASAWSPGVGSGMTPGAAGFSPSAASESGYSPGY---SPAWSPQ-- 1562

Query: 1700 KYSPSLAYSPSSPRLSPASPYSPT------SPNYSPTSSSYSPTSPSYSPSSPTYSPS 1751
                     P SP   PASPY P+      SP+YSP S SY P+SP+ +P SP YSP+
Sbjct: 1563 ---------PGSP--GPASPYIPSPVGGGMSPSYSPASPSYVPSSPAGTPQSPGYSPT 1609



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 69/142 (48%), Gaps = 24/142 (16%)

Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPT 1730
            PG   T   +   +   +  SP   P     +P+ A S  SP +   S  +P +  +SP+
Sbjct: 1488 PGGIGTGLFFGAGASPAAGMSPQMTPWQQGATPAYA-SAWSPGV--GSGMTPGAAGFSPS 1544

Query: 1731 SSSYSPTSPSYSPS-SP---TYSPSSPYN---AGGG--------NPDYSPSSPQYSPSAG 1775
            ++S S  SP YSP+ SP   +  P+SPY     GGG        +P Y PSSP     AG
Sbjct: 1545 AASESGYSPGYSPAWSPQPGSPGPASPYIPSPVGGGMSPSYSPASPSYVPSSP-----AG 1599

Query: 1776 YSPSAPGYSPSSTSQYTPQTNR 1797
             +P +PGYSP+ T Q  P T R
Sbjct: 1600 -TPQSPGYSPTITVQLPPATLR 1620


>gi|241301792|ref|XP_002407502.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
            scapularis]
 gi|215497181|gb|EEC06675.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
            scapularis]
          Length = 1937

 Score = 1774 bits (4596), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1650 (55%), Positives = 1161/1650 (70%), Gaps = 145/1650 (8%)

Query: 8    SPAEVAKVRMVQFGILS-PDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKM 64
            S A + +V+ VQFGILS PDEIR+MSV    I++ E  E G+PK GGL DPR G IDR  
Sbjct: 11   SKATLREVKRVQFGILSKPDEIRRMSVTDGGIKYPEIYEGGRPKLGGLMDPRQGVIDRTS 70

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            +C+TC  +M ECPGHFGH+ELAKP+FH GF+   + I+R VCF CSK+L   ++ K K+ 
Sbjct: 71   RCQTCAGSMTECPGHFGHIELAKPVFHCGFLTKTIKILRCVCFYCSKLLVSPNNPKIKEI 130

Query: 125  L-KIR-NPKNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKN-KGGCGAQQPK 177
            + K R  P+ +L  + D CK K  CEGGDEID    V  Q  EE  KK   GGCG  QP 
Sbjct: 131  VAKTRGQPRKQLSFVYDLCKGKNICEGGDEIDTKMGVENQGAEEAAKKQGHGGCGRYQPS 190

Query: 178  LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
            +   G+ + AE+K     N+D +      E+K  LTAERV  + +++S+E+CQ+LG++P+
Sbjct: 191  IRRSGLDLTAEWK---HVNEDSQ------EKKVVLTAERVWEIFRQVSEEECQILGMDPR 241

Query: 238  YARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAH 287
            + +PDWM++ VLP+PP  VRP+          DDLTH+LA I++ N  L R E++GA AH
Sbjct: 242  FTKPDWMLITVLPVPPLAVRPAVVMFGSARNQDDLTHKLADIVKANNELIRNEQSGAAAH 301

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            II+E  ++LQFH+AT  DNE+PG PRA Q+SGRP+KSI  RLK+KEGRIRGNLMGKRVDF
Sbjct: 302  IIAETLKMLQFHVATLVDNEMPGLPRAMQKSGRPLKSIKQRLKSKEGRIRGNLMGKRVDF 361

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVITPDP + ID++GVP SIA NLT+PE VTP+N++++ ELV  G +  PG   AKY
Sbjct: 362  SARTVITPDPNLRIDEVGVPRSIAQNLTFPEIVTPFNMDKMHELVRRGNNQYPG---AKY 418

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            IIRD+G+R+DLR+  K+SD HL+ GY+VERH+ +GD ++FNRQP+LHKMS+MGHRIK++P
Sbjct: 419  IIRDNGERIDLRFHPKASDLHLQCGYRVERHVRNGDIIVFNRQPTLHKMSMMGHRIKVLP 478

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            +STFR+NLSVT+PYNADFDGDEMN+HVPQS ETRAEV +L MVP+ I++PQSN+PVMGIV
Sbjct: 479  WSTFRMNLSVTTPYNADFDGDEMNLHVPQSLETRAEVEQLAMVPRQIITPQSNKPVMGIV 538

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL   RK+TKRD F+EKD  M ILM+   +DGK+P P ILKP+PLWTGKQ+F+LIIP 
Sbjct: 539  QDTLTAVRKMTKRDIFLEKDQMMTILMFLPIWDGKMPMPAILKPKPLWTGKQIFSLIIPG 598

Query: 588  QINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
             +NL RT + H D  D G    ++ GDT V IE GEL+SG +CKKT+G S+GSL+HV++ 
Sbjct: 599  NVNLIRTHSTHPDEEDDGPYKWISPGDTKVLIEHGELISGIVCKKTVGASSGSLMHVVFN 658

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
            E+G   A  F GH Q +VN WLL    +IGIGDTIAD +T   I +TI KAK++V ++I+
Sbjct: 659  ELGHQVAGLFYGHIQTVVNAWLLLEGHTIGIGDTIADKQTFIDIKNTIEKAKHDVIDVIE 718

Query: 704  QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
            +A +  LEP PG T+ ++FEN+VN++LN ARD+ G+SAQKSLSE NN KAMV +G+KGS 
Sbjct: 719  KAHNDELEPSPGNTLRQTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMVVSGAKGSK 778

Query: 764  INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
            INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 779  INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF 838

Query: 824  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
            HAMGGREGLIDTAVKT+ETGYIQRRL+KAME +M+ YDGTVRNS   VIQ  YGEDG+D 
Sbjct: 839  HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIAYDGTVRNSNSQVIQLRYGEDGLDG 898

Query: 884  VWIE--------SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRD 935
            V ++        SQ   +L++                   P Y+ + + +D+  ++EL  
Sbjct: 899  VAVDPFGGSLIWSQPKATLRLSVPSLRA------------PRYLRKVFTEDV--VRELMG 944

Query: 936  V------FDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSD 989
                    + E ++L+ DR  L T I  +GDS   LP NL+R++WNAQK F+V+ R P+D
Sbjct: 945  SATAVSELEKEWERLKRDREALRT-IFPTGDSKVVLPCNLQRMLWNAQKIFRVNLRSPTD 1003

Query: 990  MHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTRE 1049
            + P+ VV+ V++L ++L +VPGED LS++A +NATL F  LLR+T  SKRV +E RL+ E
Sbjct: 1004 LSPLRVVQGVEELVKKLVIVPGEDHLSIQANENATLLFRSLLRATLCSKRVAEEFRLSTE 1063

Query: 1050 AFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPR 1109
            +FEW++GEIE+RF QS   PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPR
Sbjct: 1064 SFEWLLGEIETRFHQSQGQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPR 1123

Query: 1110 LREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMG 1169
            L+EIIN++KK KTPSL+VFL        E+AK+V C LE+TTLR VT  T ++YDPDP  
Sbjct: 1124 LKEIINISKKPKTPSLTVFLTGAAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQN 1183

Query: 1170 TIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDD 1229
            T+I ED EFV  YYEMPD D  P +IS WLLR+EL+R+ M DKKL+M  +AEKIN  F D
Sbjct: 1184 TVIAEDQEFVNVYYEMPDFD--PTRISTWLLRVELDRKRMTDKKLTMEQIAEKINAGFGD 1241

Query: 1230 DLTCIFNDDNADKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV 1286
            DL CIFNDDNA+KL+LRIRIMN++  K +  +E     EDDVFL+ IE+NML++M L+G+
Sbjct: 1242 DLNCIFNDDNAEKLVLRIRIMNNDGSKYQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGI 1301

Query: 1287 ----------------------------------------NLLAVMCHEDVDARRTTSNH 1306
                                                    +L+ V+   DVD  RT SN 
Sbjct: 1302 EAITKVYMHLPTTDNKKRIVLTETGEFKAIAEWLLETDGTSLMRVLSERDVDPVRTYSND 1361

Query: 1307 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1366
            + EI  VLGIEAVR+A+  E+  VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR
Sbjct: 1362 ICEIFAVLGIEAVRKAVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1421

Query: 1367 NDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLK 1426
             DTG +MRCSFEETVD+LLDAA  AE DYL+GV+ENI++GQLA +GTG   L L+ E  K
Sbjct: 1422 QDTGALMRCSFEETVDVLLDAASHAEVDYLKGVSENIIMGQLARMGTGCFDLMLDAEKCK 1481

Query: 1427 NAIE--LQLPSYME----GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQ 1480
              IE  + LP  M     G+ FG   A +P++G       MSP        +++P     
Sbjct: 1482 YGIEIPMNLPGMMGPLGPGVFFG--SAATPLAG-------MSP--------QMTPWGQGA 1524

Query: 1481 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSP----GYSPTSPGYSPTSPGYSPT--SPGYS 1534
               Y  G  +SP    G +P + G+SPS+     GYSP S G    SPG+SP   SP  S
Sbjct: 1525 TPSY--GSGWSPGLGSGMTPGAAGFSPSAASDASGYSPASAGL---SPGWSPQPGSPASS 1579

Query: 1535 PTSPTY-SPSSPGYSPTSPAYSPTSPSYSP 1563
            P SP   SP SP YSP+SPAY+P+SPS +P
Sbjct: 1580 PASPYIPSPVSPNYSPSSPAYAPSSPSMTP 1609



 Score =  139 bits (350), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/103 (71%), Positives = 81/103 (78%), Gaps = 11/103 (10%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            YSPTSP+Y+P+SP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPT
Sbjct: 1845 YSPTSPTYTPSSPKYSPTSPQYSPTSPQYSPTSPKYSPTSPKYSPTSPTYSPTSPKYSPT 1904

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSP 1725
            SPTYSPTSP  +          +YSP+SP  SP+SP YSPTSP
Sbjct: 1905 SPTYSPTSPKGS----------SYSPTSPGYSPSSPTYSPTSP 1937



 Score =  137 bits (345), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 80/102 (78%), Gaps = 9/102 (8%)

Query: 1638 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
            YSPTSP+Y+P+SP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSPTYSPTSP Y+P 
Sbjct: 1845 YSPTSPTYTPSSPKYSPTSPQYSPTSPQYSPTSPKYSPTSPKYSPTSPTYSPTSPKYSPT 1904

Query: 1698 SAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
            S        YSP+SP+    S YSPTSP YSP+S +YSPTSP
Sbjct: 1905 SP------TYSPTSPK---GSSYSPTSPGYSPSSPTYSPTSP 1937



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/112 (59%), Positives = 78/112 (69%), Gaps = 23/112 (20%)

Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
            YSPTSP Y+P+SP YSPTSP YSPTSP Y+P S KYSP+      SP+      YSPTSP
Sbjct: 1845 YSPTSPTYTPSSPKYSPTSPQYSPTSPQYSPTSPKYSPT------SPK------YSPTSP 1892

Query: 1726 NYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
             YSPTS  YSPTSP+YSP+SP   +YSP+S        P YSPSSP YSP++
Sbjct: 1893 TYSPTSPKYSPTSPTYSPTSPKGSSYSPTS--------PGYSPSSPTYSPTS 1936



 Score =  106 bits (265), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/115 (56%), Positives = 78/115 (67%), Gaps = 26/115 (22%)

Query: 1680 YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTS 1738
            YSPTSPTY+P+SP Y             SP+SP+ SP SP YSPTSP YSPTS  YSPTS
Sbjct: 1845 YSPTSPTYTPSSPKY-------------SPTSPQYSPTSPQYSPTSPKYSPTSPKYSPTS 1891

Query: 1739 PSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
            P+YSP+SP YSP+SP         YSP+SP+ S    YSP++PGYSPSS + Y+P
Sbjct: 1892 PTYSPTSPKYSPTSP--------TYSPTSPKGS---SYSPTSPGYSPSSPT-YSP 1934


>gi|170100352|ref|XP_001881394.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164644073|gb|EDR08324.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1742

 Score = 1774 bits (4596), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 938/1703 (55%), Positives = 1179/1703 (69%), Gaps = 113/1703 (6%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTID 61
            +F YS A + KV+ VQFGILSP+EI+ +SV +IEH E  +    KPK GGL DPR+GTID
Sbjct: 5    QFAYSAAPIRKVKEVQFGILSPEEIKAISVAKIEHPEVMDEATHKPKMGGLMDPRMGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R  KC+TC   M+ECPGHFGH+ELA+P+FH GF+  V  I+ S+C NC K+ AD  D  F
Sbjct: 65   RNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIIKVKKILESICVNCGKLKADILDPNF 124

Query: 122  KQALK-IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE--EPLKKNKGGCGAQQPKL 178
               ++ IR+PK R+  +   CK KT CE  D  +  G D E  EP KK  GGCG  QP++
Sbjct: 125  ADKIRHIRDPKTRMAVVWAHCKTKTTCETDDPKE-EGADAENDEP-KKGHGGCGHSQPQI 182

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              EG+K+  +YK  +  +D  ++L  P E         V  V K++SD D  LLGL+ +Y
Sbjct: 183  RKEGLKLFLQYKKPKDDDDPDKRLITPSE---------VYTVFKKMSDHDLHLLGLSDEY 233

Query: 239  ARPDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
            ARP+WMIL V           + +    +R  DDLT++L  II+ + N+RR E+ GAPAH
Sbjct: 234  ARPEWMILTVMPVPPPPVRPSIAVDGGAMRSEDDLTYKLGDIIKASANVRRCEQEGAPAH 293

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            +I+EF QLLQFH+ATY DN++ G P+A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDF
Sbjct: 294  VITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 353

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVIT DP + +D++GVP SIA+NLTYPE VTPYNI  L+ELV  GP   PG   A+Y
Sbjct: 354  SARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTAYPG---ARY 410

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            ++RD G+R+DLRY  K +D  L+ G+ VERHL DGDFVLFNRQPSLHKMS+M HR+K+M 
Sbjct: 411  VVRDTGERIDLRY-NKRADAFLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMY 469

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            YSTFRLNLSVT PYNADFDGDEMNMHVPQS ETRAE+ ++  VP+ I+SPQ+N+PVMGIV
Sbjct: 470  YSTFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIV 529

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL G RK T RDTF++ +   NIL+W  ++DG VP P ILKP+PLWTGKQ+ +L IP+
Sbjct: 530  QDTLCGIRKFTLRDTFLDWNQVQNILLWVPEWDGSVPIPAILKPKPLWTGKQILSLAIPR 589

Query: 588  QINLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
             IN+ R+    + N   D G+L        IE GEL+ G + KKT+G S G L+HV++ E
Sbjct: 590  GINIHRSPDPKSSNPVFDDGVL--------IENGELIFGIVEKKTVGASQGGLVHVVFRE 641

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
             GP+A R+     Q +VNYWL  N FSIGIGDTIAD  TM  I  TI+ +K NV  +I  
Sbjct: 642  KGPEATRQLFTGLQMVVNYWLFHNGFSIGIGDTIADRGTMSYITQTIADSKANVAKIIND 701

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            A    L+  PG T+ ESFE+ V + LN ARD +G  AQK L E NN+K MV AGSKGSFI
Sbjct: 702  ATHDRLKAAPGMTIRESFESLVERQLNLARDTSGQYAQKHLKEDNNVKQMVVAGSKGSFI 761

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQM+ CVGQQ+VEG+RIPFGF  RTLPHFTKDD+ PESRGFVENSYLRGLTPQEFFFH
Sbjct: 762  NISQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPESRGFVENSYLRGLTPQEFFFH 821

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AM GREGLIDTAVKT+ETGYIQRRLVKA+ED+MV YDGTVRNSLGD+IQF+YGEDGMD  
Sbjct: 822  AMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLIQFVYGEDGMDGA 881

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQ 942
            +IE QT+++  +   EF+  +R ++ +    + P  +LQ  IDD  +  EL+   D E  
Sbjct: 882  FIEKQTIETFGLDDKEFEHNYRVDVTDPTGGFLPG-VLQVGIDD--SSLELQSKLDEEFA 938

Query: 943  KLEADRYQLATEIATSGDSSWP--LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            +L  DR  L   I     ++ P  LPVNL R++ NA + F +D R+PSD+ P  +V+ V+
Sbjct: 939  RLVEDRRLLRHFIFPRVPTTQPHYLPVNLHRIVQNAIQIFHIDRRKPSDLEPGYIVDGVN 998

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
            +L  RL VV G+DPLS EAQ NATL F + LR+TFAS+RVL++  LTREAF+WV+GE+E+
Sbjct: 999  ELCGRLVVVRGDDPLSREAQLNATLTFRMHLRATFASRRVLEKFHLTREAFDWVMGEVET 1058

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            +F QS+V PGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA  I
Sbjct: 1059 KFNQSVVHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNI 1118

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            KTPSL+V L P +  +   AKNVQ  L YT+LR+VT A E+WYDPDP  TIIEED  FV+
Sbjct: 1119 KTPSLTVHLDPEIAVSSSLAKNVQQELAYTSLRTVTAAVEIWYDPDPSSTIIEEDSVFVE 1178

Query: 1181 SYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDD 1238
            S++ +PDE+I  +    SPWLLR+EL+R  M+D+KL+M  VA +I + F  DL  I+++D
Sbjct: 1179 SFFAIPDEEIESKLHLQSPWLLRLELDRAKMIDRKLTMHYVASRIAESFKTDLFVIWSED 1238

Query: 1239 NADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------- 1284
            N++KL++R R++   A K +  + + E+D+FL+++E+ ML  ++LR              
Sbjct: 1239 NSEKLVIRCRVLG-SADKEDDGNGTIEEDIFLRQLENTMLNSVSLRGVKGINRVFLMEND 1297

Query: 1285 -----------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                   GVNL  VMC + VD +RT SN  +EI  VLGIEA R 
Sbjct: 1298 KITIAKDGSIKNGQEKEWVLETDGVNLKTVMCIDGVDFKRTYSNSCVEIFNVLGIEAARA 1357

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            A++ ELR VI FDGSYVNYRHLA+LCD MT+RG LMAITRHGINR DTG +MRCSFEETV
Sbjct: 1358 AIMKELRGVIEFDGSYVNYRHLALLCDLMTHRGTLMAITRHGINRADTGALMRCSFEETV 1417

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI---ELQLPSYME 1438
            +IL++AA   E D   GV EN+M GQ+AP+GTG   + L+ +MLK+AI    L + S + 
Sbjct: 1418 EILMEAAAVGEKDDCHGVAENVMFGQMAPMGTGAFEVALDIDMLKDAIVDHRLPVQSMLA 1477

Query: 1439 G-LEFGMTPARSPVSGTPY-------HDGMMS---PGYLFSPNLRLSPVTDAQFSPYVGG 1487
              ++ GMTP +  V+ TPY       HD +         FSP L  +   DA    Y+ G
Sbjct: 1478 AQIDGGMTPGQ--VAMTPYDTNSPVWHDNLFKGDPASASFSP-LASNGGEDAANFQYL-G 1533

Query: 1488 MAFSPTSSPGYSPSSPGYSPSSPG-YSPTSPGYSPTSPGYSPTSP-GYSP--TSPTYSPS 1543
               SP  + G SP  PGYSPSSP  YSPTSP + P SP    TSP G SP   SP Y PS
Sbjct: 1534 FGQSPLGAGGMSPGGPGYSPSSPNVYSPTSPSFVPQSPFGGATSPFGTSPYAASPYYDPS 1593

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1603
            +   +PTSP YSPTSP+ + TSP YSPTSP YSPTSPS+SPTSP YSP SPS+SPTSP Y
Sbjct: 1594 A--RNPTSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRY 1651

Query: 1604 SPTSPAYSPTSPAYSPTSPAYSP 1626
            SPTSP++SP SP     S  Y P
Sbjct: 1652 SPTSPSFSPASPRCKFLSIIYEP 1674



 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/211 (44%), Positives = 114/211 (54%), Gaps = 25/211 (11%)

Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
            G +P   A +P    Y   SP +        P S S+SP + +    + ++       SP
Sbjct: 1483 GMTPGQVAMTP----YDTNSPVWHDNLFKGDPASASFSPLASNGGEDAANFQYLGFGQSP 1538

Query: 1606 T-SPAYSPTSPAYSPTSP-AYSPTSPSYSPTSPSYSPTSP-SYSP--TSPSYSPTSPSYS 1660
              +   SP  P YSP+SP  YSPTSPS+ P SP    TSP   SP   SP Y P++   +
Sbjct: 1539 LGAGGMSPGGPGYSPSSPNVYSPTSPSFVPQSPFGGATSPFGTSPYAASPYYDPSA--RN 1596

Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP- 1719
            PTSP YSPTSP  + TSP YSPTSP YSPTSPS+             SP+SPR SP SP 
Sbjct: 1597 PTSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSF-------------SPTSPRYSPQSPS 1643

Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSP 1750
            +SPTSP YSPTS S+SP SP     S  Y P
Sbjct: 1644 FSPTSPRYSPTSPSFSPASPRCKFLSIIYEP 1674



 Score =  112 bits (281), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/179 (43%), Positives = 103/179 (57%), Gaps = 16/179 (8%)

Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSP 1668
            Y   SP +        P S S+SP + +    + ++       SP  +   SP  P YSP
Sbjct: 1494 YDTNSPVWHDNLFKGDPASASFSPLASNGGEDAANFQYLGFGQSPLGAGGMSPGGPGYSP 1553

Query: 1669 TSPG-YSPTSPSYSPTSPTYSPTSP-SYNPQSAK--YSPSLAYSPSSPRLSPASP-YSPT 1723
            +SP  YSPTSPS+ P SP    TSP   +P +A   Y PS A +P+SP  SP SP  + T
Sbjct: 1554 SSPNVYSPTSPSFVPQSPFGGATSPFGTSPYAASPYYDPS-ARNPTSPTYSPTSPALNLT 1612

Query: 1724 SPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAP 1781
            SP YSPTS  YSPTSPS+SP+SP YSP S        P +SP+SP+YSP++  +SP++P
Sbjct: 1613 SPGYSPTSPRYSPTSPSFSPTSPRYSPQS--------PSFSPTSPRYSPTSPSFSPASP 1663


>gi|301628367|ref|XP_002943327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like, partial
            [Xenopus (Silurana) tropicalis]
          Length = 1946

 Score = 1772 bits (4590), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 900/1618 (55%), Positives = 1148/1618 (70%), Gaps = 120/1618 (7%)

Query: 20   FGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECP 77
            FG LSP   ++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  NM ECP
Sbjct: 1    FGCLSPQ--KRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECP 58

Query: 78   GHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL--KIRNPKNRLK 135
            GHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      PK RL 
Sbjct: 59   GHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDANNPKIKDILIKSKGQPKKRLT 118

Query: 136  KILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMKMIAEY 189
             + + CK K  CEGG+E+D    V   +G+E ++K KG  GCG  QP++   G+++ AE+
Sbjct: 119  HVYELCKGKNICEGGEEMDNKFGVEQTEGDEDIQKEKGHGGCGRYQPRIRRTGLELYAEW 178

Query: 190  KAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL 249
            K     N+D +      E+K  L+ ERV  + KRI+DE+C +LG++P++ARP+W+I+ VL
Sbjct: 179  K---HVNEDSQ------EKKILLSPERVHEIFKRITDEECFILGMDPRFARPEWLIVTVL 229

Query: 250  PIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFH 299
            P+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +LLQFH
Sbjct: 230  PVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFH 289

Query: 300  IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTI 359
            +AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVITPDP +
Sbjct: 290  VATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNL 349

Query: 360  NIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLR 419
            +IDQ+GVP SIA N+T+PE VTP+NI+RL+ELV  G    PG   AKYIIRD+G R+DLR
Sbjct: 350  SIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGDRIDLR 406

Query: 420  YLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTS 479
            +  K SD HL++GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLNLSVT+
Sbjct: 407  FHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTT 466

Query: 480  PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 539
            PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   RK TK
Sbjct: 467  PYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTK 526

Query: 540  RDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHA 599
            RD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LI+P  IN  RT + H 
Sbjct: 527  RDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINCIRTHSTHP 586

Query: 600  DN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLG 655
            D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  R F  
Sbjct: 587  DDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYS 646

Query: 656  HTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPG 715
            + Q ++N WLL    +IGIGD+IADAKT + I +TI KAK +V  +I++A +  LEP PG
Sbjct: 647  NIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPG 706

Query: 716  RTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQ 775
             T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ A VGQ
Sbjct: 707  NTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQ 766

Query: 776  QNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 835
            QNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDT
Sbjct: 767  QNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDT 826

Query: 836  AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLK 895
            AVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q L +LK
Sbjct: 827  AVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEGVEFQNLATLK 886

Query: 896  MKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEI 955
                 F+K F+F+   E      + ++ + ++ +   +++  + E +K++ DR  L   I
Sbjct: 887  PSNKAFEKKFKFDYANERALRRTLQEDVVKEILSDAHVQNELEKEFEKMKEDREVLRV-I 945

Query: 956  ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPL 1015
              +GDS   LP NL+R+IWNAQK F ++ R PSD+HP++VVE V +L ++L +V G+DPL
Sbjct: 946  FPTGDSKVVLPCNLQRMIWNAQKIFHINTRMPSDLHPIKVVEGVRELSKKLVIVNGDDPL 1005

Query: 1016 SVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGC 1075
            S +AQ+NATL FNI LRST  S+R+++E RL+ EAF+W++GEIES+F Q++  PGEM+G 
Sbjct: 1006 SRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGEIESKFNQAVAHPGEMVGA 1065

Query: 1076 VAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNS 1135
            +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL      
Sbjct: 1066 LAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSAR 1125

Query: 1136 TKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKI 1195
              ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+   +I
Sbjct: 1126 DAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVSEDQEWVNVYYEMPDFDVT--RI 1183

Query: 1196 SPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAP 1255
            SPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIMN E  
Sbjct: 1184 SPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSEEN 1243

Query: 1256 KGELNDE---SAEDDVFLKKIESNMLTEMALR---------------------------- 1284
            K +  +E     +DDVFL+ IESNMLT+M L+                            
Sbjct: 1244 KMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGE 1303

Query: 1285 ------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
                        GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL  VIS
Sbjct: 1304 FKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVIS 1363

Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
            FDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++AA   E
Sbjct: 1364 FDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGE 1423

Query: 1393 SDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVS 1452
            SD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E  +P+ + GL  G  P      
Sbjct: 1424 SDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKFGME--IPTNIPGLGAG-GPTGMFFG 1480

Query: 1453 GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPG- 1511
              P   G MSP         ++P      +P  G  A+SP+   G +P + G+SPS+   
Sbjct: 1481 TAPSPMGGMSPA--------MTPWNQGA-TPAYG--AWSPSIGSGMTPGAAGFSPSAASD 1529

Query: 1512 YSPTSPGYSPT-------------------SPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
             S  SPGYSP                    SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1530 ASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPG-GAMSPSYSPTSPAYEPRSPGGYTP 1586



 Score =  177 bits (450), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1829 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1888

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1889 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1939



 Score =  176 bits (447), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1829 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1888

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1889 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1939



 Score =  176 bits (446), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1829 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1888

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1889 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1939



 Score =  166 bits (421), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/127 (68%), Positives = 98/127 (77%), Gaps = 16/127 (12%)

Query: 1617 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1829 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1888

Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSP 1736
            SP+YSPTSP YSPTSP+Y             SP+SP+    S YSPTSP YSPTS +YS 
Sbjct: 1889 SPTYSPTSPKYSPTSPTY-------------SPTSPK---GSTYSPTSPGYSPTSPTYSL 1932

Query: 1737 TSPSYSP 1743
            TSP+ SP
Sbjct: 1933 TSPAISP 1939



 Score =  164 bits (415), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1829 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1887

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1888 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1939



 Score =  154 bits (389), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 83/123 (67%), Positives = 94/123 (76%), Gaps = 16/123 (13%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1829 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1888

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSP 1750
            SP+Y+P S KYSP+   SP+         YSPTSP      S+YSPTSP YSP+SPTYS 
Sbjct: 1889 SPTYSPTSPKYSPT---SPT---------YSPTSPK----GSTYSPTSPGYSPTSPTYSL 1932

Query: 1751 SSP 1753
            +SP
Sbjct: 1933 TSP 1935



 Score =  138 bits (347), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 93/134 (69%), Gaps = 20/134 (14%)

Query: 1659 YSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS 1718
            Y+PTSP YSPTSP YSPTSP YSPTSPTYSPT+P Y             SP+SP  SP S
Sbjct: 1829 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKY-------------SPTSPTYSPTS 1875

Query: 1719 P-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GY 1776
            P Y+PTSP YSPTS +YSPTSP YSP+SPTYSP+SP  +      YSP+SP YSP++  Y
Sbjct: 1876 PVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGS-----TYSPTSPGYSPTSPTY 1930

Query: 1777 SPSAPGYSPSSTSQ 1790
            S ++P  SP  + +
Sbjct: 1931 SLTSPAISPDDSDE 1944


>gi|326672374|ref|XP_003199653.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Danio rerio]
          Length = 1921

 Score = 1771 bits (4588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 895/1582 (56%), Positives = 1136/1582 (71%), Gaps = 101/1582 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 16   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERSGRCQTCAGN 75

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+  ++ ++R VCF CSK+L D ++ K K  L      P
Sbjct: 76   MTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDANNPKIKDILTKSKGQP 135

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLK-KNKGGCGAQQPKLTIEGMKM 185
            + RL  + D CK K  CEGG+E+D    V   + E+  K K  GGCG  QP++   G+++
Sbjct: 136  RKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPESEDITKEKGHGGCGRYQPRIRRSGLEL 195

Query: 186  IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
             AE+K     N+D +      E+K  L+ ERV  + KRI+DE+  +LG++PKYARP+WMI
Sbjct: 196  YAEWK---HVNEDSQ------EKKILLSPERVHEIFKRIADEEDIILGMDPKYARPEWMI 246

Query: 246  LQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
            + VLP+PP  VRP+          DDLTH+LA I++ N  L+R E++GA AH+I+E  +L
Sbjct: 247  VTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLKRNEQSGAAAHVIAEDVKL 306

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQFH+AT  DNELPG PRA Q+SGRP+KSI  RLK KEGR+RGNLMGKRVDFSARTVITP
Sbjct: 307  LQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFSARTVITP 366

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP + IDQ+GVP SIA N+T+PE VTP+NI+RL+ELV  G    PG   AKYIIRD+G R
Sbjct: 367  DPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGDR 423

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
            +DLR+  K SD HL++GYKVERH+ DGD ++FNRQP+LHKMS+MGHR++I+P+STFRLNL
Sbjct: 424  IDLRFHPKPSDLHLQIGYKVERHMCDGDIIVFNRQPTLHKMSMMGHRVRILPWSTFRLNL 483

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            SVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   R
Sbjct: 484  SVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVR 543

Query: 536  KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
            K TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT 
Sbjct: 544  KFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINAIRTH 603

Query: 596  AWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 651
            + H D  D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  R
Sbjct: 604  STHPDEEDSGPYKNISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITR 663

Query: 652  KFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711
             F  + Q +VN WLL    SIGIGD+IAD  T + I +TI KAK +V  +I++A +  LE
Sbjct: 664  LFYSNIQTVVNNWLLIEGHSIGIGDSIADKATYQDIQNTIKKAKQDVIEVIEKAHNNELE 723

Query: 712  PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 771
            P PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV AGSKGS INISQ+ A
Sbjct: 724  PTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINISQVIA 783

Query: 772  CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 831
             VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREG
Sbjct: 784  VVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREG 843

Query: 832  LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL 891
            LIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q +
Sbjct: 844  LIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAVEFQNM 903

Query: 892  DSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL 951
             +LK     F+K F+F+   E      + ++ + D+ T   ++   + E +K+  DR ++
Sbjct: 904  ATLKPSHKAFEKKFKFDYANERALRRTLQEDVVKDVMTNAHVQSSLEREFEKMREDR-EI 962

Query: 952  ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG 1011
               I  +GDS   LP NL R+IWNAQK F+++PR P+D++P  VV+ V +L ++L +V G
Sbjct: 963  LRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRAPTDLNPARVVDGVKELSKKLVIVNG 1022

Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
            +D LS +AQ+NATL FNI LRST  SKR+ +E RL+ EAF+W++GEIE++F QS+  PGE
Sbjct: 1023 DDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGE 1082

Query: 1072 MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKP 1131
            M+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTPSL+VFL  
Sbjct: 1083 MVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLG 1142

Query: 1132 GVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIA 1191
                  ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+ 
Sbjct: 1143 QAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVTEDQEWVNVYYEMPDFDVT 1202

Query: 1192 PEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMN 1251
              +ISPWLLRIEL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIMN
Sbjct: 1203 --RISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMN 1260

Query: 1252 -DEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------------------- 1284
             DE    E   +  +DDVFL+ IESNMLT+M L+                          
Sbjct: 1261 SDENKFQEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITED 1320

Query: 1285 --------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
                          GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL  V
Sbjct: 1321 GEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHV 1380

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            ISFDGSYVNYRHLA+LCDTMT RGHLMAITRHGINR DTGP+M+CSFEETVD+L++A+  
Sbjct: 1381 ISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEASSH 1440

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYMEGLEFGMTPAR 1448
             ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P    G+ FG  P  
Sbjct: 1441 GESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGITTGMFFGSAP-- 1498

Query: 1449 SPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSP 1503
            SP+SG     TP++ G  +P Y        SP   +  +P  G   FSP+++   S  SP
Sbjct: 1499 SPMSGMSPAMTPWNTG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAASDASGFSP 1550

Query: 1504 GYSPSSPGYSPTSPGYSPTSPG 1525
            GYSP+   +SPT PG SP SPG
Sbjct: 1551 GYSPA---WSPT-PG-SPGSPG 1567



 Score =  175 bits (443), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 85/104 (81%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP YSPTSP+Y+PTSP YSPT
Sbjct: 1806 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1865

Query: 1642 SPSYSPTSPSYSPTSPSYSPTSP---AYSPTSPGYSPTSPSYSP 1682
            SP+YSPTSP YSPTSP+YSPTSP    YSPTSPGYSPTSP+YSP
Sbjct: 1866 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1909



 Score =  173 bits (439), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 93/104 (89%), Gaps = 3/104 (2%)

Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1806 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1865

Query: 1614 SPAYSPTSPAYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YSP
Sbjct: 1866 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1909



 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/104 (80%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1806 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1865

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSP 1647
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YSP
Sbjct: 1866 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1909



 Score =  171 bits (433), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/104 (79%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1592
            Y+PTSP YSP+SP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1806 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1865

Query: 1593 SPSYSPTSPSYSPTSPAYSPTSP---AYSPTSPAYSPTSPSYSP 1633
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSP+YSP
Sbjct: 1866 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1909



 Score =  170 bits (430), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 83/104 (79%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1655
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1806 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1865

Query: 1656 SPSYSPTSPAYSPTSPGYSPTSP---SYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+Y+P
Sbjct: 1866 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1909



 Score =  170 bits (430), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 83/104 (79%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1806 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1865

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSP 1619
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YSP
Sbjct: 1866 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1909



 Score =  168 bits (425), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 82/107 (76%), Positives = 93/107 (86%), Gaps = 3/107 (2%)

Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP+Y+PTSP YSPT
Sbjct: 1806 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1865

Query: 1663 SPAYSPTSPGYSPTSPSYSPTSP---TYSPTSPSYNPQSAKYSPSLA 1706
            SP YSPTSP YSPTSP+YSPTSP   TYSPTSP Y+P S  YSP+++
Sbjct: 1866 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAIS 1912



 Score =  167 bits (423), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 82/104 (78%), Positives = 92/104 (88%), Gaps = 3/104 (2%)

Query: 1498 YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT 1557
            Y+P+SP YSP+SP YSPTSP YSPTSP YSPT+P YSPTSPTYSP+SP Y+PTSP YSPT
Sbjct: 1806 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1865

Query: 1558 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1598
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YSP
Sbjct: 1866 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1909



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 81/105 (77%), Positives = 91/105 (86%), Gaps = 4/105 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSPTY+P+SP YSP
Sbjct: 1806 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSP 1864

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1591
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YSP
Sbjct: 1865 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSP 1909



 Score =  151 bits (381), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/111 (72%), Positives = 89/111 (80%), Gaps = 10/111 (9%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP- 1703
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP+Y P S KYSP 
Sbjct: 1806 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPT 1865

Query: 1704 SLAYSPSSPRLSPASPYSPTSPNYSPTS---SSYSPTSPSYSPSSPTYSPS 1751
            S  YSP+SP+      YSPTSP YSPTS   S+YSPTSP YSP+SPTYSP+
Sbjct: 1866 SPTYSPTSPK------YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPA 1910


>gi|322801476|gb|EFZ22137.1| hypothetical protein SINV_09846 [Solenopsis invicta]
          Length = 1905

 Score = 1769 bits (4581), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 899/1637 (54%), Positives = 1142/1637 (69%), Gaps = 107/1637 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGI+SPDEIR+MSV    I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRTVKRVQFGIISPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L +  + K K+  
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVNPHNPKIKEIV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE---EPLKKNKGGCGAQQPKLTI 180
            +K +  P+ RL  + D CK+K  CEGGDE+D+  ++ E   +  K   GGCG  QP L  
Sbjct: 126  MKTKGQPRKRLAFVYDLCKSKNICEGGDEMDINKENTENQPQDRKPGHGGCGRYQPNLRR 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ + AE+K     N+D +      E+K  L+AER   +LK I DE+  +LG++PK+AR
Sbjct: 186  SGLDVTAEWK---HVNEDSQ------EKKTILSAERAFEILKHIKDEESFILGMDPKFAR 236

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMI+ VLP+PP  VRP+          DDLTH+LA II+ N  L R E++GA AH+IS
Sbjct: 237  PDWMIVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELLRNEQSGAAAHVIS 296

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 297  ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ LV  G    PG   AKYI+R
Sbjct: 357  TVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPG---AKYIVR 413

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  KSSD HL+ GY+VERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 414  DNGERIDLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWST 473

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 474  FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDT 533

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD FIEK+  MN+LM+   +DGK+PQP ILKP+PLWTGKQ+F+LIIP  +N
Sbjct: 534  LTAVRKMTKRDVFIEKEQMMNLLMFLPSWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVN 593

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E+G
Sbjct: 594  MIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELG 653

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A 
Sbjct: 654  HEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 713

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 714  NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 773

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETV 893

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E Q L ++K+    F+K F+F+   E +      ++ + ++    E+    + E ++L  
Sbjct: 894  EFQNLPTIKVSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNR 953

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L  EI  SG+S   LP NL+R+IWN QK F ++ R P+D+ PM V++ V  L E+ 
Sbjct: 954  DRTVL-REIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKNLLEKC 1012

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +V G+D LS +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+ 
Sbjct: 1013 IIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQ 1072

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
            V+PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+
Sbjct: 1073 VSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 1132

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL        E+AKNV C LE+TTL+ VT  T ++YDPDP  T+I ED EFV  YYEMP
Sbjct: 1133 VFLTGAAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMP 1192

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D  P KISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LR
Sbjct: 1193 DFD--PTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLR 1250

Query: 1247 IRIMNDEAPKGELNDESA----EDDVFLKKIESNMLTEMALRGV---------------- 1286
            IRIMN +  K +  DE      EDD+FL+ IE+NML++M L+G+                
Sbjct: 1251 IRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1310

Query: 1287 ------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                    +L+ V+   DVD  RT SN + EI +VLGIEAVR++
Sbjct: 1311 KRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1370

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            +  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD
Sbjct: 1371 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1430

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM----- 1437
            +LLDAA  AE D +RGV+ENI++GQL  IGTG   L L+ E  K+ IE+ +         
Sbjct: 1431 VLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKSGIEIPMAVGAGMMGT 1490

Query: 1438 EGLEFGMTPARSPVS--GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSS 1495
             G+ FG   + S +S   TP+     +PGY  S    +SP   +  +P  GG  FSP+ +
Sbjct: 1491 AGMFFGSVTSMSSMSPQMTPWMGA--TPGYGAS---SMSPALSSGMTP--GGACFSPSGA 1543

Query: 1496 PGYSPSSPGYSPSSPGYS------------PTSPGYSPTSPGYSPTSPGYSPTSPTYSPS 1543
               S  SP YS  SP               P SP     SP YSPTSP Y PTSP+ +PS
Sbjct: 1544 SDASGLSPAYSAYSPQPGSPGSPGPSMSPFPMSPA-GAASPSYSPTSPAYLPTSPSMTPS 1602

Query: 1544 SPGYSPTSPAYSPTSPS 1560
            SP YSPTSP YSPTSP+
Sbjct: 1603 SPNYSPTSPTYSPTSPN 1619


>gi|296201388|ref|XP_002748007.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
            [Callithrix jacchus]
          Length = 1937

 Score = 1768 bits (4580), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 905/1604 (56%), Positives = 1141/1604 (71%), Gaps = 112/1604 (6%)

Query: 31   MSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKP 88
            MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  NM ECPGHFGH+ELAKP
Sbjct: 1    MSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKP 60

Query: 89   MFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NPKNRLKKILDACKNKTK 146
            +FH+GF+   + ++R VCF CSK+L D ++ K K  L      PK RL  + D CK K  
Sbjct: 61   VFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNI 120

Query: 147  CEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
            CEGG+E+D    V   +G+E L K KG  GCG  QP++   G+++ AE+K     N+D +
Sbjct: 121  CEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWK---HVNEDSQ 177

Query: 201  QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS- 259
                  E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WMI+ VLP+PP  VRP+ 
Sbjct: 178  ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAV 231

Query: 260  ---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPG 310
                     DDLTH+LA I++ N  LRR E+NGA AH+I+E  +LLQFH+AT  DNELPG
Sbjct: 232  VMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPG 291

Query: 311  QPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSI 370
             PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVITPDP ++IDQ+GVP SI
Sbjct: 292  LPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSI 351

Query: 371  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 430
            A N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G R+DLR+  K SD HL+
Sbjct: 352  AANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGDRIDLRFHPKPSDLHLQ 408

Query: 431  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 490
             GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLNLSVT+PYNADFDGDEM
Sbjct: 409  TGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEM 468

Query: 491  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
            N+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   RK TKRD F+E+   M
Sbjct: 469  NLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVM 528

Query: 551  NILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKG---IL 606
            N+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT + H D+ D G    +
Sbjct: 529  NLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI 588

Query: 607  TAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 666
            + GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  R F  + Q ++N WLL
Sbjct: 589  SPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLL 648

Query: 667  QNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKV 726
                +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  LEP PG T+ ++FEN+V
Sbjct: 649  IEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQV 708

Query: 727  NQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 786
            N++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ A VGQQNVEGKRIPFG
Sbjct: 709  NRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFG 768

Query: 787  FVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 846
            F  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQ
Sbjct: 769  FKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQ 828

Query: 847  RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFR 906
            RRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q L +LK     F+K FR
Sbjct: 829  RRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFR 888

Query: 907  FEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLP 966
            F+   E      + ++ + D+ +   +++  + E +++  DR  L   I  +GDS   LP
Sbjct: 889  FDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRV-IFPTGDSKVVLP 947

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
             NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V G+DPLS +AQ+NATL 
Sbjct: 948  CNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLL 1007

Query: 1027 FNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1086
            FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PGEM+G +AAQS+GEPAT
Sbjct: 1008 FNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPAT 1067

Query: 1087 QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCA 1146
            QMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL        ERAK++ C 
Sbjct: 1068 QMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCR 1127

Query: 1147 LEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNR 1206
            LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+A  +ISPWLLR+EL+R
Sbjct: 1128 LEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVA--RISPWLLRVELDR 1185

Query: 1207 EMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDE---S 1263
            + M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIMN +  K +  +E    
Sbjct: 1186 KHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDK 1245

Query: 1264 AEDDVFLKKIESNMLTEMALR--------------------------------------- 1284
             +DDVFL+ IESNMLT+M L+                                       
Sbjct: 1246 MDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILET 1305

Query: 1285 -GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL  VISFDGSYVNYRHL
Sbjct: 1306 DGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHL 1365

Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
            A+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++AA   ESD ++GV+ENI
Sbjct: 1366 ALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENI 1425

Query: 1404 MLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLEFGMTPARSPVSG---- 1453
            MLGQLAP GTG   L L+ E  K  +E+   +P        G+ FG  P  SP+ G    
Sbjct: 1426 MLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAP--SPMGGISPA 1483

Query: 1454 -TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPS---- 1508
             TP++ G  +P Y        SP   +  +P  G   FSP+++   S  SPGYSP+    
Sbjct: 1484 MTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAASDASGFSPGYSPAWSPT 1535

Query: 1509 --SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
              SPG    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1536 PGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1577



 Score =  177 bits (448), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1820 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1879

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1880 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1930



 Score =  176 bits (445), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1820 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1879

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1880 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1930



 Score =  175 bits (444), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1820 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1879

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1880 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1930



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1820 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1879

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1880 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1930



 Score =  163 bits (413), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1820 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1878

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1879 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1930



 Score =  161 bits (408), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1820 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1879

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1880 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1930



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1820 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1867

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1868 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1912

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1913 GYSPTSPTYS 1922


>gi|324120536|dbj|BAJ78659.1| RNA polymerase II largest subunit [Nomadacris japonica]
          Length = 1659

 Score = 1768 bits (4578), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 899/1639 (54%), Positives = 1148/1639 (70%), Gaps = 102/1639 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A V  V+ VQFGILSPDEIR+MSV +  I + ET E G+PK GGL DPR G +DR  +
Sbjct: 6    SKAPVRYVKRVQFGILSPDEIRRMSVTEGGIRYSETYEGGRPKLGGLMDPRQGVMDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  N  ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L    + K K+ +
Sbjct: 66   CQTCAGNQTECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFYCSKLLVSPTNPKIKEVV 125

Query: 126  KIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQD-----GEEPLKKNKGGCGAQQPKL 178
                  P+ RL  + D CK K  CEGGDE+D+   +      ++P K+  GGCG  QP +
Sbjct: 126  MKSKGQPRKRLTYVYDLCKGKNICEGGDEMDLNKDNPDDPNNQQPRKQGHGGCGRYQPSI 185

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
               G+ + AE+K     N+D +      E+K +L+AERV  +LK I+DE+C +LG++PK+
Sbjct: 186  RRAGLDLTAEWK---HVNEDSQ------EKKISLSAERVWEILKHITDEECFILGMDPKF 236

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARPDWMI  VLP+PP  VRP+          DDLTH+LA II+ N  L R E+ GA AH+
Sbjct: 237  ARPDWMICTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKSNNELMRNEQAGAAAHV 296

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ISE  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFS
Sbjct: 297  ISENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 356

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVITPDP + IDQ+GVP SIA N+T+PE VTP+NI++++ELV  G    PG   AKYI
Sbjct: 357  ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPG---AKYI 413

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            +RD+G+R+DLR+  KSSD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+
Sbjct: 414  VRDNGERIDLRFHPKSSDLHLQCGYKVERHVRDGDLVIFNRQPTLHKMSMMGHRVKVLPW 473

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAE+  L + P+ I++PQ+N+PVMGIVQ
Sbjct: 474  STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENLHITPRQIITPQANKPVMGIVQ 533

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL   RK+TKRD F+EK+  MN+LM+   +DGK+PQP ILKP+PLWTGKQ+F+LIIP  
Sbjct: 534  DTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQLFSLIIPGN 593

Query: 589  INLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
            +N+ RT + H D+ D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E
Sbjct: 594  VNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLE 653

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
            +G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I +
Sbjct: 654  LGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYTEIQKAIKKAKEDVIEVIHK 713

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS I
Sbjct: 714  AHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNI 773

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFH
Sbjct: 774  NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH 833

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+   
Sbjct: 834  AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGE 893

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
             +E Q L ++K+    F+K F+F+   E        ++ + +L    E+    + E ++L
Sbjct: 894  TVEFQNLPTIKLSNKTFEKKFKFDPTNERHLRRIFHEDVLRELMGSSEVISELEKEWEQL 953

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
              DR  L  +I  SG+S   LP NL+R+IWN +K F ++ R P+D+ P+ V+E V+ L +
Sbjct: 954  CRDREAL-RQIFPSGESKVVLPCNLQRMIWNVKKIFHINERAPTDLSPLRVIEGVNDLLK 1012

Query: 1005 RLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
            +  +V GED LS +A +NATL F  L+RS   +K V +E+RL+ EAFEW+IGEIE+RF Q
Sbjct: 1013 KCVIVAGEDHLSKQANENATLLFQCLVRSILCTKSVSEEYRLSTEAFEWLIGEIETRFQQ 1072

Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS 1124
            +  +PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PS
Sbjct: 1073 AQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132

Query: 1125 LSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
            L+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYE
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNIYYE 1192

Query: 1185 MPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            MPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+
Sbjct: 1193 MPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLV 1250

Query: 1245 LRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV--------------- 1286
            LRIRIMN +  K +   E+    EDD+FL+ IE+NML+EM L+G+               
Sbjct: 1251 LRIRIMNSDENKFQEEGETVDKMEDDMFLRCIEANMLSEMTLQGIEAIGKVYMHLPQTDS 1310

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     +++ V+   DVD  RT SN + EI  VLGIEAVR+
Sbjct: 1311 KKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRK 1370

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLE 1441
            D+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ +  K  IE+ +      + 
Sbjct: 1431 DVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDADKCKAGIEIPMSVGAGMMG 1490

Query: 1442 F-------GMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS 1494
                      TP+ SP   TP++ G  +P Y    N   SPV  +  +P  GG  FSP+ 
Sbjct: 1491 GAGMFFGSAATPSMSP-QMTPWNQGT-TPAY----NSGWSPVLGSGMTP--GGPCFSPSG 1542

Query: 1495 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1554
            +   S  SPG+SP SP     S      SP Y P     SP SPTY+PSSP Y+PTSP+ 
Sbjct: 1543 ASDASGMSPGFSPWSPTPGSPSSPGPAMSP-YLP-----SPASPTYAPSSPAYAPTSPSL 1596

Query: 1555 SPTSPSYSPTSPSYSPTSP 1573
            +P+SP YSPTSPSYSPTSP
Sbjct: 1597 TPSSPHYSPTSPSYSPTSP 1615



 Score = 83.6 bits (205), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/121 (47%), Positives = 74/121 (61%), Gaps = 7/121 (5%)

Query: 1534 SPTSPTYSPS-SPGYSPTSPAYSPTSPSYSPTSPS-YSPTSPSYSPTSPS-YSPTSPSYS 1590
            S  +P+ SP  +P    T+PAY+     +SP   S  +P  P +SP+  S  S  SP +S
Sbjct: 1498 SAATPSMSPQMTPWNQGTTPAYNS---GWSPVLGSGMTPGGPCFSPSGASDASGMSPGFS 1554

Query: 1591 PTSPSYSPTSPSYSPTSPAY-SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
            P SP+    S      SP   SP SP Y+P+SPAY+PTSPS +P+SP YSPTSPSYSPTS
Sbjct: 1555 PWSPTPGSPSSPGPAMSPYLPSPASPTYAPSSPAYAPTSPSLTPSSPHYSPTSPSYSPTS 1614

Query: 1650 P 1650
            P
Sbjct: 1615 P 1615



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 74/121 (61%), Gaps = 7/121 (5%)

Query: 1548 SPTSPAYSP-TSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPS-YSPTSPSYS 1604
            S  +P+ SP  +P    T+P+Y+     +SP   S  +P  P +SP+  S  S  SP +S
Sbjct: 1498 SAATPSMSPQMTPWNQGTTPAYNS---GWSPVLGSGMTPGGPCFSPSGASDASGMSPGFS 1554

Query: 1605 PTSPAYSPTSPAYSPTSPAY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
            P SP     S      SP   SP SP+Y+P+SP+Y+PTSPS +P+SP YSPTSPSYSPTS
Sbjct: 1555 PWSPTPGSPSSPGPAMSPYLPSPASPTYAPSSPAYAPTSPSLTPSSPHYSPTSPSYSPTS 1614

Query: 1664 P 1664
            P
Sbjct: 1615 P 1615



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 62/118 (52%), Gaps = 36/118 (30%)

Query: 1590 SPTSPSYSP-TSPSYSPTSPAY------------SPTSPAYSPTSPA-YSPTSPSY---- 1631
            S  +PS SP  +P    T+PAY            +P  P +SP+  +  S  SP +    
Sbjct: 1498 SAATPSMSPQMTPWNQGTTPAYNSGWSPVLGSGMTPGGPCFSPSGASDASGMSPGFSPWS 1557

Query: 1632 ------------------SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
                              SP SP+Y+P+SP+Y+PTSPS +P+SP YSPTSP+YSPTSP
Sbjct: 1558 PTPGSPSSPGPAMSPYLPSPASPTYAPSSPAYAPTSPSLTPSSPHYSPTSPSYSPTSP 1615



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 78/153 (50%), Gaps = 38/153 (24%)

Query: 1597 SPTSPSYSP-TSPAYSPTSPAYSPTSPAYSPTSPS-YSPTSPSYSPTSPS-YSPTSPSYS 1653
            S  +PS SP  +P    T+PAY+     +SP   S  +P  P +SP+  S  S  SP +S
Sbjct: 1498 SAATPSMSPQMTPWNQGTTPAYNS---GWSPVLGSGMTPGGPCFSPSGASDASGMSPGFS 1554

Query: 1654 PTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
            P SP+    S      SP Y P     SP SPTY+P+SP             AY+P+SP 
Sbjct: 1555 PWSPTPGSPSSPGPAMSP-YLP-----SPASPTYAPSSP-------------AYAPTSPS 1595

Query: 1714 LSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
            L+P+SP+             YSPTSPSYSP+SP
Sbjct: 1596 LTPSSPH-------------YSPTSPSYSPTSP 1615



 Score = 64.3 bits (155), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 26/136 (19%)

Query: 1646 SPTSPSYSP-TSPSYSPTSPAYSPTSPGYSPTSPS-YSPTSPTYSPTSPSYNPQSAKYSP 1703
            S  +PS SP  +P    T+PAY+    G+SP   S  +P  P +SP+  S    ++  SP
Sbjct: 1498 SAATPSMSPQMTPWNQGTTPAYNS---GWSPVLGSGMTPGGPCFSPSGAS---DASGMSP 1551

Query: 1704 SLAYSPSSPRLS-----PASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGG 1758
              +    +P          SPY P     SP S +Y+P+SP+Y+P+SP+ +PSSP+    
Sbjct: 1552 GFSPWSPTPGSPSSPGPAMSPYLP-----SPASPTYAPSSPAYAPTSPSLTPSSPH---- 1602

Query: 1759 GNPDYSPSSPQYSPSA 1774
                YSP+SP YSP++
Sbjct: 1603 ----YSPTSPSYSPTS 1614



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 67/126 (53%), Gaps = 17/126 (13%)

Query: 1674 SPTSPSYSP-TSPTYSPTSPSYNPQSAKYSPSLA--YSPSSPRLSP--ASPYSPTSPNYS 1728
            S  +PS SP  +P    T+P+YN   + +SP L    +P  P  SP  AS  S  SP +S
Sbjct: 1498 SAATPSMSPQMTPWNQGTTPAYN---SGWSPVLGSGMTPGGPCFSPSGASDASGMSPGFS 1554

Query: 1729 PTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSS 1787
            P S +    S      SP Y PS        +P Y+PSSP Y+P++   +PS+P YSP+S
Sbjct: 1555 PWSPTPGSPSSPGPAMSP-YLPSP------ASPTYAPSSPAYAPTSPSLTPSSPHYSPTS 1607

Query: 1788 TSQYTP 1793
             S Y+P
Sbjct: 1608 PS-YSP 1612


>gi|324120544|dbj|BAJ78663.1| RNA polymerase II largest subunit [Euborellia plebeja]
          Length = 1812

 Score = 1767 bits (4577), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 896/1639 (54%), Positives = 1151/1639 (70%), Gaps = 110/1639 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDE+R+MSV +  I++ ET E G+PK GGL DPR G +DR  +
Sbjct: 6    SKAPLRTVKRVQFGILSPDEVRRMSVTEGGIKYSETYEGGRPKLGGLMDPRQGVMDRSTR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA- 124
            C+TC  N  ECPGHFGH++LAKP+FHIG++   + I+R VCF CSK+L    + K K+  
Sbjct: 66   CQTCAGNQVECPGHFGHIDLAKPVFHIGYLVKAIKILRCVCFYCSKLLVSPTNPKIKEVV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK----GGCGAQQPKLT 179
            +K +  P+ RL  + D CK K  CEGGDE+D+P +  ++P  + K    GGCG  QP + 
Sbjct: 126  MKTKGQPRKRLVYVYDLCKGKNICEGGDEMDIPKEGQDDPNGQGKKVGHGGCGRYQPNIR 185

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
              G+ + AE+K     N+D +      E+K  LTA+RV  + K I+DE+C +LG++PK+A
Sbjct: 186  RSGLDLTAEWK---HVNEDSQ------EKKIVLTAQRVWEIFKHITDEECFILGMDPKFA 236

Query: 240  RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RPDWMIL VLP+PP  VRP+          DDLTH+LA II+ N  L   E+ GA AH++
Sbjct: 237  RPDWMILTVLPVPPLAVRPAVVMYGSARNQDDLTHKLADIIKANNELVHNEQAGAAAHVL 296

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            +E  +LLQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSA
Sbjct: 297  AENIKLLQFHVATLIDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 356

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVITPDP + IDQ+GVP SIA N+T+PE VTP+N+E+++ELV+ G    PG   AKYI+
Sbjct: 357  RTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNLEKMQELVQRGNSQYPG---AKYIV 413

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD+G R+DLRY  K+SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+S
Sbjct: 414  RDNGDRIDLRYHPKTSDLHLQCGYKVERHVGDGDLVIFNRQPTLHKMSMMGHRVKVLPWS 473

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQD
Sbjct: 474  TFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQD 533

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK+TKRD F+EK+  MN+LM+   +DGK+PQP ILKP+PLWTGKQ+F+LIIP  +
Sbjct: 534  TLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQLFSLIIPGNV 593

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            NL RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+
Sbjct: 594  NLIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICYLEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A
Sbjct: 654  GHELCGQFYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS IN
Sbjct: 714  HNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHA
Sbjct: 774  ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+    
Sbjct: 834  MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDSTVRNSVGQLIQLRYGEDGLCGEI 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E Q L ++K+    F+K FRF+   E        ++ + +L    E+    + E ++L 
Sbjct: 894  VEFQNLPTIKLSNKAFEKKFRFDPTNERQLRRIFNEDVVRELMGSGEVISELEREWEQLS 953

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L  +I  SG+S   LP NL+R+IWN QK F ++ R P+D+ P++V++ V  +  +
Sbjct: 954  KDREAL-RQIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLKVIKGVSDMLRK 1012

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
              +V GED LS +A +NATL F  L+RST  ++ V +E RL+ EAFEW+IGEIE+RF Q+
Sbjct: 1013 CVIVAGEDHLSKQANENATLLFQCLVRSTLCTRLVSEEFRLSSEAFEWLIGEIETRFRQA 1072

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
              +PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL
Sbjct: 1073 QCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSL 1132

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEM
Sbjct: 1133 TVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIHEDQEFVNVYYEM 1192

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PD D  P++ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+L
Sbjct: 1193 PDFD--PQRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVL 1250

Query: 1246 RIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV---------------- 1286
            RIRIMN +  K +  +E+    EDD+FL+ IE+NML++M L+G+                
Sbjct: 1251 RIRIMNSDDNKLQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1310

Query: 1287 ------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                    +++ V+   DVD  RT SN + EI  VLGIEAVR++
Sbjct: 1311 KRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKS 1370

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            +  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD
Sbjct: 1371 VEKEMNSVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1430

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLP--SYMEGL 1440
            +L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  +E+ +P    M GL
Sbjct: 1431 VLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDSEKCKAGMEIPMPHAHMMGGL 1490

Query: 1441 EFGM------TPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS 1494
              GM      TP+ SP + TP+  G  +PGY  S     SP          GG +FSP+ 
Sbjct: 1491 GVGMFFGSATTPSMSP-NNTPWSQG-ATPGYPHS----WSPGNALGTGMTPGGPSFSPSG 1544

Query: 1495 SPGYSPSSPGYS-------------PSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYS 1541
            +   S  SPGYS             PS   Y P+  G    SPGYSPTSP ++PTSP+ +
Sbjct: 1545 ASDASGMSPGYSGWSPQPGSPSSPGPSMSPYIPSPMG---ASPGYSPTSPAFAPTSPSLT 1601

Query: 1542 PSSPGYSPTSPAYSPTSPS 1560
            P+SP YSPTSP+YSPTSP+
Sbjct: 1602 PTSPNYSPTSPSYSPTSPN 1620


>gi|332023552|gb|EGI63788.1| DNA-directed RNA polymerase II subunit RPB1 [Acromyrmex echinatior]
          Length = 1906

 Score = 1767 bits (4577), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 900/1638 (54%), Positives = 1140/1638 (69%), Gaps = 108/1638 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV    I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKASLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L +  + K K+  
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVNPHNPKIKEIV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP----LKKNKGGCGAQQPKLT 179
            +K +  P+ RL  + D CK+K  CEGGDE+D+  ++ E       K   GGCG  QP L 
Sbjct: 126  MKTKGQPRKRLAFVYDLCKSKNICEGGDEMDINKENAENQPQMDRKPGHGGCGRYQPNLR 185

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
              G+ + AE+K     N+D +      E+K  L+AER   +LK I DE+  +LG++PK+A
Sbjct: 186  RSGLDVTAEWK---HVNEDSQ------EKKIILSAERAWEILKHIKDEESFILGMDPKFA 236

Query: 240  RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RPDWMI+ VLP+PP  VRP+          DDLTH+LA II+ N  L R E++GA AH+I
Sbjct: 237  RPDWMIVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELVRNEQSGAAAHVI 296

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            SE  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSA
Sbjct: 297  SENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 356

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ LV  G    PG   AKYI+
Sbjct: 357  RTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPG---AKYIV 413

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD+G+R+DLR+  KSSD HL+ GY+VERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+S
Sbjct: 414  RDNGERIDLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWS 473

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQD
Sbjct: 474  TFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQD 533

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK+TKRD FIEK+  MN+LM+   +DGK+PQP ILKP+PLWTGKQ+F+LIIP  +
Sbjct: 534  TLTAVRKMTKRDVFIEKEQMMNLLMFLPSWDGKMPQPCILKPKPLWTGKQLFSLIIPGNV 593

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            N+ RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E+
Sbjct: 594  NMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A
Sbjct: 654  GHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS IN
Sbjct: 714  HNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHA
Sbjct: 774  ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    
Sbjct: 834  MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGET 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E Q L ++K+    F+K F+F+   E +      ++ + ++    E+    + E ++L 
Sbjct: 894  VEFQNLPTIKVSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLN 953

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L  EI  SG+S   LP NL+R+IWN QK F ++ R P+D+ PM V++ V  L E+
Sbjct: 954  RDRAVL-REIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKNLLEK 1012

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
              +V G+D LS +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+
Sbjct: 1013 CIIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQA 1072

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
             V+PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL
Sbjct: 1073 QVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSL 1132

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +VFL        E+AKNV C LE+TTL+ VT  T ++YDPDP  T+I ED EFV  YYEM
Sbjct: 1133 TVFLTGAAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEM 1192

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PD D  P KISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+L
Sbjct: 1193 PDFD--PMKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVL 1250

Query: 1246 RIRIMNDEAPKGELNDESA----EDDVFLKKIESNMLTEMALRGV--------------- 1286
            RIRIMN +  K +  DE      EDD+FL+ IE+NML++M L+G+               
Sbjct: 1251 RIRIMNSDDNKFQDTDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1310

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     +L+ V+   DVD  RT SN + EI +VLGIEAVR+
Sbjct: 1311 KKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1370

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1371 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM---- 1437
            D+LLDAA  AE D +RGV+ENI++GQL  IGTG   L L+ E  K+ IE+ +        
Sbjct: 1431 DVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKSGIEIPMAVGAGMMG 1490

Query: 1438 -EGLEFGMTPARSPVS--GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS 1494
              G+ FG     S +S   TP+     +PGY  S    +SP   +  +P  GG  FSP+ 
Sbjct: 1491 TAGMFFGSVTGMSSMSPQMTPWMGA--TPGYGAS---NMSPALSSGMTP--GGACFSPSG 1543

Query: 1495 SPGYSPSSPGYSPSSPGYS------------PTSPGYSPTSPGYSPTSPGYSPTSPTYSP 1542
            +   S  SP YS  SP               P SP     SP YSPTSP Y PTSP+ +P
Sbjct: 1544 ASDASGLSPAYSAYSPQPGSPGSPGPSMSPFPMSPA-GAASPSYSPTSPAYLPTSPSMTP 1602

Query: 1543 SSPGYSPTSPAYSPTSPS 1560
            SSP YSPTSP YSPTSP+
Sbjct: 1603 SSPNYSPTSPTYSPTSPN 1620


>gi|324120572|dbj|BAJ78677.1| RNA polymerase II largest subunit [Vespa analis insularis]
          Length = 1708

 Score = 1767 bits (4576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 902/1637 (55%), Positives = 1140/1637 (69%), Gaps = 108/1637 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV    I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L    + K K+  
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPKIKEIV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP---LKKNKGGCGAQQPKLTI 180
            +K +  P+ RL  + D CK+K  CEGGDE+D+  ++ E+     K   GGCG  QP L  
Sbjct: 126  MKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENSEQQPTDRKPGHGGCGRYQPNLRR 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ + AE+K     N+D +      E+K  LTAER   +LK I+DE+  +LG++PK+AR
Sbjct: 186  SGLDVTAEWK---HVNEDSQ------EKKIVLTAERAWEILKHITDEESFILGMDPKFAR 236

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWM++ VLP+PP  VRP+          DDLTH+LA II+ N  L R E+ GA AH+IS
Sbjct: 237  PDWMVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELLRNEQAGAAAHVIS 296

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 297  ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ELV  G    PG   AKYI+R
Sbjct: 357  TVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPG---AKYIVR 413

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  K SD HL+ GY+VERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 414  DNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWST 473

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 474  FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDT 533

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD FIEK+  MNILM+   +DGK+PQP ILKP+PLWTGKQ+F+LIIP  +N
Sbjct: 534  LTAVRKMTKRDVFIEKEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVN 593

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E+G
Sbjct: 594  MIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELG 653

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A 
Sbjct: 654  HEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 713

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 714  NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 773

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETV 893

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E Q L ++K+    F+K F+F+   E +      ++ + ++    E+    + E ++L  
Sbjct: 894  EFQNLPTIKLSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNR 953

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L  EI  SG+S   LP NL+R+IWN QK F ++ R P+D+ PM V++ V  L E+ 
Sbjct: 954  DRAVL-REIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLEKC 1012

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +V G+D LS +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+ 
Sbjct: 1013 IIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQ 1072

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
            V+PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+
Sbjct: 1073 VSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 1132

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMP
Sbjct: 1133 VFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMP 1192

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D  P KISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LR
Sbjct: 1193 DFD--PTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLR 1250

Query: 1247 IRIMNDEAPKGELNDESA----EDDVFLKKIESNMLTEMALRGV---------------- 1286
            IRIMN +  K +  +E      EDD+FL+ IE+NML++M L+G+                
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1310

Query: 1287 ------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                    +L+ V+   DVD  RT SN + EI +VLGIEAVR++
Sbjct: 1311 KRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1370

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            +  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD
Sbjct: 1371 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1430

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM----- 1437
            +LLDAA  AE D +RGV+ENI++GQL  IGTG   L L+ E  K  IE+ +         
Sbjct: 1431 VLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGT 1490

Query: 1438 EGLEFG--MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSS 1495
             G+ FG   TP+ SP   TP+     +PGY  S    +SP   +  +P  GG  FSP+ +
Sbjct: 1491 AGMFFGSVATPSMSP-QMTPWMGA--TPGYGASS---MSPALGSGMTP--GGACFSPSGA 1542

Query: 1496 PGYSPSSPGYSP------------SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPS 1543
               S  SP YS              S    P SP     SP YSPTSP Y PTSP+ +PS
Sbjct: 1543 SDASGLSPAYSAYSPQPGSPGSPGPSMSPYPMSPA-GGASPSYSPTSPAYLPTSPSMTPS 1601

Query: 1544 SPGYSPTSPAYSPTSPS 1560
            SP YSPTSP YSPTSP+
Sbjct: 1602 SPNYSPTSPTYSPTSPN 1618



 Score = 80.5 bits (197), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/123 (45%), Positives = 69/123 (56%), Gaps = 15/123 (12%)

Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPAYSPT 1613
            S  +PS SP    +   +P Y  +S S +  S   +P    +SP+  S  S  SPAYS  
Sbjct: 1497 SVATPSMSPQMTPWMGATPGYGASSMSPALGS-GMTPGGACFSPSGASDASGLSPAYSAY 1555

Query: 1614 SPAYS------------PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
            SP               P SPA    SPSYSPTSP+Y PTSPS +P+SP+YSPTSP+YSP
Sbjct: 1556 SPQPGSPGSPGPSMSPYPMSPA-GGASPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSP 1614

Query: 1662 TSP 1664
            TSP
Sbjct: 1615 TSP 1617



 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/123 (43%), Positives = 66/123 (53%), Gaps = 27/123 (21%)

Query: 1597 SPTSPSYSPTSPAYSPTSPAY--SPTSPAY----SPTSPSYSPTSPS-YSPTSPSYS--- 1646
            S  +PS SP    +   +P Y  S  SPA     +P    +SP+  S  S  SP+YS   
Sbjct: 1497 SVATPSMSPQMTPWMGATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSPAYSAYS 1556

Query: 1647 ----------------PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
                            P SP+    SPSYSPTSPAY PTSP  +P+SP+YSPTSPTYSPT
Sbjct: 1557 PQPGSPGSPGPSMSPYPMSPA-GGASPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYSPT 1615

Query: 1691 SPS 1693
            SP+
Sbjct: 1616 SPN 1618



 Score = 40.8 bits (94), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 23/103 (22%)

Query: 1708 SPSSPRLSP-ASPYSPTSPNYSPTSSSYSPTSPS-YSPSSPTYSPSSPYNAGGGNPDYS- 1764
            S ++P +SP  +P+   +P Y   +SS SP   S  +P    +SPS   +A G +P YS 
Sbjct: 1497 SVATPSMSPQMTPWMGATPGYG--ASSMSPALGSGMTPGGACFSPSGASDASGLSPAYSA 1554

Query: 1765 ------------------PSSPQYSPSAGYSPSAPGYSPSSTS 1789
                              P SP    S  YSP++P Y P+S S
Sbjct: 1555 YSPQPGSPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPS 1597


>gi|324120592|dbj|BAJ78687.1| RNA polymerase II largest subunit [Ctenocephalides felis]
          Length = 1749

 Score = 1767 bits (4576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 956/1765 (54%), Positives = 1218/1765 (69%), Gaps = 144/1765 (8%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGIL+PDEIR+MSV +  I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRTVKKVQFGILAPDEIRRMSVTEGGIRFSETMEGGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   L I+R VCF CSK+L    + K K+ +
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHIGFVTKTLKILRCVCFYCSKMLVSPQNPKIKEVV 125

Query: 126  KIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQDG-EEPLKK-NKGGCGAQQPKLTIE 181
                  P+ RL  + D CK K  CEGG+++D+  +    +P KK   GGCG  QP L   
Sbjct: 126  SKSKGQPRKRLAYVYDLCKGKKICEGGEDMDLTKEGAPADPNKKAGHGGCGHYQPSLRRT 185

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ + AE+K     ND+ +      E+K  ++AERV  +LK I+DE+C +LG++PK+ARP
Sbjct: 186  GLDITAEWK---HVNDESQ------EKKIFVSAERVWEILKHITDEECFVLGMDPKFARP 236

Query: 242  DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            DWMI+ V+P+PP  VRP+          DDLTH+L+ II+ N  L R E +GA AH+I+E
Sbjct: 237  DWMIITVMPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELMRNEASGAAAHVITE 296

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              ++LQFH+AT+ DN++PG PRA Q+SG+P+K++ +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 297  NIKMLQFHVATFVDNDMPGMPRAMQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDFSART 356

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VITPDP + IDQ+GVP SIA N+T+PE VTP+NIER++ELV  G    PG   AKYI+RD
Sbjct: 357  VITPDPNLRIDQVGVPRSIAQNMTFPELVTPFNIERMQELVRRGNSQYPG---AKYIVRD 413

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G+R+DLR+  K SD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 414  NGERIDLRFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 473

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 474  RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTL 533

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
               RK+TKRD FIEK+  MNILM+   +DGK+PQP ILKP+PLWTGKQ+F LIIP  +N+
Sbjct: 534  TAVRKMTKRDVFIEKEQMMNILMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVNM 593

Query: 592  FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             RT + H D  D G    ++ GDT V +E G+L+ G LCK+TLG S GSL+H+++ E+G 
Sbjct: 594  IRTHSTHPDEEDDGPYKWISPGDTKVMVEHGQLIMGILCKRTLGASAGSLLHIVFLELGH 653

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            + A +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A +
Sbjct: 654  ETAGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYMEIQRAIKKAKEDVIEVIQKAHN 713

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 714  MELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 773

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 774  QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 833

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E
Sbjct: 834  GREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEAVE 893

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
             Q L ++K+    F+K F+FE+  E +      ++ + +L     +    ++E ++L  D
Sbjct: 894  FQNLPTIKLSNKVFEKKFKFELSNERYLRKIFNEDVVKELTESGYVISELESEWEQLNRD 953

Query: 948  RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1007
            R  L + I ++G+S   LP NL+R+IWN QK F ++ R P+D+ P++V++ V  L  +  
Sbjct: 954  REALRS-IFSNGESKVVLPCNLQRMIWNVQKIFHINKRMPTDLSPIKVIQGVKDLLTKCV 1012

Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            +V G D LS +A +NATL F  L+RST  +K V +E RL+ +AF  +IGEIE+RF Q+  
Sbjct: 1013 IVAGNDRLSKQANENATLLFQCLIRSTLCTKYVSEEFRLSTDAFNLLIGEIETRFQQAQC 1072

Query: 1068 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1127
             PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+V
Sbjct: 1073 NPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 1132

Query: 1128 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1187
            FL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD
Sbjct: 1133 FLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVNIYYEMPD 1192

Query: 1188 EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1247
             D  P KISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LRI
Sbjct: 1193 FD--PTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRI 1250

Query: 1248 RIMNDEAPK---GELNDESAEDDVFLKKIESNMLTEMALRGV------------------ 1286
            RIMN +  K    E N +  EDD+FL+ IE+NML++M L+G+                  
Sbjct: 1251 RIMNSDDNKFQDEEENVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKR 1310

Query: 1287 ----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                                  +++ V+   DVD  RT SN + EI  VLGIEAVR+++ 
Sbjct: 1311 IIITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVE 1370

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
             E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L
Sbjct: 1371 KEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1430

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQ--LPSYMEGLEF 1442
            +DAA  AE D +RGV+ENI++GQL  +GTG   L L+ +  K+ I++   L   +  + F
Sbjct: 1431 MDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDADKCKDGIDIANTLGGVVGDIGF 1490

Query: 1443 ---GMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYS 1499
                 TP+ SP   TP+  G  +P +  S     SP   +  +P  GG +FSP+ +   S
Sbjct: 1491 FGIATTPSASP-RMTPWSQG-ATPAHGASA---WSPNQYSMMTP--GGPSFSPSGASDAS 1543

Query: 1500 PSSPGYS-------------------------PSSPGYSPTSPGYSPTSPGYSPTSPGYS 1534
              SPG+                          P+SP Y+PTSP  +PTSP YSP SP YS
Sbjct: 1544 GLSPGWQPGSPSSPGPSMSPYFASPSASPPYSPNSPAYAPTSPNMTPTSPMYSPASPSYS 1603

Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
            PTSP YSP+SP YSPTSP YS TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP YSPTSP
Sbjct: 1604 PTSPNYSPTSPNYSPTSPNYSHTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSP 1663

Query: 1595 SYSPTSP-----------------------------SYSPTSPAYSPTSPAYSPTSPAYS 1625
            +YSP S                                  +      +  AYSPTSP YS
Sbjct: 1664 NYSPASASYSPTSPSYSPTSPSYSPTSPSYPSASPSYSPTSPTYSPTSPAAYSPTSPNYS 1723

Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSP 1650
             +SP+Y+P SP+YSPT+PSYSP+SP
Sbjct: 1724 SSSPNYTPASPNYSPTNPSYSPSSP 1748



 Score = 94.7 bits (234), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 127/253 (50%), Positives = 153/253 (60%), Gaps = 40/253 (15%)

Query: 1537 SPTYSPSSPGYSPT--SPAYSPTSPS-YSPTSPSYSPTSPS-YSPTSPS----------- 1581
            SP  +P S G +P   + A+SP   S  +P  PS+SP+  S  S  SP            
Sbjct: 1500 SPRMTPWSQGATPAHGASAWSPNQYSMMTPGGPSFSPSGASDASGLSPGWQPGSPSSPGP 1559

Query: 1582 ---------------------YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1620
                                 Y+PTSP+ +PTSP YSP SPSYSPTSP YSPTSP YSPT
Sbjct: 1560 SMSPYFASPSASPPYSPNSPAYAPTSPNMTPTSPMYSPASPSYSPTSPNYSPTSPNYSPT 1619

Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1680
            SP YS TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP YSPTSP YSP     S +    
Sbjct: 1620 SPNYSHTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPNYSPA----SASYSPT 1675

Query: 1681 SPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPS 1740
            SP+    SP+    +P     SPS + +  +   +  + YSPTSPNYS +S +Y+P SP+
Sbjct: 1676 SPSYSPTSPSYSPTSPSYPSASPSYSPTSPTYSPTSPAAYSPTSPNYSSSSPNYTPASPN 1735

Query: 1741 YSPSSPTYSPSSP 1753
            YSP++P+YSPSSP
Sbjct: 1736 YSPTNPSYSPSSP 1748



 Score = 70.9 bits (172), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 73/196 (37%), Positives = 91/196 (46%), Gaps = 70/196 (35%)

Query: 1599 TSPSYSP-TSPAYSPTSPAYSPTSPAYSPTSPSY-SPTSPSYSPTSPS-YSPTSPSYSPT 1655
            T+PS SP  +P     +PA+  +  A+SP   S  +P  PS+SP+  S  S  SP + P 
Sbjct: 1495 TTPSASPRMTPWSQGATPAHGAS--AWSPNQYSMMTPGGPSFSPSGASDASGLSPGWQPG 1552

Query: 1656 SPSYSPTSPA------------------YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
            SPS    S +                  Y+PTSP  +PTSP YSP SP+YSPTSP+    
Sbjct: 1553 SPSSPGPSMSPYFASPSASPPYSPNSPAYAPTSPNMTPTSPMYSPASPSYSPTSPN---- 1608

Query: 1698 SAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSS------------------------ 1733
                     YSP+SP       YSPTSPNYS TS S                        
Sbjct: 1609 ---------YSPTSPN------YSPTSPNYSHTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1653

Query: 1734 ----YSPTSPSYSPSS 1745
                YSPTSP+YSP+S
Sbjct: 1654 TSPVYSPTSPNYSPAS 1669


>gi|427777531|gb|JAA54217.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
          Length = 1941

 Score = 1766 bits (4575), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 904/1644 (54%), Positives = 1155/1644 (70%), Gaps = 136/1644 (8%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  I++ E  E G+PK GGL DPR G IDR  +
Sbjct: 9    SKAPLREVKRVQFGILSPDEIRRMSVTEGGIKYPEIYEGGRPKLGGLMDPRQGVIDRTSR 68

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP+FH GF+   + I+R VCF CSK+L + ++ K K+ +
Sbjct: 69   CQTCAGNMTECPGHFGHIDLAKPVFHCGFLTKTIKILRCVCFYCSKLLVNPNNPKIKEIV 128

Query: 126  -KIR-NPKNRLKKILDACKNKTKCEGGDEIDVP-GQDGEEPLKKNK----GGCGAQQPKL 178
             K +  P+ RL  + D CK K  CEGGDEID   G D +     NK    GGCG  QP +
Sbjct: 129  GKTKGQPRKRLAHVYDLCKGKNICEGGDEIDTKLGPDSQVQEDTNKKQGHGGCGRYQPSI 188

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
               G+ + AE+K     N+D +      E+K  LTAERV  +LK +S+E+C +LG++P+Y
Sbjct: 189  RRSGLDLTAEWK---HINEDSQ------EKKIALTAERVWEILKHVSEEECMILGMDPRY 239

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            A+PDWM++ VLP+PP  VRP+          DDLTH+LA I++ N  L R E +GA AHI
Sbjct: 240  AKPDWMLVTVLPVPPLAVRPAVVMFGSARNQDDLTHKLADIVKANNELLRNEASGAAAHI 299

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            I+E  ++LQFH+AT  DNE+PG PRA Q+SGRP+KSI  RLK+KEGRIRGNLMGKRVDFS
Sbjct: 300  IAENIKMLQFHVATLVDNEMPGLPRAMQKSGRPLKSIKQRLKSKEGRIRGNLMGKRVDFS 359

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVITPDP + I+++GVP SIA NLT+PE VTP+NI+++ +LV  G +  PG   AKYI
Sbjct: 360  ARTVITPDPNLRINEVGVPRSIAQNLTFPEIVTPFNIDKMHDLVRRGNNQYPG---AKYI 416

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IRD+G+R+DLR+  K+SD HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGH+IK++P+
Sbjct: 417  IRDNGERIDLRFHPKASDLHLQCGYRVERHVRDGDIIVFNRQPTLHKMSMMGHKIKVLPW 476

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFR+NLSVT+PYNADFDGDEMN+HVPQS ETRAEV +L MVP+ I++PQSN+PVMGIVQ
Sbjct: 477  STFRMNLSVTTPYNADFDGDEMNLHVPQSLETRAEVEQLAMVPRQIITPQSNKPVMGIVQ 536

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL   RK+TKRD F+EKD  M ILM+   +DGK+P P +LKP+PLWTGKQ+F+LIIP  
Sbjct: 537  DTLTAVRKMTKRDIFLEKDQMMTILMFLPIWDGKMPMPAVLKPKPLWTGKQIFSLIIPGN 596

Query: 589  INLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
            +NL RT + H D  D G    ++ GDT V IE GEL+SG +CKKT+G S+GSL+HV++ E
Sbjct: 597  VNLIRTHSTHPDEEDDGPYKWISPGDTKVLIEHGELISGIVCKKTVGASSGSLMHVVFAE 656

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
            +G + A  F GH Q +VN WLL    +IGIGDTIAD +T   I +TI KAK++V ++I++
Sbjct: 657  LGHEVAGAFYGHIQTVVNAWLLLEGHTIGIGDTIADKQTFIDIKNTIEKAKHDVIDVIEK 716

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            A +  LEP PG T+ ++FEN+VN++LN ARD+ G+SAQKSLSE NN KAMV +G+KGS I
Sbjct: 717  AHNDELEPSPGNTLRQTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMVVSGAKGSKI 776

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFH
Sbjct: 777  NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH 836

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AMGGREGLIDTAVKT+ETGYIQRRL+KAME +M+ YDGTVRNS G VIQ  YGEDG+D  
Sbjct: 837  AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIAYDGTVRNSNGQVIQLRYGEDGLDGG 896

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
             +E Q++ +LK     F+K FRF+   E +      ++ + +L          + E ++L
Sbjct: 897  TVEFQSMPTLKPSNKSFEKKFRFDACNERYLRKVFTEDVVRELMGSATAVSELEKEWERL 956

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
            + DR  L T I  +GDS   LP NL+R++WNAQK F+V+ R P+D+ P+ VV+ V++L +
Sbjct: 957  KKDREILRT-IFPTGDSKVVLPCNLQRMLWNAQKIFRVNLRSPTDLSPLRVVQGVEELVK 1015

Query: 1005 RLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
            +L +VPGED LS++A +NAT  F  LLR+T  SKRV +E RL+ E+FEW++GEIE+RF Q
Sbjct: 1016 KLVIVPGEDHLSIQANENATFLFRALLRATLCSKRVAEEFRLSTESFEWLLGEIETRFHQ 1075

Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS 1124
            S   PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN++KK KTPS
Sbjct: 1076 SQGQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPS 1135

Query: 1125 LSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
            L+VFL        E+AK+V C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYE
Sbjct: 1136 LTVFLTGAAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYE 1195

Query: 1185 MPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            MPD D  P +ISPWLLR+EL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+
Sbjct: 1196 MPDFD--PTRISPWLLRVELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLV 1253

Query: 1245 LRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV--------------- 1286
            LRIRIMN +  K +  +E     EDDVFL+ IE+NML++M L+G+               
Sbjct: 1254 LRIRIMNSDDGKFQDEEEQVDKMEDDVFLRCIEANMLSDMTLQGIEAITKVYMHLPTTDN 1313

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     +L+ V+   DVD  RT SN + EI  VLGIEAVR+
Sbjct: 1314 KKRIVLTETGEFKAIAEWLLETDGTSLMRVLSERDVDPVRTYSNDICEIFAVLGIEAVRK 1373

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            A+  E+  VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1374 AVEKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1433

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLE 1441
            D+LLDAA  AE DYL+GV+ENI++GQLA +GTG   L L+ E  K  IE+          
Sbjct: 1434 DVLLDAASHAEVDYLKGVSENIIMGQLARMGTGAFDLMLDAEKCKYGIEI---------- 1483

Query: 1442 FGMTPARSPVSGTPYHDGMMSPGYLF----SPNLRLSPVTDAQFSPYVGGMAFSPTSSPG 1497
                P   P+ G+     +  PG  F    +P   +SP    Q +P+  G   +P    G
Sbjct: 1484 ----PMSLPMMGS-----LCGPGVFFGSAATPMAGMSP----QMTPWATGA--TPAYGSG 1528

Query: 1498 YSPS-SPGYSPSSPGYSPTSPGYSPTSPGYSP--TSPGYSPTSPTYSPSSPG-------- 1546
            +SP+   G +P   G+SP++   S  + G+SP   SP +SP      P SP         
Sbjct: 1529 WSPNVGSGMTPGGAGFSPSA---SSDASGFSPGACSPAWSP-----QPGSPASSPASPYI 1580

Query: 1547 -------YSPTSPAYSPTSPSYSP 1563
                   YSP+SPAY+P+SPS +P
Sbjct: 1581 PSPSSPNYSPSSPAYAPSSPSLTP 1604



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/143 (69%), Positives = 113/143 (79%), Gaps = 9/143 (6%)

Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
            Y+P+SP YSPTSP YSPTSP+YSP+SP YSPTSP YSPTSP+Y+P+SP YSPTSP YSPT
Sbjct: 1805 YTPSSPKYSPTSPTYSPTSPSYSPSSPKYSPTSPKYSPTSPTYTPSSPKYSPTSPQYSPT 1864

Query: 1663 SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSP 1722
            SP YSPTSP YSPTSP YSPTSPTYSPTSP Y+P S        YSP+SP+    S YSP
Sbjct: 1865 SPQYSPTSPKYSPTSPKYSPTSPTYSPTSPKYSPTSP------TYSPTSPK---GSSYSP 1915

Query: 1723 TSPNYSPTSSSYSPTSPSYSPSS 1745
            TSP YSP+S +YSPTSP+    S
Sbjct: 1916 TSPGYSPSSPTYSPTSPNMEEDS 1938



 Score =  133 bits (335), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 101/140 (72%), Positives = 112/140 (80%), Gaps = 15/140 (10%)

Query: 1617 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
            Y+P+SP YSPTSP+YSPTSPSYSP+SP YSPTSP YSPTSP+Y+P+SP YSPTSP YSPT
Sbjct: 1805 YTPSSPKYSPTSPTYSPTSPSYSPSSPKYSPTSPKYSPTSPTYTPSSPKYSPTSPQYSPT 1864

Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS---SS 1733
            SP YSPTSP YSPTSP Y+P S        YSP+SP+      YSPTSP YSPTS   SS
Sbjct: 1865 SPQYSPTSPKYSPTSPKYSPTSP------TYSPTSPK------YSPTSPTYSPTSPKGSS 1912

Query: 1734 YSPTSPSYSPSSPTYSPSSP 1753
            YSPTSP YSPSSPTYSP+SP
Sbjct: 1913 YSPTSPGYSPSSPTYSPTSP 1932



 Score =  116 bits (290), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/147 (64%), Positives = 110/147 (74%), Gaps = 23/147 (15%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
            Y+P+SP YSPTSP+YSPTSPSYSP+SP YSPTSP YSPTSP Y+P+SP YSPTSP YSPT
Sbjct: 1805 YTPSSPKYSPTSPTYSPTSPSYSPSSPKYSPTSPKYSPTSPTYTPSSPKYSPTSPQYSPT 1864

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---T 1747
            SP Y+P S KYSP+      SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   +
Sbjct: 1865 SPQYSPTSPKYSPT------SPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSS 1912

Query: 1748 YSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
            YSP+S        P YSPSSP YSP++
Sbjct: 1913 YSPTS--------PGYSPSSPTYSPTS 1931



 Score =  105 bits (263), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/130 (50%), Positives = 83/130 (63%), Gaps = 33/130 (25%)

Query: 1680 YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
            YSPTSPTY+P+SP Y             SP+SP+      YSPTSP YSPTS  YSPTSP
Sbjct: 1840 YSPTSPTYTPSSPKY-------------SPTSPQ------YSPTSPQYSPTSPKYSPTSP 1880

Query: 1740 SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS----AGYSPSAPGYSPSSTSQYTPQT 1795
             YSP+SPTYSP+SP         YSP+SP YSP+    + YSP++PGYSPSS + Y+P +
Sbjct: 1881 KYSPTSPTYSPTSP--------KYSPTSPTYSPTSPKGSSYSPTSPGYSPSSPT-YSPTS 1931

Query: 1796 -NRDDSTTKD 1804
             N ++ +  D
Sbjct: 1932 PNMEEDSDND 1941


>gi|428671620|gb|EKX72538.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
            equi]
          Length = 1733

 Score = 1766 bits (4575), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 904/1747 (51%), Positives = 1193/1747 (68%), Gaps = 108/1747 (6%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            +D   P+SP E+ KVRMV+FG+L P+ +++MSV ++   E    G P+ GGL+D R+GT 
Sbjct: 5    LDLNRPFSPCELKKVRMVEFGVLDPELVKRMSVCEVSLSELYRDGVPQTGGLNDLRMGTT 64

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            D +  C TC   +  C GHFGH+ LAKPM+H GF+ TVL I+R VC+NCS++L D+DD +
Sbjct: 65   DPRHVCTTCCMGLQHCNGHFGHIVLAKPMYHYGFLTTVLKILRCVCYNCSRLLCDKDDPR 124

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
             +  +K R   +RL ++ D C +  +C+   + D         LK    GCG  QPK T 
Sbjct: 125  IRNLIKTRATSSRLSRLADVCSSSFRCQNASQSD-------SKLK----GCGYPQPKYTR 173

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EG  ++ ++ +Q+++   +E   E  E K+TL A+    +LK I+ ED + LG  P+ ++
Sbjct: 174  EGPGIMIQF-SQKQRQILEEVEEECDEIKRTLNADEAFKILKGITIEDMRYLGFTPERSQ 232

Query: 241  PDWMILQVLPIPPPPVRP---------SDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            P W+ILQVLP+PPP VRP          DDLT +L  I++ N  ++R ++     HI+ E
Sbjct: 233  PSWLILQVLPVPPPAVRPYVQYGSDRSEDDLTLKLLDIVKTNNLIKRHDKRATAPHIVQE 292

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
             AQLLQFHI T FDN++PG P A+ RS +PIKSI +RLK KEGR+RGNLMGKRVDFSART
Sbjct: 293  MAQLLQFHITTLFDNDIPGMPIASTRSKKPIKSIRARLKGKEGRLRGNLMGKRVDFSART 352

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VIT DP + ID +GVP SIA+ LT+ ETVTP N E L+  VE GPH  PG   AKYIIRD
Sbjct: 353  VITGDPNLPIDTIGVPKSIAMTLTFSETVTPLNFESLRRRVEVGPHDWPG---AKYIIRD 409

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            DG + DLR++KK+S+  LE GYKVERH+ DGD++LFNRQPSLHKMSIMGHR KI+PYSTF
Sbjct: 410  DGTKFDLRHVKKASELQLEYGYKVERHMQDGDYILFNRQPSLHKMSIMGHRAKILPYSTF 469

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            RLNLSVT+PYNADFDGDEMN+H+ Q+ ETRAEV  LM+VPK IVSPQ NRPVMGIVQD+L
Sbjct: 470  RLNLSVTTPYNADFDGDEMNLHLVQTHETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSL 529

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP----- 586
            LG  K TKRD F+ KD  MN+LMW   +DGK+PQP I  P+PLWTGKQV  +++      
Sbjct: 530  LGISKFTKRDCFLTKDELMNLLMWVPYWDGKLPQPCIFHPQPLWTGKQVITVMLTFDQSQ 589

Query: 587  --KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
                INL R A      D    +  D+ V I K E L G +CK+T+G S+GSLIHV+W E
Sbjct: 590  SLTNINLMRDAGISRGKDNPYCSENDSKVIIRKNEHLCGVICKRTVGCSSGSLIHVLWHE 649

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
             GP+  + FL   Q +VN W + N F++   D  A   T+  + + + ++K  V+ L+  
Sbjct: 650  AGPERCKDFLTTVQKVVNAWFVHNGFTVSCSDITASESTLSRVAEVLERSKKEVQRLVGL 709

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            AQ   L+ +PG+++ ESFE +VN+ LN AR+++G+ A +SL E NN+ AMV +GSKGS I
Sbjct: 710  AQRGKLKCQPGKSLFESFEARVNKELNDAREQSGTIAAQSLDERNNILAMVNSGSKGSTI 769

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ ACVGQQNVEGKRIPFGF DR+LPHF K DYGPESRGFV NSYL GLTPQE FFH
Sbjct: 770  NISQIIACVGQQNVEGKRIPFGFRDRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFH 829

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AMGGREG+IDTA KTSETGY+QRRL+KAMEDIMV+YD T RN  GD++QFLYGEDGM + 
Sbjct: 830  AMGGREGIIDTACKTSETGYVQRRLIKAMEDIMVQYDKTARNGGGDILQFLYGEDGMSAE 889

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYI-DDLKTIKELRDVFDAEVQK 943
            +IE Q LD +K+  +E  + +  +   EN+   ++L E I  ++ T    + V   E Q+
Sbjct: 890  YIEDQHLDLMKLDFAELGRLYEHDFRNENYGIGWILDESIRTNILTDFSQQVVLVEEYQR 949

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            L   +  +   +   GD S  LP+N+ RL+  A+  F         ++P+++   V +L 
Sbjct: 950  LLDMKSIVCKVVFPDGDYSQHLPINIARLLEYAKTQFPATIESRKLLNPVDIATRVHRLL 1009

Query: 1004 ERLKVVPG---EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
            E L +V     +D L+ EAQ+NAT+     LR    S+R+++  ++  +A +W++GEIE 
Sbjct: 1010 ENLIIVSTSGPQDILAAEAQENATILIKAHLRLALHSRRLMEHEKIGSDALDWLLGEIER 1069

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
             F +S+  PGE +G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLG+PRL+E+INV + +
Sbjct: 1070 HFYKSIAHPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVRNV 1129

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            KTPSL++ L+ GV   +ERAK++Q  LEYTTL  V  +++V YDP    TI+ +D E+V+
Sbjct: 1130 KTPSLTIHLEEGVAQDQERAKDMQTRLEYTTLDKVVASSQVIYDPKVSNTIVAKDREWVR 1189

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEF-DDDLTCIFNDDN 1239
             YYE PDED    ++ PWLLRI+L+ ++M DK+L+M  + ++I +EF +D++ CI+ DDN
Sbjct: 1190 DYYEFPDED--ENRLGPWLLRIQLSNKIMTDKRLTMKEIGDQIYKEFSNDEIDCIYTDDN 1247

Query: 1240 ADKLILRIRI--MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV----------- 1286
            +++L+LRIRI  MN E  +  + ++  E   FL++  + +L+ + LRG+           
Sbjct: 1248 SEELVLRIRIKYMNVEGEELAVREDEGE---FLQRFMTQLLSNIKLRGIPQISKVYMREE 1304

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     NL  V+    VD  RT SN + EI  V GIEA RR
Sbjct: 1305 AKTKYNETNGRFERVSQWVLDTDGCNLEDVLPIPSVDYVRTISNDVSEIFHVFGIEAARR 1364

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ALL ELR VISFDGSYVNYRHL++LCD MT +GH+M+ITRHG+NR D GP+++CSFEET+
Sbjct: 1365 ALLRELRAVISFDGSYVNYRHLSLLCDVMTQKGHIMSITRHGLNRTDRGPLVKCSFEETL 1424

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNA---IELQLPSYME 1438
            + LLDA++F E D L+G+TEN+++GQL P GTG   + +++  L++A   +++   S M 
Sbjct: 1425 ETLLDASIFGEVDQLKGITENVIMGQLCPYGTGCFDIMIDEAKLRDANQNLQMVPDSAMS 1484

Query: 1439 GLEFGMTPARSPVSGTPYH-DGMMSPGYLFSPN---LRLSPVTDAQFSPYVGGM------ 1488
            G     +     VS +P   + M+SP   FSP+   L +SPV  A  SP  G M      
Sbjct: 1485 GFISPDSSLSPNVSMSPGKINSMLSP-LPFSPSYAALMISPVVAAN-SPSFGSMNIDTSA 1542

Query: 1489 ---AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP 1545
               +FSPT     SP+SPGY+P SP  +P SP YSP     SPTSP YSPTSP YSP+SP
Sbjct: 1543 LGGSFSPTVQTPRSPTSPGYAPLSP--NPLSPAYSPA----SPTSPAYSPTSPAYSPTSP 1596

Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
             YSPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSP
Sbjct: 1597 AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSP 1656

Query: 1606 TSP--AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSP 1661
            TSP   YSPTSPAYSPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP  +YSP
Sbjct: 1657 TSPKIGYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPNITYSP 1716

Query: 1662 TSPAYSP 1668
            T P +SP
Sbjct: 1717 TDP-FSP 1722



 Score =  211 bits (536), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 131/224 (58%), Positives = 154/224 (68%), Gaps = 32/224 (14%)

Query: 1570 PTSPSYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA-YSPTSPAYSPTSPAYSP 1626
            P SPSY+    SP  +  SPS+   +   S    S+SPT     SPTSP Y+P SP  +P
Sbjct: 1512 PFSPSYAALMISPVVAANSPSFGSMNIDTSALGGSFSPTVQTPRSPTSPGYAPLSP--NP 1569

Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
             SP+YSP SP    TSP+YSPTSP+YSPTSP+YSPTSPAYSPTSP YSPTSP+YSPTSP 
Sbjct: 1570 LSPAYSPASP----TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA 1625

Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPN--YSPTSSSYSPTSPSYSP 1743
            YSPTSP+Y+P S       AYSP+SP  SP SP YSPTSP   YSPTS +YSPTSP+YSP
Sbjct: 1626 YSPTSPAYSPTSP------AYSPTSPAYSPTSPAYSPTSPKIGYSPTSPAYSPTSPAYSP 1679

Query: 1744 SSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
            +SP YSP+SP         YSP+SP       YSP++P YSP+S
Sbjct: 1680 TSPAYSPTSP--------AYSPTSP------AYSPTSPAYSPTS 1709



 Score =  197 bits (500), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 126/224 (56%), Positives = 150/224 (66%), Gaps = 35/224 (15%)

Query: 1577 PTSPSYSP--TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA-YSPTSPAYSPTSPSYSP 1633
            P SPSY+    SP  +  SPS+   +   S    ++SPT     SPTSP Y+P SP+  P
Sbjct: 1512 PFSPSYAALMISPVVAANSPSFGSMNIDTSALGGSFSPTVQTPRSPTSPGYAPLSPN--P 1569

Query: 1634 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
             SP+YSP SP    TSP+YSPTSP+YSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP 
Sbjct: 1570 LSPAYSPASP----TSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP- 1624

Query: 1694 YNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSP--SYSPSSPTYSP 1750
                        AYSP+SP  SP SP YSPTSP YSPTS +YSPTSP   YSP+SP YSP
Sbjct: 1625 ------------AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPKIGYSPTSPAYSP 1672

Query: 1751 SSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTP 1793
            +SP         YSP+SP YSP++  YSP++P YSP+S + Y+P
Sbjct: 1673 TSP--------AYSPTSPAYSPTSPAYSPTSPAYSPTSPA-YSP 1707


>gi|324120564|dbj|BAJ78673.1| RNA polymerase II largest subunit [Bemisia tabaci]
          Length = 1793

 Score = 1766 bits (4573), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 911/1675 (54%), Positives = 1157/1675 (69%), Gaps = 142/1675 (8%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I++ ET E G+PK GGL DPR G +DR  +
Sbjct: 6    SKAPLRSVKRVQFGILSPDEIRRMSVTEGGIQYPETMEGGRPKLGGLMDPRQGVVDRMSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM+ECPGHFGH++LAKP+ H+GF+   + ++R VCF CSK+L      K K+  
Sbjct: 66   CQTCAGNMSECPGHFGHIDLAKPVLHVGFITKTIKVLRCVCFYCSKLLVSPSHPKVKEIV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQD-----GEEPLKKNKGGCGAQQPKL 178
            +K +  P+ RL  I D CK K  CEGGDEID+  ++      E+P K+  GGCG  QP +
Sbjct: 126  MKSKGQPRKRLAFIYDLCKGKNICEGGDEIDIAKENPDDPSREQPKKQGHGGCGRYQPNI 185

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
               G+ + AE+K     N+D +      E+K  LTAERV  +LK I DE+C +LG++P+Y
Sbjct: 186  RRAGLDLTAEWK---HVNEDSQ------EKKIPLTAERVWEILKHIIDEECLILGMDPRY 236

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARPDWMI+  LP+PP  VRP+          DDLTH+L+ II+ N  L R E+ GA AH+
Sbjct: 237  ARPDWMIVTSLPVPPLSVRPAVVMHGSARNQDDLTHKLSDIIKCNNELIRNEKAGASAHV 296

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ISE  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I SRLK KEGRIRGNLMGKRVDFS
Sbjct: 297  ISENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKRVDFS 356

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVITPDP + IDQ+GVP SIA NLT+PE VTP+N +++KELV  G    PG   AKYI
Sbjct: 357  ARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFDKMKELVHRGNSQYPG---AKYI 413

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            +RD+G+R+DLR+  KSSD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+
Sbjct: 414  VRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPW 473

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  L + P+ I++PQ+N+PVMGIVQ
Sbjct: 474  STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQANKPVMGIVQ 533

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL   RK+TKRD F++KD  MNILM    +DGK+PQP ILKPRPLWTGKQVF+LIIP  
Sbjct: 534  DTLTAVRKMTKRDVFLDKDQMMNILMHLPIWDGKMPQPCILKPRPLWTGKQVFSLIIPGN 593

Query: 589  INLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
            +N+ RT + H D+ D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E
Sbjct: 594  VNMIRTHSTHPDDEDNGPYKWISPGDTKVVVEHGELVMGILCKKTLGTSAGSLLHICMLE 653

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
            +G +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++
Sbjct: 654  LGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYVEIQRAIKKAKADVIEVIQK 713

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS I
Sbjct: 714  AHNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNI 773

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FH
Sbjct: 774  NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFH 833

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+   
Sbjct: 834  AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGE 893

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
             +E Q + ++ +    F+  F+F+   E        ++ + +L    E+    + E ++L
Sbjct: 894  AVEFQKIATVDLSHKAFEDGFKFDPSNERHLRRIFNEDILKELMGSGEVISELEKEWEQL 953

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
              DR  L  +I  SG++   LP NLKR+IWN QK F ++ R P+D+ P++V++ V +L E
Sbjct: 954  SRDREAL-RQIFPSGETKVVLPCNLKRMIWNVQKIFHINQRAPTDLSPLKVIQGVKELLE 1012

Query: 1005 RLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
            +  +V GED LS +A +NATL F  L+RST  +K V ++ RL+ EAFEW++GEIE+RF Q
Sbjct: 1013 KCIIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVSEKFRLSSEAFEWLVGEIENRFQQ 1072

Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS 1124
            +  +PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PS
Sbjct: 1073 AQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132

Query: 1125 LSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
            L+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYE
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIREDQEFVNVYYE 1192

Query: 1185 MPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            MPD D  P +ISPWLLRIEL+R+ M DKKL+M A++EKIN  F DDL CIFNDDNA+KL+
Sbjct: 1193 MPDFD--PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNAEKLV 1250

Query: 1245 LRIRIMNDEAPKGELNDE-----SAEDDVFLKKIESNMLTEMALRGV------------- 1286
            LRIRIMN +  K  L DE       EDD+FL+ IE+NML++M L+G+             
Sbjct: 1251 LRIRIMNSDDNK--LQDEEDTVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQT 1308

Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                       +L+ V+   DVD  RT SN + EI  VLGIEAV
Sbjct: 1309 DSKKRIVVTETGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFAVLGIEAV 1368

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEE
Sbjct: 1369 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1428

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEG 1439
            TVD+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  IE+ +      
Sbjct: 1429 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKAGIEIPM------ 1482

Query: 1440 LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYS 1499
               G               GMMS   +F                  G MA +P+ SP  +
Sbjct: 1483 -NIGA--------------GMMSGAGMF-----------------FGSMA-TPSMSPQMT 1509

Query: 1500 PSSPGYSPSSPGYSPTSPGYSP-TSPGYSPTSPGYSPT-SPTYSPSSPGY--SPT----- 1550
            P + G   ++PGY      +SP    G +P  P +SP+ S   S  SPGY  SPT     
Sbjct: 1510 PWNVG---ATPGYGSV---WSPAVGSGMTPGGPNFSPSGSSDASGMSPGYAWSPTPGSPG 1563

Query: 1551 --SPAYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
               PA SP  PS  S  S SYSP+SP+Y+PTSPS +PTSP+YSPTSPSYSPTSP+
Sbjct: 1564 SPGPAMSPFIPSPASGMSQSYSPSSPAYAPTSPSMTPTSPNYSPTSPSYSPTSPN 1618



 Score = 60.8 bits (146), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 58/121 (47%), Gaps = 52/121 (42%)

Query: 1625 SPTSPSYSP--------TSPSY------------SPTSPSYSPT--------SPSY---- 1652
            S  +PS SP         +P Y            +P  P++SP+        SP Y    
Sbjct: 1498 SMATPSMSPQMTPWNVGATPGYGSVWSPAVGSGMTPGGPNFSPSGSSDASGMSPGYAWSP 1557

Query: 1653 ---SPTSP-----------------SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
               SP SP                 SYSP+SPAY+PTSP  +PTSP+YSPTSP+YSPTSP
Sbjct: 1558 TPGSPGSPGPAMSPFIPSPASGMSQSYSPSSPAYAPTSPSMTPTSPNYSPTSPSYSPTSP 1617

Query: 1693 S 1693
            +
Sbjct: 1618 N 1618



 Score = 43.9 bits (102), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 58/110 (52%), Gaps = 18/110 (16%)

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRL-SPA--SPYSPTSPNYSPTSSS-YSPTSPSYSP 1743
            S  +PS +PQ   ++  +  +P    + SPA  S  +P  PN+SP+ SS  S  SP Y+ 
Sbjct: 1498 SMATPSMSPQMTPWN--VGATPGYGSVWSPAVGSGMTPGGPNFSPSGSSDASGMSPGYAW 1555

Query: 1744 SSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAG----YSPSAPGYSPSSTS 1789
            S    SP SP       P  SP  P  SP++G    YSPS+P Y+P+S S
Sbjct: 1556 SPTPGSPGSP------GPAMSPFIP--SPASGMSQSYSPSSPAYAPTSPS 1597


>gi|324120570|dbj|BAJ78676.1| RNA polymerase II largest subunit [Neocolochelyna itoi]
          Length = 1815

 Score = 1762 bits (4564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 899/1638 (54%), Positives = 1135/1638 (69%), Gaps = 107/1638 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV    I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPIRVVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA- 124
            C+TC  NM ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L    + K K+  
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHVGFITKSIKILRCVCFYCSKLLVSPHNPKIKEVV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK----GGCGAQQPKLT 179
            +K +  P+ RL  + D CK+K  CEGGDE+D+  +  E+P   ++    GGCG  QP L 
Sbjct: 126  MKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKEGQEQPQAADRKPGHGGCGRYQPNLR 185

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
              G+ + AE+K     N+D +      E+K  LTAER   +LK I+DE+  +LG++PK+A
Sbjct: 186  RSGLDVSAEWK---HVNEDSQ------EKKIVLTAERAWEILKHITDEESFILGMDPKFA 236

Query: 240  RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RPDWMI+ VLP+PP  VRP+          DDLTH+LA II+ N  L R E+ GA AH+I
Sbjct: 237  RPDWMIVTVLPVPPLSVRPAVVMYGSAKNQDDLTHKLADIIKSNNELLRNEQAGAAAHVI 296

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            SE  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSA
Sbjct: 297  SENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 356

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ELV  G    PG   AKYI+
Sbjct: 357  RTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPG---AKYIV 413

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD+G+R+DLR+  K SD HL+ GY+VERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+S
Sbjct: 414  RDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWS 473

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQD
Sbjct: 474  TFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQD 533

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK+TKRD FIEK+  MNILM    +DGK+PQP ILKP+PLWTGKQ+F+LIIP  +
Sbjct: 534  TLTAVRKMTKRDVFIEKEQMMNILMHLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNV 593

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            N+ RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E+
Sbjct: 594  NMIRTHSTHPDEEDDGQYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G D   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A
Sbjct: 654  GHDVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS IN
Sbjct: 714  HNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHA
Sbjct: 774  ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    
Sbjct: 834  MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGET 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E Q L ++K+    F+K F+F+   E +      ++ + ++    E+    + E ++L 
Sbjct: 894  VEFQNLPTIKLSNKAFEKKFKFDPTNERYLRRIFSEDIVREMMGSGEVISELEREWEQLN 953

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L  EI  SG+S   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V  L E+
Sbjct: 954  KDRVAL-REIFPSGESKVVLPCNLQRMIWNGQKIFHINKRAPTDLSPIRVIQGVKDLLEK 1012

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
              +V G+D LS  A  NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+
Sbjct: 1013 CIIVAGKDDLSKLANTNATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQA 1072

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
             V PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL
Sbjct: 1073 QVFPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSL 1132

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEM
Sbjct: 1133 TVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEM 1192

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PD D  P KISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+L
Sbjct: 1193 PDFD--PTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVL 1250

Query: 1246 RIRIMNDEAPKGELNDESA----EDDVFLKKIESNMLTEMALRGV--------------- 1286
            RIRIMN +  K +  +E      EDD+FL+ IE+NML++M L+G+               
Sbjct: 1251 RIRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1310

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     +L+ V+   DVD  RT SN + EI +VLGIEAVR+
Sbjct: 1311 KKRIVVTDTGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1370

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLE 1441
            D+LLDAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  IE+ +      + 
Sbjct: 1431 DVLLDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDAEKCKAGIEIPMAVGAGMMG 1490

Query: 1442 F-------GMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS 1494
                      TP+ SP   TP++    +PGY  S    +SP   +  +P  GG  FSP+ 
Sbjct: 1491 GAGMFFGSAATPSMSP-QMTPWNQMGATPGYGASS---MSPALGSGMTP--GGACFSPSG 1544

Query: 1495 SPGYSPSSPGYS------------PSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSP 1542
            +   S  SP YS              S    P SP     SP YSPTSP Y PTSP+ +P
Sbjct: 1545 ASDASGLSPAYSVYSPQPGSPGSPGPSMSPYPMSPA-GGASPSYSPTSPAYLPTSPSMTP 1603

Query: 1543 SSPGYSPTSPAYSPTSPS 1560
            SSP YSPTSP YSPTSP+
Sbjct: 1604 SSPNYSPTSPTYSPTSPN 1621



 Score = 70.5 bits (171), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 62/124 (50%), Gaps = 36/124 (29%)

Query: 1527 SPTSPGYSP---------TSPTYSPSS------PGYSPTSPAYSPTSPS-YSPTSPSYS- 1569
            S  +P  SP          +P Y  SS       G +P    +SP+  S  S  SP+YS 
Sbjct: 1498 SAATPSMSPQMTPWNQMGATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSPAYSV 1557

Query: 1570 ------------------PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
                              P SP+    SPSYSPTSP+Y PTSPS +P+SP+YSPTSP YS
Sbjct: 1558 YSPQPGSPGSPGPSMSPYPMSPA-GGASPSYSPTSPAYLPTSPSMTPSSPNYSPTSPTYS 1616

Query: 1612 PTSP 1615
            PTSP
Sbjct: 1617 PTSP 1620


>gi|340722779|ref|XP_003399779.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
            terrestris]
 gi|350424170|ref|XP_003493710.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
            impatiens]
          Length = 1902

 Score = 1762 bits (4563), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 897/1636 (54%), Positives = 1138/1636 (69%), Gaps = 115/1636 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV    I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L    + K K+  
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPKIKEIV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK---GGCGAQQPKLTI 180
            +K +  P+ RL  + D CK+K  CEGGDE+D+  ++ E+   + K   GGCG  QP L  
Sbjct: 126  MKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQEQQSAERKPGHGGCGRYQPNLRR 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ + AE+      N+D +      E+K  LTAER   +LK I+DE+  +LG++PK+AR
Sbjct: 186  SGLDVTAEWT---HVNEDSQ------EKKMALTAERAWEILKHITDEESFILGMDPKFAR 236

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWM++ VLP+PP  VRP+          DDLTH+LA II+ N  L R E+ GA AH+IS
Sbjct: 237  PDWMVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVIS 296

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 297  ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ELV  G    PG   AKYI+R
Sbjct: 357  TVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPG---AKYIVR 413

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  K SD HL+ GY+VERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 414  DNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWST 473

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 474  FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDT 533

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD FIEK+  MNILM+   ++GK+PQP ILKP+PLWTGKQ+F+LIIP  +N
Sbjct: 534  LTAVRKMTKRDVFIEKEQMMNILMFLPSWNGKMPQPCILKPKPLWTGKQIFSLIIPGNVN 593

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E+G
Sbjct: 594  MIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELG 653

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A 
Sbjct: 654  HEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAH 713

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 714  NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 773

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETV 893

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E Q L ++K+    F+K F+F+   E +      ++ + ++    E+    + E ++L  
Sbjct: 894  EFQNLPTIKLSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNK 953

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L  EI  SG+S   LP NL+R+IWN QK F ++ R P+D+ PM V++ V  L ++ 
Sbjct: 954  DRAIL-REIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLDKC 1012

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +V G+D LS +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+ 
Sbjct: 1013 IIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQ 1072

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
            V+PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+
Sbjct: 1073 VSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 1132

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMP
Sbjct: 1133 VFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMP 1192

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D  P KISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LR
Sbjct: 1193 DFD--PNKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLR 1250

Query: 1247 IRIMNDEAPKGELNDESA----EDDVFLKKIESNMLTEMALRGV---------------- 1286
            IRIMN +  K + ++E      EDD+FL+ IE+NML++M L+G+                
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAK 1310

Query: 1287 ------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                    +L+ V+   DVD  RT SN + EI EVLGIEAVR++
Sbjct: 1311 KRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFEVLGIEAVRKS 1370

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            +  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD
Sbjct: 1371 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1430

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM----- 1437
            +LLDAA  AE D +RGV+ENI++GQL  IGTG   L L+ E  K  IE+ +         
Sbjct: 1431 VLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGT 1490

Query: 1438 EGLEFG--MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSS 1495
             G+ FG   TP+ SP   TP+     +PGY  S    +SP   +  +P  GG  FSP+ +
Sbjct: 1491 AGMFFGSVATPSMSP-QMTPWMGA--TPGYGAS---SMSPALGSGMTP--GGACFSPSGA 1542

Query: 1496 PGYSPSSPGYS-------------------PSSPGYSPTSPGYSPTSPGYSPTSPGYSPT 1536
               S  SP YS                   P SP     SP YSPTSP Y PTSP  +P+
Sbjct: 1543 SDASGLSPAYSAYSPQPGSPGSPGPSMSPYPMSPA-GGASPSYSPTSPAYLPTSPSITPS 1601

Query: 1537 SPTYSPSSPGYSPTSP 1552
            SP YSP+SP YSPTSP
Sbjct: 1602 SPNYSPTSPTYSPTSP 1617



 Score = 95.5 bits (236), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 71/124 (57%), Gaps = 41/124 (33%)

Query: 1659 YSPTSPAYSPT-----------------------------SPGYSPTSPSYSPTSPTYSP 1689
            ++ TSP Y+P                              S  YSP+SP+YSPTSPTYSP
Sbjct: 1785 FAGTSPQYTPASPTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSP 1844

Query: 1690 TSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYS 1749
            TSP Y+P S KYSP+   SP+         Y+PTSP+YSPTS +YSP  P YSP+SPTYS
Sbjct: 1845 TSPQYSPSSTKYSPT---SPT---------YTPTSPSYSPTSPTYSPPVPGYSPTSPTYS 1892

Query: 1750 PSSP 1753
            P+SP
Sbjct: 1893 PASP 1896



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/124 (43%), Positives = 70/124 (56%), Gaps = 15/124 (12%)

Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPT 1599
            S ++P  SP    +   +P Y  +S S +  S   +P    +SP+  S  S  SP+YS  
Sbjct: 1497 SVATPSMSPQMTPWMGATPGYGASSMSPALGS-GMTPGGACFSPSGASDASGLSPAYSAY 1555

Query: 1600 SPSYS------------PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
            SP               P SPA    SP+YSPTSPAY PTSPS +P+SP+YSPTSP+YSP
Sbjct: 1556 SPQPGSPGSPGPSMSPYPMSPA-GGASPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSP 1614

Query: 1648 TSPS 1651
            TSP+
Sbjct: 1615 TSPN 1618


>gi|307181433|gb|EFN69028.1| DNA-directed RNA polymerase II subunit RPB1 [Camponotus floridanus]
          Length = 1906

 Score = 1761 bits (4562), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 898/1643 (54%), Positives = 1139/1643 (69%), Gaps = 118/1643 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV    I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L    + K K+  
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPKIKEIV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP----LKKNKGGCGAQQPKLT 179
            +K +  P+ RL  + D CK+K+ CEGGDE+D+  ++ E       K   GGCG  QP L 
Sbjct: 126  MKTKGQPRKRLAFVYDLCKSKSICEGGDEMDINKENAENQPQMDRKPGHGGCGRYQPNLR 185

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
              G+ + AE+K     N+D +      E+K  L+AER   +LK I DE+  +LG++PK+A
Sbjct: 186  RSGLDVTAEWK---HVNEDSQ------EKKMILSAERAWEILKHIKDEESFILGMDPKFA 236

Query: 240  RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RPDWMI+ VLP+PP  VRP+          DDLTH+LA II+ N  L R E++GA AH+I
Sbjct: 237  RPDWMIVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELLRNEQSGAAAHVI 296

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
             E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSA
Sbjct: 297  LENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 356

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ LV  G    PG   AKYI+
Sbjct: 357  RTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPG---AKYIV 413

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD+G+R+DLR+  KSSD HL+ GY+VERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+S
Sbjct: 414  RDNGERIDLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWS 473

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQD
Sbjct: 474  TFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQD 533

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK+TKRD FIEK+  MN+LM+   +DGK+PQP ILKP+PLWTGKQ+F+LIIP  +
Sbjct: 534  TLTAVRKMTKRDVFIEKEQMMNLLMFLPSWDGKMPQPCILKPKPLWTGKQLFSLIIPGNV 593

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            N+ RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E+
Sbjct: 594  NMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G D   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A
Sbjct: 654  GHDVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS IN
Sbjct: 714  HNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHA
Sbjct: 774  ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    
Sbjct: 834  MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGET 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E Q L ++K+    F+K F+F+   E +      ++ + ++    E+    + E ++L 
Sbjct: 894  VEFQNLPTIKVSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLN 953

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L  EI  SG+S   LP NL+R+IWN QK F ++ R P+D+ PM V++ V  L ++
Sbjct: 954  KDRAVL-REIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLDK 1012

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
              +V G+D LS +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+
Sbjct: 1013 CIIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQA 1072

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
             V+PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL
Sbjct: 1073 QVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSL 1132

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +VFL        E+AKNV C LE+TTL+ VT  T ++YDPDP  T+I ED EFV  YYEM
Sbjct: 1133 TVFLTGAAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEM 1192

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PD D  P KISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+L
Sbjct: 1193 PDFD--PTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVL 1250

Query: 1246 RIRIMNDEAPKGELNDESA----EDDVFLKKIESNMLTEMALRGV--------------- 1286
            RIRIMN +  K +  +E      EDD+FL+ IE+NML++M L+G+               
Sbjct: 1251 RIRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1310

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     +L+ V+   DVD  RT SN + EI +VLGIEAVR+
Sbjct: 1311 KKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1370

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1371 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM---- 1437
            D+LLDAA  AE D +RGV+ENI++GQL  IGTG   L L+ E  K+ IE+ +        
Sbjct: 1431 DVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKSGIEIPMAVGAGMGT 1490

Query: 1438 EGLEFG--------MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMA 1489
             G+ FG        M+P  +P  G        +PGY  S    +SP   +  +P  GG  
Sbjct: 1491 AGMFFGSVTGISNSMSPQMTPWMGA-------TPGYGAS---SMSPALSSGMTP--GGAC 1538

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYS------------PTSPGYSPTSPGYSPTSPGYSPTS 1537
            FSP+ +   S  SP YS  SP               P SP     SP YSPTSP Y PTS
Sbjct: 1539 FSPSGASDASGLSPAYSAYSPQPGSPGSPGPSMSPFPMSPA-GAASPSYSPTSPAYLPTS 1597

Query: 1538 PTYSPSSPGYSPTSPAYSPTSPS 1560
            P+ +PSSP YSPTSP YSPTSP+
Sbjct: 1598 PSMTPSSPNYSPTSPTYSPTSPN 1620


>gi|391335740|ref|XP_003742247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Metaseiulus occidentalis]
          Length = 1842

 Score = 1761 bits (4561), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 917/1633 (56%), Positives = 1157/1633 (70%), Gaps = 107/1633 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +VR VQFGIL PDEIR+MSV +  I + E  E  +PK GGL DPR G IDR  +
Sbjct: 9    SKATLREVREVQFGILDPDEIRRMSVTEGGIRYAEIYEGNRPKLGGLMDPRQGVIDRTSR 68

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C TC+ NM ECPGHFGHLELAKP+FH+GF+   L ++R VC+ CS++L   +  + ++ L
Sbjct: 69   CLTCSGNMTECPGHFGHLELAKPVFHVGFLTKTLKVLRCVCYYCSRLLVSPNHPRMREIL 128

Query: 126  -KIRN-PKNRLKKILDACKNKTKCEGGDEIDV-PGQDGEEPLKKNKGGCGAQQPKLTIEG 182
             K R   + RL K+ + CK K  CE  D  D   G+  EE  K    GCG  QP     G
Sbjct: 129  TKTRTMQRQRLDKVYEVCKAKRMCEESDTSDKGQGEPTEEEKKTMHVGCGRFQPNYRRSG 188

Query: 183  MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
            + + AE+K     N+D +      E+KQ LTAERV  + K IS+E+C  LG++ +YA+PD
Sbjct: 189  LDISAEWK---HTNEDNQ------EKKQVLTAERVYEIFKHISEEECFCLGMDERYAKPD 239

Query: 243  WMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
            WM+L VL +PP  VRP+          DDLTH+L+ I++ N  + R E++GA  HI++E 
Sbjct: 240  WMVLTVLAVPPLCVRPAVVMFGSARNQDDLTHKLSDIVKANNEIIRNEQSGAAPHILTEN 299

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
             ++LQFH+AT +DNELPG PRA Q+SGRP+KS+  RLKAKEGRIRGNLMGKRVDFSARTV
Sbjct: 300  VKMLQFHVATLYDNELPGLPRAMQKSGRPLKSLKQRLKAKEGRIRGNLMGKRVDFSARTV 359

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
            ITPDP + ID++GVP SIA NLT+PE VTP+NIE ++ELV  G +  PG   AKYI+RD+
Sbjct: 360  ITPDPNLKIDEVGVPRSIAQNLTFPEIVTPFNIEWMQELVSRGNNQYPG---AKYIVRDN 416

Query: 413  GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
            G+R+DLR+  K+SD HL+ GYKVERH+ +GD ++FNRQP+LHKMS+MGH+I+++P+STFR
Sbjct: 417  GERIDLRFHPKASDLHLQCGYKVERHVQNGDIIVFNRQPTLHKMSMMGHKIRVLPWSTFR 476

Query: 473  LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
            +NLSVT+PYNADFDGDEMNMHVPQS ETRAE+ +L MVP+ I++PQ+N+PVMGIVQDTL 
Sbjct: 477  MNLSVTTPYNADFDGDEMNMHVPQSLETRAEIEQLAMVPRQIITPQANKPVMGIVQDTLT 536

Query: 533  GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
              RK+TKRD ++EKD  MN+LM+   ++GKVP P ILKP+PLWT KQ+F+LIIP  +NL 
Sbjct: 537  AVRKMTKRDVYLEKDQMMNLLMFLPIWNGKVPIPAILKPKPLWTAKQLFSLIIPGNVNLI 596

Query: 593  RTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            RT + H D  D G    ++ GDT V IE G+LLSG +CKKT+G S GSL+HV++ E+G  
Sbjct: 597  RTHSTHPDEEDDGPYKWISPGDTKVIIEHGQLLSGIVCKKTVGASAGSLMHVLFVEMGHR 656

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
             A  F  H Q +VN WLL    SIGIGDTIAD +T   I +TI KAK +V  +I++A + 
Sbjct: 657  VAGAFYSHLQTVVNAWLLYEGHSIGIGDTIADQQTYMDIQNTIKKAKQDVIEVIEKAHND 716

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             LEP PG T+ ++FEN+VN++LN ARD+ G SAQKSLSE NN K+MV +G+KGS INISQ
Sbjct: 717  ELEPTPGNTLRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKSMVVSGAKGSKINISQ 776

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            + ACVGQQNVEGKRIPFGF  RTLPHF KDD+GPESRGFVENSYL GLTP EFFFHAMGG
Sbjct: 777  VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYLAGLTPSEFFFHAMGG 836

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRL+KAME +M+ YDGTVRNS G VIQF YGEDG+D   +ES
Sbjct: 837  REGLIDTAVKTAETGYIQRRLIKAMESVMICYDGTVRNSNGQVIQFRYGEDGLDGCCVES 896

Query: 889  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
            Q L ++K    +F++ FRF++  E        ++ I +L +        + E   L+ DR
Sbjct: 897  QYLTTIKPSNRQFEQKFRFDVTNEKLLRKVYTEDVIKELNSSASAVAEMEREWDCLKKDR 956

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
             ++   +  +G SS  LP NL R++WNAQKTF+V+ R  SD+ P+ V+E V+ L ++L +
Sbjct: 957  -EILRNVFPTGSSSVVLPCNLSRMVWNAQKTFRVNSRGKSDLSPLRVIEGVESLVKKLII 1015

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            VPGED LS++A +NATL F  LLRST  S+RV +E RL+ EAF+W++GEIE+RF QS   
Sbjct: 1016 VPGEDHLSIQANENATLLFRALLRSTLCSRRVGQEFRLSTEAFDWLLGEIEARFHQSQGH 1075

Query: 1069 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1128
            PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN++K+ KTPSL+VF
Sbjct: 1076 PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKQPKTPSLTVF 1135

Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1188
            LK       E+AK+V C LE+TTLR VT  T ++YDPDP  T+I ED +FV  YYEMPD 
Sbjct: 1136 LKGASARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQDFVNVYYEMPDF 1195

Query: 1189 DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
            D  P KISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNADKL+LRIR
Sbjct: 1196 D--PTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRIR 1253

Query: 1249 IMNDEAPK----GELNDESAEDDVFLKKIESNMLTEMALRGV------------------ 1286
            IMN++  K     E   +  EDDVFL+ IESNML++M L+G+                  
Sbjct: 1254 IMNNDGDKFTDGAEEQADKMEDDVFLRCIESNMLSDMTLQGIEAISKVYMHLPTTDDKKR 1313

Query: 1287 ----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                                  +L+ V+   DVD  RT SN +IE+  VLGIEAVR+A+ 
Sbjct: 1314 IVVTETGEFKAISEWLLETDGTSLMRVLSERDVDPVRTYSNDIIEVFSVLGIEAVRKAVE 1373

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
             E+  VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVDIL
Sbjct: 1374 KEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDIL 1433

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS-YMEGLE-- 1441
            +DAA  AE+D L+GV+ENI+LG+LA +GTG   L L+ E  K+ IE+ +    MEGL   
Sbjct: 1434 MDAAFHAEADKLKGVSENIILGKLARMGTGAFDLMLDAEKCKHGIEVSMAIPGMEGLPGQ 1493

Query: 1442 ---FGMTPARSPVSG-----TPYHDGMMSPGY-LFSPNLRLSPVTDAQFSPYVGG-MAFS 1491
               FG   A +P+ G     TP++ G  +P Y ++SP   ++P   A FSP     + FS
Sbjct: 1494 GVFFG--SAATPMGGMSPQMTPWNAG-QTPAYGMWSPTSNMTPGA-AGFSPSAQSEVGFS 1549

Query: 1492 PTSSPGYSPS-SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP--TSPTYSPSSPGYS 1548
            P  SP YSP+ SPG SPSSP Y      YSP   G S  SP YSP  TSP+YSPSSP Y+
Sbjct: 1550 PAYSPAYSPAQSPG-SPSSPAY------YSPLHVGGS--SPSYSPQITSPSYSPSSPSYN 1600

Query: 1549 PTSPAYSPTSPSY 1561
              SP+YSPTSP Y
Sbjct: 1601 LASPSYSPTSPQY 1613



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/119 (48%), Positives = 74/119 (62%), Gaps = 16/119 (13%)

Query: 1537 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPS 1595
            SP  +P + G +P    +SPTS + +P +  +SP++ S    SP+YSP  SP+ SP SPS
Sbjct: 1508 SPQMTPWNAGQTPAYGMWSPTS-NMTPGAAGFSPSAQSEVGFSPAYSPAYSPAQSPGSPS 1566

Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP--TSPSYSPTSPSYSPTSPSYSPTSPSY 1652
                SP+Y      YSP     S  SP+YSP  TSPSYSP+SPSY+  SPSYSPTSP Y
Sbjct: 1567 ----SPAY------YSPLHVGGS--SPSYSPQITSPSYSPSSPSYNLASPSYSPTSPQY 1613



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 58/117 (49%), Positives = 73/117 (62%), Gaps = 19/117 (16%)

Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPAYSPTSPA 1616
            SP  +P +   +P    +SPTS + +P +  +SP++ S    SP+YSP  SPA SP    
Sbjct: 1508 SPQMTPWNAGQTPAYGMWSPTS-NMTPGAAGFSPSAQSEVGFSPAYSPAYSPAQSPG--- 1563

Query: 1617 YSPTSPAYSPTSPSYSP-----TSPSYSP--TSPSYSPTSPSYSPTSPSYSPTSPAY 1666
             SP+SPAY      YSP     +SPSYSP  TSPSYSP+SPSY+  SPSYSPTSP Y
Sbjct: 1564 -SPSSPAY------YSPLHVGGSSPSYSPQITSPSYSPSSPSYNLASPSYSPTSPQY 1613



 Score = 60.5 bits (145), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 72/117 (61%), Gaps = 19/117 (16%)

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT-SPSYSPTSPS 1637
            SP  +P +   +P    +SPTS + +P +  +SP++ +    SPAYSP  SP+ SP SPS
Sbjct: 1508 SPQMTPWNAGQTPAYGMWSPTS-NMTPGAAGFSPSAQSEVGFSPAYSPAYSPAQSPGSPS 1566

Query: 1638 YSPTSPSYSPTSPSYSP-----TSPSYSP--TSPAYSPTSPGYSPTSPSYSPTSPTY 1687
                SP+Y      YSP     +SPSYSP  TSP+YSP+SP Y+  SPSYSPTSP Y
Sbjct: 1567 ----SPAY------YSPLHVGGSSPSYSPQITSPSYSPSSPSYNLASPSYSPTSPQY 1613


>gi|324500036|gb|ADY40031.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
          Length = 1840

 Score = 1761 bits (4561), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 946/1845 (51%), Positives = 1246/1845 (67%), Gaps = 113/1845 (6%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKC 66
            Y  A + +++ VQFGILSPDEI+ MSV +IE  +T E G PK GGL DPR G +DR+ +C
Sbjct: 36   YYRAPLREIKRVQFGILSPDEIKDMSVCEIEFSQTYEDGVPKRGGLMDPRQGVVDRRGRC 95

Query: 67   ETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK 126
             TC    A+CPGHF H+ LAKP+FH+G +   L ++R VCF CS++L  +++ + ++ L 
Sbjct: 96   TTCCGGQADCPGHFAHITLAKPVFHVGLVSKTLKVLRCVCFYCSRVLVSKNNERVRRILS 155

Query: 127  --IRNPKNRLKKILDACKNKTKCEGGDE-IDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
                NP+ R + I   CK KT C+  DE +D+  +         K  CG  QP     G+
Sbjct: 156  KTTGNPRRRFELIYALCKTKTACDDADEEVDIIEEYA-------KSACGRYQPSYRRTGI 208

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
            ++ AE+K  R+ ND+Q+      E K  L+AERVL + KRI+DEDC +LG++P++ARPDW
Sbjct: 209  EITAEWK--RRANDEQQ------EHKLVLSAERVLEIFKRIADEDCIVLGMDPRFARPDW 260

Query: 244  MILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            MI+Q LP+PP  VRP+          DDLTH+L+ I+  N  L+R ERNGA AH+I++  
Sbjct: 261  MIIQELPVPPLAVRPAVATFGSARNQDDLTHKLSDIVNANNQLKRNERNGAAAHVIADDL 320

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
            +LLQ+H+AT+ DN +PG P ATQ+ GRP+KS+  RLK KEGRIRGNLMGKRVDFSARTVI
Sbjct: 321  KLLQYHVATFIDNSVPGLPTATQKGGRPLKSLKQRLKGKEGRIRGNLMGKRVDFSARTVI 380

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            TPDP + ID +GVP +IA N+T+PE VTP+NI+ L+ELV  G    PG   AKY+IR +G
Sbjct: 381  TPDPNLPIDTVGVPRTIAQNMTFPEIVTPFNIDELQELVNRGDAQYPG---AKYVIRSNG 437

Query: 414  QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
            +R+DLRY  ++SD  ++ GYKVERH+ DGD ++FNRQP+LHKMS+MGH++KI+P+STFRL
Sbjct: 438  ERVDLRYHPRASDLVIQPGYKVERHMRDGDIIVFNRQPTLHKMSMMGHKVKILPWSTFRL 497

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NLSVT+PYNADFDGDEMN+H+PQS ET+AE+ E+ MVP+ +++PQ+N+PVMGIVQD L  
Sbjct: 498  NLSVTTPYNADFDGDEMNLHLPQSLETKAEIAEIAMVPRQLITPQANKPVMGIVQDALTA 557

Query: 534  CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
               +TKRDTFIE    M++LM   D++ K+PQP ILKP+ LWTGKQ+F+LIIP ++N+  
Sbjct: 558  VYMLTKRDTFIEAARLMDLLMHMPDWNAKIPQPAILKPKRLWTGKQLFSLIIPGEVNVEL 617

Query: 594  TAAWHADNDKG----ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
              + H D++       ++ GDT V +E+G LLSG +C +T+G S GSL+HV+  E+G D 
Sbjct: 618  NHSTHPDDENAGEYKWISPGDTKVLVERGVLLSGIICSRTVGRSAGSLLHVVTLELGFDV 677

Query: 650  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
            A +F    Q   N WLL    +IGI D IAD  T   I +TI KAK +V  +I++A+  S
Sbjct: 678  AAQFYSQIQTTANAWLLAEGQTIGIADAIADRATYSHIQETIKKAKMDVVEVIERARKDS 737

Query: 710  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
            ++   G T++++FE+K+N +LN ARD  GSSAQ+SLS  NN KAMV AGSKGS INISQ+
Sbjct: 738  IKVTRGNTLLQTFESKINNILNNARDRTGSSAQRSLSADNNFKAMVVAGSKGSKINISQV 797

Query: 770  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
             ACVGQQNVEGKRIPFGF  RTLPHF +DD GPE++GFVENSYL GLTP EFFFHAMGGR
Sbjct: 798  IACVGQQNVEGKRIPFGFRHRTLPHFIRDDCGPEAKGFVENSYLAGLTPSEFFFHAMGGR 857

Query: 830  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
            EGLIDTAVKT+ETGYIQRRL+KAME IMV YDGTVRN+LG+V+Q  YGEDG+D  W+E+Q
Sbjct: 858  EGLIDTAVKTAETGYIQRRLMKAMESIMVNYDGTVRNALGEVVQLSYGEDGLDGTWVENQ 917

Query: 890  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRY 949
            T+ +++   + F+K F+ ++ ++        ++ + +L    E+     AE  +L  DR 
Sbjct: 918  TMPTMRPTTALFEKKFKMDLLDKTALRRLYTEDVVKELADPLEVEKQLQAEWNQLVEDR- 976

Query: 950  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1009
            +L  +I   G+++  LP NL+R+IWNA+  +    R P+D+ P++V++ V +L +RL VV
Sbjct: 977  RLLRKIFRRGEANVVLPCNLQRMIWNARTNYGDTSREPTDLSPLKVIKEVQELCKRLIVV 1036

Query: 1010 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1069
             G D +S +AQ NATL   +LLRST  SKR+  EH+L  + FEW++GEIESRF +++V P
Sbjct: 1037 RGGDSISKQAQDNATLLMCMLLRSTLCSKRMAVEHKLNADGFEWLLGEIESRFNRAIVYP 1096

Query: 1070 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1129
            GEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+KK KTPSL++FL
Sbjct: 1097 GEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTIFL 1156

Query: 1130 KPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDED 1189
             PG+ S   RA ++QC +E+ TLR VT +T + YDPDPM T++EED E++  ++E+   +
Sbjct: 1157 APGLGSDVRRANDLQCRMEHCTLRKVTSSTMIIYDPDPMNTVVEEDREWLNVFFEL--FN 1214

Query: 1190 IAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI 1249
            + P   SPWLLRIEL+ + MVD+KLS+  +AEKI   F DDL     DDNA+KLILR+R+
Sbjct: 1215 LNPSGTSPWLLRIELDHKRMVDQKLSLEMIAEKIRDGFGDDLMVTHTDDNAEKLILRLRL 1274

Query: 1250 MNDEAPKGE-LNDESAE-DDVFLKKIESNMLTEMALRGVN-------------------- 1287
                  K E +N+ S   D+  L+ +   ML+ + L+G+                     
Sbjct: 1275 SEQHDKKSEDINEASVRNDEAVLRCLGVTMLSNLTLQGIESITKVYVHNAVEPERKRAVE 1334

Query: 1288 --------------------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                                L  V+   D+DA RTT+N + E+ EVLGIEA R+A+  E+
Sbjct: 1335 TPDGGLMQPAEWILETDGTALAKVLSEPDIDATRTTTNDICEVFEVLGIEAARKAIEREM 1394

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VISFDGSYVNYRHLA+LCD MT +G+LMAI+RHGINR + G +MRCSFEETVDIL +A
Sbjct: 1395 NHVISFDGSYVNYRHLALLCDVMTAKGYLMAISRHGINRQEMGALMRCSFEETVDILTEA 1454

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQ----LPSYMEGLEF- 1442
            AV  E D+++GV+ENIMLGQLA  GTG   L ++ E  K  ++LQ    L +    L   
Sbjct: 1455 AVHTEQDFIKGVSENIMLGQLARGGTGCFDLLIDVENCKQGMQLQPACPLSASTRSLWLS 1514

Query: 1443 GMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSS 1502
            G +PA S    TP +    S     +PN+  +P T A F+P      FSP     +SPSS
Sbjct: 1515 GNSPAASRAMVTPAYASERS----CTPNI--TP-TSAVFTPSGISEGFSPYGHANWSPSS 1567

Query: 1503 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYS 1562
            P +        P+SP    ++PGY PTSP           +SPG+SP SP+Y P+SP Y+
Sbjct: 1568 PLHISDRDTDYPSSPCQFGSTPGYGPTSPSLG--------TSPGFSPISPSYLPSSPDYA 1619

Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
             TSP  +P S  YSP S S+SP S  Y +P+S   SP SP+YSP SP+YSP SPAYSP+S
Sbjct: 1620 ATSPMVTP-SAGYSPKSLSHSPMSLVYYNPSSSGCSPISPNYSPRSPSYSPLSPAYSPSS 1678

Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
            P+Y+P SPS + TSPSY P SPSYSPTSPSY+PTSP+YSPTSP YSPTSPGY PTSP Y 
Sbjct: 1679 PSYNPLSPSCNLTSPSYDPASPSYSPTSPSYNPTSPNYSPTSPIYSPTSPGYEPTSPRYV 1738

Query: 1682 PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSP----T 1737
            PTSP Y  T   Y P    YS +   +P     +      PTSP YSP+S  YSP    T
Sbjct: 1739 PTSPGYLGTP--YTPSCQVYSGN---NPDRCSTTQGDVSRPTSPIYSPSSPCYSPSYGGT 1793

Query: 1738 SPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP--QYSPSAGYSPSA 1780
            S  Y P+SP YSPS+          Y+ SSP   Y   A   PSA
Sbjct: 1794 SLRYCPTSPVYSPSAGATGRPATVSYTASSPCVVYGILAMLFPSA 1838



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 121/297 (40%), Positives = 160/297 (53%), Gaps = 56/297 (18%)

Query: 1550 TSPAYSP---TSPSYSPTSPSYSPT--SPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSY 1603
             +PAY+     +P+ +PTS  ++P+  S  +SP    ++SP+SP +     +  P+SP  
Sbjct: 1525 VTPAYASERSCTPNITPTSAVFTPSGISEGFSPYGHANWSPSSPLHISDRDTDYPSSPCQ 1584

Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
              ++P Y PTSP+   TSP +SP SPSY P+SP Y+ TSP  +P S  YSP S S+SP S
Sbjct: 1585 FGSTPGYGPTSPSLG-TSPGFSPISPSYLPSSPDYAATSPMVTP-SAGYSPKSLSHSPMS 1642

Query: 1664 PAY-SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA----- 1717
              Y +P+S G SP SP+YSP SP+YSP SP+Y+P S  Y+P    SPS    SP+     
Sbjct: 1643 LVYYNPSSSGCSPISPNYSPRSPSYSPLSPAYSPSSPSYNP---LSPSCNLTSPSYDPAS 1699

Query: 1718 -------SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAG-----------GG 1759
                     Y+PTSPNYSPTS  YSPTSP Y P+SP Y P+SP   G           G 
Sbjct: 1700 PSYSPTSPSYNPTSPNYSPTSPIYSPTSPGYEPTSPRYVPTSPGYLGTPYTPSCQVYSGN 1759

Query: 1760 NPDYS---------PSSP------------QYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
            NPD           P+SP                S  Y P++P YSPS+ +   P T
Sbjct: 1760 NPDRCSTTQGDVSRPTSPIYSPSSPCYSPSYGGTSLRYCPTSPVYSPSAGATGRPAT 1816



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/256 (39%), Positives = 139/256 (54%), Gaps = 41/256 (16%)

Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPT--SPAYSPTSPA-YSPTSPSYSPTSPSYSPTSPSYS 1646
            +P   S    +P+ +PTS  ++P+  S  +SP   A +SP+SP +     +  P+SP   
Sbjct: 1526 TPAYASERSCTPNITPTSAVFTPSGISEGFSPYGHANWSPSSPLHISDRDTDYPSSPCQF 1585

Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS-- 1704
             ++P Y PTSPS          TSPG+SP SPSY P+SP Y+ TSP   P SA YSP   
Sbjct: 1586 GSTPGYGPTSPSLG--------TSPGFSPISPSYLPSSPDYAATSPMVTP-SAGYSPKSL 1636

Query: 1705 -------LAYSPSSPRLSPASP-YSPTSPNY-------SPTSSSYSPTSPSYSPSSPTYS 1749
                   + Y+PSS   SP SP YSP SP+Y       SP+S SY+P SPS + +SP+Y 
Sbjct: 1637 SHSPMSLVYYNPSSSGCSPISPNYSPRSPSYSPLSPAYSPSSPSYNPLSPSCNLTSPSYD 1696

Query: 1750 PSSPYNAGGG------NPDYSPSSPQYSPSA-GYSPSAPGYSPSS----TSQYTPQTNRD 1798
            P+SP  +         +P+YSP+SP YSP++ GY P++P Y P+S     + YTP     
Sbjct: 1697 PASPSYSPTSPSYNPTSPNYSPTSPIYSPTSPGYEPTSPRYVPTSPGYLGTPYTPSCQVY 1756

Query: 1799 DSTTKDD-KNTKGDKS 1813
                 D    T+GD S
Sbjct: 1757 SGNNPDRCSTTQGDVS 1772



 Score =  103 bits (257), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 104/326 (31%), Positives = 129/326 (39%), Gaps = 145/326 (44%)

Query: 1605 PTSPAYSPT-----------------SPAYS----------PTSPAYSP----------- 1626
            P  P  + T                 +PAY+          PTS  ++P           
Sbjct: 1500 PACPLSASTRSLWLSGNSPAASRAMVTPAYASERSCTPNITPTSAVFTPSGISEGFSPYG 1559

Query: 1627 ---------------------------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1659
                                       ++P Y PTSPS   TSP +SP SPSY P+SP Y
Sbjct: 1560 HANWSPSSPLHISDRDTDYPSSPCQFGSTPGYGPTSPSLG-TSPGFSPISPSYLPSSPDY 1618

Query: 1660 SPTSPAYSPTSPGYSPTSPSYSPTSPTY--------SPTSPSYNPQSAKY--------SP 1703
            + TSP  +P S GYSP S S+SP S  Y        SP SP+Y+P+S  Y          
Sbjct: 1619 AATSPMVTP-SAGYSPKSLSHSPMSLVYYNPSSSGCSPISPNYSPRSPSYSPLSPAYSPS 1677

Query: 1704 SLAYSPSSPRLSPASP---------------YSPTSPNYSPTSSSYSPTSPSYSPSSPTY 1748
            S +Y+P SP  +  SP               Y+PTSPNYSPTS  YSPTSP Y P+SP Y
Sbjct: 1678 SPSYNPLSPSCNLTSPSYDPASPSYSPTSPSYNPTSPNYSPTSPIYSPTSPGYEPTSPRY 1737

Query: 1749 SPSSPYNAG-----------GGNPD----------------------------------Y 1763
             P+SP   G           G NPD                                  Y
Sbjct: 1738 VPTSPGYLGTPYTPSCQVYSGNNPDRCSTTQGDVSRPTSPIYSPSSPCYSPSYGGTSLRY 1797

Query: 1764 SPSSPQYSPSAGYS--PSAPGYSPSS 1787
             P+SP YSPSAG +  P+   Y+ SS
Sbjct: 1798 CPTSPVYSPSAGATGRPATVSYTASS 1823



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/209 (38%), Positives = 110/209 (52%), Gaps = 31/209 (14%)

Query: 1591 PTSP-SYSPTSPSYSPTSPAYSP--TSPAYSP---TSPAYSPTSPSYSPT--SPSYSPTS 1642
            P  P S S  S   S  SPA S    +PAY+     +P  +PTS  ++P+  S  +SP  
Sbjct: 1500 PACPLSASTRSLWLSGNSPAASRAMVTPAYASERSCTPNITPTSAVFTPSGISEGFSPYG 1559

Query: 1643 -PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY 1701
              ++SP+SP +     +  P+SP    ++PGY PTSPS   TSP +SP SPSY P S  Y
Sbjct: 1560 HANWSPSSPLHISDRDTDYPSSPCQFGSTPGYGPTSPSLG-TSPGFSPISPSYLPSSPDY 1618

Query: 1702 SPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNP 1761
            + +      SP ++P++ YSP S ++SP S  Y      Y+PSS   SP SP        
Sbjct: 1619 AAT------SPMVTPSAGYSPKSLSHSPMSLVY------YNPSSSGCSPISP-------- 1658

Query: 1762 DYSPSSPQYSPSAGYSPSA-PGYSPSSTS 1789
            +YSP SP YSP +     + P Y+P S S
Sbjct: 1659 NYSPRSPSYSPLSPAYSPSSPSYNPLSPS 1687


>gi|345487216|ref|XP_003425653.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1 [Nasonia vitripennis]
          Length = 1907

 Score = 1761 bits (4560), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 900/1637 (54%), Positives = 1136/1637 (69%), Gaps = 114/1637 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAMIRTVKRVQFGILSPDEIRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA- 124
            C+TC  NM ECPGHFGH++LAKP+FH GF+   + I+R VCF CSK+L    + K K+  
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHCGFITKTIKILRCVCFYCSKMLVSPHNPKIKEII 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDV--PGQDGEEPLKKNKGGCGAQQPKLTIE 181
            +K +  P+ RL  + D CK+K  CEGGDE+D+   GQ+ +   K   GGCG  QP L   
Sbjct: 126  MKTKGQPRKRLTFVYDLCKSKNICEGGDEMDITKEGQEQDPNKKPGHGGCGRYQPNLRRS 185

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ + AE+K     N+D +      E+K  LTAER   +LK I+DE+  +LG++PK+ARP
Sbjct: 186  GLDVTAEWK---HVNEDSQ------EKKIALTAERAWEILKHITDEESFILGMDPKFARP 236

Query: 242  DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            DWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  L R E+ GA  H+ISE
Sbjct: 237  DWMIVTVLPVPPLAVRPAVVMYGSAKNQDDLTHKLSDIIKSNNELLRNEQAGAATHVISE 296

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              ++LQFH+AT  DN++PG P+A Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 297  NIKMLQFHVATLVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 356

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ELV  G    PG   AKYI+RD
Sbjct: 357  VITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNTRYPG---AKYIVRD 413

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 414  NGDRIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 473

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 474  RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTL 533

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
               RK+TKRD FIEK+  MNILM+   +DGK+PQP ILKP+PLWTGKQ+F+LIIP  +N+
Sbjct: 534  TAVRKMTKRDVFIEKEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVNM 593

Query: 592  FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E+G 
Sbjct: 594  IRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGH 653

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I  +I KAK +V  +I +A +
Sbjct: 654  EVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYMEIQSSIRKAKEDVIEVITKAHN 713

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 714  MELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 773

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 774  QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 833

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E
Sbjct: 834  GREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVE 893

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
             Q L ++K+    F+K F+F+   E +      ++ + ++    E+    + E ++L  D
Sbjct: 894  FQNLPTIKLSNKAFEKKFKFDPSNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKD 953

Query: 948  RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1007
            R  L  EI  SG+S   LP NL+R+IWN QK F ++ R P+D+ PM V++ V  L ER  
Sbjct: 954  RTAL-REIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIKGVKDLLERCI 1012

Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            +V GED LS +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+  
Sbjct: 1013 IVAGEDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQC 1072

Query: 1068 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1127
            +PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+V
Sbjct: 1073 SPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 1132

Query: 1128 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1187
            FL        E+AKNV C LE+TTL+ VT  T ++YDPDP  T+I ED EFV  YYEMPD
Sbjct: 1133 FLTGAAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPD 1192

Query: 1188 EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1247
             D  P KISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LRI
Sbjct: 1193 FD--PTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRI 1250

Query: 1248 RIMNDEAPK------GELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            RIMN E  K       E + +  EDD+FL+ IE+NML++M L+G+               
Sbjct: 1251 RIMNSEDNKFTDTQEVEESVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDA 1310

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     +L+ V+   DVD  RT SN + EI +VLGIEAVR+
Sbjct: 1311 KKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1370

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1371 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQL---PSYM- 1437
            D+LLDAA  AE D +RGV+ENI++GQL  IGTG   L L+ E  K  IE+ +    + M 
Sbjct: 1431 DVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKQGIEIPMGVGANIMG 1490

Query: 1438 -EGLEFG--MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS 1494
              G+ FG  +TP+ SP   TP+     +PGY  +    +SP   +  +P  GG  FSP+ 
Sbjct: 1491 GTGMFFGNAVTPSMSP-QMTPWLGVGATPGYGAAG---MSPSLGSGMTP--GGPCFSPSG 1544

Query: 1495 SPGYSPSSPGYS-------------------PSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1535
                S  SP YS                   P SP     SP YSPTSP Y PTSP  +P
Sbjct: 1545 QSDASGMSPAYSAYSPQPGSPGSPGPSMSPYPMSPA-GGASPSYSPTSPAYLPTSPSMTP 1603

Query: 1536 TSPTYSPSSPGYSPTSP 1552
            +SP YSP+SP YSPTSP
Sbjct: 1604 SSPNYSPTSPTYSPTSP 1620



 Score = 79.7 bits (195), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/118 (66%), Positives = 91/118 (77%), Gaps = 1/118 (0%)

Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1669
            ++ TSP Y+P SP YSPTSP+YSPTSPSYSP+SP +S  S  YSP+SP+YSPTSP YSPT
Sbjct: 1790 FAGTSPQYTPVSPTYSPTSPTYSPTSPSYSPSSPQHSGGSTKYSPSSPNYSPTSPTYSPT 1849

Query: 1670 SPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSL-AYSPSSPRLSPASPYSPTSPN 1726
            S  YSPTSP+YSPTS +YSPTSPSY+P S  YSP +  YSP+SP  S ASP   T  N
Sbjct: 1850 STKYSPTSPTYSPTSHSYSPTSPSYSPTSPAYSPQVPGYSPTSPTYSAASPTYETDDN 1907


>gi|380029407|ref|XP_003698365.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Apis florea]
          Length = 1893

 Score = 1760 bits (4559), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 896/1636 (54%), Positives = 1138/1636 (69%), Gaps = 115/1636 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV    I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L    + K K+  
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPKIKEIV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK---GGCGAQQPKLTI 180
            +K +  P+ RL  + D CK+K  CEGGDE+D+  ++ E+   + K   GGCG  QP L  
Sbjct: 126  MKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQEQQSIERKPGHGGCGRYQPNLRR 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ + AE+      N+D +      E+K  LTAER   +LK I+DE+  +LG++PK+AR
Sbjct: 186  SGLDVTAEWT---HVNEDSQ------EKKMALTAERAWEILKHITDEESFILGMDPKFAR 236

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWM++ VLP+PP  VRP+          DDLTH+LA II+ N  L R E+ GA AH+IS
Sbjct: 237  PDWMVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVIS 296

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 297  ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ELV  G    PG   AKYI+R
Sbjct: 357  TVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPG---AKYIVR 413

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  K SD HL+ GY+VERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 414  DNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWST 473

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+H PQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 474  FRMNLSCTSPYNADFDGDEMNLHAPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDT 533

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD FIEK+  MNILM+   +DGK+PQP ILKP+PLWTGKQ+F+LIIP  +N
Sbjct: 534  LTAVRKMTKRDVFIEKEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVN 593

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E+G
Sbjct: 594  MIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELG 653

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A 
Sbjct: 654  HEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 713

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 714  NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 773

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETV 893

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E Q L ++K+    F+K F+F+   E +      ++ + ++    E+    + E ++L  
Sbjct: 894  EFQNLPTIKLSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNK 953

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L  EI  SG+S   LP NL+R+IWN QK F ++ R P+D+ PM+V++ V  L ++ 
Sbjct: 954  DRAVL-REIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMKVIQGVKDLLDKC 1012

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +V G+D LS +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+ 
Sbjct: 1013 IIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQ 1072

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
            V+PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+
Sbjct: 1073 VSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 1132

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMP
Sbjct: 1133 VFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMP 1192

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D  P KISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LR
Sbjct: 1193 DFD--PNKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLR 1250

Query: 1247 IRIMNDEAPKGELNDESA----EDDVFLKKIESNMLTEMALRGV---------------- 1286
            IRIMN +  K + ++E      EDD+FL+ IE+NML++M L+G+                
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAK 1310

Query: 1287 ------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                    +L+ V+   DVD  RT SN + EI +VLGIEAVR++
Sbjct: 1311 KRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1370

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            +  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD
Sbjct: 1371 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1430

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM----- 1437
            +LLDAA  AE D +RGV+ENI++GQL  IGTG   L L+ E  K  IE+ +         
Sbjct: 1431 VLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKVGIEIPMAVGAGVMGT 1490

Query: 1438 EGLEFG--MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSS 1495
             G+ FG   TP+ SP   TP+     +PGY  S    +SP   +  +P  GG  FSP+ +
Sbjct: 1491 AGMFFGSVATPSMSP-QMTPWMGA--TPGYGAS---SMSPALGSGMTP--GGACFSPSGA 1542

Query: 1496 PGYSPSSPGYS-------------------PSSPGYSPTSPGYSPTSPGYSPTSPGYSPT 1536
               S  SP YS                   P SP     SP YSPTSP Y PTSP  +P+
Sbjct: 1543 SDASGLSPAYSAYSPQPGSPGSPGPSMSPYPMSPA-GGASPSYSPTSPAYLPTSPSITPS 1601

Query: 1537 SPTYSPSSPGYSPTSP 1552
            SP YSP+SP YSPTSP
Sbjct: 1602 SPNYSPTSPTYSPTSP 1617



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 94/114 (82%), Gaps = 1/114 (0%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT-SPSYSPTSPSYSPTSPSYSP 1647
            ++ TSP Y+P SP+YSPTSP YSPTSP+YSP+SP ++ + S  YSP+SP+YSPTSP+YSP
Sbjct: 1776 FAGTSPQYTPASPTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSP 1835

Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY 1701
            TSP YSP+S  YSPTSP Y+PTSP YSPTSP+YSP  P YSPTSP+Y+P S  Y
Sbjct: 1836 TSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAY 1889



 Score =  107 bits (267), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/121 (66%), Positives = 97/121 (80%), Gaps = 8/121 (6%)

Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPTSPAYSP 1619
            ++ TSP Y+P SP+YSPTSP+YSPTSPSYSP+SP ++ + S  YSP+SP YSPTSP YSP
Sbjct: 1776 FAGTSPQYTPASPTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSP 1835

Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
            TSP YSP+S   +     YSPTSP+Y+PTSPSYSPTSP+YSP  P YSPTSP YSP SP+
Sbjct: 1836 TSPQYSPSS---TK----YSPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPA 1888

Query: 1680 Y 1680
            Y
Sbjct: 1889 Y 1889



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/117 (65%), Positives = 96/117 (82%), Gaps = 7/117 (5%)

Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT-SPAYSPTSPSYSPTSPSYSP 1640
            ++ TSP Y+P SP+YSPTSP+YSPTSP+YSP+SP ++ + S  YSP+SP+YSPTSP+YSP
Sbjct: 1776 FAGTSPQYTPASPTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSP 1835

Query: 1641 TSPSYSPTSPSYSP---TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSY 1694
            TSP YSP+S   +    TSP+Y+PTSP+YSPTSP YSP  P YSPTSPTYSP SP+Y
Sbjct: 1836 TSPQYSPSS---TKYSPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAY 1889



 Score = 97.8 bits (242), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 79/133 (59%), Positives = 95/133 (71%), Gaps = 20/133 (15%)

Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSP 1661
            ++ TSP Y+P SP YSPTSP YSPTSPSYSP+SP ++ + S  YSP+SP+YSPTSP+YSP
Sbjct: 1776 FAGTSPQYTPASPTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSP 1835

Query: 1662 TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS 1721
            TSP YSP+S  YSPTSP+Y+PTSP+YSPTSP+Y             SP  P       YS
Sbjct: 1836 TSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTY-------------SPPVP------GYS 1876

Query: 1722 PTSPNYSPTSSSY 1734
            PTSP YSP S +Y
Sbjct: 1877 PTSPTYSPASPAY 1889



 Score = 87.8 bits (216), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 73/122 (59%), Positives = 91/122 (74%), Gaps = 12/122 (9%)

Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY--SPSLAYSPSSPRLSPASP-YSP 1722
            ++ TSP Y+P SP+YSPTSPTYSPTSPSY+P S ++  S S  YSPSSP  SP SP YSP
Sbjct: 1776 FAGTSPQYTPASPTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSP 1835

Query: 1723 TSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAP 1781
            TSP YSP+S+ YSPTSP+Y+P+SP+YSP+S        P YSP  P YSP++  YSP++P
Sbjct: 1836 TSPQYSPSSTKYSPTSPTYTPTSPSYSPTS--------PTYSPPVPGYSPTSPTYSPASP 1887

Query: 1782 GY 1783
             Y
Sbjct: 1888 AY 1889


>gi|383857287|ref|XP_003704136.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Megachile rotundata]
          Length = 1904

 Score = 1760 bits (4559), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 899/1636 (54%), Positives = 1137/1636 (69%), Gaps = 115/1636 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV    I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L    + K K+  
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVGPHNPKIKEIV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDV--PGQDGEEPLKK-NKGGCGAQQPKLTI 180
            +K +  P+ RL  + D CK+K  CEGGDE+D+    QD +   +K   GGCG  QP L  
Sbjct: 126  MKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQDQQNTDRKPGHGGCGRYQPNLQR 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ + AE+K     N+D +      E+K  LTAER   +LK I+DE+  +LG++PK+AR
Sbjct: 186  SGLDVTAEWK---HVNEDSQ------EKKIALTAERAWEILKHITDEESFILGMDPKFAR 236

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWM++ VLP+PP  VRP+          DDLTH+LA II+ N  L R E+ GA AH+IS
Sbjct: 237  PDWMVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVIS 296

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 297  ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ELV  G    PG   AKYI+R
Sbjct: 357  TVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPG---AKYIVR 413

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  K SD HL+ GY+VERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 414  DNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWST 473

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 474  FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDT 533

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD FIEK+  MNILM+   +DGK+PQP ILKP+PLWTGKQ+F+LIIP  +N
Sbjct: 534  LTAVRKMTKRDVFIEKEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVN 593

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E+G
Sbjct: 594  MIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELG 653

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A 
Sbjct: 654  HEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 713

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 714  NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 773

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETV 893

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E Q L ++K+    F+K F+F+   E +      ++ + ++    E+    + E ++L  
Sbjct: 894  EFQNLPTIKLSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNK 953

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L  EI  SG+S   LP NL+R+IWN QK F ++ R P+D+ PM V++ V  L ++ 
Sbjct: 954  DRAIL-REIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLDKC 1012

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +V G+D LS +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+ 
Sbjct: 1013 IIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQ 1072

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
            V+PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+
Sbjct: 1073 VSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 1132

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMP
Sbjct: 1133 VFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMP 1192

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D  P KISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LR
Sbjct: 1193 DFD--PTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLR 1250

Query: 1247 IRIMNDEAPKGELNDESA----EDDVFLKKIESNMLTEMALRGV---------------- 1286
            IRIMN +  K +  +E      EDD+FL+ IE+NML++M L+G+                
Sbjct: 1251 IRIMNSDDNKFQDTEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSK 1310

Query: 1287 ------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                    +L+ V+   DVD  RT SN + EI +VLGIEAVR++
Sbjct: 1311 KRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1370

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            +  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD
Sbjct: 1371 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1430

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM----- 1437
            +LLDAA  AE D +RGV+ENI++GQL  IGTG   L L+ E  K  IE+ +         
Sbjct: 1431 VLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGT 1490

Query: 1438 EGLEFG--MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSS 1495
             G+ FG   TP+ SP   TP+     +PGY  S    +SP   +  +P  GG  FSP+ +
Sbjct: 1491 AGMFFGSVATPSMSP-QMTPWMGA--TPGYGAS---SMSPALGSGMTP--GGACFSPSGA 1542

Query: 1496 PGYSPSSPGYS-------------------PSSPGYSPTSPGYSPTSPGYSPTSPGYSPT 1536
               S  SP YS                   P SP     SP YSPTSP Y PTSP  +P+
Sbjct: 1543 SDASGLSPAYSAYSPQPGSPGSPGPSMSPYPMSPA-GGASPSYSPTSPAYLPTSPSITPS 1601

Query: 1537 SPTYSPSSPGYSPTSP 1552
            SP YSP+SP YSPTSP
Sbjct: 1602 SPNYSPTSPTYSPTSP 1617


>gi|390462987|ref|XP_003732945.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
            [Callithrix jacchus]
          Length = 1899

 Score = 1758 bits (4554), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 886/1565 (56%), Positives = 1117/1565 (71%), Gaps = 100/1565 (6%)

Query: 31   MSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKP 88
            MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  NM ECPGHFGH+ELAKP
Sbjct: 1    MSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKP 60

Query: 89   MFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NPKNRLKKILDACKNKTK 146
            +FH+GF+   + ++R VCF CSK+L D ++ K K  L      PK RL  + D CK K  
Sbjct: 61   VFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNI 120

Query: 147  CEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
            CEGG+E+D    V   +G+E L K KG  GCG  QP++   G+++ AE+K     N+D +
Sbjct: 121  CEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWK---HVNEDSQ 177

Query: 201  QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS- 259
                  E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WMI+ VLP+PP  VRP+ 
Sbjct: 178  ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAV 231

Query: 260  ---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPG 310
                     DDLTH+LA I++ N  LRR E+NGA AH+I+E  +LLQFH+AT  DNELPG
Sbjct: 232  VMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPG 291

Query: 311  QPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSI 370
             PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVITPDP ++IDQ+GVP SI
Sbjct: 292  LPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSI 351

Query: 371  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 430
            A N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G R+DLR+  K SD HL+
Sbjct: 352  AANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGDRIDLRFHPKPSDLHLQ 408

Query: 431  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 490
             GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLNLSVT+PYNADFDGDEM
Sbjct: 409  TGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEM 468

Query: 491  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
            N+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   RK TKRD F+E+   M
Sbjct: 469  NLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVM 528

Query: 551  NILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKG---IL 606
            N+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT + H D+ D G    +
Sbjct: 529  NLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHI 588

Query: 607  TAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 666
            + GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  R F  + Q ++N WLL
Sbjct: 589  SPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLL 648

Query: 667  QNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKV 726
                +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  LEP PG T+ ++FEN+V
Sbjct: 649  IEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQV 708

Query: 727  NQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 786
            N++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ A VGQQNVEGKRIPFG
Sbjct: 709  NRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFG 768

Query: 787  FVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 846
            F  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQ
Sbjct: 769  FKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQ 828

Query: 847  RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFR 906
            RRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q L +LK     F+K FR
Sbjct: 829  RRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFR 888

Query: 907  FEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLP 966
            F+   E      + ++ + D+ +   +++  + E +++  DR  L   I  +GDS   LP
Sbjct: 889  FDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRV-IFPTGDSKVVLP 947

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
             NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V G+DPLS +AQ+NATL 
Sbjct: 948  CNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLL 1007

Query: 1027 FNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1086
            FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PGEM+G +AAQS+GEPAT
Sbjct: 1008 FNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPAT 1067

Query: 1087 QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCA 1146
            QMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL        ERAK++ C 
Sbjct: 1068 QMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCR 1127

Query: 1147 LEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNR 1206
            LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+A  +ISPWLLR+EL+R
Sbjct: 1128 LEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVA--RISPWLLRVELDR 1185

Query: 1207 EMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDE---S 1263
            + M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIMN +  K +  +E    
Sbjct: 1186 KHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDK 1245

Query: 1264 AEDDVFLKKIESNMLTEMALR--------------------------------------- 1284
             +DDVFL+ IESNMLT+M L+                                       
Sbjct: 1246 MDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILET 1305

Query: 1285 -GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
             GV+L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL  VISFDGSYVNYRHL
Sbjct: 1306 DGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHL 1365

Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
            A+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++AA   ESD ++GV+ENI
Sbjct: 1366 ALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENI 1425

Query: 1404 MLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYMEGLEFGMTPARSPVSGTPYHDGM- 1460
            MLGQLAP GTG   L L+ E  K  +E+   +P        GMTP  +  S +   D   
Sbjct: 1426 MLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGRSGMTPGAAGFSPSAASDASG 1485

Query: 1461 MSPGY----LFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTS 1516
             SPGY      +P    SP   + + P  GG       SP YSP+SP Y P SPG     
Sbjct: 1486 FSPGYSPAWSPTPGSPGSPGPSSPYIPSPGG-----AMSPSYSPTSPAYEPRSPG----- 1535

Query: 1517 PGYSP 1521
             GY+P
Sbjct: 1536 -GYTP 1539



 Score =  178 bits (451), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1782 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1841

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1842 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1892



 Score =  177 bits (448), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1782 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1841

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1842 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1892



 Score =  176 bits (447), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1782 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1841

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1842 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1892



 Score =  176 bits (445), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1782 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1841

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1842 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1892



 Score =  164 bits (416), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1782 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1840

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1841 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1892



 Score =  162 bits (410), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1782 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1841

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1842 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1892



 Score =  140 bits (353), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1782 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1829

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1830 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1874

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1875 GYSPTSPTYS 1884


>gi|391332786|ref|XP_003740810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Metaseiulus occidentalis]
          Length = 1851

 Score = 1758 bits (4552), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 909/1644 (55%), Positives = 1162/1644 (70%), Gaps = 113/1644 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +VR VQFGIL PDEIR+MSV +  I + E  E  +PK GGL DPR G IDR  +
Sbjct: 9    SKAILREVREVQFGILDPDEIRRMSVTEGGIRYAEIYEGNRPKLGGLMDPRQGVIDRTSR 68

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C TC+ NM ECPGHFGHLELAKP+FH+GF+   L ++R VC+ CS++L   +  + ++ L
Sbjct: 69   CLTCSGNMTECPGHFGHLELAKPVFHVGFLTKTLKVLRCVCYYCSRLLVSPNHPRMREIL 128

Query: 126  ---KIRNPKNRLKKILDACKNKTKCEGGDEIDV-PGQDGEEPLKKNKGGCGAQQPKLTIE 181
               K    + RL K+ + CK K+ CE  D  D   G+  EE  K    GCG  QP     
Sbjct: 129  SKTKTTQRQQRLDKVYEICKTKSMCEESDTSDKGQGEPTEEERKMMHVGCGRYQPNYRRS 188

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ + AE+K   ++N          E+KQ LTAERV  + K IS+E+C  LG++ +YA+P
Sbjct: 189  GLDISAEWKHTNEENQ---------EKKQVLTAERVYEIFKHISEEECFCLGMDERYAKP 239

Query: 242  DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
             WM+L VL +PP  VRP+          DDLTH+L+ I++ N  L R E++GA  HI++E
Sbjct: 240  SWMVLTVLAVPPLCVRPAVVMFGSARNQDDLTHKLSDIVKANNELIRNEQSGAAPHILAE 299

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              ++LQFH+AT +DNELPG PRA Q+SGRP+KSI  RLKAKEGRIRGNLMGKRVDFSART
Sbjct: 300  NVKMLQFHVATLYDNELPGLPRAMQKSGRPLKSIKQRLKAKEGRIRGNLMGKRVDFSART 359

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VITPDP + I+++GVP SIA NLT+PE VTP+NIER++ELV  G +  PG   AKYI+R+
Sbjct: 360  VITPDPNLKINEVGVPRSIAQNLTFPEIVTPFNIERMQELVSRGNNQYPG---AKYIVRE 416

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G+R+DLR+  K+SD HL+ GY+VERH+ +GD ++FNRQP+LHKMS+MGH+I+++P+STF
Sbjct: 417  NGERIDLRFHPKASDLHLQCGYRVERHVQNGDIIVFNRQPTLHKMSMMGHKIRVLPWSTF 476

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            R+NLSVT+PYNADFDGDEMNMHVPQS ETRAE+ +L MVP+ I++PQ+N+PVMGIVQDTL
Sbjct: 477  RMNLSVTTPYNADFDGDEMNMHVPQSLETRAEIEQLAMVPRQIITPQANKPVMGIVQDTL 536

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
               RK+TKRD ++EKD  MN+LM+   ++GKVP P ILKP+PLWT KQ+F+LIIP  +NL
Sbjct: 537  TAVRKMTKRDVYLEKDQMMNLLMFLPIWNGKVPIPAILKPKPLWTAKQLFSLIIPGNVNL 596

Query: 592  FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             RT + H D  D G    ++ GDT V IE G+LLSG +CKKT+G S GSL+HV++ E+G 
Sbjct: 597  IRTHSTHPDEEDDGPYKWISPGDTKVIIEHGQLLSGIVCKKTVGASAGSLMHVLFVEMGH 656

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            + A  F  H Q +VN WLL    SIGIGDTIAD +T   I +TI KAK +V  +I++A +
Sbjct: 657  EVAGAFYSHLQTVVNAWLLYEGHSIGIGDTIADQQTYMDIQNTIKKAKQDVIEVIEKAHN 716

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LEP PG T+ ++FEN+VN++LN ARD+ G SAQKSLSE NN K+MV +G+KGS INIS
Sbjct: 717  DELEPTPGNTLRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKSMVVSGAKGSKINIS 776

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDD+GPESRGFVENSYL GLTP EFFFHAMG
Sbjct: 777  QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYLAGLTPSEFFFHAMG 836

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRL+KAME +M+ YDGTVRNS G VIQF YGEDG+D   +E
Sbjct: 837  GREGLIDTAVKTAETGYIQRRLIKAMESVMICYDGTVRNSNGQVIQFRYGEDGLDGCCVE 896

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
            +Q L ++K    +F++ FRF++  E        ++ + +L +        + E   L+ D
Sbjct: 897  TQYLATIKPSDRQFEQKFRFDVANEKLLRKVYTEDVVKELNSSASAVAEMEREWDCLKKD 956

Query: 948  RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1007
            R ++   +  +G SS  LP NL R++WNAQKTF+V+ R  +D+ P+ V+E V+ L ++L 
Sbjct: 957  R-EILRNVFPTGTSSVVLPCNLSRMVWNAQKTFRVNSRGKTDLSPLRVIEGVESLVKKLI 1015

Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            +VPG+D LS++A +NATL F  LLRST  S+RV +E RL+ EAF+W++GEIE+RF QS  
Sbjct: 1016 IVPGDDHLSIQANENATLLFRALLRSTLCSRRVGQEFRLSTEAFDWLLGEIEARFHQSQG 1075

Query: 1068 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1127
             PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN++K+ KTPSL+V
Sbjct: 1076 QPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKQPKTPSLTV 1135

Query: 1128 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1187
            FLK       E+AK+V C LE+TTLR VT  T ++YDPDP  T+I ED +FV  YYEMPD
Sbjct: 1136 FLKGASARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQDFVNVYYEMPD 1195

Query: 1188 EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1247
             D  P KISPWLLR+EL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNADKL+LRI
Sbjct: 1196 FD--PTKISPWLLRVELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRI 1253

Query: 1248 RIMNDEAPK----GELNDESAEDDVFLKKIESNMLTEMALRGV----------------- 1286
            RIMN++  K     E   +  EDDVFL+ IESNML++M L+G+                 
Sbjct: 1254 RIMNNDGDKFADGAEEQADKMEDDVFLRCIESNMLSDMTLQGIEAISKVYMHLPTTDDKK 1313

Query: 1287 -----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
                                   +L+ V+   DVD  RT SN +IE+  VLGIEAVR+A+
Sbjct: 1314 RIVVTETGEFKAISEWLLETDGTSLMRVLSERDVDPVRTYSNDIIEVFSVLGIEAVRKAV 1373

Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
              E+  VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVDI
Sbjct: 1374 EKEMNHVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDI 1433

Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLE-- 1441
            L+DAA  AE+D L+GV+ENI+LG+LA +GTG   L L+ E  +  IE+ +   M G+E  
Sbjct: 1434 LMDAAFHAEADKLKGVSENIILGKLARMGTGAFDLMLDAEKCRLGIEVSMA--MPGMEGM 1491

Query: 1442 ------FGMTPARSPVSG-----TPYHDGMMSPGY-LFSPNLRLSPVTDAQFSPYVGG-M 1488
                  FG   A +P++G     TP++ G  +P Y ++SP   ++P   A FSP     +
Sbjct: 1492 PGQGVFFG--SAATPMAGMSPQMTPWNAG-QTPAYGMWSPTSNMTPGA-AGFSPSAQSEV 1547

Query: 1489 AFSPTSSPGYSPS-SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGY-SPTSPTYSP--SS 1544
             FSP  SP YSP+ SPG SPSSP Y      YSP   G   TSP +   TSP+YSP  +S
Sbjct: 1548 GFSPAYSPAYSPAQSPG-SPSSPAY------YSPLHVG--GTSPLHVGGTSPSYSPQITS 1598

Query: 1545 PGYSPTSPAYSPTSPSYSPTSPSY 1568
            P YSP+SP+Y+  SPSYSPTSP Y
Sbjct: 1599 PSYSPSSPSYNLASPSYSPTSPQY 1622



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/127 (48%), Positives = 78/127 (61%), Gaps = 17/127 (13%)

Query: 1537 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPS 1595
            SP  +P + G +P    +SPTS + +P +  +SP++ S    SP+YSP  SP+ SP SPS
Sbjct: 1509 SPQMTPWNAGQTPAYGMWSPTS-NMTPGAAGFSPSAQSEVGFSPAYSPAYSPAQSPGSPS 1567

Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPAY-SPTSPSYSP--TSPSYSPTSPSYSPTSPSY 1652
                SP+Y      YSP       TSP +   TSPSYSP  TSPSYSP+SPSY+  SPSY
Sbjct: 1568 ----SPAY------YSPLH--VGGTSPLHVGGTSPSYSPQITSPSYSPSSPSYNLASPSY 1615

Query: 1653 SPTSPSY 1659
            SPTSP Y
Sbjct: 1616 SPTSPQY 1622



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 58/119 (48%), Positives = 75/119 (63%), Gaps = 15/119 (12%)

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT-SPSYSPTSPS 1637
            SP  +P +   +P    +SPTS + +P +  +SP++ +    SPAYSP  SP+ SP SPS
Sbjct: 1509 SPQMTPWNAGQTPAYGMWSPTS-NMTPGAAGFSPSAQSEVGFSPAYSPAYSPAQSPGSPS 1567

Query: 1638 YSPTSPS-YSP-----TSPSY-SPTSPSYSP--TSPAYSPTSPGYSPTSPSYSPTSPTY 1687
                SP+ YSP     TSP +   TSPSYSP  TSP+YSP+SP Y+  SPSYSPTSP Y
Sbjct: 1568 ----SPAYYSPLHVGGTSPLHVGGTSPSYSPQITSPSYSPSSPSYNLASPSYSPTSPQY 1622


>gi|390603892|gb|EIN13283.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
            [Punctularia strigosozonata HHB-11173 SS5]
          Length = 1729

 Score = 1757 bits (4551), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 943/1743 (54%), Positives = 1194/1743 (68%), Gaps = 113/1743 (6%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLGTID 61
            +F YS A + +V  VQFGILSP+EI+  SV +IE  E  +    KPK GGL DPR+GTID
Sbjct: 5    QFAYSAAPIKRVAEVQFGILSPEEIKAYSVAKIEFPEVMDETTHKPKMGGLMDPRMGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R  KC+TC   M+ECPGHFGH+ELA+P+FH GF+  V  I+  +C NC K+ AD  D  F
Sbjct: 65   RNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADTSDPNF 124

Query: 122  KQALK-IRNPKNRLKKILDACKNKTKCEGGD-EIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
               ++ +R+PK R+  +   CK K  CE  D + +  GQDGEEP+KK  GGCG  QP + 
Sbjct: 125  ADKIRHVRDPKKRMAVVWGHCKGKMVCEADDPKEEGDGQDGEEPVKKGHGGCGHHQPLIR 184

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
             EG+K+  +YK   K  DD E L      K+      V    K+++D D  LLGL+ +YA
Sbjct: 185  KEGLKLFVQYK---KSKDDDEDLKAHQPDKRLFLPSEVYTTFKKMTDSDLHLLGLSDEYA 241

Query: 240  RPDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            RP+WMIL V           + +    +R  DDLT++L  II+ + N+R+ E+ G PAH+
Sbjct: 242  RPEWMILTVLPVPPPPVRPSIAVDGGTMRSEDDLTYKLGDIIKASANVRKHEQEGVPAHV 301

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
              E+ QLLQFH+ATY DN++ G P+A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFS
Sbjct: 302  TMEYEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFS 361

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVIT DP + +D++GVP SIA+ LTYPE VTPYNI  L+ELV  GP   PG   A+Y+
Sbjct: 362  ARTVITGDPNLMLDEVGVPRSIAMTLTYPERVTPYNIAYLQELVRNGPTAYPG---ARYV 418

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            +RD G+R+DLRY  K +D  L+ G+ VERHL DGD+VLFNRQPSLHKMS+M HR+K+MPY
Sbjct: 419  VRDTGERIDLRY-NKRADAFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMPY 477

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSVT PYNADFDGDEMNMHVPQS ETRAE+ ++  VP+ I+SPQ+N+PVM IVQ
Sbjct: 478  STFRLNLSVTPPYNADFDGDEMNMHVPQSEETRAELAQIAWVPRQIISPQANKPVMAIVQ 537

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL G RK T RDTF++ +   NIL+W  ++DG VP PTI+KP+P+WTGKQ+ ++ IP+ 
Sbjct: 538  DTLCGIRKFTLRDTFLDWNQVQNILLWVPEWDGTVPIPTIVKPKPMWTGKQILSMCIPRG 597

Query: 589  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            IN+FR+      + K      D  + IE G+++ G + KKT+G++ G LIHV++ E GP+
Sbjct: 598  INIFRSP-----DPKSSSPVFDDGMMIENGDIIFGIVDKKTVGSAQGGLIHVVFREKGPE 652

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
            A R      Q +VNYWL  N FSIGIGDTIAD KT   I+  I+  K  V  + + A   
Sbjct: 653  ATRGLFSGLQQVVNYWLFHNGFSIGIGDTIADDKTTAVISKIIADRKATVSKITQDAYHD 712

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             L+P+PG T+ ESFE+KV + LN ARD++G  AQK L E NN+K MV AGSKGS+INISQ
Sbjct: 713  RLKPQPGMTIRESFESKVERELNLARDDSGQYAQKHLKEDNNVKQMVVAGSKGSYINISQ 772

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            M+ CVGQQ+VEG+RIPFGF  RTLPHFTKDD+ PE+RGFVENSYLRGLTP EFFFHAM G
Sbjct: 773  MSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLRGLTPHEFFFHAMAG 832

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRLVKA+ED+ V YDGTVRNSLGD+IQF+YGEDGMD  +IE 
Sbjct: 833  REGLIDTAVKTAETGYIQRRLVKALEDVAVCYDGTVRNSLGDLIQFVYGEDGMDGAFIER 892

Query: 889  QTLDSLKMKKSEFDKAFRFEM-DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
            Q +++  +   +F+  +R ++ D +      +LQ  +DD  +  EL+   D E  +L  D
Sbjct: 893  QNIETFALSDLDFEHQYRVDVTDPQGGFLPGVLQVGLDD--SSLELQAKLDEEFAQLVED 950

Query: 948  RYQLATEIATSGDSSWP--LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
            R  L   I  + D S P  LPVNL+R++ NA + F +D R+PSD+ P  +++AV  L ER
Sbjct: 951  RRLLREFIFPNQDPSRPTYLPVNLQRIVQNAVQIFHIDRRKPSDLEPAYLIDAVRGLVER 1010

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
            L VV G+D  +  AQ+NAT+ F I LR  FA +RVL+   L +EAFEWV+GEIE++F QS
Sbjct: 1011 LVVVRGDDSWAHAAQENATMLFGIHLRGMFACRRVLERFHLNKEAFEWVLGEIETKFNQS 1070

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
            +  PGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA  IKTPSL
Sbjct: 1071 VAHPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSL 1130

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +V+L P +      AKNVQ  L YTTLR+VT A E+WYDPDP  TIIEED  FV+S++ +
Sbjct: 1131 TVYLVPELQKDAMLAKNVQQELAYTTLRTVTAAVEIWYDPDPTSTIIEEDQVFVESFFAI 1190

Query: 1186 PDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
            PDE+I  +    SPWLLR+EL+R  M+D+KL+M+ VA +I + F  DL  I+++DN++KL
Sbjct: 1191 PDEEIESKLHLQSPWLLRLELDRNKMLDRKLTMSYVAGRIAESFKQDLFVIWSEDNSEKL 1250

Query: 1244 ILRIRIMNDEAPKGELNDESA-----EDDVFLKKIESNMLTEMALRGV------------ 1286
            ++R RI+      G   DE       E+D FL+ +E+ ML  ++LRGV            
Sbjct: 1251 VIRCRILG-----GADKDEDGLAGVMEEDEFLRSLENTMLNTVSLRGVKGIERVFMMQHN 1305

Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                       NL  VMC + VD +RT SN+ +EI +VLGIEA 
Sbjct: 1306 KVVTRQDGTISARDENEKEWVLETDGINLKTVMCIDGVDFKRTYSNNCVEIFDVLGIEAA 1365

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R A++ E+R VI FDGSYVNYRHLA+LCD MT RG LMAITRHGINR DTG +MRCSFEE
Sbjct: 1366 RAAIMREMRNVIEFDGSYVNYRHLALLCDLMTQRGTLMAITRHGINRADTGALMRCSFEE 1425

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI-ELQLPS--- 1435
            TV+IL++AA   E D   G+ EN+M GQ+AP+GTG   + L+ +MLK+ I + +LP    
Sbjct: 1426 TVEILMEAAAVGEKDDCHGIAENVMFGQMAPMGTGAFDVALDIDMLKDVIVDHRLPVQNM 1485

Query: 1436 YMEGLEFGMTPARSPVSGTPY--------HDG-MMSPGYLFSPNLRLSPVTD-AQFSPYV 1485
                 +  MTP +  V+ TPY         DG        FSP L ++   D A FS Y+
Sbjct: 1486 LAAQADGAMTPGQ--VAMTPYDSSSPMWSQDGSFKGESAAFSP-LAVNGGEDPANFS-YL 1541

Query: 1486 GGMAFSPTSSPGYSPSS-PGYSPSSPGYSPTSPGYSPTSPGYSPTSP-GYSP--TSPTY- 1540
             G   SP  + G SP++  GYSPSSPGYSPTSP Y P SP    TSP G SP  TSP Y 
Sbjct: 1542 -GFGQSPMGAGGMSPAAGAGYSPSSPGYSPTSP-YIPQSPFAGATSPFGTSPYATSPFYD 1599

Query: 1541 ---SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
               +P+SP YSPTSPA + TSPSYSPTSP YSPTSPS+SPTSP YSP SPS+SPTSP YS
Sbjct: 1600 RGAAPTSPTYSPTSPALNLTSPSYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYS 1659

Query: 1598 PTSPSYSPTSPAYSPTSPA-YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
            PTSPS+SP SP YSPTSPA  SP+SP YS  +   SP+SP YSPTSPSYSP SP+Y    
Sbjct: 1660 PTSPSFSPASPRYSPTSPAQMSPSSPKYS-PTSPASPSSPKYSPTSPSYSPASPAYFSPV 1718

Query: 1657 PSY 1659
            P +
Sbjct: 1719 PVW 1721



 Score =  157 bits (396), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 120/230 (52%), Positives = 150/230 (65%), Gaps = 14/230 (6%)

Query: 1530 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPS 1588
            +PG    +P Y  SSP +S    ++   S ++SP + +      ++S      SP  +  
Sbjct: 1495 TPGQVAMTP-YDSSSPMWSQDG-SFKGESAAFSPLAVNGGEDPANFSYLGFGQSPMGAGG 1552

Query: 1589 YSPTSPS-YSPTSPSYSPTSPAYSPTSPAYSPTSP-AYSP--TSPSY----SPTSPSYSP 1640
             SP + + YSP+SP YSPTSP Y P SP    TSP   SP  TSP Y    +PTSP+YSP
Sbjct: 1553 MSPAAGAGYSPSSPGYSPTSP-YIPQSPFAGATSPFGTSPYATSPFYDRGAAPTSPTYSP 1611

Query: 1641 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAK 1700
            TSP+ + TSPSYSPTSP YSPTSP++SPTSP YSP SPS+SPTSP YSPTSPS++P S +
Sbjct: 1612 TSPALNLTSPSYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPR 1671

Query: 1701 YSPS--LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTY 1748
            YSP+     SPSSP+ SP SP SP+SP YSPTS SYSP SP+Y    P +
Sbjct: 1672 YSPTSPAQMSPSSPKYSPTSPASPSSPKYSPTSPSYSPASPAYFSPVPVW 1721



 Score =  138 bits (348), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/252 (45%), Positives = 147/252 (58%), Gaps = 31/252 (12%)

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPS 1602
            +PG    +P Y  +SP +S    S+   S ++SP + +      ++S      SP  +  
Sbjct: 1495 TPGQVAMTP-YDSSSPMWSQDG-SFKGESAAFSPLAVNGGEDPANFSYLGFGQSPMGAGG 1552

Query: 1603 YSPTSPA-YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
             SP + A YSP+SP YSPTSP Y P SP    TSP    TSP    TSP Y   +   +P
Sbjct: 1553 MSPAAGAGYSPSSPGYSPTSP-YIPQSPFAGATSPF--GTSPY--ATSPFYDRGA---AP 1604

Query: 1662 TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS 1721
            TSP YSPTSP  + TSPSYSPTSP YSPTSPS+             SP+SPR      YS
Sbjct: 1605 TSPTYSPTSPALNLTSPSYSPTSPRYSPTSPSF-------------SPTSPR------YS 1645

Query: 1722 PTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAP 1781
            P SP++SPTS  YSPTSPS+SP+SP YSP+SP      +P YSP+SP    S  YSP++P
Sbjct: 1646 PQSPSFSPTSPRYSPTSPSFSPASPRYSPTSPAQMSPSSPKYSPTSPASPSSPKYSPTSP 1705

Query: 1782 GYSPSSTSQYTP 1793
             YSP+S + ++P
Sbjct: 1706 SYSPASPAYFSP 1717


>gi|67597591|ref|XP_666157.1| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis
            TU502]
 gi|54657094|gb|EAL35927.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
            [Cryptosporidium hominis]
          Length = 1895

 Score = 1756 bits (4549), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 948/1929 (49%), Positives = 1246/1929 (64%), Gaps = 227/1929 (11%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            P+S  E+ +V  ++FG+LSP+ IR+ SV++I+  +  E G+PK GGL+DP LGT D  + 
Sbjct: 10   PFSSKELKRVFSIEFGVLSPELIRKYSVLEIKVSDIYENGRPKSGGLNDPLLGTTDYHIL 69

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            CETC  ++  CPGHF H+EL KPMFHIGF+ TVL ++R VC+ CSK+  D  D KFKQ  
Sbjct: 70   CETCHMDIKTCPGHFAHIELGKPMFHIGFITTVLKLLRCVCYACSKLFVDTLDPKFKQIK 129

Query: 126  KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKM 185
            +IRNP+ RLKKIL+   + ++C           DG         GCG  QP  + EG   
Sbjct: 130  RIRNPRLRLKKILEMRSSSSRCIIS-------SDG--------SGCGFVQPTYSKEG--- 171

Query: 186  IAEYKAQRKKNDDQEQL--PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
               Y     +N D+ ++   E V+ K+ L AE VL + KRIS +D ++LG +P    P W
Sbjct: 172  ---YNLYINQNQDENRIIDDESVDSKRLLAAEEVLTIFKRISHDDMKILGFDPVKCNPSW 228

Query: 244  MILQVLPIPPPPVRP---------SDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
             I  V+PIPPP VRP          DDLT +L  II+ NENL++Q R G+P HIISE + 
Sbjct: 229  FINTVIPIPPPTVRPYVQFGSDRSEDDLTLKLQQIIKLNENLKKQIRIGSPEHIISEMST 288

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            +LQ+H+ T  +N+LPG P++  RS RPIKS+ +RLK K+GRIRGNLMGKRVDFSARTVIT
Sbjct: 289  VLQYHLITLINNDLPGLPQSRTRSNRPIKSLRARLKGKDGRIRGNLMGKRVDFSARTVIT 348

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + +DQ+GVP+SIA+ LTYPE VTPYNIE LKELV+ GPH  PG T    II++DG 
Sbjct: 349  GDPNLAVDQVGVPYSIAMTLTYPEVVTPYNIEELKELVQRGPHEWPGATS---IIQEDGT 405

Query: 415  RLDLRYLKKSSDHH--LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
            ++DLR+   S++ +  L+ G+KVERH+ + D VLFNRQPSLHKMSIMGHR+KI+PYSTFR
Sbjct: 406  KVDLRFSNTSNNSNNMLQYGWKVERHMKNDDLVLFNRQPSLHKMSIMGHRVKILPYSTFR 465

Query: 473  LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
            LNLSVTSPYNADFDGDEMN+H+ QS ETR+E+  LMMVP+ IVSPQ N+PV+GIVQD+LL
Sbjct: 466  LNLSVTSPYNADFDGDEMNLHLAQSHETRSEIKNLMMVPRQIVSPQGNKPVIGIVQDSLL 525

Query: 533  GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII------- 585
            G   +T++ TF+ +D F+ +L+    ++G +P P IL+P+PLWTGKQ+  +++       
Sbjct: 526  GIFLLTRKSTFLTRDKFLQLLLCIPYWNGNIPPPAILRPQPLWTGKQIITVLLAFTTDLG 585

Query: 586  -PKQINLFRTAAWHA-------------DNDKGI-----LTAGDTLVRIEKGELLSGTLC 626
             P ++NL R  +  +             D+ + I     ++  D  V I+KGE + G L 
Sbjct: 586  EPIELNLMRDGSIVSIKQSNNSSNTDKDDSKEAIVNNPWISELDNQVIIQKGEHICGVLT 645

Query: 627  KKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMET 686
            KK  G+S+GSLIH++W E+GP+    FL +TQ +VN WLL++ F++G  D      T+E 
Sbjct: 646  KKIAGSSSGSLIHILWNEIGPEKTGLFLTYTQMVVNTWLLEHGFTVGCQDIQPQNYTLEK 705

Query: 687  INDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSL- 745
            I +++  +K  V+ +I++AQ   L+ +PG++++ESFE +VNQ LN+AR+ +G+ A ++L 
Sbjct: 706  IMNSLEGSKLQVQQIIRRAQKGKLDCQPGKSLIESFEAQVNQELNSARELSGTIATENLD 765

Query: 746  SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESR 805
            S  NN+ AMV  GSKGS INISQ+ ACVGQQNVEGKRIPFGF DR+LPHF K DYGPESR
Sbjct: 766  SSKNNIVAMVQCGSKGSTINISQIMACVGQQNVEGKRIPFGFRDRSLPHFLKYDYGPESR 825

Query: 806  GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVR 865
            GFV NSYL GLTPQE FFHAMGGREG+IDTA KTSETGYIQRRL+KAMED MV+YD TVR
Sbjct: 826  GFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDCMVQYDRTVR 885

Query: 866  NSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNY--MLQEY 923
            NS GD+IQFLYGEDGM   +IE Q ++ L+M+ + F   +R  ++   W  ++  +    
Sbjct: 886  NSNGDIIQFLYGEDGMAGEFIEDQVIELLQMEAAMFQHKYRHNLEHPRWGSSWSGVQPSL 945

Query: 924  IDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVD 983
            I +L+   E +++ ++E ++L  DR QL  +I   G++   LP+N+ R+I  AQ+ F   
Sbjct: 946  IKNLQFDLESQNILNSEYKQLVTDREQLGKDIFPDGETRQHLPININRIIQMAQQKF--- 1002

Query: 984  PRRPSDMH------PMEVVEAVDKLQERL------KVVPGE--------DPLSVEAQKNA 1023
            P+R SD        P+ +++ V+ L ++L       ++  E        D +  E QKNA
Sbjct: 1003 PQRVSDTSSSKDWGPVYIIKKVESLLDKLLLWKNVGIINDEGNKSNFVFDSIIAEVQKNA 1062

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGE 1083
            T    I +RS+ ASK++L+  RL   AFEW++GEIE +F +SL   GEM+G +AAQSIGE
Sbjct: 1063 TTLLGIHIRSSLASKKILEVDRLGPTAFEWILGEIEHQFYRSLAHSGEMVGTIAAQSIGE 1122

Query: 1084 PATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNV 1143
            PATQMTLNTFH+AGV +KNVTLGVPRLRE+INVAK ++TP+L+V+L+ G+ + +E+AK+V
Sbjct: 1123 PATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTVYLESGIANDQEQAKDV 1182

Query: 1144 QCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIE 1203
               LE+TTL+++T    + YDP+   TI+E D  +V  YYE PD+     ++  WLLRI+
Sbjct: 1183 LTLLEHTTLQNITTIAHILYDPEQDKTIVEADKSWVSDYYEFPDDADITNRLGTWLLRIQ 1242

Query: 1204 LNREMMVDKKLSMAAVAEKINQEFD-DDLTCIFNDDNADKLILRIRIMN--------DEA 1254
            LN +++ DKKLSM  + +KI  EF  D+L CI+ DDN+D+L+LR+RI N        D  
Sbjct: 1243 LNNKLVTDKKLSMKEIGDKILMEFSKDELDCIWTDDNSDELVLRLRIKNIEPTNNICDNI 1302

Query: 1255 PKGELND-------ESAEDDVFLKKIESNMLTEMALRGV--------------------- 1286
               E ND          E+  FL+K+ +  L+++ LRG+                     
Sbjct: 1303 HSSEENDSISPSITSGVEEHKFLEKLMTECLSQITLRGINNIKKVYMKEEQVSRYDSISQ 1362

Query: 1287 ---------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
                           NL AV+CH  +D+ RT SN + E+  VLGIEAVRRALL ELR VI
Sbjct: 1363 KMVRDNQWVLDTDGCNLEAVLCHTAIDSTRTISNDITEVFSVLGIEAVRRALLRELRTVI 1422

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
            SFDGSYVNYRHLA+LCD MT +GHLM+ITRHGINR D GP+ +CSFEETV++L+DAA+F 
Sbjct: 1423 SFDGSYVNYRHLALLCDNMTQKGHLMSITRHGINRVDKGPLQKCSFEETVEVLMDAAMFG 1482

Query: 1392 ESDYLRGVTENIMLGQLAPIGTGDCSLYLN-DEMLKNAIELQLPSYMEGLEFGMTPARSP 1450
            E+DYL GV+EN+MLGQLAP GT    + ++ D++   A  L++  + E  + G     S 
Sbjct: 1483 ETDYLNGVSENVMLGQLAPYGTACFDVLIDPDKLRDTATHLEI--HGEFTKIGKFSTLSQ 1540

Query: 1451 VSGTPYHDGMMSPGYLFSPNLRLSPVTDAQ-----FSPYVGGMAFSPTS----SPGYSPS 1501
             + +    G        SP   LSP++         SP + G  FSP      SP  SP 
Sbjct: 1541 TTRSYSDSGAFESDSFESPMSPLSPMSPLYQSYEPMSPMISGQ-FSPVQMTPRSP-MSPV 1598

Query: 1502 SPG-------------------YSPSSPGYSPTSPGY----------------------- 1519
            SPG                   Y+P+SP Y+ +SP Y                       
Sbjct: 1599 SPGGIFSPVPYSPMSPSSPLMDYTPTSPIYAASSPTYNTEVSERARKKYKVNNTLSSYSP 1658

Query: 1520 ----------SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYS 1569
                      S  SP  SPTSP YSPTSP YSP+SP YSPTSP YSPTSP YSPTSP YS
Sbjct: 1659 SSPLNSDNKISNISPDLSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYS 1718

Query: 1570 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP 1629
            PTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP
Sbjct: 1719 PTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSP 1778

Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSP 1689
             YSPTSP YSP+SP YSPTSP YSPTSP+Y+P SP YSPTS  YSPTSP+Y+PTSP YSP
Sbjct: 1779 HYSPTSPHYSPSSPHYSPTSPQYSPTSPNYNPASPNYSPTS-HYSPTSPNYNPTSPNYSP 1837

Query: 1690 TSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSS---P 1746
            +SP+Y   ++                       +SP Y P + +  P SPSYS       
Sbjct: 1838 SSPNYISNNSGSPGYSP----------------SSPQYDPIAVTSVPRSPSYSVGKMVDA 1881

Query: 1747 TYSPSSPYN 1755
             YSPSSP +
Sbjct: 1882 EYSPSSPLD 1890


>gi|66359288|ref|XP_626822.1| DNA-directed RNA polymerase,possible RNA polymerase A/beta'/A''
            subunit, long PHYSPTS repeat at
 gi|46228363|gb|EAK89262.1| putative DNA-directed RNA polymerase,possible RNA polymerase
            A/beta'/A'' subunit, long PHYSPTS repeat at C-terminus
            [Cryptosporidium parvum Iowa II]
          Length = 1902

 Score = 1755 bits (4546), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 945/1915 (49%), Positives = 1241/1915 (64%), Gaps = 217/1915 (11%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            P+S  E+ +V  ++FG+LSP+ IR+ SV++I+  +  E G+PK GGL+DP LGT D  + 
Sbjct: 17   PFSSKELKRVFSIEFGVLSPELIRKYSVLEIKVSDIYENGRPKSGGLNDPLLGTTDYHIL 76

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            CETC  ++  CPGHF H+EL KPMFHIGF+ TVL ++R VC+ CSK+  D  D KFKQ  
Sbjct: 77   CETCHMDIKTCPGHFAHIELGKPMFHIGFITTVLKLLRCVCYACSKLFVDTLDPKFKQIK 136

Query: 126  KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKM 185
            +I+NP+ RLKKIL+   + ++C           DG         GCG  QP  + EG   
Sbjct: 137  RIKNPRLRLKKILEMRSSSSRCIIS-------SDG--------SGCGFVQPTYSKEG--- 178

Query: 186  IAEYKAQRKKNDDQEQL--PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
               Y     +N D+ ++   E V+ K+ L AE VL + KRIS +D ++LG +P    P W
Sbjct: 179  ---YNLYINQNQDENRIIDDESVDSKRLLAAEEVLTIFKRISHDDMKILGFDPVKCNPSW 235

Query: 244  MILQVLPIPPPPVRP---------SDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
             I  V+PIPPP VRP          DDLT +L  II+ NENL++Q R G+P HIISE + 
Sbjct: 236  FINTVIPIPPPAVRPYVQFGSDRSEDDLTLKLQQIIKLNENLKKQIRIGSPEHIISEMST 295

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            +LQ+H+ T  +N+LPG P++  RS RPIKS+ +RLK K+GRIRGNLMGKRVDFSARTVIT
Sbjct: 296  VLQYHLITLINNDLPGLPQSRTRSNRPIKSLRARLKGKDGRIRGNLMGKRVDFSARTVIT 355

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + +DQ+GVP+SIA+ LTYPE VTPYNIE LKELV+ GPH  PG T    II++DG 
Sbjct: 356  GDPNLAVDQVGVPYSIAMTLTYPEVVTPYNIEELKELVQRGPHEWPGATS---IIQEDGT 412

Query: 415  RLDLRYLKKSSDHH--LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
            ++DLR+   S++ +  L+ G+KVERH+ + D VLFNRQPSLHKMSIMGHR+KI+PYSTFR
Sbjct: 413  KVDLRFSNTSNNSNNILQYGWKVERHMKNDDLVLFNRQPSLHKMSIMGHRVKILPYSTFR 472

Query: 473  LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
            LNLSVTSPYNADFDGDEMN+H+ QS ETR+E+  LMMVP+ IVSPQ N+PV+GIVQD+LL
Sbjct: 473  LNLSVTSPYNADFDGDEMNLHLAQSHETRSEIKNLMMVPRQIVSPQGNKPVIGIVQDSLL 532

Query: 533  GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII------- 585
            G   +T++ TF+ +D F+ +L+    ++G +P P IL+P+PLWTGKQ+  +++       
Sbjct: 533  GIFLLTRKSTFLTRDKFLQLLLCIPYWNGNIPPPAILRPQPLWTGKQIITVLLAFTTDLG 592

Query: 586  -PKQINLFRTAAWHA-------------DNDKGI-----LTAGDTLVRIEKGELLSGTLC 626
             P ++NL R  +  +             D+ + I     ++  D  V I+KGE + G L 
Sbjct: 593  EPIELNLMRDGSIVSIKQSNNSSNTDKDDSKEAIVNNPWISELDNQVIIQKGEHICGVLT 652

Query: 627  KKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMET 686
            KK  G+S+GSLIH++W E+GP+    FL +TQ +VN WLL++ F++G  D      T+E 
Sbjct: 653  KKIAGSSSGSLIHILWNEIGPEKTGLFLTYTQMVVNTWLLEHGFTVGCQDIQPQNYTLEK 712

Query: 687  INDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSL- 745
            I +++  +K  V+ +I++AQ   L+ +PG++++ESFE +VNQ LN+AR+ +G+ A ++L 
Sbjct: 713  IMNSLEGSKLQVQQIIRRAQKGKLDCQPGKSLIESFEAQVNQELNSARELSGTIATENLD 772

Query: 746  SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESR 805
            S  NN+ AMV  GSKGS INISQ+ ACVGQQNVEGKRIPFGF DR+LPHF K DYGPESR
Sbjct: 773  SSKNNIVAMVQCGSKGSTINISQIMACVGQQNVEGKRIPFGFRDRSLPHFLKYDYGPESR 832

Query: 806  GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVR 865
            GFV NSYL GLTPQE FFHAMGGREG+IDTA KTSETGYIQRRL+KAMED MV+YD TVR
Sbjct: 833  GFVSNSYLSGLTPQEVFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDCMVQYDRTVR 892

Query: 866  NSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNY--MLQEY 923
            NS GD+IQFLYGEDGM   +IE Q ++ L+M+ + F   +R  ++   W  ++  +    
Sbjct: 893  NSNGDIIQFLYGEDGMAGEFIEDQVIELLQMEAAVFQHKYRHNLEHPRWGSSWAGVQPSL 952

Query: 924  IDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVD 983
            I +L+   E +++ ++E ++L  DR QL  +I   G++   LP+N+ R+I  AQ+ F   
Sbjct: 953  IKNLQFDLESQNILNSEYKQLVTDREQLGKDIFPDGETRQHLPININRIIQMAQQKF--- 1009

Query: 984  PRRPSDMH------PMEVVEAVDKLQERL------KVVPGE--------DPLSVEAQKNA 1023
            P+R SD        P+ +++ V+ L ++L       ++  E        D +  E QKNA
Sbjct: 1010 PQRVSDTSSSKDWGPVYIIKKVESLLDKLLLWKNVGIINDEGNKSNFVFDSIIAEVQKNA 1069

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGE 1083
            T    I +RS+ ASK++L+  RL   AFEW++GEIE +F +SL   GEM+G +AAQSIGE
Sbjct: 1070 TTLLGIHIRSSLASKKILEVDRLGPTAFEWILGEIEHQFYRSLAHSGEMVGTIAAQSIGE 1129

Query: 1084 PATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNV 1143
            PATQMTLNTFH+AGV +KNVTLGVPRLRE+INVAK ++TP+L+V+L+ G+ + +E+AK+V
Sbjct: 1130 PATQMTLNTFHFAGVGSKNVTLGVPRLRELINVAKNVRTPTLTVYLESGIANDQEQAKDV 1189

Query: 1144 QCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIE 1203
               LE+T L+++T    + YDP+   TI+E D  +V  YYE PD+     ++  WLLRI+
Sbjct: 1190 LTLLEHTMLQNITTIAHILYDPEQDKTIVEADKSWVSDYYEFPDDADITSRLGTWLLRIQ 1249

Query: 1204 LNREMMVDKKLSMAAVAEKINQEFD-DDLTCIFNDDNADKLILRIRIMN--------DEA 1254
            LN +++ DKKLSM  + +KI  EF  D+L CI+ DDN+D+L+LR+RI N        D  
Sbjct: 1250 LNNKLVTDKKLSMKEIGDKILMEFSKDELDCIWTDDNSDELVLRLRIKNIEPTNNIRDNI 1309

Query: 1255 PKGELND-------ESAEDDVFLKKIESNMLTEMALRGV--------------------- 1286
               E ND          E+  FL+K+ +  L+++ LRG+                     
Sbjct: 1310 HSSEENDSISPSITSGVEEHKFLEKLMTECLSQITLRGINNIKKVYMKEEQVSRYDSVSQ 1369

Query: 1287 ---------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
                           NL AV+CH  +D+ RT SN + E+  VLGIEAVRRALL ELR VI
Sbjct: 1370 KMVRDNQWVLDTDGCNLEAVLCHTAIDSTRTISNDITEVFSVLGIEAVRRALLRELRTVI 1429

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
            SFDGSYVNYRHLA+LCD MT +GHLM+ITRHGINR D GP+ +CSFEETV++L+DAA+F 
Sbjct: 1430 SFDGSYVNYRHLALLCDNMTQKGHLMSITRHGINRVDKGPLQKCSFEETVEVLMDAAMFG 1489

Query: 1392 ESDYLRGVTENIMLGQLAPIGTGDCSLYLN-DEMLKNAIELQLPSYMEGL----EFGMTP 1446
            E+DYL GV+EN+MLGQLAP GT    + ++ D++   A  L++      L        T 
Sbjct: 1490 ETDYLNGVSENVMLGQLAPYGTACFDVLIDPDKLRDTATHLEIHGEFAKLGKFSTLSQTT 1549

Query: 1447 ARSPVSGTPYHDGMMSPGYLFSPNLRL-------SPVTDAQFSPYVGGMAFSPTSSPGYS 1499
                 SG    D   SP    SP   L       SP+   QFSP    +  +P S    S
Sbjct: 1550 RSYSDSGAFESDSFESPMSPLSPMSPLYQSYEPMSPMISGQFSP----VQMTPRSP--MS 1603

Query: 1500 PSSPG-------------------YSPSSPGYSPTSPGY--------------------- 1519
            P SPG                   Y+P+SP Y+ +SP Y                     
Sbjct: 1604 PVSPGGIFSPVPYSPMSPSSPLMDYTPTSPIYAASSPTYNTEVSERARKKYKVNNTLSSY 1663

Query: 1520 ------------SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
                        S  SP  SPTSP YSPTSP YSP+SP YSPTSP YSPTSP YSPTSP 
Sbjct: 1664 SPSSPLNSDNKISNISPDLSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPH 1723

Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1627
            YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPT
Sbjct: 1724 YSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPTSPHYSPT 1783

Query: 1628 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTY 1687
            SP YSPTSP YSP+SP YSPTSP YSPTSP+Y+P SP YSPTS  YSPTSP+Y+PTSP Y
Sbjct: 1784 SPHYSPTSPHYSPSSPHYSPTSPQYSPTSPNYNPASPNYSPTS-HYSPTSPNYNPTSPNY 1842

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSP---TSSSYSPTSP 1739
            SP+SP+Y   ++        SP    ++ AS   P SP+YS      + YSP+SP
Sbjct: 1843 SPSSPNYISNNSGSPGYSPSSPQYDPIAVAS--VPRSPSYSVGKMVDAEYSPSSP 1895


>gi|291220940|ref|XP_002730482.1| PREDICTED: DNA-directed RNA polymerase II A-like [Saccoglossus
            kowalevskii]
          Length = 1932

 Score = 1754 bits (4544), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 916/1657 (55%), Positives = 1178/1657 (71%), Gaps = 107/1657 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V  VQF ILSPDEI++MSV +  I + ETTE G+PK  GL DPR G +DR  +
Sbjct: 9    SKAPLREVVRVQFSILSPDEIKRMSVTEGGIRYSETTEGGRPKLQGLMDPRQGVVDRLSR 68

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM +CPGHFGH+EL+KP+FH+GF+  V+ ++R  CF CSK+L D +  K K+ L
Sbjct: 69   CQTCAGNMHDCPGHFGHIELSKPVFHVGFIAKVVKVLRCFCFYCSKLLVDNNHPKIKEIL 128

Query: 126  KIRN---PKNRLKKILDACKNKTKCEGGDEIDVP--------GQDGEEPLK-KNKGGCGA 173
             I++   P+ RL  + + CK K  CEGG+E+D            + ++P K K  GGCG 
Sbjct: 129  -IKSKGLPRKRLGHVYELCKGKKVCEGGEEMDHKFDADLAQREDEADQPAKPKGHGGCGR 187

Query: 174  QQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
             QP +   G+++ AE+K     N+D +      E+K  LTAERVL + KRISDE+  ++G
Sbjct: 188  YQPSIRRAGLELTAEWK---NVNEDSQ------EKKIILTAERVLEIFKRISDEESLIIG 238

Query: 234  LNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNG 283
            ++P+Y RPDWMI+ VLP+PP  VRP+          DDLTH+LA I++ +  L+R E+NG
Sbjct: 239  MDPQYTRPDWMIVTVLPVPPLAVRPAVVMNGSAKNQDDLTHKLADIVKASNQLKRNEQNG 298

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGK 343
            A AHII+E  ++LQFH+ T  DNE PG PRA Q+SGRP+KSI  RLK KEGRIRGNLMGK
Sbjct: 299  AAAHIIAEDTKMLQFHVCTMVDNEQPGLPRAMQKSGRPLKSIKQRLKGKEGRIRGNLMGK 358

Query: 344  RVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKT 403
            RVDFSAR VITPDP ++IDQ+GVP +IA NLT+PE VTP+NI+R+ ELV+ G +  PG  
Sbjct: 359  RVDFSARAVITPDPNLSIDQVGVPRTIAQNLTFPELVTPFNIDRMHELVKRGNNQYPG-- 416

Query: 404  GAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
             AKYIIRD+G R+DLR+  K+SD HL+ GY+VERH+ D D+V+FNRQP+LHKMS+MGHRI
Sbjct: 417  -AKYIIRDNGDRIDLRFHPKASDLHLQCGYRVERHIRDNDYVIFNRQPTLHKMSMMGHRI 475

Query: 464  KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
            KI+P+STFRLNLSVT+PYNADFDGDEMN+HVPQS ET+AE+ E+++VP+ I++PQSN+PV
Sbjct: 476  KILPWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLETKAEISEIILVPRQIITPQSNKPV 535

Query: 524  MGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNL 583
            MGIVQD+L   RK TKRD F+EK+  M +LMW   +DGK+PQP ILKP+PLWTGKQ+ +L
Sbjct: 536  MGIVQDSLAAVRKFTKRDVFLEKEDVMILLMWLPSWDGKMPQPCILKPKPLWTGKQLMSL 595

Query: 584  IIPKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIH 639
            I+P  +NL RT + H D  D G    ++ GDT V IE GE+LSG LCKKTLGTS+GSL H
Sbjct: 596  IVPGNVNLVRTHSTHPDEEDTGPYKWISPGDTKVLIENGEVLSGILCKKTLGTSSGSLGH 655

Query: 640  VIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVK 699
            V++ E+G + A++F G+ Q +VN +LL    +IG+GD IADA+T + I +TI KAK +V 
Sbjct: 656  VVFVEMGHEIAKEFYGNIQTVVNNYLLIEGHTIGMGDCIADAQTYDDIQNTIRKAKQDVI 715

Query: 700  NLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGS 759
             +I++A +  LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN KAMV AGS
Sbjct: 716  EVIEKAHNDELEPSPGNTLRQTFENQVNRLLNDARDKTGSSAQKSLSEFNNFKAMVVAGS 775

Query: 760  KGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQ 819
            KGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP 
Sbjct: 776  KGSKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPT 835

Query: 820  EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGED 879
            EF+FHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV+YDGTVRNS   ++Q  YGED
Sbjct: 836  EFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVRYDGTVRNSNDALVQLRYGED 895

Query: 880  GMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDA 939
            G+D   +E Q + S+K     F+K F+F+   +     ++ ++ + D+    +++   + 
Sbjct: 896  GLDGAHVEFQDMPSMKPSNQAFEKRFKFDYTSDRVLRRFLTEDVVKDIIGSAQVQAALEE 955

Query: 940  EVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
            E + L+ DR+ L + I  + +S   LP NL+R+IWNA+K F ++ R+P+D+HP++V+E +
Sbjct: 956  EFELLKEDRHTLRS-IFPTRESKVVLPCNLQRMIWNAKKIFHINVRKPTDLHPVKVIEGL 1014

Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
             +L ++L +V G+D +S +AQ+NATL  NIL+R+T  S+R  +E RL+ EAFEW++GEIE
Sbjct: 1015 SELTKKLVIVKGDDSISRQAQENATLNMNILIRATLCSRRATEEFRLSAEAFEWLLGEIE 1074

Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
            +RF QS    GEM G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN++KK
Sbjct: 1075 TRFQQSQAQAGEMCGPLAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKK 1134

Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
             KTPSL+VFL        E+AK+V C LE+TTLR VT  T ++YDPDP  T+I ED ++V
Sbjct: 1135 PKTPSLTVFLTGQAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVITEDQDWV 1194

Query: 1180 KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
              YYEMPD D  P +ISPWLLRIEL+R+ M DKKLSM  +AEKIN  F DDL CIFNDDN
Sbjct: 1195 NVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLSMEQIAEKINAGFGDDLNCIFNDDN 1252

Query: 1240 ADKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV---------- 1286
            A+KL+LRIRIMN +  K +  +E     +DDVFL+ IE+NMLT+M L+G+          
Sbjct: 1253 AEKLVLRIRIMNSDENKYQDEEEQVDKMDDDVFLRCIEANMLTDMTLQGIEQISKVYLHL 1312

Query: 1287 ------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGI 1316
                                          +L+ V+   DVD  RTTSN + EI +VLGI
Sbjct: 1313 PKEESKKRIIITESGEFKALQEWILETDGTSLMKVLSERDVDPVRTTSNDICEIFQVLGI 1372

Query: 1317 EAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCS 1376
            EAVR+++  EL  VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR D G +MRCS
Sbjct: 1373 EAVRKSVEKELNHVISFDGSYVNYRHLALLCDIMTAKGHLMAITRHGINRQDVGALMRCS 1432

Query: 1377 FEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSY 1436
            FEETVDIL+DAA+ AE+D+++GV+ENIMLGQLA IGTG   L L+ E  K  +E  +PS 
Sbjct: 1433 FEETVDILMDAAMHAETDHMKGVSENIMLGQLAKIGTGSFDLLLDGEKCKYGME--IPS- 1489

Query: 1437 MEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
                  G+ P            G  +PG   SP  +++P        Y  G A+SP    
Sbjct: 1490 ----NIGLMPGGGTTGIFFGSLGTPAPG--MSP--QMTPWNQGATPAY--GAAWSPGVGS 1539

Query: 1497 GYSPSSPGYSPSSPG-YSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPS-----SPGYSPT 1550
            G +P + G+SPS+    S  SPGYSP +    P SP     +  Y PS     SP Y+PT
Sbjct: 1540 GMTPGAAGFSPSAQSDASGFSPGYSP-AWSPQPGSPSSPGPTSPYMPSPSDAMSPTYAPT 1598

Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1587
            SPAY P SPS +P SPSYSPTSPSYSPTSP YSPTSP
Sbjct: 1599 SPAYEPGSPSVTPQSPSYSPTSPSYSPTSPGYSPTSP 1635



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 62/113 (54%), Gaps = 41/113 (36%)

Query: 1720 YSPTSPNYSPTS---------------------SSYSPTSPSYSPSSPTYSPSSPYNAGG 1758
            Y+PTSP YSPTS                       YSPTSP+YSP+SP YSP+SP     
Sbjct: 1826 YTPTSPKYSPTSPTYSPASPSYSPSSPKYSPTSPKYSPTSPTYSPTSPKYSPTSP----- 1880

Query: 1759 GNPDYSPSSPQYSPS-----------AGYSPSAPGYSPSSTSQYTPQTNRDDS 1800
                YSP+SP+YSP+           + YSP++PGYSP+S S Y+P +  +DS
Sbjct: 1881 ---TYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPS-YSPTSPMEDS 1929


>gi|307198840|gb|EFN79616.1| DNA-directed RNA polymerase II subunit RPB1 [Harpegnathos saltator]
          Length = 1906

 Score = 1754 bits (4544), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 897/1637 (54%), Positives = 1136/1637 (69%), Gaps = 115/1637 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV    I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA- 124
            C+TC  NM ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L    + K K+  
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFYCSKLLVSPHNPKIKEVI 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEE--PLKK--NKGGCGAQQPKLT 179
            +K +  P+ RL  I D CK+K  CEGGDE+D+  ++ E   P+++    GGCG  QP L 
Sbjct: 126  MKTKGQPRKRLTHIYDLCKSKNICEGGDEMDINKENSENQPPVERKPGHGGCGRYQPNLR 185

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
              G+ + AE+K     N+D +      E+K  LTAER   +LK I DE+  +LG++PK+A
Sbjct: 186  RSGLDVTAEWK---HVNEDSQ------EKKIVLTAERAWEILKHIKDEESFILGMDPKFA 236

Query: 240  RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RPDWMI+ VLP+PP  VRP+          DDLTH+LA II+ N  L R E++GA AH+I
Sbjct: 237  RPDWMIVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKSNNELLRNEQSGAAAHVI 296

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            SE  ++LQFH AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSA
Sbjct: 297  SENIKMLQFHAATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 356

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ LV  G    PG   AKYI+
Sbjct: 357  RTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQVLVRRGNSQYPG---AKYIV 413

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD+G+R+DLR+  KSSD HL+ GY+VERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+S
Sbjct: 414  RDNGERIDLRFHPKSSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWS 473

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQD
Sbjct: 474  TFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQD 533

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK+TKRD FIEK+  MN+LM+   +DGK+PQP ILKP+P+WTGKQ+F+LIIP  +
Sbjct: 534  TLTAVRKMTKRDVFIEKEQMMNLLMFLPSWDGKMPQPCILKPKPMWTGKQLFSLIIPGNV 593

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            N+ RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E+
Sbjct: 594  NMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A
Sbjct: 654  GHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS IN
Sbjct: 714  HNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHA
Sbjct: 774  ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    
Sbjct: 834  MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGET 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E Q L ++K+    F+K F+F+   E +      +E + ++    E+    + E ++L 
Sbjct: 894  VEFQNLPTIKVSNKAFEKKFKFDPTNERYLRRIFNEEIVREMMGSGEVISELEREWEQLN 953

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L  EI  SG+S   LP NL+R+IWN QK F ++ R P+D+ PM V++ V  L ++
Sbjct: 954  RDRTVL-REIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLDK 1012

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
              +V G+D LS +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+
Sbjct: 1013 CIIVAGDDRLSKQANENATLLFRCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQA 1072

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
             V+PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL
Sbjct: 1073 QVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSL 1132

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +VFL        E+AKNV C LE+TTL+ VT  T ++YDPDP  T+I ED EFV  YYEM
Sbjct: 1133 TVFLTGAAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEM 1192

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PD D  P KISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+L
Sbjct: 1193 PDFD--PTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVL 1250

Query: 1246 RIRIMNDEAPKGELNDE----SAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            RIRIMN +  K +  DE      EDD+FL+ IE+NML++M L+G+               
Sbjct: 1251 RIRIMNSDDNKFQETDEEPMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDA 1310

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     +L+ V+   DVD  RT SN + EI +VLGIEAVR+
Sbjct: 1311 KKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1370

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1371 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM---- 1437
            D+LLDAA  AE D +RGV+ENI++GQL  IGTG   L L+ E  K  IE+ +        
Sbjct: 1431 DVLLDAASHAEVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPIAVGAGVMG 1490

Query: 1438 -EGLEFGMTPARSPVS--GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS 1494
              G+ FG  P  S +S   TP+     +PGY       +SP   +  +P  GG  FSP+ 
Sbjct: 1491 SAGMFFGSVPGMSSMSPQMTPWMGA--TPGY---GASSMSPAMSSGMTP--GGACFSPSG 1543

Query: 1495 SPGYSPSSPGYS-------------------PSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1535
            +   S  SP YS                   P SP     SP YSPTSP Y PTSP  +P
Sbjct: 1544 ASDASGMSPAYSAYSPQPGSPGSPGPSMSPFPMSPA-GAASPSYSPTSPAYLPTSPSMTP 1602

Query: 1536 TSPTYSPSSPGYSPTSP 1552
            +SP YSP+SP YSPTSP
Sbjct: 1603 SSPNYSPTSPTYSPTSP 1619



 Score =  120 bits (301), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 63/74 (85%)

Query: 1537 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1596
            S  YSPSSP YSPTSP YSPTSP YSP+S  YSPTSP+Y+PTSPSYSPTSP+YSP  P Y
Sbjct: 1829 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1888

Query: 1597 SPTSPSYSPTSPAY 1610
            SPTSP+YSP SPAY
Sbjct: 1889 SPTSPTYSPASPAY 1902



 Score =  120 bits (300), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 57/74 (77%), Positives = 64/74 (86%)

Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
            S  YSP+SP+YSPTSP+YSPTSP YSP+S  YSPTSP+Y+PTSPSYSPTSP+YSP  P Y
Sbjct: 1829 STRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGY 1888

Query: 1611 SPTSPAYSPTSPAY 1624
            SPTSP YSP SPAY
Sbjct: 1889 SPTSPTYSPASPAY 1902



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 94/114 (82%), Gaps = 1/114 (0%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT-SPSYSPTSPSYSPTSPSYSP 1647
            ++ TSP Y+P SP+YSPTSP YSPTSP+YSP+SP ++ + S  YSP+SP+YSPTSP+YSP
Sbjct: 1789 FAGTSPQYTPASPTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSP 1848

Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY 1701
            TSP YSP+S  YSPTSP Y+PTSP YSPTSP+YSP  P YSPTSP+Y+P S  Y
Sbjct: 1849 TSPQYSPSSTKYSPTSPTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAY 1902



 Score =  109 bits (272), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 82/121 (67%), Positives = 98/121 (80%), Gaps = 8/121 (6%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSP 1605
            ++ TSP Y+P SP+YSPTSP+YSPTSPSYSP+SP ++ + S  YSP+SP+YSPTSP+YSP
Sbjct: 1789 FAGTSPQYTPASPTYSPTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSP 1848

Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1665
            TSP YSP+S  YSPTSP Y+       PTSPSYSPTSP+YSP  P YSPTSP+YSP SPA
Sbjct: 1849 TSPQYSPSSTKYSPTSPTYT-------PTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPA 1901

Query: 1666 Y 1666
            Y
Sbjct: 1902 Y 1902


>gi|156083004|ref|XP_001608986.1| DNA-directed RNA polymerase II largest subunit [Babesia bovis T2Bo]
 gi|154796236|gb|EDO05418.1| DNA-directed RNA polymerase II largest subunit, putative [Babesia
            bovis]
          Length = 1746

 Score = 1753 bits (4541), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 901/1769 (50%), Positives = 1195/1769 (67%), Gaps = 122/1769 (6%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            P+SP ++ KVR ++FG+  P+ I+++SV ++   E    G P  GGL+D R+GT D +  
Sbjct: 10   PFSPCDLKKVRGIEFGMFDPEMIKRLSVCEVTQTELYREGVPHTGGLNDLRMGTTDARHN 69

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C TC  ++  C GHFGH+ LAK M+H   + +VL ++R VCFNCS +L D++D + K  +
Sbjct: 70   CLTCFMDVKYCTGHFGHITLAKEMYHCCLLTSVLKVLRCVCFNCSSLLCDKEDPRVKNLM 129

Query: 126  KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKM 185
            K+R+   RL K+ + C +  +C+   + +V G   +        GCG  QPK T EG  +
Sbjct: 130  KLRSTGTRLLKMAEICTSSPRCQ---QAEVSGSKMK--------GCGYPQPKYTKEGTSL 178

Query: 186  IAEYKAQRKKNDDQEQLPEPV-----ERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            + ++      +D   Q+ E V     E K++ TAE    VLK IS +D + LG NP+ ++
Sbjct: 179  MIQF------SDKHRQMLEEVDEDCEEIKRSFTAEEAYKVLKNISHDDMRYLGFNPERSQ 232

Query: 241  PDWMILQVLPIPPPPVRP---------SDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            P WMIL+VLP+PPP VRP          DDLT +L  I++ N  LR+ E      HI  E
Sbjct: 233  PAWMILKVLPVPPPAVRPYVAYGSDRSEDDLTLKLLDIVKANNMLRKHEERATAPHIAEE 292

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
             +QLLQ+H+ T FDNELPG P A+ RS +PIKS+ +RLK K GR+RGNLMGKRVDF ART
Sbjct: 293  ISQLLQYHLTTLFDNELPGMPVASTRSKKPIKSLRARLKGKGGRLRGNLMGKRVDFCART 352

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VIT DP + +D +GVP SIA+ LT+ ETVTP N+E L++ VE GPH  PG   AKYI+R 
Sbjct: 353  VITGDPNLPVDVIGVPKSIAMTLTFSETVTPLNLENLRKKVEMGPHEWPG---AKYIVRA 409

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            DG R DLR++K++SD  LE GY+VERHL DGD++LFNRQPSLHKMSIMGHR K++PYSTF
Sbjct: 410  DGSRFDLRHVKRASDLQLEYGYRVERHLQDGDYILFNRQPSLHKMSIMGHRCKVLPYSTF 469

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            RLNLSVTSPYNADFDGDEMN+H+ Q+ ETRAEV  LM+VPK IVSPQ NRPVMGIVQD+L
Sbjct: 470  RLNLSVTSPYNADFDGDEMNLHLAQTHETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSL 529

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP----- 586
            LG  K T+RD F+ KD+ MN+LMW   +DGK+PQP I  P PLWTGKQV ++++      
Sbjct: 530  LGISKFTRRDCFLTKDMLMNLLMWIPYWDGKLPQPCIFHPVPLWTGKQVVSIMLTFDQMN 589

Query: 587  --KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
                INL R +A   +ND    +A D+ V I K E LSG +CKKT+GTS+GSLIHV+W E
Sbjct: 590  SLTCINLMRNSAVALENDNPYCSANDSKVIISKNEHLSGIICKKTVGTSSGSLIHVLWHE 649

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
             GPD  + FL   Q +VN WL+ N F++   D +A   T+  + + + ++K  V+ L+  
Sbjct: 650  AGPDRCKDFLTTLQKVVNNWLVYNGFTVSCSDIMASESTLTQVAEILERSKKEVQRLVGL 709

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            AQ   L+ +PG+++ ESFE +VN+ LN AR+++G+ A KSL E NN+ AMV +GSKGS I
Sbjct: 710  AQRGKLKCQPGKSLFESFEARVNKELNEAREQSGTIAAKSLDERNNILAMVNSGSKGSTI 769

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ ACVGQQNVEGKR+PFGF DR+LPHF K DYGPESRGFV NSYL GLTPQE FFH
Sbjct: 770  NISQIIACVGQQNVEGKRVPFGFRDRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFH 829

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AMGGREG+IDTA KTSETGY+QRRL+KAMEDIMV YD TVR+  GD++QFLYGEDGM + 
Sbjct: 830  AMGGREGVIDTACKTSETGYVQRRLMKAMEDIMVHYDKTVRSGGGDILQFLYGEDGMGAE 889

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYI-DDLKTIKELRDVFDAEVQK 943
            ++E QTLD +K+  +  ++ +  +   EN+   ++L E +  ++ T    + +   E Q+
Sbjct: 890  YVEDQTLDLMKLDFASLNRLYAHDFRNENYGVGWILDESVRTNILTDFSKQVILVEEYQR 949

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            +   +  L  ++   G++   LP+N+ RL+  A+  F         M+P+++ + V +L 
Sbjct: 950  ILDMKAILCKQVFPDGEARQHLPINISRLLEYAKTQFPTTTESRKLMNPVDIAQRVQQLL 1009

Query: 1004 ERLKVVPGEDP---LSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
            + L +V    P   L+ EAQ+NAT+     L +   S+R+++  ++   AF+W++GE++ 
Sbjct: 1010 DSLTIVVTSGPHDILAAEAQENATILIKAHLSTALNSRRLMEREKIGNLAFDWLLGEVKR 1069

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
             F +S+  PGE +G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLG+PRL+E+INV + +
Sbjct: 1070 IFYKSICHPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVRNV 1129

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            KTPSL++ L  GV   +ERAK++Q  LEYTTL  V   ++V YDP+   TI+ +D  +V+
Sbjct: 1130 KTPSLTIHLDRGVAHDQERAKDMQTRLEYTTLDKVVALSQVIYDPNVSQTIVPKDYAWVR 1189

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEF-DDDLTCIFNDDN 1239
             YYE PDED+   ++ PW+LRI+L+ ++M DK+L+M  + ++I QEF +D++ CI  DDN
Sbjct: 1190 EYYEFPDEDM--NRLGPWVLRIQLSNKVMTDKRLTMKEIVDRIYQEFSNDEIDCIHTDDN 1247

Query: 1240 ADKLILRIRIM--NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV----------- 1286
             D+L+LRIR+   N +  +  + +   E   FL++  S +L  + LRGV           
Sbjct: 1248 NDELVLRIRVKYSNMDVDQQNMGENEGE---FLQRFMSQVLVNVKLRGVSKITKVYMREE 1304

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     NL  V+    VDA+++ SN + EI  VLGIEA R 
Sbjct: 1305 ARTKYNETNGRFERVSQWVLDTDGCNLEDVLSIPCVDAQKSISNDISEIFHVLGIEAARM 1364

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ALL ELR VISFDGSYVNYRHL++LCD MT +GH+M+ITRHG+NR D GP+++CSFEET+
Sbjct: 1365 ALLRELRAVISFDGSYVNYRHLSLLCDVMTQKGHIMSITRHGLNRADRGPLVKCSFEETL 1424

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNA---IELQLPSYME 1438
            + L+DAAVFAE D L+GVTEN+MLGQL P+GTG   + ++DE L++A   +++   S + 
Sbjct: 1425 EALVDAAVFAELDLLKGVTENVMLGQLCPMGTGSFDIMIDDEKLRDANQNLQIMPDSALS 1484

Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSP---TSS 1495
            G         SP S +P     MSP  +   N  LSP+    FSP    +  SP    SS
Sbjct: 1485 GFT-------SPESTSP---DSMSPAKI---NSMLSPLP---FSPSYAALMMSPIVNVSS 1528

Query: 1496 PGYSPSSPGYSPSSPG--YSPT--SPGYSPTSPGYSPTSPGYSPTSPT-YSPSSPGYSPT 1550
            P +  +SP     + G  +SPT  SP  SP SP Y+P SP  +P SP   SPS    SPT
Sbjct: 1529 PSFV-TSPAVDTKALGGSFSPTIMSPQ-SPVSPSYAPLSP--NPLSPNPLSPSMGMMSPT 1584

Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
            SP YSPTSP Y      YSP SP+YSPTSP YSPTSP YSPTSP+YSPTSP+YSPTSPAY
Sbjct: 1585 SPVYSPTSPVYGQAGGVYSPASPAYSPTSPLYSPTSPVYSPTSPAYSPTSPAYSPTSPAY 1644

Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPAYSP 1668
            SPTSPAYSPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+  Y PTSP+Y PTSPAYSP
Sbjct: 1645 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPNLGYLPTSPAYRPTSPAYSP 1704

Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
            TSP YSPTSP+YSPTSP YSPTSP Y+P+
Sbjct: 1705 TSPAYSPTSPAYSPTSPVYSPTSPEYSPE 1733



 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 138/258 (53%), Positives = 164/258 (63%), Gaps = 36/258 (13%)

Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPTS--PSY 1596
            SP S      SPA   +  S  P SPSY+    SP  + +SPS+  TSP+    +   S+
Sbjct: 1488 SPESTSPDSMSPAKINSMLSPLPFSPSYAALMMSPIVNVSSPSFV-TSPAVDTKALGGSF 1546

Query: 1597 SPTSPS-YSPTSPAYSPTSPAYSPTSPAYSPTSPSY---SPTSPSYSPTSPSYSPTSPSY 1652
            SPT  S  SP SP+Y+P SP  +P SP  +P SPS    SPTSP YSPTSP Y      Y
Sbjct: 1547 SPTIMSPQSPVSPSYAPLSP--NPLSP--NPLSPSMGMMSPTSPVYSPTSPVYGQAGGVY 1602

Query: 1653 SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSP 1712
            SP SP+YSPTSP YSPTSP YSPTSP+YSPTSP YSPTSP             AYSP+SP
Sbjct: 1603 SPASPAYSPTSPLYSPTSPVYSPTSPAYSPTSPAYSPTSP-------------AYSPTSP 1649

Query: 1713 RLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGG--GNPDYSPSSPQY 1770
                   YSPTSP YSPTS +YSPTSP+YSP+SP YSP+SP N G    +P Y P+SP Y
Sbjct: 1650 ------AYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP-NLGYLPTSPAYRPTSPAY 1702

Query: 1771 SPSA-GYSPSAPGYSPSS 1787
            SP++  YSP++P YSP+S
Sbjct: 1703 SPTSPAYSPTSPAYSPTS 1720



 Score =  169 bits (427), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/247 (49%), Positives = 148/247 (59%), Gaps = 45/247 (18%)

Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSPA---------Y 1610
            SP S S    SP+   +  S  P SPSY+    SP  + +SPS+  TSPA         +
Sbjct: 1488 SPESTSPDSMSPAKINSMLSPLPFSPSYAALMMSPIVNVSSPSFV-TSPAVDTKALGGSF 1546

Query: 1611 SPT--SPAYSPTSPAYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
            SPT  SP  SP SP+Y+P SP+  P SP+  SP+    SPTSP YSPTSP Y      YS
Sbjct: 1547 SPTIMSPQ-SPVSPSYAPLSPN--PLSPNPLSPSMGMMSPTSPVYSPTSPVYGQAGGVYS 1603

Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPN 1726
            P SP YSPTSP YSPTSP YSPTSP+Y+P S       AYSP+SP  SP SP YSPTSP 
Sbjct: 1604 PASPAYSPTSPLYSPTSPVYSPTSPAYSPTSP------AYSPTSPAYSPTSPAYSPTSPA 1657

Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPS 1786
            YSPTS +YSPTSP+YSP+SP YSP+S                   P+ GY P++P Y P+
Sbjct: 1658 YSPTSPAYSPTSPAYSPTSPAYSPTS-------------------PNLGYLPTSPAYRPT 1698

Query: 1787 STSQYTP 1793
            S + Y+P
Sbjct: 1699 SPA-YSP 1704


>gi|324120568|dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
          Length = 1792

 Score = 1753 bits (4541), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 902/1646 (54%), Positives = 1156/1646 (70%), Gaps = 101/1646 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I++ ET E G+PK GGL DPR G +DR  +
Sbjct: 6    SKAPLRTVKRVQFGILSPDEIRRMSVTEGGIKYPETYEGGRPKIGGLMDPRQGVMDRMSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM+ECPGHFGH++LAKP++H+GF+   + I+R VCF CSK+L    + K K+ +
Sbjct: 66   CQTCAGNMSECPGHFGHIDLAKPVYHVGFLTKTIKILRCVCFFCSKMLVSPSNAKIKEII 125

Query: 126  -KIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGG------CGAQQPK 177
             K R  P+ RL  + D CK K  CEGGDE+D+  ++ + P    K        CG  QP 
Sbjct: 126  TKSRGQPRKRLTFVYDLCKGKNICEGGDEMDITKENPDNPGGGGKDKKPGHGGCGRYQPN 185

Query: 178  LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
            +   G+ + AE+K     N+D +      E+K +L+AERV  +LK I+DE+C +LG++PK
Sbjct: 186  IRRAGLDLTAEWK---HTNEDNQ------EKKISLSAERVWEILKHITDEECLILGMDPK 236

Query: 238  YARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAH 287
            +ARPDWM++ VLP+PP  VRP+          DDLTH+LA II+ N  L R E+ GA AH
Sbjct: 237  FARPDWMLVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKSNNELTRNEQAGAAAH 296

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            IISE  ++LQFH+AT+ DN++PG PRA Q+SG+P+K++ +RLK KEGRIRGNLMGKRVDF
Sbjct: 297  IISENMKMLQFHVATFIDNDMPGLPRAMQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDF 356

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVITPDP + IDQ+GVP SIA NLT+PE +TP+NI++++ELV  G    PG   AKY
Sbjct: 357  SARTVITPDPNLRIDQVGVPRSIAQNLTFPEIITPFNIDKMQELVRRGNSQYPG---AKY 413

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            IIRD+G+R+DLR+  + SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P
Sbjct: 414  IIRDNGERIDLRFHPRPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLP 473

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            +STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  L + P+ I++PQ+N+PVMGIV
Sbjct: 474  WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQANKPVMGIV 533

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL   RK+TKRD F++++  MNILM+   +DGK+P P ILKPRPLWTGKQVF+LIIP 
Sbjct: 534  QDTLTAVRKMTKRDVFLDQEQMMNILMFLPIWDGKMPIPAILKPRPLWTGKQVFSLIIPG 593

Query: 588  QINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
             +N+ RT + H D+ D G    ++ GDT V +E GEL+ G LCK++LGTS GSL+H+   
Sbjct: 594  NVNMIRTHSTHPDDEDDGPYKWVSPGDTKVMVEHGELIMGILCKQSLGTSAGSLLHICML 653

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
            E+G +   +F G+ Q ++N+WLL    SIGIGDTIAD +T   I   I KAK +V  +I+
Sbjct: 654  ELGHEVCGQFYGNIQTVINHWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQ 713

Query: 704  QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
            +A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV AGSKGS 
Sbjct: 714  KAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSN 773

Query: 764  INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
            INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 774  INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF 833

Query: 824  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
            HAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGT+RNS+G +IQ  YGEDG+  
Sbjct: 834  HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAG 893

Query: 884  VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
              +E Q+L ++K+   +F+K FRF+   E        ++ + +L    ++    + E ++
Sbjct: 894  ETVEFQSLPTIKLSNKQFEKRFRFDATNERHLRRIFNEDVLRELMGSGDVISALEKEWEQ 953

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            L+ DR  L  +I  SG++   LP NL R+IWN QK F ++ R P+D+ P++V+E V  L 
Sbjct: 954  LQRDREAL-RQIFPSGENRVVLPCNLTRMIWNVQKIFHINIRSPTDLSPLKVIEGVRDLL 1012

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
            ++  +V GEDPLS +A +NATL F  L+RST  +K V +  RL+ EAFEW+IGEIE+RF 
Sbjct: 1013 QKCVIVAGEDPLSKQANENATLLFQCLIRSTLCTKGVSENMRLSSEAFEWLIGEIETRFQ 1072

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            Q+ VAPGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K P
Sbjct: 1073 QAQVAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAP 1132

Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
            SL+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YY
Sbjct: 1133 SLTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVITEDQEFVTVYY 1192

Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
            EMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL
Sbjct: 1193 EMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1250

Query: 1244 ILRIRIMN--DEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            +LR+RIMN  D+    E N +  EDD+FL+ IE+NML++M L+G+               
Sbjct: 1251 VLRLRIMNNDDKGQDDEENQDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDA 1310

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     +L+ V+   DVD  RT SN + EI  VLGIEAVR+
Sbjct: 1311 KKRIVVTETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRK 1370

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1371 SVEKEMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLE 1441
            D+L+DAA  AE D +RGV+ENI+LGQL  +GTG   L L+ +  K  IE+  P  M G  
Sbjct: 1431 DVLMDAASHAELDPMRGVSENIILGQLPRMGTGCFDLLLDKDKCKAGIEI--PMSMGGGM 1488

Query: 1442 FGMTPARSPVSGTPYHDGMMSPGYLFSP-NLRLSPVTDAQFSPYVGGMAFSPTSSPGYSP 1500
             G        + TP    MMSP    +P N+  +P   + +SP +G    +P        
Sbjct: 1489 MGGVGIMFGSAATP---SMMSPSR--TPWNMGQTPGYGSSWSPAIGS-GMTPGGPSFSPS 1542

Query: 1501 SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG-----YSPTSPAYS 1555
             S   S  SPGYSP SPG      G SP+SPG  P +  Y PS  G     YSP+SP Y+
Sbjct: 1543 GSSDASGLSPGYSPWSPG----GGGVSPSSPG--PAASPYIPSPGGALSPSYSPSSPTYA 1596

Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPS 1581
            PTSPS SP SP+YSPTSPSYSPTSP+
Sbjct: 1597 PTSPSMSPASPNYSPTSPSYSPTSPN 1622



 Score = 48.1 bits (113), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 54/90 (60%), Gaps = 17/90 (18%)

Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT--SPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
            S  SP YSP SP     SPS SP  PA SP   SPG    SPSYSP+SPTY+PTSPS +P
Sbjct: 1548 SGLSPGYSPWSPGGGGVSPS-SP-GPAASPYIPSPG-GALSPSYSPSSPTYAPTSPSMSP 1604

Query: 1697 QSAKYSPSLAYSPSSPRLSPASPYSPTSPN 1726
             S  YSP+   SPS         YSPTSPN
Sbjct: 1605 ASPNYSPT---SPS---------YSPTSPN 1622


>gi|324120540|dbj|BAJ78661.1| RNA polymerase II largest subunit [Teleogryllus emma]
          Length = 1909

 Score = 1747 bits (4524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 891/1639 (54%), Positives = 1146/1639 (69%), Gaps = 116/1639 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGIL+PDEIR+MSV +  I   ET E G+PK GGL DPR G +DR  +
Sbjct: 6    SKAPLRSVKRVQFGILAPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVMDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  N  ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L    + K K+  
Sbjct: 66   CQTCAGNQTECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFYCSKLLVSPTNPKIKEIV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDG------EEPLKKNKGGCGAQQPK 177
            +K +  P+ RL  + D CK K  CEGGDE+D+  ++       ++  K   GGCG  QP 
Sbjct: 126  MKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKENDPNDPNQQQSRKAGHGGCGRYQPS 185

Query: 178  LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
            +   G+ + AE+K     N+D +      E+K +L+AERV  +LK I+DE+C +LG++PK
Sbjct: 186  IRRSGLDLTAEWK---HVNEDSQ------EKKISLSAERVWEILKHITDEECFILGMDPK 236

Query: 238  YARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAH 287
            +ARPDWMI+ VLP+PP  VRP+          DD+TH+ + II+ N  L R E+ GA AH
Sbjct: 237  FARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDDITHKTSDIIKSNNELIRNEQAGAAAH 296

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            +ISE  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDF
Sbjct: 297  VISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 356

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVITPDP + IDQ+GVP SIA N+T+PE VTP+NI++++ELV  G    PG   AKY
Sbjct: 357  SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPG---AKY 413

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            I+RD+G+R+DLR+  KSSD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P
Sbjct: 414  IVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLP 473

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            +STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  L + P+ I++PQ+N+PVMGIV
Sbjct: 474  WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQANKPVMGIV 533

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL   RK+TKRD F+EK+  MN+LM+   +DGK+PQP ILKP+PLWTGKQVF+LIIP 
Sbjct: 534  QDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPG 593

Query: 588  QINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
             +N+ RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + 
Sbjct: 594  NVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFL 653

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
            E+G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I+
Sbjct: 654  ELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQ 713

Query: 704  QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
            +A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS 
Sbjct: 714  KAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSN 773

Query: 764  INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
            INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 774  INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF 833

Query: 824  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
            HAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+  
Sbjct: 834  HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCG 893

Query: 884  VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
              +E Q L ++K+    F+K F+F+   E        ++ + +L    ++    + E ++
Sbjct: 894  ETVEFQNLPTIKLSNKAFEKKFKFDPTNERHLRRIFNEDIMKELMGSGDVISELEKEWEQ 953

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            L  DR  L  +I  SG+S   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V+ L 
Sbjct: 954  LVKDREAL-RQIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVNDLL 1012

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
            ++  +V G+D LS +A KNATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF 
Sbjct: 1013 KKCIIVAGDDHLSKQANKNATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQ 1072

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            Q+ V+PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K P
Sbjct: 1073 QAQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAP 1132

Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
            SL+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YY
Sbjct: 1133 SLTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYY 1192

Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
            EMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL
Sbjct: 1193 EMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1250

Query: 1244 ILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV-------------- 1286
            +LRIRIMN +  K +  +E+    EDD+FL+ IE+NML++M L+G+              
Sbjct: 1251 VLRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD 1310

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                      +++ V+   DVD  RT SN + EI  VLGIEAVR
Sbjct: 1311 SKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVR 1370

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
            +++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEET
Sbjct: 1371 KSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1430

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME-- 1438
            VD+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  IE+ +       
Sbjct: 1431 VDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMSVGAGMI 1490

Query: 1439 ---GLEFG--MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSP--VTDAQFSPYVGGMAFS 1491
               G+ FG   TP+ SP   TP++    +PGY  S +   SP  V  +  +P  GG +FS
Sbjct: 1491 GGVGMFFGSAATPSMSP-QMTPWNQS-ATPGYSSSWS---SPGNVYGSGMTP--GGPSFS 1543

Query: 1492 PTSSPGYSPSSPGY-------------SPSSPGYSPT-----SPGYSPTSPGYSPTSPGY 1533
            P+ +   S  SPGY              PS   Y P+     SP YSP+SP Y+PTSP  
Sbjct: 1544 PSGASDSSGLSPGYSPWSPQISSPSSPGPSMSPYIPSPVSGLSPNYSPSSPAYAPTSPSL 1603

Query: 1534 SPTSPTYSPSSPGYSPTSP 1552
            +P+SP YSP+SP YSPTSP
Sbjct: 1604 TPSSPNYSPTSPSYSPTSP 1622


>gi|312375441|gb|EFR22815.1| hypothetical protein AND_14157 [Anopheles darlingi]
          Length = 1880

 Score = 1746 bits (4521), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 911/1676 (54%), Positives = 1169/1676 (69%), Gaps = 126/1676 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I+  ET E G+PK  GL DPR G I+R  +
Sbjct: 5    SKAPLRTVKRVQFGILSPDEIRRMSVTEGGIQFAETMEGGRPKLCGLMDPRQGVIERTSR 64

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  
Sbjct: 65   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPTNPKIKEIV 124

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDG-EEPLKKN-KGGCGAQQPKLTIE 181
            +K +  P+ RL  + D CK K  CEGG+++D+    G  +P KK   GGCG  QP +   
Sbjct: 125  MKSKGQPRKRLAYVYDLCKGKKICEGGEDMDLTKDGGVADPSKKQGHGGCGHYQPSIRRT 184

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ ++AE+K   + ND+ +      E+K  ++AERV  +LK I+DE+C +LG++PK+ARP
Sbjct: 185  GLDLMAEWK---EVNDENQ------EKKMQVSAERVYEILKHITDEECYVLGMDPKFARP 235

Query: 242  DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            DWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  L++ E+ GA AH+I+E
Sbjct: 236  DWMIITVLPVPPLAVRPAVVMFGATKNQDDLTHKLSDIIKANNELKKNEQTGAAAHVIAE 295

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              ++LQFH+AT  DN++PG P+A Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 296  NIKMLQFHVATLVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 355

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VITPDP + IDQ+GVP S+A N+T+PE VTP+NI+R++ELV  G    PG   AKYI+RD
Sbjct: 356  VITPDPNLRIDQVGVPRSVAQNMTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRD 412

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 413  NGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 472

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            R+NLS TSPYNADFDGDEMN+HVPQS ETRAE+  + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 473  RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHITPRQIITPQANKPVMGIVQDTL 532

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
               RK+TKRD FIEK+  MN+LM+   +DGK+PQP ILKP+PLWTGKQ+F LIIP  +N+
Sbjct: 533  TAVRKMTKRDVFIEKEQMMNLLMFLPTWDGKMPQPCILKPKPLWTGKQIFTLIIPGNVNM 592

Query: 592  FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+++ E+G 
Sbjct: 593  IRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHIVFLELGH 652

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            + A +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A +
Sbjct: 653  EIAGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYAEIQRAIRKAKEDVIGVIQKAHN 712

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 713  MELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 772

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 773  QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAMG 832

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E
Sbjct: 833  GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGEAVE 892

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
             Q L ++K+    F+K +RF+   E        ++ I +L     +    +AE ++L  D
Sbjct: 893  FQNLPTIKLSNKVFEKRYRFDPTNERTLRRIFNEDVIKELTESASVIQEIEAEYEQLMRD 952

Query: 948  RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1007
            R  L  +I  +GDS   LP NL+R+IWN QK F ++ R P+D+ P++V++ V  L +R  
Sbjct: 953  REAL-RQIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPLKVIQGVRDLLQRCV 1011

Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            +V G D LS +A +NATL F  L+RST  +K V +E RL  EAFEW+IGEIE+RF Q+ V
Sbjct: 1012 IVAGTDRLSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQV 1071

Query: 1068 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1127
             PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+V
Sbjct: 1072 NPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTV 1131

Query: 1128 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1187
            FL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD
Sbjct: 1132 FLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMPD 1191

Query: 1188 EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1247
             D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNADKL+LRI
Sbjct: 1192 FD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLRI 1249

Query: 1248 RIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV------------------ 1286
            RIMN++    E  +E+    EDD+FL+ IE+NML++M L+G+                  
Sbjct: 1250 RIMNEDNKFQENEEENVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKR 1309

Query: 1287 ----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                                  +++ V+   DVD  RT SN + EI  VLGIEAVR+++ 
Sbjct: 1310 IVITPEGEFKPIGEWLLETDGTSMMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSVE 1369

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
             E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L
Sbjct: 1370 KEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1429

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM--EGLEF 1442
             DAA  AE D +RGV+ENI+LGQL  +GTG   L L+ E  K  +E+   S M   G+ F
Sbjct: 1430 NDAAAHAEVDPMRGVSENIILGQLPRMGTGCFDLLLDAEKCKLGMEIPHTSIMGATGMFF 1489

Query: 1443 G--MTPARSP--VSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS---S 1495
            G   TP+ +P   S TP + G    G    P   ++P          GG +FSP++   +
Sbjct: 1490 GSAATPSMTPWQQSATPGYGGWSPSG----PASGMTP----------GGPSFSPSAQSDA 1535

Query: 1496 PGYSPSSPGYSP---------------------SSPGYSPTSPGYSPTSPGYSPTSPGYS 1534
             G SPSS  +SP                      SP YSP+SP Y+P SPG +  SP YS
Sbjct: 1536 SGMSPSS--WSPIRGSPSSPGPSMSPYPPSSPSMSPSYSPSSPNYAPNSPGGA--SPSYS 1591

Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1590
            PTSP YSP SP YSP S  YSP+SP+  P +  YSPTSPSYSP SP +  ++ +Y+
Sbjct: 1592 PTSPCYSPPSPQYSPGSSNYSPSSPNIHPATQKYSPTSPSYSPMSPMHPTSASNYA 1647



 Score = 53.1 bits (126), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/157 (35%), Positives = 78/157 (49%), Gaps = 8/157 (5%)

Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSP--GYSPTSPSYSPTSPT----YSPTSPSYNPQSA 1699
            S  +PS +P   S +P    +SP+ P  G +P  PS+SP++ +     SP+S S    S 
Sbjct: 1491 SAATPSMTPWQQSATPGYGGWSPSGPASGMTPGGPSFSPSAQSDASGMSPSSWSPIRGSP 1550

Query: 1700 KYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGG 1759
                           S +  YSP+SPNY+P S   +  SPSYSP+SP YSP SP  + G 
Sbjct: 1551 SSPGPSMSPYPPSSPSMSPSYSPSSPNYAPNSPGGA--SPSYSPTSPCYSPPSPQYSPGS 1608

Query: 1760 NPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTN 1796
            +     S   +  +  YSP++P YSP S    T  +N
Sbjct: 1609 SNYSPSSPNIHPATQKYSPTSPSYSPMSPMHPTSASN 1645


>gi|343424938|emb|CBQ68476.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
            [Sporisorium reilianum SRZ2]
          Length = 1785

 Score = 1745 bits (4520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 937/1779 (52%), Positives = 1209/1779 (67%), Gaps = 129/1779 (7%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT-ERGKPKPGGLSDPRLGTIDRK 63
            F +S A +  VR VQFGILSP+EIR +SV ++E  E   E GKP+ GGLSDPRLGT+DR 
Sbjct: 9    FAHSTAPIRPVREVQFGILSPEEIRAISVCKVEVPEIKDEAGKPRIGGLSDPRLGTLDRN 68

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE-DDHKFK 122
             KC+TC     ECPGHFGH++LAKP+FHIG++  V  I+  VCF+C K+ AD   D  F 
Sbjct: 69   YKCQTCGEGHQECPGHFGHIDLAKPVFHIGYLGKVKKILECVCFHCGKLKADVVTDPVFD 128

Query: 123  QALKIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE----EPLKKNKGGCGAQQP 176
            Q +K    + K R +++ + C  K  CE     D P +D E    E  K   GGCG  QP
Sbjct: 129  QIVKATRGSRKRRFQRVWEYCSKKMVCEA----DEPKEDDEMGFEEQAKPGHGGCGRIQP 184

Query: 177  KLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
             +  EG+K+  ++K  + +++D E+       K+ L A     +LK++S ED  +LGL+ 
Sbjct: 185  NIRREGLKLFTQWKKGKGEDEDGEENAIAQAEKRPLPASEAHTILKKMSSEDIAVLGLSE 244

Query: 237  KYARPDWMILQVLPIPPPPVRP------SDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            + ARPDWM+L VLP+PPPPVRP       DDLT++LA +IR N  L++ E+ G PAHI++
Sbjct: 245  ENARPDWMVLTVLPVPPPPVRPSVQDGGEDDLTYKLADVIRANATLKKMEQEGTPAHILA 304

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            +F QLLQFH AT+ DN++ GQP+A Q SGRPIKSI +RLK KEGR+RGNLMGKRV+FSAR
Sbjct: 305  DFEQLLQFHCATFMDNDIAGQPQAMQSSGRPIKSIRARLKGKEGRLRGNLMGKRVNFSAR 364

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVIT DP + +D++GVP SIA NLTYPE VTPYN   L ELV  GP+  PG   AKY+IR
Sbjct: 365  TVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRNGPNDYPG---AKYVIR 421

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D G+R+DL+Y  + SD  L+ G+ VERHL DGD+VLFNRQPSLHKMS+M HRIK+M YST
Sbjct: 422  DTGERIDLKY-NRRSDMALQPGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRIKLMDYST 480

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVT PYNADFDGDEMN+HVPQS ETRAE+ ++  VP+ IVSPQ+N+PVMGIVQDT
Sbjct: 481  FRLNLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDT 540

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L G RK + RD  ++      +L+W  D+DG VP P ILKP+P W+GKQ+ ++ IPK IN
Sbjct: 541  LCGIRKFSLRDCLLDYHQVQQVLLWVADWDGVVPMPCILKPKPYWSGKQILSMCIPKGIN 600

Query: 591  LFRTAAWHADNDKGILT--AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            +F       D DKG+      D  V IE GE++ G + KK +G S G LIH+I+ E GP 
Sbjct: 601  VF------LDKDKGLKNNFLKDDGVYIENGEIMYGVINKKVVGASAGGLIHIIFREKGPV 654

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
              ++F    Q +VN+WLL N FSIGIGDT+AD  T ++IN TIS AK+ V + IK A+  
Sbjct: 655  ICKRFFSGVQRVVNFWLLHNGFSIGIGDTVADKATTDSINQTISAAKSAVMDYIKYARHD 714

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             L+ E G T+ ESFE  VN+VLN ARD+ G+ A+ SL + NN+K MV +GSKGSFINISQ
Sbjct: 715  WLKVEAGMTLRESFEANVNRVLNQARDDVGNHAEGSLPDFNNVKQMVVSGSKGSFINISQ 774

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            M+ACVGQQ+VEGKRIPFGF  R+LPHFTKDD+ PESRGFVENSYLRGLT QEFFFHAM G
Sbjct: 775  MSACVGQQSVEGKRIPFGFRHRSLPHFTKDDFTPESRGFVENSYLRGLTAQEFFFHAMAG 834

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRLVKA+ED+MV YDGTVRNS  +VIQF YGEDG+D   +E+
Sbjct: 835  REGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSTNNVIQFAYGEDGIDGAQVET 894

Query: 889  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
            QTL +LK+  ++F   FR ++ +  +     L+  + D    +EL+D+ D E  +LE DR
Sbjct: 895  QTLLTLKLNDADFHHMFRVDLHDGGFKKG-TLRPGLGDWS--QELQDLLDEEFAQLEFDR 951

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
            + L TEI  S      LP+N+ RL+ NAQ+ F +D R+PSD+ P EV+  + ++ +RL V
Sbjct: 952  HLLRTEIFQSDQVQVRLPMNVARLVLNAQQIFHIDQRKPSDLSPAEVIVGLREVLDRLVV 1011

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            + G+DP+S EAQ NATL F I LRS   +K V+++H + +EA+EW++GEIE +F +S+  
Sbjct: 1012 IRGDDPISREAQMNATLLFKIHLRSYLCAKMVIEQHHINKEAWEWILGEIEGQFARSVAN 1071

Query: 1069 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1128
            PGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN A+ IKTPS++V+
Sbjct: 1072 PGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVY 1131

Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1188
            L    N ++E AK +Q AL +TTL++VT A EV YDPDP  T+IEED +FV++++ +PDE
Sbjct: 1132 LTEQYNQSQESAKVIQTALAHTTLQTVTSAVEVHYDPDPSATVIEEDKDFVEAFFAIPDE 1191

Query: 1189 DIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            ++    E+ SPWLLR+EL+R  M+DK L+MA VA KI+  F  D+  + ++DNA+ LILR
Sbjct: 1192 EVEASLERQSPWLLRLELDRAQMLDKNLTMADVASKISAMFGQDIFVMHSEDNAENLILR 1251

Query: 1247 IRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-------------------- 1286
            IR+++++  K    +   E+++FLK + S ML E+ L+G+                    
Sbjct: 1252 IRVVDNDPEK----EAQGEEEIFLKNLASQMLAEIDLKGIKGIKKVYIVQQDNKTRRIDP 1307

Query: 1287 ------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELR 1328
                              NL  V+  E VDA R++ N+ +E+  V GIEA R +LL E R
Sbjct: 1308 VTGDWRTVSEWVLETDGSNLAEVLAVEGVDAIRSSCNNPVEVFRVFGIEAARNSLLRETR 1367

Query: 1329 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1388
             VI FDGSYVNYRHLA+LCD MT +G LMAITRHGINR + G +MRC+FEETV++L++AA
Sbjct: 1368 AVIEFDGSYVNYRHLALLCDIMTSQGALMAITRHGINRTNQGALMRCTFEETVELLIEAA 1427

Query: 1389 VFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI---ELQLPSYMEGLEFGMT 1445
               + D  +GV +N++LGQ+AP+GTG   L L+ +MLK+ I    L   + +        
Sbjct: 1428 SMGDIDDCKGVAQNVLLGQMAPMGTGAFDLNLDLDMLKDTIVNHALPYDTLLASRSLDAA 1487

Query: 1446 PARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPG-------- 1497
              ++P + TPY                 SP +D  F  +   M FSP +  G        
Sbjct: 1488 GGKTPGAMTPYDSS--------------SPASDDAFRVHEQAM-FSPLAQTGGDEGGYND 1532

Query: 1498 --YSPSSP------GYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
               S +SP        SP+  G+SP SPGY PTSPGY+ TSP  +  + +    + G   
Sbjct: 1533 YLLSGTSPMRTPLGAQSPAGYGFSPVSPGYVPTSPGYA-TSPAGALGAMSPWTGNNGLGA 1591

Query: 1550 TSPAYSPTSPSY---------SPTSPSYSPTSPSYSPTSPS---YSPTSPSYSPTSPSY- 1596
            TSPAYSPTSP           SPTSPSYSP SP+YSP+SP+   YSPTSP  SPTSP   
Sbjct: 1592 TSPAYSPTSPRIFGGATSPSYSPTSPSYSPASPNYSPSSPAGAGYSPTSPRMSPTSPVGR 1651

Query: 1597 --SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT--SPSYSPTSPSY 1652
              + TSP YSP SP +SPTSP YSP SPAY+PTSP YSPTSP+ +    +  +SPTSP+Y
Sbjct: 1652 YGAATSPQYSPASPKFSPTSPNYSPASPAYTPTSPVYSPTSPAMAGRGGAKGFSPTSPAY 1711

Query: 1653 SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
            SPTSP YSP SPA+SPTSP YSP SP YSPTSP YSPTS
Sbjct: 1712 SPTSPQYSPASPAFSPTSPQYSPASPQYSPTSPQYSPTS 1750



 Score =  147 bits (370), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 110/235 (46%), Positives = 136/235 (57%), Gaps = 50/235 (21%)

Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
            S TSP  +P   + SP    +SP SP Y PTSP Y+ TSPA +  + S    +     TS
Sbjct: 1536 SGTSPMRTPLG-AQSPAGYGFSPVSPGYVPTSPGYA-TSPAGALGAMSPWTGNNGLGATS 1593

Query: 1643 PSYSPTSPSY----------------SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
            P+YSPTSP                  SP SP+YSP+SPA      GYSPTSP  SPTSP 
Sbjct: 1594 PAYSPTSPRIFGGATSPSYSPTSPSYSPASPNYSPSSPA----GAGYSPTSPRMSPTSPV 1649

Query: 1687 Y---SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTS---------SS 1733
                + TSP Y+P S K+SP+      SP  SPASP Y+PTSP YSPTS           
Sbjct: 1650 GRYGAATSPQYSPASPKFSPT------SPNYSPASPAYTPTSPVYSPTSPAMAGRGGAKG 1703

Query: 1734 YSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSS 1787
            +SPTSP+YSP+SP YSP+SP         +SP+SPQYSP++  YSP++P YSP+S
Sbjct: 1704 FSPTSPAYSPTSPQYSPASPA--------FSPTSPQYSPASPQYSPTSPQYSPTS 1750



 Score =  134 bits (336), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 103/214 (48%), Positives = 130/214 (60%), Gaps = 35/214 (16%)

Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
            S TSP  +P   A SP    +SP SP Y PTSP Y+ TSP+ +  + S    +     TS
Sbjct: 1536 SGTSPMRTPLG-AQSPAGYGFSPVSPGYVPTSPGYA-TSPAGALGAMSPWTGNNGLGATS 1593

Query: 1664 PAYSPTSP---------GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
            PAYSPTSP          YSPTSPSYSP SP YSP+SP+             YSP+SPR+
Sbjct: 1594 PAYSPTSPRIFGGATSPSYSPTSPSYSPASPNYSPSSPA----------GAGYSPTSPRM 1643

Query: 1715 SPASP-----------YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAG-GGNPD 1762
            SP SP           YSP SP +SPTS +YSP SP+Y+P+SP YSP+SP  AG GG   
Sbjct: 1644 SPTSPVGRYGAATSPQYSPASPKFSPTSPNYSPASPAYTPTSPVYSPTSPAMAGRGGAKG 1703

Query: 1763 YSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTPQT 1795
            +SP+SP YSP++  YSP++P +SP+S  QY+P +
Sbjct: 1704 FSPTSPAYSPTSPQYSPASPAFSPTS-PQYSPAS 1736



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 48/113 (42%), Gaps = 39/113 (34%)

Query: 1714 LSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPS--------SPYNAGGG----NP 1761
            LS  SP        SP    +SP SP Y P+SP Y+ S        SP+    G    +P
Sbjct: 1535 LSGTSPMRTPLGAQSPAGYGFSPVSPGYVPTSPGYATSPAGALGAMSPWTGNNGLGATSP 1594

Query: 1762 DYSPSSPQ-----------------------YSPS----AGYSPSAPGYSPSS 1787
             YSP+SP+                       YSPS    AGYSP++P  SP+S
Sbjct: 1595 AYSPTSPRIFGGATSPSYSPTSPSYSPASPNYSPSSPAGAGYSPTSPRMSPTS 1647


>gi|120561201|gb|ABM26986.1| RNA polymerase II largest subunit, partial [Pichia kudriavzevii]
          Length = 1647

 Score = 1744 bits (4517), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 919/1671 (54%), Positives = 1171/1671 (70%), Gaps = 115/1671 (6%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH-KFKQALKIRNPKNRLKKILDA 140
            H+ELAKP+FHIGF+  +  +   +C NC KIL DE+ + +++ A+KIR+PK R   +   
Sbjct: 1    HIELAKPVFHIGFLAKIKKVCECICMNCGKILLDENTNPQYRAAIKIRDPKKRFNAVWTL 60

Query: 141  CKNKTKCEGGDEIDVPGQDGEEPLKKNK-GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            CK K  C+     D    + +E + +++ GGCG+ QP +  +G+K+   +K   K N D+
Sbjct: 61   CKTKMVCDVDPPEDSDDDEDDEGIHRHRRGGCGSVQPSIRKDGLKLWGTWK---KSNVDE 117

Query: 200  EQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV--- 256
            E   E +ER+Q +TA  +L V + IS EDC  LG N ++ARP+WM+L VLP+PPPPV   
Sbjct: 118  ET--ENLERRQ-ITASDILNVFRHISPEDCHRLGFNEEWARPEWMLLTVLPVPPPPVRPS 174

Query: 257  -------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELP 309
                   R  DDLT++LA I++ N N+++ E +G+P H+ISEF  LLQ+H+ATY DN++ 
Sbjct: 175  VAFTDSKRSEDDLTYKLADILKANINVQKFEMDGSPQHVISEFEALLQYHVATYMDNDIA 234

Query: 310  GQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWS 369
            GQP+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP + +DQ+GVP S
Sbjct: 235  GQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPRS 294

Query: 370  IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHL 429
            IA  LTYPE VTPYNI++L E+V  GP+  PG   AKY+IR++G R+DLR+ K++ D  L
Sbjct: 295  IARTLTYPEIVTPYNIQKLTEMVRNGPNEHPG---AKYVIRENGDRIDLRFNKRAGDIQL 351

Query: 430  ELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDE 489
            + G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFR+NLSVTSPYNADFDGDE
Sbjct: 352  QYGWKVERHLMDNDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRMNLSVTSPYNADFDGDE 411

Query: 490  MNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVF 549
            MN+HVPQS+ETRAE+ EL  VP  I+SPQSN+PVMGIVQDTL G RK+T RDTFIE D  
Sbjct: 412  MNLHVPQSYETRAELSELCAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYDQV 471

Query: 550  MNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAG 609
            MN+  W  D+DG VPQP ILKP+PLW+GKQ+ +L IP  I L R        D  + +  
Sbjct: 472  MNMCYWIPDWDGVVPQPAILKPKPLWSGKQILSLCIPNGIFLQRL-------DGSLTSPK 524

Query: 610  DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
            D+ + I  GE++ G + K T+G S G LIH    E GP    K  G+ Q +VNYWLL N 
Sbjct: 525  DSGMLIVNGEIMFGVVNKATVGASAGGLIHTTMREKGPTTCAKMFGNIQKVVNYWLLHNG 584

Query: 670  FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
            FSIGIGD IAD +TM+TI +TI +AK+ V+ +I++AQ   LE EPG T+ ESFE KV+++
Sbjct: 585  FSIGIGDAIADPETMKTITETIKEAKDKVQTVIREAQKNLLEAEPGMTLRESFEQKVSKI 644

Query: 730  LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
            LN ARD AG SA+ SL +SNN+K MVTAGSKGS+INISQM+ACVGQQ VEGKRI FGF D
Sbjct: 645  LNEARDAAGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFAD 704

Query: 790  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 849
            R+LPHFT DDY  ES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRL
Sbjct: 705  RSLPHFTTDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRL 764

Query: 850  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM 909
            +KA+EDIMV YDGT RNSLGDVIQF+YGEDG+D+  +E QT+D++    + F+K +R ++
Sbjct: 765  LKALEDIMVHYDGTTRNSLGDVIQFIYGEDGLDATTVEKQTVDTIPGSNAAFEKKYRVDL 824

Query: 910  DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNL 969
             +E  +    + EY  ++    +L+ + D E ++L  DR  L T +   G+++WPLPVN+
Sbjct: 825  MDEKKSIRPDVVEYGSEILGDIKLQKILDEEYEQLLKDREYLRTVVFPDGENNWPLPVNV 884

Query: 970  KRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNI 1029
            +R++ NAQ+ F VD  + SD+   E+V++V +L ++  VV G+     EA++N+TL F  
Sbjct: 885  RRIVQNAQQIFHVDRYKASDLTIEEIVKSVQELCKKFTVVRGDGGCLTEARENSTLLFQC 944

Query: 1030 LLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1089
            L+RS  A++RVL+E++L ++AFEWV+G I  +F +SLV PGEM+G VAAQSIGEPATQMT
Sbjct: 945  LIRSKLATRRVLEEYKLNKDAFEWVVGTIAQQFARSLVNPGEMVGVVAAQSIGEPATQMT 1004

Query: 1090 LNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEY 1149
            LNTFHYAGVS+KNVTLGVPRL+EI+NVAK  KTP+L+V+L+    +  E+AK++Q A+E+
Sbjct: 1005 LNTFHYAGVSSKNVTLGVPRLKEILNVAKNFKTPALTVYLEEEYATDIEKAKSIQSAIEH 1064

Query: 1150 TTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAP--EKISPWLLRIELNRE 1207
            T+L++VT  TE++YDPDP  T+IEED + V++Y+ +PDE +     K SPWLLR+EL+R 
Sbjct: 1065 TSLKNVTACTEIYYDPDPRTTVIEEDFDTVEAYFAIPDEKVEENLHKQSPWLLRLELDRA 1124

Query: 1208 MMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDD 1267
             M+DK+LSM  VA KI + F DDL  I+++DNADKL++R RI+ +E    E  +++ +  
Sbjct: 1125 KMLDKQLSMQQVAAKIMENFGDDLFVIWSEDNADKLVIRCRIVREEKALDEEEEDTEDG- 1183

Query: 1268 VFLKKIESNMLTEMALRGV-----------------------------------NLLAVM 1292
              LK +E+ ML  + LRGV                                   NL  V+
Sbjct: 1184 -LLKALEAQMLESITLRGVSGISRVFMMKYDKTYIAEDGDFAKKQEWVLETDGINLADVI 1242

Query: 1293 CHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTY 1352
              E +D  RT SN  +EI+ V GIEA R AL  E+  VI+FDGSYVNYRHLA+L D MTY
Sbjct: 1243 TVEGIDTTRTYSNSFVEILFVFGIEAARSALYKEILNVIAFDGSYVNYRHLALLVDLMTY 1302

Query: 1353 RGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIG 1412
            +GHL+AI+RHG NRNDTG +MRCSFEETV+IL DA   AE D   GV++NI+LGQ+AP G
Sbjct: 1303 KGHLIAISRHGFNRNDTGALMRCSFEETVEILFDAGASAELDTCDGVSQNIILGQMAPFG 1362

Query: 1413 TGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSP--- 1469
            TG   +YL+DE L       LPS    ++   T   +  S T Y D       +  P   
Sbjct: 1363 TGSFDVYLDDEKLA-----ALPS-ENPVDVISTAKDTKGSMTVYGDDHFKDDIIDIPMAA 1416

Query: 1470 -NLRLSPVTDA--------QFSPYVGG--MAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG 1518
             N+  SP+  A         F+ Y  G   A+ PTS  GY  +SP Y P+SP Y PTSP 
Sbjct: 1417 DNVAFSPLITAGSGDDRSGGFTEYGSGNMSAYQPTSPFGYGATSPSYGPTSPSYGPTSPS 1476

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS----------- 1567
            YSPTSP YSPTSP YSPTSP YSP+SP YSPTSPAYSPTSP+YSPTSP+           
Sbjct: 1477 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT 1536

Query: 1568 -----------------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
                             YSPTSPSYSPTSP YSPTSP YSPTSP YSPTSP YSPTSP Y
Sbjct: 1537 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY 1596

Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
            SPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSPSYSP
Sbjct: 1597 SPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPSYSP 1647



 Score =  199 bits (507), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 125/209 (59%), Positives = 143/209 (68%), Gaps = 39/209 (18%)

Query: 1616 AYSPTSP-AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 1674
            AY PTSP  Y  TSPSY PTSPSY PTSPSYSPTSP+YSPTSP+YSPTSPAYSPTSP YS
Sbjct: 1447 AYQPTSPFGYGATSPSYGPTSPSYGPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1506

Query: 1675 PTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA---------------------------- 1706
            PTSP+YSPTSP YSPTSP+Y+P S  YSP+                              
Sbjct: 1507 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1566

Query: 1707 -YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSP 1765
             YSP+SP+      YSPTSP YSPTS  YSPTSP YSP+SP YSP+SP      +P YSP
Sbjct: 1567 QYSPTSPQ------YSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSP-QYSPTSPQYSP 1619

Query: 1766 SSPQYSPSA-GYSPSAPGYSPSSTSQYTP 1793
            +SPQYSP++  YSP++P YSP+S S Y+P
Sbjct: 1620 TSPQYSPTSPQYSPTSPQYSPTSPS-YSP 1647


>gi|119112579|ref|XP_317690.3| AGAP007810-PA [Anopheles gambiae str. PEST]
 gi|116123421|gb|EAA12308.3| AGAP007810-PA [Anopheles gambiae str. PEST]
          Length = 1878

 Score = 1744 bits (4517), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 908/1670 (54%), Positives = 1161/1670 (69%), Gaps = 127/1670 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I++ ET E G+PK  GL DPR G I+R  +
Sbjct: 6    SKAPLRLVKRVQFGILSPDEIRRMSVTEGGIQYAETMEGGRPKLCGLMDPRQGVIERTSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPQNPKIKEIV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDV---PGQDGEEPLKKNKGGCGAQQPKLTI 180
            LK +  P+ RL  + D CK K  CEGG+++D+   P  DG +  K+  GGCG  QP +  
Sbjct: 126  LKSKGQPRKRLAYVYDLCKGKKICEGGEDMDMSKEPTADGAK--KQGHGGCGHYQPSIRR 183

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ ++AE+K     ND+ +      E+K  ++AERV  +LK I+DE+C +LG++PK+AR
Sbjct: 184  TGLDLMAEWK---DVNDENQ------EKKIQVSAERVYEILKHITDEECFVLGMDPKFAR 234

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  L++ E  GA AH+I+
Sbjct: 235  PDWMIITVLPVPPLAVRPAVVMFGATKNQDDLTHKLSDIIKANNELKKNEATGAAAHVIA 294

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG P+A Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 295  ENIKMLQFHVATLVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 354

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP S+A N+T+PE VTP+NI+R++ELV  G    PG   AKYI+R
Sbjct: 355  TVITPDPNLRIDQVGVPRSVAQNMTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVR 411

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 412  DNGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST 471

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+HVPQS ETRAE+  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 472  FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHITPRQIITPQANKPVMGIVQDT 531

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD FIEK+  MN+LM+   +DGK+PQP ILKP+PLWTGKQ+F LIIP  +N
Sbjct: 532  LTAVRKMTKRDVFIEKEQMMNLLMFLPTWDGKMPQPAILKPKPLWTGKQIFTLIIPGNVN 591

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D  D G    ++ GDT V +E G+L+ G LCKKTLGTS GSL+H+++ E+G
Sbjct: 592  MIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGDLIMGILCKKTLGTSAGSLLHIVFLELG 651

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             + A +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A 
Sbjct: 652  HEIAGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYAEIQRAIKKAKEDVIGVIQKAH 711

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 712  NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 771

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 772  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYFHAM 831

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 832  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETV 891

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E Q L ++K+    F+K +RF+   E        ++ I +L     +    +AE ++L  
Sbjct: 892  EFQNLPTIKLSNKVFEKRYRFDPTNERTLRRIFNEDVIKELTETSSVIQEIEAEYEQLLR 951

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L  +I  +GDS   LP NL+R+IWN QK F ++ R P+D+ P++V++ V  L +R 
Sbjct: 952  DREAL-RQIFPNGDSKVVLPCNLQRMIWNVQKIFHINKRSPTDLSPLKVIQGVRDLLQRC 1010

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +V G D LS +A +NATL F  L+RST  +K V +E RL  EAFEW+IGEIE+RF Q+ 
Sbjct: 1011 VIVAGTDRLSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGEIETRFQQAQ 1070

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
              PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+
Sbjct: 1071 CNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLT 1130

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMP
Sbjct: 1131 VFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVIAEDQEFVNVYYEMP 1190

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNADKL+LR
Sbjct: 1191 DFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNADKLVLR 1248

Query: 1247 IRIMNDE---APKGELNDESAEDDVFLKKIESNMLTEMALRGV----------------- 1286
            IRIMN++       E N +  EDD+FL+ IE+NML++M L+G+                 
Sbjct: 1249 IRIMNEDNKFQENEEENMDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKK 1308

Query: 1287 -----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
                                   +++ V+   DVD  RT SN + EI  VLGIEAVR+++
Sbjct: 1309 RIVITPEGEFKPIGEWLLETDGTSMMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSV 1368

Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
              E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+
Sbjct: 1369 EKEMNNVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1428

Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFG 1443
            L DAA  AE D +RGV+ENI+LGQL  +GTG   L L+ E  K  +E+   S + G    
Sbjct: 1429 LNDAAAHAEVDPMRGVSENIILGQLPRMGTGCFDLLLDAEKCKLGMEIPHTSILGGTGMF 1488

Query: 1444 MTPARSPVSGTPYHDGMMSPGY-LFSPNLRLSPVTDAQFSPYVGGMAFSPTS---SPGYS 1499
               A +P S TP+     +PGY  +SP+   S +T        GG +FSP++   + G S
Sbjct: 1489 FGSAATP-SMTPWQQS-ATPGYGGWSPSGPASGMTP-------GGPSFSPSAQSDASGMS 1539

Query: 1500 PSSPGYSP----------------------------SSPGYSPTSPGYSPTSPGYSPTSP 1531
            PSS  +SP                            SSP Y+P SPG +  SP YSPTSP
Sbjct: 1540 PSS--WSPIRGSPSSPGPSMSPYPPSSPSMSPSYSPSSPNYAPNSPGGA--SPSYSPTSP 1595

Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1581
            GYSP SP YSP S  YSP+SP     + +YSPTSPSYSP SP + PTS S
Sbjct: 1596 GYSPPSPQYSPGSSNYSPSSPNIHSATQNYSPTSPSYSPMSPMH-PTSAS 1644



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/155 (40%), Positives = 85/155 (54%), Gaps = 35/155 (22%)

Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPS-YSPTSP-SYSPT---- 1599
            S  +P+ +P   S +P    +SP+ P+   +P  PS+SP++ S  S  SP S+SP     
Sbjct: 1491 SAATPSMTPWQQSATPGYGGWSPSGPASGMTPGGPSFSPSAQSDASGMSPSSWSPIRGSP 1550

Query: 1600 ------------------------SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
                                    SP+Y+P SP  +  SP+YSPTSP YSP SP YSP S
Sbjct: 1551 SSPGPSMSPYPPSSPSMSPSYSPSSPNYAPNSPGGA--SPSYSPTSPGYSPPSPQYSPGS 1608

Query: 1636 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
             +YSP+SP+    + +YSPTSPSYSP SP + PTS
Sbjct: 1609 SNYSPSSPNIHSATQNYSPTSPSYSPMSPMH-PTS 1642



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 90/160 (56%), Gaps = 33/160 (20%)

Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPA--YSPTSPAYSPTSPS-YSPTSP-SYSPT---- 1641
            S  +PS +P   S +P    +SP+ PA   +P  P++SP++ S  S  SP S+SP     
Sbjct: 1491 SAATPSMTPWQQSATPGYGGWSPSGPASGMTPGGPSFSPSAQSDASGMSPSSWSPIRGSP 1550

Query: 1642 -----------------SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
                             SPSYSP+SP+Y+P SP  +  SP+YSPTSPGYSP SP YSP S
Sbjct: 1551 SSPGPSMSPYPPSSPSMSPSYSPSSPNYAPNSPGGA--SPSYSPTSPGYSPPSPQYSPGS 1608

Query: 1685 PTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTS 1724
              YSP+SP+       +S +  YSP+SP  SP SP  PTS
Sbjct: 1609 SNYSPSSPNI------HSATQNYSPTSPSYSPMSPMHPTS 1642



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/157 (35%), Positives = 79/157 (50%), Gaps = 8/157 (5%)

Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSP--GYSPTSPSYSPTSPT----YSPTSPSYNPQSA 1699
            S  +PS +P   S +P    +SP+ P  G +P  PS+SP++ +     SP+S S    S 
Sbjct: 1491 SAATPSMTPWQQSATPGYGGWSPSGPASGMTPGGPSFSPSAQSDASGMSPSSWSPIRGSP 1550

Query: 1700 KYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGG 1759
                           S +  YSP+SPNY+P S   +  SPSYSP+SP YSP SP  + G 
Sbjct: 1551 SSPGPSMSPYPPSSPSMSPSYSPSSPNYAPNSPGGA--SPSYSPTSPGYSPPSPQYSPGS 1608

Query: 1760 NPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTN 1796
            +     S   +S +  YSP++P YSP S    T  +N
Sbjct: 1609 SNYSPSSPNIHSATQNYSPTSPSYSPMSPMHPTSASN 1645


>gi|324120542|dbj|BAJ78662.1| RNA polymerase II largest subunit [Oyamia lugubris]
          Length = 1742

 Score = 1743 bits (4514), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 911/1692 (53%), Positives = 1160/1692 (68%), Gaps = 143/1692 (8%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ---IEHGETTERGKPKPGGLSDPRLGTIDRKM 64
            S A +  V+ VQFGILSPDEIR+MSV     I   ET E G+PK GGL DPR G +DR  
Sbjct: 6    SKAPLRMVKKVQFGILSPDEIRRMSVTDGGGIRFPETYEGGRPKIGGLMDPRQGVMDRNS 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            +C+TC  N  ECPGHFGH+EL KP+FHIGF+   + I+R VCF CSK+L   ++ K ++ 
Sbjct: 66   RCQTCAGNQTECPGHFGHIELGKPVFHIGFITKTIKILRCVCFYCSKMLVSPNNPKIREV 125

Query: 125  LKIRNPKNR--LKKILDACKNKTKCEGGDEIDVPGQDGEEP-LKKNK----GGCGAQQPK 177
            ++    +NR  L  + D CK +  CEGGDE+D+   + ++P L+KN+    GGCG  QP 
Sbjct: 126  VQKSKGQNRKRLAYVYDLCKGRNICEGGDEMDIQKDNPDDPSLQKNQKQGHGGCGRYQPS 185

Query: 178  LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
            +   G+ + AE+K     N+D +      E+K  L+AERV  +LK I+DE+C+ LG++P+
Sbjct: 186  IRRSGLDLTAEWK---HVNEDSQ------EKKIVLSAERVWEILKHITDEECRTLGMDPQ 236

Query: 238  YARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAH 287
            +ARPDWMI+ VLP+PP  VRP+          DDLTH+LA II+ N  L R E+ GA AH
Sbjct: 237  FARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKSNNELIRNEQAGAAAH 296

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            I+SE  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I SRLK KEGRIRGNLMGKRVDF
Sbjct: 297  ILSENVKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKRVDF 356

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVITPDP + IDQ+GVP SIA N+T+PE VTP+N +++ ELV  G    PG   AKY
Sbjct: 357  SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNFDKMHELVRRGNSQYPG---AKY 413

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            I+RD+G+R+DLR+  KSSD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P
Sbjct: 414  IVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLP 473

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            +STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIV
Sbjct: 474  WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIV 533

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL   RK+TKRD FIEK+  MN+LM+   +DGK+PQP ILKP+PLWTGKQVF+LIIP 
Sbjct: 534  QDTLTAVRKMTKRDVFIEKEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPG 593

Query: 588  QINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
             +N+ RT + H D+ D+G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + 
Sbjct: 594  NVNMIRTHSTHPDDEDEGPYKWISPGDTKVMVEHGELMMGILCKKTLGTSAGSLLHICYL 653

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
            E+G +   +F G+ Q ++N WLL    SIGIGDTIAD  T   I   I KAK +V  +I+
Sbjct: 654  ELGHEVCGQFYGNIQTVINNWLLLEGHSIGIGDTIADPNTYMEIQKAIKKAKEDVIEVIQ 713

Query: 704  QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
            +A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS 
Sbjct: 714  KAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSN 773

Query: 764  INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
            INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+F
Sbjct: 774  INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYF 833

Query: 824  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
            HAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+  
Sbjct: 834  HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAG 893

Query: 884  VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
              +E Q L ++K+    F++ F+F+   E        ++ + +L    E+    + E  +
Sbjct: 894  ETVEFQNLPTVKLSNKAFERRFKFDPTNERHLRRVFNEDVLRELMGSGEVISDLEKEWDQ 953

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            L  DR  L  +I  SG+S   LP NL R+IWN QK F ++ R P+D+ P+ V+E V  L 
Sbjct: 954  LCKDRETL-RQIFPSGESKVVLPCNLNRMIWNVQKIFHINKRAPTDLSPLRVIEGVTNLL 1012

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
            ++  +V GED LS  A +NATL F  L+RST  SK V ++ RL+ EAFEW+IGEIE+RF 
Sbjct: 1013 KKCVIVAGEDHLSKMANENATLLFQCLIRSTLCSKCVSEDFRLSSEAFEWLIGEIETRFQ 1072

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            Q+ VAPGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K P
Sbjct: 1073 QAQVAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAP 1132

Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
            SL+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I+ED EFV  YY
Sbjct: 1133 SLTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIQEDQEFVNVYY 1192

Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
            EMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL
Sbjct: 1193 EMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1250

Query: 1244 ILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV-------------- 1286
            +LRIRIMN E    +  +E+    EDD+FL+ IE+NML++M L+G+              
Sbjct: 1251 VLRIRIMNSEDKFQQEEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTD 1310

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                      +++ V+   DVD  RT SN + EI  VLGIEAVR
Sbjct: 1311 SKKRIVITESGEFKAIAEWLLETDGTSMMKVLSERDVDPIRTFSNDICEIFSVLGIEAVR 1370

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
            +++  E+  V++F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEET
Sbjct: 1371 KSVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1430

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            VD+L+DAA  AE D + GV+ENI++GQL  +GTG   L L++E  K  IE+ +      +
Sbjct: 1431 VDVLMDAAAHAEMDPMAGVSENIIMGQLPRLGTGCFDLLLDEEKCKAGIEIPMSVGAGMM 1490

Query: 1441 EF-------GMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPT 1493
                       TP+ SP   TP++    + G ++SP                G M  S  
Sbjct: 1491 GGAGMFFGSAATPSMSP-QMTPWNHSTPAYGSVWSP----------------GNMLGS-- 1531

Query: 1494 SSPGYSPSSPGYSPS-SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP 1552
               G +P  P +SPS +   S  SPGYSP    +SP  PG        SP SPG     P
Sbjct: 1532 ---GMTPGGPSFSPSGASDASGLSPGYSP---AWSP-QPG--------SPGSPG-----P 1571

Query: 1553 AYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
            A SP  PS    TSPSYSP+SP++ P SPS               +P SP+YSPTSP YS
Sbjct: 1572 AMSPYIPSPIGGTSPSYSPSSPAFQPASPSVG-------------TPNSPNYSPTSPTYS 1618

Query: 1612 PTSPAYSPTSPA 1623
            PTSP YSPTSP 
Sbjct: 1619 PTSPNYSPTSPG 1630



 Score = 80.5 bits (197), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 85/142 (59%), Gaps = 13/142 (9%)

Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPT 1592
            S  +P+ SP    ++ ++PAY       +      +P  PS+SP+  S  S  SP YSP 
Sbjct: 1499 SAATPSMSPQMTPWNHSTPAYGSVWSPGNMLGSGMTPGGPSFSPSGASDASGLSPGYSP- 1557

Query: 1593 SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA-YSPTSPSYSPTSPSYSPTSPSY-SPTSP 1650
              ++SP      P SP  SP  PA SP  P+    TSPSYSP+SP++ P SPS  +P SP
Sbjct: 1558 --AWSP-----QPGSPG-SP-GPAMSPYIPSPIGGTSPSYSPSSPAFQPASPSVGTPNSP 1608

Query: 1651 SYSPTSPSYSPTSPAYSPTSPG 1672
            +YSPTSP+YSPTSP YSPTSPG
Sbjct: 1609 NYSPTSPTYSPTSPNYSPTSPG 1630



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/134 (44%), Positives = 79/134 (58%), Gaps = 6/134 (4%)

Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA-YSPTSPAYSPT 1620
            S  +PS SP    ++ ++P+Y       +      +P  PS+SP+  +  S  SP YSP 
Sbjct: 1499 SAATPSMSPQMTPWNHSTPAYGSVWSPGNMLGSGMTPGGPSFSPSGASDASGLSPGYSP- 1557

Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPAY-SPTSPGYSPTSP 1678
              A+SP   S     P+ SP  PS    TSPSYSP+SP++ P SP+  +P SP YSPTSP
Sbjct: 1558 --AWSPQPGSPGSPGPAMSPYIPSPIGGTSPSYSPSSPAFQPASPSVGTPNSPNYSPTSP 1615

Query: 1679 SYSPTSPTYSPTSP 1692
            +YSPTSP YSPTSP
Sbjct: 1616 TYSPTSPNYSPTSP 1629



 Score = 79.0 bits (193), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 64/135 (47%), Positives = 83/135 (61%), Gaps = 8/135 (5%)

Query: 1520 SPTSPGYSPTSPGYSPTSPTY-SPSSPGYSPTSPAYSPTSPSYSPTSPS-YSPTSPSYSP 1577
            S  +P  SP    ++ ++P Y S  SPG    S   +P  PS+SP+  S  S  SP YSP
Sbjct: 1499 SAATPSMSPQMTPWNHSTPAYGSVWSPGNMLGS-GMTPGGPSFSPSGASDASGLSPGYSP 1557

Query: 1578 TSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPAYSPTSPAYSPTSPAY-SPTSPSYSPTS 1635
               ++SP   S     P+ SP  PS    TSP+YSP+SPA+ P SP+  +P SP+YSPTS
Sbjct: 1558 ---AWSPQPGSPGSPGPAMSPYIPSPIGGTSPSYSPSSPAFQPASPSVGTPNSPNYSPTS 1614

Query: 1636 PSYSPTSPSYSPTSP 1650
            P+YSPTSP+YSPTSP
Sbjct: 1615 PTYSPTSPNYSPTSP 1629



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/145 (41%), Positives = 75/145 (51%), Gaps = 18/145 (12%)

Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS-YSPTSPSYSPT 1648
            S  +PS SP    ++ ++PAY       +      +P  PS+SP+  S  S  SP YSP 
Sbjct: 1499 SAATPSMSPQMTPWNHSTPAYGSVWSPGNMLGSGMTPGGPSFSPSGASDASGLSPGYSP- 1557

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG-YSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY 1707
              ++SP   S     PA SP  P     TSPSYSP+SP + P SPS              
Sbjct: 1558 --AWSPQPGSPGSPGPAMSPYIPSPIGGTSPSYSPSSPAFQPASPSVG------------ 1603

Query: 1708 SPSSPRLSPASP-YSPTSPNYSPTS 1731
            +P+SP  SP SP YSPTSPNYSPTS
Sbjct: 1604 TPNSPNYSPTSPTYSPTSPNYSPTS 1628



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 74/132 (56%), Gaps = 6/132 (4%)

Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA-YSPTSPSYSPT 1634
            S  +PS SP    ++ ++P+Y       +      +P  P++SP+  +  S  SP YSP 
Sbjct: 1499 SAATPSMSPQMTPWNHSTPAYGSVWSPGNMLGSGMTPGGPSFSPSGASDASGLSPGYSP- 1557

Query: 1635 SPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPAYSPTSPGYSPTSPSY-SPTSPTYSPTSP 1692
              ++SP   S     P+ SP  PS    TSP+YSP+SP + P SPS  +P SP YSPTSP
Sbjct: 1558 --AWSPQPGSPGSPGPAMSPYIPSPIGGTSPSYSPSSPAFQPASPSVGTPNSPNYSPTSP 1615

Query: 1693 SYNPQSAKYSPS 1704
            +Y+P S  YSP+
Sbjct: 1616 TYSPTSPNYSPT 1627


>gi|324120558|dbj|BAJ78670.1| RNA polymerase II largest subunit [Gynaikothrips ficorum]
          Length = 1687

 Score = 1741 bits (4510), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 903/1661 (54%), Positives = 1161/1661 (69%), Gaps = 114/1661 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I++ ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRCVKRVQFGILSPDEIRRMSVTEGGIKYPETMEGGRPKLGGLMDPRQGVIDRSSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L   ++ K K+ +
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPNNPKIKEVV 125

Query: 126  KIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQD-----GEEPLKKNKGGCGAQQPKL 178
                  P+ RL  + D CK K  CEGGDE+DV  ++      E+P K+  GGCG  QP L
Sbjct: 126  MKSKGQPRKRLTFVYDLCKGKNICEGGDEMDVNKENVDDPNKEQPRKQGHGGCGRYQPNL 185

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
               G+ + AE+K     N+D +      E+K  LTAERV  +LK I DE+C +LG++PKY
Sbjct: 186  RRVGLDVTAEWK---HVNEDSQ------EKKINLTAERVWEILKHIIDEECFILGMDPKY 236

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARPDWMI+ VLP+PP  VRP+          DDLTH+LA I++ N  L R E+ G  AH+
Sbjct: 237  ARPDWMIVTVLPVPPLCVRPAVVMYGSARNQDDLTHKLADILKANNELVRNEQAGTAAHV 296

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ++E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFS
Sbjct: 297  LAENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 356

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVITPDP + IDQ+GVP SIA N+T+PE VTP+N+++++ELV  G    PG   AKYI
Sbjct: 357  ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNMDKMQELVRRGNSQYPG---AKYI 413

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            +RD+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+
Sbjct: 414  VRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPW 473

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQ
Sbjct: 474  STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQ 533

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL   RK+TKRD F+EK+  M +LM+   +DGK+PQP ILKP+PLWTGKQ+F+LIIP  
Sbjct: 534  DTLTAVRKMTKRDVFLEKEQMMTLLMFLPIWDGKMPQPCILKPKPLWTGKQIFSLIIPGN 593

Query: 589  INLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
            +N+ RT + H D+ D+G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+I+ E
Sbjct: 594  VNMIRTHSTHPDDEDEGPYKWISPGDTKVMVEHGELIKGILCKKTLGTSAGSLLHIIFLE 653

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
            +G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++
Sbjct: 654  LGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQK 713

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS I
Sbjct: 714  AHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNI 773

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FH
Sbjct: 774  NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFH 833

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YD TVRNS+G +IQ  YGEDG+   
Sbjct: 834  AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDSTVRNSVGQLIQLRYGEDGLCGE 893

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
             +E Q+L ++K+   +F++ F+F+   +        +E I +L    ++    D E ++L
Sbjct: 894  TVEFQSLSTVKLSNKQFERKFKFDPTNDRNLRRVFNEEVIKELMGSGDVVQELDNEWEQL 953

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
              DR ++  +I  SG++   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V  L E
Sbjct: 954  CRDR-EILRQIFPSGENKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIKGVKDLLE 1012

Query: 1005 RLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
            +  +V G+D LS  A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q
Sbjct: 1013 KCVIVAGDDHLSKMANENATLLFQCLVRSTLCTKSVSEEFRLSTEAFEWLIGEIETRFQQ 1072

Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS 1124
            +  APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PS
Sbjct: 1073 AQCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132

Query: 1125 LSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
            L+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I++D EFV  YYE
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIKDDQEFVNVYYE 1192

Query: 1185 MPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            MPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNA+KL+
Sbjct: 1193 MPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGEDLNCIFNDDNAEKLV 1250

Query: 1245 LRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV--------------- 1286
            LRIRIMN +  K +  +E     EDD+FL+ IE+NML++M L+G+               
Sbjct: 1251 LRIRIMNSDDNKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1310

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     +L+ V+   DVD  RT SN + EI +VLGIEAVR+
Sbjct: 1311 KKRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRK 1370

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLE 1441
            D+LLDAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  IE+          
Sbjct: 1431 DVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKYGIEI---------- 1480

Query: 1442 FGMTPARSPVSGTPYHDGM-MSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSP 1500
                         P + G+ MS G +F      +P T  Q +P+  G A        +SP
Sbjct: 1481 -------------PMNLGVGMSTGLMFGS--AATPSTSPQRTPWAQG-ATPLYGQSMWSP 1524

Query: 1501 SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS 1560
               G +P  P +SP+  G S TS G SP   G+SP  P  SP SPG + +    SP S  
Sbjct: 1525 GGSGMTPGCPSFSPS--GSSDTS-GMSPGYSGWSP--PMASPGSPGQAMSPYLGSPHS-G 1578

Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1601
            +SP++ SY+PTSPS +P S SYSPTSPSYSPTSP YSPTSP
Sbjct: 1579 FSPSNMSYAPTSPSMTPNSHSYSPTSPSYSPTSPQYSPTSP 1619



 Score = 57.4 bits (137), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 7/128 (5%)

Query: 1590 SPTSPSYSPT-SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS-YSPTSPSYSP 1647
            S  +PS SP  +P     +P Y  +   +SP     +P  PS+SP+  S  S  SP YS 
Sbjct: 1496 SAATPSTSPQRTPWAQGATPLYGQS--MWSPGGSGMTPGCPSFSPSGSSDTSGMSPGYSG 1553

Query: 1648 TSP-SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS-PSYNPQSAKYSPSL 1705
             SP   SP SP  + +    SP S G+SP++ SY+PTSP+ +P S        +    S 
Sbjct: 1554 WSPPMASPGSPGQAMSPYLGSPHS-GFSPSNMSYAPTSPSMTPNSHSYSPTSPSYSPTSP 1612

Query: 1706 AYSPSSPR 1713
             YSP+SP+
Sbjct: 1613 QYSPTSPQ 1620



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 72/136 (52%), Gaps = 15/136 (11%)

Query: 1621 SPAYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPT-SPAYSPTSPGYSPTS 1677
            S A   TSP  +P +   +P      +SP     +P  PS+SP+ S   S  SPGYS  S
Sbjct: 1496 SAATPSTSPQRTPWAQGATPLYGQSMWSPGGSGMTPGCPSFSPSGSSDTSGMSPGYSGWS 1555

Query: 1678 PSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPT 1737
            P      P  SP SP         SP   +SPS+        Y+PTSP+ +P S SYSPT
Sbjct: 1556 P------PMASPGSPGQAMSPYLGSPHSGFSPSN------MSYAPTSPSMTPNSHSYSPT 1603

Query: 1738 SPSYSPSSPTYSPSSP 1753
            SPSYSP+SP YSP+SP
Sbjct: 1604 SPSYSPTSPQYSPTSP 1619



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 50/138 (36%), Positives = 74/138 (53%), Gaps = 17/138 (12%)

Query: 1639 SPTSPSYSPT-SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT-SPTYSPTSPSYNP 1696
            S  +PS SP  +P     +P Y  +   +SP   G +P  PS+SP+ S   S  SP Y+ 
Sbjct: 1496 SAATPSTSPQRTPWAQGATPLYGQS--MWSPGGSGMTPGCPSFSPSGSSDTSGMSPGYS- 1552

Query: 1697 QSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNA 1756
                      +SP  P  SP SP    SP      S +SP++ SY+P+SP+ +P+S ++ 
Sbjct: 1553 ---------GWSP--PMASPGSPGQAMSPYLGSPHSGFSPSNMSYAPTSPSMTPNS-HSY 1600

Query: 1757 GGGNPDYSPSSPQYSPSA 1774
               +P YSP+SPQYSP++
Sbjct: 1601 SPTSPSYSPTSPQYSPTS 1618



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/125 (40%), Positives = 70/125 (56%), Gaps = 6/125 (4%)

Query: 1583 SPTSPSYSPT-SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS-YSPTSPSYSP 1640
            S  +PS SP  +P     +P Y  +   +SP     +P  P++SP+  S  S  SP YS 
Sbjct: 1496 SAATPSTSPQRTPWAQGATPLYGQS--MWSPGGSGMTPGCPSFSPSGSSDTSGMSPGYSG 1553

Query: 1641 TSP-SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
             SP   SP SP  +  SP        +SP++  Y+PTSPS +P S +YSPTSPSY+P S 
Sbjct: 1554 WSPPMASPGSPGQA-MSPYLGSPHSGFSPSNMSYAPTSPSMTPNSHSYSPTSPSYSPTSP 1612

Query: 1700 KYSPS 1704
            +YSP+
Sbjct: 1613 QYSPT 1617



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 10/107 (9%)

Query: 1690 TSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYS 1749
            TSP   P +   +P    S  SP     S  +P  P++SP+ SS +      S  SP YS
Sbjct: 1502 TSPQRTPWAQGATPLYGQSMWSP---GGSGMTPGCPSFSPSGSSDT------SGMSPGYS 1552

Query: 1750 PSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTN 1796
              SP  A  G+P  + S    SP +G+SPS   Y+P+S S  TP ++
Sbjct: 1553 GWSPPMASPGSPGQAMSPYLGSPHSGFSPSNMSYAPTSPS-MTPNSH 1598


>gi|388855841|emb|CCF50625.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
            [Ustilago hordei]
          Length = 1784

 Score = 1738 bits (4502), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 933/1778 (52%), Positives = 1207/1778 (67%), Gaps = 122/1778 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT-ERGKPKPGGLSDPRLGTIDRK 63
            F +S A +  VR VQFGILSP+EIR +SV +IE  E   E GKP+ GGLSDPRLGT+DR 
Sbjct: 9    FAHSTAPIRAVREVQFGILSPEEIRAISVCKIEVPEIKDESGKPRIGGLSDPRLGTLDRN 68

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE-DDHKFK 122
             KC+TC     ECPGHFGH++LAKP+FHIG++  V  I+  VC++C K+ AD   D  F 
Sbjct: 69   YKCQTCGEGHQECPGHFGHIDLAKPVFHIGYLGKVKKILECVCYHCGKLKADVVTDPVFD 128

Query: 123  QALKIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            Q +K    + K R +++ + C  K  CE  D  +      EE  K   GGCG  QP +  
Sbjct: 129  QIVKATRGSRKRRFQRVWEYCSKKMVCEADDPKEEDEMGFEEQAKPGHGGCGRVQPNIRR 188

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVE-RKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
            EG+K+  ++K  + ++++ E+     +  K+ L A     +LK++S ED  +LGL+ + A
Sbjct: 189  EGLKLFTQWKKGKGEDEEGEETSGIAQAEKRPLPASEAHTILKKMSSEDIAVLGLSEENA 248

Query: 240  RPDWMILQVLPIPPPPVRP------SDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            RPDWMIL V+P+PPPPVRP       DDLT++LA +IR N  L++ E+ G PAHI+++F 
Sbjct: 249  RPDWMILTVMPVPPPPVRPSVQDGGEDDLTYKLADVIRANATLKKMEQEGTPAHILADFE 308

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
            QLLQFH AT+ DN++ GQP+A Q SGRPIKS+ +RLK KEGR+RGNLMGKRV+FSARTVI
Sbjct: 309  QLLQFHCATFMDNDIAGQPQAMQSSGRPIKSVRARLKGKEGRLRGNLMGKRVNFSARTVI 368

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            T DP + +D++GVP SIA NLTYPE VTPYN   L ELV  GP+  PG   AKY+IRD G
Sbjct: 369  TGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRNGPNDYPG---AKYVIRDTG 425

Query: 414  QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
            +R+DL+Y  + SD  L+ G+ VERHL DGD++LFNRQPSLHKMS+M HRIK+M YSTFRL
Sbjct: 426  ERIDLKY-NRRSDMALQPGWIVERHLKDGDYILFNRQPSLHKMSMMSHRIKLMDYSTFRL 484

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NLSVT PYNADFDGDEMN+HVPQS ETRAE+ ++  VP+ IVSPQ+N+PVMGIVQDTL G
Sbjct: 485  NLSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCG 544

Query: 534  CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
             RK + RD  ++      +L+W  D+DG VP P ILKP+P W+GKQ+ ++ IPK IN+F 
Sbjct: 545  IRKFSLRDCLLDYQQVQQVLLWVADWDGVVPMPCILKPKPYWSGKQILSMCIPKGINVF- 603

Query: 594  TAAWHADNDKGILT--AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 651
                  D DKG+      D  V IE GE++ G + KK +G S G LIH+I+ E GP   +
Sbjct: 604  -----LDKDKGLKNNFLKDDGVYIENGEIMYGVINKKVVGASAGGLIHIIFREKGPVVCK 658

Query: 652  KFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711
            +F    Q +VN+WLL N FSIGIGDT+AD  T ++IN TI+ AK  V + IK A+   L+
Sbjct: 659  RFFSGVQRVVNFWLLHNGFSIGIGDTVADKATTDSINQTITAAKAAVMDYIKYARHDWLK 718

Query: 712  PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 771
             E G T+ ESFE  VN+VLN ARD+ G+ A+ SL + N +K MV AGSKGSFINISQM+A
Sbjct: 719  VEAGMTLRESFEANVNRVLNQARDDVGNHAEASLPDFNAVKQMVVAGSKGSFINISQMSA 778

Query: 772  CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 831
            CVGQQ+VEGKRIPFGF  R+LPHFTKDD+ PESRGFVENSYLRGLT QEFFFHAM GREG
Sbjct: 779  CVGQQSVEGKRIPFGFRHRSLPHFTKDDFTPESRGFVENSYLRGLTAQEFFFHAMAGREG 838

Query: 832  LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL 891
            LIDTAVKT+ETGYIQRRLVKA+ED+MV YDGTVRNS  +VIQF YGEDG+D   +E+QTL
Sbjct: 839  LIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSTNNVIQFAYGEDGIDGAQVETQTL 898

Query: 892  DSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL 951
             +LK+  ++F   FR ++ +  +     L+  + D    +EL+D+ D E  +LE DR+ L
Sbjct: 899  LTLKLNDADFRHMFRVDLHDSGFKKG-TLRPGLGDWS--QELQDLLDEEFAQLEFDRHLL 955

Query: 952  ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG 1011
             TEI  S      LP+N+ RL+ NAQ+ F +D R+PSD+ P E++  + ++ ERL V+ G
Sbjct: 956  RTEIFQSDQVQVRLPMNVARLMLNAQQIFHIDQRKPSDLSPAEIIIGLREVLERLIVIRG 1015

Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
            +DP+S EAQ NATL F I LRS   SK V+++H + +EA+EW++GEIE +F +S+  PGE
Sbjct: 1016 DDPISREAQVNATLLFKIHLRSYLCSKMVIEQHHINKEAWEWILGEIEGQFARSVANPGE 1075

Query: 1072 MIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKP 1131
            M G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN A+ IKTPS++V+L  
Sbjct: 1076 MCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVYLTE 1135

Query: 1132 GVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIA 1191
              + ++E AK +Q AL +TTL++VT A EV YDPDP  T+IEED +FV++++ +PDE++ 
Sbjct: 1136 QYSQSQEAAKVIQTALAHTTLQTVTSAVEVHYDPDPSATVIEEDKDFVEAFFAIPDEEVE 1195

Query: 1192 P--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI 1249
               E+ SPWLLR+EL+R  M+DK L+MA VA KI+  F  D+  + ++DNA+ LILRIR+
Sbjct: 1196 ASLERQSPWLLRLELDRAQMLDKNLTMADVASKISAMFGQDIFVMHSEDNAENLILRIRV 1255

Query: 1250 MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV----------------------- 1286
            ++++  K    +   E+++FLK + S ML E+ L+G+                       
Sbjct: 1256 VDNDPEK----EAQGEEEIFLKNLASQMLAEIDLKGIKGIKKVYIVQQDNKTRRIDPVTG 1311

Query: 1287 ---------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
                           NL  V+  E VDA RT+ N+ +E+  V GIEA R +LL E R VI
Sbjct: 1312 DWRTVSEWVLETDGSNLTEVLAVEGVDAIRTSCNNPVEVFRVFGIEAARNSLLKETRAVI 1371

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
             FDGSYVNYRHLA+LCD MT +G LMAITRHGINR + G +MRC+FEETV++L++AA   
Sbjct: 1372 EFDGSYVNYRHLALLCDIMTSQGALMAITRHGINRTNQGALMRCTFEETVELLIEAASMG 1431

Query: 1392 ESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSY---MEGLEFGMTPAR 1448
            + D  +GV +N++LGQ+AP+GTG   L L+ +MLK+ I      Y   +          +
Sbjct: 1432 DIDDCKGVAQNVLLGQMAPMGTGAFDLNLDLDMLKDTIVNHALPYDILLASRSLDAAGGK 1491

Query: 1449 SPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPG----------Y 1498
            +P + TPY                 SP +D  F  +   M FSP +  G           
Sbjct: 1492 TPGAMTPYDSS--------------SPASDDAFRVHEQAM-FSPLAQTGGDEGGYSDYLL 1536

Query: 1499 SPSSP------GYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP 1552
            +  SP        SP+  G+SP SPGY PTSPGY+ TSP  +  + +    + G   TSP
Sbjct: 1537 AGQSPMRTPLGAQSPAGYGFSPVSPGYVPTSPGYA-TSPAGALGAMSPWTGNNGLGATSP 1595

Query: 1553 AYSPTSPSY---------SPTSPSYSPTSPSYSPTSPS---YSPTSPSYSPTSPSY---S 1597
            AYSPTSP           SPTSPSYSP SP+YSP+SP+   YSPTSP  SPTSP     +
Sbjct: 1596 AYSPTSPRIFGGATSPSYSPTSPSYSPASPNYSPSSPAGAGYSPTSPRMSPTSPVGRYGA 1655

Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPT 1655
             TSP YSP SP +SPTSP YSP SPAY+PTSP YSPTSP+ +    + S+SPTSP+YSPT
Sbjct: 1656 ATSPQYSPASPKFSPTSPNYSPASPAYTPTSPVYSPTSPAIAGRGGAKSFSPTSPAYSPT 1715

Query: 1656 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
            SP YSP SPA+SPTSP YSP SP YSPTSP YSPTSP+
Sbjct: 1716 SPQYSPASPAFSPTSPQYSPASPQYSPTSPQYSPTSPA 1753



 Score =  130 bits (328), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 101/211 (47%), Positives = 128/211 (60%), Gaps = 35/211 (16%)

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1666
            SP  +P   A SP    +SP SP Y PTSP Y+ TSP+ +  + S    +     TSPAY
Sbjct: 1540 SPMRTPLG-AQSPAGYGFSPVSPGYVPTSPGYA-TSPAGALGAMSPWTGNNGLGATSPAY 1597

Query: 1667 SPTSP---------GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
            SPTSP          YSPTSPSYSP SP YSP+SP+             YSP+SPR+SP 
Sbjct: 1598 SPTSPRIFGGATSPSYSPTSPSYSPASPNYSPSSPA----------GAGYSPTSPRMSPT 1647

Query: 1718 SP-----------YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAG-GGNPDYSP 1765
            SP           YSP SP +SPTS +YSP SP+Y+P+SP YSP+SP  AG GG   +SP
Sbjct: 1648 SPVGRYGAATSPQYSPASPKFSPTSPNYSPASPAYTPTSPVYSPTSPAIAGRGGAKSFSP 1707

Query: 1766 SSPQYSPSA-GYSPSAPGYSPSSTSQYTPQT 1795
            +SP YSP++  YSP++P +SP+S  QY+P +
Sbjct: 1708 TSPAYSPTSPQYSPASPAFSPTS-PQYSPAS 1737



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 48/113 (42%), Gaps = 39/113 (34%)

Query: 1714 LSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPS--------SPYNAGGG----NP 1761
            L+  SP        SP    +SP SP Y P+SP Y+ S        SP+    G    +P
Sbjct: 1536 LAGQSPMRTPLGAQSPAGYGFSPVSPGYVPTSPGYATSPAGALGAMSPWTGNNGLGATSP 1595

Query: 1762 DYSPSSPQ-----------------------YSPS----AGYSPSAPGYSPSS 1787
             YSP+SP+                       YSPS    AGYSP++P  SP+S
Sbjct: 1596 AYSPTSPRIFGGATSPSYSPTSPSYSPASPNYSPSSPAGAGYSPTSPRMSPTS 1648


>gi|324120534|dbj|BAJ78658.1| RNA polymerase II largest subunit [Karoophasma biedouwense]
          Length = 1907

 Score = 1737 bits (4498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 881/1642 (53%), Positives = 1126/1642 (68%), Gaps = 131/1642 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A V  V+ VQFGIL+PDEIR+MSV +  I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPVRSVKRVQFGILAPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  N  ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L    + K K+ +
Sbjct: 66   CQTCAGNQTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKMLVSPTNPKIKEVV 125

Query: 126  KIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQD-----GEEPLKKNKGGCGAQQPKL 178
                  P+ RL  + D CK K  CEGGDE+D+   +      ++P K   GGCG  QP +
Sbjct: 126  MKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDNPDDPNSQQPRKAGHGGCGRYQPSI 185

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
               G+ + AE+K     N+D +      E+K +L+AERV  +LK I+DE+C +LG++PK 
Sbjct: 186  RRVGLDLTAEWK---HVNEDSQ------EKKISLSAERVWEILKHITDEECFILGMDPKL 236

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARPDWMI+ VLP+PP  VRP+          DDLTH+LA II+ N  L R E+ GA AH+
Sbjct: 237  ARPDWMIVTVLPVPPLAVRPAVVMYGSARNQDDLTHKLADIIKSNNELVRNEQAGAAAHV 296

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            I E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFS
Sbjct: 297  ILENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 356

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVITPDP + IDQ+GVP SIA N+T+PE VTP+NI++++ELV  G    PG   AKYI
Sbjct: 357  ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPG---AKYI 413

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            +RD+G+R+DLR+  KSSD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+
Sbjct: 414  VRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPW 473

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQ
Sbjct: 474  STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQ 533

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL   RK+TKRD F+EK+  MNILM+   +DGK+PQP ILKP+PLWTGKQVF+LIIP  
Sbjct: 534  DTLTAVRKMTKRDVFLEKEQMMNILMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGN 593

Query: 589  INLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
            +N+ RT + H D  D G    ++ GDT V +E  EL+ G LCKKTLGTS GSL+H+   E
Sbjct: 594  VNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHSELVMGILCKKTLGTSAGSLLHICMLE 653

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
            +G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I +
Sbjct: 654  LGHEVCGQFYGNIQTVVNSWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIHK 713

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS I
Sbjct: 714  AHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNI 773

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFH
Sbjct: 774  NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH 833

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+   
Sbjct: 834  AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGE 893

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
             +E Q L ++K+    F++ F+F+   E +      ++ + +L    ++    + E ++L
Sbjct: 894  AVEFQNLPTIKLANKSFERKFKFDPTNERYLRRIFNEDVLRELMGSGDVISELEKEWEQL 953

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
              DR ++  +I  SG+S   LP NL+R+IWNAQK F ++ R P+D+ P+ V++ V  L +
Sbjct: 954  SKDR-EVLRQIFPSGESKVVLPCNLQRMIWNAQKIFHINKRAPTDLSPLRVIQGVSDLLK 1012

Query: 1005 RLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
            +  +V G+D LS +A  NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q
Sbjct: 1013 KCIIVAGDDHLSRQANANATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQ 1072

Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS 1124
            +  +PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PS
Sbjct: 1073 AQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132

Query: 1125 LSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
            L+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYE
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYE 1192

Query: 1185 MPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            MPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+
Sbjct: 1193 MPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLV 1250

Query: 1245 LRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV--------------- 1286
            LRIRIMN +  K +  +E+    EDD+FL+ IE+NML++M L+G+               
Sbjct: 1251 LRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1310

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     +++ V+   DVD  RT SN + EI  VLGIEAVR+
Sbjct: 1311 KKRIVVTETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRK 1370

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQL-------P 1434
            D+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  IE+ +        
Sbjct: 1431 DVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMNVGAGMMA 1490

Query: 1435 SYMEGLEFGMTPARSP------VSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGM 1488
                      TP+ SP         TP +  M SPG +      ++P          GG 
Sbjct: 1491 GGGMFFGSAATPSMSPHLTPWTQGATPAYGSMWSPGNMLGSG--MTP----------GGP 1538

Query: 1489 AFSPTSSPGYSPSSPGYSPS-------------------------SPGYSPTSPGYSPTS 1523
            +FSP+ +   S  SP YSP                          SP YSP+SP + PTS
Sbjct: 1539 SFSPSGASDASGMSPSYSPWSPQPGSPSSPGPSSSPYIPSPVGGMSPTYSPSSPTFVPTS 1598

Query: 1524 PGYSPTSPGYSPTSPTYSPSSP 1545
            P  +P SP YSPTSP+YSP+SP
Sbjct: 1599 PSLTPASPNYSPTSPSYSPTSP 1620



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 97/114 (85%), Gaps = 1/114 (0%)

Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPAYSP 1612
            +  +SP Y+P +P YSPTSP+YSPTSPSYSP+SP ++P  S  YSPTSP+YSP SP+YSP
Sbjct: 1790 FVGSSPQYTPATPQYSPTSPTYSPTSPSYSPSSPQHTPGASTRYSPTSPNYSPASPSYSP 1849

Query: 1613 TSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1666
            +SP YSP+S  YSPTSP+Y+PTSP+YSP+SP+YSP  P YSPTSP+YSPTSPAY
Sbjct: 1850 SSPQYSPSSSKYSPTSPTYTPTSPNYSPSSPTYSPAVPGYSPTSPTYSPTSPAY 1903



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/120 (50%), Positives = 74/120 (61%), Gaps = 27/120 (22%)

Query: 1505 YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS---- 1560
            +  SSP Y+P +P YSPTSP YSPTS      SP+    +PG    S  YSPTSP+    
Sbjct: 1790 FVGSSPQYTPATPQYSPTSPTYSPTS---PSYSPSSPQHTPG---ASTRYSPTSPNYSPA 1843

Query: 1561 -----------------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1603
                             YSPTSP+Y+PTSP+YSP+SP+YSP  P YSPTSP+YSPTSP+Y
Sbjct: 1844 SPSYSPSSPQYSPSSSKYSPTSPTYTPTSPNYSPSSPTYSPAVPGYSPTSPTYSPTSPAY 1903



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 41/78 (52%), Gaps = 18/78 (23%)

Query: 1474 SPVTDAQFSP------------------YVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1515
            +P    ++SP                  Y    +    +SP Y+P+SP YSPSSP YSP 
Sbjct: 1826 TPGASTRYSPTSPNYSPASPSYSPSSPQYSPSSSKYSPTSPTYTPTSPNYSPSSPTYSPA 1885

Query: 1516 SPGYSPTSPGYSPTSPGY 1533
             PGYSPTSP YSPTSP Y
Sbjct: 1886 VPGYSPTSPTYSPTSPAY 1903



 Score = 45.4 bits (106), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 68/130 (52%), Positives = 86/130 (66%), Gaps = 27/130 (20%)

Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
            +  +SP Y+P +P YSPTSPTYSPTSPSY+P S +++P             ++ YSPTSP
Sbjct: 1790 FVGSSPQYTPATPQYSPTSPTYSPTSPSYSPSSPQHTPG-----------ASTRYSPTSP 1838

Query: 1726 NYSPTSSSYSPTSPSYSPSSP-------TYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYS 1777
            NYSP S SYSP+SP YSPSS        TY+P+SP        +YSPSSP YSP+  GYS
Sbjct: 1839 NYSPASPSYSPSSPQYSPSSSKYSPTSPTYTPTSP--------NYSPSSPTYSPAVPGYS 1890

Query: 1778 PSAPGYSPSS 1787
            P++P YSP+S
Sbjct: 1891 PTSPTYSPTS 1900


>gi|115910670|ref|XP_788781.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform 3
            [Strongylocentrotus purpuratus]
          Length = 1921

 Score = 1736 bits (4497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 900/1654 (54%), Positives = 1143/1654 (69%), Gaps = 127/1654 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  VR VQFG+LSPDE+R+ SV +  I + E  E GKPK GGL DPR G IDR  +
Sbjct: 9    SKAPMRNVRRVQFGVLSPDEMRRNSVTEGGIRYSEIMEAGKPKLGGLMDPRQGAIDRTSR 68

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  N  +CPGHFGH+ELAK +FHIGF+   + ++R VCF CSK+L D +  K K+ L
Sbjct: 69   CQTCACNQTDCPGHFGHMELAKAVFHIGFLTKTIKVLRCVCFFCSKLLVDANHPKIKEIL 128

Query: 126  -KIR-NPKNRLKKILDACKNKTKCEGGDEID------VPGQDGEE-PLKK-NKGGCGAQQ 175
             K +  P+ RL  +   C+ K  CEGG+E+D      +  ++GEE P KK + GGCG  Q
Sbjct: 129  IKTKGQPRKRLLHVYTECRKKKMCEGGEEMDQTFDANLAQREGEEMPEKKVSHGGCGRYQ 188

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P++   G+ + AE+K     N+D +      E+K  LTAERV  + KRISDE+   LG++
Sbjct: 189  PQIRRSGLDLSAEWK---HVNEDSQ------EKKIVLTAERVHEIFKRISDEESIALGMD 239

Query: 236  PKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAP 285
            PK+ RPDWMI+ VLP+PP  VRP+          DDLTH+LA I++ N  L+R E+NGA 
Sbjct: 240  PKFTRPDWMIITVLPVPPLCVRPAVVMFGSTRNQDDLTHKLADIMKINNQLKRNEQNGAA 299

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
            AHII+E  ++LQFH+AT  DNELPG PRA Q+SGRP+KS+  RLKAKEGRIRGNLMGKRV
Sbjct: 300  AHIIAEDTRMLQFHVATIIDNELPGLPRAMQKSGRPLKSLKQRLKAKEGRIRGNLMGKRV 359

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSAR VITPDP + IDQ+GVP +IA NLTYPE VTP+NI +L+ELV  G +  PG   A
Sbjct: 360  DFSARAVITPDPNLMIDQVGVPRTIATNLTYPEIVTPFNIAKLQELVSRGHNQYPG---A 416

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KYIIRD+G+R+DLR+  K SD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+KI
Sbjct: 417  KYIIRDNGERVDLRFHPKPSDLHLQCGYKVERHLRDDDVVIFNRQPTLHKMSMMGHRVKI 476

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            + +STFRLNLSVT+PYNADFDGDEMN+HVPQS ETRAEV E++MV + +++PQSNRPVMG
Sbjct: 477  LTWSTFRLNLSVTTPYNADFDGDEMNLHVPQSMETRAEVSEMIMVSRNMITPQSNRPVMG 536

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQD+L   RK TKRD F+ K   MN+L++  ++DGK+P+P ILKPRPLWTGKQ+  L+I
Sbjct: 537  IVQDSLCAIRKFTKRDVFVTKPNVMNLLLFLPNWDGKIPKPAILKPRPLWTGKQLLTLVI 596

Query: 586  PKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            P  +N+ R  + H D  D+G    L+ GDT V I  GEL++G +CKKT+G S G+L H+I
Sbjct: 597  PDNVNVVRFHSTHPDGEDRGPYKWLSPGDTKVYIVNGELITGIVCKKTVGASGGTLGHII 656

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E G + A++F    Q LVN WLL    SIGIGD IADA T + I +TI KAK +V  +
Sbjct: 657  FMERGHEIAKEFYSVVQVLVNNWLLLEGHSIGIGDCIADASTYDDIQNTIRKAKQDVIEV 716

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
            I++A +  L P PG ++ ++FEN+VN++LN ARD+ G SAQKSLSE NN K MV AGSKG
Sbjct: 717  IEKAHNDELTPTPGNSLRQTFENQVNRLLNEARDKTGGSAQKSLSEFNNFKTMVVAGSKG 776

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP E 
Sbjct: 777  SKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEM 836

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV+YDGT RNS   ++Q  YGEDG+
Sbjct: 837  FFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVRYDGTCRNSNDQLVQLRYGEDGL 896

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
            D   IE Q L SLK     F+K F+F+ + E        ++ + D+     +    + E 
Sbjct: 897  DGTSIEFQNLASLKPSHKAFEKRFKFDYNNEKMLRRCFNEKIVKDVVANAHVHLELEKEY 956

Query: 942  QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
             +L+ DR ++  +I   G+S   LP NL R+IWNAQ+ F ++ R PS++HP  V+E V  
Sbjct: 957  DQLKEDR-EVLRKIFPKGESKVALPCNLDRMIWNAQQIFHINTRLPSELHPSFVLEGVRD 1015

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L+++L +V GED +S +AQ+NAT   N L+RST +S RV +EH+L+ E+FEW++GEIE+R
Sbjct: 1016 LKKKLVIVKGEDAISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIETR 1075

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F QSL   GEM+G +AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN++KK +
Sbjct: 1076 FNQSLAMAGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPR 1135

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPSL+ FL        ERAK++ C LE+TTLR VT  T ++YDP+P GT+I ED ++V  
Sbjct: 1136 TPSLTCFLLGKAARDAERAKDILCRLEHTTLRKVTANTAIYYDPEPQGTVIAEDQDWVNL 1195

Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            YY MPD D  P +ISPWLLR+EL+R+ M D+KLSM  +AEKIN  F DDL CIFNDDNA+
Sbjct: 1196 YYMMPDFD--PTRISPWLLRVELDRKRMTDRKLSMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1242 KLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGVNLLA-------- 1290
            KL+LRIRIMN +  K +  +E     EDDVFL+ IESNMLT+M L+G+  +A        
Sbjct: 1254 KLVLRIRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGIEQIAKVYMHLPQ 1313

Query: 1291 --------------------------------VMCHEDVDARRTTSNHLIEIIEVLGIEA 1318
                                            V+   +VD  RT SN + EI +VLGIEA
Sbjct: 1314 VANKKRIIITEEGEFKHIAEWILETDGTAMMKVLSDPEVDPVRTFSNDICEIFQVLGIEA 1373

Query: 1319 VRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE 1378
            VR+++  E+  VISFDGSYVNYRHLA+LCD MT RGHLMAITRHGINR D G +MRCSFE
Sbjct: 1374 VRKSVETEMNHVISFDGSYVNYRHLALLCDVMTARGHLMAITRHGINRQDVGALMRCSFE 1433

Query: 1379 ETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME 1438
            ETVDIL DA    E+D+L+GV+ENIMLG+LA +GTG   L L+ E  K+ +E+ +     
Sbjct: 1434 ETVDILNDAGAHGETDHLKGVSENIMLGKLAGLGTGSFDLLLDAEKCKHGMEIPM----- 1488

Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPY------VGGMAFSP 1492
            G+  G+        G P   GM+  G + SP+  +SP    Q +P+      + G ++SP
Sbjct: 1489 GMGAGLV-------GMP---GMLF-GAMGSPSQSMSP----QMTPWNQGATPMHGASWSP 1533

Query: 1493 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPT-SPGYSPTSPGYSPTSPTYSPSSPGYS--- 1548
                G +P  PG+SP++   +  SP YSP  SP   P SPG SP +  Y PS  G     
Sbjct: 1534 MMGSGMTPGGPGFSPANSESTGFSPAYSPAWSP--QPQSPG-SPANSPYIPSPAGPMSPS 1590

Query: 1549 ---------PTSPAYSPTSPSYSPTSPSYSPTSP 1573
                     P SPA +P SP YSPTSPSYSPTSP
Sbjct: 1591 YSPASPSYLPASPA-TPQSPGYSPTSPSYSPTSP 1623



 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 62/92 (67%), Gaps = 22/92 (23%)

Query: 1679 SYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPT 1737
            ++SP+SPTYSP SPSY             SP+SP+ SP+SP YSPTSP YSPTS  YSP 
Sbjct: 1820 NFSPSSPTYSPASPSY-------------SPTSPKYSPSSPKYSPTSPTYSPTSPKYSPA 1866

Query: 1738 SPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQ 1769
            SP+YSP+SP YSPSS        P YSP+SP+
Sbjct: 1867 SPTYSPTSPKYSPSS--------PTYSPTSPK 1890


>gi|324120576|dbj|BAJ78679.1| RNA polymerase II largest subunit [Inocellia japonica]
          Length = 1913

 Score = 1736 bits (4495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 898/1651 (54%), Positives = 1136/1651 (68%), Gaps = 137/1651 (8%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A V  V+ VQFGILSPDEIR+MSV    I   ET E G+PK GGL DPR G IDR   
Sbjct: 7    SKATVRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGQPKMGGLMDPRQGVIDRNSC 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TCT NM +CPGHFGH++L+KP+FH+GF+   + I+R VCF CSK+L    + K K+  
Sbjct: 67   CKTCTGNMTQCPGHFGHIDLSKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSNPKIKEIV 126

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPL---KKNKGGCGAQQPKLTI 180
            +K +  P+ RL  + D CK K  CEGGDE+D+  +D    +   K   GGCG  QP +  
Sbjct: 127  MKSKGQPRKRLAFVYDLCKGKHICEGGDEMDIGKEDDGRSISTAKNTHGGCGRYQPNIRR 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ + AE+K     N+D +      E+K  L+AERV  + K I+DE+C +LG++PK+AR
Sbjct: 187  TGLDLTAEWK---HVNEDSQ------EKKIALSAERVWEIFKHITDEECFILGMDPKFAR 237

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMI+ VLP+PP  VRP+          DDLTH+LA I++ N  L R E +GA AH+IS
Sbjct: 238  PDWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIVKSNNELARNEASGAAAHVIS 297

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG PRA Q+SG+P+K++ +RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 298  ENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDFSAR 357

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA NLT+PE VTP+NIE++ ELV+ G    PG   AKYI+R
Sbjct: 358  TVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIEKMMELVQRGNSQYPG---AKYIVR 414

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 415  DNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVIFNRQPTLHKMSMMGHRVKVLPWST 474

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 475  FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDT 534

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD FIEK+  MN+LM+   +DGK+PQP ILKP+PLWTGKQVF+LIIP  +N
Sbjct: 535  LTAVRKMTKRDVFIEKEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVN 594

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            L RT + H D+ D G    ++ GDT V +E GEL+ G LCK+TLG S GSL+H+ + E+G
Sbjct: 595  LIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKRTLGASAGSLLHICFLELG 654

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A 
Sbjct: 655  HEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 714

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV AGSKGS INI
Sbjct: 715  NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 774

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 834

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGEMV 894

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E Q+L ++K+    F+  F+F+   E     Y+ + + +D+  +K+L       +Q+LE 
Sbjct: 895  EFQSLPTVKLSNRAFENKFKFDPSNE----RYLRRIFAEDV--VKQLMSSGGDVIQELER 948

Query: 947  DRYQLAT------EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            +  QL        +I  SGD+   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V 
Sbjct: 949  EWEQLVKDREALRQIFPSGDNKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVR 1008

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L  +  +V GED LS +A +NATL F  L+RS   +K V +E RL+ EAFEW+IGEIE+
Sbjct: 1009 DLLAKCIIVAGEDHLSKQANENATLLFQCLVRSXLCTKCVAEEFRLSSEAFEWLIGEIET 1068

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RF Q+  APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK 
Sbjct: 1069 RFQQAQCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 1128

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            K PSL+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV 
Sbjct: 1129 KAPSLTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVN 1188

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
             YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA
Sbjct: 1189 VYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNA 1246

Query: 1241 DKLILRIRIMNDEAPK---GELNDESA---EDDVFLKKIESNMLTEMALRGVNLLA---- 1290
            +KL+LRIRIMN E  K   GE  DE     EDD+FL+ IE+NML++M L+G+  +A    
Sbjct: 1247 EKLVLRIRIMNSEDNKFTGGENGDEDVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYM 1306

Query: 1291 ------------------------------------VMCHEDVDARRTTSNHLIEIIEVL 1314
                                                V+   DVD  RT SN + EI  VL
Sbjct: 1307 HLPQTDSKKRIVVTETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVL 1366

Query: 1315 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
            GIEAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MR
Sbjct: 1367 GIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMR 1426

Query: 1375 CSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--- 1431
            CSFEETVD+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ +  K  IEL   
Sbjct: 1427 CSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDADKCKAGIELPLG 1486

Query: 1432 ----------QLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSP--VTDA 1479
                                   TP+ SP   TP++ G  +PGY   P    SP  +  +
Sbjct: 1487 LGAGGGMGMGVGGGAGMFFGAAATPSMSP-QMTPWNQG-STPGY--GPGSAWSPGQMLGS 1542

Query: 1480 QFSPYVGGMAFSPTSSPGYSPSSPGY-SPSSPGYSPTSPGYSP----------------- 1521
              +P  GG +FSP+++   S  SPGY SP SP   P SP  SP                 
Sbjct: 1543 GMTP--GGPSFSPSAASDASGMSPGYASPWSP--QPASPSMSPYIPSGSQSPSYSPSSPS 1598

Query: 1522 ---TSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
               TSP  +PTSPGYSPTSP+YSP+SP YSP
Sbjct: 1599 FAPTSPSLAPTSPGYSPTSPSYSPTSPHYSP 1629



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 66/126 (52%), Gaps = 31/126 (24%)

Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT----YSPSSPG 1546
            +P+ SP  +P + G   S+PGY P S  +SP     S  +PG    SP+     S  SPG
Sbjct: 1510 TPSMSPQMTPWNQG---STPGYGPGS-AWSPGQMLGSGMTPGGPSFSPSAASDASGMSPG 1565

Query: 1547 Y-SPTSPAYSPTSPSYSP--------------------TSPSYSPTSPSYSPTSPSYSPT 1585
            Y SP SP   P SPS SP                    TSPS +PTSP YSPTSPSYSPT
Sbjct: 1566 YASPWSP--QPASPSMSPYIPSGSQSPSYSPSSPSFAPTSPSLAPTSPGYSPTSPSYSPT 1623

Query: 1586 SPSYSP 1591
            SP YSP
Sbjct: 1624 SPHYSP 1629



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 44/63 (69%), Gaps = 10/63 (15%)

Query: 1710 SSPRLSPASP-YSPTSPNYSPTSSSYSPTSPS-YSPSSPTYSPSSPYNAGGGNPDYSPSS 1767
            +S R SP+SP YSPTSP+YSP S  YSPT  S YSP+SPTY+P+S        P YSP+S
Sbjct: 1834 ASTRYSPSSPNYSPTSPSYSPASPQYSPTGSSKYSPTSPTYTPTS--------PSYSPAS 1885

Query: 1768 PQY 1770
            P Y
Sbjct: 1886 PAY 1888


>gi|71019559|ref|XP_760010.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
 gi|46099536|gb|EAK84769.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
          Length = 1774

 Score = 1733 bits (4489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 930/1769 (52%), Positives = 1198/1769 (67%), Gaps = 116/1769 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT-ERGKPKPGGLSDPRLGTIDRK 63
            F +S A +  VR VQFGILSP+EIR +SV ++E  E   E GKP+ GGLSDPRLGT+DR 
Sbjct: 9    FAHSTAPIRPVREVQFGILSPEEIRAISVCKVEIPEIKDEAGKPRIGGLSDPRLGTLDRN 68

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE-DDHKFK 122
             KC+TC     ECPGHFGH++LAKP+FHIG++  V  I+  VCF+C K+ AD   D  F 
Sbjct: 69   YKCQTCGEGHQECPGHFGHIDLAKPVFHIGYLGKVKKILECVCFHCGKLKADTVTDPVFD 128

Query: 123  QALKIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            Q +K    + K R +++ + C  K  CE  D  D      +E  K   GGCG  QP +  
Sbjct: 129  QIVKATRGSKKRRFQRVWEYCSKKMICEADDPKDEDEMGFDEQNKPGHGGCGRVQPNIRR 188

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EG+K+  ++K  + +++D E+       K+ L A     +LK++S  D  +LGL+ + AR
Sbjct: 189  EGLKLFTQWKKGKGEDEDGEENAIAQAEKRPLPASEAHTILKKMSSHDIAVLGLSEENAR 248

Query: 241  PDWMILQVLPIPPPPVRP------SDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            PDWM+L VLP+PPPPVRP       DDLT++LA +IR N  L++ E+ G PAHI+++F Q
Sbjct: 249  PDWMVLTVLPVPPPPVRPSVQDGGEDDLTYKLADVIRANATLKKMEQEGTPAHILADFEQ 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH AT+ DN++ GQP+A Q SGRPIKSI +RLK KEGR+RGNLMGKRV+FSARTVIT
Sbjct: 309  LLQFHCATFMDNDIAGQPQAMQSSGRPIKSIRARLKGKEGRLRGNLMGKRVNFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + +D++GVP SIA NLTYPE VTPYN   L ELV  GP+  PG   AKY+IRD G+
Sbjct: 369  GDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRNGPNDYPG---AKYVIRDTGE 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DL+Y  + SD  L+ G+ VERHL DGD++LFNRQPSLHKMS+M HRIK+M YSTFRLN
Sbjct: 426  RIDLKY-NRRSDMALQPGWIVERHLKDGDYILFNRQPSLHKMSMMSHRIKLMDYSTFRLN 484

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT PYNADFDGDEMN+HVPQS ETRAE+ ++  VP+ IVSPQ+N+PVMGIVQDTL G 
Sbjct: 485  LSVTPPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGI 544

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK + RD  ++      +L+W  D+DG VP P ILKP+P W+GKQ+ ++ IPK IN+F  
Sbjct: 545  RKFSLRDCLLDYQQVQQVLLWVADWDGVVPMPCILKPKPYWSGKQILSMCIPKGINVF-- 602

Query: 595  AAWHADNDKGILT--AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARK 652
                 D DKG+      D  V IE GE++ G + KK +G S G LIH+I+ E GP   ++
Sbjct: 603  ----LDKDKGLKNNFLKDDGVYIENGEIMYGVINKKVVGASAGGLIHIIFREKGPVVCKR 658

Query: 653  FLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEP 712
            F    Q +VN+WLL N FSIGIGDT+AD  T ++IN TI+ AK  V + IK A+   L+ 
Sbjct: 659  FFSGVQRVVNFWLLHNGFSIGIGDTVADKATTDSINQTIAAAKAAVMDYIKYARHDWLKV 718

Query: 713  EPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 772
            E G T+ ESFE  VN+VLN ARD+ G+ A+ SL + NN+K MV +GSKGSFINISQM+AC
Sbjct: 719  EAGMTLRESFEANVNRVLNQARDDVGNHAETSLPDFNNVKQMVVSGSKGSFINISQMSAC 778

Query: 773  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 832
            VGQQ+VEGKRIPFGF  R+LPHFTKDD+ PESRGFVENSYLRGLT QEFFFHAM GREGL
Sbjct: 779  VGQQSVEGKRIPFGFRHRSLPHFTKDDFTPESRGFVENSYLRGLTAQEFFFHAMAGREGL 838

Query: 833  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLD 892
            IDTAVKT+ETGYIQRRLVKA+ED+MV YDGTVRNS  +VIQF YGEDG+D   +E+QTL 
Sbjct: 839  IDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSTNNVIQFAYGEDGIDGAQVETQTLL 898

Query: 893  SLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLA 952
            +LK+  ++F   FR ++ +  +     L+  + D    +EL+D+ D E  +LE DR  L 
Sbjct: 899  TLKLNDADFRHMFRVDLHDGGFKKG-TLRPGLGDWS--QELQDLLDEEFAQLEFDRNLLR 955

Query: 953  TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGE 1012
             EI  S      LP+N+ RL+ NAQ+ F VDPR+P+D+ P EV+  +  + +RL V+ G+
Sbjct: 956  HEIFQSDQVQVRLPMNVARLVLNAQQIFHVDPRKPTDLSPAEVIIGLRNVLDRLIVIRGD 1015

Query: 1013 DPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEM 1072
            DP+S EAQ NATL F I LRS   SK V+++H + +EA+EW++GEIE +F +S+  PGEM
Sbjct: 1016 DPISREAQMNATLLFKIHLRSYLCSKMVIEQHHINKEAWEWILGEIEGQFARSVANPGEM 1075

Query: 1073 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPG 1132
             G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN A+ IKTPS++V+L   
Sbjct: 1076 CGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVYLTEQ 1135

Query: 1133 VNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAP 1192
             + ++E AK +Q AL +TTL++VT A EV YDPDP  T+IEED +FV++++ +PDE++  
Sbjct: 1136 YSQSQESAKVIQTALAHTTLQTVTSAVEVHYDPDPSATVIEEDKDFVEAFFAIPDEEVEA 1195

Query: 1193 --EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
              E+ SPWLLR+EL+R  M+DK L+MA VA KI+  F  D+  + ++DNA+ LILRIR++
Sbjct: 1196 SLERQSPWLLRLELDRAQMLDKNLTMADVASKISAMFGQDIFVMHSEDNAENLILRIRVV 1255

Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------------------------ 1286
            +++  K    +   E+++FLK + S ML E+ L+G+                        
Sbjct: 1256 DNDPEK----EAQGEEEIFLKNLASQMLAEIDLKGIKGIRKVYIVQQDNKTRRVDPITGD 1311

Query: 1287 --------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
                          NL  V+  E VDA RT+ N+ +E+  V GIEA R +LL E R VI 
Sbjct: 1312 WRTVSEWVLETDGSNLAEVLAVEGVDAIRTSCNNPVEVFRVFGIEAARNSLLRETRAVIE 1371

Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
            FDGSYVNYRHLA+LCD MT +G LMAITRHGINR + G +MRC+FEETV++L++AA   +
Sbjct: 1372 FDGSYVNYRHLALLCDIMTSQGALMAITRHGINRTNQGALMRCTFEETVELLIEAASMGD 1431

Query: 1393 SDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI---ELQLPSYMEGLEFGMTPARS 1449
             D  +GV +N++LGQ+AP+GTG   L L+ EMLK+ I    L   + +          ++
Sbjct: 1432 VDDCKGVAQNVLLGQMAPMGTGAFDLNLDLEMLKDTIVNHALPYDTLLASRSLDAAGGKT 1491

Query: 1450 PVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGY---- 1505
            P + TPY                 SP +D  F  +   M FSP +  G      GY    
Sbjct: 1492 PGAMTPYDSS--------------SPASDDAFRVHEQAM-FSPLAQTGGDEG--GYNDYL 1534

Query: 1506 -SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG----YSPTSPAYSPTSPS 1560
             S +SP  +P     SP   G+SP SPGY PTSP Y+ S  G     SP +     TSP+
Sbjct: 1535 LSGTSPMRTPLG-AQSPAGYGFSPVSPGYVPTSPGYATSPAGALGGMSPWTGNMGATSPA 1593

Query: 1561 YSPTSPSY---------SPTSPSYSPTSPSYSPTSPS---YSPTSPSY---SPTSPSYSP 1605
            YSPTSP           SPTSPSYSP SP+YSP+SP+   YSP+SP+    + TSP YSP
Sbjct: 1594 YSPTSPRIFGGATSPSYSPTSPSYSPASPNYSPSSPAGAGYSPSSPAGRYGAATSPQYSP 1653

Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTS 1663
             SP +SPTSP YSP SPAY+PTSP YSPTSP+ +       +SPTSP+YSPTSP YSP S
Sbjct: 1654 ASPKFSPTSPNYSPASPAYTPTSPVYSPTSPAMAGRGGGKGFSPTSPAYSPTSPQYSPAS 1713

Query: 1664 PAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
            PA+SPTSP YSP SP YSPTSP YSPTSP
Sbjct: 1714 PAFSPTSPQYSPASPQYSPTSPQYSPTSP 1742



 Score =  150 bits (379), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 119/227 (52%), Positives = 142/227 (62%), Gaps = 34/227 (14%)

Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA-----YSPTSPAYSPTSPA 1623
            S TSP  +P   + SP    +SP SP Y PTSP Y+ TSPA      SP +     TSPA
Sbjct: 1536 SGTSPMRTPLG-AQSPAGYGFSPVSPGYVPTSPGYA-TSPAGALGGMSPWTGNMGATSPA 1593

Query: 1624 YSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPS---YSPTSPAY---SPTSPGYSP 1675
            YSPTSP      TSPSYSPTSPSYSP SP+YSP+SP+   YSP+SPA    + TSP YSP
Sbjct: 1594 YSPTSPRIFGGATSPSYSPTSPSYSPASPNYSPSSPAGAGYSPSSPAGRYGAATSPQYSP 1653

Query: 1676 TSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYS 1735
             SP +SPTSP YSP SP+Y P S  YSP+          SPA         +SPTS +YS
Sbjct: 1654 ASPKFSPTSPNYSPASPAYTPTSPVYSPT----------SPAMAGRGGGKGFSPTSPAYS 1703

Query: 1736 PTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAP 1781
            PTSP YSP+SP +SP+S        P YSP+SPQYSP++  YSP++P
Sbjct: 1704 PTSPQYSPASPAFSPTS--------PQYSPASPQYSPTSPQYSPTSP 1742



 Score =  130 bits (326), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/202 (50%), Positives = 129/202 (63%), Gaps = 27/202 (13%)

Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS-----YSPTSPSYSPTSPA 1665
            S TSP  +P   A SP    +SP SP Y PTSP Y+ TSP+      SP + +   TSPA
Sbjct: 1536 SGTSPMRTPLG-AQSPAGYGFSPVSPGYVPTSPGYA-TSPAGALGGMSPWTGNMGATSPA 1593

Query: 1666 YSPTSP---------GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSP 1716
            YSPTSP          YSPTSPSYSP SP YSP+SP+     A YSPS   SP+    + 
Sbjct: 1594 YSPTSPRIFGGATSPSYSPTSPSYSPASPNYSPSSPA----GAGYSPS---SPAGRYGAA 1646

Query: 1717 ASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAG-GGNPDYSPSSPQYSPSA 1774
             SP YSP SP +SPTS +YSP SP+Y+P+SP YSP+SP  AG GG   +SP+SP YSP++
Sbjct: 1647 TSPQYSPASPKFSPTSPNYSPASPAYTPTSPVYSPTSPAMAGRGGGKGFSPTSPAYSPTS 1706

Query: 1775 -GYSPSAPGYSPSSTSQYTPQT 1795
              YSP++P +SP+S  QY+P +
Sbjct: 1707 PQYSPASPAFSPTS-PQYSPAS 1727



 Score = 49.3 bits (116), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 39/121 (32%)

Query: 1714 LSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPS--------SPY--NAGGGNPDY 1763
            LS  SP        SP    +SP SP Y P+SP Y+ S        SP+  N G  +P Y
Sbjct: 1535 LSGTSPMRTPLGAQSPAGYGFSPVSPGYVPTSPGYATSPAGALGGMSPWTGNMGATSPAY 1594

Query: 1764 SPSSPQ-----------------------YSPS----AGYSPSAPG--YSPSSTSQYTPQ 1794
            SP+SP+                       YSPS    AGYSPS+P   Y  +++ QY+P 
Sbjct: 1595 SPTSPRIFGGATSPSYSPTSPSYSPASPNYSPSSPAGAGYSPSSPAGRYGAATSPQYSPA 1654

Query: 1795 T 1795
            +
Sbjct: 1655 S 1655


>gi|324120516|dbj|BAJ78649.1| RNA polymerase II largest subunit [Thermobia domestica]
          Length = 1699

 Score = 1733 bits (4489), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 902/1650 (54%), Positives = 1150/1650 (69%), Gaps = 112/1650 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I   ET E G+PK GGL DPR G +DR  +
Sbjct: 7    SKAPLRTVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVMDRMSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP++HIGF+   + I+R VCF CSK+L   ++ K K+  
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVYHIGFITKTIKILRCVCFYCSKLLVSPNNPKIKEIV 126

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK----GGCGAQQPKLT 179
            +K +  P+ R   + D CK K  CEGGDE+DV  ++ ++P  + K    GGCG  QP + 
Sbjct: 127  MKSKGQPRKRFAFVYDLCKGKNICEGGDEMDVQKENPDDPSSQAKRSGHGGCGRYQPSIR 186

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
              G+ + AE+K     N+D +      E+K +L+AERV  + K ISDE+C +LG++PKYA
Sbjct: 187  RAGLDLTAEWK---HVNEDSQ------EKKISLSAERVWEIFKHISDEECFILGMDPKYA 237

Query: 240  RPDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RPDWMI+ VLP+PP             R  DDLTH+LA II+ N  L R E+ GA AH+I
Sbjct: 238  RPDWMIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKLADIIKANNELTRNEQAGAAAHVI 297

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            +E  ++LQFH+AT  DN++PG P+A Q+SG+PIK+I  RLK KEGRIRGNLMGKRVDFSA
Sbjct: 298  AENIKMLQFHVATLVDNDMPGMPKAMQKSGKPIKAIKGRLKGKEGRIRGNLMGKRVDFSA 357

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVITPDP + IDQ+GVP S+A NLT+PE VTP+NI+++++LV  G    PG   AKYI+
Sbjct: 358  RTVITPDPNLRIDQVGVPRSVAQNLTFPEIVTPFNIDKMQDLVRRGNSQYPG---AKYIV 414

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+S
Sbjct: 415  RDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWS 474

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLSVTSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQSN+PVMGIVQD
Sbjct: 475  TFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQSNKPVMGIVQD 534

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK+TKRD F+EK+  MN+LM    +DGK+PQP+ILKP+PLWTGKQVF+LIIP  +
Sbjct: 535  TLTAVRKMTKRDVFLEKEQMMNLLMHLPIWDGKMPQPSILKPKPLWTGKQVFSLIIPGNV 594

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            N+ RT + H D+ D G    ++ GDT V +E GEL+ G LCKKTLG+S GSL+H+   E+
Sbjct: 595  NVTRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGSSAGSLLHICMLEL 654

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A
Sbjct: 655  GHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYTEIQRAIKKAKEDVIEVIQKA 714

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS IN
Sbjct: 715  HNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNIN 774

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHA
Sbjct: 775  ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 834

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    
Sbjct: 835  MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGET 894

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E Q+L +LK+    F+K F+F+   E +      ++ + +L    ++    + E ++L 
Sbjct: 895  VEFQSLPTLKLSNRVFEKKFKFDPTNERYLRRVFTEDILRELMGSGDVISELEKEWEQLV 954

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L  +I  +G++S  LP NL+R+IWN QK F ++ R P+D+ P+ V++ V  L  +
Sbjct: 955  KDREAL-RQIFPTGETSVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVKDLLRK 1013

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
              +V G+D LS +A +NATL F  L+R+T  +K V  + RL+ EAFEW+IGEIESRF Q+
Sbjct: 1014 CVIVAGDDHLSKQANENATLLFQCLVRATLCTKAVSDDSRLSAEAFEWLIGEIESRFQQA 1073

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
               PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL
Sbjct: 1074 QCQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSL 1133

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEM
Sbjct: 1134 TVFLTGVAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEM 1193

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+L
Sbjct: 1194 PDFD--PSRISPWLLRIELDRKRMTDKKLTMEHIAEKINAGFGDDLNCIFNDDNAEKLVL 1251

Query: 1246 RIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV---------------- 1286
            RIRIMN +  K +  +E     EDD+FL+ IE+NML++M L+G+                
Sbjct: 1252 RIRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSK 1311

Query: 1287 ------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                    +L+ V+   DVD  RT SN + EI  VLGIEAVR++
Sbjct: 1312 KRIVITETGEFKSIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKS 1371

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            +  E+  V+SF G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD
Sbjct: 1372 VEKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1431

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIE--LQLPSYMEGL 1440
            +L+DAA  AE D +RGV+ENI++GQLA +GTG   L L+ E  K+ IE  + + + M G 
Sbjct: 1432 VLMDAASHAEVDPMRGVSENIIMGQLARMGTGCFDLLLDAEKCKHGIEIPMNIGAGMMGA 1491

Query: 1441 EFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSP 1500
                  A +P S +P     M+P               AQ S    G  +SP    G +P
Sbjct: 1492 GMFFGSAGTPSSMSP----QMTPW--------------AQGSTPAYGSVWSPGLGSGMTP 1533

Query: 1501 SSPGYSPS-SPGYSPTSPGYSPT---SPGYSPTSPGYSPTSPTYSPS-SPGYSPTSPAYS 1555
              PG+SPS S   S  SPGYSP     PG SPTSPG  P    Y PS +PG SP+    S
Sbjct: 1534 GGPGFSPSGSSDASGLSPGYSPAWSPQPG-SPTSPG--PAMSPYIPSPAPGMSPSYSPSS 1590

Query: 1556 P----TSPSYSPTSPSYSPTSPSYSPTSPS 1581
            P    TSPS +P SP+YSPTSPSYSPTSP+
Sbjct: 1591 PAYAPTSPSMTPASPNYSPTSPSYSPTSPN 1620



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 61/121 (50%), Gaps = 21/121 (17%)

Query: 1583 SPTSPSYSPTSPSYSPTSPS-YSP-TSPAYSPTSPAYSPT-SPAYSPTSPSYSPTSPSYS 1639
            S  SP  +P +   +P   S +SP      +P  P +SP+ S   S  SP YSP   ++S
Sbjct: 1502 SSMSPQMTPWAQGSTPAYGSVWSPGLGSGMTPGGPGFSPSGSSDASGLSPGYSP---AWS 1558

Query: 1640 PTSPSYSPTSPSYSPTSPSYSP---------------TSPAYSPTSPGYSPTSPSYSPTS 1684
            P   S +   P+ SP  PS +P               TSP+ +P SP YSPTSPSYSPTS
Sbjct: 1559 PQPGSPTSPGPAMSPYIPSPAPGMSPSYSPSSPAYAPTSPSMTPASPNYSPTSPSYSPTS 1618

Query: 1685 P 1685
            P
Sbjct: 1619 P 1619



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 69/125 (55%), Gaps = 10/125 (8%)

Query: 1625 SPTSPSYSPTSPSYSPTSPS-YSPTSPS-YSPTSPSYSPT-SPAYSPTSPGYSPTSPSYS 1681
            S  SP  +P +   +P   S +SP   S  +P  P +SP+ S   S  SPGYSP   ++S
Sbjct: 1502 SSMSPQMTPWAQGSTPAYGSVWSPGLGSGMTPGGPGFSPSGSSDASGLSPGYSP---AWS 1558

Query: 1682 PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY 1741
            P     SPTSP   P  + Y PS A   S      +  Y+PTSP+ +P S +YSPTSPSY
Sbjct: 1559 PQPG--SPTSPG--PAMSPYIPSPAPGMSPSYSPSSPAYAPTSPSMTPASPNYSPTSPSY 1614

Query: 1742 SPSSP 1746
            SP+SP
Sbjct: 1615 SPTSP 1619



 Score = 40.8 bits (94), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 63/122 (51%), Gaps = 17/122 (13%)

Query: 1683 TSPTYSPTSPSYNPQS--------AKYSPSL--AYSPSSPRLSP--ASPYSPTSPNYSPT 1730
            ++ T S  SP   P +        + +SP L    +P  P  SP  +S  S  SP YSP 
Sbjct: 1497 SAGTPSSMSPQMTPWAQGSTPAYGSVWSPGLGSGMTPGGPGFSPSGSSDASGLSPGYSPA 1556

Query: 1731 SSSY--SPTS--PSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSP 1785
             S    SPTS  P+ SP  P+ +P    +    +P Y+P+SP  +P++  YSP++P YSP
Sbjct: 1557 WSPQPGSPTSPGPAMSPYIPSPAPGMSPSYSPSSPAYAPTSPSMTPASPNYSPTSPSYSP 1616

Query: 1786 SS 1787
            +S
Sbjct: 1617 TS 1618


>gi|321464303|gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
          Length = 1895

 Score = 1733 bits (4488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 873/1576 (55%), Positives = 1119/1576 (71%), Gaps = 102/1576 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I++ E  E GKPK GGL DPR G IDR  +
Sbjct: 8    SKATIRLVKRVQFGILSPDEIRRMSVTEGGIKYPEIYEGGKPKLGGLMDPRQGVIDRSAR 67

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP++HIGF++  + I+R VCF CSK+L   ++ K K+ L
Sbjct: 68   CQTCAGNMNECPGHFGHIDLAKPVYHIGFIQKTMKILRCVCFYCSKLLVSPNNPKIKEIL 127

Query: 126  --KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK-----GGCGAQQPKL 178
                  P+ R+  + D CK K  CEGGDEID+ G+D E+  K+ K     GGCG  QP +
Sbjct: 128  VKSKGQPRKRMAHVYDLCKGKNICEGGDEIDI-GKD-EDISKEGKKGIGHGGCGRYQPTI 185

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              +G++M  E+K     N+D +      E+K  LTAERV  + K ISDE+C +LG++PKY
Sbjct: 186  RRQGLEMTGEWK---HVNEDSQ------EKKIVLTAERVWEIFKHISDEECAILGMDPKY 236

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARPDWMI+  LP+PP  VRP+          DDLTH+LA I++ N  L+R E++GA AHI
Sbjct: 237  ARPDWMIVTCLPVPPLAVRPAVVMHGSARNQDDLTHKLADIVKANNELQRNEQSGAAAHI 296

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            I+E  ++LQFH+AT  DN+ PG PRA Q+SGRPIKS+ +RLK KEGRIRGNLMGKRVDFS
Sbjct: 297  IAENIKMLQFHVATMVDNDSPGLPRAQQKSGRPIKSVKARLKGKEGRIRGNLMGKRVDFS 356

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVITPDP + IDQ+GVP SIA N+T+PE VTP+NIE+++ELV+ G    PG   AKYI
Sbjct: 357  ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIEKMQELVQRGNSQYPG---AKYI 413

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IR++G R+DLR+  KSSD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+
Sbjct: 414  IRENGDRIDLRFHPKSSDLHLQCGYKVERHIRDGDLVVFNRQPTLHKMSMMGHRVKVLPW 473

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQ
Sbjct: 474  STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQ 533

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL   RK+TKRD F+EK+  MN+LM+   +DGK+PQP ILKPRP WTGKQ+F LIIP  
Sbjct: 534  DTLCAVRKMTKRDVFLEKEQMMNLLMFLPTWDGKMPQPAILKPRPQWTGKQLFTLIIPGN 593

Query: 589  INLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
            +N+ RT + H D+ D+G    ++ GDT V +E GEL+ G LCKKTLG S  SL+H+I+ E
Sbjct: 594  VNMIRTHSTHPDDEDEGPYKWISPGDTKVMVENGELVMGILCKKTLGASAASLLHIIFME 653

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
            +G +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I  TI KAK +V  +I++
Sbjct: 654  LGHEVCGRFYGNIQTVINNWLLYEGHSIGIGDTIADPQTYLDIQATIKKAKEDVIEVIQK 713

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            + +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV AGSKGS I
Sbjct: 714  SHNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNI 773

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FH
Sbjct: 774  NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFH 833

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+ + 
Sbjct: 834  AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLSAE 893

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
             +E QT+ ++K+    F+K F+FE   E +      +E   +L +  E+    + E ++L
Sbjct: 894  SVEFQTMPTVKLSNKAFEKKFKFEPSNERYLRRIFNEEITRELISSAEVITEIEHEWEQL 953

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
            + DR  L  +I  +G++   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V  L  
Sbjct: 954  DKDREAL-RQIFPTGENKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRDLLA 1012

Query: 1005 RLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
            +  +V GED LS++A +NATL F  L+RST  SKR+ +E+RL+ EAFEW+IGEIE+RF Q
Sbjct: 1013 KCVIVVGEDKLSIQANQNATLLFQCLVRSTLCSKRLAEEYRLSSEAFEWLIGEIETRFQQ 1072

Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS 1124
            +   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K  K PS
Sbjct: 1073 AQAQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKNPKAPS 1132

Query: 1125 LSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
            L+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYE
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVNVYYE 1192

Query: 1185 MPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            MPD D  P +ISPWLLRIEL+R+ M DK+L+M  +AEK+N  F DDL CIFNDDNA+KL+
Sbjct: 1193 MPDFD--PTRISPWLLRIELDRKRMTDKRLTMEQIAEKVNAGFGDDLNCIFNDDNAEKLV 1250

Query: 1245 LRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV--------------- 1286
            LRIRIMN +  K    +E     EDD+FL+ IE+NML++M L+G+               
Sbjct: 1251 LRIRIMNSDDSKFSEEEEQVDKMEDDMFLRCIEANMLSDMTLQGIESIGKVYMHLPQTDQ 1310

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                      L+ V+   DVD  RT SN + EI  VLGIEAVR+
Sbjct: 1311 KKRIVVTEAGEFKAIAEWLLETDGTQLMRVLSERDVDPVRTYSNDICEIFAVLGIEAVRK 1370

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLE 1441
            D+LL+AA  AE D LRGV+ENI+LGQL  +GTG   L L+ E  K  IE+ L S   G+ 
Sbjct: 1431 DVLLEAAGHAEVDPLRGVSENIILGQLPRMGTGCFDLLLDAEKCKQGIEIPL-SIGAGMG 1489

Query: 1442 FGM--TPARSPVSG-----TPYHDGMMSPGY--LFSPNLRLSPVTDAQFSPYVGGMAFSP 1492
             GM    A +P++G     TP++  + +P Y  ++SP L       +  +P  GG AFSP
Sbjct: 1490 TGMFFGSAATPMAGMSPQMTPWNQ-VATPAYGSVWSPGL------GSGMTP--GGPAFSP 1540

Query: 1493 TSSPGYSPSSPGYSPS 1508
            + +   S  SPGYSP+
Sbjct: 1541 SVASDASGLSPGYSPA 1556


>gi|324120532|dbj|BAJ78657.1| RNA polymerase II largest subunit [Galloisiana yuasai]
          Length = 1904

 Score = 1732 bits (4486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 884/1637 (54%), Positives = 1127/1637 (68%), Gaps = 131/1637 (8%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A V  V+ VQFGIL+PDEIR+MSV +  I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPVRSVKRVQFGILAPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  N  ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L    + K K+ +
Sbjct: 66   CQTCAGNQTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKMLVSPTNPKIKEVV 125

Query: 126  KIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQD-----GEEPLKKNKGGCGAQQPKL 178
                  P+ RL  + D CK K  CEGGDE+D+   +      ++P K   GGCG  QP +
Sbjct: 126  MKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDNPDDPNSQQPRKAGHGGCGRYQPSI 185

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
               G+ + AE+K     N+D +      E+K +L+AERV  +LK I+DE+C +LG++ K+
Sbjct: 186  RRIGLDLTAEWK---HINEDSQ------EKKISLSAERVWEILKHITDEECFILGMDHKF 236

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARPDWMI+ VLP+PP  VRP+          DDLTH+LA II+ N  L R E+ GA AH+
Sbjct: 237  ARPDWMIITVLPVPPLCVRPAVVMYGSARNQDDLTHKLADIIKSNNELVRNEQAGAAAHV 296

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ISE  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFS
Sbjct: 297  ISENIKMLQFHVATLIDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 356

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVITPDP + IDQ+GVP SIA N+T+PE VTP+NI++++ELV  G    PG   AKYI
Sbjct: 357  ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPG---AKYI 413

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            +RD+G+R+DLR+  KSSD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+
Sbjct: 414  VRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPW 473

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQ
Sbjct: 474  STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQ 533

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL   RK+TKRD F+EK+  MNILM+   +DGK+PQP+I+KP+PLWTGKQVF+LIIP  
Sbjct: 534  DTLTAVRKMTKRDVFLEKEQMMNILMFLPIWDGKMPQPSIMKPKPLWTGKQVFSLIIPGN 593

Query: 589  INLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
            +N+ RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E
Sbjct: 594  VNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLE 653

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
            +G +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++
Sbjct: 654  LGHEVCGQFYGNIQTVINTWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQK 713

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS I
Sbjct: 714  AHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNI 773

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFH
Sbjct: 774  NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH 833

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+   
Sbjct: 834  AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGE 893

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
             +E Q L ++K+    F+K F+FE   E +      +E + +L    ++    + E ++L
Sbjct: 894  TVEFQNLPTIKLSNKSFEKKFKFEPTNERYLRRVFNEEILKELMGSGDVISELEKEWEQL 953

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
              DR  L  +I  SG+S   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V  L  
Sbjct: 954  NRDREAL-RQIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVTNLLR 1012

Query: 1005 RLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
            +  +V GED LS  A  NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q
Sbjct: 1013 KCIIVAGEDHLSRSANANATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQ 1072

Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS 1124
            + V+PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PS
Sbjct: 1073 AQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132

Query: 1125 LSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
            L+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYE
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVNVYYE 1192

Query: 1185 MPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            MPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+
Sbjct: 1193 MPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLV 1250

Query: 1245 LRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV--------------- 1286
            LRIRIMN +  K +  +E+    EDD+FL+ IE+NML++M L+G+               
Sbjct: 1251 LRIRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1310

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     +++ V+   DVD  RT SN + EI  VLGIEAVR+
Sbjct: 1311 KKRIVVTETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRK 1370

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLE 1441
            D+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  IE+ +      + 
Sbjct: 1431 DVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDAEKCKAGIEIPMNVGAGMMG 1490

Query: 1442 -----FG--MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS 1494
                 FG   TP+ SP   TP+     +P Y++SP    S +  +  +P  GG +FSP+ 
Sbjct: 1491 GGGMLFGSAQTPSMSP-HHTPWSS---TPAYMWSP----SNLLGSGMTP--GGPSFSPSG 1540

Query: 1495 SPGYSPSSPGYSPSSP-------------GYSPTSPG--------------------YSP 1521
            +   S  SPGYSP SP              Y P+  G                     +P
Sbjct: 1541 ASDASGLSPGYSPYSPQLGSPSSPGPSMSPYIPSPAGGGMSPSYSPSSPAFPPTSPSLTP 1600

Query: 1522 TSPGYSPTSPGYSPTSP 1538
             SP YSPTSP YSPTSP
Sbjct: 1601 ASPNYSPTSPSYSPTSP 1617


>gi|407925500|gb|EKG18511.1| RNA polymerase II heptapeptide repeat eukaryotic [Macrophomina
            phaseolina MS6]
          Length = 1756

 Score = 1731 bits (4482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 925/1786 (51%), Positives = 1196/1786 (66%), Gaps = 143/1786 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGK--PKPGGLSDPRLGTIDR 62
            F  S A +  ++ +QFG+L P EI++MSV  I + ET +  K  P+ GGL+DP+LG+IDR
Sbjct: 6    FAASSAPLKSIQEIQFGLLDPAEIQEMSVAHIIYPETMDEAKQRPREGGLNDPKLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
               C TC  NM ECPGHFGH+EL  P+FH+GF+  +  ++  VC NC KIL DE +H+FK
Sbjct: 66   AYSCATCGENMQECPGHFGHIELHTPVFHVGFINKIKKLLECVCHNCGKILGDESEHQFK 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQP 176
             AL++R+PK R + I   CK K  C+    +D P  D E    KNK      GGCG +QP
Sbjct: 126  DALRLRDPKKRFEAIWKVCKPKAVCQ----MDQPSDDFEGGAPKNKKPQIQHGGCGNRQP 181

Query: 177  KLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
            +L  +G+K++  +K Q+ +++++ + PE    K+ +  + VL + K I+DE    LGLN 
Sbjct: 182  ELRKDGLKLVGTWKPQKGEDEEEARQPE----KRVIKPQDVLNIFKLITDESLVTLGLNV 237

Query: 237  KYARPDWMILQVLPIPPPP-------------VRPSDDLTHQLAMIIRHNENLRRQERNG 283
             +ARP+WMIL +LP+PPPP             +R  DDLT++LA IIR N +++R    G
Sbjct: 238  NFARPEWMILTMLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLADIIRANASIKRCHTEG 297

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGK 343
            A  H+I +F  LLQ+H+ATY DN+L GQP+A Q+SGR +K+I  RLK K+GR+RGNLMGK
Sbjct: 298  AAQHVIDDFEVLLQWHVATYMDNDLAGQPQAQQKSGRALKTIRGRLKGKDGRLRGNLMGK 357

Query: 344  RVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKT 403
            RVDFSARTVIT DP +++D++GVP SIA  LTYPETVTP+NI +L ELV+ GP+  PG  
Sbjct: 358  RVDFSARTVITGDPNLDLDEVGVPRSIARTLTYPETVTPFNIAKLHELVKNGPNEHPG-- 415

Query: 404  GAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
             AKY+IRDDG R+DLR+ K++ +  L  G+KVERH+  GDF++FNRQPSLHK S+MGHR+
Sbjct: 416  -AKYVIRDDGTRIDLRHHKRAGEIQLAYGWKVERHIVSGDFIIFNRQPSLHKESMMGHRV 474

Query: 464  KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
            ++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV++L MVP  IVSPQ N P+
Sbjct: 475  RVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVMQLCMVPLNIVSPQRNGPL 534

Query: 524  MGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNL 583
            MGIVQDTL G  K+  RD F+ K++ MNIL+W  D+DG +PQP ILKPRP WTGKQ+ +L
Sbjct: 535  MGIVQDTLCGIYKMCHRDVFLTKEMVMNILLWVPDWDGVIPQPAILKPRPRWTGKQLLSL 594

Query: 584  IIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
             IP  INL +    HA  D       D+ V I  GEL+ G   KK +G S+G +IH ++ 
Sbjct: 595  AIP-DINLVKPGKTHAPID-------DSGVVIIGGELMYGLFNKKIVGASSGGIIHTVYN 646

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
            E G +AA  F   +Q +VNYWLL + FSIGIGDTI DA T   I + I + K  V  +  
Sbjct: 647  EKGWEAAVGFFNGSQRIVNYWLLHHGFSIGIGDTIPDALTTAKIEEAIDEQKEEVARITD 706

Query: 704  QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
             A    L+P PG T  E+FE+KV+  LN ARD AG+  +KS+++ NN  AM  +GSKGS 
Sbjct: 707  DATQDKLDPLPGMTKRETFESKVSVCLNKARDNAGAVTEKSVAKCNNAIAMAASGSKGST 766

Query: 764  INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
            INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY P +RGFV+NSYLRGLTP EFFF
Sbjct: 767  INISQMTALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPAARGFVQNSYLRGLTPSEFFF 826

Query: 824  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
            HAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGDV+QF+YGEDG+D 
Sbjct: 827  HAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDVVQFVYGEDGLDG 886

Query: 884  VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            V+IE QT D +    ++F + F   + +   + +  + E  D +    E++ +FD E  +
Sbjct: 887  VFIEKQTCDFVNCSDAQFKRKFYVNVMDPQTSLSSDILEKADAIAGDIEVQRLFDEEYAQ 946

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            LE DR  +   +    D    LP+N++R+I  A+  F++     SD+HP E +  V ++ 
Sbjct: 947  LEEDRIYV-RNLTNDADDQRQLPLNIQRIIETAKSKFRIKDGTRSDLHPAEAIPKVREVL 1005

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
            +RL VV G+D LS EAQ+NAT  F   LRS  A KR+++E+ L + AFE V+G++E+RF 
Sbjct: 1006 DRLVVVRGDDSLSREAQENATFLFKAQLRSRLAFKRLVREYSLNKLAFENVLGDLENRFN 1065

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            +++V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVAK IKTP
Sbjct: 1066 RAIVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKNIKTP 1125

Query: 1124 SLSVFLKPGVNSTKER----AKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
            S+ V+    ++++ E+    AK ++  +E+TTLRSVTE  E++YDPD   T+IE D + V
Sbjct: 1126 SMKVYTTTALDTSDEKKRTEAKLLRSRIEHTTLRSVTECVELYYDPDIQSTVIEADADLV 1185

Query: 1180 KSYYEMPD---EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
            +SY+ +PD   EDI  +  S WL+RI LNR  ++DK L++  VA +I +E+  +L  IF+
Sbjct: 1186 ESYFIIPDDTQEDIDSQ--SKWLMRIVLNRGRLLDKGLTVPQVATRIKEEYHKNLAVIFS 1243

Query: 1237 DDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---------- 1286
            D+NA++L++RIR++  ++ K E  +E+ E    L  +E  +L ++ LRGV          
Sbjct: 1244 DNNAEELVIRIRLIKHDSSKEEEGEENDEK--LLGMLEERLLDDLTLRGVPGVERAFINS 1301

Query: 1287 ------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGI 1316
                                           L  V+  E VDA RT SN+  EII+V GI
Sbjct: 1302 GQKQVTRDDGTLYMAKSDECTEWFLDTTGTALARVLTVEGVDASRTYSNNFFEIIQVFGI 1361

Query: 1317 EAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCS 1376
            EA R ALL E   V++FDGSYVN+RHLA+L D MT RG +MA+TRHGINR DTG +MRCS
Sbjct: 1362 EATRTALLKEFTQVLAFDGSYVNHRHLALLVDVMTARGMIMAVTRHGINRADTGALMRCS 1421

Query: 1377 FEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSY 1436
            FEETV+ILLDAA   E D  RGV+ENIMLGQLAP GTG+  + ++ E+L           
Sbjct: 1422 FEETVEILLDAAACGELDDCRGVSENIMLGQLAPAGTGEMDIMVDRELLNTLAS------ 1475

Query: 1437 MEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLR---LSPVTDAQFSPYV--GGMAFS 1491
             +   +G+ P  +   G    DG  +P  + SP        P   A FSP V  GG    
Sbjct: 1476 -DNARYGLMPGVAAAPGY-IADGAATPYDIGSPTHEGAFAGPDYGASFSPMVQAGGDDSG 1533

Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP--GYSPTSPGYSPTSPTYSPSSPGYSP 1549
              +S G S S  G SP    Y+  SPGY+PTSP  G SPTSPGYSPTSP YSP+SPG + 
Sbjct: 1534 GFTSYG-SFSDGGMSP----YAGRSPGYAPTSPFSGQSPTSPGYSPTSPGYSPTSPGLNL 1588

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP------------------ 1591
            TSP +  TSP++SPTSP YSPTSP YSPTSP YSPTSP+Y+                   
Sbjct: 1589 TSPRFGGTSPAFSPTSPGYSPTSPGYSPTSPGYSPTSPAYNSLSPTSPSYSPTSPSYSPT 1648

Query: 1592 -----TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1646
                 TSP+Y   S +YSPTSP+YSPTSP YSPTSPAYSPTSP YSPTSP +   S   S
Sbjct: 1649 SPSSPTSPAYMARS-AYSPTSPSYSPTSPKYSPTSPAYSPTSPQYSPTSPQFGGGSDRRS 1707

Query: 1647 PTSPS--YSPTSPSYSPTSP--AYSPTSPG---YSPTSPSYSPTSP 1685
            PTSP+  YSPTSP YSPTSP  AY PTSPG   YS TSP YSPTSP
Sbjct: 1708 PTSPAVGYSPTSPIYSPTSPGTAYPPTSPGTGQYSATSPKYSPTSP 1753



 Score =  178 bits (451), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/192 (57%), Positives = 128/192 (66%), Gaps = 17/192 (8%)

Query: 1617 YSPTSPAYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 1674
            Y+  SP Y+PTSP    SPTSP YSPTSP YSPTSP  + TSP +  TSPA+SPTSPGYS
Sbjct: 1549 YAGRSPGYAPTSPFSGQSPTSPGYSPTSPGYSPTSPGLNLTSPRFGGTSPAFSPTSPGYS 1608

Query: 1675 PTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA----------SPYSPTS 1724
            PTSP YSPTSP YSPTSP+YN  S         SPS    SP+          S YSPTS
Sbjct: 1609 PTSPGYSPTSPGYSPTSPAYNSLSPTSPSYSPTSPSYSPTSPSSPTSPAYMARSAYSPTS 1668

Query: 1725 PNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYS 1784
            P+YSPTS  YSPTSP+YSP+SP YSP+SP   GGG+   SP+    SP+ GYSP++P YS
Sbjct: 1669 PSYSPTSPKYSPTSPAYSPTSPQYSPTSP-QFGGGSDRRSPT----SPAVGYSPTSPIYS 1723

Query: 1785 PSSTSQYTPQTN 1796
            P+S     P T+
Sbjct: 1724 PTSPGTAYPPTS 1735



 Score =  177 bits (449), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 121/274 (44%), Positives = 149/274 (54%), Gaps = 51/274 (18%)

Query: 1543 SSPGYSPTSPA--YSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1598
            ++PGY     A  Y   SP++  +   P Y     S+SP   +    S  ++        
Sbjct: 1488 AAPGYIADGAATPYDIGSPTHEGAFAGPDYGA---SFSPMVQAGGDDSGGFTSYGSFSDG 1544

Query: 1599 TSPSYSPTSPAYSPTSP--AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
                Y+  SP Y+PTSP    SPTSP YSPTSP YSPTSP  + TSP +  TSP++SPTS
Sbjct: 1545 GMSPYAGRSPGYAPTSPFSGQSPTSPGYSPTSPGYSPTSPGLNLTSPRFGGTSPAFSPTS 1604

Query: 1657 PSYSPTSPAYSPTSPGYSPTSPSYSP-----------------------------TSPTY 1687
            P YSPTSP YSPTSPGYSPTSP+Y+                                  Y
Sbjct: 1605 PGYSPTSPGYSPTSPGYSPTSPAYNSLSPTSPSYSPTSPSYSPTSPSSPTSPAYMARSAY 1664

Query: 1688 SPTSPSYNPQSAKYSP-SLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPS--YSPS 1744
            SPTSPSY+P S KYSP S AYSP+SP+      YSPTSP +   S   SPTSP+  YSP+
Sbjct: 1665 SPTSPSYSPTSPKYSPTSPAYSPTSPQ------YSPTSPQFGGGSDRRSPTSPAVGYSPT 1718

Query: 1745 SPTYSPSSPYNA----GGGNPDYSPSSPQYSPSA 1774
            SP YSP+SP  A      G   YS +SP+YSP++
Sbjct: 1719 SPIYSPTSPGTAYPPTSPGTGQYSATSPKYSPTS 1752


>gi|268553547|ref|XP_002634760.1| C. briggsae CBR-RPB-1 protein [Caenorhabditis briggsae]
 gi|60393735|sp|P35074.2|RPB1_CAEBR RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit B1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit
          Length = 1853

 Score = 1727 bits (4474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 877/1626 (53%), Positives = 1138/1626 (69%), Gaps = 117/1626 (7%)

Query: 10   AEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
            A +  V  VQFGIL P+EI++MSV  +E  E  E GKPK GGL DPR G IDR+ +C TC
Sbjct: 10   APLRTVCRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKMGGLMDPRQGVIDRRGRCMTC 69

Query: 70   TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR- 128
              N+ +CPGHFGHLELAKP+FHIGF+   L I+R VCF C ++L D+ + +    LK   
Sbjct: 70   AGNLTDCPGHFGHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKTNPRVMDILKKTS 129

Query: 129  -NPKNRLKKILDACKNKTKCEGG--------DEIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
             NPK RL  I D CK+K+ CEG         D++D P  +G    KK   GCG  QP   
Sbjct: 130  GNPKKRLALIYDLCKSKSVCEGAAEKEDGLPDDMDDPMNEG----KKVPAGCGRYQPSYR 185

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
              G+ + AE+K  +  N+D +      ERK  LTAERVL V K+I+DED  ++G++P++A
Sbjct: 186  RVGIDINAEWK--KNVNEDTQ------ERKIMLTAERVLEVFKQITDEDILVIGMDPQFA 237

Query: 240  RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RP+WMI  VLP+PP  VRP+          DDLTH+L+ II+ N+ L+R E NGA AH++
Sbjct: 238  RPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVL 297

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            ++  +LLQ+H+AT  DN +PG P ATQ+ GRP+KSI  RLK KEGRIRGNLMGKRVDFSA
Sbjct: 298  TDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSA 357

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVIT DP + ID +GVP +IA NLT+PE VTP+N+++L+ELV  G    PG   AKYII
Sbjct: 358  RTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPG---AKYII 414

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            R++G R+DLRY  +++D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+S
Sbjct: 415  RENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWS 474

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLSVTSPYNADFDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQD
Sbjct: 475  TFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQD 534

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   R +TKRD FI+    M++LM+   +DGKVPQP ILKP+PLWTGKQVF+LIIP  +
Sbjct: 535  TLCAVRMMTKRDIFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 594

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            N+ RT + H D+ D G    ++ GDT V IE GELLSG +C KT+G S G+L+HV+  E+
Sbjct: 595  NVLRTHSTHPDSEDSGPYKWISPGDTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVALEL 654

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G + A  F  H Q ++N WLL+   +IGIGDTIAD  T   I +TI KAK +V ++I++A
Sbjct: 655  GHEIAANFYSHIQTVINAWLLREGHTIGIGDTIADQSTYLDIQNTIRKAKQDVVDVIEKA 714

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FENKVNQ+LN ARD  GSSAQKSLSE NN K+MV +GSKGS IN
Sbjct: 715  HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKIN 774

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHA
Sbjct: 775  ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 834

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNSL  ++Q  YGEDG+D +W
Sbjct: 835  MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 894

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDD-LKTIKELRD---VFDAEV 941
            +E+Q + ++K   + F++ FR ++ +      ++ + Y +D ++ I+E +D   + ++E 
Sbjct: 895  VENQNMPTMKPNNAVFERDFRMDLTDN----KFLRKNYSEDVVREIQEAQDGISLVESEW 950

Query: 942  QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
             +LE DR +L  +I   GD+   LP NL+RLIWNAQK FKVD R+P ++ P+ V+  V +
Sbjct: 951  SQLEEDR-RLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRE 1009

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L ++L +V G D +S +AQ NATL  NILLRST  +K++    +L  EAF+W++GEIE+R
Sbjct: 1010 LSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETR 1069

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K++K
Sbjct: 1070 FQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLK 1129

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPSL+VFL        E+AK+V C LE+TTL+ VT  T ++YDPDP  T+I ED E+V  
Sbjct: 1130 TPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSI 1189

Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            +YEMPD D+   + SPWLLRIEL+R+ MVDKKL+M  +A++I+  F  D+  I+ DDNA+
Sbjct: 1190 FYEMPDHDLT--RTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGQDVHTIYTDDNAE 1247

Query: 1242 KLILRIRIMNDE--APKGELNDESAEDDVFLKKIESNMLTEMALRGV------------- 1286
            KL+ R+RI  ++  A   E   +  EDDVFL+ IE+NML+++ L+G+             
Sbjct: 1248 KLVFRLRIAGEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNT 1307

Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                        LL V+    +D  RTTSN + EI EVLGIEAV
Sbjct: 1308 DDKKRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAV 1367

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R+++  E+  VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR + G +MRCSFEE
Sbjct: 1368 RKSIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEE 1427

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEG 1439
            TVDIL++A+V AE D ++GV+ENIMLGQLA  GTG   L L+ E  K+ +E+     M  
Sbjct: 1428 TVDILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKHGMEIPQNVVMGA 1487

Query: 1440 LEFG----------MTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGG 1487
              +G           +PA SP +   TP + G  SP    SP+   SP  +       GG
Sbjct: 1488 GIYGGGFAGSPSREFSPAHSPWNSGVTPNYSGPWSPTGGMSPSAGFSPAGNLD-----GG 1542

Query: 1488 MAFSPTSSPGYSPSSPG-----YSPSSPGYSPTSPG-YSPTSPGYSPTSPGYSPTSPTYS 1541
               SP +  G+SP+SPG      SP +P Y   SPG YSP SPG+S TSP YSPTSP+YS
Sbjct: 1543 A--SPFNEGGWSPASPGDPLGALSPRTPAYGGMSPGVYSPASPGFSMTSPHYSPTSPSYS 1600

Query: 1542 PSSPGY 1547
            P+SP +
Sbjct: 1601 PTSPAH 1606



 Score =  169 bits (427), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/134 (70%), Positives = 110/134 (82%), Gaps = 14/134 (10%)

Query: 1539 TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYS----------PTSPSYSPTSPSYSPTSPS 1588
            TYSP+SP YSPTSP YSPTSP+YSPTSPSY           P+SP+YSPTSPSYSPTSP 
Sbjct: 1685 TYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQ 1744

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSP-AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
            YSPTSP YSP+SP+Y+P+SP Y+PTSP A+S  SP YSPTSP+YSPTSPSY+P+SP YSP
Sbjct: 1745 YSPTSPQYSPSSPTYTPSSPTYNPTSPRAFS--SPQYSPTSPTYSPTSPSYTPSSPQYSP 1802

Query: 1648 TSPSYSPTSPSYSP 1661
            TSP+Y+P SP+  P
Sbjct: 1803 TSPTYTP-SPADQP 1815



 Score =  130 bits (326), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/152 (55%), Positives = 107/152 (70%), Gaps = 28/152 (18%)

Query: 1651 SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS----------PTSPTYSPTSPSYNPQSAK 1700
            +YSPTSP+YSPTSP YSPTSP YSPTSPSY           P+SPTYSPTSPSY+P S +
Sbjct: 1685 TYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQ 1744

Query: 1701 YSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGG 1759
            YSP+      SP+ SP+SP Y+P+SP Y+PTS   + +SP YSP+SPTYSP+SP      
Sbjct: 1745 YSPT------SPQYSPSSPTYTPSSPTYNPTSPR-AFSSPQYSPTSPTYSPTSP------ 1791

Query: 1760 NPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQ 1790
               Y+PSSPQYSP++  Y+PS P   P +++Q
Sbjct: 1792 --SYTPSSPQYSPTSPTYTPS-PADQPGTSNQ 1820


>gi|406865480|gb|EKD18522.1| DNA-directed RNA polymerase 2 largest subunit [Marssonina brunnea f.
            sp. 'multigermtubi' MB_m1]
          Length = 1738

 Score = 1727 bits (4472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 918/1767 (51%), Positives = 1194/1767 (67%), Gaps = 150/1767 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            F +S A +  ++ VQFG+LSP+EI+ MSV  I + ET +  R KP+  GL+DPRLG+IDR
Sbjct: 6    FTHSDAPLRTIQEVQFGLLSPEEIKNMSVCHILYPETMDETRTKPRDQGLNDPRLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC TC  NM+ECPGHFGH+ELAKP++H GF+K    ++  VC NC ++L D  +  +K
Sbjct: 66   QFKCATCDQNMSECPGHFGHIELAKPVYHPGFLKKTKKLLEMVCHNCGRVLLDRSNPAYK 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDG----EEPLKKNKGGCGAQQPKL 178
             A+ IR+PK R   I   CK K  C+   +    G DG    ++  K+  GGCG  QP++
Sbjct: 126  AAVNIRDPKRRFDTIWRLCKPKMICDS--DASQEGADGSVDPKDLAKRAHGGCGNTQPEV 183

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
                +++   +K  + ++++  Q PE    K+ +T E  L V + IS  +   LGL+  Y
Sbjct: 184  RQVALELFGTWKVPKDEDNEGAQ-PE----KRAITPEMALNVFRSISTSEIFDLGLSNDY 238

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+WMI+ V             +      +R  DDLT++L  IIR N N+R+ ++ G+P
Sbjct: 239  ARPEWMIITVLPVPPPPVRPSISMDGTSQGMRGEDDLTYKLGDIIRANGNVRQAQQEGSP 298

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
            AHI+S+F +LLQ+H+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRV
Sbjct: 299  AHILSDFEKLLQYHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRV 358

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT DP +++D++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG   A
Sbjct: 359  DFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG---A 415

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY++R DG R+DLR+ K++    LE G+KVERH+ DGDF++FNRQPSLHK S+MGHR+++
Sbjct: 416  KYVVRSDGSRIDLRHHKRAGAISLEYGWKVERHIVDGDFIVFNRQPSLHKESMMGHRVRV 475

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAE++ L MVP  IVSPQ N P+MG
Sbjct: 476  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIMNLCMVPLNIVSPQRNGPLMG 535

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDTL G  K+ +RD F+ K+  MNIL+W  ++DG +PQP ILKPRP WTGKQV ++II
Sbjct: 536  IVQDTLAGVYKMCRRDCFVTKEHLMNILLWVPEWDGVIPQPAILKPRPRWTGKQVVSMII 595

Query: 586  PKQINLFRTAAWHAD---NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            PK +NL        D    D G+L        + +GEL+ G + KK +G ++G +IH+I+
Sbjct: 596  PKIVNLNMPNDGREDAPLKDDGLL--------VHEGELMYGLMAKKNIGATSGGIIHIIF 647

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E+G DAA  F    Q +VNYWLL N FSIGIGDT+ D  T+  I   I   K  V  L 
Sbjct: 648  NEMGSDAAMAFFNGCQRVVNYWLLHNGFSIGIGDTVPDKSTIAKIEGAIGAQKEEVAKLT 707

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
              A    LE  PG  + E+FE++V++ LNTARD+AG+  + SL ++NN   M  +GSKGS
Sbjct: 708  AMATANQLESLPGMNVRETFESQVSKALNTARDQAGTKTEGSLKDNNNAVTMARSGSKGS 767

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
             INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFF
Sbjct: 768  TINISQMTALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFF 827

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D
Sbjct: 828  FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLD 887

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFE-MDEEN-WNPNYMLQEYIDDLKTIKELRDVFDAE 940
             V IE Q +D + +   +F   +R + MD+ N  +P+  L E  +DL    E++ + D E
Sbjct: 888  GVHIEKQKVDHINLDDKKFAARYRLDVMDDRNPISPD--LLERANDLAGDLEMQQLLDEE 945

Query: 941  VQKLEADRYQLA-TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
             ++L  DR  L         D S  LP+N+ R+I +A++ FKVD    SD+HP +V+ AV
Sbjct: 946  YEQLLEDRKMLRYVNWKKKDDESMQLPLNIVRIIDSAKRLFKVDDSHRSDLHPADVIPAV 1005

Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
             +L +R+ +V GED LSVEAQ NATL     +RS  A KRV  + RL + AF  V+GEIE
Sbjct: 1006 RQLLDRMIIVRGEDELSVEAQTNATLLIKAQVRSRLAYKRVALQMRLNKLAFAHVLGEIE 1065

Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
            +RF+++LV PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA  
Sbjct: 1066 NRFMRALVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATN 1125

Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
            IKTPS+ V+L+   N  +E AK ++ A+E+T LRSVT ATE+++DPD   T IE+D++ V
Sbjct: 1126 IKTPSMVVYLEG--NGNQESAKLLRSAVEHTNLRSVTAATEIYHDPDIQSTTIEDDLDMV 1183

Query: 1180 KSYYEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDD 1238
            +SY+ +PD+   AP+  S WLLR+ L+R+ M+DK L +  VA KI + +  DL  IF+D+
Sbjct: 1184 ESYFIIPDDSHDAPDNQSRWLLRLVLDRQKMLDKGLRVEDVATKIKEAYQKDLAVIFSDN 1243

Query: 1239 NADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------------ 1286
            NA++ ++RIR++N    K E  D+  E D+ LK++E+++L  + LRGV            
Sbjct: 1244 NAEEQVIRIRMINQSDSKFE--DDDIEQDIMLKRLEAHILDTLTLRGVKGVDRAFLNKET 1301

Query: 1287 --------NLLAV----MCHE-----------------DVDARRTTSNHLIEIIEVLGIE 1317
                     LLA      C E                  VD  RT SNH I++ +V GIE
Sbjct: 1302 KLIETPAGGLLASKDDPRCEEWYLDTSGTELGDVLTIPGVDTTRTYSNHFIQVFQVFGIE 1361

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            A R AL+ EL  V++FDGSYVN+RHLA+L D MT RGHLMAITRHGINR DTG +MRCSF
Sbjct: 1362 ATRSALMRELTQVLAFDGSYVNHRHLALLVDVMTSRGHLMAITRHGINRADTGALMRCSF 1421

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIE------L 1431
            EETV+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  + L+ +ML+  I       L
Sbjct: 1422 EETVEILLEAAAVGELDDCRGISENVMLGQLAPMGTGELDVLLDPKMLETVISDNGRMGL 1481

Query: 1432 QLPSYMEGLEFGMTPARSPV-SGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYV----- 1485
                 ++G + G   A +P  S +P  DG    GYL       +P  D+ FSP       
Sbjct: 1482 MPGLAVKGADGG---AATPYDSSSPLSDG----GYLGIG----TPDYDSNFSPIQSGGSA 1530

Query: 1486 --GGMAFSPTSSPGYSPSSPGYSPSSP--GYSPTSP-GYSPTSPGYSPTSPGYSPTSPTY 1540
              GG A + + + G+S  SP Y+  SP  GYSPTSP   SP SPG+SPTSPGYSPTSP  
Sbjct: 1531 TPGGFATAYSDANGFSNQSP-YTARSPGGGYSPTSPFSTSPVSPGFSPTSPGYSPTSPMM 1589

Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSP----- 1594
            + SSPGY+  SP +SP SP+++PTSP+YSPTSPS+ SPTSPSYSPTSP+YSPTSP     
Sbjct: 1590 NVSSPGYNVASPRFSPVSPAFTPTSPAYSPTSPSFVSPTSPSYSPTSPNYSPTSPNLHVS 1649

Query: 1595 ------------------SYSPTSPSYS--PTSP--AYSPTSPAYSPTSPAYSPTSPSYS 1632
                              +YSPTSP++S   TSP    SPTSP YSP+SP +SPTSP+  
Sbjct: 1650 PSSPSYSPTSPSYSPTSPNYSPTSPNFSGTKTSPGSGLSPTSPVYSPSSPNWSPTSPAQG 1709

Query: 1633 --PTSPSYSPTSPSYSPTSPSYSPTSP 1657
               TSP YSPTSPSYSPTSP +SPTSP
Sbjct: 1710 GVATSPKYSPTSPSYSPTSPQFSPTSP 1736



 Score =  127 bits (319), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 105/230 (45%), Positives = 138/230 (60%), Gaps = 37/230 (16%)

Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS--YSPTSP-SYSPTSPS 1651
            ++SP     S T   ++    AYS  +  +S  SP Y+  SP   YSPTSP S SP SP 
Sbjct: 1520 NFSPIQSGGSATPGGFAT---AYSDAN-GFSNQSP-YTARSPGGGYSPTSPFSTSPVSPG 1574

Query: 1652 YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS 1711
            +SPTSP YSPTSP  + +SPGY+  SP +SP SP ++PTSP+Y+P S  +      SP+S
Sbjct: 1575 FSPTSPGYSPTSPMMNVSSPGYNVASPRFSPVSPAFTPTSPAYSPTSPSF-----VSPTS 1629

Query: 1712 PRLSPASP-YSPTSPNY---------SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNP 1761
            P  SP SP YSPTSPN          SPTS SYSPTSP+YSP+SP +S +      G +P
Sbjct: 1630 PSYSPTSPNYSPTSPNLHVSPSSPSYSPTSPSYSPTSPNYSPTSPNFSGTKTSPGSGLSP 1689

Query: 1762 D---YSPSSPQYSPSA----------GYSPSAPGYSPSSTSQYTPQTNRD 1798
                YSPSSP +SP++           YSP++P YSP+S  Q++P + R+
Sbjct: 1690 TSPVYSPSSPNWSPTSPAQGGVATSPKYSPTSPSYSPTS-PQFSPTSPRN 1738



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 104/180 (57%), Gaps = 26/180 (14%)

Query: 1614 SPAY-SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSP-AYSPT 1669
            +P Y S  SP  S  S +    + +YS  +  +S  SP Y+  SP   YSPTSP + SP 
Sbjct: 1514 TPDYDSNFSPIQSGGSATPGGFATAYSDAN-GFSNQSP-YTARSPGGGYSPTSPFSTSPV 1571

Query: 1670 SPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYS 1728
            SPG+SPTSP YSPTSP  + +SP YN              +SPR SP SP ++PTSP YS
Sbjct: 1572 SPGFSPTSPGYSPTSPMMNVSSPGYNV-------------ASPRFSPVSPAFTPTSPAYS 1618

Query: 1729 PTSSSY-SPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
            PTS S+ SPTSPSYSP+SP YSP+SP            S      S  YSP++P YSP+S
Sbjct: 1619 PTSPSFVSPTSPSYSPTSPNYSPTSP-----NLHVSPSSPSYSPTSPSYSPTSPNYSPTS 1673


>gi|324120574|dbj|BAJ78678.1| RNA polymerase II largest subunit [Protohermes grandis]
          Length = 1633

 Score = 1727 bits (4472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 911/1666 (54%), Positives = 1164/1666 (69%), Gaps = 121/1666 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I + ET E G+PK GGL DPR G IDR  +
Sbjct: 5    SKAPIRSVKKVQFGILSPDEIRRMSVTEGGIRYAETMEGGRPKLGGLMDPRQGVIDRNSR 64

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM+ECPGHFGH++L KP+FHIGF+   + I+R VCF CSK+L    + K K+  
Sbjct: 65   CQTCAGNMSECPGHFGHIDLCKPVFHIGFIVKTIKILRCVCFYCSKLLVSPTNPKIKEIV 124

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQD----GEEPLKKNKGGCGAQQPKLT 179
            +K +  P+ RL  + D CK K  CEGGDE+D+  ++    G    +   GGCG  QP + 
Sbjct: 125  MKSKGQPRKRLVFVYDLCKGKNICEGGDEMDIAKEEDAAAGRSAARPTHGGCGRYQPSIR 184

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
              G+ + AE+K     N+D +      E+K +LTAERV  +LK ISDE+C +LG++PK+A
Sbjct: 185  RTGLDLSAEWK---HINEDSQ------EKKISLTAERVWEILKHISDEECFILGMDPKFA 235

Query: 240  RPDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RPDWMI+ VLP+PP             +  DDLTH+L+ I++ N +L R E  GA AH+I
Sbjct: 236  RPDWMIITVLPVPPLPVRPAVVMYGSAKNQDDLTHKLSDIVKANADLARNEAAGAAAHVI 295

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            +E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSA
Sbjct: 296  AENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 355

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVITPDP + IDQ+GVP SIA NLT+PE VTP+NIE++ ELV+ G    PG   AKYI+
Sbjct: 356  RTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIEKMIELVQRGNSQYPG---AKYIV 412

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD+G+R+DLR+  K SD HL+ GY+VERH+ D D V+FNRQP+LHKMS+MGHR+K++P+S
Sbjct: 413  RDNGERIDLRFHPKPSDLHLQCGYRVERHIKDDDLVIFNRQPTLHKMSMMGHRVKVLPWS 472

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  L + P+ I++PQ+N+PVMGIVQD
Sbjct: 473  TFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHITPRQIITPQANKPVMGIVQD 532

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK+TKRD FIEK+  MNILM+   +DGK+PQP ILKP+PLWTGKQVF+LIIP  +
Sbjct: 533  TLTAVRKMTKRDVFIEKEQMMNILMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNV 592

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            NL RT + H D+ D+G    ++ GDT V +E GEL+ G LCKKTLG S GSL+H+ + E+
Sbjct: 593  NLIRTHSTHPDDEDEGPYKWISPGDTKVMVEHGELIMGILCKKTLGASAGSLLHICFLEL 652

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A
Sbjct: 653  GHEVCGRFYGNIQTVINTWLLLEGHSIGIGDTIADPQTYMEIQRAIRKAKEDVIEVIQKA 712

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS IN
Sbjct: 713  HNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNIN 772

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHA
Sbjct: 773  ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 832

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    
Sbjct: 833  MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGEM 892

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E QTL ++K+    F++ F+F+    + N  Y+ + + +D+  +K+L       +Q+LE
Sbjct: 893  VEFQTLPTIKLSNRIFERKFKFD----STNERYLRRIFTEDV--VKQLMGSSGDVIQELE 946

Query: 946  ADRYQLATE------IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
             +  QL  +      I  SGD+   LP NL+R+IWN QK F ++ R P+D+ P+ V+E V
Sbjct: 947  REWEQLVKDREALRSIFPSGDNKVVLPCNLQRMIWNVQKIFHINKRVPTDLSPLRVIEGV 1006

Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
              L  +  +V GED LS +A +NATL F  L+RST  +K V ++ RL+ EAFEW+IGEIE
Sbjct: 1007 RDLLNKCVIVAGEDRLSKQANENATLLFQCLVRSTLCTKCVSEDFRLSSEAFEWLIGEIE 1066

Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
            +RF Q+  APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK
Sbjct: 1067 TRFQQAQCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKK 1126

Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
             K PSL+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV
Sbjct: 1127 PKAPSLTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFV 1186

Query: 1180 KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
              YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDN
Sbjct: 1187 NVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDN 1244

Query: 1240 ADKLILRIRIMNDEAPKGELND-------ESAEDDVFLKKIESNMLTEMALRGV------ 1286
            A+KL+LRIRIMN +  K            +  EDD+FL+ IE+NML++M L+G+      
Sbjct: 1245 AEKLVLRIRIMNSDDGKFGGGGGDGDEEVDKMEDDMFLRCIEANMLSDMTLQGIEAISKV 1304

Query: 1287 ----------------------------------NLLAVMCHEDVDARRTTSNHLIEIIE 1312
                                              +++ V+   DVD  RT SN + EI  
Sbjct: 1305 YMHLPQTDSKKRMVITESGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFS 1364

Query: 1313 VLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPM 1372
            VLGIEAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +
Sbjct: 1365 VLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGAL 1424

Query: 1373 MRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQ 1432
            MRCSFEETVD+++DAA  AE D +RGV+ENI++GQLA +GTG   L L+ E  K  IEL 
Sbjct: 1425 MRCSFEETVDVIMDAASHAEVDPMRGVSENIIMGQLARMGTGCFDLLLDAEKCKAGIELP 1484

Query: 1433 LPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNL--RLSPVTDAQFSPYVGGMAF 1490
            +         G+ P      GT    G M  G   +P++  R++P + A  +P  GG A+
Sbjct: 1485 MAGAA-----GLVPG---AGGT----GGMFFGSAATPSMSPRMTPWS-AGVTPGYGGSAW 1531

Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSP-TSPGYSPTSPGYSPTSPGYSPTSPTYSP------S 1543
            SP S+ GY  S  G +P  P +SP T+   S  SP Y+  SP   P SP+ SP       
Sbjct: 1532 SPASAGGYLGS--GMTPGGPNFSPSTASDASGMSPAYA-WSP-QVPLSPSMSPYIPSGSH 1587

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1589
            SP YSP+SP++ PTSPS +PTSP YSP SPSYSPTSP+YSP SPSY
Sbjct: 1588 SPSYSPSSPSFVPTSPSLTPTSPGYSPASPSYSPTSPNYSPASPSY 1633



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 59/132 (44%), Positives = 76/132 (57%), Gaps = 23/132 (17%)

Query: 1583 SPTSPSYSP-TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS-YSP 1640
            S  +PS SP  +P  +  +P Y  +  A+SP S A        +P  P++SP++ S  S 
Sbjct: 1505 SAATPSMSPRMTPWSAGVTPGYGGS--AWSPAS-AGGYLGSGMTPGGPNFSPSTASDASG 1561

Query: 1641 TSPSYS-----PTSPSYSP-------------TSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
             SP+Y+     P SPS SP             +SPS+ PTSP+ +PTSPGYSP SPSYSP
Sbjct: 1562 MSPAYAWSPQVPLSPSMSPYIPSGSHSPSYSPSSPSFVPTSPSLTPTSPGYSPASPSYSP 1621

Query: 1683 TSPTYSPTSPSY 1694
            TSP YSP SPSY
Sbjct: 1622 TSPNYSPASPSY 1633



 Score = 55.1 bits (131), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 81/140 (57%), Gaps = 18/140 (12%)

Query: 1639 SPTSPSYSP-TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
            S  +PS SP  +P  +  +P Y  +  A+SP S G    S   +P  P +SP++ S    
Sbjct: 1505 SAATPSMSPRMTPWSAGVTPGYGGS--AWSPASAGGYLGS-GMTPGGPNFSPSTAS---D 1558

Query: 1698 SAKYSPSLAYSPS---SPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPY 1754
            ++  SP+ A+SP    SP +SP  P    SP+YSP+S S+ PTSPS +P+SP YSP+SP 
Sbjct: 1559 ASGMSPAYAWSPQVPLSPSMSPYIPSGSHSPSYSPSSPSFVPTSPSLTPTSPGYSPASP- 1617

Query: 1755 NAGGGNPDYSPSSPQYSPSA 1774
                    YSP+SP YSP++
Sbjct: 1618 -------SYSPTSPNYSPAS 1630



 Score = 47.0 bits (110), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 29/146 (19%)

Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSL---AYSPSSPRLSPASPYSPTSPNY 1727
            PG   T   +  ++ T S  SP   P SA  +P     A+SP+S      S  +P  PN+
Sbjct: 1493 PGAGGTGGMFFGSAATPS-MSPRMTPWSAGVTPGYGGSAWSPASAGGYLGSGMTPGGPNF 1551

Query: 1728 SP-TSSSYSPTSPSY--SPSSPTYSPSSPY---------------NAGGGNPDYSPSSPQ 1769
            SP T+S  S  SP+Y  SP  P     SPY               +    +P  +P+SP 
Sbjct: 1552 SPSTASDASGMSPAYAWSPQVPLSPSMSPYIPSGSHSPSYSPSSPSFVPTSPSLTPTSP- 1610

Query: 1770 YSPSAGYSPSAPGYSPSSTSQYTPQT 1795
                 GYSP++P YSP+S + Y+P +
Sbjct: 1611 -----GYSPASPSYSPTSPN-YSPAS 1630


>gi|324120538|dbj|BAJ78660.1| RNA polymerase II largest subunit [Euconocephalus varius]
          Length = 1640

 Score = 1725 bits (4468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 896/1646 (54%), Positives = 1145/1646 (69%), Gaps = 102/1646 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I   ET E G+PK GGL DPR G +DR  +
Sbjct: 6    SKAPLRTVKRVQFGILSPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGVMDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  N  ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+ +
Sbjct: 66   CQTCAGNQTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPTNPKIKEVV 125

Query: 126  KIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQDG-----EEPLKKNKGGCGAQQPKL 178
                  P+ RL  + D CK K  CEGGDE+D+  ++      ++P K   GGCG  QP +
Sbjct: 126  MKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKENADDPNNQQPRKVGHGGCGRYQPSI 185

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
               G+ + AE+K     N+D +      E+K  L+AERV  +LK I+DE+C +LG++PK+
Sbjct: 186  RRSGLDLTAEWK---HVNEDSQ------EKKIALSAERVWEILKHITDEECFILGMDPKF 236

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARPDWMI+ VLP+PP  VRP+          DDLTH+LA II+ N  L R E+ GA AH+
Sbjct: 237  ARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKANNELIRNEQAGAAAHV 296

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ISE  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFS
Sbjct: 297  ISENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 356

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVITPDP + IDQ+GVP SIA N+T+PE VTP+NI++++ELV  G    PG   AKYI
Sbjct: 357  ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPG---AKYI 413

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IRD+G+R+DLR+  KSSD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+
Sbjct: 414  IRDNGERIDLRFHPKSSDLHLQCGYKVERHVRDGDLVIFNRQPTLHKMSMMGHRVKVLPW 473

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQ
Sbjct: 474  STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQ 533

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL   RK+TKRD F+EK+  MNILM+   +DGK+PQP I+KP+PLWTGKQVF+LIIP  
Sbjct: 534  DTLTAVRKMTKRDVFLEKEQMMNILMFLPIWDGKMPQPAIMKPKPLWTGKQVFSLIIPGN 593

Query: 589  INLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
            +N+ RT + H D+ D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E
Sbjct: 594  VNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLE 653

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
            +G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++
Sbjct: 654  LGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQK 713

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS I
Sbjct: 714  AHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNI 773

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFH
Sbjct: 774  NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH 833

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+   
Sbjct: 834  AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGE 893

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
             +E Q L ++K+    F+K F+F+   E        ++ + ++    ++    + E ++L
Sbjct: 894  TVEFQNLPTIKLSNKAFEKKFKFDPTNERHLRRVFNEDILKEMMGSGDVISELEREWEQL 953

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
              DR  L  +I  SG+S   LP NL+R+IWN QK F ++ R P+D+ P+ V+  V  L +
Sbjct: 954  CKDREAL-RQIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIHGVSDLLK 1012

Query: 1005 RLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
            +  +V G+D LSV+A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q
Sbjct: 1013 KCVIVAGDDHLSVQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIEARFQQ 1072

Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS 1124
            +  +PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PS
Sbjct: 1073 AQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132

Query: 1125 LSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
            L+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYE
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYE 1192

Query: 1185 MPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            MPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+
Sbjct: 1193 MPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLV 1250

Query: 1245 LRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV--------------- 1286
            LRIRIMN +  K +  +E+    EDD+FL+ IE+NML++M L+G+               
Sbjct: 1251 LRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDS 1310

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     +++ V+   DVD  RT SN + EI  VLGIEAVR+
Sbjct: 1311 KKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRK 1370

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1371 SVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLE 1441
            D+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  IE+ +      + 
Sbjct: 1431 DVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDAEKCKAGIEIPMSVGGGMMG 1490

Query: 1442 FGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPS 1501
                   S  + TP     M+P    S     +P   + +SP       +     G +P 
Sbjct: 1491 GVGMFFGS--AATPSMSPQMTPWNQVS-----TPSYSSVWSP-------ANMLGSGMTPG 1536

Query: 1502 SPGYSPS-SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPS-----SPGYSPTSPAYS 1555
             P +SPS +   S  SPGYSP SP     S    P+   Y PS     SP YSP+SPAY 
Sbjct: 1537 GPSFSPSGASDASGMSPGYSPWSPQPGSPSS-PGPSQSPYIPSPMSGMSPSYSPSSPAYX 1595

Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPS 1581
            PTSPS +P+SP+YSPTSPSYSPTSP+
Sbjct: 1596 PTSPSMTPSSPNYSPTSPSYSPTSPN 1621



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 69/123 (56%), Gaps = 13/123 (10%)

Query: 1555 SPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPAYSP 1612
            S  +PS SP  +P    ++PSYS      +      +P  PS+SP+  S  S  SP YSP
Sbjct: 1498 SAATPSMSPQMTPWNQVSTPSYSSVWSPANMLGSGMTPGGPSFSPSGASDASGMSPGYSP 1557

Query: 1613 TSPAYSPTSPA------YSPTSPS-----YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
             SP     S        Y P+  S     YSP+SP+Y PTSPS +P+SP+YSPTSPSYSP
Sbjct: 1558 WSPQPGSPSSPGPSQSPYIPSPMSGMSPSYSPSSPAYXPTSPSMTPSSPNYSPTSPSYSP 1617

Query: 1662 TSP 1664
            TSP
Sbjct: 1618 TSP 1620



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 58/126 (46%), Positives = 73/126 (57%), Gaps = 17/126 (13%)

Query: 1541 SPSSPGYSP-TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSP 1598
            S ++P  SP  +P    ++PSYS      +      +P  PS+SP+  S  S  SP YSP
Sbjct: 1498 SAATPSMSPQMTPWNQVSTPSYSSVWSPANMLGSGMTPGGPSFSPSGASDASGMSPGYSP 1557

Query: 1599 TSPS-------------YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1645
             SP              Y P SP  S  SP+YSP+SPAY PTSPS +P+SP+YSPTSPSY
Sbjct: 1558 WSPQPGSPSSPGPSQSPYIP-SP-MSGMSPSYSPSSPAYXPTSPSMTPSSPNYSPTSPSY 1615

Query: 1646 SPTSPS 1651
            SPTSP+
Sbjct: 1616 SPTSPN 1621



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/126 (46%), Positives = 73/126 (57%), Gaps = 5/126 (3%)

Query: 1562 SPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA-YSPTSPAYSP 1619
            S  +PS SP  +P    ++PSYS      +      +P  PS+SP+  +  S  SP YSP
Sbjct: 1498 SAATPSMSPQMTPWNQVSTPSYSSVWSPANMLGSGMTPGGPSFSPSGASDASGMSPGYSP 1557

Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
             SP     S      S  Y P SP  S  SPSYSP+SP+Y PTSP+ +P+SP YSPTSPS
Sbjct: 1558 WSPQPGSPSSPGPSQS-PYIP-SP-MSGMSPSYSPSSPAYXPTSPSMTPSSPNYSPTSPS 1614

Query: 1680 YSPTSP 1685
            YSPTSP
Sbjct: 1615 YSPTSP 1620



 Score = 52.0 bits (123), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 60/123 (48%), Gaps = 15/123 (12%)

Query: 1639 SPTSPSYSP-TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT-YSPTSPSY-- 1694
            S  +PS SP  +P    ++PSYS      +    G +P  PS+SP+  +  S  SP Y  
Sbjct: 1498 SAATPSMSPQMTPWNQVSTPSYSSVWSPANMLGSGMTPGGPSFSPSGASDASGMSPGYSP 1557

Query: 1695 -----------NPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
                        P  + Y PS     S      +  Y PTSP+ +P+S +YSPTSPSYSP
Sbjct: 1558 WSPQPGSPSSPGPSQSPYIPSPMSGMSPSYSPSSPAYXPTSPSMTPSSPNYSPTSPSYSP 1617

Query: 1744 SSP 1746
            +SP
Sbjct: 1618 TSP 1620



 Score = 50.8 bits (120), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 59/127 (46%), Positives = 73/127 (57%), Gaps = 5/127 (3%)

Query: 1513 SPTSPGYSP-TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS-YSPTSPSYSP 1570
            S  +P  SP  +P    ++P YS      +    G +P  P++SP+  S  S  SP YSP
Sbjct: 1498 SAATPSMSPQMTPWNQVSTPSYSSVWSPANMLGSGMTPGGPSFSPSGASDASGMSPGYSP 1557

Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
             SP     S      S  Y P SP  S  SPSYSP+SPAY PTSP+ +P+SP YSPTSPS
Sbjct: 1558 WSPQPGSPSSPGPSQS-PYIP-SP-MSGMSPSYSPSSPAYXPTSPSMTPSSPNYSPTSPS 1614

Query: 1631 YSPTSPS 1637
            YSPTSP+
Sbjct: 1615 YSPTSPN 1621



 Score = 48.1 bits (113), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 48/126 (38%), Positives = 64/126 (50%), Gaps = 5/126 (3%)

Query: 1618 SPTSPAYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA-YSPTSPGYSP 1675
            S  +P+ SP  +P    ++PSYS      +      +P  PS+SP+  +  S  SPGYSP
Sbjct: 1498 SAATPSMSPQMTPWNQVSTPSYSSVWSPANMLGSGMTPGGPSFSPSGASDASGMSPGYSP 1557

Query: 1676 TSPSYSPTSPTYSPTSPSY-NPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSY 1734
             SP     S      SP   +P S         SP+    SP+   +P+SPNYSPTS SY
Sbjct: 1558 WSPQPGSPSSPGPSQSPYIPSPMSGMSPSYSPSSPAYXPTSPS--MTPSSPNYSPTSPSY 1615

Query: 1735 SPTSPS 1740
            SPTSP+
Sbjct: 1616 SPTSPN 1621


>gi|386683448|gb|AFJ19492.1| DNA-directed RNA polymerase II subunit [Peltigera malacea]
          Length = 1737

 Score = 1725 bits (4468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 920/1774 (51%), Positives = 1195/1774 (67%), Gaps = 166/1774 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDR 62
            F  S A +  ++ +QFG+LSP+EI+ MSV  IE+ ET +    +P+  GL+DPRLG+IDR
Sbjct: 6    FQPSSAPLRSIQEIQFGLLSPEEIKNMSVAPIEYPETMDEANQRPRHMGLADPRLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
             +KC TC  NM+ECPGHFGH+ELA P+FH+GFM     ++ +VC NC KIL DE +  FK
Sbjct: 66   AIKCGTCDENMSECPGHFGHIELAVPVFHVGFMTKKKKLLETVCHNCGKILLDESNADFK 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEG 182
             AL+ R+PK R   I  ACK K  C+     D    D  +  K + GGCG  QP++  EG
Sbjct: 126  NALRFRDPKRRFDAIWKACKPKMVCDMMPVADDGIPDKSQEPKHDHGGCGNIQPEIRKEG 185

Query: 183  MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
            +K+   +KA+++  D Q++       K+ +T +  L + + IS E+ Q +GLN  YARP+
Sbjct: 186  LKLTGTWKARKEDEDPQDE-------KRPITPQNALNIFRHISSEEIQRMGLNVDYARPE 238

Query: 243  WMILQVLPIPPPP------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            WMI+ VLP+PPPP            +R  DDLT++L  IIR N N+R  E  G+PAH+++
Sbjct: 239  WMIITVLPVPPPPVRPSIAVDGGNGMRGEDDLTYKLGDIIRANGNVRTCEAEGSPAHVVA 298

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            EF QLLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSAR
Sbjct: 299  EFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSAR 358

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVIT DP +++D++GVP SIA  LTYPETVTPYNI++L +LV+ GP+  PG   AKY+IR
Sbjct: 359  TVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKTGPNDHPG---AKYVIR 415

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D G+R+DLR+ K++ +  L+ G+KVERH+ DGD+++FNRQPSLHK S+MGHR+++MPYST
Sbjct: 416  DTGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQPSLHKESMMGHRVRVMPYST 475

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV +L MVP  IVSPQ N P+MGIVQDT
Sbjct: 476  FRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDT 535

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L G  KI +RD F+ K++ MNIL+W  D+DG +PQP ILKPRP WTGKQ+ +LIIP  +N
Sbjct: 536  LCGIYKICRRDVFLSKEMVMNILLWVPDWDGVIPQPAILKPRPKWTGKQIISLIIPPGLN 595

Query: 591  LFRTAAWHAD--NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            LFR+++      ND G+  +G        GEL+ G   KK++G ++  ++H+I+ E GPD
Sbjct: 596  LFRSSSEGPSPLNDDGLQVSG--------GELMYGLFNKKSVGATSNGVVHIIFNEKGPD 647

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
            AA  F    Q +VNYWLL N FSIGIGDTI D  T++ I   +++ K  V  + + A + 
Sbjct: 648  AAMSFFNGCQTVVNYWLLHNGFSIGIGDTIPDRVTIQAIEAAVNEQKAEVAEITRSATEN 707

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             LEP PG  + E+FE+KV + LN ARD+AG+  +KSL + NN   M  +GSKGS INISQ
Sbjct: 708  ELEPLPGMNVRETFESKVQKALNKARDDAGTVTEKSLKDINNATQMARSGSKGSTINISQ 767

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            MTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM G
Sbjct: 768  MTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAG 827

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D V IE 
Sbjct: 828  REGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEG 887

Query: 889  QTLDSLKMKKSEFDKAFRFE-MD---EENWNPNYMLQ--EYIDDLKTIKELRDVFDAEVQ 942
            Q +D +K   ++F++ FR + MD   E + +P+++ Q  E   DL    +++   D E  
Sbjct: 888  QRVDIIKCSDAQFERKFRVDLMDPRPETSISPDFLEQANEMTGDL----DIQGYLDEEYD 943

Query: 943  KLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
             L+A R  L  +     +  + LP N+ R++  A+ TFK+     S++HP EV+  V  L
Sbjct: 944  HLQAARDFLRKDKRDDSEQVY-LPTNIIRILDTAKTTFKIKDGARSNLHPAEVIPQVQDL 1002

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
             +RL +V G+D LS EAQ+NAT+ F   LRS  A KR++ E+ L + AF+ V+GEIESRF
Sbjct: 1003 LDRLVIVRGDDILSREAQQNATILFKAQLRSRLAFKRLVMENSLNKLAFQHVLGEIESRF 1062

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             ++ V PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVAK IKT
Sbjct: 1063 CKAAVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKNIKT 1122

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS++V+ +   +  KE AK ++ A+E+TTLRSVTE TE++YDPD   T++E D E V+SY
Sbjct: 1123 PSMTVYQEGDKSGNKESAKLLRSAVEHTTLRSVTETTEIYYDPDVYSTVVEADKEIVESY 1182

Query: 1183 YEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADK 1242
              +P+ED   +  S WLLRI L R  ++DK L++  VA KI  E+  DL  IF+D+NAD+
Sbjct: 1183 MILPEEDQRAQ--SRWLLRITLGRRSLLDKGLTVQDVASKIKSEYMKDLAVIFSDNNADE 1240

Query: 1243 LILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---------------- 1286
             ++RIR++ +    G+ +D+  E+DV LK++E+++L  + LRGV                
Sbjct: 1241 QVIRIRMIQE----GKDDDDDLEEDVMLKRLENHLLDTLTLRGVPGIERAFLNTKTKVRM 1296

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                      L  V+    VD  RT SN  IE+ EV GIEA R 
Sbjct: 1297 KEDGALVMDKKDPLCTEWFLDTSGSALGQVLAIPGVDTTRTYSNSFIEVFEVFGIEATRS 1356

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            AL+ EL  V++FDGSYVN+RHLA+L D MT RGH+MAITRHGINR DTG +MRCSFEETV
Sbjct: 1357 ALMRELTAVLAFDGSYVNHRHLALLVDVMTSRGHIMAITRHGINRADTGALMRCSFEETV 1416

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLE 1441
            +ILL+AA   E D  RGV+EN+MLGQLAP+GTG+  + L+  ML   I     + + G+ 
Sbjct: 1417 EILLEAAACGELDDCRGVSENVMLGQLAPLGTGELEILLDQNMLDTLIT---DNSVGGI- 1472

Query: 1442 FGMTPARSPVSGTPYHDG--MMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYS 1499
             GM    +  + TPY  G  M  PGY+ +P+        A FSP V     +P    GY 
Sbjct: 1473 -GMKGGLADGAATPYDSGSPMQDPGYIGTPDY------GASFSPIVNSGGATPPGFTGYH 1525

Query: 1500 P--SSPGYSPSSPG---YSPTSP-GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1553
            P     G SP SPG   YSP SP   SPTSPG+SPTSPGYSPTSP  S SSPG++ +SP 
Sbjct: 1526 PGFGQGGMSPYSPGGGAYSPRSPFNTSPTSPGFSPTSPGYSPTSPGMSVSSPGFA-SSPR 1584

Query: 1554 YSPTSPSYSPTSPSYSPTSPS--------------------------YSPTSPSYSPTSP 1587
            +SP SP+++PTSP YSPTSP+                          YSP+SP+YSPTSP
Sbjct: 1585 FSPASPAFTPTSPGYSPTSPAYGQSGISPTSPSYSPTSPSYSPTSPNYSPSSPNYSPTSP 1644

Query: 1588 SYSPTSPSYSPTSPSYSPTSPA--------------------YSPTSP--AYSPTSPAY- 1624
            SYSPTSP YSPTSP +  ++                      YSPTSP  +YSPTSP + 
Sbjct: 1645 SYSPTSPVYSPTSPQFGGSATTKQHSPTSPTSPTSYSPTSPMYSPTSPVGSYSPTSPNFS 1704

Query: 1625 -SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
             SPTSP  +P    YS +SP +SPTSP+YSPTSP
Sbjct: 1705 NSPTSPGSAP----YSASSPKWSPTSPTYSPTSP 1734



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/268 (42%), Positives = 145/268 (54%), Gaps = 49/268 (18%)

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSP 1591
            Y   SP   P   G      ++SP   S   T P ++   P +     S YSP   +YSP
Sbjct: 1486 YDSGSPMQDPGYIGTPDYGASFSPIVNSGGATPPGFTGYHPGFGQGGMSPYSPGGGAYSP 1545

Query: 1592 TSP-SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
             SP + SPTSP +SPTSP YSPTSP  S +SP ++ +SP +SP SP+++PTSP YSPTSP
Sbjct: 1546 RSPFNTSPTSPGFSPTSPGYSPTSPGMSVSSPGFA-SSPRFSPASPAFTPTSPGYSPTSP 1604

Query: 1651 SY--------------------------SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
            +Y                          SP+SP+YSPTSP+YSPTSP YSPTSP +  ++
Sbjct: 1605 AYGQSGISPTSPSYSPTSPSYSPTSPNYSPSSPNYSPTSPSYSPTSPVYSPTSPQFGGSA 1664

Query: 1685 PTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPS---Y 1741
             T   +  S    ++    S  YSP+SP       YSPTSPN+S      SPTSP    Y
Sbjct: 1665 TTKQHSPTSPTSPTSYSPTSPMYSPTSP----VGSYSPTSPNFS-----NSPTSPGSAPY 1715

Query: 1742 SPSSPTYSPSSPYNAGGGNPDYSPSSPQ 1769
            S SSP +SP+S        P YSP+SP+
Sbjct: 1716 SASSPKWSPTS--------PTYSPTSPR 1735



 Score =  137 bits (345), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/262 (41%), Positives = 138/262 (52%), Gaps = 37/262 (14%)

Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA-YSPTSPAYSP 1619
            Y   SP   P          S+SP   S   T P ++   P +     + YSP   AYSP
Sbjct: 1486 YDSGSPMQDPGYIGTPDYGASFSPIVNSGGATPPGFTGYHPGFGQGGMSPYSPGGGAYSP 1545

Query: 1620 TSP-AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1678
             SP   SPTSP +SPTSP YSPTSP  S +SP ++ +SP +SP SPA++PTSPGYSPTSP
Sbjct: 1546 RSPFNTSPTSPGFSPTSPGYSPTSPGMSVSSPGFA-SSPRFSPASPAFTPTSPGYSPTSP 1604

Query: 1679 SYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPT 1737
            +Y   S     +        +    S  YSPSSP  SP SP YSPTSP YSPTS  +  +
Sbjct: 1605 AYG-QSGISPTSPSYSPTSPSYSPTSPNYSPSSPNYSPTSPSYSPTSPVYSPTSPQFGGS 1663

Query: 1738 S--------------------PSYSPSSP--TYSPSSPYNAGGGNPDYSPSSPQYSPSAG 1775
            +                    P YSP+SP  +YSP+SP      N   SP+SP  +P   
Sbjct: 1664 ATTKQHSPTSPTSPTSYSPTSPMYSPTSPVGSYSPTSP------NFSNSPTSPGSAP--- 1714

Query: 1776 YSPSAPGYSPSSTSQYTPQTNR 1797
            YS S+P +SP+S + Y+P + R
Sbjct: 1715 YSASSPKWSPTSPT-YSPTSPR 1735


>gi|324120590|dbj|BAJ78686.1| RNA polymerase II largest subunit [Panorpa takenouchii]
          Length = 1725

 Score = 1725 bits (4468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 887/1628 (54%), Positives = 1138/1628 (69%), Gaps = 124/1628 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGIL+PDEIR+MSV +  +   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRTVKKVQFGILAPDEIRRMSVTEGGVRFSETMEGGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   L I+R VCFNCSK+L    + K K+ +
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHIGFVTKTLKILRCVCFNCSKLLVSPQNPKIKEVV 125

Query: 126  --KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDG--EEPLKK-NKGGCGAQQPKLTI 180
                  P+ RL  + D CK K  CEGG+++D+  +DG   +P KK   GGCG  QP++  
Sbjct: 126  VKSKGQPRKRLAYVYDLCKGKKICEGGEDMDMT-KDGIPTDPSKKTGHGGCGHYQPQIKR 184

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ + AE+K     N+D +      E+K  ++AERV  +LK I+DE+C +LG++PK+AR
Sbjct: 185  TGLDITAEWK---HVNEDTQ------EKKIVVSAERVWEILKHITDEECFVLGMDPKFAR 235

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMI+ V+P+PP  VRP+          DDLTH+L+ II+ N  L+R E  GA AH+I+
Sbjct: 236  PDWMIITVMPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELKRNEAAGAAAHVIT 295

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT+ DN++PG PRA Q+SG+P+K++ SRLK KEGRIRGNLMGKRVDFSAR
Sbjct: 296  ENIKMLQFHVATFVDNDMPGMPRAMQKSGKPLKAVKSRLKGKEGRIRGNLMGKRVDFSAR 355

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA NLT+PE VTP+N+ER++ELV  G    PG   AKYI+R
Sbjct: 356  TVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNLERMQELVRRGNSQYPG---AKYIVR 412

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  K SD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 413  DNGERIDLRFHPKPSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWST 472

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 473  FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDT 532

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD FIEK+  MNILM+   ++GK+PQP ILKP+PLWTGKQ+F+LIIP  +N
Sbjct: 533  LTAVRKMTKRDVFIEKEQMMNILMFLPTWNGKMPQPCILKPKPLWTGKQIFSLIIPGNVN 592

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D  D G    ++ GDT V +E GEL+ G LCK TLGTS GSL+H+ + E+G
Sbjct: 593  MIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIKGILCKNTLGTSAGSLLHICFLELG 652

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             + A +F G+ Q +VN+WLL    SIGIGDTIAD +T   I ++I KAK +V  +I++A 
Sbjct: 653  HEVAGRFYGNIQTVVNHWLLLEGHSIGIGDTIADPQTYMEIQNSIKKAKEDVIEVIQKAH 712

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 713  NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 772

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 773  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 832

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 833  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETV 892

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E Q L ++K+    F+K F+F+   E        ++ I +L     +    ++E ++L  
Sbjct: 893  EFQHLRTIKLSNKVFEKKFKFDATNERHLRRIFNEDIIKELTESGYVISELESEWEQLNK 952

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L + I ++G+S   LP NL+R+IWN QK F ++ R P+D+ P++V++ V  L ++ 
Sbjct: 953  DREALRS-IFSNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIKVIQGVKDLLQKC 1011

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +V G D LSV+A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+ 
Sbjct: 1012 VIVAGNDRLSVQANENATLLFQCLVRSTLCTKFVSEEFRLSSEAFEWLIGEIETRFQQAQ 1071

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
               GEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+
Sbjct: 1072 CNAGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 1131

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMP
Sbjct: 1132 VFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNIYYEMP 1191

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D  P KISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LR
Sbjct: 1192 DFD--PTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLR 1249

Query: 1247 IRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGVNLLA------------- 1290
            IRIMN +  K +  +E+    EDD+FL+ IE+NML++M L+G+  +A             
Sbjct: 1250 IRIMNSDENKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDSKK 1309

Query: 1291 ---------------------------VMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
                                       V+   DVD  RT SN + EI  VLGIEAVR+++
Sbjct: 1310 RIIITETGEFKAIAEWLLETDGTSMMKVLSERDVDPIRTFSNDICEIFAVLGIEAVRKSV 1369

Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
              E+  V++F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+
Sbjct: 1370 EKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1429

Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQ--LPSYMEGL- 1440
            L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  +  I++   L + M G  
Sbjct: 1430 LMDAACHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCREGIDIANTLGASMIGEI 1489

Query: 1441 -EFGM-TPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYV---GGMAFSPTSS 1495
              FGM TP+ SP   TP++ G  +P Y+ S             SPY    GG +FSP+ +
Sbjct: 1490 PYFGMATPSTSP-RMTPWNQG-ATPAYIAS---------SYSHSPYGMTPGGASFSPSGA 1538

Query: 1496 PGYSPSSPGYS-------------------------PSSPGYSPTSPGYSPTSPGYSPTS 1530
               S  SPG+                          PSSP Y+P SP  +P SP YSPTS
Sbjct: 1539 SDASGLSPGWQPGSPSSPGPSMSPYYSSPSASPSYSPSSPSYAPPSPSVTPASPNYSPTS 1598

Query: 1531 PGYSPTSP 1538
            P YSPTSP
Sbjct: 1599 PNYSPTSP 1606



 Score = 42.0 bits (97), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 36/120 (30%)

Query: 1552 PAYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPA 1609
            P +   +PS SP  +P     +P+Y  +S S+SP     +P   S+SP+  S  S  SP 
Sbjct: 1490 PYFGMATPSTSPRMTPWNQGATPAYIASSYSHSPY--GMTPGGASFSPSGASDASGLSPG 1547

Query: 1610 YS--------------------------------PTSPAYSPTSPAYSPTSPSYSPTSPS 1637
            +                                 P SP+ +P SP YSPTSP+YSPTSP+
Sbjct: 1548 WQPGSPSSPGPSMSPYYSSPSASPSYSPSSPSYAPPSPSVTPASPNYSPTSPNYSPTSPN 1607



 Score = 42.0 bits (97), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 36/119 (30%)

Query: 1587 PSYSPTSPSYSP-TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS-YSPTSPS 1644
            P +   +PS SP  +P     +PAY  +S ++SP     +P   S+SP+  S  S  SP 
Sbjct: 1490 PYFGMATPSTSPRMTPWNQGATPAYIASSYSHSPY--GMTPGGASFSPSGASDASGLSPG 1547

Query: 1645 YS--------------------------------PTSPSYSPTSPSYSPTSPAYSPTSP 1671
            +                                 P SPS +P SP+YSPTSP YSPTSP
Sbjct: 1548 WQPGSPSSPGPSMSPYYSSPSASPSYSPSSPSYAPPSPSVTPASPNYSPTSPNYSPTSP 1606



 Score = 41.2 bits (95), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 36/119 (30%)

Query: 1531 PGYSPTSPTYSPS-SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPS 1588
            P +   +P+ SP  +P     +PAY  +S S+SP     +P   S+SP+  S  S  SP 
Sbjct: 1490 PYFGMATPSTSPRMTPWNQGATPAYIASSYSHSPY--GMTPGGASFSPSGASDASGLSPG 1547

Query: 1589 YS--------------------------------PTSPSYSPTSPSYSPTSPAYSPTSP 1615
            +                                 P SPS +P SP+YSPTSP YSPTSP
Sbjct: 1548 WQPGSPSSPGPSMSPYYSSPSASPSYSPSSPSYAPPSPSVTPASPNYSPTSPNYSPTSP 1606


>gi|340368153|ref|XP_003382617.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Amphimedon queenslandica]
          Length = 1933

 Score = 1725 bits (4467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 900/1620 (55%), Positives = 1131/1620 (69%), Gaps = 109/1620 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVV---QIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
            S A + +V+ VQFGILS +EI++ SV     I +  T E GKPK GGL DPR G IDR  
Sbjct: 7    SSAPLKRVKKVQFGILSAEEIKRRSVTVPDGIRYPYTMEGGKPKMGGLMDPRQGVIDRAS 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            +C+TC  NM  CPGHFGH+ L KP+FH+ FM  ++ IMR VCF CS++L D DD K K  
Sbjct: 67   RCQTCAGNMNTCPGHFGHISLTKPVFHVCFMTKIVKIMRCVCFYCSRLLIDSDDPKVKDI 126

Query: 125  L-KIRN-PKNRLKKILDACKNKTKCEGGD--EIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            L K R  P  RL+ I    + K  C+GG     D      ++P    +GGCG  QPKL  
Sbjct: 127  LLKTRTVPHKRLQYIYTLARVKRICDGGGGGAEDKNTTMMDDPKMMARGGCGRYQPKLRK 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+++ AE+K         E   E  ERK  ++AERVL + K +SD+DC+++G++P Y+R
Sbjct: 187  IGLEITAEWK---------EINEESQERKIVVSAERVLEIFKNMSDDDCRIIGIDPNYSR 237

Query: 241  PDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PD MI+ VLP+PP             R  DDLTH+L+ I++ NE L + E+NGA +HII 
Sbjct: 238  PDSMIITVLPVPPLPVRPAVVMHGSARNQDDLTHKLSDIVKANEQLIKNEQNGAASHIIE 297

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DNELPG P+A QR GRP+KSI  RLK+KEGRIRGNLMGKRVDFSAR
Sbjct: 298  EDLKMLQFHVATLKDNELPGMPKAVQRGGRPLKSIKQRLKSKEGRIRGNLMGKRVDFSAR 357

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
             VITPDP ++IDQ+GVP +IA NLT+PE VTP+NI+R++ELV  G +  PG   AKYIIR
Sbjct: 358  AVITPDPNLSIDQVGVPRTIAQNLTFPEVVTPFNIDRMQELVARGHNQYPG---AKYIIR 414

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            ++G+R+DLRY  K SD HL+ GYK+ERH+ D D ++FNRQP+LHKMS+MGHR+KI+P+ST
Sbjct: 415  ENGERIDLRYHPKPSDLHLQYGYKIERHIVDDDLIVFNRQPTLHKMSMMGHRVKILPWST 474

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVT+PYNADFDGDEMN+HVPQS ET+AE+ ELMMV + I++PQSNRPVMGIVQD+
Sbjct: 475  FRLNLSVTTPYNADFDGDEMNLHVPQSLETKAEIQELMMVHRNILTPQSNRPVMGIVQDS 534

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP-KQI 589
            L    K TKRD F+EK+  MN+LMW   +DGK+P P ILKP+PLWTGKQ+F+LIIP   +
Sbjct: 535  LTAATKFTKRDVFLEKESMMNLLMWLPSWDGKMPVPAILKPKPLWTGKQLFSLIIPGTNV 594

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            N+ RT + H D+ D G    ++ GDT V +E G+LLSG L K TLG   GSL+HV+  E+
Sbjct: 595  NVIRTHSTHPDDEDNGPYKWISPGDTKVLVEHGQLLSGILSKDTLGNKGGSLMHVVAMEL 654

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GPD AR F G+ Q +VN +L+    SIGIGDTIAD  T   I  TI  AKN+V  +IK+A
Sbjct: 655  GPDIARNFYGNIQTVVNNFLMLEGHSIGIGDTIADNLTYNDIQKTIRSAKNDVVEVIKKA 714

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ GSSAQ+SLSE NN K MVTAGSKGS IN
Sbjct: 715  HNNELEPTPGNTLRQTFENQVNRILNEARDKTGSSAQRSLSEFNNFKIMVTAGSKGSKIN 774

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHA
Sbjct: 775  ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPNEFFFHA 834

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKTSETGYIQRRL+KAME +M  YDGT+RNS   +IQ  YGEDGMD +W
Sbjct: 835  MGGREGLIDTAVKTSETGYIQRRLMKAMEGLMAHYDGTIRNSNSQMIQLCYGEDGMDGMW 894

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E Q L ++K   + F + F F++  +     +   E I DL     L+   + E Q+L+
Sbjct: 895  MEFQQLPTIKPSDAAFKRKFYFDVTNQRQLRQFFRDELIRDLMKSGTLQKELEDEFQQLK 954

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L + I  +G+S   LPVN+ RLIWNAQK F +D R   D+HP +V+E V +L ++
Sbjct: 955  EDRAALRS-IFPTGNSKVALPVNITRLIWNAQKIFHIDTRSKVDLHPSKVIEGVKELNDK 1013

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
            L VV G+D LS +AQ NATL F+I LRST  +KR+ +EH+LT EAFEW++GEIE+RF ++
Sbjct: 1014 LVVVKGDDALSRQAQINATLLFSIFLRSTLCTKRMAEEHKLTEEAFEWLLGEIETRFQRA 1073

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
             V PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+KK KTPSL
Sbjct: 1074 HVQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSL 1133

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            ++FL        E+ K+V C +E+TTL  VT  T ++YDPDP  T+I ED EFV  YYEM
Sbjct: 1134 TIFLLGQAARDAEKCKDVLCRIEHTTLSKVTANTSIFYDPDPQNTVIAEDQEFVNVYYEM 1193

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PD D  P  ISPWLLR+EL+R+ M DKKL+M  +AEKI+  F DDL C+FNDDNA+KL+L
Sbjct: 1194 PDFD--PALISPWLLRLELDRKRMTDKKLTMEQIAEKISSTFGDDLRCLFNDDNAEKLVL 1251

Query: 1246 RIRIMN--DEAPKGELNDES---AEDDVFLKKIESNMLTEMALR---------------- 1284
            RIR+MN  D+  + E ++E     ED+ FL+ +E+N+L++M L+                
Sbjct: 1252 RIRLMNSDDQKYQSEADEEQLDKMEDETFLRCLEANLLSDMTLQGIEQISKVYMHYPTQD 1311

Query: 1285 ------------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                    GVNLL V+    VD  RTTSNH++EI +VLGIEAVR
Sbjct: 1312 SKKRIVISEQGEFKAIQEWILETDGVNLLRVLSEPSVDPVRTTSNHIVEIFQVLGIEAVR 1371

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
            +AL  E+  VISFDGSYVNYRHLA+LCD MT RGHLMA+TRHG+NR + G +MRCSFEET
Sbjct: 1372 KALEKEINHVISFDGSYVNYRHLALLCDIMTCRGHLMAVTRHGVNRQEVGALMRCSFEET 1431

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIE-------LQL 1433
            VDIL++AA  AE D ++GV+E IMLGQL   GTG   L L+ E  K+A+E       + +
Sbjct: 1432 VDILMEAAGHAEVDKMQGVSECIMLGQLPKGGTGAFELMLDAEKCKSAMEISGTMTGMMI 1491

Query: 1434 PSYMEGLEFGMTPARSPV-SGTPYHDGMMSPGYL--FSPNLRLSPVTDAQFSPY----VG 1486
            P  M   E G  P  S   + TP+  G  +P Y+  ++P   ++P   A FSP     VG
Sbjct: 1492 PGLM--FERGSGPVGSQTPAMTPWQGG-ATPSYMDAWTPG-GMTPGMSAAFSPAAQSEVG 1547

Query: 1487 GMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG 1546
            G  FSP  SPG+SP      PSSP Y+P + GYSP SPGYSP SPG  P SP YSP+SPG
Sbjct: 1548 G--FSPGYSPGWSP-----GPSSPSYNPPA-GYSPASPGYSPASPG-GPASPKYSPASPG 1598



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 58/79 (73%), Gaps = 2/79 (2%)

Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL-SPASP-YSPT 1723
            Y+P+SP Y+P+SP Y+P+SP Y+P+SP Y+P S +YSPS      S    +P+SP Y+P+
Sbjct: 1844 YTPSSPQYTPSSPQYTPSSPQYTPSSPQYSPSSPQYSPSSPQYSPSSPQYTPSSPQYTPS 1903

Query: 1724 SPNYSPTSSSYSPTSPSYS 1742
            SP Y+P+S  Y+P+SP Y+
Sbjct: 1904 SPQYTPSSPQYTPSSPQYT 1922



 Score = 50.8 bits (120), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 59/113 (52%), Gaps = 41/113 (36%)

Query: 1596 YSPTS--------------------PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYS--- 1632
            YS                       P YSPTSP Y+P+SP Y+P+SP Y+P+SP Y+   
Sbjct: 1810 YSSNQKYSPSSPKYSPSSPKYSPSSPKYSPTSPPYTPSSPQYTPSSPQYTPSSPQYTPSS 1869

Query: 1633 ------------------PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
                              P+SP Y+P+SP Y+P+SP Y+P+SP Y+P+SP Y+
Sbjct: 1870 PQYSPSSPQYSPSSPQYSPSSPQYTPSSPQYTPSSPQYTPSSPQYTPSSPQYT 1922



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 36/83 (43%)

Query: 1720 YSPTSPNYSPTSSSYSPTSPSYS----------------------------PSSPTYSPS 1751
            Y+P+SP Y+P+S  Y+P+SP Y+                            PSSP Y+PS
Sbjct: 1844 YTPSSPQYTPSSPQYTPSSPQYTPSSPQYSPSSPQYSPSSPQYSPSSPQYTPSSPQYTPS 1903

Query: 1752 SPYNAGGGNPDYSPSSPQYSPSA 1774
            S        P Y+PSSPQY+PS+
Sbjct: 1904 S--------PQYTPSSPQYTPSS 1918


>gi|372292153|gb|AEX91899.1| RNA polymerase II largest subunit [Peltigera membranacea]
          Length = 1737

 Score = 1724 bits (4464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 922/1772 (52%), Positives = 1193/1772 (67%), Gaps = 162/1772 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDR 62
            F  S A +  ++ +QFG+LSP+EI+ MSV  IE+ ET +    +P+  GL+DPRLG+IDR
Sbjct: 6    FQPSSAPLRSIQEIQFGLLSPEEIKNMSVAPIEYPETMDEANQRPRHMGLADPRLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
             +KC TC  NM+ECPGHFGH+ELA P+FH+GFM  +  ++ +VC NC KIL DE +  FK
Sbjct: 66   AIKCGTCDENMSECPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKILLDESNADFK 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEG 182
             AL+ R+PK R   +  ACK K  C+     D    D  +  K + GGCG +QP++  EG
Sbjct: 126  NALRFRDPKRRFDAMWKACKPKMVCDMLVLADDDAPDKSQEPKHDHGGCGNRQPEIRKEG 185

Query: 183  MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
            +K+   +KA  +K+D++ Q     + K+ +T +  L + + IS ED Q +GLN  YARP+
Sbjct: 186  LKLTGTWKA--RKDDEESQ-----DEKRPITPQNALNIFRHISSEDIQKMGLNVDYARPE 238

Query: 243  WMILQVLPIPPPP------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            WMI+ VLP+PPPP            +R  DDLT++L  IIR N N+R  E  G+PAH+++
Sbjct: 239  WMIITVLPVPPPPVRPSIAVDGGNGMRGEDDLTYKLGDIIRANGNVRTCEAEGSPAHVVA 298

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            EF QLLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSAR
Sbjct: 299  EFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSAR 358

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVIT DP +++D++GVP SIA  LTYPETVTPYNI++L +LV+ GP+  PG   AKY+IR
Sbjct: 359  TVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKTGPNDHPG---AKYVIR 415

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D G+R+DLR+ K++ +  L+ G+KVERH+ DGD+++FNRQPSLHK S+MGHR+++MPYST
Sbjct: 416  DTGERIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQPSLHKESMMGHRVRVMPYST 475

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV +L MVP  IVSPQ N P+MGIVQDT
Sbjct: 476  FRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDT 535

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L G  KI +RD F+ K++ MNIL+W  D+DG +PQP ILKPRP WTGKQ+ +LIIP  +N
Sbjct: 536  LCGIYKICRRDVFLTKELVMNILLWVPDWDGVIPQPAILKPRPKWTGKQIISLIIPPGLN 595

Query: 591  LFRTAAWHAD--NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            LFR+++      ND G+  +G        GEL+ G   KK++G ++  ++H+I+ E GPD
Sbjct: 596  LFRSSSEGPSPLNDDGLQVSG--------GELMYGLFNKKSVGATSNGVVHIIFNEKGPD 647

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
            AA  F    Q +VNYWLL N FSIGIGDTI D  T++ I   +++ K  V  + + A + 
Sbjct: 648  AAMSFFNGCQTVVNYWLLHNGFSIGIGDTIPDRVTIQAIEAAVNEQKAEVAEITRSATEN 707

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             LEP PG  + E+FE+KV + LN ARD+AG+  +KSL ++NN   M  +GSKGS INISQ
Sbjct: 708  ELEPLPGMNVRETFESKVQKALNKARDDAGTVTEKSLKDTNNATQMARSGSKGSTINISQ 767

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            MTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM G
Sbjct: 768  MTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAG 827

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D V IE 
Sbjct: 828  REGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEG 887

Query: 889  QTLDSLKMKKSEFDKAFRFE-MD---EENWNPNYMLQ--EYIDDLKTIKELRDVFDAEVQ 942
            Q +D +    + F++ FR + MD   E + +P+++ Q  E   DL    E++   D E  
Sbjct: 888  QLVDIITCSDARFERKFRVDLMDPRPETSISPDFLDQANEMAGDL----EIQGYLDDEYD 943

Query: 943  KLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
             L+A R  L  +     +  + LP N+ R++  A+ TFK+     S++HP EV+  V  L
Sbjct: 944  HLQAARDFLRKDKRDDLEQVY-LPTNIIRILDTAKTTFKIKDGARSNLHPAEVIPQVQDL 1002

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
             +RL +V G+D LS EAQ+NAT+ F   +RS  A KR++ E+ L + AF+ V+GEIESRF
Sbjct: 1003 LDRLVIVRGDDSLSREAQQNATILFKAQIRSRLAFKRLVIENSLNKLAFQHVLGEIESRF 1062

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             ++ V PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVAK IKT
Sbjct: 1063 CKAAVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKNIKT 1122

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS++V+ +   +  KE AK ++ A+E+TTLRSVTE TE++YDPD   T++E D E V+SY
Sbjct: 1123 PSMTVYQEGNKSGNKESAKLLRSAVEHTTLRSVTETTEIYYDPDVYSTVVEADREIVESY 1182

Query: 1183 YEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADK 1242
              +P+ED   +  S WLLRI L R  ++DK L++  VA KI  E+  DL  IF+D+NAD+
Sbjct: 1183 MILPEEDTRAQ--SRWLLRITLGRRSLLDKGLTVQDVASKIKSEYMKDLAVIFSDNNADE 1240

Query: 1243 LILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---------------- 1286
             ++RIR++ +    G+  D+  E+DV LK++E+++L  + LRGV                
Sbjct: 1241 QVIRIRMIQE----GKDEDDDLEEDVMLKRLENHLLDTLTLRGVPGIERAFLNTKTKLRM 1296

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                      L  V+    VD  RT SN  IE+ EV GIEA R 
Sbjct: 1297 KEDGALVMDKKDPLCTEWFLDTSGSALGQVLAIPGVDTTRTYSNSFIEVFEVFGIEATRS 1356

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            AL+ EL  V++FDGSYVN+RHLA+L D MT RGH+MAITRHGINR DTG +MRCSFEETV
Sbjct: 1357 ALMRELTAVLAFDGSYVNHRHLALLVDVMTSRGHIMAITRHGINRADTGALMRCSFEETV 1416

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLE 1441
            +ILL+AA   E D  RGV+EN+MLGQLAP+GTG+  + L+  ML   I       M    
Sbjct: 1417 EILLEAAACGELDDCRGVSENVMLGQLAPLGTGELEILLDQNMLDTLITDNSVGGM---- 1472

Query: 1442 FGMTPARSPVSGTPYHDG--MMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYS 1499
             GM    +  + TPY  G  M   GY+ +P+        A FSP V     +P    GY 
Sbjct: 1473 -GMKGGLADGAATPYDSGSPMQDHGYIGTPDY------GASFSPIVNSGGATPPGFTGYH 1525

Query: 1500 P--SSPGYSPSSPG---YSPTSP-GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1553
            P     G SP SPG   YSPTSP   SPTSPG+SPTSPGYSPTSP  S SSPG++ +SP 
Sbjct: 1526 PGFGQGGMSPYSPGGGAYSPTSPFNPSPTSPGFSPTSPGYSPTSPGMSVSSPGFA-SSPR 1584

Query: 1554 YSPTSPSYSPTSPSYSPTSPS--------------------------YSPTSPSYSPTSP 1587
            +SP SP+++PTSP YSPTSP+                          YSP+SP+YSPTSP
Sbjct: 1585 FSPASPAFTPTSPGYSPTSPAYGQSGISPTSPSYSPTSPSYSPTSPNYSPSSPNYSPTSP 1644

Query: 1588 SYSPTSPSYSPTSPSYSPT--------------------SPAYSPTSP--AYSPTSPAYS 1625
            SYSPTSP YSPTSP +                       SP YSPTSP  +YSPTSP +S
Sbjct: 1645 SYSPTSPVYSPTSPQFGSNVTTKQHSPTSPTSPTSYSPTSPMYSPTSPVGSYSPTSPNFS 1704

Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
              SP+ SP S  YS +SP +SPTSP+YSPTSP
Sbjct: 1705 -NSPT-SPVSAPYSASSPKWSPTSPTYSPTSP 1734



 Score =  154 bits (388), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 103/243 (42%), Positives = 129/243 (53%), Gaps = 70/243 (28%)

Query: 1567 SYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPAY-SPTSPAYSPTSPAY 1624
            S+SP   S   T P ++   P +     S YSP   +YSPTSP   SPTSP +SPTSP Y
Sbjct: 1506 SFSPIVNSGGATPPGFTGYHPGFGQGGMSPYSPGGGAYSPTSPFNPSPTSPGFSPTSPGY 1565

Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS-------------- 1670
            SPTSP  S +SP ++ +SP +SP SP+++PTSP YSPTSPAY  +               
Sbjct: 1566 SPTSPGMSVSSPGFA-SSPRFSPASPAFTPTSPGYSPTSPAYGQSGISPTSPSYSPTSPS 1624

Query: 1671 -----PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL----------- 1714
                 P YSP+SP+YSPTSP+YSPTSP              YSP+SP+            
Sbjct: 1625 YSPTSPNYSPSSPNYSPTSPSYSPTSP-------------VYSPTSPQFGSNVTTKQHSP 1671

Query: 1715 -------------------SPASPYSPTSPNY-----SPTSSSYSPTSPSYSPSSPTYSP 1750
                               SP   YSPTSPN+     SP S+ YS +SP +SP+SPTYSP
Sbjct: 1672 TSPTSPTSYSPTSPMYSPTSPVGSYSPTSPNFSNSPTSPVSAPYSASSPKWSPTSPTYSP 1731

Query: 1751 SSP 1753
            +SP
Sbjct: 1732 TSP 1734



 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/248 (43%), Positives = 137/248 (55%), Gaps = 42/248 (16%)

Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPAYSPTSPAYSPTSPAYSPTSPSYS 1632
            S+SP   S   T P ++   P +     S YSP   AYSPTSP ++P     SPTSP +S
Sbjct: 1506 SFSPIVNSGGATPPGFTGYHPGFGQGGMSPYSPGGGAYSPTSP-FNP-----SPTSPGFS 1559

Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
            PTSP YSPTSP  S +SP ++ +SP +SP SPA++PTSPGYSPTSP+Y   S     +  
Sbjct: 1560 PTSPGYSPTSPGMSVSSPGFA-SSPRFSPASPAFTPTSPGYSPTSPAYG-QSGISPTSPS 1617

Query: 1693 SYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPT-------------- 1737
                  +    S  YSPSSP  SP SP YSPTSP YSPTS  +                 
Sbjct: 1618 YSPTSPSYSPTSPNYSPSSPNYSPTSPSYSPTSPVYSPTSPQFGSNVTTKQHSPTSPTSP 1677

Query: 1738 ------SPSYSPSSP--TYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTS 1789
                  SP YSP+SP  +YSP+SP      N   SP+SP  +P   YS S+P +SP+S +
Sbjct: 1678 TSYSPTSPMYSPTSPVGSYSPTSP------NFSNSPTSPVSAP---YSASSPKWSPTSPT 1728

Query: 1790 QYTPQTNR 1797
             Y+P + R
Sbjct: 1729 -YSPTSPR 1735



 Score = 41.2 bits (95), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 16/87 (18%)

Query: 1717 ASPYSPTSP----NYSPT---SSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQ 1769
            A+PY   SP     Y  T    +S+SP   S   + P ++   P    GG   YSP    
Sbjct: 1483 ATPYDSGSPMQDHGYIGTPDYGASFSPIVNSGGATPPGFTGYHPGFGQGGMSPYSPGGGA 1542

Query: 1770 YSPSA---------GYSPSAPGYSPSS 1787
            YSP++         G+SP++PGYSP+S
Sbjct: 1543 YSPTSPFNPSPTSPGFSPTSPGYSPTS 1569


>gi|91085731|ref|XP_973470.1| PREDICTED: similar to GA13798-PA [Tribolium castaneum]
          Length = 2007

 Score = 1724 bits (4464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 891/1638 (54%), Positives = 1130/1638 (68%), Gaps = 132/1638 (8%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRTVKRVQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKMGGLMDPRQGVIDRHSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP+FH+GF+   +  +R VCF CSK+L   ++ K K+ +
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKTLRCVCFYCSKLLVSPNNPKIKEVV 125

Query: 126  KIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP--------LKKNKGGCGAQQ 175
                  P+ RL  + D CK K  CEGGDE+DV G++GE+P         K+  GGCG  Q
Sbjct: 126  MKSKGQPRKRLAFVYDLCKGKNICEGGDEMDV-GKEGEDPNQEFGFLAKKQGHGGCGRYQ 184

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P +   G+ + AE+K     N+D +      ERK  L+AERV  +LK I+DE+C +LG++
Sbjct: 185  PNIRRTGLDLTAEWK---HLNEDSQ------ERKIALSAERVWEILKHITDEECFILGMD 235

Query: 236  PKYARPDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            PK+ARPDWMI+ VLP+PP             R  DDLTH+LA II+ N  L++ E  GA 
Sbjct: 236  PKFARPDWMIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKLADIIKANNELQKNEAAGAA 295

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
            AH+ISE  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I SRLK KEGRIRGNLMGKRV
Sbjct: 296  AHVISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKRV 355

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVITPDP + IDQ+GVP SIA NLT+PE VTP+N +++ ELV+ G    PG   A
Sbjct: 356  DFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFDKMSELVQRGNSQYPG---A 412

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KYIIRD+G+R+DLR+  KSSD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K+
Sbjct: 413  KYIIRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKV 472

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            +P+STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  L + P+ I++PQ+N+PVMG
Sbjct: 473  LPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHITPRQIITPQANKPVMG 532

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDTL   RK+TKRD FIEK+  MN+LM+   +DGK+P+P ILKP+PLWTGKQ+F+LII
Sbjct: 533  IVQDTLTAIRKMTKRDVFIEKEQMMNLLMFLPIWDGKMPRPAILKPKPLWTGKQIFSLII 592

Query: 586  PKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            P  +N+ RT + H D+ D G    ++ GDT V +E GEL+ G LCK+TLGTS GSL+H+ 
Sbjct: 593  PGNVNMIRTHSTHPDDEDDGPNKWISPGDTKVMVEHGELVMGILCKRTLGTSAGSLLHIC 652

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
              E+G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +
Sbjct: 653  MLELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEV 712

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
            I++A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKG
Sbjct: 713  IQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKG 772

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF
Sbjct: 773  SNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 832

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            +FHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+
Sbjct: 833  YFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGL 892

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
                +E QTL ++K+    F++ FRF+   E +      +E I DL    E+    + E 
Sbjct: 893  CGEMVEFQTLPTVKLSNKAFERKFRFDPSNERYLRRVFTEEVIKDLMGSGEVISELETEW 952

Query: 942  QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
            ++L+ DR  L  +I  SG+S   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V +
Sbjct: 953  EQLQKDREAL-RQIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRE 1011

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L  +  +V GED LS +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+R
Sbjct: 1012 LLNKCVIVAGEDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETR 1071

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F Q+ V PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K
Sbjct: 1072 FQQAQVNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPK 1131

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
             PSL+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  
Sbjct: 1132 APSLTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVNV 1191

Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+
Sbjct: 1192 YYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1249

Query: 1242 KLILRIRIMNDEAPKGELNDES------AEDDVFLKKIESNMLTEMALRGV--------- 1286
            KL+LRIRIMN +   G+  D +       +DD+FL+ IE+NML++M L+G+         
Sbjct: 1250 KLVLRIRIMNSD--DGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGIEAISKVYMH 1307

Query: 1287 -------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLG 1315
                                           +++ V+   DVD  RT SN + EI  VLG
Sbjct: 1308 LPQNDSKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLG 1367

Query: 1316 IEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRC 1375
            IEAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRC
Sbjct: 1368 IEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1427

Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS 1435
            SFEETVD+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  I +    
Sbjct: 1428 SFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKMGIPIPQAH 1487

Query: 1436 YMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSP-NLRLSPVTDAQFSPYV--------G 1486
              + +  GM       + TP     MSPG   +P N   +P   + +SP+         G
Sbjct: 1488 GADIMASGMFFGS---AATPS----MSPGAAMTPWNQGATPYVGSAWSPHNLMGSGMTPG 1540

Query: 1487 GMAFSPTSSPGYSPSSPGY-----SPSSPGYSP--TSP-------------------GYS 1520
            G AFSP+++   S  SPGY     +P SP  SP   SP                     +
Sbjct: 1541 GPAFSPSAASDASGMSPGYGAWSPTPQSPAMSPFMASPHGQSPSYSPSSPSFQPTSPSMT 1600

Query: 1521 PTSPGYSPTSPGYSPTSP 1538
            P SPGYSPTSPGYSPTSP
Sbjct: 1601 PVSPGYSPTSPGYSPTSP 1618



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/185 (39%), Positives = 91/185 (49%), Gaps = 55/185 (29%)

Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA---------------YSP 1612
            ++  SP YSPTSPSYSPTSP+YSP+SP ++P + S    S                 YSP
Sbjct: 1795 FAGGSPQYSPTSPSYSPTSPNYSPSSPQHTPAASSRYSPSSPNYSPSSPSYSPTSPQYSP 1854

Query: 1613 TSPAYSPTSPAYSPTSPSYSPTSPSYSP-------------------------------- 1640
             S  YSPTSP Y+PTSPSYSP SP+YS                                 
Sbjct: 1855 HSTKYSPTSPTYTPTSPSYSPASPAYSSQPPRYSPSSPSYSPTSPITLPPSPYYSRSSST 1914

Query: 1641 ---TSPSYSPTSPSYSPTSPSYSP-TSPAYSPTSPGYSPTSPSYSPT-SPTYSPTSPSYN 1695
               +S  Y+ +SP YSPT P     TSP YSPT P Y  +  + + T SPTY P    Y+
Sbjct: 1915 YTFSSRDYTYSSPPYSPTIPQDEMFTSPVYSPTIPKYFRSDINRNRTESPTYYPL---YS 1971

Query: 1696 PQSAK 1700
            P S++
Sbjct: 1972 PISSR 1976



 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/181 (39%), Positives = 92/181 (50%), Gaps = 35/181 (19%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA---------------YSP 1668
            ++  SP YSPTSPSYSPTSP+YSP+SP ++P + S    S                 YSP
Sbjct: 1795 FAGGSPQYSPTSPSYSPTSPNYSPSSPQHTPAASSRYSPSSPNYSPSSPSYSPTSPQYSP 1854

Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLS------------- 1715
             S  YSPTSP+Y+PTSP+YSP SP+Y+ Q  +YSPS      +  ++             
Sbjct: 1855 HSTKYSPTSPTYTPTSPSYSPASPAYSSQPPRYSPSSPSYSPTSPITLPPSPYYSRSSST 1914

Query: 1716 ---PASPYSPTSPNYSPTS-SSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYS 1771
                +  Y+ +SP YSPT       TSP YSP+ P Y  S        +P Y    P YS
Sbjct: 1915 YTFSSRDYTYSSPPYSPTIPQDEMFTSPVYSPTIPKYFRSDINRNRTESPTY---YPLYS 1971

Query: 1772 P 1772
            P
Sbjct: 1972 P 1972



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 89/187 (47%), Positives = 109/187 (58%), Gaps = 21/187 (11%)

Query: 1505 YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT------------SP 1552
            ++  SP YSPTSP YSPTSP YSP+SP ++P + +    S                  SP
Sbjct: 1795 FAGGSPQYSPTSPSYSPTSPNYSPSSPQHTPAASSRYSPSSPNYSPSSPSYSPTSPQYSP 1854

Query: 1553 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1612
              +     YSPTSP+Y+PTSPSYSP SP+YS   P YSP+SPSYSPTSP   P SP YS 
Sbjct: 1855 HST----KYSPTSPTYTPTSPSYSPASPAYSSQPPRYSPSSPSYSPTSPITLPPSPYYSR 1910

Query: 1613 TSPAYSPTSPAYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPT-SPAYSPTS 1670
            +S  Y+ +S  Y+ +SP YSPT P     TSP YSPT P Y  +  + + T SP Y P  
Sbjct: 1911 SSSTYTFSSRDYTYSSPPYSPTIPQDEMFTSPVYSPTIPKYFRSDINRNRTESPTYYPL- 1969

Query: 1671 PGYSPTS 1677
              YSP S
Sbjct: 1970 --YSPIS 1974


>gi|392898787|ref|NP_500523.4| Protein AMA-1 [Caenorhabditis elegans]
 gi|380865455|sp|P16356.3|RPB1_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit B1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit
 gi|351061691|emb|CCD69532.1| Protein AMA-1 [Caenorhabditis elegans]
          Length = 1856

 Score = 1723 bits (4463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 882/1629 (54%), Positives = 1135/1629 (69%), Gaps = 134/1629 (8%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMA 74
            V  VQFGIL P+EI++MSV  +E  E  E GKPK GGL DPR G IDR+ +C TC  N+ 
Sbjct: 15   VSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLT 74

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NPKN 132
            +CPGHFGHLELAKP+FHIGF+   L I+R VCF C ++L D+   +  + LK    N K 
Sbjct: 75   DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKK 134

Query: 133  RLKKILDACKNKTKCEGGDEID--------VPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            RL  I D CK K+ CEG  E +         P  DG    KK  GGCG  QP     G+ 
Sbjct: 135  RLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDG----KKVAGGCGRYQPSYRRVGID 190

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K  +  N+D +      ERK  LTAERVL V ++I+DED  ++G++P++ARP+WM
Sbjct: 191  INAEWK--KNVNEDTQ------ERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWM 242

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I  VLP+PP  VRP+          DDLTH+L+ II+ N+ L+R E NGA AH++++  +
Sbjct: 243  ICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR 302

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DN +PG P ATQ+ GRP+KSI  RLK KEGRIRGNLMGKRVDFSARTVIT
Sbjct: 303  LLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVIT 362

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + ID +GVP +IA NLT+PE VTP+N+++L+ELV  G    PG   AKYIIR++G 
Sbjct: 363  ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPG---AKYIIRENGA 419

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLRY  +++D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+STFR+N
Sbjct: 420  RVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMN 479

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQDTL   
Sbjct: 480  LSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAV 539

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            R +TKRD FI+    M++LM+   +DGKVPQP ILKP+PLWTGKQVF+LIIP  +N+ RT
Sbjct: 540  RMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRT 599

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V IE GELLSG +C KT+G S G+L+HV+  E+G + A
Sbjct: 600  HSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIA 659

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
              F  H Q ++N WL++   +IGIGDTIAD  T   I +TI KAK +V ++I++A +  L
Sbjct: 660  ANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDL 719

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FENKVNQ+LN ARD  GSSAQKSLSE NN K+MV +GSKGS INISQ+ 
Sbjct: 720  EPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVI 779

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGRE
Sbjct: 780  ACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGRE 839

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNSL  ++Q  YGEDG+D +W+E+Q 
Sbjct: 840  GLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQN 899

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDD-LKTIKELRD---VFDAEVQKLEA 946
            + ++K   + F++ FR ++ +      ++ + Y +D ++ I+E  D   + ++E  +LE 
Sbjct: 900  MPTMKPNNAVFERDFRMDLTDN----KFLRKNYSEDVVREIQESEDGISLVESEWSQLEE 955

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR +L  +I   GD+   LP NL+RLIWNAQK FKVD R+P ++ P+ V+  V +L ++L
Sbjct: 956  DR-RLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKL 1014

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +V G D +S +AQ NATL  NILLRST  +K +  + +L  EAF+W++GEIESRF Q++
Sbjct: 1015 IIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAI 1074

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
              PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K +KTPSL+
Sbjct: 1075 AQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLT 1134

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL        E+AK+V C LE+TTL+ VT  T ++YDPDP  T+I ED E+V  +YEMP
Sbjct: 1135 VFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMP 1194

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D++  + SPWLLRIEL+R+ MVDKKL+M  +A++I+  F +D+  I+ DDNA+KL+ R
Sbjct: 1195 DHDLS--RTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFR 1252

Query: 1247 IRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------------- 1286
            +RI  ++  KGE  +E     EDDVFL+ IE+NML+++ L+G+                 
Sbjct: 1253 LRIAGED--KGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310

Query: 1287 -----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
                                    LL V+    +D  RTTSN + EI EVLGIEAVR+A+
Sbjct: 1311 RIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAI 1370

Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
              E+  VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR + G +MRCSFEETVDI
Sbjct: 1371 EREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDI 1430

Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFG 1443
            L++AAV AE D ++GV+ENIMLGQLA  GTG   L L+ E  K  +E+     M G  +G
Sbjct: 1431 LMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYG 1490

Query: 1444 ----------MTPARSPVSG--TPYHDGM--------MSPGYLFSPNLRLSPVTDAQFSP 1483
                       +PA SP +   TP + G         MSPG  FSP    +  TD   SP
Sbjct: 1491 SFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSP----AGNTDGGASP 1546

Query: 1484 YVGGMAFSPTSSPGYSPSSPG-----YSPSSPGYSPTSPG-YSPTSPGYSPTSPGYSPTS 1537
            +  G         G+SP+SPG      SP +P Y   SPG YSP+SP +S TSP YSPTS
Sbjct: 1547 FNEG---------GWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPTS 1597

Query: 1538 PTYSPSSPG 1546
            P+YSP+SP 
Sbjct: 1598 PSYSPTSPA 1606



 Score =  137 bits (344), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 85/130 (65%), Positives = 99/130 (76%), Gaps = 5/130 (3%)

Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTS 1724
            YSPTSP YSPTSP+YSPTSPTYSPTSPSY         S  YSPSSP  SP SP YSPTS
Sbjct: 1686 YSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTS 1745

Query: 1725 PNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGY 1783
            P YSPTS  YSP+SP+Y+PSSPTY+P+SP   G  +P YSP+SP YSP++  Y+PS+P Y
Sbjct: 1746 PQYSPTSPQYSPSSPTYTPSSPTYNPTSP--RGFSSPQYSPTSPTYSPTSPSYTPSSPQY 1803

Query: 1784 SPSSTSQYTP 1793
            SP+S + YTP
Sbjct: 1804 SPTSPT-YTP 1812



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 63/95 (66%), Gaps = 21/95 (22%)

Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSP-YNAGGG------------------NPDYSPSS 1767
            YSPTS +YSPTSP+YSP+SPTYSP+SP Y +GGG                  +P YSP+S
Sbjct: 1686 YSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTS 1745

Query: 1768 PQYSPSA-GYSPSAPGYSPSSTSQYTPQTNRDDST 1801
            PQYSP++  YSPS+P Y+PSS + Y P + R  S+
Sbjct: 1746 PQYSPTSPQYSPSSPTYTPSSPT-YNPTSPRGFSS 1779


>gi|270010112|gb|EFA06560.1| hypothetical protein TcasGA2_TC009471 [Tribolium castaneum]
          Length = 1899

 Score = 1722 bits (4460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 891/1633 (54%), Positives = 1130/1633 (69%), Gaps = 127/1633 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRTVKRVQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKMGGLMDPRQGVIDRHSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP+FH+GF+   +  +R VCF CSK+L   ++ K K+ +
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKTLRCVCFYCSKLLVSPNNPKIKEVV 125

Query: 126  KIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP---LKKNKGGCGAQQPKLTI 180
                  P+ RL  + D CK K  CEGGDE+DV G++GE+P    K+  GGCG  QP +  
Sbjct: 126  MKSKGQPRKRLAFVYDLCKGKNICEGGDEMDV-GKEGEDPNQAKKQGHGGCGRYQPNIRR 184

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ + AE+K     N+D +      ERK  L+AERV  +LK I+DE+C +LG++PK+AR
Sbjct: 185  TGLDLTAEWK---HLNEDSQ------ERKIALSAERVWEILKHITDEECFILGMDPKFAR 235

Query: 241  PDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMI+ VLP+PP             R  DDLTH+LA II+ N  L++ E  GA AH+IS
Sbjct: 236  PDWMIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKLADIIKANNELQKNEAAGAAAHVIS 295

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I SRLK KEGRIRGNLMGKRVDFSAR
Sbjct: 296  ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKRVDFSAR 355

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA NLT+PE VTP+N +++ ELV+ G    PG   AKYIIR
Sbjct: 356  TVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFDKMSELVQRGNSQYPG---AKYIIR 412

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  KSSD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 413  DNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWST 472

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  L + P+ I++PQ+N+PVMGIVQDT
Sbjct: 473  FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHITPRQIITPQANKPVMGIVQDT 532

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD FIEK+  MN+LM+   +DGK+P+P ILKP+PLWTGKQ+F+LIIP  +N
Sbjct: 533  LTAIRKMTKRDVFIEKEQMMNLLMFLPIWDGKMPRPAILKPKPLWTGKQIFSLIIPGNVN 592

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D+ D G    ++ GDT V +E GEL+ G LCK+TLGTS GSL+H+   E+G
Sbjct: 593  MIRTHSTHPDDEDDGPNKWISPGDTKVMVEHGELVMGILCKRTLGTSAGSLLHICMLELG 652

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A 
Sbjct: 653  HEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 712

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 713  NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 772

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 773  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 832

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 833  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMV 892

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E QTL ++K+    F++ FRF+   E +      +E I DL    E+    + E ++L+ 
Sbjct: 893  EFQTLPTVKLSNKAFERKFRFDPSNERYLRRVFTEEVIKDLMGSGEVISELETEWEQLQK 952

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L  +I  SG+S   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V +L  + 
Sbjct: 953  DREAL-RQIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLNKC 1011

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +V GED LS +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+ 
Sbjct: 1012 VIVAGEDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQ 1071

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
            V PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+
Sbjct: 1072 VNPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 1131

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMP
Sbjct: 1132 VFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMP 1191

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LR
Sbjct: 1192 DFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLR 1249

Query: 1247 IRIMNDEAPKGELNDES------AEDDVFLKKIESNMLTEMALRGV-------------- 1286
            IRIMN +   G+  D +       +DD+FL+ IE+NML++M L+G+              
Sbjct: 1250 IRIMNSD--DGKFGDGADEDVDKMDDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQND 1307

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                      +++ V+   DVD  RT SN + EI  VLGIEAVR
Sbjct: 1308 SKKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVR 1367

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
            +++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEET
Sbjct: 1368 KSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1427

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            VD+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  I +      + +
Sbjct: 1428 VDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKMGIPIPQAHGADIM 1487

Query: 1441 EFGMTPARSPVSGTPYHDGMMSPGYLFSP-NLRLSPVTDAQFSPYV--------GGMAFS 1491
              GM       + TP     MSPG   +P N   +P   + +SP+         GG AFS
Sbjct: 1488 ASGMFFGS---AATPS----MSPGAAMTPWNQGATPYVGSAWSPHNLMGSGMTPGGPAFS 1540

Query: 1492 PTSSPGYSPSSPGY-----SPSSPGYSP--TSP-------------------GYSPTSPG 1525
            P+++   S  SPGY     +P SP  SP   SP                     +P SPG
Sbjct: 1541 PSAASDASGMSPGYGAWSPTPQSPAMSPFMASPHGQSPSYSPSSPSFQPTSPSMTPVSPG 1600

Query: 1526 YSPTSPGYSPTSP 1538
            YSPTSPGYSPTSP
Sbjct: 1601 YSPTSPGYSPTSP 1613



 Score = 54.3 bits (129), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 47/91 (51%), Gaps = 31/91 (34%)

Query: 1707 YSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPS----------------------YSP 1743
            ++  SP+ SP SP YSPTSPNYSP+S  ++P + S                      YSP
Sbjct: 1790 FAGGSPQYSPTSPSYSPTSPNYSPSSPQHTPAASSRYSPSSPNYSPSSPSYSPTSPQYSP 1849

Query: 1744 SSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
             S  YSP+SP         Y+P+SP YSP++
Sbjct: 1850 HSTKYSPTSP--------TYTPTSPSYSPAS 1872


>gi|324120518|dbj|BAJ78650.1| RNA polymerase II largest subunit [Isolepisma japonica]
          Length = 1775

 Score = 1722 bits (4460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 891/1638 (54%), Positives = 1142/1638 (69%), Gaps = 111/1638 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I   ET E G+PK GGL DPR G +DR  +
Sbjct: 7    SKAPLRTVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVMDRLSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP++HIGF+   + I+R VCF CSK+L    + K K+  
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVYHIGFITKTIKILRCVCFYCSKLLVSPSNPKIKEIV 126

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDV----PGQDGEEPLKKNKGGCGAQQPKLT 179
            +K +  P+ R   + D CK K  CEGGDE+D+    P     +P +   GGCG  QP + 
Sbjct: 127  MKSKGQPRKRFAFVYDLCKGKNICEGGDEMDIQKDNPDDPANQPKRSGHGGCGRYQPSIR 186

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
              G+ + AE+K     N+D +      E+K  L+AERV  + K ISDE+C +LG++PK+A
Sbjct: 187  RIGLDLTAEWK---HVNEDSQ------EKKINLSAERVWEIFKHISDEECFILGMDPKFA 237

Query: 240  RPDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RPDWMI+ VLP+PP             R  DDLTH+LA II+ N  L R E+ GA AH+I
Sbjct: 238  RPDWMIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKLADIIKANNELTRNEQAGAAAHVI 297

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            +E  ++LQFH+AT  DN++PG P+A Q+SG+PIK+I +RLK KEGRIRGNLMGKRVDFSA
Sbjct: 298  AENIKMLQFHVATLVDNDMPGMPKAMQKSGKPIKAIKNRLKGKEGRIRGNLMGKRVDFSA 357

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVITPDP + IDQ+GVP S+A NLT+PE VTP+NI+++++LV  G    PG   AKYI+
Sbjct: 358  RTVITPDPNLRIDQVGVPRSVAQNLTFPEIVTPFNIDKMQDLVRRGNSQYPG---AKYIV 414

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+S
Sbjct: 415  RDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWS 474

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLSVTSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQSN+PVMGIVQD
Sbjct: 475  TFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQSNKPVMGIVQD 534

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK+TKRD F+EK+  MNILM    +DGK+PQP+ILKP+PLWTGKQVF+LIIP  +
Sbjct: 535  TLTAVRKMTKRDVFLEKEQMMNILMHLPIWDGKMPQPSILKPKPLWTGKQVFSLIIPGNV 594

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            N+ RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLG+S GSL+H+   E+
Sbjct: 595  NVIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGSSGGSLLHICMLEL 654

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A
Sbjct: 655  GHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKA 714

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS IN
Sbjct: 715  HNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNIN 774

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHA
Sbjct: 775  ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 834

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    
Sbjct: 835  MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGET 894

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E Q+L ++K+    F+K F+F+   E +      ++ + +L    ++    + E ++L 
Sbjct: 895  VEFQSLPTIKLSNRLFEKRFKFDPTNERYLRRVFTEDVLRELMGSGDVISELEKEWEQLV 954

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L  +I  SG++S  LP NL+R+IWN QK F ++ R P+D+ P+ V++ V  L ++
Sbjct: 955  KDREAL-RQIFPSGENSVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLSVIQGVKDLLQK 1013

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
              +V GED LS +A +NATL F  L+RST  +K +  + RL+ EAFEW+IGEIE+RF Q+
Sbjct: 1014 CVIVAGEDHLSRQANENATLLFQCLVRSTLCTKVISDDSRLSAEAFEWLIGEIEARFQQA 1073

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
             V PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL
Sbjct: 1074 QVQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSL 1133

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEM
Sbjct: 1134 TVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEM 1193

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+L
Sbjct: 1194 PDFD--PSRISPWLLRIELDRKRMTDKKLTMEHIAEKINAGFGDDLNCIFNDDNAEKLVL 1251

Query: 1246 RIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV---------------- 1286
            RIRIMN +  K +  +E     EDD+FL+ IE+NML++M L+G+                
Sbjct: 1252 RIRIMNSDDSKFQDEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQQESK 1311

Query: 1287 ------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                    +L+ V+   DVD  RT SN + EI  VLGIEAVR++
Sbjct: 1312 KKIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKS 1371

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            +  E+  V+SF G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD
Sbjct: 1372 VEKEMNAVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1431

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIE--LQLPSYM--E 1438
            +L+DAA  AE D +RGV+ENI++GQLA +GTG   L L+ E  K+ IE  + + + M   
Sbjct: 1432 VLMDAASHAEVDPMRGVSENIIMGQLARMGTGCFDLLLDAEKCKHGIEIPMNIGAGMMGA 1491

Query: 1439 GLEFGM--TPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            G+ FG   TP+      TP+  G  +P Y  +     SP   +  +P  GG  FSP+ S 
Sbjct: 1492 GMFFGTAGTPSSMSPQMTPWAQG-ATPAYAST----WSPGLGSGMTP--GGPGFSPSGSS 1544

Query: 1497 GYSPSSPGYSPS---SPGYSPTSPGYSPTSPGYSPTSPG------------YSPTSPTYS 1541
              S  SP YSP+    PG SPTSPG  P +  Y P+               Y+PTSP+ +
Sbjct: 1545 DASGLSPAYSPAWSPQPG-SPTSPG--PAASPYVPSPAAGMSPSYSPSSPAYAPTSPSMT 1601

Query: 1542 PSSPGYSPTSPAYSPTSP 1559
            P+SP YSPTSP+YSPTSP
Sbjct: 1602 PASPNYSPTSPSYSPTSP 1619



 Score = 60.8 bits (146), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 72/125 (57%), Gaps = 7/125 (5%)

Query: 1627 TSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPS-YSPTSPAYSPT-SPGYSPTSPSYSPT 1683
            T+ + S  SP  +P +   +P  + ++SP   S  +P  P +SP+ S   S  SP+YSP 
Sbjct: 1497 TAGTPSSMSPQMTPWAQGATPAYASTWSPGLGSGMTPGGPGFSPSGSSDASGLSPAYSPA 1556

Query: 1684 -SPT-YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY 1741
             SP   SPTSP   P ++ Y PS A   S      +  Y+PTSP+ +P S +YSPTSPSY
Sbjct: 1557 WSPQPGSPTSPG--PAASPYVPSPAAGMSPSYSPSSPAYAPTSPSMTPASPNYSPTSPSY 1614

Query: 1742 SPSSP 1746
            SP+SP
Sbjct: 1615 SPTSP 1619



 Score = 45.1 bits (105), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 61/127 (48%), Gaps = 27/127 (21%)

Query: 1683 TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSS-YSPTSPSY 1741
            T+ T S  SP   P +   +P+ A S  SP L   S  +P  P +SP+ SS  S  SP+Y
Sbjct: 1497 TAGTPSSMSPQMTPWAQGATPAYA-STWSPGL--GSGMTPGGPGFSPSGSSDASGLSPAY 1553

Query: 1742 SPS-SPTYSPSSPYNAGGGNPDYSPS-------------------SPQYSPSA-GYSPSA 1780
            SP+ SP   P SP + G     Y PS                   SP  +P++  YSP++
Sbjct: 1554 SPAWSP--QPGSPTSPGPAASPYVPSPAAGMSPSYSPSSPAYAPTSPSMTPASPNYSPTS 1611

Query: 1781 PGYSPSS 1787
            P YSP+S
Sbjct: 1612 PSYSPTS 1618


>gi|121701053|ref|XP_001268791.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Aspergillus clavatus NRRL 1]
 gi|119396934|gb|EAW07365.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Aspergillus clavatus NRRL 1]
          Length = 1765

 Score = 1720 bits (4454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 924/1770 (52%), Positives = 1208/1770 (68%), Gaps = 116/1770 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            FPYS A +  V+ +QFG+ SP+EI++MSVV +E+ ET   +R +P+  GL+DPRLGTIDR
Sbjct: 6    FPYSKAPLRTVKEIQFGLFSPEEIKRMSVVHVEYPETMDEQRMRPRTKGLNDPRLGTIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILAD--EDDHK 120
            +  CETC     ECPGHFGH+ELA P+FHIGF+  V  ++ +VC NC KI AD  + D K
Sbjct: 66   QWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCGKIKADTNQSDSK 125

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEG---GDEIDVPGQDGEEPLKKNKGGCGAQQPK 177
            F +AL++R+PK R   I    K+   CE     DE +   ++  +P++++ GGCG  QP 
Sbjct: 126  FLEALRMRDPKRRFDHIWRLSKDVLICEADPPADEDEPFSKESSKPVRRH-GGCGNAQPT 184

Query: 178  LTIEGMKMIAEYKAQRKKND-DQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
            +  EG+ ++  +K  +   D D  Q PE    K+ +T    L V + IS ED +++GL+ 
Sbjct: 185  IRKEGITLVGTWKPNKSMMDEDDMQQPE----KKVITPLMALNVFRTISQEDVRIMGLSN 240

Query: 237  KYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERNG 283
             YARP+WMI+ VLP+PPPPV             R  DDLT++LA IIR N+N++R E+ G
Sbjct: 241  DYARPEWMIITVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIIRANQNVQRCEQEG 300

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGK 343
            AP H++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I SRLK KEGR+R NLMGK
Sbjct: 301  APEHVVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGK 360

Query: 344  RVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKT 403
            RVDFSARTVIT DP +++D++GVP SIA  LTYPE VTPYNIE+L++LV  GP+  PG  
Sbjct: 361  RVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANGPNEHPG-- 418

Query: 404  GAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
             A+YI+RD+G+R+DLR+ +++    L  G+KVERHL DGD +LFNRQPSLHK S+M HR+
Sbjct: 419  -ARYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDVILFNRQPSLHKESMMAHRV 477

Query: 464  KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
            ++MPYSTFR+NLSVT+PYNADFDGDEMN+HVPQS E+RAE+ +L +VP  IVSPQ N P+
Sbjct: 478  RVMPYSTFRMNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSPQRNGPL 537

Query: 524  MGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNL 583
            MGIVQDTL G  KI +RD F+ K+  MNI++W  D+DG +P P ILKPRP WTGKQ+ ++
Sbjct: 538  MGIVQDTLCGIYKICRRDIFLTKEQVMNIMLWVPDWDGVIPPPAILKPRPRWTGKQMISM 597

Query: 584  IIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
             +P  +NL R    ++   +      D  V I  G+L+ G L KKT+G S G +IH I+ 
Sbjct: 598  ALPSGLNLLRVEKDNSSLAEKFSPLTDGGVLIHGGQLMYGMLSKKTVGASGGGVIHTIFN 657

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
            E GP+ A  F    Q +VNYWLL N FSIGIGDTI DA T++ I + + + K  V+ +  
Sbjct: 658  EYGPETAVAFFNGAQTIVNYWLLHNGFSIGIGDTIPDAVTIQRIENCVRERKQEVEAITA 717

Query: 704  QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
             A + +LEP PG  + E+FE+KV++ LN ARDEAGS  +KSL + NN   M  +GSKGS 
Sbjct: 718  SATENTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGST 777

Query: 764  INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
            INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFF
Sbjct: 778  INISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFF 837

Query: 824  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
            HAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGDVIQF+YGEDG+D 
Sbjct: 838  HAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQFIYGEDGLDG 897

Query: 884  VWIESQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
              IE+Q +D +K    +  + FR + MD E +  P  +  E  +++    E++   D E 
Sbjct: 898  GHIENQRVDIIKCSDEKLRERFRVDLMDPERSLGPEVL--EQANEIAGDVEVQRYLDEEW 955

Query: 942  QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
            ++L  DR  L + +    D    LP+N++R++  A+ TF++     SD+HP EVV  V  
Sbjct: 956  EQLLKDRAFLRS-VVKEDDEMMQLPINVQRILETARSTFRIREGAISDLHPAEVVPQVQS 1014

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L +RL VV G+DP+S EAQ+NATL F   LRS  A +R++ E+ + + AF+ V+G IESR
Sbjct: 1015 LLDRLLVVRGDDPISHEAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGAIESR 1074

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F ++  +PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA  IK
Sbjct: 1075 FAKAAASPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIK 1134

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPS++V+  P     KE AK ++ A+E+T+LRSVTEATE++YDPD   T+IE D + V+S
Sbjct: 1135 TPSMTVYQMPSKCHDKESAKQLRSAVEHTSLRSVTEATEIYYDPDIQTTVIENDRDMVES 1194

Query: 1182 YYEMPDEDI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
            Y+ +P ED+  A  + S WLLRI L+R  ++DK L++  VA +I Q +  D+  IF+D+N
Sbjct: 1195 YFIIP-EDVTDASSRQSKWLLRIILSRPKLLDKGLTVQDVAARIKQAYPKDIAVIFSDNN 1253

Query: 1240 ADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------------- 1286
            AD+ ++RIR + D     E +D+  E DV LKK+E ++L  + LRGV             
Sbjct: 1254 ADEQVIRIRQIQDYKED-EEHDDDIEYDVTLKKLEQHLLDTLTLRGVQGVERAFINEKSK 1312

Query: 1287 -------NLLAV----MCHE-----------------DVDARRTTSNHLIEIIEVLGIEA 1318
                   +L A     +C E                  VDA RT SN  IE+ EV GIEA
Sbjct: 1313 VRVLEDGSLFASKTDPLCKEWVLETSGSSLGEVLAVPGVDASRTYSNQFIEVFEVFGIEA 1372

Query: 1319 VRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE 1378
             R A+L EL  V++FDGSYVN+RHLA+L D MT RG+L  +TRHGINR D G +MRCSFE
Sbjct: 1373 ARTAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFE 1432

Query: 1379 ETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME 1438
            ETV+ILL+AA F E D  RGV+EN++LGQ+AP GTG+  LYL+  +L   +       + 
Sbjct: 1433 ETVEILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDLYLDQTLLNTVVSNNARFGVM 1492

Query: 1439 GLEFGMTPARSPVSGTPYHDG--MMSPGYLFS--PNLRLSPVTDA---------QFSPYV 1485
            G         S  + T Y  G  M    Y+ +  P+   SP+  A         ++ P  
Sbjct: 1493 GAIGAKDAIISDGAATQYDTGSPMQESAYIGTPDPDSAFSPIGQAGAETPGGFTEYQPTG 1552

Query: 1486 G-GMAFSP--TSSPGYSPSSP-GYSPSSPGYSPTSPGYSPTSPGYSP----TSPGYSPTS 1537
            G G  FSP  TS  GYSP+SP   +P+SPGYSPT+  YSP +PG +     TSPG+  TS
Sbjct: 1553 GFGGGFSPAATSPAGYSPTSPFSANPTSPGYSPTT-SYSPIAPGITSPRFNTSPGFM-TS 1610

Query: 1538 PTYSPSSPGYSPTSPAYSPTSPSY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
            P +SP SP ++PTSPAYSPTSP+Y   SPTSPSYSPTSP +SPTSP+YSPTSPS+SP SP
Sbjct: 1611 PGFSPVSPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASP 1670

Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYS 1653
            ++SPTSPSYSPTSPA        SPT    SPTSP Y+PTSP +SPTSP +YSPTSP+++
Sbjct: 1671 AFSPTSPSYSPTSPAIGGAGRHLSPT----SPTSPKYTPTSPGWSPTSPQTYSPTSPNFA 1726

Query: 1654 PTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
                  SPTSP   PTSPGYSPTSP++SP+
Sbjct: 1727 G-----SPTSPG-GPTSPGYSPTSPAFSPS 1750



 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/272 (46%), Positives = 161/272 (59%), Gaps = 49/272 (18%)

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1592
            Y   SP    +  G      A+SP   + + T   ++     Y PT       SP+   T
Sbjct: 1510 YDTGSPMQESAYIGTPDPDSAFSPIGQAGAETPGGFT----EYQPTGGFGGGFSPA--AT 1563

Query: 1593 SPS-YSPTSP-SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
            SP+ YSPTSP S +PTSP YSPT+ +YSP +P    TSP ++ TSP +  TSP +SP SP
Sbjct: 1564 SPAGYSPTSPFSANPTSPGYSPTT-SYSPIAPGI--TSPRFN-TSPGFM-TSPGFSPVSP 1618

Query: 1651 SYSPTSPSYSPTSPAY---SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY 1707
            S++PTSP+YSPTSPAY   SPTSP YSPTSP +SPTSP YSPTSPS+             
Sbjct: 1619 SFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSF------------- 1665

Query: 1708 SPSSPRLSPASP-YSPTSPNYSPTS----------SSYSPTSPSYSPSSPTYSPSSPYNA 1756
                   SPASP +SPTSP+YSPTS          S  SPTSP Y+P+SP +SP+SP   
Sbjct: 1666 -------SPASPAFSPTSPSYSPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSPQTY 1718

Query: 1757 GGGNPDY--SPSSPQYSPSAGYSPSAPGYSPS 1786
               +P++  SP+SP    S GYSP++P +SPS
Sbjct: 1719 SPTSPNFAGSPTSPGGPTSPGYSPTSPAFSPS 1750



 Score =  158 bits (399), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/194 (54%), Positives = 130/194 (67%), Gaps = 24/194 (12%)

Query: 1603 YSPTSPAYSPTSPAYSPTSPA-YSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
            Y PT       SPA   TSPA YSPTSP S +PTSP YSPT+ SYSP +P    TSP ++
Sbjct: 1548 YQPTGGFGGGFSPA--ATSPAGYSPTSPFSANPTSPGYSPTT-SYSPIAPGI--TSPRFN 1602

Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP- 1719
             TSP +  TSPG+SP SPS++PTSP YSPTSP+Y             SP+SP  SP SP 
Sbjct: 1603 -TSPGFM-TSPGFSPVSPSFAPTSPAYSPTSPAYG----------QASPTSPSYSPTSPG 1650

Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPS 1779
            +SPTSPNYSPTS S+SP SP++SP+SP+YSP+SP   G G    SP+SP    S  Y+P+
Sbjct: 1651 FSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAGR-HLSPTSPT---SPKYTPT 1706

Query: 1780 APGYSPSSTSQYTP 1793
            +PG+SP+S   Y+P
Sbjct: 1707 SPGWSPTSPQTYSP 1720


>gi|328793442|ref|XP_623281.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
            [Apis mellifera]
          Length = 1883

 Score = 1719 bits (4453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 881/1636 (53%), Positives = 1121/1636 (68%), Gaps = 136/1636 (8%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV    I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L    + K K+  
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPKIKEIV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK---GGCGAQQPKLTI 180
            +K +  P+ RL  + D CK+K  CEGGDE+D+  ++ E+   + K   GGCG  QP L  
Sbjct: 126  MKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQEQQSIERKPGHGGCGRYQPNLRR 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ + AE+      N+D +      E+K  LTAER   +LK I+DE+  +LG++PK+AR
Sbjct: 186  SGLDVTAEWT---HVNEDSQ------EKKMALTAERAWEILKHITDEESFILGMDPKFAR 236

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWM++ VLP+PP  VRP+          DDLTH+LA II+ N  L R E+ GA AH+IS
Sbjct: 237  PDWMVVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVIS 296

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 297  ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ELV  G    PG   AKYI+R
Sbjct: 357  TVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPG---AKYIVR 413

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  K SD HL+ GY+VERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 414  DNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWST 473

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+H PQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 474  FRMNLSCTSPYNADFDGDEMNLHAPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDT 533

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD FIEK+  MNILM+   +DGK+PQP ILKP+PLWTGKQ+F+LIIP  +N
Sbjct: 534  LTAVRKMTKRDVFIEKEQMMNILMFLPSWDGKMPQPCILKPKPLWTGKQIFSLIIPGNVN 593

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E+G
Sbjct: 594  MIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELG 653

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A 
Sbjct: 654  HEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 713

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 714  NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 773

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETV 893

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E Q L ++K+    F+K F+F+   E +      ++ + ++    E+    + E ++L  
Sbjct: 894  EFQNLPTIKLSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNK 953

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L  EI  SG+S   LP NL+R+IWN QK F ++ R P+D+ PM+V++ V  L ++ 
Sbjct: 954  DRAVL-REIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMKVIQGVKDLLDKC 1012

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +V G+D LS +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+ 
Sbjct: 1013 IIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQ 1072

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
            V+PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+
Sbjct: 1073 VSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 1132

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMP
Sbjct: 1133 VFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMP 1192

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D  P KISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LR
Sbjct: 1193 DFD--PNKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLR 1250

Query: 1247 IRIMNDEAPKGELNDESA----EDDVFLKKIESNMLTEMALRGV---------------- 1286
            IRIMN +  K + ++E      EDD+FL+ IE+NML++M L+G+                
Sbjct: 1251 IRIMNSDDNKFQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAK 1310

Query: 1287 ------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                    +L+ V+   DVD  RT SN + EI +VLGIEAVR++
Sbjct: 1311 KRIVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKS 1370

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            +  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSF     
Sbjct: 1371 VEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF----- 1425

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM----- 1437
                            V+ENI++GQL  IGTG   L L+ E  K  IE+ +         
Sbjct: 1426 ----------------VSENIIMGQLPRIGTGCFDLLLDAEKCKVGIEIPMAVGAGVMGT 1469

Query: 1438 EGLEFG--MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSS 1495
             G+ FG   TP+ SP   TP+     +PGY  S    +SP   +  +P  GG  FSP+ +
Sbjct: 1470 AGMFFGSVATPSMSP-QMTPWMGA--TPGYGAS---SMSPALGSGMTP--GGACFSPSGA 1521

Query: 1496 PGYSPSSPGYS-------------------PSSPGYSPTSPGYSPTSPGYSPTSPGYSPT 1536
               S  SP YS                   P SP     SP YSPTSP Y PTSP  +P+
Sbjct: 1522 SDASGLSPAYSAYSPQPGSPGSPGPSMSPYPMSPA-GGASPSYSPTSPAYLPTSPSITPS 1580

Query: 1537 SPTYSPSSPGYSPTSP 1552
            SP YSP+SP YSPTSP
Sbjct: 1581 SPNYSPTSPTYSPTSP 1596


>gi|443896740|dbj|GAC74083.1| ngg1-interacting factor 3 protein NIF3L1 [Pseudozyma antarctica T-34]
          Length = 1947

 Score = 1719 bits (4452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 928/1764 (52%), Positives = 1192/1764 (67%), Gaps = 117/1764 (6%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGETT-ERGKPKPGGLSDPRLGTIDRKMKCETCTANM 73
            + +V   I+ P + R +SV +IE  E   E GKP+ GGLSDPRLGT+DR  KC+TC    
Sbjct: 182  IGLVPIDIILPGDCRAISVCKIEVPEVKDEAGKPRIGGLSDPRLGTLDRNYKCQTCGEGH 241

Query: 74   AECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE-DDHKFKQALKIR--NP 130
             ECPGHFGH++LAKP+FHIG++  V  I+  VCF+C K+ AD   D  F Q +K    + 
Sbjct: 242  QECPGHFGHIDLAKPVFHIGYLGKVKKILECVCFHCGKLKADVLTDPVFDQIVKATRGSR 301

Query: 131  KNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYK 190
            K R +++ + C  K  CE  D  D      EE  K   GGCG  QP +  EG+K+  ++K
Sbjct: 302  KRRFQRVWEYCSKKMVCEADDPKDEDEMGFEEQAKPGHGGCGRVQPNIRREGLKLFTQWK 361

Query: 191  AQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP 250
              + +++D E+       K+ L A     VLK++S ED  +LGL+ ++ARPDWMIL V+P
Sbjct: 362  KGKGEDEDGEESAIAQPEKRPLPASEAHTVLKKMSSEDIAVLGLSEEHARPDWMILTVMP 421

Query: 251  IPPPPVRP------SDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
            +PPPPVRP       DDLT++LA +IR N  L++ E+ G PAHI+++F QLLQFH AT+ 
Sbjct: 422  VPPPPVRPSVQDGGEDDLTYKLADVIRANATLKKMEQEGTPAHILADFEQLLQFHCATFM 481

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q SGRPIKS+ +RLK KEGR+RGNLMGKRV+FSARTVIT DP + +D++
Sbjct: 482  DNDIAGQPQAMQSSGRPIKSVRARLKGKEGRLRGNLMGKRVNFSARTVITGDPLLELDEV 541

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA NLTYPE VT YN   L ELV  GP+  PG   AKY+IRD G+R+DL+Y  + 
Sbjct: 542  GVPKSIARNLTYPERVTAYNRAWLSELVRNGPNDYPG---AKYVIRDTGERIDLKY-NRR 597

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
            SD  L+ G+ VERHL DGD++LFNRQPSLHKMS+M HRIK+M YSTFRLNLSVT PYNAD
Sbjct: 598  SDMALQPGWIVERHLKDGDYILFNRQPSLHKMSMMSHRIKLMDYSTFRLNLSVTPPYNAD 657

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ ++  VP+ IVSPQ+N+PVMGIVQDTL G RK + RD  +
Sbjct: 658  FDGDEMNLHVPQSEETRAELSQIAWVPRQIVSPQANKPVMGIVQDTLCGIRKFSLRDCLL 717

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            +      +L+W  D+DG VP P ILKP+P W+GKQ+ ++ IPK IN+F       D DKG
Sbjct: 718  DYQQVQQVLLWVADWDGVVPMPCILKPKPYWSGKQILSMCIPKGINVF------LDKDKG 771

Query: 605  ILT--AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +      D  V IE GE++ G + KK +G S G LIH+I+ E GP   ++F    Q +VN
Sbjct: 772  LKNNFLKDDGVCIENGEIMYGVINKKVVGASAGGLIHIIFREKGPVVCKRFFSGVQRVVN 831

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            +WLL N FSIGIGDT+AD  T ++IN TIS AK  V + I+ A+   L+ E G T+ ESF
Sbjct: 832  FWLLHNGFSIGIGDTVADKATTDSINQTISDAKAAVMDYIEYARHDWLKVEAGMTLRESF 891

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E  VN+VLN ARD+ G+ A+ SL + NN+K MV AGSKGSFINISQM+ACVGQQ+VEGKR
Sbjct: 892  EANVNRVLNQARDDVGNHAESSLPDFNNVKQMVVAGSKGSFINISQMSACVGQQSVEGKR 951

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  R+LPHFTKDD+ PESRGFVENSYLRGLT QEFFFHAM GREGLIDTAVKT+ET
Sbjct: 952  IPFGFRHRSLPHFTKDDFTPESRGFVENSYLRGLTAQEFFFHAMAGREGLIDTAVKTAET 1011

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+ED+MV YDGTVRNS  +VIQF YGEDG+D   +E+QTL +LK+  ++F 
Sbjct: 1012 GYIQRRLVKALEDVMVCYDGTVRNSTNNVIQFAYGEDGIDGAQVETQTLLTLKLNDADFR 1071

Query: 903  KAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSS 962
              F  ++ +  +     L+  + D    +EL+D+ D E   LEADR+ L TEI  S    
Sbjct: 1072 HMFHVDLHDGGFRKGS-LRPGLGDWS--QELQDLLDEEFAILEADRHLLRTEIFQSDQVQ 1128

Query: 963  WPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKN 1022
              LP+N+ RL+ NAQ+ F +D R+PSD+ P E +  + ++ ERL V+ G+DP+S EAQ N
Sbjct: 1129 VRLPMNVARLVMNAQQIFHIDHRKPSDLSPAEAIIGLREVLERLVVIRGDDPISREAQLN 1188

Query: 1023 ATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIG 1082
            ATL F I LRS   SK V++ H + +EA+EW++GEIE +F +S+  PGEM G +AAQSIG
Sbjct: 1189 ATLLFKIHLRSYLCSKLVIERHHINKEAWEWILGEIEGQFARSVANPGEMCGTLAAQSIG 1248

Query: 1083 EPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKN 1142
            EPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN A+ IKTPS++V+L    + ++E AK 
Sbjct: 1249 EPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINCAENIKTPSVTVYLTEEYSQSQESAKV 1308

Query: 1143 VQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAP--EKISPWLL 1200
            +Q AL +TTL++VT A EV YDPDP  T+IEED +FV++++ +PDE++    E+ SPWLL
Sbjct: 1309 IQTALAHTTLQTVTSAVEVHYDPDPSATVIEEDKDFVEAFFAIPDEEVEASLERQSPWLL 1368

Query: 1201 RIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELN 1260
            R+EL+R  M+DK L+MA VA KI+  F  D+  + ++DNA++L+LRIR+++++  K    
Sbjct: 1369 RLELDRAQMLDKDLTMADVASKISAMFGQDIFVMHSEDNAEQLVLRIRVVDNDPEK---- 1424

Query: 1261 DESAEDDVFLKKIESNMLTEMALRGV---------------------------------- 1286
            +   E+++FLK + S ML E+ L+G+                                  
Sbjct: 1425 EAQGEEEIFLKNLASQMLAEIDLKGIKGIKKVYIVQQDNKTRRIDPVTGDWRTVSEWVLE 1484

Query: 1287 ----NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRH 1342
                NL  V+    VDA RT+ N+ +EI  V GIEA R +LL E R VI FDGSYVNYRH
Sbjct: 1485 TDGSNLAEVLAVHGVDAIRTSCNNPVEIFRVFGIEAARNSLLKETRAVIEFDGSYVNYRH 1544

Query: 1343 LAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTEN 1402
            LA+LCD MT +G LMAITRHGINR + G +MRC+FEETV++L++AA   + D  +GV +N
Sbjct: 1545 LALLCDIMTSQGALMAITRHGINRTNQGALMRCTFEETVELLIEAASMGDIDDCKGVAQN 1604

Query: 1403 IMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMS 1462
            ++LGQ+AP+GTG   L L+ +MLK+ I      Y   L           S +  H G  +
Sbjct: 1605 VLLGQMAPMGTGAFDLNLDLDMLKDTIVNHALPYDTLL----------ASRSLDHAGGKT 1654

Query: 1463 PGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPG----------YSPSSPGYSPSSPGY 1512
            PG + +P    SP +D  F  +   M FSP +  G           +  SP  +P     
Sbjct: 1655 PGAM-TPYDSSSPASDDAFRVHEQAM-FSPLAQTGGDEGGYNDYLLAGQSPMRTPLG-AQ 1711

Query: 1513 SPTSPGYSPTSPGYSPTSPGYSPTSPT-----YSP--SSPGYSPTSPAYSPTSPSY---- 1561
            SP   G+SP SPGY PTSPGY+ TSP       SP   + G   TSPAYSPTSP      
Sbjct: 1712 SPAGYGFSPVSPGYMPTSPGYA-TSPAGALGGMSPWTGNNGLGGTSPAYSPTSPRIFGGA 1770

Query: 1562 -----SPTSPSYSPTSPSYSPTSPS---YSPTSPSYSPTSPSY---SPTSPSYSPTSPAY 1610
                 SPTSPSYSP SP+YSP+SP+   YSPTSP  SPTSP     + TSP YSP SP +
Sbjct: 1771 TSPSYSPTSPSYSPASPNYSPSSPAGAGYSPTSPRMSPTSPMGRYGAATSPQYSPASPKF 1830

Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPAYSP 1668
            SPTSP YSP SPAY+PTSP YSPTSP+ +       +SP SP+YSPTSP YSP SPA+SP
Sbjct: 1831 SPTSPNYSPASPAYTPTSPVYSPTSPAMAGRGGVKGFSPASPAYSPTSPQYSPASPAFSP 1890

Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSP 1692
            TSP YSP SP YSPTSP YSPTSP
Sbjct: 1891 TSPQYSPASPQYSPTSPQYSPTSP 1914



 Score =  128 bits (322), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 101/211 (47%), Positives = 127/211 (60%), Gaps = 35/211 (16%)

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1666
            SP  +P   A SP    +SP SP Y PTSP Y+ TSP+ +    S    +     TSPAY
Sbjct: 1702 SPMRTPLG-AQSPAGYGFSPVSPGYMPTSPGYA-TSPAGALGGMSPWTGNNGLGGTSPAY 1759

Query: 1667 SPTSP---------GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
            SPTSP          YSPTSPSYSP SP YSP+SP+             YSP+SPR+SP 
Sbjct: 1760 SPTSPRIFGGATSPSYSPTSPSYSPASPNYSPSSPA----------GAGYSPTSPRMSPT 1809

Query: 1718 SP-----------YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAG-GGNPDYSP 1765
            SP           YSP SP +SPTS +YSP SP+Y+P+SP YSP+SP  AG GG   +SP
Sbjct: 1810 SPMGRYGAATSPQYSPASPKFSPTSPNYSPASPAYTPTSPVYSPTSPAMAGRGGVKGFSP 1869

Query: 1766 SSPQYSPSA-GYSPSAPGYSPSSTSQYTPQT 1795
            +SP YSP++  YSP++P +SP+S  QY+P +
Sbjct: 1870 ASPAYSPTSPQYSPASPAFSPTS-PQYSPAS 1899


>gi|156380969|ref|XP_001632039.1| predicted protein [Nematostella vectensis]
 gi|156219089|gb|EDO39976.1| predicted protein [Nematostella vectensis]
          Length = 1929

 Score = 1717 bits (4446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 915/1631 (56%), Positives = 1139/1631 (69%), Gaps = 122/1631 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ---IEHGETTERGKPKPGGLSDPRLGTIDRKM 64
            SPA +  V+ VQFGILSPDEI+QMSV     +++ ET E G+PK  GL DPR GTIDR  
Sbjct: 7    SPAPLRDVKRVQFGILSPDEIKQMSVTTDGGVKYSETMEGGRPKLNGLMDPRQGTIDRFS 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            +C+TC  NM ECPGHFGH+ELAKP+FH+GFM  ++  +R VCF CSK+L D ++ + K+ 
Sbjct: 67   RCQTCAGNMTECPGHFGHIELAKPVFHVGFMTKIVKTLRCVCFYCSKLLVDLNNPRVKEI 126

Query: 125  LKIRN--PKNRLKKILDACKNKTKCEGGDEID--VPGQDGEEPLKK------------NK 168
            L   +  P+ R+  + D CK K  CEGGDE+D  V  QD     +K            N 
Sbjct: 127  LSKSHGQPRKRMMHMYDLCKGKNICEGGDEVDAGVLAQDNPNEAEKKLVRIYLPNAYCNH 186

Query: 169  GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDED 228
            GGCG  QPK     +++ AE+K     N+D        E+K TLTAERV  + KRISDE+
Sbjct: 187  GGCGRYQPKFRKTALELTAEWK---HVNEDAN------EKKITLTAERVYEIFKRISDEE 237

Query: 229  CQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRR 278
            C  LG++PK ARPDWMI+ VLP+PP PVRPS          DDLTH+LA I++ N NLRR
Sbjct: 238  CNALGMDPKNARPDWMIVTVLPVPPLPVRPSIVLSGTARSQDDLTHKLADIVKANNNLRR 297

Query: 279  QERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRG 338
             E NGA AHII+E  +LLQ+H+AT  DNE+PG PRA Q+SGRP+KS+  RLK+KEGRIRG
Sbjct: 298  NELNGAAAHIIAEDTRLLQYHVATLTDNEIPGLPRAMQKSGRPLKSVKQRLKSKEGRIRG 357

Query: 339  NLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHP 398
            NLMGKRVDFSAR VITPDP ++IDQ+GVP +IA NLT+PE VTP+NI+ ++ELV  G + 
Sbjct: 358  NLMGKRVDFSARAVITPDPNLSIDQVGVPRTIAQNLTFPEIVTPFNIDSMQELVRRGNNQ 417

Query: 399  PPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSI 458
             PG   AKYIIRD+G+R+DLR+  K SD HL+ GYKVERH+ D D ++FNRQP+LHKMS+
Sbjct: 418  YPG---AKYIIRDNGERVDLRFHPKPSDLHLQFGYKVERHIRDNDVIIFNRQPTLHKMSM 474

Query: 459  MGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 518
            MGHR+KI+P+STFRLNLSVT+PYNADFDGDEMN+HVPQS E++AE+ E+MMVP+ IV+PQ
Sbjct: 475  MGHRVKILPWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLESKAEITEIMMVPRNIVTPQ 534

Query: 519  SNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGK 578
            SN+PVMGIVQD+L   RK TKRD FIEKD  MN+LMW   +DGK+PQP ILKPRPLWTGK
Sbjct: 535  SNKPVMGIVQDSLTAVRKFTKRDVFIEKDAMMNLLMWIPTWDGKIPQPAILKPRPLWTGK 594

Query: 579  QVFNLIIPKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTST 634
            Q+ ++IIP  +N+ RT + H D+ D G    ++ GDT  RI         LCKK+LGTS+
Sbjct: 595  QICSMIIPGNVNVIRTHSTHPDDEDSGPYKHISPGDTKARI---------LCKKSLGTSS 645

Query: 635  GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKA 694
            GSLIH+I  E+G D AR F    Q +VN WLL    SIGIGD IAD+ T + I     KA
Sbjct: 646  GSLIHIIAMELGHDIARMFYSDVQCVVNNWLLLEGHSIGIGDCIADSDTYDEIQRATKKA 705

Query: 695  KNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAM 754
            K  V  +I++A +  LEP PG T+ ++FEN+VN++LN  RD+ G SAQKSLSE NN KAM
Sbjct: 706  KKEVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDCRDKTGGSAQKSLSEFNNFKAM 765

Query: 755  VTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLR 814
            V AGSKGS INISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL 
Sbjct: 766  VVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLA 825

Query: 815  GLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQF 874
            GLTP EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAME + V YDGTVRNS   +IQ 
Sbjct: 826  GLTPTEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEGLSVAYDGTVRNSNNQLIQL 885

Query: 875  LYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELR 934
             YGEDGMD + IE Q + +++  K+ F++ F F+   + W   Y+ ++ + DL       
Sbjct: 886  RYGEDGMDGIAIEFQNMPTMRPSKTAFERKFHFDPTNDRWMTRYLQEDLVRDLSGSATAL 945

Query: 935  DVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPME 994
               + E  KL+ DR ++  +I  SG++   LPVNL RLIWNAQKTF +  R  SD+HP+ 
Sbjct: 946  QELEGEFNKLQEDR-EILRKIQPSGNARVALPVNLSRLIWNAQKTFHITNRSASDLHPLR 1004

Query: 995  VVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWV 1054
            V+E V +L ++L +V GED +S +AQ NATL FNILLRST  +KRV +E  L+ EAFEW+
Sbjct: 1005 VIEGVRELSKKLVIVAGEDHISKQAQFNATLLFNILLRSTLCTKRVAEEFHLSSEAFEWL 1064

Query: 1055 IGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII 1114
            +GEIE+RF  S V PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EII
Sbjct: 1065 LGEIETRFNHSHVKPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEII 1124

Query: 1115 NVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEE 1174
            NV+KK KTPSL+VFL        E AK V C LE+TTLR VT  T ++YDPDP  T+I E
Sbjct: 1125 NVSKKPKTPSLTVFLIGQAARDAEMAKAVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAE 1184

Query: 1175 DVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCI 1234
            D +FV  YYEMPD D+A  +ISPWLLRIEL+R+ M DKKL+M  ++EKIN  F DDL CI
Sbjct: 1185 DQDFVNVYYEMPDFDVA--RISPWLLRIELDRKRMTDKKLTMEQISEKINLGFGDDLNCI 1242

Query: 1235 FNDDNADKLILRIRIMNDEAPKGE--LNDESAEDDVFLKKIESNMLTEMALR-------- 1284
            FNDDNA+KL+LRIRIMN++  K +   + +  +DDVFL+ IE+NMLT+M L+        
Sbjct: 1243 FNDDNAEKLVLRIRIMNNDDGKMQDDEDVDKMDDDVFLRCIEANMLTDMTLQGIESISKV 1302

Query: 1285 --------------------------------GVNLLAVMCHEDVDARRTTSNHLIEIIE 1312
                                            GV+L+ V+   DVD  RTTSN + EI  
Sbjct: 1303 YMNLPHEDKKKRIVVTEQGEFKAIQEWLLETDGVSLMRVLSERDVDPVRTTSNDICEIFS 1362

Query: 1313 VLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPM 1372
            VLGIEAVR+A+  E+  VISFDGSYVNYRHLA+LCD MT RGHLMAITRHGINR + G +
Sbjct: 1363 VLGIEAVRKAVEREMDHVISFDGSYVNYRHLALLCDIMTCRGHLMAITRHGINRQEVGAL 1422

Query: 1373 MRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQ 1432
            MR SFEETVD+L+DAA  AE+DYLRGV+E I++G+L  IGTG   L L+ E  K+ +E  
Sbjct: 1423 MRSSFEETVDVLMDAAAHAETDYLRGVSECIIMGKLPRIGTGSFDLMLDAEKCKHGME-- 1480

Query: 1433 LPSYMEGLEFGMTPARSPV----SGTPYHDGMMSPGYLFSP-NLRLSPVTDAQFSPYVG- 1486
            +P+ + G   G   A   V    +G+P     MSP    +P N+  +P     +SP +G 
Sbjct: 1481 IPTNIMGPGMGGAMAAIGVFFGAAGSP---SAMSPQ--MTPWNMGATPAYMEAWSPGMGS 1535

Query: 1487 GMAFSPTSSPGYSPSSPGYSPSSPGYSPT--SPGYSPTSPGYSPTSPG-YSPTSPTYSPS 1543
            GM      +PG +  SP  +  + G SP   SP +   +PG SP SPG  SP  P+ + +
Sbjct: 1536 GM------TPGAASFSPSAASDASGMSPGGFSPSWMSPTPG-SPVSPGPTSPYIPSPAAA 1588

Query: 1544 SPGYSPTSPAY 1554
            SPGYSP+SPA+
Sbjct: 1589 SPGYSPSSPAF 1599



 Score = 72.0 bits (175), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/108 (50%), Positives = 62/108 (57%), Gaps = 35/108 (32%)

Query: 1596 YSPTSPSYSPTSPAYSPTSP-----------------------------------AYSPT 1620
            YSP SPSYSPTSP YSPTSP                                   +YSP+
Sbjct: 1791 YSPASPSYSPTSPKYSPTSPNYSPASPSYSPSSPKYSPTSPSYTPASPSYSPASPSYSPS 1850

Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
            SP+YSP+SP Y+PTSP YSPTSP YSP SP+YSPT+PSY+P S    P
Sbjct: 1851 SPSYSPSSPRYTPTSPQYSPTSPKYSPASPNYSPTTPSYTPMSGHIVP 1898


>gi|324120550|dbj|BAJ78666.1| RNA polymerase II largest subunit [Tenodera aridifolia]
          Length = 1844

 Score = 1717 bits (4446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 888/1643 (54%), Positives = 1141/1643 (69%), Gaps = 105/1643 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGIL+PDEIR+MSV +  I   ET E G+PK GGL DPR G +DR  +
Sbjct: 6    SKATLRCVKRVQFGILAPDEIRRMSVTEGGIRFSETYEGGRPKLGGLMDPRQGVMDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+ +
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNPKIKEVV 125

Query: 126  KIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQD-----GEEPLKKNKGGCGAQQPKL 178
                  P+ RL  + D CK K  CEGGDE+D+  ++      ++P K   GGCG  QP +
Sbjct: 126  MKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIMKENPDDPNQQQPRKAGHGGCGRYQPNI 185

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
               G+ + AE+K     N+D +      E+K  L+AERV  +LK I+DE+C +LG++PK+
Sbjct: 186  RRAGLDLTAEWK---HVNEDSQ------EKKIALSAERVWEILKHITDEECYILGMDPKF 236

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARPDWMI+ VLP+PP  VRP+          DDLTH+LA II+ N  L R E+ GA AH+
Sbjct: 237  ARPDWMIVTVLPVPPLAVRPAVVMYGSARNQDDLTHKLADIIKANNELMRNEQAGAAAHV 296

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            I E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFS
Sbjct: 297  ILENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFS 356

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVITPDP + IDQ+GVP SIA N+T+PE VTP+NI+++ ELV  G    PG   AKYI
Sbjct: 357  ARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMYELVRRGNSQYPG---AKYI 413

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            +RD+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+
Sbjct: 414  VRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPW 473

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQ
Sbjct: 474  STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQ 533

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL   RK+TKRD F+EK+  MN+LM+   +DGK+PQP I+KP+PLWTGKQVF+LIIP  
Sbjct: 534  DTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAIMKPKPLWTGKQVFSLIIPGN 593

Query: 589  INLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
            +N+ RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E
Sbjct: 594  VNMIRTHSTHPDEEDDGPFKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLE 653

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
            +G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++
Sbjct: 654  LGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQK 713

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS I
Sbjct: 714  AHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNI 773

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFH
Sbjct: 774  NISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFH 833

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+   
Sbjct: 834  AMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGE 893

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
             +E Q+L ++K+    F+K F+F+   E +      ++ + +L    ++    + E ++L
Sbjct: 894  TVEFQSLPTIKLSNKAFEKKFKFDPTNERYLRRIFNEDVLKELMGSGDVISELEREWEQL 953

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
              DR  L  +I  SG+    LP NL+R+IWN QK F ++ R P+D+ P+ V+  V  L +
Sbjct: 954  VRDREAL-RQIFPSGERQVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIHGVTDLLK 1012

Query: 1005 RLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
            +  +V G+D LS +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q
Sbjct: 1013 KCIIVAGDDHLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQ 1072

Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS 1124
            +  +PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PS
Sbjct: 1073 AQCSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPS 1132

Query: 1125 LSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
            L+VFL        E+AKNV C LE+TTL+ VT  T ++YDPDP  T+I ED EFV  YYE
Sbjct: 1133 LTVFLTGAAARDAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVIAEDQEFVNVYYE 1192

Query: 1185 MPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            MPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+
Sbjct: 1193 MPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLV 1250

Query: 1245 LRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV--------------- 1286
            LRIRIMN +  K +  +E+    EDD+FL+ IE+NML++M L+G+               
Sbjct: 1251 LRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDS 1310

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     +++ V+   DVD  RT SN + EI  VLGIEAVR+
Sbjct: 1311 KKRIIITETGEFKAIAEWLLETDGTSMMKVLSERDVDTNRTFSNDICEIFSVLGIEAVRK 1370

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1371 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1430

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLE 1441
            D+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  IE+ +      + 
Sbjct: 1431 DVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMSVGAGMMG 1490

Query: 1442 F-------GMTPARSPVSGTPYHDGMMSPGY-LFSPNLRLSPVTDAQFSPYVGGMAFSPT 1493
                      TP+ SP S TP++ G  +PGY ++SP   L     +  +P  GG +FSP+
Sbjct: 1491 GVGMFFGSAATPSMSPQS-TPWNQG-ATPGYSMWSPGNMLG----SGATP--GGPSFSPS 1542

Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTS--PTYSPSSPGYSPTS 1551
            ++   S  SPGYSP SP     S      SP Y P     SPTS        S      S
Sbjct: 1543 AASDASGLSPGYSPWSPTPGSPSSPGPAMSP-YIP-----SPTSGMSPSYSPSSPAYAPS 1596

Query: 1552 PAYSPTSPSYSPTSPSYSPTSPS 1574
            P+ +P+SP+YSPTSPSYSPTSP+
Sbjct: 1597 PSLTPSSPNYSPTSPSYSPTSPN 1619


>gi|324120530|dbj|BAJ78656.1| RNA polymerase II largest subunit [Aposthonia japonica]
          Length = 1697

 Score = 1715 bits (4441), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 894/1635 (54%), Positives = 1138/1635 (69%), Gaps = 112/1635 (6%)

Query: 23   LSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHF 80
            +SPDEIR+MSV +  I   ET E G+PK GGL DPR G IDR  +C+TC  N  ECPGHF
Sbjct: 1    ISPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGNQTECPGHF 60

Query: 81   GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-ALKIR-NPKNRLKKIL 138
            GH++LAKP+FHIGF+   + I+R VCF CSK+L      K K+  +K +  P+ RL  + 
Sbjct: 61   GHIDLAKPVFHIGFLTKTIKILRCVCFYCSKLLVSPTHPKIKEIVMKSKGQPRKRLTFVY 120

Query: 139  DACKNKTKCEGGDEIDVPGQ--DGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
            D CK K  CEGGDE+D+  +  D ++P K   GGCG  QP +   G+ + AE+K     N
Sbjct: 121  DLCKGKNICEGGDEMDINKENIDDQQPRKAGHGGCGRYQPNIRRAGLDLTAEWK---HVN 177

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            +D +      E+K  L+AERV  +LK I+DE+C +LG++PK+ARPDWMI+ VLP+PP  V
Sbjct: 178  EDSQ------EKKINLSAERVWEILKHITDEECFILGMDPKFARPDWMIVTVLPVPPLSV 231

Query: 257  RPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
            RP+          DDLTH+L+ II+ N  L R E+ GA AH+I+E  ++LQFH+AT  DN
Sbjct: 232  RPAVVMYGSARNQDDLTHKLSDIIKSNNELVRNEQAGAAAHVIAENIKMLQFHVATLVDN 291

Query: 307  ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
            ++PG PRA Q+SG+P+K+I SRLK KEGRIRGNLMGKRVDFSARTVITPDP + IDQ+GV
Sbjct: 292  DMPGLPRAMQKSGKPLKAIKSRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVGV 351

Query: 367  PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
            P SIA NLT+PE VTP+NI++++ELV  G    PG   AKYI+RD+G+R+DLR+  KSSD
Sbjct: 352  PRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPG---AKYIVRDNGERIDLRFHPKSSD 408

Query: 427  HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 486
             HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+STFR+NLS TSPYNADFD
Sbjct: 409  LHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFD 468

Query: 487  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
            GDEMN+HVPQS ETRAEV  L + P+ I++PQ+N+PVMGIVQDTL+  RK+TKRD F+EK
Sbjct: 469  GDEMNLHVPQSMETRAEVENLHVTPRQIITPQANQPVMGIVQDTLVAVRKMTKRDVFLEK 528

Query: 547  DVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKG- 604
            +  MNILM+   +DGK+PQP ILKP+PLWTGKQVF+LIIP  +NL RT + H D+ D+G 
Sbjct: 529  EQMMNILMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNLIRTHSTHPDDEDEGP 588

Query: 605  --ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
               ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+G D   +F G+ Q ++N
Sbjct: 589  YKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLELGHDVCGQFYGNIQTVIN 648

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
             WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A +  LEP PG T+ ++F
Sbjct: 649  NWLLYEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTF 708

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            EN+VN++LN ARD+ G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGKR
Sbjct: 709  ENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKR 768

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ET
Sbjct: 769  IPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAET 828

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E Q + ++K+    F+
Sbjct: 829  GYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQYIQTVKLSNKAFE 888

Query: 903  KAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSS 962
            + F+F+   E        ++ + +L    E+    + E ++L  DR  L  +I   G++ 
Sbjct: 889  RRFKFDPTNERHLRRIFNEDVLRELMGSGEVIQELEKEWEQLSKDRDAL-RQIFPGGENK 947

Query: 963  WPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKN 1022
              LP NL R+IWN QK F ++   P+D+ P+ V++ V  L ++  +V GED LS +A +N
Sbjct: 948  VVLPCNLTRMIWNVQKIFHINKHAPTDLSPLRVIQGVSDLLKKCVIVDGEDRLSKQANEN 1007

Query: 1023 ATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIG 1082
            ATL F  L+RST  +K V ++ RL+ EAFEW+IGEIE+RF Q+   PGEM+G +AAQS+G
Sbjct: 1008 ATLLFQCLVRSTLCTKCVSEDFRLSSEAFEWLIGEIETRFQQAQCNPGEMVGALAAQSLG 1067

Query: 1083 EPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKN 1142
            EPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K PSL+VFL        E+AKN
Sbjct: 1068 EPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKAPSLTVFLTGAAARDAEKAKN 1127

Query: 1143 VQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRI 1202
            V C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD D  P +ISPWLLRI
Sbjct: 1128 VLCRLEHTTLRKVTANTAIYYDPDPQNTVITEDQEFVNVYYEMPDFD--PTRISPWLLRI 1185

Query: 1203 ELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDE 1262
            EL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIMN +  K +  +E
Sbjct: 1186 ELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQDEEE 1245

Query: 1263 SA---EDDVFLKKIESNMLTEMALRGVNLLA----------------------------- 1290
            +    EDD+FL+ IE+NML++M L+G+  +A                             
Sbjct: 1246 TVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDAKKRIIITDNGEFKAIAEW 1305

Query: 1291 -----------VMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVN 1339
                       V+   DVD  RT SN + EI  VLGIEAVR+++  E+  V+SF G YVN
Sbjct: 1306 LLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLSFYGLYVN 1365

Query: 1340 YRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGV 1399
            YRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA  AE D +RGV
Sbjct: 1366 YRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMRGV 1425

Query: 1400 TENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGM-------TPARSPV- 1451
            +ENI++GQL  +GTG   L L+ E  K  IE+ +      +           TP+ SP  
Sbjct: 1426 SENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMSVGAGMMGGAGMFFGSAGTPSMSPQL 1485

Query: 1452 -----SGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYS 1506
                   TP +  M SPG +    +          +P  GG +FSP+ +   S  SPGYS
Sbjct: 1486 TPWPQGSTPSYSSMWSPGNVLGSGM----------TP--GGPSFSPSGASDASGLSPGYS 1533

Query: 1507 PSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSP 1566
            P SP     S      SP Y P SP  S  SP+YSPSSP Y+P+SPA      S +P+SP
Sbjct: 1534 PWSPTPGSPSSPGPAMSP-YIP-SP-VSGMSPSYSPSSPMYAPSSPA------SLTPSSP 1584

Query: 1567 SYSPTSPSYSPTSPS 1581
            +YSPTSPSYSPTSP+
Sbjct: 1585 NYSPTSPSYSPTSPN 1599



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 65/128 (50%), Gaps = 6/128 (4%)

Query: 1555 SPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPAYSP 1612
            S  +PS SP  +P    ++PSYS      +      +P  PS+SP+  S  S  SP YSP
Sbjct: 1475 SAGTPSMSPQLTPWPQGSTPSYSSMWSPGNVLGSGMTPGGPSFSPSGASDASGLSPGYSP 1534

Query: 1613 TSPAYSPTSPAYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
             SP     S      SP   SP S      SPS    +PS SP S   +P+SP YSPTSP
Sbjct: 1535 WSPTPGSPSSPGPAMSPYIPSPVSGMSPSYSPSSPMYAPS-SPAS--LTPSSPNYSPTSP 1591

Query: 1672 GYSPTSPS 1679
             YSPTSP+
Sbjct: 1592 SYSPTSPN 1599



 Score = 42.7 bits (99), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 67/140 (47%), Gaps = 18/140 (12%)

Query: 1590 SPTSPSYSPT-SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS-YSPTSPSYSP 1647
            S  +PS SP  +P    ++P+YS      +      +P  PS+SP+  S  S  SP YSP
Sbjct: 1475 SAGTPSMSPQLTPWPQGSTPSYSSMWSPGNVLGSGMTPGGPSFSPSGASDASGLSPGYSP 1534

Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY 1707
             SP+    S      SP Y P     SP S      SP+    +PS        SP+ + 
Sbjct: 1535 WSPTPGSPSSPGPAMSP-YIP-----SPVSGMSPSYSPSSPMYAPS--------SPA-SL 1579

Query: 1708 SPSSPRLSPASP-YSPTSPN 1726
            +PSSP  SP SP YSPTSPN
Sbjct: 1580 TPSSPNYSPTSPSYSPTSPN 1599


>gi|119494984|ref|XP_001264289.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Neosartorya fischeri NRRL 181]
 gi|119412451|gb|EAW22392.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Neosartorya fischeri NRRL 181]
          Length = 1750

 Score = 1712 bits (4435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 924/1764 (52%), Positives = 1203/1764 (68%), Gaps = 122/1764 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            FPYS A +  ++ +QFG+ SP+EI++MSVV +E+ ET   +R +P+  GL+DPRLGTIDR
Sbjct: 6    FPYSKAPLRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDEQRMRPRTKGLNDPRLGTIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            +  CETC     ECPGHFGH+ELA P+FHIGF+  V  ++ +VC NC KI AD  D KF 
Sbjct: 66   QWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCGKIKADTSDSKFL 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGG---DEIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
            +AL++R+PK R   I    K+   CE     DE +   ++  +PL+++ GGCG  QP + 
Sbjct: 126  EALRMRDPKRRFDHIWRLSKDVLICEADPPPDEDEPFSKESSKPLRRH-GGCGNAQPTIR 184

Query: 180  IEGMKMIAEYKAQRKKNDDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
             EG+ ++  +K  +   D+ E Q PE    K+ +T +  L V + IS ED +++GL+  Y
Sbjct: 185  KEGITLVGTWKPNKSMMDEDEMQQPE----KKVITPQMALNVFRNISHEDVRIMGLSNDY 240

Query: 239  ARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+WMI+ VLP+PPPPV             R  DDLT++LA IIR N+N++R E+ GAP
Sbjct: 241  ARPEWMIITVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIIRANQNVQRCEQEGAP 300

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             H++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I SRLK KEGR+R NLMGKRV
Sbjct: 301  EHVVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRV 360

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT DP +++D++GVP SIA  LTYPE VTPYNIE+L++LV  GP+  PG   A
Sbjct: 361  DFSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANGPNEHPG---A 417

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            +YI+RD+G+R+DLR+ +++    L  G+KVERHL DGD +LFNRQPSLHK S+MGHR+++
Sbjct: 418  RYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDIILFNRQPSLHKESMMGHRVRV 477

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E+RAE+ +L +VP  IVSPQ N P+MG
Sbjct: 478  MPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKQLALVPLNIVSPQRNGPLMG 537

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDTL G  KI +RD F+ K+  MNI++W  D+DG +P P ILKPRP WTGKQ+ ++ +
Sbjct: 538  IVQDTLCGIYKICRRDVFLSKEQVMNIMLWVPDWDGVIPPPAILKPRPRWTGKQMISMAL 597

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            P  +NL R    ++   +      D  + I  G+L+ G   KKT+G S G +IH I+ E 
Sbjct: 598  PSGLNLLRVEKDNSSLAEKFSPLTDGGLLIHGGQLMYGMFSKKTVGASGGGVIHTIFNEY 657

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GPD A  F    Q +VNYWLL N FSIGIGDTI DA T++ I + + + K  V+ +   A
Sbjct: 658  GPDTAVAFFNGAQTIVNYWLLHNGFSIGIGDTIPDAITIQRIENCVRERKKEVEAITASA 717

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             + +LEP PG  + E+FE+KV++ LN ARDEAGS  +KSL + NN   M  +GSKGS IN
Sbjct: 718  TENTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTIN 777

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHA
Sbjct: 778  ISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHA 837

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGDVIQF+YGEDG+D   
Sbjct: 838  MAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQFIYGEDGLDGAH 897

Query: 886  IESQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE+Q +D ++    +F + FR + MD E +  P  +  E  +++    E++   D E ++
Sbjct: 898  IENQRVDIIRCSDEKFRERFRVDLMDPERSLGPEVL--EQANEIAGDVEVQRYLDEEWEQ 955

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            L  DR  L T +A   D    LP+N++R++  A+ TF++     SD+HP EV+  V  L 
Sbjct: 956  LLKDRAFLRT-VAKEDDEMMQLPINVQRILETARSTFRIREGAISDLHPAEVIPQVRSLL 1014

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
            +RL VV G+DP+S EAQ+NATL F   LRS  A +R++ E+ + + AF+ VIG IESRF 
Sbjct: 1015 DRLLVVRGDDPISREAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAIESRFA 1074

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            ++   PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA  IKTP
Sbjct: 1075 KAGANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTP 1134

Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
            S++V+  P     KE AK ++  +E+T+LRSVTEATE++YDPD   T+IE D + V+SY+
Sbjct: 1135 SMTVYQLPHKCHDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQTTVIENDRDMVESYF 1194

Query: 1184 EMPDEDI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
             +P ED+  A  + S WLLRI L+R  ++DK L++  VA KI Q +  D+  IF+D+NAD
Sbjct: 1195 IIP-EDVTDASSRQSKWLLRIILSRPKLLDKGLTVQDVAAKIKQAYPKDIAVIFSDNNAD 1253

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            + ++RIR +  +  K + +DE  E DV LKK+E ++L  + LRGV               
Sbjct: 1254 EQVIRIRQI--QDYKEDEDDEDIEYDVTLKKLEQHLLDTLTLRGVQGVERAFINEKSKVR 1311

Query: 1287 -----NLLAV----MCHE-----------------DVDARRTTSNHLIEIIEVLGIEAVR 1320
                 +L A     +C E                  VDA RT SN  IE+ EV GIEA R
Sbjct: 1312 VLEDGSLFASKTDPLCKEWVLETSGSSLGEVLAVPGVDATRTYSNQFIEVFEVFGIEAAR 1371

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             A+L EL  V++FDGSYVN+RHLA+L D MT RG+L  +TRHGINR D G +MRCSFEET
Sbjct: 1372 TAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEET 1431

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA F E D  RGV+EN++LGQ+AP GTG+  LYL+  +L   +       + G 
Sbjct: 1432 VEILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDLYLDQNLLSTVVSNNARFGVMGT 1491

Query: 1441 EFGMTPARSPVSGTPYHDG--MMSPGYLFSPN--LRLSPVTDA---------QFSPYVG- 1486
                    S  + T Y  G  M    Y+ +P+     SP+  A         ++ P  G 
Sbjct: 1492 IGAKDAIISDGAATQYDTGSPMQESAYIGTPDPESAFSPIRQAGAESPGGFTEYQPTGGF 1551

Query: 1487 GMAFSP--TSSPGYSPSSP-GYSPSSPGYSPTSP------GYSPTSPGYSPTSPGYSPTS 1537
            G  FSP  TS  GYSPSSP   +P+SPGYSPTS       G   TSP +  TSPG+SP S
Sbjct: 1552 GGGFSPAATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSPRFM-TSPGFSPAS 1610

Query: 1538 PTYSPSSPGYSPTSPAY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
            P+++P+SP YSPTSPAY   SPTSPSYSPTSP +SPTSP+YSPTSPS+SP SP++SPTSP
Sbjct: 1611 PSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSP 1670

Query: 1595 SYSPTSPSY----------SPTSPAYSPTSPAYSPTSP-AYSPTSPSY--SPTSPSYSPT 1641
            SYSPTSP+           SPTSP Y+PTSP +SPTSP  YSPTSP++  SPTSP   PT
Sbjct: 1671 SYSPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPG-GPT 1729

Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPA 1665
            SP YSPTSP++SP   SY P+S A
Sbjct: 1730 SPGYSPTSPAFSP---SYVPSSSA 1750



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/212 (51%), Positives = 134/212 (63%), Gaps = 34/212 (16%)

Query: 1596 YSPTSPSYSPTSPAYSPTSPA-YSPTSP-AYSPTSPSYSP-------------TSPSYSP 1640
            Y PT       SPA   TSPA YSP+SP + +PTSP YSP             TSP +  
Sbjct: 1545 YQPTGGFGGGFSPA--ATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSPRFM- 1601

Query: 1641 TSPSYSPTSPSYSPTSPSYSPTSPAY---SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
            TSP +SP SPS++PTSP+YSPTSPAY   SPTSP YSPTSP +SPTSP YSPTSPS++P 
Sbjct: 1602 TSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPA 1661

Query: 1698 SAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNA 1756
            S       A+SP+SP  SP SP       + SPTS    PTSP Y+P+SP +SP+SP   
Sbjct: 1662 SP------AFSPTSPSYSPTSPAIGGAGRHLSPTS----PTSPKYTPTSPGWSPTSPQTY 1711

Query: 1757 GGGNPDY--SPSSPQYSPSAGYSPSAPGYSPS 1786
               +P++  SP+SP    S GYSP++P +SPS
Sbjct: 1712 SPTSPNFAGSPTSPGGPTSPGYSPTSPAFSPS 1743



 Score =  134 bits (336), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 120/187 (64%), Gaps = 21/187 (11%)

Query: 1610 YSPTSPAYSPTSPAYSPTSPS-YSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
            Y PT       SPA   TSP+ YSP+SP S +PTSP YSPTS     +      TSP + 
Sbjct: 1545 YQPTGGFGGGFSPA--ATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSP-GMGITSPRFM 1601

Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPN 1726
             TSPG+SP SPS++PTSP YSPTSP+Y             SP+SP  SP SP +SPTSPN
Sbjct: 1602 -TSPGFSPASPSFAPTSPAYSPTSPAYG----------QASPTSPSYSPTSPGFSPTSPN 1650

Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPS 1786
            YSPTS S+SP SP++SP+SP+YSP+SP   G G    SP+SP    S  Y+P++PG+SP+
Sbjct: 1651 YSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAGR-HLSPTSPT---SPKYTPTSPGWSPT 1706

Query: 1787 STSQYTP 1793
            S   Y+P
Sbjct: 1707 SPQTYSP 1713


>gi|320166366|gb|EFW43265.1| polymerase II polypeptide A [Capsaspora owczarzaki ATCC 30864]
          Length = 1792

 Score = 1712 bits (4434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 875/1651 (52%), Positives = 1124/1651 (68%), Gaps = 123/1651 (7%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEI---------------RQMSVVQIEHGETTERGKP 47
            T   +S A V  +  VQFGILSPDEI               + MSV +IE  +  E G  
Sbjct: 2    TALAHSVAPVRDIERVQFGILSPDEILGFLMLPSTIVQNKQKAMSVAKIEFPDAMENGMQ 61

Query: 48   KPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCF 107
            K GGLSDPR+GT++R+ KC+TCT +M +CPGHFGH+EL KP+F++  M  +   ++SVC+
Sbjct: 62   KRGGLSDPRMGTVERQFKCQTCTGSMGDCPGHFGHIELVKPVFNVTMMTKIQKTLKSVCY 121

Query: 108  NCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKN 167
            +CS++L   +D  +K A +  N   R +++  AC  KT+C GG ++D   +   +   K 
Sbjct: 122  HCSRLLVSPEDMAYKHAQRTNNMSERFRRLSTACFGKTRCGGGTDVDADMKPSIDLTAKA 181

Query: 168  KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERK------QTLTAERVLGVL 221
            + GCG  QPK   +G+ +  E++    K D +                QTL+ E+   +L
Sbjct: 182  RTGCGNVQPKYKRDGLSLTYEFRLTGAKKDSESTAGGGSGGGALPTGTQTLSPEKAHEIL 241

Query: 222  KRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIR 271
            KRISDEDC+ LG NP+  RPDWMI+ VLP+PP  VRPS          DDLTH+LA II+
Sbjct: 242  KRISDEDCRALGFNPEQGRPDWMIITVLPVPPMTVRPSVVMDSVARGIDDLTHKLADIIK 301

Query: 272  HNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKA 331
             N NLR+QE  G+PAHI+ E+ +LLQ+H+ATY DNE+PG   A Q+SGRP+KSI  R+K 
Sbjct: 302  ANHNLRQQELRGSPAHIMEEYTKLLQYHVATYADNEIPGVATAQQKSGRPLKSIRQRMKG 361

Query: 332  KEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKEL 391
            KEGRIRGNLMGKRVDFSARTVIT DP +++D++GVP SIALNLT+PE VTPYNI+R+ EL
Sbjct: 362  KEGRIRGNLMGKRVDFSARTVITADPNLSLDEVGVPRSIALNLTFPEMVTPYNIDRMYEL 421

Query: 392  VEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK-KSSDHHLELGYKVERHLNDGDFVLFNRQ 450
            V  G    PG   AKY+IRDDG R+DLR+ + +  + HLE GY+VERH+ DGD V+FNRQ
Sbjct: 422  VRRGALEHPG---AKYVIRDDGTRIDLRFSRTQGQEIHLEPGYRVERHIVDGDPVIFNRQ 478

Query: 451  PSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 510
            PSLHKMS+MGHRI+++P+STFRLNLSVT+PYNADFDGDEMN+HVPQ+ ETRAEV E+M V
Sbjct: 479  PSLHKMSMMGHRIRVLPWSTFRLNLSVTTPYNADFDGDEMNLHVPQNLETRAEVTEIMSV 538

Query: 511  PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILK 570
             + I++P  NRPVMGIVQDTL G RK+TKRDTFIE D+ M +LMW   + G VPQP ILK
Sbjct: 539  SRQILTPAGNRPVMGIVQDTLTGSRKLTKRDTFIEMDLMMQLLMWLPGWTGHVPQPAILK 598

Query: 571  PRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLC 626
            PRP+WTGKQ+F++IIP ++NL RT + H D  DKG    ++  DT V IEKG LLSG +C
Sbjct: 599  PRPMWTGKQIFSMIIPAEVNLTRTHSTHDDEEDKGNYVHMSPSDTKVLIEKGRLLSGIIC 658

Query: 627  KKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMET 686
            KKTLG S G LIH++++E G + AR F    Q +VNYWL+    SIGIGD +AD  TM  
Sbjct: 659  KKTLGPSAGGLIHILFKEWGHEVARNFFNACQRVVNYWLMWEGHSIGIGDAVADDATMMQ 718

Query: 687  INDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLS 746
            + D I +AK +VK +++ AQ   LE  PG T+ E+FEN+VN+ LN AR++AG   Q SL 
Sbjct: 719  VEDAIRRAKEDVKKVVESAQHGRLESTPGNTLRETFENEVNKYLNNAREDAGKKVQDSLG 778

Query: 747  ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRG 806
            + NN + M  AGSKGS +NISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRG
Sbjct: 779  DFNNFRLMAVAGSKGSVLNISQVIACVGQQNVEGKRIPFGFRFRTLPHFVKDDYGPESRG 838

Query: 807  FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRN 866
            FVENSYL+GLTP EFFFHAMGGREG+IDTAVKTSETGYIQRRLVK MED+MVKYDGTVRN
Sbjct: 839  FVENSYLKGLTPSEFFFHAMGGREGVIDTAVKTSETGYIQRRLVKCMEDVMVKYDGTVRN 898

Query: 867  SLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDD 926
            SLGDVIQF+YGEDG+D   +E      L      F+  ++++    N     +  E  ++
Sbjct: 899  SLGDVIQFVYGEDGLDGAHLEFGNQPILAPNNDRFNSLYKYDDKTLNELSVRLTPEIYEN 958

Query: 927  LKTIKELRDVFDAEVQKLEADRYQLATEIAT-SGDSSWPLPVNLKRLIWNAQKTFKVDPR 985
            + T+ E++D  + E  +L  DR  L     T SG     +PVN+ RLIWNAQKTF +D R
Sbjct: 959  VMTV-EMQDALEREFNQLATDRTLLRALFPTGSGMLDAAVPVNVPRLIWNAQKTFNIDKR 1017

Query: 986  RPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHR 1045
              SD+HP+ V+E V +L E L +V G DP+SVEAQ NA   F I LRS   SKRVL EHR
Sbjct: 1018 HQSDLHPVAVIEGVRRLTENLVIVKGSDPISVEAQNNAICLFGIHLRSVLNSKRVLLEHR 1077

Query: 1046 LTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1105
            L  +AFEW++GEIESRF Q+ V PGEM+G +AAQS+GEPATQMTLNTFH+AGVSAKNVTL
Sbjct: 1078 LHSQAFEWLLGEIESRFQQAKVEPGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTL 1137

Query: 1106 GVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDP 1165
            GVPRLRE+INV+K  KTPSL+V+L+ G++  +ERAK+V C LE+TTL  +T  TE++YDP
Sbjct: 1138 GVPRLRELINVSKSPKTPSLTVYLQSGMD--QERAKDVACRLEHTTLLKITTHTEIYYDP 1195

Query: 1166 DPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQ 1225
            +P+ +++EED  FV  YYEMPD+    + ISPWLLR+EL+R+ M  ++L+M  VAEKI  
Sbjct: 1196 NPLASVVEEDQSFVNDYYEMPDDPEILKHISPWLLRMELDRKQMEYRRLTMERVAEKITA 1255

Query: 1226 EFDDDLTCIFNDDNADKLILRIRIM----------NDEAPKGELNDESAEDDVFLKKIES 1275
            +F +DL  IF+DDNADKLIL+IR++           D+ P+ EL   +A DD FL+K+  
Sbjct: 1256 DFGNDLHVIFSDDNADKLILQIRMLKKTSEGDGESGDKNPEDELRSGAA-DDTFLRKLIP 1314

Query: 1276 NMLTEMALRGV---------------------------------------NLLAVMCHED 1296
            N L  + L+G+                                       +LL  +   +
Sbjct: 1315 NYLWPLTLQGLEDIAKVYMTQKNRKHFHPVTGALVNDKNVKEWVLETDGSSLLLALSQPN 1374

Query: 1297 VDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1356
            VD  RT SN ++EI+ VLG+EAVR++L  E+  V S  G Y+NYRHLA+LCD MT RGH+
Sbjct: 1375 VDVTRTVSNDIVEIMRVLGVEAVRQSLFKEMHAVYSLYGIYINYRHLALLCDVMTARGHI 1434

Query: 1357 MAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDC 1416
            MA+TRHGIN  DTGP+MRCSFEETV+IL+ AA  +E+D+LRG +ENI+LGQLAP+GTG  
Sbjct: 1435 MAVTRHGINGLDTGPLMRCSFEETVEILVTAAQHSETDWLRGPSENIILGQLAPVGTGYF 1494

Query: 1417 SLYLNDEMLKNAIEL----QLPSYMEGL--EFGM---TPARSPVSGTPYHDGMMSPGY-L 1466
             L LN++ML++A+E+     + ++M+G+    G+   +   SP++ T YH    + GY +
Sbjct: 1495 DLLLNEKMLEHAVEMPQTFGVNAFMDGMFDPLGISSPSAGLSPMAVTQYH---TNEGYSV 1551

Query: 1467 FSP----NLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPT 1522
            +SP    N   SP  +A FSP  G  A SP +  G SP    Y+ SSP   P SP     
Sbjct: 1552 YSPNSPSNAAFSPAGNASFSPAYG--ALSPFNQSGRSPDP--YAASSPRRGPASP----- 1602

Query: 1523 SPGYSPTSPGYSPTSPTYSPSS-PGYSPTSP 1552
               Y   SP YSP    YSPSS  GYSPTSP
Sbjct: 1603 ---YHAASPSYSPGDTDYSPSSGKGYSPTSP 1630



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 58/110 (52%), Gaps = 11/110 (10%)

Query: 1525 GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSP----SYSPTSPSYSPTSP 1580
            G S  S G SP + T   ++ GYS     YSP SPS +  SP    S+SP   + SP + 
Sbjct: 1527 GISSPSAGLSPMAVTQYHTNEGYS----VYSPNSPSNAAFSPAGNASFSPAYGALSPFNQ 1582

Query: 1581 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS-PAYSPTSP 1629
            S     P Y+ +SP   P SP Y   SP+YSP    YSP+S   YSPTSP
Sbjct: 1583 SGRSPDP-YAASSPRRGPASP-YHAASPSYSPGDTDYSPSSGKGYSPTSP 1630



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 57/102 (55%), Gaps = 5/102 (4%)

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA-YSPTSPAYSPTSPSYSPTSPS 1637
            S   SP + +   T+  YS  SP+ SP++ A+SP   A +SP   A SP + S     P 
Sbjct: 1532 SAGLSPMAVTQYHTNEGYSVYSPN-SPSNAAFSPAGNASFSPAYGALSPFNQSGRSPDP- 1589

Query: 1638 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS-PGYSPTSP 1678
            Y+ +SP   P SP Y   SPSYSP    YSP+S  GYSPTSP
Sbjct: 1590 YAASSPRRGPASP-YHAASPSYSPGDTDYSPSSGKGYSPTSP 1630



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 57/108 (52%), Gaps = 9/108 (8%)

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPA 1665
            S   SP +     T+  YS  SP+ SP++ ++SP  + S+SP   + SP + S     P 
Sbjct: 1532 SAGLSPMAVTQYHTNEGYSVYSPN-SPSNAAFSPAGNASFSPAYGALSPFNQSGRSPDP- 1589

Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
            Y+ +SP   P SP Y   SP+YSP    Y+P S K      YSP+SPR
Sbjct: 1590 YAASSPRRGPASP-YHAASPSYSPGDTDYSPSSGK-----GYSPTSPR 1631



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 60/114 (52%), Gaps = 14/114 (12%)

Query: 1672 GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA--SPYSPTSPNYSP 1729
            G S  S   SP + T   T+  Y    + YSP+   SPS+   SPA  + +SP     SP
Sbjct: 1527 GISSPSAGLSPMAVTQYHTNEGY----SVYSPN---SPSNAAFSPAGNASFSPAYGALSP 1579

Query: 1730 TSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAP 1781
             + S     P Y+ SSP   P+SPY+A   +P YSP    YSPS+  GYSP++P
Sbjct: 1580 FNQSGRSPDP-YAASSPRRGPASPYHAA--SPSYSPGDTDYSPSSGKGYSPTSP 1630



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 12/105 (11%)

Query: 1702 SPSLAYSP-SSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGN 1760
            SPS   SP +  +      YS  SPN SP+++++SP   +    SP Y   SP+N  G +
Sbjct: 1530 SPSAGLSPMAVTQYHTNEGYSVYSPN-SPSNAAFSPAGNA--SFSPAYGALSPFNQSGRS 1586

Query: 1761 PD--------YSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNR 1797
            PD          P+SP ++ S  YSP    YSPSS   Y+P + R
Sbjct: 1587 PDPYAASSPRRGPASPYHAASPSYSPGDTDYSPSSGKGYSPTSPR 1631


>gi|324120560|dbj|BAJ78671.1| RNA polymerase II largest subunit [Cryptotympana facialis]
          Length = 1803

 Score = 1711 bits (4432), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 882/1641 (53%), Positives = 1134/1641 (69%), Gaps = 125/1641 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRSVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRHSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM+ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L      K K+  
Sbjct: 66   CQTCAGNMSECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPSHPKIKEIV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP----LKKNKGGCGAQQPKLT 179
            +K +  P+ RL  + D CK K  CEGGDE+D+  ++ E+P     K+  GGCG  QP L 
Sbjct: 126  MKTKGQPRKRLTFVYDLCKGKNICEGGDEMDLNKENIEDPNNPQRKQGHGGCGRYQPNLR 185

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
              G+ + AE+K     N+D +      E+K  L+AERV  + K I+DE+C +LG++PK+A
Sbjct: 186  RTGLDVTAEWK---HANEDSQ------EKKIALSAERVWEIFKHITDEECFILGMDPKFA 236

Query: 240  RPDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RPDWMI+ VLP+PP             R  DDLTH+L+ II+ N  L R E++GA  H+I
Sbjct: 237  RPDWMIVTVLPVPPLPVRPAVVMYGSARNQDDLTHKLSDIIKCNNELIRNEQSGAATHVI 296

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            +E  ++LQFH+AT  DN++PG PRA Q+SG+P+K++ +RLK KEGRIRGNLMGKRVDFSA
Sbjct: 297  AENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKALKARLKGKEGRIRGNLMGKRVDFSA 356

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVITPDP + IDQ+GVP SIA N+T+PE VTP+NI+++ ELV  G    PG   AKYI+
Sbjct: 357  RTVITPDPNLGIDQVGVPRSIAQNMTFPEIVTPFNIDKMLELVRRGNSQYPG---AKYIV 413

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+S
Sbjct: 414  RDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDLVIFNRQPTLHKMSMMGHRVKVLPWS 473

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQD
Sbjct: 474  TFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQD 533

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK+TKRD F+EK+  MN+LM    +DGK+PQP ILKP+PLWTGKQVF+LIIP  +
Sbjct: 534  TLTAVRKMTKRDVFLEKEQMMNLLMHLPIWDGKMPQPCILKPKPLWTGKQVFSLIIPGNV 593

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            N+ RT + H D+ D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+
Sbjct: 594  NMIRTHSTHPDDEDNGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFLEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A
Sbjct: 654  GHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS IN
Sbjct: 714  HNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHA
Sbjct: 774  ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    
Sbjct: 834  MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGET 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E Q + S+++   +F+  ++F+   E        ++ + +L    E+    + E ++L 
Sbjct: 894  VEFQKIASVELSNKKFESKYKFDASNERHLRRIFTEDILRELLGSGEVISELEKEWEQLS 953

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L  +I  SG+S   LP NLKR+IWN QK F ++ R P+D+ P+ V++ V +L ++
Sbjct: 954  RDREAL-RQIFPSGESKVVLPCNLKRMIWNVQKIFHINKRAPTDLSPLRVIQGVKELLQK 1012

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
              +V G+D LS +A +NATL F  L+RST  +K + +++RL+ EAFEW+ GEIE+RF Q+
Sbjct: 1013 CIIVAGDDHLSKQANENATLLFQCLVRSTLCTKLISEKYRLSSEAFEWLTGEIENRFQQA 1072

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
               PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL
Sbjct: 1073 QCQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSL 1132

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEM
Sbjct: 1133 TVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEM 1192

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PD D  P +ISPWLLRIEL+R+ M DKKL+M  ++EKIN  F DDL CIFNDDNA+KL+L
Sbjct: 1193 PDFD--PTRISPWLLRIELDRKRMTDKKLTMEQISEKINAGFGDDLNCIFNDDNAEKLVL 1250

Query: 1246 RIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV---------------- 1286
            RIRIMN +  K    +E+    EDD+FL+ IE+NML++M L+G+                
Sbjct: 1251 RIRIMNSDENKLTEEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSK 1310

Query: 1287 ------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                    +L+ V+   DVD  RT SN + EI  VLGIEAVR++
Sbjct: 1311 KRIIVTESGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKS 1370

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            +  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD
Sbjct: 1371 VEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1430

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEF 1442
            +L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  IE+ +   M  +  
Sbjct: 1431 VLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKAGIEIPMNMGMGMMGG 1490

Query: 1443 -------GMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMA----FS 1491
                     TP+ SP + TP++ G  +P Y  S          + +SP +GGM     FS
Sbjct: 1491 GGMFFGSAATPSMSPQT-TPWNQG-ATPSYPGS----------SSWSP-MGGMTPGPNFS 1537

Query: 1492 PTSSPGYSPSSPGYSP--------------------SSPGYSPTSPGYSPTSPGYSPTSP 1531
            P+ S   S  SPGYSP                    +SP     SP YSP S  Y+P SP
Sbjct: 1538 PSGSSDASGLSPGYSPGWSPQPGSPGSPGPSMSPYIASPA-GAASPLYSPHSNLYAPASP 1596

Query: 1532 GYSPTSPTYSPSSPGYSPTSP 1552
              +P SPTYSP+SP YSPTSP
Sbjct: 1597 SSTPASPTYSPTSPSYSPTSP 1617



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 66/117 (56%), Gaps = 4/117 (3%)

Query: 1530 SPGYSPTSPTYSPSSPGYSPTSPAYSPT-SPSYSPTSPS-YSPTSPSYSPTSPSYSPTSP 1587
            SP  +P +   +PS PG S  SP    T  P++SP+  S  S  SP YSP       +  
Sbjct: 1504 SPQTTPWNQGATPSYPGSSSWSPMGGMTPGPNFSPSGSSDASGLSPGYSPGWSPQPGSPG 1563

Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
            S  P+   Y   SP+    SP YSP S  Y+P SP+ +P SP+YSPTSPSYSPTSP+
Sbjct: 1564 SPGPSMSPYI-ASPA-GAASPLYSPHSNLYAPASPSSTPASPTYSPTSPSYSPTSPN 1618



 Score = 64.3 bits (155), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/131 (44%), Positives = 70/131 (53%), Gaps = 17/131 (12%)

Query: 1541 SPSSPGYSP-TSPAYSPTSPSYSPTSPSYSPTS-----PSYSPTSPS-YSPTSPSYSPTS 1593
            S ++P  SP T+P     +PSY P S S+SP       P++SP+  S  S  SP YSP  
Sbjct: 1497 SAATPSMSPQTTPWNQGATPSY-PGSSSWSPMGGMTPGPNFSPSGSSDASGLSPGYSPGW 1555

Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1653
                 +  S  P+   Y   SPA    SP YSP S  Y+P SPS    S    P SP+YS
Sbjct: 1556 SPQPGSPGSPGPSMSPYI-ASPA-GAASPLYSPHSNLYAPASPS----ST---PASPTYS 1606

Query: 1654 PTSPSYSPTSP 1664
            PTSPSYSPTSP
Sbjct: 1607 PTSPSYSPTSP 1617



 Score = 45.8 bits (107), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/29 (65%), Positives = 25/29 (86%)

Query: 1723 TSPNYSPTSSSYSPTSPSYSPSSPTYSPS 1751
            +SP Y+P S  YSPTSP+YSP+SP+YSP+
Sbjct: 1775 SSPQYTPASPQYSPTSPTYSPTSPSYSPT 1803


>gi|19112465|ref|NP_595673.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe
            972h-]
 gi|548817|sp|P36594.1|RPB1_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb1; Short=RNA
            polymerase II subunit 1; Short=RNA polymerase II subunit
            B1; AltName: Full=DNA-directed RNA polymerase III largest
            subunit
 gi|256599715|pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|256599727|pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
 gi|5055|emb|CAA39916.1| RNA polymerase II large subunit [Schizosaccharomyces pombe]
 gi|6018696|emb|CAB57941.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe]
          Length = 1752

 Score = 1711 bits (4432), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 891/1604 (55%), Positives = 1128/1604 (70%), Gaps = 94/1604 (5%)

Query: 7    YSPAEV--AKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDR 62
            +SP+ V   +V  VQFGILSP+EIR MSV +IE  ET +    +P+ GGL DPRLGTIDR
Sbjct: 6    FSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TC   MA+CPGHFGH+ELAKP+FHIGF+  +  I+  VC+NC K+  D  + KF 
Sbjct: 66   QFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFN 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP-LKKNKGGCGAQQPKLTIE 181
               + R+PKNRL  + + CK K  C+ G        D   P      GGCGA QP +  +
Sbjct: 126  DTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAAQPTIRKD 185

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+++   +    K+  D+  LPE    K+ L+   V  +   IS ED   LGLN +YARP
Sbjct: 186  GLRLWGSW----KRGKDESDLPE----KRLLSPLEVHTIFTHISSEDLAHLGLNEQYARP 237

Query: 242  DWMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            DWMI+ VLP+PPP V          R  DDLTH+L+ II+ N N+RR E+ GAPAHI+SE
Sbjct: 238  DWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSE 297

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
            + QLLQFH+ATY DNE+ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSART
Sbjct: 298  YEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSART 357

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VIT DP +++D+LGVP SIA  LTYPETVTPYNI +L+ELV  GP   P   GAKYIIRD
Sbjct: 358  VITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHP---GAKYIIRD 414

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
             G+R+DLRY K++ D  L  G++VERH+ DGD V+FNRQPSLHKMS+MGHRI++MPYSTF
Sbjct: 415  TGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTF 474

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            RLNLSVTSPYNADFDGDEMNMHVPQS ETRAE+ E+ MVPK IVSPQSN+PVMGIVQDTL
Sbjct: 475  RLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTL 534

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
             G RK + RD F+ ++  MNI++W  D+DG +P P ILKP+ LWTGKQ+ +LIIPK INL
Sbjct: 535  AGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGINL 594

Query: 592  FRTAAWHADNDKGILTA-GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             R      D+DK  L+   D+ + IE GE++ G + KKT+G S G L+H IW+E GP+  
Sbjct: 595  IR------DDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEIC 648

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            + F    Q +VNYWLL N FSIGIGDTIADA TM+ +  T+ +A+  V   I+ AQ   L
Sbjct: 649  KGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRL 708

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            +PEPG T+ ESFE KV+++LN ARD AG SA+ SL +SNN+K MV AGSKGSFINISQM+
Sbjct: 709  KPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMS 768

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQ VEGKRIPFGF  RTLPHF KDD  PESRGF+ENSYLRGLTPQEFFFHAM GRE
Sbjct: 769  ACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGRE 828

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRLVKAMED+MV+YDGTVRN++GD+IQF YGEDG+D+  +E Q 
Sbjct: 829  GLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQV 888

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
             DSL++   +F+K +R ++ E+     YM     +D      ++D+ D E  +L ADR  
Sbjct: 889  FDSLRLSTKQFEKKYRIDLMEDRSLSLYMENSIEND----SSVQDLLDEEYTQLVADREL 944

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I   GD+ WPLPVN++R+I NA + F ++ ++P+D+ P +++  +++L  +L +  
Sbjct: 945  LCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFR 1004

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G D ++ + Q NATL F ILLRS FA KRV+ E+RL + AFEW++GE+E+RF Q++V+PG
Sbjct: 1005 GSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPG 1064

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTPSL+++L 
Sbjct: 1065 EMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYLM 1124

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            P + +  + AKNVQ  +E+TTL +VT ATE+ YDPDP  T+IEED +FV++++ +PDE++
Sbjct: 1125 PWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEV 1184

Query: 1191 APE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
                 K SPWLLR+EL+R  M+DKKLSM+ VA KI + F+ DL  I+++DNADKLI+R R
Sbjct: 1185 EENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRCR 1244

Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---------------------- 1286
            I+ D+  K E +D   E+DVFLK IE +ML  ++LRGV                      
Sbjct: 1245 IIRDDDRKAEDDDNMIEEDVFLKTIEGHMLESISLRGVPNITRVYMMEHKIVRQIEDGTF 1304

Query: 1287 -------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
                         NL   M  E VDA RT SN  +EI+++LGIEA R ALL ELR VI F
Sbjct: 1305 ERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEF 1364

Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
            DGSYVNYRHLA+LCD MT RGHLMAITRHGINR +TG +MRCSFEETV+IL+DAA   E 
Sbjct: 1365 DGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEK 1424

Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKN-AIELQLPSYMEGLEFGMTPARSPV- 1451
            D  +G++ENIMLGQLAP+GTG   +YL+ +ML N ++   +P+       GM  ++ P  
Sbjct: 1425 DDCKGISENIMLGQLAPMGTGAFDIYLDQDMLMNYSLGTAVPTLAGS---GMGTSQLPEG 1481

Query: 1452 SGTPYHDG-MMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSP 1510
            +GTPY    M+  G++ SP+        A FSP V G +        Y         +SP
Sbjct: 1482 AGTPYERSPMVDSGFVGSPDA-------AAFSPLVQGGSEGREGFGDYGL----LGAASP 1530

Query: 1511 GYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1554
                 SPGY  TSP  S  SPGY  TSP+YSPSSP    TSPAY
Sbjct: 1531 YKGVQSPGY--TSPFSSAMSPGYGLTSPSYSPSSP-GYSTSPAY 1571


>gi|70996164|ref|XP_752837.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
            fumigatus Af293]
 gi|66850472|gb|EAL90799.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Aspergillus fumigatus Af293]
 gi|159131590|gb|EDP56703.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Aspergillus fumigatus A1163]
          Length = 1750

 Score = 1710 bits (4428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 921/1764 (52%), Positives = 1203/1764 (68%), Gaps = 122/1764 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            FPYS A +  ++ +QFG+ SP+EI++MSVV +E+ ET   +R +P+  GL+DPRLGTIDR
Sbjct: 6    FPYSKAPLRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDEQRMRPRTKGLNDPRLGTIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            +  CETC     ECPGHFGH+ELA P+FHIGF+  V  ++ +VC NC KI AD  D KF 
Sbjct: 66   QWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKVKKLLETVCHNCGKIKADTSDSKFL 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGG---DEIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
            +AL++R+PK R   I    K+   CE     DE +   ++  +PL+++ GGCG  QP + 
Sbjct: 126  EALRMRDPKRRFDHIWRLSKDVLICEADPPPDEDEPFSKESSKPLRRH-GGCGNAQPTIR 184

Query: 180  IEGMKMIAEYKAQRKKNDDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
             EG+ ++  +K  +   D+ E Q PE    K+ +T +  L V + IS ED +++GL+  Y
Sbjct: 185  KEGITLVGTWKPNKSMMDEDEMQQPE----KKVITPQMALNVFRNISHEDVRIMGLSNDY 240

Query: 239  ARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+WMI+ VLP+PPPPV             R  DDLT++LA IIR N+N++R E+ GAP
Sbjct: 241  ARPEWMIITVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIIRANQNVQRCEQEGAP 300

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             H++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I SRLK KEGR+R NLMGKRV
Sbjct: 301  EHVVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRV 360

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT DP +++D++GVP SIA  LTYPE VTPYNIE+L++LV  GP+  PG   A
Sbjct: 361  DFSARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANGPNEHPG---A 417

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            +YI+RD+G+R+DLR+ +++    L  G+KVERHL DGD +LFNRQPSLHK S+MGHR+++
Sbjct: 418  RYIVRDNGERIDLRHARRAGGQQLLYGWKVERHLMDGDIILFNRQPSLHKESMMGHRVRV 477

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E+RAE+ +L +VP  IVSPQ N P+MG
Sbjct: 478  MPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELKQLALVPLNIVSPQRNGPLMG 537

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDTL G  KI +RD F+ K+  MNI++W  D+DG +P P ILKPRP WTGKQ+ ++ +
Sbjct: 538  IVQDTLCGIYKICRRDVFLTKEQVMNIMLWVPDWDGVIPPPAILKPRPRWTGKQMISMAL 597

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            P  +NL R    ++   +      D  + I  G+L+ G   KKT+G S G +IH I+ E 
Sbjct: 598  PSGLNLLRVEKDNSSLAEKFSPLTDGGLLIHGGQLMYGMFSKKTVGASGGGVIHTIFNEY 657

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GPD A  F    Q +VNYWLL N FSIGIGDTI DA T++ I + + + K  V+ +   A
Sbjct: 658  GPDTAVAFFNGAQTIVNYWLLHNGFSIGIGDTIPDAITIQRIENCVRERKKEVEAITASA 717

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             + +LEP PG  + E+FE+KV++ LN ARDEAGS  +KSL + NN   M  +GSKGS IN
Sbjct: 718  TENTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTIN 777

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHA
Sbjct: 778  ISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHA 837

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGDVIQF+YGEDG+D   
Sbjct: 838  MAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQFIYGEDGLDGAH 897

Query: 886  IESQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE+Q +D ++    +F + FR + MD E +  P  +  E  +++    E++   D E ++
Sbjct: 898  IENQRVDVIRCSDEKFRERFRVDLMDPERSLGPEVL--EQANEIAGDVEVQRYLDEEWEQ 955

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            L  DR  L T +A   D    LP+N++R++  A+ TF++     SD+HP EV+  V  L 
Sbjct: 956  LLKDRAFLRT-VAKEDDEMMQLPINVQRILETARSTFRIREGAISDLHPAEVIPQVRSLL 1014

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
            +RL VV G+DP+S EAQ+NAT+ F   LRS  A +R++ E+ + + AF+ V+G IESRF 
Sbjct: 1015 DRLLVVRGDDPISREAQENATMLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGAIESRFA 1074

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            ++   PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA  IKTP
Sbjct: 1075 KAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTP 1134

Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
            S++V+  P     KE AK ++  +E+T+LRSVTEATE++YDPD   T+IE D + V+SY+
Sbjct: 1135 SMTVYQLPHRCHDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQTTVIENDRDMVESYF 1194

Query: 1184 EMPDEDI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
             +P ED+  A  + S WLLRI L+R  ++DK L++  VA KI Q +  D+  IF+D+NAD
Sbjct: 1195 IIP-EDVTDATSRQSKWLLRIILSRPKLLDKGLTVQDVAAKIKQAYPKDIAVIFSDNNAD 1253

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            + ++RIR +  +  K + +DE  E DV LKK+E ++L  + LRGV               
Sbjct: 1254 EQVIRIRQI--QDYKEDEDDEDIEYDVTLKKLEQHLLDTLTLRGVQGVERAFINEKSKVR 1311

Query: 1287 -----NLLAV----MCHE-----------------DVDARRTTSNHLIEIIEVLGIEAVR 1320
                 +L A     +C E                  VDA RT SN  IE+ EV GIEA R
Sbjct: 1312 VLEDGSLFASKTDPLCKEWVLETSGSSLGEVLAVPGVDATRTYSNQFIEVFEVFGIEAAR 1371

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             A+L EL  V++FDGSYVN+RHLA+L D MT RG+L  +TRHGINR D G +MRCSFEET
Sbjct: 1372 TAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEET 1431

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA F E D  RGV+EN++LGQ+AP GTG+  LYL+  +L   +       + G 
Sbjct: 1432 VEILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDLYLDQNLLNTVVSNNARFGVMGT 1491

Query: 1441 EFGMTPARSPVSGTPYHDG--MMSPGYLFSPN--LRLSPVTDA---------QFSPYVG- 1486
                    S  + T Y  G  M    ++ +P+     SP+  A         ++ P  G 
Sbjct: 1492 IGAKDAIISDGAATQYDTGSPMQESAFIGTPDPESAFSPIRQAGAESPGGFTEYQPTGGF 1551

Query: 1487 GMAFSP--TSSPGYSPSSP-GYSPSSPGYSPTSP------GYSPTSPGYSPTSPGYSPTS 1537
            G  FSP  TS  GYSPSSP   +P+SPGYSPTS       G   TSP +  TSPG+SP S
Sbjct: 1552 GGGFSPAATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSPRFM-TSPGFSPAS 1610

Query: 1538 PTYSPSSPGYSPTSPAY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
            P+++P+SP YSPTSPAY   SPTSPSYSPTSP +SPTSP+YSPTSPS+SP SP++SPTSP
Sbjct: 1611 PSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSP 1670

Query: 1595 SYSPTSPSY----------SPTSPAYSPTSPAYSPTSP-AYSPTSPSY--SPTSPSYSPT 1641
            SYSPTSP+           SPTSP Y+PTSP +SPTSP  YSPTSP++  SPTSP   PT
Sbjct: 1671 SYSPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPG-GPT 1729

Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPA 1665
            SP YSPTSP++SP   SY P+S A
Sbjct: 1730 SPGYSPTSPAFSP---SYVPSSSA 1750



 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/224 (54%), Positives = 148/224 (66%), Gaps = 38/224 (16%)

Query: 1575 YSPTSPSYSPTSPSYSPTSPS-YSPTSP-SYSPTSPAYSPTSP------AYSPTSPAYSP 1626
            Y PT       SP+   TSP+ YSP+SP S +PTSP YSPTS           TSP +  
Sbjct: 1545 YQPTGGFGGGFSPA--ATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSPRFM- 1601

Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSY---SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            TSP +SP SPS++PTSP+YSPTSP+Y   SPTSPSYSPTSP +SPTSP YSPTSPS+SP 
Sbjct: 1602 TSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPA 1661

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA----SPYSPTSPNYSPTSSSYSPTSP 1739
            SP +SPTSPSY             SP+SP +  A    SP SPTSP Y+PTS  +SPTSP
Sbjct: 1662 SPAFSPTSPSY-------------SPTSPAIGGAGRHLSPTSPTSPKYTPTSPGWSPTSP 1708

Query: 1740 -SYSPSSPTY--SPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSA 1780
             +YSP+SP +  SP+SP   G  +P YSP+SP +SPS  Y PS+
Sbjct: 1709 QTYSPTSPNFAGSPTSP--GGPTSPGYSPTSPAFSPS--YVPSS 1748



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/212 (51%), Positives = 134/212 (63%), Gaps = 34/212 (16%)

Query: 1596 YSPTSPSYSPTSPAYSPTSPA-YSPTSP-AYSPTSPSYSP-------------TSPSYSP 1640
            Y PT       SPA   TSPA YSP+SP + +PTSP YSP             TSP +  
Sbjct: 1545 YQPTGGFGGGFSPA--ATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSPRFM- 1601

Query: 1641 TSPSYSPTSPSYSPTSPSYSPTSPAY---SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
            TSP +SP SPS++PTSP+YSPTSPAY   SPTSP YSPTSP +SPTSP YSPTSPS++P 
Sbjct: 1602 TSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPA 1661

Query: 1698 SAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNA 1756
            S       A+SP+SP  SP SP       + SPTS    PTSP Y+P+SP +SP+SP   
Sbjct: 1662 SP------AFSPTSPSYSPTSPAIGGAGRHLSPTS----PTSPKYTPTSPGWSPTSPQTY 1711

Query: 1757 GGGNPDY--SPSSPQYSPSAGYSPSAPGYSPS 1786
               +P++  SP+SP    S GYSP++P +SPS
Sbjct: 1712 SPTSPNFAGSPTSPGGPTSPGYSPTSPAFSPS 1743



 Score =  134 bits (337), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 120/187 (64%), Gaps = 21/187 (11%)

Query: 1610 YSPTSPAYSPTSPAYSPTSPS-YSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
            Y PT       SPA   TSP+ YSP+SP S +PTSP YSPTS     +      TSP + 
Sbjct: 1545 YQPTGGFGGGFSPA--ATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSP-GMGITSPRFM 1601

Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPN 1726
             TSPG+SP SPS++PTSP YSPTSP+Y             SP+SP  SP SP +SPTSPN
Sbjct: 1602 -TSPGFSPASPSFAPTSPAYSPTSPAYG----------QASPTSPSYSPTSPGFSPTSPN 1650

Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPS 1786
            YSPTS S+SP SP++SP+SP+YSP+SP   G G    SP+SP    S  Y+P++PG+SP+
Sbjct: 1651 YSPTSPSFSPASPAFSPTSPSYSPTSPAIGGAGR-HLSPTSPT---SPKYTPTSPGWSPT 1706

Query: 1787 STSQYTP 1793
            S   Y+P
Sbjct: 1707 SPQTYSP 1713


>gi|324120584|dbj|BAJ78683.1| RNA polymerase II largest subunit [Lucidina biplagiata]
          Length = 1685

 Score = 1710 bits (4428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 886/1639 (54%), Positives = 1135/1639 (69%), Gaps = 124/1639 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRYVKRVQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++L+KP+FH+GF+   + I+R VCF CSK+L   ++ K K+ +
Sbjct: 66   CQTCAGNMTECPGHFGHIDLSKPVFHVGFITKTIKILRCVCFYCSKLLVSPNNPKIKEVV 125

Query: 126  KIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKN-KGGCGAQQPKLTIEG 182
                  P+ RL  + D CK K  CEGGDE+DV G++GE+P K+   GGCG  QP +   G
Sbjct: 126  MKSKGQPRKRLTFVYDLCKGKNICEGGDEMDV-GKEGEDPGKRQGHGGCGRYQPNIRRAG 184

Query: 183  MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
            + + AE+K     N+D +      E+K  L+AERV  +LK I+DE+C +LG++PK+ARPD
Sbjct: 185  LDLTAEWK---HVNEDSQ------EKKIPLSAERVWEILKHITDEECFILGMDPKFARPD 235

Query: 243  WMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
            WMI+ VLP+PP             +  DDLTH+LA II+ N  L+R E  GAPAH+ISE 
Sbjct: 236  WMIVTVLPVPPLPVRPAVVMYGSAKNQDDLTHKLADIIKSNNELQRNESTGAPAHVISEN 295

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
             ++LQFH+AT  DN++PG PRA Q+SG+P+K++ +RLK KEGRIRGNLMGKRVDFSARTV
Sbjct: 296  IKMLQFHVATLVDNDMPGMPRAMQKSGKPLKALKARLKGKEGRIRGNLMGKRVDFSARTV 355

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
            ITPDP + IDQ+GVP SIA NLT+PE VTP+N +++ ELV+ G    PG   AKYI+RD+
Sbjct: 356  ITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFDKMLELVQRGNSQYPG---AKYIVRDN 412

Query: 413  GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
            G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+STFR
Sbjct: 413  GERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFR 472

Query: 473  LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
            +NLS TSPYNADFDGDEMN+HVPQS ETRAEV  L + P+ I++PQ+N+PVMGIVQDTL 
Sbjct: 473  MNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHITPRQIITPQANKPVMGIVQDTLT 532

Query: 533  GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
              RK+TKRD FI K+  MN+LM+   +DGK+P+P ILKP+PLWTGKQ+F+LIIP  +N+ 
Sbjct: 533  AIRKMTKRDVFINKEQMMNLLMFLPIWDGKMPRPAILKPQPLWTGKQIFSLIIPGNVNMI 592

Query: 593  RTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E+G +
Sbjct: 593  RTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHE 652

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
               +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A + 
Sbjct: 653  VCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNM 712

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV AGSKGS INISQ
Sbjct: 713  ELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQ 772

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            + ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGG
Sbjct: 773  VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGG 832

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E 
Sbjct: 833  REGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEMVEF 892

Query: 889  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
            QTL ++K+    F++ FRF+   E +      ++    L    E+    + E ++L+ DR
Sbjct: 893  QTLPTVKLSNKAFERKFRFDPSNERYLRRIFNEDVSRQLMGSGEVISELEREWEQLQKDR 952

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
              L  +I  SG+S   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V +L ++  +
Sbjct: 953  EAL-RQIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVRELLQKCII 1011

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            V G+D LS +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+   
Sbjct: 1012 VAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQAN 1071

Query: 1069 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1128
            PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VF
Sbjct: 1072 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1131

Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1188
            L        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD 
Sbjct: 1132 LTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMPDF 1191

Query: 1189 DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
            D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIR
Sbjct: 1192 D--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR 1249

Query: 1249 IMNDEAPK----GELNDESAEDDVFLKKIESNMLTEMALRGV------------------ 1286
            IMN +  K    G+ + +  +DD+FL+ IE+NML++M L+G+                  
Sbjct: 1250 IMNSDDGKFTEGGDEDVDKMDDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDSKKR 1309

Query: 1287 ----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                                  +L+ V+   DVD  RT SN + EI  VLGIEAVR+++ 
Sbjct: 1310 IVITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVE 1369

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
             E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L
Sbjct: 1370 KEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1429

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGM 1444
            +DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  I +   +  + +  GM
Sbjct: 1430 MDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKMGIPIPQTNGGDIMSSGM 1489

Query: 1445 ------TPARSPVSG-TPYHDGM--MSPGYLFS-PNLRLSPVTDAQFSPYVGGMAFSPTS 1494
                  TP+ SP    TP++ G      G  +S PN+  S +T        GG AFSP++
Sbjct: 1490 FFGAVATPSMSPTGAMTPWNQGATPFVGGSAWSPPNMLGSGMTP-------GGPAFSPSA 1542

Query: 1495 SPGYSPSSPGY------SPSSPGYSP----------------------TSPGYSPTSPGY 1526
            +   S  SP Y      +P SP  SP                       SP  +P SPGY
Sbjct: 1543 ASDASGMSPAYGAWSSPTPQSPAMSPFIPSPRGSSPSYSPSSPAYQQIASPSMTPASPGY 1602

Query: 1527 SPTSPGYSPTSPTYSPSSP 1545
            + +SPGY+PTSP YSP+SP
Sbjct: 1603 ATSSPGYTPTSPHYSPTSP 1621



 Score = 51.6 bits (122), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 76/154 (49%), Gaps = 40/154 (25%)

Query: 1586 SPSYSPTSPSYSPTSPSYSP--TSPAYSP---TSPAYSPTSPAYSPTSPS-YSPTSPSY- 1638
            +PS SPT  + +P +   +P     A+SP        +P  PA+SP++ S  S  SP+Y 
Sbjct: 1496 TPSMSPTG-AMTPWNQGATPFVGGSAWSPPNMLGSGMTPGGPAFSPSAASDASGMSPAYG 1554

Query: 1639 -----SPTSPSYSPTSPSYSPTSPSYSPTSPAYSP-TSPGYSPTSPSYSPTSPTYSPTSP 1692
                 +P SP+ SP  PS   +SPSYSP+SPAY    SP  +P SP Y+ +SP Y+PTSP
Sbjct: 1555 AWSSPTPQSPAMSPFIPSPRGSSPSYSPSSPAYQQIASPSMTPASPGYATSSPGYTPTSP 1614

Query: 1693 SYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPN 1726
                                       YSPTSPN
Sbjct: 1615 H--------------------------YSPTSPN 1622



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 19/138 (13%)

Query: 1656 SPSYSPTSPAYSPTSPGYSP--TSPSYSP---TSPTYSPTSPSYNPQSAKYSPSLAYSPS 1710
            +PS SPT  A +P + G +P     ++SP        +P  P+++P +A  +  +     
Sbjct: 1496 TPSMSPTG-AMTPWNQGATPFVGGSAWSPPNMLGSGMTPGGPAFSPSAASDASGM----- 1549

Query: 1711 SPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY 1770
            SP     S  +P SP  SP   S   +SPSYSPSSP Y   +       +P  +P+SP Y
Sbjct: 1550 SPAYGAWSSPTPQSPAMSPFIPSPRGSSPSYSPSSPAYQQIA-------SPSMTPASPGY 1602

Query: 1771 SPSA-GYSPSAPGYSPSS 1787
            + S+ GY+P++P YSP+S
Sbjct: 1603 ATSSPGYTPTSPHYSPTS 1620


>gi|390363773|ref|XP_003730447.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Strongylocentrotus purpuratus]
          Length = 1880

 Score = 1710 bits (4428), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 881/1594 (55%), Positives = 1114/1594 (69%), Gaps = 95/1594 (5%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  VR VQFG+LSPDE+R+ SV +  I + E  E GKPK GGL DPR G IDR  +
Sbjct: 9    SKAPMRNVRRVQFGVLSPDEMRRNSVTEGGIRYSEIMEAGKPKLGGLMDPRQGAIDRTSR 68

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  N  +CPGHFGH+ELAK +FHIGF+   + ++R VCF CSK+L D +  K K+ L
Sbjct: 69   CQTCACNQTDCPGHFGHMELAKAVFHIGFLTKTIKVLRCVCFFCSKLLVDANHPKIKEIL 128

Query: 126  -KIR-NPKNRLKKILDACKNKTKCEGGDEID------VPGQDGEE-PLKK-NKGGCGAQQ 175
             K +  P+ RL  +   C+ K  CEGG+E+D      +  ++GEE P KK + GGCG  Q
Sbjct: 129  IKTKGQPRKRLLHVYTECRKKKMCEGGEEMDQTFDANLAQREGEEMPEKKVSHGGCGRYQ 188

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P++   G+ + AE+K     N+D +      E+K  LTAERV  + KRISDE+   LG++
Sbjct: 189  PQIRRSGLDLSAEWK---HVNEDSQ------EKKIVLTAERVHEIFKRISDEESIALGMD 239

Query: 236  PKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAP 285
            PK+ RPDWMI+ VLP+PP  VRP+          DDLTH+LA I++ N  L+R E+NGA 
Sbjct: 240  PKFTRPDWMIITVLPVPPLCVRPAVVMFGSTRNQDDLTHKLADIMKINNQLKRNEQNGAA 299

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
            AHII+E  ++LQFH+AT  DNELPG PRA Q+SGRP+KS+  RLKAKEGRIRGNLMGKRV
Sbjct: 300  AHIIAEDTRMLQFHVATIIDNELPGLPRAMQKSGRPLKSLKQRLKAKEGRIRGNLMGKRV 359

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSAR VITPDP + IDQ+GVP +IA NLTYPE VTP+NI +L+ELV  G +  PG   A
Sbjct: 360  DFSARAVITPDPNLMIDQVGVPRTIATNLTYPEIVTPFNIAKLQELVSRGHNQYPG---A 416

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KYIIRD+G+R+DLR+  K SD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+KI
Sbjct: 417  KYIIRDNGERVDLRFHPKPSDLHLQCGYKVERHLRDDDVVIFNRQPTLHKMSMMGHRVKI 476

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            + +STFRLNLSVT+PYNADFDGDEMN+HVPQS ETRAEV E++MV + +++PQSNRPVMG
Sbjct: 477  LTWSTFRLNLSVTTPYNADFDGDEMNLHVPQSMETRAEVSEMIMVSRNMITPQSNRPVMG 536

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQD+L   RK TKRD F+ K   MN+L++  ++DGK+P+P ILKPRPLWTGKQ+  L+I
Sbjct: 537  IVQDSLCAIRKFTKRDVFVTKPNVMNLLLFLPNWDGKIPKPAILKPRPLWTGKQLLTLVI 596

Query: 586  PKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            P  +N+ R  + H D  D+G    L+ GDT V I  GEL++G +CKKT+G S G+L H+I
Sbjct: 597  PDNVNVVRFHSTHPDGEDRGPYKWLSPGDTKVYIVNGELITGIVCKKTVGASGGTLGHII 656

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E G + A++F    Q LVN WLL    SIGIGD IADA T + I +TI KAK +V  +
Sbjct: 657  FMERGHEIAKEFYSVVQVLVNNWLLLEGHSIGIGDCIADASTYDDIQNTIRKAKQDVIEV 716

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
            I++A +  L P PG ++ ++FEN+VN++LN ARD+ G SAQKSLSE NN K MV AGSKG
Sbjct: 717  IEKAHNDELTPTPGNSLRQTFENQVNRLLNEARDKTGGSAQKSLSEFNNFKTMVVAGSKG 776

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP E 
Sbjct: 777  SKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEM 836

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV+YDGT RNS   ++Q  YGEDG+
Sbjct: 837  FFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVRYDGTCRNSNDQLVQLRYGEDGL 896

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
            D   IE Q L SLK     F+K F+F+ + E        ++ + D+     +    + E 
Sbjct: 897  DGTSIEFQNLASLKPSHKAFEKRFKFDYNNEKMLRRCFNEKIVKDVVANAHVHLELEKEY 956

Query: 942  QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
             +L+ DR ++  +I   G+S   LP NL R+IWNAQ+ F ++ R PS++HP  V+E V  
Sbjct: 957  DQLKEDR-EVLRKIFPKGESKVALPCNLDRMIWNAQQIFHINTRLPSELHPSFVLEGVRD 1015

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L+++L +V GED +S +AQ+NAT   N L+RST +S RV +EH+L+ E+FEW++GEIE+R
Sbjct: 1016 LKKKLVIVKGEDAISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGEIETR 1075

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F QSL   GEM+G +AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIIN++KK +
Sbjct: 1076 FNQSLAMAGEMVGALAAQSLGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINISKKPR 1135

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPSL+ FL        ERAK++ C LE+TTLR VT  T ++YDP+P GT+I ED ++V  
Sbjct: 1136 TPSLTCFLLGKAARDAERAKDILCRLEHTTLRKVTANTAIYYDPEPQGTVIAEDQDWVNL 1195

Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            YY MPD D  P +ISPWLLR+EL+R+ M D+KLSM  +AEKIN  F DDL CIFNDDNA+
Sbjct: 1196 YYMMPDFD--PTRISPWLLRVELDRKRMTDRKLSMEQIAEKINAGFGDDLNCIFNDDNAE 1253

Query: 1242 KLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGVNLLA-------- 1290
            KL+LRIRIMN +  K +  +E     EDDVFL+ IESNMLT+M L+G+  +A        
Sbjct: 1254 KLVLRIRIMNSDENKFQDEEEQVDKMEDDVFLRCIESNMLTDMTLQGIEQIAKVYMHLPQ 1313

Query: 1291 --------------------------------VMCHEDVDARRTTSNHLIEIIEVLGIEA 1318
                                            V+   +VD  RT SN + EI +VLGIEA
Sbjct: 1314 VANKKRIIITEEGEFKHIAEWILETDGTAMMKVLSDPEVDPVRTFSNDICEIFQVLGIEA 1373

Query: 1319 VRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE 1378
            VR+++  E+  VISFDGSYVNYRHLA+LCD MT RGHLMAITRHGINR D G +MRCSFE
Sbjct: 1374 VRKSVETEMNHVISFDGSYVNYRHLALLCDVMTARGHLMAITRHGINRQDVGALMRCSFE 1433

Query: 1379 ETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME 1438
            ETVDIL DA    E+D+L+GV+ENIMLG+LA +GTG   L L+ E  K+ +E+ +     
Sbjct: 1434 ETVDILNDAGAHGETDHLKGVSENIMLGKLAGLGTGSFDLLLDAEKCKHGMEIPM-GMGA 1492

Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGY--LFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
            GL  GMTP     S         SP Y   +SP  + SP + A  SPY+   A   + S 
Sbjct: 1493 GLGSGMTPGGPGFSPANSESTGFSPAYSPAWSPQPQ-SPGSPAN-SPYIPSPAGPMSPSY 1550

Query: 1497 GYS-----PSSPGYSPSSPGYSPTSPGYSPTSPG 1525
              +     P+SP  +P SPGYSPTSP YSPTSPG
Sbjct: 1551 SPASPSYLPASPA-TPQSPGYSPTSPSYSPTSPG 1583



 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 62/92 (67%), Gaps = 22/92 (23%)

Query: 1679 SYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPT 1737
            ++SP+SPTYSP SPSY             SP+SP+ SP+SP YSPTSP YSPTS  YSP 
Sbjct: 1779 NFSPSSPTYSPASPSY-------------SPTSPKYSPSSPKYSPTSPTYSPTSPKYSPA 1825

Query: 1738 SPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQ 1769
            SP+YSP+SP YSPSS        P YSP+SP+
Sbjct: 1826 SPTYSPTSPKYSPSS--------PTYSPTSPK 1849



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 49/90 (54%), Gaps = 21/90 (23%)

Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS---------- 1618
            +P  P +SP +   +  SP+Y   SP++SP     SP SPA SP  P+ +          
Sbjct: 1499 TPGGPGFSPANSESTGFSPAY---SPAWSPQ--PQSPGSPANSPYIPSPAGPMSPSYSPA 1553

Query: 1619 -----PTSPAYSPTSPSYSPTSPSYSPTSP 1643
                 P SPA +P SP YSPTSPSYSPTSP
Sbjct: 1554 SPSYLPASPA-TPQSPGYSPTSPSYSPTSP 1582


>gi|324120508|dbj|BAJ78645.1| RNA polymerase II largest subunit [Lepidocampa weberi]
          Length = 1558

 Score = 1709 bits (4425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 867/1589 (54%), Positives = 1112/1589 (69%), Gaps = 106/1589 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MS  +  I + E  E G+PK GGL DPR G +DR  +
Sbjct: 7    SKAPIRQVKKVQFGILSPDEIRRMSATEGGIRYPEVMEGGRPKLGGLMDPRQGVVDRLSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP++H GF+  ++  +R VCF CSK+L      + K+ L
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVYHSGFLTKIVKTLRCVCFYCSKLLVSPTTPRIKEIL 126

Query: 126  KIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQDG---EEPLKKNKGGCGAQQPKLTI 180
            +     P+ RL  + D CK KT CEGGDE+D+  +D    ++P +   GGCG  QPK+  
Sbjct: 127  QKSKGQPRKRLAAVYDLCKGKTICEGGDEMDLQREDDPSVQQPKRAGHGGCGRYQPKIRR 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
              +++ AE+K     N+D +      E+K  LTAERV  + + ISDE+C +LG++PK+AR
Sbjct: 187  AALELTAEWK---HLNEDSQ------EKKIALTAERVHEIFRHISDEECYILGMDPKFAR 237

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  L+R E  GA  HI+S
Sbjct: 238  PDWMIVTVLPVPPLCVRPAVVMFGSARNQDDLTHKLSDIIKANNELKRNEETGAATHILS 297

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG PRA Q+SGRP+K+I +RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 298  ENVKMLQFHVATLVDNDMPGLPRAMQKSGRPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 357

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ELV  G    PG   AKYIIR
Sbjct: 358  TVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPG---AKYIIR 414

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+ +R+DLR+  KSSD HL+ GYKVERH+ DGD ++FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 415  DNDERIDLRFHPKSSDLHLQCGYKVERHIRDGDLIIFNRQPTLHKMSMMGHRVKVLPWST 474

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLSVTSPYNADFDGDEMN+HVPQS ETRAEV  + +  + I++PQ+N+PVMGIVQDT
Sbjct: 475  FRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHITTRQIITPQANKPVMGIVQDT 534

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD F+EK+   N+LM    +DGK+PQP ILKP+PLWTGKQVF+LIIP  +N
Sbjct: 535  LTAVRKMTKRDVFLEKEQMFNVLMHLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVN 594

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ + E+G
Sbjct: 595  MIRTHSAHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICFVELG 654

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             +   +F G+ Q ++N WLL    SIGIGD+IAD +T   I  TI KAK +V  +I++A 
Sbjct: 655  HEVCGQFYGNIQTVINNWLLLEGHSIGIGDSIADPQTYLEIQKTIKKAKEDVIEVIQKAH 714

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 715  NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 774

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAM
Sbjct: 775  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAM 834

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGT+RNS+G +IQ  YGEDG+    +
Sbjct: 835  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGEHV 894

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E Q+L ++K+    F+K F+F+   E +      ++ + ++    ++    + E  +L +
Sbjct: 895  EFQSLPTVKLSNRAFEKKFKFDPSNERYLRRVFTEDIMKEVMGSGDVISGLEKEWGQLSS 954

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L  +I  SG++   LP NL R+IWN QK F ++ R P+D+ P+ V++ V  L ++ 
Sbjct: 955  DRDSL-RQIFPSGENKVVLPCNLHRMIWNVQKIFHINRRAPTDLSPLRVIQGVQDLIKKC 1013

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +V GED LS +A +NATL F  L+RST  +K+V +E RL+ EAFEW+IGEIE+RF Q+ 
Sbjct: 1014 VIVAGEDRLSKQANENATLLFQCLVRSTLCTKQVAEEFRLSSEAFEWLIGEIETRFQQAQ 1073

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
            V PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+
Sbjct: 1074 VQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 1133

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMP
Sbjct: 1134 VFLTGNAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMP 1193

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LR
Sbjct: 1194 DFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLR 1251

Query: 1247 IRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------------- 1286
            IRIMN +  K +  +E     EDD+FL+ IE+NML++M L+G+                 
Sbjct: 1252 IRIMNSDDSKFQEEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDSKK 1311

Query: 1287 -----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
                                   +L+ V+   DVD  RT SN + EI  VLGIEAVR+++
Sbjct: 1312 RIIVTDTGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSV 1371

Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
              E+ +V+SF G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+
Sbjct: 1372 EKEMNMVLSFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1431

Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQL---PSYMEGL 1440
            L+DAA  AE D +RGV+ENI+LGQL  +GTG   L L+ E  K  IEL +      M G+
Sbjct: 1432 LMDAASHAEVDPMRGVSENIILGQLPRLGTGCFDLILDAEKCKYGIELPMNIGAGMMGGV 1491

Query: 1441 EFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSP 1500
                  A +P SG       MSP        +++P   AQ +P   G   SP  S G +P
Sbjct: 1492 GMFFGSAATPSSG-------MSP--------QMTPW--AQATPLYSGSGLSP--STGMTP 1532

Query: 1501 SSPGYSPSSPGYSPTSPGYSPTSPGYSPT 1529
              PG+SPS  G S  S G SP   GYSP 
Sbjct: 1533 GGPGFSPS--GASDAS-GMSPG--GYSPV 1556


>gi|324120554|dbj|BAJ78668.1| RNA polymerase II largest subunit [Reticulitermes speratus]
          Length = 1732

 Score = 1709 bits (4425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 886/1643 (53%), Positives = 1136/1643 (69%), Gaps = 100/1643 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDR 62
            F  S A +  V+ VQFGIL+PDEIR+MSV +  I   ET E G+PK  GL DPR G +DR
Sbjct: 3    FLDSKAPLRTVKRVQFGILAPDEIRRMSVTEGGIRFPETYEGGRPKLQGLMDPRQGVMDR 62

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
              +C+TC  N  ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L    + K K
Sbjct: 63   NSRCQTCAGNQTECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFYCSKMLVSPANPKIK 122

Query: 123  QALKIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE----EPLKKNKGGCGAQQP 176
            + +      P+ RL  + D CK K  CEGGDE+D+   + E    +P K+  GGCG  QP
Sbjct: 123  EVVMKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDNDEPNSQQPRKQGHGGCGRYQP 182

Query: 177  KLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
             +   G+ + AE+K     N+D +      E+K +L+AERV  +L+ I+DE+C +LG++ 
Sbjct: 183  NIRRSGLDLTAEWK---HVNEDSQ------EKKISLSAERVWEILRHITDEECYILGMDA 233

Query: 237  KYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPA 286
             +ARPDWMI+ VLP+PP  VRP+          DDLTH+LA II+ N  L R E+ GA A
Sbjct: 234  TFARPDWMIMTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKSNNELVRNEQAGAAA 293

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            H+ISE  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVD
Sbjct: 294  HVISENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 353

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ELV  G    PG   AK
Sbjct: 354  FSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPG---AK 410

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            YI+RD+G+R+DLR+  KSSD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++
Sbjct: 411  YIVRDNGERIDLRFHPKSSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVL 470

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            P+STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGI
Sbjct: 471  PWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 530

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDTL   RK+TKRD F+EK+  MN+LM+   +DGK+PQP I+KP+PLWTGKQVF+LIIP
Sbjct: 531  VQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAIMKPKPLWTGKQVFSLIIP 590

Query: 587  KQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
              +N+ RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+  
Sbjct: 591  GNVNMIRTHSTHPDEEDDGPFKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICM 650

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E+G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I
Sbjct: 651  LELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVI 710

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
            ++A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS
Sbjct: 711  QKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGS 770

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
             INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFF
Sbjct: 771  NINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 830

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+ 
Sbjct: 831  FHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLC 890

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQ 942
               +E Q L ++K+    F+K F+F+   E +      ++ + +L    ++    + E +
Sbjct: 891  GETVEFQNLPTIKLSNKAFEKKFKFDPTNERYLRRIFNEDILKELMGSGDVISELEKEWE 950

Query: 943  KLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            +L  DR  L  +I  SG+S   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V  L
Sbjct: 951  QLVKDREAL-RQIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVSDL 1009

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
             ++  +V G+D LS +A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF
Sbjct: 1010 LKKCIIVAGDDHLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRF 1069

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             Q+ V+PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K+ K 
Sbjct: 1070 QQAQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKRPKA 1129

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PSL+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  Y
Sbjct: 1130 PSLTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVY 1189

Query: 1183 YEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADK 1242
            YEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+K
Sbjct: 1190 YEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEK 1247

Query: 1243 LILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV------------- 1286
            L+LRIRIMN +  K +  +E+    EDD+FL+ IE+NML++M L+G+             
Sbjct: 1248 LVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQT 1307

Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                       +++ V+   DVD  RT SN + EI  VLGIEAV
Sbjct: 1308 DSKKRIIVTDTGEFKAIAEWLLETDGTSMMKVLSERDVDTNRTFSNDICEIFSVLGIEAV 1367

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEE
Sbjct: 1368 RKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEE 1427

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL------QL 1433
            TVD+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  IE+       +
Sbjct: 1428 TVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMSMGAGM 1487

Query: 1434 PSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPT 1493
                       TP+ SP   TP++ G  +P Y+ S     SP          GG +FSP+
Sbjct: 1488 MGGGMFFGSVATPSMSP-HMTPWNQG-ATPAYVSS----WSPGNMLGSGSTPGGPSFSPS 1541

Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTS--PTYSPSSPGYSPTS 1551
            S+   S  SPGYSP SP     S      SP Y P     SP S        S      S
Sbjct: 1542 SASDASGLSPGYSPYSPQPGSPSSPGPAMSP-YIP-----SPVSGMSPSYSPSSPAYAPS 1595

Query: 1552 PAYSPTSPSYSPTSPSYSPTSPS 1574
            P+ +P+SP+YSPTSPSYSPTSP+
Sbjct: 1596 PSLTPSSPNYSPTSPSYSPTSPN 1618


>gi|12642612|gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosphaera
            vacuolata]
          Length = 1746

 Score = 1709 bits (4425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 895/1713 (52%), Positives = 1146/1713 (66%), Gaps = 193/1713 (11%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
            F YS AEV KV+ VQFG+LSPDEIR+MSV +I+     E GKPK  GL DPRLG I R +
Sbjct: 7    FLYSSAEVKKVKAVQFGVLSPDEIRRMSVCEIKFETAFEMGKPKTEGLMDPRLGAIGRDL 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILAD----EDDHK 120
             C+TC  +   CPGHFGH+EL KPMF+IGF    L ++R VCF CSK+L D    + D +
Sbjct: 67   PCKTCHCDEKNCPGHFGHIELVKPMFNIGFFGMTLRVLRCVCFFCSKLLIDPRDPKADFE 126

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
             K+ L+I+N  NRLKK+ + C     C+                      C  +QPK   
Sbjct: 127  VKKVLRIKNRINRLKKVQNLCSKVKICKH---------------------CSNEQPKFAK 165

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EG++  AE+K      DD       +E+KQ ++AE+VL + K ISD+D +++GL+P+++R
Sbjct: 166  EGLQFRAEFKGSA---DDT------MEKKQIVSAEKVLSIFKHISDDDIEIMGLSPQHSR 216

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            P+W IL + P+PPP +RPS          DDLT++L  I+R+N  LR  ER GAPAH ++
Sbjct: 217  PEWFILTLFPVPPPHIRPSVMMDASMRGEDDLTYKLGDIVRNNNALREMERTGAPAHRLN 276

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E   +LQ HI T  +N+LPG PRA Q+SGRPIKSI  RLK KEGR+RGNLMGKRVDFS R
Sbjct: 277  EQIHVLQAHIITIMNNDLPGMPRAHQKSGRPIKSISQRLKGKEGRVRGNLMGKRVDFSGR 336

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVI+PDP + +DQ+GVP +IA+NLTYPE VTP+N+E+++ LV  GP+  PG   AKYI R
Sbjct: 337  TVISPDPNLRLDQVGVPQTIAMNLTYPEVVTPFNVEKMRRLVMNGPNEYPG---AKYIER 393

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
             DG +++L ++K  SD HL  G KV RHL DGD+V+FNRQPSLHKMSIMGHR+K+M YS+
Sbjct: 394  LDGSKVNLAFVKNRSDIHLNNGEKVIRHLLDGDYVIFNRQPSLHKMSIMGHRVKVMRYSS 453

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLS TSPYNADFDGDEMN+HVPQS + RAEV++LMMVP+CIVSPQ N+PVMGIVQDT
Sbjct: 454  FRLNLSCTSPYNADFDGDEMNLHVPQSPQARAEVMQLMMVPRCIVSPQGNKPVMGIVQDT 513

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L+G    T+RDTF+EKD+ MN+L+ +  +DG +P P ILKPR LWTGKQ+F++I+P  +N
Sbjct: 514  LVGTMLFTQRDTFMEKDLVMNLLLHFRGWDGVIPPPAILKPRQLWTGKQLFSMILP-DVN 572

Query: 591  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
            L R +  H D+D  I  AGDT V I +GELLSGT+ K+T+G++  SL+HV W+E GP+ A
Sbjct: 573  LVRFSNTHDDDD--IENAGDTKVLISRGELLSGTVDKRTVGSAANSLVHVTWKEHGPEGA 630

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
               + + Q LVN+WLLQ  FSIGIGDTIAD +T   + + I+KAK  VK L+++AQ+  L
Sbjct: 631  CDLISNIQTLVNHWLLQRGFSIGIGDTIADEQTRFNVIEIINKAKEEVKRLVRKAQEGEL 690

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            +  PG+TMMESFE  VN+VLN ARD++GS AQKSL ++NN+K MV AGSKGSFINISQ+ 
Sbjct: 691  QLLPGKTMMESFETGVNKVLNGARDKSGSDAQKSLLKTNNIKRMVNAGSKGSFINISQIC 750

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQNVEGKRI +GF  RTLPHF  DD GPESRGFVENSYLRGLT  EFFFHAMGGRE
Sbjct: 751  ACVGQQNVEGKRISYGFRRRTLPHFVLDDLGPESRGFVENSYLRGLTATEFFFHAMGGRE 810

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKTSETGYIQRRL+KA+ED+MVKYDGTVRNS G ++QFLYGEDGMD   +E Q 
Sbjct: 811  GLIDTAVKTSETGYIQRRLIKALEDVMVKYDGTVRNSTGLIVQFLYGEDGMDGAMVEDQN 870

Query: 891  LDSLKMKKSEFDKAFR---FEMD---EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
            L +L M  ++ ++ F    F++D    EN   +Y+ QE IDD++   +L    + E  ++
Sbjct: 871  LRTLSMNDAKLEQTFHLDPFDLDFGIGENRR-SYLAQEVIDDVRNDPQLIKALEDEFAQI 929

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
            + DR +L  EI  S +S WPL VN+ RLIWN +  F +     SD++P ++++ V  L  
Sbjct: 930  KLDRDRLQREIIRSRESKWPLAVNIDRLIWNVKTLFNIRQDSVSDLNPRDILKGVQILLS 989

Query: 1005 RLKVVP-------------GED-----------PLSVEAQKNATLFFNILLRSTFASKRV 1040
            R  VV              G+             L+VEAQ+NATL ++I +R+  ASK +
Sbjct: 990  RCNVVALPPKSIKLLDEGDGDQVAEVDTNSVSRQLAVEAQENATLLWSIHIRAFLASKVI 1049

Query: 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
            LKE+RL ++AF  ++GEIE+RFL +   PGEMIG VA QSIGEPATQMTLNTFH+AGVSA
Sbjct: 1050 LKEYRLDKKAFMHLLGEIENRFLHAKCPPGEMIGAVAPQSIGEPATQMTLNTFHFAGVSA 1109

Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATE 1160
            KNVTLGVPRL+EIINVAK  KTPSL+V+L+       ERAK VQ  L++TTL  VT++TE
Sbjct: 1110 KNVTLGVPRLKEIINVAKHCKTPSLTVYLRGEAARDAERAKQVQAELQHTTLNHVTQSTE 1169

Query: 1161 VWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVA 1220
            ++YDP+P  T+IE D E V+SYYE+PD++ +   +SPWLLR+ L++EMM D+KLSM  V 
Sbjct: 1170 IYYDPNPQDTVIEADQELVRSYYELPDDENSSANLSPWLLRLNLSKEMMTDRKLSMNHVK 1229

Query: 1221 EKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDD------VFLKKIE 1274
             KI+ +   D+  + ++DN   L+LRIRI   + P+     E    +      +FL+K+E
Sbjct: 1230 NKIHHDLGGDVNVMASEDNDANLVLRIRIAAQKEPEKMAEGEEHAQEEEEDECLFLRKVE 1289

Query: 1275 SNMLTEMALRGV------------------------------------NLLAVMCHEDVD 1298
             ++L+EM L GV                                    NLLAVM H+DVD
Sbjct: 1290 GSLLSEMNLGGVPDIKKVYMREADRIVPDPRTGGLSVEKEWVLDTDGTNLLAVMSHKDVD 1349

Query: 1299 ARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMA 1358
              RT SN ++E+   LGIE VR ALL+E+R VISFDG+YVNYRHLAIL D MT RGH+M+
Sbjct: 1350 YTRTVSNDVVEMFVTLGIEGVRAALLNEIRGVISFDGAYVNYRHLAILADIMTCRGHIMS 1409

Query: 1359 ITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSL 1418
            ITRHGINR +TG +MRCSFEET DILL+AA++ E D ++GV ENIMLGQ+AP+GTG+  L
Sbjct: 1410 ITRHGINRVETGALMRCSFEETADILLEAAMYGEVDDMKGVAENIMLGQMAPVGTGEFGL 1469

Query: 1419 YLNDEMLKNAIELQ---------LPSYMEGLEFGMTP-ARSPVSGTPY--HDGMMSPGYL 1466
             LN++ LKN I  +         L S   G +   TP A    S TPY    G  +P Y 
Sbjct: 1470 LLNEKALKNLITAEEDARTPRAGLMSPAHGFD---TPRAFDAGSMTPYPATPGQATPSYP 1526

Query: 1467 FSPNLRLSPVTDAQFSPYV----GGMAFSPT-SSPGYS-----PSSPGYSPSSPG----- 1511
            ++P          QFSP+     G  AFSPT +SP Y+      +SP  + +SP      
Sbjct: 1527 YTP-------IGGQFSPFAASPYGDAAFSPTPTSPAYASPYGTAASPFNAMASPYSRAGN 1579

Query: 1512 -----YSPTSPGYSPTSPG----------------------------YSPTSPGYSPTSP 1538
                  SP+SPG    SPG                            YSPTSP YSPTSP
Sbjct: 1580 AFYSPRSPSSPGGVAASPGYSPTSPTYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1639

Query: 1539 TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT 1571
            TYSP+SP YSPTSP YSPTSP YSP+SP+ SP 
Sbjct: 1640 TYSPTSPTYSPTSPTYSPTSPMYSPSSPAMSPA 1672



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/188 (41%), Positives = 102/188 (54%), Gaps = 30/188 (15%)

Query: 1516 SPGYSPTSPGYSPTSP-GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS-YSPTSP 1573
            +P     SP +   +P  +   S T  P++PG +  S  Y+P    +SP + S Y   + 
Sbjct: 1488 TPRAGLMSPAHGFDTPRAFDAGSMTPYPATPGQATPSYPYTPIGGQFSPFAASPYGDAAF 1547

Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP------- 1626
            S +PTSP+Y+  SP  +  SP  +  SP     +  YSP SP+ SP   A SP       
Sbjct: 1548 SPTPTSPAYA--SPYGTAASPFNAMASPYSRAGNAFYSPRSPS-SPGGVAASPGYSPTSP 1604

Query: 1627 ------------------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
                              TSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP YSP
Sbjct: 1605 TYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPTYSPTSPTYSPTSPTYSPTSPMYSP 1664

Query: 1669 TSPGYSPT 1676
            +SP  SP 
Sbjct: 1665 SSPAMSPA 1672



 Score =  104 bits (260), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/190 (41%), Positives = 101/190 (53%), Gaps = 30/190 (15%)

Query: 1544 SPGYSPTSPAYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSP 1601
            +P     SPA+   +P ++   S +  P +P  +  S  Y+P    +SP + S Y   + 
Sbjct: 1488 TPRAGLMSPAHGFDTPRAFDAGSMTPYPATPGQATPSYPYTPIGGQFSPFAASPYGDAAF 1547

Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP------- 1654
            S +PTSPAY+  SP  +  SP  +  SP     +  YSP SPS SP   + SP       
Sbjct: 1548 SPTPTSPAYA--SPYGTAASPFNAMASPYSRAGNAFYSPRSPS-SPGGVAASPGYSPTSP 1604

Query: 1655 ------------------TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
                              TSP+YSPTSPAYSPTSP YSPTSP+YSPTSPTYSPTSP Y+P
Sbjct: 1605 TYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPTYSPTSPTYSPTSPTYSPTSPMYSP 1664

Query: 1697 QSAKYSPSLA 1706
             S   SP+ A
Sbjct: 1665 SSPAMSPARA 1674



 Score = 84.3 bits (207), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 68/185 (36%), Positives = 89/185 (48%), Gaps = 46/185 (24%)

Query: 1579 SPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS-YSPTSP 1636
            +P     SP++   +P ++   S +  P +P  +  S  Y+P    +SP + S Y   + 
Sbjct: 1488 TPRAGLMSPAHGFDTPRAFDAGSMTPYPATPGQATPSYPYTPIGGQFSPFAASPYGDAAF 1547

Query: 1637 SYSPTSPSY-SPTSPSYSPTSPSYSPTSPA----YSPTSP-------------------- 1671
            S +PTSP+Y SP   + SP +   SP S A    YSP SP                    
Sbjct: 1548 SPTPTSPAYASPYGTAASPFNAMASPYSRAGNAFYSPRSPSSPGGVAASPGYSPTSPTYS 1607

Query: 1672 ------------------GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP-SLAYSPSSP 1712
                               YSPTSP+YSPTSPTYSPTSP+Y+P S  YSP S  YSPSSP
Sbjct: 1608 PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPTYSPTSPTYSPTSPTYSPTSPMYSPSSP 1667

Query: 1713 RLSPA 1717
             +SPA
Sbjct: 1668 AMSPA 1672


>gi|341894670|gb|EGT50605.1| hypothetical protein CAEBREN_32550 [Caenorhabditis brenneri]
          Length = 1713

 Score = 1707 bits (4422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 873/1641 (53%), Positives = 1134/1641 (69%), Gaps = 127/1641 (7%)

Query: 10   AEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
            A +  V  VQFGIL P+EI++MSV  +E  E  E GKPK GGL DPR G IDR+ +C TC
Sbjct: 10   APLRTVCRVQFGILGPEEIKRMSVAHVEFPEIYENGKPKLGGLMDPRQGVIDRRGRCMTC 69

Query: 70   TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK--I 127
              N+ +CPGHFGHLELAKP+FHIGF+   L I+R VCF C ++L D+ + +    LK   
Sbjct: 70   AGNLTDCPGHFGHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKSNPRVMDILKKTT 129

Query: 128  RNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPL----KKNKGGCGAQQPKLTIEGM 183
             NPK RL  I D CK+K+ CEG  E+     D  +      KK   GCG  QP     G+
Sbjct: 130  GNPKKRLALIYDLCKSKSVCEGAAELKDEMPDDPDDPMNDSKKIPSGCGRYQPSYRRVGI 189

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
             + AE+K  +  N+D +      ERK  LTAERVL   K+I+DED  ++G++P++ARP+W
Sbjct: 190  DINAEWK--KNVNEDTQ------ERKIMLTAERVLETFKQITDEDILVIGMDPQFARPEW 241

Query: 244  MILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            MI  VLP+PP  VRP+          DDLTH+L+ II+ N+ L+R E NGA AH++++  
Sbjct: 242  MICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDV 301

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
            +LLQ+H+AT  DN +PG P ATQ+ GRP+KSI  RLK KEGRIRGNLMGKRVDFSARTVI
Sbjct: 302  RLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVI 361

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            T DP + ID +GVP +IA NLT+PE VTP+N+++L+ELV  G    PG   AKYIIR++G
Sbjct: 362  TADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPG---AKYIIRENG 418

Query: 414  QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
             R+DLRY  +++D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+STFR+
Sbjct: 419  ARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRM 478

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NLSVTSPYNADFDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQDTL  
Sbjct: 479  NLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCA 538

Query: 534  CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
             R +TKRD FI+    M++LM+   +DGKVPQP ILKP+PLWTGKQVF+LIIP  +N+ R
Sbjct: 539  VRMMTKRDIFIDWSFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLR 598

Query: 594  TAAWHADNDKG----ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
            T + H D++       ++ GDT V IE GELL+G +C KT+G S G+L+HV+  E+G + 
Sbjct: 599  THSTHPDSEDAGPYKWISPGDTKVLIEHGELLTGIVCSKTVGKSAGNLLHVVALELGHEI 658

Query: 650  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
            A  F  H Q ++N WLL+   +IGIGDTIAD +T   I DTI KAK +V ++I++A +  
Sbjct: 659  AANFYSHIQTVINAWLLREGHTIGIGDTIADQETYRDIQDTIRKAKQDVVDIIEKAHNDD 718

Query: 710  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
            LEP PG T+ ++FENKVNQ+LN ARD  GSSAQKSLSE NN K+MV +GSKGS INISQ+
Sbjct: 719  LEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQV 778

Query: 770  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
             ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGR
Sbjct: 779  IACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGR 838

Query: 830  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
            EGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNSL  ++Q  YGEDG+D +W+E+Q
Sbjct: 839  EGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQ 898

Query: 890  TLDSLKMKKSEFDKAFRFEMDEE--------NW-------NPNYMLQEYIDDLKTIKELR 934
             + ++K   + F++ FR     E        NW       +  ++ + Y +D+  ++E++
Sbjct: 899  NMPTMKPNNAVFERDFRVSFGSEKFSAKLTRNWSKIMELTDTKFLRKHYSEDV--VREIQ 956

Query: 935  DVFD------AEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPS 988
            +  D      +E  +LE DR +L  +I   GD+   LP NL+RLIWNAQK FKVD R+P 
Sbjct: 957  ESLDGISLVESEWSQLEEDR-RLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPV 1015

Query: 989  DMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTR 1048
            ++ P+ V+  V +L ++L +V G D +S +AQ NATL  NILLRST  +K++    +L  
Sbjct: 1016 NLSPLHVINGVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNT 1075

Query: 1049 EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVP 1108
            EAF+W++GEIE+RF Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVP
Sbjct: 1076 EAFDWLLGEIETRFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVP 1135

Query: 1109 RLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPM 1168
            RL+EIINV+K++KTPSL+VFL        E+AK+V C LE+TTL+ VT  T ++YDPDP 
Sbjct: 1136 RLKEIINVSKQLKTPSLTVFLTGPAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPK 1195

Query: 1169 GTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFD 1228
             T+I ED E+V  +YEMPD D++  + SPWLLRIEL+R+ MVDKKL+M  +A++I+  F 
Sbjct: 1196 NTVIAEDEEWVSIFYEMPDHDLS--RTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFG 1253

Query: 1229 DDLTCIFNDDNADKLILRIRIMNDE--APKGELNDESAEDDVFLKKIESNMLTEMALRGV 1286
            +D+  I+ DDNA+KL+ R+RI  ++  A   E   +  EDDVFL+ IE+NML+++ L+G+
Sbjct: 1254 NDVHTIYTDDNAEKLVFRLRIAGEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGI 1313

Query: 1287 ----------------------------------------NLLAVMCHEDVDARRTTSNH 1306
                                                     LL V+  + +D  RTTSN 
Sbjct: 1314 PAISKVYMNQPQTDDKKRIIITPEGGFKAVADWILETDGTALLRVLSEQQIDPVRTTSND 1373

Query: 1307 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1366
            + EI EVLGIEAVR+A+  E+  VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR
Sbjct: 1374 ICEIFEVLGIEAVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINR 1433

Query: 1367 NDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLK 1426
             + G +MRCSFEETVDIL++A+V AE D ++GV+ENIMLGQLA  GTG   L L+ E  K
Sbjct: 1434 QEVGALMRCSFEETVDILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCK 1493

Query: 1427 NAIELQLPSYMEGLEFG----------MTPARSPVSG--TPYHDG-MMSPGYLFSPNLRL 1473
            + +E+     M    +G           +P+ SP +   TP ++G   SP    SP+   
Sbjct: 1494 HGMEIPQNVVMGAGFYGNFAGSPSNREYSPSHSPWNSGVTPSYNGAAWSPAGNMSPSAGF 1553

Query: 1474 SPV--TDAQFSPYVGGMAFSPTSSPGYSPSSP----GYSPSSPGYSPTSPG--YSPTSPG 1525
            SP    D   SPY  G         G+SP+ P      SP +P Y   SPG  YSP SPG
Sbjct: 1554 SPAGNMDGGASPYGDG-------GGGWSPAQPDPLGALSPRTPVYGGMSPGGIYSPASPG 1606

Query: 1526 YSPTSPGYSPTSPTYSPSSPG 1546
            +S TSP YSPTSP+YSP+SP 
Sbjct: 1607 FSMTSPHYSPTSPSYSPTSPA 1627



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 66/118 (55%), Gaps = 12/118 (10%)

Query: 1583 SPTSPSYSPT-SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
            SP++  YSP+ SP  S  +PSY+    A+SP     SP S  +SP        SP Y   
Sbjct: 1515 SPSNREYSPSHSPWNSGVTPSYN--GAAWSPAG-NMSP-SAGFSPAGNMDGGASP-YGDG 1569

Query: 1642 SPSYSPTSP----SYSPTSPSYSPTSPA--YSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
               +SP  P    + SP +P Y   SP   YSP SPG+S TSP YSPTSP+YSPTSP+
Sbjct: 1570 GGGWSPAQPDPLGALSPRTPVYGGMSPGGIYSPASPGFSMTSPHYSPTSPSYSPTSPA 1627



 Score = 68.9 bits (167), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 60/114 (52%), Gaps = 11/114 (9%)

Query: 1593 SPSYSPTSPSYSPTSPAYSPT--SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
            SPS    SPS+SP +   +P+    A+SP     SP S  +SP        SP Y     
Sbjct: 1515 SPSNREYSPSHSPWNSGVTPSYNGAAWSPAG-NMSP-SAGFSPAGNMDGGASP-YGDGGG 1571

Query: 1651 SYSPTSP----SYSPTSPAYSPTSPG--YSPTSPSYSPTSPTYSPTSPSYNPQS 1698
             +SP  P    + SP +P Y   SPG  YSP SP +S TSP YSPTSPSY+P S
Sbjct: 1572 GWSPAQPDPLGALSPRTPVYGGMSPGGIYSPASPGFSMTSPHYSPTSPSYSPTS 1625



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 60/115 (52%), Gaps = 23/115 (20%)

Query: 1553 AYSPTSPSYSPT-SPSYSPTSPSY-----SPT-----SPSYSPTSPSYSPTSP------S 1595
            A SP++  YSP+ SP  S  +PSY     SP      S  +SP        SP       
Sbjct: 1513 AGSPSNREYSPSHSPWNSGVTPSYNGAAWSPAGNMSPSAGFSPAGNMDGGASPYGDGGGG 1572

Query: 1596 YSPTSP----SYSPTSPAYSPTSPA--YSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
            +SP  P    + SP +P Y   SP   YSP SP +S TSP YSPTSPSYSPTSP+
Sbjct: 1573 WSPAQPDPLGALSPRTPVYGGMSPGGIYSPASPGFSMTSPHYSPTSPSYSPTSPA 1627



 Score = 67.4 bits (163), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 64/117 (54%), Gaps = 14/117 (11%)

Query: 1639 SPTSPSYSPT-SPSYSPTSPSYSPTSPAYSPT-----SPGYSPTSPSYSPTSPTYSPTSP 1692
            SP++  YSP+ SP  S  +PSY+    A+SP      S G+SP        SP Y     
Sbjct: 1515 SPSNREYSPSHSPWNSGVTPSYN--GAAWSPAGNMSPSAGFSPAGNMDGGASP-YGDGGG 1571

Query: 1693 SYNPQSAKYSPSLAYSPSSP---RLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
             ++P  A+  P  A SP +P    +SP   YSP SP +S TS  YSPTSPSYSP+SP
Sbjct: 1572 GWSP--AQPDPLGALSPRTPVYGGMSPGGIYSPASPGFSMTSPHYSPTSPSYSPTSP 1626



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/137 (38%), Positives = 69/137 (50%), Gaps = 27/137 (19%)

Query: 1609 AYSPTSPAYSPT-SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
            A SP++  YSP+ SP  S  +PSY+    ++SP   + SP S  +SP        SP Y 
Sbjct: 1513 AGSPSNREYSPSHSPWNSGVTPSYN--GAAWSPAG-NMSP-SAGFSPAGNMDGGASP-YG 1567

Query: 1668 PTSPGYSPTSP----SYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPT 1723
                G+SP  P    + SP +P Y   SP              YSP+SP       +S T
Sbjct: 1568 DGGGGWSPAQPDPLGALSPRTPVYGGMSPGG-----------IYSPASP------GFSMT 1610

Query: 1724 SPNYSPTSSSYSPTSPS 1740
            SP+YSPTS SYSPTSP+
Sbjct: 1611 SPHYSPTSPSYSPTSPA 1627



 Score = 61.2 bits (147), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 61/118 (51%), Gaps = 15/118 (12%)

Query: 1674 SPTSPSYSPT-SPTYSPTSPSYNPQ----SAKYSPSLAYSPSSPRLSPASPYSPTSPNYS 1728
            SP++  YSP+ SP  S  +PSYN      +   SPS  +SP+      ASPY      +S
Sbjct: 1515 SPSNREYSPSHSPWNSGVTPSYNGAAWSPAGNMSPSAGFSPAGNMDGGASPYGDGGGGWS 1574

Query: 1729 PTS----SSYSPTSPSYSPSSP--TYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSA 1780
            P       + SP +P Y   SP   YSP+SP      +P YSP+SP YSP+   SP+A
Sbjct: 1575 PAQPDPLGALSPRTPVYGGMSPGGIYSPASP-GFSMTSPHYSPTSPSYSPT---SPAA 1628


>gi|321259651|ref|XP_003194546.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus gattii
            WM276]
 gi|317461017|gb|ADV22759.1| DNA-directed RNA polymerase II largest subunit, putative
            [Cryptococcus gattii WM276]
          Length = 1786

 Score = 1707 bits (4421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 907/1821 (49%), Positives = 1176/1821 (64%), Gaps = 151/1821 (8%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT-ERGKPKPGGLSDPRLGT 59
            M   FPYS A V +V+ +QFGI+SP+EI+  SV +IE  E   E GK K GGL DP++GT
Sbjct: 1    MTVTFPYSSAPVKQVKEIQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGT 60

Query: 60   IDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH 119
            IDR  KC+TC   M+ECPGHFGH+ELA+P+FH GF+  V  I+  VC++C K+  D  D 
Sbjct: 61   IDRNFKCQTCLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDP 120

Query: 120  KFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK-----------KNK 168
                A++    ++RLK I    K+K  CE  DE+D    +G+   +           K  
Sbjct: 121  MVANAVRRIKAQHRLKAIWALAKDKKICEP-DELD-EKDNGDATFEDEYLQEKKATMKGH 178

Query: 169  GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDED 228
            GGCG +QP    +G+K++  +K   K  D+     EP ER   ++   V  +LK+I+ ED
Sbjct: 179  GGCGHEQPVWRKKGLKLLGVWKPTDKGEDEAT---EPEER--NVSPGEVYNILKKITPED 233

Query: 229  CQLLGLNPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLR 277
              ++GLN  YARPDWMIL VLP+PP  VRPS           DDLT++L+ II+ N  +R
Sbjct: 234  LHIMGLNADYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSEDDLTYKLSQIIKFNGVVR 293

Query: 278  RQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIR 337
            R E  G P  +++E   LLQ+H+ TY DN++ G PR  Q+ GR IK+I +RLK KEGR+R
Sbjct: 294  RMEAEGVPPSVVNEQFDLLQYHVCTYMDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMR 353

Query: 338  GNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPH 397
            GNLMGKRVDFSARTVIT DP + +DQ+GVP SIA+ LTYPE VTPYNI  L+ LV  GP 
Sbjct: 354  GNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPA 413

Query: 398  PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 457
              PG   A+Y ++D G+R+DL+Y K      L+ G+ VERHL DGD+VLFNRQPSLHKMS
Sbjct: 414  TYPG---ARYYVKDTGERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHKMS 470

Query: 458  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 517
            +M HR+K+M YSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ ++  VP+ IVSP
Sbjct: 471  MMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSP 530

Query: 518  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTG 577
            Q+N+PVMGIVQDTL G RK T RD F++     +IL+W  ++DG +P P I KP+P+WTG
Sbjct: 531  QANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWDGSIPPPAIFKPKPMWTG 590

Query: 578  KQVFNLIIPKQINLFRTAAWHADNDK-GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGS 636
            KQ+ ++ IPK IN+      + +N+K   +   D  V IE GEL+ GT+ K   G++   
Sbjct: 591  KQLLSMTIPKGINIT-----YKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNG 645

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            L+HVI+ E+G  AAR F    Q +VNYWLL   FS+GIGDTI D  TM  I + + +AK 
Sbjct: 646  LVHVIFRELGHVAARDFFSAVQRVVNYWLLHYGFSVGIGDTIVDKATMAGITNRMVEAKE 705

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
             V+ L+++A+   ++P+PG T+ E+ E  +   LN ARD  G + Q +L   NN+K MV 
Sbjct: 706  AVQKLVQEAEANRMKPKPGMTIRETLEASIAAELNKARDWTGKTTQDNLKADNNVKQMVV 765

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
            +G+KGSFINISQM+  VGQQ VEGKRI FGF  R+LPHF+KDDYGPESRGFVENSYLRGL
Sbjct: 766  SGAKGSFINISQMSGVVGQQFVEGKRIAFGFRHRSLPHFSKDDYGPESRGFVENSYLRGL 825

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
            TPQEF+FHAMGGREGLIDTAVKT+ETGYIQRRLVKAMED+ V YDGTVRNS+ +V+QFLY
Sbjct: 826  TPQEFWFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDLKVAYDGTVRNSVNEVVQFLY 885

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDV 936
            GEDGMD   +E Q+LD +++    F++ ++ ++   N     +LQ  ID  ++   L+ +
Sbjct: 886  GEDGMDGAAMEKQSLDIIRLSDRAFERRYKIDVLGANGFSKGVLQAGID--QSSISLQKL 943

Query: 937  FDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVV 996
             D E  ++  DR+ L +EI   G    PLPVN++R+I N+Q+ F +DPR PSD+ P+ ++
Sbjct: 944  LDEEFAQISEDRHILRSEIYQDGTPGHPLPVNIQRVIQNSQQIFHIDPRVPSDLDPVYLL 1003

Query: 997  EAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIG 1056
            E  + L ERL VV G+D LS  AQKNATL FN+LLRS  A++RVL+E+ L REAF+WVIG
Sbjct: 1004 EQREALAERLLVVRGDDKLSRAAQKNATLVFNMLLRSHLATRRVLEEYHLNREAFDWVIG 1063

Query: 1057 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1116
            E+E  F +++V   EM+G +AAQSIGEPATQMTLNTFHYAGV++K+VT GVPRL+EIINV
Sbjct: 1064 EVEQIFNKAVVNAAEMVGTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINV 1123

Query: 1117 AKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDV 1176
            A  I+TP+L+V+L P  + T+E A  +   L YT LR +T   E++YDP    T IEED 
Sbjct: 1124 AVNIRTPALNVYLDPEYSKTEEDAHQIMRKLTYTRLRDITATVEIFYDPKLDSTDIEEDK 1183

Query: 1177 EFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
            +FV +++ +PDEDI  E  SPWLLR+EL+R  +++    M+ + + I      D+  I +
Sbjct: 1184 DFVDAFFAIPDEDIRLELHSPWLLRLELDRAKVLEGGYEMSQIVDAIADTVGKDVFVIHS 1243

Query: 1237 DDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMAL------------- 1283
            +DNA KL++RIR++ ++  +  L DE    D+FLK+IE  +L ++ L             
Sbjct: 1244 EDNAPKLVIRIRVVAEKEDEELLGDE----DMFLKRIEGTLLDQVELGGITGITRVFISE 1299

Query: 1284 ----------------------RGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                   G+NL  VM  + V+A RT SN+  E+ E LGIEA R 
Sbjct: 1300 GKQVVISQNGEYDQQKEWFLETDGINLKEVMAVDGVNAFRTYSNNCYEVYETLGIEAARN 1359

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            AL  EL  VI   GSYVNYRHLA+LCD M  +G LM+ITRHGINR D G + R +FEETV
Sbjct: 1360 ALYKELNGVIEMGGSYVNYRHLALLCDLMCSKGALMSITRHGINRTDAGALSRAAFEETV 1419

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI-ELQLPSYMEGL 1440
            +ILL+AA   + D  +GV EN++LGQ+AP+GTG   + L+  MLK+ I + +LP      
Sbjct: 1420 EILLEAAAVGDIDDCKGVAENVLLGQMAPMGTGAFDVSLDMNMLKDVIVDHRLPVQNMMA 1479

Query: 1441 EFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP---- 1496
                       + TPY +              LSP+        +G  AFSP  S     
Sbjct: 1480 AGMTGGMTPGGAMTPYDN--------------LSPMWGGDKGA-LGHAAFSPIQSSANDE 1524

Query: 1497 ---------GYSPSSPGYSPSSPGYSPTSP-GYSPTSPGYSPTSPGYSPTSPTYSPSSP- 1545
                     G SP   G SP+  GYSP+SP GYSPTSP ++ TSP YSPTSP    ++  
Sbjct: 1525 GGNFAYMGYGQSPMHGGMSPA--GYSPSSPAGYSPTSP-FAVTSPAYSPTSPFAGAAAGS 1581

Query: 1546 --------GYSPTSPAYSPTSPSYSPTSPSY---------------------------SP 1570
                    GY  TSPAYSPTSP YSPTSP +                           + 
Sbjct: 1582 ASPWVGRGGYGATSPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPASPAYGGAGVGNR 1641

Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA-YSPTSP 1629
             SP YSPTSP+YSPTSP    TSP YSPTSP YSPTSPA+SPTSP+YSPTSPA +  TSP
Sbjct: 1642 ASP-YSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATSP 1700

Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSP 1689
             YSPTSP +SPTSP+YSP SP+YSPTSP YSPTSPAYSPTSP YSPTSP+Y   +P    
Sbjct: 1701 RYSPTSPQFSPTSPTYSPASPAYSPTSPQYSPTSPAYSPTSPAYSPTSPAYGGAAPNGGT 1760

Query: 1690 TSPSYNPQSAKYSPSLAYSPS 1710
                  P    +  +  Y  S
Sbjct: 1761 AQQQNGPARPGWGNAGGYGTS 1781



 Score =  177 bits (448), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 123/271 (45%), Positives = 150/271 (55%), Gaps = 61/271 (22%)

Query: 1553 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPAYS 1611
            A+SP   S +    +++      SP     SP    YSP+SP+ YSPTSP ++ TSPAYS
Sbjct: 1513 AFSPIQSSANDEGGNFAYMGYGQSPMHGGMSPAG--YSPSSPAGYSPTSP-FAVTSPAYS 1569

Query: 1612 PTSPAYSPTSPAYSP--TSPSYSPTSPSYSPTSPSYSPTSPS------------------ 1651
            PTSP     + + SP      Y  TSP+YSPTSP YSPTSP                   
Sbjct: 1570 PTSPFAGAAAGSASPWVGRGGYGATSPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPA 1629

Query: 1652 ---------------YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
                           YSPTSP+YSPTSP    TSP YSPTSP YSPTSP +SPTSPSY+P
Sbjct: 1630 SPAYGGAGVGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSP 1689

Query: 1697 QSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNA 1756
             S        +  +SPR      YSPTSP +SPTS +YSP SP+YSP+SP YSP+SP   
Sbjct: 1690 TSPA-----PFQATSPR------YSPTSPQFSPTSPTYSPASPAYSPTSPQYSPTSPA-- 1736

Query: 1757 GGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
                  YSP+SP YSP+   SP+  G +P+ 
Sbjct: 1737 ------YSPTSPAYSPT---SPAYGGAAPNG 1758



 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 107/236 (45%), Gaps = 81/236 (34%)

Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
            A+SP   S +    +++      SP     SP    YSP+SPA      GYSPTSP ++ 
Sbjct: 1513 AFSPIQSSANDEGGNFAYMGYGQSPMHGGMSPAG--YSPSSPA------GYSPTSP-FAV 1563

Query: 1683 TSPTYSPTSPSYNPQSAKYSPSLA---YSPSSPRLSPASPYSPTSPNYSPTS-------- 1731
            TSP YSPTSP     +   SP +    Y  +SP       YSPTSP YSPTS        
Sbjct: 1564 TSPAYSPTSPFAGAAAGSASPWVGRGGYGATSP------AYSPTSPQYSPTSPQFSPTSP 1617

Query: 1732 -------------------------SSYSPTSPSY------------------------- 1741
                                     S YSPTSP+Y                         
Sbjct: 1618 SFSPSSPTYSPASPAYGGAGVGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTS 1677

Query: 1742 ---SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTP 1793
               SP+SP+YSP+SP      +P YSP+SPQ+SP++  YSP++P YSP+S  QY+P
Sbjct: 1678 PAFSPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSPTYSPASPAYSPTS-PQYSP 1732


>gi|295664232|ref|XP_002792668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
            'lutzii' Pb01]
 gi|226278782|gb|EEH34348.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
            'lutzii' Pb01]
          Length = 1748

 Score = 1707 bits (4421), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 917/1774 (51%), Positives = 1200/1774 (67%), Gaps = 122/1774 (6%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--------ERGKPKPGGLSD 54
             +FPYS A++  ++ +QFG+LSP+EI++MSVV +E+ ET         +R +P+  GL+D
Sbjct: 4    VKFPYSKAQLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMVGAPANDEQRQRPREKGLND 63

Query: 55   PRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILA 114
            PRLGTIDR  +C TC   +  CPGHFGH+EL+ P+FHIGF+  +  ++ +VC NC KI A
Sbjct: 64   PRLGTIDRNWRCATCEEGINGCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKA 123

Query: 115  DEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK--KNKGGCG 172
            + +D K+ +AL+ R+PK R   I    K+   CE     D      +E  K  ++ GGCG
Sbjct: 124  NTNDQKYLEALRFRDPKRRFDAIWRLSKDVLICEADPTPDDDDPFSKEASKPVRSHGGCG 183

Query: 173  AQQPKLTIEGMKMIAEYKAQRKKN--DDQE-QLPEPVERKQTLTAERVLGVLKRISDEDC 229
              QP++  EG+ ++  +K  + ++  DD + Q PE    K+ +T +  L + + IS+ED 
Sbjct: 184  NMQPQIRKEGISLVGTWKPNKNRDMMDDMDIQQPE----KRQITPQMALNIFRNISEEDV 239

Query: 230  QLLGLNPKYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENL 276
            +L+GL+  YARP+WMI+ VLP+PPPPV             R  DDLT++LA I+R N+N+
Sbjct: 240  RLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGSGQRGEDDLTYKLAEIVRANQNV 299

Query: 277  RRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRI 336
             R E+ G+P H++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I  RLK KEGR+
Sbjct: 300  TRCEQEGSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGRL 359

Query: 337  RGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGP 396
            R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPE VTP+NI +L ELV+ GP
Sbjct: 360  RQNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGELVDNGP 419

Query: 397  HPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVERHLNDGDFVLFNRQPSLHK 455
               PG   A+Y+IR  G+R+DLR+ K     + L+ G++VERH+ DGD +LFNRQPSLHK
Sbjct: 420  DIHPG---ARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSLHK 476

Query: 456  MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 515
             S+M HR+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L MVP  IV
Sbjct: 477  ESMMAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIV 536

Query: 516  SPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLW 575
            SPQ N P+MGIVQDTL G  KI +RD F+ K+  MNIL+W  D+DG +PQP ILKPRP W
Sbjct: 537  SPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNILLWVPDWDGVIPQPAILKPRPRW 596

Query: 576  TGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTG 635
            TGKQ+ ++++P  +NL R     A   +      D  V +  GEL+ G   KKT+G + G
Sbjct: 597  TGKQLISMVLPPGLNLLRVDRDRAPRSEKFSPPADGGVLVHGGELMYGMFSKKTVGATGG 656

Query: 636  SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAK 695
             +IH I+ E GP+ A  F    Q +VNYWLL + FSIGIGDTI D  T++ I + +   K
Sbjct: 657  GIIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSIGIGDTIPDLPTIQKIENAVRVRK 716

Query: 696  NNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMV 755
              V  +   A D +LEP PG  + E+FE+KV++ LN ARDEAG+  +KS  + NN   M 
Sbjct: 717  EEVDEITASATDNTLEPLPGMNVRETFESKVSRALNNARDEAGTETEKSFKDLNNAVQMA 776

Query: 756  TAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRG 815
             +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRG
Sbjct: 777  RSGSKGSIINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRG 836

Query: 816  LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 875
            LTP EFFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGDV+QFL
Sbjct: 837  LTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVVQFL 896

Query: 876  YGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQ--EYIDDLKTIK 931
            YGEDG+D   IE+Q +D +K    +F + FR + MD E   +PN + Q  E   D+    
Sbjct: 897  YGEDGLDGAHIENQRVDIIKCSDEKFRERFRVDLMDPERTLSPNVLEQATEIAGDI---- 952

Query: 932  ELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMH 991
            E++   D E ++L  DR       A   D    LP+N++R++ +A+  F++     SD+H
Sbjct: 953  EVQTYLDEEWEQLLKDR-AFMRAAAKEDDEMMQLPINVQRILESAKTIFRIREGAISDLH 1011

Query: 992  PMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAF 1051
            P EV+  V  L +RL VV G+D +S EAQ++ATL F   LRS  A +R++ E+ L + AF
Sbjct: 1012 PAEVIPQVRALLDRLVVVRGDDVISREAQESATLLFKAQLRSRLAFRRLVTEYSLNKLAF 1071

Query: 1052 EWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLR 1111
            + V+G IE+RF +++  PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+
Sbjct: 1072 QHVLGAIENRFSRAMANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 1131

Query: 1112 EIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTI 1171
            EI+NVA  IKTPS++V+        KE AK ++  +E+T+LRSVTEATE++YDPD   T+
Sbjct: 1132 EILNVATHIKTPSMTVYQDSSRAMDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTV 1191

Query: 1172 IEEDVEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDD 1229
            IE D + V+SY+ +P ED+A +  + S WLLRI L+R  ++DK L++  VA +I   +  
Sbjct: 1192 IEADRDMVESYFIIP-EDVADDSSRQSKWLLRIILSRPKLLDKNLTVQDVAMRIKDAYPQ 1250

Query: 1230 DLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLL 1289
            D+  IF+D+NAD+ ++RIR + D     + +D+  E DV LKK+E ++L  + LRGV  +
Sbjct: 1251 DIAVIFSDNNADEQVIRIRQIQDTK---QDDDDDTEYDVTLKKLEGHLLDTLTLRGVAGI 1307

Query: 1290 AV------------------------MCHE-----------------DVDARRTTSNHLI 1308
                                      +C E                  VD  RT SN  +
Sbjct: 1308 ERAFINEKSRVRVLEDGSLHQSSEDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQFV 1367

Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRND 1368
            EI+EV GIEA R ALL EL  V++FDGSYVN+RHLA+L D MT RG LMA+TRHGINR D
Sbjct: 1368 EILEVFGIEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRAD 1427

Query: 1369 TGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNA 1428
            TG +MRCSFEETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+  +YL+  ML   
Sbjct: 1428 TGALMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQNMLMGV 1487

Query: 1429 IELQ---LPSYMEGLEFGMTPARSPVSGTPYHDGMM----SPGYLFSPNLRLSPVTDAQF 1481
            +      + +  +GL  G   A    S +P  D M      P   FSP  +    T A F
Sbjct: 1488 VSSNAGLMTADGKGL-LGDGAATPYDSNSPLQDNMYIGTPDPDSAFSPIRQAGSETPAGF 1546

Query: 1482 SPY-----VGGMAFSPTSSP--GYSPSSP-GYSPSSPGYSPTSPGYSPTSPGYSPTSPGY 1533
            + Y      GG +     SP  GYSPSSP   SP+SP YSP+S GYSPTSPG S TSP +
Sbjct: 1547 TEYQAPGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSS-GYSPTSPGMSITSPRF 1605

Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1591
              +SP +SP+SP ++PTSPAYSPTSP Y  SPTSPSYSPTSP +SPTSP+YSPTSPS+SP
Sbjct: 1606 M-SSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPNYSPTSPSFSP 1664

Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAY-SPTSPAYSPTSPSYSPTSPSYSPTSP-SYSPTS 1649
             SP++SPTSPSYSPTSPA   ++  + SPT    SPTSP Y+PTSP +SPTSP +YSPTS
Sbjct: 1665 ASPAFSPTSPSYSPTSPALGGSTGRHLSPT----SPTSPKYTPTSPGWSPTSPETYSPTS 1720

Query: 1650 PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            P++S      SPTSP   PTSPGYSPTSP++SPT
Sbjct: 1721 PNFSG-----SPTSPG-GPTSPGYSPTSPTFSPT 1748



 Score =  170 bits (430), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 116/234 (49%), Positives = 147/234 (62%), Gaps = 42/234 (17%)

Query: 1574 SYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPA--YSPTSP-AYSPTSPAYSPTSP 1629
            ++SP   + S T   ++   +P +S     +   SP   YSP+SP   SPTSP YSP+S 
Sbjct: 1531 AFSPIRQAGSETPAGFTEYQAPGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSS- 1589

Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY--SPTSPSYSPTSPTY 1687
             YSPTSP  S TSP +  +SP +SP SP ++PTSPAYSPTSPGY  SPTSPSYSPTSP +
Sbjct: 1590 GYSPTSPGMSITSPRFM-SSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGF 1648

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTS-----------SSYS 1735
            SPTSP+Y             SP+SP  SPASP +SPTSP+YSPTS           S  S
Sbjct: 1649 SPTSPNY-------------SPTSPSFSPASPAFSPTSPSYSPTSPALGGSTGRHLSPTS 1695

Query: 1736 PTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY--SPSAGYSPSAPGYSPSS 1787
            PTSP Y+P+SP +SP+SP         YSP+SP +  SP++   P++PGYSP+S
Sbjct: 1696 PTSPKYTPTSPGWSPTSPET-------YSPTSPNFSGSPTSPGGPTSPGYSPTS 1742



 Score =  154 bits (390), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/204 (48%), Positives = 129/204 (63%), Gaps = 21/204 (10%)

Query: 1595 SYSPTSPSYSPTSPAYSP-TSPAYSPTSPAYSPTSPS--YSPTSP-SYSPTSPSYSPTSP 1650
            ++SP   + S T   ++   +P +S     +   SP   YSP+SP + SPTSP YSP+S 
Sbjct: 1531 AFSPIRQAGSETPAGFTEYQAPGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSS- 1589

Query: 1651 SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPS 1710
             YSPTSP  S TSP +  +SPG+SP SP ++PTSP YSPTSP Y             SP+
Sbjct: 1590 GYSPTSPGMSITSPRFM-SSPGFSPASPVFAPTSPAYSPTSPGYQ-----------QSPT 1637

Query: 1711 SPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQ 1769
            SP  SP SP +SPTSPNYSPTS S+SP SP++SP+SP+YSP+SP   G      SP+SP 
Sbjct: 1638 SPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTSPALGGSTGRHLSPTSPT 1697

Query: 1770 YSPSAGYSPSAPGYSPSSTSQYTP 1793
               S  Y+P++PG+SP+S   Y+P
Sbjct: 1698 ---SPKYTPTSPGWSPTSPETYSP 1718


>gi|340924320|gb|EGS19223.1| hypothetical protein CTHT_0058480 [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 1756

 Score = 1707 bits (4420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 915/1786 (51%), Positives = 1190/1786 (66%), Gaps = 171/1786 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            F +S A +  ++ +QFG+LSP+EI+ MSV  I + ET +  R KP+ GGL+DP LG++DR
Sbjct: 6    FAHSSAPLRTIKEIQFGLLSPEEIKAMSVCHILYPETMDETRTKPRDGGLNDPLLGSVDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TCT NM+ECPGHFGH+ELA+P++H GF+K    ++  VC NCS++LAD  D ++ 
Sbjct: 66   QFKCKTCTENMSECPGHFGHIELARPVYHPGFIKRTKKLLEIVCHNCSRVLADRSDPQYA 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQ----------DGEEPLKKNKGGCG 172
             A+KIR+PK R K++ D CK+K +CE     D+P Q          + +E      GGCG
Sbjct: 126  AAMKIRDPKIRFKRVWDICKSKRRCEN----DIPKQAEDGDYNPNGNAQEAPVGGHGGCG 181

Query: 173  AQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLL 232
              QP +  + + + A Y+    ++DD  +  E    K+ +T E  L + +R+ DE+   +
Sbjct: 182  NAQPVIRQQALTLWAHYE---HRDDDGVKTKE----KKIITPEMALNIFRRMRDEEMIDI 234

Query: 233  GLNPKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQ 279
            GLN   ARP+WMI+ V             +      +R  DDLT++L  IIR N N+R+ 
Sbjct: 235  GLNISQARPEWMIITVLPVPPPPVRPSISMDGTGTGLRNEDDLTYKLGDIIRANGNVRQA 294

Query: 280  ERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGN 339
               G+P HII++F  LLQ+H+ATY DN++ GQP+A Q+SGRP+K+I +RLK KEGR+RGN
Sbjct: 295  IAEGSPQHIINDFENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGN 354

Query: 340  LMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 399
            LMGKRVDFSARTVIT D  I++D++GVP SIA  LTYPETVTP+NIERL + V+ GP+  
Sbjct: 355  LMGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPFNIERLTQYVQNGPNEH 414

Query: 400  PGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM 459
            PG   A++++R DG R+DLR+ +++S   LE G+KVERHL DGD+V+FNRQPSLHK S+M
Sbjct: 415  PG---ARFVVRSDGTRIDLRHHRRASSIQLEYGWKVERHLIDGDYVIFNRQPSLHKESMM 471

Query: 460  GHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQS 519
            GHR+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL MVP  IVSPQ 
Sbjct: 472  GHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQR 531

Query: 520  NRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQ 579
            N P+MGIVQDTL G  K+ +RD F+ K+  MN+++W  D+DG +P P ILKPRP WTGKQ
Sbjct: 532  NGPLMGIVQDTLAGVYKMCRRDVFLTKEQVMNLMLWVPDWDGIIPIPAILKPRPRWTGKQ 591

Query: 580  VFNLIIPKQINLFRTA----AWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTG 635
            + ++IIPK INL   +      H   D G+L        I++GE++ G L KK++G S G
Sbjct: 592  IVSMIIPKIINLHMGSDSPDKNHPFKDDGLL--------IQQGEIMYGLLSKKSVGASGG 643

Query: 636  SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAK 695
             ++H+ + E+GP  A  FL   Q +VNYWLL N  SIGIGDTI D KT+E +   I+  K
Sbjct: 644  GIVHLCYNELGPQGAMDFLNGCQRVVNYWLLHNGHSIGIGDTIPDPKTIELVQKHINDEK 703

Query: 696  NNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMV 755
              V+ L K A +  LEP PG  + E+FENKV+  LN ARD+AG++ +KSL + NN   M 
Sbjct: 704  AEVERLTKMATNNELEPLPGMNIRETFENKVSTALNMARDKAGTTTEKSLKDLNNAVTMA 763

Query: 756  TAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRG 815
             +GSKGS INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRG
Sbjct: 764  RSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRG 823

Query: 816  LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 875
            LTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED    YDGTVRNSLGDVIQF+
Sbjct: 824  LTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDAEAHYDGTVRNSLGDVIQFV 883

Query: 876  YGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELR 934
            YGEDG+D + IE Q +D + M    FDK FR + MD E+        EY  ++ +  E++
Sbjct: 884  YGEDGLDGIAIEKQRVDHINMSDKAFDKRFRLDVMDLEHSGRALDALEYGREMASDPEVQ 943

Query: 935  DVFDAEVQKLEADRYQLATEIATS--GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHP 992
             + D E ++L ADR QL  +I     G+ +  LP+N+ R+I NA+K FKVD    SD+ P
Sbjct: 944  SLLDQEYEQLLADR-QLVRQIQRRKMGEENIQLPLNVARIIENAKKLFKVDDTSRSDLTP 1002

Query: 993  MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1052
             +V+ AV  L ER+ VV G+DP+S EA  N+T+ F ILLRS  A KR+  E R+ + AFE
Sbjct: 1003 KDVIPAVRALLERMVVVRGDDPISKEADYNSTILFKILLRSRLAFKRLACEQRINKLAFE 1062

Query: 1053 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1112
             ++GE+E+R+ +S+V PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+E
Sbjct: 1063 HILGELENRWARSMVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKE 1122

Query: 1113 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1172
            I+NVAK IKTPS+ V+L    N+T+E AK ++  +E+T+LRSVT  TE++YDPD   T+I
Sbjct: 1123 ILNVAKDIKTPSMVVYLD-AENATQEDAKKMRNKVEHTSLRSVTAVTEIYYDPDITSTVI 1181

Query: 1173 EEDVEFVKSYYEMPD--EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDD 1230
             ED + V+SY+ +PD  +  + E  S WLLRI L+R+ M+DK L +  VA KI +E+  D
Sbjct: 1182 PEDFDMVESYFLIPDSSDQESIENQSRWLLRITLDRQKMLDKGLRVEDVAHKIKEEYKKD 1241

Query: 1231 LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---- 1286
            +  IF+D+NA+++++RIR++  E  K E   +  EDDV LK++E ++L  + LRGV    
Sbjct: 1242 VAIIFSDNNAEEMVIRIRVVRQEDDKDEDGHKIIEDDVMLKRLEKHLLDNLTLRGVPGIE 1301

Query: 1287 -------NLLAVM-------------CH-----------------EDVDARRTTSNHLIE 1309
                     LAV+             C                  E VD RRT++N L +
Sbjct: 1302 RAFLNKGTKLAVLPDGSQIANKDHPACQEWYLDTQGTALREVLQIEGVDTRRTSTNDLYQ 1361

Query: 1310 IIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1369
            I++V GIEA R ALL EL  V++FDGSYVN+RHLA+L D MTYRG + A+TRHGINR DT
Sbjct: 1362 IVDVFGIEAARAALLQELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADT 1421

Query: 1370 GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI 1429
            G +MRCSFEETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG   + L+ +ML+  I
Sbjct: 1422 GALMRCSFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFDVLLDPKMLETVI 1481

Query: 1430 ELQLPSYMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYL--FSPNLRLSPVTDAQFSP 1483
                 +   GL  GMT     + G  TPY  G  M   GYL  +SP +         FSP
Sbjct: 1482 S---DNSRMGLMPGMTIKGGELEGAATPYDTGSPMADNGYLGSYSPTM-------GNFSP 1531

Query: 1484 YVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSP------GYSPTSP-----GYSPTSP- 1531
              G  + SPT   G+     G+  S+     TSP        SPTSP     GYSP+SP 
Sbjct: 1532 IQGAGSDSPT---GFGTEYGGFGSSTVNPYATSPRATSPFSTSPTSPFGGYGGYSPSSPA 1588

Query: 1532 -GYSPTSPTY-----------------------------SPSSPGYSPTSPAYSPTSPS- 1560
             GYSPTSP                               SP+SP YSPTSP+YSP SP+ 
Sbjct: 1589 AGYSPTSPLIDAGGRYVSSPQFSPSSPSFSPTSPMLRPGSPTSPNYSPTSPSYSPASPAA 1648

Query: 1561 ---YSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-AYSPTS 1614
               YSPTSP    SPTSPSYSPTSP+YSP SP+   TSPSYSP SP++SPTSP AYSPTS
Sbjct: 1649 TRHYSPTSPQQFASPTSPSYSPTSPTYSPASPNLHATSPSYSPASPTWSPTSPDAYSPTS 1708

Query: 1615 PAY--SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSP 1657
            P++  SP   A SPTSP YSPTSP++SP +P   P+S   YSPTSP
Sbjct: 1709 PSFHRSPGQQA-SPTSPGYSPTSPAFSPRTPGRGPSSGDQYSPTSP 1753



 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/252 (40%), Positives = 132/252 (52%), Gaps = 63/252 (25%)

Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP-SYSPTSP--- 1650
            SYSPT  ++SP   A S +   +      +   S + +P + S   TSP S SPTSP   
Sbjct: 1521 SYSPTMGNFSPIQGAGSDSPTGFGTEYGGFG--SSTVNPYATSPRATSPFSTSPTSPFGG 1578

Query: 1651 --SYSPTSPS--YSPTSPAYSPTS-----------------------PGYSPTSPSYSPT 1683
               YSP+SP+  YSPTSP                             PG SPTSP+YSPT
Sbjct: 1579 YGGYSPSSPAAGYSPTSPLIDAGGRYVSSPQFSPSSPSFSPTSPMLRPG-SPTSPNYSPT 1637

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSP------- 1736
            SP+YSP SP+          +  YSP+SP+       SPTSP+YSPTS +YSP       
Sbjct: 1638 SPSYSPASPA---------ATRHYSPTSPQQFA----SPTSPSYSPTSPTYSPASPNLHA 1684

Query: 1737 TSPSYSPSSPTYSPSSPYNAGGGNPDY--------SPSSPQYSPSA-GYSPSAPGYSPSS 1787
            TSPSYSP+SPT+SP+SP      +P +        SP+SP YSP++  +SP  PG  PSS
Sbjct: 1685 TSPSYSPASPTWSPTSPDAYSPTSPSFHRSPGQQASPTSPGYSPTSPAFSPRTPGRGPSS 1744

Query: 1788 TSQYTPQTNRDD 1799
              QY+P + ++D
Sbjct: 1745 GDQYSPTSPQND 1756


>gi|324120562|dbj|BAJ78672.1| RNA polymerase II largest subunit [Anacanthocoris striicornis]
          Length = 1743

 Score = 1707 bits (4420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 882/1616 (54%), Positives = 1124/1616 (69%), Gaps = 98/1616 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRMSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM+ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L      K K+  
Sbjct: 66   CQTCAGNMSECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPSHPKIKEIV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVP--GQD--GEEPLKKNKGGCGAQQPKLT 179
            LK +  P+ RL  + D CK K  CEGGDE+D+   G D  G    K   GGCG  QP L 
Sbjct: 126  LKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDGMDDGGASNRKPGHGGCGRYQPNLR 185

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
              G+++ AE+K     N+D +      E+K +L+AERV  +LK I+DE+C +LG++PK+A
Sbjct: 186  RTGLEVTAEWK---HVNEDGQ------EKKISLSAERVWEILKHITDEECFILGMDPKFA 236

Query: 240  RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RPDWMI+ VLP+PP  VRP+          DDLTH+LA II+ N  L R E +GA  H+I
Sbjct: 237  RPDWMIVTVLPVPPLCVRPAVVMYGSARNQDDLTHKLADIIKCNNELTRNEHSGAATHVI 296

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            +E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSA
Sbjct: 297  AENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 356

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVITPDP + IDQ+GVP +IALN+T+PE VTP+NI+++ ELV  G    PG   AKYI+
Sbjct: 357  RTVITPDPNLRIDQVGVPRTIALNMTFPEIVTPFNIDKMLELVRRGNAQYPG---AKYIV 413

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+S
Sbjct: 414  RDNGERIDLRFHPKPSDLHLQWGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWS 473

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  L + P+ I++PQSN+PVMGIVQD
Sbjct: 474  TFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQSNKPVMGIVQD 533

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK+TKRD F+EK+  MNILM    ++G++P P ILKP+PLWTGKQVF+LIIP ++
Sbjct: 534  TLTAVRKMTKRDVFLEKEQMMNILMHLPGWNGRMPIPAILKPKPLWTGKQVFSLIIPGEV 593

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            N+ RT + H D+ D G    ++ GDT V +E G L+ G LCK +LGTS GSL+H+ + E+
Sbjct: 594  NMIRTHSTHPDDEDNGPYKWISPGDTKVMVEAGRLVMGILCKSSLGTSAGSLLHICFLEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G +    F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A
Sbjct: 654  GHEQCGYFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKQDVIEVIQKA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS IN
Sbjct: 714  HNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHA
Sbjct: 774  ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    
Sbjct: 834  MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEA 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E Q + ++ +   +F+  F+F+   E        ++ + +L    E+    + E ++L 
Sbjct: 894  VEFQKIQTVDLSNKKFENMFKFDASNERHLRKIFTEDVLRELLGSGEVISALEQEWEQLN 953

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L  +I  SG+S   LP NLKR+IWNAQKTFK++ R P+D+ P++V+  V +L E+
Sbjct: 954  RDREAL-RQIFPSGESKVVLPCNLKRMIWNAQKTFKINMRAPTDLSPVKVIGGVRELLEK 1012

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
              +V G D LS +A +NATL F  L+RST  +K V ++ RL+  AFEW++GEIE+RF Q+
Sbjct: 1013 CIIVAGNDHLSKQANENATLLFQCLVRSTLCTKLVSEKFRLSSAAFEWLVGEIETRFKQA 1072

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
               PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL
Sbjct: 1073 QAQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSL 1132

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEM
Sbjct: 1133 TVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEM 1192

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PD D  P +ISPWLLRIEL+R+ M DKKL+M  ++EKIN  F DDL CIFNDDNA+KL+L
Sbjct: 1193 PDFD--PTRISPWLLRIELDRKRMTDKKLTMEQISEKINAGFGDDLNCIFNDDNAEKLVL 1250

Query: 1246 RIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV---------------- 1286
            RIRIMN +  K    +ES    EDD+FL+ IE+NML++M L+G+                
Sbjct: 1251 RIRIMNSDDGKSGEEEESVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSK 1310

Query: 1287 ------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                    +L+ V+   DVD  RT SN + EI  VLGIEAVR++
Sbjct: 1311 KRIIMTETGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKS 1370

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            +  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD
Sbjct: 1371 VEKEMNSVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVD 1430

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEF 1442
            +L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  IE+ +    +G  F
Sbjct: 1431 VLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKEGIEISMTGGADGAYF 1490

Query: 1443 --GMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSP 1500
              G TP  SP S TP+  G  +P    S +        +   P      FSP++      
Sbjct: 1491 GGGSTPQTSP-SRTPWSSG-ATPASASSWSPGGGSSAWSHDQPM-----FSPSTG----- 1538

Query: 1501 SSPGYSPS-SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYS 1555
            S P +SPS SP +  +SP    +SPG    SP YSP  P + PSSP  +PTSP Y 
Sbjct: 1539 SEPSFSPSWSPAHGSSSPSSYISSPG-GGMSPLYSP--PIFGPSSPSATPTSPVYG 1591



 Score = 44.3 bits (103), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 8/96 (8%)

Query: 1536 TSPTYSPSSPGYSPT---SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1592
            TSP+ +P S G +P    S +    S ++S   P +SP++ S    SPS+SP   S SP+
Sbjct: 1498 TSPSRTPWSSGATPASASSWSPGGGSSAWSHDQPMFSPSTGSEPSFSPSWSPAHGSSSPS 1557

Query: 1593 SPSYSP---TSPSYSPTSPAYSPTSPAYSPTSPAYS 1625
            S   SP    SP YSP  P + P+SP+ +PTSP Y 
Sbjct: 1558 SYISSPGGGMSPLYSP--PIFGPSSPSATPTSPVYG 1591



 Score = 43.9 bits (102), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 8/96 (8%)

Query: 1599 TSPSYSPTSPAYSPT---SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1655
            TSPS +P S   +P    S +    S A+S   P +SP++ S    SPS+SP   S SP+
Sbjct: 1498 TSPSRTPWSSGATPASASSWSPGGGSSAWSHDQPMFSPSTGSEPSFSPSWSPAHGSSSPS 1557

Query: 1656 SPSYSP---TSPAYSPTSPGYSPTSPSYSPTSPTYS 1688
            S   SP    SP YSP  P + P+SPS +PTSP Y 
Sbjct: 1558 SYISSPGGGMSPLYSP--PIFGPSSPSATPTSPVYG 1591



 Score = 42.0 bits (97), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 39/96 (40%), Positives = 53/96 (55%), Gaps = 8/96 (8%)

Query: 1578 TSPSYSPTSPSYSPT---SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT 1634
            TSPS +P S   +P    S S    S ++S   P +SP++ +    SP++SP   S SP+
Sbjct: 1498 TSPSRTPWSSGATPASASSWSPGGGSSAWSHDQPMFSPSTGSEPSFSPSWSPAHGSSSPS 1557

Query: 1635 SPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
            S   SP    SP YSP  P + P+SPS +PTSP Y 
Sbjct: 1558 SYISSPGGGMSPLYSP--PIFGPSSPSATPTSPVYG 1591


>gi|323454233|gb|EGB10103.1| hypothetical protein AURANDRAFT_36761 [Aureococcus anophagefferens]
          Length = 1738

 Score = 1707 bits (4420), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 928/1767 (52%), Positives = 1194/1767 (67%), Gaps = 157/1767 (8%)

Query: 77   PGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKK 136
            PGHFGH+ELA+P +H+G++K VL  +R VCF+CS+++AD  D+K + A K +  K RL+ 
Sbjct: 10   PGHFGHIELARPCYHLGYIKEVLMCLRCVCFHCSRLMADPSDYKVQGAQKYKAQK-RLEA 68

Query: 137  ILDACKNKTKCE--GGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMI-AEYKAQR 193
            +   C++K +CE   G E+     DGE+  +    GCGA QP       + I  E++   
Sbjct: 69   MHGLCRSKKRCEFATGAELQQAIMDGEQ--EGAVYGCGALQPTFRRRTAQSIEVEFQP-- 124

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
                D+E +P   +RKQ L+A R   VL+ ISD+D ++LGL+PK+ARP+W+++ VLP+ P
Sbjct: 125  ----DEETIPGTGDRKQILSAHRAYEVLRNISDKDAKMLGLDPKFARPEWLLITVLPVAP 180

Query: 254  PPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT 302
            P VRPS           DDLTHQL  I++ N+ L    R G   H++S+F +LLQ+ +  
Sbjct: 181  PHVRPSIQLSDSNARSEDDLTHQLVNIVKANKTLESLCRAGEANHVVSQFEELLQYKVNA 240

Query: 303  YFDNELPGQP--RATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTIN 360
             FDNE   +   +  QR G+P+K+I  RLK KEGRIRGNLMGKRVDFSARTVIT DP ++
Sbjct: 241  LFDNEANAKDGVQERQRGGKPLKTIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLS 300

Query: 361  IDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRY 420
            IDQ+GVP SIA  LT PE V PYN+  L ELV  GP   PG   A+Y++  DG+R+DLR+
Sbjct: 301  IDQVGVPRSIAKTLTVPERVAPYNVHALMELVRNGPEVWPG---ARYVVHADGRRVDLRF 357

Query: 421  LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP 480
            +K  +D  L  G+ VERHL D D ++FNRQPSLHKMSIM HR+K++ +STFRLNLSVTSP
Sbjct: 358  VKHLNDLALHTGFVVERHLRDDDLIVFNRQPSLHKMSIMAHRVKVLDHSTFRLNLSVTSP 417

Query: 481  YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
            YNADFDGDEMN+HVPQ+   +AE+ +LMMVP+ +VSPQSN+PVMGIVQD+LL   ++T +
Sbjct: 418  YNADFDGDEMNLHVPQNVAAKAELQQLMMVPRNVVSPQSNKPVMGIVQDSLLASARMTSK 477

Query: 541  DTFIEKDVFMNILMW-WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHA 599
            +TFI++D+  NI+MW  +D+DG VPQP ILKP+PLWTGKQ+F+LI+PK +N     A   
Sbjct: 478  ETFIDQDLLFNIVMWVGDDWDGVVPQPAILKPKPLWTGKQIFSLILPK-LNFAGKGARFP 536

Query: 600  DNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW 659
                  L   D  V I+ G L++G + KK+LGTS GSLIHVIW E+G  AA  FL   Q 
Sbjct: 537  KKGGNTLNWSDGEVLIQSGRLVTGVMDKKSLGTSGGSLIHVIWLEMGHVAAMHFLNRVQT 596

Query: 660  LVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMM 719
              N WL+  +FSIGIGD +AD  TM TI   I +AK  VK L+++ Q  +LE +PGRTM+
Sbjct: 597  TTNQWLVNVSFSIGIGDAVADQSTMRTIEKIIDEAKLKVKELVQKGQRGALECQPGRTMI 656

Query: 720  ESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 779
            ESFE  VN+VLN AR  AG S Q+S+SE+NN+K+M  AGSKG+ INISQ+ ACVGQQNVE
Sbjct: 657  ESFEAMVNRVLNAARTSAGLSVQESISEANNVKSMAMAGSKGNDINISQIIACVGQQNVE 716

Query: 780  GKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 839
            GKRIP+GF  RTLPHF KDD GPESRGFVENSYLRGL+PQEF+FHAMGGREGLIDTA KT
Sbjct: 717  GKRIPYGFRRRTLPHFAKDDLGPESRGFVENSYLRGLSPQEFYFHAMGGREGLIDTACKT 776

Query: 840  SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKS 899
            ++TGY+QRRLVK+ME IMVKYDGTVRN+ G+V+QFLYGEDG D VW+E Q   SL +   
Sbjct: 777  AQTGYLQRRLVKSMESIMVKYDGTVRNNQGNVVQFLYGEDGGDGVWVEKQKFASLLLNND 836

Query: 900  EFDKAFRFEMDEENWNPN--------YMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL 951
            E  + +   +D   W+ +         +  +  D  +    L  + + E+++L+ DR  L
Sbjct: 837  ELREHYGVNLD---WDDDGDSVTGGVALALDVADACRQDVALAALLENELEQLQRDRDAL 893

Query: 952  ATEIAT-----SGDSSWPLPVNLKRLIWNAQKTFKVDPR------RPSDMHPMEVVEAVD 1000
                A        D    LPVNL RL+W AQ+ F+  PR       P      + V AVD
Sbjct: 894  RAIFACREPDKDADPFANLPVNLARLVWAAQRQFECGPRLERAQLDPRTDDDADGVAAVD 953

Query: 1001 KLQERLKV-VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
             L    +     EDP         T  F IL+R T A+++   E+RL R AF+W++GEIE
Sbjct: 954  ALVNAGRTETDAEDP---------TALFAILIRCTLAARKCCFEYRLNRAAFDWLMGEIE 1004

Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
            SRF+Q+    GEM G +AAQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL EI+NVAK 
Sbjct: 1005 SRFVQARAHAGEMCGVLAAQSMGEPATQMTLNTFHFAGVSAKNVTLGVPRLNEILNVAKT 1064

Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
            ++TPSL+++L P +   +E+A+ VQ  LE+TTL  VT  T++ YDPD   T++E+D EFV
Sbjct: 1065 VRTPSLTIYLAPEIKDDEEKAREVQAKLEHTTLGDVTTLTQIVYDPDATSTVVEDDREFV 1124

Query: 1180 KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
             +Y ++PDED  P+ +SPW+LR+ELNRE++ DKKL MA VA  I  E+  DL CI+ DDN
Sbjct: 1125 AAYCDVPDEDFDPKAMSPWVLRMELNREVVADKKLRMADVAATIADEYGADLHCIYADDN 1184

Query: 1240 ADKLILRIRIMNDEAPKG------ELNDESAEDD--VFLKKIESNMLTEMALRGV----- 1286
            ADKL+LR+RI +  A  G       L D   +DD   FL++IE NML+++ LRGV     
Sbjct: 1185 ADKLVLRVRIRSGGARAGGDDAAPALGDAEVDDDEWTFLRRIEGNMLSDLRLRGVPRVTK 1244

Query: 1287 -------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLG 1315
                                           NL A++   DVD  RT SN ++EI +V+G
Sbjct: 1245 VYIKKTKMTRWDPDTGALGGDEEWVLETDGTNLAAILGDRDVDHTRTCSNDIVEICDVMG 1304

Query: 1316 IEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRC 1375
            IE  R+ALL  LR VISFDG+YVNYRHLA+LCDTM +RG LMAI+RHGINR D+GP++  
Sbjct: 1305 IEGTRQALLQMLREVISFDGAYVNYRHLAVLCDTMCFRGSLMAISRHGINRGDSGPLLSA 1364

Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLP- 1434
            SFEETV+IL  +AV+A SD + GVT NIMLGQLA +G+G C L L+   L++A+EL+ P 
Sbjct: 1365 SFEETVEILFKSAVYARSDDVDGVTPNIMLGQLAHVGSGVCDLLLDTPQLQHAVELEAPD 1424

Query: 1435 -------------SYMEGLEFGM-TPARSPVSGTPY-------HDGMMSPGYLFSPNLRL 1473
                         ++ +   FG  +PA +P + +P          G  +PG+        
Sbjct: 1425 APAGAAADPATRGAFADAGGFGAPSPAHTPYAASPSGMYGASPARGGATPGW-------- 1476

Query: 1474 SPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPS-SPGYSPTSPGYSPTSPGYSPTSPG 1532
                DA FSP +GG+      SP Y     G SP  SP Y+PTSP YSPTSP YSPTSP 
Sbjct: 1477 ---GDASFSPSIGGV--QSVLSPVY-----GVSPVLSPAYAPTSPAYSPTSPAYSPTSPA 1526

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1592
            YSPTSP YSP+SP YSPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPT
Sbjct: 1527 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT 1586

Query: 1593 SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1652
            SP+YSPTSP+YSPTSPAYSPTSPAYSPTSPAYSPTSP+YSPTSP+YSPTSP+YSP+SP+Y
Sbjct: 1587 SPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPSSPAY 1646

Query: 1653 SPTSPSYSPTSPAYSPTS---PGYSPT-SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYS 1708
            SP+SP+YSP SPAYSPT+   P +  T   SY+P+SP+ + T+P+      +YSP  A S
Sbjct: 1647 SPSSPAYSPGSPAYSPTAYDGPNHGETSPSSYNPSSPSLAGTTPA---GGGEYSPK-ASS 1702

Query: 1709 PSSPRLSPASPYSPTS--PNYSPTSSS 1733
             +    SP+  YSP S    YSPT+ +
Sbjct: 1703 EAGTAYSPSGQYSPDSGGGQYSPTAEA 1729



 Score =  224 bits (571), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 152/302 (50%), Positives = 180/302 (59%), Gaps = 74/302 (24%)

Query: 1546 GYSPTSPAYSPTSPSYSP---TSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTS 1600
            G+   SPA++P + S S     SP+    +P +   S  PS        SP        S
Sbjct: 1444 GFGAPSPAHTPYAASPSGMYGASPARGGATPGWGDASFSPSIGGVQSVLSPVYGVSPVLS 1503

Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
            P+Y+PTSPAYSPTSPAYSPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YS
Sbjct: 1504 PAYAPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1563

Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP- 1719
            PTSPAYSPTSP YSPTSP+YSPTSP YSPTSP             AYSP+SP  SP SP 
Sbjct: 1564 PTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP-------------AYSPTSPAYSPTSPA 1610

Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSP---------------------TYSPSSPYN--- 1755
            YSPTSP YSPTS +YSPTSP+YSP+SP                      YSP++ Y+   
Sbjct: 1611 YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPSSPAYSPSSPAYSPGSPAYSPTA-YDGPN 1669

Query: 1756 ---------------------AGGGNPDYSP-----SSPQYSPSAGYSPSAPG--YSPSS 1787
                                 AGGG  +YSP     +   YSPS  YSP + G  YSP++
Sbjct: 1670 HGETSPSSYNPSSPSLAGTTPAGGG--EYSPKASSEAGTAYSPSGQYSPDSGGGQYSPTA 1727

Query: 1788 TS 1789
             +
Sbjct: 1728 EA 1729


>gi|449303065|gb|EMC99073.1| hypothetical protein BAUCODRAFT_85149 [Baudoinia compniacensis UAMH
            10762]
          Length = 1789

 Score = 1706 bits (4419), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 916/1819 (50%), Positives = 1193/1819 (65%), Gaps = 175/1819 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            FP+S A +  V+ +QFG+ SP+EI+ MSV  IE+ ET   +R +P+  GL+DP+LG+IDR
Sbjct: 6    FPHSDAPLKTVQEIQFGLFSPEEIKNMSVCHIEYPETMDEQRHRPREKGLNDPKLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
              +C TC      CPGHFGH+ELA+P+FH+GF+  +  I+ SVC NC KILADE +  F 
Sbjct: 66   GTQCATCKEVPEICPGHFGHIELAQPVFHVGFIIKIKKILESVCHNCGKILADESNPAFA 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD----GEEP---LK-KNKGGCGAQ 174
            QA+++R+PK R + +   CK  + C+    +D P +D    G +P   LK K  GGCG  
Sbjct: 126  QAIRLRDPKRRFEAVHKICKGISICQ----VDAPPEDDGGYGPDPKAALKVKGHGGCGNA 181

Query: 175  QPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGL 234
            QP +  E +++    K    K+D+ E+  +    K  +T +  L V + ISDE+   LGL
Sbjct: 182  QPIIRKEQLRLNGTIKV--AKSDEDEKGSKAESEKIPITPQYALNVFRAISDEELARLGL 239

Query: 235  NPKYARPDWMILQVLPIPPPPVRPS-------------DDLTHQLAMIIRHNENLRRQER 281
            N  YARP+WM+L VLP+PPP VRPS             DDLT++L+ IIR N N+RR E 
Sbjct: 240  NADYARPEWMVLTVLPVPPPAVRPSISVDGTSQGMRSEDDLTYKLSDIIRANSNVRRCEM 299

Query: 282  NGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLM 341
             G+P H+  EF QLLQFH+ATY DN++ G PRA Q+SGRP+KSI +RLK+KEGR+RGNLM
Sbjct: 300  EGSPQHVTEEFVQLLQFHVATYMDNDIAGVPRALQKSGRPVKSIRARLKSKEGRLRGNLM 359

Query: 342  GKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPG 401
            GKRVDFSARTVIT DP +++DQ+GVP SIA  LT+PETV  YNI++L+ELV  GP+  PG
Sbjct: 360  GKRVDFSARTVITGDPNLDLDQVGVPRSIAKTLTFPETVNAYNIQKLQELVRNGPNEHPG 419

Query: 402  KTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
               A+Y+IR +G+R+DLR  K  +D  L+ G+KVERH+ DGD+++FNRQPSLHK S+MGH
Sbjct: 420  ---ARYVIRGEGERIDLRRAK--NDVQLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGH 474

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
            R+K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL  VPK IVSPQ N 
Sbjct: 475  RVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHETRAEVSELCAVPKNIVSPQKNG 534

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
            P+MGIVQDT+ G   +T+RD  I+ +  MNIL+W  ++DG VPQP IL+P+P+WTGKQ+ 
Sbjct: 535  PLMGIVQDTMAGIYMMTRRDVMIDYENVMNILLWLPNWDGVVPQPAILRPKPMWTGKQII 594

Query: 582  NLIIPKQINLFR-----TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGS 636
            +L +P  +NL R     T        KG+L        ++ G+L+ G   KK +G S G 
Sbjct: 595  SLALPAGLNLQRMDDENTPHIPLKEKKGLL--------VQNGDLVLGRFVKKIVGASQGG 646

Query: 637  LIHVIWEE---VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISK 693
            ++H I+ +    GP AA +F    Q +V YWLL N FS+GIGDT+ +      I   + K
Sbjct: 647  VVHYIFNDNGSEGPKAAVEFFNAAQRVVCYWLLHNGFSVGIGDTVPNQDMANKIEAAVQK 706

Query: 694  AKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKA 753
             K+ +  L+K  ++  LE  PG T+ E+FE+K    L+ AR+ AG  A   +   NN+  
Sbjct: 707  EKDQLLELVKTVENNELETLPGMTIRETFESKAKSFLDNARNNAGDIAFNGMRACNNVGT 766

Query: 754  MVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYL 813
            MV +GSKGS  N+SQMTA VGQQ++EGKR+PFGF  RTLPHF KDDY P SRGFVENSYL
Sbjct: 767  MVQSGSKGSSTNVSQMTAAVGQQSLEGKRLPFGFKYRTLPHFPKDDYSPASRGFVENSYL 826

Query: 814  RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQ 873
            RGLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+E++MVKYDGTVRNS+GD++Q
Sbjct: 827  RGLTPHEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEEVMVKYDGTVRNSMGDIVQ 886

Query: 874  FLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM----DEENWNPNYMLQEYIDDLKT 929
            F+YGEDG+D++ IE QTLD +    + FDK ++ ++     ++    N ML E  D+++ 
Sbjct: 887  FIYGEDGLDAMCIEPQTLDIITASAAAFDKKYKIDIINPASKDLMLTNDML-EMADEIRG 945

Query: 930  IKELRDVFDAEVQKLEADRYQLATEIA-TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPS 988
              +++ +FD E +++  DR ++   +     D S  LP+N+ R+I NA+  FK+     S
Sbjct: 946  DVDVQRLFDEEFEQISNDRDKIRKGLGPDEADQSRQLPLNVDRMIRNAKDRFKIKDGARS 1005

Query: 989  DMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTR 1048
            ++ P   V  + ++ +RL +V G+DPLS+EA  NATL      RS  A KR++K+  L R
Sbjct: 1006 NLDPRYAVPKIKEMLDRLIIVRGDDPLSIEADLNATLLCKANFRSRLAFKRIVKDDSLNR 1065

Query: 1049 EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVP 1108
            +A + ++G+IESRF ++L +PGEM+G +AAQSIGEPATQMTLNTFH AGV+AK  T GVP
Sbjct: 1066 DALDNILGDIESRFSRALASPGEMVGVLAAQSIGEPATQMTLNTFHLAGVTAKTTTKGVP 1125

Query: 1109 RLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPM 1168
            RL+EI+NVA+ +KTP + V+  P    ++E+ K ++  +E+T+LR+VT+ T++ YDPD  
Sbjct: 1126 RLKEILNVAENLKTPQMKVYQLPEDKLSQEKCKELRSKVEHTSLRNVTDETQIHYDPDIT 1185

Query: 1169 GTIIEEDVEFVKSYYEMPDEDIAP-EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEF 1227
             T +EED + V+SY+ +P++   P E  S W+LRI L R  ++DK L++  V   I + F
Sbjct: 1186 STTVEEDRDMVESYFIIPEDSAEPIELQSKWVLRIVLGRRQLLDKGLTVTDVGHAIKEHF 1245

Query: 1228 DDDLTCIFNDDNADKLILRIRIMNDEAPK---GELNDESAEDDVFLKKIESNMLTEMALR 1284
              D   +F+DDNAD+ ++R+R++   A K    E  DES ED   L+++ES+ML  +ALR
Sbjct: 1246 GQDTAVVFSDDNADEQVVRVRLLQRGAGKMDEDEDVDESPED--MLRRLESHMLDSVALR 1303

Query: 1285 GV-----------------------------------------NLLAVMCHEDVDARRTT 1303
            GV                                         NL   +    VD  RTT
Sbjct: 1304 GVKNVKRCFVSSETVMREKPDGSLVKSKSDDLCKEWLLDTDGFNLKETLSVTGVDPTRTT 1363

Query: 1304 SNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHG 1363
             NH  EI    GIEA R AL+ EL  V++ DGSYVNYRH+AILCD M  RG LMA+TRHG
Sbjct: 1364 CNHFGEIFRCFGIEATRAALMRELSAVLTGDGSYVNYRHMAILCDVMCARGTLMAVTRHG 1423

Query: 1364 INRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE 1423
            INR DTG +MRCSFEETV+IL +AA   E D  RGV+ENI+LGQLAP GTG+  + L+ E
Sbjct: 1424 INRADTGALMRCSFEETVEILFEAASSGELDDCRGVSENIILGQLAPSGTGEFDILLDQE 1483

Query: 1424 MLKNAIELQLPSYMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYLFSPNLR--LSPVT 1477
            MLK  +  Q P     +      A SP+ G  TPY  G  +   GY   P+     SP+ 
Sbjct: 1484 MLKTVVSAQRP-----IGAAAMGAASPMDGAATPYDMGSPLAEGGYAGGPDYSASFSPII 1538

Query: 1478 DA----------------QFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 1521
            DA                  SPY GGM      SPGY+P+SP     S G SPTSPGY  
Sbjct: 1539 DAGQADSGGLTGYGGGFGGASPYSGGM------SPGYAPTSP----FSSGMSPTSPGY-- 1586

Query: 1522 TSPGYSPTSP-GYSPTSPTY-SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY---- 1575
               GYSPTSP GYSPTSP +   +SP Y  TSP +SP SP+Y+PTSP+YSPTSP Y    
Sbjct: 1587 ---GYSPTSPAGYSPTSPGFDGATSPVYHVTSPRFSPASPAYTPTSPTYSPTSPVYHGGN 1643

Query: 1576 ----------------SPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPAYSPTSPA 1616
                            SPTSP+YSPTSP+YSPTSP++ P   TSP YSPTSP YSPTSP 
Sbjct: 1644 KVSPTSPSYSPTSPSYSPTSPNYSPTSPNYSPTSPAHQPGSATSPKYSPTSPQYSPTSPQ 1703

Query: 1617 YSPTSPAYSPTSPSYSPTSPSY-SPTSPS-YSPTSPSYSPTSPSYSPTSPA---YSPTSP 1671
            YSPTSP YSPTSP+YSPTSP Y S   PS  SPTSP+YSPTSP YSPTSPA   YSPTSP
Sbjct: 1704 YSPTSPQYSPTSPTYSPTSPKYGSGVGPSGTSPTSPNYSPTSPVYSPTSPAVNGYSPTSP 1763

Query: 1672 GYSPTSPSYSPTSPTYSPT 1690
            G+S  +P YSPTSP YSPT
Sbjct: 1764 GHSGNNPKYSPTSPQYSPT 1782



 Score =  144 bits (363), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 116/281 (41%), Positives = 138/281 (49%), Gaps = 104/281 (37%)

Query: 1616 AYSPTSPAYSP------------------------------------------------- 1626
            A SP   A +P                                                 
Sbjct: 1502 AASPMDGAATPYDMGSPLAEGGYAGGPDYSASFSPIIDAGQADSGGLTGYGGGFGGASPY 1561

Query: 1627 ---TSPSYSPTSP---SYSPTSP--SYSPTSPS-YSPTSPSY-SPTSPAYSPTSPGYSPT 1676
                SP Y+PTSP     SPTSP   YSPTSP+ YSPTSP +   TSP Y  TSP +SP 
Sbjct: 1562 SGGMSPGYAPTSPFSSGMSPTSPGYGYSPTSPAGYSPTSPGFDGATSPVYHVTSPRFSPA 1621

Query: 1677 SPSYSPTSPTYSPTSPSYN--------------PQSAKYSPSLAYSPSSPRLSPASP--- 1719
            SP+Y+PTSPTYSPTSP Y+                 +    S  YSP+SP  SP SP   
Sbjct: 1622 SPAYTPTSPTYSPTSPVYHGGNKVSPTSPSYSPTSPSYSPTSPNYSPTSPNYSPTSPAHQ 1681

Query: 1720 --------YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP-YNAGGG-------NPDY 1763
                    YSPTSP YSPTS  YSPTSP YSP+SPTYSP+SP Y +G G       +P+Y
Sbjct: 1682 PGSATSPKYSPTSPQYSPTSPQYSPTSPQYSPTSPTYSPTSPKYGSGVGPSGTSPTSPNY 1741

Query: 1764 SPSSPQYSPSA----GYSPSAPG-------YSPSSTSQYTP 1793
            SP+SP YSP++    GYSP++PG       YSP+S  QY+P
Sbjct: 1742 SPTSPVYSPTSPAVNGYSPTSPGHSGNNPKYSPTS-PQYSP 1781



 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/222 (45%), Positives = 125/222 (56%), Gaps = 27/222 (12%)

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTS 1642
            S S+SP   +    S   +     +   SP     SP Y+PTSP     SPTSP Y    
Sbjct: 1531 SASFSPIIDAGQADSGGLTGYGGGFGGASPYSGGMSPGYAPTSPFSSGMSPTSPGYG--- 1587

Query: 1643 PSYSPTSPS-YSPTSPSY-SPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP-QSA 1699
              YSPTSP+ YSPTSP +   TSP Y  TSP +SP SP+Y+PTSPTYSPTSP Y+     
Sbjct: 1588 --YSPTSPAGYSPTSPGFDGATSPVYHVTSPRFSPASPAYTPTSPTYSPTSPVYHGGNKV 1645

Query: 1700 KYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSP---TSPSYSPSSPTYSPSSPYNA 1756
              +       S      +  YSPTSPNYSPTS ++ P   TSP YSP+SP YSP+SP   
Sbjct: 1646 SPTSPSYSPTSPSYSPTSPNYSPTSPNYSPTSPAHQPGSATSPKYSPTSPQYSPTSP--- 1702

Query: 1757 GGGNPDYSPSSPQYSPSA-GYSPSAP----GYSPSSTSQYTP 1793
                  YSP+SPQYSP++  YSP++P    G  PS TS  +P
Sbjct: 1703 -----QYSPTSPQYSPTSPTYSPTSPKYGSGVGPSGTSPTSP 1739


>gi|324120556|dbj|BAJ78669.1| RNA polymerase II largest subunit [Thrips palmi]
          Length = 1708

 Score = 1705 bits (4416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 891/1626 (54%), Positives = 1148/1626 (70%), Gaps = 103/1626 (6%)

Query: 23   LSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHF 80
            LSPDEIR+MSV +  I++ ET E G+PK GGL DPR G IDR  +C+TC  NM ECPGHF
Sbjct: 1    LSPDEIRRMSVTEGGIKYAETMEGGRPKLGGLMDPRQGVIDRSSRCQTCAGNMTECPGHF 60

Query: 81   GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-ALKIR-NPKNRLKKIL 138
            GH++LAKP+FH+GF+   + I+R VCF CSK+L   ++ K K+  +K +  P+ RL  + 
Sbjct: 61   GHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPNNPKIKEIVMKSKGQPRKRLTFVY 120

Query: 139  DACKNKTKCEGGDEIDV-------PGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKA 191
            D CK K  CEGGDE+D+       PG+  E+  K+  GGCG  QP L   G+ + AE+K 
Sbjct: 121  DLCKGKHICEGGDEMDMNKDNPDDPGK--EQQRKQGHGGCGRYQPNLRRVGLDVSAEWK- 177

Query: 192  QRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPI 251
                N+D +      E+K  LTAERV  +LK I+DE+C +LG++PK+ARPDWMI+  LP+
Sbjct: 178  --HINEDSQ------EKKIALTAERVWEILKHITDEECFILGMDPKFARPDWMIVTCLPV 229

Query: 252  PPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIA 301
            PP  VRP+          DDLTH+L+ I++ N  L R E+ GA  H+++E  ++LQFH+A
Sbjct: 230  PPLCVRPAVVMYGSARNQDDLTHKLSDILKANNELLRNEQAGAATHVLAENIKMLQFHVA 289

Query: 302  TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 361
            T  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + I
Sbjct: 290  TLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRI 349

Query: 362  DQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYL 421
            DQ+GVP SIA NLT+PE VTP+NI++++ELV  G    PG   AKYI+RD+G+R+DLR+ 
Sbjct: 350  DQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPG---AKYIVRDNGERIDLRFH 406

Query: 422  KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPY 481
             K+SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+STFR+NLS TSPY
Sbjct: 407  PKTSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPY 466

Query: 482  NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRD 541
            NADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL   RK+TKRD
Sbjct: 467  NADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANQPVMGIVQDTLTAVRKMTKRD 526

Query: 542  TFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN 601
             F+EK+  M +LM+   +DGK+PQP ILKP+PLWTGKQ+F+LIIP  +NL RT + H D 
Sbjct: 527  VFLEKEQMMTLLMFLPIWDGKMPQPCILKPKPLWTGKQLFSLIIPGNVNLIRTHSTHPDE 586

Query: 602  -DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHT 657
             D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+HVI+ E+G +   +F G+ 
Sbjct: 587  EDDGPYKWISPGDTKVMVEHGELVKGILCKKTLGTSPGSLLHVIFLELGHEVCGQFYGNI 646

Query: 658  QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
            Q +VN WLL    SIGIGDTIAD +T   I + I KAK +V  +I++A +  LEP PG T
Sbjct: 647  QTVVNNWLLLEGHSIGIGDTIADRQTYSEIQNAIKKAKADVIEVIQKAHNMELEPTPGNT 706

Query: 718  MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
            + ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INISQ+ ACVGQQN
Sbjct: 707  LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQN 766

Query: 778  VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
            VEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAV
Sbjct: 767  VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 826

Query: 838  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
            KT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E Q L ++K+ 
Sbjct: 827  KTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGETVEFQFLSTIKLA 886

Query: 898  KSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIAT 957
               F++ F+F+   E        ++ + +L    E+    + E ++L  DR  L  +I  
Sbjct: 887  NKAFERKFKFDPTNERTLRRIFNEDVMKELMGSGEVVSELEKEWEQLCKDRESL-RQIFP 945

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            SG +   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V +L ++  +V GED LS 
Sbjct: 946  SGTNKVALPCNLQRMIWNVQKIFHINKRAPTDLSPIRVIKGVQELLQKCVIVAGEDRLSK 1005

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
             A +NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+  +PGEM+G +A
Sbjct: 1006 MANENATLLFQCLVRSTLCTKCVGEEFRLSSEAFEWLIGEIETRFQQAQCSPGEMVGALA 1065

Query: 1078 AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTK 1137
            AQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VFL        
Sbjct: 1066 AQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLSGVAARDA 1125

Query: 1138 ERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISP 1197
            E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD D  P +ISP
Sbjct: 1126 EKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFD--PTRISP 1183

Query: 1198 WLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKG 1257
            WLLRIEL+R+ M DKKL+M  +AEKIN  F +DL CIFNDDNA+KL+LRIRIMN +  K 
Sbjct: 1184 WLLRIELDRKRMTDKKLTMEQIAEKINAGFGEDLNCIFNDDNAEKLVLRIRIMNSDDSKF 1243

Query: 1258 ELNDESA---EDDVFLKKIESNMLTEMALRGV---------------------------- 1286
            +  +E     EDD+FL+ IE+NML++M L+G+                            
Sbjct: 1244 QDEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITETGEFK 1303

Query: 1287 ------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1334
                        +L+ V+   DVD  RT SN + EI +VLGIEAVR+++  E+  V+SF 
Sbjct: 1304 AIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVLSFY 1363

Query: 1335 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1394
            G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA  AE D
Sbjct: 1364 GLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVD 1423

Query: 1395 YLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQL-----PSYMEGLEFGMTPARS 1449
             +RGV+ENI++GQL  +GTG   L L+ E  K  IE+ +          G+ FG   + S
Sbjct: 1424 PMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKYGIEIPMNIGVGMGMGGGMLFGSAASPS 1483

Query: 1450 PVSGTPYHD-GMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPS 1508
                TP++  G    G ++SP++      D+  +P   G+AFSP++S   S  SP Y+ S
Sbjct: 1484 SPQMTPWNQAGTPMYGSVWSPHI------DSGMTP--AGIAFSPSASSDASGLSPAYAWS 1535

Query: 1509 SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY 1568
                SP SPG S +   Y P SPG    SP+YSPSSP Y+PTSP+ +  SP+YSPTSPSY
Sbjct: 1536 PTPGSPGSPGPSMSP--YIPASPG-GARSPSYSPSSPAYAPTSPSMA-ASPNYSPTSPSY 1591

Query: 1569 SPTSPS 1574
            SPTSP+
Sbjct: 1592 SPTSPN 1597



 Score = 49.3 bits (116), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 71/120 (59%), Gaps = 15/120 (12%)

Query: 1553 AYSPTSPSYSPTSPSYSPTSPS-YSPTSPS-YSPTSPSYSPTSPS-YSPTSPSYS----- 1604
            A SP+SP  +P + + +P   S +SP   S  +P   ++SP++ S  S  SP+Y+     
Sbjct: 1479 AASPSSPQMTPWNQAGTPMYGSVWSPHIDSGMTPAGIAFSPSASSDASGLSPAYAWSPTP 1538

Query: 1605 PTSPAYSPTSPAYSPTSPAYS------PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
             +  +  P+   Y P SP  +      P+SP+Y+PTSPS +  SP+YSPTSPSYSPTSP+
Sbjct: 1539 GSPGSPGPSMSPYIPASPGGARSPSYSPSSPAYAPTSPSMA-ASPNYSPTSPSYSPTSPN 1597



 Score = 48.1 bits (113), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 58/117 (49%), Gaps = 29/117 (24%)

Query: 1520 SPTSPGYSPTSPGYSPT-SPTYSPS-SPGYSPTSPAYSPTSPS-YSPTSPSYS------- 1569
            SP+SP  +P +   +P     +SP    G +P   A+SP++ S  S  SP+Y+       
Sbjct: 1481 SPSSPQMTPWNQAGTPMYGSVWSPHIDSGMTPAGIAFSPSASSDASGLSPAYAWSPTPGS 1540

Query: 1570 -----PTSPSYSPTSPSYS-------------PTSPSYSPTSPSYSPTSPSYSPTSP 1608
                 P+   Y P SP  +             PTSPS +  SP+YSPTSPSYSPTSP
Sbjct: 1541 PGSPGPSMSPYIPASPGGARSPSYSPSSPAYAPTSPSMA-ASPNYSPTSPSYSPTSP 1596



 Score = 47.8 bits (112), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 60/117 (51%), Gaps = 29/117 (24%)

Query: 1576 SPTSPSYSPTSPSYSPTSPS-YSPTSPS-YSPTSPAYSPTSPA-YSPTSPAYS------- 1625
            SP+SP  +P + + +P   S +SP   S  +P   A+SP++ +  S  SPAY+       
Sbjct: 1481 SPSSPQMTPWNQAGTPMYGSVWSPHIDSGMTPAGIAFSPSASSDASGLSPAYAWSPTPGS 1540

Query: 1626 -----PTSPSYSPTSPSYS-------------PTSPSYSPTSPSYSPTSPSYSPTSP 1664
                 P+   Y P SP  +             PTSPS +  SP+YSPTSPSYSPTSP
Sbjct: 1541 PGSPGPSMSPYIPASPGGARSPSYSPSSPAYAPTSPSMA-ASPNYSPTSPSYSPTSP 1596



 Score = 47.4 bits (111), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 15/118 (12%)

Query: 1541 SPSSPGYSPTSPAYSPTSPS-YSPTSPS-YSPTSPSYSPTSPS-YSPTSPSYS-----PT 1592
            SPSSP  +P + A +P   S +SP   S  +P   ++SP++ S  S  SP+Y+      +
Sbjct: 1481 SPSSPQMTPWNQAGTPMYGSVWSPHIDSGMTPAGIAFSPSASSDASGLSPAYAWSPTPGS 1540

Query: 1593 SPSYSPTSPSYSPTSPAYS------PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
              S  P+   Y P SP  +      P+SPAY+PTSP+ + + P+YSPTSPSYSPTSP+
Sbjct: 1541 PGSPGPSMSPYIPASPGGARSPSYSPSSPAYAPTSPSMAAS-PNYSPTSPSYSPTSPN 1597



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 29/117 (24%)

Query: 1597 SPTSPSYSPTSPAYSPT-SPAYSP-TSPAYSPTSPSYSPTSPS-YSPTSPSYS------- 1646
            SP+SP  +P + A +P     +SP      +P   ++SP++ S  S  SP+Y+       
Sbjct: 1481 SPSSPQMTPWNQAGTPMYGSVWSPHIDSGMTPAGIAFSPSASSDASGLSPAYAWSPTPGS 1540

Query: 1647 -----PTSPSYSPTSPSYS-------------PTSPAYSPTSPGYSPTSPSYSPTSP 1685
                 P+   Y P SP  +             PTSP+ +  SP YSPTSPSYSPTSP
Sbjct: 1541 PGSPGPSMSPYIPASPGGARSPSYSPSSPAYAPTSPSMA-ASPNYSPTSPSYSPTSP 1596



 Score = 44.7 bits (104), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 65/119 (54%), Gaps = 5/119 (4%)

Query: 1616 AYSPTSPAYSPTSPSYSPTSPS-YSPTSPS-YSPTSPSYSPTSPS-YSPTSPAYSPTSPG 1672
            A SP+SP  +P + + +P   S +SP   S  +P   ++SP++ S  S  SPAY+ +   
Sbjct: 1479 AASPSSPQMTPWNQAGTPMYGSVWSPHIDSGMTPAGIAFSPSASSDASGLSPAYAWSP-- 1536

Query: 1673 YSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS 1731
               +  S  P+   Y P SP      +    S AY+P+SP ++ +  YSPTSP+YSPTS
Sbjct: 1537 TPGSPGSPGPSMSPYIPASPGGARSPSYSPSSPAYAPTSPSMAASPNYSPTSPSYSPTS 1595


>gi|67517057|ref|XP_658413.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
 gi|40746483|gb|EAA65639.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
 gi|259488909|tpe|CBF88741.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
            [Source:UniProtKB/TrEMBL;Acc:Q873Q6] [Aspergillus
            nidulans FGSC A4]
          Length = 1745

 Score = 1704 bits (4412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 910/1755 (51%), Positives = 1193/1755 (67%), Gaps = 119/1755 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            FPYS A +  +  +QFG+ SP+EI++MSVV +E+ ET   +R +P+  GL+DPRLGTIDR
Sbjct: 6    FPYSKAPLRTIAEIQFGLFSPEEIKRMSVVHVEYPETMDDQRQRPRTKGLNDPRLGTIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            +  CETC     ECPGHFGH+ELA P+FHIGF+  +  ++ +VC NC KI A+  D KF 
Sbjct: 66   QWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKANTSDPKFL 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGD--EIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
             AL+IR+PK R   I    K+   CE     E D  G++  +P++ + GGCG  QP +  
Sbjct: 126  DALRIRDPKRRFDHIWRLSKDILICEADPPPEDDEYGKESSKPVRLH-GGCGNAQPTVRK 184

Query: 181  EGMKMIAEYKAQRKKNDDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
            EG+ ++  +K  +   D+ + Q PE    K+ +T +  L + + IS ED +++GL+  YA
Sbjct: 185  EGITLVGTWKPSKSMMDEMDMQQPE----KKIITPQMALNIFRNISHEDVRIMGLSNDYA 240

Query: 240  RPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
            RP+WMIL VLP+PPPPV             R  DDLT++LA I+R N+N++R E+ GAP 
Sbjct: 241  RPEWMILTVLPVPPPPVRPSVVVGGSTSGQRGEDDLTYKLAEIVRANQNVQRCEQEGAPE 300

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            H++ EF  LLQ+HIATY DN++ GQP+A Q+S RP+K+I SRLK KEGR+R NLMGKRVD
Sbjct: 301  HVVREFESLLQYHIATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVD 360

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP +++D++GVP SIA  LTYPE VTPYNIE+L++LV  GP+  PG   A+
Sbjct: 361  FSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNGPNEHPG---AR 417

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            YI+RD+G+R+DLR+ K++    L  G+KVERHL DGD +LFNRQPSLHK S+MGHR+++M
Sbjct: 418  YIVRDNGERIDLRHAKRAGGQQLLYGWKVERHLMDGDVILFNRQPSLHKESMMGHRVRVM 477

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            PYSTFRLNLSVTSPYNADFDGDEMN+HVPQS E+RAE+ +L +VP+ IVSPQ N P+MGI
Sbjct: 478  PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEESRAELQQLALVPQNIVSPQRNGPLMGI 537

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDTL G  KI +RD F+ K+  MNI+MW  D+DG +P P I KPRP WTGKQ+ +++ P
Sbjct: 538  VQDTLCGIYKICRRDVFLTKEQVMNIMMWVPDWDGVIPPPAIFKPRPRWTGKQMISMVFP 597

Query: 587  KQINLFRT---AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
              +NL RT    A  +      L  G+ L  I +G+L+ G L KK +G S G +IH+I+ 
Sbjct: 598  SGLNLMRTDSKGAAPSSEKYSPLQDGNVL--IHEGQLMYGMLNKKIVGASGGGVIHIIFN 655

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
            E G DAA  F    Q +VNYWLL N FSIGIGDTI + +T++ I + + K K  V+ +  
Sbjct: 656  EYGADAAVAFFNGAQAIVNYWLLHNGFSIGIGDTIPNDQTIQAIEECVRKRKLEVEEITA 715

Query: 704  QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
             A    LEP PG  + E+FE+KV+  LNTARDEAG++ +KSL + NN   M  +GSKGS 
Sbjct: 716  TATQNKLEPLPGMNVRETFESKVSVALNTARDEAGTATEKSLKDLNNAVQMSRSGSKGSI 775

Query: 764  INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
            INISQMTA VGQQ VEGKRI FGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFF
Sbjct: 776  INISQMTAVVGQQMVEGKRIAFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFF 835

Query: 824  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
            HAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD+IQF+YGEDG+D 
Sbjct: 836  HAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDG 895

Query: 884  VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
              IE Q +D L     +F + FR ++ +   +    + E  +++    E++   D E ++
Sbjct: 896  AHIEHQKVDILTCSDEKFKERFRIDLMDPALSLGPDVLEQANEIAGDVEVQRYLDQEWEE 955

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            L   R ++   +A   + S PLP+N++R++  A+ TF++     SD+HP EV+  V  L 
Sbjct: 956  LLKAR-EVVRHVAKGTEDSMPLPINIQRILEMARTTFRIREGTMSDLHPAEVIPQVQSLL 1014

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
            +RL +V G+DP+S EAQ++AT+ F   LRS  A KR++ ++ + + AF+ V+G IESRF 
Sbjct: 1015 DRLVIVRGDDPISKEAQESATMLFKAQLRSRLAFKRLVTQYSMNKLAFQHVLGAIESRFA 1074

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            ++  APGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA  IKTP
Sbjct: 1075 KAAAAPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTP 1134

Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
            S++V+ +P     KE AK ++ A+EYT LRS+TEATE++YDPD   T+IE D + V+SY+
Sbjct: 1135 SMTVYQEPERAHDKEGAKQLRSAVEYTNLRSITEATEIYYDPDIQTTVIENDRDMVESYF 1194

Query: 1184 EMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
             +P ED+  +  + S WLLRI L+R  ++DK L++  VA KI Q +  D+  IF+D+NAD
Sbjct: 1195 IIP-EDVNDDSSRQSKWLLRIILSRAKLLDKGLTVQDVATKIKQAYPRDIAVIFSDNNAD 1253

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            + ++RIR +  +  K + +D+  E DV LKK+E ++L  + LRGV               
Sbjct: 1254 EQVIRIRQI--QDYKEDEDDDDIEYDVTLKKLEQHLLDTLNLRGVPGVERAFINEKKKIR 1311

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                      +L  V+    VDA RT SN  IE+ EV GIEA R
Sbjct: 1312 VQEDGALTDEQSDPLCREWILETSGSSLAEVLAIPGVDATRTYSNQFIEVFEVFGIEAAR 1371

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             A+L E  VV+SFDGSYVN+RHLA+L D MT RG+L  +TRHGINR D G +MRCSFEET
Sbjct: 1372 AAVLREFTVVLSFDGSYVNHRHLALLVDVMTMRGYLTPVTRHGINRADNGALMRCSFEET 1431

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA F E D  RGV+EN++LGQ+AP GTG+  +YL+  ML   +       + G 
Sbjct: 1432 VEILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDIYLDQNMLNTVVSNNARYGVMGA 1491

Query: 1441 EFGMTPARSPVSGTPYHDG--MMSPGYLFS--PNLRLSPVTDA---------QFSPYVGG 1487
                    S  + T Y  G  M    Y+ +  P+   SP+  A         ++ P  G 
Sbjct: 1492 LGAKDAIISDGAATQYDTGSPMQESAYIGTPDPDSNFSPIRQAGAETPGGFTEYQPSGGF 1551

Query: 1488 MAFSP--TSSPGYSPSSP-GYSPSSPGYSP-------------TSPGYSPTSPGYSPTSP 1531
              FSP  TS  GYSPSSP   +P+SPGYSP             TSP +  TSPG+SP SP
Sbjct: 1552 GGFSPAATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMGITSPRFM-TSPGFSPASP 1610

Query: 1532 GYSPTSPTYSPSSPGY---SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1588
             ++PTSP YSP+SP Y   SPTSP+YSPTSP +SPTSP+YSPTSPS+SPTSP++SPTSPS
Sbjct: 1611 SFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPTSPAFSPTSPS 1670

Query: 1589 YSPTSPSYSPT---SPSYSPTSPAYSPTSPAYSPTSP-AYSPTSPSY--SPTSPSYSPTS 1642
            YSPTSP+       SP+ SPTSP Y+PTSP +SPTSP  YSPTSP++  SPTSP   PTS
Sbjct: 1671 YSPTSPAIGGARHLSPT-SPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPG-GPTS 1728

Query: 1643 PSYSPTSPSYSPTSP 1657
            P YSPTSP++SPTSP
Sbjct: 1729 PGYSPTSPAFSPTSP 1743



 Score =  173 bits (439), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 122/237 (51%), Positives = 158/237 (66%), Gaps = 24/237 (10%)

Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSP-SYSPTSPAYSPTSPAY 1617
            ++SP   + + T   ++   PS      S + TSP+ YSP+SP S +PTSP YSPTS   
Sbjct: 1527 NFSPIRQAGAETPGGFTEYQPSGGFGGFSPAATSPAGYSPSSPFSANPTSPGYSPTSSYS 1586

Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY---SPTSPAYSPTSPGYS 1674
              +      TSP +  TSP +SP SPS++PTSP+YSPTSP+Y   SPTSP+YSPTSPG+S
Sbjct: 1587 PTSP-GMGITSPRFM-TSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFS 1644

Query: 1675 PTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSY 1734
            PTSP+YSPTSP++SPTSP+++P S    PS  YSP+SP +  A   SPTSP    TS  Y
Sbjct: 1645 PTSPNYSPTSPSFSPTSPAFSPTS----PS--YSPTSPAIGGARHLSPTSP----TSPKY 1694

Query: 1735 SPTSPSYSPSSP-TYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
            +PTSP +SP+SP TYSP+SP  AG      SP+SP    S GYSP++P +SP+S  Q
Sbjct: 1695 TPTSPGWSPTSPQTYSPTSPNFAG------SPTSPGGPTSPGYSPTSPAFSPTSPRQ 1745



 Score =  137 bits (345), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 97/200 (48%), Positives = 125/200 (62%), Gaps = 32/200 (16%)

Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS-YSPTSP-SYSPTSPSYSP------ 1661
            +SP   A + T   ++   PS      S + TSP+ YSP+SP S +PTSP YSP      
Sbjct: 1528 FSPIRQAGAETPGGFTEYQPSGGFGGFSPAATSPAGYSPSSPFSANPTSPGYSPTSSYSP 1587

Query: 1662 -------TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
                   TSP +  TSPG+SP SPS++PTSP YSPTSP+Y             SP+SP  
Sbjct: 1588 TSPGMGITSPRFM-TSPGFSPASPSFAPTSPAYSPTSPAYG----------QASPTSPSY 1636

Query: 1715 SPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
            SP SP +SPTSPNYSPTS S+SPTSP++SP+SP+YSP+SP  A GG    SP+SP    S
Sbjct: 1637 SPTSPGFSPTSPNYSPTSPSFSPTSPAFSPTSPSYSPTSP--AIGGARHLSPTSPT---S 1691

Query: 1774 AGYSPSAPGYSPSSTSQYTP 1793
              Y+P++PG+SP+S   Y+P
Sbjct: 1692 PKYTPTSPGWSPTSPQTYSP 1711


>gi|452844541|gb|EME46475.1| hypothetical protein DOTSEDRAFT_70470 [Dothistroma septosporum NZE10]
          Length = 1773

 Score = 1704 bits (4412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 902/1818 (49%), Positives = 1190/1818 (65%), Gaps = 172/1818 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            FP S A +  V+ +QFG+ SP+EI+ MSV  IE+ ET   +R +P+  GL+DP+LGTIDR
Sbjct: 4    FPKSLAPLKTVQEIQFGLFSPEEIKNMSVCHIEYPETMDEQRNRPREKGLNDPKLGTIDR 63

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
              +C TC     ECPGHFGH+ELA P+FH+GF+  +  I+ SVC NC K+L DE    F 
Sbjct: 64   NSRCGTCGEEQLECPGHFGHIELAIPVFHVGFITKIKKILESVCHNCGKLLEDERSTAFA 123

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK---KNKGGCGAQQPKLT 179
             ALK+R+PK R ++I   CK KT C   +     G  GE+P K      GGCG  QP + 
Sbjct: 124  MALKLRDPKRRFEQITRLCKGKTDCAADEPEKDDGNFGEDPKKPKQAGHGGCGNVQPTIR 183

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
             E +K+I  +K  + +    +   E    K+ +T +  L + + IS+ED   LGLN  YA
Sbjct: 184  KEQLKLIGTWKMAKNEETGDDAGIE----KRPITPQMALNIFRNISEEDLARLGLNVDYA 239

Query: 240  RPDWMILQVLPIPPPPVRPS-------------DDLTHQLAMIIRHNENLRRQERNGAPA 286
            RP+WM+L VLP+PPP VRPS             DDLT++L+ IIR N N+RR E+ G+P 
Sbjct: 240  RPEWMVLTVLPVPPPAVRPSISVDGTSQGMRSEDDLTYKLSDIIRANSNVRRCEQEGSPQ 299

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            HI+ EF  LLQ+H+ATY DN++ G PRA Q++GRP+K+I +RLK+KEGR+RGNLMGKRVD
Sbjct: 300  HILEEFTTLLQYHVATYMDNDIAGLPRAQQKTGRPLKAIRARLKSKEGRLRGNLMGKRVD 359

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP +++DQ+GVP SIA  LT+PE VTPYN  +L ELV  GP   PG   AK
Sbjct: 360  FSARTVITGDPNLDLDQVGVPRSIARVLTFPERVTPYNKHKLTELVRNGPLEHPG---AK 416

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            +IIRDDG R+DLRY K++ + +L +G+ VERH+ D D+++FNRQPSLHK S+MGHR+K+M
Sbjct: 417  FIIRDDGSRIDLRYHKRAGEINLMVGWIVERHVVDNDYIIFNRQPSLHKESMMGHRVKVM 476

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            PYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV  L  VP  IVSPQ N P+MGI
Sbjct: 477  PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHETRAEVANLCAVPHNIVSPQKNGPLMGI 536

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDT+ G   +T+RD F++ +  MNIL+W   +DG VP P I+KP P WTGKQ+ +L +P
Sbjct: 537  VQDTMAGIYMMTRRDVFLDYEQVMNILLWVPGWDGVVPPPAIIKPLPRWTGKQIASLALP 596

Query: 587  KQINLFRTAAWHA----DNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
              +N+ R    H     + D G++        I+ GE++ G + K  +G S G ++H I+
Sbjct: 597  AGLNILRPKKDHMPLREEKDDGLV--------IQNGEIIWGRMVKGIVGASGGGVVHCIF 648

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             + GPDAA +F    Q +V YWLL N FS+GIGDTI D   +  I D I   K  V+   
Sbjct: 649  NDRGPDAAVEFFNAAQRIVCYWLLHNGFSVGIGDTIPDDFMVGKIEDEIISQKEAVQGFE 708

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
             + Q   LEP PG T+ E+FE+K    L+ AR+++G  A K ++  NN+  MV +GSKGS
Sbjct: 709  TEVQANELEPAPGMTIRETFESKTKAALDNARNKSGDVAYKHMNACNNVGIMVKSGSKGS 768

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
              N+SQMTA VGQQ++EGKR+PFGF  R LPHF KDDY P SRGFVENSYLRGLTPQEFF
Sbjct: 769  TTNVSQMTAAVGQQSLEGKRLPFGFKYRVLPHFPKDDYSPASRGFVENSYLRGLTPQEFF 828

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAMGGREGLIDTAVKT+ETGYIQRRLVKA+E++M+KYD TVRNSLGD++QF YGEDG+D
Sbjct: 829  FHAMGGREGLIDTAVKTAETGYIQRRLVKALEEVMIKYDSTVRNSLGDILQFAYGEDGLD 888

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEM-----DEENWNPNYMLQEYIDDLKTIKELRDVF 937
            +++IE Q L  +    ++FDK ++ ++      +++ + N +  E   DL    E++ +F
Sbjct: 889  AMFIEEQPLSIIAASHAQFDKKYKLDVINPGTKDQSLSSNML--EMAVDLDGDVEVQKLF 946

Query: 938  DAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVE 997
            DAE + +  DR ++   +    +  + LP+N+ R+I NA+  FK++    SD+ P E + 
Sbjct: 947  DAEYEAIANDRDKIRKSVDDDKEQRY-LPLNVSRMIMNAKDKFKINDNSKSDLDPRETIP 1005

Query: 998  AVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGE 1057
             V  L +RLKV+ G+D LS+EA  NATL    L RS  A KR++ E  L++ A + ++G+
Sbjct: 1006 KVAALLDRLKVIRGDDALSLEADDNATLLCKALFRSRLAFKRIVNEDHLSKLALDNILGD 1065

Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
            IE+RFL++LV+PGEM+G +AAQSIGEPATQMTLNTFH AGV+AK  T GVPRL+EI+NVA
Sbjct: 1066 IENRFLRALVSPGEMVGVLAAQSIGEPATQMTLNTFHLAGVTAKTTTKGVPRLKEILNVA 1125

Query: 1118 KKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVE 1177
            + IKTP++ V+  P     +E AK ++  +E+T+LR VT+ TE++YDPD   T+I+ D +
Sbjct: 1126 ENIKTPNMKVYQLPETAQFQESAKQLRSMVEFTSLRGVTDETEIYYDPDVQSTVIDVDKD 1185

Query: 1178 FVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFND 1237
             V++++ +PD+D  P+    WLLRI L R  ++DK L++  VA +I + F  D+  IF D
Sbjct: 1186 MVEAHFIIPDDDENPDAQGKWLLRITLGRAKLLDKGLTVTNVANRIKEMFGKDVAVIFAD 1245

Query: 1238 DNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV----------- 1286
            DNAD+ ++R+R+  +   + +  +++ E++  LK++E++ML  + LRGV           
Sbjct: 1246 DNADECVIRVRM--NTGGQNKDEEDAEEEEDTLKRLEAHMLDTVVLRGVSGVRRAFVSKD 1303

Query: 1287 ------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGI 1316
                                          NL  ++  E VD  RTT NH   I++V GI
Sbjct: 1304 ARLYEAPDGALKFSTQEEKCQEWLLDTDGVNLKDILAVEGVDPTRTTCNHFQSIMKVFGI 1363

Query: 1317 EAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCS 1376
            EAVR +L+ E++ V++ DGSYVN+RH+AILCD M  RG LMA+TRHGINR+DTG +MRCS
Sbjct: 1364 EAVRASLMREMKDVLTNDGSYVNHRHMAILCDVMCARGELMAVTRHGINRSDTGALMRCS 1423

Query: 1377 FEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSY 1436
            FEETV+IL DAA   E D  RGV+ENI+LGQLAP GTG+  + L+ EMLK  +  Q P  
Sbjct: 1424 FEETVEILFDAASSGELDDCRGVSENIILGQLAPSGTGEFDMLLDTEMLKTVMPSQRPVQ 1483

Query: 1437 MEGLEFGMTPARSP-VSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPT 1493
                +  M  A SP V G  TPY  G              SP++++ F+    G +FSP 
Sbjct: 1484 ----QMAMGGAASPMVEGAMTPYDVG--------------SPMSESGFAGPDYGASFSPI 1525

Query: 1494 SSPGYSPS----------SPGYSPSSPGYSPTSPGYSPTSP--GYSPTSPGYSPTSPTYS 1541
             +PG              S G SP S G SP   GY+PTSP  G SPTSP Y      YS
Sbjct: 1526 INPGQDEGGGLTAYGGGFSGGMSPYSGGMSP---GYAPTSPFSGMSPTSPAYG-----YS 1577

Query: 1542 PSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---- 1597
            P+SPGY     +YSPTSP+   TSP+Y+PTSPSYSP SP+Y+PTSPSYSPTSP+YS    
Sbjct: 1578 PTSPGYG----SYSPTSPAAGITSPAYAPTSPSYSPASPAYTPTSPSYSPTSPAYSGGGR 1633

Query: 1598 --------------------------PTSPSYSPTSPAYSP---TSPAYSPTSPAYSPTS 1628
                                      PTSP+YSPTSPA++P   TSP YSPTSP YSPTS
Sbjct: 1634 GSKVSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPAHAPGSATSPKYSPTSPQYSPTS 1693

Query: 1629 PSYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPAYSPTSPGY---SPTSP-SYSP 1682
            P YSPTSP+YSPTSP+Y  +    S SPTSPSYSP SP YSPTSP     SP SP  YSP
Sbjct: 1694 PQYSPTSPAYSPTSPAYRSNGAGSSNSPTSPSYSPRSPVYSPTSPAQDADSPNSPDKYSP 1753

Query: 1683 TSPTYSPTSPSYNPQSAK 1700
            TSP +SPTSP+Y+P S K
Sbjct: 1754 TSPQHSPTSPAYSPASPK 1771



 Score =  173 bits (438), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 124/240 (51%), Positives = 142/240 (59%), Gaps = 63/240 (26%)

Query: 1593 SPSYSPTSPSYSPTSP--AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
            SP     SP Y+PTSP    SPTSPAY      YSPTSP Y     SYSPTSP+   TSP
Sbjct: 1548 SPYSGGMSPGYAPTSPFSGMSPTSPAY-----GYSPTSPGYG----SYSPTSPAAGITSP 1598

Query: 1651 SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS----------------------------- 1681
            +Y+PTSPSYSP SPAY+PTSP YSPTSP+YS                             
Sbjct: 1599 AYAPTSPSYSPASPAYTPTSPSYSPTSPAYSGGGRGSKVSPTSPSYSPTSPSYSPTSPSY 1658

Query: 1682 -PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSY----- 1734
             PTSP YSPTSP++ P SA    S  YSP+SP+ SP SP YSPTSP YSPTS +Y     
Sbjct: 1659 SPTSPNYSPTSPAHAPGSAT---SPKYSPTSPQYSPTSPQYSPTSPAYSPTSPAYRSNGA 1715

Query: 1735 ----SPTSPSYSPSSPTYSPSSPYNAGG--GNPD-YSPSSPQYSPSAGYSPSAPGYSPSS 1787
                SPTSPSYSP SP YSP+SP        +PD YSP+SPQ+SP++      P YSP+S
Sbjct: 1716 GSSNSPTSPSYSPRSPVYSPTSPAQDADSPNSPDKYSPTSPQHSPTS------PAYSPAS 1769



 Score =  157 bits (398), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 109/239 (45%), Positives = 135/239 (56%), Gaps = 52/239 (21%)

Query: 1600 SPSYSPTSPAYSPTSP--AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
            SP     SP Y+PTSP    SPTSPAY      YSPTSP Y     SYSPTSP+   TSP
Sbjct: 1548 SPYSGGMSPGYAPTSPFSGMSPTSPAYG-----YSPTSPGYG----SYSPTSPAAGITSP 1598

Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS-----------------PTSPSYNPQSAK 1700
            +Y+PTSP+YSP SP Y+PTSPSYSPTSP YS                  +        + 
Sbjct: 1599 AYAPTSPSYSPASPAYTPTSPSYSPTSPAYSGGGRGSKVSPTSPSYSPTSPSYSPTSPSY 1658

Query: 1701 YSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP-YNAGGG 1759
               S  YSP+SP  +P S    TSP YSPTS  YSPTSP YSP+SP YSP+SP Y + G 
Sbjct: 1659 SPTSPNYSPTSPAHAPGSA---TSPKYSPTSPQYSPTSPQYSPTSPAYSPTSPAYRSNGA 1715

Query: 1760 -------NPDYSPSSPQYSPSA------------GYSPSAPGYSPSSTSQYTPQTNRDD 1799
                   +P YSP SP YSP++             YSP++P +SP+S + Y+P + +++
Sbjct: 1716 GSSNSPTSPSYSPRSPVYSPTSPAQDADSPNSPDKYSPTSPQHSPTSPA-YSPASPKEE 1773


>gi|308468219|ref|XP_003096353.1| CRE-AMA-1 protein [Caenorhabditis remanei]
 gi|308243268|gb|EFO87220.1| CRE-AMA-1 protein [Caenorhabditis remanei]
          Length = 1853

 Score = 1702 bits (4409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 876/1634 (53%), Positives = 1132/1634 (69%), Gaps = 133/1634 (8%)

Query: 10   AEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
            A +  V  VQFGIL P+EI++MSV  +E  E  E GKPK GGL DPR G IDR+ +C TC
Sbjct: 10   APLRTVCRVQFGILGPEEIKRMSVAHVEFPEIYENGKPKLGGLMDPRQGVIDRRGRCMTC 69

Query: 70   TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR- 128
              N+ +CPGHF HLELAKP+FHIGF+   L I+R VCF C ++L D+ + +    LK   
Sbjct: 70   AGNLTDCPGHFAHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKSNPRVIDILKKTS 129

Query: 129  -NPKNRLKKILDACKNKTKCEGG--------DEIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
             N K RL  I D CK+K+ CEG         D++D P   GE   KK   GCG  QP   
Sbjct: 130  GNAKKRLALIYDLCKSKSVCEGAAEKEEGLPDDVDDP-MSGE---KKIPAGCGRYQPSYR 185

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
              G+ + AE+K  +  N+D +      ERK  LTAERVL V K+I+DED  ++G++P++A
Sbjct: 186  RVGIDINAEWK--KNVNEDTQ------ERKIMLTAERVLEVFKQITDEDILVIGMDPQFA 237

Query: 240  RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RP+WMI  VLP+PP  VRP+          DDLTH+L+ II+ N+ L+R E NGA AH++
Sbjct: 238  RPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVL 297

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            ++  +LLQ+H+AT  DN +PG P ATQ+ GRP+KSI  RLK KEGRIRGNLMGKRVDFSA
Sbjct: 298  TDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSA 357

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVIT DP + ID +GVP +IA NLT+PE VTP+N+++L+ELV  G    PG   AKYII
Sbjct: 358  RTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPG---AKYII 414

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            R++G R+DLRY  +++D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+S
Sbjct: 415  RENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWS 474

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLSVTSPYNADFDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQD
Sbjct: 475  TFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEICMVPRQLITPQANKPVMGIVQD 534

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   R +TKRD FI+    M++LM+   +DGKVPQP ILKP+PLWTGKQ+F+LIIP  +
Sbjct: 535  TLCAVRMMTKRDVFIDWSFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQLFSLIIPGNV 594

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            N+ RT + H D+ D G    ++ GDT V IE GELLSG +C KT+G S G+L+HV+  E+
Sbjct: 595  NVLRTHSTHPDSEDSGPYKWISPGDTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVTLEL 654

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G + A  F  H Q ++N WLL+   +IGIGDTIAD  T   I +TI KAK +V ++I++A
Sbjct: 655  GYEIAANFYSHIQTVINAWLLRVGHTIGIGDTIADHATYLDIQNTIKKAKQDVVDIIEKA 714

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FENKVNQ+LN ARD  GSSAQKSLSE NN K+MV +GSKGS IN
Sbjct: 715  HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKIN 774

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHA
Sbjct: 775  ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 834

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNSL  ++Q  YGEDG+D +W
Sbjct: 835  MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 894

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDD-LKTIKELRD---VFDAEV 941
            +E Q + ++K   + F++ FR ++ +      ++ + Y +D ++ I+E  D   + ++E 
Sbjct: 895  VEDQNMPTMKPNNAVFERDFRMDLTDN----KFLRKNYSEDVVREIQESEDGISLVESEW 950

Query: 942  QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
             +LE DR +L  +I   GD+   LP NL+RLIWNAQK FKVD R+P ++ P+ V+  V +
Sbjct: 951  SQLEEDR-RLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRE 1009

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L ++L +V G D +S +AQ NATL  NILLRST  +K++    +L  EAF+W++GE+ESR
Sbjct: 1010 LSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEVESR 1069

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K++K
Sbjct: 1070 FQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLK 1129

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPSL+VFL        E+AK+V C LE+TTL+ VT  T ++YDPDP  T+I ED E+V  
Sbjct: 1130 TPSLTVFLTGAAAKDAEKAKDVLCKLEHTTLKKVTLNTAIYYDPDPKNTVIAEDEEWVSI 1189

Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            +YEMPD D++  + SPWLLRIEL+R+ MVDKKL+M  +A++I+  F +D+  I+ DDNA+
Sbjct: 1190 FYEMPDHDLS--RTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAE 1247

Query: 1242 KLILRIRIMNDE--APKGELNDESAEDDVFLKKIESNMLTEMALRGV------------- 1286
            KL+ R+RI  ++  A   E   +  EDDVFL+ IE+NML+++ L+G+             
Sbjct: 1248 KLVFRLRIAGEDKGADTQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNT 1307

Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                        LL V+    +D  RTTSN + EI EVLGIEAV
Sbjct: 1308 DDKKRIIITPEGGFKAVADWILETDGTALLRVLAERQIDPVRTTSNDICEIFEVLGIEAV 1367

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R+A+  E+  VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR + G +MRCSFEE
Sbjct: 1368 RKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEE 1427

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM-- 1437
            TVDIL++A+V AE D ++GV+ENIMLGQLA  GTG   L L+ E  K  +E+     M  
Sbjct: 1428 TVDILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGA 1487

Query: 1438 ----------EGLEF---------GMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTD 1478
                         EF         G+TP+    S +P   G MSP   FSP   +    D
Sbjct: 1488 GYYGGFAGSPNAHEFSPSHSPWNSGVTPSYGGASWSPGAGG-MSPSAGFSPAGNM----D 1542

Query: 1479 AQFSPYVGGMAFSPTSSPGYSPSSPG-----YSPSSPGYSPTSPG-YSPTSPGYSPTSPG 1532
               SP+  G         G+SP+SPG      SP +P Y   SPG YSPTSP +S TSP 
Sbjct: 1543 GGASPFNEG---------GWSPASPGDPLGALSPRTPAYGGMSPGAYSPTSPQFSMTSPH 1593

Query: 1533 YSPTSPTYSPSSPG 1546
            YSPTSP+YSP+SP 
Sbjct: 1594 YSPTSPSYSPTSPA 1607



 Score =  167 bits (423), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 92/132 (69%), Positives = 106/132 (80%), Gaps = 13/132 (9%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYS----------PTSPSYSPTSPSYSPTSPSY 1596
            YSPTSP YSPTSP+YSPTSP+YSPTSPSY           P+SP+YSPTSPSYSPTSP Y
Sbjct: 1687 YSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQY 1746

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
            SPTSP YSP+SP Y+P+SP Y+PTSP     SP YSPTSP+YSPTSPSY+P+SP YSPTS
Sbjct: 1747 SPTSPQYSPSSPTYTPSSPTYNPTSP--RAFSPQYSPTSPTYSPTSPSYTPSSPQYSPTS 1804

Query: 1657 PSYSPTSPAYSP 1668
            P+Y+P SP+  P
Sbjct: 1805 PTYTP-SPSDQP 1815



 Score =  139 bits (351), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/169 (55%), Positives = 111/169 (65%), Gaps = 44/169 (26%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----------PTSPSYSPTSPAYSPTSPGY 1673
            YSPTSP+YSPTSP+YSPTSP+YSPTSPSY           P+SP+YSPTSP+YSPTSP Y
Sbjct: 1687 YSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQY 1746

Query: 1674 SPTSPSYSPTSPTYSPTSPSYNPQSAK-YSPSLAYSPSSPRLSPASP-YSPTSPNYSPTS 1731
            SPTSP YSP+SPTY+P+SP+YNP S + +SP   YSP+SP  SP SP Y+P+SP YSPTS
Sbjct: 1747 SPTSPQYSPSSPTYTPSSPTYNPTSPRAFSPQ--YSPTSPTYSPTSPSYTPSSPQYSPTS 1804

Query: 1732 SSYSPTSPSYSP-----------------------------SSPTYSPS 1751
             +Y+P SPS  P                             SSPTY P+
Sbjct: 1805 PTYTP-SPSDQPGTSAQYSPSSPTYSPSSPTYSPASPSYSPSSPTYDPN 1852



 Score =  133 bits (334), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/133 (59%), Positives = 94/133 (70%), Gaps = 15/133 (11%)

Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTSPSYN----PQSAKYSPSLAYSPSSPRLSPASPYS 1721
            YSPTSP YSPTSP+YSPTSPTYSPTSPSY             S  YSP+SP       YS
Sbjct: 1687 YSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPS------YS 1740

Query: 1722 PTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSA 1780
            PTSP YSPTS  YSP+SP+Y+PSSPTY+P+SP      +P YSP+SP YSP++  Y+PS+
Sbjct: 1741 PTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPR---AFSPQYSPTSPTYSPTSPSYTPSS 1797

Query: 1781 PGYSPSSTSQYTP 1793
            P YSP+S + YTP
Sbjct: 1798 PQYSPTSPT-YTP 1809


>gi|324120578|dbj|BAJ78680.1| RNA polymerase II largest subunit [Chrysoperla nipponensis]
          Length = 1705

 Score = 1702 bits (4407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 890/1647 (54%), Positives = 1133/1647 (68%), Gaps = 140/1647 (8%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV    I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRFVKKVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVIDRNSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM+ECPGHFGH++L+KP+FH+GF+   + I+R VCF CSK+L    + K K+  
Sbjct: 66   CQTCAGNMSECPGHFGHIDLSKPVFHVGFITKTIKILRCVCFYCSKLLVSPTNPKIKEIV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            +K +  P+ RL  + D CK K  CEGGDE+D+  +D   G    K+  GGCG  QP +  
Sbjct: 126  MKSKGQPRKRLAFVYDLCKGKNICEGGDEMDINKEDDGRGISTAKQTHGGCGRYQPNIRR 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ + AE+K     N+D +      E+K  L+AERV  +LK I+DE+C +LG++PK+AR
Sbjct: 186  AGLDLTAEWK---HVNEDSQ------EKKIPLSAERVWEILKHITDEECFILGMDPKFAR 236

Query: 241  PDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMI+ VLP+PP             +  DDLTH+L+ II+ N  L R E+ GA AH+IS
Sbjct: 237  PDWMIVTVLPVPPLPVRPAVVMYGSAKNQDDLTHKLSDIIKSNNELARNEQAGAAAHVIS 296

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 297  ENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 356

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA NLT+PE VTP+NI+++ ELV+ G    PG   AKYI+R
Sbjct: 357  TVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMMELVQRGNSQYPG---AKYIVR 413

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 414  DNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVIFNRQPTLHKMSMMGHRVKVLPWST 473

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 474  FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDT 533

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD FIEK+  MNILM+   +DGK+PQP ILKP+PLWTGKQ+F+LIIP  +N
Sbjct: 534  LTAVRKMTKRDVFIEKEQIMNILMFLPIWDGKMPQPAILKPKPLWTGKQIFSLIIPGNVN 593

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            L RT + H D+ D G    ++ GDT V +E GEL+ G LCKKTLG S GSL+HV + E+G
Sbjct: 594  LIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGASAGSLLHVCFLELG 653

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             +    F G+ Q ++N WLL    SIGIGDTIAD +T   I ++I KAK +V  +I++A 
Sbjct: 654  HEVCGLFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQNSIKKAKEDVIEVIQKAH 713

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV AGSKGS INI
Sbjct: 714  NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINI 773

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 774  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 833

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGEMV 893

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E QT+ ++K+    F++ F+F+      N  Y+ + + +D+  IK+L       +Q+LE 
Sbjct: 894  EFQTMPTIKLSNRAFERRFKFDPS----NERYLRRIFSEDV--IKQLLGSGGDVIQELER 947

Query: 947  DRYQLAT------EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            +  QL        +I  SG++   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V 
Sbjct: 948  EWEQLVKDRETLRQIFPSGENKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVR 1007

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L ++  +V GED LS +A +NATL F  L+RST  +K V ++ RL+ EAFEW+IGEIE+
Sbjct: 1008 DLLKKCVIVAGEDHLSKQANENATLLFQCLIRSTLCTKCVSEDFRLSSEAFEWLIGEIET 1067

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RF Q+  APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK 
Sbjct: 1068 RFQQAQCAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 1127

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            K PSL+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV 
Sbjct: 1128 KAPSLTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVITEDQEFVN 1187

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
             YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA
Sbjct: 1188 VYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNA 1245

Query: 1241 DKLILRIRIMNDEAPKGELND-----ESAEDDVFLKKIESNMLTEMALRGVNLLA----- 1290
            +KL+LRIRIMN +  K          +  EDD+FL+ IE+NML++M L+G+  +A     
Sbjct: 1246 EKLVLRIRIMNSDDGKFGGEGGEEEVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMH 1305

Query: 1291 -----------------------------------VMCHEDVDARRTTSNHLIEIIEVLG 1315
                                               V+   DVD  RT SN + EI  VLG
Sbjct: 1306 LPQTDSKKRIVITDTGEFKAIAEWLLETDGTCMMKVLSERDVDPVRTFSNDICEIFSVLG 1365

Query: 1316 IEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRC 1375
            IEAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRC
Sbjct: 1366 IEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRC 1425

Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL---- 1431
            SFEETVD+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  IEL    
Sbjct: 1426 SFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKAGIELPLGI 1485

Query: 1432 ---------QLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYL---FSPNLRLSPVTDA 1479
                                  TP+ SP  GTP+  G  +P Y    +SP   L     +
Sbjct: 1486 GMGGGLGIGMGGMGGMFFGTQATPSISP--GTPWTMG--TPSYASAGWSPGQGLG----S 1537

Query: 1480 QFSPYVGGMAFSPTSSPGYSPSSPGY-SPSSPGY--SPTSPGYSPTSPG----------- 1525
              +P  GG +FSP+++   S  SP Y SP SPG   SP SP Y P+  G           
Sbjct: 1538 GMTP--GGPSFSPSAASDASGMSPAYASPFSPGQISSPMSP-YVPSGGGQSPNYSPSSPS 1594

Query: 1526 -------YSPTSPGYSPTSPTYSPSSP 1545
                    +PTSPGYSPTSP+YSP+SP
Sbjct: 1595 FPPTSPSMTPTSPGYSPTSPSYSPTSP 1621



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 76/119 (63%), Gaps = 10/119 (8%)

Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPS-YSPTSPAY-SP 1612
            +PS SP +P ++  +PSY+  S  +SP        +P  PS+SP++ S  S  SPAY SP
Sbjct: 1508 TPSISPGTP-WTMGTPSYA--SAGWSPGQGLGSGMTPGGPSFSPSAASDASGMSPAYASP 1564

Query: 1613 TSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
             SP     S   SP  PS    SP+YSP+SPS+ PTSPS +PTSP YSPTSP+YSPTSP
Sbjct: 1565 FSPGQ--ISSPMSPYVPSGGGQSPNYSPSSPSFPPTSPSMTPTSPGYSPTSPSYSPTSP 1621



 Score = 60.5 bits (145), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 76/120 (63%), Gaps = 10/120 (8%)

Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPA-YSPTSPAY-SP 1619
            +PS SP +P ++  +PSY+  S  +SP        +P  PS+SP++ +  S  SPAY SP
Sbjct: 1508 TPSISPGTP-WTMGTPSYA--SAGWSPGQGLGSGMTPGGPSFSPSAASDASGMSPAYASP 1564

Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
             SP     S   SP  PS    SP+YSP+SPS+ PTSPS +PTSP YSPTSP YSPTSP+
Sbjct: 1565 FSPGQ--ISSPMSPYVPSGGGQSPNYSPSSPSFPPTSPSMTPTSPGYSPTSPSYSPTSPN 1622



 Score = 53.5 bits (127), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 50/117 (42%), Positives = 67/117 (57%), Gaps = 22/117 (18%)

Query: 1600 SPSYSPTSPAYSPTSPAYSPTSPAYSP---TSPSYSPTSPSYSPTSPS-YSPTSPSY-SP 1654
            +PS SP +P ++  +P+Y+  S  +SP        +P  PS+SP++ S  S  SP+Y SP
Sbjct: 1508 TPSISPGTP-WTMGTPSYA--SAGWSPGQGLGSGMTPGGPSFSPSAASDASGMSPAYASP 1564

Query: 1655 TSPSY--SPTSPAYSPTSPG-----------YSPTSPSYSPTSPTYSPTSPSYNPQS 1698
             SP    SP SP Y P+  G           + PTSPS +PTSP YSPTSPSY+P S
Sbjct: 1565 FSPGQISSPMSP-YVPSGGGQSPNYSPSSPSFPPTSPSMTPTSPGYSPTSPSYSPTS 1620



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 57/118 (48%), Gaps = 41/118 (34%)

Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPS-YSPTSPAY-SP 1668
            +P+ SP +P ++  +PSY+  S  +SP        +P  PS+SP++ S  S  SPAY SP
Sbjct: 1508 TPSISPGTP-WTMGTPSYA--SAGWSPGQGLGSGMTPGGPSFSPSAASDASGMSPAYASP 1564

Query: 1669 TSPG---------------------------------YSPTSPSYSPTSPTYSPTSPS 1693
             SPG                                  +PTSP YSPTSP+YSPTSP+
Sbjct: 1565 FSPGQISSPMSPYVPSGGGQSPNYSPSSPSFPPTSPSMTPTSPGYSPTSPSYSPTSPN 1622



 Score = 48.1 bits (113), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 36/118 (30%)

Query: 1708 SPSSPRLSPASPYSPTSPNYSPTSSSYSP---TSPSYSPSSPTYSPSSPYNAGGGNPDY- 1763
            + ++P +SP +P++  +P+Y+  S+ +SP        +P  P++SPS+  +A G +P Y 
Sbjct: 1505 TQATPSISPGTPWTMGTPSYA--SAGWSPGQGLGSGMTPGGPSFSPSAASDASGMSPAYA 1562

Query: 1764 ---------SPSSPQYSPSAG-------------------YSPSAPGYSPSSTSQYTP 1793
                     SP SP Y PS G                    +P++PGYSP+S S Y+P
Sbjct: 1563 SPFSPGQISSPMSP-YVPSGGGQSPNYSPSSPSFPPTSPSMTPTSPGYSPTSPS-YSP 1618


>gi|9955855|dbj|BAB12227.1| RNA polymerase II largest subunit [Aspergillus oryzae]
 gi|83767526|dbj|BAE57665.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|391867452|gb|EIT76698.1| RNA polymerase II, large subunit [Aspergillus oryzae 3.042]
          Length = 1748

 Score = 1701 bits (4406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 903/1760 (51%), Positives = 1190/1760 (67%), Gaps = 126/1760 (7%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            FPYS A +  ++ +QFG+ SP+EI++MSVV +E+ ET   +R +P+  GL+DPRLGTIDR
Sbjct: 6    FPYSKAPLRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDEQRQRPRTKGLNDPRLGTIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            +  CETC     ECPGHFGH+ELA P+FHIGF+  +  ++ +VC NC KI A+  D KF 
Sbjct: 66   QWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKANTSDSKFL 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGG---DEIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
            +AL++R+PK R   I    K+ T CE     DE +   ++  +P + + GGCG  QP + 
Sbjct: 126  EALRMRDPKRRFDHIWRLSKDITICEADPPPDEDEPYAKESSKPTRMH-GGCGNAQPTIR 184

Query: 180  IEGMKMIAEYKAQRKKNDDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
             EG+ ++  +K  +   D+ + Q PE    K+T+T +  L + + IS ED +++GL+  Y
Sbjct: 185  KEGITLVGTWKPSKSMMDEMDMQQPE----KKTITPQMALNIFRNISHEDVRIMGLSNDY 240

Query: 239  ARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+WM+L VLP+PPPPV             R  DDLT++LA I+R N+N++R E+ GAP
Sbjct: 241  ARPEWMVLTVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIVRANQNVQRCEQEGAP 300

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             H++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I SRLK KEGR+R NLMGKRV
Sbjct: 301  EHVVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRV 360

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT DP +++D++GVP SIA  LTYPE VTPYNI++L++LV  GP+  PG   A
Sbjct: 361  DFSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIDKLQQLVSNGPNEHPG---A 417

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            +YI+RD+G+R+DLR+ K++    L  G+KVERH+ DGD +LFNRQPSLHK S+MGHR+++
Sbjct: 418  RYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHVMDGDVILFNRQPSLHKESMMGHRVRV 477

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E+RAE+L+L +VP  IVSPQ N P+MG
Sbjct: 478  MPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELLQLALVPMNIVSPQRNGPLMG 537

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDTL G  KI +RDTF+ K+  MN++MW  D+DG +P P ILKPRP WTGKQ+ ++ +
Sbjct: 538  IVQDTLCGIYKICRRDTFLTKEQVMNLMMWVPDWDGVIPPPAILKPRPRWTGKQIISMAL 597

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            P  +NL R    ++   +      D  + I  G+L+ G   KKT+G S G +IH I+ E 
Sbjct: 598  PSGLNLLRVDKDNSALSEKFAPLNDGGLLIHGGQLMYGMFSKKTVGASGGGVIHTIFNEY 657

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP  A  F    Q +VNYWLL N FSIGIGDTI DA T++ I + + + K  V+ +   A
Sbjct: 658  GPGTAVAFFNGAQAIVNYWLLHNGFSIGIGDTIPDAVTIQRIENCVRERKKEVETITASA 717

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             D +LEP PG  + E+FE+KV++ LN ARDEAGS  +KSL + NN   M  +GSKGS IN
Sbjct: 718  TDNTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTIN 777

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHA
Sbjct: 778  ISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHA 837

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD+IQF+YGEDG+D   
Sbjct: 838  MAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAH 897

Query: 886  IESQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE+Q +D +K    +F   FR + MD E +  P  +  E  +++    E++   D E ++
Sbjct: 898  IENQRVDIIKCSDDQFRDRFRIDLMDPERSLGPEVL--EQANEIAGDVEVQRYLDEEWEQ 955

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            L   R  L T +A   +    LP+N++R++  A+ TF++     SD+HP EV+  V  L 
Sbjct: 956  LLKARAFLRT-VAKEDEEMMQLPINVQRILEMARTTFRIREGTISDLHPAEVIPQVQALL 1014

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
            +RL +V G+DP+S EAQ+NATL F   LRS  A +R++ E+ + + AF+ VIG IESRF 
Sbjct: 1015 DRLLIVRGDDPISQEAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAIESRFA 1074

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            ++    GEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA  IKTP
Sbjct: 1075 KANAPAGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTP 1134

Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
            S++V+ +PG    KE AK ++  +E+T+LRSVTEATE++YDPD   T+IE D + V+SY+
Sbjct: 1135 SMTVYQEPGRTHDKEGAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVIENDRDMVESYF 1194

Query: 1184 EMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
             +P ED+  +  + S WLLRI L+R  ++DK L++  VA +I Q +  D+  IF+D+NAD
Sbjct: 1195 IIP-EDVTDDSSRQSKWLLRIILSRPKLLDKGLTVQDVATRIKQAYPKDIAVIFSDNNAD 1253

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVN-------------- 1287
            + ++RIR +  +  K + +D+  E DV LKK+E ++L  + LRGVN              
Sbjct: 1254 EQVIRIRQI--QDHKEDEDDDDIEYDVTLKKLEQHLLDTLTLRGVNGVERAFINEKSKVR 1311

Query: 1288 ---------------------------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                       L  V+    VDA RT SN  IE+ EV GIEA R
Sbjct: 1312 VLEDGSLFTSKVDPLCKEWVLETSGSALGEVLAVPGVDATRTYSNQFIEVFEVFGIEAAR 1371

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             A+L EL  V++FDGSYVN+RHLA+L D MT RG+L  +TRHGINR D G +MRCSFEET
Sbjct: 1372 TAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEET 1431

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA F E D  RGV+EN++LGQ+AP GTG+  +YL+  ML   +       + G 
Sbjct: 1432 VEILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDIYLDQNMLNTVVSNNARFGVMGA 1491

Query: 1441 EFGMTPARSPVSGTPYHDG--MMSPGYLFSPN--LRLSPVTDA---------QFSPYVG- 1486
                    S  + T Y  G  M    Y+ +P+     SP+  A         ++ P  G 
Sbjct: 1492 IGAKDAIISDGASTQYDTGSPMQDNAYIGTPDPESNFSPIRQAGAESPGGFTEYQPTGGF 1551

Query: 1487 GMAFSP--TSSPGYSPSSP---------------------GYSPSSPGYSPTSPGYSPTS 1523
            G  FSP  TS  GYSPSSP                     G + +SP +S TSPG+SP S
Sbjct: 1552 GGGFSPAATSPAGYSPSSPFSANPTSPGYSPSSSYSPTSPGMAMTSPRFSMTSPGFSPAS 1611

Query: 1524 PGYSPTSPGYSPTSPTY---SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1580
            P ++PTSP YSPTSP Y   SP+SP YSPTSP +SPTSP+YSPTSPS+SP SP++SPTSP
Sbjct: 1612 PSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSP 1671

Query: 1581 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP-AYSPTSPSY--SPTSPS 1637
            SYSPTSP+    +   SPT    SPTSP Y+PTSP +SPTSP  YSPTSP++  SPTSP 
Sbjct: 1672 SYSPTSPAIGGAARHLSPT----SPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPG 1727

Query: 1638 YSPTSPSYSPTSPSYSPTSP 1657
              PTSP YSPTSP++SP+SP
Sbjct: 1728 -GPTSPGYSPTSPAFSPSSP 1746



 Score =  156 bits (395), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/216 (50%), Positives = 140/216 (64%), Gaps = 19/216 (8%)

Query: 1582 YSPTSPSYSPTSPSYSPTSPS-YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            Y PT       SP+   TSP+ YSP+SP  +  +      S +YSPTSP  + TSP +S 
Sbjct: 1545 YQPTGGFGGGFSPA--ATSPAGYSPSSPFSANPTSPGYSPSSSYSPTSPGMAMTSPRFSM 1602

Query: 1641 TSPSYSPTSPSYSPTSPSYSPTSPAY---SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
            TSP +SP SPS++PTSP+YSPTSPAY   SPTSP YSPTSP +SPTSP YSPTSPS++P 
Sbjct: 1603 TSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPA 1662

Query: 1698 SAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNA 1756
            S       A+SP+SP  SP SP     + + SPTS    PTSP Y+P+SP +SP+SP   
Sbjct: 1663 SP------AFSPTSPSYSPTSPAIGGAARHLSPTS----PTSPKYTPTSPGWSPTSPQTY 1712

Query: 1757 GGGNPDY--SPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
               +P++  SP+SP    S GYSP++P +SPSS  Q
Sbjct: 1713 SPTSPNFAGSPTSPGGPTSPGYSPTSPAFSPSSPRQ 1748



 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/186 (51%), Positives = 120/186 (64%), Gaps = 18/186 (9%)

Query: 1610 YSPTSPAYSPTSPAYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
            Y PT       SPA   TSP+ YSP+SP  +  +      S SYSPTSP  + TSP +S 
Sbjct: 1545 YQPTGGFGGGFSPA--ATSPAGYSPSSPFSANPTSPGYSPSSSYSPTSPGMAMTSPRFSM 1602

Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNY 1727
            TSPG+SP SPS++PTSP YSPTSP+Y             SP+SP  SP SP +SPTSPNY
Sbjct: 1603 TSPGFSPASPSFAPTSPAYSPTSPAYG----------QASPTSPSYSPTSPGFSPTSPNY 1652

Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
            SPTS S+SP SP++SP+SP+YSP+SP   GG     SP+SP    S  Y+P++PG+SP+S
Sbjct: 1653 SPTSPSFSPASPAFSPTSPSYSPTSPA-IGGAARHLSPTSPT---SPKYTPTSPGWSPTS 1708

Query: 1788 TSQYTP 1793
               Y+P
Sbjct: 1709 PQTYSP 1714


>gi|324120512|dbj|BAJ78647.1| RNA polymerase II largest subunit [Petrobiellus takunagae]
          Length = 1882

 Score = 1701 bits (4404), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 881/1625 (54%), Positives = 1121/1625 (68%), Gaps = 126/1625 (7%)

Query: 23   LSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHF 80
            LSPDEIR+MSV +  I   E  E G+PK GGL DPR G IDR+ +C+TC  NM ECPGHF
Sbjct: 1    LSPDEIRRMSVTEGGIRFSEIYEGGRPKLGGLMDPRQGVIDRQSRCQTCAGNMTECPGHF 60

Query: 81   GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NPKNRLKKIL 138
            GH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+ +      P+ RL  + 
Sbjct: 61   GHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPTNPKIKEVVMKSKGQPRKRLAHVY 120

Query: 139  DACKNKTKCEGGDEIDVPGQD------GEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQ 192
            D CK K  CEGGDE+D+ G+D      G +  K+  GGCG  QP +    + + AE+K  
Sbjct: 121  DLCKGKNICEGGDELDL-GKDIPDDPSGMQNKKQGHGGCGRYQPNIRRIALDLTAEWK-- 177

Query: 193  RKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIP 252
               N+D +      E+K  LTAERV  + K ISDE+C +LG++PKYARPDWMI+ VLP+P
Sbjct: 178  -HVNEDSQ------EKKIVLTAERVWEIFKHISDEECFILGMDPKYARPDWMIVTVLPVP 230

Query: 253  PPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT 302
            P  VRP+          DDLTH+LA II+ N  L R E+ G  AH+I+E  ++LQFH AT
Sbjct: 231  PLAVRPAVVMYGSARNQDDLTHKLADIIKANNELLRNEQAGGAAHVIAENVKMLQFHAAT 290

Query: 303  YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
              DN++PG PRA Q+SGRP+K++ +RLK KEGRIRGNLMGKRVDFSARTVITPDP + ID
Sbjct: 291  LVDNDMPGLPRAMQKSGRPLKALKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 350

Query: 363  QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK 422
            Q+GVP SIA NLT+PE VTP+NI+++++LV  G    PG   AKYIIRD+G+R+DLR+  
Sbjct: 351  QVGVPRSIAQNLTFPEIVTPFNIDKMQDLVRRGNSQYPG---AKYIIRDNGERIDLRFHP 407

Query: 423  KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 482
            K SD HL+ GYKVERH+ +GD ++FNRQP+LHKMS+MGHR+K++P+STFR+NLSVTSPYN
Sbjct: 408  KPSDLHLQCGYKVERHIREGDLIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYN 467

Query: 483  ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 542
            ADFDGDEMN+HVPQS ETRAEV  + +  + I++PQ+N+PVMGIVQDTL   RK+TKRD 
Sbjct: 468  ADFDGDEMNLHVPQSMETRAEVENIHITARQIITPQANKPVMGIVQDTLTAVRKMTKRDV 527

Query: 543  FIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN- 601
            F+EK+  MN+LM    +DGK+PQP ILKP+ +WTGKQVF+LIIP  +N+ RT + H D+ 
Sbjct: 528  FLEKEQMMNLLMHLPIWDGKMPQPAILKPKLMWTGKQVFSLIIPGNVNMIRTHSTHPDDE 587

Query: 602  DKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQ 658
            D G    ++ GDT V +E GEL+ G LCKKTLG S GSL+H+   E+G + A +F G+ Q
Sbjct: 588  DDGAYKWISPGDTKVMVEHGELVMGILCKKTLGASAGSLLHICMLELGHEVAGRFYGNIQ 647

Query: 659  WLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTM 718
             ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A +  LEP PG T+
Sbjct: 648  TVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTL 707

Query: 719  MESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNV 778
             ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNV
Sbjct: 708  RQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNV 767

Query: 779  EGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 838
            EGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVK
Sbjct: 768  EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 827

Query: 839  TSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
            T+ETGYIQRRL+KAME +MV YDGT+RNS+G +IQ  YGEDG+    +E QT  ++K+  
Sbjct: 828  TAETGYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGETVEFQTQPTIKLSN 887

Query: 899  SEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS 958
              F+K F+F+   E +      ++ + +L    E+    + E  +L+ DR  L  +I  +
Sbjct: 888  KAFEKRFKFDPQNERYLRRIFNEDIMKELMGSGEVISELEREWDQLQKDRESL-RQIFPN 946

Query: 959  GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVE 1018
            GD+   LP NL+R+IWN QK F ++ R  +D+ P++V+  V  L  +  +V G+D LS  
Sbjct: 947  GDNKAVLPCNLQRMIWNVQKIFHINKRAATDLSPLKVIRGVQNLLSKCIIVAGDDHLSRM 1006

Query: 1019 AQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAA 1078
            A  NATL F  L+R+T  ++RV +E RL+ EAFEW+IGEIE+RF Q+ V PGEM+G +AA
Sbjct: 1007 ANANATLLFQCLVRATLCTRRVAEEFRLSSEAFEWLIGEIETRFQQAQVQPGEMVGALAA 1066

Query: 1079 QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKE 1138
            QS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VFL        E
Sbjct: 1067 QSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAE 1126

Query: 1139 RAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPW 1198
            +AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD D  P KISPW
Sbjct: 1127 KAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVITEDQEFVNVYYEMPDFD--PTKISPW 1184

Query: 1199 LLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGE 1258
            LLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIMN E  K +
Sbjct: 1185 LLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSEESKFQ 1244

Query: 1259 LND---ESAEDDVFLKKIESNMLTEMALRGV----------------------------- 1286
              +   +  EDD+FL+ IE+NML++M L+G+                             
Sbjct: 1245 EEEEQVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDSKKRIVITDTGEFKA 1304

Query: 1287 -----------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
                       +L+ V+   DVD  RT SN + EI  VLGIEAVR+++  E+  V+ F G
Sbjct: 1305 IAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFAVLGIEAVRKSVEKEMNTVLQFYG 1364

Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
             YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA  AE D 
Sbjct: 1365 LYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEQDP 1424

Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEF------------G 1443
            +RGV+ENI++GQL  +GTG   L L+ E  K  IE+ +      +              G
Sbjct: 1425 MRGVSENIIMGQLPRMGTGCFDLLLDSEKCKQGIEIPMNIGAGMMGGAGMFYGSAATPSG 1484

Query: 1444 MTPARSPVS--GTPYHDGMMS---------PGYLFSPNLRLSPVTDAQ-FSPYVGGMAFS 1491
            M+P  +P +  GTP +  + S          G  FSP    S  +DA   SP  GG  FS
Sbjct: 1485 MSPQMTPWNQGGTPAYASVWSPGMGTGMTPGGPGFSP----SGSSDASGLSP--GG--FS 1536

Query: 1492 PTSSPGY-SPSSPGYSPS----SPGYS------PTSPGYSPTSPGYSPTSPGYSPTSPTY 1540
            P  SP + SPSSP  + S    SPG +      P+SP Y P+SP  +PTSP YSPTSP+Y
Sbjct: 1537 PVWSPQHGSPSSPRGATSPYIPSPGVALSPSYSPSSPAYVPSSPSLTPTSPNYSPTSPSY 1596

Query: 1541 SPSSP 1545
            SP+SP
Sbjct: 1597 SPTSP 1601



 Score = 61.6 bits (148), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 54/85 (63%), Gaps = 23/85 (27%)

Query: 1707 YSPSSPRLSPASP-YSPTSPNYSPTSS-------SYSPTSPSYSPSSPTYSPSSPYNAGG 1758
            YSP+SP+ SP SP YSPTSP YSP+SS       +Y+PTSP YSP+SPTYSP        
Sbjct: 1812 YSPTSPKYSPTSPTYSPTSPQYSPSSSKYSPTSPTYTPTSPKYSPTSPTYSPG------- 1864

Query: 1759 GNPDYSPSSPQYSPSAGYSPSAPGY 1783
              P YSP+SP Y      SP++P +
Sbjct: 1865 --PSYSPTSPTY------SPTSPLF 1881



 Score = 49.7 bits (117), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 55/120 (45%), Gaps = 44/120 (36%)

Query: 1520 SPTSPGYSPTSPGYSPT--------------------SPTYSPSSPGYSPT--SPAYSPT 1557
            S  SP  +P + G +P                     SP+ S  + G SP   SP +SP 
Sbjct: 1483 SGMSPQMTPWNQGGTPAYASVWSPGMGTGMTPGGPGFSPSGSSDASGLSPGGFSPVWSPQ 1542

Query: 1558 --SPS-----YSPTSPS---------------YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1595
              SPS      SP  PS               Y P+SPS +PTSP+YSPTSPSYSPTSP+
Sbjct: 1543 HGSPSSPRGATSPYIPSPGVALSPSYSPSSPAYVPSSPSLTPTSPNYSPTSPSYSPTSPN 1602


>gi|238487198|ref|XP_002374837.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Aspergillus flavus NRRL3357]
 gi|317143741|ref|XP_001819667.2| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus oryzae
            RIB40]
 gi|220699716|gb|EED56055.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Aspergillus flavus NRRL3357]
          Length = 1744

 Score = 1700 bits (4402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 900/1758 (51%), Positives = 1190/1758 (67%), Gaps = 119/1758 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            FPYS A +  ++ +QFG+ SP+EI++MSVV +E+ ET   +R +P+  GL+DPRLGTIDR
Sbjct: 6    FPYSKAPLRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDEQRQRPRTKGLNDPRLGTIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            +  CETC     ECPGHFGH+ELA P+FHIGF+  +  ++ +VC NC KI A+  D KF 
Sbjct: 66   QWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKANTSDSKFL 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGG---DEIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
            +AL++R+PK R   I    K+ T CE     DE +   ++  +P + + GGCG  QP + 
Sbjct: 126  EALRMRDPKRRFDHIWRLSKDITICEADPPPDEDEPYAKESSKPTRMH-GGCGNAQPTIR 184

Query: 180  IEGMKMIAEYKAQRKKNDDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
             EG+ ++  +K  +   D+ + Q PE    K+T+T +  L + + IS ED +++GL+  Y
Sbjct: 185  KEGITLVGTWKPSKSMMDEMDMQQPE----KKTITPQMALNIFRNISHEDVRIMGLSNDY 240

Query: 239  ARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+WM+L VLP+PPPPV             R  DDLT++LA I+R N+N++R E+ GAP
Sbjct: 241  ARPEWMVLTVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIVRANQNVQRCEQEGAP 300

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             H++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I SRLK KEGR+R NLMGKRV
Sbjct: 301  EHVVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRV 360

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT DP +++D++GVP SIA  LTYPE VTPYNI++L++LV  GP+  PG   A
Sbjct: 361  DFSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIDKLQQLVSNGPNEHPG---A 417

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            +YI+RD+G+R+DLR+ K++    L  G+KVERH+ DGD +LFNRQPSLHK S+MGHR+++
Sbjct: 418  RYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHVMDGDVILFNRQPSLHKESMMGHRVRV 477

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E+RAE+L+L +VP  IVSPQ N P+MG
Sbjct: 478  MPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELLQLALVPMNIVSPQRNGPLMG 537

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDTL G  KI +RDTF+ K+  MN++MW  D+DG +P P ILKPRP WTGKQ+ ++ +
Sbjct: 538  IVQDTLCGIYKICRRDTFLTKEQVMNLMMWVPDWDGVIPPPAILKPRPRWTGKQIISMAL 597

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            P  +NL R    ++   +      D  + I  G+L+ G   KKT+G S G +IH I+ E 
Sbjct: 598  PSGLNLLRVDKDNSALSEKFAPLNDGGLLIHGGQLMYGMFSKKTVGASGGGVIHTIFNEY 657

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP  A  F    Q +VNYWLL N FSIGIGDTI DA T++ I + + + K  V+ +   A
Sbjct: 658  GPGTAVAFFNGAQAIVNYWLLHNGFSIGIGDTIPDAVTIQRIENCVRERKKEVETITASA 717

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             D +LEP PG  + E+FE+KV++ LN ARDEAGS  +KSL + NN   M  +GSKGS IN
Sbjct: 718  TDNTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTIN 777

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHA
Sbjct: 778  ISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHA 837

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD+IQF+YGEDG+D   
Sbjct: 838  MAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAH 897

Query: 886  IESQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE+Q +D +K    +F   FR + MD E +  P  +  E  +++    E++   D E ++
Sbjct: 898  IENQRVDIIKCSDDQFRDRFRIDLMDPERSLGPEVL--EQANEIAGDVEVQRYLDEEWEQ 955

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            L   R  L T +A   +    LP+N++R++  A+ TF++     SD+HP EV+  V  L 
Sbjct: 956  LLKARAFLRT-VAKEDEEMMQLPINVQRILEMARTTFRIREGTISDLHPAEVIPQVQALL 1014

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
            +RL +V G+DP+S EAQ+NATL F   LRS  A +R++ E+ + + AF+ VIG IESRF 
Sbjct: 1015 DRLLIVRGDDPISQEAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAIESRFA 1074

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            ++    GEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA  IKTP
Sbjct: 1075 KANAPAGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTP 1134

Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
            S++V+ +PG    KE AK ++  +E+T+LRSVTEATE++YDPD   T+IE D + V+SY+
Sbjct: 1135 SMTVYQEPGRTHDKEGAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVIENDRDMVESYF 1194

Query: 1184 EMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
             +P ED+  +  + S WLLRI L+R  ++DK L++  VA +I Q +  D+  IF+D+NAD
Sbjct: 1195 IIP-EDVTDDSSRQSKWLLRIILSRPKLLDKGLTVQDVATRIKQAYPKDIAVIFSDNNAD 1253

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVN-------------- 1287
            + ++RIR +  +  K + +D+  E DV LKK+E ++L  + LRGVN              
Sbjct: 1254 EQVIRIRQI--QDHKEDEDDDDIEYDVTLKKLEQHLLDTLTLRGVNGVERAFINEKSKVR 1311

Query: 1288 ---------------------------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                       L  V+    VDA RT SN  IE+ EV GIEA R
Sbjct: 1312 VLEDGSLFTSKVDPLCKEWVLETSGSALGEVLAVPGVDATRTYSNQFIEVFEVFGIEAAR 1371

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             A+L EL  V++FDGSYVN+RHLA+L D MT RG+L  +TRHGINR D G +MRCSFEET
Sbjct: 1372 TAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEET 1431

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA F E D  RGV+EN++LGQ+AP GTG+  +YL+  ML   +       + G 
Sbjct: 1432 VEILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDIYLDQNMLNTVVSNNARFGVMGA 1491

Query: 1441 EFGMTPARSPVSGTPYHDG--MMSPGYLFSPN--LRLSPVTDAQFSPYVGGMAFSPTS-- 1494
                    S  + T Y  G  M    Y+ +P+     SP+  A      G   + PT   
Sbjct: 1492 IGAKDAIISDGASTQYDTGSPMQDNAYIGTPDPESNFSPIRQAGAESPGGFTEYQPTGGF 1551

Query: 1495 SPGYSPSS---PGYSPSSP---------------------GYSPTSPGYSPTSPGYSPTS 1530
              G+SP++    GYSPSSP                     G + TSP +S TSPG+SP S
Sbjct: 1552 GGGFSPAATSPAGYSPSSPFSANPTSPGYSPSSSYSPTSPGMAMTSPRFSMTSPGFSPAS 1611

Query: 1531 PGYSPTSPTYSPSSPGY---SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1587
            P ++PTSP YSP+SP Y   SPTSP+YSPTSP +SPTSP+YSPTSPS+SP SP++SPTSP
Sbjct: 1612 PSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSP 1671

Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP-SYSPTSPSY--SPTSPS 1644
            SYSPTSP+    +   SPTSP    TSP Y+PTSP +SPTSP +YSPTSP++  SPTSP 
Sbjct: 1672 SYSPTSPAIGGAARHLSPTSP----TSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPG 1727

Query: 1645 YSPTSPSYSPTSPSYSPT 1662
              PTSP YSPTSP++SP+
Sbjct: 1728 -GPTSPGYSPTSPAFSPS 1744



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/215 (51%), Positives = 136/215 (63%), Gaps = 32/215 (14%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPA-YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
            Y PT       SP+   TSPA YSP+SP  +  +      S SYSPTSP  + TSP +S 
Sbjct: 1545 YQPTGGFGGGFSPA--ATSPAGYSPSSPFSANPTSPGYSPSSSYSPTSPGMAMTSPRFSM 1602

Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGY---SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            TSP +SP SPS++PTSPAYSPTSP Y   SPTSPSYSPTSP +SPTSP+Y          
Sbjct: 1603 TSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNY---------- 1652

Query: 1705 LAYSPSSPRLSPASP-YSPTSPNYSPTS----------SSYSPTSPSYSPSSPTYSPSSP 1753
               SP+SP  SPASP +SPTSP+YSPTS          S  SPTSP Y+P+SP +SP+SP
Sbjct: 1653 ---SPTSPSFSPASPAFSPTSPSYSPTSPAIGGAARHLSPTSPTSPKYTPTSPGWSPTSP 1709

Query: 1754 YNAGGGNPDY--SPSSPQYSPSAGYSPSAPGYSPS 1786
                  +P++  SP+SP    S GYSP++P +SPS
Sbjct: 1710 QTYSPTSPNFAGSPTSPGGPTSPGYSPTSPAFSPS 1744



 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/186 (51%), Positives = 120/186 (64%), Gaps = 18/186 (9%)

Query: 1610 YSPTSPAYSPTSPAYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
            Y PT       SPA   TSP+ YSP+SP  +  +      S SYSPTSP  + TSP +S 
Sbjct: 1545 YQPTGGFGGGFSPA--ATSPAGYSPSSPFSANPTSPGYSPSSSYSPTSPGMAMTSPRFSM 1602

Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNY 1727
            TSPG+SP SPS++PTSP YSPTSP+Y             SP+SP  SP SP +SPTSPNY
Sbjct: 1603 TSPGFSPASPSFAPTSPAYSPTSPAYG----------QASPTSPSYSPTSPGFSPTSPNY 1652

Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
            SPTS S+SP SP++SP+SP+YSP+SP   GG     SP+SP    S  Y+P++PG+SP+S
Sbjct: 1653 SPTSPSFSPASPAFSPTSPSYSPTSPA-IGGAARHLSPTSPT---SPKYTPTSPGWSPTS 1708

Query: 1788 TSQYTP 1793
               Y+P
Sbjct: 1709 PQTYSP 1714


>gi|324120582|dbj|BAJ78682.1| RNA polymerase II largest subunit [Eretes sticticus]
          Length = 1677

 Score = 1699 bits (4400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 886/1630 (54%), Positives = 1129/1630 (69%), Gaps = 116/1630 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV +  I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPLRYVKRVQFGILSPDEIRRMSVTEGGIRFPETMEAGRPKLGGLMDPRQGVIDRHSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L   ++ K K+ +
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHVGFVTKTIKILRCVCFYCSKLLVSPNNPKIKEVV 125

Query: 126  KIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPL---KKNKGGCGAQQPKLTI 180
                  P+ RL  + D CK K  CEGGDE+DV  ++ EE +   K+  GGCG  QP +  
Sbjct: 126  MKSKGQPRKRLAFVYDLCKGKNICEGGDEMDV-NKENEENVPGKKQGHGGCGRYQPNIKR 184

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+ ++AE+K     N+D +      E+K +L+AERV  +LK I+DE+C +LG++PK+AR
Sbjct: 185  TGLDLVAEWK---HINEDSQ------EKKISLSAERVWEILKHITDEECFILGMDPKFAR 235

Query: 241  PDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMI+ VLP+PP             +  DDLTH+LA II+ N  L+R E  GA AH+IS
Sbjct: 236  PDWMIVTVLPVPPLPVRPAVVMYGSAKNQDDLTHKLADIIKANNELQRNEAAGAAAHVIS 295

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSAR
Sbjct: 296  ENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 355

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDP + IDQ+GVP SIA NLT+PE VTP+N +++ ELV+ G    PG   AKYI+R
Sbjct: 356  TVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNFDKMMELVQRGNSQYPG---AKYIVR 412

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+ST
Sbjct: 413  DNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWST 472

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDT
Sbjct: 473  FRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDT 532

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L   RK+TKRD FI+K+  MNILM+   +DGK+P+P ILKP+PLWTGKQVF+LIIP  +N
Sbjct: 533  LTAVRKMTKRDVFIDKEQMMNILMFLPIWDGKMPRPAILKPKPLWTGKQVFSLIIPGNVN 592

Query: 591  LFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            + RT + H D+ D G    ++ GDT V +E GEL+ G LCKKTLG S GSL+H+ + E+G
Sbjct: 593  MIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGASAGSLLHICFLELG 652

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A 
Sbjct: 653  HEVCGRFYGNIQTVINTWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAH 712

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INI
Sbjct: 713  NMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINI 772

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAM
Sbjct: 773  SQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAM 832

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +
Sbjct: 833  GGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGELV 892

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E QTL ++K+    F+K FRF+   E        ++ I  L    E+    + E ++L  
Sbjct: 893  EFQTLPTVKLSNKAFEKKFRFDPSNERHLRRIFNEDIIRQLMGSGEVISELEREWEQLSK 952

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L  +I  +G+S   LP NL+R+IWN QK F ++ R  +D+ P+ V++ V +L +R 
Sbjct: 953  DREAL-RQIFPTGESKVVLPCNLQRMIWNVQKIFHINKRGTTDLSPLRVIQGVRELLQRC 1011

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +V GED LS +A +NATL F  L+R+T  +K V +E RL+ EAFEW+IGEIE+RF Q+ 
Sbjct: 1012 VIVAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGEIETRFQQAQ 1071

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
             APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+
Sbjct: 1072 CAPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLT 1131

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMP
Sbjct: 1132 VFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIPEDQEFVNVYYEMP 1191

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            D D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LR
Sbjct: 1192 DFD--PNRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLR 1249

Query: 1247 IRIMN-DEAPKGELN-DESA---EDDVFLKKIESNMLTEMALRGV--------------- 1286
            IRIMN D+   GE   DE     +DD+FL+ IE+NML++M L+G+               
Sbjct: 1250 IRIMNTDDGKFGEAGADEEVDKMDDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDA 1309

Query: 1287 -------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                     +++ V+   DVD  RT SN + EI  VLGIEAVR+
Sbjct: 1310 KKRIVITETGEFKAIAEWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFAVLGIEAVRK 1369

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETV
Sbjct: 1370 SVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETV 1429

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLE 1441
            D+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  I +   +  + L 
Sbjct: 1430 DVLMDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKAGIAIPQATGADLLS 1489

Query: 1442 FGM------TPARSP------VSGTPYHDGMM---SPGYLFSPNLRLSPVTDAQFSPYVG 1486
             GM      TP+ SP       +GTPY  G +   S GYL S                 G
Sbjct: 1490 SGMFFSSAATPSMSPNMTPWNHAGTPYGAGSVWSPSQGYLGS-------------GATPG 1536

Query: 1487 GMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP- 1545
            G AFSP++S   S  SP Y+     + P SP  SP        SP YSP+SP ++PSSP 
Sbjct: 1537 GAAFSPSASSDASGMSPNYA-----WPPHSPAMSPYGASPRAQSPSYSPSSPVFAPSSPS 1591

Query: 1546 GYSPTSPAYS 1555
              +PTSP Y 
Sbjct: 1592 AMTPTSPIYC 1601



 Score = 44.3 bits (103), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 63/123 (51%), Gaps = 5/123 (4%)

Query: 1507 PSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSP 1566
            P + G    S G   +S      SP  +P +   +P   G S  SP+        +P   
Sbjct: 1480 PQATGADLLSSGMFFSSAATPSMSPNMTPWNHAGTPYGAG-SVWSPSQGYLGSGATPGGA 1538

Query: 1567 SYSPTSPS-YSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP-AYSPTSP 1622
            ++SP++ S  S  SP+Y+  P SP+ SP   S    SPSYSP+SP ++P+SP A +PTSP
Sbjct: 1539 AFSPSASSDASGMSPNYAWPPHSPAMSPYGASPRAQSPSYSPSSPVFAPSSPSAMTPTSP 1598

Query: 1623 AYS 1625
             Y 
Sbjct: 1599 IYC 1601



 Score = 40.4 bits (93), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 12/111 (10%)

Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY----SPTSPTYSPTSPSYNPQSAKY 1701
            S  +PS SP   + +P + A +P   G S  SPS     S  +P  +  SPS +  ++  
Sbjct: 1496 SAATPSMSP---NMTPWNHAGTPYGAG-SVWSPSQGYLGSGATPGGAAFSPSASSDASGM 1551

Query: 1702 SPSLAYSPSSPRLSP--ASPYSPTSPNYSPTSSSYSPTSPS-YSPSSPTYS 1749
            SP+ A+ P SP +SP  ASP + +  +YSP+S  ++P+SPS  +P+SP Y 
Sbjct: 1552 SPNYAWPPHSPAMSPYGASPRAQSP-SYSPSSPVFAPSSPSAMTPTSPIYC 1601



 Score = 40.4 bits (93), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 57/106 (53%), Gaps = 7/106 (6%)

Query: 1576 SPTSPSYSPTSPSYSPTSPSY---SPTSPSYSPTSPAYSPTSPAYSPTSPA-YSPTSPSY 1631
            S  +PS SP    ++     Y   S  SPS        +P   A+SP++ +  S  SP+Y
Sbjct: 1496 SAATPSMSPNMTPWNHAGTPYGAGSVWSPSQGYLGSGATPGGAAFSPSASSDASGMSPNY 1555

Query: 1632 S--PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-AYSPTSPGYS 1674
            +  P SP+ SP   S    SPSYSP+SP ++P+SP A +PTSP Y 
Sbjct: 1556 AWPPHSPAMSPYGASPRAQSPSYSPSSPVFAPSSPSAMTPTSPIYC 1601


>gi|296822712|ref|XP_002850330.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
            113480]
 gi|238837884|gb|EEQ27546.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
            113480]
          Length = 1748

 Score = 1699 bits (4400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 919/1775 (51%), Positives = 1198/1775 (67%), Gaps = 145/1775 (8%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTI 60
             RFPYS A++  ++ +QFG+LSP+EI++MSV  +E+ ET   +R +P+  GL+DPRLGTI
Sbjct: 4    VRFPYSKAQLRTIKEIQFGLLSPEEIKRMSVCHVEYPETMDDQRQRPREKGLNDPRLGTI 63

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DR  +C TC   + +CPGHFGH+EL+ P+FHIGF+  +  ++ +VC NC KI A+  D K
Sbjct: 64   DRNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQK 123

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGG--DEIDVPGQDGEEPLKKNKGGCGAQQPKL 178
            +  AL+ R+PK R   I    K+   CE    +E D   ++  +P++ + GGCG  QP++
Sbjct: 124  YLDALRFRDPKKRFDAIWRLSKDILICEADPPEEDDPFAKESSKPVQGH-GGCGNVQPQV 182

Query: 179  TIEGMKMIAEYKAQRKKN---DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
              EG+ ++  +K  + ++   D++ Q PE    K+ +T +  L + + IS+ED +L+GL+
Sbjct: 183  RKEGITLMGTWKPSKMRDMMDDNEIQQPE----KKQITPQMALTIFRNISEEDVRLMGLS 238

Query: 236  PKYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WMI+ VLP+PPPPV             R  DDLT++LA IIR N+N+ R E+ 
Sbjct: 239  NDYARPEWMIITVLPVPPPPVRPSVLVGGSGTGQRGEDDLTYKLAEIIRANQNVTRCEQE 298

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P H++ EF  LLQ+H+ATY DN++ G P+A Q+S RP+K+I  RLK KEGR+R NLMG
Sbjct: 299  GSPEHVVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMG 358

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT DP +++D++GVP SIA  LTYPE VTPYNI RL +LV+ GP   PG 
Sbjct: 359  KRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNGPDVHPG- 417

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
              A+Y+IR  G+R+DLR+ K     + L+ G+KVERHL DGDF+LFNRQPSLHK S+M H
Sbjct: 418  --ARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSLHKESMMSH 475

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
            R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L +VP  IVSPQ N 
Sbjct: 476  RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVSPQRNG 535

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
            P+MGIVQDTL G  KI +RD F+ K+  MNIL+W  D+DG +PQP ILKPRP W+GKQ+ 
Sbjct: 536  PLMGIVQDTLCGIYKICRRDVFLTKEQVMNILLWVPDWDGVLPQPAILKPRPRWSGKQMI 595

Query: 582  NLIIPKQINLFRTAAWHADNDKGILTA-----GDTLVRIEKGELLSGTLCKKTLGTSTGS 636
            ++++P  +NL R      D DK  ++       D  V +  GEL+ G   KKT+G S G 
Sbjct: 596  SMVLPPGLNLLRI-----DKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVGASGGG 650

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            ++H I+ E GP+ A  F    Q +VNYWLL N FSIGIGDTI D  T++ I + +   K 
Sbjct: 651  VVHTIFNEYGPEVAMSFFNGAQTVVNYWLLHNGFSIGIGDTIPDLATIQKIENAVRVRKE 710

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
             V  +   A + +LE  PG  + E+FE+KV++ LN ARDEAG++ +KSL +SNN   M  
Sbjct: 711  EVDTITASATENTLEALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMAR 770

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
            +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGL
Sbjct: 771  SGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGL 830

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
            TP EFFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD++QFLY
Sbjct: 831  TPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIVQFLY 890

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEEN-WNPNYMLQ--EYIDDLKTIKE 932
            GEDG+D   IE+Q +D +K    +F   FR + MD E   +P+ + Q  E   D++  K 
Sbjct: 891  GEDGLDGQCIENQRVDVIKCSDEQFRNRFRVDLMDPERLLSPDILEQATEIAGDIEVQKH 950

Query: 933  LRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHP 992
            L    D E ++L  DR  L T +    D    LP+N++R++ +A+ TF++     SD+HP
Sbjct: 951  L----DEEWEQLLKDRAFLRT-VVKEDDEMMQLPINIQRILESAKTTFRIRDGTISDLHP 1005

Query: 993  MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1052
             EVV  V +L +RL VV G+DPLS EAQ+NATL F   LRS  A +R++ E+ L + AF+
Sbjct: 1006 AEVVPQVRQLLDRLLVVRGDDPLSREAQENATLLFKAQLRSRLAFRRLVVEYSLNKLAFQ 1065

Query: 1053 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1112
             V+G IESRF ++   PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+E
Sbjct: 1066 HVLGAIESRFGKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKE 1125

Query: 1113 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1172
            I+NVA  IKTPS++V+  P     KE AK ++  +E+T+LRSVTE+TE++YDPD   T+I
Sbjct: 1126 ILNVATNIKTPSMTVYQAPECRMDKESAKQLRSIVEHTSLRSVTESTEIYYDPDIQSTVI 1185

Query: 1173 EEDVEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDD 1230
            E D++ V+SY+ +P ED+A +  + S WLLRI L+R  ++DK L++  VA KI + +  D
Sbjct: 1186 ENDIDMVESYFIIP-EDVADDSSRQSKWLLRIILSRPKLLDKGLTVQDVATKIKEAYPQD 1244

Query: 1231 LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---- 1286
            +  IF+D+NAD+ ++RIR + D  PK + +D+  E DV LKK+ES++L  + LRGV    
Sbjct: 1245 IAVIFSDNNADEQVVRIRQIQD--PKQDEDDDDTEYDVTLKKLESHLLDTLTLRGVPGIE 1302

Query: 1287 -------------------------------------NLLAVMCHEDVDARRTTSNHLIE 1309
                                                  L  V+    +DA RT SN  +E
Sbjct: 1303 RAFINEKSRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRTYSNQFVE 1362

Query: 1310 IIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1369
            I+EV GIEA R ALL EL  V++FDGSYVN+RHLA+L D MT RG LMA+TRHGINR DT
Sbjct: 1363 ILEVFGIEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADT 1422

Query: 1370 GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI 1429
            G +MRCSFEETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+  +YL+  ML   +
Sbjct: 1423 GALMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQSMLMGVV 1482

Query: 1430 ELQLPSYMEGLEF-GMT---PARSPVSGTPYHDGMMSPGYLFS--PNLRLSPVTDAQFSP 1483
                     G E  GM     A    SG+P  + M    Y+ S  P+ + SPV  A    
Sbjct: 1483 SNNAGLGAVGGEHKGMLSDGAATQYDSGSPMQENM----YISSPDPDSQFSPVRQAGSEN 1538

Query: 1484 YVGGMAFSPTSSPGYSPSSP-----GYSPSSP-GYSPTSPGYSPTSPGYSPTSPGYSPTS 1537
             VG   + P S  G+SP  P     GYSPSSP   SPTSP YSP+S GYSPTSPG S TS
Sbjct: 1539 AVGFADYQPPSYGGFSPHEPRSPGGGYSPSSPFNTSPTSPAYSPSS-GYSPTSPGMSITS 1597

Query: 1538 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY----SPTSPSYSPTSPS------------ 1581
            P +  SSP +SP SP+++PTSP+YSPTSP Y    SPTSPSYSPTSP             
Sbjct: 1598 PRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTS 1656

Query: 1582 ---------YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP-SY 1631
                     +SPTSPSYSPTSP+   T    SPT    SPTSP Y+PTSP +SPTSP +Y
Sbjct: 1657 PSFSPASPVFSPTSPSYSPTSPALGGTGRHLSPT----SPTSPKYTPTSPGWSPTSPEAY 1712

Query: 1632 SPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSP 1664
            SPTSP++  SPTSP   PTSP YSPTSP+++PTSP
Sbjct: 1713 SPTSPNFSGSPTSPG-GPTSPGYSPTSPTFNPTSP 1746



 Score =  142 bits (358), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/235 (45%), Positives = 144/235 (61%), Gaps = 33/235 (14%)

Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA--YSPTSP-AYSPTSPSY 1631
            +SP   + S  +  ++   P      PSY   SP + P SP   YSP+SP   SPTSP+Y
Sbjct: 1528 FSPVRQAGSENAVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1580

Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY----SPTSPTY 1687
            SP+S  YSPTSP  S TSP +  +SP++SP SP+++PTSP YSPTSP Y    SPTSP+Y
Sbjct: 1581 SPSS-GYSPTSPGMSITSPRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1638

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS----------SSYSPT 1737
            SPTSP ++P S  YSP+      +  +     +SPTSP+YSPTS          S  SPT
Sbjct: 1639 SPTSPGFSPTSPSYSPTSPSFSPASPV-----FSPTSPSYSPTSPALGGTGRHLSPTSPT 1693

Query: 1738 SPSYSPSSPTYSPSSPYNAGGGNPDY--SPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
            SP Y+P+SP +SP+SP      +P++  SP+SP    S GYSP++P ++P+S  Q
Sbjct: 1694 SPKYTPTSPGWSPTSPEAYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFNPTSPRQ 1748



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 101/208 (48%), Gaps = 66/208 (31%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG--YSPTSP-SYSPTSPTY 1687
            +SP   + S  +  ++   P      PSY   SP + P SPG  YSP+SP + SPTSP Y
Sbjct: 1528 FSPVRQAGSENAVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1580

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY------ 1741
            SP+S               YSP+SP +S  SP   +SP +SP S S++PTSP+Y      
Sbjct: 1581 SPSS--------------GYSPTSPGMSITSPRFISSPAFSPASPSFAPTSPAYSPTSPG 1626

Query: 1742 -----SPSSPTYSPSSPYNAGGGNPD-------------YSPSSPQYSPSA--------- 1774
                 SP+SP+YSP+SP  +                   +SP+SP YSP++         
Sbjct: 1627 YGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRH 1686

Query: 1775 ---------GYSPSAPGYSPSSTSQYTP 1793
                      Y+P++PG+SP+S   Y+P
Sbjct: 1687 LSPTSPTSPKYTPTSPGWSPTSPEAYSP 1714


>gi|405120884|gb|AFR95654.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus
            neoformans var. grubii H99]
          Length = 1786

 Score = 1698 bits (4397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 903/1813 (49%), Positives = 1179/1813 (65%), Gaps = 155/1813 (8%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT-ERGKPKPGGLSDPRLGT 59
            M   FPYS A V +V+ +QFGI+SP+EI+  SV +IE  E   E GK K GGL DP++GT
Sbjct: 1    MTVTFPYSSAPVKQVKEIQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGT 60

Query: 60   IDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH 119
            IDR  KC+TC   M+ECPGHFGH+ELA+P+FH GF+  V  I+  VC++C K+  D  D 
Sbjct: 61   IDRNFKCQTCLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDP 120

Query: 120  KFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK-----------KNK 168
                A++    ++RLK I    K+K  CE  DE+D    +G+   +           K  
Sbjct: 121  MVANAVRRIKAQHRLKAIWALAKDKKICEP-DELD-EKDNGDATFEDEYLQEQKAALKGH 178

Query: 169  GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDED 228
            GGCG +QP    +G+K++  +K   K  D+     EP ER   ++   V  +LK+I+ ED
Sbjct: 179  GGCGHEQPVWRKKGLKLMGVWKPTDKGEDEA---AEPEER--NVSPGEVYNILKKITPED 233

Query: 229  CQLLGLNPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLR 277
              ++GLN  YARPDWMIL VLP+PP  VRPS           DDLT++L+ II+ N  +R
Sbjct: 234  LHIMGLNADYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSEDDLTYKLSQIIKFNGVVR 293

Query: 278  RQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIR 337
            R E  G P  +++E   LLQ+H+ TY DN++ G PR  Q+ GR IK+I +RLK KEGR+R
Sbjct: 294  RMEAEGVPPSVVNEQFDLLQYHVCTYMDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMR 353

Query: 338  GNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPH 397
            GNLMGKRVDFSARTVIT DP + +DQ+GVP SIA+ LTYPE VTPYNI  L+ LV  GP 
Sbjct: 354  GNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPA 413

Query: 398  PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 457
              PG   A+Y ++D G+R+DL+Y K      L+ G+ VERHL DGD+VLFNRQPSLHKMS
Sbjct: 414  TYPG---ARYYVKDTGERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHKMS 470

Query: 458  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 517
            +M HR+K+M YSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ ++  VP+ IVSP
Sbjct: 471  MMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSP 530

Query: 518  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTG 577
            Q+N+PVMGIVQDTL G RK T RD F++     +IL+W  +++G +P P I KP+P+WTG
Sbjct: 531  QANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWNGTIPPPAIFKPKPMWTG 590

Query: 578  KQVFNLIIPKQINLFRTAAWHADNDK-GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGS 636
            KQ+ ++ IPK IN+      + +N+K   +   D  V IE GEL+ GT+ K   G++   
Sbjct: 591  KQLLSMTIPKGINIT-----YKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNG 645

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            L+HVI+ E+G  AAR F    Q +VNYWLL   FS+GIGDTI D  TM  I + + +AK 
Sbjct: 646  LVHVIFRELGHIAARDFFSAVQRVVNYWLLHYGFSVGIGDTIVDKATMAGITNRMVEAKE 705

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
             V+ LI++A+   ++P+PG T+ E+ E  +   LN ARD  G + Q +L   NN+K MV 
Sbjct: 706  AVQKLIQEAEANRMKPKPGMTIRETLEASIAAELNKARDWTGKTTQDNLKADNNVKQMVV 765

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
            +G+KGSFINISQM+  VGQQ VEGKRI FGF  R+LPHF++DDYGPESRGFVENSYLRGL
Sbjct: 766  SGAKGSFINISQMSGVVGQQFVEGKRISFGFRHRSLPHFSRDDYGPESRGFVENSYLRGL 825

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
            TPQEF+FHAMGGREGLIDTAVKT+ETGYIQRRLVKAMED+ V YDGTVRNS+ +V+QFLY
Sbjct: 826  TPQEFWFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDLKVAYDGTVRNSVNEVVQFLY 885

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDV 936
            GEDGMD   +E Q+LD +++    F++ ++ ++   +     +LQ  ID  ++   L+ +
Sbjct: 886  GEDGMDGAAMEKQSLDIIRLSDRAFERRYKIDVLGGSGFSKGVLQAGID--QSSISLQKL 943

Query: 937  FDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVV 996
             D E  ++  DR  L +EI   G    PLPVN++R+I N+Q+ F +DPR PSD+ P+ ++
Sbjct: 944  LDEEFAQISEDRRILRSEIYPDGTPGHPLPVNIQRVIQNSQQIFHIDPRVPSDLDPVYLL 1003

Query: 997  EAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIG 1056
            E  + L +RL VV G+D LS  AQKNATL FN+LLRS  A++RVL+E+ L REAF+WVIG
Sbjct: 1004 EQREALADRLLVVRGDDKLSRAAQKNATLVFNMLLRSHLATRRVLEEYHLNREAFDWVIG 1063

Query: 1057 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1116
            E+E  F +++V   EM+G +AAQSIGEPATQMTLNTFHYAGV++K+VT GVPRL+EIINV
Sbjct: 1064 EVEQIFNKAVVNAAEMVGTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINV 1123

Query: 1117 AKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDV 1176
            A  I+TP+L+V+L P  + T+E A  +   L YT LR +T   E++YDP    T IEED 
Sbjct: 1124 AVNIRTPALNVYLDPEYSKTEEDAHQIMRKLTYTRLRDITATVEIFYDPKLDSTDIEEDK 1183

Query: 1177 EFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
            +FV +++ +PDEDI  E  SPWLLR+EL+R  +++    M+ + + I      D+  I +
Sbjct: 1184 DFVDAFFAIPDEDIRLELHSPWLLRLELDRAKVLEGGYEMSQIVDAIADTVGKDVFVIHS 1243

Query: 1237 DDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMAL------------- 1283
            +DNA KL++RIR++ ++  +  L DE    D+FLK+IE  +L ++ L             
Sbjct: 1244 EDNAPKLVIRIRVVAEKEDEELLGDE----DMFLKRIEGTLLDQVELGGITGITRVFISE 1299

Query: 1284 ----------------------RGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                   G+NL AVM  + V+A RT SN+  E+ E LGIEA R 
Sbjct: 1300 GKQVVVSQNGEYDQEKEWFLETDGINLKAVMAVDGVNAFRTYSNNCYEVYETLGIEAARN 1359

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            AL  EL  VI   GSYVNYRHLA+LCD M  +G LM+ITRHGINR D G + R +FEETV
Sbjct: 1360 ALYKELNGVIEMGGSYVNYRHLALLCDLMCSKGALMSITRHGINRTDAGALSRAAFEETV 1419

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI-ELQLPS---YM 1437
            +ILL+AA   + D  +GV EN++LGQ+AP+GTG   + L+  MLK+ I + +LP      
Sbjct: 1420 EILLEAAAVGDVDDCKGVAENVLLGQMAPMGTGAFDVSLDMNMLKDVIVDHRLPVQNMMA 1479

Query: 1438 EGLEFGMTPARSPVSGTPYHDGMMSPGY----------LFSPNLRLSPVTDAQF------ 1481
             G+  GMTP  +    TPY +  +SP +           FSP    +      F      
Sbjct: 1480 AGIAGGMTPGGAM---TPYDN--LSPMWGGDKGALGHAAFSPIQSSANDEGGNFAYMGYG 1534

Query: 1482 -SPYVGGMA---FSPTSSPGYSPSSPGYSPSSPGYSPTSP----------------GYSP 1521
             SP  GG++   +SP+S  GYSP+SP ++ +SP YSPTSP                GY  
Sbjct: 1535 QSPMHGGISPAGYSPSSPAGYSPTSP-FAVTSPAYSPTSPFAGAAAGGASPWVGRGGYGA 1593

Query: 1522 TSPGYSPTSPGYSPTSP---------------------TYSPSSPG-----YSPTSPAYS 1555
            TSP YSPTSP YSPTSP                      Y  +  G     YSPTSPAYS
Sbjct: 1594 TSPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPASPAYGGAGAGNRASPYSPTSPAYS 1653

Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPAYSPTS 1614
            PTSP    TSP YSPTSP YSPTSP++SPTSPSYSPTSP+ +  TSP YSPTSP +SPTS
Sbjct: 1654 PTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTS 1713

Query: 1615 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 1674
            P YSP SPAYSPTSP YSPTSP+YSPTSP+YSPTSP+Y   +P+            PG+ 
Sbjct: 1714 PTYSPASPAYSPTSPQYSPTSPAYSPTSPAYSPTSPTYGGAAPNGGTAQQQNGQARPGWG 1773

Query: 1675 PTSPSYSPTSPTY 1687
             T   Y  TSP++
Sbjct: 1774 NTG-GYG-TSPSW 1784



 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/271 (45%), Positives = 149/271 (54%), Gaps = 61/271 (22%)

Query: 1553 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPAYS 1611
            A+SP   S +    +++      SP     SP    YSP+SP+ YSPTSP ++ TSPAYS
Sbjct: 1513 AFSPIQSSANDEGGNFAYMGYGQSPMHGGISPAG--YSPSSPAGYSPTSP-FAVTSPAYS 1569

Query: 1612 PTSPAYSPTSPAYSP--TSPSYSPTSPSYSPTSPSYSPTSPS------------------ 1651
            PTSP     +   SP      Y  TSP+YSPTSP YSPTSP                   
Sbjct: 1570 PTSPFAGAAAGGASPWVGRGGYGATSPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPA 1629

Query: 1652 ---------------YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
                           YSPTSP+YSPTSP    TSP YSPTSP YSPTSP +SPTSPSY+P
Sbjct: 1630 SPAYGGAGAGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSP 1689

Query: 1697 QSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNA 1756
             S        +  +SPR      YSPTSP +SPTS +YSP SP+YSP+SP YSP+SP   
Sbjct: 1690 TSPA-----PFQATSPR------YSPTSPQFSPTSPTYSPASPAYSPTSPQYSPTSPA-- 1736

Query: 1757 GGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
                  YSP+SP YSP+   SP+  G +P+ 
Sbjct: 1737 ------YSPTSPAYSPT---SPTYGGAAPNG 1758



 Score = 93.6 bits (231), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 107/236 (45%), Gaps = 81/236 (34%)

Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
            A+SP   S +    +++      SP     SP    YSP+SPA      GYSPTSP ++ 
Sbjct: 1513 AFSPIQSSANDEGGNFAYMGYGQSPMHGGISPAG--YSPSSPA------GYSPTSP-FAV 1563

Query: 1683 TSPTYSPTSPSYNPQSAKYSPSLA---YSPSSPRLSPASPYSPTSPNYSPTS-------- 1731
            TSP YSPTSP     +   SP +    Y  +SP       YSPTSP YSPTS        
Sbjct: 1564 TSPAYSPTSPFAGAAAGGASPWVGRGGYGATSP------AYSPTSPQYSPTSPQFSPTSP 1617

Query: 1732 -------------------------SSYSPTSPSY------------------------- 1741
                                     S YSPTSP+Y                         
Sbjct: 1618 SFSPSSPTYSPASPAYGGAGAGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTS 1677

Query: 1742 ---SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTP 1793
               SP+SP+YSP+SP      +P YSP+SPQ+SP++  YSP++P YSP+S  QY+P
Sbjct: 1678 PAFSPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSPTYSPASPAYSPTS-PQYSP 1732


>gi|324120514|dbj|BAJ78648.1| RNA polymerase II largest subunit [Nipponatelura sp. 66-1]
          Length = 1718

 Score = 1698 bits (4397), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 878/1630 (53%), Positives = 1126/1630 (69%), Gaps = 108/1630 (6%)

Query: 23   LSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHF 80
            +SPDEIR+MSV +  I + ET E G+PK GGL DPR G +DR  +C+TC  NM ECPGHF
Sbjct: 1    ISPDEIRRMSVSEGGIRYPETMEGGRPKLGGLMDPRQGVMDRHSRCQTCAGNMTECPGHF 60

Query: 81   GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-ALKIR-NPKNRLKKIL 138
            GH++LAKP+FH+GF+  V+ ++R VCF CSK+L    + K K+  +K +  P+ RL  + 
Sbjct: 61   GHIDLAKPVFHVGFLTKVIKVLRCVCFYCSKLLVSPSNPKIKEIVMKSKGQPRKRLAFVY 120

Query: 139  DACKNKTKCEGGDEIDVPGQDGEEPLKKNK----GGCGAQQPKLTIEGMKMIAEYKAQRK 194
            D CK K  CEGGDE+D+     ++P ++N+    GGCG  QP +   G+ M AE+K    
Sbjct: 121  DLCKGKNICEGGDEMDLHKDMPDDPSQQNRKAGHGGCGRYQPSIRRAGLDMTAEWK---H 177

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
             N+D +      E+K +L+AERV  + K+IS+E+C +LG++PK+ARPDWMI  VLP+PP 
Sbjct: 178  INEDSQ------EKKISLSAERVWEIFKQISEEECFILGMDPKFARPDWMICTVLPVPPL 231

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLTH+L+ II+ N  L R E+ GA AH+I+E  ++LQFH+AT  
Sbjct: 232  PVRPAVVMYGSARNQDDLTHKLSDIIKSNNELMRNEQAGAAAHVIAENIKMLQFHVATLV 291

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++PG PRA Q+SG+P+K++ SRLK KEGRIRGNLMGKRVDFSARTVITPDP + IDQ+
Sbjct: 292  DNDMPGLPRAMQKSGKPLKALKSRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 351

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA NLT+PE VTP+NI+++++LV+ G    PG   AKYI+RD+G+R+DLR+  K 
Sbjct: 352  GVPRSIAQNLTFPEIVTPFNIDQMQDLVQRGNSQYPG---AKYIVRDNGERIDLRFHPKP 408

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
            SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+STFR+NLSVTSPYNAD
Sbjct: 409  SDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNAD 468

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL   RK+TKRD F+
Sbjct: 469  FDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFL 528

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DK 603
            EK+  MN+LM    +DGK+PQPTILKP+PLWTGKQVF+LIIP  +N+ RT + H D  D 
Sbjct: 529  EKEQMMNLLMHLPIWDGKMPQPTILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDD 588

Query: 604  G---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
            G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E+G +   +F G+ Q +
Sbjct: 589  GPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQTV 648

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            +N WLL    SIGIGDTIAD +T   I   I KAK +V  +I +A +  LEP PG T+ +
Sbjct: 649  INNWLLLEGHSIGIGDTIADPQTYAEIQKAIKKAKEDVIEVIHKAHNMELEPTPGNTLRQ 708

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INISQ+ ACVGQQNVEG
Sbjct: 709  TFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEG 768

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+
Sbjct: 769  KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 828

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E Q L ++K+    
Sbjct: 829  ETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSNKA 888

Query: 901  FDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGD 960
            F+K F+F+   E +      ++ + +L    E+    + E ++L  DR  L  +I  SGD
Sbjct: 889  FEKRFKFDPTNERYLRRVFNEDVLRELMGSGEVISELEKEWEQLVKDREAL-RQIFPSGD 947

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
            +    P NL+R+IWN QK F ++ R P+D+ P+ V++ V +L ++  +V GED LS +A 
Sbjct: 948  NKVVQPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVQELLKKCIIVAGEDHLSKQAN 1007

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            KNATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+ V PGEM+G +AAQS
Sbjct: 1008 KNATLLFQCLVRSTLCTKCVAEEFRLSAEAFEWLIGEIETRFQQAQVQPGEMVGALAAQS 1067

Query: 1081 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERA 1140
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VFL        E+A
Sbjct: 1068 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGVAARDAEKA 1127

Query: 1141 KNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLL 1200
            KNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD D  P +ISPWLL
Sbjct: 1128 KNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFD--PTRISPWLL 1185

Query: 1201 RIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELN 1260
            RIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIMN +  K +  
Sbjct: 1186 RIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKFQDE 1245

Query: 1261 DESA---EDDVFLKKIESNMLTEMALRGV------------------------------- 1286
            +E     EDD+FL+ IE+NML++M L+G+                               
Sbjct: 1246 EEQVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSKKRIVITETGEFKAIA 1305

Query: 1287 ---------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSY 1337
                     +L+ V+   DVD  RT SN + EI  VLGIEAVR+++  E+  V+ F G Y
Sbjct: 1306 EWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNAVLQFYGLY 1365

Query: 1338 VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLR 1397
            VNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA  AE D +R
Sbjct: 1366 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMR 1425

Query: 1398 GVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYH 1457
            GV+ENI++GQL  +GTG   L L+ E  K+ IE+   +    +        S  + TP  
Sbjct: 1426 GVSENIIMGQLPRMGTGAFDLLLDAEKCKHGIEIAPGAGAGMMGGAGMFFGS--AATP-- 1481

Query: 1458 DGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPS-SPGYSPTS 1516
               MSP        +++P        Y  G  +SP    G +P  PG+SPS S   S  S
Sbjct: 1482 -SSMSP--------QMTPWNQVATPAY--GSGWSPGVGSGMTPGGPGFSPSGSSDASGLS 1530

Query: 1517 PGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY------------SPTSPAYSPTSPSYSPT 1564
            PGYSP       +     P+   Y PS  G             +P SP  +P SP+YSPT
Sbjct: 1531 PGYSPAWSPQPRSPSSPGPSMSPYIPSPTGVMSPSYSPSSPAYAPASPTMTPASPNYSPT 1590

Query: 1565 SPSYSPTSPS 1574
            SPSYSPTSP+
Sbjct: 1591 SPSYSPTSPN 1600



 Score = 48.5 bits (114), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 11/129 (8%)

Query: 1536 TSPTYSPSSPGYSPTSPAYSPTSPS-YSP-TSPSYSPTSPSYSPTSPS-YSPTSPSYSPT 1592
            ++ T S  SP  +P +   +P   S +SP      +P  P +SP+  S  S  SP YSP 
Sbjct: 1477 SAATPSSMSPQMTPWNQVATPAYGSGWSPGVGSGMTPGGPGFSPSGSSDASGLSPGYSPA 1536

Query: 1593 SPSYSPTSPSYSPTSPAYSPTSPAYSPTS---PAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
                  +  S  P+   Y P     SPT    P+YSP+SP+Y+P SP+ +P SP+YSPTS
Sbjct: 1537 WSPQPRSPSSPGPSMSPYIP-----SPTGVMSPSYSPSSPAYAPASPTMTPASPNYSPTS 1591

Query: 1650 PSYSPTSPS 1658
            PSYSPTSP+
Sbjct: 1592 PSYSPTSPN 1600



 Score = 46.2 bits (108), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 54/125 (43%), Gaps = 27/125 (21%)

Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSP-TSPAYSPTSPSYSPTSPS-YSPTSPSYSP 1647
            S  SP  +P +      +PAY      +SP      +P  P +SP+  S  S  SP YSP
Sbjct: 1482 SSMSPQMTPWN---QVATPAY---GSGWSPGVGSGMTPGGPGFSPSGSSDASGLSPGYSP 1535

Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGY-------------------SPTSPSYSPTSPTYS 1688
                   +  S  P+   Y P+  G                    +P SP+YSPTSP+YS
Sbjct: 1536 AWSPQPRSPSSPGPSMSPYIPSPTGVMSPSYSPSSPAYAPASPTMTPASPNYSPTSPSYS 1595

Query: 1689 PTSPS 1693
            PTSP+
Sbjct: 1596 PTSPN 1600



 Score = 42.7 bits (99), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 54/120 (45%), Gaps = 5/120 (4%)

Query: 1611 SPTSPAYSPTSPAYSPTSPS-YSPTSPS-YSPTSPSYSPTSPS-YSPTSPSYSPTSPAYS 1667
            S  SP  +P +   +P   S +SP   S  +P  P +SP+  S  S  SP YSP      
Sbjct: 1482 SSMSPQMTPWNQVATPAYGSGWSPGVGSGMTPGGPGFSPSGSSDASGLSPGYSPAWSPQP 1541

Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPN 1726
             +     P+   Y P SPT   +        A    S   +P+SP  SP SP YSPTSPN
Sbjct: 1542 RSPSSPGPSMSPYIP-SPTGVMSPSYSPSSPAYAPASPTMTPASPNYSPTSPSYSPTSPN 1600


>gi|58267574|ref|XP_570943.1| DNA-directed RNA polymerase ii largest subunit [Cryptococcus
            neoformans var. neoformans JEC21]
 gi|134112243|ref|XP_775097.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|50257749|gb|EAL20450.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57227177|gb|AAW43636.1| DNA-directed RNA polymerase ii largest subunit, putative
            [Cryptococcus neoformans var. neoformans JEC21]
          Length = 1786

 Score = 1697 bits (4396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 900/1810 (49%), Positives = 1174/1810 (64%), Gaps = 149/1810 (8%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT-ERGKPKPGGLSDPRLGT 59
            M   FPYS A V +V+ +QFGI+SP+EI+  SV +IE  E   E GK K GGL DP++GT
Sbjct: 1    MTVTFPYSSAPVKQVKEIQFGIMSPEEIKAFSVAKIESTEVLDENGKQKVGGLMDPKMGT 60

Query: 60   IDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH 119
            IDR  KC+TC   M+ECPGHFGH+ELA+P+FH GF+  V  I+  VC++C K+  D  D 
Sbjct: 61   IDRNFKCQTCLEGMSECPGHFGHIELARPVFHQGFIVKVKKILECVCYSCGKLKVDMRDP 120

Query: 120  KFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK-----------KNK 168
                A++    ++RLK I    K+K  CE  DE+D    +G+   +           K  
Sbjct: 121  MVANAVRRIKAQHRLKAIWALAKDKKHCEP-DELD-EKDNGDATFEDEYLQEQKAAMKGH 178

Query: 169  GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDED 228
            GGCG +QP    +G+K++  +K   K  D+     EP ER   ++   V  +LK+I+ ED
Sbjct: 179  GGCGHEQPVWRKKGLKLMGVWKPTDKGEDEA---AEPEER--NISPGEVYNILKKITPED 233

Query: 229  CQLLGLNPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLR 277
              ++GLN  YARPDWMIL VLP+PP  VRPS           DDLT++L+ II+ N  +R
Sbjct: 234  LHIMGLNADYARPDWMILTVLPVPPAAVRPSIAVDGGAMRSEDDLTYKLSQIIKFNGVVR 293

Query: 278  RQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIR 337
            R E  G P  +++E   LLQ+H+ TY DN++ G PR  Q+ GR IK+I +RLK KEGR+R
Sbjct: 294  RMEAEGVPPSVVNEQFDLLQYHVCTYMDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMR 353

Query: 338  GNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPH 397
            GNLMGKRVDFSARTVIT DP + +DQ+GVP SIA+ LTYPE VTPYNI  L+ LV  GP 
Sbjct: 354  GNLMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPA 413

Query: 398  PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 457
              PG   A+Y ++D G+R+DL+Y K      L+ G+ VERHL DGD+VLFNRQPSLHKMS
Sbjct: 414  TYPG---ARYYVKDTGERVDLKYRKSGEPISLQFGWIVERHLKDGDYVLFNRQPSLHKMS 470

Query: 458  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 517
            +M HR+K+M YSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ ++  VP+ IVSP
Sbjct: 471  MMSHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIVSP 530

Query: 518  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTG 577
            Q+N+PVMGIVQDTL G RK T RD F++     +IL+W  ++DG +P P I KP+P+WTG
Sbjct: 531  QANKPVMGIVQDTLCGIRKFTLRDNFLDWLQVQHILLWLPEWDGTIPPPAIFKPKPMWTG 590

Query: 578  KQVFNLIIPKQINLFRTAAWHADNDK-GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGS 636
            KQ+ ++ IPK IN+      + +N+K   +   D  V IE GEL+ GT+ K   G++   
Sbjct: 591  KQLLSMTIPKGINIT-----YKNNEKPSPIDVTDENVLIENGELVHGTIVKNMAGSANNG 645

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            L+HVI+ E+G  AAR F    Q +VNYWLL   FS+GIGDTI D  TM  I + + +AK 
Sbjct: 646  LVHVIFRELGHIAARDFFSAVQRVVNYWLLHFGFSVGIGDTIVDKATMAGITNRMVEAKE 705

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
             V+ LI++A+   ++P+PG T+ E+ E  +   LN ARD  G + Q +L   NN+K MV 
Sbjct: 706  AVQKLIQEAEANRMKPKPGMTIRETLEASIAAELNKARDWTGKTTQDNLKADNNVKQMVV 765

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
            +G+KGSFINISQM+  VGQQ VEGKRI FGF  R+LPHF++DDYGPESRGFVENSYLRGL
Sbjct: 766  SGAKGSFINISQMSGVVGQQFVEGKRISFGFRHRSLPHFSRDDYGPESRGFVENSYLRGL 825

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
            TPQEF+FHAMGGREGLIDTAVKT+ETGYIQRRLVKAMED+ V YDGTVRNS+ +V+QFLY
Sbjct: 826  TPQEFWFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDLKVAYDGTVRNSVNEVVQFLY 885

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDV 936
            GEDGMD   +E Q+LD +++    F++ ++ ++   +     +LQ  ID  ++   L+ +
Sbjct: 886  GEDGMDGAAMEKQSLDIIRLSDQAFERRYKIDVLGGSGFSKGILQAGID--QSSISLQKL 943

Query: 937  FDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVV 996
             D E  ++  DR  L +EI   G    PLPVN++R+I N+Q+ F +DPR PSD+ P+ ++
Sbjct: 944  LDEEFAQISEDRRILRSEIYPDGTPGHPLPVNIQRVIQNSQQIFHIDPRVPSDLDPVYLL 1003

Query: 997  EAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIG 1056
            E  D L +RL VV G+D LS  AQKNATL FN+LLRS  A++RVL+E+ L REAF+WVIG
Sbjct: 1004 EQRDALADRLLVVRGDDKLSRAAQKNATLVFNMLLRSHLATRRVLEEYHLNREAFDWVIG 1063

Query: 1057 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1116
            E+E  F +++V   EM+G +AAQSIGEPATQMTLNTFHYAGV++K+VT GVPRL+EIINV
Sbjct: 1064 EVEQIFNKAVVNAAEMVGTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPRLKEIINV 1123

Query: 1117 AKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDV 1176
            A  I+TP+L+V+L+P  + T+E A  +   L YT LR +T   E++YDP    T IEED 
Sbjct: 1124 AVNIRTPALNVYLEPEYSKTEEDAHQIMRKLTYTRLRDITATVEIFYDPKLDSTDIEEDK 1183

Query: 1177 EFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
            +FV +++ +PDEDI  E  SPWLLR+EL+R  +++    M+ + + I +    D+  I +
Sbjct: 1184 DFVDAFFAIPDEDIRLELHSPWLLRLELDRAKVLEGGYEMSQIVDAIAETVGKDVFVIHS 1243

Query: 1237 DDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMAL------------- 1283
            +DNA KL++RIR++ ++  +  L DE    D+FLK+IE  +L ++ L             
Sbjct: 1244 EDNAPKLVIRIRVVAEKEDEELLGDE----DMFLKRIEGTLLDQVELGGITGITRVFISE 1299

Query: 1284 ----------------------RGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
                                   G+NL  VM  + V+A RT SN+  E+ E LGIEA R 
Sbjct: 1300 GKQVVVSQNGEYDQEKEWFLETDGINLKEVMAVDGVNAFRTYSNNCYEVYETLGIEAARN 1359

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            AL  EL  VI   GSYVNYRHLA+LCD M  +G LM+ITRHGINR D G + R +FEETV
Sbjct: 1360 ALYKELNGVIEMGGSYVNYRHLALLCDLMCSKGALMSITRHGINRTDAGALSRAAFEETV 1419

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI-ELQLPSYMEGL 1440
            +ILL+AA   + D  +GV EN++LGQ+AP+GTG   + L+  MLK+ I + +LP      
Sbjct: 1420 EILLEAAAVGDVDDCKGVAENVLLGQMAPMGTGAFDVSLDMNMLKDVIVDHRLPVQNMMA 1479

Query: 1441 EFGMTPARSPVSGTPYHDGMMSPGY----------LFSPNLRLSPVTDAQF-------SP 1483
                       + TPY +  +SP +           FSP    +      F       SP
Sbjct: 1480 GGMAGGMTPGGAMTPYDN--LSPMWGGDKGALGHAAFSPIQSSANDEGGNFAYMGYGQSP 1537

Query: 1484 YVGGMA---FSPTSSPGYSPSSPGYSPSSPGYSPTSP----------------GYSPTSP 1524
              GGM+   +SP+S  GYSP+SP ++ +SP YSPTSP                GY  TSP
Sbjct: 1538 MHGGMSPAGYSPSSPAGYSPTSP-FAVTSPAYSPTSPFAGAAAGAASPWVGRGGYGATSP 1596

Query: 1525 GYSPTSPGYSPTSP---------------------TYSPSSPG-----YSPTSPAYSPTS 1558
             YSPTSP YSPTSP                      Y  +  G     YSPTSPAYSPTS
Sbjct: 1597 AYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPASPAYGGAGAGNRASPYSPTSPAYSPTS 1656

Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPAYSPTSPAY 1617
            P    TSP YSPTSP YSPTSP++SPTSPSYSPTSP+ +  TSP YSPTSP +SPTSP Y
Sbjct: 1657 PMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSPTY 1716

Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 1677
            SP SPAYSPTSP YSPTSP+YSPTSP+YSPTSP+Y   +P+            PG+  T 
Sbjct: 1717 SPASPAYSPTSPQYSPTSPAYSPTSPAYSPTSPAYGGAAPNGGTAQQQNGQARPGWGNTG 1776

Query: 1678 PSYSPTSPTY 1687
              Y  TSP++
Sbjct: 1777 -GYG-TSPSW 1784



 Score =  178 bits (452), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/271 (45%), Positives = 150/271 (55%), Gaps = 61/271 (22%)

Query: 1553 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPAYS 1611
            A+SP   S +    +++      SP     SP    YSP+SP+ YSPTSP ++ TSPAYS
Sbjct: 1513 AFSPIQSSANDEGGNFAYMGYGQSPMHGGMSPAG--YSPSSPAGYSPTSP-FAVTSPAYS 1569

Query: 1612 PTSPAYSPTSPAYSP--TSPSYSPTSPSYSPTSPSYSPTSPS------------------ 1651
            PTSP     + A SP      Y  TSP+YSPTSP YSPTSP                   
Sbjct: 1570 PTSPFAGAAAGAASPWVGRGGYGATSPAYSPTSPQYSPTSPQFSPTSPSFSPSSPTYSPA 1629

Query: 1652 ---------------YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
                           YSPTSP+YSPTSP    TSP YSPTSP YSPTSP +SPTSPSY+P
Sbjct: 1630 SPAYGGAGAGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTSPAFSPTSPSYSP 1689

Query: 1697 QSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNA 1756
             S        +  +SPR      YSPTSP +SPTS +YSP SP+YSP+SP YSP+SP   
Sbjct: 1690 TSPA-----PFQATSPR------YSPTSPQFSPTSPTYSPASPAYSPTSPQYSPTSPA-- 1736

Query: 1757 GGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
                  YSP+SP YSP+   SP+  G +P+ 
Sbjct: 1737 ------YSPTSPAYSPT---SPAYGGAAPNG 1758



 Score = 94.0 bits (232), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 107/236 (45%), Gaps = 81/236 (34%)

Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
            A+SP   S +    +++      SP     SP    YSP+SPA      GYSPTSP ++ 
Sbjct: 1513 AFSPIQSSANDEGGNFAYMGYGQSPMHGGMSPAG--YSPSSPA------GYSPTSP-FAV 1563

Query: 1683 TSPTYSPTSPSYNPQSAKYSPSLA---YSPSSPRLSPASPYSPTSPNYSPTS-------- 1731
            TSP YSPTSP     +   SP +    Y  +SP       YSPTSP YSPTS        
Sbjct: 1564 TSPAYSPTSPFAGAAAGAASPWVGRGGYGATSP------AYSPTSPQYSPTSPQFSPTSP 1617

Query: 1732 -------------------------SSYSPTSPSY------------------------- 1741
                                     S YSPTSP+Y                         
Sbjct: 1618 SFSPSSPTYSPASPAYGGAGAGNRASPYSPTSPAYSPTSPMGGITSPQYSPTSPRYSPTS 1677

Query: 1742 ---SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTP 1793
               SP+SP+YSP+SP      +P YSP+SPQ+SP++  YSP++P YSP+S  QY+P
Sbjct: 1678 PAFSPTSPSYSPTSPAPFQATSPRYSPTSPQFSPTSPTYSPASPAYSPTS-PQYSP 1732


>gi|324120586|dbj|BAJ78684.1| RNA polymerase II largest subunit [Papilio polytes]
          Length = 1518

 Score = 1697 bits (4395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 840/1483 (56%), Positives = 1073/1483 (72%), Gaps = 79/1483 (5%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V+ VQFGILSPDEIR+MSV +  I   ET E G+PK GGL DPR G IDR  +
Sbjct: 2    SKAPLRQVKRVQFGILSPDEIRRMSVTEGGIRFPETMEGGRPKLGGLMDPRQGVIDRNAR 61

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+ +
Sbjct: 62   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPTNPKIKEVV 121

Query: 126  KIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK-KNKGGCGAQQPKLTIEG 182
                  P+ RL  + D CK K  CEGG+++D+ G++GEE  +    GGCG  QP +  +G
Sbjct: 122  MKSKGQPRKRLTYVYDLCKGKNICEGGEDMDI-GKEGEEGKRGSGHGGCGHYQPSIRRQG 180

Query: 183  MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
            + + AE+K     N+D +      E+K  +TAERV  +LK I+DE+  +LG++PK+ARPD
Sbjct: 181  LDLTAEWK---HANEDTQ------EKKIIITAERVWEILKHITDEESFILGMDPKFARPD 231

Query: 243  WMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
            WMI+ VLP+PP  VRP+          DDLTH+LA II+ N  L R E+ GA AH+++E 
Sbjct: 232  WMIVTVLPVPPLSVRPAVVMFGAAKNQDDLTHKLADIIKANNELMRNEQLGAAAHVLAEN 291

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
             +LLQFH+AT+ DN++PG P+A Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTV
Sbjct: 292  IRLLQFHVATFVDNDMPGMPKAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTV 351

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
            ITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD+
Sbjct: 352  ITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNAQYPG---AKYIVRDN 408

Query: 413  GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
            G+R+DLR+  K SD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STFR
Sbjct: 409  GERIDLRFHPKPSDLHLQYGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFR 468

Query: 473  LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
            +NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL 
Sbjct: 469  MNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLT 528

Query: 533  GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
              RK+TKRD F+ K+  MN+LM+   +DGK+PQP ILKP+PLWTGKQ+F LIIP  +N+ 
Sbjct: 529  AVRKMTKRDVFLTKEQVMNLLMFLPTWDGKIPQPCILKPQPLWTGKQIFTLIIPGNVNMI 588

Query: 593  RTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            RT + H D  D G    ++ GDT V +E GELL G LCKK+LG S GSL+H+   E+G +
Sbjct: 589  RTHSTHPDEEDDGPYKWISPGDTKVVVEHGELLMGILCKKSLGASAGSLLHICMLELGHE 648

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
             A +F G+ Q ++N WLL    SIGIGDTIAD +T + I   I KAK++V  +I++A + 
Sbjct: 649  TAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYQEIQRAIVKAKDDVIEVIQKAHNM 708

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV AGSKGS INISQ
Sbjct: 709  ELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQ 768

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            + ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGG
Sbjct: 769  VIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGG 828

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E 
Sbjct: 829  REGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLAGETVEF 888

Query: 889  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
            Q L ++K+    F+K F+F+   E +      ++ I +L     +    ++E ++L  DR
Sbjct: 889  QNLPTVKLSNKAFEKKFKFDPSNERYLKRIFNEDIIKELTESGYVISDLESEWEQLSKDR 948

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
             ++  +I  SG+S   LP N KR+IWN QK F ++ R P+D+ P++V++ V  L ++  +
Sbjct: 949  -EILRQIFPSGESKVVLPCNFKRMIWNVQKIFHINKRMPTDLSPIKVIQGVKDLLKKCVI 1007

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            V GED LS +A +NATL F  L+RST  +K V +E+RL+ EAFEW+IGEIE+RF Q+ V 
Sbjct: 1008 VAGEDRLSKQANENATLLFQCLVRSTLCTKFVSEEYRLSSEAFEWLIGEIETRFQQAQVN 1067

Query: 1069 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1128
            PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VF
Sbjct: 1068 PGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVF 1127

Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1188
            L  G     E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD 
Sbjct: 1128 LTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDF 1187

Query: 1189 DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
            D  P KISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIR
Sbjct: 1188 D--PTKISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIR 1245

Query: 1249 IMNDEAPKGELNDESA----EDDVFLKKIESNMLTEMALRGV------------------ 1286
            IMN+E  K + NDE      EDD+FL+ IE+NML++M L+G+                  
Sbjct: 1246 IMNNEESKFQDNDEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTEAKKR 1305

Query: 1287 ----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                                  +L+ V+   DVD  RT SN + EI +VLGIEAVR+++ 
Sbjct: 1306 IIITEQGEFKAIAEWLLETDGTSLMKVLSERDVDPIRTFSNDICEIFQVLGIEAVRKSVE 1365

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
             E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L
Sbjct: 1366 KEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVL 1425

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKN 1427
            LDAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K+
Sbjct: 1426 LDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKCKH 1468


>gi|324120566|dbj|BAJ78674.1| RNA polymerase II largest subunit [Uroleucon nigrotuberculatum]
          Length = 1862

 Score = 1697 bits (4395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 891/1655 (53%), Positives = 1139/1655 (68%), Gaps = 110/1655 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILS DE R+MSV +  I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPIRSVKRVQFGILSADECRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVIDRFSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM EC GHFGH+ELAKP+FH+GF+   + I+R VCF CSK+L      K K+  
Sbjct: 66   CQTCAGNMTECCGHFGHIELAKPVFHVGFVTKAIKILRCVCFYCSKLLVSPTHPKVKEIV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP----LKKNKGGCGAQQPKLT 179
            +K +   + RL  I D CK K  CEGGDE+D+   +  +P     K+  GGCG  QP + 
Sbjct: 126  MKSKGQQRKRLAFIYDLCKGKNICEGGDELDINKDNVNDPNMPPKKQGHGGCGRYQPTIR 185

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
              G+ + AE+K     N+D +      E+K  LTAERV  +LK I+DE+  ++G++PK+A
Sbjct: 186  RVGLDLTAEWK---HVNEDSQ------EKKIPLTAERVHEILKHITDEEVVIMGMDPKFA 236

Query: 240  RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RPDWM+L VLP+PP PVRP+          DDLTH+L+ II+ N  L R E++GA  HII
Sbjct: 237  RPDWMVLTVLPVPPLPVRPAIVMFGSMRNQDDLTHKLSDIIKCNNELIRNEQSGAATHII 296

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            +E  ++LQ+H+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSA
Sbjct: 297  AENIRMLQYHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 356

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVITPDP + ID++GVP +IA N+T+PE VTP+NI+ + ELV  G    PG   AKYII
Sbjct: 357  RTVITPDPNLRIDEVGVPRTIAQNMTFPEIVTPFNIDHMLELVRRGNSQYPG---AKYII 413

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+S
Sbjct: 414  RDNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQPTLHKMSMMGHRVRVLPWS 473

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQD
Sbjct: 474  TFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQD 533

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK+TKRD F+EK+  MN+LM    +DGK+P P ILKP+PLWTGKQ+F+LIIP  +
Sbjct: 534  TLTAIRKMTKRDVFLEKEQMMNLLMHLPIWDGKMPTPCILKPKPLWTGKQLFSLIIPGNV 593

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            NL RT + H D  D G    ++ GDT V +E GEL+ G LCK TLGTS GSL+H+ + E+
Sbjct: 594  NLIRTHSTHPDEEDNGPYKWISPGDTKVMVEHGELVMGILCKSTLGTSAGSLLHICFLEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A
Sbjct: 654  GHEVCGRFYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +G+KGS IN
Sbjct: 714  HNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGAKGSNIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHA
Sbjct: 774  ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    
Sbjct: 834  MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLSGEA 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E Q++ +++    +F+  F+F++  E        ++ + DL    +     + E ++L 
Sbjct: 894  VEFQSIATIEPSHKKFEAEFKFDISNERHMRKIFNEDVLKDLTGSNDSVTELEREWEQLT 953

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L  EI  SG+S   LP NLKR+IWN QK F ++ R  +D++P++V+  V +L ++
Sbjct: 954  NDRDTL-REIFPSGESKVVLPCNLKRMIWNVQKIFHINKRGQTDLNPVKVINGVKELLDK 1012

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
              +V GED LS +A KNATL F  L+RST  +K V +  RL+ EAFEW+IGEIE+RF Q+
Sbjct: 1013 CVIVAGEDELSQKANKNATLLFQCLVRSTLCTKLVSERFRLSSEAFEWLIGEIENRFKQA 1072

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
               PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL
Sbjct: 1073 QAQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSL 1132

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEM
Sbjct: 1133 TVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIREDQEFVNVYYEM 1192

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PD D  P +ISPWLLRIEL+R+ M DKKL+M A++EKIN  F DDL CIFNDDNADKLIL
Sbjct: 1193 PDFD--PSRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNADKLIL 1250

Query: 1246 RIRIMNDEAPKGELND-----ESAEDDVFLKKIESNMLTEMALRGV-------------- 1286
            RIRIMN E  K    D     +  EDD+FL+ IE+NML++M L+G+              
Sbjct: 1251 RIRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTD 1310

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                      +L+ V+   DVD  RT SN + EI  VLGIEAVR
Sbjct: 1311 AKKRIIITDTGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVR 1370

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
            +++  E+  V++F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEET
Sbjct: 1371 KSVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1430

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS----- 1435
            VD+LLDAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K+ IE+ + +     
Sbjct: 1431 VDVLLDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDSEKAKDGIEIPMDNGYMGM 1490

Query: 1436 -YMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS 1494
                      TP+ SP + TP+ D   +P Y  S     S   +A  +P  GG  FSP  
Sbjct: 1491 GAGGMFMAAGTPSMSP-AMTPW-DQTSTPVYQNS----WSSSLEAGMTP--GGPGFSPAG 1542

Query: 1495 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGY--SPTSPGYSPTSPTYS-PSSPGYSPTS 1551
            S   S +SP +  S  G +P SPG    SPG   SP  P  +  SP Y+ PSSP +   S
Sbjct: 1543 SSEASGTSPFWMTS--GGTPGSPG----SPGMATSPYVPSPNSMSPNYNYPSSPQFGSMS 1596

Query: 1552 PAYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYS 1583
            P+ +PT  +YSPTSP YS T   +P YS  SP+Y+
Sbjct: 1597 PSMTPT--NYSPTSPQYSATQQNTPKYSSMSPNYN 1629



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 71/133 (53%), Gaps = 13/133 (9%)

Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPAY--SPTS 1614
            +PS SP    +  TS      S S S      +P  P +SP   S  S TSP +  S  +
Sbjct: 1501 TPSMSPAMTPWDQTSTPVYQNSWS-SSLEAGMTPGGPGFSPAGSSEASGTSPFWMTSGGT 1559

Query: 1615 PAYSPTSP--AYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPAYSPT-- 1669
            P  SP SP  A SP  PS +  SP+Y+ P+SP +   SPS +PT  +YSPTSP YS T  
Sbjct: 1560 PG-SPGSPGMATSPYVPSPNSMSPNYNYPSSPQFGSMSPSMTPT--NYSPTSPQYSATQQ 1616

Query: 1670 -SPGYSPTSPSYS 1681
             +P YS  SP+Y+
Sbjct: 1617 NTPKYSSMSPNYN 1629


>gi|328722767|ref|XP_001943949.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Acyrthosiphon pisum]
          Length = 1958

 Score = 1697 bits (4394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 892/1655 (53%), Positives = 1136/1655 (68%), Gaps = 110/1655 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILS DE R+MSV +  I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPIRTVKRVQFGILSADECRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVIDRFSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM EC GHFGH+ELAKP+FHIGF+   + I+R VCF CSK+L      K K+  
Sbjct: 66   CQTCAGNMTECCGHFGHIELAKPVFHIGFLTKAIKILRCVCFYCSKLLVSPTHPKVKEIV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEE----PLKKNKGGCGAQQPKLT 179
            +K +   + RL  + D CK K  CEGGDE+D+   +  +    P K+  GGCG  QP + 
Sbjct: 126  MKSKGQQRKRLAFVYDLCKGKNICEGGDELDINKDNINDSNMPPKKQGHGGCGRYQPTIR 185

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
              G+ + AE+K     N+D +      E+K  LTAERV  +LK I+DE+  ++G++PK+A
Sbjct: 186  RVGLDLTAEWK---HVNEDSQ------EKKIPLTAERVYEILKHITDEEVVIMGMDPKFA 236

Query: 240  RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RPDWM+L VLP+PP PVRP+          DDLTH+L+ II+ N  L R E++GA  HII
Sbjct: 237  RPDWMVLTVLPVPPLPVRPAIVMFGSMRNQDDLTHKLSDIIKCNNELIRNEQSGAATHII 296

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            +E  ++LQ+H+AT  DN+ PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSA
Sbjct: 297  AENIRMLQYHVATLVDNDSPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 356

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVITPDP + ID++GVP +IA N+T+PE VTP+NI+++ ELV  G    PG   AKYII
Sbjct: 357  RTVITPDPNLRIDEVGVPRTIAQNMTFPEIVTPFNIDQMLELVRRGNSQYPG---AKYII 413

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+S
Sbjct: 414  RDNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQPTLHKMSMMGHRVRVLPWS 473

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQD
Sbjct: 474  TFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQD 533

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK+TKRD FIEK+  MN+LM    +DGK+P P ILKP+P+WTGKQVF+LIIP  +
Sbjct: 534  TLTAIRKMTKRDVFIEKEQMMNLLMHLPIWDGKMPTPCILKPKPMWTGKQVFSLIIPGNV 593

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            N+ RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E+
Sbjct: 594  NMIRTHSTHPDEEDNGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A
Sbjct: 654  GHEVCGRFYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYLEIQRAIKKAKEDVIEVIQKA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E N+LKAMV +GSKGS IN
Sbjct: 714  HNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNSLKAMVVSGSKGSNIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHA
Sbjct: 774  ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    
Sbjct: 834  MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGEA 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E Q++ +++    +F+  F+F++  E        ++ + D+    +     + E ++L 
Sbjct: 894  VEFQSIATIEPSHKKFENEFKFDVSNERHMRKIFTEDVLKDMMGSNDTVAELEKEWEQLT 953

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L  EI  SG+S   LP NLKR+IWN QK F ++ R P+D++P++VV  V KL ++
Sbjct: 954  NDRDTL-REIFPSGESKVVLPCNLKRMIWNVQKIFHINKRGPTDLNPIKVVNGVKKLLDK 1012

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
              +V GED LS +A KNATL F  L+RST  +K V +  RL+ EAFEW++GEIE+RF Q+
Sbjct: 1013 CVIVAGEDELSKKANKNATLLFQCLVRSTLCTKLVSENFRLSSEAFEWLVGEIENRFKQA 1072

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
               PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL
Sbjct: 1073 QAQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSL 1132

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEM
Sbjct: 1133 TVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIREDQEFVNVYYEM 1192

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PD D  P +ISPWLLRIEL+R+ M DKKL+M A++EKIN  F DDL CIFNDDNADKLIL
Sbjct: 1193 PDFD--PTRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNADKLIL 1250

Query: 1246 RIRIMNDEAPKGELND-----ESAEDDVFLKKIESNMLTEMALRGVN------------- 1287
            RIRIMN E  K    D     +  EDD+FL+ IE+NML++M L+G++             
Sbjct: 1251 RIRIMNGEDGKMNGGDDEDTVDKMEDDMFLRCIEANMLSDMTLQGIDSIGKVYMHLPQTD 1310

Query: 1288 ---------------------------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                       L+ V+   DVD  RT SN + EI  VLGIEAVR
Sbjct: 1311 SKKRIIITDTGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVR 1370

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
            +++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEET
Sbjct: 1371 KSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1430

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS----- 1435
            VD+LLDAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K+ IE+ + +     
Sbjct: 1431 VDVLLDAASHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDAEKAKDGIEIPMDNGYMGM 1490

Query: 1436 -YMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS 1494
                      TP+ SP   TP+ D   +P Y        S   +   +P  GG  FSP  
Sbjct: 1491 GGGGMFMAAGTPSMSPAM-TPW-DQTSTPMY----QNNWSSSLETGMTP--GGPGFSPAG 1542

Query: 1495 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGY--SPTSPGYSPTSPTYS-PSSPGYSPTS 1551
            S   S +SP +   S G +P SPG    SPG   SP  P  S  SP Y+ PSSP +   S
Sbjct: 1543 SSEASGTSPFW--MSSGGTPGSPG----SPGMATSPYVPSPSSMSPNYNYPSSPQFGSLS 1596

Query: 1552 PAYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYS 1583
            P+ +PT  +YSPTSP YS T   +P YS  SP+Y+
Sbjct: 1597 PSMTPT--NYSPTSPQYSATQQNTPKYSSMSPNYN 1629



 Score = 73.6 bits (179), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 65/101 (64%), Gaps = 5/101 (4%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+ +SPSY+P++ S   ++  YSPTSP+ +  SP YSPTSP YSP++ SYSP+S  ++P 
Sbjct: 1740 YAASSPSYTPSATS-GTSNYKYSPTSPSLA-VSPTYSPTSPMYSPSNASYSPSSLQHTPN 1797

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSP 1689
            +     T  + S +  +   +   +S  SP YSPTSPTYSP
Sbjct: 1798 A---GGTQYNQSYSPSSPVYSPTNFSMASPRYSPTSPTYSP 1835



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 11/104 (10%)

Query: 1554 YSPTSPSYSPTSPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
            Y+ +SPSY+P++ S +        YSPTSPS +  SP+YSPTSP YSP++ SYSP+S  +
Sbjct: 1740 YAASSPSYTPSATSGTSNY----KYSPTSPSLA-VSPTYSPTSPMYSPSNASYSPSSLQH 1794

Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1654
            +P +     T    S +  S   +  ++S  SP YSPTSP+YSP
Sbjct: 1795 TPNAGG---TQYNQSYSPSSPVYSPTNFSMASPRYSPTSPTYSP 1835



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/103 (42%), Positives = 63/103 (61%), Gaps = 9/103 (8%)

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1590
            Y+ +SP+Y+PS+     ++  YSPTSPS   SPT    SPTSP YSP++ SYSP+S  ++
Sbjct: 1740 YAASSPSYTPSATS-GTSNYKYSPTSPSLAVSPTY---SPTSPMYSPSNASYSPSSLQHT 1795

Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP 1633
            P +     T  + S +  +   +   +S  SP YSPTSP+YSP
Sbjct: 1796 PNA---GGTQYNQSYSPSSPVYSPTNFSMASPRYSPTSPTYSP 1835



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 9/103 (8%)

Query: 1498 YSPSSPGYSPSSPGYSPTSPGYSPTSP--GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYS 1555
            Y+ SSP Y+PS+     ++  YSPTSP    SPT    SPTSP YSPS+  YSP+S  ++
Sbjct: 1740 YAASSPSYTPSATS-GTSNYKYSPTSPSLAVSPTY---SPTSPMYSPSNASYSPSSLQHT 1795

Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1598
            P +     T  + S +  S   +  ++S  SP YSPTSP+YSP
Sbjct: 1796 PNA---GGTQYNQSYSPSSPVYSPTNFSMASPRYSPTSPTYSP 1835



 Score = 61.2 bits (147), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 65/106 (61%), Gaps = 17/106 (16%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPAYSPTSPGYSPTSPSYSPTSPTYS 1688
            Y+ +SPSY+P++ S   ++  YSPTSPS   SPT    SPTSP YSP++ SYSP+S  ++
Sbjct: 1740 YAASSPSYTPSATS-GTSNYKYSPTSPSLAVSPTY---SPTSPMYSPSNASYSPSSLQHT 1795

Query: 1689 PTS--PSYNPQSAKYSPSLA---YSPSSPRLSPASPYSPTSPNYSP 1729
            P +    YN   +  SP  +   +S +SPR      YSPTSP YSP
Sbjct: 1796 PNAGGTQYNQSYSPSSPVYSPTNFSMASPR------YSPTSPTYSP 1835


>gi|324120506|dbj|BAJ78644.1| RNA polymerase II largest subunit [Metriocampa sp. 44]
          Length = 1738

 Score = 1696 bits (4391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 857/1572 (54%), Positives = 1106/1572 (70%), Gaps = 106/1572 (6%)

Query: 23   LSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHF 80
            LSPDEIR+MSV +  I + ET E G+PK GGL DPR G +DR  +C+TC  NM ECPGHF
Sbjct: 1    LSPDEIRRMSVTEGGIRYAETQEGGRPKLGGLMDPRQGVVDRLSRCQTCAGNMTECPGHF 60

Query: 81   GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NPKNRLKKIL 138
            GH++LAKP+FH GF+   + I+R VCF CSK+L +    + K  L+     P+ RL  + 
Sbjct: 61   GHIDLAKPVFHSGFLVKSIKILRCVCFYCSKLLVNPTTPRIKDILQKSKGQPRKRLAAVY 120

Query: 139  DACKNKTKCEGGDEIDVPGQD----GEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRK 194
            D CK KT CEGGDEID+  +D    G++P K+  GGCG  QPK+   G+ + AE+K    
Sbjct: 121  DLCKGKTICEGGDEIDLQREDDPNAGQQPKKQGHGGCGRYQPKIKRAGLDLTAEWK---H 177

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
             N+D +      E+K  LTAERV  + + ISDE+C ++G++PKYARPDWMI+ VLP+PP 
Sbjct: 178  VNEDAQ------EKKIPLTAERVWEIFRHISDEECYIMGMDPKYARPDWMIVTVLPVPPL 231

Query: 255  PVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
             VRP+          DDLTH+L+ II+ N  L+R E++GA  HI+ E  ++LQFH+AT  
Sbjct: 232  AVRPAVVMFGSARNQDDLTHKLSDIIKANNELQRNEQSGAATHILLENVKMLQFHVATLV 291

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++PG P+A Q+SGRP+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + IDQ+
Sbjct: 292  DNDMPGLPKAMQKSGRPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQV 351

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA NLT+PE VTP+NI++++ELV  G    PG   AKYIIRD+G+R+DLR+  KS
Sbjct: 352  GVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPG---AKYIIRDNGERIDLRFHPKS 408

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
            SD HL+ GYKVERH+ DGD ++FNRQP+LHKMS+MGHR+K++P+STFR+NLSVTSPYNAD
Sbjct: 409  SDLHLQCGYKVERHIRDGDLIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNAD 468

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMNMH+PQS ETRAEV  + +  + I++PQ+N+PVMGIVQDTL   RK+TKRD F+
Sbjct: 469  FDGDEMNMHIPQSMETRAEVENIHITTRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFL 528

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DK 603
            EK+  +NILM    +DGK+PQP ILKP+PLWTGKQVF+LIIP  +N+ RT + H D  D 
Sbjct: 529  EKEQMLNILMHLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNMIRTHSAHPDEEDD 588

Query: 604  G---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
            G    ++ GDT V +E G+L+ G LCKKTLGTS GSL+H+ + E+G +   +F G+ Q +
Sbjct: 589  GPYKWISPGDTKVMVEHGDLVMGILCKKTLGTSAGSLLHICFVELGHEVCGQFYGNIQTV 648

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            +N WLL    SIGIGD+IAD +T   I  TI KAK +V  +I++A +  LEP PG T+ +
Sbjct: 649  INNWLLLEGHSIGIGDSIADPQTYLEIQKTIKKAKEDVIEVIQKAHNMELEPTPGNTLRQ 708

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +G+KGS INISQ+ ACVGQQNVEG
Sbjct: 709  TFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGAKGSNINISQVIACVGQQNVEG 768

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+
Sbjct: 769  KRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTA 828

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRL+KAME +MV YDGT+RNS+G +IQ  YGEDG+    +E Q+L ++K+    
Sbjct: 829  ETGYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGEHVEFQSLPTVKLSNRA 888

Query: 901  FDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGD 960
            F+K F+F+   E +      ++ + ++    ++    + E  +L +DR  L  +I  SG+
Sbjct: 889  FEKKFKFDPSNERYLRRVFTEDIMREVMGSGDVISGLEKEWAQLTSDRESL-RQIFPSGE 947

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
            +   LP NL R+IWN QK F ++ R P+D+ P+ V++ V +L ++  +V GED +S  A 
Sbjct: 948  NKVVLPCNLHRMIWNVQKIFHINRRAPTDLSPLRVIQGVQELIKKCVIVQGEDRMSKLAN 1007

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            +NATL F  L+RST  +K+V +E RL+ EAFEW+IGEIE+RF Q+ V PGEM+G +AAQS
Sbjct: 1008 ENATLLFQCLVRSTLCTKQVAEEFRLSSEAFEWLIGEIETRFQQAQVQPGEMVGALAAQS 1067

Query: 1081 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERA 1140
            +GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VFL        E+A
Sbjct: 1068 LGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGNAARDAEKA 1127

Query: 1141 KNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLL 1200
            KNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD D  P +ISPWLL
Sbjct: 1128 KNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFD--PTRISPWLL 1185

Query: 1201 RIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELN 1260
            RIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIMN +  K +  
Sbjct: 1186 RIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKFQEE 1245

Query: 1261 DESA---EDDVFLKKIESNMLTEMALRGV------------------------------- 1286
            +E     EDD+FL+ IE+NML++M L+G+                               
Sbjct: 1246 EEQVDKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTDSKKRIVVTETGDFKAIA 1305

Query: 1287 ---------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSY 1337
                     +L+ V+   DVD  RT SN + EI  VLGIEAVR+++  E+ +V++F G Y
Sbjct: 1306 EWLLETDGTSLMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSVEKEMNMVLNFYGLY 1365

Query: 1338 VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLR 1397
            VNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA  AE D +R
Sbjct: 1366 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAAAHAEVDPMR 1425

Query: 1398 GVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM-----EGLEFGMTPARSPVS 1452
            GV+ENI++GQL  +GTG   L L+ E  K  IE+ +   +      G+ FG   A +P S
Sbjct: 1426 GVSENIIMGQLPRLGTGCFDLILDAEKCKCGIEIPMNIGVGMLGGHGVFFG--SAGTPSS 1483

Query: 1453 GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSP-YVGGMAFSPTSSPGYSPSSPGYSPS-SP 1510
            G       MSP        +++P   AQ +P Y G          G +P  PG+SPS + 
Sbjct: 1484 G-------MSP--------QMTPW--AQATPMYSGSGLSPGGLGSGMTPGGPGFSPSGAS 1526

Query: 1511 GYSPTSPGYSPT 1522
              S  SPGYSP 
Sbjct: 1527 DASGLSPGYSPA 1538


>gi|145230824|ref|XP_001389676.1| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus niger CBS
            513.88]
 gi|134055799|emb|CAK37321.1| unnamed protein product [Aspergillus niger]
          Length = 1747

 Score = 1695 bits (4389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 910/1758 (51%), Positives = 1193/1758 (67%), Gaps = 109/1758 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            FPYS A +  ++ +QFG+ SP+EI++MSVV +E+ ET   +R +P+  GL+DPRLGTIDR
Sbjct: 6    FPYSKAPLRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDDQRQRPRTKGLNDPRLGTIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            +  CETC     ECPGHFGH+ELA P++HIGF+  +  ++ +VC NC KI A+  D KF 
Sbjct: 66   QWNCETCEEGQKECPGHFGHIELATPVYHIGFLTKIKKLLETVCHNCGKIKANTSDPKFL 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK--KNKGGCGAQQPKLTI 180
            +AL++R+PK R   I    K+   CE     D      +E  K  +  GGCG  QP++  
Sbjct: 126  EALRMRDPKRRFDHIWRLSKDVLICEADPPPDDDEPFSKENAKPVRMHGGCGNAQPQIRK 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EG+ ++  +K  +  ++   Q PE    K+ +T +  L V + IS ED +++GL+  YAR
Sbjct: 186  EGITLVGTWKPNKMMDEMDMQQPE----KKVITPQVALNVFRNISYEDVRIMGLSNDYAR 241

Query: 241  PDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
            P+WMI+ VLP+PPPPV             R  DDLT++LA I+R N+N++R E+ GAP H
Sbjct: 242  PEWMIITVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIVRANQNVQRCEQEGAPEH 301

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            ++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I SRLK KEGR+R NLMGKRVDF
Sbjct: 302  VVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDF 361

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVIT DP ++++++GVP SIA  LTYPE VTPYNIE+L+ LV  GP+  PG   A+Y
Sbjct: 362  SARTVITGDPNLSLEEVGVPKSIARTLTYPEVVTPYNIEKLQTLVSNGPNEHPG---ARY 418

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            I+RD+G+R+DLR+ K++    L  G+KVERH+ DGD +LFNRQPSLHK S+MGHR+++MP
Sbjct: 419  IVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNRQPSLHKESMMGHRVRVMP 478

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            YSTFRLNLSVT+PYNADFDGDEMN+HVPQS E+RAE+ +L +VP  IVSPQ N P+MGIV
Sbjct: 479  YSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSPQRNGPLMGIV 538

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL G  KI +RD F+ KD  MNI+MW  D+DG +P P ILKPRP WTGKQ+ ++ +P 
Sbjct: 539  QDTLCGIYKICRRDVFLTKDQVMNIMMWVPDWDGVIPPPAILKPRPRWTGKQMISMALPS 598

Query: 588  QINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             +NL R    ++   +      D  + I  G+L+ G   KKT+G S G +IH I+ E G 
Sbjct: 599  GLNLLRVDKDNSPLSEKFSPLADGGLLIHNGQLMYGMFSKKTVGASGGGVIHTIFNEYGH 658

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
              A  F    Q +VNYWLL N FSIGIGDTI D  T++ I + +   K  V+++   A D
Sbjct: 659  GTAVAFFNGAQRIVNYWLLHNGFSIGIGDTIPDELTIQRIENCVRNRKKEVESITASATD 718

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
             +LEP PG  + E+FE+KV++ LN ARDEAGS  +KSL + NN   M  +GSKGS INIS
Sbjct: 719  NTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINIS 778

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            QMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM 
Sbjct: 779  QMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMA 838

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD+IQF+YGEDG+D   IE
Sbjct: 839  GREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAHIE 898

Query: 888  SQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +Q +D +K    +F + FR + MD E    P  +  E  +++    E++   D E ++L 
Sbjct: 899  NQRVDIIKCSDDKFRERFRVDLMDPERTLGPEVL--EQANEIAGDVEVQRHLDEEWEELL 956

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L + +A   +    LP+N++R++  A+ TF++     SD+HP EV+  V  L +R
Sbjct: 957  KDRAFLRS-VAKEDEEMMQLPINVQRILETARTTFRIREGTISDLHPAEVIPQVRSLLDR 1015

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
            L VV G D +S EAQ+NATL F   LRS  A +R++ E+ + + AF+ VIG IESRF ++
Sbjct: 1016 LLVVRGNDIISREAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAIESRFAKA 1075

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
               PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA  IKTPS+
Sbjct: 1076 GANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSM 1135

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +V+ +   +  KE AK ++ A+E+T+LRSVTEATE++YDPD   T+IE D + V+SY+ +
Sbjct: 1136 TVYQEAARSFDKEGAKQLRSAVEHTSLRSVTEATEIYYDPDIQTTVIENDRDMVESYFII 1195

Query: 1186 PDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
            P ED+  +  + S WLLRI L+R  ++DK L++  VA +I   +  D+  IF+D+NAD+ 
Sbjct: 1196 P-EDVTDDASRQSKWLLRIILSRPKLLDKGLTVQDVASRIKAAYPKDIAVIFSDNNADEQ 1254

Query: 1244 ILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV----------------- 1286
            ++RIR +  +  K +  D+  E DV LKK+E ++L  + LRGV                 
Sbjct: 1255 VIRIRQI--QDYKEDEEDDDIEYDVTLKKLEQHLLDTLTLRGVPGVERAFINEKSKVRVL 1312

Query: 1287 ---NLLAV----MCHE-----------------DVDARRTTSNHLIEIIEVLGIEAVRRA 1322
               +L A     +C E                  VDA RT SN  IE+ EV GIEA R A
Sbjct: 1313 EDGSLFASKTDPLCKEWVLETSGSSLGEVLAIPGVDATRTYSNQFIEVFEVFGIEAARTA 1372

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            +L EL  V++FDGSYVN+RHLA+L D MT RG+L  +TRHGINR D G +MRCSFEETV+
Sbjct: 1373 VLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVE 1432

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEF 1442
            ILL+AA F E D  RGV+EN++LGQ+AP GTG+  +YL+  ++   +       + G   
Sbjct: 1433 ILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDIYLDQNLMNTVVSNNARFGVMGAIG 1492

Query: 1443 GMTPARSPVSGTPYHDG--MMSPGYLFSPN--LRLSPVTDA---------QFSPYVG-GM 1488
                  S  + T Y  G  M    Y+ +P+     SP+  A         ++ P  G G 
Sbjct: 1493 AKDAIISDGAATQYDTGSPMQESAYIGTPDPESNFSPIRQAGAETPGGFTEYQPTGGFGG 1552

Query: 1489 AFSP--TSSPGYSPSSP-GYSPSSPG------YSPTSPGYSPTSPGYSPTSPGYSPTSPT 1539
             FSP  TS  GYSPSSP   +P+SPG      YSPTSPG + TSP +  TSPG+SP SP+
Sbjct: 1553 GFSPAATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMAITSPRFMSTSPGFSPASPS 1612

Query: 1540 YSPSSPGYSPTSPAY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1596
            ++P+SP YSPTSPAY   SPTSPSYSPTSP +SPTSP+YSPTSPS+SP SP++SPTSPSY
Sbjct: 1613 FAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSY 1672

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP-SYSPTSPSY--SPTSPSYS 1653
            SPTSP+        SPT    SPTSP Y+PTSP +SPTSP +YSPTSP++  SPTSP   
Sbjct: 1673 SPTSPAVGGVGRHLSPT----SPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPG-G 1727

Query: 1654 PTSPSYSPTSPAYSPTSP 1671
            PTSP YSPTSPA+SPTSP
Sbjct: 1728 PTSPGYSPTSPAFSPTSP 1745



 Score =  157 bits (397), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/219 (49%), Positives = 133/219 (60%), Gaps = 46/219 (21%)

Query: 1603 YSPTSPAYSPTSPAYSPTSPA-YSPTSP-SYSPTSPS-------------YSPTSPSYSP 1647
            Y PT       SPA   TSPA YSP+SP S +PTSP               + TSP +  
Sbjct: 1544 YQPTGGFGGGFSPA--ATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMAITSPRFMS 1601

Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGY---SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            TSP +SP SPS++PTSPAYSPTSP Y   SPTSPSYSPTSP +SPTSP+Y          
Sbjct: 1602 TSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNY---------- 1651

Query: 1705 LAYSPSSPRLSPASP-YSPTSPNYSPTS----------SSYSPTSPSYSPSSPTYSPSSP 1753
               SP+SP  SPASP +SPTSP+YSPTS          S  SPTSP Y+P+SP +SP+SP
Sbjct: 1652 ---SPTSPSFSPASPAFSPTSPSYSPTSPAVGGVGRHLSPTSPTSPKYTPTSPGWSPTSP 1708

Query: 1754 YNAGGGNPDY--SPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
                  +P++  SP+SP    S GYSP++P +SP+S  Q
Sbjct: 1709 QTYSPTSPNFAGSPTSPGGPTSPGYSPTSPAFSPTSPRQ 1747



 Score =  137 bits (346), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 121/187 (64%), Gaps = 20/187 (10%)

Query: 1610 YSPTSPAYSPTSPAYSPTSPS-YSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
            Y PT       SPA   TSP+ YSP+SP S +PTSP YSPTS     +    + TSP + 
Sbjct: 1544 YQPTGGFGGGFSPA--ATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSP-GMAITSPRFM 1600

Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPN 1726
             TSPG+SP SPS++PTSP YSPTSP+Y             SP+SP  SP SP +SPTSPN
Sbjct: 1601 STSPGFSPASPSFAPTSPAYSPTSPAYG----------QASPTSPSYSPTSPGFSPTSPN 1650

Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPS 1786
            YSPTS S+SP SP++SP+SP+YSP+SP   GG     SP+SP    S  Y+P++PG+SP+
Sbjct: 1651 YSPTSPSFSPASPAFSPTSPSYSPTSPA-VGGVGRHLSPTSPT---SPKYTPTSPGWSPT 1706

Query: 1787 STSQYTP 1793
            S   Y+P
Sbjct: 1707 SPQTYSP 1713


>gi|324120526|dbj|BAJ78654.1| RNA polymerase II largest subunit [Isonychia japonica]
          Length = 1530

 Score = 1694 bits (4388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 850/1556 (54%), Positives = 1089/1556 (69%), Gaps = 96/1556 (6%)

Query: 23   LSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHF 80
            LSPDEIR+MSV +  I   ET E G+PK GGL DPR G +DR  +C+TC  NM ECPGHF
Sbjct: 1    LSPDEIRRMSVTEGGIRFPETYEGGRPKLGGLMDPRQGVMDRNSRCQTCAGNMTECPGHF 60

Query: 81   GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-ALKIR-NPKNRLKKIL 138
            GH+ELAKP+FH+GF+K  + I+R VCF CSK+L    + K K+  +K +  P+ RL  + 
Sbjct: 61   GHIELAKPVFHVGFIKQTIKILRCVCFYCSKMLVSPTNPKIKEIVMKTKGQPRKRLTFVY 120

Query: 139  DACKNKTKCEGGDEIDV-------PGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKA 191
            D CK K  CEGGDE+D+       P   G +  K+  GGCG  QP +   G+ + AE+K 
Sbjct: 121  DLCKGKNICEGGDEMDLAKDPDRNPDDPGGQSKKQGHGGCGRYQPNIRRSGLDLSAEWK- 179

Query: 192  QRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPI 251
                N+D +      E+K  L+AERV  + K ISDE+C ++G++PKYARPDWMI  VLP+
Sbjct: 180  --HANEDTQ------EKKIALSAERVYEIFKHISDEECFIMGMDPKYARPDWMIATVLPV 231

Query: 252  PPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIA 301
            PP  VRP+          DDLTH+LA II+ N  L R E  GA AH++ E  ++LQFH+A
Sbjct: 232  PPLSVRPAVVMYGSARNQDDLTHKLADIIKANNELARNEMAGAAAHVLCENTKMLQFHVA 291

Query: 302  TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 361
            T  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP ++I
Sbjct: 292  TLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLHI 351

Query: 362  DQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYL 421
            DQ+GVP SIA NLT+PE VTP+N+E +++LV  G    PG   AKYI+RD+G+R+DLRY 
Sbjct: 352  DQVGVPRSIAQNLTFPEIVTPFNLEHMQDLVRRGNSQYPG---AKYIVRDNGERIDLRYH 408

Query: 422  KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPY 481
             K SD HL+ GY+VERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+STFR+NLSVTSPY
Sbjct: 409  PKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPY 468

Query: 482  NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRD 541
            NADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL   RK+T+RD
Sbjct: 469  NADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTRRD 528

Query: 542  TFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN 601
             FIEK+  MN+L++   +DGK+PQP ILKP+PLWTGKQ+F+LIIP  +N+ RT + H D+
Sbjct: 529  VFIEKEQMMNLLLFLPIWDGKMPQPAILKPKPLWTGKQIFSLIIPGNVNMIRTHSTHPDD 588

Query: 602  DK----GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHT 657
            +       ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E+G +   +F G+ 
Sbjct: 589  ENSGPYNWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEECGRFYGNI 648

Query: 658  QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
            Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A +  LEP PG T
Sbjct: 649  QTVVNNWLLLEGHSIGIGDTIADPQTYIEIQKAIKKAKEDVIEVIQKAHNMDLEPTPGNT 708

Query: 718  MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
            + ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQN
Sbjct: 709  LRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQN 768

Query: 778  VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
            VEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAV
Sbjct: 769  VEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAV 828

Query: 838  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
            KT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E Q L ++K+ 
Sbjct: 829  KTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLA 888

Query: 898  KSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIAT 957
              EF++ +RF+   E        ++ + +L    ++    + E + L+ DR  +  +   
Sbjct: 889  NDEFERGYRFDPSNERHLRRVFTEDVVKELMNSADVISELEREWELLKKDRDSM-RQTFP 947

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            SGD    LP NL+R+IWNAQK F ++ R+P+D+ P+ V+E V KL  +  +V GED LS 
Sbjct: 948  SGDDKVVLPCNLERMIWNAQKIFHINKRQPTDLSPLCVIEGVQKLLSKCIIVAGEDRLSR 1007

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            +A +NATL F  L+RS   +K V  ++RL+ EAFEW++GEIE+RF Q+   PGEM+G +A
Sbjct: 1008 QANENATLLFQCLVRSILCTKNVADKYRLSTEAFEWLVGEIETRFQQAQAQPGEMVGALA 1067

Query: 1078 AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTK 1137
            AQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VFL        
Sbjct: 1068 AQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDA 1127

Query: 1138 ERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISP 1197
            E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD D  P +ISP
Sbjct: 1128 EKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEFVNIYYEMPDFD--PTRISP 1185

Query: 1198 WLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKG 1257
            WLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIMN     G
Sbjct: 1186 WLLRIELDRKRMTDKKLTMEQIAEKINLGFGDDLNCIFNDDNAEKLVLRIRIMNSSGEDG 1245

Query: 1258 ELNDE-----SAEDDVFLKKIESNMLTEMALRGV-------------------------- 1286
            + NDE       EDD+FL+ IE+NML++M L+G+                          
Sbjct: 1246 KFNDEEEQADKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSKKKIVVTDNGR 1305

Query: 1287 --------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
                          +L+ V+   DVD  RT SN + EI  VLGIEAVR+++  E+  V+ 
Sbjct: 1306 FKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNQVLQ 1365

Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
            F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA  AE
Sbjct: 1366 FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAE 1425

Query: 1393 SDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVS 1452
             D +RGV+ENI++GQL  +GTG   L L+ E  K+ IE  +P++   L  GM      V 
Sbjct: 1426 VDPMRGVSENIIMGQLPRMGTGAFDLLLDAEKCKHGIE--IPTH---LGAGMMAGPGMVG 1480

Query: 1453 GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPS 1508
            G  ++ G  +P  + SP+  ++P        Y    A+SP    G +P  PG+SPS
Sbjct: 1481 GV-FYSGSATPSSM-SPH--MTPWNQGGTPSYAS--AWSPGVGSGMTPGGPGFSPS 1530


>gi|255941856|ref|XP_002561697.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586320|emb|CAP94069.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1733

 Score = 1694 bits (4387), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 892/1754 (50%), Positives = 1167/1754 (66%), Gaps = 143/1754 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            FPYS A +  ++ +QFG+ +P+EI++MSVV IE+ ET   +R +P+  G++DPRLGTIDR
Sbjct: 6    FPYSKAPLRTIKEIQFGLFAPEEIKRMSVVHIEYPETLDDQRQRPRTKGINDPRLGTIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            +  CETC     ECPGHFGH+ELA P+FHIGF+  +  ++ +VC NC KI A+  D KF 
Sbjct: 66   QYNCETCEEGPKECPGHFGHIELASPVFHIGFLTKIKKLLETVCHNCGKIKANTADSKFT 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKG----GCGAQQPKL 178
            +AL+ R+PK R   I    K+   CE     D P  D E   +  KG    GCG  QP +
Sbjct: 126  EALRFRDPKRRFDAIWRLSKDVLVCEA----DAPADDEEFSKESQKGRSHGGCGNAQPTV 181

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              EG+ ++  +K  +   +D+   PE    K+ +T    L + + IS ED +++GL+  Y
Sbjct: 182  RKEGICLVGTWKPSKAMMEDEMAQPE----KKVITPTMALNIFRNISVEDVRIMGLSNDY 237

Query: 239  ARPDWMILQVLPIPPPPVRPS------------DDLTHQLAMIIRHNENLRRQERNGAPA 286
            ARP+WMIL VLP+PPP VRPS            DDLT++LA I+R N+N++R E+ GAP 
Sbjct: 238  ARPEWMILTVLPVPPPTVRPSVVMGTTSGARGEDDLTYKLAEIVRANQNVQRCEQEGAPE 297

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            H+I EF  LLQ+HIATY DN++ GQP A Q+  RP+K++ SRLK KEGR+R NLMGKRVD
Sbjct: 298  HVIREFESLLQYHIATYMDNDIAGQPTAMQKGNRPVKALRSRLKGKEGRLRQNLMGKRVD 357

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP + +D++GVP+S A  LTYPE VTPYNIE+L+ LV  GP+  PG   A+
Sbjct: 358  FSARTVITGDPNLRLDEVGVPYSTARILTYPEVVTPYNIEKLQRLVANGPNLHPG---AR 414

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            YI+RD+G+R+DLR+ K++    L  G+KVERHL+DGD++LFNRQPSLHK S+MGHR+++M
Sbjct: 415  YIVRDNGERIDLRHAKRAGAQQLLYGWKVERHLDDGDYILFNRQPSLHKESMMGHRVRVM 474

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            P+STFR+NLSVTSPYNADFDGDEMN+HVPQ  E+RAE+ EL +VPK IVSPQ N P+MGI
Sbjct: 475  PFSTFRMNLSVTSPYNADFDGDEMNLHVPQGEESRAELAELTLVPKNIVSPQRNGPLMGI 534

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDTL G  KI +RDTF+ KD  MN+++W  D+DG +P P I+KPRP WTGKQ+ ++  P
Sbjct: 535  VQDTLCGIYKICRRDTFLTKDQVMNLMLWVPDWDGAIPPPAIIKPRPRWTGKQMISMAFP 594

Query: 587  KQINLFR--------TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLI 638
              +NL R        +  +   ND G+L  G        G+L+ G L KKT+G S G +I
Sbjct: 595  SGLNLLRVDKDGSPLSEKFSPLNDGGLLIHG--------GQLMYGMLSKKTVGASGGGVI 646

Query: 639  HVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNV 698
            H I+ E GPD   KF    Q +V YWLL N FSIGIGDTI D  T+  I + +   K  V
Sbjct: 647  HTIFNEYGPDTCVKFFTGAQTIVGYWLLHNGFSIGIGDTIPDQLTINKIEEAVRNRKQEV 706

Query: 699  KNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAG 758
            + +   A + +LE  PG  + E+FE+KV++ LN ARDEAG + +KSL + NN   M  +G
Sbjct: 707  EEITASATENTLEALPGMNVRETFESKVSRALNNARDEAGDATEKSLKDLNNAIQMARSG 766

Query: 759  SKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTP 818
            SKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP
Sbjct: 767  SKGSAINISQMTALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTP 826

Query: 819  QEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGE 878
             EFFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD+IQF+YGE
Sbjct: 827  TEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGE 886

Query: 879  DGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRDV 936
            DG+D   IE+Q +D +K   ++  + FR + MD E    P  +  E  +++    E++  
Sbjct: 887  DGLDGAHIENQRVDHIKCSDAKLLERFRVDVMDPERTLGPEIL--EQANEIAGDIEVQRY 944

Query: 937  FDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVV 996
            FD E + +  DR  L T +    +    LP+N++R++  A+ TF++     SD+HP EV+
Sbjct: 945  FDEEWEAILKDREFLRT-VVKEDEEMMQLPINVQRILEMARTTFRIREGTISDLHPAEVI 1003

Query: 997  EAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIG 1056
              V +L +RL +V G DP+S EAQ NATL F   LRS  A +R++ ++ L + AF+ V+G
Sbjct: 1004 PQVQQLLDRLVIVRGNDPISQEAQVNATLLFKAQLRSRLAFRRLVTDYSLNKLAFQHVLG 1063

Query: 1057 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1116
             IESRF ++   PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NV
Sbjct: 1064 AIESRFARAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNV 1123

Query: 1117 AKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDV 1176
            A  IKTPS++V+ +      KE AK ++  +E+T+LRSVTE+TE++YDPD   T+IE D 
Sbjct: 1124 ATNIKTPSMTVYQEGVKTHDKEGAKLLRSLVEHTSLRSVTESTEIYYDPDIQSTVIENDR 1183

Query: 1177 EFVKSYYEMPDE--DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCI 1234
            + V+SY+ +P++  D A ++ S WLLRI L+R  ++DK L++  VA +I Q +  D+  I
Sbjct: 1184 DMVESYFIIPEDNADDASQQ-SKWLLRIVLSRRSLLDKGLTVQDVATRIKQAYPRDIAVI 1242

Query: 1235 FNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-------- 1286
            F+D+NAD+ ++RIR + D     +  DE  E DV LKK+E ++L  + LRGV        
Sbjct: 1243 FSDNNADEQVIRIRQVQDYK---DDEDEDIEYDVTLKKLEQHLLDTLTLRGVPGVDRAFI 1299

Query: 1287 ---------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEV 1313
                                             +L AV+    VDA RT SN  IEI EV
Sbjct: 1300 NEKSKVRVVEDGTLHTSKSDPLCKEWVLETSGSSLAAVLAIPGVDASRTYSNQFIEIFEV 1359

Query: 1314 LGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMM 1373
             GIEA R A+L EL +V++FDGSYVN+RHLA+L D MT RG+L  +TRHGINR D G +M
Sbjct: 1360 FGIEAARTAVLRELTLVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALM 1419

Query: 1374 RCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQL 1433
            RCSFEETV+ILL+AA F E D  RGV+EN++LGQ+AP GTG+  +YL+  +L   +    
Sbjct: 1420 RCSFEETVEILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDVYLDQSLLNTVVSNNA 1479

Query: 1434 PSYMEGLEFGMTPARSPVSGTPYHDG--MMSPGYLFS--PNLRLSPVTDAQFSPYVGGMA 1489
               + G         S  + T Y  G  M S  Y+    PN   SP+      P  G   
Sbjct: 1480 RYGLMGAVGAKDAIISDGAATQYDTGSPMASSPYMAGGDPNSTFSPMHQIGQEPTGGLTE 1539

Query: 1490 FSPTSSP--GYSPSS---PGYSPSSPGYSP----------------------TSPGYSPT 1522
            +  T+S   G+SP++    GYSP+SP  +                       TSPG+SP 
Sbjct: 1540 YQATTSTFGGFSPAARSPGGYSPTSPFNTSPTSPGYSPSSSYSPTSPGIGMMTSPGFSPA 1599

Query: 1523 SPGYSPTSPGYSPTSPTY---SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1579
            SP + PTSP YSPTSP Y   SP+SP YSPTSP +SPTSP+YSPTSPS+SP SP++SPTS
Sbjct: 1600 SPTFQPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTS 1659

Query: 1580 PSYSPTSPSY---------SPTSPSYSPTSPSYSPTSP-AYSPTSPAYSPTSPAYSPTSP 1629
            PSYSPTSP+          SPTSP Y+PTSP +SPTSP +YSPTSP +S  SP  SPTSP
Sbjct: 1660 PSYSPTSPAIGGARHLSPTSPTSPKYTPTSPGWSPTSPQSYSPTSPNFS-GSPT-SPTSP 1717

Query: 1630 SYSPTSPSYSPTSP 1643
            +YSPTSP+YSPTSP
Sbjct: 1718 AYSPTSPAYSPTSP 1731



 Score =  160 bits (405), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 104/210 (49%), Positives = 129/210 (61%), Gaps = 50/210 (23%)

Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP----------------------TSPSYSP 1633
            Y  T+ ++   SPA + +   YSPTSP  +                       TSP +SP
Sbjct: 1540 YQATTSTFGGFSPA-ARSPGGYSPTSPFNTSPTSPGYSPSSSYSPTSPGIGMMTSPGFSP 1598

Query: 1634 TSPSYSPTSPSYSPTSPSY---SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
             SP++ PTSP+YSPTSP+Y   SPTSPSYSPTSP +SPTSP YSPTSPS+SP SP +SPT
Sbjct: 1599 ASPTFQPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPT 1658

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPA---SPYSPTSPNYSPTSSSYSPTSP-SYSPSSP 1746
            SPS             YSP+SP +  A   SP SPTSP Y+PTS  +SPTSP SYSP+SP
Sbjct: 1659 SPS-------------YSPTSPAIGGARHLSPTSPTSPKYTPTSPGWSPTSPQSYSPTSP 1705

Query: 1747 TY--SPSSPYNAGGGNPDYSPSSPQYSPSA 1774
             +  SP+SP      +P YSP+SP YSP++
Sbjct: 1706 NFSGSPTSPT-----SPAYSPTSPAYSPTS 1730



 Score =  122 bits (307), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 69/126 (54%), Positives = 88/126 (69%), Gaps = 16/126 (12%)

Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNY 1727
            TSPG+SP SP++ PTSP YSPTSP+Y             SP+SP  SP SP +SPTSPNY
Sbjct: 1592 TSPGFSPASPTFQPTSPAYSPTSPAYG----------QASPTSPSYSPTSPGFSPTSPNY 1641

Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
            SPTS S+SP SP++SP+SP+YSP+SP  A GG    SP+SP    S  Y+P++PG+SP+S
Sbjct: 1642 SPTSPSFSPASPAFSPTSPSYSPTSP--AIGGARHLSPTSPT---SPKYTPTSPGWSPTS 1696

Query: 1788 TSQYTP 1793
               Y+P
Sbjct: 1697 PQSYSP 1702


>gi|324120552|dbj|BAJ78667.1| RNA polymerase II largest subunit [Blattella nipponica]
          Length = 1598

 Score = 1694 bits (4386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 854/1574 (54%), Positives = 1098/1574 (69%), Gaps = 94/1574 (5%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDR 62
            F  S A +  V+ VQFGIL+PDEIR+MSV +  I+  ET E G+PK  GL DPR G +DR
Sbjct: 3    FSDSKAPLRAVKRVQFGILAPDEIRRMSVTEGGIKFAETYEGGRPKLQGLMDPRQGVMDR 62

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
              +C+TC  N  ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L    + K K
Sbjct: 63   NSRCQTCAGNQTECPGHFGHIDLAKPVFHVGFLTKSIKILRCVCFYCSKMLVSPTNPKIK 122

Query: 123  QALKIR--NPKNRLKKILDACKNKTKCEGGDEIDVPGQD-----GEEPLKKNKGGCGAQQ 175
            + +      P+ RL  + D CK K  CEGGDE+D+   +      ++P K+  GGCG  Q
Sbjct: 123  EVVMKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDNPDDPANQQPRKQGHGGCGRYQ 182

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P +   G+ + AE+K     N+D +      E+K +L+AERV  + K I+DE+C +LG++
Sbjct: 183  PNIRRTGLDLTAEWK---HVNEDSQ------EKKISLSAERVWEIFKHITDEECYILGMD 233

Query: 236  PKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAP 285
            PK+ARPDWMI+ VLP+PP  VRP+          DDLTH+LA II+ N  L R E+ GA 
Sbjct: 234  PKFARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKSNNELIRNEQAGAA 293

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
            AH+ISE  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRV
Sbjct: 294  AHVISENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRV 353

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVITPDP + IDQ+GVP SIA N+T+PE VTP+NI++++ELV  G    PG   A
Sbjct: 354  DFSARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNIDKMQELVRRGNSQYPG---A 410

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KYI+RD+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K+
Sbjct: 411  KYIVRDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDLVIFNRQPTLHKMSMMGHRVKV 470

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            +P+STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  L + P+ I++PQ+N+PVMG
Sbjct: 471  LPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQANKPVMG 530

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDTL   RK+TKRD F+EK+  MN+LM+   +DGK+PQP I+KP+PLWTGKQVF+LII
Sbjct: 531  IVQDTLTAVRKMTKRDVFLEKEQMMNLLMFLPIWDGKMPQPAIMKPKPLWTGKQVFSLII 590

Query: 586  PKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            P  +N+ RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+ 
Sbjct: 591  PGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHIC 650

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E+G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +
Sbjct: 651  FLELGHEVCGQFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEV 710

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
            I++A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKG
Sbjct: 711  IQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKG 770

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF
Sbjct: 771  SNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEF 830

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+
Sbjct: 831  FFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGL 890

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
                +E Q L ++K+    F+K F+F+   E +      ++ + +L    ++    + E 
Sbjct: 891  CGETVEFQNLPTIKLSNRAFEKKFKFDPTNERYLRRIFSEDVLKELMGSGDVISELEREW 950

Query: 942  QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
            ++L  DR  L  +I  SG+S   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V  
Sbjct: 951  EQLVKDREAL-RQIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIKGVSD 1009

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L  +  +V G+D LS +A +NATL F  L+RST  +K V +E RL+  AFEW+IGEIE+R
Sbjct: 1010 LLRKCIIVAGDDHLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSVAFEWLIGEIETR 1069

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F Q+ V+PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K
Sbjct: 1070 FQQAQVSPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPK 1129

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
             PSL+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  
Sbjct: 1130 APSLTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNV 1189

Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+
Sbjct: 1190 YYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAE 1247

Query: 1242 KLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV------------ 1286
            KL+LRIRIMN +  K +  +E+    EDD+FL+ IE+NML++M L+G+            
Sbjct: 1248 KLVLRIRIMNSDDNKFQDEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQ 1307

Query: 1287 ----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEA 1318
                                        +++ V+   DVD  RT SN + EI  VLGIEA
Sbjct: 1308 TDSKKRIIVTDTGEFKAIAEWLLETDGTSMMKVLSERDVDTNRTFSNDICEIFSVLGIEA 1367

Query: 1319 VRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE 1378
            VR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFE
Sbjct: 1368 VRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFE 1427

Query: 1379 ETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL------- 1431
            ETVD+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K  IE+       
Sbjct: 1428 ETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGCFDLLLDAEKCKAGIEIPMSVGAG 1487

Query: 1432 QLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFS 1491
             +           TP+ SP   TP+  G  +P Y+ S     SP          GG +FS
Sbjct: 1488 MMGGGGMFFGSAATPSMSP-HMTPWAQG-ATPAYVSS----WSPGNMLGSGATPGGPSFS 1541

Query: 1492 PTSSPGYSPSSPGY 1505
            P+ +   S  SPGY
Sbjct: 1542 PSGASDASGLSPGY 1555


>gi|302662921|ref|XP_003023110.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
 gi|291187089|gb|EFE42492.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
          Length = 1744

 Score = 1694 bits (4386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 915/1773 (51%), Positives = 1198/1773 (67%), Gaps = 145/1773 (8%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTI 60
             RFPYS A++  ++ +QFG+LSP+EI++MSV  +E+ ET   +R +P+  GL+DPRLGTI
Sbjct: 4    VRFPYSKAQLRTIKEIQFGLLSPEEIKRMSVCHVEYPETMDDQRQRPREKGLNDPRLGTI 63

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DR  +C TC   + +CPGHFGH+EL+ P+FHIGF+  +  ++ +VC NC KI A+  D K
Sbjct: 64   DRNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQK 123

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGG--DEIDVPGQDGEEPLKKNKGGCGAQQPKL 178
            +  AL+ R+PK R   I    K+   CE    +E D   ++  +P++ + GGCG  QP++
Sbjct: 124  YLDALRFRDPKKRFDAIWRLSKDILICEADPPEEDDPFAKESSKPVQGH-GGCGNVQPQV 182

Query: 179  TIEGMKMIAEYKAQRKKN---DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
              EG+ ++  +K  + ++   D++ Q PE    K+ +T +  L + + IS+ED +L+GL+
Sbjct: 183  RKEGITLMGTWKPSKMRDMMDDNEIQQPE----KKQITPQMALTIFRNISEEDVRLMGLS 238

Query: 236  PKYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WMI+ VLP+PPPPV             R  DDLT++LA IIR N+N+ R E+ 
Sbjct: 239  NDYARPEWMIITVLPVPPPPVRPSVLVGGSGTGQRGEDDLTYKLAEIIRANQNVTRCEQE 298

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P H++ EF  LLQ+H+ATY DN++ G P+A Q+S RP+K+I  RLK KEGR+R NLMG
Sbjct: 299  GSPEHVVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMG 358

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT DP +++D++GVP SIA  LTYPE VTPYNI RL +LV+ GP   PG 
Sbjct: 359  KRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNGPDVHPG- 417

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
              A+Y+IR  G+R+DLR+ K     + L+ G+KVERHL DGDF+LFNRQPSLHK S+M H
Sbjct: 418  --ARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSLHKESMMSH 475

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
            R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L +VP  IVSPQ N 
Sbjct: 476  RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVSPQRNG 535

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
            P+MGIVQDTL G  KI +RD F+ K+  MN+L+W  D+DG +PQP ILKPRP W+GKQ+ 
Sbjct: 536  PLMGIVQDTLCGIYKICRRDVFLTKEQVMNVLLWVPDWDGVLPQPAILKPRPRWSGKQMI 595

Query: 582  NLIIPKQINLFRTAAWHADNDKGILTA-----GDTLVRIEKGELLSGTLCKKTLGTSTGS 636
            ++++P  +NL R      D DK  ++       D  V +  GEL+ G   KKT+G S G 
Sbjct: 596  SMVLPSGLNLLRI-----DKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVGASGGG 650

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            ++H I+ E GPDAA  F    Q +VNYWLL N FSIGIGDTI D +T++ I + +   K 
Sbjct: 651  VVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGDTIPDLETIQKIENAVRVRKE 710

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
             V ++   A + +LE  PG  + E+FE+KV++ LN ARDEAG++ +KSL +SNN   M  
Sbjct: 711  EVDSITASATENTLEALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMAR 770

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
            +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGL
Sbjct: 771  SGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGL 830

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
            TP EFFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD++QFLY
Sbjct: 831  TPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIVQFLY 890

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEEN-WNPNYMLQ--EYIDDLKTIKE 932
            GEDG+D   IE+Q +D +K    +F   FR + MD E   +P+ + Q  E   D++  K 
Sbjct: 891  GEDGLDGQCIENQRVDVIKCSDEQFRNRFRVDLMDPERLLSPDILEQATEIAGDIEVQKH 950

Query: 933  LRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHP 992
            L    D E ++L  DR  L T +    D    LP+N++R++ +A+ TF++     SD+HP
Sbjct: 951  L----DEEWEQLLKDRAFLRT-VVKEDDEMMQLPINIQRILESAKTTFRIRDGTISDLHP 1005

Query: 993  MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1052
             EVV  V +L +RL VV G+D LS EAQ++ATL F   LRS  A +R++ E+ L + AF+
Sbjct: 1006 AEVVPQVRQLLDRLLVVRGDDALSREAQESATLLFKAQLRSRLAFRRLVVEYSLNKLAFQ 1065

Query: 1053 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1112
             V+G IESRF ++   PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+E
Sbjct: 1066 HVLGAIESRFGKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKE 1125

Query: 1113 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1172
            I+NVA  IKTPS++V+  P     KE AK ++  +E+T+LRSVTE+TE++YDP+   T+I
Sbjct: 1126 ILNVATNIKTPSMTVYQAPECRMNKESAKQLRSIVEHTSLRSVTESTEIYYDPNIQSTVI 1185

Query: 1173 EEDVEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDD 1230
            E D++ V+SY+ +P ED+A +  + S WLLRI L+R  ++DK L++  VA KI + +  D
Sbjct: 1186 ENDIDMVESYFIIP-EDVADDSSRQSKWLLRIILSRPKLLDKGLTVQDVATKIKEAYPQD 1244

Query: 1231 LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---- 1286
            +  IF+D+NAD+ ++RIR + D  PK + +D+  E DV LKK+ES++L  + LRGV    
Sbjct: 1245 IAVIFSDNNADEQVVRIRQIQD--PKQDEDDDDTEYDVTLKKLESHLLDTLTLRGVPGID 1302

Query: 1287 -------------------------------------NLLAVMCHEDVDARRTTSNHLIE 1309
                                                  L  V+    +DA RT SN  +E
Sbjct: 1303 RAFINEKSRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRTYSNQFVE 1362

Query: 1310 IIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1369
            I+EV GIEA R ALL EL  V++FDGSYVN+RHLA+L D MT RG LMA+TRHGINR DT
Sbjct: 1363 ILEVFGIEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADT 1422

Query: 1370 GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI 1429
            G +MRCSFEETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+  +YL+  ML   +
Sbjct: 1423 GALMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQSMLMGVV 1482

Query: 1430 ELQLPSYMEGLE-FGMT---PARSPVSGTPYHDGMMSPGYLFS--PNLRLSPVTDAQFSP 1483
                     G E  GM     A    SG+P  + M    Y+ S  P+ + SPV  A    
Sbjct: 1483 SNNAGLGAMGEEPKGMLSDGAATQYDSGSPMQENM----YISSPDPDSQFSPVRQAGSEN 1538

Query: 1484 YVGGMAFSPTSSPGYSPSSP-----GYSPSSP-GYSPTSPGYSPTSPGYSPTSPGYSPTS 1537
             VG   + P S  G+SP  P     GYSPSSP   SPTSP YSP+S GYSPTSPG S TS
Sbjct: 1539 AVGFADYQPPSYGGFSPHEPRSPGGGYSPSSPFNTSPTSPAYSPSS-GYSPTSPGMSITS 1597

Query: 1538 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY----SPTSPSYSPTSPS------------ 1581
            P +  SSP +SP SP+++PTSP+YSPTSP Y    SPTSPSYSPTSP             
Sbjct: 1598 PRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTS 1656

Query: 1582 ---------YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP-SY 1631
                     +SPTSPSYSPTSP+   T    SPT    SPTSP Y+PTSP +SPTSP +Y
Sbjct: 1657 PSFSPASPVFSPTSPSYSPTSPALGGTGRHLSPT----SPTSPKYTPTSPGWSPTSPEAY 1712

Query: 1632 SPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPT 1662
            SPTSP++  SPTSP   PTSP YSPTSP+++PT
Sbjct: 1713 SPTSPNFSGSPTSPG-GPTSPGYSPTSPTFNPT 1744



 Score =  160 bits (406), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 115/237 (48%), Positives = 141/237 (59%), Gaps = 52/237 (21%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSP-SYSPTSPSY 1603
            +SP   A S  +  ++   P      PSY   SP + P SP   YSP+SP + SPTSP+Y
Sbjct: 1528 FSPVRQAGSENAVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1580

Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSY 1659
            SP+S  YSPTSP  S TSP +  +SP++SP SPS++PTSP+YSPTSP Y    SPTSPSY
Sbjct: 1581 SPSS-GYSPTSPGMSITSPRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1638

Query: 1660 SPTSPA---------------------YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
            SPTSP                      +SPTSP YSPTSP+   T    SPTSP+     
Sbjct: 1639 SPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRHLSPTSPT----- 1693

Query: 1699 AKYSPSLAYSPSSPRLSPASP--YSPTSPNY--SPTSSSYSPTSPSYSPSSPTYSPS 1751
                 S  Y+P+SP  SP SP  YSPTSPN+  SPTS    PTSP YSP+SPT++P+
Sbjct: 1694 -----SPKYTPTSPGWSPTSPEAYSPTSPNFSGSPTSPG-GPTSPGYSPTSPTFNPT 1744



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/235 (47%), Positives = 139/235 (59%), Gaps = 47/235 (20%)

Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA--YSPTSP-AYSPTSPAY 1624
            +SP   + S  +  ++   P      PSY   SP + P SP   YSP+SP   SPTSPAY
Sbjct: 1528 FSPVRQAGSENAVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1580

Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY----SPTSPSY 1680
            SP+S  YSPTSP  S TSP +  +SP++SP SPS++PTSPAYSPTSPGY    SPTSPSY
Sbjct: 1581 SPSS-GYSPTSPGMSITSPRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1638

Query: 1681 SPTSP---------------------TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
            SPTSP                      +SPTSPSY+P S    P+L  +         SP
Sbjct: 1639 SPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTS----PALGGTGRH-----LSP 1689

Query: 1720 YSPTSPNYSPTSSSYSPTSP-SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
             SPTSP Y+PTS  +SPTSP +YSP+SP +S S     G  +P YSP+SP ++P+
Sbjct: 1690 TSPTSPKYTPTSPGWSPTSPEAYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFNPT 1744



 Score =  141 bits (356), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 107/232 (46%), Positives = 142/232 (61%), Gaps = 40/232 (17%)

Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA--YSPTSP-AYSPTSPSY 1631
            +SP   + S  +  ++   P      PSY   SP + P SP   YSP+SP   SPTSP+Y
Sbjct: 1528 FSPVRQAGSENAVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1580

Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY----SPTSPTY 1687
            SP+S  YSPTSP  S TSP +  +SP++SP SP+++PTSP YSPTSP Y    SPTSP+Y
Sbjct: 1581 SPSS-GYSPTSPGMSITSPRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1638

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS----------SSYSPT 1737
            SPTSP ++P S  YSP+      +  +     +SPTSP+YSPTS          S  SPT
Sbjct: 1639 SPTSPGFSPTSPSYSPTSPSFSPASPV-----FSPTSPSYSPTSPALGGTGRHLSPTSPT 1693

Query: 1738 SPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY--SPSAGYSPSAPGYSPSS 1787
            SP Y+P+SP +SP+SP         YSP+SP +  SP++   P++PGYSP+S
Sbjct: 1694 SPKYTPTSPGWSPTSP-------EAYSPTSPNFSGSPTSPGGPTSPGYSPTS 1738



 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 101/208 (48%), Gaps = 66/208 (31%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG--YSPTSP-SYSPTSPTY 1687
            +SP   + S  +  ++   P      PSY   SP + P SPG  YSP+SP + SPTSP Y
Sbjct: 1528 FSPVRQAGSENAVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1580

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY------ 1741
            SP+S               YSP+SP +S  SP   +SP +SP S S++PTSP+Y      
Sbjct: 1581 SPSS--------------GYSPTSPGMSITSPRFISSPAFSPASPSFAPTSPAYSPTSPG 1626

Query: 1742 -----SPSSPTYSPSSPYNAGGGNPD-------------YSPSSPQYSPSA--------- 1774
                 SP+SP+YSP+SP  +                   +SP+SP YSP++         
Sbjct: 1627 YGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRH 1686

Query: 1775 ---------GYSPSAPGYSPSSTSQYTP 1793
                      Y+P++PG+SP+S   Y+P
Sbjct: 1687 LSPTSPTSPKYTPTSPGWSPTSPEAYSP 1714


>gi|358370099|dbj|GAA86711.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus kawachii
            IFO 4308]
          Length = 1747

 Score = 1693 bits (4385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 910/1758 (51%), Positives = 1192/1758 (67%), Gaps = 109/1758 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            FPYS A +  ++ +QFG+ SP+EI++MSVV +E+ ET   +R +P+  GL+DPRLGTIDR
Sbjct: 6    FPYSKAPLRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDDQRQRPRTKGLNDPRLGTIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            +  CETC     ECPGHFGH+ELA P++HIGF+  +  ++ +VC NC KI A+  D KF 
Sbjct: 66   QWNCETCEEGQKECPGHFGHIELATPVYHIGFLTKIKKLLETVCHNCGKIKANTSDPKFL 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK--KNKGGCGAQQPKLTI 180
            +AL++R+PK R   I    K+   CE     D      +E  K  +  GGCG  QP++  
Sbjct: 126  EALRMRDPKRRFDHIWRLSKDVLICEADPPPDDDEPFSKENSKPVRMHGGCGNAQPQIRK 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EG+ ++  +K  +  ++   Q PE    K+ +T +  L V + IS ED +++GL+  YAR
Sbjct: 186  EGITLVGTWKPNKMMDEMDMQQPE----KKVITPQVALNVFRNISYEDVRIMGLSNDYAR 241

Query: 241  PDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
            P+WMI+ VLP+PPPPV             R  DDLT++LA I+R N+N++R E+ GAP H
Sbjct: 242  PEWMIITVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIVRANQNVQRCEQEGAPEH 301

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            ++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I SRLK KEGR+R NLMGKRVDF
Sbjct: 302  VVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDF 361

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVIT DP ++++++GVP SIA  LTYPE VTPYNIE+L+ LV  GP+  PG   A+Y
Sbjct: 362  SARTVITGDPNLSLEEVGVPKSIARTLTYPEVVTPYNIEKLQTLVSNGPNEHPG---ARY 418

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            I+RD+G+R+DLR+ K++    L  G+KVERH+ DGD +LFNRQPSLHK S+MGHR+++MP
Sbjct: 419  IVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNRQPSLHKESMMGHRVRVMP 478

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            YSTFRLNLSVT+PYNADFDGDEMN+HVPQS E+RAE+ +L +VP  IVSPQ N P+MGIV
Sbjct: 479  YSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSPQRNGPLMGIV 538

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL G  KI +RD F+ KD  MNI+MW  D+DG +P P ILKPRP WTGKQ+ ++ +P 
Sbjct: 539  QDTLCGIYKICRRDVFLTKDQVMNIMMWVPDWDGVIPPPAILKPRPRWTGKQMISMALPS 598

Query: 588  QINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             +NL R    ++   +      D  + I  G+L+ G   KKT+G S G +IH I+ E G 
Sbjct: 599  GLNLLRVDKDNSPLSEKFSPLADGGLLIHNGQLMYGMFSKKTVGASGGGVIHTIFNEYGH 658

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
              A  F    Q +VNYWLL N FSIGIGDTI D  T++ I + +   K  V+++   A D
Sbjct: 659  GTAVAFFNGAQRIVNYWLLHNGFSIGIGDTIPDELTIQRIENCVRNRKKEVESITASATD 718

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
             +LEP PG  + E+FE+KV++ LN ARDEAGS  +KSL + NN   M  +GSKGS INIS
Sbjct: 719  NTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINIS 778

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            QMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM 
Sbjct: 779  QMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMA 838

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD+IQF+YGEDG+D   IE
Sbjct: 839  GREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAHIE 898

Query: 888  SQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +Q +D +K    +F   FR + MD E    P  +  E  +++    E++   D E + L 
Sbjct: 899  NQRVDIIKCSDDKFRDRFRVDLMDPERTLGPEVL--EQANEIAGDVEVQRHLDEEWEDLL 956

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L + +A   +    LP+N++R++  A+ TF++     SD+HP EV+  V  L +R
Sbjct: 957  KDRAFLRS-VAKEDEEMMQLPINVQRILETARTTFRIREGTISDLHPAEVIPQVRSLLDR 1015

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
            L VV G+D +S EAQ+NATL F   LRS  A +R++ E+ + + AF+ VIG IESRF ++
Sbjct: 1016 LLVVRGDDIISREAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAIESRFAKA 1075

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
               PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA  IKTPS+
Sbjct: 1076 GANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSM 1135

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +V+ +   +  KE AK ++ A+E+T+LRSVTEATE++YDPD   T+IE D + V+SY+ +
Sbjct: 1136 TVYQEAARSFDKEGAKQLRSAVEHTSLRSVTEATEIYYDPDIQTTVIENDRDMVESYFII 1195

Query: 1186 PDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
            P ED+  +  + S WLLRI L+R  ++DK L++  VA +I   +  D+  IF+D+NAD+ 
Sbjct: 1196 P-EDVTDDASRQSKWLLRIILSRPKLLDKGLTVQDVASRIKAAYPKDIAVIFSDNNADEQ 1254

Query: 1244 ILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV----------------- 1286
            ++RIR +  +  K +  D+  E DV LKK+E ++L  + LRGV                 
Sbjct: 1255 VIRIRQI--QDYKEDEEDDDIEYDVTLKKLEQHLLDTLTLRGVPGVERAFINEKSKVRVL 1312

Query: 1287 ---NLLAV----MCHE-----------------DVDARRTTSNHLIEIIEVLGIEAVRRA 1322
               +L A     +C E                  VDA RT SN  IE+ EV GIEA R A
Sbjct: 1313 EDGSLFASKTDPLCKEWVLETSGSSLGEVLAIPGVDATRTYSNQFIEVFEVFGIEAARTA 1372

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            +L EL  V++FDGSYVN+RHLA+L D MT RG+L  +TRHGINR D G +MRCSFEETV+
Sbjct: 1373 VLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVE 1432

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEF 1442
            ILL+AA F E D  RGV+EN++LGQ+AP GTG+  +YL+  ++   +       + G   
Sbjct: 1433 ILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDIYLDQNLMNTVVSNNARFGVMGAIG 1492

Query: 1443 GMTPARSPVSGTPYHDG--MMSPGYLFSPN--LRLSPVTDA---------QFSPYVG-GM 1488
                  S  + T Y  G  M    Y+ +P+     SP+  A         ++ P  G G 
Sbjct: 1493 AKDAIISDGAATQYDTGSPMQESAYIGTPDPESNFSPIRQAGAETPGGFTEYQPTGGFGG 1552

Query: 1489 AFSP--TSSPGYSPSSP-GYSPSSPG------YSPTSPGYSPTSPGYSPTSPGYSPTSPT 1539
             FSP  TS  GYSPSSP   +P+SPG      YSPTSPG + TSP +  TSPG+SP SP+
Sbjct: 1553 GFSPAATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMAITSPRFMSTSPGFSPASPS 1612

Query: 1540 YSPSSPGYSPTSPAY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1596
            ++P+SP YSPTSPAY   SPTSPSYSPTSP +SPTSP+YSPTSPS+SP SP++SPTSPSY
Sbjct: 1613 FAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSY 1672

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP-SYSPTSPSY--SPTSPSYS 1653
            SPTSP+        SPT    SPTSP Y+PTSP +SPTSP +YSPTSP++  SPTSP   
Sbjct: 1673 SPTSPAVGGVGRHLSPT----SPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPG-G 1727

Query: 1654 PTSPSYSPTSPAYSPTSP 1671
            PTSP YSPTSPA+SPTSP
Sbjct: 1728 PTSPGYSPTSPAFSPTSP 1745



 Score =  157 bits (397), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 109/219 (49%), Positives = 133/219 (60%), Gaps = 46/219 (21%)

Query: 1603 YSPTSPAYSPTSPAYSPTSPA-YSPTSP-SYSPTSPS-------------YSPTSPSYSP 1647
            Y PT       SPA   TSPA YSP+SP S +PTSP               + TSP +  
Sbjct: 1544 YQPTGGFGGGFSPA--ATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMAITSPRFMS 1601

Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGY---SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            TSP +SP SPS++PTSPAYSPTSP Y   SPTSPSYSPTSP +SPTSP+Y          
Sbjct: 1602 TSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNY---------- 1651

Query: 1705 LAYSPSSPRLSPASP-YSPTSPNYSPTS----------SSYSPTSPSYSPSSPTYSPSSP 1753
               SP+SP  SPASP +SPTSP+YSPTS          S  SPTSP Y+P+SP +SP+SP
Sbjct: 1652 ---SPTSPSFSPASPAFSPTSPSYSPTSPAVGGVGRHLSPTSPTSPKYTPTSPGWSPTSP 1708

Query: 1754 YNAGGGNPDY--SPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
                  +P++  SP+SP    S GYSP++P +SP+S  Q
Sbjct: 1709 QTYSPTSPNFAGSPTSPGGPTSPGYSPTSPAFSPTSPRQ 1747



 Score =  137 bits (346), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 121/187 (64%), Gaps = 20/187 (10%)

Query: 1610 YSPTSPAYSPTSPAYSPTSPS-YSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
            Y PT       SPA   TSP+ YSP+SP S +PTSP YSPTS     +    + TSP + 
Sbjct: 1544 YQPTGGFGGGFSPA--ATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSP-GMAITSPRFM 1600

Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPN 1726
             TSPG+SP SPS++PTSP YSPTSP+Y             SP+SP  SP SP +SPTSPN
Sbjct: 1601 STSPGFSPASPSFAPTSPAYSPTSPAYG----------QASPTSPSYSPTSPGFSPTSPN 1650

Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPS 1786
            YSPTS S+SP SP++SP+SP+YSP+SP   GG     SP+SP    S  Y+P++PG+SP+
Sbjct: 1651 YSPTSPSFSPASPAFSPTSPSYSPTSPA-VGGVGRHLSPTSPT---SPKYTPTSPGWSPT 1706

Query: 1787 STSQYTP 1793
            S   Y+P
Sbjct: 1707 SPQTYSP 1713


>gi|350638666|gb|EHA27022.1| DNA-directed RNA polymerase II, largest subunit [Aspergillus niger
            ATCC 1015]
          Length = 1743

 Score = 1693 bits (4384), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 908/1756 (51%), Positives = 1191/1756 (67%), Gaps = 109/1756 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            FPYS A +  ++ +QFG+ SP+EI++MSVV +E+ ET   +R +P+  GL+DPRLGTIDR
Sbjct: 6    FPYSKAPLRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDDQRQRPRTKGLNDPRLGTIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            +  CETC     ECPGHFGH+ELA P++HIGF+  +  ++ +VC NC KI A+  D KF 
Sbjct: 66   QWNCETCEEGQKECPGHFGHIELATPVYHIGFLTKIKKLLETVCHNCGKIKANTSDPKFL 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK--KNKGGCGAQQPKLTI 180
            +AL++R+PK R   I    K+   CE     D      +E  K  +  GGCG  QP++  
Sbjct: 126  EALRMRDPKRRFDHIWRLSKDVLICEADPPPDDDEPFSKENAKPVRMHGGCGNAQPQIRK 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EG+ ++  +K  +  ++   Q PE    K+ +T +  L V + IS ED +++GL+  YAR
Sbjct: 186  EGITLVGTWKPNKMMDEMDMQQPE----KKVITPQVALNVFRNISYEDVRIMGLSNDYAR 241

Query: 241  PDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
            P+WMI+ VLP+PPPPV             R  DDLT++LA I+R N+N++R E+ GAP H
Sbjct: 242  PEWMIITVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIVRANQNVQRCEQEGAPEH 301

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            ++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I SRLK KEGR+R NLMGKRVDF
Sbjct: 302  VVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDF 361

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVIT DP ++++++GVP SIA  LTYPE VTPYNIE+L+ LV  GP+  PG   A+Y
Sbjct: 362  SARTVITGDPNLSLEEVGVPKSIARTLTYPEVVTPYNIEKLQTLVSNGPNEHPG---ARY 418

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            I+RD+G+R+DLR+ K++    L  G+KVERH+ DGD +LFNRQPSLHK S+MGHR+++MP
Sbjct: 419  IVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNRQPSLHKESMMGHRVRVMP 478

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            YSTFRLNLSVT+PYNADFDGDEMN+HVPQS E+RAE+ +L +VP  IVSPQ N P+MGIV
Sbjct: 479  YSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSPQRNGPLMGIV 538

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL G  KI +RD F+ KD  MNI+MW  D+DG +P P ILKPRP WTGKQ+ ++ +P 
Sbjct: 539  QDTLCGIYKICRRDVFLTKDQVMNIMMWVPDWDGVIPPPAILKPRPRWTGKQMISMALPS 598

Query: 588  QINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             +NL R    ++   +      D  + I  G+L+ G   KKT+G S G +IH I+ E G 
Sbjct: 599  GLNLLRVDKDNSPLSEKFSPLADGGLLIHNGQLMYGMFSKKTVGASGGGVIHTIFNEYGH 658

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
              A  F    Q +VNYWLL N FSIGIGDTI D  T++ I + +   K  V+++   A D
Sbjct: 659  GTAVAFFNGAQRIVNYWLLHNGFSIGIGDTIPDELTIQRIENCVRNRKKEVESITASATD 718

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
             +LEP PG  + E+FE+KV++ LN ARDEAGS  +KSL + NN   M  +GSKGS INIS
Sbjct: 719  NTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSKGSTINIS 778

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            QMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM 
Sbjct: 779  QMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMA 838

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD+IQF+YGEDG+D   IE
Sbjct: 839  GREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAHIE 898

Query: 888  SQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +Q +D +K    +F + FR + MD E    P  +  E  +++    E++   D E ++L 
Sbjct: 899  NQRVDIIKCSDDKFRERFRVDLMDPERTLGPEVL--EQANEIAGDVEVQRHLDEEWEELL 956

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L + +A   +    LP+N++R++  A+ TF++     SD+HP EV+  V  L +R
Sbjct: 957  KDRAFLRS-VAKEDEEMMQLPINVQRILETARTTFRIREGTISDLHPAEVIPQVRSLLDR 1015

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
            L VV G D +S EAQ+NATL F   LRS  A +R++ E+ + + AF+ VIG IESRF ++
Sbjct: 1016 LLVVRGNDIISREAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAIESRFAKA 1075

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
               PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA  IKTPS+
Sbjct: 1076 GANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSM 1135

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +V+ +   +  KE AK ++ A+E+T+LRSVTEATE++YDPD   T+IE D + V+SY+ +
Sbjct: 1136 TVYQEAARSFDKEGAKQLRSAVEHTSLRSVTEATEIYYDPDIQTTVIENDRDMVESYFII 1195

Query: 1186 PDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
            P ED+  +  + S WLLRI L+R  ++DK L++  VA +I   +  D+  IF+D+NAD+ 
Sbjct: 1196 P-EDVTDDASRQSKWLLRIILSRPKLLDKGLTVQDVASRIKAAYPKDIAVIFSDNNADEQ 1254

Query: 1244 ILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV----------------- 1286
            ++RIR +  +  K +  D+  E DV LKK+E ++L  + LRGV                 
Sbjct: 1255 VIRIRQI--QDYKEDEEDDDIEYDVTLKKLEQHLLDTLTLRGVPGVERAFINEKSKVRVL 1312

Query: 1287 ---NLLAV----MCHE-----------------DVDARRTTSNHLIEIIEVLGIEAVRRA 1322
               +L A     +C E                  VDA RT SN  IE+ EV GIEA R A
Sbjct: 1313 EDGSLFASKTDPLCKEWVLETSGSSLGEVLAIPGVDATRTYSNQFIEVFEVFGIEAARTA 1372

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            +L EL  V++FDGSYVN+RHLA+L D MT RG+L  +TRHGINR D G +MRCSFEETV+
Sbjct: 1373 VLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVE 1432

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEF 1442
            ILL+AA F E D  RGV+EN++LGQ+AP GTG+  +YL+  ++   +       + G   
Sbjct: 1433 ILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDIYLDQNLMNTVVSNNARFGVMGAIG 1492

Query: 1443 GMTPARSPVSGTPYHDG--MMSPGYLFSPN--LRLSPVTDA---------QFSPYVG-GM 1488
                  S  + T Y  G  M    Y+ +P+     SP+  A         ++ P  G G 
Sbjct: 1493 AKDAIISDGAATQYDTGSPMQESAYIGTPDPESNFSPIRQAGAETPGGFTEYQPTGGFGG 1552

Query: 1489 AFSP--TSSPGYSPSSP-GYSPSSPG------YSPTSPGYSPTSPGYSPTSPGYSPTSPT 1539
             FSP  TS  GYSPSSP   +P+SPG      YSPTSPG + TSP +  TSPG+SP SP+
Sbjct: 1553 GFSPAATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMAITSPRFMSTSPGFSPASPS 1612

Query: 1540 YSPSSPGYSPTSPAY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1596
            ++P+SP YSPTSPAY   SPTSPSYSPTSP +SPTSP+YSPTSPS+SP SP++SPTSPSY
Sbjct: 1613 FAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSY 1672

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP-SYSPTSPSY--SPTSPSYS 1653
            SPTSP+        SPT    SPTSP Y+PTSP +SPTSP +YSPTSP++  SPTSP   
Sbjct: 1673 SPTSPAVGGVGRHLSPT----SPTSPKYTPTSPGWSPTSPQTYSPTSPNFAGSPTSPG-G 1727

Query: 1654 PTSPSYSPTSPAYSPT 1669
            PTSP YSPTSPA+SPT
Sbjct: 1728 PTSPGYSPTSPAFSPT 1743



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/215 (49%), Positives = 131/215 (60%), Gaps = 46/215 (21%)

Query: 1603 YSPTSPAYSPTSPAYSPTSPA-YSPTSP-SYSPTSPS-------------YSPTSPSYSP 1647
            Y PT       SPA   TSPA YSP+SP S +PTSP               + TSP +  
Sbjct: 1544 YQPTGGFGGGFSPA--ATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSPGMAITSPRFMS 1601

Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGY---SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            TSP +SP SPS++PTSPAYSPTSP Y   SPTSPSYSPTSP +SPTSP+Y          
Sbjct: 1602 TSPGFSPASPSFAPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNY---------- 1651

Query: 1705 LAYSPSSPRLSPASP-YSPTSPNYSPTS----------SSYSPTSPSYSPSSPTYSPSSP 1753
               SP+SP  SPASP +SPTSP+YSPTS          S  SPTSP Y+P+SP +SP+SP
Sbjct: 1652 ---SPTSPSFSPASPAFSPTSPSYSPTSPAVGGVGRHLSPTSPTSPKYTPTSPGWSPTSP 1708

Query: 1754 YNAGGGNPDY--SPSSPQYSPSAGYSPSAPGYSPS 1786
                  +P++  SP+SP    S GYSP++P +SP+
Sbjct: 1709 QTYSPTSPNFAGSPTSPGGPTSPGYSPTSPAFSPT 1743



 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 121/187 (64%), Gaps = 20/187 (10%)

Query: 1610 YSPTSPAYSPTSPAYSPTSPS-YSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
            Y PT       SPA   TSP+ YSP+SP S +PTSP YSPTS     +    + TSP + 
Sbjct: 1544 YQPTGGFGGGFSPA--ATSPAGYSPSSPFSANPTSPGYSPTSSYSPTSP-GMAITSPRFM 1600

Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPN 1726
             TSPG+SP SPS++PTSP YSPTSP+Y             SP+SP  SP SP +SPTSPN
Sbjct: 1601 STSPGFSPASPSFAPTSPAYSPTSPAYG----------QASPTSPSYSPTSPGFSPTSPN 1650

Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPS 1786
            YSPTS S+SP SP++SP+SP+YSP+SP   GG     SP+SP    S  Y+P++PG+SP+
Sbjct: 1651 YSPTSPSFSPASPAFSPTSPSYSPTSPA-VGGVGRHLSPTSPT---SPKYTPTSPGWSPT 1706

Query: 1787 STSQYTP 1793
            S   Y+P
Sbjct: 1707 SPQTYSP 1713


>gi|327294163|ref|XP_003231777.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
            CBS 118892]
 gi|326465722|gb|EGD91175.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
            CBS 118892]
          Length = 1744

 Score = 1691 bits (4380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1772 (51%), Positives = 1197/1772 (67%), Gaps = 145/1772 (8%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTID 61
            RFPYS A++  ++ +QFG+LSP+EI++MSV  +E+ ET   +R +P+  GL+DPRLGTID
Sbjct: 5    RFPYSKAQLRTIKEIQFGLLSPEEIKRMSVCHVEYPETMDDQRQRPREKGLNDPRLGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R  +C TC   + +CPGHFGH+EL+ P+FHIGF+  +  ++ +VC NC KI A+  D K+
Sbjct: 65   RNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKY 124

Query: 122  KQALKIRNPKNRLKKILDACKNKTKCEGG--DEIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
              AL+ R+PK R   I    K+   CE    +E D   ++  +P++ + GGCG  QP++ 
Sbjct: 125  LDALRFRDPKKRFDAIWRLSKDILICEADPPEEDDPFAKESSKPVQGH-GGCGNVQPQVR 183

Query: 180  IEGMKMIAEYKAQRKKN---DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
             EG+ ++  +K  + ++   D++ Q PE    K+ +T +  L + + IS+ED +L+GL+ 
Sbjct: 184  KEGITLMGTWKPSKMRDMMDDNEIQQPE----KKQITPQMALTIFRNISEEDVRLMGLSN 239

Query: 237  KYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERNG 283
             YARP+WMI+ VLP+PPPPV             R  DDLT++LA IIR N+N+ R E+ G
Sbjct: 240  DYARPEWMIITVLPVPPPPVRPSVLVGGSGTGQRGEDDLTYKLAEIIRANQNVTRCEQEG 299

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGK 343
            +P H++ EF  LLQ+H+ATY DN++ G P+A Q+S RP+K+I  RLK KEGR+R NLMGK
Sbjct: 300  SPEHVVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGK 359

Query: 344  RVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKT 403
            RVDFSARTVIT DP +++D++GVP SIA  LTYPE VTPYNI RL +LV+ GP   PG  
Sbjct: 360  RVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNGPDVHPG-- 417

Query: 404  GAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
             A+Y+IR  G+R+DLR+ K     + L+ G+KVERHL DGDF+LFNRQPSLHK S+M HR
Sbjct: 418  -ARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSLHKESMMSHR 476

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L +VP  IVSPQ N P
Sbjct: 477  VRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVSPQRNGP 536

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            +MGIVQDTL G  KI +RD F+ K+  MN+L+W  D+DG +PQP ILKPRP W+GKQ+ +
Sbjct: 537  LMGIVQDTLCGIYKICRRDVFLTKEQVMNVLLWVPDWDGVLPQPAILKPRPRWSGKQMIS 596

Query: 583  LIIPKQINLFRTAAWHADNDKGILTA-----GDTLVRIEKGELLSGTLCKKTLGTSTGSL 637
            +++P  +NL R      D DK  ++       D  V +  GEL+ G   KKT+G S G +
Sbjct: 597  MVLPSGLNLLRI-----DKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVGASGGGI 651

Query: 638  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNN 697
            +H I+ E GPDAA  F    Q +VNYWLL N FSIGIGDTI D +T++ I + +   K  
Sbjct: 652  VHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGDTIPDLETIQKIENAVRVRKEE 711

Query: 698  VKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTA 757
            V ++   A + +LE  PG  + E+FE+KV++ LN ARDEAG++ +KSL +SNN   M  +
Sbjct: 712  VDSITASATENTLEALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARS 771

Query: 758  GSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLT 817
            GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLT
Sbjct: 772  GSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLT 831

Query: 818  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 877
            P EFFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD++QFLYG
Sbjct: 832  PTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIVQFLYG 891

Query: 878  EDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEEN-WNPNYMLQ--EYIDDLKTIKEL 933
            EDG+D   IE+Q +D +K    +F   FR + MD E   +P+ + Q  E   D++  K L
Sbjct: 892  EDGLDGQCIENQRVDVIKCSDEQFRNRFRVDLMDPERLLSPDILEQATEIAGDIEVQKHL 951

Query: 934  RDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPM 993
                D E ++L  DR  L T +    D    LP+N++R++ +A+ TF++     SD+HP 
Sbjct: 952  ----DEEWEQLLKDRAFLRT-VVKEDDEMMQLPINIQRILESAKTTFRIRDGTISDLHPA 1006

Query: 994  EVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEW 1053
            EVV  V +L +RL VV G+D LS EAQ++ATL F   LRS  A +R++ E+ L + AF+ 
Sbjct: 1007 EVVPQVRQLLDRLLVVRGDDALSREAQESATLLFKAQLRSRLAFRRLVVEYSLNKLAFQH 1066

Query: 1054 VIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREI 1113
            V+G IESRF ++   PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI
Sbjct: 1067 VLGAIESRFGKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI 1126

Query: 1114 INVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIE 1173
            +NVA  IKTPS++V+  P     KE AK ++  +E+T+LRSVTE+TE++YDP+   T+IE
Sbjct: 1127 LNVATNIKTPSMTVYQAPECRMNKESAKQLRSIVEHTSLRSVTESTEIYYDPNIQSTVIE 1186

Query: 1174 EDVEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDL 1231
             D++ V+SY+ +P ED+A +  + S WLLRI L+R  ++DK L++  VA KI + +  D+
Sbjct: 1187 NDIDMVESYFIIP-EDVADDSSRQSKWLLRIILSRPKLLDKGLTVQDVATKIKEAYPQDI 1245

Query: 1232 TCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV----- 1286
              IF+D+NAD+ ++RIR + D  PK + +D+  E DV LKK+ES++L  + LRGV     
Sbjct: 1246 AVIFSDNNADEQVVRIRQIQD--PKQDEDDDDTEYDVTLKKLESHLLDTLTLRGVPGIDR 1303

Query: 1287 ------------------------------------NLLAVMCHEDVDARRTTSNHLIEI 1310
                                                 L  V+    +DA RT SN  +EI
Sbjct: 1304 AFINEKSRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRTYSNQFVEI 1363

Query: 1311 IEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG 1370
            +EV GIEA R ALL EL  V++FDGSYVN+RHLA+L D MT RG LMA+TRHGINR DTG
Sbjct: 1364 LEVFGIEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTG 1423

Query: 1371 PMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIE 1430
             +MRCSFEETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+  +YL+  ML   + 
Sbjct: 1424 ALMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQSMLMGVVS 1483

Query: 1431 LQLPSYMEGLE-FGMT---PARSPVSGTPYHDGMMSPGYLFS--PNLRLSPVTDAQFSPY 1484
                    G E  GM     A    SG+P  + M    Y+ S  P+ + SPV  A     
Sbjct: 1484 NNAGLGAMGEEPKGMLSDGAATQYDSGSPMQENM----YISSPDPDSQFSPVRQAGSENT 1539

Query: 1485 VGGMAFSPTSSPGYSPSSP-----GYSPSSP-GYSPTSPGYSPTSPGYSPTSPGYSPTSP 1538
            VG   + P S  G+SP  P     GYSPSSP   SPTSP YSP+S GYSPTSPG S TS 
Sbjct: 1540 VGFADYQPPSYGGFSPHEPRSPGGGYSPSSPFNTSPTSPAYSPSS-GYSPTSPGMSITSS 1598

Query: 1539 TYSPSSPGYSPTSPAYSPTSPSYSPTSPSY----SPTSPSYSPTSPS------------- 1581
             +  SSP +SP SP+++PTSP+YSPTSP Y    SPTSPSYSPTSP              
Sbjct: 1599 RFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTSP 1657

Query: 1582 --------YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP-SYS 1632
                    +SPTSPSYSPTSP+   T    SPT    SPTSP Y+PTSP +SPTSP +YS
Sbjct: 1658 SFSPASPVFSPTSPSYSPTSPALGGTGRHLSPT----SPTSPKYTPTSPGWSPTSPEAYS 1713

Query: 1633 PTSPSY--SPTSPSYSPTSPSYSPTSPSYSPT 1662
            PTSP++  SPTSP   PTSP YSPTSP+++PT
Sbjct: 1714 PTSPNFSGSPTSPG-GPTSPGYSPTSPTFNPT 1744



 Score =  158 bits (399), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 114/237 (48%), Positives = 140/237 (59%), Gaps = 52/237 (21%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSP-SYSPTSPSY 1603
            +SP   A S  +  ++   P      PSY   SP + P SP   YSP+SP + SPTSP+Y
Sbjct: 1528 FSPVRQAGSENTVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1580

Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSY 1659
            SP+S  YSPTSP  S TS  +  +SP++SP SPS++PTSP+YSPTSP Y    SPTSPSY
Sbjct: 1581 SPSS-GYSPTSPGMSITSSRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1638

Query: 1660 SPTSPA---------------------YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
            SPTSP                      +SPTSP YSPTSP+   T    SPTSP+     
Sbjct: 1639 SPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRHLSPTSPT----- 1693

Query: 1699 AKYSPSLAYSPSSPRLSPASP--YSPTSPNY--SPTSSSYSPTSPSYSPSSPTYSPS 1751
                 S  Y+P+SP  SP SP  YSPTSPN+  SPTS    PTSP YSP+SPT++P+
Sbjct: 1694 -----SPKYTPTSPGWSPTSPEAYSPTSPNFSGSPTSPG-GPTSPGYSPTSPTFNPT 1744



 Score =  152 bits (385), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/235 (46%), Positives = 138/235 (58%), Gaps = 47/235 (20%)

Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA--YSPTSP-AYSPTSPAY 1624
            +SP   + S  +  ++   P      PSY   SP + P SP   YSP+SP   SPTSPAY
Sbjct: 1528 FSPVRQAGSENTVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1580

Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY----SPTSPSY 1680
            SP+S  YSPTSP  S TS  +  +SP++SP SPS++PTSPAYSPTSPGY    SPTSPSY
Sbjct: 1581 SPSS-GYSPTSPGMSITSSRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1638

Query: 1681 SPTSP---------------------TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
            SPTSP                      +SPTSPSY+P S    P+L  +         SP
Sbjct: 1639 SPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTS----PALGGTGRH-----LSP 1689

Query: 1720 YSPTSPNYSPTSSSYSPTSP-SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
             SPTSP Y+PTS  +SPTSP +YSP+SP +S S     G  +P YSP+SP ++P+
Sbjct: 1690 TSPTSPKYTPTSPGWSPTSPEAYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFNPT 1744



 Score =  139 bits (349), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/232 (45%), Positives = 141/232 (60%), Gaps = 40/232 (17%)

Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA--YSPTSP-AYSPTSPSY 1631
            +SP   + S  +  ++   P      PSY   SP + P SP   YSP+SP   SPTSP+Y
Sbjct: 1528 FSPVRQAGSENTVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1580

Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY----SPTSPTY 1687
            SP+S  YSPTSP  S TS  +  +SP++SP SP+++PTSP YSPTSP Y    SPTSP+Y
Sbjct: 1581 SPSS-GYSPTSPGMSITSSRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1638

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS----------SSYSPT 1737
            SPTSP ++P S  YSP+      +  +     +SPTSP+YSPTS          S  SPT
Sbjct: 1639 SPTSPGFSPTSPSYSPTSPSFSPASPV-----FSPTSPSYSPTSPALGGTGRHLSPTSPT 1693

Query: 1738 SPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY--SPSAGYSPSAPGYSPSS 1787
            SP Y+P+SP +SP+SP         YSP+SP +  SP++   P++PGYSP+S
Sbjct: 1694 SPKYTPTSPGWSPTSP-------EAYSPTSPNFSGSPTSPGGPTSPGYSPTS 1738



 Score = 83.2 bits (204), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/208 (33%), Positives = 100/208 (48%), Gaps = 66/208 (31%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG--YSPTSP-SYSPTSPTY 1687
            +SP   + S  +  ++   P      PSY   SP + P SPG  YSP+SP + SPTSP Y
Sbjct: 1528 FSPVRQAGSENTVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1580

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY------ 1741
            SP+S               YSP+SP +S  S    +SP +SP S S++PTSP+Y      
Sbjct: 1581 SPSS--------------GYSPTSPGMSITSSRFISSPAFSPASPSFAPTSPAYSPTSPG 1626

Query: 1742 -----SPSSPTYSPSSPYNAGGGNPD-------------YSPSSPQYSPSA--------- 1774
                 SP+SP+YSP+SP  +                   +SP+SP YSP++         
Sbjct: 1627 YGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRH 1686

Query: 1775 ---------GYSPSAPGYSPSSTSQYTP 1793
                      Y+P++PG+SP+S   Y+P
Sbjct: 1687 LSPTSPTSPKYTPTSPGWSPTSPEAYSP 1714


>gi|193700005|ref|XP_001943054.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
            [Acyrthosiphon pisum]
          Length = 1862

 Score = 1691 bits (4380), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 888/1655 (53%), Positives = 1136/1655 (68%), Gaps = 110/1655 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILS DE R+MSV +  I   ET E G+PK GGL DPR G IDR  +
Sbjct: 6    SKAPIRSVKRVQFGILSADECRRMSVTEGGIRFAETMEGGRPKLGGLMDPRQGVIDRFSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM EC GHFGH+ELAKP+FH+GF+   + I+R VCF CSK+L      K K+  
Sbjct: 66   CQTCAGNMTECCGHFGHIELAKPVFHVGFVTKAIKILRCVCFYCSKLLVSPTHPKVKEIV 125

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP----LKKNKGGCGAQQPKLT 179
            +K +   + RL  I D CK K  CEGGDE+D+   +  +P     K+  GGCG  QP + 
Sbjct: 126  MKSKGQQRKRLAFIYDLCKGKNICEGGDELDINKDNVNDPNMPPKKQGHGGCGRYQPTIR 185

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
              G+ + AE+K     N+D +      E+K  LTAERV  +LK I+DE+  ++G++PK+A
Sbjct: 186  RVGLDLTAEWK---HVNEDSQ------EKKIPLTAERVHEILKHITDEEVVIMGMDPKFA 236

Query: 240  RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RPDWM+L VLP+PP PVRP+          DDLTH+L+ II+ N  L R E++GA  HII
Sbjct: 237  RPDWMVLTVLPVPPLPVRPAIVMFGSMRNQDDLTHKLSDIIKCNNELIRNEQSGAATHII 296

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            +E  ++LQ+H+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSA
Sbjct: 297  AENIRMLQYHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSA 356

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVITPDP + ID++GVP +IA N+T+PE VTP+NI+ + ELV  G    PG   AKYII
Sbjct: 357  RTVITPDPNLRIDEVGVPRTIAQNMTFPEIVTPFNIDHMLELVRRGNSQYPG---AKYII 413

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+S
Sbjct: 414  RDNGERIDLRFHPKPSDLHLQCGYKVERHIKDGDLVVFNRQPTLHKMSMMGHRVRVLPWS 473

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQD
Sbjct: 474  TFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQD 533

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK+TKRD F+EK+  MN+LM    +DGK+P P ILKP+P+WTGKQ+F+LIIP  +
Sbjct: 534  TLTAIRKMTKRDVFLEKEQMMNLLMHLPIWDGKMPTPCILKPKPMWTGKQLFSLIIPGNV 593

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            NL RT + H D  D G    ++ GDT V +E GEL+ G LCK TLGTS GSL+H+ + E+
Sbjct: 594  NLIRTHSTHPDEEDNGPYKWISPGDTKVMVEHGELVMGILCKSTLGTSAGSLLHICFLEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A
Sbjct: 654  GHEVCGRFYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +G+KGS IN
Sbjct: 714  HNMDLEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGAKGSNIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHA
Sbjct: 774  ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    
Sbjct: 834  MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLSGEA 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E Q++ +++    +F+  F+F++  E        ++ + DL    +     + E ++L 
Sbjct: 894  VEFQSIATIEPSHKKFEAEFKFDVSNERHMRKIFNEDVLKDLTGSNDSVTELEREWEQLT 953

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L  EI  SG+S   LP NLKR+IWN QK F ++ R  +D++P++V+  V +L ++
Sbjct: 954  TDRDTL-REIFPSGESKVVLPCNLKRMIWNVQKIFHINKRGQTDLNPVKVINGVKELLDK 1012

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
              +V G D LS +A  NATL F  L+RST  +K V +  RL+ EAFEW+IGEIE+RF Q+
Sbjct: 1013 CVIVAGGDELSKKANHNATLLFQCLVRSTLCTKLVSERFRLSSEAFEWLIGEIENRFKQA 1072

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
               PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL
Sbjct: 1073 QAQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSL 1132

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEM
Sbjct: 1133 TVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIREDQEFVNVYYEM 1192

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PD D  P +ISPWLLRIEL+R+ M DKKL+M A++EKIN  F DDL CIFNDDNADKLIL
Sbjct: 1193 PDFD--PSRISPWLLRIELDRKRMTDKKLTMEAISEKINAGFGDDLNCIFNDDNADKLIL 1250

Query: 1246 RIRIMNDEAPKGELND-----ESAEDDVFLKKIESNMLTEMALRGV-------------- 1286
            RIRIMN E  K    D     +  EDD+FL+ IE+NML++M L+G+              
Sbjct: 1251 RIRIMNGEDGKMNGGDDEDTADKMEDDMFLRCIEANMLSDMTLQGIEAIAKVYMHLPQTD 1310

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                      +L+ V+   DVD  RT SN + EI  VLGIEAVR
Sbjct: 1311 AKKRIIITDTGEFKAIADWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVR 1370

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
            +++  E+  V++F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEET
Sbjct: 1371 KSVEKEMNTVLNFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEET 1430

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS----- 1435
            VD+LLDAA  AE D +RGV+ENI++GQL  +GTG   L L+ E  K+ IE+ + +     
Sbjct: 1431 VDVLLDAAAHAEVDPMRGVSENIIMGQLPRMGTGCFDLLLDSEKAKDGIEIPMDNGYMGM 1490

Query: 1436 -YMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS 1494
                      TP+ SP   TP+ D   +P Y  S     S   +A  +P  GG  FSP  
Sbjct: 1491 GAGGMFMGAGTPSMSPAM-TPW-DQTSTPVYQNS----WSSSLEAGMTP--GGPGFSPAG 1542

Query: 1495 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGY--SPTSPGYSPTSPTYS-PSSPGYSPTS 1551
            S   S +SP +  S  G +P SPG    SPG   SP  P  +  SP Y+ PSSP +   S
Sbjct: 1543 SSEASGTSPFWMTS--GGTPGSPG----SPGMATSPYVPSPNSMSPNYNYPSSPQFGSMS 1596

Query: 1552 PAYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYS 1583
            P+ +PT  +YSPTSP YS T   +P YS  SP+Y+
Sbjct: 1597 PSMTPT--NYSPTSPQYSATQQNTPKYSSMSPNYN 1629



 Score = 60.5 bits (145), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 71/133 (53%), Gaps = 13/133 (9%)

Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPAY--SPTS 1614
            +PS SP    +  TS      S S S      +P  P +SP   S  S TSP +  S  +
Sbjct: 1501 TPSMSPAMTPWDQTSTPVYQNSWS-SSLEAGMTPGGPGFSPAGSSEASGTSPFWMTSGGT 1559

Query: 1615 PAYSPTSP--AYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPAYSPT-- 1669
            P  SP SP  A SP  PS +  SP+Y+ P+SP +   SPS +PT  +YSPTSP YS T  
Sbjct: 1560 PG-SPGSPGMATSPYVPSPNSMSPNYNYPSSPQFGSMSPSMTPT--NYSPTSPQYSATQQ 1616

Query: 1670 -SPGYSPTSPSYS 1681
             +P YS  SP+Y+
Sbjct: 1617 NTPKYSSMSPNYN 1629


>gi|345565425|gb|EGX48374.1| hypothetical protein AOL_s00080g3 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1760

 Score = 1690 bits (4376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 904/1785 (50%), Positives = 1182/1785 (66%), Gaps = 182/1785 (10%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGK--PKPGGLSDPRLGTIDR 62
            FP+S A +  ++ VQFG+LSP+EI+ MSV  IE  ET +  K  P+  GL+DP +G+IDR
Sbjct: 7    FPHSSAPLRTIQEVQFGLLSPEEIKGMSVCHIEFPETMDESKLRPRERGLNDPHMGSIDR 66

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADED----- 117
              KC TC  NM+ECPGHFGH+ELAKP+FHIGF+  +  ++ +VCFNC KIL DE+     
Sbjct: 67   SFKCATCDENMSECPGHFGHIELAKPVFHIGFITKIKKVLETVCFNCGKILLDENTLANI 126

Query: 118  ----------DHKFKQALKIRNPKNRLKKILDACKNKTKCE-----GGDEIDVPGQDGEE 162
                      + +F  A++IR+PK R   +   C+ K  CE     G +E       GEE
Sbjct: 127  CILRCVISKSNPQFVDAMRIRDPKARFNAVWRICRAKNVCESDANEGEEEGPNDALPGEE 186

Query: 163  PLKKNK-GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVL 221
              +K+K GGCG  QP +  +G+K+I  +K  +   D+ E+ P+P +R   LT + VL + 
Sbjct: 187  KARKHKHGGCGNAQPTIRKDGLKLIGTWKPSK---DEDEENPQPTKR--NLTPQMVLNIF 241

Query: 222  KRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS--------------DDLTHQLA 267
            K I+D++   +GLN  YARP+WM++ VL +PPPPVRPS              DDLT +L 
Sbjct: 242  KHITDDEITKMGLNKDYARPEWMVITVLAVPPPPVRPSISVDGMGGGGMRGEDDLTFKLG 301

Query: 268  MIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICS 327
             II+ N NL+R E+ G+PAH+++EF  LLQFH+AT+ DN++ GQP+A Q+SGRPIKSI +
Sbjct: 302  DIIKANNNLQRCEQEGSPAHVVNEFESLLQFHVATFMDNDIAGQPQAVQKSGRPIKSIRA 361

Query: 328  RLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIER 387
            RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP S A  LTYPETVTPYNI++
Sbjct: 362  RLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSTARILTYPETVTPYNIKK 421

Query: 388  LKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLF 447
            L  LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KVERH+ DGDFV+F
Sbjct: 422  LSALVKNGPNEHPG---AKYVIRDTGERIDLRHHKRAGEIALQYGWKVERHIVDGDFVIF 478

Query: 448  NRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLEL 507
            NRQPSLHK S+MGHR++++PYSTFRLNLSVTSPYNADFDGDEMNMHVPQS ETRAEV +L
Sbjct: 479  NRQPSLHKESMMGHRVRVLPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEVSQL 538

Query: 508  MMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPT 567
             MVP  IVSPQ N P+MGIVQDTL G  K+ +RD F+++D  MN+L+W  ++DG  P P 
Sbjct: 539  CMVPLQIVSPQRNGPLMGIVQDTLCGVYKLCRRDVFLDRDQLMNVLLWVPEWDGTFPPPA 598

Query: 568  ILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCK 627
            I+KP P WTGKQ+ +++IPK INL +       + +G+    DT + +  GEL+ G   K
Sbjct: 599  IVKPSPRWTGKQLISMVIPKGINLVKP------DKEGMSPLADTGLCVTDGELMFGLFSK 652

Query: 628  KTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETI 687
            K++G S G +IH I+ E G      F   TQ +VNYWLL N FSIGIGDTI DA T++ I
Sbjct: 653  KSVGASQGGMIHTIYNEKGWQTCMGFFNGTQRVVNYWLLHNGFSIGIGDTIPDAATIQKI 712

Query: 688  NDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSE 747
             D +++ K  V  + KQAQD  LE  PG  + E+FENKV++ LN ARD+AGS+ +KSL +
Sbjct: 713  QDIVTQRKAEVDEVTKQAQDNVLEALPGMNIRETFENKVSRSLNLARDDAGSATEKSLKD 772

Query: 748  SNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 807
             NN   M  +GSKGS INISQM+A VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGF
Sbjct: 773  LNNAIQMARSGSKGSNINISQMSAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGF 832

Query: 808  VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNS 867
            VENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNS
Sbjct: 833  VENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMCKYDGTVRNS 892

Query: 868  LGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDL 927
            LGD+IQF YGEDG+D   +E Q +D +     + +K FR ++ + + + +    E   ++
Sbjct: 893  LGDIIQFCYGEDGLDGQHMELQKVDIITCSNKDLEKKFRVDLMDPSLSLSPEHLEVASEI 952

Query: 928  KTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP 987
            +   E++ V D E +++   R +   E+A   D S  LP+N+ R++ NA+  F++     
Sbjct: 953  QGDAEIQAVLDEEWERVLHAR-ETIREVAKDADDSMHLPINVLRILENAKSIFRIKKNGR 1011

Query: 988  SDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLT 1047
            SD+ P+E V  + +L + L V+ G DP+S+EAQ NATL F   L+   A KR++ E+RLT
Sbjct: 1012 SDLEPVETVHKIKQLLDELVVIRGSDPISIEAQYNATLLFRSHLQGRLAFKRLVLEYRLT 1071

Query: 1048 REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGV 1107
            + A +WVIGEI++RF ++   PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGV
Sbjct: 1072 KVALDWVIGEIKARFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGV 1131

Query: 1108 PRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDP 1167
            PRL+EI+NVAK IKTPSL+V+ +P     +E+AK ++ A+E+TTLRSV EATE+++DP+P
Sbjct: 1132 PRLKEILNVAKNIKTPSLTVYQEPEHMYNREKAKLLRSAVEHTTLRSVCEATEIYFDPEP 1191

Query: 1168 MGTIIEEDVEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQ 1225
              T+IE D + V++++ MPD  +     + SPW+LRI ++R  M+DK L +  +A KI +
Sbjct: 1192 KDTVIEADKDIVEAFFFMPDAAVEQHISRHSPWVLRIIIDRRKMIDKGLRIEDIAGKIME 1251

Query: 1226 EFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG 1285
             +D DL  IF+D+NAD+L++R R++ D   K     E  E+D+ LK+ E+++L  + LRG
Sbjct: 1252 TYDRDLFVIFSDNNADELVIRCRLLIDREDK-----EGLEEDLMLKRFEAHVLDALTLRG 1306

Query: 1286 V-----------------------------------------NLLAVMCHEDVDARRTTS 1304
            V                                         NL AV+  + VD  R  S
Sbjct: 1307 VQGISRAFINEKTRVKVDNNGGLVMNRSEPGCIEYVLDTSGTNLAAVLTIDGVDPTRAYS 1366

Query: 1305 NHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGI 1364
            N+ +E++EV GIEA R ALL EL  V++FDGSYVN RHL +LCD MT RGHLMAITRHGI
Sbjct: 1367 NNFVEVLEVFGIEATRGALLKELTQVLAFDGSYVNQRHLTLLCDVMTSRGHLMAITRHGI 1426

Query: 1365 NRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEM 1424
            NR DTG +MRCSFEETV+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  +YL++ M
Sbjct: 1427 NRADTGALMRCSFEETVEILLEAAAAGELDDCRGISENVMLGQLAPMGTGEFDVYLDEGM 1486

Query: 1425 LKNAIELQLPSYMEGLEFGMTPARSPVSG--TPYHDGMMSPG--YLFSPNLRLSPVTDAQ 1480
            L    +L   +   G  F         SG  TPY  G  SP   YL +     SP  +  
Sbjct: 1487 LS---QLITDNTRTGAPFANKADNGFDSGQMTPYDLGSGSPDPMYLGAA----SPGFNVS 1539

Query: 1481 FSPYV-GGMAFSPTSSP------GYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGY 1533
            FSP V  G  + P S P      G +P SP +  +SPGYSP SP YSPTSP  + TSPG+
Sbjct: 1540 FSPMVQSGSDYEPPSYPMPEPFGGTTPRSP-FGMASPGYSPASPNYSPTSPRMA-TSPGF 1597

Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPS--------------------------------- 1560
            S     +SP+SP YSPTSPAYSPTSPS                                 
Sbjct: 1598 S-GGLGFSPASPAYSPTSPAYSPTSPSMAGGAYGTSPTSPSYSPTSPSYSPTSPSFSPTS 1656

Query: 1561 ---------YSPTSPSYSPTSP---------SYSPTSPSYSPTSPSYSPTSPSYSPTSP- 1601
                     YSPTSP YSPTSP         ++SPTSP    TSPSYSPTSP YSPTSP 
Sbjct: 1657 PSYSPTSPAYSPTSPQYSPTSPQFNGGGGTTNFSPTSP----TSPSYSPTSPQYSPTSPN 1712

Query: 1602 SYSPTSPAYS-PTSPA----YSPTSPAYSPTSPSYSPTSPSYSPT 1641
            +YSPTSP ++ P SP     YS +SP +SP+SP +SP SP   P 
Sbjct: 1713 AYSPTSPQFATPGSPGGAAPYSISSPIWSPSSPRFSPNSPRDPPA 1757



 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/212 (39%), Positives = 97/212 (45%), Gaps = 68/212 (32%)

Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPA--YSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1652
            S+SP   S S   P   P    +  T+P   +   SP YSP SP+YSPTSP  + TSP +
Sbjct: 1539 SFSPMVQSGSDYEPPSYPMPEPFGGTTPRSPFGMASPGYSPASPNYSPTSPRMA-TSPGF 1597

Query: 1653 SPTSPSYSPTSPAYSPTSPGYSPTSPS--------------------------------- 1679
            S     +SP SPAYSPTSP YSPTSPS                                 
Sbjct: 1598 S-GGLGFSPASPAYSPTSPAYSPTSPSMAGGAYGTSPTSPSYSPTSPSYSPTSPSFSPTS 1656

Query: 1680 ---------YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPT 1730
                     YSPTSP YSPTSP +N      +               SP SPTSP+YS  
Sbjct: 1657 PSYSPTSPAYSPTSPQYSPTSPQFNGGGGTTN--------------FSPTSPTSPSYS-- 1700

Query: 1731 SSSYSPTSPSYSPSSP-TYSPSSPYNAGGGNP 1761
                 PTSP YSP+SP  YSP+SP  A  G+P
Sbjct: 1701 -----PTSPQYSPTSPNAYSPTSPQFATPGSP 1727



 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/221 (38%), Positives = 110/221 (49%), Gaps = 47/221 (21%)

Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS--YSPTSPSY 1652
            S SP        SP ++ +   +SP   + S   P   P    +  T+P   +   SP Y
Sbjct: 1521 SGSPDPMYLGAASPGFNVS---FSPMVQSGSDYEPPSYPMPEPFGGTTPRSPFGMASPGY 1577

Query: 1653 SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA------ 1706
            SP SP+YSPTSP  + TSPG+S     +SP SP YSPTSP+Y+P     SPS+A      
Sbjct: 1578 SPASPNYSPTSPRMA-TSPGFS-GGLGFSPASPAYSPTSPAYSPT----SPSMAGGAYGT 1631

Query: 1707 --------------YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSS 1752
                             S      +  YSPTSP YSPTS  YSPTSP             
Sbjct: 1632 SPTSPSYSPTSPSYSPTSPSFSPTSPSYSPTSPAYSPTSPQYSPTSPQ------------ 1679

Query: 1753 PYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
             +N GGG  ++SP+SP  SPS  YSP++P YSP+S + Y+P
Sbjct: 1680 -FNGGGGTTNFSPTSPT-SPS--YSPTSPQYSPTSPNAYSP 1716



 Score = 52.0 bits (123), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 46/90 (51%), Gaps = 25/90 (27%)

Query: 1477 TDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSP-GYSPTSPGYS-PTSPG-- 1532
            T  QF+   G   FSPTS     P+SP YSP+SP YSPTSP  YSPTSP ++ P SPG  
Sbjct: 1676 TSPQFNGGGGTTNFSPTS-----PTSPSYSPTSPQYSPTSPNAYSPTSPQFATPGSPGGA 1730

Query: 1533 ----------------YSPTSPTYSPSSPG 1546
                            +SP SP   P+  G
Sbjct: 1731 APYSISSPIWSPSSPRFSPNSPRDPPARSG 1760


>gi|315056155|ref|XP_003177452.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum CBS
            118893]
 gi|311339298|gb|EFQ98500.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum CBS
            118893]
          Length = 1748

 Score = 1689 bits (4374), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 914/1775 (51%), Positives = 1198/1775 (67%), Gaps = 145/1775 (8%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTI 60
             RFPYS A++  ++ +QFG+LSP+EI++MSV  +E+ ET   +R +P+  GL+DPRLGTI
Sbjct: 4    VRFPYSKAQLRTIKEIQFGLLSPEEIKRMSVCHVEYPETMDDQRQRPREKGLNDPRLGTI 63

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DR  +C TC   + +CPGHFGH+EL+ P+FHIGF+  +  ++ +VC NC KI A+  D K
Sbjct: 64   DRNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQK 123

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGG--DEIDVPGQDGEEPLKKNKGGCGAQQPKL 178
            +  AL+ R+PK R   I    K+   CE    ++ D   ++  +P++ + GGCG  QP++
Sbjct: 124  YLDALRFRDPKKRFDAIWRLSKDILVCEADPPEDDDPFAKESSKPVQGH-GGCGNVQPQV 182

Query: 179  TIEGMKMIAEYKAQRKKN---DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
              EG+ ++  +K  + ++   D++ Q PE    K+ +T +  L + + IS+ED +L+GL+
Sbjct: 183  RKEGITLMGTWKPSKMRDMMDDNEIQQPE----KKQITPQMALTIFRNISEEDVRLMGLS 238

Query: 236  PKYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WM++ VLP+PPPPV             R  DDLT++LA IIR N+N+ R E+ 
Sbjct: 239  NDYARPEWMVITVLPVPPPPVRPSVLVGGSGTGQRGEDDLTYKLAEIIRANQNVTRCEQE 298

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P H++ EF  LLQ+H+ATY DN++ G P+A Q+S RP+K+I  RLK KEGR+R NLMG
Sbjct: 299  GSPEHVVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMG 358

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT DP +++D++GVP SIA  LTYPE VTPYNI RL +LV+ GP   PG 
Sbjct: 359  KRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNGPDVHPG- 417

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
              A+Y+IR  G+R+DLR+ K     + L+ G+KVERHL DGDF+LFNRQPSLHK S+M H
Sbjct: 418  --ARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSLHKESMMSH 475

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
            R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L +VP  IVSPQ N 
Sbjct: 476  RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVSPQRNG 535

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
            P+MGIVQDTL G  KI +RD F+ K+  MN+L+W  D+DG +PQP ILKPRP W+GKQ+ 
Sbjct: 536  PLMGIVQDTLCGIYKICRRDVFLTKEQVMNLLLWVPDWDGVLPQPAILKPRPRWSGKQMI 595

Query: 582  NLIIPKQINLFRTAAWHADNDKGILTA-----GDTLVRIEKGELLSGTLCKKTLGTSTGS 636
            ++++P  +NL R      D DK  ++       D  V +  GEL+ G   KKT+G + G 
Sbjct: 596  SMVLPSGLNLLRI-----DKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVGATGGG 650

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            ++H I+ E GPD A  F    Q +VNYWLL N FSIGIGDTI D  T++ I + +   K 
Sbjct: 651  VVHTIFNEYGPDTAMSFFNGAQRVVNYWLLHNGFSIGIGDTIPDLATIQKIENAVRVRKE 710

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
             V ++   A + +LE  PG  + E+FE+KV++ LN ARDEAG++ +KSL +SNN   M  
Sbjct: 711  EVDSITASATENTLEALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMAR 770

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
            +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGL
Sbjct: 771  SGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGL 830

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
            TP EFFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD++QFLY
Sbjct: 831  TPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIVQFLY 890

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEEN-WNPNYMLQ--EYIDDLKTIKE 932
            GEDG+D   IE+Q +D +K    +F   FR + MD E   +P+ + Q  E   D+   K 
Sbjct: 891  GEDGLDGQCIENQRVDIIKCSDEQFRNRFRVDLMDPERLLSPDILEQATEIAGDIAVQKH 950

Query: 933  LRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHP 992
            L    D E ++L  DR  L T +    D    LP+N++R++ +A+ TF++     SD+HP
Sbjct: 951  L----DEEWEQLLKDRAFLRT-VVKEDDEMMQLPINIQRILESAKTTFRIRDGTISDLHP 1005

Query: 993  MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1052
             EVV  V +L +RL VV G+DPLS EAQ++ATL F   LRS  A +R++ E+ L + AF+
Sbjct: 1006 AEVVPQVRQLLDRLLVVRGDDPLSREAQESATLLFKAQLRSRLAFRRLVVEYSLNKLAFQ 1065

Query: 1053 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1112
             V+G IESRF ++   PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+E
Sbjct: 1066 HVLGAIESRFGKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKE 1125

Query: 1113 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1172
            I+NVA  IKTPS++V+  P     KE AK ++  +E+T+LRSVTE+TE++YDP+   T+I
Sbjct: 1126 ILNVATNIKTPSMTVYQAPERRMNKESAKQLRSIVEHTSLRSVTESTEIYYDPNIQSTVI 1185

Query: 1173 EEDVEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDD 1230
            E D++ V+SY+ +P ED+A +  + S WLLRI L+R  ++DK L++  VA KI + +  D
Sbjct: 1186 ENDIDMVESYFIIP-EDVADDSSRQSKWLLRIILSRPKLLDKGLTVQDVATKIKEAYPQD 1244

Query: 1231 LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---- 1286
            +  IF+D+NAD+ ++RIR + D  PK + +D+  E DV LKK+ES++L  + LRGV    
Sbjct: 1245 IAVIFSDNNADEQVVRIRQIQD--PKQDEDDDDTEYDVTLKKLESHLLDTLTLRGVPGID 1302

Query: 1287 -------------------------------------NLLAVMCHEDVDARRTTSNHLIE 1309
                                                  L  V+    +DA RT SN  +E
Sbjct: 1303 RAFINEKSRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRTYSNQFVE 1362

Query: 1310 IIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1369
            I+EV GIEA R ALL EL  V++FDGSYVN+RHLA+L D MT RG LMA+TRHGINR DT
Sbjct: 1363 ILEVFGIEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADT 1422

Query: 1370 GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI 1429
            G +MRCSFEETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+  +YL+  ML   +
Sbjct: 1423 GALMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQSMLMGVV 1482

Query: 1430 ELQLPSYMEGLE-FGMT---PARSPVSGTPYHDGMMSPGYLFS--PNLRLSPVTDAQFSP 1483
                     G E  GM     A    SG+P  + M    Y+ S  P+ + SPV  A    
Sbjct: 1483 SSNAGLGAMGEEPKGMLSDGAATQYDSGSPMQENM----YISSPDPDSQFSPVRQAGSEN 1538

Query: 1484 YVGGMAFSPTSSPGYSPSSP-----GYSPSSP-GYSPTSPGYSPTSPGYSPTSPGYSPTS 1537
             VG   + P S  G+SP  P     GYSPSSP   SPTSP YSP+S GYSPTSPG S TS
Sbjct: 1539 AVGFADYQPPSYGGFSPHEPRSPGGGYSPSSPFNTSPTSPAYSPSS-GYSPTSPGMSITS 1597

Query: 1538 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY----SPTSPSYSPTSPS------------ 1581
            P +  SSP +SP SP+++PTSP+YSPTSP Y    SPTSPSYSPTSP             
Sbjct: 1598 PRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTS 1656

Query: 1582 ---------YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP-SY 1631
                     +SPTSPSYSPTSP+   T    SPT    SPTSP Y+PTSP +SPTSP +Y
Sbjct: 1657 PSFSPASPVFSPTSPSYSPTSPALGGTGRHLSPT----SPTSPKYTPTSPGWSPTSPEAY 1712

Query: 1632 SPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSP 1664
            SPTSP++  SPTSP   PTSP YSPTSP+++PTSP
Sbjct: 1713 SPTSPNFSGSPTSPG-GPTSPGYSPTSPTFNPTSP 1746



 Score =  164 bits (414), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 117/239 (48%), Positives = 143/239 (59%), Gaps = 52/239 (21%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSP-SYSPTSPSY 1603
            +SP   A S  +  ++   P      PSY   SP + P SP   YSP+SP + SPTSP+Y
Sbjct: 1528 FSPVRQAGSENAVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1580

Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSY 1659
            SP+S  YSPTSP  S TSP +  +SP++SP SPS++PTSP+YSPTSP Y    SPTSPSY
Sbjct: 1581 SPSS-GYSPTSPGMSITSPRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1638

Query: 1660 SPTSPA---------------------YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
            SPTSP                      +SPTSP YSPTSP+   T    SPTSP+     
Sbjct: 1639 SPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRHLSPTSPT----- 1693

Query: 1699 AKYSPSLAYSPSSPRLSPASP--YSPTSPNY--SPTSSSYSPTSPSYSPSSPTYSPSSP 1753
                 S  Y+P+SP  SP SP  YSPTSPN+  SPTS    PTSP YSP+SPT++P+SP
Sbjct: 1694 -----SPKYTPTSPGWSPTSPEAYSPTSPNFSGSPTSPG-GPTSPGYSPTSPTFNPTSP 1746



 Score =  142 bits (357), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/235 (45%), Positives = 144/235 (61%), Gaps = 33/235 (14%)

Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA--YSPTSP-AYSPTSPSY 1631
            +SP   + S  +  ++   P      PSY   SP + P SP   YSP+SP   SPTSP+Y
Sbjct: 1528 FSPVRQAGSENAVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1580

Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY----SPTSPTY 1687
            SP+S  YSPTSP  S TSP +  +SP++SP SP+++PTSP YSPTSP Y    SPTSP+Y
Sbjct: 1581 SPSS-GYSPTSPGMSITSPRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1638

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS----------SSYSPT 1737
            SPTSP ++P S  YSP+      +  +     +SPTSP+YSPTS          S  SPT
Sbjct: 1639 SPTSPGFSPTSPSYSPTSPSFSPASPV-----FSPTSPSYSPTSPALGGTGRHLSPTSPT 1693

Query: 1738 SPSYSPSSPTYSPSSPYNAGGGNPDY--SPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
            SP Y+P+SP +SP+SP      +P++  SP+SP    S GYSP++P ++P+S  Q
Sbjct: 1694 SPKYTPTSPGWSPTSPEAYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFNPTSPRQ 1748



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 101/208 (48%), Gaps = 66/208 (31%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG--YSPTSP-SYSPTSPTY 1687
            +SP   + S  +  ++   P      PSY   SP + P SPG  YSP+SP + SPTSP Y
Sbjct: 1528 FSPVRQAGSENAVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1580

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY------ 1741
            SP+S               YSP+SP +S  SP   +SP +SP S S++PTSP+Y      
Sbjct: 1581 SPSS--------------GYSPTSPGMSITSPRFISSPAFSPASPSFAPTSPAYSPTSPG 1626

Query: 1742 -----SPSSPTYSPSSPYNAGGGNPD-------------YSPSSPQYSPSA--------- 1774
                 SP+SP+YSP+SP  +                   +SP+SP YSP++         
Sbjct: 1627 YGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRH 1686

Query: 1775 ---------GYSPSAPGYSPSSTSQYTP 1793
                      Y+P++PG+SP+S   Y+P
Sbjct: 1687 LSPTSPTSPKYTPTSPGWSPTSPEAYSP 1714


>gi|453086034|gb|EMF14076.1| DNA-dependent RNA polymerase II largest subunit [Mycosphaerella
            populorum SO2202]
          Length = 1780

 Score = 1687 bits (4369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 893/1815 (49%), Positives = 1188/1815 (65%), Gaps = 169/1815 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            F +S A +  V+ +QFG+ SP+EI+ MSV  IE+ ET   +R +P+  GL+DP+LGTIDR
Sbjct: 4    FAHSDAPLKTVKEIQFGLFSPEEIKNMSVCHIEYPETMDEQRNRPRERGLNDPKLGTIDR 63

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
               C TC  +  ECPGHFGH+ELA P++H+G++  +  I+ SVC NC K+L DE +  F 
Sbjct: 64   SQMCATCGESQQECPGHFGHIELAVPVYHVGYITKIKKILESVCNNCGKLLEDERNPTFA 123

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK---KNKGGCGAQQPKLT 179
             A+K+R+PK R + +   CK K  C+  +  D  GQ G++P K      GGCG  QP + 
Sbjct: 124  LAIKLRDPKRRFEAVTRLCKPKMDCQTDEPSDEDGQFGDDPKKPKLAGHGGCGNMQPTIR 183

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
             +G+K+I  +K  + ++  ++  PE    K+ +T    L V + ISDED   LGLN  YA
Sbjct: 184  KDGLKLIGTWKMPKNEDTGEDNSPE----KKPITPTDALRVFRNISDEDLYRLGLNVDYA 239

Query: 240  RPDWMILQVLPIPPPPVRPS-------------DDLTHQLAMIIRHNENLRRQERNGAPA 286
            RP+WMIL VLP+PPP VRPS             DDLT++L+ IIR N N+RR E+ G+PA
Sbjct: 240  RPEWMILTVLPVPPPAVRPSISVDGTSQGMRSEDDLTYKLSDIIRANSNVRRAEQEGSPA 299

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            HI  EF QLLQ+H+ATY DN++ G P++ Q+SGRP+K+I +RLK+KEGR+RGNLMGKRVD
Sbjct: 300  HITEEFTQLLQYHVATYMDNDIAGLPKSIQKSGRPLKAIRARLKSKEGRLRGNLMGKRVD 359

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP +++DQ+GVP S A  LT+PE VTPYNI +L ELV  GP   PG   AK
Sbjct: 360  FSARTVITGDPNLDLDQVGVPRSTARVLTFPERVTPYNIHKLSELVRNGPSEHPG---AK 416

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            +IIR+DG R+DLRY K++ +  L+ G+ VERH+ DGD+++FNRQPSLHK S+MGHR+K+M
Sbjct: 417  HIIREDGSRIDLRYHKRAGEIQLQNGWIVERHIVDGDYIIFNRQPSLHKESMMGHRVKVM 476

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            PYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETR+EV  L  VP  IVSPQ N P+MGI
Sbjct: 477  PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSHETRSEVANLCAVPHNIVSPQKNGPLMGI 536

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDT+ G   +TKRDT ++ +  MNI++W   +DG VPQP ILKP P WTGKQ+ ++ +P
Sbjct: 537  VQDTMAGIYMMTKRDTMMDYEQVMNIMLWVPGWDGIVPQPAILKPVPRWTGKQIMSMGLP 596

Query: 587  KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
              +N+ +      D D   L   D+ V ++ GEL+ G L KK +G S G ++H+I+ + G
Sbjct: 597  SGLNIMKLGD---DEDHISLAEADSSVLVQNGELVWGRLTKKLVGASGGGIVHLIFNDRG 653

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             DA  +F    Q +V YWLL N FS+GIGDTI DA  +  I   I K K  V   +++ Q
Sbjct: 654  TDATVEFFNAAQRIVCYWLLHNGFSVGIGDTIPDADMVLAIEQNIVKEKATVDGYMREVQ 713

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
               +E  PG T+ E+FE++    L+ AR+ AG +A K +   NN+  MV  GSKGS  N+
Sbjct: 714  SDEMEALPGMTIRETFESQTKAALDNARNNAGDAAYKGMKPCNNVGVMVKGGSKGSTTNV 773

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQMTA VGQQ++EGKR+PFGF DR LPHF KDDY P SRGFVENSYLRGLTPQEFFFHAM
Sbjct: 774  SQMTAAVGQQSLEGKRLPFGFKDRVLPHFPKDDYSPASRGFVENSYLRGLTPQEFFFHAM 833

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREGLIDTAVKT+ETGYIQRRLVKA+E+IM+KYDGTVRNSLGD++QF+YGEDG+D+ +I
Sbjct: 834  GGREGLIDTAVKTAETGYIQRRLVKALEEIMIKYDGTVRNSLGDILQFVYGEDGLDATFI 893

Query: 887  ESQTLDSLKMKKSEFDKAFRFEM-----DEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
            E Q L  +K   S FDK ++ ++      ++  + N +  E   +L+   E++++FD E 
Sbjct: 894  EGQALSIIKQSHSAFDKKYKIDVINPSSKDQTLSSNVL--EMAGELQGDVEVQELFDQEY 951

Query: 942  QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
            + ++ DR ++   +    D  + LP+N+ R+I NA+  FK+     SD+ P + +  V  
Sbjct: 952  EAIKNDRIKIRQGLDDPSDQRF-LPLNVSRMIQNARDKFKITDNSKSDLDPRDAIPKVAA 1010

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L +RLK++ G+D L+ EA  NATL    L RS  A KRV+ E +L++ AF+ ++G+IE+R
Sbjct: 1011 LLDRLKIIRGDDALTREADVNATLLCKALFRSRLAFKRVVNEDKLSKLAFDNILGDIENR 1070

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            FL++LV+PGEM+G +AAQSIGEPATQMTLNTFH AGV+AK  T GVPRL+EI+NVA  IK
Sbjct: 1071 FLRALVSPGEMVGVLAAQSIGEPATQMTLNTFHLAGVTAKTTTKGVPRLKEILNVADNIK 1130

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TP++ VF +P   + +E AK ++  +E+T+LR VT+A E++YDPD   T+IEED + V+S
Sbjct: 1131 TPNMRVFQEPHATTKQESAKLLRSKVEFTSLRGVTDAAEIYYDPDVQSTVIEEDRDMVES 1190

Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            Y+ +P+E   P+  S W+LR  L R  ++DK L++  VAEKI + +  D+  IF+DDN+D
Sbjct: 1191 YFIIPEEGENPDAQSKWMLRFVLGRRQLLDKGLTVTNVAEKIRETYPKDVAVIFSDDNSD 1250

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            ++++R+R+ N +A K E   ES+EDD  LK++  +ML  + LRGV               
Sbjct: 1251 EMVVRVRMTN-QADKEEELGESSEDDT-LKQLSEHMLDNVVLRGVQGVRRVFVSKDLSMI 1308

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                      NL  V+  E VD+ RTT NH    + V GIEAVR
Sbjct: 1309 EEADGKLVKSKNDKACEEWYLDTDGINLKDVLAVEGVDSTRTTCNHFQSTMRVFGIEAVR 1368

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             +L+ EL+ V++ DGSYVN+RH+AILCD M  RG LMA+TRHGINR DTG +MRCSFEET
Sbjct: 1369 ASLMRELKDVLTNDGSYVNHRHMAILCDVMCARGELMAVTRHGINRADTGALMRCSFEET 1428

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+IL +AA   E D  RGV+ENI+LGQLAP GTG+  + L++EMLK      +P  M   
Sbjct: 1429 VEILFEAASSGELDDCRGVSENIILGQLAPSGTGEFDVLLDNEMLKT-----VPPQM--- 1480

Query: 1441 EFGMTPARSPVSG---TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPG 1497
               + P R+ V     +P  DG M+P  + SP      ++++ F+    G +FSP  +PG
Sbjct: 1481 ---VLPGRAGVGAGAMSPMADGAMTPYDMGSP------MSESGFTGPDYGASFSPIINPG 1531

Query: 1498 ---------YSPSSPGYSP----SSPGYSPTSP---GYSPTSPGYSPTSPGYSPTSPTYS 1541
                     Y     G SP     SPGY+P SP   G SP SPGY     GYSP+SP++ 
Sbjct: 1532 QDEGGGLTAYGGFDGGMSPYRGGMSPGYAPQSPFSAGMSPASPGYGG---GYSPSSPSFG 1588

Query: 1542 PSSPGYSPTSPAYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPS----- 1595
                G+SP SP  + TSP+Y   SP+ YSP SP+YSPTSP+YSP+SP++S    S     
Sbjct: 1589 G---GFSPQSPGAALTSPAYQMGSPAGYSPASPAYSPTSPNYSPSSPAWSGGGGSKVSPT 1645

Query: 1596 -------------------------------YSPTSPSYSPTSPA----YSPTSPAYSPT 1620
                                           YSP+SP++SP++ A    YSPTSP YSP 
Sbjct: 1646 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPSSPNFSPSNQAGGAKYSPTSPQYSPK 1705

Query: 1621 SPAYSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 1677
            SPAYSPTSP+Y+     + S SP SPSYSPTSP YSPTSP  + TSP     S G SPTS
Sbjct: 1706 SPAYSPTSPTYNGGGRAASSTSPGSPSYSPTSPVYSPTSPQQNGTSPG----SNGTSPTS 1761

Query: 1678 PSYSPTSPTYSPTSP 1692
            P YSPTSP YSP SP
Sbjct: 1762 PQYSPTSPQYSPASP 1776



 Score =  125 bits (315), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/231 (40%), Positives = 118/231 (51%), Gaps = 52/231 (22%)

Query: 1600 SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1659
            SP     SP Y+P SP  +  SPA       YSP+SPS+      +SP SP  + TSP+Y
Sbjct: 1549 SPYRGGMSPGYAPQSPFSAGMSPASPGYGGGYSPSSPSFGG---GFSPQSPGAALTSPAY 1605

Query: 1660 SPTSPA-YSPTSPGYSPTSPSYSPTSPTYSPTSPS------------------------- 1693
               SPA YSP SP YSPTSP+YSP+SP +S    S                         
Sbjct: 1606 QMGSPAGYSPASPAYSPTSPNYSPSSPAWSGGGGSKVSPTSPSYSPTSPSYSPTSPSYSP 1665

Query: 1694 ----------------YNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSP---TSSS 1733
                             N   +  +    YSP+SP+ SP SP YSPTSP Y+     +SS
Sbjct: 1666 TSPSYSPTSPNYSPSSPNFSPSNQAGGAKYSPTSPQYSPKSPAYSPTSPTYNGGGRAASS 1725

Query: 1734 YSPTSPSYSPSSPTYSPSSPYNAGG--GNPDYSPSSPQYSPSA-GYSPSAP 1781
             SP SPSYSP+SP YSP+SP   G   G+   SP+SPQYSP++  YSP++P
Sbjct: 1726 TSPGSPSYSPTSPVYSPTSPQQNGTSPGSNGTSPTSPQYSPTSPQYSPASP 1776



 Score = 69.7 bits (169), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 69/197 (35%), Positives = 82/197 (41%), Gaps = 73/197 (37%)

Query: 1656 SPSYSPTSPAYSPTSP---GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSP 1712
            SP     SP Y+P SP   G SP SP Y      YSP+SPS+            +SP SP
Sbjct: 1549 SPYRGGMSPGYAPQSPFSAGMSPASPGYGGG---YSPSSPSFGG---------GFSPQSP 1596

Query: 1713 RLSPASP-YSPTSP-NYSPTSSSYSPTSPSYSPSSPTYSPSS------------------ 1752
              +  SP Y   SP  YSP S +YSPTSP+YSPSSP +S                     
Sbjct: 1597 GAALTSPAYQMGSPAGYSPASPAYSPTSPNYSPSSPAWSGGGGSKVSPTSPSYSPTSPSY 1656

Query: 1753 ------------------------------PYNAGGGNPDYSPSSPQYSP-SAGYSPSAP 1781
                                             AGG    YSP+SPQYSP S  YSP++P
Sbjct: 1657 SPTSPSYSPTSPSYSPTSPNYSPSSPNFSPSNQAGGAK--YSPTSPQYSPKSPAYSPTSP 1714

Query: 1782 GY-----SPSSTSQYTP 1793
             Y     + SSTS  +P
Sbjct: 1715 TYNGGGRAASSTSPGSP 1731


>gi|448082723|ref|XP_004195204.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
 gi|359376626|emb|CCE87208.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
          Length = 1758

 Score = 1687 bits (4369), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 862/1571 (54%), Positives = 1103/1571 (70%), Gaps = 83/1571 (5%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLG 58
            M  +FPYS A +  V+ VQFG+LSP+E+R +SV +IE  ET ++   +P+ GGL+DPRLG
Sbjct: 1    MSRQFPYSSAPLRAVKEVQFGLLSPEEVRAISVAKIEFPETIDQTTKRPREGGLNDPRLG 60

Query: 59   TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
            +IDR  KC+TC+ +M ECPGHFGH+ELAKP+FHIGF+  +  +   +C +C K+L DE +
Sbjct: 61   SIDRNFKCQTCSEDMTECPGHFGHIELAKPVFHIGFIAKIKKVCECICMHCGKLLLDETN 120

Query: 119  HKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKL 178
                QA+KIR+PK R   +   CK K  CE  D +         P+ + +GGCG  QP +
Sbjct: 121  PAMAQAIKIRDPKKRFNAVWSLCKAKMICEA-DVLSNENDPNSAPVTQGRGGCGHTQPTI 179

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              +G+K+   +K  + KN ++ + PE    ++ LT   +L V K IS EDC  LG N  Y
Sbjct: 180  RRDGLKLWGTWK--QNKNFEENEQPE----RRLLTPSEILSVFKHISPEDCFRLGFNEDY 233

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARP+WM++ VL +PPPPVRPS          DDLT +LA I++ N N++R E +G+P H+
Sbjct: 234  ARPEWMLITVLAVPPPPVRPSIAFNDTARGEDDLTFKLADILKANINVQRLEMDGSPQHV 293

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ISEF  LLQFH+ATY DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFS
Sbjct: 294  ISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFS 353

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVI+ DP +++DQ+GVP SIA  L+YPE VTPYNI RL E V  GP+  PG   AKY+
Sbjct: 354  ARTVISGDPNLDLDQVGVPISIAKTLSYPEIVTPYNIHRLTEYVRNGPNEHPG---AKYV 410

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IRD G R+DLRY K++ D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPY
Sbjct: 411  IRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMSHRVKVMPY 470

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ E+  VP  IVSPQSN+PVMGIVQ
Sbjct: 471  STFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQ 530

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL G RK+T RDTFIE D  MN+L W   +DG +P P I+KP+PLWTGKQ+ ++ IPK 
Sbjct: 531  DTLCGVRKMTLRDTFIEYDQVMNMLYWIPVWDGVIPPPAIVKPKPLWTGKQLLSMAIPKG 590

Query: 589  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            I+L R      D+ K +L+  D+ + I  GE++ G + KKT+G++ G LIH +  E GP 
Sbjct: 591  IHLQRF-----DDGKNLLSPKDSGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVMREKGPQ 645

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
               +  G  Q +VNYWLL N FSIGIGDTIADA TM+ +  TI  AK  V+ +I  AQ  
Sbjct: 646  VCAQLFGSIQKVVNYWLLHNGFSIGIGDTIADASTMKNVTTTIEDAKRKVQEIINDAQQN 705

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             L+PEPG T+ ESFE+ V++VLN ARD AG SA+ +L + NN+K MV +GSKGSFINISQ
Sbjct: 706  KLDPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQ 765

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            M+ACVGQQ VEGKRIPFGF DRTLPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM G
Sbjct: 766  MSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAG 825

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E 
Sbjct: 826  REGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEK 885

Query: 889  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
            Q +DS+      F++ +R ++ + N +    L E   +++   +L+ V D E  +L +DR
Sbjct: 886  QAIDSIPGSDESFERRYRIDVLDPNRSIKESLLETGKEIRGDVKLQKVLDEEYNQLLSDR 945

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
              L       GD +WPLPVNL+R+I NAQ+ F     + SD+   E+V +V  L  +L V
Sbjct: 946  QYLREVCFPGGDFNWPLPVNLRRIIQNAQQIFHNGRHKTSDLKLDEIVRSVQDLCSKLLV 1005

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            V G+  L  EAQ NATL F  LLRS  AS+RV++E++L R +FEWV+GEIE++F +S+V 
Sbjct: 1006 VRGDKALVKEAQNNATLLFQCLLRSRLASRRVVEEYKLNRISFEWVLGEIETQFQKSIVH 1065

Query: 1069 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1128
            PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTP+L+V+
Sbjct: 1066 PGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1125

Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1188
            L+  + +  E+AK VQ A+E+TTL++VT ATE++YDPDP  T+IEED + V++Y+ +PDE
Sbjct: 1126 LQKEIAADIEKAKVVQSAIEHTTLKNVTSATEIFYDPDPRSTVIEEDYDTVEAYFAIPDE 1185

Query: 1189 DI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
             +  + EK SPWLLR+EL+R  M+DK+L+M+ VAEKI+Q F +DL  I++DD ADKLI+R
Sbjct: 1186 KVEESIEKQSPWLLRLELDRAKMLDKQLTMSQVAEKISQNFGEDLFVIWSDDTADKLIIR 1245

Query: 1247 IRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR---------------------- 1284
             R++ D  PK    D  AE+D  LK+IE++ML  ++LR                      
Sbjct: 1246 CRVVRD--PKTLDEDADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVSSPDESG 1303

Query: 1285 -------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
                         GVNL  VM    VDA RT SN+ IEI+ VLGIEA R AL  E+  VI
Sbjct: 1304 EYKQGQEWVLETDGVNLADVMAVPGVDATRTYSNNFIEILSVLGIEATRTALFKEILNVI 1363

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
            +FDGSYVNYRH+A+L D MT RGHLMAITRHGINR+DTG +MRCSFEETV+ILL+AA  A
Sbjct: 1364 AFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLEAASSA 1423

Query: 1392 ESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPV 1451
            E D  RG++EN+MLGQ+AP+GTG   + ++D+ML+ A     PS +  +  G T A    
Sbjct: 1424 ELDDCRGISENVMLGQMAPLGTGAFDVMVDDKMLQLA-----PSNLSNV--GETGAYGDD 1476

Query: 1452 SG-TPYHDGMMSPGYL-FSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSS 1509
             G TPY +  M    + F      SP+  A  S   G +     +S G   +SPG  PSS
Sbjct: 1477 GGATPYREYEMEDDKIQFEEGAGFSPIHTAPVSDGSGAL-----TSYGGQLTSPG--PSS 1529

Query: 1510 P-GYSPTSPGY 1519
            P  Y  TSPGY
Sbjct: 1530 PFSYGATSPGY 1540


>gi|443728942|gb|ELU15060.1| hypothetical protein CAPTEDRAFT_170227 [Capitella teleta]
          Length = 1916

 Score = 1686 bits (4366), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 874/1606 (54%), Positives = 1126/1606 (70%), Gaps = 120/1606 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A + +V  +QFGILSPDEIR+MSV +  I++ ETTE G+PK GGL DPR G IDR  +
Sbjct: 8    SSAPLKEVHRMQFGILSPDEIRRMSVTEGGIKYPETTEGGRPKVGGLMDPRQGVIDRVSR 67

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM+ECPGHFGH++LAKP++H+GF+   + ++R  CF CSK+L D    K +  +
Sbjct: 68   CQTCAGNMSECPGHFGHVDLAKPVYHVGFLTKTIKVLRCFCFFCSKLLVDPAHPKIRDIV 127

Query: 126  KIRNPK--NRLKKILDACKNKTKCEGGDEIDV----PGQDGEEPLKKNK----GGCGAQQ 175
                 K   RL  + D CK K  CEGGDEID     PG + E+ ++K +    GGCG  Q
Sbjct: 128  SKSKGKGRQRLAHVYDLCKGKNICEGGDEIDKEQSEPGAE-EKKVRKQQASSHGGCGRYQ 186

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            PK+   G+ ++AE+K     N+D +      ++K  L+AER L + KRISDE+  ++G++
Sbjct: 187  PKIRRTGLTLMAEWK---HVNEDSQ------DKKIVLSAERALEIFKRISDEESNIIGMD 237

Query: 236  PKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAP 285
            PK+ARPDWMI+QVLP+PP  VRP+          DDLTH+LA II+ N  L+R E NGA 
Sbjct: 238  PKWARPDWMIIQVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKINNQLKRNELNGAA 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
            AHI+ E  ++LQFH+AT  DNE+PG PRA Q+SGRP+KS+  RLK KEGRIRGNLMGKRV
Sbjct: 298  AHILDEDTKMLQFHVATLVDNEMPGLPRAVQKSGRPLKSLKQRLKGKEGRIRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFS RTVITPDP + I Q+GVP SIA NLT+PE VTP+NI+ L ELV  G +  PG   A
Sbjct: 358  DFSGRTVITPDPMLAITQVGVPRSIAQNLTFPEIVTPFNIDSLSELVRRGANQYPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KYIIRD+G R+DLRY  K SD HL+ GYKVERH+ + D+++FNRQP+LHKMS+M HR+KI
Sbjct: 415  KYIIRDNGDRVDLRYHPKDSDLHLQCGYKVERHMQNNDYIVFNRQPTLHKMSMMCHRVKI 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            +P+STFRLNLSVT+PYNADFDGDEMN+H+ QS ETRAE+ +L  V + I++PQ+NRPVMG
Sbjct: 475  LPWSTFRLNLSVTTPYNADFDGDEMNLHLAQSLETRAEINQLAAVNRMIITPQANRPVMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDTL   RK+TKRD F+EK   MN+LM+   ++G++PQP ILKP+PLWTGKQVF+LII
Sbjct: 535  IVQDTLTAVRKMTKRDVFLEKRDMMNLLMYLPTWNGRMPQPAILKPKPLWTGKQVFSLII 594

Query: 586  PKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            P ++N  RT + H D  DKG    ++ GDT V +E GEL+ G LCKKTLG S+GSL+HV+
Sbjct: 595  PGRVNCIRTHSTHPDEEDKGPYKWISPGDTKVLVEDGELICGILCKKTLGASSGSLMHVV 654

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E G + A  F G+ Q ++N WLL    SIGIGDTIAD +T   I + I KAK +V ++
Sbjct: 655  FLEQGFEQAGDFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYSDIQNAIKKAKLDVIDV 714

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
            I++A +  LEP PG T+ ++FEN+VN++LN ARD+ GS+AQKSLSE N+ KAMV AGSKG
Sbjct: 715  IEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGSTAQKSLSEFNSFKAMVVAGSKG 774

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            + INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF
Sbjct: 775  NKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEF 834

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MVKYDGTVRN +  +IQ  YGEDG+
Sbjct: 835  FFHAMGGREGLIDTAVKTAETGYIQRRLMKAMESVMVKYDGTVRNQIEQLIQLTYGEDGL 894

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
               W+E Q L SLK   + F   FRF+   E     ++ +E I +++   +     + E 
Sbjct: 895  AGEWVEFQQLPSLKPSHAAFKANFRFDPTNERQMKKFLSEEVIKNIREDAKGLSEIETEW 954

Query: 942  QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
            ++L  DR  +  ++  +G+S   LP NL+RLIWNAQK F++D R+ +D+HP+ ++E V +
Sbjct: 955  KQLCEDRSAI-RQVFPTGNSKIVLPCNLQRLIWNAQKIFRIDTRKVTDLHPIRIIEGVRE 1013

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L ++  +V G+D LS +A  NATL    L+RST  SKRV++E RL+ +AFEW++GEIE+R
Sbjct: 1014 LNKKFMIVKGDDFLSKQANNNATLLIKSLVRSTLCSKRVIEEFRLSSQAFEWLLGEIEAR 1073

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F Q++  PGEM G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+KK K
Sbjct: 1074 FQQAMTQPGEMCGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPK 1133

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPSL+VFL        E+AK+V C LE+TTLR VT  T ++YD DPM ++I ED ++V  
Sbjct: 1134 TPSLTVFLTGKAAKDAEKAKDVLCRLEHTTLRKVTANTAIYYDADPMNSVICEDQDWVSI 1193

Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            YYEMPD D++  +ISPWLLRIEL+R+ M DKKL+M  ++EKI   F DDL CIFNDDNA+
Sbjct: 1194 YYEMPDFDVS--RISPWLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAE 1251

Query: 1242 KLILRIRIMNDEAPKGELNDE--SAEDDVFLKKIESNMLTEMALRGV------------- 1286
            KL+LRIRIMN +  K +  ++    EDDVFL+ IE+NMLT+M+L+G+             
Sbjct: 1252 KLVLRIRIMNTDENKADDEEQVDKMEDDVFLRCIEANMLTDMSLQGLESIAKVYMHLPTT 1311

Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                        L+ V+  +DVD  RTT+N ++EI   LG+EAV
Sbjct: 1312 DDKKRIELTPSGEFKAIQEWILETDGTGLIQVLSEKDVDPIRTTTNDIVEIFSCLGVEAV 1371

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R+++  E+  VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR +TG + RCSFEE
Sbjct: 1372 RKSIEKEMFNVISFDGSYVNYRHLALLCDIMTAKGHLMAITRHGINRQETGCLARCSFEE 1431

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM-- 1437
            TVDIL++AA   E D ++GV+ENIMLGQLA IGTG   L L+ E  K+ +E  +P+++  
Sbjct: 1432 TVDILMEAASHNEVDPMKGVSENIMLGQLARIGTGCFDLLLDAEKCKHGME--IPTHIGA 1489

Query: 1438 ---EGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPY-VGG------ 1487
                G+ FG   A SP S       M SP        +++P    Q +P  VGG      
Sbjct: 1490 GMGAGMFFG-AGASSPSS------NMGSP--------QMTPWGHDQSTPIPVGGANSPSY 1534

Query: 1488 --MAFSPTSSPGYSPSSPGYSPS-----SPGYSPTSPGYSPTSPGY 1526
               + S   +   +P SP YSP      SP YSP S GYSP+SP +
Sbjct: 1535 SPSSPSFMPASPATPHSPAYSPQSYSPASPSYSPGSAGYSPSSPNF 1580



 Score = 50.1 bits (118), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 96/130 (73%), Positives = 109/130 (83%)

Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1617
            SP Y+P SP YSP+SPSYSP+SP YSP+SPSY+PTSP YSP+SP YSP+SP YSP SP Y
Sbjct: 1775 SPQYTPASPHYSPSSPSYSPSSPQYSPSSPSYTPTSPKYSPSSPDYSPSSPQYSPASPQY 1834

Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 1677
            SP SP YSP SPSYSP+SP YSP SPSYSPTSP YSP SPSYSP+SP YSPTSP YSPT+
Sbjct: 1835 SPGSPDYSPNSPSYSPSSPQYSPASPSYSPTSPKYSPESPSYSPSSPKYSPTSPAYSPTT 1894

Query: 1678 PSYSPTSPTY 1687
            P ++P SP +
Sbjct: 1895 PKHTPQSPHF 1904



 Score = 48.5 bits (114), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 95/130 (73%), Positives = 107/130 (82%)

Query: 1572 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY 1631
            SP Y+P SP YSP+SPSYSP+SP YSP+SPSY+PTSP YSP+SP YSP+SP YSP SP Y
Sbjct: 1775 SPQYTPASPHYSPSSPSYSPSSPQYSPSSPSYTPTSPKYSPSSPDYSPSSPQYSPASPQY 1834

Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
            SP SP YSP SPSYSP+SP YSP SPSYSPTSP YSP SP YSP+SP YSPTSP YSPT+
Sbjct: 1835 SPGSPDYSPNSPSYSPSSPQYSPASPSYSPTSPKYSPESPSYSPSSPKYSPTSPAYSPTT 1894

Query: 1692 PSYNPQSAKY 1701
            P + PQS  +
Sbjct: 1895 PKHTPQSPHF 1904


>gi|398398966|ref|XP_003852940.1| DNA-directed RNA polymerase II subunit RPB1 [Zymoseptoria tritici
            IPO323]
 gi|339472822|gb|EGP87916.1| hypothetical protein MYCGRDRAFT_99873 [Zymoseptoria tritici IPO323]
          Length = 1773

 Score = 1686 bits (4365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 886/1797 (49%), Positives = 1174/1797 (65%), Gaps = 170/1797 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            F +S A +  V+ +QFG+ SP+EI+ MSV  IE+ ET   +R +P+  GL+DP+LGTIDR
Sbjct: 4    FAHSQAPLRTVQEIQFGLFSPEEIKNMSVCHIEYPETMDEQRNRPREKGLNDPKLGTIDR 63

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
               C TC  +  ECPGHFGH+ELA P+FH+GF+  +  I+ SVC NC K+L DE + +F 
Sbjct: 64   NTMCATCGESQQECPGHFGHIELAAPVFHVGFITKIKKILESVCNNCGKLLEDERNPQFA 123

Query: 123  QALKIRNPKNRLKKILDACKNKTKC---EGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
            QA+KIR+PK R ++I   CK+K  C   E  D  D  G+D ++P     GGCG  QP + 
Sbjct: 124  QAVKIRDPKRRFEQIAKLCKSKMDCAMDEPADANDGFGEDPKKPKIAGHGGCGNVQPTIR 183

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
               + + A  K  + ++ ++E   E    K+T+T +  L + K++ +ED   LGLN  YA
Sbjct: 184  KVQLTLTASTKVAKSEDGNEEGGVE----KKTITPQVALDLFKKLREEDLHRLGLNVDYA 239

Query: 240  RPDWMILQVLPIPPPPVRPS-------------DDLTHQLAMIIRHNENLRRQERNGAPA 286
            RP+WMI+ VLP+PPP VRPS             DDLT++L+ IIR N N+RR E+ G PA
Sbjct: 240  RPEWMIMTVLPVPPPAVRPSISVDGTSQGMRSEDDLTYKLSDIIRANSNVRRCEQEGLPA 299

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            H+  EF  LLQ+H+ATY DN++ G PR+ Q+SGRP+K+I +RLK+KEGR+RGNLMGKRVD
Sbjct: 300  HVREEFFGLLQYHVATYMDNDIAGLPRSIQKSGRPLKAIRARLKSKEGRLRGNLMGKRVD 359

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP +++DQ+GVP S A  LT+PE VT YNI +++ELV  GP   PG   AK
Sbjct: 360  FSARTVITGDPNLDLDQVGVPRSTARVLTFPERVTVYNIHKMQELVRNGPDQHPG---AK 416

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            ++IR+DG R+DLRY K++ +  L+LG+ VERH+ DGD+++FNRQPSLHK S+MGHR+K+M
Sbjct: 417  HVIREDGSRIDLRYHKRAGEIQLQLGWIVERHIVDGDYIIFNRQPSLHKESMMGHRVKVM 476

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            PYSTFR+NLSVTSPYNADFDGDEMN+HVPQ  ETRAEV  L  VP  IVSPQ N P+MGI
Sbjct: 477  PYSTFRMNLSVTSPYNADFDGDEMNLHVPQGHETRAEVANLCAVPHNIVSPQKNGPLMGI 536

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDT+ GC  +TK+D  I+    MNIL+W   +DG VP P I+KP+P WTGKQV +L  P
Sbjct: 537  VQDTMAGCWMMTKKDVMIDYQELMNILLWVPSWDGVVPPPAIIKPQPRWTGKQVASLFFP 596

Query: 587  KQINLFRTAAWHADN----DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
              +N F  A+ + DN     K IL        ++ GE++ G + K+ +G S   ++H I+
Sbjct: 597  PGLNYFMPASKNDDNPHEEKKEIL--------VQNGEIMWGRIWKQVVGASQSGVVHYIF 648

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             + GP+AA +F    Q +V +W+L + FS+GIGDTI D   +  I   I + K  V   +
Sbjct: 649  NDRGPEAAVEFFSGCQRIVCHWMLHHGFSVGIGDTIPDDHMVGEIEGAIVEEKLQVDKYV 708

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
            +Q Q  ++E  PG T+ E+FE++    L+ AR++AG +A   +   NN+  MV +GSKGS
Sbjct: 709  EQVQSDAMETLPGMTIRETFESQTKAALDNARNKAGDAAFALMKSCNNVGVMVNSGSKGS 768

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
              N+SQMTA VGQQ++EGKR+PFGF  R LPHF KDDY P SRGFVENSYLRGLTPQEFF
Sbjct: 769  STNVSQMTAAVGQQSLEGKRLPFGFKYRVLPHFPKDDYSPASRGFVENSYLRGLTPQEFF 828

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAMGGREGLIDTAVKT+ETGYIQRRLVKA+E+IM+KYDGTVRNSLGD++QF YGEDG+D
Sbjct: 829  FHAMGGREGLIDTAVKTAETGYIQRRLVKALEEIMIKYDGTVRNSLGDILQFTYGEDGLD 888

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNY------MLQEYIDDLKTIKELRDV 936
            + +IESQ ++++     +FD+ ++ ++  +N           M  E I D+    E++ +
Sbjct: 889  ATYIESQHINTIASSHGQFDRKYKIDVISQNKEFALTPANLEMAAELIGDV----EIQQL 944

Query: 937  FDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVV 996
            FD E + +  DR ++   +    +  + LP+N+ R+I NA+  FK++    SD+ P E +
Sbjct: 945  FDQEYEAISNDRQKIRNGLDDPEEKRY-LPLNINRMIQNARNKFKINDNSKSDLDPRETI 1003

Query: 997  EAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIG 1056
              +  L +RL V+ G+D LS EA  NATL    + RS  A KR++KE +L + A + V+G
Sbjct: 1004 PKIQALLDRLIVIRGDDSLSQEADMNATLLCKAMFRSRLAFKRLVKEDKLNKLALDNVLG 1063

Query: 1057 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1116
            ++E+RFL++LV PGEM+G +AAQSIGEPATQMTLNTFH AGV+AK  T GVPRL+EI+NV
Sbjct: 1064 DLENRFLRALVNPGEMVGVLAAQSIGEPATQMTLNTFHLAGVTAKTTTKGVPRLKEILNV 1123

Query: 1117 AKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDV 1176
            A+ IKTP++ VF  P    T+E AKN++  +E+T+LR+VT+ TE++YDP    T+I+ D 
Sbjct: 1124 AENIKTPNMKVFQDPAHGLTQEGAKNLRSMIEHTSLRNVTDVTEIYYDPVIEDTVIQADH 1183

Query: 1177 EFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
            + V+SY+ +P+E   PE  S WLLRI L R  ++DK L++  VA+KI + F  D+  IF+
Sbjct: 1184 DMVESYFIIPEESERPELQSKWLLRIVLGRRQLLDKGLTVTNVADKIKEVFGGDVAVIFS 1243

Query: 1237 DDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------ 1284
            DDNAD+ ++R+R++     K   ++E  ED   LK++E +ML  + LR            
Sbjct: 1244 DDNADEQVIRVRMITGGRDKENESEEEQEDT--LKRLEGHMLDTVVLRGVSGVKRAFVSN 1301

Query: 1285 -----------------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLG 1315
                                         GVNL  V+  E VD+ RTT NH   I++V G
Sbjct: 1302 EARMITIEDGSLVKSNSVEACKEWLLDTDGVNLKDVLAVEGVDSTRTTCNHFQTIMKVFG 1361

Query: 1316 IEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRC 1375
            IE VR +L+ E + V++ DGSYVN+RH+AILCD M  RG LMA+TRHGINR DTG +MRC
Sbjct: 1362 IEGVRASLIKEFKDVLTNDGSYVNHRHMAILCDVMCARGELMAVTRHGINRADTGALMRC 1421

Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS 1435
            SFEETV+IL DAA   E D  RGV+ENI+LGQLAP GTG+  + L+ EMLK+    Q   
Sbjct: 1422 SFEETVEILFDAASSGELDDCRGVSENIILGQLAPSGTGEFDMLLDTEMLKSVAPTQRAM 1481

Query: 1436 YMEGLEFGMTPARSPVS----GTPYHDGMMSP---GYLFSPNLR-----------LSPVT 1477
            +  G+  G       ++    G+P  DG  +    G  FSP +                 
Sbjct: 1482 H-SGIGVGAGSPEGAMTPYDIGSPLADGGYAGPDYGASFSPIINPGQDEGGGLTAYGGGF 1540

Query: 1478 DAQFSPYVGGMAFSPTSSPGYSPSSP----GYSPSSP--GYSPTSPGYSPTSPGYSPTSP 1531
            D   SPY GGM      SPGY+P+SP    G+SP+SP  GYSPTSPG +    GYSPTSP
Sbjct: 1541 DGGMSPYRGGM------SPGYAPTSPFNSGGFSPTSPAYGYSPTSPGMA----GYSPTSP 1590

Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP------------------ 1573
            G   TSP Y  +SP +SP SPAY+PTSP+YSPTSP+YS  S                   
Sbjct: 1591 GQGMTSPAYQVTSPQFSPASPAYTPTSPTYSPTSPAYSGGSKISPTSPSYSPTSPSYSPT 1650

Query: 1574 ---------SYSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY---- 1617
                     +YSPTSP+++P   TSP YSPTSP+YSPTSP+YSPTSP YSPTSP Y    
Sbjct: 1651 SPSYSPTSPNYSPTSPAHAPGSATSPKYSPTSPTYSPTSPAYSPTSPTYSPTSPKYGSGV 1710

Query: 1618 -----SPTSPAYSPTSPSYSPTSPS---YSPTSPS--YSPTSPSYSPTSPSYSPTSP 1664
                 SPTSP YSPTSP YSPTSP+   YSPTSP    SPTSP YSPTSP YSP SP
Sbjct: 1711 GASGASPTSPTYSPTSPVYSPTSPAQNGYSPTSPGQKQSPTSPQYSPTSPQYSPNSP 1767



 Score =  166 bits (419), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/244 (48%), Positives = 135/244 (55%), Gaps = 65/244 (26%)

Query: 1600 SPSYSPTSPAYSPTSP----AYSPTSPAYSPTSPSYSPTSPS---YSPTSPSYSPTSPSY 1652
            SP     SP Y+PTSP     +SPTSPAY      YSPTSP    YSPTSP    TSP+Y
Sbjct: 1545 SPYRGGMSPGYAPTSPFNSGGFSPTSPAYG-----YSPTSPGMAGYSPTSPGQGMTSPAY 1599

Query: 1653 SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP--------------------------- 1685
              TSP +SP SPAY+PTSP YSPTSP+YS  S                            
Sbjct: 1600 QVTSPQFSPASPAYTPTSPTYSPTSPAYSGGSKISPTSPSYSPTSPSYSPTSPSYSPTSP 1659

Query: 1686 TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSY---------S 1735
             YSPTSP++ P SA    S  YSP+SP  SP SP YSPTSP YSPTS  Y         S
Sbjct: 1660 NYSPTSPAHAPGSAT---SPKYSPTSPTYSPTSPAYSPTSPTYSPTSPKYGSGVGASGAS 1716

Query: 1736 PTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP---QYSPSAGYSPSAPGYSPSSTSQYT 1792
            PTSP+YSP+SP YSP+SP   G     YSP+SP   Q   S  YSP++P YSP+S     
Sbjct: 1717 PTSPTYSPTSPVYSPTSPAQNG-----YSPTSPGQKQSPTSPQYSPTSPQYSPNS----- 1766

Query: 1793 PQTN 1796
            PQ N
Sbjct: 1767 PQDN 1770


>gi|448087303|ref|XP_004196296.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
 gi|359377718|emb|CCE86101.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
          Length = 1772

 Score = 1685 bits (4363), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 858/1571 (54%), Positives = 1104/1571 (70%), Gaps = 83/1571 (5%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLG 58
            M  +FPYS A +  V+ VQFG+LSP+E+R +SV ++E  ET ++   +P+ GGL+DPRLG
Sbjct: 1    MSRQFPYSSAPLRAVKEVQFGLLSPEEVRAISVAKVEFPETIDQTTKRPREGGLNDPRLG 60

Query: 59   TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
            +IDR  KC+TC+ +M ECPGHFGH+ELAKP+FHIGF+  +  +   +C +C K+L DE +
Sbjct: 61   SIDRNFKCQTCSEDMTECPGHFGHIELAKPVFHIGFIAKIKKVCECICMHCGKLLLDETN 120

Query: 119  HKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKL 178
                QA+KIR+PK R   +   CK+K  CE  D +         P+ + +GGCG  QP +
Sbjct: 121  PAMAQAIKIRDPKKRFNAVWSLCKSKMICEA-DVLSNENDPNSAPVTQGRGGCGHTQPTI 179

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              +G+K+   +K  + KN ++ + PE    ++ LT   +L V K IS EDC  LG N  Y
Sbjct: 180  RRDGLKLWGTWK--QNKNFEENEQPE----RRLLTPSEILSVFKHISPEDCFRLGFNEDY 233

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARP+WM++ VL +PPPPVRPS          DDLT +LA I++ N N++R E +G+P H+
Sbjct: 234  ARPEWMLITVLAVPPPPVRPSIAFNDTARGEDDLTFKLADILKANINVQRLEMDGSPQHV 293

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ISEF  LLQFH+ATY DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFS
Sbjct: 294  ISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFS 353

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVI+ DP +++DQ+GVP SIA  L+YPE VTPYNI RL E V  GP+  PG   AKY+
Sbjct: 354  ARTVISGDPNLDLDQVGVPISIAKTLSYPEIVTPYNIHRLTEYVRNGPNEHPG---AKYV 410

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IRD G R+DLRY K++ D  L+ G+KVERHL D D VLFNRQPSLHKMS+M H++K+MPY
Sbjct: 411  IRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMSHKVKVMPY 470

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ E+  VP  IVSPQSN+PVMGIVQ
Sbjct: 471  STFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQ 530

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL G RK+T RDTFIE D  MN+L W   +DG +P P I+KP+PLWTGKQ+ ++ IPK 
Sbjct: 531  DTLCGIRKMTLRDTFIEYDQVMNMLYWIPVWDGVIPPPAIVKPKPLWTGKQLLSMAIPKG 590

Query: 589  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            I+L R      D+ K +L+  D+ + I  GE++ G + KKT+G++ G LIH +  E GP 
Sbjct: 591  IHLQRF-----DDGKNLLSPKDSGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVMREKGPQ 645

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
               +  G  Q +VNYWLL N FSIGIGDTIADA TM+ +  TI  AK  V+ +I  AQ  
Sbjct: 646  VCAQLFGSLQKVVNYWLLHNGFSIGIGDTIADASTMKNVTTTIEDAKKKVQEIINDAQQN 705

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             L+PEPG T+ ESFE+ V++VLN ARD AG SA+ +L + NN+K MV +GSKGSFINISQ
Sbjct: 706  KLDPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQ 765

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            M+ACVGQQ VEGKRIPFGF DRTLPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM G
Sbjct: 766  MSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAG 825

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E 
Sbjct: 826  REGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEK 885

Query: 889  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
            Q +DS+      F++ +R ++ + N +    L E   +++   +L+ V D E  +L +DR
Sbjct: 886  QAIDSIPGSDETFERRYRIDVLDPNRSIKESLLETGKEIRGDVKLQKVLDEEYNQLSSDR 945

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
              L       GD +WPLPVNL+R+I NAQ+ F     + SD+   E+V +V  L  +L V
Sbjct: 946  QYLREVCFPGGDYNWPLPVNLRRIIQNAQQIFHNGRHKTSDLKLDEIVRSVQDLCSKLLV 1005

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            V G+  L  EAQ NATL F  LLRS  AS+RV++E++L + +FEWV+GEIE++F +S+V 
Sbjct: 1006 VRGDKALVKEAQNNATLLFQCLLRSRLASRRVIEEYKLNKISFEWVLGEIETQFQKSIVH 1065

Query: 1069 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1128
            PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTP+L+V+
Sbjct: 1066 PGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1125

Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1188
            L+  + +  E+AK VQ A+E+TTL++VT ATE++YDPDP  T+IEED + V++Y+ +PDE
Sbjct: 1126 LQKEIAADIEKAKVVQSAIEHTTLKNVTSATEIFYDPDPRSTVIEEDYDTVEAYFAIPDE 1185

Query: 1189 DI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
             +  + EK SPWLLR+EL+R  M+DK+L+M+ VAEKI+Q F +DL  I++DD ADKLI+R
Sbjct: 1186 KVEESIEKQSPWLLRLELDRAKMLDKQLTMSQVAEKISQNFGEDLFVIWSDDTADKLIIR 1245

Query: 1247 IRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR---------------------- 1284
             R++ D  PK    D  AE+D  LK+IE++ML  ++LR                      
Sbjct: 1246 CRVVRD--PKTLDEDADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVSSPDESG 1303

Query: 1285 -------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
                         GVNL  VM    VD+ RT SN+ IEI+ VLGIEA R AL  E+  VI
Sbjct: 1304 EYKQGQEWVLETDGVNLADVMAVPGVDSTRTYSNNFIEILSVLGIEATRTALFKEILNVI 1363

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
            +FDGSYVNYRH+A+L D MT RGHLMAITRHGINR+DTG +MRCSFEETV+ILL+AA  A
Sbjct: 1364 AFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLEAASSA 1423

Query: 1392 ESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPV 1451
            E D  RG++EN+MLGQ+AP+GTG   + ++D+ML+ A     PS +  +  G T A    
Sbjct: 1424 ELDDCRGISENVMLGQMAPLGTGAFDVMVDDKMLQLA-----PSNLSNV--GETGAYGED 1476

Query: 1452 SG-TPYHDGMMSPGYL-FSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSS 1509
             G TPY +  M    + F      SP+  A  S   G +     +S G   +SPG  PSS
Sbjct: 1477 GGATPYREYEMEDDKIQFEEGAGFSPIHTAPVSDGSGAL-----TSYGGQLTSPG--PSS 1529

Query: 1510 P-GYSPTSPGY 1519
            P  Y  TSPGY
Sbjct: 1530 PFSYGGTSPGY 1540


>gi|156405|gb|AAA28126.1| RNA polymerase II [Caenorhabditis elegans]
          Length = 1859

 Score = 1684 bits (4362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 870/1635 (53%), Positives = 1121/1635 (68%), Gaps = 143/1635 (8%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMA 74
            V  VQFGIL P+EI++MSV  +E  E  E GKPK GGL DPR G IDR+ +C TC  N+ 
Sbjct: 15   VSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLT 74

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NPKN 132
            +CPGHFGHLELAKP+FHIGF+   L I+R VCF C ++L D+   +  + LK    N K 
Sbjct: 75   DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKK 134

Query: 133  RLKKILDACKNKTKCEGGDEID--------VPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            RL  I D CK K+ CEG  E +         P  DG    KK  GGCG  QP     G+ 
Sbjct: 135  RLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDG----KKVAGGCGRYQPSYRRVGID 190

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K  +  N+D +      ERK  LTAER L V ++I+DED  ++G++P++ARP+WM
Sbjct: 191  INAEWK--KNVNEDTQ------ERKIMLTAERDLEVFQQITDEDILVIGMDPQFARPEWM 242

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I  VLP+PP  VRP+          DDLTH+L+ II+ N+ L+R E NGA AH++++  +
Sbjct: 243  ICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR 302

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DN +PG P ATQ+ GRP+KSI  RLK KEGRIRGNLMGKRVDFSARTVIT
Sbjct: 303  LLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVIT 362

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + ID +GVP +IA NLT+PE VTP+N+++L+ELV  G    PG        +++G 
Sbjct: 363  ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPGA-------KENGA 415

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLRY  +++D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+STFR+N
Sbjct: 416  RVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMN 475

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQDTL   
Sbjct: 476  LSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAV 535

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            R +TKRD FI+    M++LM+   +DGKVPQP ILKP+PLWTGKQVF+LIIP  +N+ RT
Sbjct: 536  RMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRT 595

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V IE GELLSG +C KT+G S G+L+HV+  E+G + A
Sbjct: 596  HSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIA 655

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
              F  H Q ++N WL++   +IGIGDTIAD  T   I +TI KAK +V ++I++A +  L
Sbjct: 656  ANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDL 715

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FENKVNQ+LN ARD  GSSAQKSLSE NN K+MV +GSKGS INISQ+ 
Sbjct: 716  EPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVI 775

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGRE
Sbjct: 776  ACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGRE 835

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNSL  ++Q  YGEDG+D +W+E+Q 
Sbjct: 836  GLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQN 895

Query: 891  LDSLKMKKSEFDKAFRFEMDEENW------NPNYMLQEYIDD-LKTIKELRD---VFDAE 940
            + ++K   + F++ FR  + +         +  ++ + Y +D ++ I+E  D   + ++E
Sbjct: 896  MPTMKPNNAVFERDFRVSVAQNAIKLMDLTDNKFLRKNYSEDVVREIQESEDGISLVESE 955

Query: 941  VQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
              +LE DR  L  +    GD+   LP NL RLIWNAQK FKVD R   ++ P+ V+  V 
Sbjct: 956  WSQLEEDRRLLRKDFP-RGDAKIVLPCNLLRLIWNAQKIFKVDLRNAVNLSPLHVISGVR 1014

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
            +L ++L +V G D +S +AQ NATL  NILLRST  +K +  + +L  EAF+W++GEIES
Sbjct: 1015 ELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIES 1074

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RF Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K +
Sbjct: 1075 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTL 1134

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            KTPSL+VFL        E+AK+V C LE+TT   VT  T ++YDPDP  T+I ED E+V 
Sbjct: 1135 KTPSLTVFLTGAAAKDPEKAKDVLCKLEHTT---VTCNTAIYYDPDPKNTVIAEDEEWVS 1191

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
             +YEMPD D++  + SPWLLRIEL+R+ MVDKKL+M  +A++I+  F +D+  I+ DDNA
Sbjct: 1192 IFYEMPDHDLS--RTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNA 1249

Query: 1241 DKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------- 1286
            +KL+ R+RI  ++  KGE  +E     EDDVFL+ IE+NML+++ L+G+           
Sbjct: 1250 EKLVFRLRIAGED--KGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQP 1307

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                          LL V+    +D  RTTSN + EI EVLGIE
Sbjct: 1308 NTDDKKRIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIE 1367

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            AVR+A+  E+  VISFDGSYVNYRHLA+LCD MT +GHLMA +RHGINR + G +MRCSF
Sbjct: 1368 AVRKAIEREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAYSRHGINRQEVGALMRCSF 1427

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM 1437
            EETVDIL++AAV AE D ++GV+ENIMLGQLA  GTG   L L+ E  K  +E+     M
Sbjct: 1428 EETVDILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVM 1487

Query: 1438 EGLEFG----------MTPARSPVSG--TPYHDGM--------MSPGYLFSPNLRLSPVT 1477
             G  +G           +PA SP +   TP + G         MSPG  FSP    +  T
Sbjct: 1488 GGGFYGSFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSP----AGNT 1543

Query: 1478 DAQFSPYVGGMAFSPTSSPGYSPSSPG-----YSPSSPGYSPTSPG-YSPTSPGYSPTSP 1531
            D   SP+  G         G+SP+SPG      SP +P Y   SPG YSP+SP +S TSP
Sbjct: 1544 DGGASPFNEG---------GWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSP 1594

Query: 1532 GYSPTSPTYSPSSPG 1546
             YSPTSP+YSP+SP 
Sbjct: 1595 HYSPTSPSYSPTSPA 1609



 Score =  136 bits (343), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/130 (65%), Positives = 99/130 (76%), Gaps = 5/130 (3%)

Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTS 1724
            YSPTSP YSPTSP+YSPTSPTYSPTSPSY         S  YSPSSP  SP SP YSPTS
Sbjct: 1689 YSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTS 1748

Query: 1725 PNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGY 1783
            P YSPTS  YSP+SP+Y+PSSPTY+P+SP   G  +P YSP+SP YSP++  Y+PS+P Y
Sbjct: 1749 PQYSPTSPQYSPSSPTYTPSSPTYNPTSP--RGFSSPQYSPTSPTYSPTSPSYTPSSPQY 1806

Query: 1784 SPSSTSQYTP 1793
            SP+S + YTP
Sbjct: 1807 SPTSPT-YTP 1815



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 61/91 (67%), Gaps = 21/91 (23%)

Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSP-YNAGGG------------------NPDYSPSS 1767
            YSPTS +YSPTSP+YSP+SPTYSP+SP Y +GGG                  +P YSP+S
Sbjct: 1689 YSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTS 1748

Query: 1768 PQYSPSA-GYSPSAPGYSPSSTSQYTPQTNR 1797
            PQYSP++  YSPS+P Y+PSS + Y P + R
Sbjct: 1749 PQYSPTSPQYSPSSPTYTPSSPT-YNPTSPR 1778


>gi|440636420|gb|ELR06339.1| DNA-directed RNA polymerase II subunit A [Geomyces destructans
            20631-21]
          Length = 1728

 Score = 1682 bits (4356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 893/1751 (50%), Positives = 1171/1751 (66%), Gaps = 152/1751 (8%)

Query: 2    DTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKP--GGLSDPRLGT 59
            +  F +S A +  ++ +QFG+LSP+EI+ MSV  I + ET + GK KP   GL+DPRLG+
Sbjct: 3    NLHFAHSDAPLRTIQEIQFGLLSPEEIKNMSVAHILYPETMDEGKMKPRDQGLNDPRLGS 62

Query: 60   IDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH 119
            IDR  KC TC A MAECPGHFGH+ELAKP++H GF+K +  ++   C NC KIL D  + 
Sbjct: 63   IDRGFKCATCDAGMAECPGHFGHIELAKPVYHPGFLKKIKKLLEIACHNCGKILLDRSNP 122

Query: 120  KFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVP--GQDGEEPLKK-NKGGCGAQQP 176
            +FK A+ +R+PK R + I   CK K  C+    +D      D +   K+ + GGCG  QP
Sbjct: 123  QFKAAVSMRDPKRRFEAIWRLCKPKMICDADISVDDDEFAADPKAAAKRPSHGGCGNTQP 182

Query: 177  KLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
            ++    +++   +K  + ++++  Q PE    K+ +T E  L V + IS +D   LGLN 
Sbjct: 183  EVRQTALQLWGTWKVPKDEDNENGQ-PE----KKLITPEMALQVFRTISTDDIYDLGLNS 237

Query: 237  KYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNG 283
             YARP+WMI+ V             +      +R  DDLT++LA IIR N N+R+ +  G
Sbjct: 238  DYARPEWMIITVLPVPPPPVRPSISMDGTGQGMRGEDDLTYKLAEIIRANGNVRQAQSEG 297

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGK 343
            +PAH+  EF  LLQ+H+ATY DN++ GQP++ Q+SGRP+KSI +RLK KEGR+R NLMGK
Sbjct: 298  SPAHVALEFESLLQYHVATYMDNDIAGQPQSLQKSGRPVKSIRARLKGKEGRLRSNLMGK 357

Query: 344  RVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKT 403
            RVDFSARTVIT DP + +D++GVP SIA  LTYPETVTPYNI +L +LV+ GP+  PG  
Sbjct: 358  RVDFSARTVITGDPNLELDEVGVPRSIARILTYPETVTPYNIGKLHQLVQNGPNDHPG-- 415

Query: 404  GAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
             AKYIIR+DG R+DLR+ K++    LE G KVERH+ DGDF++FNRQPSLHK S+MGHR+
Sbjct: 416  -AKYIIRNDGSRIDLRHHKRAGAISLEYGNKVERHIVDGDFIIFNRQPSLHKESMMGHRV 474

Query: 464  KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
            ++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV +L MVP  IVSPQ N P+
Sbjct: 475  RVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVNQLCMVPLNIVSPQRNGPL 534

Query: 524  MGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNL 583
            MGIVQDTL G  K+T+RD F+ K+  MN+L+W   +DG +PQP I+KPRP WTGKQ+ ++
Sbjct: 535  MGIVQDTLAGVYKLTRRDVFLTKETMMNVLLWVPSWDGVIPQPAIIKPRPRWTGKQLISM 594

Query: 584  IIPKQINLFRTAAWHAD---NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHV 640
            IIPK++NL        D    D G+L        I +GELL G + KK +G ++G ++H+
Sbjct: 595  IIPKEVNLHTANDNREDAPLKDDGLL--------ISEGELLFGLITKKVVGATSGGVVHI 646

Query: 641  IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKN 700
            I+ E+G   AR F    Q +VNYWL  N FSIGIGDTI D  T++ I   + + K+ V  
Sbjct: 647  IFNELGWLEARNFFTGCQTVVNYWLYHNGFSIGIGDTIPDKATIDKIEGAVKEQKDIVDG 706

Query: 701  LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760
            L+ +A    LE  PG  + E+FE+ V++ LNTARD+AG+  ++SL + NN   M  +GSK
Sbjct: 707  LVLEATTNKLESLPGMNVRETFESLVSKALNTARDKAGTRTEQSLKDINNAVIMARSGSK 766

Query: 761  GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 820
            GS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP E
Sbjct: 767  GSTINISQMTALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPSE 826

Query: 821  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 880
            FFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+MVKYDGTVRNSLGD++QF+YGEDG
Sbjct: 827  FFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIVQFIYGEDG 886

Query: 881  MDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDA 939
            +D+V+IE Q +DS+ M  S F++ +R + MD+ N  P  ML E+  +L +  +++ + DA
Sbjct: 887  LDAVYIEKQRVDSINMSDSAFEERYRHDVMDQANPLPADML-EHASELMSDVKVQHLLDA 945

Query: 940  EVQKLEADRYQL-ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
            E ++L+ DR  L         D S  LP+N+ R++ +A++ FK+D  + SD+HP  V+E+
Sbjct: 946  EWEQLKVDRKMLREVNFKKKDDESMQLPLNVVRILDSAKRLFKLDDSQRSDLHPKHVIES 1005

Query: 999  VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            V  L +++ +V GED LS+EAQKNATL     LR   A KRV    +L++ AF+  IGE+
Sbjct: 1006 VRNLLDKMMIVRGEDSLSIEAQKNATLLIKAQLRQRLAFKRVAIHQKLSKLAFDKAIGEL 1065

Query: 1059 ESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK 1118
            ESRF  +LV PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+A 
Sbjct: 1066 ESRFTHALVNPGEMVGILAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNIAT 1125

Query: 1119 KIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEF 1178
             IKTPS+ V+ + G N ++E AK ++ A+E+T LRSVT ATE++YDPDP  T IE+D + 
Sbjct: 1126 NIKTPSMVVY-QEGDNPSQETAKLLRSAVEHTNLRSVTAATEIYYDPDPENTTIEQDQDM 1184

Query: 1179 VKSYYEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFND 1237
            V S+Y +PDE+  + + +S WLLRI L+R+ M+DK L++  VA +I +E+  DL  IF+D
Sbjct: 1185 VDSHYMVPDENSESHDSLSRWLLRIILDRQKMLDKGLNVDDVAVRIKEEYPKDLNVIFSD 1244

Query: 1238 DNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV----------- 1286
            +NA++L++R R++     K E  D S E DV LKK+E+++L  + LRGV           
Sbjct: 1245 NNAEELVIRCRMITRMEGKYEDGDNS-EQDVSLKKLENHVLDSLTLRGVPGIDRAFLNKE 1303

Query: 1287 ------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGI 1316
                                           L AV+    VD  RT SNH ++I+EV GI
Sbjct: 1304 TKLVETEDGALIASKDDPKCQEWYLDTSGTALAAVLSVPGVDTTRTYSNHFVQILEVFGI 1363

Query: 1317 EAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCS 1376
            EAVR AL+ EL  V++FDGSYVN+RHLA+L D MT RGHLMAITRHGINR DTG +MRCS
Sbjct: 1364 EAVRSALMRELTQVLAFDGSYVNHRHLALLVDVMTSRGHLMAITRHGINRADTGALMRCS 1423

Query: 1377 FEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSY 1436
            FEETV+ILL+AA   E D  RGV+EN++LGQLAP+GTG+  L L+ +ML+  +     + 
Sbjct: 1424 FEETVEILLEAAAVGELDDCRGVSENVILGQLAPLGTGEMELMLDPKMLETVVS---DNG 1480

Query: 1437 MEGLEFGMTPARSPVSG--TPYHDG--MMSPGYLFSPNLR--LSPVTD------------ 1478
              GL  G+ P +    G  TPY     M   GY+ +P+     SP++             
Sbjct: 1481 RMGLMSGL-PVKGGYEGAATPYGSDSPMADSGYIGTPDYAAGFSPISSGGSESPSGFGGL 1539

Query: 1479 ---AQFSP-YVGGMAFSPTSSP-GYSPSSPGYSPSSPGYSPTSP-GYSPTSPGYSPTSPG 1532
                  +P Y     +S   SP GYSP+SP +  SSPG+SPTSP GYSPTSP    TSPG
Sbjct: 1540 TEYGGITPGYAAASPYSGARSPGGYSPTSP-FGVSSPGFSPTSPRGYSPTSPAMGMTSPG 1598

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPS-------------------------------- 1560
            ++PTSP++SP SP ++PTSP YSPTSPS                                
Sbjct: 1599 FAPTSPSFSPQSPAFTPTSPMYSPTSPSGMQHYSPTSPSFSPTSPSYSPSSPQFSPASPL 1658

Query: 1561 YSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP 1619
            YSPTSP +       SP SP+  SPTSP YSPTSP++SPTSP YSPTSPA      A+SP
Sbjct: 1659 YSPTSPVFGGGKSKTSPMSPNQTSPTSPVYSPTSPTWSPTSPRYSPTSPA------AFSP 1712

Query: 1620 TSPAYSPTSPS 1630
            TSP YSPTSP+
Sbjct: 1713 TSPQYSPTSPT 1723



 Score =  135 bits (340), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/192 (46%), Positives = 110/192 (57%), Gaps = 31/192 (16%)

Query: 1610 YSPTSPAYSPTSPAYSPTSPS-YSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPAYS 1667
            Y   +P Y+  SP     SP  YSPTSP +  +SP +SPTSP  YSPTSP+   TSP ++
Sbjct: 1542 YGGITPGYAAASPYSGARSPGGYSPTSP-FGVSSPGFSPTSPRGYSPTSPAMGMTSPGFA 1600

Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPS-------------------YNPQSAKYSPSLAYS 1708
            PTSP +SP SP+++PTSP YSPTSPS                             S  YS
Sbjct: 1601 PTSPSFSPQSPAFTPTSPMYSPTSPSGMQHYSPTSPSFSPTSPSYSPSSPQFSPASPLYS 1660

Query: 1709 PSSPRLSPA-SPYSPTSPNY-SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPS 1766
            P+SP      S  SP SPN  SPTS  YSPTSP++SP+SP YSP+SP         +SP+
Sbjct: 1661 PTSPVFGGGKSKTSPMSPNQTSPTSPVYSPTSPTWSPTSPRYSPTSP-------AAFSPT 1713

Query: 1767 SPQYSPSAGYSP 1778
            SPQYSP++  SP
Sbjct: 1714 SPQYSPTSPTSP 1725



 Score =  134 bits (336), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 101/243 (41%), Positives = 128/243 (52%), Gaps = 54/243 (22%)

Query: 1528 PTSPGYSPTSPTYSPSSP----GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1583
            P   GY   +  Y   SP    GY  T P Y+     +SP S   S +   +   +  Y 
Sbjct: 1489 PVKGGYEGAATPYGSDSPMADSGYIGT-PDYAA---GFSPISSGGSESPSGFGGLT-EYG 1543

Query: 1584 PTSPSYSPTSPSYSPTSPS-YSPTSPAYSPTSPAYSPTSP-AYSPTSPSYSPTSPSYSPT 1641
              +P Y+  SP     SP  YSPTSP +  +SP +SPTSP  YSPTSP+   TSP ++PT
Sbjct: 1544 GITPGYAAASPYSGARSPGGYSPTSP-FGVSSPGFSPTSPRGYSPTSPAMGMTSPGFAPT 1602

Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPA--------------------------------YSPT 1669
            SPS+SP SP+++PTSP YSPTSP+                                YSPT
Sbjct: 1603 SPSFSPQSPAFTPTSPMYSPTSPSGMQHYSPTSPSFSPTSPSYSPSSPQFSPASPLYSPT 1662

Query: 1670 SP----GYSPTSP----SYSPTSPTYSPTSPSYNPQSAKYSPS--LAYSPSSPRLSPASP 1719
            SP    G S TSP      SPTSP YSPTSP+++P S +YSP+   A+SP+SP+ SP SP
Sbjct: 1663 SPVFGGGKSKTSPMSPNQTSPTSPVYSPTSPTWSPTSPRYSPTSPAAFSPTSPQYSPTSP 1722

Query: 1720 YSP 1722
             SP
Sbjct: 1723 TSP 1725



 Score =  117 bits (292), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 81/195 (41%), Positives = 106/195 (54%), Gaps = 53/195 (27%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPAYSPTSP-GYSPTSPSYSPTSPTYS 1688
            Y   +P Y+  SP     SP  YSPTSP +  +SP +SPTSP GYSPTSP+   TSP ++
Sbjct: 1542 YGGITPGYAAASPYSGARSPGGYSPTSP-FGVSSPGFSPTSPRGYSPTSPAMGMTSPGFA 1600

Query: 1689 PTSPSYNPQSAKYSPSLAYSPSSPRLSPASP----------------------------- 1719
            PTSPS++PQS       A++P+SP  SP SP                             
Sbjct: 1601 PTSPSFSPQSP------AFTPTSPMYSPTSPSGMQHYSPTSPSFSPTSPSYSPSSPQFSP 1654

Query: 1720 ----YSPTSPNYSPTSSSYSPTSPSY-SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS- 1773
                YSPTSP +    S  SP SP+  SP+SP YSP+S        P +SP+SP+YSP+ 
Sbjct: 1655 ASPLYSPTSPVFGGGKSKTSPMSPNQTSPTSPVYSPTS--------PTWSPTSPRYSPTS 1706

Query: 1774 -AGYSPSAPGYSPSS 1787
             A +SP++P YSP+S
Sbjct: 1707 PAAFSPTSPQYSPTS 1721


>gi|194389262|dbj|BAG65619.1| unnamed protein product [Homo sapiens]
          Length = 1935

 Score = 1682 bits (4356), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 869/1571 (55%), Positives = 1102/1571 (70%), Gaps = 117/1571 (7%)

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            RK + +T   +  + PG+         + H+GF+   + ++R VCF CSK+L D ++ K 
Sbjct: 39   RKGERQTAVTSAVQEPGYLF-------IRHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKI 91

Query: 122  KQALKIR--NPKNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGA 173
            K  L      PK RL  + D CK    CEGG+E+D    V   +G+E L K KG  GCG 
Sbjct: 92   KDILAKSKGQPKKRLTHVYDLCKGNNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGR 151

Query: 174  QQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
             QP++   G+++ AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG
Sbjct: 152  YQPRIRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLG 202

Query: 234  LNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNG 283
            + P+YARP+WMI+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NG
Sbjct: 203  MEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNG 262

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGK 343
            A AH+I+E  +LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGK
Sbjct: 263  AAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGK 322

Query: 344  RVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKT 403
            RVDFSARTVITPDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG  
Sbjct: 323  RVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG-- 380

Query: 404  GAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
             AKYIIRD+G R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+L KMS+MGHR+
Sbjct: 381  -AKYIIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLRKMSMMGHRV 439

Query: 464  KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
            +I+P+STFRLNLSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPV
Sbjct: 440  RILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPV 499

Query: 524  MGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNL 583
            MGIVQDTL   RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+L
Sbjct: 500  MGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSL 559

Query: 584  IIPKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIH 639
            IIP  IN  RT + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H
Sbjct: 560  IIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVH 619

Query: 640  VIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVK 699
            + + E+G D  R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V 
Sbjct: 620  ISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVI 679

Query: 700  NLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGS 759
             +I++A +  LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+
Sbjct: 680  EVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGA 739

Query: 760  KGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQ 819
            KGS INISQ+ A VGQQNVEGKRIPFGF  RTLPHF +DDYGPESRGFVENSYL GLTP 
Sbjct: 740  KGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIEDDYGPESRGFVENSYLAGLTPT 799

Query: 820  EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGED 879
            EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGED
Sbjct: 800  EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGED 859

Query: 880  GMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDA 939
            G+    +E Q L +LK     F+K FRF+   E      + ++ + D+ +   +++  + 
Sbjct: 860  GLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELER 919

Query: 940  EVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
            E +++  DR  L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V
Sbjct: 920  EFERMREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGV 978

Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
             KL ++L +V G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIE
Sbjct: 979  KKLSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIE 1038

Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
            S+F Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK
Sbjct: 1039 SKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKK 1098

Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
             KTPSL+VFL        ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V
Sbjct: 1099 PKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWV 1158

Query: 1180 KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
              YYEMPD D+A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDN
Sbjct: 1159 NVYYEMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDN 1216

Query: 1240 ADKLILRIRIMNDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR------------ 1284
            A+KL+LRIRIMN +  K +  +E     +DDVFL+ IESNMLT+M L+            
Sbjct: 1217 AEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHL 1276

Query: 1285 ----------------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGI 1316
                                        GV+L+ V+  +DVD  RTTSN ++EI  VLGI
Sbjct: 1277 PQTDNKKKIIITEDGEFKALQEWILETDGVSLIRVLSEKDVDPVRTTSNDIVEIFTVLGI 1336

Query: 1317 EAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCS 1376
            EAVR+AL  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CS
Sbjct: 1337 EAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCS 1396

Query: 1377 FEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLP 1434
            FEETVD+L++AA   ESD ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P
Sbjct: 1397 FEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIP 1456

Query: 1435 SYME----GLEFGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYV 1485
                    G+ FG  P  SP+ G     TP++ G  +P Y        SP   +  +P  
Sbjct: 1457 GLGAAGPTGMFFGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP-- 1506

Query: 1486 GGMAFSPTSSPGYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT 1539
            G   FSP+++   S  SPGYSP+      SPG    S  Y P SPG    SP YSPTSP 
Sbjct: 1507 GAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPA 1564

Query: 1540 YSPSSP-GYSP 1549
            Y P SP GY+P
Sbjct: 1565 YEPRSPGGYTP 1575



 Score =  174 bits (441), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 86/111 (77%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP +SPTSP YSPTSP YSPT P+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1818 YTPTSPKFSPTSPKYSPTSPKYSPTGPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1877

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1878 SPTYSPTSPQYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1928



 Score =  173 bits (438), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 86/111 (77%), Positives = 94/111 (84%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP +SPTSP YSPTSP YSPT P YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1818 YTPTSPKFSPTSPKYSPTSPKYSPTGPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1877

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1878 SPTYSPTSPQYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1928



 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 86/111 (77%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP +SPTSP YSPTSP YSP+ P YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1818 YTPTSPKFSPTSPKYSPTSPKYSPTGPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1877

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1878 SPTYSPTSPQYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1928



 Score =  172 bits (435), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 86/115 (74%), Positives = 96/115 (83%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP +SPTSP YSP+SP YSPT P YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1818 YTPTSPKFSPTSPKYSPTSPKYSPTGPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1877

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1878 SPTYSPTSPQYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1928



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 82/112 (73%), Positives = 94/112 (83%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P +SP+SP YSP+SP YSPT P YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1818 YTPTS-PKFSPTSPKYSPTSPKYSPTGPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1876

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1877 TSPTYSPTSPQYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1928



 Score =  159 bits (401), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/120 (69%), Positives = 93/120 (77%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP +SPTSP YSPTSP YSPT P+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1818 YTPTSPKFSPTSPKYSPTSPKYSPTGPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1877

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1878 SPTYSPTSPQYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1928



 Score =  137 bits (344), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/130 (60%), Positives = 88/130 (67%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP +SPTSP YSPTSP YSPT P YSPT+P YSPTSPTYSPTSP            
Sbjct: 1818 YTPTSPKFSPTSPKYSPTSPKYSPTGPTYSPTTPKYSPTSPTYSPTSP------------ 1865

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1866 -VYTPTSPK------YSPTSPTYSPTSPQYSPTSPTYSPTSPKGSTYSPTS--------P 1910

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1911 GYSPTSPTYS 1920


>gi|328772047|gb|EGF82086.1| hypothetical protein BATDEDRAFT_86817 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1797

 Score = 1680 bits (4351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 854/1546 (55%), Positives = 1091/1546 (70%), Gaps = 76/1546 (4%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
            FP S A + KV+ VQFGILSP+E + MSV +IEH E  +  +PK GGL DPRLGTIDR  
Sbjct: 10   FPASSAPLRKVKTVQFGILSPEETKAMSVAKIEHFELMDNDRPKLGGLLDPRLGTIDRNF 69

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC  NM +CPGHFGH+ELAKP+FH GF+K +  ++  VC  C K+  DE + +F   
Sbjct: 70   KCQTCGENMTDCPGHFGHIELAKPVFHQGFLKIIKKVLECVCHYCGKLKVDESNERFVLF 129

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD--GEEPLKKNKGGCGAQQPKLTIEG 182
             +I++ + R  ++   CK KT CEGG+E    GQ      P KK  GGCG +QP      
Sbjct: 130  RRIKSRRRRFHEVWQLCKTKTVCEGGEEQSEGGQQKPNGHPHKKPHGGCGQKQPVYRSAI 189

Query: 183  MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
            +K++A +KA   K++D +   + +E    +T E+ L +L+ ISD+D   +GL+  +ARP+
Sbjct: 190  LKIMANFKA--TKDEDGKHEAQTIE----MTPEKTLTLLRSISDQDATDMGLSADWARPE 243

Query: 243  WMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
            WMI+  LP+PP PVRPS          DDLTH+L  II+ N +L+R E  GAPAHI++EF
Sbjct: 244  WMIITTLPVPPMPVRPSISMDGAGRGEDDLTHKLMDIIKANISLKRHETEGAPAHIVNEF 303

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
              LLQFH+ATY +N++   P+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTV
Sbjct: 304  ENLLQFHVATYMNNDIANLPQAMQKSGRPLKSIAARLKGKEGRLRGNLMGKRVDFSARTV 363

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
            IT DP ++IDQ+GVP SIA NLT+PETVTPYNI+ L+++V+ GP+  PG   AKY+IRD+
Sbjct: 364  ITGDPNLSIDQVGVPRSIARNLTFPETVTPYNIDILQQMVQNGPNEHPG---AKYVIRDN 420

Query: 413  GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
            G+R+DLRY K+  D HL+ GYKVERHL D D+++FNRQPSLHKMS+MGHR+KIMPYSTFR
Sbjct: 421  GERVDLRYSKRGGDIHLQYGYKVERHLLDNDYIIFNRQPSLHKMSMMGHRVKIMPYSTFR 480

Query: 473  LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
            LNLSVTSPYNADFDGDEMNMHVPQS ETRAE+  L MVP  IVSPQ N PVMGIVQDTL 
Sbjct: 481  LNLSVTSPYNADFDGDEMNMHVPQSHETRAEIQGLCMVPLQIVSPQKNAPVMGIVQDTLC 540

Query: 533  GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
            G RK +KRDTF+++D+ MN+LMW  D+DG +P P ILKP PLWT KQ+ +LI+PK INL 
Sbjct: 541  GIRKFSKRDTFLKRDLMMNLLMWVPDWDGIIPTPAILKPIPLWTAKQIISLILPK-INLV 599

Query: 593  RTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARK 652
               A H DN+K  ++ GDT V IE GELL G LCK+T+G+S   +IH    E+GPD    
Sbjct: 600  GFHAAHPDNEKTDISPGDTKVLIEDGELLMGILCKRTVGSSANGIIHTSMNELGPDVTMG 659

Query: 653  FLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEP 712
            F   TQ ++NYWLLQN FSIGIGDTIAD +TMETINDTI+ AK  V  +I++AQ  +LE 
Sbjct: 660  FFNGTQRVINYWLLQNGFSIGIGDTIADRQTMETINDTIAHAKREVNKIIQKAQTDTLEV 719

Query: 713  EPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 772
             PG T+ +SFE+ VNQ LN ARD AG SA+KSL E NN+K MV +GSKGSFINISQMTAC
Sbjct: 720  LPGMTIRQSFESLVNQELNRARDNAGKSAEKSLKEYNNVKQMVVSGSKGSFINISQMTAC 779

Query: 773  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 832
            VGQQNVEGKRIPFGF DRTLPHFT+DD+ PESRGFVENSYLRGLTPQEFFFHAMGGREGL
Sbjct: 780  VGQQNVEGKRIPFGFKDRTLPHFTRDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGL 839

Query: 833  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLD 892
            IDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRN+LGD++QF YGEDGM+   +E QTL 
Sbjct: 840  IDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNALGDIVQFTYGEDGMEGAKVEKQTLR 899

Query: 893  SLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            S+ M  ++F +++R ++ +      PN +    IDD+    E +  FD E ++L  DR  
Sbjct: 900  SMSMSNADFVRSYRVDILDGVHKLKPNKLEYRIIDDMSQNPEAQVKFDEEFEQLAEDRLM 959

Query: 951  LATEI--ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
            L  +I   TS D  W LPVNL+RLIWNA+ TF +D  +PSD+HPM V++ V  L + L V
Sbjct: 960  LRQQIFPNTSTD-KWALPVNLERLIWNARNTFHLDRNKPSDLHPMHVIDKVKALLDNLVV 1018

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            V G+D LS+EAQ NATL F ILLRST A++RV++++ L+ +AF+W++GEI++RF Q++V 
Sbjct: 1019 VRGKDELSLEAQYNATLLFQILLRSTLATRRVIEDYHLSTQAFDWLLGEIDARFNQAIVH 1078

Query: 1069 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1128
            PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVAK IKTP L ++
Sbjct: 1079 PGEMVGTIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAKNIKTPRLEIY 1138

Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1188
            L P    + E AK +   +E+TTLR +T +TE+WYDPDP+ ++ E+D E ++  Y + D 
Sbjct: 1139 LDPEYRRSMEMAKKIHSTIEHTTLRKLTASTEIWYDPDPLNSVNEQDREIME-IYAITDA 1197

Query: 1189 DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
                  +SPW+LRI LN +  +DK ++M A+  ++ Q F  DL C  +DDNA +LI+  R
Sbjct: 1198 GEDLSNVSPWVLRIHLNFQRKIDKGMTMDAICAELMQPFGGDLKCWHSDDNAQELIILAR 1257

Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---------------------- 1286
            I+ND+       D+  E+D FL++IE N+L ++ L G+                      
Sbjct: 1258 IVNDDKGD-MDMDDRLEEDAFLRRIEHNILNDITLCGIKNISRVFISESKYTSVDESGVI 1316

Query: 1287 --------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
                          NL+ V+ H  VDA RT SN   EI++VLGIEA R A+L E R VI 
Sbjct: 1317 RPDNPEYFLETDGTNLIQVLAHHGVDAVRTYSNFACEIMDVLGIEATRAAILKETRKVIE 1376

Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
            FDGSYVNYRHLA+LCD MT RG +MAI+RHGINR D G + R SFEETVD+LL+AA   E
Sbjct: 1377 FDGSYVNYRHLALLCDIMTQRGSIMAISRHGINRTDAGALARASFEETVDLLLEAAGLGE 1436

Query: 1393 SDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVS 1452
             D  +GV+EN+MLGQLAP+GTG+  + L++++L +A     P +M        P  +   
Sbjct: 1437 LDDCKGVSENVMLGQLAPLGTGEFGVLLDEDLLLHAP--VRPDFMM-----RAPHAALDG 1489

Query: 1453 GTPYHDGMMSPG---YLFSPNLRLSPVTDAQFSPYVGGMAFSPTSS 1495
            G     G MSP    Y+      +       +SP VG +AFSP  +
Sbjct: 1490 GLGSMSGFMSPAHTPYIDRSPSPIPFSPSGGYSP-VGQVAFSPVGA 1534


>gi|261189983|ref|XP_002621402.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
            dermatitidis SLH14081]
 gi|239591638|gb|EEQ74219.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
            dermatitidis SLH14081]
 gi|239612830|gb|EEQ89817.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
            dermatitidis ER-3]
 gi|327351995|gb|EGE80852.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
          Length = 1746

 Score = 1679 bits (4349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 908/1768 (51%), Positives = 1183/1768 (66%), Gaps = 140/1768 (7%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTI 60
             +FPYS A++  ++ +QFG+LSP+EI++MSVV +E+ ET   +R +P+  GL+DPRLGTI
Sbjct: 4    VKFPYSKAQLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEQRQRPREKGLNDPRLGTI 63

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DR  +C TC   + +CPGHFGH+EL+ P+FHIGF+  +  ++ +VC NC KI A+  D K
Sbjct: 64   DRNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTTDQK 123

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK--KNKGGCGAQQPKL 178
            + +AL+ R+PK R   I    K+   CE     D     G+EP K   + GGCG  QP++
Sbjct: 124  YLEALRFRDPKRRFDAIWRLSKDVLICEADPSPDDDDPFGKEPSKPVHSHGGCGNIQPQI 183

Query: 179  TIEGMKMIAEYKAQRKKN--DDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
              EG+ ++  +K  + ++  DD + Q PE    K+ +T +  L + K IS+ED +L+GL+
Sbjct: 184  RKEGISLVGTWKPSKNRDMMDDMDVQQPE----KRQITPQMALNIFKTISEEDVRLMGLS 239

Query: 236  PKYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WMI+ VLP+PPPPV             R  DDLT++LA I+R N+N+ R E+ 
Sbjct: 240  NDYARPEWMIITVLPVPPPPVRPSVLVGGSGSGQRGEDDLTYKLAEIVRANQNVTRCEQE 299

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P H++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I  RLK KEGR+R NLMG
Sbjct: 300  GSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMG 359

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT DP +++D++GVP SIA  LTYPE VTP+NI +L ELV+ GP   PG 
Sbjct: 360  KRVDFSARTVITGDPNLSLDEVGVPLSIAQTLTYPEVVTPFNIAKLGELVDNGPDIHPG- 418

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
              A+Y+IR+ G+R+DLR  K     + L+ G++VERH+ DGD +LFNRQPSLHK S+MGH
Sbjct: 419  --ARYVIRNTGERIDLRLHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSLHKESMMGH 476

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
            RI++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L MVP  IVSPQ N 
Sbjct: 477  RIRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVSPQRNG 536

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
            P+MGIVQDTL G  KI  RD F+ K+  MNIL+W  D+DG +PQP ILKPRP WTGKQV 
Sbjct: 537  PLMGIVQDTLCGIYKICSRDVFLTKEQIMNILLWVPDWDGVIPQPAILKPRPRWTGKQVI 596

Query: 582  NLIIPKQINLFRTAAWHADNDKGILTAG-----DTLVRIEKGELLSGTLCKKTLGTSTGS 636
            ++++P  +NL R      D DK  L+       D  + +  GEL+ G   KKT+G + G 
Sbjct: 597  SMVLPAGLNLLR-----VDRDKAPLSEKFSPLTDGGLLVHSGELMYGMFSKKTVGATGGG 651

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            +IH I+ E GP+ A  F    Q +VNYWLL + FSIGIGDTI D  T++ I + +   K 
Sbjct: 652  IIHTIFNEYGPELAMNFFNGAQTVVNYWLLHHGFSIGIGDTIPDLATIQKIEEAVRVRKE 711

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
             V  +   A D +LEP PG  + E+FE+KV++ LN ARDEAG+  +KS  + NN   M  
Sbjct: 712  EVDEITASATDNTLEPLPGMNVRETFESKVSRALNNARDEAGTETEKSFKDLNNAVQMAR 771

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
            +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGL
Sbjct: 772  SGSKGSIINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGL 831

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
            TP EFFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGDV+QFLY
Sbjct: 832  TPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVVQFLY 891

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQ--EYIDDLKTIKE 932
            GEDG+D   IE+Q +D +K     F   +R + MD E   +PN + Q  E   D+    E
Sbjct: 892  GEDGLDGAHIENQRVDIIKCSDERFRDRYRIDLMDPERTLSPNVLEQATEIAGDI----E 947

Query: 933  LRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHP 992
            ++   D E ++L  DR      +A   +    LP+N++R++ +A+  F++     SD+HP
Sbjct: 948  VQKYLDEEWEQLLKDR-AFMRSVAKEDEEMMQLPINVQRILESAKTIFRIREGAISDLHP 1006

Query: 993  MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1052
             EV+  +  L +RL VV G+D +S EAQ++ATL F   LRS  A +R++ E+ L R AF+
Sbjct: 1007 AEVIPQIRALLDRLIVVRGDDVISREAQESATLLFKAQLRSRLAFRRLVVEYSLNRLAFQ 1066

Query: 1053 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1112
             V+G IESRF +++  PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+E
Sbjct: 1067 HVLGAIESRFSKAMANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKE 1126

Query: 1113 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1172
            I+NVA  IKTPS++V+  P     KE  K ++  +E+T+LRSVTEATE++YDPD   T+I
Sbjct: 1127 ILNVATHIKTPSMTVYQDPSRAMDKESVKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVI 1186

Query: 1173 EEDVEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDD 1230
            E D + V+SY+ +P ED+A +    S WLLRI L+R  ++DK L++  VA KI   +  D
Sbjct: 1187 EADRDMVESYFIIP-EDVADDSSHQSKWLLRIILSRPKLLDKSLTVQDVAMKIKDAYPQD 1245

Query: 1231 LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLA 1290
            +  IF+D+NAD+ ++RIR + D   K + +D+  E DV LKK+ES++L  + LRGV  + 
Sbjct: 1246 IAVIFSDNNADEQVIRIRQIQDS--KQDDDDDDTEYDVTLKKLESHLLDTLTLRGVAGIE 1303

Query: 1291 V------------------------MCHE-----------------DVDARRTTSNHLIE 1309
                                     +C E                  VD  RT SN  IE
Sbjct: 1304 RAFINEKSRVRVLEDGSLYQSAEDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQFIE 1363

Query: 1310 IIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1369
            I+EV GIEA R ALL EL  V++FDGSYVN+RHLA+L D MT RG LMA+TRHGINR DT
Sbjct: 1364 ILEVFGIEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADT 1423

Query: 1370 GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI 1429
            G +MRCSFEETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+  +YL+ +ML   +
Sbjct: 1424 GALMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQDMLMGVV 1483

Query: 1430 ELQLPSYMEGLEFGMTPARSPV-SGTPYHDGMMSPGYLFS--PNLRLSPVTDAQFSPYVG 1486
                    +G       A +P  S +P  D M    Y+ S  P+   SP+  A      G
Sbjct: 1484 SSNAGLMTDGKGLLGDGAATPYDSSSPLRDNM----YIGSPDPDSNFSPIRQAGSETPAG 1539

Query: 1487 GMAFSPTS-SPGYSPSSP-----GYSPSSP-GYSPTSPGYSPTSPGYSPTSPGYSPTSPT 1539
               + P+  S G+SP        GYSP+SP   SPTSP YSP+S GYSPTSPG S TSP 
Sbjct: 1540 FTEYQPSGFSGGFSPHGARSPGGGYSPTSPFNTSPTSPRYSPSS-GYSPTSPGMSITSPR 1598

Query: 1540 YSPSSPGYSPTSPAYSPTSPSYSPTSPSY--SPTSPSYSPTSPSY--------------- 1582
            +  SSPG+SP SPA++PTSP+YSPTSP Y  SPTSPSYSPTSP +               
Sbjct: 1599 FM-SSPGFSPASPAFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFS 1657

Query: 1583 ------SPTSPSYSPTSPSYSPTSPSY----SPTSPAYSPTSPAYSPTSP-AYSPTSPSY 1631
                  SPTSPSYSPTSP+   ++  +    SPTSP Y+PTSP +SPTSP  YSPTSP++
Sbjct: 1658 PASPAFSPTSPSYSPTSPALGISTGRHLSPTSPTSPKYTPTSPGWSPTSPETYSPTSPNF 1717

Query: 1632 --SPTSPSYSPTSPSYSPTSPSYSPTSP 1657
              SPTSP   PTSP YSPTSP+++PTSP
Sbjct: 1718 SGSPTSPG-GPTSPGYSPTSPTFNPTSP 1744



 Score =  148 bits (373), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 114/223 (51%), Positives = 144/223 (64%), Gaps = 26/223 (11%)

Query: 1574 SYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPA--YSPTSP-AYSPTSPAYSPTSP 1629
            ++SP   + S T   ++   PS +S     +   SP   YSPTSP   SPTSP YSP+S 
Sbjct: 1525 NFSPIRQAGSETPAGFTEYQPSGFSGGFSPHGARSPGGGYSPTSPFNTSPTSPRYSPSS- 1583

Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY--SPTSPSYSPTSPTY 1687
             YSPTSP  S TSP +  +SP +SP SP+++PTSPAYSPTSPGY  SPTSPSYSPTSP +
Sbjct: 1584 GYSPTSPGMSITSPRFM-SSPGFSPASPAFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGF 1642

Query: 1688 SPTSPSYNPQSAKY----------SPSLAYSPSSPRLSPA-----SPYSPTSPNYSPTSS 1732
            SPTSPSY+P S  +          SPS  YSP+SP L  +     SP SPTSP Y+PTS 
Sbjct: 1643 SPTSPSYSPTSPSFSPASPAFSPTSPS--YSPTSPALGISTGRHLSPTSPTSPKYTPTSP 1700

Query: 1733 SYSPTSP-SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
             +SPTSP +YSP+SP +S S     G  +P YSP+SP ++P++
Sbjct: 1701 GWSPTSPETYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFNPTS 1743



 Score =  106 bits (265), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/216 (41%), Positives = 120/216 (55%), Gaps = 45/216 (20%)

Query: 1602 SYSPTSPAYSPTSPAYSPTSPA-YSPTSPSYSPTSPS--YSPTSP-SYSPTSPSYSPTSP 1657
            ++SP   A S T   ++   P+ +S     +   SP   YSPTSP + SPTSP YSP+S 
Sbjct: 1525 NFSPIRQAGSETPAGFTEYQPSGFSGGFSPHGARSPGGGYSPTSPFNTSPTSPRYSPSS- 1583

Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
             YSPTSP  S TSP +  +SP +SP SP ++PTSP+Y+P S    P    SP+SP     
Sbjct: 1584 GYSPTSPGMSITSPRFM-SSPGFSPASPAFAPTSPAYSPTS----PGYQQSPTSP----- 1633

Query: 1718 SPYSPTSPNYSP---------------------TSSSYSPTSPSYSPSSPTY-SPSSPYN 1755
              YSPTSP +SP                     TS SYSPTSP+   S+  + SP+SP  
Sbjct: 1634 -SYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGISTGRHLSPTSPT- 1691

Query: 1756 AGGGNPDYSPSSPQYSPSA--GYSPSAPGYSPSSTS 1789
                +P Y+P+SP +SP++   YSP++P +S S TS
Sbjct: 1692 ----SPKYTPTSPGWSPTSPETYSPTSPNFSGSPTS 1723



 Score = 70.5 bits (171), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 75/138 (54%), Gaps = 27/138 (19%)

Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
            ++SP   A S T  G++   PS           S  ++P  A+ SP   YSP+SP  +  
Sbjct: 1525 NFSPIRQAGSETPAGFTEYQPS---------GFSGGFSPHGAR-SPGGGYSPTSPFNT-- 1572

Query: 1718 SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GY 1776
               SPTSP YSP SS YSPTSP  S +SP +  S         P +SP+SP ++P++  Y
Sbjct: 1573 ---SPTSPRYSP-SSGYSPTSPGMSITSPRFMSS---------PGFSPASPAFAPTSPAY 1619

Query: 1777 SPSAPGYSPSSTS-QYTP 1793
            SP++PGY  S TS  Y+P
Sbjct: 1620 SPTSPGYQQSPTSPSYSP 1637


>gi|210075525|ref|XP_501909.2| YALI0C16566p [Yarrowia lipolytica]
 gi|199425290|emb|CAG82229.2| YALI0C16566p [Yarrowia lipolytica CLIB122]
          Length = 1750

 Score = 1679 bits (4347), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 862/1601 (53%), Positives = 1110/1601 (69%), Gaps = 102/1601 (6%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTID 61
            +FPYS A +  V  VQFG+LSP+E++ MSV +IE  ET +  R +P+ GGL+DPRLGTID
Sbjct: 5    QFPYSSAPLRTVEEVQFGLLSPEEVKAMSVAKIEFPETMDETRQRPRVGGLNDPRLGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R  KC+TC   MAECPGHFGH+ELAKP+FHIGF+  +  I  SVCF+C K+L DE++ +F
Sbjct: 65   RNFKCQTCGEGMAECPGHFGHIELAKPVFHIGFIAKIKKICESVCFHCGKVLLDENNKQF 124

Query: 122  KQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD-GEEPLKKNKGGCGAQQPKLTI 180
             QA++IR+PK R   +   CK K  CE     DVP +D G   +K + GGCG  QP +  
Sbjct: 125  AQAIRIRDPKRRFNAVWSLCKTKMVCE----TDVPTEDDGSGVVKHSHGGCGNIQPTVRR 180

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            +G+K+   +K + K  DD    PE    K+ LT   +L V K IS EDCQ LGLN  YAR
Sbjct: 181  DGLKLWGTWK-RGKNGDDMGDSPE----KRLLTPAEILNVFKHISSEDCQRLGLNEDYAR 235

Query: 241  PDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            P+W+I+  LP+PPP            R  DDLT++LA I++ N N++R E+ GAPAH+++
Sbjct: 236  PEWLIITTLPVPPPPVRPSIAINDTARGEDDLTYKLADILKANANVQRCEQEGAPAHVVN 295

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            EF  LLQ+H+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSAR
Sbjct: 296  EFESLLQYHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSAR 355

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVIT DP + +DQ+GVP SIA  LTYPE VTP+NI +L E V  GP+  PG   AKY+IR
Sbjct: 356  TVITGDPNLELDQVGVPRSIARTLTYPEIVTPFNIHKLTEYVRNGPNEHPG---AKYVIR 412

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D G+R+DLRY K++ D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+++MPYST
Sbjct: 413  DTGERIDLRYHKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVRVMPYST 472

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQSN+PVMGIVQDT
Sbjct: 473  FRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLQIVSPQSNKPVMGIVQDT 532

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L G RK+T RD+FI+ D+ MNIL W  ++DG VP P ILKP+PLWTGKQ+ ++ IPK I+
Sbjct: 533  LCGVRKMTIRDSFIDYDMVMNILFWIPNWDGVVPTPAILKPKPLWTGKQMVSMCIPKGIH 592

Query: 591  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
            L R      D+   I    D  + I  G+++ G + KKT+G + G L+H I  E G    
Sbjct: 593  LQRF-----DDQNPITCPKDNGMYIIDGQIMWGVVDKKTIGATGGGLVHTIMREKGSAVC 647

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
              F G  Q +VN+WLL   FSIGIGDTIAD+ TM  + +TI +AK  VK +I +A   +L
Sbjct: 648  CNFFGTIQKVVNFWLLHYGFSIGIGDTIADSATMRDVTETIEEAKKKVKEIILEAHANTL 707

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
              E G TM ESFE+ V++VLN ARD AG SA+ SL + NN+K MV AGSKGSFINISQM+
Sbjct: 708  TAEAGMTMRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVAGSKGSFINISQMS 767

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQ VEGKR+PFGF DRTLPHF KDDY PES+GF+ENSYLRGLTPQEFFFHAM GRE
Sbjct: 768  ACVGQQMVEGKRVPFGFADRTLPHFCKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGRE 827

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRLVKA+ED+MV+YDGTVRNSLGDVIQF+YGEDG+D   +E QT
Sbjct: 828  GLIDTAVKTAETGYIQRRLVKALEDVMVQYDGTVRNSLGDVIQFVYGEDGLDGAQVEKQT 887

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            +D++      F++  R+++D  N     +  E  +D+    E++ V D E  +L  DR  
Sbjct: 888  VDTIPGSDESFER--RYKIDLMNPKTKPLNIESGNDIVGDVEVQRVLDEEYNQLLTDRRL 945

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L  E+ T+GD +WPLPVN++R++ N+Q+ F VD  + SD+   E+VE V  L +RL +V 
Sbjct: 946  LREEVFTNGDHNWPLPVNIRRVVQNSQRIFNVDKSKVSDLTIPEIVEGVQSLCKRLTIVR 1005

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+  L+ EAQ+NAT+ F  L+RS F +KRV++E+RL R AFEWV+GEIE++F +S+V PG
Sbjct: 1006 GDSSLAKEAQENATMLFQCLVRSRFPTKRVIEEYRLNRAAFEWVMGEIETQFAKSVVHPG 1065

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTP+L+V+L+
Sbjct: 1066 EMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVYLE 1125

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            P V +  E+AK VQ A+E+T+L++VT ATE++YDPDP  T+IEED++ V +Y+ +PDE +
Sbjct: 1126 PSVAADIEKAKVVQSAIEHTSLKNVTAATEIYYDPDPRTTVIEEDIDTVDAYFSIPDETV 1185

Query: 1191 AP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
                +  SPWLLR+EL+R  M+DK+L+M+ VA+KI+  + +DL  ++++DNADKLI+R R
Sbjct: 1186 EATLDNQSPWLLRLELDRAKMLDKQLTMSQVAQKISSSYGEDLFVMWSEDNADKLIIRCR 1245

Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------------------ 1284
            ++ D  PK    D  AE+D  LK+IE +ML  ++LR                        
Sbjct: 1246 VVRD--PKTLEEDVDAEEDQMLKRIEGHMLDSISLRGIEGIDRVFMMEHKMSVPDEVTGD 1303

Query: 1285 ------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
                        G+NL  VM  + VD  RT SN  +E++ VLGIEA R AL  E+  VI+
Sbjct: 1304 YKTKMEWVLETDGINLAEVMAVDGVDPYRTYSNSFVEVLSVLGIEATRSALYREILNVIA 1363

Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
            FDGSYVNYRH+A+L D MT RG+LMAITRHGINR DTG +MRCSFEETV+ILL+AA  AE
Sbjct: 1364 FDGSYVNYRHMALLVDVMTSRGYLMAITRHGINRADTGALMRCSFEETVEILLEAAAVAE 1423

Query: 1393 SDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLP---SYMEGLEFGMTPARS 1449
             D  RGV+ENIMLGQLAP+GTG+  + L+++ L       LP   S   G+  G      
Sbjct: 1424 LDDCRGVSENIMLGQLAPLGTGNFGVMLDEDQLST-----LPADYSKTAGIAAG------ 1472

Query: 1450 PVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSS 1509
                   H  M S     +P    SP  DA  +   G + FSP  + G    S G+S   
Sbjct: 1473 -------HGEMGSADGAATPYDSSSPAYDALQARGGGDVIFSPIGTSGAPEMSGGFSE-- 1523

Query: 1510 PGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
              Y     G   +   Y+PTSP  S     +  +SPG++ T
Sbjct: 1524 --YGGFGHGGDGSGSAYTPTSPFSS-----FGAASPGFAAT 1557


>gi|392574154|gb|EIW67291.1| hypothetical protein TREMEDRAFT_40446 [Tremella mesenterica DSM 1558]
          Length = 1808

 Score = 1679 bits (4347), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 895/1818 (49%), Positives = 1150/1818 (63%), Gaps = 196/1818 (10%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT-ERGKPKPGGLSDPRLGT 59
            M   FPYS A   +V+ +QFG++SP+EI+  SV +IEH E   E  + K GGL DPR+GT
Sbjct: 1    MTITFPYSSAPTRQVKEIQFGVMSPEEIKAFSVAKIEHPEVMDENNRQKVGGLMDPRMGT 60

Query: 60   IDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH 119
            IDR  KC+TC   MAECPGHFGH+ELA+P+FH GFM  V  I+  +CF+C K+  D  D 
Sbjct: 61   IDRNFKCQTCLEGMAECPGHFGHIELARPVFHGGFMVKVKKILECICFSCGKLRVDVRDP 120

Query: 120  KFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP---------LKKNKGG 170
                 ++   P++RLK I      +T CE  +  D  G    E          + K  GG
Sbjct: 121  MVANIVRRVKPQHRLKAIWAIASKRTSCETDERDDENGDATNEAEFQAEKELGVPKGHGG 180

Query: 171  CGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQ 230
            CGA QP    E +K++A+ K      D+     E     ++++   +  VL++I  ED  
Sbjct: 181  CGADQPLWRKEALKLMAKSKPSTTDKDESGSELE----IRSVSPGEIYNVLRKIPAEDLH 236

Query: 231  LLGLNPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQ 279
            ++GLN  YARP+WMIL V+P+PP  VRPS           DDLT++LA I++ +  +RR 
Sbjct: 237  VMGLNIDYARPEWMILTVMPVPPAAVRPSISIDGGAMRSEDDLTYKLAQILKTSATVRRL 296

Query: 280  ERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGN 339
            E  G P  ++ E   LLQFH+ATY DNE+ G P+  Q+SGRPIK+I +RLK KEGR+RGN
Sbjct: 297  EAEGVPPSVVDEQFDLLQFHVATYMDNEIAGLPQDMQKSGRPIKAIRARLKGKEGRMRGN 356

Query: 340  LMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 399
            LMGKRVDFSARTVIT DP + +DQ+GVP SIA+ LTYPE VTPYNI  L+ LV  GP   
Sbjct: 357  LMGKRVDFSARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPSTY 416

Query: 400  PGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM 459
            PG   A+Y ++D G+R+DL+Y K      L+ G+ VERHL DGDFVLFNRQPSLHKMS+M
Sbjct: 417  PG---ARYYVKDTGERIDLKYRKSGEPISLQFGWIVERHLKDGDFVLFNRQPSLHKMSMM 473

Query: 460  GHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQS 519
             HR+K+M YSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ ++  VP+ I+SPQ+
Sbjct: 474  CHRVKLMNYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQIAWVPRQIISPQA 533

Query: 520  NRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQ 579
            N+PVMGIVQDTL G RK T RD + +     NIL+W   +DG +P P ILKP+P+WTGKQ
Sbjct: 534  NKPVMGIVQDTLCGIRKFTLRDNYCDWKQVQNILLWLPGWDGTIPTPAILKPKPMWTGKQ 593

Query: 580  VFNLIIPKQINL-FRTAAWHADNDK-GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSL 637
            + ++ IPK IN+ F+      +N+K   +   D  V I+ GE++ GT+ K   G++   L
Sbjct: 594  LMSMTIPKGINITFK------NNEKPSPIDITDENVLIDNGEIIHGTIVKNMAGSANNGL 647

Query: 638  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNN 697
            +HVI+ E+G  AAR F    Q +VN+WLL   FS+GIGDTI D  TM  I + + +AK  
Sbjct: 648  VHVIFRELGHVAARDFFSACQMMVNFWLLHYGFSVGIGDTIVDTATMAGITNRMVEAKEA 707

Query: 698  VKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTA 757
            V+ LI +A+   ++P+PG T+ E+ E  +   LN ARD  G +AQ +L E NN+K MV +
Sbjct: 708  VQRLIAEAEANRMKPKPGMTIRETLEAGIATELNKARDWTGKTAQDNLKEDNNVKQMVVS 767

Query: 758  GSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLT 817
            G+KGSFINISQMT  VGQQ VEGKRI FGF  RTLPHF KDDYGPESRGFVENSYLRGLT
Sbjct: 768  GAKGSFINISQMTGVVGQQFVEGKRINFGFKHRTLPHFPKDDYGPESRGFVENSYLRGLT 827

Query: 818  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 877
            PQEF+FHAMGGREGLIDTAVKT+ETGYIQRRLVKAMED+ V YDGTVRNS GDV+QFLYG
Sbjct: 828  PQEFWFHAMGGREGLIDTAVKTAETGYIQRRLVKAMEDLKVAYDGTVRNSTGDVVQFLYG 887

Query: 878  EDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM--------DEENWNPNYMLQEYIDDLKT 929
            EDGMD   +E Q+ D +++    F++ ++ ++         E+   P       ID  K+
Sbjct: 888  EDGMDGAAMEKQSFDIIRLSDRAFERRYKIDVFGGPGAGFGEKTLAPG------ID--KS 939

Query: 930  IKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSD 989
               L+++ D E ++L  DR  L   I   G+ S PLP N++R+I N+Q+ F V     SD
Sbjct: 940  SASLQNLLDDEYRQLREDRQLLRQYIFPDGNPSHPLPANIQRIIQNSQQLFNVTVHTVSD 999

Query: 990  MHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTRE 1049
            + P+ ++E    L +RL +V G+D  S   Q NATL FNIL+RS  A++R+L+EH LTRE
Sbjct: 1000 LDPVHLIEMRKGLCDRLVIVRGDDKFSKIHQHNATLLFNILVRSHLATRRILEEHHLTRE 1059

Query: 1050 AFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPR 1109
            AFEWVIGEIE  F +++  P EM+G +AAQSIGEPATQMTLNTFHYAGV++K+VT GVPR
Sbjct: 1060 AFEWVIGEIEQIFNKAVCDPAEMVGTLAAQSIGEPATQMTLNTFHYAGVASKSVTGGVPR 1119

Query: 1110 LREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMG 1169
            L+EIINVA  I+TP+L+V+L    + T++ A  +   L YT LR +T + E++YDP    
Sbjct: 1120 LKEIINVAVNIRTPALNVYLDREYSQTEKAAHQIMRKLTYTRLRDITASVEIFYDPKLDS 1179

Query: 1170 TIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDD 1229
            T IEED +FV +++ +PDEDI  E+ SPWLLR+EL+R  +++    M+ V   I      
Sbjct: 1180 TDIEEDKDFVDAFFAIPDEDIKLEQHSPWLLRLELDRAKVLEGGYEMSQVVNAIVDTVGK 1239

Query: 1230 DLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMAL------ 1283
            D+  I ++DNA+KLI+RIR+++DE    +L     E+D+FLKKIE  +L  + L      
Sbjct: 1240 DVFVIHSEDNAEKLIIRIRVVSDEKEDDQL---IGEEDIFLKKIEGTLLDHVELGGITGI 1296

Query: 1284 -----------------------------RGVNLLAVMCHEDVDARRTTSNHLIEIIEVL 1314
                                          G+NL  V+  + VDA RT SN+  E+ + L
Sbjct: 1297 QRVFISEGKQTVLSQQGEYDQEREWFLETDGINLKEVLAVDGVDAVRTYSNNCYEVYQTL 1356

Query: 1315 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
            GIEA R AL  EL  VI   GSYVNYRHLA+LCD M  +G LM+ITRHGINR D G + R
Sbjct: 1357 GIEAGRNALFKELNGVIEMGGSYVNYRHLALLCDLMCSKGQLMSITRHGINRTDAGALSR 1416

Query: 1375 CSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLP 1434
             SFEETV+ILL+AA   + D   GV EN++LGQ+AP+GTG   + L+ EMLK+ I     
Sbjct: 1417 ASFEETVEILLEAAAVGDVDDCHGVAENVLLGQIAPMGTGAFDVSLDLEMLKDVI----- 1471

Query: 1435 SYMEGLEFGMTPARSPVS---GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFS 1491
                         R PV          G M+PG   +P   LSP+ + Q S  VG  AFS
Sbjct: 1472 ----------VDHRLPVQNMMAAGVLSGGMTPGGAMTPYDALSPMWNGQGS--VGAAAFS 1519

Query: 1492 PTSSP------------------------------------GYSPSSPGYSPSSPGYSPT 1515
            P  +                                     GYSP+SP ++ +SP YSP+
Sbjct: 1520 PMQTSNNEESGGFNYMGYGMSPMQGGLSPGGGGGYSPSSPTGYSPTSP-FAITSPTYSPS 1578

Query: 1516 SP-------------------GYSPTSPGYSPTSPGYSPTSPTYSPSSP----------- 1545
            SP                   G + TSP YSP+SP YSPTSP YSP+SP           
Sbjct: 1579 SPYQGNAGSASPWIPRSSTNGGLNITSPAYSPSSPQYSPTSPMYSPASPKFSPSSPTFSP 1638

Query: 1546 ---GYSPTSPAY--------------SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1588
                YSP SPAY              SP SP+YSPTSP    TSP YSPTSP YSP SP+
Sbjct: 1639 SSPNYSPASPAYGGGGGGGLARNSPFSPASPAYSPTSP-MGITSPRYSPTSPKYSPASPA 1697

Query: 1589 YSPTSPSYSPTSPS-YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
            +SPTSP YSPTSP+ +  TSP YSP SP +SPTSP YSPTSP YSP SP++SPTSP+YSP
Sbjct: 1698 FSPTSPVYSPTSPAPFQATSPRYSPNSPTFSPTSPVYSPTSPVYSPASPAFSPTSPAYSP 1757

Query: 1648 TSPSYSPTSPSYSPTSPA 1665
             SP+YSP SP+YSPTSPA
Sbjct: 1758 ASPAYSPNSPAYSPTSPA 1775



 Score =  107 bits (266), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 77/168 (45%), Positives = 105/168 (62%), Gaps = 11/168 (6%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
            YSPTSP ++ TSP+YSP+SP Y   + S SP  P  S T+ G + TSP+YSP+SP YSPT
Sbjct: 1562 YSPTSP-FAITSPTYSPSSP-YQGNAGSASPWIPR-SSTNGGLNITSPAYSPSSPQYSPT 1618

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSP 1750
            SP Y+P S K+SPS      S     +  YSP SP Y          +  +SP+SP YSP
Sbjct: 1619 SPMYSPASPKFSPSSPTFSPS-----SPNYSPASPAYGGGGGGGLARNSPFSPASPAYSP 1673

Query: 1751 SSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTPQTNR 1797
            +SP   G  +P YSP+SP+YSP++  +SP++P YSP+S + +   + R
Sbjct: 1674 TSPM--GITSPRYSPTSPKYSPASPAFSPTSPVYSPTSPAPFQATSPR 1719



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 52/83 (62%), Gaps = 14/83 (16%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY--------- 1540
            FSPTS P YSP+SP YSP+SP +SPTSP YSP SP YSP SP YSPTSP           
Sbjct: 1727 FSPTS-PVYSPTSPVYSPASPAFSPTSPAYSPASPAYSPNSPAYSPTSPAAQGSNGQPQT 1785

Query: 1541 --SPSSPGYSPTSPAYSPTSPSY 1561
               P+  G+  TS  Y  TSPS+
Sbjct: 1786 NGQPARKGWG-TSGGYG-TSPSW 1806


>gi|242011894|ref|XP_002426678.1| predicted protein [Pediculus humanus corporis]
 gi|212510849|gb|EEB13940.1| predicted protein [Pediculus humanus corporis]
          Length = 1885

 Score = 1678 bits (4346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 875/1628 (53%), Positives = 1119/1628 (68%), Gaps = 119/1628 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGILSPDEIR+MSV    I++ ET E G+PK GGL DPR G +DR  +
Sbjct: 6    SKAPLRSVKRVQFGILSPDEIRRMSVTDGGIKYPETYEGGRPKIGGLMDPRQGVVDRMSR 65

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C+TC  NM ECPGHFGH++LAKP+FH+GF+   + I+R VCF CSK+L   ++ K K+ +
Sbjct: 66   CQTCAGNMTECPGHFGHIDLAKPVFHVGFLTKTIKILRCVCFFCSKLLVSPNNAKIKEIV 125

Query: 126  -KIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP-----LKKNKGGCGAQQPKL 178
             K R  P+ RL  + D CK K  CEGGDE+D+   + + P      K   GGCG  QP +
Sbjct: 126  TKSRGQPRKRLTFVYDLCKGKNICEGGDEMDITKDNADNPDNSKDKKGGHGGCGRYQPNI 185

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
               G+ + AE+K     N+D +      E+K  L+AERV  +LK I+DE+C +LG++PK+
Sbjct: 186  RRTGLDLTAEWK---HTNEDNQ------EKKIALSAERVWEILKHITDEECLILGMDPKF 236

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARPDWM++ VLP+PP  VRP+          DDLTH+LA II+ N  L R E+ GA AHI
Sbjct: 237  ARPDWMLVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLADIIKANNELIRNEQAGAAAHI 296

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ISE  ++LQFH+AT  DN++PG PRA Q+SG+P+K++ +RLK KEGRIRGNLMGKRVDFS
Sbjct: 297  ISENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKALKARLKGKEGRIRGNLMGKRVDFS 356

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVITPDP + IDQ+GVP SIA NLT+PE +TP+NI++++ELV  G    PG   AKYI
Sbjct: 357  ARTVITPDPNLRIDQVGVPRSIAQNLTFPEIITPFNIDKMQELVRRGNSQYPG---AKYI 413

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IRD+G+R+DLR+  + SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+
Sbjct: 414  IRDNGERIDLRFHPRPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPW 473

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  L + P+ I++PQ+N+PVMGIVQ
Sbjct: 474  STFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHVTPRQIITPQANKPVMGIVQ 533

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL   RK+TKRD F+EK+  MNILM+   +DGK+PQP ILKP+PLWTGKQVF+LIIP  
Sbjct: 534  DTLTAVRKMTKRDVFLEKEQMMNILMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGN 593

Query: 589  INLFRTAAWHADN-DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
            +N+ RT + H D  D G                  G   +KTLGTS GSL+H+   E+G 
Sbjct: 594  VNMIRTHSTHPDEEDDGPYNCCGAR------RTYYGNFVQKTLGTSAGSLLHICMLELGH 647

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A +
Sbjct: 648  EVCGQFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHN 707

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 708  MELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 767

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMG
Sbjct: 768  QVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMG 827

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E
Sbjct: 828  GREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVE 887

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
             QTL ++K+    F+K FRF+   E +      +  + +L    E+    + E  +L+ D
Sbjct: 888  FQTLPTIKLSNKAFEKRFRFDATNERYLRRIFNENILKELMGSGEVISYLEKEWDQLQKD 947

Query: 948  RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1007
            R  L  +I  SG++   LP NL+R+IWN QK F ++ R P+D+ P+ V+E V  L ++  
Sbjct: 948  REAL-RQIFPSGENKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIEGVRDLLQKCV 1006

Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            +V GED LS +A +NATL F  L+RST  +K V ++ RL+ EAFEW+IGEIE+RF Q+  
Sbjct: 1007 IVAGEDHLSKQANENATLLFQCLVRSTLCTKCVSEDMRLSTEAFEWLIGEIETRFQQAQC 1066

Query: 1068 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1127
            APGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+V
Sbjct: 1067 APGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTV 1126

Query: 1128 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1187
            FL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+IEED EFV  YYEMPD
Sbjct: 1127 FLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIEEDQEFVTVYYEMPD 1186

Query: 1188 EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1247
             D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LR+
Sbjct: 1187 FD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRL 1244

Query: 1248 RIMNDE--APKGELNDESAEDDVFLKKIESNMLTEMALRGV------------------- 1286
            RIMN++      E N +  EDD+FL+ IE+NML++M L+G+                   
Sbjct: 1245 RIMNNDEKVTDEEENQDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQNDSKKRI 1304

Query: 1287 ---------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLD 1325
                                 +L+ V+   DVD  RT SN + EI  VLGIEAVR+++  
Sbjct: 1305 VITETGEFKAIAEWLLETDGTSLMKVLSERDVDPVRTYSNDICEIFSVLGIEAVRKSVEK 1364

Query: 1326 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1385
            E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+
Sbjct: 1365 EMNQVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLM 1424

Query: 1386 DAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFG-- 1443
            DAA  AE D +RGV+ENI++GQL  +GT  C   +   M   +I   + S + G+ FG  
Sbjct: 1425 DAASHAELDPMRGVSENIIMGQLPRMGTDKCKAGIEIPM---SIGHGMMSSV-GMMFGNA 1480

Query: 1444 MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVG-GMAFSPTSSPGYSPSS 1502
            +TP+ SP   TP++ G  +P Y+            + +SP+ G GM     S      S 
Sbjct: 1481 VTPSMSP-QMTPWNQG-ETPAYV------------SAWSPHAGSGMTPGGPSFSPSGSSD 1526

Query: 1503 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG-----YSPTSPAYSPT 1557
                      S  SPGYSP SP    +     P++  Y PS  G     YSP+SPA++PT
Sbjct: 1527 A---------SGLSPGYSPWSP-QPGSPSSPGPSNSPYVPSPGGGMSPSYSPSSPAFAPT 1576

Query: 1558 SPSYSPTS 1565
            SPS +PTS
Sbjct: 1577 SPSMTPTS 1584



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/148 (74%), Positives = 124/148 (83%), Gaps = 2/148 (1%)

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
            +SP YSP SPSYSP SP YSPTSPSYSPTSPSY+  SP Y+PTSP YSPTSP+YSPTSP+
Sbjct: 1736 SSPRYSPASPSYSPGSPKYSPTSPSYSPTSPSYASVSPQYTPTSPQYSPTSPTYSPTSPS 1795

Query: 1610 YSPTSPAYSP-TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
            YSP+SP+++P  S  YSPTSP YSPTS SYSP SP YSP+S  YSPTSP+Y+PTSP YS 
Sbjct: 1796 YSPSSPSHTPGASTRYSPTSPKYSPTSLSYSPASPQYSPSSSKYSPTSPTYTPTSPDYSA 1855

Query: 1669 TSPGYSPTSP-SYSPTSPTYSPTSPSYN 1695
            +SP YSPT P SYSPTSPTYSPTSP Y+
Sbjct: 1856 SSPTYSPTGPPSYSPTSPTYSPTSPEYD 1883



 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 97/163 (59%), Positives = 117/163 (71%), Gaps = 20/163 (12%)

Query: 1613 TSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
            +SP YSP SP+YSP SP YSPTSPSYSPTSPSY+  SP Y+PTSP YSPTSP YSPTSP 
Sbjct: 1736 SSPRYSPASPSYSPGSPKYSPTSPSYSPTSPSYASVSPQYTPTSPQYSPTSPTYSPTSPS 1795

Query: 1673 YSPTSPSYSPTSPT-YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS 1731
            YSP+SPS++P + T YSPTSP Y+P S      L+YSP+SP+ SP+S     +      S
Sbjct: 1796 YSPSSPSHTPGASTRYSPTSPKYSPTS------LSYSPASPQYSPSSSKYSPT------S 1843

Query: 1732 SSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
             +Y+PTSP YS SSPTYSP+ P       P YSP+SP YSP++
Sbjct: 1844 PTYTPTSPDYSASSPTYSPTGP-------PSYSPTSPTYSPTS 1879


>gi|324120522|dbj|BAJ78652.1| RNA polymerase II largest subunit [Mnais pruinosa pruinosa]
          Length = 1557

 Score = 1678 bits (4345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 839/1500 (55%), Positives = 1067/1500 (71%), Gaps = 95/1500 (6%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            S A +  V+ VQFGI+SPDEIR+MSV    I   ET E G+PK GGL DPR G IDR  +
Sbjct: 7    SKATIRTVKRVQFGIISPDEIRRMSVTDGGIRFSETMEGGRPKLGGLMDPRQGVIDRLSR 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
            C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L   ++ K K+  
Sbjct: 67   CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPNNPKIKEIV 126

Query: 125  LKIR-NPKNRLKKILDACKNKTKCEGGDEIDV-------PGQDGEEPLKKNKGGCGAQQP 176
            +K +  P+ RL  + D CK K  CEGGDE+D+       PG  G++  K   GGCG  QP
Sbjct: 127  MKSKGQPRKRLTFVYDLCKGKNICEGGDEMDIQKDGVDDPG-GGQQNRKAGHGGCGRYQP 185

Query: 177  KLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
             +   G+ + AE+K     N+D +      E+K  L+AERV  + K I+DE+C ++G++P
Sbjct: 186  SIRRAGLDLTAEWK---HVNEDSQ------EKKIALSAERVWEIFKHITDEECFIMGMDP 236

Query: 237  KYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPA 286
            KYARPDWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  L R E+ GA A
Sbjct: 237  KYARPDWMIVTVLPVPPLSVRPAVVMYGSARNQDDLTHKLSDIIKSNNELLRNEQAGAAA 296

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            H++SE  ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVD
Sbjct: 297  HVLSENIKMLQFHVATLVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVD 356

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ELV  G    PG   AK
Sbjct: 357  FSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPG---AK 413

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            YI+RD+G+R+DLR+  K SD HL+ GY+VERH+ DGD V+FNRQP+LHKMS+MGHR+K++
Sbjct: 414  YIVRDNGERIDLRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVL 473

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            P+STFR+NLSVTSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGI
Sbjct: 474  PWSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGI 533

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDTL   RK+TKRD F+EK+  MNILM    +DGK+PQP ILKP+PLWTGKQVF+LIIP
Sbjct: 534  VQDTLTAVRKMTKRDVFLEKEQMMNILMHLPIWDGKMPQPAILKPKPLWTGKQVFSLIIP 593

Query: 587  KQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
              +N+ RT + H D+ D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+  
Sbjct: 594  GNVNMIRTHSTHPDDEDDGPYCWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICM 653

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E+G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I
Sbjct: 654  LELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVI 713

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
            ++A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS
Sbjct: 714  QKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGS 773

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
             INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFF
Sbjct: 774  NINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFF 833

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+ 
Sbjct: 834  FHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLC 893

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTI----KELRDVFD 938
               +E Q L ++K+    F++ F+F+   E  N   +  E  D L+ +     ++    +
Sbjct: 894  GETVEFQNLPTIKLSNKAFERKFKFDPTNER-NLRRVFTE--DVLREVSGGSSDIIGALE 950

Query: 939  AEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
             E  +L  DR  L  +I  SGDS   LP NL+R+IWN QK F ++ R P+D+ P+ V++ 
Sbjct: 951  REWDQLVRDREAL-RQIFPSGDSKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQG 1009

Query: 999  VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            V  L  +  +V GED LS +A +NATL F  L+RST  +K V ++ RL+ EAFEW+IGEI
Sbjct: 1010 VQDLLTKCVIVAGEDALSKQANQNATLLFQCLVRSTLCTKCVSEDFRLSSEAFEWLIGEI 1069

Query: 1059 ESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK 1118
            E+RF Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++K
Sbjct: 1070 ETRFQQAQCQPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISK 1129

Query: 1119 KIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEF 1178
            K K PSL+VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EF
Sbjct: 1130 KPKAPSLTVFLTGAAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIGEDQEF 1189

Query: 1179 VKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDD 1238
            V  YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDD
Sbjct: 1190 VNVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINTGFGDDLNCIFNDD 1247

Query: 1239 NADKLILRIRIMNDEAPK-------GELNDESAEDDVFLKKIESNMLTEMALRGV----- 1286
            NA++L+LRIRIMN +  K        E + +  EDD+FL+ IE+NML++M L+G+     
Sbjct: 1248 NAERLVLRIRIMNSDENKFGGGGGDEEDSVDKMEDDMFLRCIEANMLSDMTLQGIEAISK 1307

Query: 1287 -----------------------------------NLLAVMCHEDVDARRTTSNHLIEII 1311
                                               +L+ V+   DVD  RT SN + EI 
Sbjct: 1308 VYMHLPQTDSKKRIVVTESGEFKAIAEWLLETDGTSLMRVLSERDVDPVRTFSNDICEIF 1367

Query: 1312 EVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP 1371
             VLGIEAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG 
Sbjct: 1368 SVLGIEAVRKSVEKEMNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGA 1427

Query: 1372 MMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL 1431
            +MRCSFEETVD+L+DAA  AE D +RGV+ENI++GQL  +GTG   L L+ +  +  IE+
Sbjct: 1428 LMRCSFEETVDVLMDAASHAEVDPMRGVSENIIMGQLPRLGTGAFDLLLDSDKCRGGIEI 1487


>gi|325090959|gb|EGC44269.1| RNA polymerase II largest subunit [Ajellomyces capsulatus H88]
          Length = 1747

 Score = 1678 bits (4345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 905/1779 (50%), Positives = 1183/1779 (66%), Gaps = 154/1779 (8%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTI 60
             +FPYS A++  ++ +QFG+LSP+EI++MSVV +E+ ET   +R +P+  GL+DPRLGTI
Sbjct: 4    VKFPYSKAQLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEQRQRPREKGLNDPRLGTI 63

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DR  +C TC   + +CPGHFGH+EL+ P+FHIGF+  +  ++ +VC NC KI A+  D K
Sbjct: 64   DRNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTTDQK 123

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK-------NKGGCGA 173
            + +AL+ R+PK R   I    K+   CE       P  D +EP  K       + GGCG 
Sbjct: 124  YLEALRFRDPKRRFDAIWRLSKDVLICEAD-----PSPDDDEPFAKEPSKPVRSHGGCGN 178

Query: 174  QQPKLTIEGMKMIAEYKAQRKKN--DDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQ 230
             QP++  EG+ ++  +K  + ++  DD + Q PE    K+ +T +  L + K IS+ED +
Sbjct: 179  IQPQIRKEGISLVGTWKPSKNRDMMDDMDVQQPE----KRQITPQMALNIFKTISEEDVR 234

Query: 231  LLGLNPKYARPDWMIL-------------QVLPIPPPPVRPSDDLTHQLAMIIRHNENLR 277
            L+GL+  YARP+WMI+              ++       R  DDLT++LA I+R N+N+ 
Sbjct: 235  LMGLSNDYARPEWMIITVLPVPPPPVRPSVLIGGSGSGQRGEDDLTYKLAEIVRANQNVT 294

Query: 278  RQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIR 337
            R E+ G+P H++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I  RLK KEGR+R
Sbjct: 295  RCEQEGSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGRLR 354

Query: 338  GNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPH 397
             NLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPE VTP+NI +L ELV+ GP 
Sbjct: 355  QNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGELVDNGPD 414

Query: 398  PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVERHLNDGDFVLFNRQPSLHKM 456
              PG   A+Y+IR+ G+R+DLR+ K     + L+ G++VERH+ DGD +LFNRQPSLHK 
Sbjct: 415  IHPG---ARYVIRNTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSLHKE 471

Query: 457  SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 516
            S+MGHRI++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L MVP  IVS
Sbjct: 472  SMMGHRIRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVS 531

Query: 517  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWT 576
            PQ N P+MGIVQDTL G  KI +RD F+ K+  MNIL+W  D+DG +PQP ILKPRP WT
Sbjct: 532  PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNILLWVPDWDGVIPQPAILKPRPRWT 591

Query: 577  GKQVFNLIIPKQINLFRTAAWHADNDKGILTA-----GDTLVRIEKGELLSGTLCKKTLG 631
            GKQ+ ++++P  +NL R      D DK  L+       D  + +  GEL+ G   KKT+G
Sbjct: 592  GKQMISMVLPPGLNLLR-----VDRDKAPLSEKFSPLADGGLLVHSGELMYGMFSKKTVG 646

Query: 632  TSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTI 691
             + G +IH I+ E GP+ A  F    Q +VNYWLL + FSIGIGDTI D  T+E I + +
Sbjct: 647  ATGGGVIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSIGIGDTIPDLATIEKIEEAV 706

Query: 692  SKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNL 751
               K  V  +   A D +LEP PG  + E+FE+KV++ LN ARDEAG+  +KS  + NN 
Sbjct: 707  RVRKEEVDEITASATDNTLEPLPGMNVRETFESKVSRALNNARDEAGTETEKSFKDLNNA 766

Query: 752  KAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENS 811
              M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENS
Sbjct: 767  VQMARSGSKGSIINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENS 826

Query: 812  YLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 871
            YLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGDV
Sbjct: 827  YLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDV 886

Query: 872  IQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQ--EYIDDL 927
            +QFLYGEDG+D   IE+Q +D +K     F   +R + MD +   +PN + Q  E   D+
Sbjct: 887  VQFLYGEDGLDGAHIENQRVDIIKCSDERFRDRYRVDLMDPDRTLSPNVLEQATEIAGDI 946

Query: 928  KTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP 987
                E++   D E ++L  DR  + + +A   +    LP+N++R++ +A+  F++     
Sbjct: 947  ----EVQKYLDEEWEQLLKDRAFMRS-VAKEDEEMMQLPINVQRILESAKTIFRIREGAI 1001

Query: 988  SDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLT 1047
            SD+HP EV+  V  L ERL VV G+D +S EAQ++ATL F   LRS  A +R++ E+ L 
Sbjct: 1002 SDLHPAEVIPQVRALLERLVVVRGDDVISREAQESATLLFKAQLRSRLAFRRLVVEYSLN 1061

Query: 1048 REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGV 1107
            R AF+ V+G IESRF +++  PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGV
Sbjct: 1062 RLAFQHVLGAIESRFSKAMANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGV 1121

Query: 1108 PRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDP 1167
            PRL+EI+NVA  IKTPS++V+  P     KE  K ++  +E+T+LRSVTE TE++YDPD 
Sbjct: 1122 PRLKEILNVATNIKTPSMTVYQDPSRAMDKESVKQLRSVVEHTSLRSVTETTEIYYDPDI 1181

Query: 1168 MGTIIEEDVEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQ 1225
              T+IE D + V+SY+ +P ED+A +  + S WLLRI L+R  ++DK L++  VA KI  
Sbjct: 1182 QSTVIEADRDMVESYFIIP-EDVADDSSRQSKWLLRIILSRPKLLDKSLTVQDVAMKIKD 1240

Query: 1226 EFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG 1285
             +  D+  IF+D+NAD+ ++RIR + D   K + +D+  E DV LKK+ES++L  + LRG
Sbjct: 1241 AYPQDIAVIFSDNNADEQVIRIRQVQDS--KQDDDDDDTEYDVTLKKLESHLLDTLTLRG 1298

Query: 1286 VNLLAV------------------------MCHE-----------------DVDARRTTS 1304
            V  +                          +C E                  VD  RT S
Sbjct: 1299 VAGIERAFINEKSRVRVLEDGSLHQSADDPLCKEWVLETSGSALGEVLTIPGVDTTRTYS 1358

Query: 1305 NHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGI 1364
            N  IEI+EV GIEA R ALL EL  V++FDGSYVN+RHLA+L D MT RG LMA+TRHGI
Sbjct: 1359 NQFIEILEVFGIEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGI 1418

Query: 1365 NRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEM 1424
            NR DTG +MRCSFEETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+  +YL+ +M
Sbjct: 1419 NRADTGALMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQDM 1478

Query: 1425 LKNAIELQLPSYMEGLEFGMTP--ARSPV-SGTPYHDGMMSPGYLFS--PNLRLSPVTDA 1479
            L   +       M     G+    A +P  S +P  D M    Y+ +  P+   SP+  A
Sbjct: 1479 LMGVVSSN-AGLMAADGKGLLSDGAATPYDSSSPLQDNM----YIGTPDPDSNFSPIRQA 1533

Query: 1480 QFSPYVGGMAFSPTS-SPGYSPSSP-----GYSPSSP-GYSPTSPGYSPTSPGYSPTSPG 1532
                  G   + P+  S G+SP        GYSPSSP   SPTSP YSP+S GYSPTSPG
Sbjct: 1534 GSETPAGFTEYQPSGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSS-GYSPTSPG 1592

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY--SPTSPSYSPTSPSY-------- 1582
             S TSP +  SSPG+SP SPA++PTSP+YSPTSPSY  SPTSPSYSPTSP +        
Sbjct: 1593 MSITSPRFM-SSPGFSPASPAFAPTSPAYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSYS 1651

Query: 1583 -------------SPTSPSYSPTSPSYS-PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1628
                         SPTSPSYSPTSP+    T    SPT    SPTSP Y+PTSP +SPTS
Sbjct: 1652 PTSPSFSPASPAFSPTSPSYSPTSPALGVSTGRHLSPT----SPTSPKYTPTSPGWSPTS 1707

Query: 1629 P-SYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSP 1664
            P +YSPTSP++  SPTSP   PTSP YSPTSP+++P SP
Sbjct: 1708 PETYSPTSPNFSGSPTSPG-GPTSPGYSPTSPTFNPISP 1745



 Score =  144 bits (364), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 103/234 (44%), Positives = 135/234 (57%), Gaps = 45/234 (19%)

Query: 1567 SYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPS--YSPTSP-AYSPTSPAYSPTSP 1622
            ++SP   + S T   ++   PS +S     +   SP   YSP+SP   SPTSP YSP+S 
Sbjct: 1526 NFSPIRQAGSETPAGFTEYQPSGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSS- 1584

Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY--SPTSPGYSPTSPSY 1680
             YSPTSP  S TSP +  +SP +SP SP+++PTSP+YSPTSP+Y  SPTSP YSPTSP +
Sbjct: 1585 GYSPTSPGMSITSPRFM-SSPGFSPASPAFAPTSPAYSPTSPSYQQSPTSPSYSPTSPGF 1643

Query: 1681 SP---------------------TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
            SP                     TSP+YSPTSP+    + ++                SP
Sbjct: 1644 SPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGVSTGRH---------------LSP 1688

Query: 1720 YSPTSPNYSPTSSSYSPTSP-SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
             SPTSP Y+PTS  +SPTSP +YSP+SP +S S     G  +P YSP+SP ++P
Sbjct: 1689 TSPTSPKYTPTSPGWSPTSPETYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFNP 1742



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/230 (47%), Positives = 141/230 (61%), Gaps = 34/230 (14%)

Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP-AYSPTSPSYS 1632
            ++SP   + S T   ++   PS    S  +SP   A SP    YSP+SP   SPTSP YS
Sbjct: 1526 NFSPIRQAGSETPAGFTEYQPS--GFSGGFSPHG-ARSPGG-GYSPSSPFNTSPTSPRYS 1581

Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY--SPTSPTYSPT 1690
            P+S  YSPTSP  S TSP +  +SP +SP SPA++PTSP YSPTSPSY  SPTSP+YSPT
Sbjct: 1582 PSS-GYSPTSPGMSITSPRFM-SSPGFSPASPAFAPTSPAYSPTSPSYQQSPTSPSYSPT 1639

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS-----------SSYSPTSP 1739
            SP ++P S  YSP+      +     +  +SPTSP+YSPTS           S  SPTSP
Sbjct: 1640 SPGFSPTSPSYSPTSPSFSPA-----SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSP 1694

Query: 1740 SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY--SPSAGYSPSAPGYSPSS 1787
             Y+P+SP +SP+SP         YSP+SP +  SP++   P++PGYSP+S
Sbjct: 1695 KYTPTSPGWSPTSPET-------YSPTSPNFSGSPTSPGGPTSPGYSPTS 1737



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/216 (41%), Positives = 121/216 (56%), Gaps = 45/216 (20%)

Query: 1602 SYSPTSPAYSPTSPAYSPTSPA-YSPTSPSYSPTSPS--YSPTSP-SYSPTSPSYSPTSP 1657
            ++SP   A S T   ++   P+ +S     +   SP   YSP+SP + SPTSP YSP+S 
Sbjct: 1526 NFSPIRQAGSETPAGFTEYQPSGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSS- 1584

Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
             YSPTSP  S TSP +  +SP +SP SP ++PTSP+Y+P S    PS   SP+SP     
Sbjct: 1585 GYSPTSPGMSITSPRFM-SSPGFSPASPAFAPTSPAYSPTS----PSYQQSPTSP----- 1634

Query: 1718 SPYSPTSPNYSP---------------------TSSSYSPTSPSYSPSSPTY-SPSSPYN 1755
              YSPTSP +SP                     TS SYSPTSP+   S+  + SP+SP  
Sbjct: 1635 -SYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGVSTGRHLSPTSPT- 1692

Query: 1756 AGGGNPDYSPSSPQYSPSA--GYSPSAPGYSPSSTS 1789
                +P Y+P+SP +SP++   YSP++P +S S TS
Sbjct: 1693 ----SPKYTPTSPGWSPTSPETYSPTSPNFSGSPTS 1724



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 74/138 (53%), Gaps = 27/138 (19%)

Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
            ++SP   A S T  G++   PS           S  ++P  A+ SP   YSPSSP  +  
Sbjct: 1526 NFSPIRQAGSETPAGFTEYQPS---------GFSGGFSPHGAR-SPGGGYSPSSPFNT-- 1573

Query: 1718 SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GY 1776
               SPTSP YSP SS YSPTSP  S +SP +  S         P +SP+SP ++P++  Y
Sbjct: 1574 ---SPTSPRYSP-SSGYSPTSPGMSITSPRFMSS---------PGFSPASPAFAPTSPAY 1620

Query: 1777 SPSAPGYSPSSTS-QYTP 1793
            SP++P Y  S TS  Y+P
Sbjct: 1621 SPTSPSYQQSPTSPSYSP 1638


>gi|302696011|ref|XP_003037684.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
 gi|300111381|gb|EFJ02782.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
          Length = 1750

 Score = 1677 bits (4343), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 902/1733 (52%), Positives = 1155/1733 (66%), Gaps = 130/1733 (7%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTID 61
            +F YS A V KV+ VQFGILSP+EI+  SV +IE  E  + G  + K GG++DPR+GTID
Sbjct: 5    QFAYSAAPVRKVKEVQFGILSPEEIKANSVAKIEFPEINDEGTHRLKTGGVNDPRMGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R  KC+TC   M+ECPGHFGH+ELA+P+FH GF+  V  I+  +C NC K+ AD  D  F
Sbjct: 65   RNFKCQTCGEGMSECPGHFGHIELARPVFHPGFIVKVKKILECICVNCGKLKADISDPSF 124

Query: 122  KQALK-IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
               ++ +R+PK+RL  +   CK K  CE  D  +   +D EE  KK  GGCG  QP +  
Sbjct: 125  ADRIRHVRDPKHRLAAVWAYCKGKMMCETDDPKEEGQEDHEE--KKGHGGCGHIQPVIRK 182

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EG+KM  +YK  +  +D +++L  P E         V    K++S++D +LLGL+ +YAR
Sbjct: 183  EGLKMFVQYKKAKDDDDSEKRLIMPSE---------VYTTFKKMSEDDLRLLGLSEEYAR 233

Query: 241  PDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            P+WMIL V           + +     +  DDLT++L  II+ + N+RR E+ GAPAH++
Sbjct: 234  PEWMILTVLPVPPPPVRPSIAMDGGAQKSEDDLTYKLIEIIKASGNVRRCEQEGAPAHVV 293

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            +EF QLLQFH+ATY DN++ G P+A Q+SGRPIK+I +RLK KEGR+RGNLMGKRVDFSA
Sbjct: 294  NEFEQLLQFHVATYMDNDIAGIPQAMQKSGRPIKAIRARLKGKEGRLRGNLMGKRVDFSA 353

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVIT DP + +DQ+GVP SIA+NLT+PE VTPYNI+ L+ LV  GP   PG   A+Y++
Sbjct: 354  RTVITGDPNLELDQVGVPRSIAMNLTFPERVTPYNIDYLQTLVRNGPTTYPG---ARYVV 410

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD G+R+DLRY  K +D  L+ G+ VERHL DGD+VLFNRQPSLHKMS+M HR+K+MPYS
Sbjct: 411  RDTGERIDLRY-NKRADAFLQFGWIVERHLKDGDYVLFNRQPSLHKMSMMSHRVKLMPYS 469

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFRLNLSVT PYNADFDGDEMNMH+PQS ETRAE+ ++  VP+ IV+PQSN+PVMGIVQD
Sbjct: 470  TFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIVTPQSNKPVMGIVQD 529

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL G RK T RD F++ +   NIL+W   +DG VP P ILKP+PLWTGKQ+ +++IP+ I
Sbjct: 530  TLCGIRKFTLRDCFMDWNQVQNILLWVPSWDGSVPIPAILKPKPLWTGKQILSMVIPRGI 589

Query: 590  NLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
            N+ R +        G     D  + IE G+++ G + KKT+G S G LIHV++ E GP+A
Sbjct: 590  NIARKS-----EKGGSAPPADDGMFIENGDIMYGVVDKKTVGASQGGLIHVVFREKGPEA 644

Query: 650  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
             R      Q +VNYWL  N FSIGIGDTIA    M  I  TI + K  VK L   A    
Sbjct: 645  TRTLFTGLQQVVNYWLFHNGFSIGIGDTIAGPDVMAKITKTIDQQKEKVKELTADAYWDL 704

Query: 710  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
            L+P PG T+ E+FE+KVN  LN ARD+AG  AQ  L + NN+K MV AGSKGSFINISQM
Sbjct: 705  LKPMPGMTIRETFESKVNHELNKARDDAGKDAQDGLKDDNNVKQMVVAGSKGSFINISQM 764

Query: 770  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
            + CVGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTPQEFFFHAM GR
Sbjct: 765  SVCVGQQSVEGKRIPFGFRHRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMSGR 824

Query: 830  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
            EGLIDTAVKT+ETGYIQRRLVKA+ED+MV YDGTVRNSLGD++QF+YGEDGMD  +IE Q
Sbjct: 825  EGLIDTAVKTAETGYIQRRLVKALEDVMVCYDGTVRNSLGDLVQFIYGEDGMDGAFIERQ 884

Query: 890  TLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQ-EYIDDLKTIK--ELRDVFDAEVQKL 944
             +D+L M   E +K ++ ++ +  E+  P  +LQ   ID+L   +  +L++  + E ++L
Sbjct: 885  GVDTLLMGDREMEKKYKIDITDYGESRLPAGVLQVGLIDNLNQQEALDLQEKLNQEWEQL 944

Query: 945  EADRYQLATEIATSGD---SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
             ADR +L   +    D   +   LPVNL R+  NA + F +D R+PSD+HP  +V+ V  
Sbjct: 945  RADRDELRLYVFRGYDYRNAPQYLPVNLTRITQNAMQIFHIDRRKPSDLHPGYIVDQVRG 1004

Query: 1002 LQERLKVVPGED-PLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
            L ER+  V  ED   S EAQ N+   F +LLR+ FA+++VL     T++AF+W IGE+E+
Sbjct: 1005 LCERVSGVLREDNEFSREAQDNSARLFRMLLRAHFAARKVLTVWHFTQQAFDWAIGEVET 1064

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            +F QSL  PGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIINVA  I
Sbjct: 1065 KFNQSLANPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINVAANI 1124

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            KTP+ +++L P    ++  AK VQ  L +TTLR+VT A E+WYDPD   T+IEED E + 
Sbjct: 1125 KTPAHTIYLVPEKAQSRLGAKAVQEQLAFTTLRTVTAAVEIWYDPDTRNTVIEEDQEMIG 1184

Query: 1181 SYYEMPDED-IAPE-----KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCI 1234
            S++++ D D  +PE     + S WLLR+ L+R  M+D+K+ +  VA +I   F  DL  +
Sbjct: 1185 SFWDIADADPGSPEYEKYQRQSSWLLRLVLDRRAMIDRKVDVDYVANQIINNFKTDLVVM 1244

Query: 1235 FNDDNA-DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------- 1286
            ++ D + D +I+R R+++ E  K E   E  E+DVFL+++E+ ML  + LRGV       
Sbjct: 1245 WSQDASEDTMIIRCRVVSGEE-KTEDGLEDIEEDVFLRQLENTMLNSIVLRGVKGIDRVF 1303

Query: 1287 ----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEA 1318
                                        NL AVMC + VD  RT+SN+ +E+   LGIEA
Sbjct: 1304 LSEKDKTHINDDGTVGQEKEWVLETNGTNLKAVMCVDGVDYTRTSSNNCVEVFNTLGIEA 1363

Query: 1319 VRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE 1378
             R+++L EL+  I FDGSYVNYRH+A+LCD MT RG LMAITRHGINR+DTG +MRCSFE
Sbjct: 1364 GRQSVLKELKSCIEFDGSYVNYRHIALLCDLMTQRGTLMAITRHGINRSDTGALMRCSFE 1423

Query: 1379 ETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI--ELQLPSY 1436
            ETV+IL++AA   E D   GV EN+M GQ+AP+GTG   + L+  MLK+AI     +P+ 
Sbjct: 1424 ETVEILMEAAAVGEKDDCHGVAENVMFGQMAPMGTGAFDVALDINMLKDAIVDTHHMPT- 1482

Query: 1437 MEGLEFGMTPARSPVSGTPYHDG--MMSPGYLFSPNLRLSPV----TDAQFSPYVG--GM 1488
            + G + GMTP +  V+ TPY     M   G         SP+    ++     Y G  G 
Sbjct: 1483 LAG-DGGMTPGQ--VAMTPYDSNSPMWDQGMFKGEQAAFSPLAVNGSEEPSGAYGGLTGY 1539

Query: 1489 AFSPTSSPGYSPSSPGYSPS-----------SPGYSPTSPGYSPTSPGYSPTSPGYS-PT 1536
              SP  +  +SP  PGYSP+           +   SP   G SP       TSP     T
Sbjct: 1540 GQSPYGAGSFSPGRPGYSPTSPSYSPASPSFASAQSPFIGGASPFGASPYATSPFIGGAT 1599

Query: 1537 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY--------------SPTSPSY 1582
            SPTYSP+SP  + TSP+YSPTSP YSPTSPS+SPTSP Y              SPTSPS+
Sbjct: 1600 SPTYSPTSPALNLTSPSYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPSSPRYSPTSPSF 1659

Query: 1583 SPTSPS----YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY 1631
            SP SP      SPTSP YSPTSP  SP SP YSPTSPAYSP SPAYSPTSP+Y
Sbjct: 1660 SPASPRSPQMASPTSPKYSPTSPMASPASPRYSPTSPAYSPASPAYSPTSPAY 1712



 Score =  120 bits (302), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 131/283 (46%), Positives = 159/283 (56%), Gaps = 34/283 (12%)

Query: 1512 YSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT 1571
            + PT  G    +PG    +P Y   SP +      +     A+SP +      + S  P+
Sbjct: 1479 HMPTLAGDGGMTPGQVAMTP-YDSNSPMWDQGM--FKGEQAAFSPLA-----VNGSEEPS 1530

Query: 1572 SPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
                  T    SP  + S+SP  P YSPTSPSYSP SP+++    A SP     SP   S
Sbjct: 1531 GAYGGLTGYGQSPYGAGSFSPGRPGYSPTSPSYSPASPSFAS---AQSPFIGGASPFGAS 1587

Query: 1631 YSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT--- 1686
               TSP     TSP+YSPTSP+ + TSPSYSPTSP YSPTSP +SPTSP YSP SP+   
Sbjct: 1588 PYATSPFIGGATSPTYSPTSPALNLTSPSYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSP 1647

Query: 1687 -----------YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSY 1734
                       +SP SP     ++  SP   YSP+SP  SPASP YSPTSP YSP S +Y
Sbjct: 1648 SSPRYSPTSPSFSPASPRSPQMASPTSPK--YSPTSPMASPASPRYSPTSPAYSPASPAY 1705

Query: 1735 SPTSPSYSPSSPTYSPSSPY-NAGGGNPDYSPSSP---QYSPS 1773
            SPTSP+YSPSSPT+SPSSP  NA G N + S S+    Q SPS
Sbjct: 1706 SPTSPAYSPSSPTWSPSSPSQNANGQNQNGSSSTNNHYQASPS 1748



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 106/244 (43%), Positives = 129/244 (52%), Gaps = 38/244 (15%)

Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS--PTSPAYS 1625
            + PT       +P     +P Y   SP +      +     A+SP +   S  P+     
Sbjct: 1479 HMPTLAGDGGMTPGQVAMTP-YDSNSPMWD--QGMFKGEQAAFSPLAVNGSEEPSGAYGG 1535

Query: 1626 PTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTSP-GYSP--TSPSY 1680
             T    SP  + S+SP  P YSPTSPSYSP SPS+ S  SP     SP G SP  TSP  
Sbjct: 1536 LTGYGQSPYGAGSFSPGRPGYSPTSPSYSPASPSFASAQSPFIGGASPFGASPYATSPFI 1595

Query: 1681 S-PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNY----------- 1727
               TSPTYSPTSP+ N  S    PS  YSP+SPR SP SP +SPTSP Y           
Sbjct: 1596 GGATSPTYSPTSPALNLTS----PS--YSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPSS 1649

Query: 1728 ---SPTSSSYSPTSPS----YSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPS 1779
               SPTS S+SP SP      SP+SP YSP+SP  A   +P YSP+SP YSP++  YSP+
Sbjct: 1650 PRYSPTSPSFSPASPRSPQMASPTSPKYSPTSPM-ASPASPRYSPTSPAYSPASPAYSPT 1708

Query: 1780 APGY 1783
            +P Y
Sbjct: 1709 SPAY 1712


>gi|154282795|ref|XP_001542193.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
            capsulatus NAm1]
 gi|150410373|gb|EDN05761.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
            capsulatus NAm1]
          Length = 1747

 Score = 1675 bits (4339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 904/1777 (50%), Positives = 1181/1777 (66%), Gaps = 154/1777 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            FPYS A++  ++ +QFG+LSP+EI++MSVV +E+ ET   +R +P+  GL+DPRLGTIDR
Sbjct: 6    FPYSKAQLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEQRQRPREKGLNDPRLGTIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
              +C TC   + +CPGHFGH+EL+ P+FHIGF+  +  ++ +VC NC KI A+  D K+ 
Sbjct: 66   NWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTTDQKYL 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK-------NKGGCGAQQ 175
            +AL+ R+PK R   I    K+   CE       P  D +EP  K       + GGCG  Q
Sbjct: 126  EALRFRDPKRRFDAIWRLSKDVLICEAD-----PSPDDDEPFAKEPSKPVRSHGGCGNIQ 180

Query: 176  PKLTIEGMKMIAEYKAQRKKN--DDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQLL 232
            P++  EG+ ++  +K  + ++  DD + Q PE    K+ +T +  L + K IS+ED +L+
Sbjct: 181  PQIRKEGISLVGTWKPSKNRDMMDDMDVQQPE----KRQITPQMALNIFKTISEEDVRLM 236

Query: 233  GLNPKYARPDWMIL-------------QVLPIPPPPVRPSDDLTHQLAMIIRHNENLRRQ 279
            GL+  YARP+WMI+              ++       R  DDLT++LA I+R N+N+ R 
Sbjct: 237  GLSNDYARPEWMIITVLPVPPPPVRPSVLIGGSGSGQRGEDDLTYKLAEIVRANQNVTRC 296

Query: 280  ERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGN 339
            E+ G+P H++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I  RLK KEGR+R N
Sbjct: 297  EQEGSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGRLRQN 356

Query: 340  LMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 399
            LMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPE VTP+NI +L ELV+ GP   
Sbjct: 357  LMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGELVDNGPDIH 416

Query: 400  PGKTGAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVERHLNDGDFVLFNRQPSLHKMSI 458
            PG   A+Y+IR  G+R+DLR+ K     + L+ G++VERH+ DGD +LFNRQPSLHK S+
Sbjct: 417  PG---ARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSLHKESM 473

Query: 459  MGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 518
            MGHRI++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L MVP  IVSPQ
Sbjct: 474  MGHRIRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVSPQ 533

Query: 519  SNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGK 578
             N P+MGIVQDTL G  KI +RD F+ K+  MNIL+W  D+DG +PQP ILKPRP WTGK
Sbjct: 534  RNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNILLWVPDWDGVIPQPAILKPRPRWTGK 593

Query: 579  QVFNLIIPKQINLFRTAAWHADNDKGILTA-----GDTLVRIEKGELLSGTLCKKTLGTS 633
            Q+ ++++P  +NL R      D DK  L+       D  + +  GEL+ G   KKT+G +
Sbjct: 594  QMISMVLPPGLNLLR-----VDRDKAPLSEKFSPLADGGLLVHGGELMYGMFSKKTVGAT 648

Query: 634  TGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISK 693
             G +IH I+ E GP+ A  F    Q +VNYWLL + FSIGIGDTI D  T+E I + +  
Sbjct: 649  GGGVIHTIFNEYGPETAMNFFNGAQTVVNYWLLHHGFSIGIGDTIPDLATIEKIEEAVRV 708

Query: 694  AKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKA 753
             K  V  +   A D +LEP PG  + E+FE+KV++ LN ARDEAG+  +KS  + NN   
Sbjct: 709  RKEEVDEITASATDNTLEPLPGMNVRETFESKVSRALNNARDEAGTETEKSFKDLNNAVQ 768

Query: 754  MVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYL 813
            M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYL
Sbjct: 769  MARSGSKGSIINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYL 828

Query: 814  RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQ 873
            RGLTP EFFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGDV+Q
Sbjct: 829  RGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVVQ 888

Query: 874  FLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQ--EYIDDLKT 929
            FLYGEDG+D   IE+Q +D +K     F   +R + MD +   +PN + Q  E   D+  
Sbjct: 889  FLYGEDGLDGAHIENQRVDIIKCSDERFRDRYRVDLMDPDRTLSPNVLEQATEIAGDI-- 946

Query: 930  IKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSD 989
              E++   D E ++L  DR  + + +A   +    LP+N++R++ +A+  F++     SD
Sbjct: 947  --EVQKYLDEEWEQLLKDRAFMRS-VAKEDEEMMQLPINVQRILESAKTIFRIREGAISD 1003

Query: 990  MHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTRE 1049
            +HP EV+  V  + ERL VV G+D +S EAQ++ATL F   LRS  A +R++ E+ L R 
Sbjct: 1004 LHPAEVIPQVRAMLERLVVVRGDDVISREAQESATLLFKAQLRSRLAFRRLVVEYSLNRL 1063

Query: 1050 AFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPR 1109
            AF+ V+G IESRF +++  PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPR
Sbjct: 1064 AFQHVLGAIESRFSKAMANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPR 1123

Query: 1110 LREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMG 1169
            L+EI+NVA  IKTPS++V+  P     KE  K ++  +E+T+LRSVTE TE++YDPD   
Sbjct: 1124 LKEILNVATNIKTPSMTVYQDPSRAMDKESVKQLRSVVEHTSLRSVTETTEIYYDPDIQS 1183

Query: 1170 TIIEEDVEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEF 1227
            T+IE D + V+SY+ +P ED+A +  + S WLLRI L+R  ++DK L++  VA KI   +
Sbjct: 1184 TVIEADRDMVESYFIIP-EDVADDSSRQSKWLLRIILSRPKLLDKSLTVQDVAMKIKDAY 1242

Query: 1228 DDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVN 1287
              D+  IF+D+NAD+ ++RIR + D   K + +D+  E DV LKK+ES++L  + LRGV 
Sbjct: 1243 PQDIAVIFSDNNADEQVIRIRQIQDS--KQDDDDDDTEYDVTLKKLESHLLDTLTLRGVA 1300

Query: 1288 LLAV------------------------MCHE-----------------DVDARRTTSNH 1306
             +                          +C E                  VD  RT SN 
Sbjct: 1301 GIERAFINEKSRVRVLEDGSLHQSADDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQ 1360

Query: 1307 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1366
             IEI+EV GIEA R ALL EL  V++FDGSYVN+RHLA+L D MT RG LMA+TRHGINR
Sbjct: 1361 FIEILEVFGIEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINR 1420

Query: 1367 NDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLK 1426
             DTG +MRCSFEETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+  +YL+ +ML 
Sbjct: 1421 ADTGALMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQDMLM 1480

Query: 1427 NAIELQLPSYMEGLEFGMTP--ARSPV-SGTPYHDGMMSPGYLFS--PNLRLSPVTDAQF 1481
              +       M     G+    A +P  S +P  D M    Y+ +  P+   SP+  A  
Sbjct: 1481 GVVSSN-AGLMAADGKGLLSDGAATPYDSSSPLQDNM----YIGTPDPDSNFSPIRQAGS 1535

Query: 1482 SPYVGGMAFSPTS-SPGYSPSSP-----GYSPSSP-GYSPTSPGYSPTSPGYSPTSPGYS 1534
                G   + P+  S G+SP        GYSPSSP   SPTSP YSP+S GYSPTSPG S
Sbjct: 1536 ETPAGFTEYQPSGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSS-GYSPTSPGMS 1594

Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY--SPTSPSYSPTSPSY---------- 1582
             TSP +  SSPG+SP SPA++PTSP+YSPTSPSY  SPTSPSYSPTSP +          
Sbjct: 1595 ITSPRFM-SSPGFSPASPAFAPTSPAYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSYSPT 1653

Query: 1583 -----------SPTSPSYSPTSPSYS-PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP- 1629
                       SPTSPSYSPTSP+    T    SPT    SPTSP Y+PTSP +SPTSP 
Sbjct: 1654 SPSFSPASPAFSPTSPSYSPTSPALGVSTGRHLSPT----SPTSPKYTPTSPGWSPTSPE 1709

Query: 1630 SYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSP 1664
            +YSPTSP++  SPTSP   PTSP YSPTSP+++P SP
Sbjct: 1710 TYSPTSPNFSGSPTSPG-GPTSPGYSPTSPTFNPISP 1745



 Score =  144 bits (364), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 103/234 (44%), Positives = 135/234 (57%), Gaps = 45/234 (19%)

Query: 1567 SYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPS--YSPTSP-AYSPTSPAYSPTSP 1622
            ++SP   + S T   ++   PS +S     +   SP   YSP+SP   SPTSP YSP+S 
Sbjct: 1526 NFSPIRQAGSETPAGFTEYQPSGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSS- 1584

Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY--SPTSPGYSPTSPSY 1680
             YSPTSP  S TSP +  +SP +SP SP+++PTSP+YSPTSP+Y  SPTSP YSPTSP +
Sbjct: 1585 GYSPTSPGMSITSPRFM-SSPGFSPASPAFAPTSPAYSPTSPSYQQSPTSPSYSPTSPGF 1643

Query: 1681 SP---------------------TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
            SP                     TSP+YSPTSP+    + ++                SP
Sbjct: 1644 SPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGVSTGRH---------------LSP 1688

Query: 1720 YSPTSPNYSPTSSSYSPTSP-SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
             SPTSP Y+PTS  +SPTSP +YSP+SP +S S     G  +P YSP+SP ++P
Sbjct: 1689 TSPTSPKYTPTSPGWSPTSPETYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFNP 1742



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 109/230 (47%), Positives = 141/230 (61%), Gaps = 34/230 (14%)

Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP-AYSPTSPSYS 1632
            ++SP   + S T   ++   PS    S  +SP   A SP    YSP+SP   SPTSP YS
Sbjct: 1526 NFSPIRQAGSETPAGFTEYQPS--GFSGGFSPHG-ARSPGG-GYSPSSPFNTSPTSPRYS 1581

Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY--SPTSPTYSPT 1690
            P+S  YSPTSP  S TSP +  +SP +SP SPA++PTSP YSPTSPSY  SPTSP+YSPT
Sbjct: 1582 PSS-GYSPTSPGMSITSPRFM-SSPGFSPASPAFAPTSPAYSPTSPSYQQSPTSPSYSPT 1639

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS-----------SSYSPTSP 1739
            SP ++P S  YSP+      +     +  +SPTSP+YSPTS           S  SPTSP
Sbjct: 1640 SPGFSPTSPSYSPTSPSFSPA-----SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSP 1694

Query: 1740 SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY--SPSAGYSPSAPGYSPSS 1787
             Y+P+SP +SP+SP         YSP+SP +  SP++   P++PGYSP+S
Sbjct: 1695 KYTPTSPGWSPTSPET-------YSPTSPNFSGSPTSPGGPTSPGYSPTS 1737



 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/216 (41%), Positives = 121/216 (56%), Gaps = 45/216 (20%)

Query: 1602 SYSPTSPAYSPTSPAYSPTSPA-YSPTSPSYSPTSPS--YSPTSP-SYSPTSPSYSPTSP 1657
            ++SP   A S T   ++   P+ +S     +   SP   YSP+SP + SPTSP YSP+S 
Sbjct: 1526 NFSPIRQAGSETPAGFTEYQPSGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSS- 1584

Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
             YSPTSP  S TSP +  +SP +SP SP ++PTSP+Y+P S    PS   SP+SP     
Sbjct: 1585 GYSPTSPGMSITSPRFM-SSPGFSPASPAFAPTSPAYSPTS----PSYQQSPTSP----- 1634

Query: 1718 SPYSPTSPNYSP---------------------TSSSYSPTSPSYSPSSPTY-SPSSPYN 1755
              YSPTSP +SP                     TS SYSPTSP+   S+  + SP+SP  
Sbjct: 1635 -SYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGVSTGRHLSPTSPT- 1692

Query: 1756 AGGGNPDYSPSSPQYSPSA--GYSPSAPGYSPSSTS 1789
                +P Y+P+SP +SP++   YSP++P +S S TS
Sbjct: 1693 ----SPKYTPTSPGWSPTSPETYSPTSPNFSGSPTS 1724



 Score = 68.2 bits (165), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 74/138 (53%), Gaps = 27/138 (19%)

Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
            ++SP   A S T  G++   PS           S  ++P  A+ SP   YSPSSP  +  
Sbjct: 1526 NFSPIRQAGSETPAGFTEYQPS---------GFSGGFSPHGAR-SPGGGYSPSSPFNT-- 1573

Query: 1718 SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GY 1776
               SPTSP YSP SS YSPTSP  S +SP +  S         P +SP+SP ++P++  Y
Sbjct: 1574 ---SPTSPRYSP-SSGYSPTSPGMSITSPRFMSS---------PGFSPASPAFAPTSPAY 1620

Query: 1777 SPSAPGYSPSSTS-QYTP 1793
            SP++P Y  S TS  Y+P
Sbjct: 1621 SPTSPSYQQSPTSPSYSP 1638


>gi|425770649|gb|EKV09117.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
 gi|425771955|gb|EKV10383.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
          Length = 1733

 Score = 1674 bits (4336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 881/1748 (50%), Positives = 1162/1748 (66%), Gaps = 145/1748 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            FPYS A +  ++ +QFG+ +P+EI++MSVV IE+ ET   +R +P+  G++DPRLGTIDR
Sbjct: 6    FPYSKAPLRTIKEIQFGLFAPEEIKRMSVVHIEYPETLDDQRQRPRTKGINDPRLGTIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            +  CETC     ECPGHFGH+ELA P+FHIGF+  +  ++ +VC NC KI A+  D KF 
Sbjct: 66   QYNCETCEEGPKECPGHFGHIELASPVFHIGFLTKIKKLLETVCHNCGKIKANTADSKFT 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEG 182
            +AL+ R+PK R   I    K+   CE    +D      +    ++ GGCG  QP +  EG
Sbjct: 126  EALRFRDPKRRFDSIWRLSKDVLICEADAPVDDEEFSKDSQKGRSHGGCGNAQPTVRKEG 185

Query: 183  MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
            + ++  +K  +   +D+   PE    K+ +T    L + + IS ED +++GL+  YARP+
Sbjct: 186  ICLVGTWKPSKAMMEDEMAQPE----KKVITPTMALNIFRNISVEDVRIMGLSNDYARPE 241

Query: 243  WMILQVLPIPPPPVRPS------------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            WMIL VLP+PPP VRPS            DDLT++LA I+R N+N++R E+ GAP H+I 
Sbjct: 242  WMILTVLPVPPPTVRPSVVMGATSGARGEDDLTYKLAEIVRANQNVQRCEQEGAPEHVIR 301

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            EF  LLQ+HIATY DN++ GQP A Q+  RP+K++ SRLK KEGR+R NLMGKRVDFSAR
Sbjct: 302  EFESLLQYHIATYMDNDIAGQPTAMQKGNRPVKALRSRLKGKEGRLRQNLMGKRVDFSAR 361

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVIT DP + +D++GVP+S A  LTYPE VTP+NIE+L++L+  GP+  PG   A+YI+R
Sbjct: 362  TVITGDPNLRLDEVGVPYSTARILTYPEVVTPWNIEKLQKLIANGPNIHPG---ARYIVR 418

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            D+G+R+DLR+ K++    L  G+KVERHL++GD++LFNRQPSLHK S+MGHR+++MP+ST
Sbjct: 419  DNGERIDLRHAKRAGAQQLLYGWKVERHLDNGDYILFNRQPSLHKESMMGHRVRVMPFST 478

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FR+NLSVTSPYNADFDGDEMN+HVPQ  E RAE+ EL +VPK IVSPQ N P+MGIVQDT
Sbjct: 479  FRMNLSVTSPYNADFDGDEMNLHVPQGEEARAELAELTLVPKNIVSPQRNGPLMGIVQDT 538

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L G  KI +RDTF+ KD  MN+++W  D+DG +P P ILKPRP WTGKQ+ ++  P  +N
Sbjct: 539  LCGIYKICRRDTFLTKDQVMNLMLWVPDWDGAIPPPAILKPRPRWTGKQMISMAFPSGLN 598

Query: 591  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
            L R     +   +      D  + I  G+L+ G L KKT+G S G +IH I+ E GPD  
Sbjct: 599  LLRVDKDGSPLAEKFSPLSDGGLLIHGGQLMYGMLSKKTVGASGGGVIHTIFNEYGPDTC 658

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
             KF    Q +V YWLL N FSIGIGDTI D  T+  I + +   K  V+ +   A + +L
Sbjct: 659  VKFFSGAQTIVGYWLLHNGFSIGIGDTIPDQHTINKIEEAVRNRKQEVEEITASATENTL 718

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            E  PG  + E+FE+KV++ LN ARDEAG + +KSL + NN   M  +GSKGS INISQMT
Sbjct: 719  EALPGMNVRETFESKVSRALNNARDEAGDATEKSLKDLNNAIQMARSGSKGSAINISQMT 778

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GRE
Sbjct: 779  ALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGRE 838

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD+IQF+YGEDG+D   IE+Q 
Sbjct: 839  GLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAHIENQR 898

Query: 891  LDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
            +D +K   ++  + FR + MD E    P  +  E  +++    E++  FD E + +  DR
Sbjct: 899  VDHIKCSDAKLMERFRVDVMDPERTLGPEIL--EQANEIAGDIEVQRYFDEEWEAILKDR 956

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
              L T +    +    LP+N++R++  A+ TF++     SD+HP EV+  V +L +RL +
Sbjct: 957  EFLRT-VVKEDEEMMQLPINVQRILEMARTTFRIREGTISDLHPAEVIPQVQQLLDRLVI 1015

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            V G DP+S EAQ NATL F   LRS  A +R++ ++ L + AF+ V+G IESRF ++   
Sbjct: 1016 VRGNDPISQEAQVNATLLFKAQLRSRLAFRRLVTDYSLNKLAFQHVLGAIESRFARAAAN 1075

Query: 1069 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1128
            PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA  IKTPS++V+
Sbjct: 1076 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIKTPSMTVY 1135

Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD- 1187
             +  +   KE AK ++  +E+T+LRSVTE+TE++YDPD   T+IE D + V+SY+ +P+ 
Sbjct: 1136 QEGMMTHDKEGAKLLRSLVEHTSLRSVTESTEIYYDPDIQSTVIENDRDMVESYFIIPED 1195

Query: 1188 --EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
              +D++ +  S WLLRI L+R  ++DK L++  VA +I Q +  D+  IF+D+NAD+ ++
Sbjct: 1196 NADDVSQQ--SKWLLRIVLSRRSLLDKGLTVQDVATRIKQAYPRDIAVIFSDNNADEQVI 1253

Query: 1246 RIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------------------- 1286
            RIR + D     + + E       LKK+E ++L  + LRGV                   
Sbjct: 1254 RIRQVQDYKDDDDEDVEYDVT---LKKLEQHLLDTLTLRGVPGVDRAFINEKSKVRVIED 1310

Query: 1287 ----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                                  +L AV+    VDA RT SN  IEI EV GIEA R A+L
Sbjct: 1311 GTLHTSKSDPLCKEWVLETSGSSLAAVLTIPGVDASRTYSNQFIEIFEVFGIEAARTAVL 1370

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
             EL +V++FDGSYVN+RHLA+L D MT RG+L  +TRHGINR D G +MRCSFEETV+IL
Sbjct: 1371 RELTLVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRCSFEETVEIL 1430

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGM 1444
            L+AA F E D  RGV+EN++LGQ+AP GTG+  +YL D+ L N +     SY  GL  G+
Sbjct: 1431 LEAAAFGELDDCRGVSENLILGQMAPAGTGEFDVYL-DQNLLNTVVSSNASY--GL-MGV 1486

Query: 1445 TPAR---------------SPVSGTP--------------YHDGMMSPGYL--FSPNLR- 1472
              A+               SP++ +P              YH G  S G L  +   +  
Sbjct: 1487 VGAKDAIISDGAATQYDTGSPMASSPCMTSGDLPAPFSPMYHTGQESAGGLTEYQSTVTY 1546

Query: 1473 ---LSPVTDAQFSPY---------------------VGGMAFSPTSSPGYSPSSPGYSPS 1508
               LSP+     SP+                     +G  +    +SPG+SPSSP +  +
Sbjct: 1547 CDGLSPLDYPPISPFNTSPTSPVFSPSSSYSPTSPVIGMTSPRMMTSPGFSPSSPTFQST 1606

Query: 1509 SPGYSPTSPGY---SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 1565
            SP YSPTSP Y   SPTSP YSPTSPG+SPTSP YSP+SP +SP SPA+SPTSPSYSPTS
Sbjct: 1607 SPVYSPTSPAYGRASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPASPAFSPTSPSYSPTS 1666

Query: 1566 PSYSPT---SPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
            P+ S     SP+ SPTSP Y+PTSP +SPTSP SYSPTSP++S  SP  SPTSPAYSPTS
Sbjct: 1667 PAISGARHLSPT-SPTSPKYTPTSPGWSPTSPQSYSPTSPNFS-GSPT-SPTSPAYSPTS 1723

Query: 1622 PAYSPTSP 1629
            PAYSPTSP
Sbjct: 1724 PAYSPTSP 1731



 Score =  157 bits (398), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/157 (59%), Positives = 112/157 (71%), Gaps = 27/157 (17%)

Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSY---SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            TSP +SP+SP++  TSP YSPTSP+Y   SPTSPSYSPTSP +SPTSP YSPTSPS+SP 
Sbjct: 1592 TSPGFSPSSPTFQSTSPVYSPTSPAYGRASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPA 1651

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA---SPYSPTSPNYSPTSSSYSPTSP- 1739
            SP +SPTSPS             YSP+SP +S A   SP SPTSP Y+PTS  +SPTSP 
Sbjct: 1652 SPAFSPTSPS-------------YSPTSPAISGARHLSPTSPTSPKYTPTSPGWSPTSPQ 1698

Query: 1740 SYSPSSPTY--SPSSPYNAGGGNPDYSPSSPQYSPSA 1774
            SYSP+SP +  SP+SP      +P YSP+SP YSP++
Sbjct: 1699 SYSPTSPNFSGSPTSPT-----SPAYSPTSPAYSPTS 1730



 Score =  147 bits (372), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/158 (57%), Positives = 111/158 (70%), Gaps = 24/158 (15%)

Query: 1641 TSPSYSPTSPSYSPTSPSYSPTSPAY---SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
            TSP +SP+SP++  TSP YSPTSPAY   SPTSP YSPTSP +SPTSP YSPTSPS++P 
Sbjct: 1592 TSPGFSPSSPTFQSTSPVYSPTSPAYGRASPTSPSYSPTSPGFSPTSPNYSPTSPSFSPA 1651

Query: 1698 SAKYSP-SLAYSPSSPRLSPA---SPYSPTSPNYSPTSSSYSPTSP-SYSPSSPTYSPSS 1752
            S  +SP S +YSP+SP +S A   SP SPTSP Y+PTS  +SPTSP SYSP+SP +S   
Sbjct: 1652 SPAFSPTSPSYSPTSPAISGARHLSPTSPTSPKYTPTSPGWSPTSPQSYSPTSPNFS--- 1708

Query: 1753 PYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
                  G+P  SP+SP       YSP++P YSP+S  Q
Sbjct: 1709 ------GSPT-SPTSP------AYSPTSPAYSPTSPRQ 1733



 Score =  119 bits (297), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 68/136 (50%), Positives = 92/136 (67%), Gaps = 21/136 (15%)

Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNY 1727
            TSPG+SP+SP++  TSP YSPTSP+Y             SP+SP  SP SP +SPTSPNY
Sbjct: 1592 TSPGFSPSSPTFQSTSPVYSPTSPAYG----------RASPTSPSYSPTSPGFSPTSPNY 1641

Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGN--------PDYSPSSPQYSPSA--GYS 1777
            SPTS S+SP SP++SP+SP+YSP+SP  +G  +        P Y+P+SP +SP++   YS
Sbjct: 1642 SPTSPSFSPASPAFSPTSPSYSPTSPAISGARHLSPTSPTSPKYTPTSPGWSPTSPQSYS 1701

Query: 1778 PSAPGYSPSSTSQYTP 1793
            P++P +S S TS  +P
Sbjct: 1702 PTSPNFSGSPTSPTSP 1717


>gi|115492277|ref|XP_001210766.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
            NIH2624]
 gi|114197626|gb|EAU39326.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
            NIH2624]
          Length = 1742

 Score = 1674 bits (4336), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 896/1756 (51%), Positives = 1178/1756 (67%), Gaps = 138/1756 (7%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            FPYS A +  ++ +QFG+ SP+EI++MSVV +E+ ET   +R +P+  GL+DPRLGTIDR
Sbjct: 6    FPYSKAPLRTIKEIQFGLFSPEEIKRMSVVHVEYPETMDEQRQRPRTKGLNDPRLGTIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILAD--EDDHK 120
            +  CETC     ECPGHFGH+ELA P+FHIGF+  +  ++ +VC NC KI AD  + D K
Sbjct: 66   QWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKLLETVCHNCGKIKADSIQSDPK 125

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK--KNKGGCGAQQPKL 178
            F +AL++R+PK R   I    K+   C+     D      +E  K  ++ GGCG  QP +
Sbjct: 126  FLEALRMRDPKRRFDHIWRISKDILICQADPPPDDDDPFSKESSKPVRHHGGCGNSQPTI 185

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              EG+ ++  +K  +  ++D  Q PE    K+T+T +  L V + IS ED +++GL+  Y
Sbjct: 186  RKEGITLVGTWKPNKMLDEDDMQQPE----KKTITPQMALNVFRNISHEDVRIMGLSNDY 241

Query: 239  ARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+WM++ VLP+PPPPV             R  DDLT++LA I+R N+N++R E+ GAP
Sbjct: 242  ARPEWMVITVLPVPPPPVRPSVLVGGSTSGQRGEDDLTYKLAEIVRANQNVQRCEQEGAP 301

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             H++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I SRLK KEGR+R NLMGKRV
Sbjct: 302  EHVVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRV 361

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT DP +++D++GVP SIA  LTYPE VTPYNIE+L++LV  GP+  PG   A
Sbjct: 362  DFSARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNGPNEHPG---A 418

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            +YI+RD+G+R+DLR+ K++    L  G+KVERH+ DGD +LFNRQPSLHK S+MGHR+++
Sbjct: 419  RYIVRDNGERIDLRHAKRAGGQQLLYGWKVERHIMDGDVILFNRQPSLHKESMMGHRVRV 478

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E+RAE+ +L +VP  IVSPQ N P+MG
Sbjct: 479  MPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELSQLALVPMNIVSPQRNGPLMG 538

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDTL G  KI +RD F+ KD  MN++MW  D+DG +P P ILKPRP WTGKQ+ ++ +
Sbjct: 539  IVQDTLCGIYKICRRDIFLTKDQVMNMMMWVPDWDGVIPPPAILKPRPRWTGKQMISMAL 598

Query: 586  PKQINLFRTAAWHADNDKGILTA-----GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHV 640
            P  +NL R      D D   L+       D  + I  G+L+ G   KKT+G S G +IH 
Sbjct: 599  PSGLNLLR-----VDKDNSALSEKFSPLNDGGLLIHGGQLMYGMFSKKTVGASGGGVIHT 653

Query: 641  IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKN 700
            I+ E GP  A  F    Q +VNYWLL N FSIGIGDTI DA T++ I + +   K  V+ 
Sbjct: 654  IFNEYGPGTAVAFFNGAQSIVNYWLLHNGFSIGIGDTIPDALTIQRIENCVRVRKKEVEA 713

Query: 701  LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760
            +   A + +LEP PG  + E+FE+KV++ LN ARDEAGS  +KSL + NN   M  +GSK
Sbjct: 714  ITASATENTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMARSGSK 773

Query: 761  GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 820
            GS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP E
Sbjct: 774  GSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTE 833

Query: 821  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 880
            FFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGDVIQF+YGEDG
Sbjct: 834  FFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQFVYGEDG 893

Query: 881  MDSVWIESQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRDVFD 938
            +D   IE+Q +D +K    +F   FR + MD E +  P  +  E  +++    E++   D
Sbjct: 894  LDGAHIENQRVDIIKCSDDKFRDRFRVDLMDPERSLGPEIL--EQANEIAGDVEVQRYLD 951

Query: 939  AEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
             E ++L  DR  L T +A   +    LP+N++R++  A+ TF++     SD+HP EV+  
Sbjct: 952  EEWEQLLKDRAFLRT-VAKEDEEMMQLPINVQRILETARSTFRIREGTISDLHPAEVIPQ 1010

Query: 999  VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            V  L +RLK+V G+D +SVEAQ+NATL F   LRS  A +R++ E+ + + AF+ V+G I
Sbjct: 1011 VQSLLDRLKIVRGDDIISVEAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGAI 1070

Query: 1059 ESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK 1118
            E+RF ++  +PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA 
Sbjct: 1071 ETRFAKAAASPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAT 1130

Query: 1119 KIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEF 1178
             IKTPS++V+ +P     KE AK ++ A+E+T+LRSVTEATE++YDPD   T+IE D + 
Sbjct: 1131 NIKTPSMTVYQEPYTCHDKESAKQLRSAVEHTSLRSVTEATEIYYDPDIQTTVIENDRDM 1190

Query: 1179 VKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
            V+SY+ +P ED+  +  + S WLLRI L+R  ++DK L++  VA +I Q +  D+  IF+
Sbjct: 1191 VESYFIIP-EDVTDDSTRQSKWLLRIILSRPKLLDKGLTVQDVATRIKQAYPKDIAVIFS 1249

Query: 1237 DDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---------- 1286
            D+NAD+ ++RIR +  +  K + +D+  E DV LKK+E ++L  + LRGV          
Sbjct: 1250 DNNADEQVIRIRQI--QDYKDDEDDDDIEYDVTLKKLEQHLLDTLTLRGVPGVERAFINE 1307

Query: 1287 -------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLG 1315
                                           +L  V+    VDA RT SN  IE+ EV G
Sbjct: 1308 KSKVRVLEDGSLFVSKTDPLCKEWVLETSGSSLGEVLAIPGVDATRTYSNQFIEVFEVFG 1367

Query: 1316 IEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRC 1375
            IEA R A+L EL  V++FDGSYVN+RHLA+L D MT RG+L  +TRHGINR D G +MRC
Sbjct: 1368 IEAARTAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGALMRC 1427

Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS 1435
            SFEETV+ILL+AA F E D  RGV+EN++LGQ+AP GTG+  +YL+  +L   +      
Sbjct: 1428 SFEETVEILLEAAAFGELDDCRGVSENLILGQMAPAGTGEFDIYLDQNLLNTVVSNNARY 1487

Query: 1436 YMEGLEFGMTPARSPVSGTPYHDG--MMSPGYLFS--PNLRLSPVTDA---------QFS 1482
             + G         S  + T Y  G  M    Y+ +  P+   SP+  A         ++ 
Sbjct: 1488 GVMGAIGAKDAIISDGAATQYDTGSPMQESAYIGTPDPDSNFSPIRQAGAESPGGFTEYQ 1547

Query: 1483 P---YVGGMAFSPTSSPGYSPSSP---------------------GYSPSSPGYSPTSPG 1518
            P   + GG + +PTS  GYSP SP                     G   +SP    TSPG
Sbjct: 1548 PTAGFGGGFSPAPTSPLGYSPGSPFSGGATSPSYSPSSSYSPTSPGMGITSPRM--TSPG 1605

Query: 1519 YSPTSPGYSPTSPGYSPTSPTY---SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1575
            +SP SP + PTSP YSPTSP Y   SP+SP YSPTSP +SPTSP+YSPTSP+ SP SP +
Sbjct: 1606 FSPASPAFGPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPNLSPASPVF 1665

Query: 1576 SPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPAYSPTSP-AYSPTSP--AYSPTSP 1629
            SPTSPSYSPTSP+       SP+ SPTSP Y+PTSP +SPTSP +YSPTSP    SPTSP
Sbjct: 1666 SPTSPSYSPTSPALGAGRNMSPT-SPTSPKYTPTSPGWSPTSPQSYSPTSPNIGGSPTSP 1724

Query: 1630 --SYSPTSPSYSPTSP 1643
              +YSPTSP+YSPTSP
Sbjct: 1725 GGAYSPTSPTYSPTSP 1740



 Score =  156 bits (395), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 111/207 (53%), Positives = 134/207 (64%), Gaps = 20/207 (9%)

Query: 1575 YSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP 1633
            Y PT+      SP+  PTSP  YSP SP     +      S +YSPTSP    TSP    
Sbjct: 1546 YQPTAGFGGGFSPA--PTSPLGYSPGSPFSGGATSPSYSPSSSYSPTSPGMGITSPRM-- 1601

Query: 1634 TSPSYSPTSPSYSPTSPSYSPTSPSY---SPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
            TSP +SP SP++ PTSP+YSPTSP+Y   SPTSP+YSPTSPG+SPTSP+YSPTSP  SP 
Sbjct: 1602 TSPGFSPASPAFGPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPNLSPA 1661

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP-SYSPSSPTY- 1748
            SP ++P S  YSP+   SP+       SP SPTSP Y+PTS  +SPTSP SYSP+SP   
Sbjct: 1662 SPVFSPTSPSYSPT---SPALGAGRNMSPTSPTSPKYTPTSPGWSPTSPQSYSPTSPNIG 1718

Query: 1749 -SPSSPYNAGGGNPDYSPSSPQYSPSA 1774
             SP+SP  A      YSP+SP YSP++
Sbjct: 1719 GSPTSPGGA------YSPTSPTYSPTS 1739



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/215 (52%), Positives = 136/215 (63%), Gaps = 24/215 (11%)

Query: 1582 YSPTSPSYSPTSPSYSPTSP-SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            Y PT+      SP+  PTSP  YSP SP     +      S +YSPTSP    TSP    
Sbjct: 1546 YQPTAGFGGGFSPA--PTSPLGYSPGSPFSGGATSPSYSPSSSYSPTSPGMGITSPRM-- 1601

Query: 1641 TSPSYSPTSPSYSPTSPSYSPTSPAY---SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
            TSP +SP SP++ PTSP+YSPTSPAY   SPTSP YSPTSP +SPTSP YSPTSP+ +P 
Sbjct: 1602 TSPGFSPASPAFGPTSPAYSPTSPAYGQASPTSPSYSPTSPGFSPTSPNYSPTSPNLSPA 1661

Query: 1698 SAKYSP-SLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP-TYSPSSPYN 1755
            S  +SP S +YSP+SP L      SPTSP    TS  Y+PTSP +SP+SP +YSP+SP N
Sbjct: 1662 SPVFSPTSPSYSPTSPALGAGRNMSPTSP----TSPKYTPTSPGWSPTSPQSYSPTSP-N 1716

Query: 1756 AGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
             GG     SP+SP       YSP++P YSP+S  Q
Sbjct: 1717 IGG-----SPTSP----GGAYSPTSPTYSPTSPRQ 1742



 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/186 (50%), Positives = 114/186 (61%), Gaps = 21/186 (11%)

Query: 1610 YSPTSPAYSPTSPAYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
            Y PT+      SPA  PTSP  YSP SP     +      S SYSPTSP    TSP    
Sbjct: 1546 YQPTAGFGGGFSPA--PTSPLGYSPGSPFSGGATSPSYSPSSSYSPTSPGMGITSPRM-- 1601

Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNY 1727
            TSPG+SP SP++ PTSP YSPTSP+Y             SP+SP  SP SP +SPTSPNY
Sbjct: 1602 TSPGFSPASPAFGPTSPAYSPTSPAYG----------QASPTSPSYSPTSPGFSPTSPNY 1651

Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
            SPTS + SP SP +SP+SP+YSP+SP  A G   + SP+SP    S  Y+P++PG+SP+S
Sbjct: 1652 SPTSPNLSPASPVFSPTSPSYSPTSP--ALGAGRNMSPTSPT---SPKYTPTSPGWSPTS 1706

Query: 1788 TSQYTP 1793
               Y+P
Sbjct: 1707 PQSYSP 1712


>gi|226295248|gb|EEH50668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
            brasiliensis Pb18]
          Length = 1746

 Score = 1674 bits (4334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 905/1770 (51%), Positives = 1187/1770 (67%), Gaps = 136/1770 (7%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTI 60
             +FPYS A++  ++ +QFG+LSP+EI++MSVV +E+ ET   +R +P+  GL+DPRLGTI
Sbjct: 4    VKFPYSKAQLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEQRQRPREKGLNDPRLGTI 63

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DR  +C TC   + +CPGHFGH+EL+ P+FHIGF+  +  ++ +VC NC KI A+ +D K
Sbjct: 64   DRNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTNDQK 123

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK--KNKGGCGAQQPKL 178
            + +AL+ R+PK R   I    K+   CE     D      +E  K  ++ GGCG  QP++
Sbjct: 124  YLEALRFRDPKRRFDAIWRLSKDVLICEADPTPDDDDPFSKEASKPVRSHGGCGNMQPQI 183

Query: 179  TIEGMKMIAEYKAQRKKN--DDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
              EG+ ++  +K  + ++  DD + Q PE    K+ +T +  L + + IS+ED +L+GL+
Sbjct: 184  RKEGISLVGTWKPNKNRDMMDDMDIQQPE----KRQITPQMALNIFRNISEEDVRLMGLS 239

Query: 236  PKYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WMI+ VLP+PPPPV             R  DDLT++LA I+R N+N+ R E+ 
Sbjct: 240  NDYARPEWMIITVLPVPPPPVRPSVLVGGSGSGQRGEDDLTYKLAEIVRANQNVTRCEQE 299

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P H++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I  RLK KEGR+R NLMG
Sbjct: 300  GSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMG 359

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT DP +++D++GVP SIA  LTYPE VTP+NI +L ELV+ GP   PG 
Sbjct: 360  KRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGELVDNGPDIHPG- 418

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
              A+Y+IR  G+R+DLR+ K     + L+ G++VERH+ DGD +LFNRQPSLHK S+M H
Sbjct: 419  --ARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSLHKESMMAH 476

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
            R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L MVP  IVSPQ N 
Sbjct: 477  RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVSPQRNG 536

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
            P+MGIVQDTL G  KI +RD F+ K+  MNIL+W  D+DG +PQP ILKPRP WTGKQ+ 
Sbjct: 537  PLMGIVQDTLCGIYKICRRDVFLSKEQVMNILLWVPDWDGVIPQPAILKPRPRWTGKQLI 596

Query: 582  NLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            ++++P  +NL R     A   +      D  V +  GEL+ G   KKT+G + G +IH I
Sbjct: 597  SMVLPPGLNLLRVDRDRAPRSEKFSPPADGGVLVHGGELMYGMFSKKTVGATGGGIIHTI 656

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E GP+ A  F    Q +VNYWLL + FSIGIGDTI D  T++ I + +   K  V ++
Sbjct: 657  FNEYGPETAMNFFNGAQTVVNYWLLHHGFSIGIGDTIPDLPTIQKIENAVRVRKEEVDDI 716

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
               A D +LEP PG  + E+FE+KV++ LN ARDEAG+  +KS  + NN   M  +GSKG
Sbjct: 717  TASATDNTLEPLPGMNVRETFESKVSRALNNARDEAGTETEKSFKDLNNAVQMARSGSKG 776

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EF
Sbjct: 777  SIINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEF 836

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGDV+QFLYGEDG+
Sbjct: 837  FFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVVQFLYGEDGL 896

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQ--EYIDDLKTIKELRDVF 937
            D   IE+Q +D +K    +F + FR + MD E   +PN + Q  E   D+    E++   
Sbjct: 897  DGAHIENQRVDIIKCSDEKFRERFRVDLMDPERTLSPNVLEQATEIAGDI----EVQTYL 952

Query: 938  DAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVE 997
            D E ++L  DR  + T  A   D    LP+N++R++ +A+  F++     SD+HP EV+ 
Sbjct: 953  DEEWEQLLKDRAFMRTA-AKEDDEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVIP 1011

Query: 998  AVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGE 1057
             V  L +RL VV G+D +S EAQ++ATL F   LRS  A +R++ E+ L + AF+ V+G 
Sbjct: 1012 QVRALLDRLVVVRGDDVISREAQESATLLFKAQLRSRLAFRRLVTEYSLNKLAFQHVLGA 1071

Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
            IE+RF +++  PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA
Sbjct: 1072 IENRFSRAMANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVA 1131

Query: 1118 KKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVE 1177
              IKTPS++V+        KE AK ++  +E+T+LRSVTEATE++YDPD   T+IE D +
Sbjct: 1132 THIKTPSMTVYQDSSRAMDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVIEADRD 1191

Query: 1178 FVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIF 1235
             V+SY+ +P ED+A +  + S WLLRI L+R  ++DK L++  VA +I   +  D+  IF
Sbjct: 1192 MVESYFIIP-EDVADDSSRQSKWLLRIILSRPKLLDKNLTVQDVAMRIKDAYPQDIAVIF 1250

Query: 1236 NDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAV---- 1291
            +D+NAD+ ++RIR + D   K + +D+  E DV LKK+E ++L  + LRGV  +      
Sbjct: 1251 SDNNADEQVIRIRQIQDT--KQDDDDDDTEYDVTLKKLEGHLLDTLTLRGVAGIERAFIN 1308

Query: 1292 --------------------MCHE-----------------DVDARRTTSNHLIEIIEVL 1314
                                +C E                  VD  RT SN  +EI+EV 
Sbjct: 1309 EKSRVRVLEDGSLHQSSEDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQFVEILEVF 1368

Query: 1315 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
            GIEA R ALL EL  V++FDGSYVN+RHLA+L D MT RG LMA+TRHGINR DTG +MR
Sbjct: 1369 GIEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMR 1428

Query: 1375 CSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQ-- 1432
            CSFEETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+  +YL+  ML   +     
Sbjct: 1429 CSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQNMLMGVVSSNAG 1488

Query: 1433 -LPSYMEGLEFGMTPARSPVSGTPYHDGMM----SPGYLFSPNLRLSPVTDAQFSPYVGG 1487
             + +  +GL  G   A    S +P  D M      P   FSP  +    T A F+ Y   
Sbjct: 1489 LMTADGKGL-LGDGAATPYDSNSPLQDNMYIGTPDPDSAFSPIRQAGSETPAGFTEYQ-- 1545

Query: 1488 MAFSPTSSPGYSPSSP-----GYSPSSP-GYSPTSPGYSPTSPGYSPTSPGYSPTSPTYS 1541
               +P  S G+SP        GYSPSSP   SPTSP YSP+S GYSPTSPG S TSP + 
Sbjct: 1546 ---APGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSS-GYSPTSPGMSITSPRFM 1601

Query: 1542 PSSPGYSPTSPAYSPTSPSYSPTSPSY--SPTSPSYSPTSPSY----------------- 1582
             SSPG+SP SP ++PTSP+YSPTSP Y  SPTSPSYSPTSP +                 
Sbjct: 1602 -SSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPA 1660

Query: 1583 ----SPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTSPAYSPTSPAYSPTSP-SYSPTSP 1636
                SPTSPSYSPTSP+   ++  + SPTS    PTSP Y+PTSP +SPTSP +YSPTSP
Sbjct: 1661 SPAFSPTSPSYSPTSPALGGSTGRHLSPTS----PTSPKYTPTSPGWSPTSPETYSPTSP 1716

Query: 1637 SY--SPTSPSYSPTSPSYSPTSPSYSPTSP 1664
            ++  SPTSP   PTSP YSPTSP++SPTSP
Sbjct: 1717 NFSGSPTSPG-GPTSPGYSPTSPTFSPTSP 1745



 Score =  152 bits (384), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 139/226 (61%), Gaps = 36/226 (15%)

Query: 1560 SYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPS--YSPTSP-SYSPTSPAYSPTSP 1615
            ++SP   + S T   ++   +P +S     +   SP   YSP+SP + SPTSP YSP+S 
Sbjct: 1526 AFSPIRQAGSETPAGFTEYQAPGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSS- 1584

Query: 1616 AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPAYSPTSPGY 1673
             YSPTSP  S TSP +  +SP +SP SP ++PTSP+YSPTSP Y  SPTSP+YSPTSPG+
Sbjct: 1585 GYSPTSPGMSITSPRFM-SSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGF 1643

Query: 1674 SP---------------------TSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSP 1712
            SP                     TSPSYSPTSP    ++  +   ++  SP   Y+P+SP
Sbjct: 1644 SPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGSTGRHLSPTSPTSPK--YTPTSP 1701

Query: 1713 RLSPASP--YSPTSPNYS--PTSSSYSPTSPSYSPSSPTYSPSSPY 1754
              SP SP  YSPTSPN+S  PTS    PTSP YSP+SPT+SP+SP+
Sbjct: 1702 GWSPTSPETYSPTSPNFSGSPTSPG-GPTSPGYSPTSPTFSPTSPH 1746



 Score =  147 bits (370), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 113/223 (50%), Positives = 143/223 (64%), Gaps = 26/223 (11%)

Query: 1574 SYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPA--YSPTSP-AYSPTSPAYSPTSP 1629
            ++SP   + S T   ++   +P +S     +   SP   YSP+SP   SPTSP YSP+S 
Sbjct: 1526 AFSPIRQAGSETPAGFTEYQAPGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSS- 1584

Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY--SPTSPSYSPTSPTY 1687
             YSPTSP  S TSP +  +SP +SP SP ++PTSPAYSPTSPGY  SPTSPSYSPTSP +
Sbjct: 1585 GYSPTSPGMSITSPRFM-SSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGF 1643

Query: 1688 SPTSPSYNPQSAKY----------SPSLAYSPSSPRLSPA-----SPYSPTSPNYSPTSS 1732
            SPTSPSY+P S  +          SPS  YSP+SP L  +     SP SPTSP Y+PTS 
Sbjct: 1644 SPTSPSYSPTSPSFSPASPAFSPTSPS--YSPTSPALGGSTGRHLSPTSPTSPKYTPTSP 1701

Query: 1733 SYSPTSP-SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
             +SPTSP +YSP+SP +S S     G  +P YSP+SP +SP++
Sbjct: 1702 GWSPTSPETYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFSPTS 1744



 Score = 68.6 bits (166), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 76/139 (54%), Gaps = 29/139 (20%)

Query: 1658 SYSPTSPAYSPTSPGYSP-TSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSP 1716
            ++SP   A S T  G++   +P +S            ++P  A+ SP   YSPSSP  + 
Sbjct: 1526 AFSPIRQAGSETPAGFTEYQAPGFSG----------GFSPHGAR-SPGGGYSPSSPFNT- 1573

Query: 1717 ASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-G 1775
                SPTSP YSP SS YSPTSP  S +SP +  S         P +SP+SP ++P++  
Sbjct: 1574 ----SPTSPRYSP-SSGYSPTSPGMSITSPRFMSS---------PGFSPASPVFAPTSPA 1619

Query: 1776 YSPSAPGYSPSSTS-QYTP 1793
            YSP++PGY  S TS  Y+P
Sbjct: 1620 YSPTSPGYQQSPTSPSYSP 1638


>gi|119186393|ref|XP_001243803.1| hypothetical protein CIMG_03244 [Coccidioides immitis RS]
 gi|392870516|gb|EAS32326.2| DNA-directed RNA polymerase II largest subunit [Coccidioides immitis
            RS]
          Length = 1750

 Score = 1672 bits (4329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 909/1777 (51%), Positives = 1193/1777 (67%), Gaps = 154/1777 (8%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTI 60
             +FP+S A +  ++ +QFG+LSP+EI++MSVV +E+ ET +  R +P+  GL+DPRLGTI
Sbjct: 4    VKFPFSKAPLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEARQRPREKGLNDPRLGTI 63

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DR  +C TC   + +CPGHFGH+EL+ P+FHIGF+  +  ++ +VC NC KI A+  D K
Sbjct: 64   DRNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTSDQK 123

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK--KNKGGCGAQQPKL 178
            +  AL+ R+PK R   I    K+   CE     D     G+E  K  K  GGCG  QP++
Sbjct: 124  YLDALRFRDPKRRFDAIWRLSKDVLICEADPPPDDDDPFGKESSKIVKGHGGCGNAQPQI 183

Query: 179  TIEGMKMIAEYKAQRKKN--DDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
              EG+ ++  +K  + ++  DD + Q PE    K+ +T +  L + + +S+ED ++LGL+
Sbjct: 184  RKEGISLVGTWKPNKMRDMMDDTDIQQPE----KKQITPQMALNIFRNVSEEDVRILGLS 239

Query: 236  PKYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WM++ VLP+PPPPV             R  DDLT++LA IIR N+N+ R E+ 
Sbjct: 240  NDYARPEWMVITVLPVPPPPVRPSVLVGGSSGGQRGEDDLTYKLAEIIRANQNVTRCEQE 299

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P H++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I  RLK KEGR+R NLMG
Sbjct: 300  GSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMG 359

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT DP +++D++GVP SIA  LTYPE VTPYNI +L +LV+ GP   PG 
Sbjct: 360  KRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKLGQLVDNGPDVHPG- 418

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
              A+Y+IR  G+R+DLR+ K     + L+ G++VERHL DGD +LFNRQPSLHK S+M H
Sbjct: 419  --ARYVIRSSGERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFNRQPSLHKESMMAH 476

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
            R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L +VP  IVSPQ N 
Sbjct: 477  RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVSPQRNG 536

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
            P+MGIVQDTL G  KI +RD F+ K+  MN+++W  ++DG +PQP ILKPRP WTGKQ+ 
Sbjct: 537  PLMGIVQDTLCGIYKICRRDVFLTKEQVMNMMLWVPEWDGVLPQPAILKPRPRWTGKQMI 596

Query: 582  NLIIPKQINLFRTAAWHADNDKGILTAG-----DTLVRIEKGELLSGTLCKKTLGTSTGS 636
            ++++P  +NL R      D DK  L        DT + +  GEL+ G   KKT+G + G 
Sbjct: 597  SMVLPSGLNLLR-----VDRDKVPLAEKFSPLTDTGLLVHGGELMYGMFSKKTVGATGGG 651

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            +IH I+ E GP+    F    Q +VNYWLL N FSIGIGDTI D  T++ I + +   K 
Sbjct: 652  IIHTIYNEYGPEVCMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDLATIQKIEEAVRIRKE 711

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
             V ++   A + +LEP PG ++ E+FE+KV++ LN ARDEAG+  +KSL + NN   M  
Sbjct: 712  EVDSITLSATENTLEPLPGMSVRETFESKVSRALNNARDEAGTETEKSLKDLNNAVQMAR 771

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
            +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGL
Sbjct: 772  SGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGL 831

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
            TP EFFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGDVIQFLY
Sbjct: 832  TPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQFLY 891

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEEN-WNPNYMLQEYIDDLKTIKELR 934
            GEDG+D  +IE+Q +D ++    +F   FR + MD EN  +P   L E   ++    E++
Sbjct: 892  GEDGLDGAFIENQRVDVIRCSDEQFRNRFRIDLMDPENSLSPE--LLEQATEITGDMEVQ 949

Query: 935  DVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPME 994
               D E ++L+ DR  L + +A   +    LP+N++R++ +A+ TF++     SD+HP +
Sbjct: 950  RYLDEEWEQLQKDRAFLRS-VAKEDEEMMQLPINVQRILESAKTTFRIREGTISDLHPAD 1008

Query: 995  VVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWV 1054
            V+  V  L +RL VV G+D +S EAQ+NATL F   LRS  A KR++ E+ L + AF+ V
Sbjct: 1009 VIPQVQGLLDRLVVVRGDDVISKEAQENATLLFKAQLRSRLAFKRLVVEYSLNKLAFQHV 1068

Query: 1055 IGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII 1114
            +G IESRF ++   PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+
Sbjct: 1069 LGAIESRFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIL 1128

Query: 1115 NVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEE 1174
            NVA  IKTPS++V+  P     KE AK ++  +E+T LRSVTEATE++YDPD   T+IE 
Sbjct: 1129 NVATHIKTPSMTVYQDPARAMDKESAKQLRSVVEHTNLRSVTEATEIYYDPDIQSTVIEA 1188

Query: 1175 DVEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLT 1232
            D + V+SY+ +P ED+  +  + S WLLRI L+R  ++DK L++  VA KI + +  D+ 
Sbjct: 1189 DRDMVESYFIIP-EDVMDDLSRQSKWLLRIILSRPKLLDKGLTVQDVAMKIKESYPQDIA 1247

Query: 1233 CIFNDDNADKLILRIRIMNDEAPK-GELNDESAEDDVFLKKIESNMLTEMALRGV----- 1286
             IF+D+NAD+ ++RIR + D  PK  E +D+  E DV LKK+E+++L  + LRGV     
Sbjct: 1248 VIFSDNNADEQVIRIRQIQD--PKQDEEDDDDTEYDVTLKKLEAHLLDTLTLRGVAGVER 1305

Query: 1287 ------------------------------------NLLAVMCHEDVDARRTTSNHLIEI 1310
                                                 L  V+    VDA RT SN  +EI
Sbjct: 1306 AFINEKSRVRTLEDGSLYKNSEDPQCKEWVLETSGSALGDVLAIPGVDATRTYSNQFVEI 1365

Query: 1311 IEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG 1370
            +EV GIEA R ALL EL  V++FDGSYVN+RHLA+LCD MT RG LMA+TRHGINR DTG
Sbjct: 1366 LEVFGIEATRTALLRELTQVLAFDGSYVNHRHLALLCDVMTSRGFLMAVTRHGINRADTG 1425

Query: 1371 PMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEML----- 1425
             +MRCSFEETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+  +YL+  ML     
Sbjct: 1426 ALMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQNMLMGVVS 1485

Query: 1426 KNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPY- 1484
             NA  + + +  +GL      A    SG+P  + M    Y+ SP+       D+QFSP  
Sbjct: 1486 NNAGLVTMGNVDKGL-ISDGAATQYDSGSPMQENM----YISSPD------PDSQFSPIG 1534

Query: 1485 -------VGGMAFSPTSSPGYSPSSP----GYSPSSP-GYSPTSPGYSPTSPGYSPTSPG 1532
                    G   + P    G+SP+      GYSP+SP   SPTSPGYSP+S GYSPTSPG
Sbjct: 1535 QTGSETPAGFTEYQPPGFGGFSPAGARSPGGYSPTSPFNTSPTSPGYSPSS-GYSPTSPG 1593

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY----SPTSPSYSPTSPSY------ 1582
             S TSP Y  +SPG+SP SP ++PTSP+YSPTSP Y    SPTSPSYSPTSP +      
Sbjct: 1594 MSITSPRYM-TSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPS 1652

Query: 1583 ---------------SPTSPSYSPTSPSYSPTSPSY----SPTSPAYSPTSPAYSPTSP- 1622
                           SPTSPSYSPTSP+    +  +    SPTSP Y+PTSP +SPTSP 
Sbjct: 1653 YSPTSPSFSPASPAFSPTSPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSPE 1712

Query: 1623 AYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSP 1657
            AYSPTSP++  SPTSP   PTSP YSPTSP+++PTSP
Sbjct: 1713 AYSPTSPNFAGSPTSPG-GPTSPGYSPTSPTFNPTSP 1748



 Score =  155 bits (391), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 118/230 (51%), Positives = 147/230 (63%), Gaps = 35/230 (15%)

Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP-AYSPTSPAYSP 1626
            +SP   + S T   ++   P      P +   SP+ + +   YSPTSP   SPTSP YSP
Sbjct: 1530 FSPIGQTGSETPAGFTEYQP------PGFGGFSPAGARSPGGYSPTSPFNTSPTSPGYSP 1583

Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY----SPTSPSYSP 1682
            +S  YSPTSP  S TSP Y  TSP +SP SP+++PTSPAYSPTSPGY    SPTSPSYSP
Sbjct: 1584 SS-GYSPTSPGMSITSPRYM-TSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTSPSYSP 1641

Query: 1683 TSPTYSPTSPSYNPQSAKY----------SPSLAYSPSSPRLSPA-----SPYSPTSPNY 1727
            TSP +SPTSPSY+P S  +          SPS  YSP+SP L  A     SP SPTSP Y
Sbjct: 1642 TSPGFSPTSPSYSPTSPSFSPASPAFSPTSPS--YSPTSPALGGATGRHLSPTSPTSPKY 1699

Query: 1728 SPTSSSYSPTSP-SYSPSSPTY--SPSSPYNAGGGNPDYSPSSPQYSPSA 1774
            +PTS  +SPTSP +YSP+SP +  SP+SP   G  +P YSP+SP ++P++
Sbjct: 1700 TPTSPGWSPTSPEAYSPTSPNFAGSPTSP--GGPTSPGYSPTSPTFNPTS 1747



 Score =  141 bits (355), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/234 (45%), Positives = 139/234 (59%), Gaps = 31/234 (13%)

Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP-AYSPTSPSYSP 1633
            +SP   + S T   ++   P      P +   SPA + +   YSPTSP   SPTSP YSP
Sbjct: 1530 FSPIGQTGSETPAGFTEYQP------PGFGGFSPAGARSPGGYSPTSPFNTSPTSPGYSP 1583

Query: 1634 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY----SPTSPTYSP 1689
            +S  YSPTSP  S TSP Y  TSP +SP SP ++PTSP YSPTSP Y    SPTSP+YSP
Sbjct: 1584 SS-GYSPTSPGMSITSPRYM-TSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTSPSYSP 1641

Query: 1690 TSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS-----------SSYSPTS 1738
            TSP ++P S  YSP+      +     +  +SPTSP+YSPTS           S  SPTS
Sbjct: 1642 TSPGFSPTSPSYSPTSPSFSPA-----SPAFSPTSPSYSPTSPALGGATGRHLSPTSPTS 1696

Query: 1739 PSYSPSSPTYSPSSPYNAGGGNPDY--SPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
            P Y+P+SP +SP+SP      +P++  SP+SP    S GYSP++P ++P+S  Q
Sbjct: 1697 PKYTPTSPGWSPTSPEAYSPTSPNFAGSPTSPGGPTSPGYSPTSPTFNPTSPRQ 1750



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 97/207 (46%), Gaps = 64/207 (30%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP-SYSPTSPTYSP 1689
            +SP   + S T   ++   P      P +   SPA + +  GYSPTSP + SPTSP YSP
Sbjct: 1530 FSPIGQTGSETPAGFTEYQP------PGFGGFSPAGARSPGGYSPTSPFNTSPTSPGYSP 1583

Query: 1690 TSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY-------- 1741
            +S               YSP+SP +S  SP   TSP +SP S +++PTSP+Y        
Sbjct: 1584 SS--------------GYSPTSPGMSITSPRYMTSPGFSPASPTFAPTSPAYSPTSPGYG 1629

Query: 1742 ---SPSSPTYSPSSP--------------------YNAGGGNPDYSPSSPQYSPSAG--- 1775
               SP+SP+YSP+SP                          +P YSP+SP    + G   
Sbjct: 1630 QAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGATGRHL 1689

Query: 1776 ---------YSPSAPGYSPSSTSQYTP 1793
                     Y+P++PG+SP+S   Y+P
Sbjct: 1690 SPTSPTSPKYTPTSPGWSPTSPEAYSP 1716


>gi|225677609|gb|EEH15893.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
            brasiliensis Pb03]
          Length = 2106

 Score = 1672 bits (4329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 903/1768 (51%), Positives = 1185/1768 (67%), Gaps = 136/1768 (7%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTI 60
             +FPYS A++  ++ +QFG+LSP+EI++MSVV +E+ ET   +R +P+  GL+DPRLGTI
Sbjct: 4    VKFPYSKAQLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEQRQRPREKGLNDPRLGTI 63

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DR  +C TC   + +CPGHFGH+EL+ P+FHIGF+  +  ++ +VC NC KI A+ +D K
Sbjct: 64   DRNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTNDQK 123

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK--KNKGGCGAQQPKL 178
            + +AL+ R+PK R   I    K+   CE     D      +E  K  ++ GGCG  QP++
Sbjct: 124  YLEALRFRDPKRRFDAIWRLSKDVLICEADPTPDDDDPFSKEASKPVRSHGGCGNMQPQI 183

Query: 179  TIEGMKMIAEYKAQRKKN--DDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
              EG+ ++  +K  + ++  DD + Q PE    K+ +T +  L + + IS+ED +L+GL+
Sbjct: 184  RKEGISLVGTWKPNKNRDMMDDMDIQQPE----KRQITPQMALNIFRNISEEDVRLMGLS 239

Query: 236  PKYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WMI+ VLP+PPPPV             R  DDLT++LA I+R N+N+ R E+ 
Sbjct: 240  NDYARPEWMIITVLPVPPPPVRPSVLVGGSGSGQRGEDDLTYKLAEIVRANQNVTRCEQE 299

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P H++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I  RLK KEGR+R NLMG
Sbjct: 300  GSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMG 359

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT DP +++D++GVP SIA  LTYPE VTP+NI +L ELV+ GP   PG 
Sbjct: 360  KRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPFNIAKLGELVDNGPDIHPG- 418

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
              A+Y+IR  G+R+DLR+ K     + L+ G++VERH+ DGD +LFNRQPSLHK S+M H
Sbjct: 419  --ARYVIRSTGERIDLRHHKGGGGRNFLQYGWRVERHIVDGDVILFNRQPSLHKESMMAH 476

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
            R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L MVP  IVSPQ N 
Sbjct: 477  RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVSPQRNG 536

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
            P+MGIVQDTL G  KI +RD F+ K+  MNIL+W  D+DG +PQP ILKPRP WTGKQ+ 
Sbjct: 537  PLMGIVQDTLCGIYKICRRDVFLSKEQVMNILLWVPDWDGVIPQPAILKPRPRWTGKQLI 596

Query: 582  NLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            ++++P  +NL R     A   +      D  V +  GEL+ G   KKT+G + G +IH I
Sbjct: 597  SMVLPPGLNLLRVDRDRAPRSEKFSPPADGGVLVHGGELMYGMFSKKTVGATGGGIIHTI 656

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E GP+ A  F    Q +VNYWLL + FSIGIGDTI D  T++ I + +   K  V ++
Sbjct: 657  FNEYGPETAMNFFNGAQTVVNYWLLHHGFSIGIGDTIPDLPTIQKIENAVRVRKEEVDDI 716

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
               A D +LEP PG  + E+FE+KV++ LN ARDEAG+  +KS  + NN   M  +GSKG
Sbjct: 717  TASATDNTLEPLPGMNVRETFESKVSRALNNARDEAGTETEKSFKDLNNAVQMARSGSKG 776

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EF
Sbjct: 777  SIINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEF 836

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGDV+QFLYGEDG+
Sbjct: 837  FFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVVQFLYGEDGL 896

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQ--EYIDDLKTIKELRDVF 937
            D   IE+Q +D +K    +F + FR + MD E   +PN + Q  E   D+    E++   
Sbjct: 897  DGAHIENQRVDIIKCSDEKFRERFRVDLMDPERTLSPNVLEQATEIAGDI----EVQTYL 952

Query: 938  DAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVE 997
            D E ++L  DR  + T  A   D    LP+N++R++ +A+  F++     SD+HP EV+ 
Sbjct: 953  DEEWEQLLKDRAFMRTA-AKEDDEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVIP 1011

Query: 998  AVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGE 1057
             V  L +RL VV G+D +S EAQ++ATL F   LRS  A +R++ E+ L + AF+ V+G 
Sbjct: 1012 QVRALLDRLVVVRGDDVISREAQESATLLFKAQLRSRLAFRRLVTEYSLNKLAFQHVLGA 1071

Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
            IE+RF +++  PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA
Sbjct: 1072 IENRFSRAMANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVA 1131

Query: 1118 KKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVE 1177
              IKTPS++V+        KE AK ++  +E+T+LRSVTEATE++YDPD   T+IE D +
Sbjct: 1132 THIKTPSMTVYQDSSRAMDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVIEADRD 1191

Query: 1178 FVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIF 1235
             V+SY+ +P ED+A +  + S WLLRI L+R  ++DK L++  VA +I   +  D+  IF
Sbjct: 1192 MVESYFIIP-EDVADDSSRQSKWLLRIILSRPKLLDKNLTVQDVAMRIKDAYPQDIAVIF 1250

Query: 1236 NDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAV---- 1291
            +D+NAD+ ++RIR + D   K + +D+  E DV LKK+E ++L  + LRGV  +      
Sbjct: 1251 SDNNADEQVIRIRQIQDT--KQDDDDDDTEYDVTLKKLEGHLLDTLTLRGVAGIERAFIN 1308

Query: 1292 --------------------MCHE-----------------DVDARRTTSNHLIEIIEVL 1314
                                +C E                  VD  RT SN  +EI+EV 
Sbjct: 1309 EKSRVRVLEDGSLHQSSEDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQFVEILEVF 1368

Query: 1315 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
            GIEA R ALL EL  V++FDGSYVN+RHLA+L D MT RG LMA+TRHGINR DTG +MR
Sbjct: 1369 GIEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMR 1428

Query: 1375 CSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQ-- 1432
            CSFEETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+  +YL+  ML   +     
Sbjct: 1429 CSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQNMLMGVVSSNAG 1488

Query: 1433 -LPSYMEGLEFGMTPARSPVSGTPYHDGMM----SPGYLFSPNLRLSPVTDAQFSPYVGG 1487
             + +  +GL  G   A    S +P  D M      P   FSP  +    T A F+ Y   
Sbjct: 1489 LMTADGKGL-LGDGAATPYDSNSPLQDNMYIGTPDPDSAFSPIRQAGSETPAGFTEYQ-- 1545

Query: 1488 MAFSPTSSPGYSPSSP-----GYSPSSP-GYSPTSPGYSPTSPGYSPTSPGYSPTSPTYS 1541
               +P  S G+SP        GYSPSSP   SPTSP YSP+S GYSPTSPG S TSP + 
Sbjct: 1546 ---APGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSS-GYSPTSPGMSITSPRFM 1601

Query: 1542 PSSPGYSPTSPAYSPTSPSYSPTSPSY--SPTSPSYSPTSPSY----------------- 1582
             SSPG+SP SP ++PTSP+YSPTSP Y  SPTSPSYSPTSP +                 
Sbjct: 1602 -SSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPA 1660

Query: 1583 ----SPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTSPAYSPTSPAYSPTSP-SYSPTSP 1636
                SPTSPSYSPTSP+   ++  + SPT    SPTSP Y+PTSP +SPTSP +YSPTSP
Sbjct: 1661 SPAFSPTSPSYSPTSPALGGSTGRHLSPT----SPTSPKYTPTSPGWSPTSPETYSPTSP 1716

Query: 1637 SY--SPTSPSYSPTSPSYSPTSPSYSPT 1662
            ++  SPTSP   PTSP YSPTSP++SPT
Sbjct: 1717 NFSGSPTSPG-GPTSPGYSPTSPTFSPT 1743



 Score =  149 bits (375), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/225 (50%), Positives = 143/225 (63%), Gaps = 26/225 (11%)

Query: 1574 SYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPA--YSPTSP-AYSPTSPAYSPTSP 1629
            ++SP   + S T   ++   +P +S     +   SP   YSP+SP   SPTSP YSP+S 
Sbjct: 1526 AFSPIRQAGSETPAGFTEYQAPGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSS- 1584

Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY--SPTSPSYSPTSPTY 1687
             YSPTSP  S TSP +  +SP +SP SP ++PTSPAYSPTSPGY  SPTSPSYSPTSP +
Sbjct: 1585 GYSPTSPGMSITSPRFM-SSPGFSPASPVFAPTSPAYSPTSPGYQQSPTSPSYSPTSPGF 1643

Query: 1688 SPTSPSYNPQSAKY----------SPSLAYSPSSPRLSPA-----SPYSPTSPNYSPTSS 1732
            SPTSPSY+P S  +          SPS  YSP+SP L  +     SP SPTSP Y+PTS 
Sbjct: 1644 SPTSPSYSPTSPSFSPASPAFSPTSPS--YSPTSPALGGSTGRHLSPTSPTSPKYTPTSP 1701

Query: 1733 SYSPTSP-SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGY 1776
             +SPTSP +YSP+SP +S S     G  +P YSP+SP +SP+  +
Sbjct: 1702 GWSPTSPETYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFSPTCSF 1746



 Score = 69.3 bits (168), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/139 (39%), Positives = 76/139 (54%), Gaps = 29/139 (20%)

Query: 1658 SYSPTSPAYSPTSPGYSP-TSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSP 1716
            ++SP   A S T  G++   +P +S            ++P  A+ SP   YSPSSP  + 
Sbjct: 1526 AFSPIRQAGSETPAGFTEYQAPGFSG----------GFSPHGAR-SPGGGYSPSSPFNT- 1573

Query: 1717 ASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-G 1775
                SPTSP YSP SS YSPTSP  S +SP +  S         P +SP+SP ++P++  
Sbjct: 1574 ----SPTSPRYSP-SSGYSPTSPGMSITSPRFMSS---------PGFSPASPVFAPTSPA 1619

Query: 1776 YSPSAPGYSPSSTS-QYTP 1793
            YSP++PGY  S TS  Y+P
Sbjct: 1620 YSPTSPGYQQSPTSPSYSP 1638


>gi|324120510|dbj|BAJ78646.1| RNA polymerase II largest subunit [Pedetontus unimaculatus]
          Length = 1549

 Score = 1671 bits (4328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 857/1584 (54%), Positives = 1096/1584 (69%), Gaps = 117/1584 (7%)

Query: 23   LSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHF 80
            LSPDEIR+MSV +  I   E  E G+PK GGL DPR G IDR+ +C+TC  NM ECPGHF
Sbjct: 1    LSPDEIRRMSVTEGGIRFSEIYEGGRPKLGGLMDPRQGVIDRQSRCQTCAGNMTECPGHF 60

Query: 81   GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-ALKIR-NPKNRLKKIL 138
            GH++L KP+FHIGF+   + I+R VCF CSK+L +  + K K+  +K +  P+ RL  + 
Sbjct: 61   GHIDLGKPVFHIGFITKTIKILRCVCFYCSKMLVNPTNPKIKEIVMKSKGQPRKRLAHVY 120

Query: 139  DACKNKTKCEGGDEIDVPGQDGEEP-----LKKNKGGCGAQQPKLTIEGMKMIAEYKAQR 193
            D CK K  CEGGDE+D+   + ++P      K+  GGCG  QP +    + + AE+K   
Sbjct: 121  DLCKGKNICEGGDEMDIQKDNPDDPSGMQGKKQGHGGCGRYQPNIRRIALDLTAEWK--- 177

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
              N+D +      E+K  LTAERV  + K ISDE+C +LG++PKYARPDWMI+ VLP+PP
Sbjct: 178  HVNEDSQ------EKKIVLTAERVWEIFKHISDEECFILGMDPKYARPDWMIVTVLPVPP 231

Query: 254  PPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
              VRP+          DDLTH+LA II+ N  L R E+ GA AH+I+E  ++LQFH+AT 
Sbjct: 232  LAVRPAVVMYGSARNQDDLTHKLADIIKANNELLRNEQAGAAAHVIAENIKMLQFHVATL 291

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++PG PRA Q+SGRP+K++ +RLK KEGRIRGNLMGKRVDFSARTVITPDP + IDQ
Sbjct: 292  VDNDMPGLPRAMQKSGRPLKALKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQ 351

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA NLT+PE VTP+NI+++++LV  G    PG   AKYIIRD+G+R+DLR+  K
Sbjct: 352  VGVPRSIAQNLTFPEIVTPFNIDKMQDLVRRGNSQYPG---AKYIIRDNGERIDLRFHPK 408

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
             SD HL+ GYKVERH+ +GD ++FNRQP+LHKMS+MGHR+K++P+STFR+NLSVTSPYNA
Sbjct: 409  PSDLHLQCGYKVERHIREGDLIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYNA 468

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETRAEV  + +  + I++PQ+N+PVMGIVQDTL   RK+TKRD F
Sbjct: 469  DFDGDEMNLHVPQSMETRAEVENIHITARQIITPQANKPVMGIVQDTLTAVRKMTKRDVF 528

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            +EK+  MN+LM    +DGK+PQP ILKP+P+WTGKQVF+LIIP  +N+ RT + H D+ D
Sbjct: 529  LEKEQMMNLLMHLPIWDGKMPQPAILKPKPMWTGKQVFSLIIPGNVNMIRTHSTHPDDED 588

Query: 603  KG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW 659
             G    ++ GDT V +E GEL+ G LCKKTLG S GSL+H+   E+G + A +F G+ Q 
Sbjct: 589  DGPYKWISPGDTKVMVEHGELVMGILCKKTLGASAGSLLHICMLELGHEVAGRFYGNIQT 648

Query: 660  LVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMM 719
            ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A +  LEP PG T+ 
Sbjct: 649  VINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTLR 708

Query: 720  ESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 779
            ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVE
Sbjct: 709  QTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVE 768

Query: 780  GKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 839
            GKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT
Sbjct: 769  GKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKT 828

Query: 840  SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKS 899
            +ETGYIQRRL+KAME +MV YDGT+RNS+G +IQ  YGEDG+    +E QT  ++K+   
Sbjct: 829  AETGYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAGETVEFQTQPTIKLSNK 888

Query: 900  EFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSG 959
             F+K F+F+   E +      ++ + +L    E+    + E ++L+ DR  L  +I  +G
Sbjct: 889  AFEKKFKFDPTNERYLRRIFNEDIMKELMGSGEVISELEREWEQLQKDREAL-RQIFPNG 947

Query: 960  DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEA 1019
            D+   LP NL+R+IWN QK F ++ R  +D+ P++V+  V  L  +  +V GED LS  A
Sbjct: 948  DNKAVLPCNLQRMIWNVQKIFHINKRATTDLSPLKVIRGVQNLLSKCIIVAGEDHLSKMA 1007

Query: 1020 QKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQ 1079
             +NATL F  L+R+T  ++RV +E RL+ EAFEW+IGEIE+RF Q+ V PGEM+G +AAQ
Sbjct: 1008 NENATLLFQCLVRATLCTRRVAEEFRLSSEAFEWLIGEIETRFQQAQVQPGEMVGALAAQ 1067

Query: 1080 SIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER 1139
            S+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VFL        E+
Sbjct: 1068 SLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEK 1127

Query: 1140 AKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWL 1199
            AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD D  P KISPWL
Sbjct: 1128 AKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVITEDQEFVNVYYEMPDFD--PTKISPWL 1185

Query: 1200 LRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGEL 1259
            LRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIMN E  K + 
Sbjct: 1186 LRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSEESKFQE 1245

Query: 1260 NDESA---EDDVFLKKIESNMLTEMALRGV------------------------------ 1286
             +E A   EDD+FL+ IE+NML++M L+G+                              
Sbjct: 1246 EEEQADKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIMITDTGEFKAI 1305

Query: 1287 ----------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336
                      +L+ V+   DVD  RT SN + EI  VLGIEAVR+++  E+  V+ F G 
Sbjct: 1306 AEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLQFYGL 1365

Query: 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYL 1396
            YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA  AE D +
Sbjct: 1366 YVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEQDPM 1425

Query: 1397 RGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEF------------GM 1444
            RGV+ENI++GQL  +GTG   L L+ E  K+ IE+ +      +              GM
Sbjct: 1426 RGVSENIIMGQLPRMGTGCFDLLLDSEKCKHGIEIPMNIGAGMMGGAGMFYGSAATPSGM 1485

Query: 1445 TPARSPVS--GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSS 1502
            +P  +P +  GTP +  + S                       GG  FSP+ S   S  S
Sbjct: 1486 SPQMTPWNQGGTPAYGSVWS--------------PGMGTGMTPGGPGFSPSGSSDASGLS 1531

Query: 1503 PGYSPSSPGYSPT-SPGY-SPTSP 1524
            PG      GYSP  SP + SP+SP
Sbjct: 1532 PG------GYSPIWSPQHGSPSSP 1549


>gi|324120528|dbj|BAJ78655.1| RNA polymerase II largest subunit [Phraortes illepidus]
          Length = 1563

 Score = 1671 bits (4327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 844/1557 (54%), Positives = 1090/1557 (70%), Gaps = 97/1557 (6%)

Query: 23   LSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHF 80
            +SPDEIR+MSV +  I   ET E G+PK GGL DPR G IDR  +C+TC  N  EC GHF
Sbjct: 1    ISPDEIRRMSVTEGGIRFSETMEGGRPKLGGLMDPRQGVIDRNSRCQTCAGNQTECAGHF 60

Query: 81   GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NPKNRLKKIL 138
            GH+ LAKP+FH+GF+   + I+R VCF CSK+L    + K K+ +      P+ RL  + 
Sbjct: 61   GHINLAKPVFHVGFLTKTIKILRCVCFYCSKLLVSPTNPKIKEVVMKSKGQPRKRLTFVY 120

Query: 139  DACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKK 195
            D CK K  CEGGDE+D+  +D    ++P K   GGCG  QP +   G+ + AE+K     
Sbjct: 121  DLCKGKNICEGGDEMDIQKEDDPNSQQPRKAGHGGCGRYQPSIRRAGLDLTAEWK---HV 177

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
            N+D +      E+K +L+AERV  +L+ I+DE+C +LG++PK+ARPDWMI+ VLP+PP  
Sbjct: 178  NEDSQ------EKKISLSAERVWEILRHITDEECFILGMDPKFARPDWMIVTVLPVPPLC 231

Query: 256  VRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
            VRP+          DDLTH+LA II+ N  L R E+ GA AH++++  ++LQFH+AT  D
Sbjct: 232  VRPAVVMYGSARNQDDLTHKLADIIKSNNELVRNEQAGAAAHVVADNIKMLQFHVATLVD 291

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            N++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + IDQ+G
Sbjct: 292  NDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 351

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP SIA N+T+PE VTP+NI+++++LV  G    PG   AKYI+RD+G+R+DLR+  KSS
Sbjct: 352  VPRSIAQNMTFPEIVTPFNIDKMQDLVRRGNSQYPG---AKYIVRDNGERIDLRFHPKSS 408

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
            D HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+STFR+NLS TSPYNADF
Sbjct: 409  DLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADF 468

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL   RK+TKRD F+E
Sbjct: 469  DGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFLE 528

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKG 604
            K+  MN+LM+   +DGK+PQP ILKP+PLWTGKQVF+LIIP  +N+ RT + H D  D G
Sbjct: 529  KEQMMNLLMFLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDEEDDG 588

Query: 605  ---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
                ++ GDT V +E GEL+ G LCKKTLG S GSL+H+ + E+G +    F G+ Q ++
Sbjct: 589  PYRWISPGDTKVMVEHGELVMGILCKKTLGASAGSLLHICFLELGHEVCGLFYGNIQTVI 648

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            N WLL    SIGIGDTIAD +T   I   I KAK +V  +I +A +  LEP PG T+ ++
Sbjct: 649  NNWLLLEGHSIGIGDTIADPQTYMEIQRAIKKAKEDVIEVIHKAHNMELEPTPGNTLRQT 708

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV AGSKGS INISQ+ ACVGQQNVEGK
Sbjct: 709  FENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGK 768

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKT+E
Sbjct: 769  RIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAE 828

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E Q L ++K+    F
Sbjct: 829  TGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGESVEFQNLPTVKLSNRSF 888

Query: 902  DKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDS 961
            +K F+F+   E        ++ + +L    ++    D E   L  DR ++  +I  SG+S
Sbjct: 889  EKKFKFDSTNERHLRRIFNEDVLRELLGSNDVISELDGEWDLLCKDR-EMLRQIFPSGES 947

Query: 962  SWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQK 1021
               LP NL+R+IWN QK F ++ R P+D+ P++V++ V+ L ++  +V GED LS +A +
Sbjct: 948  KVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLKVIQGVNNLLKKCVIVAGEDHLSKQANE 1007

Query: 1022 NATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            NATL F  L+RST  +K V +E RL+ EAFEW+IGEIE+RF Q+  APGEM+G +AAQS+
Sbjct: 1008 NATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSL 1067

Query: 1082 GEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAK 1141
            GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VFL        E+AK
Sbjct: 1068 GEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAARDAEKAK 1127

Query: 1142 NVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLR 1201
            NV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD D  P +ISPWLLR
Sbjct: 1128 NVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFD--PTRISPWLLR 1185

Query: 1202 IELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGE--- 1258
            IEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIMN +  K +   
Sbjct: 1186 IELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNKFQEEE 1245

Query: 1259 -LNDESAEDDVFLKKIESNMLTEMALRGV------------------------------- 1286
                +  EDD+FL+ IE+NML++M L+G+                               
Sbjct: 1246 EEMMDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDAKKRIVVTDTGEFKAIA 1305

Query: 1287 ---------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSY 1337
                     +++ V+   DVD  RT SN + EI  VLGIEAVR+++  E+  V++F G Y
Sbjct: 1306 EWLLETDGTSMMKVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKEMNTVLNFYGLY 1365

Query: 1338 VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLR 1397
            VNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+DAA  AE D +R
Sbjct: 1366 VNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMDAASHAEVDPMR 1425

Query: 1398 GVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEF-------GMTPARSP 1450
            GV+ENI++GQL  +GTG   L L+ E  K  IE+ +      +           TP+ SP
Sbjct: 1426 GVSENIIMGQLPRLGTGAFDLLLDAEKCKAGIEIPMSVGAGMMGGAGMFFGSAATPSMSP 1485

Query: 1451 VSGTPYHDGMMSPGY--LFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGY 1505
               TP++ G  +P Y  ++SP      V  +  +P  GG +FSP+ +   S  SPGY
Sbjct: 1486 -QLTPWNQG-ATPAYGSIWSP----GNVLGSGMTP--GGPSFSPSGASDASGMSPGY 1534


>gi|396481989|ref|XP_003841371.1| similar to DNA-directed RNA polymerase ii largest subunit
            [Leptosphaeria maculans JN3]
 gi|312217945|emb|CBX97892.1| similar to DNA-directed RNA polymerase ii largest subunit
            [Leptosphaeria maculans JN3]
          Length = 1875

 Score = 1670 bits (4326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 898/1769 (50%), Positives = 1184/1769 (66%), Gaps = 154/1769 (8%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDRKMK 65
            S   +  ++ +QFG+LSP+EI+ MSVV I + ET   ++ KP+  GL+DPRLGTIDR   
Sbjct: 147  SKCSLRTIKEIQFGLLSPEEIKAMSVVHIIYPETMDEQKQKPRDQGLNDPRLGTIDRMYS 206

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C TC  ++  CPGHFGH+ELA P+FH+GF+  +  I+ +VC NC  ILAD +  +++ A+
Sbjct: 207  CATCKEDIQVCPGHFGHIELATPVFHVGFVIKIKKILETVCHNCGLILADFNRPEWQAAI 266

Query: 126  KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQP-KLTIEGMK 184
            K ++ K R +KI    K +T+CE   E D P +  + P     GGCG+  P  +  EG+K
Sbjct: 267  KTKDAKKRFEKIWRLSKIRTRCEQTAEDDDPKKAPKIP----HGGCGSDAPDAIRKEGLK 322

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + A YK+++K  DD        +RK+ +T +  L + K +SD   QLLGLN  YARP+WM
Sbjct: 323  LTATYKSKKKDEDDGTG-----DRKEPITPQLALNIFKLLSDNTLQLLGLNADYARPEWM 377

Query: 245  ILQVLPIPPPP-------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            IL VLP+PPPP             +R  DDLT++L  IIR N  ++   + G+P H+++E
Sbjct: 378  ILTVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANGRVQECIQEGSPQHVLNE 437

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
            F  L+Q+H+ATY DN+  G P+A Q+SGRP+K+I  RLK KEGR+RGNLMGKRVDFSART
Sbjct: 438  FEALVQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDFSART 497

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VIT DP +++DQ+GVP SIA  LTYPE VT +NI +L  LV  GP+  PG   A Y+I+ 
Sbjct: 498  VITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTALVRNGPNQHPG---ANYVIKA 554

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            DG RLDL++ K   D  L+ G+KVERH++D D ++FNRQPSLHK S+MGHR+K+MPYSTF
Sbjct: 555  DGVRLDLKHNKNLDDLRLQYGWKVERHIDDDDVIIFNRQPSLHKESMMGHRVKVMPYSTF 614

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            RLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV  L MVPK IVSPQ N+P+MGIVQDTL
Sbjct: 615  RLNLSVTSPYNADFDGDEMNLHVPQSDETRAEVQNLCMVPKQIVSPQKNQPLMGIVQDTL 674

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
            LG  K+++RD F+  +  MNILMW  D+DG VP+P ILKPRPLW+GKQ+ ++ I K++N+
Sbjct: 675  LGVYKMSRRDNFLPLEQVMNILMWVPDWDGIVPEPAILKPRPLWSGKQIISMTIAKEVNI 734

Query: 592  FRTAA------WHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
             R         ++  NDK +L  G        GEL+ G + KK +G + G +IH+I+ E+
Sbjct: 735  VRADGDSKPEPYNDLNDKSLLIMG--------GELILGAVTKKIVGATAGGIIHIIFNEI 786

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
              DAA KF    Q +VN+WLL + FS G+GDTI D  T   I + I K+K +V+ +I +A
Sbjct: 787  SSDAAVKFFNACQRVVNWWLLYHGFSFGVGDTIPDPATAAAIAEAIQKSKKDVEEVIVKA 846

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LEP PG T+  +FE+KV + LN  R+  G++AQ SL + NN+   V +GSKGS +N
Sbjct: 847  TKNELEPLPGMTIRGTFESKVQKFLNEGREGGGTAAQNSLKDFNNVVQTVVSGSKGSTVN 906

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQM A VGQQ VEG+RIP+GF  RTLPHFTKDDY P+SRGFVENSYLRGLTP EFFFHA
Sbjct: 907  ISQMVALVGQQAVEGQRIPYGFKYRTLPHFTKDDYSPQSRGFVENSYLRGLTPSEFFFHA 966

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+MVKYDGTVRNS+GD+++F+YGEDG+D   
Sbjct: 967  MAGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSMGDIVEFIYGEDGLDGGH 1026

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEEN--------WNPNYMLQEYIDDLKTIKELRDVF 937
            IE Q++ S+K   ++F+  ++ ++   +        W      Q  +D  + +       
Sbjct: 1027 IEEQSIGSIKSSWAKFETTYKLDLVSTDKPMIPVTKWEGATQFQGDVDAQRYL------- 1079

Query: 938  DAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP-SDMHPMEVV 996
            D E  ++  DR  L T +A      + LP+N+ R+I +AQ  FK+  R+  S++HP+E +
Sbjct: 1080 DEEFAQITKDREFLRTMLAADASDKFQLPLNIDRIIKSAQARFKIKTRQSVSNLHPIETI 1139

Query: 997  EAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIG 1056
            E V KL + L V+ G DPLS EAQ + T  F   LRS  A K ++++ R++REA ++V+G
Sbjct: 1140 EKVRKLLDSLVVIRGNDPLSREAQDSVTHLFKCHLRSRLAFKLLVQQERMSREALDYVLG 1199

Query: 1057 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1116
            E+E RFL++ VAPGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+
Sbjct: 1200 ELEDRFLKAAVAPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNI 1259

Query: 1117 AKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDV 1176
            A  IKTPSL +  +   ++T E A  ++ A+E TTLR++T + E++YDPD   T++EED 
Sbjct: 1260 AANIKTPSL-IVRQENKSATLEDAMALRSAIELTTLRALTASVELYYDPDVNVTVVEEDQ 1318

Query: 1177 EFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
            + V ++  MP++D+  E  S WLLRI L+R+ ++D+ L++  VA KI +EF  +L   ++
Sbjct: 1319 DIVDAFNIMPEDDL--ESQSKWLLRIILDRKKLLDRLLNVTDVAAKIKEEFSPNLAVTYS 1376

Query: 1237 DDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVN--------- 1287
            D+NA++L+LR+R + D   K +  D    D+ +++K+E ++L ++ALRGV          
Sbjct: 1377 DNNAEELVLRVRFIWDANLKQDEEDIEERDERWMRKLEKHLLDDVALRGVRGIERAFIRE 1436

Query: 1288 --------------------------------LLAVMCHEDVDARRTTSNHLIEIIEVLG 1315
                                            L  V+  E VDA +T SN  IE++ VLG
Sbjct: 1437 DARTVETEDGAILHSKSDDRCKEWILDTTGTALAKVLPIEGVDATKTYSNSFIEVLAVLG 1496

Query: 1316 IEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRC 1375
            IEA R  LL EL +V+SFDGSYVN+RH+A+L D MT RG LMAITRHGINRNDTG +MRC
Sbjct: 1497 IEAARAGLLKELGMVLSFDGSYVNHRHMALLVDIMTQRGVLMAITRHGINRNDTGALMRC 1556

Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIE---LQ 1432
            SFEETV+ILL+AA   E D  RG++ENIMLGQLAP+GTG+  + +++ ML   +E     
Sbjct: 1557 SFEETVEILLEAAGHGELDDCRGISENIMLGQLAPMGTGEFDIVMDNAMLLTMVEDNSKM 1616

Query: 1433 LPSYMEGLEFGMTPARSPVS-GTPYHDGMMSPGYL---FSP------------NLRLSPV 1476
            +     G  +    A +P   G+P ++G M  G     FSP                   
Sbjct: 1617 MGGTAAGGNYLDGGAATPYDLGSPTYEGGMGMGSYEAQFSPLAAAGGADDGGFTAYGGGY 1676

Query: 1477 TDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT 1536
             D  FSPY GG       SPG++  SPG+S    G SP SPG+SPTSP YSPTSPG S  
Sbjct: 1677 GDGGFSPYSGG------RSPGFATMSPGFS----GTSPVSPGFSPTSPAYSPTSPGIS-- 1724

Query: 1537 SPTYSPSSPGY--SPTSPAYSPTSPSY-SPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPT 1592
            SP ++ +SPGY  SPTSP YSPTSP Y SPTSPSYSPTSP+ YSPTSP YSP+SP+YSPT
Sbjct: 1725 SPQFAATSPGYMASPTSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPSSPNYSPT 1784

Query: 1593 SPSY-SPTSPSYSPTSPAYSPTSPAYSPTSPAY----------SPTSPSYSPTSPSYSPT 1641
            SPS+   TSP+YSPTSP YSPTSP YSPTSP Y          SPTSP YSPTSP YSPT
Sbjct: 1785 SPSFGGATSPAYSPTSPQYSPTSPQYSPTSPQYQASGDRRSPTSPTSPQYSPTSPRYSPT 1844

Query: 1642 SPS--YSPTSPSYSPTSP----SYSPTSP 1664
            SP+  +SPTSP YSPTSP    SYSPTSP
Sbjct: 1845 SPAGQFSPTSPRYSPTSPGPSNSYSPTSP 1873



 Score =  187 bits (474), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 122/212 (57%), Positives = 140/212 (66%), Gaps = 31/212 (14%)

Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY--S 1639
            +SP S   SP   + SP     SP SP +SPTSPAYSPTSP  S  SP ++ TSP Y  S
Sbjct: 1681 FSPYSGGRSPGFATMSPGFSGTSPVSPGFSPTSPAYSPTSPGIS--SPQFAATSPGYMAS 1738

Query: 1640 PTSPSYSPTSPSY-SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
            PTSP YSPTSP Y SPTSPSYSPTSPA      GYSPTSP YSP+SP YSPTSPS+   +
Sbjct: 1739 PTSPHYSPTSPRYGSPTSPSYSPTSPA------GYSPTSPQYSPSSPNYSPTSPSFGGAT 1792

Query: 1699 AKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTS---SSYSPTSPSYSPSSPTYSPSSPY 1754
                 S AYSP+SP+ SP SP YSPTSP Y  +    S  SPTSP YSP+SP YSP+SP 
Sbjct: 1793 -----SPAYSPTSPQYSPTSPQYSPTSPQYQASGDRRSPTSPTSPQYSPTSPRYSPTSP- 1846

Query: 1755 NAGGGNPDYSPSSPQYS-----PSAGYSPSAP 1781
             AG     +SP+SP+YS     PS  YSP++P
Sbjct: 1847 -AG----QFSPTSPRYSPTSPGPSNSYSPTSP 1873



 Score =  170 bits (431), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 113/213 (53%), Positives = 137/213 (64%), Gaps = 36/213 (16%)

Query: 1593 SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1652
            SP     SP ++  SP +S TSP     SP +SPTSP+YSPTSP  S  SP ++ TSP Y
Sbjct: 1682 SPYSGGRSPGFATMSPGFSGTSP----VSPGFSPTSPAYSPTSPGIS--SPQFAATSPGY 1735

Query: 1653 --SPTSPSYSPTSPAY-SPTSPGYSPTSPS-YSPTSPTYSPTSPSYNPQSAKYSPSLAYS 1708
              SPTSP YSPTSP Y SPTSP YSPTSP+ YSPTSP YSP+SP+             YS
Sbjct: 1736 MASPTSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPSSPN-------------YS 1782

Query: 1709 PSSPRLSPAS--PYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPS 1766
            P+SP    A+   YSPTSP YSPTS  YSPTSP Y  S    SP+SP +     P YSP+
Sbjct: 1783 PTSPSFGGATSPAYSPTSPQYSPTSPQYSPTSPQYQASGDRRSPTSPTS-----PQYSPT 1837

Query: 1767 SPQYSPS--AG-YSPSAPGYSPSS---TSQYTP 1793
            SP+YSP+  AG +SP++P YSP+S   ++ Y+P
Sbjct: 1838 SPRYSPTSPAGQFSPTSPRYSPTSPGPSNSYSP 1870



 Score =  135 bits (341), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/166 (52%), Positives = 106/166 (63%), Gaps = 19/166 (11%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            +SP S   SP   + SP     SP SPG+SPTSP+YSPTSP  S      +PQ A  SP 
Sbjct: 1681 FSPYSGGRSPGFATMSPGFSGTSPVSPGFSPTSPAYSPTSPGIS------SPQFAATSPG 1734

Query: 1705 LAYSPSSPRLSPASPY--SPTSPNYSPTS-SSYSPTSPSYSPSSPTYSPSSPYNAGGGNP 1761
               SP+SP  SP SP   SPTSP+YSPTS + YSPTSP YSPSSP YSP+SP   G  +P
Sbjct: 1735 YMASPTSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPSSPNYSPTSPSFGGATSP 1794

Query: 1762 DYSPSSPQYSPSA-GYSPSAPGY-------SPSS--TSQYTPQTNR 1797
             YSP+SPQYSP++  YSP++P Y       SP+S  + QY+P + R
Sbjct: 1795 AYSPTSPQYSPTSPQYSPTSPQYQASGDRRSPTSPTSPQYSPTSPR 1840


>gi|320038943|gb|EFW20878.1| DNA-directed RNA polymerase II largest subunit [Coccidioides
            posadasii str. Silveira]
          Length = 1750

 Score = 1670 bits (4325), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 909/1777 (51%), Positives = 1192/1777 (67%), Gaps = 154/1777 (8%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTI 60
             +FP+S A +  ++ +QFG+LSP+EI++MSVV +E+ ET +  R +P+  GL+DPRLGTI
Sbjct: 4    VKFPFSKAPLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEARQRPREKGLNDPRLGTI 63

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DR  +C TC   + +CPGHFGH+EL+ P+FHIGF+  +  ++ +VC NC KI A+  D K
Sbjct: 64   DRNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTSDQK 123

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK--KNKGGCGAQQPKL 178
            +  AL+ R+PK R   I    K+   CE     D     G+E  K  K  GGCG  QP++
Sbjct: 124  YLDALRFRDPKRRFDAIWRLSKDVLICEADPPPDDDDPFGKESSKIVKGHGGCGNAQPQI 183

Query: 179  TIEGMKMIAEYKAQRKKN--DDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
              EG+ ++  +K  + ++  DD + Q PE    K+ +T +  L + + +S+ED ++LGL+
Sbjct: 184  RKEGISLVGTWKPNKMRDMMDDTDIQQPE----KKQITPQMALNIFRNVSEEDVRILGLS 239

Query: 236  PKYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WM++ VLP+PPPPV             R  DDLT++LA IIR N+N+ R E+ 
Sbjct: 240  NDYARPEWMVITVLPVPPPPVRPSVLVGGSSGGQRGEDDLTYKLAEIIRANQNVTRCEQE 299

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P H++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I  RLK KEGR+R NLMG
Sbjct: 300  GSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMG 359

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT DP +++D++GVP SIA  LTYPE VTPYNI +L +LV+ GP   PG 
Sbjct: 360  KRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKLGQLVDNGPDVHPG- 418

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
              A+Y+IR  G+R+DLR+ K     + L+ G++VERHL DGD +LFNRQPSLHK S+M H
Sbjct: 419  --ARYVIRSSGERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFNRQPSLHKESMMAH 476

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
            R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L +VP  IVSPQ N 
Sbjct: 477  RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVSPQRNG 536

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
            P+MGIVQDTL G  KI +RD F+ K+  MN+++W  ++DG +PQP ILKPRP WTGKQ+ 
Sbjct: 537  PLMGIVQDTLCGIYKICRRDVFLTKEQVMNMMLWVPEWDGVLPQPAILKPRPRWTGKQMI 596

Query: 582  NLIIPKQINLFRTAAWHADNDKGILTAG-----DTLVRIEKGELLSGTLCKKTLGTSTGS 636
            ++++P  +NL R      D DK  L        DT + +  GEL+ G   KKT+G + G 
Sbjct: 597  SMVLPSGLNLLR-----VDRDKVPLAEKFSPLTDTGLLVHGGELMYGMFSKKTVGATGGG 651

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            +IH I+ E GP+    F    Q +VNYWLL N FSIGIGDTI D  T++ I + +   K 
Sbjct: 652  IIHTIYNEYGPEVCMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDLATIQKIEEAVRIRKE 711

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
             V ++   A + +LEP PG ++ E+FE+KV++ LN ARDEAG+  +KSL + NN   M  
Sbjct: 712  EVDSITLSATENTLEPLPGMSVRETFESKVSRALNNARDEAGTETEKSLKDLNNAVQMAR 771

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
            +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGL
Sbjct: 772  SGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGL 831

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
            TP EFFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGDVIQFLY
Sbjct: 832  TPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQFLY 891

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEEN-WNPNYMLQEYIDDLKTIKELR 934
            GEDG+D  +IE+Q +D ++     F   FR + MD EN  +P   L E   ++    E++
Sbjct: 892  GEDGLDGAFIENQRVDVIRCSDELFRNRFRIDLMDPENSLSPE--LLEQATEITGDMEVQ 949

Query: 935  DVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPME 994
               D E ++L+ DR  L + +A   +    LP+N++R++ +A+ TF++     SD+HP +
Sbjct: 950  RYLDEEWEQLQKDRAFLRS-VAKEDEEMMQLPINVQRILESAKTTFRIREGTISDLHPAD 1008

Query: 995  VVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWV 1054
            V+  V  L +RL VV G+D +S EAQ+NATL F   LRS  A KR++ E+ L + AF+ V
Sbjct: 1009 VIPQVQGLLDRLVVVRGDDVISKEAQENATLLFKAQLRSRLAFKRLVVEYSLNKLAFQHV 1068

Query: 1055 IGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII 1114
            +G IESRF ++   PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+
Sbjct: 1069 LGAIESRFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIL 1128

Query: 1115 NVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEE 1174
            NVA  IKTPS++V+  P     KE AK ++  +E+T LRSVTEATE++YDPD   T+IE 
Sbjct: 1129 NVATHIKTPSMTVYQDPARAMDKESAKQLRSVVEHTNLRSVTEATEIYYDPDIQSTVIEA 1188

Query: 1175 DVEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLT 1232
            D + V+SY+ +P ED+  +  + S WLLRI L+R  ++DK L++  VA KI + +  D+ 
Sbjct: 1189 DRDMVESYFIIP-EDVMDDLSRQSKWLLRIILSRPKLLDKGLTVQDVAMKIKESYPQDIA 1247

Query: 1233 CIFNDDNADKLILRIRIMNDEAPK-GELNDESAEDDVFLKKIESNMLTEMALRGV----- 1286
             IF+D+NAD+ ++RIR + D  PK  E +D+  E DV LKK+E+++L  + LRGV     
Sbjct: 1248 VIFSDNNADEQVIRIRQIQD--PKQDEEDDDDTEYDVTLKKLEAHLLDTLTLRGVAGVER 1305

Query: 1287 ------------------------------------NLLAVMCHEDVDARRTTSNHLIEI 1310
                                                 L  V+    VDA RT SN  +EI
Sbjct: 1306 AFINEKSRVRTLEDGSLYKNSEDPQCKEWVLETSGSALGDVLAIPGVDATRTYSNQFVEI 1365

Query: 1311 IEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG 1370
            +EV GIEA R ALL EL  V++FDGSYVN+RHLA+LCD MT RG LMA+TRHGINR DTG
Sbjct: 1366 LEVFGIEATRTALLRELTQVLAFDGSYVNHRHLALLCDVMTSRGFLMAVTRHGINRADTG 1425

Query: 1371 PMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEML----- 1425
             +MRCSFEETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+  +YL+  ML     
Sbjct: 1426 ALMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQNMLMGVVS 1485

Query: 1426 KNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPY- 1484
             NA  + + +  +GL      A    SG+P  + M    Y+ SP+       D+QFSP  
Sbjct: 1486 NNAGLVTMGNVDKGL-ISDGAATQYDSGSPMQENM----YISSPD------PDSQFSPIG 1534

Query: 1485 -------VGGMAFSPTSSPGYSPSSP----GYSPSSP-GYSPTSPGYSPTSPGYSPTSPG 1532
                    G   + P    G+SP+      GYSP+SP   SPTSPGYSP+S GYSPTSPG
Sbjct: 1535 QTGSETPAGFTEYQPPGFGGFSPAGARSPGGYSPTSPFNTSPTSPGYSPSS-GYSPTSPG 1593

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY----SPTSPSYSPTSPSY------ 1582
             S TSP Y  +SPG+SP SP ++PTSP+YSPTSP Y    SPTSPSYSPTSP +      
Sbjct: 1594 MSITSPRYM-TSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPS 1652

Query: 1583 ---------------SPTSPSYSPTSPSYSPTSPSY----SPTSPAYSPTSPAYSPTSP- 1622
                           SPTSPSYSPTSP+    +  +    SPTSP Y+PTSP +SPTSP 
Sbjct: 1653 YSPTSPSFSPASPAFSPTSPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSPE 1712

Query: 1623 AYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSP 1657
            AYSPTSP++  SPTSP   PTSP YSPTSP+++PTSP
Sbjct: 1713 AYSPTSPNFAGSPTSPG-GPTSPGYSPTSPTFNPTSP 1748



 Score =  155 bits (391), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 118/230 (51%), Positives = 147/230 (63%), Gaps = 35/230 (15%)

Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP-AYSPTSPAYSP 1626
            +SP   + S T   ++   P      P +   SP+ + +   YSPTSP   SPTSP YSP
Sbjct: 1530 FSPIGQTGSETPAGFTEYQP------PGFGGFSPAGARSPGGYSPTSPFNTSPTSPGYSP 1583

Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY----SPTSPSYSP 1682
            +S  YSPTSP  S TSP Y  TSP +SP SP+++PTSPAYSPTSPGY    SPTSPSYSP
Sbjct: 1584 SS-GYSPTSPGMSITSPRYM-TSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTSPSYSP 1641

Query: 1683 TSPTYSPTSPSYNPQSAKY----------SPSLAYSPSSPRLSPA-----SPYSPTSPNY 1727
            TSP +SPTSPSY+P S  +          SPS  YSP+SP L  A     SP SPTSP Y
Sbjct: 1642 TSPGFSPTSPSYSPTSPSFSPASPAFSPTSPS--YSPTSPALGGATGRHLSPTSPTSPKY 1699

Query: 1728 SPTSSSYSPTSP-SYSPSSPTY--SPSSPYNAGGGNPDYSPSSPQYSPSA 1774
            +PTS  +SPTSP +YSP+SP +  SP+SP   G  +P YSP+SP ++P++
Sbjct: 1700 TPTSPGWSPTSPEAYSPTSPNFAGSPTSP--GGPTSPGYSPTSPTFNPTS 1747



 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/234 (45%), Positives = 139/234 (59%), Gaps = 31/234 (13%)

Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP-AYSPTSPSYSP 1633
            +SP   + S T   ++   P      P +   SPA + +   YSPTSP   SPTSP YSP
Sbjct: 1530 FSPIGQTGSETPAGFTEYQP------PGFGGFSPAGARSPGGYSPTSPFNTSPTSPGYSP 1583

Query: 1634 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY----SPTSPTYSP 1689
            +S  YSPTSP  S TSP Y  TSP +SP SP ++PTSP YSPTSP Y    SPTSP+YSP
Sbjct: 1584 SS-GYSPTSPGMSITSPRYM-TSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTSPSYSP 1641

Query: 1690 TSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS-----------SSYSPTS 1738
            TSP ++P S  YSP+      +     +  +SPTSP+YSPTS           S  SPTS
Sbjct: 1642 TSPGFSPTSPSYSPTSPSFSPA-----SPAFSPTSPSYSPTSPALGGATGRHLSPTSPTS 1696

Query: 1739 PSYSPSSPTYSPSSPYNAGGGNPDY--SPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
            P Y+P+SP +SP+SP      +P++  SP+SP    S GYSP++P ++P+S  Q
Sbjct: 1697 PKYTPTSPGWSPTSPEAYSPTSPNFAGSPTSPGGPTSPGYSPTSPTFNPTSPRQ 1750



 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 97/207 (46%), Gaps = 64/207 (30%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP-SYSPTSPTYSP 1689
            +SP   + S T   ++   P      P +   SPA + +  GYSPTSP + SPTSP YSP
Sbjct: 1530 FSPIGQTGSETPAGFTEYQP------PGFGGFSPAGARSPGGYSPTSPFNTSPTSPGYSP 1583

Query: 1690 TSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY-------- 1741
            +S               YSP+SP +S  SP   TSP +SP S +++PTSP+Y        
Sbjct: 1584 SS--------------GYSPTSPGMSITSPRYMTSPGFSPASPTFAPTSPAYSPTSPGYG 1629

Query: 1742 ---SPSSPTYSPSSP--------------------YNAGGGNPDYSPSSPQYSPSAG--- 1775
               SP+SP+YSP+SP                          +P YSP+SP    + G   
Sbjct: 1630 QAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGATGRHL 1689

Query: 1776 ---------YSPSAPGYSPSSTSQYTP 1793
                     Y+P++PG+SP+S   Y+P
Sbjct: 1690 SPTSPTSPKYTPTSPGWSPTSPEAYSP 1716


>gi|361124608|gb|EHK96688.1| putative DNA-directed RNA polymerase II subunit rpb1 [Glarea
            lozoyensis 74030]
          Length = 1727

 Score = 1670 bits (4324), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 905/1750 (51%), Positives = 1176/1750 (67%), Gaps = 134/1750 (7%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            F +S A +  ++ +QFG+LSP+EI+ MSVV I + ET +  R KP+  GL+DPRLG+IDR
Sbjct: 6    FTHSDAPLKTIQEIQFGLLSPEEIKNMSVVHILYPETMDESRMKPRDQGLNDPRLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC TC   M+ECPGHFGH+ELAKP+FH GF+K +  I+  VC NC KIL D  +  +K
Sbjct: 66   QFKCGTCDQQMSECPGHFGHIELAKPVFHPGFIKKIKKILEMVCHNCGKILLDRSNPAYK 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEG 182
             A+ IR+PK R   I   CK K  C+     +    +G+E      GGCG  QP++  + 
Sbjct: 126  AAVSIRDPKRRFDTIWRLCKPKMICDSDVSNEEGNSEGKEQAVSIHGGCGNLQPEVRQQS 185

Query: 183  MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
            + +   +K  + ++ +  Q PE    K+ +T E  L V K IS  + + LGL+  YARP+
Sbjct: 186  LTLTGTWKVPKDEDGETAQ-PE----KRNITPEMALAVFKSISSSEIRDLGLSNDYARPE 240

Query: 243  WMILQVLPIPPPP-------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            WMI+ VLP+PPPP             +R  DDLT +L  IIR N N+R+ ++ G+PAHI+
Sbjct: 241  WMIITVLPVPPPPVRPSVSMDGTGQGMRGEDDLTFKLGDIIRANGNVRQAQQEGSPAHIL 300

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            S+F  LLQ+H+ATY DN++ G P+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSA
Sbjct: 301  SDFEALLQYHVATYMDNDIAGTPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSA 360

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVIT DP +++D++GVP SIA  LTYPETVTPYNI  L +LV  GP+  PG   AKY++
Sbjct: 361  RTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNINHLSKLVRNGPNDHPG---AKYVM 417

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            R DG R+DLR+ K S+  +LE G+KVERH+ DGDF++FNRQPSLHK S+MGHR+++MPYS
Sbjct: 418  RADGTRIDLRHNKNSAGVNLEYGWKVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYS 477

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV+ L MVP  IVSPQ N P+MGIVQD
Sbjct: 478  TFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVMNLCMVPLNIVSPQRNGPLMGIVQD 537

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL G  K+ +RD FI K+  MNIL+W  ++DG +PQP ILKPRP WTGKQ+ ++IIPK +
Sbjct: 538  TLAGVYKMCRRDVFITKEHLMNILLWVPEWDGVIPQPAILKPRPRWTGKQIVSMIIPKIV 597

Query: 590  NLFRTAAWHAD---NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            NL        D    D G+L        + +GEL+ G L KK +G S+G +IH+I+ E G
Sbjct: 598  NLHTANDAREDAPLKDDGLL--------VHEGELMFGLLTKKNVGASSGGIIHIIFNEQG 649

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
            PDAA  F    Q +VNYWLL N FSIGIGDTI D  T+E I   I   K+ V  L  +A 
Sbjct: 650  PDAAMAFFNGCQRVVNYWLLHNGFSIGIGDTIPDKSTIEKIEGAIQVQKDEVAELTAKAT 709

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
               LE  PG  + E+FE+ V++ LNTARD+AG+  + SL +SNN   M  +GSKGS INI
Sbjct: 710  ANELESLPGMNVRETFESLVSKALNTARDKAGTKTEDSLKDSNNAVQMARSGSKGSTINI 769

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM
Sbjct: 770  SQMTALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 829

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
             GREGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D   I
Sbjct: 830  AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGTII 889

Query: 887  ESQTLDSLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            E Q +D + +    F+  FR + MD+ N   +  +     D+    E++ + D E ++L 
Sbjct: 890  EKQRVDHINLSDKAFEDRFRLDVMDDRNPAISSEVLSDAADVSGDIEVQKLLDLEWEQLV 949

Query: 946  ADRYQLA-TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
            ADR  L         D    LP+N+ R+I +A++ FK+D  + SD+ P  V+  V  L +
Sbjct: 950  ADRDMLRDVNFKKKDDEQMQLPLNVIRIIDSAKRLFKIDITKRSDLTPQVVIPLVQGLLD 1009

Query: 1005 RLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
            RL VV G+D LS EAQ NATL     LRS  A KR+    RL R AF+ V+GEIE+RF++
Sbjct: 1010 RLVVVRGKDELSEEAQLNATLLIKAQLRSRLAFKRIACHMRLNRLAFDHVLGEIETRFIK 1069

Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS 1124
            SLV PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+A  IKTPS
Sbjct: 1070 SLVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNIASNIKTPS 1129

Query: 1125 LSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
            + V+ + G +++++ AK ++ A+E+T LRSV +ATE+++DP+   T I +D++ V+S++ 
Sbjct: 1130 MVVY-QEGEDASQDSAKLLRSAVEHTNLRSVMQATEIYHDPEIQSTEIADDLDMVESFFI 1188

Query: 1185 MPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
            +P+E   + +  S WLLR+ L+R+ M+DK L +  VA KI + +  DL  IF+D+NA+K 
Sbjct: 1189 IPEEHHDSLDNQSRWLLRLILDRQKMLDKGLRVEDVAIKIKENYPKDLAVIFSDNNAEKQ 1248

Query: 1244 ILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV----------------- 1286
            ++RIR++  +A  G+ +D+  E+D+ LK++E+++L  + LRGV                 
Sbjct: 1249 VIRIRMI--KAGDGKYDDDDIEEDIMLKRLEAHILDTLTLRGVPGVDRAFLNKETKLITT 1306

Query: 1287 ------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                    +L  V+    VD  RT +NH I+++EV GIEA R A
Sbjct: 1307 PDGGLLASKSDDRCTEWYLDTSGTSLAQVLTVPGVDTTRTYTNHFIQVLEVFGIEAARSA 1366

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            L+ EL  V++FDGSYVN+RHLA+L D MT RG LMAITRHGINR DTG +MRCSFEETV+
Sbjct: 1367 LMRELTQVLAFDGSYVNHRHLALLVDVMTSRGLLMAITRHGINRADTGALMRCSFEETVE 1426

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEF 1442
            ILL+AA   E D  RG++EN+MLGQLAP+GTG+  + L+  ML   I     +    L  
Sbjct: 1427 ILLEAAAIGELDDCRGISENVMLGQLAPMGTGELEVLLDPVMLDTVIS---DNGRMNLVP 1483

Query: 1443 GMTPARSPVSGTPYHDG--MMSPGYL----------FSPNLRLSPVTDAQFSPYVGGMAF 1490
            G+    +  + TPY +G  M   GY+          FSP    +P  +  F+   GG   
Sbjct: 1484 GLQAKGADGAATPYDNGSPMNEAGYMGSSPDYTGGGFSPVQSANPDENRGFATEYGGYG- 1542

Query: 1491 SPTSSPGYSPSSP--GYSPSSPGY--SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG 1546
            S   +P  +P SP  G+SP SP    +PTSPGYSP SPGYSPTSPG   TSP +SPSSP 
Sbjct: 1543 SGIGTP--NPRSPGGGWSPVSPNTFGTPTSPGYSPVSPGYSPTSPGM--TSPGFSPSSPA 1598

Query: 1547 YSPTSPAYSPTSPSY-SPTSPSYSPTSPSYSPTSPSY---SPTSPSYSP----------- 1591
            ++PTSPAYSPTSPS+ SPTSPSYSPTSP+YSPTSP++   SP+SP+YSP           
Sbjct: 1599 FTPTSPAYSPTSPSFVSPTSPSYSPTSPNYSPTSPAFHGQSPSSPNYSPTSPSYSPTSPS 1658

Query: 1592 --------TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP-----AYSPTSPSYSPTSPSY 1638
                    T+   SP S   SPTSP YSPTSP++SPTSP       + TSP YSPTSPSY
Sbjct: 1659 YSPTSPNFTANKTSPGS-GLSPTSPVYSPTSPSFSPTSPAYAAAQANATSPKYSPTSPSY 1717

Query: 1639 SPTSPSYSPT 1648
            SPTSP +SPT
Sbjct: 1718 SPTSPQFSPT 1727



 Score =  131 bits (329), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/227 (40%), Positives = 126/227 (55%), Gaps = 36/227 (15%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS--YSPTSPSY- 1645
            Y  +SP Y  T   +SP   A    +  ++     Y     + +P SP   +SP SP+  
Sbjct: 1508 YMGSSPDY--TGGGFSPVQSANPDENRGFATEYGGYGSGIGTPNPRSPGGGWSPVSPNTF 1565

Query: 1646 -SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSY-NPQSAKYSP 1703
             +PTSP YSP SP YSPTSP    TSPG+SP+SP+++PTSP YSPTSPS+ +P S  YSP
Sbjct: 1566 GTPTSPGYSPVSPGYSPTSPGM--TSPGFSPSSPAFTPTSPAYSPTSPSFVSPTSPSYSP 1623

Query: 1704 -SLAYSPSSPRLSPASPYSPT----------------------SPNYSPTSSSYSPTSPS 1740
             S  YSP+SP     SP SP                       + N +   S  SPTSP 
Sbjct: 1624 TSPNYSPTSPAFHGQSPSSPNYSPTSPSYSPTSPSYSPTSPNFTANKTSPGSGLSPTSPV 1683

Query: 1741 YSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPS 1786
            YSP+SP++SP+SP  A       + +SP+YSP++  YSP++P +SP+
Sbjct: 1684 YSPTSPSFSPTSPAYA---AAQANATSPKYSPTSPSYSPTSPQFSPT 1727



 Score = 97.4 bits (241), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 84/216 (38%), Positives = 107/216 (49%), Gaps = 59/216 (27%)

Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYS 1660
            Y  +SP Y  T   +SP   A    +  ++     Y     + +P SP   +SP SP+  
Sbjct: 1508 YMGSSPDY--TGGGFSPVQSANPDENRGFATEYGGYGSGIGTPNPRSPGGGWSPVSPNTF 1565

Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP- 1719
             T     PTSPGYSP SP YSPTSP    TSP              +SPSSP  +P SP 
Sbjct: 1566 GT-----PTSPGYSPVSPGYSPTSPGM--TSP-------------GFSPSSPAFTPTSPA 1605

Query: 1720 YSPTSPNY-SPTSSSYSPTSPSYSPSSPTY---SPSSP---------------------- 1753
            YSPTSP++ SPTS SYSPTSP+YSP+SP +   SPSSP                      
Sbjct: 1606 YSPTSPSFVSPTSPSYSPTSPNYSPTSPAFHGQSPSSPNYSPTSPSYSPTSPSYSPTSPN 1665

Query: 1754 YNAGGGNPD--YSPSSPQYSPSAGYSPSAPGYSPSS 1787
            + A   +P    SP+SP YSP++      P +SP+S
Sbjct: 1666 FTANKTSPGSGLSPTSPVYSPTS------PSFSPTS 1695


>gi|303317798|ref|XP_003068901.1| DNA-directed RNA polymerase II largest subunit, putative
            [Coccidioides posadasii C735 delta SOWgp]
 gi|240108582|gb|EER26756.1| DNA-directed RNA polymerase II largest subunit, putative
            [Coccidioides posadasii C735 delta SOWgp]
          Length = 1746

 Score = 1667 bits (4318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 907/1775 (51%), Positives = 1190/1775 (67%), Gaps = 154/1775 (8%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTI 60
             +FP+S A +  ++ +QFG+LSP+EI++MSVV +E+ ET +  R +P+  GL+DPRLGTI
Sbjct: 4    VKFPFSKAPLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDEARQRPREKGLNDPRLGTI 63

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DR  +C TC   + +CPGHFGH+EL+ P+FHIGF+  +  ++ +VC NC KI A+  D K
Sbjct: 64   DRNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTSDQK 123

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK--KNKGGCGAQQPKL 178
            +  AL+ R+PK R   I    K+   CE     D     G+E  K  K  GGCG  QP++
Sbjct: 124  YLDALRFRDPKRRFDAIWRLSKDVLICEADPPPDDDDPFGKESSKIVKGHGGCGNAQPQI 183

Query: 179  TIEGMKMIAEYKAQRKKN--DDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
              EG+ ++  +K  + ++  DD + Q PE    K+ +T +  L + + +S+ED ++LGL+
Sbjct: 184  RKEGISLVGTWKPNKMRDMMDDTDIQQPE----KKQITPQMALNIFRNVSEEDVRILGLS 239

Query: 236  PKYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WM++ VLP+PPPPV             R  DDLT++LA IIR N+N+ R E+ 
Sbjct: 240  NDYARPEWMVITVLPVPPPPVRPSVLVGGSSGGQRGEDDLTYKLAEIIRANQNVTRCEQE 299

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P H++ EF  LLQ+H+ATY DN++ GQP+A Q+S RP+K+I  RLK KEGR+R NLMG
Sbjct: 300  GSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMG 359

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT DP +++D++GVP SIA  LTYPE VTPYNI +L +LV+ GP   PG 
Sbjct: 360  KRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKLGQLVDNGPDVHPG- 418

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
              A+Y+IR  G+R+DLR+ K     + L+ G++VERHL DGD +LFNRQPSLHK S+M H
Sbjct: 419  --ARYVIRSSGERIDLRHHKGGGGRNFLQWGWRVERHLMDGDVILFNRQPSLHKESMMAH 476

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
            R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L +VP  IVSPQ N 
Sbjct: 477  RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVSPQRNG 536

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
            P+MGIVQDTL G  KI +RD F+ K+  MN+++W  ++DG +PQP ILKPRP WTGKQ+ 
Sbjct: 537  PLMGIVQDTLCGIYKICRRDVFLTKEQVMNMMLWVPEWDGVLPQPAILKPRPRWTGKQMI 596

Query: 582  NLIIPKQINLFRTAAWHADNDKGILTAG-----DTLVRIEKGELLSGTLCKKTLGTSTGS 636
            ++++P  +NL R      D DK  L        DT + +  GEL+ G   KKT+G + G 
Sbjct: 597  SMVLPSGLNLLR-----VDRDKVPLAEKFSPLTDTGLLVHGGELMYGMFSKKTVGATGGG 651

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            +IH I+ E GP+    F    Q +VNYWLL N FSIGIGDTI D  T++ I + +   K 
Sbjct: 652  IIHTIYNEYGPEVCMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDLATIQKIEEAVRIRKE 711

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
             V ++   A + +LEP PG ++ E+FE+KV++ LN ARDEAG+  +KSL + NN   M  
Sbjct: 712  EVDSITLSATENTLEPLPGMSVRETFESKVSRALNNARDEAGTETEKSLKDLNNAVQMAR 771

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
            +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGL
Sbjct: 772  SGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGL 831

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
            TP EFFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGDVIQFLY
Sbjct: 832  TPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQFLY 891

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEEN-WNPNYMLQEYIDDLKTIKELR 934
            GEDG+D  +IE+Q +D ++     F   FR + MD EN  +P   L E   ++    E++
Sbjct: 892  GEDGLDGAFIENQRVDVIRCSDELFRNRFRIDLMDPENSLSPE--LLEQATEITGDMEVQ 949

Query: 935  DVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPME 994
               D E ++L+ DR  L + +A   +    LP+N++R++ +A+ TF++     SD+HP +
Sbjct: 950  RYLDEEWEQLQKDRAFLRS-VAKEDEEMMQLPINVQRILESAKTTFRIREGTISDLHPAD 1008

Query: 995  VVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWV 1054
            V+  V  L +RL VV G+D +S EAQ+NATL F   LRS  A KR++ E+ L + AF+ V
Sbjct: 1009 VIPQVQGLLDRLVVVRGDDVISKEAQENATLLFKAQLRSRLAFKRLVVEYSLNKLAFQHV 1068

Query: 1055 IGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII 1114
            +G IESRF ++   PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+
Sbjct: 1069 LGAIESRFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIL 1128

Query: 1115 NVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEE 1174
            NVA  IKTPS++V+  P     KE AK ++  +E+T LRSVTEATE++YDPD   T+IE 
Sbjct: 1129 NVATHIKTPSMTVYQDPARAMDKESAKQLRSVVEHTNLRSVTEATEIYYDPDIQSTVIEA 1188

Query: 1175 DVEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLT 1232
            D + V+SY+ +P ED+  +  + S WLLRI L+R  ++DK L++  VA KI + +  D+ 
Sbjct: 1189 DRDMVESYFIIP-EDVMDDLSRQSKWLLRIILSRPKLLDKGLTVQDVAMKIKESYPQDIA 1247

Query: 1233 CIFNDDNADKLILRIRIMNDEAPK-GELNDESAEDDVFLKKIESNMLTEMALRGV----- 1286
             IF+D+NAD+ ++RIR + D  PK  E +D+  E DV LKK+E+++L  + LRGV     
Sbjct: 1248 VIFSDNNADEQVIRIRQIQD--PKQDEEDDDDTEYDVTLKKLEAHLLDTLTLRGVAGVER 1305

Query: 1287 ------------------------------------NLLAVMCHEDVDARRTTSNHLIEI 1310
                                                 L  V+    VDA RT SN  +EI
Sbjct: 1306 AFINEKSRVRTLEDGSLYKNSEDPQCKEWVLETSGSALGDVLAIPGVDATRTYSNQFVEI 1365

Query: 1311 IEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG 1370
            +EV GIEA R ALL EL  V++FDGSYVN+RHLA+LCD MT RG LMA+TRHGINR DTG
Sbjct: 1366 LEVFGIEATRTALLRELTQVLAFDGSYVNHRHLALLCDVMTSRGFLMAVTRHGINRADTG 1425

Query: 1371 PMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEML----- 1425
             +MRCSFEETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+  +YL+  ML     
Sbjct: 1426 ALMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQNMLMGVVS 1485

Query: 1426 KNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPY- 1484
             NA  + + +  +GL      A    SG+P  + M    Y+ SP+       D+QFSP  
Sbjct: 1486 NNAGLVTMGNVDKGL-ISDGAATQYDSGSPMQENM----YISSPD------PDSQFSPIG 1534

Query: 1485 -------VGGMAFSPTSSPGYSPSSP----GYSPSSP-GYSPTSPGYSPTSPGYSPTSPG 1532
                    G   + P    G+SP+      GYSP+SP   SPTSPGYSP+S GYSPTSPG
Sbjct: 1535 QTGSETPAGFTEYQPPGFGGFSPAGARSPGGYSPTSPFNTSPTSPGYSPSS-GYSPTSPG 1593

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY----SPTSPSYSPTSPSY------ 1582
             S TSP Y  +SPG+SP SP ++PTSP+YSPTSP Y    SPTSPSYSPTSP +      
Sbjct: 1594 MSITSPRYM-TSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPS 1652

Query: 1583 ---------------SPTSPSYSPTSPSYSPTSPSY----SPTSPAYSPTSPAYSPTSP- 1622
                           SPTSPSYSPTSP+    +  +    SPTSP Y+PTSP +SPTSP 
Sbjct: 1653 YSPTSPSFSPASPAFSPTSPSYSPTSPALGGATGRHLSPTSPTSPKYTPTSPGWSPTSPE 1712

Query: 1623 AYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPT 1655
            AYSPTSP++  SPTSP   PTSP YSPTSP+++PT
Sbjct: 1713 AYSPTSPNFAGSPTSPG-GPTSPGYSPTSPTFNPT 1746



 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 118/229 (51%), Positives = 146/229 (63%), Gaps = 35/229 (15%)

Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP-AYSPTSPAYSP 1626
            +SP   + S T   ++   P      P +   SP+ + +   YSPTSP   SPTSP YSP
Sbjct: 1530 FSPIGQTGSETPAGFTEYQP------PGFGGFSPAGARSPGGYSPTSPFNTSPTSPGYSP 1583

Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY----SPTSPSYSP 1682
            +S  YSPTSP  S TSP Y  TSP +SP SP+++PTSPAYSPTSPGY    SPTSPSYSP
Sbjct: 1584 SS-GYSPTSPGMSITSPRYM-TSPGFSPASPTFAPTSPAYSPTSPGYGQAQSPTSPSYSP 1641

Query: 1683 TSPTYSPTSPSYNPQSAKY----------SPSLAYSPSSPRLSPA-----SPYSPTSPNY 1727
            TSP +SPTSPSY+P S  +          SPS  YSP+SP L  A     SP SPTSP Y
Sbjct: 1642 TSPGFSPTSPSYSPTSPSFSPASPAFSPTSPS--YSPTSPALGGATGRHLSPTSPTSPKY 1699

Query: 1728 SPTSSSYSPTSP-SYSPSSPTY--SPSSPYNAGGGNPDYSPSSPQYSPS 1773
            +PTS  +SPTSP +YSP+SP +  SP+SP   G  +P YSP+SP ++P+
Sbjct: 1700 TPTSPGWSPTSPEAYSPTSPNFAGSPTSP--GGPTSPGYSPTSPTFNPT 1746



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 97/207 (46%), Gaps = 64/207 (30%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP-SYSPTSPTYSP 1689
            +SP   + S T   ++   P      P +   SPA + +  GYSPTSP + SPTSP YSP
Sbjct: 1530 FSPIGQTGSETPAGFTEYQP------PGFGGFSPAGARSPGGYSPTSPFNTSPTSPGYSP 1583

Query: 1690 TSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY-------- 1741
            +S               YSP+SP +S  SP   TSP +SP S +++PTSP+Y        
Sbjct: 1584 SS--------------GYSPTSPGMSITSPRYMTSPGFSPASPTFAPTSPAYSPTSPGYG 1629

Query: 1742 ---SPSSPTYSPSSP--------------------YNAGGGNPDYSPSSPQYSPSAG--- 1775
               SP+SP+YSP+SP                          +P YSP+SP    + G   
Sbjct: 1630 QAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGATGRHL 1689

Query: 1776 ---------YSPSAPGYSPSSTSQYTP 1793
                     Y+P++PG+SP+S   Y+P
Sbjct: 1690 SPTSPTSPKYTPTSPGWSPTSPEAYSP 1716


>gi|156054160|ref|XP_001593006.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980]
 gi|154703708|gb|EDO03447.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1746

 Score = 1667 bits (4316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 893/1762 (50%), Positives = 1187/1762 (67%), Gaps = 149/1762 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKP--GGLSDPRLGTIDR 62
            F +S A +  ++ +QFG+ SP+EI+ MSV  I + ET +  K KP   GL+DPRLG+IDR
Sbjct: 6    FAHSDAPLRTIQEIQFGLFSPEEIKNMSVAHILYPETMDESKMKPREQGLNDPRLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC TC  NM+ECPGHFGH+ELAKP++H GF+K    ++  VC NC K+  D  +  +K
Sbjct: 66   QFKCATCDQNMSECPGHFGHIELAKPVYHPGFLKKTKKLLEMVCHNCGKVKLDRSNPAYK 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVP--GQDGEEPLKKNKGGCGAQQPKLTI 180
             A+ IR+PK R + I   CK K  C+   +++      D +E  KK+ GGCG  QP++  
Sbjct: 126  AAVSIRDPKRRFEAIWKLCKTKMICDSDVQMNEEEFNADPKEAAKKSHGGCGNIQPEVRQ 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
              + +   +KA   K++D E + +P +R+  +T +  L V + +S  + Q +GLN  YAR
Sbjct: 186  TALALWGTWKA--PKDEDGEAV-QPDKRQ--ITPDMALNVFRSMSTAEIQDVGLNADYAR 240

Query: 241  PDWMILQVLPIPPPP-------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
            P+WMI+ VLP+PPPP             +R  DDLT++L  IIR N N+R+ ++ G+P H
Sbjct: 241  PEWMIITVLPVPPPPVRPSISMDGTGQGMRGEDDLTYKLGDIIRANGNVRQAQQEGSPQH 300

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            I+ +F  LLQ+H+ATY DN++ GQP A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDF
Sbjct: 301  ILQDFETLLQYHVATYMDNDIAGQPPALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 360

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVIT DP +++D++GVP SIA  LTYPETVTP NI++L +LV+ GP   PG   AKY
Sbjct: 361  SARTVITGDPNLSLDEVGVPRSIARILTYPETVTPLNIDKLHQLVKNGPDEHPG---AKY 417

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            +IR DG R+DLR+ K++    LE G+KVERH+ DGDF++FNRQPSLHK S+MGHR+++MP
Sbjct: 418  VIRSDGTRIDLRHHKRAGAISLEYGWKVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMP 477

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            YSTFRLNLSVTSPYNADFDGDEMN+HVPQ++ETRAEV+ L MVP  IVSPQ N P+MGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNLHVPQTYETRAEVMNLCMVPLNIVSPQRNGPLMGIV 537

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL G  KI +RD FI K+  MNIL+W  D+DG +PQP ILKPRP WTGKQ+ +LIIPK
Sbjct: 538  QDTLAGVYKICRRDVFITKEHLMNILLWVPDWDGVIPQPAILKPRPRWTGKQIVSLIIPK 597

Query: 588  QINLFRTAAWHADNDKGILTA--GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
             +N     +++A  DK  L A   D    I++G+L+ G + KK +G S   ++H+++ E 
Sbjct: 598  IVN-----SYNASKDKEHLHAPLNDDGCLIQEGQLMYGLMAKKNVGASGNGIVHIVFNEQ 652

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GPDAA  F    Q ++NYWLL N FSIGIGDTI + +T+E I   I+K K  V  L+++A
Sbjct: 653  GPDAAMAFFNGCQRVINYWLLHNGFSIGIGDTIPNKETIEQIEKAIAKQKAEVTELVEKA 712

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  + E+FE++V++ LN AR+ AG+  +  L + NN   M  +GSKGS IN
Sbjct: 713  TSNELESLPGMNVRETFESQVSKALNEARNTAGTKTEDGLLDINNAVQMARSGSKGSTIN 772

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQM+A VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHA
Sbjct: 773  ISQMSALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHA 832

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D V 
Sbjct: 833  MAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVI 892

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
             E+Q +D + +    F+  F+ E+  E  + + +  E+ ++L    E + + DAE   LE
Sbjct: 893  FENQKMDHINISNKAFNDLFKLEVMSERISTDVL--EHANELYGDLETQQLLDAEFAALE 950

Query: 946  ADRYQLATEIAT----SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
             DR  L   + +      D  + LP+N+ R+I +A++ FK D  + SD+HP +V+  V +
Sbjct: 951  EDRRILRDFVHSRTKEKDDDHFQLPLNIIRIIDSAKRLFKTDDGKRSDLHPRDVIPRVQQ 1010

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L +R+ +V G D LSVEAQ NAT+F     RS  A KR+     L + AFE ++GE+E+R
Sbjct: 1011 LLDRMIIVRGTDELSVEAQYNATIFIKAQFRSRLAYKRIALGMHLNKLAFEHILGELETR 1070

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F ++LV PGEM+G +AAQSIGEPATQMTLNTFH+ G+S+KNVTLGVPRL+EI+N+A  IK
Sbjct: 1071 FTRALVNPGEMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLGVPRLKEILNIAPNIK 1130

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPS+ V+ + G N+ +E AK ++ A+E+TTLRSVT ATE+++DPD   T IE+D++ V+S
Sbjct: 1131 TPSMIVY-QDGPNANQETAKLLRSAVEHTTLRSVTYATEIYHDPDIQSTTIEDDIDMVES 1189

Query: 1182 YYEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
            Y+ +P+E   +P+  S WLLR+ L+R+ M+DK L +  VA KI + +  DL  IF+D+NA
Sbjct: 1190 YFIIPEEHHDSPDNQSRWLLRLILDRQKMLDKGLKVDDVAIKIKENYPKDLAVIFSDNNA 1249

Query: 1241 DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-------------- 1286
            ++ ++RIR++     K   +D+  E+D+ LK++E+++L  + LRGV              
Sbjct: 1250 EQQVIRIRMIKQSDSK--YDDDDIEEDIMLKRLEAHILDTLTLRGVLGIDRAFLNKDVKL 1307

Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                       +L  V+    VD RRT SNH I++  V GIEA 
Sbjct: 1308 FEKPDGRLVASREDKDCEEWYLDTSGTSLKEVLTVPGVDPRRTYSNHFIQVFVVFGIEAA 1367

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R AL+ EL +V++FDGSYVN+RHLA+L D MT RGHLMAITRHGINR DTG +MRCSFEE
Sbjct: 1368 RSALMRELTMVLAFDGSYVNHRHLALLTDIMTSRGHLMAITRHGINRADTGALMRCSFEE 1427

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI-ELQLPSYME 1438
            TV+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  + L+ +ML+  I +      M 
Sbjct: 1428 TVEILLEAAAVGELDDCRGISENVMLGQLAPMGTGEMDVLLDPKMLETVISDNSRMGLMA 1487

Query: 1439 GL--EFGMTPARSPVSG-TPYHDGMMSPGYLFSPNL--RLSPVTDA-------------- 1479
            G+  + G   A +P  G +P ++G    GYL +P+     SP+  A              
Sbjct: 1488 GIPVKGGEGGAATPYDGQSPLNEG----GYLGTPDYGAAFSPIQSAGSETPSGFATEYGG 1543

Query: 1480 ------QFSPYVGGMAFSPTSSPGYSPSSP-GYSPSSPGYSPTSPGYSPTSPGY-SPTSP 1531
                    SPY  G   S +   GYSP+SP   SP+SP +SP+SPGYSPTSP      SP
Sbjct: 1544 SLGFGGGMSPYGAG---SRSPGGGYSPTSPFNASPTSPQFSPSSPGYSPTSPMMGGGASP 1600

Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSY-SPTSPSYSPTSPSYSPTSP---------- 1580
            GYS  SP +SP SP ++PTSPAYSPTSPS+ SPTSPSYSPTSP+YSPTSP          
Sbjct: 1601 GYS-VSPRFSPVSPAFTPTSPAYSPTSPSFVSPTSPSYSPTSPNYSPTSPNIHGSPTSPS 1659

Query: 1581 -------------SYSPTSPSYSPTSPS----YSPTSPSYSPTSPAYSPTSPAY--SPTS 1621
                         +YSPTSP+Y+    S     SPTSP YSPTSP +SP+SP +  + TS
Sbjct: 1660 YSPTSPSYSPTSPNYSPTSPNYAGNKVSPGSGLSPTSPVYSPTSPNWSPSSPQHQGNNTS 1719

Query: 1622 PAYSPTSPSYSPTSPSYSPTSP 1643
            P YSPTSPSYSPTSP++SPTSP
Sbjct: 1720 PKYSPTSPSYSPTSPNFSPTSP 1741



 Score =  117 bits (292), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 99/226 (43%), Positives = 125/226 (55%), Gaps = 40/226 (17%)

Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP-SYSPTSPSYS 1646
            ++SP   + S T   ++             SP           YSPTSP + SPTSP +S
Sbjct: 1522 AFSPIQSAGSETPSGFATEYGGSLGFGGGMSPYGAGSRSPGGGYSPTSPFNASPTSPQFS 1581

Query: 1647 PTSPSYSPTSPSYSP-TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSL 1705
            P+SP YSPTSP      SP YS  SP +SP SP+++PTSP YSPTSPS+           
Sbjct: 1582 PSSPGYSPTSPMMGGGASPGYS-VSPRFSPVSPAFTPTSPAYSPTSPSF----------- 1629

Query: 1706 AYSPSSPRLSPASP-YSPTSPNY---------SPTSSSYSPTSPSYSPSSPTYSPSSPYN 1755
              SP+SP  SP SP YSPTSPN          SPTS SYSPTSP+YSP+SP Y+  +  +
Sbjct: 1630 -VSPTSPSYSPTSPNYSPTSPNIHGSPTSPSYSPTSPSYSPTSPNYSPTSPNYA-GNKVS 1687

Query: 1756 AGGG----NPDYSPSSPQYSPSA----------GYSPSAPGYSPSS 1787
             G G    +P YSP+SP +SPS+           YSP++P YSP+S
Sbjct: 1688 PGSGLSPTSPVYSPTSPNWSPSSPQHQGNNTSPKYSPTSPSYSPTS 1733



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 53/80 (66%), Gaps = 8/80 (10%)

Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP-S 1773
            SP   YSPTSP       + SPTSP +SPSSP YSP+SP   GG +P YS  SP++SP S
Sbjct: 1560 SPGGGYSPTSP------FNASPTSPQFSPSSPGYSPTSPMMGGGASPGYS-VSPRFSPVS 1612

Query: 1774 AGYSPSAPGYSPSSTSQYTP 1793
              ++P++P YSP+S S  +P
Sbjct: 1613 PAFTPTSPAYSPTSPSFVSP 1632


>gi|324120520|dbj|BAJ78651.1| RNA polymerase II largest subunit [Epiophlebia superstes]
          Length = 1922

 Score = 1664 bits (4309), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 874/1655 (52%), Positives = 1117/1655 (67%), Gaps = 147/1655 (8%)

Query: 23   LSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHF 80
            +SPDEIR+MSV +  I   ET E G+PK GGL DPR G +DR  +C+TC  NM ECPGHF
Sbjct: 1    ISPDEIRRMSVTEGGIRFSETMEGGRPKLGGLMDPRQGVMDRHSRCQTCAGNMTECPGHF 60

Query: 81   GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-ALKIR-NPKNRLKKIL 138
            GH++LAKP+FHIGF+   + I+R VCF CSK+L   ++ K K+  +K +  P+ RL  + 
Sbjct: 61   GHIDLAKPVFHIGFITKTIKILRCVCFYCSKLLVSPNNPKIKEIVMKSKGQPRKRLTFVY 120

Query: 139  DACKNKTKCEGGDEIDVPGQDGEEP------LKKNKGGCGAQQPKLTIEGMKMIAEYKAQ 192
            D CK K  CEGGDE+D+     ++P       K   GGCG  QP +   G+ + AE+K  
Sbjct: 121  DLCKGKNICEGGDEMDIQKDGADDPGGGAQNRKAGHGGCGRYQPSIQRTGLDLTAEWK-- 178

Query: 193  RKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIP 252
               N+D +      E+K +L+AERV  + K ISDE+C ++G++PKYARPDWMI+ VLP+P
Sbjct: 179  -HVNEDSQ------EKKISLSAERVWEIFKHISDEECFIMGMDPKYARPDWMIVTVLPVP 231

Query: 253  PP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT 302
            P             R  DDLTH+LA II+ N  L R E+ GA AH++SE  ++LQFH AT
Sbjct: 232  PLPVRPAVVMYGSARNQDDLTHKLADIIKSNNELLRNEQAGAAAHVLSENIKMLQFHAAT 291

Query: 303  YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
              DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSARTVITPDP + ID
Sbjct: 292  LVDNDMPGLPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRID 351

Query: 363  QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK 422
            Q+GVP SIA NLT+PE VTP+NI++++ELV  G    PG   AKYI+RD+G+R+DLR+  
Sbjct: 352  QVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPG---AKYIVRDNGERIDLRFHP 408

Query: 423  KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 482
            K SD HL+ GY+VERH+ DGD V+FNRQP+LHKMS+MGHR+K++P+STFR+NLSVTSPYN
Sbjct: 409  KPSDLHLQCGYRVERHVRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVTSPYN 468

Query: 483  ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 542
            ADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL   RK+TKRD 
Sbjct: 469  ADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMTKRDV 528

Query: 543  FIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN- 601
            F+EK+  MNILM    +DGK+PQP ILKP+PLWTGKQVF+LIIP  +N+ RT + H D+ 
Sbjct: 529  FLEKEQMMNILMHLPIWDGKMPQPAILKPKPLWTGKQVFSLIIPGNVNMIRTHSTHPDDE 588

Query: 602  DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQ 658
            D G    ++ GDT V +E GEL+ G LCKKTLGTS GSL+H+   E+G +   +F G+ Q
Sbjct: 589  DDGPYCWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFYGNIQ 648

Query: 659  WLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTM 718
             +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I++A +  LEP PG T+
Sbjct: 649  TVVNNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQKAHNMELEPTPGNTL 708

Query: 719  MESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNV 778
             ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INISQ+ ACVGQQNV
Sbjct: 709  RQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNV 768

Query: 779  EGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 838
            EGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVK
Sbjct: 769  EGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVK 828

Query: 839  TSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
            T+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+    +E Q L ++K+  
Sbjct: 829  TAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTIKLSN 888

Query: 899  SEFDKAFRFEMDEENWNPNYMLQEYIDDLKTI----KELRDVFDAEVQKLEADRYQLATE 954
              F++ F+F+   E  N   +  E  D L+ +     ++    + E ++L  DR  L  +
Sbjct: 889  KAFERKFKFDPTNER-NLRRVFAE--DVLREVSGGSSDIIGALEREWEQLVRDREAL-RQ 944

Query: 955  IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDP 1014
            I  SGDS   LP NL+R+IWN QK F ++ R P+D+ P+ V++ V  L  +  +V GED 
Sbjct: 945  IFPSGDSKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVIQGVQDLLTKCVIVAGEDA 1004

Query: 1015 LSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIG 1074
            LS +A +NATL F  L+RST  +K V ++ RL+ EAFEW+IGEIE+RF Q+   PGEM+G
Sbjct: 1005 LSKQANQNATLLFQCLVRSTLCTKCVSEDFRLSSEAFEWLIGEIETRFQQAQCQPGEMVG 1064

Query: 1075 CVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVN 1134
             +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL+VFL     
Sbjct: 1065 ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA 1124

Query: 1135 STKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEK 1194
               E+AKNV C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD D  P +
Sbjct: 1125 RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIGEDQEFVNVYYEMPDFD--PTR 1182

Query: 1195 ISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEA 1254
            ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFNDDNA++L+LRIRIMN + 
Sbjct: 1183 ISPWLLRIELDRKRMTDKKLTMEQIAEKINTGFGDDLNCIFNDDNAERLVLRIRIMNSDE 1242

Query: 1255 PK--------GELNDESAEDDVFLKKIESNMLTEMALRGV-------------------- 1286
             K         E   +  EDD+FL+ IE+NML++M L+G+                    
Sbjct: 1243 NKFGGGGGGDEEDTVDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDSKKRIV 1302

Query: 1287 --------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDE 1326
                                +L+ V+   DVD  RT SN + EI  VLGIEAVR+++  E
Sbjct: 1303 VTESGEFKAIAEWLLETDGTSLMRVLSERDVDPVRTFSNDICEIFSVLGIEAVRKSVEKE 1362

Query: 1327 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1386
            +  V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSFEETVD+L+D
Sbjct: 1363 MNTVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLMD 1422

Query: 1387 AAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQL--------PSYME 1438
            AA  AE D +RGV+ENI++GQL  +GTG   L L+ E  +  IE+ +         +   
Sbjct: 1423 AASHAEVDPMRGVSENIIMGQLPRMGTGAFDLLLDAEKCRGGIEIPVMLGAGMMLGTGGM 1482

Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGY 1498
                  TP  SP + TP+   +MS                   SP  G +++SP    G 
Sbjct: 1483 MFANAATPTSSP-NRTPW---VMSS------------------SPDYGNLSWSPGMGSGR 1520

Query: 1499 S-----------PSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
            +             + G SP+  G S    G+SP     S      S   P+ S SS G 
Sbjct: 1521 TPGGPSFSPSGSSDASGLSPAYGGGS----GWSPQMGSPSSPGLSSSLYIPSPSNSSIGI 1576

Query: 1548 SP--------TSPAYSPTSPSYSPTSPSYSPTSPS 1574
                      +SPA++P SPS +P SP+YSPTSP+
Sbjct: 1577 GAGMSPSYSPSSPAFAPASPSLTPPSPTYSPTSPN 1611



 Score = 97.1 bits (240), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 68/133 (51%), Positives = 81/133 (60%), Gaps = 25/133 (18%)

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPT---------SPSYSPTSPS--YSPTSPSY--- 1589
            SP Y+P SP YSPTSP+YSPTSPSY  T         S   + T P+  YSPTSP++   
Sbjct: 1790 SPQYTPVSPQYSPTSPTYSPTSPSYLATQGGGSGERRSKGKAATEPATRYSPTSPNFSPT 1849

Query: 1590 -----------SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1638
                       SP+S  YSPTSP+Y+PTSP YSPTSP YSPT        P YSPTSP+Y
Sbjct: 1850 SPSYSPSSPQYSPSSSKYSPTSPTYTPTSPKYSPTSPTYSPTGGPGQQVVPGYSPTSPTY 1909

Query: 1639 SPTSPSYSPTSPS 1651
            SP+SP+Y  +  S
Sbjct: 1910 SPSSPAYDDSDKS 1922



 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/133 (44%), Positives = 69/133 (51%), Gaps = 39/133 (29%)

Query: 1600 SPSYSPTSPAYSPTSPAYSPTSPAYSPT---------SPSYSPTSPS--YSPTSP----- 1643
            SP Y+P SP YSPTSP YSPTSP+Y  T         S   + T P+  YSPTSP     
Sbjct: 1790 SPQYTPVSPQYSPTSPTYSPTSPSYLATQGGGSGERRSKGKAATEPATRYSPTSPNFSPT 1849

Query: 1644 -----------------------SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1680
                                   +Y+PTSP YSPTSP+YSPT        PGYSPTSP+Y
Sbjct: 1850 SPSYSPSSPQYSPSSSKYSPTSPTYTPTSPKYSPTSPTYSPTGGPGQQVVPGYSPTSPTY 1909

Query: 1681 SPTSPTYSPTSPS 1693
            SP+SP Y  +  S
Sbjct: 1910 SPSSPAYDDSDKS 1922



 Score = 81.3 bits (199), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 68/140 (48%), Positives = 79/140 (56%), Gaps = 27/140 (19%)

Query: 1670 SPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSP 1729
            SP Y+P SP YSPTSPTYSPTSPSY       S     S       PA+ YSPTSPN+SP
Sbjct: 1790 SPQYTPVSPQYSPTSPTYSPTSPSYLATQGGGSGE-RRSKGKAATEPATRYSPTSPNFSP 1848

Query: 1730 TSSSYSPTSP--------------SYSPSSPTYSPSSP-YNAGGG-----NPDYSPSSPQ 1769
            TS SYSP+SP              +Y+P+SP YSP+SP Y+  GG      P YSP+SP 
Sbjct: 1849 TSPSYSPSSPQYSPSSSKYSPTSPTYTPTSPKYSPTSPTYSPTGGPGQQVVPGYSPTSPT 1908

Query: 1770 YSPSAGYSPSAPGYSPSSTS 1789
                  YSPS+P Y  S  S
Sbjct: 1909 ------YSPSSPAYDDSDKS 1922


>gi|320580596|gb|EFW94818.1| RNA polymerase II largest subunit [Ogataea parapolymorpha DL-1]
          Length = 1730

 Score = 1664 bits (4309), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 859/1589 (54%), Positives = 1111/1589 (69%), Gaps = 98/1589 (6%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTI 60
            ++FPYS A +  V+ VQFG+LSP+EIR +SV +IE+ E  +    KP+  GL+DPRLG+I
Sbjct: 2    SKFPYSSAPLRTVQEVQFGLLSPEEIRAISVAKIEYPEIMDPTTNKPRENGLNDPRLGSI 61

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH- 119
            DR  +C+TC+ +M ECPGHFGH+ELAKP+FHIGF+  +  +   VC NC KIL DE  + 
Sbjct: 62   DRNFRCQTCSEDMQECPGHFGHIELAKPVFHIGFVSRIKKVCECVCMNCGKILLDEATNP 121

Query: 120  KFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
            +F  A+KIR+PK R   +   CK K  CE    +D P  DG    +  +GGCGA QP + 
Sbjct: 122  QFAAAIKIRDPKKRFNAVWSLCKTKMVCE----VDQPVDDGSGRTQHLRGGCGASQPTIR 177

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
             +G+K+   +K +   +DD EQ     ER+Q ++A  VL + K IS EDC  LG N  YA
Sbjct: 178  RDGLKLWGSWK-KSNSDDDGEQ----AERRQ-ISAAEVLNIFKHISPEDCHKLGFNEDYA 231

Query: 240  RPDWMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RP+WM++ VLP+PPPPV          R  DDLT++LA I++ N N++R E +G+P H+I
Sbjct: 232  RPEWMLITVLPVPPPPVRPSVAFTDSKRSEDDLTYKLADILKANINVQRFEMDGSPQHVI 291

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            SEF  LLQ+H+ATY DN++ GQP+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSA
Sbjct: 292  SEFEALLQYHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSA 351

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVI+ DP +++DQ+GVP SIA  L+YPE VTPYNI++L ELV  GP+  PG   AKY+I
Sbjct: 352  RTVISGDPNLDLDQVGVPKSIAKVLSYPEIVTPYNIQKLTELVRNGPNEHPG---AKYVI 408

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RD G R+DLRY K++ D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYS
Sbjct: 409  RDSGDRIDLRYNKRAGDIQLQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYS 468

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLSVTSPYNADFDGDEMN+HVPQS+ETRAE+ ++  VP  IVSPQSN+PVMGIVQD
Sbjct: 469  TFRMNLSVTSPYNADFDGDEMNLHVPQSYETRAELEQICAVPLQIVSPQSNKPVMGIVQD 528

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL G RK+T RDTFIE D  MN+  W  ++DG VPQP ILKP+PLW+GKQV ++ IP+ I
Sbjct: 529  TLCGIRKMTLRDTFIEYDQVMNMCFWIPNWDGVVPQPAILKPKPLWSGKQVLSMCIPQGI 588

Query: 590  NLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
             L R        D  +L+  D+ + I  GE++ G + K T+G+S G LIH +  E GP  
Sbjct: 589  FLQRL-------DGSLLSPKDSGMLIVNGEIMFGVVNKATVGSSAGGLIHTVMREKGPKV 641

Query: 650  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
              +  G+ Q +VNYWLL N FSIGIGD IAD++TM+TI +TI+ AK  V+ +I  AQ   
Sbjct: 642  CAQLFGNIQKVVNYWLLHNGFSIGIGDAIADSETMKTITETIAIAKEKVQEVIMDAQKNL 701

Query: 710  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
            LE EPG T+ ESFE KV+++LN ARD AG SA+ SL +SNN+K MVTAGSKGS+INISQM
Sbjct: 702  LEAEPGMTVRESFEQKVSKLLNEARDSAGKSAETSLKDSNNVKQMVTAGSKGSYINISQM 761

Query: 770  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
            +ACVGQQ VEGKRI FGF DR+LPHFTKDDY  ES+GFVENSYLRGLTPQEFFFHAM GR
Sbjct: 762  SACVGQQIVEGKRINFGFADRSLPHFTKDDYSAESKGFVENSYLRGLTPQEFFFHAMAGR 821

Query: 830  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
            EGLIDTAVKT+ETGYIQRRL+KA+EDIMV YDGT RNSLGDVIQF+YGEDG+D   +E Q
Sbjct: 822  EGLIDTAVKTAETGYIQRRLLKALEDIMVHYDGTTRNSLGDVIQFIYGEDGLDGTQVEKQ 881

Query: 890  TLDSLKMKKSEFDKAFRFEMD--EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
            T+D++      F+K +R ++   E +  P+  L EY  ++    EL+   D E ++L AD
Sbjct: 882  TVDTIPGSTEAFEKRYRVDLMSPETSIRPD--LIEYGAEIIGDIELQKYLDEEYEQLLAD 939

Query: 948  RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1007
            R  L T+  T+G+++WPLPVN++R+I NAQ+ F VD  + SD+   ++V  V +L ++ K
Sbjct: 940  REYLRTKCFTTGENNWPLPVNIRRVIQNAQQIFHVDQTKASDLPIKDIVVGVQELSKKFK 999

Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            V+ GE  +  EAQ+NATL F  L+RS  A++RVL+E RL ++AFEWV+G IE +FL+SLV
Sbjct: 1000 VIRGEGEILAEAQENATLLFQCLVRSRLATRRVLEEFRLNKDAFEWVLGTIEQQFLKSLV 1059

Query: 1068 APGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV 1127
             PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK +KTP+L+V
Sbjct: 1060 NPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNVKTPALTV 1119

Query: 1128 FLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1187
            +LK    S  E+AK++Q A+E+TTL++VT +TE++YDPDP  T++E+D++ V++Y+ +PD
Sbjct: 1120 YLKEEYASDIEKAKSIQSAIEHTTLKNVTASTEIYYDPDPRSTVVEDDIDTVEAYFAIPD 1179

Query: 1188 EDIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            E +     K SPWLLR+EL+R  M+DK+L+M+ VA +I   F DDL  I+++DNA+KL++
Sbjct: 1180 EKVEETIHKQSPWLLRLELDRAKMLDKQLTMSQVAGQIMDNFGDDLFVIWSEDNAEKLVI 1239

Query: 1246 RIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR--------------------- 1284
            R RI+ +E       +E   +D  LK +E+ ML  ++LR                     
Sbjct: 1240 RCRIVREEKAL--DEEEEETEDGLLKALEAQMLESISLRGISGISRVFMMKYDKTYIDET 1297

Query: 1285 --------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
                          GVNL  V+  E VD  RT SN  +EI+ VLGIEA R AL  E+  V
Sbjct: 1298 GDFAKKEEWVLETDGVNLADVLAVEGVDTTRTYSNSFVEILFVLGIEAARSALYKEILNV 1357

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            I+FDGSYVNYRHLA+L D MTYRGHL+AI+RHG NRNDTG +MRCSFEETV+IL DA   
Sbjct: 1358 IAFDGSYVNYRHLALLVDLMTYRGHLVAISRHGFNRNDTGALMRCSFEETVEILFDAGAS 1417

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSP 1450
            AE D   GV++N++LGQLAP GTG   +YL++E L       LPS         T   S 
Sbjct: 1418 AELDTCEGVSQNVILGQLAPFGTGSFEVYLDEEKLS-----MLPS-------DATVHASN 1465

Query: 1451 VSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSP 1510
            V  T   DG  +P      NL+     DA+       +AFSP  + G +    G      
Sbjct: 1466 VLQTKAVDGGSTP--YEEDNLK-DDFIDAEMED--DKVAFSPMITSGVNDDRSGGFTEYG 1520

Query: 1511 G---YSPTSP--GYSPTSPGYSPTSPGYS 1534
            G   Y+PTSP  G++PTSP Y  TSP Y+
Sbjct: 1521 GMSSYAPTSPFSGFAPTSPSYGATSPSYA 1549



 Score =  134 bits (336), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/105 (68%), Positives = 78/105 (74%), Gaps = 14/105 (13%)

Query: 1652 YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS 1711
            YSPTSPSYSPTSP YSPTSP YSPTSP YSPTSP YSPTSP Y             SP+S
Sbjct: 1639 YSPTSPSYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQY-------------SPTS 1685

Query: 1712 PRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYN 1755
            P+ SP SP YSPTSP YSPTS  YSPTSP YSP+SP+YSP++  N
Sbjct: 1686 PQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPSYSPNNNRN 1730



 Score =  110 bits (274), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/120 (55%), Positives = 79/120 (65%), Gaps = 29/120 (24%)

Query: 1680 YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
            YSPTSP+YSPTSP Y             SP+SP+      YSPTSP YSPTS  YSPTSP
Sbjct: 1639 YSPTSPSYSPTSPQY-------------SPTSPQ------YSPTSPQYSPTSPQYSPTSP 1679

Query: 1740 SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTPQTNRD 1798
             YSP+SP YSP+SP         YSP+SPQYSP++  YSP++P YSP+S S Y+P  NR+
Sbjct: 1680 QYSPTSPQYSPTSP--------QYSPTSPQYSPTSPQYSPTSPQYSPTSPS-YSPNNNRN 1730


>gi|213404374|ref|XP_002172959.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
            japonicus yFS275]
 gi|212001006|gb|EEB06666.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
            japonicus yFS275]
          Length = 1748

 Score = 1658 bits (4293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 863/1573 (54%), Positives = 1095/1573 (69%), Gaps = 96/1573 (6%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTID 61
            +F  S   + +V  VQFGILSP+EIR MSV +IE  ET +    +P+  GL DPRLGTID
Sbjct: 5    QFTPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDETGLRPRVAGLLDPRLGTID 64

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R+ KC+TC   MAECPGHFGH+ELAKP+FHIGF+  +  I+  VC+NC K+  D  + KF
Sbjct: 65   RQFKCQTCGETMAECPGHFGHIELAKPVFHIGFLTKIKKILECVCWNCGKLKIDPSNPKF 124

Query: 122  KQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK----KNKGGCGAQQPK 177
             +  + R+PKNRL  I + CK K  CE G      G D  +P +       GGCG  QP 
Sbjct: 125  AETQRFRDPKNRLNAIWNICKAKMVCETGVS---AGSDAFDPNRVGGELGHGGCGNAQPT 181

Query: 178  LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
            +  EG+K+   +K    K  D   LPE    K+ L    V  + K IS ED   +GLN +
Sbjct: 182  IRKEGLKLWGSWK----KGKDDSDLPE----KRLLNPLEVHTIFKHISSEDLVYMGLNEQ 233

Query: 238  YARPDWMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
            YARPDWMI+ VLP+PPP V          R  DDLTH+L+ II+ N N+RR E+ GAPAH
Sbjct: 234  YARPDWMIITVLPVPPPSVRPSISVDGSSRGEDDLTHKLSDIIKANANVRRCEQEGAPAH 293

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            I+SE+ QLLQFH+ATY DNE+ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDF
Sbjct: 294  IVSEYEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDF 353

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVIT DP +++D+LGVP +IA  LTYPETVTPYNI +L+ELV  GP   PG   AKY
Sbjct: 354  SARTVITGDPNLSLDELGVPRTIAKTLTYPETVTPYNIYQLQELVRNGPDEHPG---AKY 410

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            IIRD G+R+DLRY K++ D  L  G++VERH+ DGD V+FNRQPSLHKMS+MGHRI++MP
Sbjct: 411  IIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMP 470

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            YSTFRLNLSVTSPYNADFDGDEMNMHVPQS ETRAE+ E+ MVP+ IVSPQSN+PVMGIV
Sbjct: 471  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEIAMVPRQIVSPQSNKPVMGIV 530

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL G RK + RD F+ +DV MNI++W  ++DG VP P ILKP+PLWTGKQ+ +L+IPK
Sbjct: 531  QDTLAGVRKFSLRDNFLSRDVVMNIMLWVPNWDGVVPPPVILKPKPLWTGKQILSLVIPK 590

Query: 588  QINLFR---TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
             INL R      +   NDKG+L        IE G+++ G + KKT+G S G L+H IW+E
Sbjct: 591  GINLTRDDDKQTYINPNDKGML--------IENGDIVYGVVDKKTVGASQGGLVHTIWKE 642

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
             GP+  + F    Q +VN+WLL N FSIGIGDTIAD  TM+ I  T+  A+  V   IK 
Sbjct: 643  KGPEVCKSFFNGIQRVVNFWLLHNGFSIGIGDTIADLATMKDITRTVKDARRQVTECIKD 702

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            AQ   L+PEPG T+ E+FE KV+++LN ARD AG SA+ SL +SNN+K MV +GSKGSFI
Sbjct: 703  AQQNRLKPEPGMTLRETFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVASGSKGSFI 762

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQM+ACVGQQ VEGKRIPFGF  RTLPHF KDD  PESRGF+ENSYLRGLTPQEFFFH
Sbjct: 763  NISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFH 822

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AM GREGLIDTAVKT+ETGYIQRRLVKAMED+MV+YDGTVRN++GD++QF YGEDG+D+ 
Sbjct: 823  AMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIVQFAYGEDGLDAT 882

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
             +E Q  D+L++   +F+K +R ++ E+     +M      D+     ++++ D E  +L
Sbjct: 883  IVEYQVFDALRLSNVDFEKKYRIDLVEDKKICLHMENSIEGDVA----MQELLDEEYSQL 938

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
              DR      I  +G++ WP PVN+ R+I N+ + F +D ++P+D+ P +++  V  L  
Sbjct: 939  LTDRELCRGFIFPNGEARWPQPVNVHRIIQNSVQIFHLDSKKPTDLLPSDIIYGVRNLIS 998

Query: 1005 RLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
            +L V  G+D ++ E Q+NATL F ILLRS  A+KRV+ E+ L + AFEW+IGEIE+RF Q
Sbjct: 999  KLSVFRGDDRITKEIQENATLLFQILLRSKLATKRVVMEYHLNKIAFEWIIGEIEARFQQ 1058

Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS 1124
              V PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTPS
Sbjct: 1059 CQVNPGEMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPS 1118

Query: 1125 LSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
            L+++L P + S  + AKNVQ  +E+TTL++VT ATE+ YDPDP  T+I+ED +FV++++ 
Sbjct: 1119 LTIYLLPEIASNMDLAKNVQTQIEHTTLKTVTSATEIHYDPDPQNTVIDEDRDFVEAFFA 1178

Query: 1185 MPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADK 1242
            +PDE++     K SPWLLR+EL+R  M+DKKLSM+ VA KI + F+ DL  I+++DNA+K
Sbjct: 1179 IPDEEVEENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNAEK 1238

Query: 1243 LILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---------------- 1286
            LI+R RI+ D+  K + +D   E+D+FLK IE +ML  ++LRGV                
Sbjct: 1239 LIIRCRIIRDDDKKADEDDGLIEEDIFLKTIEGHMLESISLRGVPNITRVYMMEHKIVHQ 1298

Query: 1287 -------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                               NL   M  E VD  RT SN  +E+++VLGIEA R ALL EL
Sbjct: 1299 NDDGVFVRDDEWVLETDGINLAESMAVEGVDPSRTYSNSFVEVLQVLGIEATRSALLKEL 1358

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
            R VI FDGSYVNYRHLA+LCD MT RGHLMAITRHGINR +TG +MRCSFEETV+IL+DA
Sbjct: 1359 RNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDA 1418

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI-ELQLPSYMEGLEFGMTP 1446
            A   E D  RGV+ENIMLGQLAP+GTG   ++L+ ++L + +    +P+ +     GM  
Sbjct: 1419 AASGEKDGCRGVSENIMLGQLAPMGTGSFDVFLDQDLLLSEVPSAGMPTLVGT---GMGK 1475

Query: 1447 ARSPV-SGTPYHDG-MMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPG 1504
            A  P  S TPY    +   GY+ SP+       DA FSP +     +     G   S  G
Sbjct: 1476 AILPEGSATPYERSPLADSGYMGSPD-------DAAFSPLIQTSQDTHDDDYGMMASPYG 1528

Query: 1505 YSPSSPGY-SPTS 1516
                SPGY SP S
Sbjct: 1529 ADARSPGYMSPFS 1541


>gi|164657340|ref|XP_001729796.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
 gi|159103690|gb|EDP42582.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
          Length = 1607

 Score = 1658 bits (4293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 864/1590 (54%), Positives = 1083/1590 (68%), Gaps = 130/1590 (8%)

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS--------- 259
            K+ L A  V  +LK+IS +D   LGL+  +A+PDWM+L VLP+PPP VRP          
Sbjct: 6    KRPLPASEVHTILKKISADDVNTLGLSDDFAQPDWMVLTVLPVPPPQVRPGVTEFGSGMG 65

Query: 260  -DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRS 318
             DDLT++LA II+ + NLRR E+ GAPAHI+++FA LLQ+H ATY DN++ G P++ Q S
Sbjct: 66   QDDLTYKLADIIKASSNLRRMEQEGAPAHILNDFADLLQYHTATYMDNDIAGLPQSLQSS 125

Query: 319  GRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPE 378
            GRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT DP + +DQ+GVP SIA NLTYPE
Sbjct: 126  GRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQVGVPKSIARNLTYPE 185

Query: 379  TVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERH 438
             VTPYN   L +LV  GP+  PG   A+Y+IRD G+R+DL+Y  +  D  L+ G+ VERH
Sbjct: 186  RVTPYNRAYLSDLVRNGPNEYPG---ARYVIRDTGERIDLKY-NRRGDIALQAGWIVERH 241

Query: 439  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
            L DGD+VLFNRQPSLHKMS+M HR+K+M YSTFRLNLSVT PYNADFDGDEMN+HVPQS 
Sbjct: 242  LRDGDYVLFNRQPSLHKMSMMAHRVKLMDYSTFRLNLSVTPPYNADFDGDEMNLHVPQSE 301

Query: 499  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
            E RAE+ ++  VP+ IVSPQ+N+PVMGIVQDTL G RK T RD  ++ D   NILMW   
Sbjct: 302  EARAELAQIAWVPRQIVSPQANKPVMGIVQDTLCGVRKFTLRDCLMDYDQVQNILMWLPG 361

Query: 559  FDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKG 618
            +DG VPQP ILKP+P W+GKQ+ +L IPK IN+F   A  A N+       D  V IE G
Sbjct: 362  WDGIVPQPCILKPKPYWSGKQLLSLCIPKGINVFLGDAKAASNN----FVKDDGVHIENG 417

Query: 619  ELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            E++ G + KK +G++ G LIH+I+ E GP   R F    Q +VNYWLL N FSIGIGDT+
Sbjct: 418  EIMYGVINKKVVGSTAGGLIHIIFRERGPVVCRDFFSGVQRVVNYWLLHNGFSIGIGDTV 477

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
             D  T   IN+TI+KAK++V NLI+ A+   L+ +PG T+ ESFE  VN++LN ARD+ G
Sbjct: 478  PDKATTVNINETIAKAKSDVMNLIQAARHDWLKADPGMTLRESFEANVNRILNKARDDVG 537

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
            S A+++L + NN+K MV AGSKGSFINISQM+ACVGQQ+VEGKRIPFGF  R+LPHFTKD
Sbjct: 538  SHAEQNLPDWNNVKQMVIAGSKGSFINISQMSACVGQQSVEGKRIPFGFRHRSLPHFTKD 597

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
            DY PESRGFVENSYLRGLT  EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+ +
Sbjct: 598  DYTPESRGFVENSYLRGLTAHEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVTI 657

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNY 918
             YDGTVRNS  +VI+F YGEDG+D   +E Q L +  +   EF + F+ E+    +    
Sbjct: 658  CYDGTVRNSTNNVIEFAYGEDGIDGAMVERQKLITHGLNDKEFRRRFKVELSRGGFKKG- 716

Query: 919  MLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQK 978
             L+  + D     EL  + + E ++LEADR  L TE+  +      LP+N+ RL+ NAQ+
Sbjct: 717  TLRAGLGDWS--PELEQLLEGEFEQLEADRKTLRTEVFQTDRVDTYLPLNIARLVLNAQQ 774

Query: 979  TFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASK 1038
             F +DPR+PSD+ P E+V+ + ++   L VV G+D +S   Q+NATL F I LRS   SK
Sbjct: 775  IFHIDPRKPSDLSPFEIVDGLKRVLNNLLVVRGDDKISRVMQENATLLFKIHLRSFLCSK 834

Query: 1039 RVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1098
            +V++ H LTREA+EWV+GEIE +F +S+  PGEM G +AAQSIGEPATQMTLNTFHYAGV
Sbjct: 835  QVIEVHHLTREAWEWVLGEIEGQFARSVAQPGEMCGTLAAQSIGEPATQMTLNTFHYAGV 894

Query: 1099 SAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEA 1158
            S+KNVTLGVPRL+EIIN A+ IKTPS++V+L P  +++ E AK +Q AL YTTL++VT A
Sbjct: 895  SSKNVTLGVPRLKEIINCAENIKTPSVTVYLHPKYSASSESAKIIQTALAYTTLQTVTSA 954

Query: 1159 TEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAP--EKISPWLLRIELNREMMVDKKLSM 1216
             EV+YDPDP  T+I ED +FV +++ +PDE++    E+ SPWLLR+ L+R  M+DK L+M
Sbjct: 955  VEVFYDPDPSSTVIPEDRDFVDAFFAIPDEEVEASLERQSPWLLRLVLDRAQMLDKNLTM 1014

Query: 1217 AAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESN 1276
            A VA KI   F  D+  + ++DNA++L+LRIRI++++  K    +   E+DVFLK +   
Sbjct: 1015 AEVASKIGAMFGRDIFVMHSEDNAEELVLRIRIVDNDPDK----EVQGEEDVFLKSLAQQ 1070

Query: 1277 MLTEMALRGV--------------------------------------NLLAVMCHEDVD 1298
            MLT++AL+GV                                      NL  V+  + VD
Sbjct: 1071 MLTDIALKGVPGISKVFIVKQDKITRRFDPETGEWDSLKEYVLETDGTNLKDVLAVDGVD 1130

Query: 1299 ARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMA 1358
              RT SN+ +E+  V GIEA R +LL E+R VI FDGSYVNYRHLA+L D MT +G LMA
Sbjct: 1131 VSRTLSNNCVEVFRVFGIEAARGSLLKEIRNVIEFDGSYVNYRHLALLVDIMTSQGTLMA 1190

Query: 1359 ITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSL 1418
            ITRHGINR + G +MRC+FEETV+IL++AA   + D  +GV +N++LGQ+AP+GTG   L
Sbjct: 1191 ITRHGINRTNQGALMRCTFEETVEILMEAASMGDMDDCKGVGQNVLLGQMAPMGTGSFDL 1250

Query: 1419 YLNDEMLKNAIELQLPSYME------GLEFGMTPARSPVSGTPYHDGM--MSPGYLFSPN 1470
             L+ +MLK+ I  +  SY        G++     AR+P   TPY  G   +   +     
Sbjct: 1251 NLDVDMLKDVIVNRDQSYANLWVSKLGMDSDDLGARTPGGMTPYDSGSPNIDDDFRVQQQ 1310

Query: 1471 LRLSPVTDAQFSPYVGGMAFSPTSSPGYSP---SSPGY--SPSSPGYSPTSPGYSPTSPG 1525
               SP+          G   S   SP  +P    SPGY  +P+SPGY PTSP Y+ TSP 
Sbjct: 1311 ASFSPLVQVGGDEGGYGEYLSAGQSPMRTPLGAQSPGYGFAPTSPGYVPTSPAYNATSPA 1370

Query: 1526 Y---SP-------TSPGYSPTSP--------------------------------TY--- 1540
                SP       TSP YSPTSP                                TY   
Sbjct: 1371 LGAMSPWVGAAGATSPAYSPTSPRIFAGATSPSYSPTSPSYSPSSPVIDASNARSTYTSR 1430

Query: 1541 -SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS------YSPTSPSYSPTSPSYSPTS 1593
             SP+SP YSPTSP YSPTSP+YSPTSP YSPTSP+         + P YSPTSP YSPTS
Sbjct: 1431 MSPASPNYSPTSPVYSPTSPAYSPTSPQYSPTSPAGPRGRRLGASGPKYSPTSPQYSPTS 1490

Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1653
            P YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YS
Sbjct: 1491 PQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYS 1550

Query: 1654 PTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            PTSP YSPTSP YSPTSP YSPTSP YSP+
Sbjct: 1551 PTSPQYSPTSPQYSPTSPQYSPTSPQYSPS 1580



 Score =  148 bits (374), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/264 (42%), Positives = 138/264 (52%), Gaps = 54/264 (20%)

Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP 1633
            S+SP               S   SP        SP Y      ++PTSP Y PTSP+Y+ 
Sbjct: 1312 SFSPLVQVGGDEGGYGEYLSAGQSPMRTPLGAQSPGY-----GFAPTSPGYVPTSPAYNA 1366

Query: 1634 TSPSYSPTSP---SYSPTSPSYSPTSPSYSP----------------------TSPAYSP 1668
            TSP+    SP   +   TSP+YSPTSP                           S A S 
Sbjct: 1367 TSPALGAMSPWVGAAGATSPAYSPTSPRIFAGATSPSYSPTSPSYSPSSPVIDASNARST 1426

Query: 1669 TSPGYSPTSPSYS---PTSPTYSPTSPSYNPQSAKYSPSL--------------AYSPSS 1711
             +   SP SP      PTSP YSPTSP+Y+P S +YSP+                YSP+S
Sbjct: 1427 YTSRMSPASP---NYSPTSPVYSPTSPAYSPTSPQYSPTSPAGPRGRRLGASGPKYSPTS 1483

Query: 1712 PRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY 1770
            P+ SP SP YSPTSP YSPTS  YSPTSP YSP+SP YSP+SP      +P YSP+SPQY
Sbjct: 1484 PQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSPQYSPTSP-QYSPTSPQYSPTSPQY 1542

Query: 1771 SPSA-GYSPSAPGYSPSSTSQYTP 1793
            SP++  YSP++P YSP+S  QY+P
Sbjct: 1543 SPTSPQYSPTSPQYSPTS-PQYSP 1565


>gi|344303415|gb|EGW33664.1| hypothetical protein SPAPADRAFT_134208 [Spathaspora passalidarum NRRL
            Y-27907]
          Length = 1748

 Score = 1658 bits (4293), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 860/1585 (54%), Positives = 1104/1585 (69%), Gaps = 96/1585 (6%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLG 58
            M  +FPYS A +  V+ VQFG+LSP+EIR +SV +IE+ ET ++   KP+ GGL+DPRLG
Sbjct: 1    MSRQFPYSSAPLRSVKEVQFGLLSPEEIRAISVAKIEYPETMDQTTKKPREGGLNDPRLG 60

Query: 59   TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
            +IDR  +C+TC  +MAECPGHFGH++LAKP+FHIGF+  +  +   VC +C K+L DE +
Sbjct: 61   SIDRNFRCQTCGEDMAECPGHFGHIDLAKPVFHIGFIAKIKKVCECVCMHCGKLLLDESN 120

Query: 119  HKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKN------KGGCG 172
                QA+KIR+PK R   +   CK K  CE     DV  +D +   K N      +GGCG
Sbjct: 121  PAMAQAIKIRDPKRRFNAVWSVCKTKMVCE----TDVTEEDMQVDGKPNQQKPTTRGGCG 176

Query: 173  AQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLL 232
              QP +  +G+K+   +K    KN D+ + PE    ++ L+   +L V K I+ EDC  L
Sbjct: 177  HTQPTIRRDGLKLWGTWK--HNKNFDENEQPE----RRLLSPSEILNVFKHINSEDCYKL 230

Query: 233  GLNPKYARPDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERN 282
            G N  YARP+WM++ VLP+PPP            R  DDLT +LA +I+ N N++R E +
Sbjct: 231  GFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGEDDLTFKLADVIKANINVQRLETD 290

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P H+ISEF  LLQFH+ATY DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMG
Sbjct: 291  GSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMG 350

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVI+ DP +++DQ+GVP SIA  L+YPE VTPYNI RL E V  GP+  PG 
Sbjct: 351  KRVDFSARTVISGDPNLDLDQVGVPISIAKTLSYPEIVTPYNIHRLTEYVRNGPNEHPG- 409

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              AKY+IRD G R+DLRY K++ D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR
Sbjct: 410  --AKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMCHR 467

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ ++  VP  I+SPQSN+P
Sbjct: 468  VKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICAVPLQIISPQSNKP 527

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            VMGIVQDTL G RK+T RDT+IE D  MN+  W  ++DG +P P I+KP+PLWTGKQ+ +
Sbjct: 528  VMGIVQDTLCGIRKMTLRDTYIEFDQVMNMCYWIPNWDGVIPPPAIVKPKPLWTGKQLLS 587

Query: 583  LIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            + IPK I+L R      D  + +L+A DT + I  GE++ G + KKT+G + G LIH + 
Sbjct: 588  MAIPKGIHLQRF-----DGGRDLLSAKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVM 642

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E GP    +     Q +VNYWLL N FSIGIGDTIADA TM+ I  TI +AK  V+ +I
Sbjct: 643  REKGPQVCAQLFSSIQKVVNYWLLHNGFSIGIGDTIADASTMKDITTTIQEAKTKVQEII 702

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
              AQ   LEPEPG T+ ESFE+ V++VLN ARD AG SA+ +L + NN+K MVT+GSKGS
Sbjct: 703  LDAQQNRLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGS 762

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
            FINISQM+ACVGQQ VEGKRIPFGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFF
Sbjct: 763  FINISQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFF 822

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAM GREGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D
Sbjct: 823  FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGID 882

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQ 942
               +E Q++D++      FD+ +R ++ +   + +  L E   ++K   +L+ V D E  
Sbjct: 883  GTQVEKQSVDTIPGSDESFDQRYRIDVLDPAKSISESLLESGKEIKGDVKLQRVLDEEYH 942

Query: 943  KLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            +L  DR  L      +GD SWPLPVNL+R+I NAQ+ F     + SD+   E++  V +L
Sbjct: 943  QLLDDRRYLRDVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYKASDLRLDEIILGVRQL 1002

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
              +L VV G+ PLS EAQ NATL F  LLRS  A++RV++E +L R +FEWV+GEIE++F
Sbjct: 1003 CTKLLVVRGDSPLSKEAQANATLLFQCLLRSRLAARRVIEEFKLNRASFEWVVGEIETQF 1062

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             +S+V PGEM+G VAAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKT
Sbjct: 1063 QKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKT 1122

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            P+L+V+L P + +  E+AK VQ A+E+TTL++VT +TE++YDPDP  T+IE+D + V++Y
Sbjct: 1123 PALTVYLDPEIAADIEKAKVVQSAIEHTTLKNVTSSTEIYYDPDPRTTVIEDDYDTVEAY 1182

Query: 1183 YEMPDEDI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
            + +PD+ +  + EK SPWLLR+EL+R  M+DK+L+MA VAEKI+Q F +DL  I++DD A
Sbjct: 1183 FAIPDQKVEESIEKQSPWLLRLELDRAKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTA 1242

Query: 1241 DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR---------------- 1284
            DKLI+R R++ D  PK    D  AE+D  LK+IE++ML  ++LR                
Sbjct: 1243 DKLIIRCRVVRD--PKSLDEDADAEEDQILKRIEAHMLESISLRGIKGITRVFMMQHKVS 1300

Query: 1285 -------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLD 1325
                               GVNL  VM    VD+ RT SN  IEI+ VLGIEA R AL  
Sbjct: 1301 KPDETGEFKQGKEWVLETDGVNLADVMAVPGVDSSRTYSNDFIEILSVLGIEATRTALFK 1360

Query: 1326 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1385
            E+  VI+FDGSYVNYRH+A+L D MT RGHLMAITRHGINR DTG +MRCSFEETV+ILL
Sbjct: 1361 EILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRADTGALMRCSFEETVEILL 1420

Query: 1386 DAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMT 1445
            +AA  AE D  RG++EN+MLGQ+AP+GTG   + ++D+ML+ A      S +   E+   
Sbjct: 1421 EAAASAELDDCRGISENVMLGQMAPLGTGSFDVMVDDKMLQFA-----SSNIATEEYNDE 1475

Query: 1446 PARSPVSGTPYHDGMMS--PGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSP 1503
               +P       D  +    G  FSP +  +PV+D       GG+     +S G  P+SP
Sbjct: 1476 GGATPYREYDMEDDKIQYEEGAGFSP-IHTAPVSDGG----AGGL-----TSYGGQPTSP 1525

Query: 1504 GYSPSSP-GYSPTSPGYSP-TSPGY 1526
              S +SP  Y  TSP Y    SPGY
Sbjct: 1526 --SATSPFTYGATSPSYGGRASPGY 1548


>gi|149235017|ref|XP_001523387.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
            elongisporus NRRL YB-4239]
 gi|146452796|gb|EDK47052.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
            elongisporus NRRL YB-4239]
          Length = 1745

 Score = 1657 bits (4290), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 855/1583 (54%), Positives = 1107/1583 (69%), Gaps = 95/1583 (6%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLG 58
            M  +FP+S A +  ++ VQFG++SP+EIR +SV +I + ET ++   + K GGL+DPRLG
Sbjct: 1    MSRQFPHSSAPLKSIKEVQFGLMSPEEIRAISVAKIVYPETFDQATKRFKEGGLNDPRLG 60

Query: 59   TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
            +IDR  KC+TC  +M+ECPGHFGH+EL +P+FHIGF+  +  ++ S+CF+C K+L DE++
Sbjct: 61   SIDRNYKCQTCGEDMSECPGHFGHIELTRPVFHIGFIAKIKKVLESICFHCGKLLLDEEN 120

Query: 119  HKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKL 178
                QA+KIR+PK R   +   CK+K  CE  +            ++  +GGCG  QP +
Sbjct: 121  PLMAQAIKIRDPKKRFNAVWGLCKSKMICETSE------------IEGKRGGCGHTQPTI 168

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              +G+K+   +K+ +   D+ +      ER+Q LT   +L + K I+ EDC  LG N  Y
Sbjct: 169  RRDGLKLWGTWKSNKNFEDNDQP-----ERRQ-LTPTEILQIFKHITSEDCYRLGFNEDY 222

Query: 239  ARPDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARP+WM++ VLP+PPP            R  DDLT +LA +I+ N N++R E +G+P H+
Sbjct: 223  ARPEWMLITVLPVPPPPVRPSIAFNDTARGEDDLTFKLADVIKANMNVQRLEMDGSPQHV 282

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ISEF  LLQFH+ATY DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFS
Sbjct: 283  ISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFS 342

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVI+ DP +++DQ+GVP SIA  LTYPE VTPYNI +L ELV  GP   PG   AKY+
Sbjct: 343  ARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPSEHPG---AKYV 399

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IRD G R+DLRY K++ D  L+ G++VERHL D D VLFNRQPSLHKMS+M HR+K+MPY
Sbjct: 400  IRDTGDRIDLRYNKRAGDIALQYGWRVERHLMDEDPVLFNRQPSLHKMSMMAHRVKVMPY 459

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSVTSPYNADFDGDEMN+HVPQS ETR+E+ ++  VP  IVSPQSN+PVMGIVQ
Sbjct: 460  STFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQ 519

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL G RK+T RD FIE D  MN+  W  ++DG +P P I+KP+PLW+GKQ+ +L IPK 
Sbjct: 520  DTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAIIKPKPLWSGKQMLSLAIPKG 579

Query: 589  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            I+L R      D  + +L+A DT + I  GE++ G + KKT+G + G LIH +  E GP 
Sbjct: 580  IHLQR-----FDGGRDLLSAKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPT 634

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
               +     Q +VN+WLL N FSIGIGDTIADA TM+ I  TI +AK  V+ +I  AQ  
Sbjct: 635  VCAQLFSSIQKVVNFWLLHNGFSIGIGDTIADAATMKDITKTIQEAKAKVQEIILDAQHN 694

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             LEPEPG T+ ESFE+ V++VLN ARD AG SA+ SL + NN+K MV +GSKGSFINISQ
Sbjct: 695  KLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQ 754

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            M+ACVGQQ VEGKRIPFGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM G
Sbjct: 755  MSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAG 814

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D+  +E 
Sbjct: 815  REGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDATQVEK 874

Query: 889  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
            Q++D++      F++ +R ++ E+N + +  L E  ++++   EL+ + D E  +L  DR
Sbjct: 875  QSVDTIPGSDESFERRYRIDVLEKNASISTNLLESGEEIQGDVELQKILDEEYNQLLEDR 934

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
              L   +  +GD SWPLPVNL+R+I NAQ+ F     +PSD+   E+VE+V  L  +  V
Sbjct: 935  KYLRDVVFPNGDFSWPLPVNLRRIIQNAQQIFHSGRDKPSDLRLDEIVESVRDLCTKFLV 994

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            V G+ PL  EAQ+NATL F  L+RS  AS+RV++E +L + +FEW +GEIE++F +S+V 
Sbjct: 995  VRGDTPLMKEAQENATLLFQCLVRSRLASRRVIEEFKLNKASFEWALGEIETQFQKSVVH 1054

Query: 1069 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1128
            PGEM+G VAAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTP+L+V+
Sbjct: 1055 PGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1114

Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1188
            L P V S  E AK VQ ++E+TTL++VT +TE++YDPDP  T+IEED + V++Y+ +PD+
Sbjct: 1115 LDPEVASDIELAKIVQSSIEHTTLKNVTSSTEIYYDPDPRTTVIEEDYDTVEAYFAIPDQ 1174

Query: 1189 DI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
             +  + EK SPWLLR+EL+R  M+DK+L+MA VAEKI+Q F DDL  I++DD ADKLI+R
Sbjct: 1175 KVEESIEKQSPWLLRLELDRAKMLDKQLTMAQVAEKISQNFGDDLFVIWSDDTADKLIIR 1234

Query: 1247 IRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR---------------------- 1284
             R++ D  PK    D  AE+D  LK+IE++ML  ++LR                      
Sbjct: 1235 CRVVRD--PKSLDEDADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVSKPDATG 1292

Query: 1285 -------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
                         GVNL  VM    VD+ RT SN  IEI+ VLGIEA R AL  E+  VI
Sbjct: 1293 EFKQGKEWVLETDGVNLADVMAVPGVDSARTYSNDFIEILSVLGIEATRSALFKEILNVI 1352

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
            +FDGSYVNYRH+A+L D MT RGHLMAITRHGINR+DTG +MRCSFEETV+ILLDAA  A
Sbjct: 1353 AFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAASA 1412

Query: 1392 ESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPV 1451
            E D  +G++EN+MLGQ+AP+GTG   + ++D+ML+ A     P+        M       
Sbjct: 1413 ELDDCKGISENVMLGQMAPLGTGSFDVMVDDKMLQQA-----PT-----NVAMVEVADDG 1462

Query: 1452 SGTPYHD-GMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSP 1510
              TPY D  M     +       SPV +A      GG+     +S G  P+SPG   +SP
Sbjct: 1463 GATPYRDLEMEDEQIVVDEGAGFSPVHNAMSDNMNGGL-----TSYGGQPTSPG--NTSP 1515

Query: 1511 GYSPTSPGYSPTSPGYSPTSPGY 1533
                T+PGY  TSPGY  TSPGY
Sbjct: 1516 FSYGTTPGYGGTSPGYGGTSPGY 1538



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/28 (67%), Positives = 21/28 (75%)

Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPT 1747
            YSPTSP YSP S +YSP SP Y P SP+
Sbjct: 1715 YSPTSPQYSPRSPNYSPKSPEYKPKSPS 1742



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 34/55 (61%), Gaps = 8/55 (14%)

Query: 1707 YSPSSPR--------LSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
            YSP+SP+           +  YSPTSP YSPTS  YSP SP+YSP SP Y P SP
Sbjct: 1687 YSPTSPQYSPTSPSYSPTSPSYSPTSPQYSPTSPQYSPRSPNYSPKSPEYKPKSP 1741


>gi|330931381|ref|XP_003303389.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
 gi|311320680|gb|EFQ88526.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
          Length = 1738

 Score = 1656 bits (4288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 890/1761 (50%), Positives = 1179/1761 (66%), Gaps = 130/1761 (7%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ +QFG+LSP+EI+ MSVV I + ET   ++ KP+  GL+DP+LGTIDR   C TC  +
Sbjct: 16   IKEIQFGLLSPEEIKAMSVVHIIYPETMDEQKQKPREQGLNDPKLGTIDRMYHCSTCKED 75

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKN 132
            +  CPGHFGH+EL  P+FH+GF+  +  ++ +VC  C  I AD +   +  A K ++ K 
Sbjct: 76   IQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGLIKADFNHPDWIAATKTKDAKK 135

Query: 133  RLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPK-LTIEGMKMIAEYKA 191
            R  KI    + K+ C+     D P    ++  K   GGCG+ QP  +  +G+K+ A +K 
Sbjct: 136  RFDKIWRMSRTKSTCDA----DGPDAGKDKIPKIPHGGCGSAQPDTIRKDGLKLTATWKQ 191

Query: 192  QRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPI 251
            ++K++DD        +RK+ +T ++   + K +++    LLGLN  YARP+WMIL VLP+
Sbjct: 192  KKKEDDDGSG-----DRKEVITPKQAQTIFKLMTENTLALLGLNADYARPEWMILDVLPV 246

Query: 252  PPPP-------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQF 298
            PPPP             +R  DDLT++L  IIR N  +   ++ G+P H+ +EF  L+Q+
Sbjct: 247  PPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANGRVAECQQEGSPQHVTAEFEALVQY 306

Query: 299  HIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPT 358
            H+ATY DN+  G P+A Q+SGRP+K+I  RLK KEGR+RGNLMGKRVDFSARTVIT DP 
Sbjct: 307  HVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDFSARTVITGDPN 366

Query: 359  INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDL 418
            +++DQ+GVP SIA  LTYPE VT +NI +L  LV  GP+  PG   A Y+I+ DG RLDL
Sbjct: 367  LSLDQVGVPRSIARTLTYPEVVTKFNISKLTNLVRNGPNQHPG---ANYVIKADGARLDL 423

Query: 419  RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVT 478
            ++ K   D  L+ G+KVERH+ND D ++FNRQPSLHK S+MGHR+K+MPYSTFRLNLSVT
Sbjct: 424  KHNKNLDDLRLQYGWKVERHINDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVT 483

Query: 479  SPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKIT 538
            SPYNADFDGDEMN+HVPQS ETRAEV  L MVPK IVSPQ N+P+MGIVQDTLLG  K++
Sbjct: 484  SPYNADFDGDEMNLHVPQSDETRAEVQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMS 543

Query: 539  KRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWH 598
            +RD FI  +  M ILMW  D+DG VP+P ILKPRPLWTGKQ+ ++  PK++N+ +     
Sbjct: 544  RRDNFIGIEQVMPILMWVPDWDGIVPEPAILKPRPLWTGKQLVSMAFPKEVNIEKKEDDS 603

Query: 599  ADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQ 658
            + + +  +   D  + I+ G+L+ G + KK +G S G +IH+I+ E+GPDAA KF    Q
Sbjct: 604  SPSPQNDIR--DKSLMIKSGQLIYGQVTKKIVGASAGGVIHIIFNELGPDAAVKFFNACQ 661

Query: 659  WLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTM 718
             + N+WLL + FS G+GDTI D  T E I D + K++  V+ +I+QA    LEP PG T+
Sbjct: 662  RICNWWLLHHGFSFGVGDTIPDPATSEKIADEVRKSREKVEQIIEQATLDELEPMPGMTI 721

Query: 719  MESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNV 778
              +FE+KV + LN AR+  G++AQ SL + NN+   V +GSKGS +NISQM A VGQQ V
Sbjct: 722  RGTFESKVQKFLNEAREGGGTAAQTSLKDFNNVVQTVVSGSKGSTVNISQMVALVGQQAV 781

Query: 779  EGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 838
            EG+RIP+GF  RTLPHF KDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVK
Sbjct: 782  EGQRIPYGFKYRTLPHFAKDDYSPESRGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVK 841

Query: 839  TSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
            T+ETGYIQRRLVKA+ED+MVKYDGTVRNS+GD+++F+YGEDG+D  +IE Q++D++    
Sbjct: 842  TAETGYIQRRLVKALEDVMVKYDGTVRNSMGDIVEFIYGEDGLDGAYIEKQSMDTIMCSD 901

Query: 899  SEFDKAFRFEMDEEN------WNPNY--MLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            ++F+ A++ ++   +      W      M Q  +D       ++   D E ++++ DR  
Sbjct: 902  ADFEAAYKLDVLTTDQPEIPVWKLEGSPMFQGDVD-------VQRALDQEFEEIKNDRAV 954

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP-SDMHPMEVVEAVDKLQERLKVV 1009
            L   +      S+ LP+N++R+I +AQ  F ++P +  S++ P+E ++ V +  +RL V+
Sbjct: 955  LRDTLNEDELDSFQLPLNIQRMIRSAQARFGINPEKAVSNLTPIEAIQQVRETLDRLIVI 1014

Query: 1010 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1069
             G D LS+EAQ +AT  F   LR+  A K++  +HRL +EA ++++GE+E RFL++ VAP
Sbjct: 1015 RGTDELSIEAQNSATQLFKAHLRARLAFKKLAVQHRLNKEALKYILGELEDRFLKAAVAP 1074

Query: 1070 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1129
            GEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA  IKTPS+ V  
Sbjct: 1075 GEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAANIKTPSMLV-R 1133

Query: 1130 KPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDED 1189
            +    + +  AK ++  +E TTLRS+T+A E++YDPD   T +E+D + V+SY+ +P+ED
Sbjct: 1134 QIDKKADQGDAKKLRSTIELTTLRSLTQAVELYYDPDIQSTRVEDDQDMVESYFILPEED 1193

Query: 1190 IAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI 1249
               E  S WLLRI L+R+ ++DK +++  VA KI +EF  +L  IF+D+NAD+ ++R+R 
Sbjct: 1194 EVIESQSKWLLRIILDRKKLLDKSITIGEVAGKIKEEFKPNLAVIFSDENADEQVMRVRF 1253

Query: 1250 MNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV----------------------- 1286
            + D+    +  DE   D+ +++K+E ++L ++ LRGV                       
Sbjct: 1254 IWDQNLTKDDEDEDERDERWMRKLEHHLLDDVTLRGVPGVERAFIREHCVTKKRDDGSLL 1313

Query: 1287 ------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELR 1328
                               L  V+    VDA  T SN  IEI+ VLGIEA R  LL EL 
Sbjct: 1314 HSKSSPECKEWVLDTTGTALAEVLSIPGVDASTTYSNSFIEILAVLGIEAARAGLLKELG 1373

Query: 1329 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1388
            +V+SFDGSYVN+RH+A+L D M  RG LMAITRHGINRNDTG +MRCSFEETV+ILL+AA
Sbjct: 1374 MVLSFDGSYVNHRHMALLVDIMCQRGVLMAITRHGINRNDTGALMRCSFEETVEILLEAA 1433

Query: 1389 VFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPAR 1448
             F E D  RGV+ENIMLGQLAP+GTG+  + +++ ML   +E    S M G   G     
Sbjct: 1434 GFGELDDCRGVSENIMLGQLAPMGTGEFDVVMDNGMLLTMVEDN--SKMMGGAAGAGAYM 1491

Query: 1449 SPVSGTPYHDGMMSPGY-------------LFSP-NLRLSPVTDAQFSPY---VGGMAFS 1491
            S  + TPY  G  SP Y              FSP            F+ Y    G   FS
Sbjct: 1492 SDGAATPYDLG--SPTYEGGMGMGGGYDQVSFSPMAAAGGGDDQGGFTAYGGTYGSGGFS 1549

Query: 1492 PTSSPGYSPSSPGYSPSSPGY-SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY--S 1548
            P    G SP   G++  SPG+ SP SPG+SPTSPGYSPTSPG +  SP ++ +SPGY  S
Sbjct: 1550 PYDG-GRSPGGSGFTGMSPGFTSPVSPGFSPTSPGYSPTSPGTA--SPRFAATSPGYMAS 1606

Query: 1549 PTSPAYSPTSPSY-SPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSY--SPTSPSYS 1604
            PTSP YSPTSP Y SPTSPSYSPTSP+ YSPTSP YSPTSP+YSPTSP++    TSP+YS
Sbjct: 1607 PTSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYS 1666

Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPT 1662
            PTSP YSPTSP YSPTSP Y  TS   SPTSP    TSP YSPTSP YSPTSP  S+SPT
Sbjct: 1667 PTSPQYSPTSPQYSPTSPQYQATSDRRSPTSP----TSPQYSPTSPRYSPTSPAGSFSPT 1722

Query: 1663 SPAYSPTSPGYSPTSPSYSPT 1683
            SP YSPTSPG     P+YSPT
Sbjct: 1723 SPRYSPTSPG-----PAYSPT 1738



 Score =  187 bits (476), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/216 (56%), Positives = 142/216 (65%), Gaps = 30/216 (13%)

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
            S  +SP     SP    ++  SP + SP SP +SPTSP YSPTSP  +  SP ++ TSP 
Sbjct: 1545 SGGFSPYDGGRSPGGSGFTGMSPGFTSPVSPGFSPTSPGYSPTSPGTA--SPRFAATSPG 1602

Query: 1638 Y--SPTSPSYSPTSPSY-SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSY 1694
            Y  SPTSP YSPTSP Y SPTSPSYSPTSPA      GYSPTSP YSPTSP YSPTSP++
Sbjct: 1603 YMASPTSPHYSPTSPRYGSPTSPSYSPTSPA------GYSPTSPQYSPTSPNYSPTSPTF 1656

Query: 1695 NPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTS---SSYSPTSPSYSPSSPTYSP 1750
                   SP  AYSP+SP+ SP SP YSPTSP Y  TS   S  SPTSP YSP+SP YSP
Sbjct: 1657 --MGGATSP--AYSPTSPQYSPTSPQYSPTSPQYQATSDRRSPTSPTSPQYSPTSPRYSP 1712

Query: 1751 SSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPS 1786
            +SP  +      +SP+SP+YSP+   SP  P YSP+
Sbjct: 1713 TSPAGS------FSPTSPRYSPT---SP-GPAYSPT 1738



 Score =  172 bits (437), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/203 (53%), Positives = 132/203 (65%), Gaps = 25/203 (12%)

Query: 1593 SPSYSPTSPSYSPTSPAYSPTSPAY-SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
            S  +SP     SP    ++  SP + SP SP +SPTSP YSPTSP  +  SP ++ TSP 
Sbjct: 1545 SGGFSPYDGGRSPGGSGFTGMSPGFTSPVSPGFSPTSPGYSPTSPGTA--SPRFAATSPG 1602

Query: 1652 Y--SPTSPSYSPTSPAY-SPTSPGYSPTSPS-YSPTSPTYSPTSPSYNPQSAKYSPSLAY 1707
            Y  SPTSP YSPTSP Y SPTSP YSPTSP+ YSPTSP YSPTSP+Y+P S    P+   
Sbjct: 1603 YMASPTSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPTS----PTFMG 1658

Query: 1708 SPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSS 1767
              +SP       YSPTSP YSPTS  YSPTSP Y  +S   SP+SP +     P YSP+S
Sbjct: 1659 GATSP------AYSPTSPQYSPTSPQYSPTSPQYQATSDRRSPTSPTS-----PQYSPTS 1707

Query: 1768 PQYSPSA---GYSPSAPGYSPSS 1787
            P+YSP++    +SP++P YSP+S
Sbjct: 1708 PRYSPTSPAGSFSPTSPRYSPTS 1730



 Score =  128 bits (321), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/160 (51%), Positives = 103/160 (64%), Gaps = 13/160 (8%)

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPGY-SPTSPSYSPTSPTYSPTSP-SYNPQSAKYSPSLA 1706
            S  +SP     SP    ++  SPG+ SP SP +SPTSP YSPTSP + +P+ A  SP   
Sbjct: 1545 SGGFSPYDGGRSPGGSGFTGMSPGFTSPVSPGFSPTSPGYSPTSPGTASPRFAATSPGYM 1604

Query: 1707 YSPSSPRLSPASPY--SPTSPNYSPTS-SSYSPTSPSYSPSSPTYSPSSPYNAGGG-NPD 1762
             SP+SP  SP SP   SPTSP+YSPTS + YSPTSP YSP+SP YSP+SP   GG  +P 
Sbjct: 1605 ASPTSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPA 1664

Query: 1763 YSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTT 1802
            YSP+SPQYSP++      P YSP+S  QY   ++R   T+
Sbjct: 1665 YSPTSPQYSPTS------PQYSPTS-PQYQATSDRRSPTS 1697


>gi|339252982|ref|XP_003371714.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
 gi|316967997|gb|EFV52341.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
          Length = 1816

 Score = 1655 bits (4287), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 925/1863 (49%), Positives = 1207/1863 (64%), Gaps = 226/1863 (12%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMA 74
            V+ +QFGILSP+E R MSV +I + E  E GKPK GGL DPR G IDR+ +C+TC   +A
Sbjct: 14   VKSIQFGILSPEECRAMSVCEILYPEINENGKPKLGGLMDPRQGVIDRRSRCQTCAGTIA 73

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NPKN 132
            +CPGHFGHLEL+KP++H+GF+  VL ++R VCF CS++L +++  K + AL     + + 
Sbjct: 74   DCPGHFGHLELSKPVYHVGFLPKVLKVLRCVCFYCSRLLVNKNSTKVEAALAKTKYSCRK 133

Query: 133  RLKKILDACKNKTKCEG------------GDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            RL  I D CK K  CEG            G+ ++  G+D ++   K   GCG  QP    
Sbjct: 134  RLTTIYDLCKVKRICEGIEKSPEQLAVDRGELVEENGEDSQQ--AKAPTGCGRYQPSYKR 191

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G+++IAE+K   K N++ +      E+K TL+AERVL +LK ISDED   LG +PKY+R
Sbjct: 192  VGLEVIAEWK---KTNEEMQ------EKKMTLSAERVLEILKGISDEDAITLGFHPKYSR 242

Query: 241  PDWMILQVLPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHI 300
            PDWMI+QVLP+PP  VRP+      +         LR+ E+ G+  HI++E  +LLQ+H+
Sbjct: 243  PDWMIIQVLPVPPLSVRPA------VVTFGNARNQLRQNEQTGSATHIVAEDLRLLQYHV 296

Query: 301  ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTIN 360
            AT FDNE+PG P+AT +SGRP+KS+  RLK KEGRIRGNLMGKRVDFS RTVITPDP + 
Sbjct: 297  ATLFDNEIPGLPKATHKSGRPLKSLKQRLKGKEGRIRGNLMGKRVDFSGRTVITPDPNLA 356

Query: 361  IDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRY 420
            +D+LGVP +IA NLT PE VTP+N++ L++LV  G    PG   AKYIIRD+G R+DLRY
Sbjct: 357  LDELGVPKTIAQNLTVPELVTPFNLDILQDLVNRGDSHYPG---AKYIIRDNGARVDLRY 413

Query: 421  LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP 480
              + SD HL++GY VERH+ D D V+FNRQP+LHKMS+MGHR++++P+STFRLNLSVT+P
Sbjct: 414  HPRLSDLHLQIGYTVERHMRDNDIVIFNRQPTLHKMSMMGHRVRVLPWSTFRLNLSVTTP 473

Query: 481  YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
            YNADFDGDEMN+H+PQS E +AE+LEL M+P+ I++PQ+NRPVMGIVQDTL  CRK+TKR
Sbjct: 474  YNADFDGDEMNLHLPQSQEAKAEILELCMIPRMILTPQANRPVMGIVQDTLTACRKLTKR 533

Query: 541  DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD 600
            D FI++    ++LM    ++GK+P PTI+KP+PLWTGKQ+F++IIP  +NL RT + H D
Sbjct: 534  DVFIDRATMFDLLMLLPKWNGKMPIPTIVKPKPLWTGKQLFSMIIPGNVNLIRTHSTHPD 593

Query: 601  N-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGH 656
            + D G    ++ GDT V IE G+LLSG LCKKTLG S GSL+H++  E+G   A  F   
Sbjct: 594  DEDNGPYKWISPGDTKVLIEHGQLLSGILCKKTLGASAGSLMHIVTLELGCYIAASFYSD 653

Query: 657  TQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR 716
             Q +VN WLL    SIGIGDTIAD  T   I DTI +AK +V ++I++A +  LE  PG 
Sbjct: 654  IQVVVNTWLLTEGHSIGIGDTIADQATYLEIKDTIHRAKQDVIDVIERAHNDELEATPGN 713

Query: 717  TMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 776
            T+ ++FEN VN++LN ARD+ G+SAQ+SLSE NN KAMV AGSKGS INISQ+ ACVGQQ
Sbjct: 714  TLRDTFENSVNRILNDARDKTGASAQRSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQ 773

Query: 777  NVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 836
            NVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFH MGGREGLIDTA
Sbjct: 774  NVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHTMGGREGLIDTA 833

Query: 837  VKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKM 896
            VKT+ETGYIQRRL+KAME +MV YDGTVRN+ G ++Q  YGEDG+D   +E Q+L SLK+
Sbjct: 834  VKTAETGYIQRRLIKAMESVMVAYDGTVRNATGQLVQLRYGEDGLDGAMVEFQSLPSLKL 893

Query: 897  KKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIA 956
               +F + +RF++++E       ++  + DL     +    DAE ++L  DR ++  +I 
Sbjct: 894  SDEKFREKYRFDLNDERLLRKIFIESIVVDLLASGGVVAELDAEFEQLSQDR-RVMRDIF 952

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
             +G+    LP NL+R++WNAQ+ F++D R P ++HP+ V+  V  L ERL +V G+DP+S
Sbjct: 953  PTGEDKVVLPCNLRRIVWNAQRIFRIDMREPCELHPLTVIRGVRSLSERLIIVKGDDPIS 1012

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
             +AQ NATL FN +LRST +SKR+ +E +L  EAFEW++GE+E+RF  + V PGEM+G +
Sbjct: 1013 KQAQHNATLLFNCMLRSTLSSKRLAEEFKLNHEAFEWILGEVETRFNLAQVQPGEMVGAL 1072

Query: 1077 AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNST 1136
            +A S+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN                     
Sbjct: 1073 SALSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIIN--------------------- 1111

Query: 1137 KERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE-MPDEDIAPEKI 1195
                 +V C +E TTL+ V   T ++YDPDP+ T+I++D E+V  +YE +P  D+  E+I
Sbjct: 1112 -----DVLCRIEQTTLKKVALNTALYYDPDPLNTVIQDDQEWVSIFYEILPPLDL--EEI 1164

Query: 1196 SPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAP 1255
            SPW+LRIE++++ M DKK++M +VAEKINQ F DDL  I+ DDNA++L+ RIRI      
Sbjct: 1165 SPWVLRIEVDQKRMTDKKMTMQSVAEKINQNFGDDLRVIYTDDNAERLVFRIRIARGRGS 1224

Query: 1256 KGELNDESA---EDDVFLKKIESNMLTEMALRGV-------------------------- 1286
            K  L +E+    EDDVFL+ IESN+LT+M L+G+                          
Sbjct: 1225 K--LEEEAVDRMEDDVFLRIIESNLLTDMTLQGIESISKVYMLLPSSDDKKRFVINADGE 1282

Query: 1287 --------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
                          +LL V+    VDA RT SNH+ EI EVLGIEAVR+A+  E++ VIS
Sbjct: 1283 YQAVSEWILETDGTSLLKVLSDPAVDATRTYSNHICEIFEVLGIEAVRKAVEKEIKHVIS 1342

Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
            FDGSYVNYRHLA+LCD MT +GH                         VDIL++AA  AE
Sbjct: 1343 FDGSYVNYRHLALLCDIMTAKGH-------------------------VDILMEAAAHAE 1377

Query: 1393 SDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVS 1452
             D L GV+E+IMLGQLA +GTG   L L+ +  K A+E+ + S ++G   G   +   ++
Sbjct: 1378 EDLLLGVSESIMLGQLARLGTGSFDLLLDVQACKQAMEVPM-SLVQGA--GAKNSFLSMN 1434

Query: 1453 GTPYHDGMMSPGYLFSPNLRLSPVTDA-QFSPYVGGMAFSPTSSPGYSPSSPGY------ 1505
               +H  M+SP   +      +PV  A  +SP +    FSP      +  SP Y      
Sbjct: 1435 AMTHHS-MLSPTTNWMAGS--TPVYKAVDWSPALPSGVFSPAGGTLENAFSPAYVSGGAS 1491

Query: 1506 -----SPSSPGYSPTSPG--YSPTSPGYSPTSPGYSPTS--------------------- 1537
                 SPS P   P SP    SP SP  SP +   SP +                     
Sbjct: 1492 IWSPASPSIPYNDPVSPAPYISPASP--SPAAQVNSPAAFSPSSPQYSPSSPQYSPSSPA 1549

Query: 1538 -------PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1590
                    TY+PSSP Y+  S +YSP+SP YSP+SP+YS  S SY   SP YSPT+PSY 
Sbjct: 1550 LSVGTGVGTYNPSSPTYNSGSSSYSPSSPKYSPSSPNYS-ASNSYLAGSPEYSPTNPSYQ 1608

Query: 1591 PTSPSYSPTSPSYSP--TSPA------------------------------YSPTSPAYS 1618
             TSP YSP+SP+Y+P   SPA                              YSPT+  YS
Sbjct: 1609 LTSPKYSPSSPNYNPLAMSPAYSPTSPSYSPSSPDYDPTPVGADGSKKPMRYSPTNANYS 1668

Query: 1619 PTSPAYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
            P+SPAYSP SP YSP+  SP YSP SP YSP+SP +S TSP YSP+SP YSP+SP Y+P+
Sbjct: 1669 PSSPAYSPASPKYSPSLGSPKYSPGSPGYSPSSPGFSMTSPQYSPSSPGYSPSSPRYTPS 1728

Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSP 1736
            SP Y P+SPTYSP+SP Y   S  Y        S      +  Y  +SP Y+ +   Y+P
Sbjct: 1729 SPDYVPSSPTYSPSSPRYAAPSPMYG---GVPSSPVYSPSSPNYCLSSPGYAGSGLDYTP 1785

Query: 1737 TSP 1739
              P
Sbjct: 1786 EPP 1788



 Score = 60.8 bits (146), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 106/268 (39%), Gaps = 93/268 (34%)

Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPS--YSPTSPSY-SPTSPSYSPTSPS-YSPTSPSY 1659
            SPT+   + ++P Y      +SP  PS  +SP   +  +  SP+Y     S +SP SPS 
Sbjct: 1443 SPTTNWMAGSTPVYKAVD--WSPALPSGVFSPAGGTLENAFSPAYVSGGASIWSPASPSI 1500

Query: 1660 ---SPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS--PSYNPQSAKYSPSLAYSPSSPRL 1714
                P SPA     P  SP SPS  P +   SP +  PS    S         SP+    
Sbjct: 1501 PYNDPVSPA-----PYISPASPS--PAAQVNSPAAFSPSSPQYSPSSPQYSPSSPALSVG 1553

Query: 1715 SPASPYSPTSPN----------------------------------YSPTSSSYSPTSPS 1740
            +    Y+P+SP                                   YSPT+ SY  TSP 
Sbjct: 1554 TGVGTYNPSSPTYNSGSSSYSPSSPKYSPSSPNYSASNSYLAGSPEYSPTNPSYQLTSPK 1613

Query: 1741 YSPSSPTYSP----------------------SSPYNAGG----------------GNPD 1762
            YSPSSP Y+P                       +P  A G                 +P 
Sbjct: 1614 YSPSSPNYNPLAMSPAYSPTSPSYSPSSPDYDPTPVGADGSKKPMRYSPTNANYSPSSPA 1673

Query: 1763 YSPSSPQYSPSAG---YSPSAPGYSPSS 1787
            YSP+SP+YSPS G   YSP +PGYSPSS
Sbjct: 1674 YSPASPKYSPSLGSPKYSPGSPGYSPSS 1701


>gi|294654840|ref|XP_002770038.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
 gi|199429189|emb|CAR65414.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
          Length = 1749

 Score = 1654 bits (4284), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 847/1571 (53%), Positives = 1096/1571 (69%), Gaps = 79/1571 (5%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLG 58
            M  +FPYS A +  V+ VQFG+LSP+E+R +SV +IE+ ET ++   KP+  GL+DPRLG
Sbjct: 1    MSRQFPYSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETIDQSTKKPREAGLNDPRLG 60

Query: 59   TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
            +IDR  KC+TC  +MAECPGHFGH+EL KP+FHIGF+  +  +   VC +C K+L DE +
Sbjct: 61   SIDRNFKCQTCGEDMAECPGHFGHIELTKPVFHIGFIAKIKKVCECVCMHCGKLLLDETN 120

Query: 119  HKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKL 178
                QA+KIR+PK R   + + CK K  CE  D +        +P + NKGGCG  QP +
Sbjct: 121  LAMSQAIKIRDPKKRFNAVWNLCKAKMICEA-DNVTSENDPNWKPDQPNKGGCGHTQPTV 179

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              +G+K+   +K  + KN D+ + PE    ++ LT   +L V K I+ +DC  LG N  Y
Sbjct: 180  RRDGLKLWGTWK--QNKNFDENEQPE----RRLLTPSEILSVFKHINSQDCYRLGFNEDY 233

Query: 239  ARPDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARP+WM++ VLP+PPP            R  DDLT +LA +++ N N++R E +G+P H+
Sbjct: 234  ARPEWMLITVLPVPPPPVRPSIAFNDTARGEDDLTFKLADVLKANINVQRLEMDGSPQHV 293

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ISEF  LLQFH+ATY DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFS
Sbjct: 294  ISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFS 353

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVI+ DP +++DQ+GVP SIA  L+YPE VTPYNI RL E V  GP+  PG   AKY+
Sbjct: 354  ARTVISGDPNLDLDQVGVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEHPG---AKYV 410

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IRD G R+DLRY K++ D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPY
Sbjct: 411  IRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPY 470

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ ++  VP  IVSPQSN+PVMGIVQ
Sbjct: 471  STFRLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICAVPLQIVSPQSNKPVMGIVQ 530

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL G RK+T RD FIE D  MN+L W  ++DG +P P I+ P+PLWTGKQ+ ++ IPK 
Sbjct: 531  DTLCGVRKMTLRDNFIEYDQVMNMLYWIPNWDGVIPPPAIVSPKPLWTGKQLLSMAIPKG 590

Query: 589  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            I+L R      D+ K +L+  D  + +  GE++ G + KKT+G + G LIH +  E G  
Sbjct: 591  IHLQRF-----DDGKNLLSPKDNGMLVVDGEIMFGVVDKKTVGATGGGLIHTVMREKGSQ 645

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
               +     Q +VN+WLL N FSIGIGDTIAD+ TM  +  TI  AK+ V+ +I  AQ  
Sbjct: 646  VCAQLFSSIQKVVNFWLLHNGFSIGIGDTIADSSTMRDVTTTIQDAKDKVQEIILDAQSN 705

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             LEPEPG T+ ESFE+ V++VLN ARD AG SA+ +L + NN+K MV +GSKGSFINISQ
Sbjct: 706  KLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQ 765

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            M+ACVGQQ VEGKRIPFGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM G
Sbjct: 766  MSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAG 825

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDG+ RNSLGD+IQF+YGEDG+D   +E 
Sbjct: 826  REGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGSTRNSLGDIIQFVYGEDGIDGTQVEK 885

Query: 889  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
            Q++D++      F+K +R ++ + + +    L E   ++K   +L+ V D E ++LEADR
Sbjct: 886  QSVDTIPGSDESFEKRYRIDVLDPSKSIRESLLESGKEIKGDVKLQKVLDEEYRQLEADR 945

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
              L      +GD +WPLPVNL+R+I NAQ+ F     + SD+   EVV  V  L  +L V
Sbjct: 946  RYLRDVCFPNGDFNWPLPVNLRRIIQNAQQIFHNGRHKASDLRLDEVVRGVQDLCTKLLV 1005

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            + G+  L+ EAQ+NATL F  LLRS  A++RV++E +L+R +FEWV+GEIE++F +S+V 
Sbjct: 1006 IRGKTALTKEAQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIVH 1065

Query: 1069 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1128
            PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTP+L+V+
Sbjct: 1066 PGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1125

Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1188
            L+    +  E+AK VQ A+E+TTL++VT ATE++YDPDP  T+IEED + V++Y+ +PDE
Sbjct: 1126 LEKESAADIEKAKIVQSAIEHTTLKNVTSATEIFYDPDPRSTVIEEDYDTVEAYFAIPDE 1185

Query: 1189 DI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
             +  + EK SPWLLR+EL+R  M+DK+L+M+ VAEKI+Q F +DL  I++DD ADKLI+R
Sbjct: 1186 KVEESIEKQSPWLLRLELDRAKMLDKQLTMSQVAEKISQNFGEDLFVIWSDDTADKLIIR 1245

Query: 1247 IRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR---------------------- 1284
             R++ D  PK    D  AE+D  LK+IES+ML  ++LR                      
Sbjct: 1246 CRVVRD--PKSLDEDADAEEDQILKRIESHMLESISLRGIPGITRVFMMQHKVNSPDITG 1303

Query: 1285 -------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
                         GVNL  VM    VD+ RT SN+ IE++ VLGIEA R AL  E+  VI
Sbjct: 1304 EFKQSQEWVLETDGVNLADVMAVSGVDSSRTYSNNFIEVLSVLGIEATRTALFKEILNVI 1363

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
            +FDGSYVNYRH+A+L D MT RGHLMAITRHGINR DTG +MRCSFEETV+ILL+A   A
Sbjct: 1364 AFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRADTGALMRCSFEETVEILLEAGSAA 1423

Query: 1392 ESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPV 1451
            E D  RG++EN+MLGQ+AP+GTG   + ++D+ML+ A      +   G E G        
Sbjct: 1424 ELDDCRGISENVMLGQMAPLGTGAFDVMVDDKMLQTAPSNIAVTTAAGNETGEYADDG-- 1481

Query: 1452 SGTPYHDGMMS-------PGYLFSPNLRLSPVTDAQ--FSPYVGGMAFSPTSSPGYSPSS 1502
              TPY D  M         G  FSP +  +PV+D     + Y G  + SPTS   Y  +S
Sbjct: 1482 GATPYRDYEMQDDKIQFEEGAGFSP-IHTAPVSDGSGALTSYGGATSPSPTSPFSYGATS 1540

Query: 1503 PGYSP-SSPGY 1512
            P +   +SPGY
Sbjct: 1541 PSFGGVTSPGY 1551


>gi|189197231|ref|XP_001934953.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
 gi|187980901|gb|EDU47527.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
            tritici-repentis Pt-1C-BFP]
          Length = 1742

 Score = 1654 bits (4283), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 890/1765 (50%), Positives = 1177/1765 (66%), Gaps = 148/1765 (8%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ +QFG+LSP+EI+ MSVV I + ET   ++ KP+  GL+DP+LGTIDR   C TC  +
Sbjct: 16   IKEIQFGLLSPEEIKAMSVVHIIYPETMDEQKQKPREQGLNDPKLGTIDRMYHCSTCKED 75

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKN 132
            +  CPGHFGH+EL  P+FH+GF+  +  ++ +VC  C  I AD +   +  A K ++ K 
Sbjct: 76   IQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGLIKADFNHPDWIAATKTKDAKK 135

Query: 133  RLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPK-LTIEGMKMIAEYKA 191
            R  KI    + K+ C+     D P    ++  K   GGCG+ QP  +  +G+K+ A +K 
Sbjct: 136  RFDKIWRMSRTKSTCDA----DGPDSGKDKIPKIPHGGCGSAQPDTIRKDGLKLTATWKQ 191

Query: 192  QRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPI 251
            ++K++DD        +RK+ +T ++   + K +++    LLGLN  YARP+WMIL VLP+
Sbjct: 192  KKKEDDDGSG-----DRKEVITPKQAQTIFKLMTENTLALLGLNADYARPEWMILDVLPV 246

Query: 252  PPPP-------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQF 298
            PPPP             +R  DDLT++L  IIR N  +   ++ G+P H+ +EF  L+Q+
Sbjct: 247  PPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANGRVAECQQEGSPQHVTAEFEALVQY 306

Query: 299  HIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPT 358
            H+ATY DN+  G P+A Q+SGRP+K+I  RLK KEGR+RGNLMGKRVDFSARTVIT DP 
Sbjct: 307  HVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDFSARTVITGDPN 366

Query: 359  INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDL 418
            +++DQ+GVP SIA  LTYPE VT +NI +L  LV  GP+  PG   A Y+I+ DG RLDL
Sbjct: 367  LSLDQVGVPRSIARTLTYPEVVTKFNISKLTNLVRNGPNQHPG---ANYVIKADGARLDL 423

Query: 419  RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVT 478
            ++ K   D  L+ G+KVERH+ND D ++FNRQPSLHK S+MGHR+K+MPYSTFRLNLSVT
Sbjct: 424  KHNKNLDDLRLQYGWKVERHINDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSVT 483

Query: 479  SPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKIT 538
            SPYNADFDGDEMN+HVPQS ETRAEV  L MVPK IVSPQ N+P+MGIVQDTLLG  K++
Sbjct: 484  SPYNADFDGDEMNLHVPQSDETRAEVQNLCMVPKQIVSPQKNQPLMGIVQDTLLGVYKMS 543

Query: 539  KRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWH 598
            +RD FI  +  M ILMW  D+DG VP+P ILKPRPLWTGKQ+ ++  PK++N+ +     
Sbjct: 544  RRDNFIGIEQVMPILMWVPDWDGIVPEPAILKPRPLWTGKQLVSMAFPKEVNIEKKEDDS 603

Query: 599  ADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQ 658
            + + +  +   D  + I+ G+L+ G + KK +G S G +IH+I+ E+GPDAA KF    Q
Sbjct: 604  SPSPQNDIR--DKSLMIKSGQLIYGQVTKKIVGASAGGVIHIIFNELGPDAAVKFFNACQ 661

Query: 659  WLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTM 718
             + N+WLL + FS G+GDTI D  T E I D + K++  V+ +I+QA    LEP PG T+
Sbjct: 662  RICNWWLLHHGFSFGVGDTIPDPATSEKIADEVRKSREKVEQIIEQATLDELEPMPGMTI 721

Query: 719  MESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNV 778
              +FE+KV + LN AR+  G++AQ SL + NN+   V +GSKGS +NISQM A VGQQ V
Sbjct: 722  RGTFESKVQKFLNEAREGGGTAAQTSLKDFNNVVQTVVSGSKGSTVNISQMVALVGQQAV 781

Query: 779  EGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 838
            EG+RIP+GF  RTLPHF KDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVK
Sbjct: 782  EGQRIPYGFKYRTLPHFAKDDYSPESRGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVK 841

Query: 839  TSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
            T+ETGYIQRRLVKA+ED+MVKYDGTVRNS+GD+++F+YGEDG+D  +IE Q++D++    
Sbjct: 842  TAETGYIQRRLVKALEDVMVKYDGTVRNSMGDIVEFIYGEDGLDGAYIEKQSMDTIMCSD 901

Query: 899  SEFDKAFRFEMDEEN------WNPNY--MLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            ++F+ A++ ++   +      W      M Q  +D       ++   D E ++++ DR  
Sbjct: 902  ADFEAAYKLDVLTTDQPEIPVWKLEGSPMFQGDVD-------VQRALDEEFEQIKNDRAV 954

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP-SDMHPMEVVEAVDKLQERLKVV 1009
            L   +      S+ LP+N++R+I +AQ  F ++P +  S++ P+E ++ V +  +RL V+
Sbjct: 955  LRDTLNEEELDSFQLPLNIQRMIRSAQARFGINPEKAVSNLTPIEAIQQVRETLDRLIVI 1014

Query: 1010 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1069
             G D LS+EAQ +AT  F   LR+  A K++  +HRL +EA ++++GE+E RFL++ VAP
Sbjct: 1015 RGTDELSIEAQNSATQLFKAHLRARLAFKKLAVQHRLNKEALKYILGELEDRFLKAAVAP 1074

Query: 1070 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1129
            GEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA  IKTPS+   L
Sbjct: 1075 GEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAANIKTPSM---L 1131

Query: 1130 KPGVNSTKER--AKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1187
               +N   ++  AK ++  +E TTLRS+T+A E++YDPD   T +E+D + V+SY+ +P+
Sbjct: 1132 VRQINKKADQGDAKKLRSTIELTTLRSLTQAVELYYDPDIQSTRVEDDQDMVESYFILPE 1191

Query: 1188 EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1247
            ED   E  S WLLRI L+R+ ++DK +++  VA KI +EF  +L  IF+D+NAD+ ++R+
Sbjct: 1192 EDEVIESQSKWLLRIILDRKKLLDKSITIGEVAGKIKEEFKPNLAVIFSDENADEQVMRV 1251

Query: 1248 RIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------------- 1286
            R + D+    +  DE   D+ +++K+E ++L ++ LRGV                     
Sbjct: 1252 RFIWDQNLTKDDEDEDERDERWMRKLEQHLLDDVTLRGVPGVERAFIREHCVTKKRDDGS 1311

Query: 1287 --------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDE 1326
                                 L  V+    VDA  T SN  IEI+ VLGIEA R  LL E
Sbjct: 1312 LLHSKSSPECKEWVLDTTGTALAEVLSIPGVDATTTYSNSFIEILAVLGIEAARAGLLKE 1371

Query: 1327 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1386
            L +V+SFDGSYVN+RH+A+L D M  RG LMAITRHGINRNDTG +MRCSFEETV+ILL+
Sbjct: 1372 LGMVLSFDGSYVNHRHMALLVDIMCQRGVLMAITRHGINRNDTGALMRCSFEETVEILLE 1431

Query: 1387 AAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTP 1446
            AA F E D  RGV+ENIMLGQLAP+GTG+  + +++ ML   +E    S M G   G   
Sbjct: 1432 AAGFGELDDCRGVSENIMLGQLAPMGTGEFDVVMDNGMLLTMVEDN--SKMMGGAAGAGT 1489

Query: 1447 ARSPVSGTPYHDGMMSPGY-------------LFSP-------------NLRLSPVTDAQ 1480
              S  + TPY  G  SP Y              FSP                        
Sbjct: 1490 YLSDGAATPYDLG--SPTYEGGMGMGGGYDQVSFSPMAAAGGGDDQGGFTAYGGSYGSGG 1547

Query: 1481 FSPYVGGMAFSPTSSPGYSPSSPGY-SPSSPGYSPTSPGYSPTSPG-----YSPTSPGY- 1533
            FSPY GG   SP  S G++  SPG+ SP SPG+SPTSPGYSPTSPG     ++ TSPGY 
Sbjct: 1548 FSPYDGGR--SPGGS-GFTGMSPGFTSPVSPGFSPTSPGYSPTSPGTASPRFAATSPGYM 1604

Query: 1534 -SPTSPTYSPSSPGY-SPTSPAYSPTSPS-YSPTSPSYSPTSPSYSPTSPSY--SPTSPS 1588
             SPTSP YSP+SP Y SPTSP+YSPTSP+ YSPTSP YSPTSP+YSPTSP++    TSP+
Sbjct: 1605 ASPTSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPA 1664

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP--SYS 1646
            YSPTSP YSPTSP YSPTSP Y  TS   SPT    SPTSP YSPTSP YSPTSP  S+S
Sbjct: 1665 YSPTSPQYSPTSPQYSPTSPQYQATSDRRSPT----SPTSPQYSPTSPRYSPTSPAGSFS 1720

Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSP 1671
            PTSP YSPTSP      PAYSPTSP
Sbjct: 1721 PTSPRYSPTSP-----GPAYSPTSP 1740



 Score =  189 bits (481), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/217 (56%), Positives = 143/217 (65%), Gaps = 30/217 (13%)

Query: 1582 YSPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY-- 1638
            +SP     SP    ++  SP + SP SP +SPTSP YSPTSP  +  SP ++ TSP Y  
Sbjct: 1548 FSPYDGGRSPGGSGFTGMSPGFTSPVSPGFSPTSPGYSPTSPGTA--SPRFAATSPGYMA 1605

Query: 1639 SPTSPSYSPTSPSY-SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
            SPTSP YSPTSP Y SPTSPSYSPTSPA      GYSPTSP YSPTSP YSPTSP++   
Sbjct: 1606 SPTSPHYSPTSPRYGSPTSPSYSPTSPA------GYSPTSPQYSPTSPNYSPTSPTF--M 1657

Query: 1698 SAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTS---SSYSPTSPSYSPSSPTYSPSSP 1753
                SP  AYSP+SP+ SP SP YSPTSP Y  TS   S  SPTSP YSP+SP YSP+SP
Sbjct: 1658 GGATSP--AYSPTSPQYSPTSPQYSPTSPQYQATSDRRSPTSPTSPQYSPTSPRYSPTSP 1715

Query: 1754 YNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
              +      +SP+SP+YSP+   SP  P YSP+S  Q
Sbjct: 1716 AGS------FSPTSPRYSPT---SP-GPAYSPTSPKQ 1742



 Score =  127 bits (320), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/157 (51%), Positives = 102/157 (64%), Gaps = 13/157 (8%)

Query: 1652 YSPTSPSYSPTSPAYSPTSPGY-SPTSPSYSPTSPTYSPTSP-SYNPQSAKYSPSLAYSP 1709
            +SP     SP    ++  SPG+ SP SP +SPTSP YSPTSP + +P+ A  SP    SP
Sbjct: 1548 FSPYDGGRSPGGSGFTGMSPGFTSPVSPGFSPTSPGYSPTSPGTASPRFAATSPGYMASP 1607

Query: 1710 SSPRLSPASPY--SPTSPNYSPTS-SSYSPTSPSYSPSSPTYSPSSPYNAGGG-NPDYSP 1765
            +SP  SP SP   SPTSP+YSPTS + YSPTSP YSP+SP YSP+SP   GG  +P YSP
Sbjct: 1608 TSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAYSP 1667

Query: 1766 SSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTT 1802
            +SPQYSP++      P YSP+S  QY   ++R   T+
Sbjct: 1668 TSPQYSPTS------PQYSPTS-PQYQATSDRRSPTS 1697


>gi|154297219|ref|XP_001549037.1| hypothetical protein BC1G_12445 [Botryotinia fuckeliana B05.10]
 gi|347440865|emb|CCD33786.1| similar to DNA-directed RNA polymerase ii largest subunit
            [Botryotinia fuckeliana]
          Length = 1742

 Score = 1651 bits (4275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 881/1761 (50%), Positives = 1171/1761 (66%), Gaps = 158/1761 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKP--GGLSDPRLGTIDR 62
            F +S A +  ++ +QFG+ SP+EI+ MSV  I + ET +  K KP   GL+DPRLG+IDR
Sbjct: 6    FAHSDAPLRTIQEIQFGLFSPEEIKNMSVCHILYPETMDESKMKPREQGLNDPRLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC TC  NM+ECPGHFGH+ELAKP++H GF+K    ++  VC NC K+  D  +  +K
Sbjct: 66   QFKCATCDQNMSECPGHFGHIELAKPVYHPGFLKKTKKLLEMVCHNCGKVKLDRSNPAYK 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE--EPLKKNKGGCGAQQPKLTI 180
             A+ IR+PK R + I   CK K  CE   +++    +G+  E  KK+ GGCG  QP++  
Sbjct: 126  AAVSIRDPKRRFEAIWKLCKVKMVCESDVQMNEEEFNGDPKEAAKKSHGGCGNIQPEVRQ 185

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
              + +   +KA   K++D E + +P +R+  +T E  L V + ++  + Q +GLN  YAR
Sbjct: 186  TALALWGTWKA--PKDEDGEAV-QPDKRQ--ITPEMALNVFRSMTTAEIQDVGLNADYAR 240

Query: 241  PDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
            P+WM++ V             +      +R  DDLT++L  IIR N N+R+ ++ G+P H
Sbjct: 241  PEWMVITVLPVPPPPVRPSISMDGTGQGMRGEDDLTYKLGDIIRANGNVRQAQQEGSPQH 300

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            I+ +F  LLQ+H+ATY DN++ GQP A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDF
Sbjct: 301  ILQDFETLLQYHVATYMDNDIAGQPPALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 360

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVIT DP +++D++GVP SIA  LTYPETVTP NI++L +LV+ GP   PG   AKY
Sbjct: 361  SARTVITGDPNLSLDEVGVPRSIARILTYPETVTPLNIDKLHQLVKNGPDEHPG---AKY 417

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            +IR DG R+DLR+ K++    LE G+KVERH+ DGDF++FNRQPSLHK S+MGHR+++MP
Sbjct: 418  VIRSDGTRIDLRHHKRAGAISLEYGWKVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMP 477

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            YSTFRLNLSVTSPYNADFDGDEMN+HVPQ++ETRAEV+ L MVP  IVSPQ N P+MGIV
Sbjct: 478  YSTFRLNLSVTSPYNADFDGDEMNLHVPQTYETRAEVMNLCMVPLNIVSPQRNGPLMGIV 537

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL G  KI +RD FI K+  MNIL+W  D+DG +PQP ILKPRP WTGKQ+ +LIIPK
Sbjct: 538  QDTLAGVYKICRRDVFITKEHLMNILLWVPDWDGVIPQPAILKPRPRWTGKQIVSLIIPK 597

Query: 588  QINLFRTAAWHADNDKGILTA--GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
             +N     +++A  DK  L A   D    I++G+L+ G + KK +G S   ++H+++ E 
Sbjct: 598  IVN-----SYNASKDKEHLHAPLNDDGCLIQEGQLMYGLMAKKNVGASGNGIVHIVFNEQ 652

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GPDAA  F    Q ++NYWLL N FSIGIGDTI + +T+E I   I+K K  V  L+++A
Sbjct: 653  GPDAAMAFFNGCQRVINYWLLHNGFSIGIGDTIPNKETIEQIEKAIAKQKAEVTELVEKA 712

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  + E+FE++V++ LN AR+ AG+  +  L + NN   M  +GSKGS IN
Sbjct: 713  TSNELESLPGMNVRETFESQVSKALNEARNTAGTKTEDGLLDINNAVQMARSGSKGSTIN 772

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQM+A VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHA
Sbjct: 773  ISQMSALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHA 832

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D V 
Sbjct: 833  MAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVI 892

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
             E+Q +D + +    F+  F+ E+  E  + + +  E+ ++L    E + + D E   LE
Sbjct: 893  FENQKMDHINISNKAFNDLFKLEVMSERISTDVL--EHANELYGDLETQQLLDTEFAALE 950

Query: 946  ADRYQLATEIAT----SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
             DR  L   + +      D  + LP+N+ R+I +A++ FK D  + SD+HP +V+  V +
Sbjct: 951  EDRRLLRDFVHSRTKEKDDDHFQLPLNIIRIIDSAKRLFKTDDGKRSDLHPRDVIPRVQQ 1010

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L +R+ +V G D LSVEAQ NAT+F     RS  A KR+     L + AFE ++GE+ESR
Sbjct: 1011 LLDRMIIVRGTDELSVEAQYNATIFIKAQFRSRLAYKRIALGMHLNKLAFEHILGELESR 1070

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F ++LV PGEM+G +AAQSIGEPATQMTLNTFH+ G+S+KNVTLGVPRL+EI+N+A  IK
Sbjct: 1071 FTRALVNPGEMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLGVPRLKEILNIAPNIK 1130

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPS+ V+ + G N+ +E AK ++ A+E+TTLRSVT ATE+++DPD   T IE+DV+ V+S
Sbjct: 1131 TPSMIVY-QDGANANQETAKLLRSAVEHTTLRSVTYATEIYHDPDIQSTTIEDDVDMVES 1189

Query: 1182 YYEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
            Y+ +P+E   +P+  S WLLR+ L+R+ M+DK L +  VA KI + +  DL  IF+D+NA
Sbjct: 1190 YFIIPEEHHDSPDNQSRWLLRLILDRQKMLDKGLKVDDVAIKIKENYPKDLAVIFSDNNA 1249

Query: 1241 DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-------------- 1286
            ++ ++RIR++     K   +D+  E+D+ LK++E+++L  + LRGV              
Sbjct: 1250 EQQVIRIRMIKQSDSK--YDDDDIEEDIMLKRLEAHILDTLTLRGVLGIDRAFLNKDVKL 1307

Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                       +L  V+    VD RRT SNH I++ EV GIEA 
Sbjct: 1308 FEKPDGRLVASREDKDCEEWYLDTSGTSLKDVLIVPGVDPRRTYSNHFIQVFEVFGIEAA 1367

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R AL+ EL +V++FDGSYVN+RHLA+L D MT RGHLMAITRHGINR DTG +MRCSFEE
Sbjct: 1368 RSALMRELTMVLAFDGSYVNHRHLALLTDIMTSRGHLMAITRHGINRADTGALMRCSFEE 1427

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEG 1439
            TV+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  + L+ +ML+  I     +   G
Sbjct: 1428 TVEILLEAAAVGELDDCRGISENVMLGQLAPMGTGEMDVLLDPKMLETVIS---DNSRMG 1484

Query: 1440 LEFGMTPARSPVSG--TPYHDG---MMSPGYLFSPNLRLSPVTDAQFSPYV-------GG 1487
            L  G+ P +    G  TPY DG   +   GYL +P+        AQFSP          G
Sbjct: 1485 LMAGI-PVKGSEGGAATPY-DGQSPLNEGGYLGTPDY------GAQFSPIQSAGSDTPSG 1536

Query: 1488 MAFSPTSSPGYSPSSPGYSPSSPGYSPTSP---------------GYSPTSP----GYSP 1528
             A   +   G SP + G      GYSPTSP               GYSPTSP    G SP
Sbjct: 1537 FATEYSGLGGMSPYAAGSRSPGGGYSPTSPFNASPSSPNFSPSSPGYSPTSPMMGGGASP 1596

Query: 1529 ---TSPGYSPTSPTYSPSSPGYSPTSPAY-SPTSPSYSPTSPSYSPTSP----------- 1573
                SP +SP SP ++P+SP YSPTSP++ SPTSPSYSPTSP+YSPTSP           
Sbjct: 1597 GYAVSPRFSPVSPAFTPTSPAYSPTSPSFVSPTSPSYSPTSPNYSPTSPNIHGSPTSPSY 1656

Query: 1574 ------------SYSPTSPSYSPTSPS----YSPTSPSYSPTSPSYSPTSPAY--SPTSP 1615
                        +YSPTSP+Y+    S     SPTSP YSPTSP++SP+SP +  + TSP
Sbjct: 1657 SPTSPSYSPTSPNYSPTSPNYAGNKVSPGSGLSPTSPVYSPTSPNWSPSSPQHQGNSTSP 1716

Query: 1616 AYSPTSPAYSPTSPSYSPTSP 1636
             YSPTSP+YSPTSP++SPTSP
Sbjct: 1717 KYSPTSPSYSPTSPNFSPTSP 1737



 Score = 95.1 bits (235), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 99/222 (44%), Positives = 124/222 (55%), Gaps = 52/222 (23%)

Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS----YSPTSP--------SYSPTSP 1650
            +SP   A S T   ++         SP Y+  S S    YSPTSP        ++SP+SP
Sbjct: 1523 FSPIQSAGSDTPSGFATEYSGLGGMSP-YAAGSRSPGGGYSPTSPFNASPSSPNFSPSSP 1581

Query: 1651 SYSPTSPSYSP-TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSP 1709
             YSPTSP      SP Y+  SP +SP SP+++PTSP YSPTSPS+             SP
Sbjct: 1582 GYSPTSPMMGGGASPGYA-VSPRFSPVSPAFTPTSPAYSPTSPSF------------VSP 1628

Query: 1710 SSPRLSPASP-YSPTSPNY---------SPTSSSYSPTSPSYSPSSPTY----------- 1748
            +SP  SP SP YSPTSPN          SPTS SYSPTSP+YSP+SP Y           
Sbjct: 1629 TSPSYSPTSPNYSPTSPNIHGSPTSPSYSPTSPSYSPTSPNYSPTSPNYAGNKVSPGSGL 1688

Query: 1749 SPSSPYNAGGGNPDYSPSSPQY---SPSAGYSPSAPGYSPSS 1787
            SP+SP  +   +P++SPSSPQ+   S S  YSP++P YSP+S
Sbjct: 1689 SPTSPVYS-PTSPNWSPSSPQHQGNSTSPKYSPTSPSYSPTS 1729


>gi|21280517|gb|AAM45151.1|AF395110_1 RNA polymerase II largest subunit [Naegleria gruberi]
          Length = 1590

 Score = 1649 bits (4271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 868/1631 (53%), Positives = 1125/1631 (68%), Gaps = 149/1631 (9%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ +  P+F++ F+ TV+ +++SVC +C K+LAD+   +FK+A K  N + R 
Sbjct: 1    ECPGHFGHVRI-HPVFNVLFINTVVKVLQSVCIHCGKLLADKSSLQFKKASKFVNRRKRF 59

Query: 135  KKILDACKNKTKC--EGGDEIDVPGQDGE-EPLKKNKGGCGAQQPKLTIEGMKMIAEYKA 191
            K+++D C+ K KC  E G++ +   Q+   +P  + + GCG  QPK++ +G+K+ AEYK 
Sbjct: 60   KEMIDLCR-KDKCIIETGNKENEQNQEANIDPTFQPRNGCGGLQPKISRDGLKIFAEYKK 118

Query: 192  QRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPI 251
                   QE        KQ LTAER L + KRI  ED +LLG +   ARP+WMIL  LPI
Sbjct: 119  DTSAEAKQEL------TKQELTAERALQIFKRIPAEDLELLGFDKDNARPEWMILTCLPI 172

Query: 252  PPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIA 301
            PPP VRPS          DDLTH+LA II+ N  +++ E++G P H + E  ++LQ+H A
Sbjct: 173  PPPQVRPSVHHGSADRSEDDLTHKLADIIKANAAIQKNEKSGTPLHQMEEMVRMLQYHCA 232

Query: 302  TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 361
            TY +NE PG P AT +SGRP+KSI  RLK KEGR+RGNLMGKRVDFSARTVIT DP I+I
Sbjct: 233  TYVNNEYPGVPTATTKSGRPLKSIRQRLKGKEGRVRGNLMGKRVDFSARTVITADPNIDI 292

Query: 362  DQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYL 421
            DQ+GVP ++A N+T PE VTP+N ERL ELV  GP   PG   AKY+IR+DG R+DLR+ 
Sbjct: 293  DQVGVPRTVASNMTVPEIVTPFNFERLNELVTNGPLTYPG---AKYVIREDGTRIDLRFA 349

Query: 422  K-KSSDH-HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTS 479
              K++D   LE GYKVERHL DGD +LFNRQPSLHKMS+MGHRIK+MPYSTFR+NLSVT+
Sbjct: 350  SGKANDQIQLEYGYKVERHLQDGDVILFNRQPSLHKMSMMGHRIKVMPYSTFRMNLSVTT 409

Query: 480  PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 539
            PYNADFDGDEMN+HVPQS +T+AE+LEL MVP+ I++PQSNRPV+ +VQDTLL   K+T+
Sbjct: 410  PYNADFDGDEMNLHVPQSLQTKAELLELTMVPRNIITPQSNRPVIALVQDTLLAASKLTR 469

Query: 540  RDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHA 599
            RD FI KD+ MN LM   DFDGK+P P ILKP+PLWTGKQ+F  ++PK +NL  T++ H 
Sbjct: 470  RDVFIAKDLMMNCLMHLIDFDGKLPVPAILKPKPLWTGKQLFTFLLPK-VNLENTSSTHE 528

Query: 600  D--NDKGILTAG----DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
            D  + K  L       DT V I++GEL+SG L KK+LG+S GSLIH+I  E G +  +KF
Sbjct: 529  DLTDKKDHLDHDIPEFDTKVLIDRGELVSGVLDKKSLGSSHGSLIHIIVNEKGVNEGKKF 588

Query: 654  LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
            LG  Q ++N+WL+   FSIGIGDTIAD  TME I +TI KA+ +VK ++K AQ+  L  E
Sbjct: 589  LGQCQRVINHWLINRGFSIGIGDTIADKATMEQIEETIRKAEKDVKLIVKDAQEGKLRAE 648

Query: 714  PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
             GRT+ +SFEN+VN+VLN AR++AG+ A+KSL + NN+K+MVTAGSKGS+INISQ+ ACV
Sbjct: 649  AGRTIQQSFENQVNKVLNKAREDAGNKAKKSLKDDNNIKSMVTAGSKGSYINISQIIACV 708

Query: 774  GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
            GQQNVEGKRIP+GF +RTLPHF +DD+GPESRGFV NSYLRGLTPQEFFFH MGGREGLI
Sbjct: 709  GQQNVEGKRIPYGFRNRTLPHFAQDDHGPESRGFVANSYLRGLTPQEFFFHTMGGREGLI 768

Query: 834  DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDS 893
            DTAVKTSETGYIQRRL+KAMEDIMVKYDGTVR++ G+V+QFLYGEDGMD+  +ESQ++D 
Sbjct: 769  DTAVKTSETGYIQRRLIKAMEDIMVKYDGTVRDAQGNVVQFLYGEDGMDAHKVESQSIDI 828

Query: 894  LKMKKSEFDKAFRFE----------------------MDEENWNPNYMLQEYIDDLKT-I 930
            + +  ++F   + +                       + +E++    +  E + D  T +
Sbjct: 829  MNLSDAKFQDKYWYNSLGSSPSFTNPTESSVSMPSGGILKESFISTKVYDEILKDPATYL 888

Query: 931  KELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPR--RPS 988
             ++R+    E + L  DR+ L TEI  + ++   +PVNLKR+I NAQK + + P   +PS
Sbjct: 889  SKVRE----EYKTLMEDRHILRTEIFPNAENKIVMPVNLKRIIKNAQKEYGIHPSIGKPS 944

Query: 989  DMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRV-LKEHRLT 1047
            DM+P+ V+E + KL + L V+ G D LS EAQ NATL F++ LRSTF  K   LK   L 
Sbjct: 945  DMNPIYVIEKIKKLCDDLVVIKGTDELSTEAQTNATLLFSMFLRSTFFFKGCSLKNCVLL 1004

Query: 1048 REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGV 1107
            ++   + + ++E RF   L  PGEM+G VAAQSIGEPATQMTLNTFH+AGVS+KNVTLGV
Sbjct: 1005 KKPLTFWLVKLELRFHNCLAQPGEMVGSVAAQSIGEPATQMTLNTFHFAGVSSKNVTLGV 1064

Query: 1108 PRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDP 1167
            PRL+E++NVAK IKTP L+++L        E+AK V+  LEYTTL  VT A  + YDP+P
Sbjct: 1065 PRLKELLNVAKNIKTPGLTIYLNNEYIGDFEKAKMVKEDLEYTTLGHVTAAASIVYDPEP 1124

Query: 1168 MGTIIEEDVEFVKSYYEMPDEDIAPEK--ISPWLLRIELNREMMVDKKLSMAAVAEKINQ 1225
              ++IEED EF++   E   +    +   ++PW LR EL++ MM D  L+MA VA+KI +
Sbjct: 1125 ANSVIEEDREFIEELLEELKDTAVLDSTTLNPWSLRFELDKMMMSDT-LTMAQVAKKIQE 1183

Query: 1226 EFDDDLTCIFNDDNADKLILRIRIMNDEA-----------PKGELNDESAEDDV------ 1268
            EF +D+TC ++DDNADKLIL +RI  D+            P  E+  +  E+D+      
Sbjct: 1184 EFQNDITCFYSDDNADKLILVVRIHKDDKEKEKDAQVAKDPSDEVLRKLEEEDIENSTVE 1243

Query: 1269 FLKKIESNMLTEMALRG-----------------------------------VNLLAVMC 1293
            FL+++ESNML E+AL+G                                    NLLAV+ 
Sbjct: 1244 FLRRLESNMLNELALKGYKDLKKVFLREENDKKVFSSSGVATVKQWVLDTEGCNLLAVLS 1303

Query: 1294 HEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYR 1353
            H  VD   TTSN + EI++VLGIEA R AL+ E+R VI FDGSYVNYRHLAILCD MT+R
Sbjct: 1304 HPYVDHTITTSNDVNEILDVLGIEACRNALMREMRKVIEFDGSYVNYRHLAILCDVMTHR 1363

Query: 1354 GHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGT 1413
            G LMAITR GINR+DTGP+MRCSFEETV+IL++AA FA++D L+GV+ N+M+GQLAPIGT
Sbjct: 1364 GGLMAITRRGINRSDTGPLMRCSFEETVEILIEAATFADTDTLKGVSANVMVGQLAPIGT 1423

Query: 1414 GDCSLYLNDEMLKNAIELQLPSY------MEGLEFGMTPARSPVSGTPYHDGMMSPGYLF 1467
            G   LYL++E+LK A+ ++ PS+      M G     TP  +    TPYH G+ +P +  
Sbjct: 1424 GCFGLYLDEELLKQAVAVK-PSFVTETKSMYGSLGATTPYHTSGLATPYHGGVATPYHGG 1482

Query: 1468 SPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYS 1527
            +     SP T    +P   G   SP    G+SPS            P +  +SP +   S
Sbjct: 1483 AS----SPWTQGAMTPL--GRTPSPEYQGGFSPS------------PYNSAFSPVAS--S 1522

Query: 1528 PTSPGYSPTSPTYSPSSPG-YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
            PTSPG+      YSPSSPG YSPTSPAYSP+SP+YSPTSP+YSPTSP+YSPTSP+YSPTS
Sbjct: 1523 PTSPGHQGG---YSPSSPGNYSPTSPAYSPSSPNYSPTSPAYSPTSPNYSPTSPAYSPTS 1579

Query: 1587 PSYSPTSPSYS 1597
            P+YSPTSP+YS
Sbjct: 1580 PNYSPTSPAYS 1590



 Score =  113 bits (282), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/83 (72%), Positives = 70/83 (84%), Gaps = 7/83 (8%)

Query: 1604 SPTSPAYSPTSPAYSPTSPA----YSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
            SP + A+SP   A SPTSP     YSP+SP +YSPTSP+YSP+SP+YSPTSP+YSPTSP+
Sbjct: 1510 SPYNSAFSPV--ASSPTSPGHQGGYSPSSPGNYSPTSPAYSPSSPNYSPTSPAYSPTSPN 1567

Query: 1659 YSPTSPAYSPTSPGYSPTSPSYS 1681
            YSPTSPAYSPTSP YSPTSP+YS
Sbjct: 1568 YSPTSPAYSPTSPNYSPTSPAYS 1590



 Score =  111 bits (278), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 70/86 (81%), Gaps = 6/86 (6%)

Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPAYSPT 1669
            SP + A+SP   A SPTSP +      YSP+SP +YSPTSP+YSP+SP+YSPTSPAYSPT
Sbjct: 1510 SPYNSAFSPV--ASSPTSPGHQG---GYSPSSPGNYSPTSPAYSPSSPNYSPTSPAYSPT 1564

Query: 1670 SPGYSPTSPSYSPTSPTYSPTSPSYN 1695
            SP YSPTSP+YSPTSP YSPTSP+Y+
Sbjct: 1565 SPNYSPTSPAYSPTSPNYSPTSPAYS 1590



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 66/86 (76%), Gaps = 6/86 (6%)

Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPAYSPTSPGYSPT 1676
            SP + A+SP + S  PTSP +      YSP+SP +YSPTSP+YSP+SP YSPTSP YSPT
Sbjct: 1510 SPYNSAFSPVASS--PTSPGHQG---GYSPSSPGNYSPTSPAYSPSSPNYSPTSPAYSPT 1564

Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYS 1702
            SP+YSPTSP YSPTSP+Y+P S  YS
Sbjct: 1565 SPNYSPTSPAYSPTSPNYSPTSPAYS 1590



 Score = 95.5 bits (236), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/112 (51%), Positives = 69/112 (61%), Gaps = 32/112 (28%)

Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            SP + ++SP + S  PTSP +      YSP+SP +YSPTSPAYSP+SP YSPTSP+YSPT
Sbjct: 1510 SPYNSAFSPVASS--PTSPGHQG---GYSPSSPGNYSPTSPAYSPSSPNYSPTSPAYSPT 1564

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYS 1735
            SP YSPTSP+Y                          SPTSPNYSPTS +YS
Sbjct: 1565 SPNYSPTSPAY--------------------------SPTSPNYSPTSPAYS 1590



 Score = 92.8 bits (229), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/99 (58%), Positives = 66/99 (66%), Gaps = 20/99 (20%)

Query: 1653 SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP-TYSPTSPSYNPQSAKYSPSLAYSPSS 1711
            SP + ++SP   A SPTSPG+      YSP+SP  YSPTSP             AYSPSS
Sbjct: 1510 SPYNSAFSPV--ASSPTSPGHQG---GYSPSSPGNYSPTSP-------------AYSPSS 1551

Query: 1712 PRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYS 1749
            P  SP SP YSPTSPNYSPTS +YSPTSP+YSP+SP YS
Sbjct: 1552 PNYSPTSPAYSPTSPNYSPTSPAYSPTSPNYSPTSPAYS 1590



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/104 (51%), Positives = 71/104 (68%), Gaps = 16/104 (15%)

Query: 1684 SPTYSPT-SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP-NYSPTSSSYSPTSPSY 1741
            SP Y    SPS  P ++ +SP +A SP+SP       YSP+SP NYSPTS +YSP+SP+Y
Sbjct: 1500 SPEYQGGFSPS--PYNSAFSP-VASSPTSP--GHQGGYSPSSPGNYSPTSPAYSPSSPNY 1554

Query: 1742 SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYS 1784
            SP+SP YSP+SP        +YSP+SP YSP++  YSP++P YS
Sbjct: 1555 SPTSPAYSPTSP--------NYSPTSPAYSPTSPNYSPTSPAYS 1590



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 55/90 (61%), Gaps = 8/90 (8%)

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYS 1764
            L  +PS       SP SP +  +SP +SS  PTSP +      YSPSSP N    +P YS
Sbjct: 1495 LGRTPSPEYQGGFSP-SPYNSAFSPVASS--PTSPGHQGG---YSPSSPGNYSPTSPAYS 1548

Query: 1765 PSSPQYSPSA-GYSPSAPGYSPSSTSQYTP 1793
            PSSP YSP++  YSP++P YSP+S + Y+P
Sbjct: 1549 PSSPNYSPTSPAYSPTSPNYSPTSPA-YSP 1577


>gi|413915226|gb|AFW21475.1| RNA polymerase II largest subunit [Epichloe amarillans]
          Length = 1752

 Score = 1648 bits (4268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 874/1767 (49%), Positives = 1167/1767 (66%), Gaps = 151/1767 (8%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG++SP+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
            +KC+TCT  M++CPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F  
Sbjct: 67   LKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            A++ R+ K R  ++   CK K +CE  D  +   ++   G +P+  N GGCG  QP++  
Sbjct: 127  AIQTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKPVVNNHGGCGNVQPQVRQ 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNPKY 238
              +++ A +         QE  P+   R++T  +T E   G+LKRIS+ED + +GLN  Y
Sbjct: 187  AALQLKAAFDVV------QEDGPK---RRETVPITPEMAHGILKRISEEDLRQMGLNSDY 237

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+W+I+ V             +      +R  DDLT++L  IIR N N+++  R G+P
Sbjct: 238  ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG   A
Sbjct: 358  DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR+++
Sbjct: 415  KYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRV 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N P+MG
Sbjct: 475  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGPLMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            +VQD+L G  K+ +RDTF++K++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ +++I
Sbjct: 535  VVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVI 594

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            PK+I+L    +     D   +   DT + I+ GELL G L KK +G++ G ++H+ + E+
Sbjct: 595  PKEISLHSPES-SGGQDNADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP+ A  FL   Q +V YWLL N  SIGIGDT+ D +T+E +   I   K  V  L  QA
Sbjct: 654  GPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  +  +FENKV+  LN+ARD+AG++ Q+SL +SNN   M  +GSKGS IN
Sbjct: 714  TANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHA
Sbjct: 774  ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D++ 
Sbjct: 834  MAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLDAMC 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEM-DEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE Q L  LKM  + F+  +R ++ +  +W   +Y   EY ++L   KE  D+ D+E   
Sbjct: 894  IEKQKLGILKMSDAAFETKYRLDLANPPDWFKKDY---EYGNELAGDKESMDLLDSEWDH 950

Query: 944  LEADRYQLATEIATS-GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            L  DR  +     T  G+    LP+N+ R+I  A++ F V     S++ P +V+  +  L
Sbjct: 951  LLNDRRIVRLINRTKMGEEMMQLPLNIGRIIETAKRVFNVRATDRSNLRPADVIPRIQNL 1010

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
               LK+V G DP+S+EA ++AT+ F  L+RS  A K ++K HRL + AF+ V+GE+++R+
Sbjct: 1011 LSDLKIVRGSDPISIEADESATILFKALIRSRLAFKEIVKVHRLNKLAFDHVLGELQNRW 1070

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             +S V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK IKT
Sbjct: 1071 DRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIKT 1130

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS++V+L   +  T+E+AK ++  +EYT LRS+T  TE++YDPD  GT I ED++ V+SY
Sbjct: 1131 PSMAVYLNTHL-GTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVESY 1189

Query: 1183 YEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            + +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+  DL  IF+D+NAD
Sbjct: 1190 FLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDNNAD 1249

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            + ++RIR +  +  K E  ++  EDDV LK++E+++L  + LRGV               
Sbjct: 1250 EQVIRIRTIRTDNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTRLV 1309

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                       L  V+  + VD  RT +N L +I+EV GIEA R
Sbjct: 1310 VDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIEAAR 1369

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSFEET
Sbjct: 1370 SALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSFEET 1429

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  ++L+ +ML+  I     +   GL
Sbjct: 1430 VEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPKMLETVIS---DNSRMGL 1486

Query: 1441 EFGMTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGY 1498
              GM        G  TPY  G  SP    S  + +S      FSP  G  + +PT   G 
Sbjct: 1487 MPGMPVKEGEAEGAATPYDTG--SPMSNDSGYMSISSPAAGNFSPIQGAGSGTPTGFGGI 1544

Query: 1499 SPSSPGY--SPSSP-GYSPTSPGYSPTSPGYSPTSP--GYSPTSPTYSPSSPGY------ 1547
               SP     P+SP   SPTSP  +  +PGYSP+SP  GYSPTSP     +  Y      
Sbjct: 1545 VSVSPYLVRDPTSPFSTSPTSPFSASMAPGYSPSSPNAGYSPTSPLLDGGAGRYVTSPSF 1604

Query: 1548 -----------------SPTSPAYSPTSPSYSPTSPS----YSPTSPSY--SPTSPSYSP 1584
                             SP SP YSPTSPSYSPTSP+    YSPTSP+   SPTSPSYSP
Sbjct: 1605 SPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSP 1664

Query: 1585 TSPSYSPTSP-------------------------SYSPTSPSYSPTSPA--YSPTSPAY 1617
             SP+YSP SP                         +YSPTSPS+   SP    SPTSP+Y
Sbjct: 1665 ASPNYSPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQ-RSPGNQQSPTSPSY 1723

Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
            SPTSPA+SP +P    +   YSP SPS
Sbjct: 1724 SPTSPAFSPRTPGPGNSGNQYSPNSPS 1750



 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 95/254 (37%), Positives = 121/254 (47%), Gaps = 73/254 (28%)

Query: 1597 SPTSPSYSPTSPAYSPTSPAYS---PTSP--AYSPTSP-SYSPTSPSYSPTSPSYSPTSP 1650
            SP + ++SP   A S T   +      SP     PTSP S SPTSP  +  +P YSP+SP
Sbjct: 1521 SPAAGNFSPIQGAGSGTPTGFGGIVSVSPYLVRDPTSPFSTSPTSPFSASMAPGYSPSSP 1580

Query: 1651 S--YSPTSPSYSPTSPAY-----------------------SPTSPGYSPTSPSYSPTSP 1685
            +  YSPTSP     +  Y                       SP SP YSPTSPSYSPT  
Sbjct: 1581 NAGYSPTSPLLDGGAGRYVTSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPT-- 1638

Query: 1686 TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSS 1745
              SPTSP +            YSP+SP    A   SPTSP+YSP S +YSP SP+   + 
Sbjct: 1639 --SPTSPRH------------YSPTSP----AQFNSPTSPSYSPASPNYSPASPNLHGAG 1680

Query: 1746 ------------------PTYSPSSP-YNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSP 1785
                                YSP+SP +    GN   SP+SP YSP++  +SP  PG   
Sbjct: 1681 PTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGN-QQSPTSPSYSPTSPAFSPRTPGPG- 1738

Query: 1786 SSTSQYTPQTNRDD 1799
            +S +QY+P +  +D
Sbjct: 1739 NSGNQYSPNSPSND 1752


>gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga
            brevicollis]
          Length = 1743

 Score = 1647 bits (4265), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 875/1762 (49%), Positives = 1154/1762 (65%), Gaps = 161/1762 (9%)

Query: 76   CPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NPKNR 133
            CPGHFGH+ LAKP+FH GF+  ++S++R VC  CSK+  +  D + +  L     NPK+R
Sbjct: 1    CPGHFGHIVLAKPVFHAGFLPKIISVLRCVCLYCSKLRVEHSDQQLQAILSQTKDNPKHR 60

Query: 134  LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKL---TIEG--MKMIAE 188
            L+ +   C NK +C   +  D    +G+  +  + GGCG  QP++     EG  ++++ E
Sbjct: 61   LQAVSRLCSNKRQCHRDEPPDTFNPEGQPEVALSAGGCGKMQPRVRRSQEEGRTLQLLGE 120

Query: 189  YKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV 248
            ++   + NDD+      V+RK+ +TA  VL   + ISDEDC+++G +P Y RPD+MI++V
Sbjct: 121  WE---EVNDDE------VDRKRPITAAEVLKCFRGISDEDCRIIGFDPVYTRPDFMIIEV 171

Query: 249  LPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQF 298
            LP+PP  VRPS          DDLT+QL  II+ N +L+    NGA  H+I E  + +QF
Sbjct: 172  LPVPPLAVRPSVELGESGHSADDLTYQLGDIIKTNISLQENIANGATPHMIEECVEYIQF 231

Query: 299  HIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPT 358
             +AT  DN LP  P++ QRSGRPIK+I  RLK KEGR+RGNLMGKRVDFSARTVITPDP 
Sbjct: 232  KVATLMDNNLPHMPQSQQRSGRPIKAISQRLKGKEGRVRGNLMGKRVDFSARTVITPDPN 291

Query: 359  INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDL 418
            + IDQ+GVP ++A  LT PE VT +N+ ++ + V  GP   PG   A+YII++DG R+DL
Sbjct: 292  LAIDQVGVPRTVAAKLTVPERVTNFNLNKMNQYVANGPTQHPG---ARYIIQEDGTRIDL 348

Query: 419  RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVT 478
               +  SD  L+ G+ VERHL D D ++FNRQP+LHKMS+MGHR+K++P+STFR+NLSVT
Sbjct: 349  HIARSHSDRTLQPGFIVERHLQDNDVIIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSVT 408

Query: 479  SPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKIT 538
            SPYNADFDGDEMN+HVPQS  +RAE+ E+MMV K I++PQSNRPVMGI+QDTL   R++T
Sbjct: 409  SPYNADFDGDEMNLHVPQSLGSRAEIEEIMMVHKNILTPQSNRPVMGIIQDTLTVARRMT 468

Query: 539  KRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWH 598
             RD FIE++  M++LMW  ++DGK+P P I+ P+ LWTGKQ+ ++IIP++INL    + H
Sbjct: 469  FRDCFIEREQLMHLLMWMPNWDGKIPVPAIVAPKELWTGKQLVSMIIPRRINLEGKHSTH 528

Query: 599  ADN-DKGI--LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLG 655
             D  D+    LT  DT V I KG L+SG LCK  LG   G +IH I  E G + AR+F G
Sbjct: 529  EDKVDRATPYLTVHDTKVIISKGVLISGILCKSMLGAKGGGVIHAITVEHGLEEARQFYG 588

Query: 656  HTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPG 715
            + Q ++N WLL +  SIGIGD +AD  T + I +   +A  +V  LI +AQ   ++P+PG
Sbjct: 589  NIQTVINNWLLIHGHSIGIGDAVADQDTNKRIEELTQEATRSVDELITKAQADDIKPKPG 648

Query: 716  RTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQ 775
             T+ E+FE +VN VLN   ++AG SAQ SLS  NN KAM TAGSKG  INISQ+ ACVGQ
Sbjct: 649  NTVRETFEVEVNTVLNDMVNKAGKSAQNSLSIHNNFKAMSTAGSKGGPINISQIIACVGQ 708

Query: 776  QNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 835
            QNVEGKRIPFGF  RTLPHF KDDYGP+SRGFV NSY +GL+ QE FFHAMGGREGLIDT
Sbjct: 709  QNVEGKRIPFGFKYRTLPHFVKDDYGPDSRGFVFNSYFKGLSAQEMFFHAMGGREGLIDT 768

Query: 836  AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLK 895
            AVKT+ETGYIQRRLVK+ME + + YDG++RNS GD+IQ  YGEDGMD   +E Q L +L 
Sbjct: 769  AVKTAETGYIQRRLVKSMEGLRLNYDGSIRNSNGDLIQLCYGEDGMDGACLEKQGLPTLT 828

Query: 896  MKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEI 955
                 F++ F    ++      Y++   +DD+    E+    + E Q+L+ DR Q    +
Sbjct: 829  PSDQGFERDFCNTGNKLASLRQYLVGNIVDDINADDEMLQELEDEWQRLQDDR-QFLRSV 887

Query: 956  ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPL 1015
               G++   LPV L+RLI +AQK F +DPRRP+D+ P  V +A+    +RL V+PG+DPL
Sbjct: 888  FPKGEADVVLPVQLRRLIISAQKEFNIDPRRPTDLSPAHVAQAIRTFTDRLVVIPGDDPL 947

Query: 1016 SVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGC 1075
            S  AQ+NATL FN  LRS  +S++ +  HRL  +AF+W++GE+E RF+Q+   PGEM+G 
Sbjct: 948  SKVAQRNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGEVEKRFMQAQAQPGEMVGA 1007

Query: 1076 VAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNS 1135
            +AAQS+GEPATQMTLNTFH AGVSAKNVTLGVPRL+EIINV+KK KTPS+ +F+      
Sbjct: 1008 LAAQSLGEPATQMTLNTFHLAGVSAKNVTLGVPRLKEIINVSKKPKTPSMVLFIGEDKYQ 1067

Query: 1136 TKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKI 1195
             +  A  V  ++E++TL+++  ++ ++YDPD M ++I ED EF+++ Y++ D D+   K 
Sbjct: 1068 DRNTAMKVLFSIEHSTLKTIIHSSSIYYDPDEMNSVIPEDREFLEN-YDIGDFDM--NKW 1124

Query: 1196 SPWLLRIELNREMMVDKKLSMAAVAEKINQEFD-------DDLTCIFNDDNA-DKLILRI 1247
              W+LR EL+R  +  +++    VA+ I +          D +   F   N  D  ++RI
Sbjct: 1125 HRWVLRWELSRREINTRRILPENVAKLIKRAMGAVQDTERDTVMVHFQQGNIEDHTVMRI 1184

Query: 1248 RIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------------- 1286
            R+  D++      D+S   D +L+ +E  +L  + L+G+                     
Sbjct: 1185 RLPRDKSEA----DDSLGPDAYLRLLEDRILHSITLQGIPDITRGYLVTGDSKQPGKQRI 1240

Query: 1287 ---------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLD 1325
                                 ++ +V     VD  R+TSN ++EI    GIE  R+A+  
Sbjct: 1241 FINEEGEFKPQDQFLVETDGSSIQSVFAQRYVDQERSTSNDIVEIFSTFGIEGARKAIEA 1300

Query: 1326 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1385
            E+  VISF GSYVN RHL++LCD MT +G+LMAITRHG+NR +TG +M+ SFEETVDILL
Sbjct: 1301 EMYNVISFGGSYVNARHLSLLCDIMTTKGYLMAITRHGVNRQNTGVLMKASFEETVDILL 1360

Query: 1386 DAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQ--LPSYME--GLE 1441
            +AA   E+DYL+GV+ENIMLGQ+ P GTG   L L+ + L++A+ ++  L       G  
Sbjct: 1361 EAAAHGETDYLKGVSENIMLGQVIPGGTGCFDLLLDQDRLQHAVPVEPGLGGLFAKGGDA 1420

Query: 1442 FGMTPARSPVSGTPYHDGMMSPGYLFSPNL--------RLSPVTDAQFSPYV----GGMA 1489
             G        + TP+  G M+P    SP            SPV    FSP      GG+A
Sbjct: 1421 NGAATPWGEGNATPFGMGGMTPQNASSPYFGAGQTPIGGFSPVVAGAFSPGGMLSPGGIA 1480

Query: 1490 FSPTS--------SPGYSPSSPGYSPSSP-GYSPTSPGYSPTSPGYSPTSPGYSPTSPT- 1539
             SP          SPG   +SP Y PSSP GYSPTSP YSPTSPG SPTSPG+SP SP  
Sbjct: 1481 QSPGGAMSPGGAMSPGVVSASPFYDPSSPAGYSPTSPSYSPTSPGMSPTSPGFSPASPAG 1540

Query: 1540 YSPSSPGYSPTSPAYSPTSP----------------------SYSPTSPSYSPTSPSYSP 1577
            ++P+SP YSPTSP+YSPTSP                      +Y+  SP+YSPTSPSYSP
Sbjct: 1541 FTPTSPHYSPTSPSYSPTSPNVGGAQSPSYSPTSPSYSPSSPAYNAQSPAYSPTSPSYSP 1600

Query: 1578 TSPSY-SPTSP---------------------SYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
            TSP+  SPTSP                     +YSPTSPSYSPTSP+YSPTSP+YSPTSP
Sbjct: 1601 TSPNVKSPTSPGYSPTSPGYSPSSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSP 1660

Query: 1616 AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS- 1674
             YSPTSP+YSPTSP+YSPTSPSYSPTSP+YSPTSPSYSPTSP+YSPTSP+YSPT+ G S 
Sbjct: 1661 NYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTANGTSG 1720

Query: 1675 PTSPSYSPTSPTYSPTSPSYNP 1696
            PTSP YSPTSP YSPTSP Y+P
Sbjct: 1721 PTSPGYSPTSPGYSPTSPGYSP 1742



 Score =  199 bits (507), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 126/155 (81%), Positives = 140/155 (90%), Gaps = 3/155 (1%)

Query: 1489 AFSPTSSPGYSPSSPGY-SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
            A+SPTS P YSP+SP   SP+SPGYSPTSPGYSP+SP YSPTSP YSPTSP+YSP+SP Y
Sbjct: 1590 AYSPTS-PSYSPTSPNVKSPTSPGYSPTSPGYSPSSPSYSPTSPNYSPTSPSYSPTSPNY 1648

Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
            SPTSP+YSPTSP+YSPTSPSYSPTSP+YSPTSPSYSPTSP+YSPTSPSYSPTSP+YSPTS
Sbjct: 1649 SPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTS 1708

Query: 1608 PAYSPTSPAYS-PTSPAYSPTSPSYSPTSPSYSPT 1641
            P+YSPT+   S PTSP YSPTSP YSPTSP YSP+
Sbjct: 1709 PSYSPTANGTSGPTSPGYSPTSPGYSPTSPGYSPS 1743



 Score = 79.3 bits (194), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 79/152 (51%), Gaps = 55/152 (36%)

Query: 1656 SPSYSPTSPAYSPTSP-GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
            SP     SP Y P+SP GYSPTSPSYSPTSP                      SP+SP  
Sbjct: 1494 SPGVVSASPFYDPSSPAGYSPTSPSYSPTSP--------------------GMSPTSPGF 1533

Query: 1715 SPASP--YSPTSPNYSPTSSSYSPTSP----------------------SYSPSSPTYSP 1750
            SPASP  ++PTSP+YSPTS SYSPTSP                      +Y+  SP YSP
Sbjct: 1534 SPASPAGFTPTSPHYSPTSPSYSPTSPNVGGAQSPSYSPTSPSYSPSSPAYNAQSPAYSP 1593

Query: 1751 SSPYNAGGGNPDYSPSSPQY-SPSA-GYSPSA 1780
            +SP         YSP+SP   SP++ GYSP++
Sbjct: 1594 TSP--------SYSPTSPNVKSPTSPGYSPTS 1617



 Score = 73.9 bits (180), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 71/128 (55%), Gaps = 25/128 (19%)

Query: 1670 SPGYSPTSPSYSPTSPT-YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNY 1727
            SPG    SP Y P+SP  YSPTSPSY             SP+SP +SP SP +SP SP  
Sbjct: 1494 SPGVVSASPFYDPSSPAGYSPTSPSY-------------SPTSPGMSPTSPGFSPASP-- 1538

Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPGYSP 1785
                + ++PTSP YSP+SP+YSP+SP N GG        +      +   Y+  +P YSP
Sbjct: 1539 ----AGFTPTSPHYSPTSPSYSPTSP-NVGGAQSPSYSPTSPSYSPSSPAYNAQSPAYSP 1593

Query: 1786 SSTSQYTP 1793
            +S S Y+P
Sbjct: 1594 TSPS-YSP 1600



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 82/158 (51%), Gaps = 49/158 (31%)

Query: 1672 GYSPT-SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSP----SSPRLSPASP--YSPTS 1724
            G+SP  + ++SP     SP   + +P  A  SP  A SP    +SP   P+SP  YSPTS
Sbjct: 1459 GFSPVVAGAFSPGG-MLSPGGIAQSPGGA-MSPGGAMSPGVVSASPFYDPSSPAGYSPTS 1516

Query: 1725 PNYSPTS---------------SSYSPTSPSYSPSSPTYSPSSPYNAGGG---------- 1759
            P+YSPTS               + ++PTSP YSP+SP+YSP+SP N GG           
Sbjct: 1517 PSYSPTSPGMSPTSPGFSPASPAGFTPTSPHYSPTSPSYSPTSP-NVGGAQSPSYSPTSP 1575

Query: 1760 ------------NPDYSPSSPQYSPSA--GYSPSAPGY 1783
                        +P YSP+SP YSP++    SP++PGY
Sbjct: 1576 SYSPSSPAYNAQSPAYSPTSPSYSPTSPNVKSPTSPGY 1613



 Score = 47.0 bits (110), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 17/96 (17%)

Query: 1698 SAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAG 1757
            +  +SP    SP     SP    SP               SP    +SP Y PSSP    
Sbjct: 1465 AGAFSPGGMLSPGGIAQSPGGAMSPGGA-----------MSPGVVSASPFYDPSSPAGYS 1513

Query: 1758 GGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
              +P YSP+SP      G SP++PG+SP+S + +TP
Sbjct: 1514 PTSPSYSPTSP------GMSPTSPGFSPASPAGFTP 1543


>gi|242778248|ref|XP_002479200.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Talaromyces stipitatus ATCC 10500]
 gi|218722819|gb|EED22237.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Talaromyces stipitatus ATCC 10500]
          Length = 1755

 Score = 1646 bits (4263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 899/1787 (50%), Positives = 1184/1787 (66%), Gaps = 118/1787 (6%)

Query: 2    DTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGT 59
            +  FPYS A +  ++ +QFG+ SP+EI+++SVV +E+ ET   +R +P+  G +DPRLGT
Sbjct: 3    NVHFPYSKAPLRTIKEIQFGLFSPEEIKRLSVVHVEYPETMDEQRMRPRTKGPNDPRLGT 62

Query: 60   IDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH 119
            +DR+  CETC     ECPGHFGH+ELA P+FHIGF+     ++ +VC NC KI AD  D 
Sbjct: 63   LDRQYYCETCEEGQKECPGHFGHIELATPVFHIGFLTKTKKLLETVCHNCGKIKADMSDP 122

Query: 120  KFKQALKIRNPKNRLKKILDACKNKTKCEGG---DEIDVPGQDGEEPLKKNKGGCGAQQP 176
            KF+ AL+IR+PK R   I    K+   CE     ++ D   ++G +P  K  GGCG  QP
Sbjct: 123  KFQDALRIRDPKRRFDIIWRLSKDVAICEADPLPEDEDPFSKEGSKP-HKGHGGCGNAQP 181

Query: 177  KLTIEGMKMIAEYKAQRKKN-DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
             +  EG+ ++  +K  +    +D   +P+P   K+T+T      + + IS ED +++GL+
Sbjct: 182  TIRKEGLSLVGTWKPNKANMMEDDIDIPQP--EKRTITPAMAYNIFRSISHEDVRIMGLS 239

Query: 236  PKYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WMIL VL +PPP V             R  DDLT +LA IIR N+NL+R E+ 
Sbjct: 240  NDYARPEWMILTVLIVPPPVVRPSVVSGKSSSGQRAEDDLTFKLAEIIRANQNLQRCEQE 299

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            GAP H++ EF  LLQ+H+ATY DN++ GQP+A  +S RP+K+I  RLK KEGR+R NLMG
Sbjct: 300  GAPEHVVREFEALLQYHVATYMDNDIAGQPKAMTKSNRPVKAIRGRLKGKEGRLRQNLMG 359

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVI  DP +++ ++G P S A+ LTYPE VTPYNIE L++LV  GP   PG 
Sbjct: 360  KRVDFSARTVICGDPNLSLFEVGTPRSSAMILTYPEVVTPYNIEFLQKLVNNGPTIYPG- 418

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              A+YI+RD+G+R+DLR  +K+S + L  G+KVERHL DGD +LFNRQPSLHK S+M HR
Sbjct: 419  --ARYIVRDNGERIDLRMARKTSSNLL-YGWKVERHLLDGDVILFNRQPSLHKESMMAHR 475

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +++MPYSTFRLNLSVT+PYNADFDGDEMNMHVPQS E RAE+ EL +VP  IVSPQ N P
Sbjct: 476  VRVMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQSEEARAELQELALVPLNIVSPQRNGP 535

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            +MGIVQD+L G  KI +RD F+ KD  MN+++W  D+DG +PQP ILKPRP WTGKQ+ +
Sbjct: 536  LMGIVQDSLCGIYKICRRDVFLTKDQVMNLMLWVPDWDGVIPQPAILKPRPRWTGKQIIS 595

Query: 583  LIIPKQINLFRTAAWHADNDKGILTA-----GDTLVRIEKGELLSGTLCKKTLGTSTGSL 637
            +++P  +NL R      D DK  L+       D  + +  G+L+ G   KKT+G S G +
Sbjct: 596  MVLPSGLNLLRI-----DKDKAPLSEKFSPLADGGLLVHGGQLMYGMFSKKTVGASGGGI 650

Query: 638  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNN 697
            +H I+ E GPDAA  F    Q +VNYWLL N FSIGIGDTI D KT+E I   +   K  
Sbjct: 651  VHTIFNEYGPDAAVTFFDGAQRVVNYWLLHNGFSIGIGDTIPDKKTIERIEAAVRAGKAE 710

Query: 698  VKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTA 757
            V+ +++ A + +LEP PG  + E+FE+KV++ LN AR+EAGS  +KSL + NN   M  +
Sbjct: 711  VEQIVQSATENTLEPLPGMNIRETFESKVSRALNNAREEAGSETEKSLKDLNNAVQMARS 770

Query: 758  GSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLT 817
            GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLT
Sbjct: 771  GSKGSTINISQMTAIVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLT 830

Query: 818  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 877
            P EF+FHAMGGREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD+IQFLYG
Sbjct: 831  PTEFYFHAMGGREGLIDTAVKTAETGYIQRKLVKALEELMVKYDGTVRNSLGDIIQFLYG 890

Query: 878  EDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRD 935
            EDG+D   IE+Q +D +K    +F   FR + MD E    P  +  E   +++   E++ 
Sbjct: 891  EDGLDGAHIENQRVDIIKCSDEQFRDRFRVDLMDPERTLGPEVL--EQAAEIEGDVEVQR 948

Query: 936  VFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEV 995
              D E + L  DR +    +A   +    LP+N++R++ +A+ TF +     SD+HP EV
Sbjct: 949  YLDEEWEALLKDR-EFLRSVAKGDEEMMQLPLNVQRILESAKTTFHIKEGTISDLHPAEV 1007

Query: 996  VEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVI 1055
            +  V  L +RL +V G+D +S EAQ +ATL F   LRS  A KR++ ++ + + AF  V+
Sbjct: 1008 IPQVQALLDRLVIVRGDDVISKEAQTSATLLFKAQLRSRLAFKRLVTQYSMNKLAFNHVL 1067

Query: 1056 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1115
            G IE RF ++   PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N
Sbjct: 1068 GAIEMRFARAQANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILN 1127

Query: 1116 VAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEED 1175
            VA  IKTPS++V+ +P     KE AK ++  +E+T+LRSVTEATE++YDPD   T+IE D
Sbjct: 1128 VATNIKTPSMTVYQEPHRKHDKESAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVIEND 1187

Query: 1176 VEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTC 1233
             + V+SY+ +P ED+A +  + S WLLRI L+R  ++DK L++  VA +I +++  D+  
Sbjct: 1188 RDMVESYFIIP-EDVADDSSRQSKWLLRIVLSRPKLLDKGLTVQDVATRIKEQYPRDIAV 1246

Query: 1234 IFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------- 1286
            IF+D+NAD+ ++RIR ++D     +  D   +  V LKK+E ++L  + LRGV       
Sbjct: 1247 IFSDNNADEQVIRIRQLHDAKEDEDEEDMEYD--VTLKKLEQHLLDTLTLRGVAGVERAF 1304

Query: 1287 -----NLLAV------------MCHE-----------------DVDARRTTSNHLIEIIE 1312
                 N+  +            +C E                  VD  RT SN  IE+ E
Sbjct: 1305 INEKDNVRVMEDGSLFQSKTDPLCKEWVLETSGSALADVLTIPGVDTSRTYSNQFIEVFE 1364

Query: 1313 VLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPM 1372
            V GIEA R A+L EL  V++FDGSYVN+RHLA+L D MT RG+L  +TRHGINR D G +
Sbjct: 1365 VFGIEAARTAVLRELTQVLAFDGSYVNHRHLALLVDVMTVRGYLTPVTRHGINRADNGAL 1424

Query: 1373 MRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQ 1432
            MRCSFEETV+ILL+AA F E D  RGV+EN++LGQLAP GTG+  +YL+  ML   +   
Sbjct: 1425 MRCSFEETVEILLEAAAFGELDDCRGVSENLILGQLAPAGTGEFDVYLDQNMLNTVVS-- 1482

Query: 1433 LPSYMEGLEFGMTPARSPV---SGTPYHDG--MMSPGYLFSPNLRLSPVTDAQFSPYVGG 1487
              +   GL  G+    + +   + T Y +   MM  GY+ +P+       DA+FSP    
Sbjct: 1483 -SNTGIGLMGGLGAKDAMINDGAATQYDNNSPMMENGYIGTPD------PDAKFSPIRQA 1535

Query: 1488 MAFSPTSSPGYSPSSP--GYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP 1545
             + +P     Y PS    G+SP+     P SPG      GYSPTSP  +         S 
Sbjct: 1536 GSETPAGFTSYQPSQGLGGFSPA-----PQSPG------GYSPTSPFNTSPVSPGYSPSS 1584

Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
             YSP SP  S TSP +  TSP +SP+SP++  TSP+YSPTSPSY   SPSYSPTSP +SP
Sbjct: 1585 SYSPASPGMSITSPRFV-TSPGFSPSSPNFQTTSPAYSPTSPSYQQASPSYSPTSPRFSP 1643

Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP- 1664
            +SP YSP+SP  S +SPA+SPTSP+YSPTSP+   T    SPTSP YSP SP++SPTSP 
Sbjct: 1644 SSPNYSPSSPNMSLSSPAFSPTSPTYSPTSPAIGGTRQFSSPTSPKYSPASPAWSPTSPE 1703

Query: 1665 AYSPTSPGY--SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSP 1709
             YSPTSP    SPTSP+   TSP+YSPTSP YNP     +P    +P
Sbjct: 1704 IYSPTSPNIHGSPTSPARGGTSPSYSPTSPQYNPTYVYTNPGEVPAP 1750



 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/225 (48%), Positives = 137/225 (60%), Gaps = 17/225 (7%)

Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA-YSPTSPAYSPTSPAYSPTSPSYSP 1633
            +SP   + S T   ++   PS      S +P SP  YSPTSP  +         S SYSP
Sbjct: 1529 FSPIRQAGSETPAGFTSYQPSQGLGGFSPAPQSPGGYSPTSPFNTSPVSPGYSPSSSYSP 1588

Query: 1634 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
             SP  S TSP +  TSP +SP+SP++  TSPAYSPTSP Y   SPSYSPTSP +SP+SP+
Sbjct: 1589 ASPGMSITSPRFV-TSPGFSPSSPNFQTTSPAYSPTSPSYQQASPSYSPTSPRFSPSSPN 1647

Query: 1694 YNPQSAKYSPSL-AYSPSSPRLSPASPY--------SPTSPNYSPTSSSYSPTSPS-YSP 1743
            Y+P S   S S  A+SP+SP  SP SP         SPTSP YSP S ++SPTSP  YSP
Sbjct: 1648 YSPSSPNMSLSSPAFSPTSPTYSPTSPAIGGTRQFSSPTSPKYSPASPAWSPTSPEIYSP 1707

Query: 1744 SSPTY--SPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPS 1786
            +SP    SP+SP   GG +P YSP+SPQY+P+  Y  + PG  P+
Sbjct: 1708 TSPNIHGSPTSPAR-GGTSPSYSPTSPQYNPT--YVYTNPGEVPA 1749



 Score = 98.6 bits (244), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/196 (46%), Positives = 125/196 (63%), Gaps = 19/196 (9%)

Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSP 1654
            +SP   + S T   ++   P+      + +P SP  YSPTSP  +         S SYSP
Sbjct: 1529 FSPIRQAGSETPAGFTSYQPSQGLGGFSPAPQSPGGYSPTSPFNTSPVSPGYSPSSSYSP 1588

Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
             SP  S TSP +  TSPG+SP+SP++  TSP YSPTSPSY     + SPS  YSP+SPR 
Sbjct: 1589 ASPGMSITSPRFV-TSPGFSPSSPNFQTTSPAYSPTSPSYQ----QASPS--YSPTSPR- 1640

Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDY-SPSSPQYSPS 1773
                 +SP+SPNYSP+S + S +SP++SP+SPTYSP+SP  A GG   + SP+SP+YSP+
Sbjct: 1641 -----FSPSSPNYSPSSPNMSLSSPAFSPTSPTYSPTSP--AIGGTRQFSSPTSPKYSPA 1693

Query: 1774 A-GYSPSAPG-YSPSS 1787
            +  +SP++P  YSP+S
Sbjct: 1694 SPAWSPTSPEIYSPTS 1709



 Score = 77.4 bits (189), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 68/185 (36%), Positives = 95/185 (51%), Gaps = 35/185 (18%)

Query: 1638 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP-TYSPTSPSYNP 1696
            +SP   + S T   ++   PS      + +P SPG       YSPTSP   SP SP Y+P
Sbjct: 1529 FSPIRQAGSETPAGFTSYQPSQGLGGFSPAPQSPG------GYSPTSPFNTSPVSPGYSP 1582

Query: 1697 QSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP--- 1753
             S+    S   S +SPR   +  +SP+SPN+  TS +YSPTSPSY  +SP+YSP+SP   
Sbjct: 1583 SSSYSPASPGMSITSPRFVTSPGFSPSSPNFQTTSPAYSPTSPSYQQASPSYSPTSPRFS 1642

Query: 1754 ----------YNAGGGNPDYSPSSPQYSPSA---------------GYSPSAPGYSPSST 1788
                       N    +P +SP+SP YSP++                YSP++P +SP+S 
Sbjct: 1643 PSSPNYSPSSPNMSLSSPAFSPTSPTYSPTSPAIGGTRQFSSPTSPKYSPASPAWSPTSP 1702

Query: 1789 SQYTP 1793
              Y+P
Sbjct: 1703 EIYSP 1707


>gi|451846374|gb|EMD59684.1| hypothetical protein COCSADRAFT_164565 [Cochliobolus sativus ND90Pr]
          Length = 1737

 Score = 1645 bits (4261), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 886/1760 (50%), Positives = 1182/1760 (67%), Gaps = 143/1760 (8%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ +QFG+LSP+EI+ MSVV I + ET   ++ KP+  GL+DP+LGTIDR   C TC  +
Sbjct: 16   IKEIQFGLLSPEEIKAMSVVHIIYPETMDEQKQKPREQGLNDPKLGTIDRMYSCATCKED 75

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKN 132
            +  CPGHFGH+EL  P+FH+GF+  +  ++ +VC  C  I AD +   ++ A + ++ K 
Sbjct: 76   IQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGMIKADFNHPDWQAAARTKDAKK 135

Query: 133  RLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPK-LTIEGMKM 185
            R  KI    + K  C          QD EE  K+NK      GGCG++QP  +  EG+K+
Sbjct: 136  RFDKIWRMSRTKNVCV---------QDVEESGKENKIPKIPHGGCGSRQPDTIRKEGLKL 186

Query: 186  IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
               +K  +K +DD +      +RK+ +T ++   + K +SD    LLGLN  YARP+WMI
Sbjct: 187  TGTWKQSKKDDDDGQG-----DRKEVITPKQAQTIFKLLSDNTLALLGLNADYARPEWMI 241

Query: 246  LQVLPIPPPP-------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
            L VLP+PPPP             +R  DDLT++L  IIR N+ +   ++ G+P H+ +EF
Sbjct: 242  LDVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANQRVAECQQEGSPQHVTAEF 301

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
              L+Q+H+ATY DN+  G P+A Q+SGRP+K+I  RLK KEGR+RGNLMGKRVDFSARTV
Sbjct: 302  EALVQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDFSARTV 361

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
            IT DP +++DQ+GVP SIA  LTYPE VT +NI +L  LV  GP+  PG   A Y+I+ D
Sbjct: 362  ITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTNLVRNGPNQHPG---ANYVIKAD 418

Query: 413  GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
            G RLDL++ K   D  L+ G+KVERH++D D ++FNRQPSLHK S+MGHR+K+MPYSTFR
Sbjct: 419  GVRLDLKHNKNLDDLRLQYGWKVERHIDDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFR 478

Query: 473  LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
            LNLSVTSPYNADFDGDEMN+HVPQS ETRAE+  L MVPK IVSPQ N+P+MGIVQDTLL
Sbjct: 479  LNLSVTSPYNADFDGDEMNLHVPQSDETRAEIQNLCMVPKQIVSPQKNQPLMGIVQDTLL 538

Query: 533  GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
            G  K+T+RD FI  +  M I+MW  D+DG +P+P ILKPRPLWTGKQ+ ++  P+++N+ 
Sbjct: 539  GVYKMTRRDNFIPIEQVMPIMMWVPDWDGILPEPAILKPRPLWTGKQIVSMAFPREVNIE 598

Query: 593  RT---AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
            +    +    DND       D  + I+ G+L+ G + KK +G S G +IH+++ E+G DA
Sbjct: 599  KKEDDSTPSKDND-----IKDKSLMIKGGQLIYGQVTKKIVGASAGGVIHIVFNELGSDA 653

Query: 650  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
            A KF    Q + N+WLL   FS G+GDTI D  T E I   ISK+K  V+++I  A    
Sbjct: 654  AVKFFNSCQRICNWWLLHYGFSFGVGDTIPDPGTSEKIASEISKSKVKVEDIIATATKDQ 713

Query: 710  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
            LEP PG T+  +FE+KV + LN  R+  G++AQ SL + NN+   V +GSKGS +NISQM
Sbjct: 714  LEPLPGMTIRGTFESKVQKFLNEGREGGGTAAQNSLKDFNNVVQTVVSGSKGSTVNISQM 773

Query: 770  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
             A VGQQ VEG+RIP+GF  RTLPHF+KDDY PESRGFVENSYLRGLTP EFFFHAM GR
Sbjct: 774  VALVGQQAVEGQRIPYGFKYRTLPHFSKDDYSPESRGFVENSYLRGLTPSEFFFHAMAGR 833

Query: 830  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
            EGLIDTAVKT+ETGYIQRRLVKA+ED+MVKYDGTVRNS+GD+++F+YGEDG+D   IE Q
Sbjct: 834  EGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSMGDIVEFIYGEDGLDGAHIEKQ 893

Query: 890  TLDSLKMKKSEFDKAFRFEM--DEENWNPNYMLQE---YIDDLKTIKELRDVFDAEVQKL 944
            ++D +   +  F+ A++ ++   ++   P + L+    +  D+    +++   D E + +
Sbjct: 894  SMDIIMSSEPAFEAAYKLDVLTTDQPEIPVWKLESSPLFQGDV----DVQRALDEEFEAI 949

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRR-PSDMHPMEVVEAVDKLQ 1003
            ++DR  L    +     S+ LP+N+ R+I +AQ  F ++P +  S++HP+E ++ V +  
Sbjct: 950  KSDREYLRANASEDDLESFQLPLNIARMIRSAQARFGINPEKAASNLHPIETIKQVRETL 1009

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
            +RL V+ G D LS EAQ +AT  F   LR+  A K++  EHRL +EA  +V+GE+E RFL
Sbjct: 1010 DRLVVIRGTDELSREAQDSATYLFKAHLRARLAFKKLAVEHRLNKEALSYVLGELEDRFL 1069

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            ++ VAPGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+A  IKTP
Sbjct: 1070 KAAVAPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNIAANIKTP 1129

Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
            S+ V  +    +++++AK ++  +E TTLRS+T+A E++YDP+   T++E+D + V+SY+
Sbjct: 1130 SMLV-RQADSKASQQQAKLLRSTIELTTLRSLTQAVELYYDPEIQSTLVEDDQDMVESYF 1188

Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
             +P+ED   E  S WLLRI L+R+ ++DK +++  VA KI +EF  +L  IF+D+NAD+ 
Sbjct: 1189 ILPEEDEVIESQSKWLLRIILDRKKLLDKSITIGEVAGKIKEEFKPNLAVIFSDENADEQ 1248

Query: 1244 ILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV----------------- 1286
            ++R+R + D+  + +  DE   D+ +++K+E ++L ++ LRGV                 
Sbjct: 1249 VMRVRFIWDQNLQKDDEDEDERDERWMRKLEKHLLDDVTLRGVRGVERAFIREHTVTVEK 1308

Query: 1287 ------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                    +L  V+  E VDA +T SN  IEI+ VLGIEA R  
Sbjct: 1309 EDRSLMHSKNNDLCKEWVLDTTGTSLAEVLAIEGVDATKTYSNSFIEILGVLGIEAARAG 1368

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            LL EL +V+SFDGSYVN+RH+A+L D M  RG LMAITRHGINRNDTG +MRCSFEETV+
Sbjct: 1369 LLKELGMVLSFDGSYVNHRHMALLVDIMCQRGLLMAITRHGINRNDTGALMRCSFEETVE 1428

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEF 1442
            ILL+AA F E D  RGV+ENIMLGQLAP+GTG+  + +++ ML   +E    S   G   
Sbjct: 1429 ILLEAAGFGELDDCRGVSENIMLGQLAPMGTGEFDVVMDNAMLLTMVEDN--SKAMGAAA 1486

Query: 1443 G---MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGM---------AF 1490
            G   +  A +P   +P +DG    G      +  SP+     S  VGG            
Sbjct: 1487 GNYVVGGADTPYLNSPTYDGGTGIGSY--DQVSFSPIAPTGGSGDVGGFTDYGGTYGGGL 1544

Query: 1491 SPTSSPGYSPSSPGYSPSSPGY-SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY-- 1547
            SP    G SP S G++  SPG+ SP SPG+SPTSPGYSPTSPG +  SP ++ +SPGY  
Sbjct: 1545 SPFDG-GRSPGS-GFTGMSPGFTSPVSPGFSPTSPGYSPTSPGIA--SPRFAATSPGYMA 1600

Query: 1548 SPTSPAYSPTSPSY-SPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSY--SPTSPSY 1603
            SPTSP YSPTSP Y SPTSPSYSPTSP+ YSPTSP YSPTSP+YSPTSP++    TSP+Y
Sbjct: 1601 SPTSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAY 1660

Query: 1604 SPTSPAYSPTSPAYSPTSPAY----------SPTSPSYSPTSPSYSPTSP--SYSPTSPS 1651
            SPTSP YSPTSP YSPTSP Y          SPTSP YSPTSP YSPTSP  ++SPTSP 
Sbjct: 1661 SPTSPQYSPTSPQYSPTSPQYQAGSDRRSPTSPTSPQYSPTSPRYSPTSPAGAFSPTSPR 1720

Query: 1652 YSPTSPSYSPTSPAYSPTSP 1671
            YSPTSP      PAYSPTSP
Sbjct: 1721 YSPTSP-----GPAYSPTSP 1735



 Score = 63.2 bits (152), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 70/144 (48%), Gaps = 25/144 (17%)

Query: 1663 SPAYSPTSPGYSPTSPSYSPTSPT------------YSPTSPSYNPQSAKYSPSLAYSPS 1710
            SP Y   +   S    S+SP +PT                    +P     SP   ++  
Sbjct: 1501 SPTYDGGTGIGSYDQVSFSPIAPTGGSGDVGGFTDYGGTYGGGLSPFDGGRSPGSGFTGM 1560

Query: 1711 SPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP-YNAGGGNPDYSPSSPQ 1769
            SP  +     SP SP +SPTS  YSPTSP  +  SP ++ +SP Y A   +P YSP+SP+
Sbjct: 1561 SPGFT-----SPVSPGFSPTSPGYSPTSPGIA--SPRFAATSPGYMASPTSPHYSPTSPR 1613

Query: 1770 YSPSAGYSPSAPGYSPSSTSQYTP 1793
            Y      SP++P YSP+S + Y+P
Sbjct: 1614 YG-----SPTSPSYSPTSPAGYSP 1632



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 30/109 (27%)

Query: 1708 SPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP-------------Y 1754
            SP     SP S ++  SP ++      SP SP +SP+SP YSP+SP             Y
Sbjct: 1545 SPFDGGRSPGSGFTGMSPGFT------SPVSPGFSPTSPGYSPTSPGIASPRFAATSPGY 1598

Query: 1755 NAGGGNPDYSPSSPQY----SPS------AGYSPSAPGYSPSSTSQYTP 1793
             A   +P YSP+SP+Y    SPS      AGYSP++P YSP+S + Y+P
Sbjct: 1599 MASPTSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPN-YSP 1646


>gi|413915242|gb|AFW21483.1| RNA polymerase II largest subunit [Claviceps fusiformis]
          Length = 1761

 Score = 1644 bits (4258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 876/1784 (49%), Positives = 1170/1784 (65%), Gaps = 141/1784 (7%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG++SP+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
             KC+TCT  M++CPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F  
Sbjct: 67   FKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            A+  R+ K R  ++   CK K +CE  D  +   ++   G +P+  N GGCG  QP++  
Sbjct: 127  AINTRDAKLRFNRVWTVCKKKRRCENEDRTEKNDEEFAPGMKPVVNNHGGCGNVQPQVRQ 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNPKY 238
              +++ A +         QE  P+   R++T  +T E   G+LKRIS+ED + +GLN  Y
Sbjct: 187  AALQLKAAFDVA------QEDGPK---RRETVPITPEMAHGILKRISEEDLRHMGLNSDY 237

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+W+I+ V             +      +R  DDLT++L  IIR N N+++  R G+P
Sbjct: 238  ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG   A
Sbjct: 358  DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR+++
Sbjct: 415  KYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRV 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL +VP  IVSPQ N P+MG
Sbjct: 475  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSPQKNGPLMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQD+L G  KI +RDTF++K++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ +++I
Sbjct: 535  IVQDSLAGAYKICRRDTFVDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVI 594

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            PK+I+L    +  A  D   +   DT + I+ GELL G L KK +G++ G ++H+ + E+
Sbjct: 595  PKEISLHSPESSGA-QDNADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP+ A  FL   Q +V YWLL N  SIGIGDT+ D +T+E +   I   K  V  L  QA
Sbjct: 654  GPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  +  +FENKV+  LN+ARD+AG++ Q+SL +SNN   M  +GSKGS IN
Sbjct: 714  TANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHA
Sbjct: 774  ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D++ 
Sbjct: 834  MAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLDAMC 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE Q L  LKM  + F+  +R ++    E +  +Y   EY ++L   KE  D+ D+E   
Sbjct: 894  IEKQKLGILKMSDAAFENKYRLDLANPPEWFKKDY---EYGNELAGDKESMDLLDSEWDA 950

Query: 944  LEADRYQL-ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            L +DR  +     +  G+ S  LP+N+ R+I  A++ F V     S++ P++V+  + KL
Sbjct: 951  LVSDRRAVRVINRSKMGEESMQLPLNIGRIIETAKRVFNVRATDRSNLRPVDVIPRIQKL 1010

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
               L VV G DP+S+EA  NAT+ F  L+RS  A K ++K HRL + AF+ V+GE+++R+
Sbjct: 1011 LNNLTVVRGSDPISIEADTNATILFKALIRSRLAFKEIVKVHRLNKLAFDHVLGELQNRW 1070

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             ++ V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK IKT
Sbjct: 1071 DRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIKT 1130

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS++V+L   +  T+E+AK ++  +EYT LRS+T  TE++YDPD  GT I ED++ V+SY
Sbjct: 1131 PSMAVYLNTHL-GTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIAEDMDMVESY 1189

Query: 1183 YEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            + +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+  DL  IF+D+NAD
Sbjct: 1190 FLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAVIFSDNNAD 1249

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            + ++RIR +  ++ K E  ++  EDDV LK++E+++L  + LRGV               
Sbjct: 1250 EQVIRIRTIRSDSDKDEEGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTRLV 1309

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                       L  V+  + VD  RT +N L +I+EV GIEA R
Sbjct: 1310 VDDDGSEIAKKDDDKCTQWYLDTSGSALREVLAVDGVDPTRTYTNDLWQIVEVFGIEAAR 1369

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSFEET
Sbjct: 1370 SALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSFEET 1429

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  ++L+ +ML+  I     +   GL
Sbjct: 1430 VEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPKMLETVIS---DNSRMGL 1486

Query: 1441 EFGMTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPG- 1497
              GM        G  TPY  G  SP    S  L ++      FSP  G  + +P      
Sbjct: 1487 MPGMPIKDGEAQGAATPYDTG--SPMSNDSGYLSMNSPAAGNFSPIQGAGSETPAGFGTE 1544

Query: 1498 ------------YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSP--GYSPTSPTYSPS 1543
                         SP +   + S    SPTSP +S    GYSPTSP  GYSPTSP     
Sbjct: 1545 YGGGGFGGGIGTMSPYAMRGATSPFSTSPTSP-FSAGMAGYSPTSPNAGYSPTSPLLDGG 1603

Query: 1544 SPGYSPTSPAYSPTSPS------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SY 1596
               Y+ +      +           PTSP+    SP+YSPTSPSYSPTSP    TSP  Y
Sbjct: 1604 VGRYASSPSFSPSSPSFSPTSPMLRPTSPA----SPNYSPTSPSYSPTSP----TSPRHY 1655

Query: 1597 SPTSPSY--SPTSPAYSPTSPAYSPTSPAYSPTSPS-----------YSPTSPSYSPTSP 1643
            SPTSP+   SPTSP YSP SP YSP SP       +              +  +YSPTSP
Sbjct: 1656 SPTSPAQFNSPTSPNYSPASPNYSPASPNLHGAGATSPSYSPASPSWSPTSPEAYSPTSP 1715

Query: 1644 SY--------SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
            S+        SPTSPSYSPTSP++SP +P    +   YSP SPS
Sbjct: 1716 SFQRSPGNQQSPTSPSYSPTSPAFSPRTPGPGNSGNQYSPNSPS 1759



 Score = 89.4 bits (220), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/226 (39%), Positives = 110/226 (48%), Gaps = 37/226 (16%)

Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP--SYSPTSP-SYSPTSPSYS 1660
            SP +  +SP   A S T PA   T              SP      TSP S SPTSP +S
Sbjct: 1521 SPAAGNFSPIQGAGSET-PAGFGTEYGGGGFGGGIGTMSPYAMRGATSPFSTSPTSP-FS 1578

Query: 1661 PTSPAYSPTSP--GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY---SPSSPRLS 1715
                 YSPTSP  GYSPTSP        Y+ +        +    S      SP+SP  S
Sbjct: 1579 AGMAGYSPTSPNAGYSPTSPLLDGGVGRYASSPSFSPSSPSFSPTSPMLRPTSPASPNYS 1638

Query: 1716 PASP-YSPTSP----NYSPTSSSY--SPTSPSYSPSSPTYSPSSPYNAGGG--------- 1759
            P SP YSPTSP    +YSPTS +   SPTSP+YSP+SP YSP+SP   G G         
Sbjct: 1639 PTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPNYSPASPNYSPASPNLHGAGATSPSYSPA 1698

Query: 1760 --------NPDYSPSSP--QYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
                       YSP+SP  Q SP    SP++P YSP+S + ++P+T
Sbjct: 1699 SPSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPA-FSPRT 1743


>gi|451994492|gb|EMD86962.1| hypothetical protein COCHEDRAFT_1217961 [Cochliobolus heterostrophus
            C5]
          Length = 1737

 Score = 1644 bits (4257), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 886/1760 (50%), Positives = 1181/1760 (67%), Gaps = 143/1760 (8%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ +QFG+LSP+EI+ MSVV I + ET   ++ KP+  GL+DP+LGTIDR   C TC  +
Sbjct: 16   IKEIQFGLLSPEEIKAMSVVHIIYPETMDEQKQKPREQGLNDPKLGTIDRMYSCATCKED 75

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKN 132
            +  CPGHFGH+EL  P+FH+GF+  +  ++ +VC  C  I AD +   ++ A + ++ K 
Sbjct: 76   IQVCPGHFGHIELHTPVFHVGFVVKIKKLLETVCHTCGMIKADFNHPDWQAAARTKDAKK 135

Query: 133  RLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPK-LTIEGMKM 185
            R  KI    + K  C          QD EE  K+NK      GGCG++QP  +  EG+K+
Sbjct: 136  RFDKIWRMSRTKNVCV---------QDVEESGKENKIPKIPHGGCGSRQPDTIRKEGLKL 186

Query: 186  IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
               +K  +K +DD +      +RK+ +T ++   + K +SD    LLGLN  YARP+WMI
Sbjct: 187  TGTWKQSKKDDDDGQG-----DRKEVITPKQAQTIFKLLSDNTLALLGLNADYARPEWMI 241

Query: 246  LQVLPIPPPP-------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
            L VLP+PPPP             +R  DDLT++L  IIR N+ +   ++ G+P H+ +EF
Sbjct: 242  LDVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANQRVAECQQEGSPQHVTAEF 301

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
              L+Q+H+ATY DN+  G P+A Q+SGRP+K+I  RLK KEGR+RGNLMGKRVDFSARTV
Sbjct: 302  EALVQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDFSARTV 361

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
            IT DP +++DQ+GVP SIA  LTYPE VT +NI +L  LV  GP+  PG   A Y+I+ D
Sbjct: 362  ITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTNLVRNGPNQHPG---ANYVIKAD 418

Query: 413  GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
            G RLDL++ K   D  L+ G+KVERH++D D ++FNRQPSLHK S+MGHR+K+MPYSTFR
Sbjct: 419  GVRLDLKHNKNLDDLRLQYGWKVERHIDDDDVIIFNRQPSLHKESMMGHRVKVMPYSTFR 478

Query: 473  LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
            LNLSVTSPYNADFDGDEMN+HVPQS ETRAE+  L MVPK IVSPQ N+P+MGIVQDTLL
Sbjct: 479  LNLSVTSPYNADFDGDEMNLHVPQSDETRAEIQNLCMVPKQIVSPQKNQPLMGIVQDTLL 538

Query: 533  GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
            G  K+T+RD FI  +  M I+MW  D+DG +P+P ILKPRPLWTGKQ+ ++  P+++N+ 
Sbjct: 539  GVYKMTRRDNFIPIEQVMPIMMWVPDWDGILPEPAILKPRPLWTGKQIVSMAFPREVNIE 598

Query: 593  RT---AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
            +    +    DND       D  + I+ G+L+ G + KK +G S G +IH+++ E+G DA
Sbjct: 599  KKEDDSTPSKDND-----IKDKSLMIKGGQLIYGQVTKKIVGASAGGVIHIVFNELGSDA 653

Query: 650  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
            A KF    Q + N+WLL   FS G+GDTI D  T E I   ISK+K  V+++I  A    
Sbjct: 654  AVKFFNSCQRICNWWLLHYGFSFGVGDTIPDPGTSEKIASEISKSKVKVEDIIATATKDQ 713

Query: 710  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
            LEP PG T+  +FE+KV + LN  R+  G++AQ SL + NN+   V +GSKGS +NISQM
Sbjct: 714  LEPLPGMTIRGTFESKVQKFLNEGREGGGTAAQNSLKDFNNVVQTVVSGSKGSTVNISQM 773

Query: 770  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
             A VGQQ VEG+RIP+GF  RTLPHF+KDDY PESRGFVENSYLRGLTP EFFFHAM GR
Sbjct: 774  VALVGQQAVEGQRIPYGFKYRTLPHFSKDDYSPESRGFVENSYLRGLTPSEFFFHAMAGR 833

Query: 830  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
            EGLIDTAVKT+ETGYIQRRLVKA+ED+MVKYDGTVRNS+GD+++F+YGEDG+D   IE Q
Sbjct: 834  EGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSMGDIVEFIYGEDGLDGAHIEKQ 893

Query: 890  TLDSLKMKKSEFDKAFRFEM--DEENWNPNYMLQE---YIDDLKTIKELRDVFDAEVQKL 944
            ++D +   +  F+ A++ ++   ++   P + L+    +  D+    +++   D E + +
Sbjct: 894  SMDIIMSSEPAFEAAYKLDVLTTDQPEIPVWKLESSPLFQGDV----DVQRALDEEFEAI 949

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRR-PSDMHPMEVVEAVDKLQ 1003
            + DR  L    +     ++ LP+N+ R+I +AQ  F ++P +  S++HP+E ++ V +  
Sbjct: 950  KNDREYLRANASEDDLETFQLPLNIARMIRSAQARFGINPEKAASNLHPIETIKQVRETL 1009

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
            +RL V+ G D LS EAQ +AT  F   LR+  A K++  EHRL +EA  +V+GE+E RFL
Sbjct: 1010 DRLVVIRGTDELSREAQDSATYLFKAHLRARLAFKKLAVEHRLNKEALSYVLGELEDRFL 1069

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            ++ VAPGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+A  IKTP
Sbjct: 1070 KAAVAPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNIAANIKTP 1129

Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
            S+ V  +    +++++AK ++  +E TTLRS+T+A E++YDPD   T++E+D + V+SY+
Sbjct: 1130 SMLV-RQADSKASQQQAKLLRSTIELTTLRSLTQAVELYYDPDIQSTLVEDDQDMVESYF 1188

Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
             +P+ED   E  S WLLRI L+R+ ++DK +++  VA KI +EF  +L  IF+D+NAD+ 
Sbjct: 1189 ILPEEDEVIESQSKWLLRIILDRKKLLDKSITIGEVAGKIKEEFKPNLAVIFSDENADEQ 1248

Query: 1244 ILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV----------------- 1286
            ++R+R + D+  + +  DE   D+ +++K+E ++L ++ LRGV                 
Sbjct: 1249 VMRVRFIWDQNLQKDDEDEDERDERWMRKLEKHLLDDVTLRGVRGVERAFIREHTVTVEK 1308

Query: 1287 ------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                    +L  V+  E VDA +T SN  IEI+ VLGIEA R  
Sbjct: 1309 EDRSLMHSKNNDLCKEWVLDTTGTSLAEVLAIEGVDATKTYSNSFIEILGVLGIEAARAG 1368

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            LL EL +V+SFDGSYVN+RH+A+L D M  RG LMAITRHGINRNDTG +MRCSFEETV+
Sbjct: 1369 LLKELGMVLSFDGSYVNHRHMALLVDIMCQRGLLMAITRHGINRNDTGALMRCSFEETVE 1428

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEF 1442
            ILL+AA F E D  RGV+ENIMLGQLAP+GTG+  + +++ ML   +E    S   G   
Sbjct: 1429 ILLEAAGFGELDDCRGVSENIMLGQLAPMGTGEFDVVMDNAMLLTMVEDN--SKAMGAAA 1486

Query: 1443 G---MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGM---------AF 1490
            G   +  A +P   +P +D  +S G         SP+  A  S   GG            
Sbjct: 1487 GNYVVGGADTPYLNSPTYD--VSIGMGSYDQASFSPMAAAGGSGDTGGFTDYGGTYGGGL 1544

Query: 1491 SPTSSPGYSPSSPGYSPSSPGY-SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY-- 1547
            SP    G SP S G++  SPG+ SP SPG+SPTSPGYSPTSPG +  SP ++ +SPGY  
Sbjct: 1545 SPFDG-GRSPGS-GFTGMSPGFTSPVSPGFSPTSPGYSPTSPGIA--SPRFAATSPGYMA 1600

Query: 1548 SPTSPAYSPTSPSY-SPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSY--SPTSPSY 1603
            SPTSP YSPTSP Y SPTSPSYSPTSP+ YSPTSP YSPTSP+YSPTSP++    TSP+Y
Sbjct: 1601 SPTSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPNYSPTSPTFMGGATSPAY 1660

Query: 1604 SPTSPAYSPTSPAYSPTSPAY----------SPTSPSYSPTSPSYSPTSP--SYSPTSPS 1651
            SPTSP YSPTSP YSPTSP Y          SPTSP YSPTSP YSPTSP  ++SPTSP 
Sbjct: 1661 SPTSPQYSPTSPQYSPTSPQYQAGSDRRSPTSPTSPQYSPTSPRYSPTSPAGAFSPTSPR 1720

Query: 1652 YSPTSPSYSPTSPAYSPTSP 1671
            YSPTSP      PAYSPTSP
Sbjct: 1721 YSPTSP-----GPAYSPTSP 1735



 Score = 62.8 bits (151), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 13/100 (13%)

Query: 1695 NPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP- 1753
            +P     SP   ++  SP  +     SP SP +SPTS  YSPTSP  +  SP ++ +SP 
Sbjct: 1545 SPFDGGRSPGSGFTGMSPGFT-----SPVSPGFSPTSPGYSPTSPGIA--SPRFAATSPG 1597

Query: 1754 YNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
            Y A   +P YSP+SP+Y      SP++P YSP+S + Y+P
Sbjct: 1598 YMASPTSPHYSPTSPRYG-----SPTSPSYSPTSPAGYSP 1632



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 59/109 (54%), Gaps = 30/109 (27%)

Query: 1708 SPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP-------------Y 1754
            SP     SP S ++  SP ++      SP SP +SP+SP YSP+SP             Y
Sbjct: 1545 SPFDGGRSPGSGFTGMSPGFT------SPVSPGFSPTSPGYSPTSPGIASPRFAATSPGY 1598

Query: 1755 NAGGGNPDYSPSSPQY----SPS------AGYSPSAPGYSPSSTSQYTP 1793
             A   +P YSP+SP+Y    SPS      AGYSP++P YSP+S + Y+P
Sbjct: 1599 MASPTSPHYSPTSPRYGSPTSPSYSPTSPAGYSPTSPQYSPTSPN-YSP 1646


>gi|413915246|gb|AFW21485.1| RNA polymerase II largest subunit [Claviceps purpurea]
          Length = 1756

 Score = 1644 bits (4256), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 882/1780 (49%), Positives = 1167/1780 (65%), Gaps = 150/1780 (8%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG++SP+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLMSPEEIKSMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
            +KC+TCT  M++CPGHFGH+ELAKP++H GF++ V  I+  VC NCSK+  D  D +F  
Sbjct: 67   LKCKTCTQTMSDCPGHFGHIELAKPVYHPGFIRKVKKILEMVCHNCSKLRVDASDAEFAS 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-----EPLKKNKGGCGAQQPKL 178
            A+ IR+ K R  ++   CK KTKCE  D  D    D +     +P+  N GGCG  QP++
Sbjct: 127  AINIRDAKARFNRVWALCKTKTKCENEDRSDKNDDDFDFLPVKKPVITNHGGCGNVQPQV 186

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNP 236
                +++ A ++ +      QE  P+   RK+T  +T E  LG+LKRIS++D + +GLN 
Sbjct: 187  RQAALQLKAVFELE------QEDGPK---RKETTPITPETALGILKRISEQDLRHMGLNA 237

Query: 237  KYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNG 283
             YARP+W+I+ V             +      +R  DDLT++L  IIR N N+++  R G
Sbjct: 238  DYARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREG 297

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGK 343
            +P HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGK
Sbjct: 298  SPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGK 357

Query: 344  RVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKT 403
            RVDFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI RL +LVE GP+  PG  
Sbjct: 358  RVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGRLHQLVENGPNEHPG-- 415

Query: 404  GAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
             AKY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGH++
Sbjct: 416  -AKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHQV 474

Query: 464  KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
            ++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL +VP  IVSPQ N P+
Sbjct: 475  RVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSPQKNGPL 534

Query: 524  MGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNL 583
            MGIVQD+L G  K+ +RDTFIEK++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ ++
Sbjct: 535  MGIVQDSLAGAYKMCRRDTFIEKEMVMNLMLWVPNWDGVIPQPAILKPRPRWTGKQIISM 594

Query: 584  IIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            +IPK+I+L    +  A  D   +   DT + I+ GELL G L KK +G++ G ++H+ + 
Sbjct: 595  VIPKEISLNSPESADA-LDNADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYN 653

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
            E+GP+ A  FL   Q +V YWLL N  SIGIGDT+ D +T+E +   I   K  V  L  
Sbjct: 654  ELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQAHIDTQKAEVARLTA 713

Query: 704  QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
            QA    LE  PG  +  +FENKV+  LN+ARD+AG++ Q+SL +SNN   M  +GSKGS 
Sbjct: 714  QATANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSS 773

Query: 764  INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
            INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFF
Sbjct: 774  INISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFF 833

Query: 824  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
            HAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGDV+QFLYGEDG+D+
Sbjct: 834  HAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSAQYDGTVRNSLGDVVQFLYGEDGLDA 893

Query: 884  VWIESQTLDSLKMKKSEFDKAFRFEM-DEENW-NPNYMLQEYIDDLKTIKELRDVFDAEV 941
            + IE Q+L  LKM  + F+  FR ++ +  NW   +Y   EY ++L   KE  D+ D E 
Sbjct: 894  MCIEKQSLGILKMSDAAFENKFRLDLANPPNWFKKDY---EYGNELAGDKESMDLLDTEW 950

Query: 942  QKLEADRYQL-ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
              L +DR  +     +  G+    LP+N+ R+I  A++ F V     S++ P++V+  V 
Sbjct: 951  DALLSDRRVVRVINRSKMGEEMMQLPLNIGRMIETAKRVFNVRATDRSNLRPVDVIPQVQ 1010

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L   + +V G DP+SVEA  NAT+    L+RS  A K ++K HRL + AF+ V+GE+ +
Sbjct: 1011 NLLNNMTIVRGSDPISVEADTNATILMKALVRSRLAFKEIVKVHRLNKLAFDHVLGELHN 1070

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            R+ +S ++PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK I
Sbjct: 1071 RWARSFISPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDI 1130

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            KTPS++V+L   +  T+E+AK ++  +E+T LRS+T  TE++YDPD  GT I ED++ V+
Sbjct: 1131 KTPSMAVYLNTHL-GTQEQAKKLRSLVEFTNLRSITAVTEIYYDPDIQGTTIVEDMDMVE 1189

Query: 1181 SYYEMPD--EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDD 1238
            SY+ +PD  +D   E+ S WLLRI L+R+ ++DK++ +  VA++I +EF  DL  I++D+
Sbjct: 1190 SYFLIPDDSQDTIEEQ-SRWLLRITLDRQKLLDKEIKIDDVAQRIKEEFKHDLAIIYSDN 1248

Query: 1239 NADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------------ 1286
            NAD+ ++RIR +  +  K E  + + EDDV LK++ES++L  + LRGV            
Sbjct: 1249 NADEQVIRIRTVGSDKVKDEEGNMNIEDDVMLKRLESHILDTLTLRGVRGVERAFLTKGT 1308

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                         +L  V+    VD  RT +N L +I+EV GIE
Sbjct: 1309 RLVIDDDGSELAKKDDEKCTQWYLDTSGSSLREVLSVNGVDPTRTYTNDLWQIVEVFGIE 1368

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            A R AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSF
Sbjct: 1369 AARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGIISAVTRHGINRADTGALMRCSF 1428

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM 1437
            EETV+ILL+AA   E D  RG++ENIMLGQLAP+GTG   +YL+ +ML+  I     +  
Sbjct: 1429 EETVEILLEAAASGELDDCRGISENIMLGQLAPMGTGSFDVYLDPKMLETVIS---DNSR 1485

Query: 1438 EGLEFGMTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSS 1495
             GL  GM        G  TPY  G  SP  L S  + LS      FSP  G  + +P   
Sbjct: 1486 MGLMPGMPIKEGEAQGAATPYDTG--SPMSLDSGYMSLSSPAAGNFSPIQGAGSETPAGF 1543

Query: 1496 PGYSPSSPGYSPSSPGYSP------TSP-GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1548
                        +    SP      TSP   SPTSP +S    GYSP+SP     + GYS
Sbjct: 1544 GTEYGGGGFGGGAIGTMSPYAMRGATSPFSTSPTSP-FSAGMAGYSPSSP-----NAGYS 1597

Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPS------YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
            PTSP        Y+ +      +           PTSP+    SP+YSPTSPSYSPTSP 
Sbjct: 1598 PTSPLLDGGVGRYASSPSFSPSSPSFSPTSPMLRPTSPA----SPNYSPTSPSYSPTSP- 1652

Query: 1603 YSPTSP-AYSPTSPAY--SPTSPAYSPTSPSYSPTSPSY-------------------SP 1640
               TSP  YSPTSPA   SPTSP YSP SP+YSP SP+                      
Sbjct: 1653 ---TSPRHYSPTSPAQFNSPTSPNYSPASPNYSPASPNLHGGAGPTSPSYSPASPSWSPT 1709

Query: 1641 TSPSYSPTSPSY--------SPTSPSYSPTSPAYSPTSPG 1672
            +  +YSPTSPS+        SPTSPSYSPTSPA+SP +PG
Sbjct: 1710 SPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPAFSPRTPG 1749



 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 100/275 (36%), Positives = 124/275 (45%), Gaps = 59/275 (21%)

Query: 1518 GYSPTSPGYSPTSPGYSPTSPTYSPSS--PGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1575
            G  P  P     + G +    T SP S   GY   S   SP + ++SP   + S T   +
Sbjct: 1487 GLMPGMPIKEGEAQGAATPYDTGSPMSLDSGYMSLS---SPAAGNFSPIQGAGSETPAGF 1543

Query: 1576 SPTSPSYSPTSPSYSPTSP--SYSPTSP-SYSPTSPAYSPTSPAYSPTSP--AYSPTSPS 1630
                        +    SP      TSP S SPTSP +S     YSP+SP   YSPTSP 
Sbjct: 1544 GTEYGGGGFGGGAIGTMSPYAMRGATSPFSTSPTSP-FSAGMAGYSPSSPNAGYSPTSPL 1602

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT---- 1686
                   Y+ +      +      +     PTSPA    SP YSPTSPSYSPTSPT    
Sbjct: 1603 LDGGVGRYASSPSFSPSSPSFSPTSP-MLRPTSPA----SPNYSPTSPSYSPTSPTSPRH 1657

Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSS------------- 1732
            YSPTSP      A+++     SP+SP  SPASP YSP SPN    +              
Sbjct: 1658 YSPTSP------AQFN-----SPTSPNYSPASPNYSPASPNLHGGAGPTSPSYSPASPSW 1706

Query: 1733 ------SYSPTSPSY--------SPSSPTYSPSSP 1753
                  +YSPTSPS+        SP+SP+YSP+SP
Sbjct: 1707 SPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSP 1741



 Score = 90.9 bits (224), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 92/248 (37%), Positives = 116/248 (46%), Gaps = 65/248 (26%)

Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYS---PTSP-SYSPTSPSY 1645
            SP + ++SP   + S T PA   T             T   Y+    TSP S SPTSP +
Sbjct: 1523 SPAAGNFSPIQGAGSET-PAGFGTEYGGGGFGGGAIGTMSPYAMRGATSPFSTSPTSP-F 1580

Query: 1646 SPTSPSYSPTSPS--YSPTSPAYSPTSPGYSPTSPSY----------------SPTSPTY 1687
            S     YSP+SP+  YSPTSP        Y+ +                    SP SP Y
Sbjct: 1581 SAGMAGYSPSSPNAGYSPTSPLLDGGVGRYASSPSFSPSSPSFSPTSPMLRPTSPASPNY 1640

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPT 1747
            SPTSPSY+P S          P+SPR      YSPTSP     +   SPTSP+YSP+SP 
Sbjct: 1641 SPTSPSYSPTS----------PTSPR-----HYSPTSP-----AQFNSPTSPNYSPASPN 1680

Query: 1748 YSPSSPYNAGGGNPD------------------YSPSSP--QYSPSAGYSPSAPGYSPSS 1787
            YSP+SP   GG  P                   YSP+SP  Q SP    SP++P YSP+S
Sbjct: 1681 YSPASPNLHGGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTS 1740

Query: 1788 TSQYTPQT 1795
             + ++P+T
Sbjct: 1741 PA-FSPRT 1747


>gi|413915228|gb|AFW21476.1| RNA polymerase II largest subunit [Epichloe festucae]
          Length = 1756

 Score = 1640 bits (4246), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 875/1770 (49%), Positives = 1167/1770 (65%), Gaps = 167/1770 (9%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG++SP+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
            +KC+TCT  M++CPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F  
Sbjct: 67   LKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            A++ R+ K R  ++   CK K +CE  D  +   ++   G +PL  N GGCG  QP++  
Sbjct: 127  AIQTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKPLVNNHGGCGNVQPQVRQ 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNPKY 238
              +++ A +         QE  P+   R++T  +T E   G+LKRIS+ED + +GLN  Y
Sbjct: 187  AALQLKAAFDVV------QEDGPK---RRETVPITPEMAHGILKRISEEDLRQMGLNSDY 237

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+W+I+ V             +      +R  DDLT++L  IIR N N+++  R G+P
Sbjct: 238  ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG   A
Sbjct: 358  DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR+++
Sbjct: 415  KYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRV 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N P+MG
Sbjct: 475  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGPLMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            +VQD+L G  K+ +RDTFI+K++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ +++I
Sbjct: 535  VVQDSLAGAYKLCRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVI 594

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            PK+I+L    +     D   +   DT + I+ GELL G L KK +G++ G ++H+ + E+
Sbjct: 595  PKEISLHSPES-SGGQDNADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP+ A  FL   Q +V YWLL N  SIGIGDT+ D +T+E +   I   K  V  L  QA
Sbjct: 654  GPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  +  +FENKV+  LN+ARD+AG++ Q+SL +SNN   M  +GSKGS IN
Sbjct: 714  TANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHA
Sbjct: 774  ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D++ 
Sbjct: 834  MAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLDAMC 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEM-DEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE Q L  LKM  + F+  +R ++ +  +W   +Y   EY ++L   KE  D+ D+E   
Sbjct: 894  IEKQKLGILKMSDAAFETKYRLDLANPPDWFKKDY---EYGNELAGDKESMDLLDSEWDH 950

Query: 944  LEADRYQLATEIATS-GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            L  DR  +     T  G+    LP+N+ R+I  A++ F V     S++ P +V+  +  L
Sbjct: 951  LLNDRRIVRLINRTKMGEEMMQLPLNIGRIIETAKRVFNVRATDRSNLRPADVIPRIQNL 1010

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
               LK+V G DP+S+EA ++AT+ F  L+RS  A K ++K HRL + AF+ V+GE+++R+
Sbjct: 1011 LSDLKIVRGSDPISIEADESATILFKALIRSRLAFKEIVKVHRLNKLAFDHVLGELQNRW 1070

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             +S V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK IKT
Sbjct: 1071 DRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIKT 1130

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS++V+L   +  T+E+AK ++  +EYT LRS+T  TE++YDPD  GT I ED++ V+SY
Sbjct: 1131 PSMAVYLNTHL-GTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVESY 1189

Query: 1183 YEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            + +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+  DL  IF+D+NAD
Sbjct: 1190 FLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDNNAD 1249

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            + ++RIR +  +  K E  ++  EDDV LK++E+++L  + LRGV               
Sbjct: 1250 EQVIRIRTIRTDNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTRLV 1309

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                       L  V+  + VD  RT +N L +I+EV GIEA R
Sbjct: 1310 VDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIEAAR 1369

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSFEET
Sbjct: 1370 SALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSFEET 1429

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  ++L+ +ML+  I     +   GL
Sbjct: 1430 VEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPKMLETVIS---DNSRMGL 1486

Query: 1441 EFGMTPARSPVSG--TPYHDGM-MS--PGYL---------FSPNLRLSPVTDAQFSPYVG 1486
              GM        G  TPY  G  MS   GY+         FSP       T A F+    
Sbjct: 1487 MPGMPVKEGEAEGAATPYDTGSPMSNDSGYMSISSPAAGNFSPIQGAGSETQAGFNTEYD 1546

Query: 1487 GMA-FSPTSSPGYSPSSP-GYSPSSPGYSPTSPGYSPTSP--GYSPTSPGYSPTSPTY-- 1540
            G+A  SP S  G  P+SP   SP+SP  +  + GYSP+SP  GYSPTSP     +  Y  
Sbjct: 1547 GIAPISPYSMRG--PTSPFSTSPTSPFGAGMAAGYSPSSPNAGYSPTSPLLDGGAGRYAT 1604

Query: 1541 ---------------------SPSSPGYSPTSPAYSPTSPS----YSPTSPSY--SPTSP 1573
                                 SP+SP YSPTSP+YSPTSP+    YSPTSP+   SPTSP
Sbjct: 1605 SPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSP 1664

Query: 1574 SYSPTSPSYSPTSP-------------------------SYSPTSPSY--------SPTS 1600
            SYSP SP+YSP SP                         +YSPTSPS+        SPTS
Sbjct: 1665 SYSPASPNYSPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTS 1724

Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
            PSYSPTSPA+SP +P    +   YSP SPS
Sbjct: 1725 PSYSPTSPAFSPRTPGPGNSGNQYSPNSPS 1754



 Score =  115 bits (289), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/251 (41%), Positives = 127/251 (50%), Gaps = 62/251 (24%)

Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---PTSP-SYSPTSPAYSPTSPAY 1617
            SP + ++SP   + S T   ++      +P SP YS   PTSP S SPTSP  +  +  Y
Sbjct: 1521 SPAAGNFSPIQGAGSETQAGFNTEYDGIAPISP-YSMRGPTSPFSTSPTSPFGAGMAAGY 1579

Query: 1618 SPTSP--AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSP 1675
            SP+SP   YSPTSP     +  Y+ +      +      +     PTSPA    SP YSP
Sbjct: 1580 SPSSPNAGYSPTSPLLDGGAGRYATSPSFSPSSPSFSPTSP-MLRPTSPA----SPNYSP 1634

Query: 1676 TSPSYSPTSPT----YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPN---- 1726
            TSPSYSPTSPT    YSPTSP      A+++     SP+SP  SPASP YSP SPN    
Sbjct: 1635 TSPSYSPTSPTSPRHYSPTSP------AQFN-----SPTSPSYSPASPNYSPASPNLHGA 1683

Query: 1727 ---------------------YSPTSSSY--------SPTSPSYSPSSPTYSPSSPYNAG 1757
                                 YSPTS S+        SPTSPSYSP+SP +SP +P    
Sbjct: 1684 GPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPAFSPRTPGPGN 1743

Query: 1758 GGNPDYSPSSP 1768
             GN  YSP+SP
Sbjct: 1744 SGN-QYSPNSP 1753



 Score = 87.0 bits (214), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 82/214 (38%), Positives = 108/214 (50%), Gaps = 50/214 (23%)

Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS---PTSP-SYSPTSPAYSPTSPGY 1673
            SP +  +SP   + S T   ++      +P SP YS   PTSP S SPTSP  +  + GY
Sbjct: 1521 SPAAGNFSPIQGAGSETQAGFNTEYDGIAPISP-YSMRGPTSPFSTSPTSPFGAGMAAGY 1579

Query: 1674 SPTSPS--YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS 1731
            SP+SP+  YSPTSP     +  Y    +    S ++SP+SP L P SP    SPNYSPTS
Sbjct: 1580 SPSSPNAGYSPTSPLLDGGAGRYATSPSFSPSSPSFSPTSPMLRPTSP---ASPNYSPTS 1636

Query: 1732 SSYSPTSPS----YSPSSPTY--SPSSPYNAGGGNPDYSPSSPQYSPSA----------- 1774
             SYSPTSP+    YSP+SP    SP+SP         YSP+SP YSP++           
Sbjct: 1637 PSYSPTSPTSPRHYSPTSPAQFNSPTSP--------SYSPASPNYSPASPNLHGAGPTSP 1688

Query: 1775 ---------------GYSPSAPGYSPSSTSQYTP 1793
                            YSP++P +  S  +Q +P
Sbjct: 1689 SYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSP 1722


>gi|413915240|gb|AFW21482.1| RNA polymerase II largest subunit [Balansia obtecta]
          Length = 1760

 Score = 1638 bits (4241), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 878/1776 (49%), Positives = 1157/1776 (65%), Gaps = 182/1776 (10%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG+LSP+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLLSPEEIKNMSVCHILYPETMDESRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
             KC+TCT  M++CPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F  
Sbjct: 67   FKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            A+  R+ K R  ++   CK K +CE  D  +   ++   G +P+  N GGCG  QP++  
Sbjct: 127  AINTRDAKLRFNRVWAVCKKKRRCENEDRSEKNDEEFSPGMKPMVNNHGGCGNVQPQVRQ 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNPKY 238
              +++ A +         QE  P+   R++T  +T E   G+L+RIS+ED Q +GLN  Y
Sbjct: 187  AALQLKAAFDVV------QEDGPK---RRETVPITPEMAHGILRRISEEDLQHMGLNSDY 237

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+WMI+ V             +      +R  DDLT++L  IIR N N+++  R G+P
Sbjct: 238  ARPEWMIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI RL +LVE GP+  PG   A
Sbjct: 358  DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGRLHQLVENGPNEHPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY++R DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR+++
Sbjct: 415  KYVLRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRV 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL +VP  IVSPQ N P+MG
Sbjct: 475  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVRELCLVPNNIVSPQKNGPLMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQD+L G  KI +RDTFI+K++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ +++I
Sbjct: 535  IVQDSLAGAYKICRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVI 594

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            PK+I+L    +     D   +   DT + I+ GELL G L KK +G++ G ++H+ + E+
Sbjct: 595  PKEISLHSPES-SGGQDNADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GPD A  FL   Q +V YWLL N  SIGIGDT+ D +T+E +   I   K  V  L  QA
Sbjct: 654  GPDGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  +  +FENKV+  LN+ARD+AG++ Q+SL +SNN   M  +GSKGS IN
Sbjct: 714  TANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHA
Sbjct: 774  ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D++ 
Sbjct: 834  MAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLDAMC 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEM-DEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE Q L  LKM  + F+K +R ++ +  +W   +Y   EY ++L   KE  D+ D+E   
Sbjct: 894  IEKQKLGILKMSDAAFEKKYRLDLANPPDWFKKDY---EYGNELAGDKESMDLLDSEWDA 950

Query: 944  LEADRYQL-ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            L  DR  +     A  G+    LP+N+ R+I  A++ F V     S++ P++V+  V  L
Sbjct: 951  LLEDRRTVRIINQAKMGEEMMQLPLNIGRMIETAKRVFNVRATDRSNLRPVDVIPRVQSL 1010

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
               LK+V G DP+S+EA  NAT+ F  L+RS  A K ++K HRL + AF+ V+GE+++R+
Sbjct: 1011 LNDLKIVRGADPISIEADSNATILFKALIRSRLAFKEIVKVHRLNKLAFDHVLGELQNRW 1070

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             +S V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK IKT
Sbjct: 1071 DRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIKT 1130

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS++V+L   +  T+E+AK ++  +EYT LRS+T  TE++YDPD  GT I ED++ V+SY
Sbjct: 1131 PSMAVYLNTHL-GTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTNIAEDMDMVESY 1189

Query: 1183 YEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            + +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+ +DL  IF+D+NAD
Sbjct: 1190 FLIPDDSQDTIDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPNDLAVIFSDNNAD 1249

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            + ++RIR +  E  K E  ++  EDDV LK++E+++L  + LRGV               
Sbjct: 1250 EQVIRIRTIRTEDEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTRLV 1309

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                       L  V+  E VD  RT +N L +I+EV GIEA R
Sbjct: 1310 IDDDGSEIAKKDSDKCTQWYLDTSGSALRDVLAVEGVDPTRTYTNDLWQIVEVFGIEAAR 1369

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSFEET
Sbjct: 1370 SALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSFEET 1429

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  +YL+ +ML+  I     +   GL
Sbjct: 1430 VEILLEAAATGELDDCRGISENVMLGQLAPMGTGNFDVYLDPKMLETVIS---DNSRMGL 1486

Query: 1441 EFGMTPARSPVSG--TPYHDGM-MS--PGYL---------FSPNLRLSPVTDA------- 1479
              GM        G  TPY  G  MS   GY+         FSP       T A       
Sbjct: 1487 MPGMPVKDGEAEGAATPYDTGSPMSNDSGYMTMNSPAAGNFSPIQGAGSETPAGFGTEYG 1546

Query: 1480 --------QFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSP--GYSPTSPGY--- 1526
                      SPY    A SP S+   SP+SP +     GYSPTSP  GYSPTSP     
Sbjct: 1547 GGGFGGIGSMSPYAMRGATSPFST---SPTSP-FGAGMAGYSPTSPSAGYSPTSPLLDGG 1602

Query: 1527 ---------------------------SPTSPGYSPTSPTYSPSSP----GYSPTSPAY- 1554
                                       SP SP YSPTSP+YSP+SP     YSPTSPA  
Sbjct: 1603 PGRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQF 1662

Query: 1555 -SPTSPSYSPTSPSYSPTSP-------------------------SYSPTSPSYSPT-SP 1587
             SPTSP+YSP SP+YSP SP                         +YSPTSPS+  +   
Sbjct: 1663 NSPTSPNYSPASPNYSPASPNLHGAGATSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGN 1722

Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
              SPTSPSYSPTSP++SP +P        YSP SP+
Sbjct: 1723 QQSPTSPSYSPTSPAFSPRTPGPGNPGNQYSPNSPS 1758



 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/241 (37%), Positives = 111/241 (46%), Gaps = 73/241 (30%)

Query: 1597 SPTSPSYSPTSPAYSPT-SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1655
            SP + ++SP   A S T +   +           S SP +   + +  S SPTSP +   
Sbjct: 1521 SPAAGNFSPIQGAGSETPAGFGTEYGGGGFGGIGSMSPYAMRGATSPFSTSPTSP-FGAG 1579

Query: 1656 SPSYSPTSPA--YSPTSPGY------------------------------SPTSPSYSPT 1683
               YSPTSP+  YSPTSP                                SP SP+YSPT
Sbjct: 1580 MAGYSPTSPSAGYSPTSPLLDGGPGRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPT 1639

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPN---------------- 1726
            SP+YSPTSP+     +  SP+   SP+SP  SPASP YSP SPN                
Sbjct: 1640 SPSYSPTSPTSPRHYSPTSPAQFNSPTSPNYSPASPNYSPASPNLHGAGATSPSYSPASP 1699

Query: 1727 ---------YSPTSSSY--------SPTSPSYSPSSPTYSPSSPYNAGGGNP--DYSPSS 1767
                     YSPTS S+        SPTSPSYSP+SP +SP +P   G GNP   YSP+S
Sbjct: 1700 SWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPAFSPRTP---GPGNPGNQYSPNS 1756

Query: 1768 P 1768
            P
Sbjct: 1757 P 1757



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/179 (41%), Positives = 93/179 (51%), Gaps = 60/179 (33%)

Query: 1676 TSP-SYSPTSP------TYSPTSPS--YNPQS-------AKYSPSLAY------------ 1707
            TSP S SPTSP       YSPTSPS  Y+P S        +Y+ S ++            
Sbjct: 1565 TSPFSTSPTSPFGAGMAGYSPTSPSAGYSPTSPLLDGGPGRYATSPSFSPSSPSFSPTSP 1624

Query: 1708 -----SPSSPRLSPASP-YSPTSP----NYSPTSSSY--SPTSPSYSPSSPTYSPSSPYN 1755
                 SP+SP  SP SP YSPTSP    +YSPTS +   SPTSP+YSP+SP YSP+SP  
Sbjct: 1625 MLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPNYSPASPNYSPASPNL 1684

Query: 1756 AGGG-----------------NPDYSPSSP--QYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
             G G                    YSP+SP  Q SP    SP++P YSP+S + ++P+T
Sbjct: 1685 HGAGATSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPA-FSPRT 1742


>gi|308198333|ref|XP_001386996.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
            subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
 gi|149388976|gb|EAZ62973.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
            subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
          Length = 1739

 Score = 1636 bits (4237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 855/1578 (54%), Positives = 1096/1578 (69%), Gaps = 87/1578 (5%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLG 58
            M  +FPYS A +  V+ VQFG+LSP+E+R +SV +IE+ ET ++    P+ GGL+DPRLG
Sbjct: 1    MSRQFPYSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKTPREGGLNDPRLG 60

Query: 59   TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
            +IDR  +C+TC  +MAECPGHFGH+ELAKP+FHIGF+  +  +   VC +C K+L DE++
Sbjct: 61   SIDRNFRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDENN 120

Query: 119  HKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKL 178
                QA+KIR+PK R   +   CK K  CE     D+  +   E     +GGCG  QP +
Sbjct: 121  PAMAQAIKIRDPKKRFNAVWQLCKAKMVCE----TDIIEEGATE--TTTRGGCGHTQPTI 174

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              +G+K+   ++    KN ++ + PE    ++ LT   +L VLK IS  DC  LG N  Y
Sbjct: 175  RRDGLKLWGTWR--HNKNFEENEQPE----RRLLTPSEILNVLKHISSLDCLRLGFNEDY 228

Query: 239  ARPDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARP+WM++ VLP+PPP            R  DDLT +LA +++ N N++R E +G+P H+
Sbjct: 229  ARPEWMLITVLPVPPPPVRPSIAFNDTARGEDDLTFKLADVLKANINVQRLEMDGSPQHV 288

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ISEF  LLQFH+ATY DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFS
Sbjct: 289  ISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFS 348

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVI+ DP +++DQ+GVP SIA  L+YPE VTPYNI RL E V  GP+  PG   AKY+
Sbjct: 349  ARTVISGDPNLDLDQVGVPISIARTLSYPEVVTPYNIHRLTEYVRNGPNEHPG---AKYV 405

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IRD G R+DLRY K++ D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPY
Sbjct: 406  IRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPY 465

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ E+  VP  IVSPQSN+PVMGIVQ
Sbjct: 466  STFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQ 525

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL G RK+T RD FI+ D  MN+L W  ++DG +P P I KP+PLWTGKQ+ ++ IPK 
Sbjct: 526  DTLCGIRKMTLRDNFIDYDQVMNMLYWIPNWDGVIPPPAIAKPKPLWTGKQLLSMAIPKG 585

Query: 589  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            I+L R      D  K +L+  DT + I  GE++ G + KKT+G + G LIH +  E GP 
Sbjct: 586  IHLQR-----FDGGKDLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPR 640

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
               +     Q + NYWLL N FSIGIGDTIAD  TM+ I  TIS+AK  V+ +I  AQ  
Sbjct: 641  VCAQLFSSIQKVTNYWLLHNGFSIGIGDTIADVSTMKDITSTISEAKIKVQEIILDAQSN 700

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             LEPEPG T+ ESFE+ V++VLN ARD AG SA+ +L + NN+K MV +GSKGSFINISQ
Sbjct: 701  KLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQ 760

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            M+ACVGQQ VEGKRIPFGF DRTLPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM G
Sbjct: 761  MSACVGQQIVEGKRIPFGFSDRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAG 820

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E 
Sbjct: 821  REGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQVEK 880

Query: 889  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
            Q++D++      F++ FR ++ + + +    L E   ++K   +L+ V D E ++L  DR
Sbjct: 881  QSVDTIPGSNDSFERRFRIDVLDSSKSIPESLLESGKEIKGDVKLQKVLDEEYKQLLDDR 940

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
              L      +GD SWPLPVNL+R+I NAQ+ F     + SD+   EV+  V  L E+L V
Sbjct: 941  KYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYKASDLRLDEVIVGVRSLCEKLLV 1000

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            V G+  L  EAQ NATL F  L+RS  AS+RV++E +L R +FEWV+GEIE++F +S+V 
Sbjct: 1001 VRGDTELVKEAQANATLLFQCLVRSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIVH 1060

Query: 1069 PGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVF 1128
            PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTP+L+V+
Sbjct: 1061 PGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALTVY 1120

Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDE 1188
            L P ++   E+AK VQ A+E+T+L++VT +TE++YDPDP  T+IEED + V++Y+ +PDE
Sbjct: 1121 LDPALSDDIEKAKVVQSAIEHTSLKNVTSSTEIYYDPDPRTTVIEEDYDTVEAYFSIPDE 1180

Query: 1189 DI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
             +  + EK SPWLLR+EL+R  M+DK+L+MA VAEKI+Q F +DL  I++DD ADKLI+R
Sbjct: 1181 KVEESIEKQSPWLLRLELDRAKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIR 1240

Query: 1247 IRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR---------------------- 1284
             R++ D  PK    +  AE+D  LK+IE++ML  ++LR                      
Sbjct: 1241 CRVVRD--PKSLDEEADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVNTPDATG 1298

Query: 1285 -------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
                         GVNL  VM    VD+ RT SN+ IEI+ VLGIEA R AL  E+  V+
Sbjct: 1299 EFKQGKEWVLETDGVNLADVMAVPGVDSSRTYSNNFIEILSVLGIEATRAALFKEILNVL 1358

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
            SFDGSYVNYRH+A+L D MT RGHLMAITRHGINR+DTG +MRCSFEETV+ILL+A   A
Sbjct: 1359 SFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLEAGASA 1418

Query: 1392 ESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPV 1451
            E D  RG++EN+MLGQ+AP+GTG   + L+D+ML+ A     PS +  +  G        
Sbjct: 1419 ELDDCRGISENVMLGQMAPLGTGAFDVMLDDKMLQTA-----PSNV-AVAAGNDEFADDG 1472

Query: 1452 SGTPYHDGMMSPGYL-FSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSP 1510
              TPY +  M    + F      SP+  AQ     GG+     +S G  P+SP  S +SP
Sbjct: 1473 GATPYREYDMEDDKIQFEEGAGFSPIHTAQVQDVSGGL-----TSYGGQPTSP--SATSP 1525

Query: 1511 -GYSPTSPGY-SPTSPGY 1526
              Y  TSP +    SPGY
Sbjct: 1526 FSYGSTSPSFGGSVSPGY 1543



 Score = 40.4 bits (93), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 38/61 (62%), Gaps = 14/61 (22%)

Query: 1748 YSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDK 1806
            YSP+SP         YSP+SP YSP++  YSP++P YSP S  +Y+P + +    T+D K
Sbjct: 1690 YSPTSP--------QYSPTSPSYSPTSPQYSPTSPQYSPGS-PEYSPNSPK----TEDKK 1736

Query: 1807 N 1807
            N
Sbjct: 1737 N 1737


>gi|413915238|gb|AFW21481.1| RNA polymerase II largest subunit [Aciculosporium take]
          Length = 1761

 Score = 1635 bits (4235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 871/1783 (48%), Positives = 1156/1783 (64%), Gaps = 195/1783 (10%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG++SP+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
             KC+TCT  M++CPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F  
Sbjct: 67   FKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFAS 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            A+  R+ K R  ++   CK K +CE  D  +   ++   G +P+  N GGCG  QP++  
Sbjct: 127  AIGTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFTPGMKPVVNNHGGCGNVQPQVRQ 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNPKY 238
              +++ A +         QE  P+   R++T  +T E   G+LKRIS+ED + +GLN  Y
Sbjct: 187  TALQLKAAFDVA------QEDGPK---RRETVPITPEMAHGILKRISEEDLRNMGLNSDY 237

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+W+I+ V             +      +R  DDLT++L  IIR N N+++  R G+P
Sbjct: 238  ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI RL  LVE GP+  PG   A
Sbjct: 358  DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGRLHHLVENGPNEHPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR+++
Sbjct: 415  KYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRV 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL +VP  IVSPQ N P+MG
Sbjct: 475  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSPQKNGPLMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQD+L G  KI +RDTFI+K++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ +++I
Sbjct: 535  IVQDSLAGAYKICRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVI 594

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            PK+I+L    +  A  D   +   DT + I+ GELL G L KK +G++ G ++H+ + E+
Sbjct: 595  PKEISLHSPESSGA-QDNADIPLKDTGLLIQSGELLYGLLRKKNIGSAAGGIVHLSYNEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP+ A  FL   Q +V YWLL N  SIGIGDT+ D +T+E +   I   K  V  L  QA
Sbjct: 654  GPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  +  +FENKV+  LN+ARD+AG++ Q+SL +SNN   M  +GSKGS IN
Sbjct: 714  TANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHA
Sbjct: 774  ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D++ 
Sbjct: 834  MAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLDAMC 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE Q L  LKM  + F+K +R ++    E +   Y   EY ++L   KE  D+ D+E   
Sbjct: 894  IEKQKLGILKMSDAAFEKKYRLDLANPPEWFKKEY---EYGNELAGDKESMDLLDSEWDA 950

Query: 944  LEADRYQL-ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            LE+DR+ +     +  GD    LP+N+ R++ +A++ F V     S++ P++V+  V  L
Sbjct: 951  LESDRHVVRGINRSKMGDEMLQLPLNIGRMVESAKRVFNVRATDRSNLRPVDVIPRVQNL 1010

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
               LKVV G DP+S+EA  NAT+ F  L+RS  A K ++K HRL++ AF+ V+GE+++R+
Sbjct: 1011 LSNLKVVRGSDPISIEADNNATILFKALIRSRLAFKEIVKVHRLSKLAFDHVLGELQNRW 1070

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             +S V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK IKT
Sbjct: 1071 DRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIKT 1130

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS++V+L   +  T+E+AK ++  +EYT LRS+T  TE++YDPD  GT I ED++ V+SY
Sbjct: 1131 PSMAVYLNTHL-GTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIAEDMDMVESY 1189

Query: 1183 YEMPDE-DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            + +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+ +DL  IF+D+NAD
Sbjct: 1190 FLIPDDAQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPNDLAVIFSDNNAD 1249

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            + ++RIR +  ++ K E  +   EDDV LK++E+++L  + LRGV               
Sbjct: 1250 EQVIRIRTIRADSEKDEEGERRIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTRLV 1309

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                       L  V+  + VD  RT +N L +I+EV GIEA R
Sbjct: 1310 VDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIEAAR 1369

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSFEET
Sbjct: 1370 SALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSFEET 1429

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  ++L+ +ML+  I        +  
Sbjct: 1430 VEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPKMLETVIS-------DNS 1482

Query: 1441 EFGMTPARSPVSG-------TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGG------ 1487
              G+ P   P+ G       TPY  G  SP    S  + +S      FSP  G       
Sbjct: 1483 RMGLMPGM-PIKGGEAEGAATPYDTG--SPMSNDSGYMSMSSPAAGNFSPIQGAGSETPA 1539

Query: 1488 ---------------MAFSPTSSPGYSPSSP------------GYSPSSP--GYSPTSPG 1518
                              SP S  G +                GYSP+SP  GYSPTSP 
Sbjct: 1540 GFGTEYGGGGFGGGIGTMSPYSMRGATSPFSSSPASPFSAGMGGYSPTSPNAGYSPTSPL 1599

Query: 1519 Y------------------------------SPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1548
                                           SP SP YSPTSP YSPTSPT SP    YS
Sbjct: 1600 LDGGVGRYASSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPT-SPRH--YS 1656

Query: 1549 PTSPAY--SPTSPSYSPTSPSYSPTSPSY------------------SPTSPSYSPTSPS 1588
            PTSPA   SPTSPSYSP SP+YSP SP+                     +  +YSPTSPS
Sbjct: 1657 PTSPAQFNSPTSPSYSPASPNYSPASPNLHGMGATSPSYSPASPSWSPTSPEAYSPTSPS 1716

Query: 1589 Y--------SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
            +        SPTSPSYSPTSP++SP +P    +   YSP SPA
Sbjct: 1717 FQRSPGNQQSPTSPSYSPTSPAFSPRTPGPGNSGNQYSPNSPA 1759



 Score = 94.7 bits (234), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 74/177 (41%), Positives = 85/177 (48%), Gaps = 66/177 (37%)

Query: 1645 YSPTSPS--YSPTSPSY------------------------------SPTSPAYSPTSPG 1672
            YSPTSP+  YSPTSP                                SP SP YSPTSP 
Sbjct: 1584 YSPTSPNAGYSPTSPLLDGGVGRYASSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPS 1643

Query: 1673 YSPTSPS----YSPTSPTY--SPTSPSYNPQSAKYSPSL--------------------- 1705
            YSPTSP+    YSPTSP    SPTSPSY+P S  YSP+                      
Sbjct: 1644 YSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGMGATSPSYSPASPSWS 1703

Query: 1706 -----AYSPSSPRL--SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYN 1755
                 AYSP+SP    SP +  SPTSP+YSPTS ++SP +P    S   YSP+SP N
Sbjct: 1704 PTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPAFSPRTPGPGNSGNQYSPNSPAN 1760



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 68/165 (41%), Positives = 83/165 (50%), Gaps = 45/165 (27%)

Query: 1672 GYSPTSPS--YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSP 1729
            GYSPTSP+  YSPTSP        Y    +    S ++SP+SP L P SP    SPNYSP
Sbjct: 1583 GYSPTSPNAGYSPTSPLLDGGVGRYASSPSFSPSSPSFSPTSPMLRPTSP---ASPNYSP 1639

Query: 1730 TSSSY--------------------SPTSPSYSPSSPTYSPSSPYNAGGG---------- 1759
            TS SY                    SPTSPSYSP+SP YSP+SP   G G          
Sbjct: 1640 TSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGMGATSPSYSPAS 1699

Query: 1760 -------NPDYSPSSP--QYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
                      YSP+SP  Q SP    SP++P YSP+S + ++P+T
Sbjct: 1700 PSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPA-FSPRT 1743


>gi|413915220|gb|AFW21472.1| RNA polymerase II largest subunit [Epichloe elymi]
          Length = 1754

 Score = 1635 bits (4234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 867/1770 (48%), Positives = 1167/1770 (65%), Gaps = 162/1770 (9%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG++SP+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
            +KC+TCT  M++CPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F  
Sbjct: 67   LKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            A++ R+ K R  ++   CK K +CE  D  +   ++   G +P+  N GGCG  QP++  
Sbjct: 127  AIQTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKPVVNNHGGCGNVQPQVRQ 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNPKY 238
              +++ A +         QE  P+   R++T  +T E   G+LKRIS+ED + +GLN  Y
Sbjct: 187  AALQLKAAFDVV------QEDGPK---RRETVPITPEMAHGILKRISEEDLRQMGLNSDY 237

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+W+I+ V             +      +R  DDLT++L  IIR N N+++  R G+P
Sbjct: 238  ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG   A
Sbjct: 358  DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR+++
Sbjct: 415  KYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRV 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N P+MG
Sbjct: 475  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGPLMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            +VQD+L G  K+ +RDTF++K++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ +++I
Sbjct: 535  VVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVI 594

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            PK+I+L    +     D   +   DT + I+ GELL G L KK +G++ G ++H+ + E+
Sbjct: 595  PKEISLHSPES-SGGQDNADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP+ A  FL   Q +V YWLL N  SIGIGDT+ D +T+E +   I   K  V  L  QA
Sbjct: 654  GPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  +  +FENKV+  LN+ARD+AG++ Q+SL +SNN   M  +GSKGS IN
Sbjct: 714  TANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHA
Sbjct: 774  ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D++ 
Sbjct: 834  MAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLDAMC 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEM-DEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE Q L  LKM  + F+  +R ++ +  +W   +Y   EY ++L   KE  D+ D+E   
Sbjct: 894  IEKQKLGILKMSDAAFETKYRLDLANPPDWFKKDY---EYGNELAGDKESMDLLDSEWDH 950

Query: 944  LEADRYQLATEIATS-GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            L  DR  +     T  G+    LP+N+ R+I  A++ F V     S++ P +V+  +  L
Sbjct: 951  LLNDRRIVRLINRTKMGEEMMQLPLNIGRIIETAKRVFNVRATDRSNLRPADVIPRIQNL 1010

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
               LK+V G DP+S+EA ++AT+ F  L+RS  A K ++K HRL + AF+ V+GE+++++
Sbjct: 1011 LSDLKIVRGSDPISIEADESATILFRALIRSRLAFKEIVKVHRLNKLAFDHVLGELQNQW 1070

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             ++ V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK IKT
Sbjct: 1071 DRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIKT 1130

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS++V+L   +  T+E+AK ++  +EYT LRS+T  TE++YDPD  GT I ED++ V+SY
Sbjct: 1131 PSMAVYLNTHL-GTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVESY 1189

Query: 1183 YEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            + +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+  DL  IF+D+NAD
Sbjct: 1190 FLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDNNAD 1249

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            + ++RIR +  +  K E  ++  EDDV LK++E+++L  + LRGV               
Sbjct: 1250 EQVIRIRTIRTDNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTRLV 1309

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                       L  V+  + VD  RT +N L +I+EV GIEA R
Sbjct: 1310 VDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIEAAR 1369

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSFEET
Sbjct: 1370 SALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSFEET 1429

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  ++L+ +ML+  I     +   GL
Sbjct: 1430 VEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPKMLETVIS---DNSRMGL 1486

Query: 1441 EFGMTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMA--------- 1489
              GM        G  TPY  G  SP    S  + +S      FSP  G ++         
Sbjct: 1487 MPGMPVKEGEAEGAATPYDTG--SPMSNDSGYMSISSPAAGNFSPIQGAVSETLSGFNTE 1544

Query: 1490 ----FSPTSSPGY-SPSSPGYSPSSPGYSPTSPGYSPTSP--GYSPTSPGYSPTSPTY-- 1540
                 SP S  G  SP S   SP+SP  +P + GYSP+SP  GYSPTSP    ++  Y  
Sbjct: 1545 YKGPMSPYSMRGVTSPFST--SPTSPFSAPMASGYSPSSPNAGYSPTSPLLDGSAGRYPT 1602

Query: 1541 ---------------------SPSSPGYSPTSPAYSPTSPS----YSPTSPSY--SPTSP 1573
                                 SP+SP YSPTSP+YSPTSP+    YSPTSP+   SPTSP
Sbjct: 1603 SPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSP 1662

Query: 1574 SYSPTSPSYSPTSPSY------------------SPTSPSYSPTSPSY--------SPTS 1607
            SYSP SP+YSP SP+                     +  +YSPTSPS+        SPTS
Sbjct: 1663 SYSPASPNYSPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTS 1722

Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
            P+YSPTSPA+SP +P    +   YSP SPS
Sbjct: 1723 PSYSPTSPAFSPRTPGPGNSGNQYSPNSPS 1752



 Score =  113 bits (282), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/239 (40%), Positives = 121/239 (50%), Gaps = 68/239 (28%)

Query: 1590 SPTSPSYSPTSPSYSPTSPAYS-----PTSPAYS---PTSP-AYSPTSPSYSPTSPSYSP 1640
            SP + ++SP   + S T   ++     P SP YS    TSP + SPTSP  +P +  YSP
Sbjct: 1521 SPAAGNFSPIQGAVSETLSGFNTEYKGPMSP-YSMRGVTSPFSTSPTSPFSAPMASGYSP 1579

Query: 1641 TSPS--YSPTSPSYSPTSPSY-----------------------SPTSPAYSPTSPGYSP 1675
            +SP+  YSPTSP    ++  Y                       SP SP YSPTSP YSP
Sbjct: 1580 SSPNAGYSPTSPLLDGSAGRYPTSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSP 1639

Query: 1676 TSPS----YSPTSPTY--SPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS----------- 1718
            TSP+    YSPTSP    SPTSPSY+P S        YSP+SP L  A            
Sbjct: 1640 TSPTSPRHYSPTSPAQFNSPTSPSYSPASPN------YSPASPNLHGAGPTSPSYSPASP 1693

Query: 1719 --------PYSPTSPNYSPT-SSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP 1768
                     YSPTSP++  +  +  SPTSPSYSP+SP +SP +P     GN  YSP+SP
Sbjct: 1694 SWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPAFSPRTPGPGNSGN-QYSPNSP 1751



 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 112/225 (49%), Gaps = 42/225 (18%)

Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYS---PTSP- 1657
            Y   SP  S  S   S +SPA    SP     S + S  +  Y  P SP YS    TSP 
Sbjct: 1504 YDTGSP-MSNDSGYMSISSPAAGNFSPIQGAVSETLSGFNTEYKGPMSP-YSMRGVTSPF 1561

Query: 1658 SYSPTSPAYSPTSPGYSPTSPS--YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLS 1715
            S SPTSP  +P + GYSP+SP+  YSPTSP    ++  Y    +    S ++SP+SP L 
Sbjct: 1562 STSPTSPFSAPMASGYSPSSPNAGYSPTSPLLDGSAGRYPTSPSFSPSSPSFSPTSPMLR 1621

Query: 1716 PASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGG-GNPDYSPSSPQYSPSA 1774
            P SP    SPNYSPTS SYSPTSP+   S   YSP+SP       +P YSP+SP YSP++
Sbjct: 1622 PTSP---ASPNYSPTSPSYSPTSPT---SPRHYSPTSPAQFNSPTSPSYSPASPNYSPAS 1675

Query: 1775 --------------------------GYSPSAPGYSPSSTSQYTP 1793
                                       YSP++P +  S  +Q +P
Sbjct: 1676 PNLHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSP 1720


>gi|413915224|gb|AFW21474.1| RNA polymerase II largest subunit [Epichloe typhina]
          Length = 1746

 Score = 1635 bits (4234), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 868/1765 (49%), Positives = 1164/1765 (65%), Gaps = 167/1765 (9%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG++SP+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
            +KC+TCT  M++CPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F  
Sbjct: 67   LKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            A++ R+ K R  ++   CK K +CE  D  +   ++   G +P+  N GGCG  QP++  
Sbjct: 127  AIQTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKPVVNNHGGCGNVQPQVRQ 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNPKY 238
              +++ A +         QE  P+   R++T  +T E   G+LKRIS+ED + +GLN  Y
Sbjct: 187  AALQLKAAFDVV------QEDGPK---RRETVPITPEMAHGILKRISEEDLRQMGLNSDY 237

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+W+I+ V             +      +R  DDLT++L  IIR N N+++  R G+P
Sbjct: 238  ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG   A
Sbjct: 358  DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR+++
Sbjct: 415  KYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRV 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N P+MG
Sbjct: 475  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGPLMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            +VQD+L G  K+ +RDTF++K++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ +++I
Sbjct: 535  VVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVI 594

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            PK+I+L    +     D   +   DT + I+ GELL G L KK +G++ G ++H+ + E+
Sbjct: 595  PKEISLHSPES-SGGQDNADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP+ A  FL   Q +V YWLL N  SIGIGDT+ D +T+E +   I   K  V  L  QA
Sbjct: 654  GPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  +  +FENKV+  LN+ARD+AG++ Q+SL +SNN   M  +GSKGS IN
Sbjct: 714  TANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHA
Sbjct: 774  ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D++ 
Sbjct: 834  MAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLDAMC 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEM-DEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE Q L  LKM  + F+  +R ++ +  +W   +Y   EY ++L   KE  D+ D+E   
Sbjct: 894  IEKQKLGILKMSDAAFETKYRLDLANPPDWFKKDY---EYGNELAGDKESMDLLDSEWDH 950

Query: 944  LEADRYQLATEIATS-GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            L  DR  +     T  G+    LP+N+ R+I  A++ F V     S++ P +V+  +  L
Sbjct: 951  LLNDRRIVRLINRTKMGEEMMQLPLNIGRIIETAKRVFNVRATDRSNLRPADVIPRIQNL 1010

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
               L++V G DP+S+EA ++AT+ F  L+RS  A K ++K HRL + AF+ V+GE+++R+
Sbjct: 1011 LSDLRIVRGSDPISIEADESATILFKALIRSRLAFKEIVKVHRLNKLAFDHVLGELQNRW 1070

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             ++ V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK IKT
Sbjct: 1071 DRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIKT 1130

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS++V+L   +  T+E+AK ++  +EYT LRS+T  TE++YDPD  GT I ED++ V+SY
Sbjct: 1131 PSMAVYLNTHL-GTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVESY 1189

Query: 1183 YEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            + +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+  DL  IF+D+NAD
Sbjct: 1190 FLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDNNAD 1249

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            + ++RIR +  +  K E  ++  EDDV LK++E+++L  + LRGV               
Sbjct: 1250 EQVIRIRTIRTDNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTRLV 1309

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                       L  V+  + VD  RT +N L +I+EV GIEA R
Sbjct: 1310 VDDDGAEIAKKDDEKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIEAAR 1369

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSFEET
Sbjct: 1370 SALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSFEET 1429

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  ++L+ +ML+  I     +   GL
Sbjct: 1430 VEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPKMLETVIS---DNSRMGL 1486

Query: 1441 EFGMTPARSPVSG--TPYHDGM-MS--PGYL---------FSPNLRLSPVTDAQFSPYVG 1486
              GM        G  TPY  G  MS   GY+         FSP       T   F PY+ 
Sbjct: 1487 MPGMPVKEGEAEGAATPYDTGSPMSNDSGYMSISSPAAGNFSPIQGAGSETPTGFGPYLT 1546

Query: 1487 GMAFSPTSSPGYSPSSPGYSPSSPGYSPTSP--GYSPTSPGYSPTSPGYS---------- 1534
              A SP S+   SP+SP  +  +  YSP+SP  GYSPTSP     +  Y+          
Sbjct: 1547 RGATSPFST---SPTSPFNASMAVSYSPSSPNAGYSPTSPLLDGGAGRYATSPSFSPSSP 1603

Query: 1535 ----------PTSPTYSPSSPGYSPTSPAYSPTSPS----YSPTSPSY--SPTSPSYSPT 1578
                      PTSP    +SP YSPTSP+YSPTSP+    YSPTSP+   SPTSPSYSP 
Sbjct: 1604 SFSPTSPMLRPTSP----ASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPA 1659

Query: 1579 SPSYSPTSP-------------------------SYSPTSPSY--------SPTSPSYSP 1605
            SP+YSP SP                         +YSPTSPS+        SPTSPSYSP
Sbjct: 1660 SPNYSPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSP 1719

Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPS 1630
            TSPA+SP +P    +   YSP SPS
Sbjct: 1720 TSPAFSPRTPGPGNSGNQYSPNSPS 1744



 Score =  102 bits (253), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 90/226 (39%), Positives = 112/226 (49%), Gaps = 57/226 (25%)

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSP--TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS--Y 1652
            SP + ++SP   A S T   + P  T  A SP S S  PTSP  +  + SYSP+SP+  Y
Sbjct: 1521 SPAAGNFSPIQGAGSETPTGFGPYLTRGATSPFSTS--PTSPFNASMAVSYSPSSPNAGY 1578

Query: 1653 SPTSPSYSPTSPAYSPTSPG-------------YSPTSPSY---SPTSPTYSPTSPSYNP 1696
            SPTSP     +  Y+ +                  PTSP+    SPTSP+YSPTSP+   
Sbjct: 1579 SPTSPLLDGGAGRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPR 1638

Query: 1697 QSAKYSPSLAYSPSSPRLSPASP-YSPTSPN-------------------------YSPT 1730
              +  SP+   SP+SP  SPASP YSP SPN                         YSPT
Sbjct: 1639 HYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPT 1698

Query: 1731 SSSY--------SPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP 1768
            S S+        SPTSPSYSP+SP +SP +P     GN  YSP+SP
Sbjct: 1699 SPSFQRSPGNQQSPTSPSYSPTSPAFSPRTPGPGNSGN-QYSPNSP 1743



 Score = 96.3 bits (238), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/211 (39%), Positives = 112/211 (53%), Gaps = 50/211 (23%)

Query: 1632 SPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT--Y 1687
            SP + ++SP   + S T   + P  T  + SP S   SPTSP  +  + SYSP+SP   Y
Sbjct: 1521 SPAAGNFSPIQGAGSETPTGFGPYLTRGATSPFST--SPTSPFNASMAVSYSPSSPNAGY 1578

Query: 1688 SPTSPSYNPQSAKYSPSLAY-----------------SPSSPRLSPASP-YSPTSP---- 1725
            SPTSP  +  + +Y+ S ++                 SP+SP  SP SP YSPTSP    
Sbjct: 1579 SPTSPLLDGGAGRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPR 1638

Query: 1726 NYSPTSSSY--SPTSPSYSPSSPTYSPSSPYNAGGGNPD-----------------YSPS 1766
            +YSPTS +   SPTSPSYSP+SP YSP+SP   G G                    YSP+
Sbjct: 1639 HYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPT 1698

Query: 1767 SP--QYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
            SP  Q SP    SP++P YSP+S + ++P+T
Sbjct: 1699 SPSFQRSPGNQQSPTSPSYSPTSPA-FSPRT 1728


>gi|413915232|gb|AFW21478.1| RNA polymerase II largest subunit [Neotyphodium gansuense]
          Length = 1761

 Score = 1635 bits (4233), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 871/1775 (49%), Positives = 1155/1775 (65%), Gaps = 172/1775 (9%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG++SP+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
             KC+TCT  M++CPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F  
Sbjct: 67   FKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            A+  R+ K R  ++   CK K +CE  D  +   ++   G +P+  N GGCG  QP++  
Sbjct: 127  AIHTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKPVVNNHGGCGNVQPQVRQ 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNPKY 238
              +++ A +         QE  P+   R++T  +T E   G+LKRIS+ED + +GLN  Y
Sbjct: 187  AALQLKAAFDVV------QEDGPK---RRETVPITPEMAHGILKRISEEDLRHMGLNSDY 237

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+W+I+ V             +      +R  DDLT++L  IIR N N+++  R G+P
Sbjct: 238  ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG   A
Sbjct: 358  DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR+++
Sbjct: 415  KYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRV 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N P+MG
Sbjct: 475  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGPLMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            +VQD+L G  KI +RDTFI+K++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ +++I
Sbjct: 535  VVQDSLAGAYKICRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVI 594

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            PK+I+L    +     D   +   DT + I+ GELL G L KK +G++ G ++H+ + E+
Sbjct: 595  PKEISLHSPES-SGGQDNADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GPD A  FL   Q +V YWLL N  SIGIGDT+ D +T+E +   I   K  V  L  QA
Sbjct: 654  GPDGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  +  +FENKV+  LN+ARD+AG++ Q+SL +SNN   M  +GSKGS IN
Sbjct: 714  TANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMADSGSKGSSIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHA
Sbjct: 774  ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D++ 
Sbjct: 834  MAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLDAMC 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE Q L  LKM  + F+  +R ++    E +  +Y   EY ++L   KE  D+ D+E   
Sbjct: 894  IEKQKLGILKMSDAAFETKYRLDLANPPEWFKKDY---EYGNELAGDKESMDLLDSEWDH 950

Query: 944  LEADRYQLATEIATS-GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            L  DR  +     T  G+    LP+N+ R+I  A++ F V     S++ P +V+  +  L
Sbjct: 951  LLNDRRIVRLINRTKMGEEMMQLPLNIGRIIETAKRVFNVRATDRSNLRPADVIPRIQTL 1010

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
               LK+V G DP+SVEA  NAT+ F  L+RS  A K ++K HRL + AF+ V+GE+++R+
Sbjct: 1011 LSDLKIVRGSDPISVEADDNATILFKALIRSRLAFKEIVKVHRLNKLAFDHVLGELQNRW 1070

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             +S V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK IKT
Sbjct: 1071 DRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIKT 1130

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS++V+L   +  T+E+AK ++  +EYT LRS+T  TE++YDPD  GT I ED++ V+SY
Sbjct: 1131 PSMAVYLNTHL-GTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVESY 1189

Query: 1183 YEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            + +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+  DL  IF+D+NAD
Sbjct: 1190 FLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDNNAD 1249

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            + ++RIR +  +  K E  ++  EDDV LK++E+++L  + LRGV               
Sbjct: 1250 EQVIRIRTIRADNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGIERAFLTKGTRLV 1309

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                       L  V+  + VD  RT +N L +++EV GIEA R
Sbjct: 1310 VDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQVVEVFGIEAAR 1369

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSFEET
Sbjct: 1370 SALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSFEET 1429

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  ++L+ +ML+  I     +   GL
Sbjct: 1430 VEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPKMLETVIS---DNSRMGL 1486

Query: 1441 EFGMTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPT----- 1493
              GM        G  TPY  G  SP    S  + +S      FSP  G  + +P      
Sbjct: 1487 MPGMPVKEGEAEGAATPYDTG--SPMSNDSGYMSMSSPAAGNFSPIQGAGSETPAGFGTE 1544

Query: 1494 -------SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSP--GYSPTSPTY---- 1540
                        SP S   + S    SPTSP  +  + GYSP+SP  GYSPTSP      
Sbjct: 1545 YGGGGFGGIGTMSPYSMRGATSPFSTSPTSPFGAGMAAGYSPSSPNAGYSPTSPLLDGGA 1604

Query: 1541 --------------------------SPSSPGYSPTSPAYSPTSPS----YSPTSPSY-- 1568
                                      SP+SP YSPTSP+YSPTSP+    YSPTSP+   
Sbjct: 1605 GRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFN 1664

Query: 1569 SPTSPSYSPTSPSYSPTSP-------------------------SYSPTSPSY------- 1596
            SPTSPSYSP SP+YSP SP                         +YSPTSPS+       
Sbjct: 1665 SPTSPSYSPASPNYSPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQ 1724

Query: 1597 -SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
             SPTSPSYSPTSPA+SP +P        YSP SPS
Sbjct: 1725 QSPTSPSYSPTSPAFSPRTPGPGNAGNQYSPNSPS 1759



 Score =  119 bits (298), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/196 (46%), Positives = 112/196 (57%), Gaps = 28/196 (14%)

Query: 1599 TSP-SYSPTSPAYSPTSPAYSPTSP--AYSPTSPSYSPTSPSYSPTSPSY---------- 1645
            TSP S SPTSP  +  +  YSP+SP   YSPTSP     +  Y+ +              
Sbjct: 1565 TSPFSTSPTSPFGAGMAAGYSPSSPNAGYSPTSPLLDGGAGRYATSPSFSPSSPSFSPTS 1624

Query: 1646 ------SPTSPSYSPTSPSYSPTSPA----YSPTSPGY--SPTSPSYSPTSPTYSPTSPS 1693
                  SP SP+YSPTSPSYSPTSP     YSPTSP    SPTSPSYSP SP YSP SP+
Sbjct: 1625 PMLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPN 1684

Query: 1694 YNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPT-SSSYSPTSPSYSPSSPTYSPSS 1752
             +  +   SPS + +  S   +    YSPTSP++  +  +  SPTSPSYSP+SP +SP +
Sbjct: 1685 LH-GAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPAFSPRT 1743

Query: 1753 PYNAGGGNPDYSPSSP 1768
            P     GN  YSP+SP
Sbjct: 1744 PGPGNAGN-QYSPNSP 1758



 Score = 75.5 bits (184), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/169 (40%), Positives = 88/169 (52%), Gaps = 36/169 (21%)

Query: 1655 TSP-SYSPTSPAYSPTSPGYSPTSPS--YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS 1711
            TSP S SPTSP  +  + GYSP+SP+  YSPTSP     +  Y    +    S ++SP+S
Sbjct: 1565 TSPFSTSPTSPFGAGMAAGYSPSSPNAGYSPTSPLLDGGAGRYATSPSFSPSSPSFSPTS 1624

Query: 1712 PRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGG-GNPDYSPSSPQY 1770
            P L P SP    SPNYSPTS SYSPTSP+   S   YSP+SP       +P YSP+SP Y
Sbjct: 1625 PMLRPTSP---ASPNYSPTSPSYSPTSPT---SPRHYSPTSPAQFNSPTSPSYSPASPNY 1678

Query: 1771 SPSA--------------------------GYSPSAPGYSPSSTSQYTP 1793
            SP++                           YSP++P +  S  +Q +P
Sbjct: 1679 SPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSP 1727


>gi|322712011|gb|EFZ03584.1| DNA-directed RNA polymerase II largest subunit [Metarhizium
            anisopliae ARSEF 23]
          Length = 1755

 Score = 1634 bits (4231), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 874/1786 (48%), Positives = 1168/1786 (65%), Gaps = 144/1786 (8%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG++SP+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMDESRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
             KC+TCT +M++CPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F  
Sbjct: 67   FKCKTCTQSMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVT 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            A+  R+ K R  ++   CK K +CE  D  +    +   G +P+  N GGCG  QP++  
Sbjct: 127  AINTRDAKLRFNRVWAVCKKKRRCENEDRNEKNDDEFAPGMKPVAHNHGGCGNVQPQVRQ 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNPKY 238
              +++ A +         QE  P+   R++T  +T E   G+L+RIS+ED + +GLN  Y
Sbjct: 187  AALQLKAAFDVA------QEDGPK---RRETVPITPEMAHGILRRISEEDLRHMGLNSDY 237

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+WMIL V             +      +R  DDLT++L  IIR N N+++  R G+P
Sbjct: 238  ARPEWMILTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG   A
Sbjct: 358  DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR+++
Sbjct: 415  KYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRV 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL +VP  IVSPQ N P+MG
Sbjct: 475  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSPQKNGPLMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQD+L G  K+ +RDTFI+K++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ +++I
Sbjct: 535  IVQDSLAGVYKLCRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVI 594

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            P++I+L      HA      +   DT + I+ GELL G L KK +G + G +IH+ + E+
Sbjct: 595  PQEISL------HAPEGDSDIPLKDTGLLIQSGELLYGLLKKKNVGAAAGGIIHLCYNEL 648

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GPD A  FL   Q +V YWLL    SIGIGDT+ D +T+E I   I   K  V  L  QA
Sbjct: 649  GPDGAMAFLNGVQQVVTYWLLNTGHSIGIGDTVPDKQTIEKIQVHIDTQKAEVAKLTAQA 708

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  +  +FENKV+  LN+ARD+AG++ QKSL +SNN   M  +GSKGS IN
Sbjct: 709  TANELEALPGMNVRATFENKVSMALNSARDQAGTTTQKSLKDSNNAVTMSESGSKGSSIN 768

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHA
Sbjct: 769  ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHA 828

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD++QFLYGEDG+D++ 
Sbjct: 829  MAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIVQFLYGEDGLDAMC 888

Query: 886  IESQTLDSLKMKKSEFDKAFRFEM-DEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE Q L  LKM  + F+K +R ++ +  +W   +Y   EY ++L   KE  D+ D+E + 
Sbjct: 889  IEKQKLGILKMSDAAFEKKYRLDLANPPDWFKKDY---EYGNELAGDKESMDLLDSEWET 945

Query: 944  LEADRYQLATEIATS--GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
            L +DR Q    I  S  G+    LP+N+ R+I  A++ F V     S++ P +V+  +  
Sbjct: 946  LLSDR-QTVRLINKSKMGEEMMQLPLNIGRMIETAKRVFNVRATDRSNLRPADVIPRIQN 1004

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L   L++V G DP+S+EA  NAT+ F  L+RS  A K ++K HRL + AF+ V+GE+++R
Sbjct: 1005 LLSELRIVRGSDPISMEADLNATILFKALVRSRLAFKEIVKVHRLNKLAFDHVLGELQNR 1064

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            + +S V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK IK
Sbjct: 1065 WDRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIK 1124

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPS++V+L   +  T+E+AK ++  +EYT LRS+T  TE++YDPD  GT I ED++ V+S
Sbjct: 1125 TPSMAVYLNTKL-GTQEQAKKLRSMVEYTNLRSITSVTEIYYDPDIQGTTIAEDMDMVES 1183

Query: 1182 YYEMPDE-DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
            Y+ +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+ +DL  IF+D+NA
Sbjct: 1184 YFLIPDDGQDNTDQQSRWLLRITLDRQKLLDKEIRIDDVAQRIKEEYPNDLAVIFSDNNA 1243

Query: 1241 DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-------------- 1286
            D+ ++RIR +     K E  ++  EDDV LK++E+++L  + LRGV              
Sbjct: 1244 DEQVIRIRTVRQSDEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGIERAFLTKGTRL 1303

Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                        L  V+  + VDA RT +N L +I+EV GIEA 
Sbjct: 1304 TVGEDGSELAIKDDPRCTQWYLDTSGSALRDVLAVDGVDASRTYTNDLWQIVEVFGIEAA 1363

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSFEE
Sbjct: 1364 RSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSFEE 1423

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEG 1439
            TV+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  + L+ +ML+  I     +   G
Sbjct: 1424 TVEILLEAAATGELDDCRGISENVMLGQLAPMGTGNFDVLLDPKMLETVIS---DNSRMG 1480

Query: 1440 LEFGMTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPG 1497
            L  GM        G  TPY  G  SP    S  + ++      FSP  G  + +P     
Sbjct: 1481 LMPGMPVKDGEAEGAATPYDTG--SPMSNDSGYMSMNSPAAGNFSPIQGAGSETPAGFGT 1538

Query: 1498 YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSP-----GYSPTSPTYSPSSPGYSPTSP 1552
                    +  S   SP S G +        +       GYSP+SP     + GYSPTSP
Sbjct: 1539 EYGGGGFGNVGS--MSPYSRGATSPFSTSPTSPFSSGMVGYSPSSP-----NAGYSPTSP 1591

Query: 1553 AYSPTSPSYSPTSPSYSPTSPS------YSPTSPSYSPTSPSYSPTSPSYSPTSPS---- 1602
                 +  Y+ +      +           PTSP+    SP+YSPTSPSYSPTSP+    
Sbjct: 1592 LLDGGAGRYATSPSFSPSSPSFSPTSPMLRPTSPA----SPNYSPTSPSYSPTSPTSPRH 1647

Query: 1603 YSPTSPAY--SPTSPAYSPTSPAYSPTSPSYSPTSPS------------YSPTSPSYSPT 1648
            YSPTSPA   SPTSP+YSP SP YSP SP+    + +               +  +YSPT
Sbjct: 1648 YSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAAGATSPSYSPASPSWSPTSPEAYSPT 1707

Query: 1649 SPSY--------SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
            SPS+        SPTSPSYSPTSPA+SP +PG   +   YSP SP+
Sbjct: 1708 SPSFQRSPGNQQSPTSPSYSPTSPAFSPRTPGPGNSGNQYSPNSPS 1753



 Score =  103 bits (258), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/181 (43%), Positives = 91/181 (50%), Gaps = 68/181 (37%)

Query: 1596 YSPTSPS--YSPTSPAYSPTSPAY-----------------------SPTSPAYSPTSPS 1630
            YSP+SP+  YSPTSP     +  Y                       SP SP YSPTSPS
Sbjct: 1577 YSPSSPNAGYSPTSPLLDGGAGRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPS 1636

Query: 1631 YSPTSPS----YSPTSPSY--SPTSPSYSPTSPSYSPTSP-------------------- 1664
            YSPTSP+    YSPTSP+   SPTSPSYSP SP+YSP SP                    
Sbjct: 1637 YSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAAGATSPSYSPASPSW 1696

Query: 1665 ------AYSPTSPGY--------SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPS 1710
                  AYSPTSP +        SPTSPSYSPTSP +SP +P       +YSP+   SPS
Sbjct: 1697 SPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPAFSPRTPGPGNSGNQYSPN---SPS 1753

Query: 1711 S 1711
            +
Sbjct: 1754 N 1754



 Score = 91.7 bits (226), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 86/243 (35%), Positives = 103/243 (42%), Gaps = 97/243 (39%)

Query: 1590 SPTSPSYSPTSPSYSPT---------------SPAYSPTS-------------------P 1615
            SP + ++SP   + S T                 + SP S                    
Sbjct: 1516 SPAAGNFSPIQGAGSETPAGFGTEYGGGGFGNVGSMSPYSRGATSPFSTSPTSPFSSGMV 1575

Query: 1616 AYSPTSP--AYSPTSPSYSPTSPSY-----------------------SPTSPSYSPTSP 1650
             YSP+SP   YSPTSP     +  Y                       SP SP+YSPTSP
Sbjct: 1576 GYSPSSPNAGYSPTSPLLDGGAGRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSP 1635

Query: 1651 SYSPTSPS----YSPTSPAY--SPTSPGYSPTSPSYSPTSP------------------- 1685
            SYSPTSP+    YSPTSPA   SPTSP YSP SP+YSP SP                   
Sbjct: 1636 SYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAAGATSPSYSPASPS 1695

Query: 1686 -------TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPT 1737
                    YSPTSPS+     + SP    SP+SP  SP SP +SP +P    + + YSP 
Sbjct: 1696 WSPTSPEAYSPTSPSF-----QRSPGNQQSPTSPSYSPTSPAFSPRTPGPGNSGNQYSPN 1750

Query: 1738 SPS 1740
            SPS
Sbjct: 1751 SPS 1753



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/211 (36%), Positives = 97/211 (45%), Gaps = 65/211 (30%)

Query: 1623 AYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPS------YSPTSPAYSPTSPGYS 1674
             YSP+SP+  YSPTSP     +  Y+ +      +           PTSPA    SP YS
Sbjct: 1576 GYSPSSPNAGYSPTSPLLDGGAGRYATSPSFSPSSPSFSPTSPMLRPTSPA----SPNYS 1631

Query: 1675 PTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSY 1734
            PTSPSYSPTS    PTSP +            YSP+SP    A   SPTSP+YSP S +Y
Sbjct: 1632 PTSPSYSPTS----PTSPRH------------YSPTSP----AQFNSPTSPSYSPASPNY 1671

Query: 1735 SPTSP--------------------------SYSPSSPTYSPSSPYNAGGGNPDYSPSSP 1768
            SP SP                          +YSP+SP++  S     G      SPS  
Sbjct: 1672 SPASPNLHGAAGATSPSYSPASPSWSPTSPEAYSPTSPSFQRS----PGNQQSPTSPSYS 1727

Query: 1769 QYSPSAGYSPSAPGYSPSSTSQYTPQTNRDD 1799
              SP+  +SP  PG   +S +QY+P +  +D
Sbjct: 1728 PTSPA--FSPRTPGPG-NSGNQYSPNSPSND 1755


>gi|413915244|gb|AFW21484.1| RNA polymerase II largest subunit [Claviceps paspali]
          Length = 1764

 Score = 1634 bits (4230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 873/1788 (48%), Positives = 1168/1788 (65%), Gaps = 146/1788 (8%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG++SP+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
             KC+TCT  M++CPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F  
Sbjct: 67   FKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            A+  R+ K R  ++   CK K +CE  D  +    D   G + +  N GGCG  QP++  
Sbjct: 127  AINTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDDDFAPGMKAVVNNHGGCGNVQPQVRQ 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNPKY 238
              +++ A +         QE  P+   R++T  +T E   G+LKRIS+ED + +GLN  Y
Sbjct: 187  AALQLKAAFDVV------QEDGPK---RRETVPITPEMAHGILKRISEEDLRHMGLNSDY 237

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+W+I+ V             +      +R  DDLT++L  IIR N N+++  R G+P
Sbjct: 238  ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG   A
Sbjct: 358  DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGH++++
Sbjct: 415  KYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHQVRV 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL +VP  IVSPQ N P+MG
Sbjct: 475  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSPQKNGPLMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQD+L G  K+ +RDTF++K++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ +++I
Sbjct: 535  IVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVI 594

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            PK+I+L    +     D   +   DT + I+ GELL G L KK +G++ G ++H+ + E+
Sbjct: 595  PKEISLHSPES-SGGQDNADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP+ A  FL   Q +V YWLL N  SIGIGDT+ D +T+E +   I   K  V  L  QA
Sbjct: 654  GPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVAKLTAQA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  +  +FENKV+  LN+ARD+AG++ Q+SL +SNN   M  +GSKGS IN
Sbjct: 714  TANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHA
Sbjct: 774  ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D++ 
Sbjct: 834  MAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLDAMC 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE Q L  LKM  + F+  +R ++    E +  +Y   EY ++L   KE  D+ D+E   
Sbjct: 894  IEKQKLGILKMSDAAFENKYRLDLANPPEWFKKDY---EYGNELAGDKESMDLLDSEWDA 950

Query: 944  LEADRYQLATEIATS--GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
            L  DR ++  E+  S  G+    LP+N+ R+I  A++ F V     S++ P++V+  +  
Sbjct: 951  LLNDR-RVVREVNRSKMGEEMMQLPLNIGRIIETAKRVFNVRATDRSNLRPVDVIPRIQN 1009

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L   LK+V G D +S+EA  NAT+ F  L+RS  A K ++K HRL + AF+ V+GE++SR
Sbjct: 1010 LLSNLKIVRGSDAISIEADSNATILFKALVRSRLAFKEIVKVHRLNKLAFDHVLGELQSR 1069

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            + +S V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK IK
Sbjct: 1070 WDRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIK 1129

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPS++V+L   +  T+E+AK ++  +EYT LRS+T  TE++YDPD  GT I ED++ V+S
Sbjct: 1130 TPSMAVYLNTHL-GTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTNIAEDMDMVES 1188

Query: 1182 YYEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
            Y+ +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+  DL  IF+D+NA
Sbjct: 1189 YFLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAVIFSDNNA 1248

Query: 1241 DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-------------- 1286
            D+ ++RIR +  ++ K E  ++  EDDV LK++E+++L  + LRGV              
Sbjct: 1249 DEQVIRIRTIRSDSQKDEEGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTRL 1308

Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                        L  V+  + VD  RT +N L +I+EV GIEA 
Sbjct: 1309 IVDEDGSEMAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIEAA 1368

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSFEE
Sbjct: 1369 RSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSFEE 1428

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEG 1439
            TV+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  ++L+ +ML+  I     +   G
Sbjct: 1429 TVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPKMLETVIS---DNSRMG 1485

Query: 1440 LEFGMTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPG 1497
            L  GM        G  TPY  G  SP    S  + ++      FSP  G  + +P     
Sbjct: 1486 LMPGMPVKDGEAEGAATPYDTG--SPMSNDSGYMSMNSPAAGNFSPIQGAGSETPAGFGT 1543

Query: 1498 Y----------------SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSP--GYSPTSPT 1539
                             SP S   + S    SPTSP +S    GYSP+SP  GYSPTSP 
Sbjct: 1544 EYGGGGFGGGGGMGTTMSPYSMRGATSPFSTSPTSP-FSTGMAGYSPSSPNAGYSPTSPL 1602

Query: 1540 YSPSSPGYSPTSPAYSPTSPS------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
                   Y+ +      +           PTSP+    SP+YSPTSPSYSPTSP    TS
Sbjct: 1603 LDGGVGRYASSPSFSPSSPSFSPTSPMLRPTSPA----SPNYSPTSPSYSPTSP----TS 1654

Query: 1594 P-SYSPTSPSY--SPTSPAYSPTSPAYSPTSPAYSPTSPS-----------YSPTSPSYS 1639
            P  YSPTSP+   SPTSP+YSP SP YSP SP       +              +  +YS
Sbjct: 1655 PRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGATSPSYSPASPSWSPTSPEAYS 1714

Query: 1640 PTSPSY--------SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
            PTSPS+        SPTSPSYSPTSP++SP +P    +   YSP SPS
Sbjct: 1715 PTSPSFQRSPGNQQSPTSPSYSPTSPAFSPRTPGPGNSGNQYSPNSPS 1762



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/185 (42%), Positives = 99/185 (53%), Gaps = 51/185 (27%)

Query: 1655 TSP-SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY------ 1707
            TSP S SPTSP +S    GYSP+SP+       YSPTSP  +    +Y+ S ++      
Sbjct: 1569 TSPFSTSPTSP-FSTGMAGYSPSSPNAG-----YSPTSPLLDGGVGRYASSPSFSPSSPS 1622

Query: 1708 -----------SPSSPRLSPASP-YSPTSP----NYSPTSSSY--SPTSPSYSPSSPTYS 1749
                       SP+SP  SP SP YSPTSP    +YSPTS +   SPTSPSYSP+SP YS
Sbjct: 1623 FSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYS 1682

Query: 1750 PSSPYNAGGG-----------------NPDYSPSSP--QYSPSAGYSPSAPGYSPSSTSQ 1790
            P+SP   G G                    YSP+SP  Q SP    SP++P YSP+S + 
Sbjct: 1683 PASPNLHGAGATSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPA- 1741

Query: 1791 YTPQT 1795
            ++P+T
Sbjct: 1742 FSPRT 1746


>gi|302927295|ref|XP_003054466.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256735407|gb|EEU48753.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1750

 Score = 1633 bits (4229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 897/1796 (49%), Positives = 1183/1796 (65%), Gaps = 167/1796 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKP--GGLSDPRLGTIDR 62
            F +S A +  V  +QFG++SP+EI+ MSV  I + ET E  K KP  GGL+DP LG+IDR
Sbjct: 6    FTHSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMEENKTKPRDGGLNDPLLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + +C+TCT  M ECPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F 
Sbjct: 66   QFRCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTRDPEFA 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK-------------- 168
             A+  R+PK R  ++ + CK K +C           D EEP +K++              
Sbjct: 126  AAIATRDPKVRFSRVWEVCKKKRRC-----------DNEEPKQKDEEFAPGMKLGPVEGH 174

Query: 169  GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISD 226
            GGCG  QP +    +++ A +    +            +R++T  +T E    +L+RI++
Sbjct: 175  GGCGNVQPNVRQAALQLKAAFDVVEEGGG---------KRRETTPITPEMAHNILRRITE 225

Query: 227  EDCQLLGLNPKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHN 273
            ED + +GLN  YARP+WM+L V             +      +R  DDLT++L  IIR N
Sbjct: 226  EDLRDMGLNSDYARPEWMVLTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRAN 285

Query: 274  ENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKE 333
             N+++  R G+PAHI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KE
Sbjct: 286  GNVKQAIREGSPAHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKE 345

Query: 334  GRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE 393
            GR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI RL + VE
Sbjct: 346  GRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGRLHQYVE 405

Query: 394  YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSL 453
             GP+  PG   AKY+IR DGQR+DLR+ +++    LE G+KVERHL DGD+++FNRQPSL
Sbjct: 406  NGPNEHPG---AKYVIRADGQRIDLRHHRRAGAISLEYGWKVERHLIDGDYIIFNRQPSL 462

Query: 454  HKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKC 513
            HK S+MGHR+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  
Sbjct: 463  HKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPLN 522

Query: 514  IVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRP 573
            IVSPQ N P+MGIVQD+L G  K+ +RDTF+ K+  MN ++W  ++DG +PQP ILKPRP
Sbjct: 523  IVSPQKNGPLMGIVQDSLAGVYKLCRRDTFLTKEQIMNSMLWVPNWDGVIPQPAILKPRP 582

Query: 574  LWTGKQVFNLIIPKQINLFRTAAWHAD---NDKGILTAGDTLVRIEKGELLSGTLCKKTL 630
             WTGKQ+ +++IPK++ L        D    D+GIL        I+ G+L+ G   KK +
Sbjct: 583  RWTGKQLISMVIPKEVTLHNGTDKKEDAPLKDEGIL--------IQAGQLMYGLPTKKIV 634

Query: 631  GTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDT 690
            G + G ++H+ + E+G + A  FL   Q +V YWLL N  SIGIGDTI D  T+E +   
Sbjct: 635  GAAAGGIVHISYNELGAEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTIPDKATIEKVQVH 694

Query: 691  ISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNN 750
            I + K  V  L   A    LE  PG  +  +FENKV+  LN ARD+AG++ QKSL +SNN
Sbjct: 695  IDEEKAEVARLTAMATANELEALPGMNVRATFENKVSMALNQARDKAGTTTQKSLKDSNN 754

Query: 751  LKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVEN 810
               M ++GSKGS INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVEN
Sbjct: 755  AVTMASSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVEN 814

Query: 811  SYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD 870
            SYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD
Sbjct: 815  SYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGD 874

Query: 871  VIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLK 928
            V+QFLYGEDG+D++ IE Q L  L M  + F   +R ++    E +  +Y   E+ ++L 
Sbjct: 875  VVQFLYGEDGLDAMCIEKQKLGILNMSNAAFKAKYRLDLANPPEWFKSDY---EFGNELT 931

Query: 929  TIKELRDVFDAEVQKLEADRYQL-ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP 987
              +    + D E + L  DR  +     A   +    LP+N+ R+I +A++ F V     
Sbjct: 932  GDRPSMALLDTEWEALLKDRRVIRQINKAKMNEEMMQLPLNITRIIESAKRVFNVKANDR 991

Query: 988  SDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLT 1047
            S++ P +V+ +V  L + +K+V G DP+SVEA  NAT+ F  LLRS  A K V+KEHRL 
Sbjct: 992  SNLRPSDVIPSVQNLLDHMKIVRGTDPISVEADANATILFKGLLRSRLAFKEVVKEHRLN 1051

Query: 1048 REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGV 1107
            + AF+ VIGE+++R+ ++ V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGV
Sbjct: 1052 KLAFDHVIGELQNRWDRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGV 1111

Query: 1108 PRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDP 1167
            PRL+EI+N+AK IKTPS++V+L   + + +E+AK ++  +EYT LRSVT  TE++YDPD 
Sbjct: 1112 PRLKEILNLAKNIKTPSMAVYLNTPL-ARQEQAKKLRSMVEYTNLRSVTAVTEIYYDPDI 1170

Query: 1168 MGTIIEEDVEFVKSYYEMPDE-DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQE 1226
              T I ED++ V+SY+ +PD+  ++ ++ S WLLRI L+R+ ++DK++ +  VA++I +E
Sbjct: 1171 QSTNIPEDMDMVESYFMIPDDTQVSIDQQSRWLLRITLDRQKLLDKEIRIDDVAQRIKEE 1230

Query: 1227 FDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV 1286
            +  DL  IF+D+NAD+ ++RIR ++    K E  +   EDDV LK++E+++L  + LRGV
Sbjct: 1231 YPTDLAVIFSDNNADEQVIRIRTVS-AGDKDEDGEGRMEDDVMLKRLEAHLLDTLTLRGV 1289

Query: 1287 N--------------------LLA---------------------VMCHEDVDARRTTSN 1305
            N                    LLA                     V+  + VDA RT +N
Sbjct: 1290 NGVERAFLTKGTRLVESPDGALLAIKDDPRCTQWYLDTSGSALRDVLAVDGVDASRTYTN 1349

Query: 1306 HLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1365
             L +++EV GIEA R AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGIN
Sbjct: 1350 DLWQVVEVFGIEAARSALVKELTNVLAFDGSYVNHRHIALLTDVMTYRGSISAVTRHGIN 1409

Query: 1366 RNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEML 1425
            R DTG +MRCSFEETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG+  + L+ +ML
Sbjct: 1410 RADTGALMRCSFEETVEILLEAAASGELDDCRGISENVMLGQMAPMGTGNFDVLLDPKML 1469

Query: 1426 KNAIELQLPSYMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYLFSPNLRLSPVTDAQF 1481
            +  I     +   GL  GM      + G  TPY  G  M   GYL      LS      F
Sbjct: 1470 ETVIS---DNSRMGLMPGMPVKGGEIEGAATPYDTGSPMADSGYL-----SLSSPAAGNF 1521

Query: 1482 SPYVGGMAFSPTSSPGYSPSSPGYSPSSP--------GYSPTSPGYSPTSP-----GYSP 1528
            SP  G  + +P    G+  +  G+  S+         G SP +   SPTSP     GYSP
Sbjct: 1522 SPIQGAGSDTPA---GFGNTEYGFGGSTAMSPYAMRGGTSPFTT--SPTSPFGPGGGYSP 1576

Query: 1529 TSP-GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1587
            TSP  YSPTSP       G   TSP++SP+SPS+SPTSP   PTSP+    SP+YSP+SP
Sbjct: 1577 TSPNAYSPTSPLVDGGMGGRYATSPSFSPSSPSFSPTSPMVRPTSPA----SPNYSPSSP 1632

Query: 1588 SYSPTSPS----YSPTSPSY--SPTSPAYSPTSPAYSPTSP---AYSPTSPSYSPTSPSY 1638
            +YSP SPS    YSPTSP+   SPTSP YSP SP YSP SP   A   TSPSYSP SP++
Sbjct: 1633 NYSPASPSSPRHYSPTSPAQFNSPTSPNYSPASPNYSPASPNLHAGGTTSPSYSPASPTW 1692

Query: 1639 SPTSP-SYSPTSP-------SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
            SPTSP +YSPTSP         SPTSPSYSPTSPA+SP +PG   +   YSP SP+
Sbjct: 1693 SPTSPEAYSPTSPYQRSPGAQQSPTSPSYSPTSPAFSPRTPGPGSSGNQYSPNSPS 1748



 Score =  117 bits (293), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 117/252 (46%), Positives = 149/252 (59%), Gaps = 31/252 (12%)

Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
            SP + ++SP   + S T   +  T   +   S + SP +     +  + SPTSP + P  
Sbjct: 1515 SPAAGNFSPIQGAGSDTPAGFGNTEYGFG-GSTAMSPYAMRGGTSPFTTSPTSP-FGPGG 1572

Query: 1615 PAYSPTSP-AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1673
              YSPTSP AYSPTSP           TSPS+SP+SPS+SPTSP   PTSPA    SP Y
Sbjct: 1573 -GYSPTSPNAYSPTSPLVDGGMGGRYATSPSFSPSSPSFSPTSPMVRPTSPA----SPNY 1627

Query: 1674 SPTSPSYSPTSPT----YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNY- 1727
            SP+SP+YSP SP+    YSPTSP      A+++     SP+SP  SPASP YSP SPN  
Sbjct: 1628 SPSSPNYSPASPSSPRHYSPTSP------AQFN-----SPTSPNYSPASPNYSPASPNLH 1676

Query: 1728 --SPTSSSYSPTSPSYSPSSP-TYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGY 1783
                TS SYSP SP++SP+SP  YSP+SPY    G    SP+SP YSP++  +SP  PG 
Sbjct: 1677 AGGTTSPSYSPASPTWSPTSPEAYSPTSPYQRSPG-AQQSPTSPSYSPTSPAFSPRTPGP 1735

Query: 1784 SPSSTSQYTPQT 1795
              SS +QY+P +
Sbjct: 1736 G-SSGNQYSPNS 1746


>gi|413915234|gb|AFW21479.1| RNA polymerase II largest subunit [Neotyphodium gansuense var.
            inebrians]
          Length = 1761

 Score = 1631 bits (4224), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 870/1775 (49%), Positives = 1155/1775 (65%), Gaps = 172/1775 (9%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG++SP+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
             KC+TCT  M++CPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F  
Sbjct: 67   FKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            A+  R+ K R  ++   CK K +CE  D  +   ++   G +P+  N GGCG  QP++  
Sbjct: 127  AIHTRDAKLRFNRVWAVCKKKRRCENEDHTEKNDEEFAPGMKPVVNNHGGCGNVQPQVRQ 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNPKY 238
              +++ A +         QE  P+   R++T  +T E   G+LKRIS+ED + +GLN  Y
Sbjct: 187  AALQLKAAFDVV------QEDGPK---RRETVPITPEMAHGILKRISEEDLRHMGLNSDY 237

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+W+I+ V             +      +R  DDLT++L  IIR N N+++  R G+P
Sbjct: 238  ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG   A
Sbjct: 358  DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR+++
Sbjct: 415  KYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRV 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N P+MG
Sbjct: 475  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGPLMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            +VQD+L G  KI +RDTFI+K++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ +++I
Sbjct: 535  VVQDSLAGAYKICRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVI 594

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            PK+I+L    +  A  D   +   DT + I+ GELL G L KK +G++ G ++H+ + E+
Sbjct: 595  PKEISLHSPES-SAGQDNADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GPD A  FL   Q +V YWLL N  SIGIGDT+ D +T+E +   I   K  V  L  QA
Sbjct: 654  GPDGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  +  +FENKV+  LN+ARD+AG++ Q+SL +SNN   M  +GSKGS IN
Sbjct: 714  TANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMADSGSKGSSIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHA
Sbjct: 774  ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D++ 
Sbjct: 834  MAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLDAMC 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE Q L  LKM  + F+  +R ++    E +  +Y   EY ++L   KE  D+ D+E   
Sbjct: 894  IEKQKLGILKMSDAAFETKYRLDLANPPEWFKKDY---EYGNELAGDKESMDLLDSEWDH 950

Query: 944  LEADRYQLATEIATS-GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            L  DR  +     T  G+    LP+N+ R+I  A++ F V     S++ P +V+  +  L
Sbjct: 951  LLNDRRIVRLINRTKMGEEMMQLPLNIGRIIETAKRVFNVRATDRSNLRPADVIPRIQTL 1010

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
               LK+V G DP+SVEA  NAT+ F  L+RS  A K ++K HRL + AF+ V+GE+++R+
Sbjct: 1011 LSDLKIVRGSDPISVEADDNATILFKALIRSRLAFKEIVKVHRLNKLAFDHVLGELQNRW 1070

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             +S V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK IKT
Sbjct: 1071 DRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIKT 1130

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS++V+L   +  T+E+AK ++  +EYT LRS+T  TE++YDPD   T I ED++ V+SY
Sbjct: 1131 PSMAVYLNTHL-GTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQSTSIVEDMDMVESY 1189

Query: 1183 YEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            + +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+  DL  IF+D+NAD
Sbjct: 1190 FLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDNNAD 1249

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            + ++RIR +  +  K E  ++  EDDV LK++E+++L  + LRGV               
Sbjct: 1250 EQVIRIRTIRADNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGIERAFLTKGTRLV 1309

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                       L  V+  + VD  RT +N L +++EV GIEA R
Sbjct: 1310 VDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQVVEVFGIEAAR 1369

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSFEET
Sbjct: 1370 SALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSFEET 1429

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  ++L+ +ML+  I     +   GL
Sbjct: 1430 VEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPKMLETVIS---DNSRMGL 1486

Query: 1441 EFGMTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPT----- 1493
              GM        G  TPY  G  SP    S  + +S      FSP  G  + +P      
Sbjct: 1487 MPGMPVKEGEAEGAATPYDTG--SPMSNDSGYMSMSSPAAGNFSPIQGAGSETPAGFGTE 1544

Query: 1494 -------SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSP--GYSPTSPTY---- 1540
                        SP S   + S    SPTSP  +  + GYSP+SP  GYSPTSP      
Sbjct: 1545 YGGGGFGGIGTMSPYSMRGATSPFSTSPTSPFGAGMAAGYSPSSPNAGYSPTSPLLDGGA 1604

Query: 1541 --------------------------SPSSPGYSPTSPAYSPTSPS----YSPTSPSY-- 1568
                                      SP+SP YSPTSP+Y PTSP+    YSPTSP+   
Sbjct: 1605 GRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYLPTSPTSPRHYSPTSPAQFN 1664

Query: 1569 SPTSPSYSPTSPSYSPTSP-------------------------SYSPTSPSY------- 1596
            SPTSPSYSP SP+YSP SP                         +YSPTSPS+       
Sbjct: 1665 SPTSPSYSPASPNYSPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQ 1724

Query: 1597 -SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
             SPTSPSYSPTSPA+SP +P    +   YSP SPS
Sbjct: 1725 QSPTSPSYSPTSPAFSPRTPGPGNSGNQYSPNSPS 1759



 Score =  117 bits (293), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/196 (44%), Positives = 103/196 (52%), Gaps = 39/196 (19%)

Query: 1599 TSP-SYSPTSPAYSPTSPAYSPTSP--AYSPTSPSYSPTSPSYSPTSPSY---------- 1645
            TSP S SPTSP  +  +  YSP+SP   YSPTSP     +  Y+ +              
Sbjct: 1565 TSPFSTSPTSPFGAGMAAGYSPSSPNAGYSPTSPLLDGGAGRYATSPSFSPSSPSFSPTS 1624

Query: 1646 ------SPTSPSYSPTSPSYSPTSPA----YSPTSPGY--SPTSPSYSPTSPTYSPTSPS 1693
                  SP SP+YSPTSPSY PTSP     YSPTSP    SPTSPSYSP SP YSP SP+
Sbjct: 1625 PMLRPTSPASPNYSPTSPSYLPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPN 1684

Query: 1694 YNPQSAKYSPSL------------AYSPSSPRL--SPASPYSPTSPNYSPTSSSYSPTSP 1739
             +                      AYSP+SP    SP +  SPTSP+YSPTS ++SP +P
Sbjct: 1685 LHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPAFSPRTP 1744

Query: 1740 SYSPSSPTYSPSSPYN 1755
                S   YSP+SP N
Sbjct: 1745 GPGNSGNQYSPNSPSN 1760



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 87/169 (51%), Gaps = 36/169 (21%)

Query: 1655 TSP-SYSPTSPAYSPTSPGYSPTSPS--YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS 1711
            TSP S SPTSP  +  + GYSP+SP+  YSPTSP     +  Y    +    S ++SP+S
Sbjct: 1565 TSPFSTSPTSPFGAGMAAGYSPSSPNAGYSPTSPLLDGGAGRYATSPSFSPSSPSFSPTS 1624

Query: 1712 PRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGG-GNPDYSPSSPQY 1770
            P L P SP    SPNYSPTS SY PTSP+   S   YSP+SP       +P YSP+SP Y
Sbjct: 1625 PMLRPTSP---ASPNYSPTSPSYLPTSPT---SPRHYSPTSPAQFNSPTSPSYSPASPNY 1678

Query: 1771 SPSA--------------------------GYSPSAPGYSPSSTSQYTP 1793
            SP++                           YSP++P +  S  +Q +P
Sbjct: 1679 SPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSP 1727


>gi|413915218|gb|AFW21471.1| RNA polymerase II largest subunit [Epichloe typhina]
          Length = 1746

 Score = 1631 bits (4224), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 866/1761 (49%), Positives = 1159/1761 (65%), Gaps = 159/1761 (9%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG++SP+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
            +KC+TCT  M++CPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F  
Sbjct: 67   LKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            A++ R+ K R  ++   CK K +CE  D  +   ++   G +P+  N GGCG  QP++  
Sbjct: 127  AIQTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKPVVNNHGGCGNVQPQVRQ 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNPKY 238
              +++ A +         QE  P+   R++T  +T E   G+LKRIS+ED + +GLN  Y
Sbjct: 187  AALQLKAAFDVV------QEDGPK---RRETVPITPEMAHGILKRISEEDLRQMGLNSDY 237

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+W+I+ V             +      +R  DDLT++L  IIR N N+++  R G+P
Sbjct: 238  ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG   A
Sbjct: 358  DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR+++
Sbjct: 415  KYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRV 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N P+MG
Sbjct: 475  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGPLMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            +VQD+L G  K+ +RDTF++K++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ +++I
Sbjct: 535  VVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVI 594

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            PK+I+L    +     D   +   DT + I+ GELL G L KK +G++ G ++H+ + E+
Sbjct: 595  PKEISLHSPES-SGGQDNADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP+ A  FL   Q +V YWLL N  SIGIGDT+ D +T+E +   I   K  V  L  QA
Sbjct: 654  GPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  +  +FENKV+  LN+ARD+AG++ Q+SL +SNN   M  +GSKGS IN
Sbjct: 714  TANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHA
Sbjct: 774  ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D++ 
Sbjct: 834  MAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLDAMC 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEM-DEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE Q L  LKM  + F+  +R ++ +  +W   +Y   EY ++L   KE  D+ D+E   
Sbjct: 894  IEKQKLGILKMSDAAFETKYRLDLANPPDWFKKDY---EYGNELAGDKESMDLLDSEWDH 950

Query: 944  LEADRYQLATEIATS-GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            L  DR  +     T  G+    LP+N+ R+I  A++ F V     S++ P +V+  +  L
Sbjct: 951  LLNDRRIVRLINRTKMGEEMMQLPLNIGRIIETAKRVFNVRATDRSNLRPADVIPRIQNL 1010

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
               LK+V G DP+S+EA ++AT+ F  L+RS  A K ++K HRL + AF+ V+GE+++R+
Sbjct: 1011 LSDLKIVRGSDPISIEADESATILFKALIRSRLAFKEIVKVHRLNKLAFDHVLGELQNRW 1070

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             ++ V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK IKT
Sbjct: 1071 DRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIKT 1130

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS++V+L   +  T+E+AK ++  +EYT LRS+T  TE++YDPD  GT I ED++ V+SY
Sbjct: 1131 PSMAVYLNTHL-GTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVESY 1189

Query: 1183 YEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            + +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+  DL  IF+D+NAD
Sbjct: 1190 FLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDNNAD 1249

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            + ++RIR +  +  K E  ++  EDDV LK++E+++L  + LRGV               
Sbjct: 1250 EQVIRIRTIRTDNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTRLV 1309

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                       L  V+  + VD  RT +N L +I+EV GIEA R
Sbjct: 1310 VDDDGAEIAKKDDEKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIEAAR 1369

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSFEET
Sbjct: 1370 SALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSFEET 1429

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  ++L+ +ML+  I     +   GL
Sbjct: 1430 VEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPKMLETVIS---DNSRMGL 1486

Query: 1441 EFGMTPARSPVSG--TPYHDGM-MS--PGYL---------FSPNLRLSPVTDAQFSPYVG 1486
              GM        G  TPY  G  MS   GY+         FSP       T   F PY+ 
Sbjct: 1487 MPGMPVKEGEAEGAATPYDTGSPMSNDSGYMSISSPAPGNFSPIQGAGSETPQGFGPYLT 1546

Query: 1487 GMAFSPTSSPGYSPSSPGYSPSSPGYSPTS--PGYSPTSPGYSPTSPGY----------- 1533
              A SP S+   SP+SP  +  +  YSP+S  PGYSPTSP     +  Y           
Sbjct: 1547 RRATSPFST---SPTSPFNANMADSYSPSSPNPGYSPTSPLLDGGAGRYATSPSFSPSSP 1603

Query: 1534 ------------SPTSPTYSPSSPGYSPTSPA----YSPTSPSY--SPTSPSYSPTSPSY 1575
                        SP SP YSP+SP YSPTSP     YSPTSP+   SPTSPSYSP SP+Y
Sbjct: 1604 SFSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNY 1663

Query: 1576 SPTSPSYSPTS------------------PSYSPTSPSY--------SPTSPSYSPTSPA 1609
            SP SP+                        +YSPTSPS+        SPTSPSYSPTSPA
Sbjct: 1664 SPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPA 1723

Query: 1610 YSPTSPAYSPTSPAYSPTSPS 1630
            +SP +P    +   YSP SPS
Sbjct: 1724 FSPRTPGPGNSGNQYSPNSPS 1744



 Score =  112 bits (280), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/270 (37%), Positives = 130/270 (48%), Gaps = 44/270 (16%)

Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1591
            G  P  P     + G +      SP S      S S SP   ++SP   + S T   + P
Sbjct: 1485 GLMPGMPVKEGEAEGAATPYDTGSPMSNDSGYMSIS-SPAPGNFSPIQGAGSETPQGFGP 1543

Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
                 + +  S SPTSP  +  + +YSP+SP     +P YSPTSP     +  Y+ +   
Sbjct: 1544 YLTRRATSPFSTSPTSPFNANMADSYSPSSP-----NPGYSPTSPLLDGGAGRYATSPSF 1598

Query: 1652 YSPTSPS------YSPTSPAYSPTSPGYSPTSPSYSPTSPT----YSPTSPSY--NPQSA 1699
               +           PTSPA    SP YSPTSPSYSPTSPT    YSPTSP+   +P S 
Sbjct: 1599 SPSSPSFSPTSPMLRPTSPA----SPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSP 1654

Query: 1700 KYSP-SLAYSPSSPRLSPAS-------------------PYSPTSPNYSPT-SSSYSPTS 1738
             YSP S  YSP+SP L  A                     YSPTSP++  +  +  SPTS
Sbjct: 1655 SYSPASPNYSPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTS 1714

Query: 1739 PSYSPSSPTYSPSSPYNAGGGNPDYSPSSP 1768
            PSYSP+SP +SP +P     GN  YSP+SP
Sbjct: 1715 PSYSPTSPAFSPRTPGPGNSGN-QYSPNSP 1743



 Score = 95.1 bits (235), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/214 (37%), Positives = 110/214 (51%), Gaps = 49/214 (22%)

Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
            SP   ++SP   + S T   + P     + +  S SPTSP  +  +  YSP+SP     +
Sbjct: 1521 SPAPGNFSPIQGAGSETPQGFGPYLTRRATSPFSTSPTSPFNANMADSYSPSSP-----N 1575

Query: 1685 PTYSPTSPSYNPQSAKYSPSLAY-----------------SPSSPRLSPASP-YSPTSP- 1725
            P YSPTSP  +  + +Y+ S ++                 SP+SP  SP SP YSPTSP 
Sbjct: 1576 PGYSPTSPLLDGGAGRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPT 1635

Query: 1726 ---NYSPTSSSY--SPTSPSYSPSSPTYSPSSPYNAGGGNPD-----------------Y 1763
               +YSPTS +   SPTSPSYSP+SP YSP+SP   G G                    Y
Sbjct: 1636 SPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGPTSPSYSPASPSWSPTSPEAY 1695

Query: 1764 SPSSP--QYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
            SP+SP  Q SP    SP++P YSP+S + ++P+T
Sbjct: 1696 SPTSPSFQRSPGNQQSPTSPSYSPTSPA-FSPRT 1728


>gi|448524734|ref|XP_003869005.1| Rpo21 protein [Candida orthopsilosis Co 90-125]
 gi|380353358|emb|CCG22868.1| Rpo21 protein [Candida orthopsilosis]
          Length = 1732

 Score = 1630 bits (4220), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 860/1585 (54%), Positives = 1101/1585 (69%), Gaps = 92/1585 (5%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLG 58
            M   FP+S A +  V+ VQFG+LSP+E+R +SV +IE+ ET ++   +P+ GGL+DPRLG
Sbjct: 1    MSRTFPFSNAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQATKRPREGGLNDPRLG 60

Query: 59   TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
            +IDR  KC+TC  +MAECPGHFGH+ELAKP+FHIGF+  +  +  S+C +C K+L DE +
Sbjct: 61   SIDRNFKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCESICMHCGKLLLDESN 120

Query: 119  HKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKN--KGGCGAQQP 176
                QA+KIR+PK R   +   CK K  CE            EE +  +  +GGCG  QP
Sbjct: 121  PLMAQAIKIRDPKKRFNAVWSICKTKMVCETAT--------SEEEMNDHPTRGGCGHTQP 172

Query: 177  KLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
             +  +G+K+   +K    KN ++   PE    ++ LT   +L V K IS EDC  LG N 
Sbjct: 173  TIRRDGLKLWGTWK--HNKNFEENDQPE----RRLLTPSEILNVFKHISPEDCYRLGFNE 226

Query: 237  KYARPDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
             YARP+WM++ VLP+PPP            R  DDLT +LA II+ N N++R E +G+P 
Sbjct: 227  DYARPEWMLITVLPVPPPPVRPSIAFNDTARGEDDLTFKLADIIKANINVQRLEIDGSPQ 286

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            H+ISEF  LLQFH+ATY DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVD
Sbjct: 287  HVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVD 346

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVI+ DP +++DQ+GVP SIA  LTYPE VTPYNI +L ELV  GP+  PG   AK
Sbjct: 347  FSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPG---AK 403

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            Y+IRD G R+DLRY K++ D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+M
Sbjct: 404  YVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVM 463

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            PYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETR+E+ ++  VP  IVSPQSN+PVMGI
Sbjct: 464  PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNKPVMGI 523

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDTL G RK+T RD FIE D  MN+  W  ++DG +P P I+KP+PLW+GKQ+ ++ IP
Sbjct: 524  VQDTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAIIKPKPLWSGKQILSMAIP 583

Query: 587  KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            K I++ R      D  + +L+A DT + I  GE++ G + KKT+G + G LIH +  E G
Sbjct: 584  KGIHIQR-----FDGGRDLLSAKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKG 638

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
            P    +     Q +VN+WLL N FSIGIGDTIADA TM+ I  TI +AK  V+ +I  AQ
Sbjct: 639  PQVCAQLFSSIQKVVNFWLLHNGFSIGIGDTIADASTMKDITKTIQEAKQKVQEIILDAQ 698

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
               L+PEPG T+ ESFE+ V++VLN ARD AG SA+ SL + NN+K MVT+GSKGSFINI
Sbjct: 699  HNKLDPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINI 758

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQM+ACVGQQ VEGKRIPFGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM
Sbjct: 759  SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 818

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
             GREGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D+  +
Sbjct: 819  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGVDATQV 878

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E Q++D++      F++ +R ++ EEN + +  L E   +++   +L+ + D E  +L  
Sbjct: 879  EKQSVDTIPGSDESFERRYRIDLLEENGSISESLLESGKEIQGDVKLQKLLDEEYNQLLE 938

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L      +GD SWPLPVNL+R+I NAQ+ F     + SD+   E+V  V  L  +L
Sbjct: 939  DRRYLRDVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYKASDLKLDEIVNGVRDLCTKL 998

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             VV G   L+ EAQ+NATL F  L+RS  AS+RV++E +L R +F+WV+GEIE++F +S+
Sbjct: 999  LVVRGNTKLAKEAQENATLLFQCLVRSRLASRRVIEEFKLNRSSFDWVLGEIETQFQKSI 1058

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
            V PGEM+G VAAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTP+L+
Sbjct: 1059 VHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALT 1118

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            V+L P V S  E AK VQ ++E+TTL++VT +TE++YDPDP  T+IEED + V++Y+ +P
Sbjct: 1119 VYLDPEVASDIELAKIVQSSIEHTTLKNVTSSTEIYYDPDPRTTVIEEDYDTVEAYFAIP 1178

Query: 1187 DEDI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            D+ +  + EK SPWLLR+EL+R  M+DK+L+MA VAEKI+Q F +DL  I++DD ADKLI
Sbjct: 1179 DQKVEESIEKQSPWLLRLELDRAKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLI 1238

Query: 1245 LRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------------- 1284
            +R R++ D  PK    D  AE+D  LK+IE++ML  ++LR                    
Sbjct: 1239 IRCRVVRD--PKTLDEDADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVSKPDE 1296

Query: 1285 ---------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
                           GVNL  VM    VD+ RT SN  IEI+ VLGIEA R AL  E+  
Sbjct: 1297 TGEFKQGKEWVLETDGVNLADVMAVPGVDSTRTYSNDFIEILSVLGIEATRSALYKEILN 1356

Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
            VI+FDGSYVNYRH+A+L D MT RGHLMAITRHGINR+DTG +MRCSFEETV+ILLDAA 
Sbjct: 1357 VIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAA 1416

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARS 1449
             AE D  +G++EN+MLGQ+AP+GTG   + ++D+ML+ A     P+        M     
Sbjct: 1417 AAELDDCKGISENVMLGQMAPLGTGAFDVMVDDKMLQQA-----PA-----NVAMEVIAE 1466

Query: 1450 PVSGTPYHDGMMSPGYL-FSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPS 1508
                TPY +  M    +    +   SP+  A   P   GM    TS  G  P+SP  S +
Sbjct: 1467 DGGATPYREAEMQDDRIQIDESAGFSPIHQA---PTSDGMNGGLTSYGG-QPTSP--SAT 1520

Query: 1509 SPGYSPTSPGYSPTSPGYSPTSPGY 1533
            SP    TSP Y  TSP Y  TSPGY
Sbjct: 1521 SPFSYSTSPSYGGTSPAYGGTSPGY 1545



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 34/62 (54%), Gaps = 6/62 (9%)

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1601
            S G+SP   A  PTS   +    SY   PTSP  S TSP    TSPSY  TSP+Y  TSP
Sbjct: 1488 SAGFSPIHQA--PTSDGMNGGLTSYGGQPTSP--SATSPFSYSTSPSYGGTSPAYGGTSP 1543

Query: 1602 SY 1603
             Y
Sbjct: 1544 GY 1545


>gi|413915248|gb|AFW21486.1| RNA polymerase II largest subunit [Neotyphodium aotearoae]
          Length = 1737

 Score = 1628 bits (4216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 862/1749 (49%), Positives = 1156/1749 (66%), Gaps = 163/1749 (9%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG++SP+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
            +KC+TCT  M++CPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F  
Sbjct: 67   LKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            A++ R+ K R  ++   CK K +CE  D  +   ++   G +P+  N GGCG  QP++  
Sbjct: 127  AIQTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKPVVNNHGGCGNVQPQVRQ 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNPKY 238
              +++ A +         QE  P+   R++T  +T E   G+LKRIS+ED + +GLN  Y
Sbjct: 187  AALQLKAAFDVV------QEDGPK---RRETVPITPEMAHGILKRISEEDLRQMGLNSDY 237

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+W+I+ V             +      +R  DDLT++L  IIR N N+++  R G+P
Sbjct: 238  ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG   A
Sbjct: 358  DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR+++
Sbjct: 415  KYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRV 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N P+MG
Sbjct: 475  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGPLMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            +VQD+L G  K+ +RDTF++K++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ +++I
Sbjct: 535  VVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVI 594

Query: 586  PKQINLF--RTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            PK+I+L    ++  H + D   +   DT + I+ GELL G L KK +G++ G ++H+ + 
Sbjct: 595  PKEISLHSPESSGGHDNAD---IPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYN 651

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
            E+GP+ A  FL   Q +V YWLL N  SIGIGDT+ D +T+E +   I   K  V  L  
Sbjct: 652  ELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTA 711

Query: 704  QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
            QA    LE  PG  +  +FENKV+  LN+ARD+AG++ Q+SL +SNN   M  +GSKGS 
Sbjct: 712  QATANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSS 771

Query: 764  INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
            INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFF
Sbjct: 772  INISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFF 831

Query: 824  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
            HAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D+
Sbjct: 832  HAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLDA 891

Query: 884  VWIESQTLDSLKMKKSEFDKAFRFEM-DEENW-NPNYMLQEYIDDLKTIKELRDVFDAEV 941
            + IE Q L  LKM  + F+  +R ++ +  +W   +Y   EY ++L   KE  D+ D+E 
Sbjct: 892  MCIEKQKLGILKMSDAAFETKYRLDLANPPDWFKKDY---EYGNELAGDKESMDLLDSEW 948

Query: 942  QKLEADRYQLATEIATS-GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
              L  DR  +     T  G+    LP+N+ R+I  A++ F V     S++ P +V+  + 
Sbjct: 949  DHLLNDRRMVRLINRTKMGEEMMQLPLNIGRIIETAKRVFNVRATDRSNLRPADVIPRIQ 1008

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L   LK+V G DP+S+EA ++AT+ F  L+RS  A K ++K HRL + AF+ V+GE+++
Sbjct: 1009 NLLSDLKIVRGSDPISIEADESATILFKALIRSRLAFKEIVKVHRLNKLAFDHVLGELQN 1068

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            R+ ++ V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK I
Sbjct: 1069 RWDRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDI 1128

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            KTPS++V+L   +  T+E+AK ++  +EYT LRS+T  TE++YDPD  GT I ED++ V+
Sbjct: 1129 KTPSMAVYLNTHL-GTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVE 1187

Query: 1181 SYYEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
            SY+ +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+  DL  IF+D+N
Sbjct: 1188 SYFLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDNN 1247

Query: 1240 ADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------------- 1286
            AD+ ++RIR +  +  K E  ++  EDDV LK++E+++L  + LRGV             
Sbjct: 1248 ADEQVIRIRTIRTDNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTR 1307

Query: 1287 ----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEA 1318
                                         L  V+  + VD  RT +N L +I+EV GIEA
Sbjct: 1308 LVVDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIEA 1367

Query: 1319 VRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE 1378
             R AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSFE
Sbjct: 1368 ARSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSFE 1427

Query: 1379 ETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME 1438
            ETV+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  ++L+ +ML+  I     +   
Sbjct: 1428 ETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPKMLETVIS---DNSRM 1484

Query: 1439 GLEFGMTPARSPVSG--TPYHDGM-MS--PGYL---------FSPNLRLSPVTDAQFSPY 1484
            GL  GM        G  TPY  G  MS   GY+         FSP       T   F PY
Sbjct: 1485 GLMPGMPVKEGEAEGAATPYDTGSPMSNDSGYMSISSPAAGNFSPIQGAGSETPTGFGPY 1544

Query: 1485 VGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSP--GYSPTSPGYSPTSPGY--------- 1533
            +   A SP S+   SP+SP  +  + GYSP+SP  GYSPTSP     +  Y         
Sbjct: 1545 LTRGATSPFST---SPTSPFNAGMAVGYSPSSPNAGYSPTSPLLDGGAGRYATSPSFSPS 1601

Query: 1534 --------------SPTSPTYSPSSPGYSPTSPA----YSPTSPSY--SPTSPSYSPTSP 1573
                          SP SP YSP+SP YSPTSP     YSPTSP+   SPTSPSYSP SP
Sbjct: 1602 SPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASP 1661

Query: 1574 SYSPTSPSYSPTS------------------PSYSPTSPSY--------SPTSPSYSPTS 1607
            +YSP SP+                        +YSPTSPS+        SPTSPSYSPTS
Sbjct: 1662 NYSPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTS 1721

Query: 1608 PAYSPTSPA 1616
            PA+SP +P 
Sbjct: 1722 PAFSPRTPG 1730



 Score =  107 bits (266), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 96/258 (37%), Positives = 123/258 (47%), Gaps = 35/258 (13%)

Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1591
            G  P  P     + G +      SP S      S S SP + ++SP   + S T   + P
Sbjct: 1485 GLMPGMPVKEGEAEGAATPYDTGSPMSNDSGYMSIS-SPAAGNFSPIQGAGSETPTGFGP 1543

Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP--AYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
                 + +  S SPTSP  +  +  YSP+SP   YSPTSP     +  Y+ +      + 
Sbjct: 1544 YLTRGATSPFSTSPTSPFNAGMAVGYSPSSPNAGYSPTSPLLDGGAGRYATSPSFSPSSP 1603

Query: 1650 PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT----YSPTSPSY--NPQSAKYSP 1703
                 +     PTSPA    SP YSPTSPSYSPTSPT    YSPTSP+   +P S  YSP
Sbjct: 1604 SFSPTSP-MLRPTSPA----SPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSP 1658

Query: 1704 -SLAYSPSSPRLSPAS-------------------PYSPTSPNYSPT-SSSYSPTSPSYS 1742
             S  YSP+SP L  A                     YSPTSP++  +  +  SPTSPSYS
Sbjct: 1659 ASPNYSPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYS 1718

Query: 1743 PSSPTYSPSSPYNAGGGN 1760
            P+SP +SP +P     GN
Sbjct: 1719 PTSPAFSPRTPGPGNSGN 1736



 Score = 94.7 bits (234), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 83/211 (39%), Positives = 111/211 (52%), Gaps = 50/211 (23%)

Query: 1632 SPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT--Y 1687
            SP + ++SP   + S T   + P  T  + SP S   SPTSP  +  +  YSP+SP   Y
Sbjct: 1521 SPAAGNFSPIQGAGSETPTGFGPYLTRGATSPFST--SPTSPFNAGMAVGYSPSSPNAGY 1578

Query: 1688 SPTSPSYNPQSAKYSPSLAY-----------------SPSSPRLSPASP-YSPTSP---- 1725
            SPTSP  +  + +Y+ S ++                 SP+SP  SP SP YSPTSP    
Sbjct: 1579 SPTSPLLDGGAGRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPR 1638

Query: 1726 NYSPTSSSY--SPTSPSYSPSSPTYSPSSPYNAGGGNPD-----------------YSPS 1766
            +YSPTS +   SPTSPSYSP+SP YSP+SP   G G                    YSP+
Sbjct: 1639 HYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPT 1698

Query: 1767 SP--QYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
            SP  Q SP    SP++P YSP+S + ++P+T
Sbjct: 1699 SPSFQRSPGNQQSPTSPSYSPTSPA-FSPRT 1728


>gi|413915222|gb|AFW21473.1| RNA polymerase II largest subunit [Epichloe glyceriae]
          Length = 1761

 Score = 1627 bits (4212), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 864/1775 (48%), Positives = 1156/1775 (65%), Gaps = 172/1775 (9%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG++SP+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
            +KC+TCT  M++CPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F  
Sbjct: 67   LKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            A++ R+ K R  ++   CK K +CE  D  +   ++   G + +  N GGCG  QP++  
Sbjct: 127  AIQTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKSVVNNHGGCGNVQPQVRQ 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNPKY 238
              +++ A +         QE  P+   R++T  +T E   G+LKRIS+ED + +GLN  Y
Sbjct: 187  AALQLKAAFDVV------QEDGPK---RRETVPITPEMAHGILKRISEEDLRQMGLNSDY 237

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+W+I+ V             +      +R  DDLT++L  IIR N N+++  R G+P
Sbjct: 238  ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT D  I++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG   A
Sbjct: 358  DFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR+++
Sbjct: 415  KYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRV 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N P+MG
Sbjct: 475  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGPLMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            +VQD+L G  K+ +RDTF++K++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ +++I
Sbjct: 535  VVQDSLAGAYKLCRRDTFVDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVI 594

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            PK+I+L    +     D   +   DT + I+ GELL G L KK +G++ G ++H+ + E+
Sbjct: 595  PKEISLHSPES-SGGQDNADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP+ A  FL   Q +V YWLL N  SIGIGDT+ D +T+E +   I   K  V  L  QA
Sbjct: 654  GPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  +  +FENKV+  LN+ARD+AG++ Q+SL +SNN   M  +GSKGS IN
Sbjct: 714  TANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHA
Sbjct: 774  ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D++ 
Sbjct: 834  MAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLDAMC 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEM-DEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE Q L  LKM  + F+  +R ++ +  +W   +Y   EY ++L   KE  D+ D+E   
Sbjct: 894  IEKQKLGILKMSDAAFETKYRLDLANPPDWFKKDY---EYGNELAGDKESMDLLDSEWDN 950

Query: 944  LEADRYQLATEIATS-GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            L  DR  +     T  G+    LP+N+ R+I  A++ F V     S++ P +V+  +  L
Sbjct: 951  LLNDRRIVRLINRTKMGEEMMQLPLNIGRIIETAKRVFNVRATDRSNLRPADVIPRIQNL 1010

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
               LK+V G DP+S+EA ++AT+ F  L+RS  A K ++K HRL + AF+ V+GE+++R+
Sbjct: 1011 LSDLKIVRGSDPISIEADESATILFKALIRSRLAFKEIVKVHRLNKLAFDHVLGELQNRW 1070

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             +S V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK IKT
Sbjct: 1071 DRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIKT 1130

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS++V+L   +  T+E+AK ++  +EYT LRS+T  TE++YDPD  GT I ED++ V+SY
Sbjct: 1131 PSMAVYLNTHL-GTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVESY 1189

Query: 1183 YEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            + +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+  DL  IF+D+NAD
Sbjct: 1190 FLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDNNAD 1249

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            + ++RIR +  +  K E  ++  EDDV LK++E+++L  + LRGV               
Sbjct: 1250 EQVIRIRTIRTDNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTRLV 1309

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                       L  V+  + VD  RT +N L +I+EV GIEA R
Sbjct: 1310 EDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIEAAR 1369

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSFEET
Sbjct: 1370 SALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSFEET 1429

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  ++L+ +ML+  I     +   GL
Sbjct: 1430 VEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPKMLETVIS---DNSRMGL 1486

Query: 1441 EFGMTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSP------ 1492
              GM        G  TPY  G  SP    S  + +S      FSP  G  + +P      
Sbjct: 1487 MPGMPVKEGEAEGAATPYDTG--SPMSNDSGYMSVSSPAAGNFSPIQGAGSETPAGFGTE 1544

Query: 1493 --------------------TSSPGYSPSSPGYSPSSPGYSPTSP--GYSPTSPGYSPTS 1530
                                TS    SP+SP  +  + GYSP+SP  GYSPTSP     +
Sbjct: 1545 YGGGGFGGIGSMSPYSMRGATSPFSTSPTSPFSAGMAAGYSPSSPNAGYSPTSPLLDGGA 1604

Query: 1531 PGY-----------------------SPTSPTYSPSSPGYSPTSPA----YSPTSPSY-- 1561
              Y                       SP SP YSP+SP YSPTSP     YSPTSP+   
Sbjct: 1605 GRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFN 1664

Query: 1562 SPTSPSYSPTSPSYSPTSP-------------------------SYSPTSPSYSPT-SPS 1595
            SPTSPSYSP SP+YSP SP                         +YSPTSPS+  +    
Sbjct: 1665 SPTSPSYSPASPNYSPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQ 1724

Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
             SPTSPSYSPTSPA+SP +P    +   YSP SPS
Sbjct: 1725 QSPTSPSYSPTSPAFSPRTPGPGNSGNQYSPNSPS 1759



 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 102/277 (36%), Positives = 127/277 (45%), Gaps = 54/277 (19%)

Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYS 1590
            G  P  P     + G +      SP S      S S SP + ++SP   + S T +   +
Sbjct: 1485 GLMPGMPVKEGEAEGAATPYDTGSPMSNDSGYMSVS-SPAAGNFSPIQGAGSETPAGFGT 1543

Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS--YSPTSPSY--- 1645
                       S SP S   + +  + SPTSP  +  +  YSP+SP+  YSPTSP     
Sbjct: 1544 EYGGGGFGGIGSMSPYSMRGATSPFSTSPTSPFSAGMAAGYSPSSPNAGYSPTSPLLDGG 1603

Query: 1646 ---------------------------SPTSPSYSPTSPSYSPTSPA----YSPTSPGY- 1673
                                       SP SP+YSPTSPSYSPTSP     YSPTSP   
Sbjct: 1604 AGRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQF 1663

Query: 1674 -SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSL------------AYSPSSPRL--SPAS 1718
             SPTSPSYSP SP YSP SP+ +                      AYSP+SP    SP +
Sbjct: 1664 NSPTSPSYSPASPNYSPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGN 1723

Query: 1719 PYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYN 1755
              SPTSP+YSPTS ++SP +P    S   YSP+SP N
Sbjct: 1724 QQSPTSPSYSPTSPAFSPRTPGPGNSGNQYSPNSPSN 1760



 Score = 77.0 bits (188), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 76/213 (35%), Positives = 102/213 (47%), Gaps = 36/213 (16%)

Query: 1611 SPTSPAYSPTSPAYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1669
            SP +  +SP   A S T +   +           S SP S   + +  S SPTSP  +  
Sbjct: 1521 SPAAGNFSPIQGAGSETPAGFGTEYGGGGFGGIGSMSPYSMRGATSPFSTSPTSPFSAGM 1580

Query: 1670 SPGYSPTSPS--YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY 1727
            + GYSP+SP+  YSPTSP     +  Y    +    S ++SP+SP L P SP    SPNY
Sbjct: 1581 AAGYSPSSPNAGYSPTSPLLDGGAGRYATSPSFSPSSPSFSPTSPMLRPTSP---ASPNY 1637

Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGG-GNPDYSPSSPQYSPSA------------ 1774
            SPTS SYSPTSP+   S   YSP+SP       +P YSP+SP YSP++            
Sbjct: 1638 SPTSPSYSPTSPT---SPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGPTSPS 1694

Query: 1775 --------------GYSPSAPGYSPSSTSQYTP 1793
                           YSP++P +  S  +Q +P
Sbjct: 1695 YSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSP 1727


>gi|413915230|gb|AFW21477.1| RNA polymerase II largest subunit [Epichloe festucae]
          Length = 1756

 Score = 1625 bits (4209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 867/1768 (49%), Positives = 1157/1768 (65%), Gaps = 170/1768 (9%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG++SP+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMDETRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
            +KC+TCT  M++CPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F  
Sbjct: 67   LKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVS 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            A++ R+ K R  ++   CK K +CE  D  +   ++   G +PL  N GGCG  QP++  
Sbjct: 127  AIQTRDAKLRFNRVWAVCKKKRRCENEDRTEKNDEEFAPGMKPLVNNHGGCGNVQPQVRQ 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNPKY 238
              +++ A +         QE  P+   R++T  +T E   G+LKRIS+ED + +GLN  Y
Sbjct: 187  AALQLKAAFDVV------QEDGPK---RRETVPITPEMAHGILKRISEEDLRRMGLNSDY 237

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+W+I+ V             +      +R  DDLT++L  IIR N N+++  R G+P
Sbjct: 238  ARPEWLIITVLPVPPPPVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG   A
Sbjct: 358  DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR+++
Sbjct: 415  KYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRV 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N P+MG
Sbjct: 475  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGPLMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            +VQD+L G  K+ +RDTFI+K++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ +++I
Sbjct: 535  VVQDSLAGAYKLCRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVI 594

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            PK+I+L    +     D   +   DT + I+ GELL G L KK +G++ G ++H+ + E+
Sbjct: 595  PKEISLHSPES-SGGQDNADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP+ A  FL   Q +V YWLL N  SIGIGDT+ D +T+E +   I   K  V  L  QA
Sbjct: 654  GPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  +  +FENKV+  LN+ARD+AG++ Q+SL +SNN   M  +GSKGS IN
Sbjct: 714  TANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHA
Sbjct: 774  ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D++ 
Sbjct: 834  MAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIIQFLYGEDGLDAMC 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEM-DEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE Q L  LKM  + F+  +R ++ +  +W   +Y   EY ++L   KE  D+ D+E   
Sbjct: 894  IEKQKLGILKMSDAAFETKYRLDLANPPDWFKKDY---EYGNELAGDKESMDLLDSEWDH 950

Query: 944  LEADRYQLATEIATS-GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            L  DR  +     T  G+    LP+N+ R+I  A++ F V     S++ P +V+  +  L
Sbjct: 951  LLNDRRIVRLINRTKMGEEMMQLPLNIGRIIETAKRVFNVRATDRSNLRPADVIPRIQNL 1010

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
               LK+V G DP+S+EA ++AT+ F  L+RS  A K ++K HRL + AF+ V+GE+++R+
Sbjct: 1011 LSDLKIVRGSDPISIEADESATILFKALIRSRLAFKEIVKVHRLNKLAFDHVLGELQNRW 1070

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             +S V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK IKT
Sbjct: 1071 DRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIKT 1130

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS++V+L   +  T+E+AK ++  +EYT LRS+T  TE++YDPD  GT I ED++ V+SY
Sbjct: 1131 PSMAVYLNTHL-GTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIVEDMDMVESY 1189

Query: 1183 YEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            + +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+  DL  IF+D+NAD
Sbjct: 1190 FLIPDDSQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAIIFSDNNAD 1249

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            + ++RIR +  +  K E  ++  EDDV LK++E+++L  + LRGV               
Sbjct: 1250 EQVIRIRTIRTDNEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTRLV 1309

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                       L  V+  + VD  RT +N L +I+EV GIEA R
Sbjct: 1310 VDDDGAEIAKKDDDKCTQWYLDTSGSALRDVLAVDGVDPTRTYTNDLWQIVEVFGIEAAR 1369

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSFEET
Sbjct: 1370 SALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGTISAVTRHGINRADTGALMRCSFEET 1429

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  ++L+ +ML+  I     +   GL
Sbjct: 1430 VEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVFLDPKMLETVIS---DNSRMGL 1486

Query: 1441 EFGMTPARSPVSG--TPYHDGM-MS--PGYL---------FSPNLRLSPVTDAQFSPYVG 1486
              GM        G  TPY  G  MS   GY+         FSP       T A F+    
Sbjct: 1487 MPGMPVKEGEAEGAATPYDTGSPMSNDSGYMSISSPAAGNFSPIQGAGSETQAGFNTEYD 1546

Query: 1487 GMA-FSPTSSPGYSPS-------------SPGYSPSSP--GYSPTSPGYSPTSPGY---- 1526
            G+A  SP S  G +               + GYSPSSP  GYSPTSP     +  Y    
Sbjct: 1547 GIAPISPYSMRGPTSPFSSSPTSPFGAGMAAGYSPSSPNAGYSPTSPLLDGGAGRYATSP 1606

Query: 1527 -------------------SPTSPGYSPTSPTYSPSSP----GYSPTSPAY--SPTSPSY 1561
                               SP SP YSPTSP+YSP+SP     YSPTSPA   SPTSPSY
Sbjct: 1607 SFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSY 1666

Query: 1562 SPTSPSYSPTSPSYSPTS------------------PSYSPTSPSY--------SPTSPS 1595
            SP SP+YSP SP+                        +YSPTSPS+        SPTSPS
Sbjct: 1667 SPASPNYSPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPS 1726

Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
            YSPTSP++SP +P    +   YSP SP+
Sbjct: 1727 YSPTSPAFSPRTPGPGNSGNQYSPNSPS 1754



 Score =  100 bits (250), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 107/287 (37%), Positives = 135/287 (47%), Gaps = 68/287 (23%)

Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1591
            G  P  P     + G +      SP S      S S SP + ++SP   + S T   ++ 
Sbjct: 1485 GLMPGMPVKEGEAEGAATPYDTGSPMSNDSGYMSIS-SPAAGNFSPIQGAGSETQAGFNT 1543

Query: 1592 TSPSYSPTSPSYS----PTSPAYSPTSPAYSPTSPAYSPTSPS--YSPTSPSYSPTSPSY 1645
                 +P SP YS     +  + SPTSP  +  +  YSP+SP+  YSPTSP     +  Y
Sbjct: 1544 EYDGIAPISP-YSMRGPTSPFSSSPTSPFGAGMAAGYSPSSPNAGYSPTSPLLDGGAGRY 1602

Query: 1646 SPTSPSYSPTSPS------YSPTSPAYSPTSPGYSPTSPSYSPTSPT----YSPTSPSYN 1695
            + +      +           PTSPA    SP YSPTSPSYSPTSPT    YSPTSP   
Sbjct: 1603 ATSPSFSPSSPSFSPTSPMLRPTSPA----SPNYSPTSPSYSPTSPTSPRHYSPTSP--- 1655

Query: 1696 PQSAKYSPSLAYSPSSPRLSPASP-YSPTSPN-------------------------YSP 1729
               A+++     SP+SP  SPASP YSP SPN                         YSP
Sbjct: 1656 ---AQFN-----SPTSPSYSPASPNYSPASPNLHGAGPTSPSYSPASPSWSPTSPEAYSP 1707

Query: 1730 TSSSY--------SPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP 1768
            TS S+        SPTSPSYSP+SP +SP +P     GN  YSP+SP
Sbjct: 1708 TSPSFQRSPGNQQSPTSPSYSPTSPAFSPRTPGPGNSGN-QYSPNSP 1753



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 77/217 (35%), Positives = 103/217 (47%), Gaps = 49/217 (22%)

Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
            SP +  +SP   A S T   ++      +P SP YS   P+   +S   SP     +   
Sbjct: 1521 SPAAGNFSPIQGAGSETQAGFNTEYDGIAPISP-YSMRGPTSPFSSSPTSPFGAGMAA-- 1577

Query: 1671 PGYSPTSPS--YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYS 1728
             GYSP+SP+  YSPTSP     +  Y    +    S ++SP+SP L P SP    SPNYS
Sbjct: 1578 -GYSPSSPNAGYSPTSPLLDGGAGRYATSPSFSPSSPSFSPTSPMLRPTSP---ASPNYS 1633

Query: 1729 PTSSSYSPTSPS----YSPSSPTY--SPSSPYNAGGGNPDYSPSSPQYSPSA-------- 1774
            PTS SYSPTSP+    YSP+SP    SP+SP         YSP+SP YSP++        
Sbjct: 1634 PTSPSYSPTSPTSPRHYSPTSPAQFNSPTSP--------SYSPASPNYSPASPNLHGAGP 1685

Query: 1775 ------------------GYSPSAPGYSPSSTSQYTP 1793
                               YSP++P +  S  +Q +P
Sbjct: 1686 TSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSP 1722


>gi|241959608|ref|XP_002422523.1| DNA-directed RNA polymerase II subunit, putative [Candida
            dubliniensis CD36]
 gi|223645868|emb|CAX40531.1| DNA-directed RNA polymerase II subunit, putative [Candida
            dubliniensis CD36]
          Length = 1735

 Score = 1625 bits (4208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 859/1583 (54%), Positives = 1102/1583 (69%), Gaps = 99/1583 (6%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLG 58
            M  +FPYS A +  V+ VQFG+LSP+E+R +SV +IE+ ET ++   +P+ GGL+DPRLG
Sbjct: 1    MSRQFPYSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQTTKRPREGGLNDPRLG 60

Query: 59   TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
            +IDR  +C+TC  +MAECPGHFGH+ELAKP+FHIGF+  +     SVC +C K+L DE +
Sbjct: 61   SIDRNFRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACESVCMHCGKLLLDETN 120

Query: 119  HKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKL 178
                QA+KIR+PK R   +   CK+K  CE  +  D      E   + ++GGCG  QP +
Sbjct: 121  PAMAQAIKIRDPKKRFNAVWSLCKSKMVCETDNNED------EMTDQPSRGGCGHPQPTI 174

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              +G+K+   +K Q K  DD EQ PE    ++ LT   +L V K IS EDC  +G N  Y
Sbjct: 175  RRDGLKLWGTWK-QNKNYDDNEQ-PE----RRLLTPSEILNVFKHISPEDCHKMGFNEDY 228

Query: 239  ARPDWMILQVLPIPP----------PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            ARP+WM++ VLP+PP             R  DDLT +LA II+ N N++R E +G+P H+
Sbjct: 229  ARPEWMLITVLPVPPPPVRPSIAFNETARGEDDLTFKLADIIKANINVQRLETDGSPQHV 288

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ISEF  LLQFH+ATY DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFS
Sbjct: 289  ISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFS 348

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVI+ DP +++DQ+GVP SIA  LTYPE VTPYNI +L ELV  GP+  PG   AKY+
Sbjct: 349  ARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPG---AKYV 405

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IRD G R+DLRY K++ D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+++MPY
Sbjct: 406  IRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVMPY 465

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ ++  VP  IVSPQSN+PVMGIVQ
Sbjct: 466  STFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSQICAVPLQIVSPQSNKPVMGIVQ 525

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL G RK+T RD FIE D  MN+  W  ++DG +P P ++KP+PLWTGKQ+ +L IPK 
Sbjct: 526  DTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAVVKPKPLWTGKQLLSLAIPKG 585

Query: 589  INLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
            I+L R      D  + +L+  DT + I  GE++ G + KKT+G + G LIH +  E GP 
Sbjct: 586  IHLQR-----FDGGRDLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPK 640

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
               +     Q +VNYWLL N FSIGIGDTIADA+TM  +  TI +AK  V+ +I  AQ  
Sbjct: 641  VCAELFSSIQKVVNYWLLHNGFSIGIGDTIADAQTMRDVTKTIQEAKQKVQEIIIDAQHN 700

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             LEPEPG T+ ESFE+ V++VLN ARD AG SA+ SL + NN+K MVT+GSKGSFINISQ
Sbjct: 701  KLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQ 760

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            M+ACVGQQ VEGKRIPFGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM G
Sbjct: 761  MSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAG 820

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E 
Sbjct: 821  REGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEK 880

Query: 889  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLE 945
            Q++D++      F++ +R ++ +     N + +  I+  K I+   +L+ + D E  +L 
Sbjct: 881  QSVDTIPGSDESFERRYRIDILD---TKNMISESLIESGKEIRGDVQLQKILDEEYNQLL 937

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L      +GD SWPLPVNL+R+I NAQ+ F     R SD+   E++  V +L ++
Sbjct: 938  KDRKYLREVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYRASDLRLEEIIFGVRELCKK 997

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
            L VV G+ PL  EAQ+NATL F  LLRS  A++RV++E +L R +FEWV+GEIE++F +S
Sbjct: 998  LLVVRGDTPLVKEAQENATLLFQCLLRSRLAARRVIEEFKLNRVSFEWVLGEIETQFQKS 1057

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
            +V PGEM+G VAAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTP++
Sbjct: 1058 IVHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPAM 1117

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +V+L P V S  E+AK VQ A+E+TTL++VT + E++YDPDP  T+IE+D + V++Y+ +
Sbjct: 1118 TVYLDPEVASDIEKAKIVQSAIEHTTLKNVTSSAEIYYDPDPRTTVIEDDYDTVEAYFAI 1177

Query: 1186 PDEDIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
            PD+ +    +K SPWLLR+EL+R  M+DK+L+MA VAEKI+Q F +DL  I++DD ADKL
Sbjct: 1178 PDQKVEETIDKQSPWLLRLELDRAKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKL 1237

Query: 1244 ILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------------- 1284
            I+R R++ D  PK    D  AE+D  LK+IE++ML  ++LR                   
Sbjct: 1238 IIRCRVVRD--PKSLDEDADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVSHPD 1295

Query: 1285 ----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELR 1328
                            GVNL  VM    VD+ RT SN  IE++ VLGIEA R +L  E+ 
Sbjct: 1296 ETGEFKQGKEWVLETDGVNLADVMAVPGVDSARTYSNDFIEVLSVLGIEATRSSLYKEIL 1355

Query: 1329 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1388
             VI+FDGSYVNYRH+A+L D MT RGHLMAITRHGINR+DTG +MRCSFEETV+ILLDAA
Sbjct: 1356 NVIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAA 1415

Query: 1389 VFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPAR 1448
              AE D  +G++EN+MLGQ+AP+GTG   L +++ ML+ A     PS        M    
Sbjct: 1416 AAAELDDCKGISENVMLGQMAPLGTGSFDLMIDERMLQQA-----PS-----SIAMETIA 1465

Query: 1449 SPVSGTPY--HDGMMSPGYLFSPNLRLSPVTDAQFSP-YVGGMAFSPTSSPGYSPSSPGY 1505
                 TPY  ++               SP+  AQ +   VGG+     +S G  P+SP  
Sbjct: 1466 DDGGATPYKEYESARDENIEIDAGAGFSPIHTAQVNEGIVGGL-----TSYGGQPTSPAA 1520

Query: 1506 -SPSSPGY-SPTSPGYSPTSPGY 1526
             SP S GY + TSPGY+  SPGY
Sbjct: 1521 TSPFSFGYNTATSPGYA--SPGY 1541



 Score =  101 bits (252), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 59/85 (69%), Gaps = 12/85 (14%)

Query: 1673 YSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSS 1732
            YSPTSPSYSPTSP YSPTSPSY+P S +YSP+   SPS         YSPTSP YSPTS 
Sbjct: 1662 YSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPT---SPS---------YSPTSPQYSPTSP 1709

Query: 1733 SYSPTSPSYSPSSPTYSPSSPYNAG 1757
             YSPTSP YSP SP Y P SP   G
Sbjct: 1710 QYSPTSPRYSPGSPGYEPKSPKKDG 1734



 Score = 87.4 bits (215), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 57/95 (60%), Gaps = 27/95 (28%)

Query: 1680 YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
            YSPTSP+YSPTSP Y             SP+SP       YSPTSP YSPTS SYSPTSP
Sbjct: 1662 YSPTSPSYSPTSPQY-------------SPTSP------SYSPTSPQYSPTSPSYSPTSP 1702

Query: 1740 SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
             YSP+SP YSP+SP         YSP SP Y P +
Sbjct: 1703 QYSPTSPQYSPTSPR--------YSPGSPGYEPKS 1729



 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/81 (59%), Positives = 59/81 (72%), Gaps = 10/81 (12%)

Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSP 1778
            YSPTSP+YSPTS  YSPTSPSYSP+SP YSP+SP         YSP+SPQYSP++  YSP
Sbjct: 1662 YSPTSPSYSPTSPQYSPTSPSYSPTSPQYSPTSP--------SYSPTSPQYSPTSPQYSP 1713

Query: 1779 SAPGYSPSSTSQYTPQTNRDD 1799
            ++P YSP S   Y P++ + D
Sbjct: 1714 TSPRYSPGSPG-YEPKSPKKD 1733



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 51/69 (73%), Gaps = 10/69 (14%)

Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYS 1784
             YSPTS SYSPTSP YSP+SP+YSP+SP         YSP+SP YSP++  YSP++P YS
Sbjct: 1661 QYSPTSPSYSPTSPQYSPTSPSYSPTSP--------QYSPTSPSYSPTSPQYSPTSPQYS 1712

Query: 1785 PSSTSQYTP 1793
            P+S  +Y+P
Sbjct: 1713 PTS-PRYSP 1720


>gi|354545641|emb|CCE42368.1| hypothetical protein CPAR2_200110 [Candida parapsilosis]
          Length = 1746

 Score = 1625 bits (4208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 858/1585 (54%), Positives = 1104/1585 (69%), Gaps = 92/1585 (5%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLG 58
            M   FP+S A +  V+ VQFG+LSP+E+R +SV +IE+ ET ++   +P+ GGL+DPRLG
Sbjct: 1    MSRTFPFSNAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQATKRPREGGLNDPRLG 60

Query: 59   TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
            +IDR  KC+TC  +MAECPGHFGH+ELAKP+FHIGF+  +  +  S+C +C K+L DE +
Sbjct: 61   SIDRNFKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCESICMHCGKLLLDESN 120

Query: 119  HKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKN--KGGCGAQQP 176
                QA+KIR+PK R   +   CK+K  CE            EE +  +  +GGCG  QP
Sbjct: 121  PLMAQAIKIRDPKKRFNAVWSICKSKMVCETAT--------SEEEMNDHNVRGGCGHTQP 172

Query: 177  KLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
             +  +G+K+   +K    KN ++   PE    ++ LT   +L V K IS EDC  LG N 
Sbjct: 173  TIRRDGLKLWGTWK--HNKNFEENDQPE----RRLLTPSEILNVFKHISPEDCYRLGFNE 226

Query: 237  KYARPDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
             YARP+WM++ VLP+PPP            R  DDLT +LA II+ N N++R E +G+P 
Sbjct: 227  DYARPEWMLITVLPVPPPPVRPSIAFNDTARGEDDLTFKLADIIKANINVQRLEIDGSPQ 286

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            H+ISEF  LLQFH+ATY DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVD
Sbjct: 287  HVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVD 346

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVI+ DP +++DQ+GVP SIA  LTYPE VTPYNI +L ELV  GP+  PG   AK
Sbjct: 347  FSARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPG---AK 403

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            Y+IRD G R+DLRY K++ D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+M
Sbjct: 404  YVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVM 463

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            PYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETR+E+ ++  VP  IVSPQSN+PVMGI
Sbjct: 464  PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNKPVMGI 523

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDTL G RK+T RD FIE D  MN+  W  ++DG +P P I+KP+PLW+GKQ+ ++ IP
Sbjct: 524  VQDTLCGIRKMTLRDIFIEYDQVMNMCYWIPNWDGVIPPPAIIKPKPLWSGKQMLSMAIP 583

Query: 587  KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            K I++ R      D  + +L+  DT + I  GE++ G + KKT+G + G LIH +  E G
Sbjct: 584  KGIHIQRF-----DGGRDLLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKG 638

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
            P    +     Q +VN+WLL N FSIGIGDTIADA TM+ I  TI +AK  V+ +I  AQ
Sbjct: 639  PQVCAQLFSSIQKVVNFWLLHNGFSIGIGDTIADASTMKDITKTIQEAKQKVQEIILDAQ 698

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
               L+PEPG T+ ESFE+ V++VLN ARD AG SA+ SL + NN+K MVT+GSKGSFINI
Sbjct: 699  HNKLDPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINI 758

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQM+ACVGQQ VEGKRIPFGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM
Sbjct: 759  SQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAM 818

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
             GREGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D+  +
Sbjct: 819  AGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDATQV 878

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E Q++D++    + F++ +R ++ E+N + +  L E   +++   +L+ + D E  +L  
Sbjct: 879  EKQSVDTIPGSDASFERRYRIDLLEKNGSISESLLESGKEIQGDVKLQKLLDEEYNQLLK 938

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L      +GD SWPLPVNL+R+I NAQ+ F     + SD+   E+V  V  L  +L
Sbjct: 939  DRRYLRDVCFPNGDFSWPLPVNLRRIIQNAQQIFHNGRYKASDLRLDEIVNGVRDLCTKL 998

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             VV G+  L+ EAQ+NATL F  L+RS  A++RV++E +L R +F+WV+GEIE++F +S+
Sbjct: 999  LVVRGKTKLAKEAQENATLLFQCLVRSRLAARRVIEEFKLNRSSFDWVLGEIETQFQKSI 1058

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
            V PGEM+G VAAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTP+L+
Sbjct: 1059 VHPGEMVGVVAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPALT 1118

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            V+L P V S  E AK VQ ++E+TTL++VT +TE++YDPDP  T+IEED + V++Y+ +P
Sbjct: 1119 VYLDPEVASDIELAKIVQSSIEHTTLKNVTSSTEIYYDPDPRTTVIEEDYDTVEAYFAIP 1178

Query: 1187 DEDI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            D+ +  + EK SPWLLR+EL+R  M+DK+L+MA VAEKI+Q F +DL  I++DD ADKLI
Sbjct: 1179 DQKVEESIEKQSPWLLRLELDRAKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLI 1238

Query: 1245 LRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------------- 1284
            +R R++ D  PK    D  AE+D  LK+IE++ML  ++LR                    
Sbjct: 1239 IRCRVVRD--PKTLDEDADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKVSKPDE 1296

Query: 1285 ---------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
                           GVNL  VM    VD+ R  SN  IEI+ VLGIEA R AL  E+  
Sbjct: 1297 TGEFKQGKEWVLETDGVNLADVMAVPGVDSARIYSNDFIEILSVLGIEATRSALYKEILN 1356

Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
            VI+FDGSYVNYRH+A+L D MT RGHLMAITRHGINR+DTG +MRCSFEETV+ILLDAA 
Sbjct: 1357 VIAFDGSYVNYRHMALLVDVMTSRGHLMAITRHGINRSDTGALMRCSFEETVEILLDAAA 1416

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARS 1449
             AE D  +G++EN+MLGQ+AP+GTG   + ++D+ML++A     P+        M     
Sbjct: 1417 AAELDDCKGISENVMLGQMAPLGTGAFDVMVDDKMLQSA-----PT-----NVAMEVIAD 1466

Query: 1450 PVSGTPYHDGMMSPGYL-FSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPS 1508
                TPY +  M    +    +   SPV  A   P   GM    TS  G  P+SP  S +
Sbjct: 1467 DGGATPYREAEMQDDRIQVDESAGFSPVHQA---PTAEGMNGGLTSYGG-QPTSP--SAT 1520

Query: 1509 SPGYSPTSPGYSPTSPGYSPTSPGY 1533
            SP    TSP Y  TSPGY  TSPGY
Sbjct: 1521 SPFSYSTSPSYGGTSPGYGGTSPGY 1545



 Score = 46.6 bits (109), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 21/28 (75%), Positives = 22/28 (78%)

Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
             YSPTS  YSPTSPSYSP SP Y+P SP
Sbjct: 1714 QYSPTSPQYSPTSPSYSPGSPGYNPESP 1741



 Score = 42.4 bits (98), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 1530 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1589
            S G+SP     +        TS    PTSP  S TSP    TSPSY  TSP Y  TSP Y
Sbjct: 1488 SAGFSPVHQAPTAEGMNGGLTSYGGQPTSP--SATSPFSYSTSPSYGGTSPGYGGTSPGY 1545


>gi|212533501|ref|XP_002146907.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Talaromyces marneffei ATCC 18224]
 gi|210072271|gb|EEA26360.1| DNA-dependent RNA polymerase II largest subunit, putative
            [Talaromyces marneffei ATCC 18224]
          Length = 1744

 Score = 1624 bits (4206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 878/1767 (49%), Positives = 1162/1767 (65%), Gaps = 152/1767 (8%)

Query: 2    DTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGT 59
            +  FPYS A +  ++ +QFG+LSP+EI+++SVV +E+ ET   +R +P+  G +DPRLGT
Sbjct: 3    NVHFPYSKAPLRTIKEIQFGLLSPEEIKRLSVVHVEYPETMDEQRMRPRTKGPNDPRLGT 62

Query: 60   IDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH 119
            +DR+  CETC     ECPGH+GH+ELA P++HIGF+     ++ +VC NC KI AD  D 
Sbjct: 63   LDRQYYCETCEEGQKECPGHYGHIELATPVYHIGFLTKTKKLLETVCHNCGKIKADMSDP 122

Query: 120  KFKQALKIRNPKNRLKKILDACKNKTKCEGG---DEIDVPGQDGEEPLKKNKGGCGAQQP 176
            KF+ AL+IR+PK R   I    K+   CE     ++ D   ++  +P  K  GGCG  QP
Sbjct: 123  KFQDALRIRDPKRRFDIIWRLSKDVNICEADPIPEDEDPFSKEASKP-HKGHGGCGNAQP 181

Query: 177  KLTIEGMKMIAEYKAQRKKN-DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
             +  EG+ ++  +K  +    DD   +P+P   K+T+T      + + IS ED +++GL+
Sbjct: 182  TIRKEGLSLVGTWKPNKANMMDDDVDMPQP--EKRTITPSMAYNIFRSISHEDVRIMGLS 239

Query: 236  PKYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WMIL VL +PPP V             R  DDLT +LA IIR N+NL+R E+ 
Sbjct: 240  NDYARPEWMILTVLIVPPPVVRPSVVSGKSSSGQRAEDDLTFKLAEIIRANQNLQRCEQE 299

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            GAP H++ EF  LLQ+H+ATY DN++ GQP+A  +S RP+K+I  RLK KEGR+R NLMG
Sbjct: 300  GAPEHVVREFEALLQYHVATYMDNDIAGQPKAMTKSNRPVKAIRGRLKGKEGRLRQNLMG 359

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVI  DP ++++++G P S A+ LTYPE VTPYNIE L++LV  GP   PG 
Sbjct: 360  KRVDFSARTVICGDPNLSLEEVGTPRSTAMILTYPEVVTPYNIEFLQKLVNNGPTIYPG- 418

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              A+YI+RD+G+R+DLR  +K+ + +L  G+KVERHL DGD +LFNRQPSLHK S+MGHR
Sbjct: 419  --ARYIVRDNGERIDLRMARKT-NANLLYGWKVERHLLDGDVILFNRQPSLHKESMMGHR 475

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +++MPYSTFRLNLSVT+PYNADFDGDEMNMHVPQS E RAE+L+L +VP  IVSPQ N P
Sbjct: 476  VRVMPYSTFRLNLSVTTPYNADFDGDEMNMHVPQSEEARAELLQLALVPNNIVSPQRNGP 535

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            +MGIVQD+L G  KI +RD F+ KD  MN+++W  D+DG +PQP I+KPRP WTGKQ+ +
Sbjct: 536  LMGIVQDSLCGIYKICRRDVFLTKDQVMNLMLWVPDWDGVIPQPAIIKPRPRWTGKQIIS 595

Query: 583  LIIPKQINLFRTAAWHADNDKGILTAG-----DTLVRIEKGELLSGTLCKKTLGTSTGSL 637
            +++P  +NL R      D DK  L+       D  + +  G+L+ G   KKT+G S G +
Sbjct: 596  MVLPSGLNLLRV-----DKDKAPLSEKFSPLTDGGILVHGGQLMYGMFSKKTVGASGGGV 650

Query: 638  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNN 697
            +H I+ E GP+AA  F    Q +VNYWLL N FSIGIGDTI D KT+E I D +   K  
Sbjct: 651  VHTIFNEYGPEAAVSFFNGAQRVVNYWLLHNGFSIGIGDTIPDKKTIERIEDAVRAGKAE 710

Query: 698  VKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTA 757
            V+ +++ A + +LE  PG  + E+FE+KV++ LN AR+ AGS  +KSL + NN   M  +
Sbjct: 711  VEEIVQSATENTLEALPGMNIRETFESKVSRALNNAREAAGSETEKSLKDLNNAIQMARS 770

Query: 758  GSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLT 817
            GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLT
Sbjct: 771  GSKGSAINISQMTAIVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLT 830

Query: 818  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 877
            P EFFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD+IQFLYG
Sbjct: 831  PTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEELMVKYDGTVRNSLGDIIQFLYG 890

Query: 878  EDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRD 935
            EDG+D   IE+Q +D +K    +F   FR + MD E    P  +  E   ++    E++ 
Sbjct: 891  EDGLDGAHIENQRVDIIKCSDEQFRDRFRVDLMDPERTLGPEVL--EQAAEISGDVEVQR 948

Query: 936  VFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEV 995
             FD E   L  DR +    IA   +    LP+N++R++ +A+ TF +     SD+HP EV
Sbjct: 949  YFDEEWDALVKDR-EFLRSIAKGDEEMMQLPLNVQRILESAKTTFHIKEGTISDLHPAEV 1007

Query: 996  VEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVI 1055
            +  V  L +RL VV G+D +S EAQ +ATL F   LRS  A KR++ ++ + + AF+ V+
Sbjct: 1008 IPQVQALLDRLVVVRGDDVISKEAQTSATLLFKAQLRSRLAFKRLVTQYSMNKLAFKHVL 1067

Query: 1056 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1115
            G IE RF Q+   PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+E++N
Sbjct: 1068 GAIEMRFAQAQANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKELLN 1127

Query: 1116 VAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEED 1175
            VA  IKTPS++V+ +      KE AK ++  +E+T+LRSVTEATE++YDPD   T+I+ D
Sbjct: 1128 VATNIKTPSMTVYQESHRKHDKEAAKQLRSVVEHTSLRSVTEATEIYYDPDIQSTVIDND 1187

Query: 1176 VEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTC 1233
             + V+SY+ +P ED+  +  + S WLLRI LNR  ++DK L++  VA +I Q++  D+  
Sbjct: 1188 RDMVESYFIIP-EDVTDDSSRQSKWLLRIVLNRAKLLDKGLTVQDVATRIKQQYPRDIAV 1246

Query: 1234 IFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVN------ 1287
            IF+D+NAD+ ++RIR ++D     +  D   +  V LKK+E ++L  + LRGV+      
Sbjct: 1247 IFSDNNADEQVIRIRQLHDAKEDEDEEDMEYD--VTLKKLEQHLLDTLTLRGVSGVERAF 1304

Query: 1288 -----------------------------------LLAVMCHEDVDARRTTSNHLIEIIE 1312
                                               L  V+    VD  RT SN  IE+ E
Sbjct: 1305 INEKDNARLMDDGSLFLSKADPLCKEWVLETSGTALADVLTIPGVDTTRTYSNQFIEVFE 1364

Query: 1313 VLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPM 1372
            V GIEA R ALL EL  V++FDGSYVN+RHLA+L D MT RG+L  +TRHGINR D G +
Sbjct: 1365 VFGIEAARSALLRELTQVLAFDGSYVNHRHLALLVDIMTVRGYLTPVTRHGINRADNGAL 1424

Query: 1373 MRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQ 1432
            MRCSFEETV+ILL+AA F E D  RGV+EN++LGQLAP GTG+  +YL+  +L   +   
Sbjct: 1425 MRCSFEETVEILLEAAAFGELDDCRGVSENLILGQLAPAGTGEFDVYLDQSLLNTVVS-- 1482

Query: 1433 LPSYMEGLEFGMTPARSPV---SGTPYHDG--MMSPGYLFSPNLRLSPVTDAQFSPYVGG 1487
              +   GL  G+    + +   + T Y +   MM  GY+ +P+       DA+FSP    
Sbjct: 1483 -SNTGIGLMGGLGAKDAMINDGAATQYDNNSPMMENGYIGTPD------PDAKFSPIRQA 1535

Query: 1488 MAFSPTSSPGYSPSS--PGYSPS--SP-GYSPTSP---------------------GYSP 1521
             A +P     Y PS    G+SP+  SP GYSPTSP                       S 
Sbjct: 1536 GAETPGGFTAYQPSGGLGGFSPAPQSPGGYSPTSPFNTSPVSPGYSPSSSYSPSSPNMSV 1595

Query: 1522 TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1581
            TSP +  TSPG+SP SP ++ +SP YSPTSP++  TSPSYSPTSP +SP+SP+YSP+SP+
Sbjct: 1596 TSPRFMSTSPGFSPQSPAFAITSPAYSPTSPSFQATSPSYSPTSPRFSPSSPNYSPSSPN 1655

Query: 1582 YSPTSPSYSPTSPSYSPTSPS----------------------YSPTSP-AYSPTSPAY- 1617
            +SP SP++SP+SP+YSPTSP+                      +SPTSP  YSPTSP   
Sbjct: 1656 FSPASPAFSPSSPTYSPTSPAIGGRQFSPSSPSSPKYSPASPGWSPTSPEIYSPTSPNIH 1715

Query: 1618 -SPTSPAYSPTSPSYSPTSPSYSPTSP 1643
             SPTSPA   TSPSYSPTSP Y+PTSP
Sbjct: 1716 GSPTSPARGATSPSYSPTSPQYNPTSP 1742



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/219 (48%), Positives = 137/219 (62%), Gaps = 17/219 (7%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSP 1605
            +SP   A + T   ++   PS      S +P SP  YSPTSP  +         S SYSP
Sbjct: 1529 FSPIRQAGAETPGGFTAYQPSGGLGGFSPAPQSPGGYSPTSPFNTSPVSPGYSPSSSYSP 1588

Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1665
            +SP  S TSP +  TSP +SP SP+++ TSP+YSPTSPS+  TSPSYSPTSP +SP+SP 
Sbjct: 1589 SSPNMSVTSPRFMSTSPGFSPQSPAFAITSPAYSPTSPSFQATSPSYSPTSPRFSPSSPN 1648

Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS---------AKYSPSLAYSPSSPRLSP 1716
            YSP+SP +SP SP++SP+SPTYSPTSP+   +               S  +SP+SP +  
Sbjct: 1649 YSPSSPNFSPASPAFSPSSPTYSPTSPAIGGRQFSPSSPSSPKYSPASPGWSPTSPEI-- 1706

Query: 1717 ASPYSPTSPNY--SPTSSSYSPTSPSYSPSSPTYSPSSP 1753
               YSPTSPN   SPTS +   TSPSYSP+SP Y+P+SP
Sbjct: 1707 ---YSPTSPNIHGSPTSPARGATSPSYSPTSPQYNPTSP 1742



 Score =  114 bits (285), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 96/219 (43%), Positives = 125/219 (57%), Gaps = 32/219 (14%)

Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA-YSPTSPAYSPTSPSYSPTSPSYSP 1640
            +SP   + + T   ++   PS      + +P SP  YSPTSP  +         S SYSP
Sbjct: 1529 FSPIRQAGAETPGGFTAYQPSGGLGGFSPAPQSPGGYSPTSPFNTSPVSPGYSPSSSYSP 1588

Query: 1641 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAK 1700
            +SP+ S TSP +  TSP +SP SPA++ TSP YSPTSPS+  TSP+YSPTSP ++P S  
Sbjct: 1589 SSPNMSVTSPRFMSTSPGFSPQSPAFAITSPAYSPTSPSFQATSPSYSPTSPRFSPSSPN 1648

Query: 1701 YSPSLA-YSPSSPRLSPASP-YSPTSP----------------------NYSPTS-SSYS 1735
            YSPS   +SP+SP  SP+SP YSPTSP                       +SPTS   YS
Sbjct: 1649 YSPSSPNFSPASPAFSPSSPTYSPTSPAIGGRQFSPSSPSSPKYSPASPGWSPTSPEIYS 1708

Query: 1736 PTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
            PTSP+        SP+SP   G  +P YSP+SPQY+P++
Sbjct: 1709 PTSPNIHG-----SPTSPAR-GATSPSYSPTSPQYNPTS 1741



 Score =  103 bits (256), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 124/227 (54%), Gaps = 36/227 (15%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA-YSPTSPSYSPTSPSYSPTSPSYSP 1647
            +SP   + + T   ++   P+      + +P SP  YSPTSP  +         S SYSP
Sbjct: 1529 FSPIRQAGAETPGGFTAYQPSGGLGGFSPAPQSPGGYSPTSPFNTSPVSPGYSPSSSYSP 1588

Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY 1707
            +SP+ S TSP +  TSP +SP SP ++ TSP+YSPTSP++  TSPSY+P S ++SPS   
Sbjct: 1589 SSPNMSVTSPRFMSTSPGFSPQSPAFAITSPAYSPTSPSFQATSPSYSPTSPRFSPSSPN 1648

Query: 1708 SPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPS----------------------YSPSS 1745
               S     +  +SP SP +SP+S +YSPTSP+                      +SP+S
Sbjct: 1649 YSPS-----SPNFSPASPAFSPSSPTYSPTSPAIGGRQFSPSSPSSPKYSPASPGWSPTS 1703

Query: 1746 P-TYSPSSPYNAGGGNPDYSPSSP-QYSPSAGYSPSAPGYSPSSTSQ 1790
            P  YSP+SP      N   SP+SP + + S  YSP++P Y+P+S  Q
Sbjct: 1704 PEIYSPTSP------NIHGSPTSPARGATSPSYSPTSPQYNPTSPRQ 1744


>gi|346321728|gb|EGX91327.1| DNA-directed RNA polymerase II largest subunit [Cordyceps militaris
            CM01]
          Length = 1757

 Score = 1623 bits (4203), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 881/1780 (49%), Positives = 1149/1780 (64%), Gaps = 177/1780 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGK--PKPGGLSDPRLGTIDR 62
            FP+S A +  V  +QFG+LSP+EI+ MSV  I + ET E  K  P+ GGL+DP LG+IDR
Sbjct: 6    FPHSSAPLKTVEEIQFGMLSPEEIKNMSVAHILYPETMEENKTTPRDGGLNDPLLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TC   M+ECPGHFGH+ELAKP++H GF+K V  ++  VC NCSK+LADE D +F 
Sbjct: 66   QFKCKTCAQPMSECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADESDPEFV 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKN-----KGGCGAQQPK 177
             A++ R+ K R K+I   CK K KCE  +  D    +   P  KN      GGCG  QP+
Sbjct: 126  AAVRTRDSKVRFKRIWAVCKKKRKCENEERQDKNKDEEFAPGVKNTVLEGHGGCGNMQPQ 185

Query: 178  LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLN 235
            +    +++ A ++       + E+ P+   RK+T  ++AE   G+L+RIS+ D   +GLN
Sbjct: 186  VRQAALQLKAAFEV------NSEEGPK---RKETVNISAEMAHGILRRISERDLHNMGLN 236

Query: 236  PKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WMI+ V             +       R  DDLT++L  IIR N N+++  R 
Sbjct: 237  SDYARPEWMIITVLPVPPPPVRPSISMDGTGTGTRNEDDLTYKLGDIIRANGNVKQAIRE 296

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMG
Sbjct: 297  GSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMG 356

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG 
Sbjct: 357  KRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPG- 415

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              AKY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR
Sbjct: 416  --AKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHR 473

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAE+ EL +VP  IVSPQ N P
Sbjct: 474  VKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGP 533

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            +MGIVQD+L GC K+ +RDTFI+K++  NI++W  ++DG +PQP ILKPRP WTGKQ+ +
Sbjct: 534  LMGIVQDSLAGCYKLCRRDTFIDKELVQNIMLWVPNWDGVIPQPAILKPRPRWTGKQIIS 593

Query: 583  LIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            ++IP +I+L+      +  DK      D  + I+ G+L+ G L KK +G + G +IH+ +
Sbjct: 594  MVIPAEISLY------SKEDKLDNPKHDAGMLIQSGQLIYGLLKKKYVGAAAGGIIHLCY 647

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E+GPD A  FL   Q +V YWLL    SIGIGDTI D +T++ I   I + K  V  L 
Sbjct: 648  NELGPDGAMAFLNGVQQVVTYWLLNTGHSIGIGDTIPDKETIDKIQAHIDEHKAEVARLT 707

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
             QA    LE  PG  +  +FE+KV+  LN ARD+AG+S QKSL +SNN   M  +GSKGS
Sbjct: 708  AQATANELEALPGMNVRATFESKVSLALNMARDQAGTSTQKSLKDSNNAVTMSESGSKGS 767

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
             INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFF
Sbjct: 768  SINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFF 827

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D
Sbjct: 828  FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGEDGLD 887

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAE 940
            ++ IE Q L ++KM  + F++ +R ++    E +  +Y   EY ++L   K   ++ D E
Sbjct: 888  AMCIERQRLGTIKMSDAAFERQYRLDLANPPEWFRKDY---EYGNELAGDKASMELLDME 944

Query: 941  VQKLEADRYQLA-TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
               L ADR  +        G+    LP+N+ R+I +A++ F +     S++ P +V+  V
Sbjct: 945  WDTLLADRRAVRDINKHKMGEEMMQLPLNIGRIIESAKRVFNIRETDRSNLRPSDVITTV 1004

Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
              L   +K+V G DP+S+EA  NAT+ F  LLRS  A K ++  HRL + AF+ V+GE++
Sbjct: 1005 QTLLSGMKIVRGSDPISLEADFNATILFKALLRSRLAFKEIVYVHRLNKLAFDHVLGELQ 1064

Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
            +R+ ++ V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK 
Sbjct: 1065 NRWDRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKN 1124

Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
            IKTPS++V+L   +  T+E+AK ++  +EYT LRSVT  TE++YDPD   T I EDV+ V
Sbjct: 1125 IKTPSMAVYLDTKL-GTQEQAKKLRSLVEYTNLRSVTSVTEIYYDPDVQATNITEDVDMV 1183

Query: 1180 KSYYEMPDE-DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDD 1238
            +SY+ +PD+      + S WLLRI L+R+ ++DK++++  VA  I +E+  DL  IF+D+
Sbjct: 1184 ESYFMIPDDGQDTIHRQSRWLLRITLDRQKLLDKEITIDDVAACIKEEYATDLAIIFSDN 1243

Query: 1239 NADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------------ 1286
            NAD+ ++RIR +  +  K E  D   EDDV LK++E+++L  M LRGV            
Sbjct: 1244 NADEQVIRIRTIRRDDGKDEDPDTKIEDDVMLKRLEAHLLDTMTLRGVPGVERAFLSKGT 1303

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                          L  V+    VD RRT SN L +I EV G+E
Sbjct: 1304 RLIEDEDGSELALIDNPKCTQWFLDTSGSALREVLAVPGVDPRRTYSNDLYQITEVFGVE 1363

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            AVR AL+ EL  V+SFDGSYVN+RH+A+LCD MTYRG + A+TRHGINR DTG +MRCSF
Sbjct: 1364 AVRSALIKELSNVLSFDGSYVNHRHIALLCDIMTYRGVISAVTRHGINRADTGALMRCSF 1423

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM 1437
            EETV+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  +YL+ +ML+  I     +  
Sbjct: 1424 EETVEILLEAAASGELDDCRGISENVMLGQLAPMGTGNFDVYLDPKMLETVIS---DNSR 1480

Query: 1438 EGLEFGMTPARSPVSG--TPYHDG--MMSPGYL---------FSPNLRLSPVTDAQF-SP 1483
             GL  GM        G  TPY  G  M   GYL         FSP       T   F + 
Sbjct: 1481 MGLMPGMPAKEGEGEGAATPYDSGSPMGESGYLSMASPAAGNFSPIQGAGSETPTGFNTE 1540

Query: 1484 YVGGMAFSPTSSPGYSPSSP----------------GYSPSSP--GYSPTSPGY------ 1519
            Y GG   +   SP YS  +                 GYSPSSP  GYSPTSP        
Sbjct: 1541 YGGGFGTNGAMSP-YSRGASSPFSTSPTSPFSAGMGGYSPSSPNTGYSPTSPMLDGGARY 1599

Query: 1520 -----------------------SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY-- 1554
                                   SP SP YSPTSP YSPTSPT SP    YSPTSPA   
Sbjct: 1600 ATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPT-SPRH--YSPTSPAQFN 1656

Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSP----------------SYSPTSPSYSPT-SPSYS 1597
            SPTSPSYSP SP+YSP SP+    +                 +YSPTSPS+  +     S
Sbjct: 1657 SPTSPSYSPASPNYSPASPNLHGATSPSYSPASPSWSPTSPDAYSPTSPSFGRSPGQQQS 1716

Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
            PTSP YSPTSP +SP +P   P S   + T   YSP+SP+
Sbjct: 1717 PTSPGYSPTSPQFSPRTPG-PPGSGGDAGTGNQYSPSSPN 1755



 Score = 86.3 bits (212), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/242 (41%), Positives = 131/242 (54%), Gaps = 47/242 (19%)

Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP------------A 1623
            SP + ++SP   + S T   ++        T+ A SP S   S                 
Sbjct: 1517 SPAAGNFSPIQGAGSETPTGFNTEYGGGFGTNGAMSPYSRGASSPFSTSPTSPFSAGMGG 1576

Query: 1624 YSPTSPS--YSPTSP-----SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
            YSP+SP+  YSPTSP     +   TSPS+SP+SPS+SPTSP   PTSPA    SP YSPT
Sbjct: 1577 YSPSSPNTGYSPTSPMLDGGARYATSPSFSPSSPSFSPTSPMLRPTSPA----SPNYSPT 1632

Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSP 1736
            SPSYSPTS    PTSP +            YSP+SP    A   SPTSP+YSP S +YSP
Sbjct: 1633 SPSYSPTS----PTSPRH------------YSPTSP----AQFNSPTSPSYSPASPNYSP 1672

Query: 1737 TSPSYSPSSPTYSPSSPYNAGGGNPD-YSPSSPQY--SPSAGYSPSAPGYSPSSTSQYTP 1793
             SP+   ++      +  +    +PD YSP+SP +  SP    SP++PGYSP+S  Q++P
Sbjct: 1673 ASPNLHGATSPSYSPASPSWSPTSPDAYSPTSPSFGRSPGQQQSPTSPGYSPTS-PQFSP 1731

Query: 1794 QT 1795
            +T
Sbjct: 1732 RT 1733


>gi|403417006|emb|CCM03706.1| predicted protein [Fibroporia radiculosa]
          Length = 1621

 Score = 1622 bits (4201), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 870/1644 (52%), Positives = 1105/1644 (67%), Gaps = 150/1644 (9%)

Query: 147  CEGGD-EIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEP 205
            CE  + + D  G D EE  KK  GGCGA QP +  EG+K+  +YK   +  D+ E++   
Sbjct: 3    CESDEPKDDADGMDNEE-TKKGHGGCGASQPLIRKEGLKLFVQYK---RSKDEDEEVKSL 58

Query: 206  VERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-----------LPIPPP 254
               K+      V   LK+ISD D  +LGL+ +YARP+WMIL V           + +   
Sbjct: 59   QPDKRLFPPHEVYTALKKISDADLDMLGLSNEYARPEWMILTVMPVPPPPVRPSIAVDGG 118

Query: 255  PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRA 314
             +R  DDLT++L  II+ + N+RR E+ GAPAH+I+EF QLLQFH+ATY DN++ G P+A
Sbjct: 119  TMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQLLQFHVATYMDNDIAGIPQA 178

Query: 315  TQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNL 374
             Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA+NL
Sbjct: 179  LQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDEVGVPKSIAMNL 238

Query: 375  TYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK 434
            T+PE VTPYNI  L+ELV  GP   PG   A+Y++RD G+R+DLRY  K +D  L+ G+ 
Sbjct: 239  TFPERVTPYNIAYLQELVRNGPTTYPG---ARYVVRDTGERIDLRY-NKRADAFLQYGWI 294

Query: 435  VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHV 494
            VERHL DGDFVLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVT PYNADFDGDEMNMHV
Sbjct: 295  VERHLRDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHV 354

Query: 495  PQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM 554
            PQS ETRAE+ ++  VP+ I+SPQ+N+PVM IVQDTL G RK T RDTF++ +   NIL+
Sbjct: 355  PQSEETRAELSQIAWVPRQIISPQANKPVMAIVQDTLCGIRKFTLRDTFLDWNQVQNILL 414

Query: 555  WWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVR 614
            W  D+DG VP PT++KP+PLWTGKQ+ ++ IP+ IN++R+      + K      D  + 
Sbjct: 415  WVPDWDGSVPLPTVIKPKPLWTGKQILSMCIPRGINIYRSP-----DPKSFNPVFDDGMN 469

Query: 615  IEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGI 674
            IE GE+L G + KKT+G S G LIH+ + E GP+  R      Q +VNYWL  N FSIGI
Sbjct: 470  IENGEILFGVVEKKTVGASQGGLIHITFREKGPEVTRALFSGLQQVVNYWLFHNGFSIGI 529

Query: 675  GDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR 734
            GDTIAD  TM  I + I+  K NV   I  A    L+  PG T+ ESFE++V + LN AR
Sbjct: 530  GDTIADRGTMAHIQEQIAIRKQNVTQAIDDATHDRLKAAPGMTIRESFESRVERELNLAR 589

Query: 735  DEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPH 794
            D+ G  AQK+L E NN+K MV AGSKGSFINISQM+ CVGQQ VEG+RIP+GF  RTLPH
Sbjct: 590  DQNGQYAQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQIVEGRRIPYGFRHRTLPH 649

Query: 795  FTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAME 854
            FTKDD+GPE+RGFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E
Sbjct: 650  FTKDDFGPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALE 709

Query: 855  DIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE--E 912
            D+MV YDGTVRNSLGD+IQF+YGEDGMD  +IE Q +++  M   EF+  +R ++ +   
Sbjct: 710  DVMVCYDGTVRNSLGDLIQFVYGEDGMDGAFIERQNIETFAMNNREFEHNYRVDVTDPSG 769

Query: 913  NWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP--LPVNLK 970
             + P  +LQ  +DD     EL+   D E  +L  DR  L   +    D S P  LPVNL+
Sbjct: 770  GFLPG-VLQAGLDDNSL--ELQAKLDEEFAQLVGDRRLLREFVFRRQDPSVPHHLPVNLQ 826

Query: 971  RLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 1030
            R++ NA + F +D R+PSD+ P  ++++V +L +RL VV G+   + EAQ NA L F + 
Sbjct: 827  RIVQNAVQIFHIDRRKPSDLEPAYIIDSVRELGKRLVVVRGDTLFTREAQDNAALMFRMH 886

Query: 1031 LRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1090
            LR+TFA++RVL+++ L REAFEWV+GEIE++F QSL  PGEM G +AAQSIGEPATQMTL
Sbjct: 887  LRATFAARRVLEKYHLNREAFEWVLGEIEAKFNQSLAHPGEMCGTLAAQSIGEPATQMTL 946

Query: 1091 NTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYT 1150
            NTFHYAGVS+KNVTLGVPRL+EIINVA  IKTPSLS++L P +   +  A +VQ  L YT
Sbjct: 947  NTFHYAGVSSKNVTLGVPRLKEIINVATNIKTPSLSIYLDPEIAKDQISANSVQQELAYT 1006

Query: 1151 TLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAP--EKISPWLLRIELNREM 1208
            +LR+VT A E+WYDPDP  TIIEED  FV+S++ +PD+D+       SPWLLR+EL+R  
Sbjct: 1007 SLRTVTAAVEIWYDPDPSSTIIEEDSMFVESFFAIPDDDVEANLHLQSPWLLRLELDRAK 1066

Query: 1209 MVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDV 1268
            M+D+KL+M+ VA +I   F  DL  I+++DN++KLI+R R++   A K E   ++ E+D+
Sbjct: 1067 MIDRKLTMSYVAGRIADNFKTDLFVIWSEDNSEKLIIRCRVLGG-ADKEEDGMDTVEEDI 1125

Query: 1269 FLKKIESNMLTEMALR-------------------------------------GVNLLAV 1291
            FL+++E+ ML  ++LR                                     GVNL AV
Sbjct: 1126 FLRQLENTMLNSISLRGVTGIQRVFLLEHDRVSITEEGSIKAHSEKEWVLETDGVNLKAV 1185

Query: 1292 MCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMT 1351
            M    VD +RT SN  +E+  VLGIEA R A++ ELR VI FDGSYVNYRHL++LCD MT
Sbjct: 1186 MSIGGVDFKRTYSNSCVEVFNVLGIEAARAAIMKELRGVIEFDGSYVNYRHLSLLCDLMT 1245

Query: 1352 YRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPI 1411
            +RG LMAITRHGINR DTG +MR SFEETV+IL++AA   E D   G+ EN++ GQ+AP+
Sbjct: 1246 HRGILMAITRHGINRADTGALMRSSFEETVEILMEAAAVGERDDCHGIAENVIFGQMAPM 1305

Query: 1412 GTGDCSLYLNDEMLKNAI-------ELQLPSYMEGLEFGMTPARSPVSGTPYHDG----- 1459
            GTG   + L+ +MLK+ I       +  L + ++G   GMTP +  V+ TPY        
Sbjct: 1306 GTGAFDVALDIDMLKDVIVDHRLPVQTMLAAQVDG---GMTPGQ--VAMTPYDSNSPMWS 1360

Query: 1460 ----MMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPG-YSP 1514
                       FSP L ++   D     Y+ G   SP  +   SP++PGYSPSSP  YSP
Sbjct: 1361 QDSSFKGEAAAFSP-LAVNGGEDPASFSYL-GFGQSPMGAGAMSPAAPGYSPSSPNVYSP 1418

Query: 1515 TSPGYSPTSPGYSPTSP-GYSP--TSPTY----SPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
            TSP Y P SP    TSP G SP  TSP Y     P+SP YSPTSPA + TSP YSPTSP 
Sbjct: 1419 TSP-YVPPSPFGGATSPFGTSPYATSPFYDRTRGPTSPTYSPTSPALNLTSPGYSPTSPR 1477

Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS------------- 1614
            YSPTSPS+SPTSP YSP SPS+SPTSP YSPTSPS+SP SP YSP+              
Sbjct: 1478 YSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPRYSPSMYFVFYTVIILMVP 1537

Query: 1615 -------PAYSPTSP--------------------AYSPTSPSYSPTSPSYSPTSPSYSP 1647
                      SP+SP                    AYSP SP+YSP SP+YSPTSP +SP
Sbjct: 1538 YNLYQFLQHMSPSSPKYSPTSPASPSSPKYSPTSPAYSPASPAYSPASPAYSPTSPQWSP 1597

Query: 1648 TSPSY-----SPTSPSYSPTSPAY 1666
            +SP+      S  S SYS TSP++
Sbjct: 1598 SSPAQQQNGGSGRSHSYS-TSPSW 1620



 Score =  174 bits (440), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 125/285 (43%), Positives = 160/285 (56%), Gaps = 51/285 (17%)

Query: 1530 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPS 1588
            +PG    +P Y  +SP +S  S ++   + ++SP + +      S+S      SP  + +
Sbjct: 1343 TPGQVAMTP-YDSNSPMWSQDS-SFKGEAAAFSPLAVNGGEDPASFSYLGFGQSPMGAGA 1400

Query: 1589 YSPTSPSYSPTSPS-YSPTSPAYSPTSPAYSPTSP-AYSP--TSPSY----SPTSPSYSP 1640
             SP +P YSP+SP+ YSPTSP Y P SP    TSP   SP  TSP Y     PTSP+YSP
Sbjct: 1401 MSPAAPGYSPSSPNVYSPTSP-YVPPSPFGGATSPFGTSPYATSPFYDRTRGPTSPTYSP 1459

Query: 1641 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAK 1700
            TSP+ + TSP YSPTSP YSPTSP++SPTSP YSP SPS+SPTSP YSPTSPS++P S +
Sbjct: 1460 TSPALNLTSPGYSPTSPRYSPTSPSFSPTSPRYSPQSPSFSPTSPRYSPTSPSFSPASPR 1519

Query: 1701 YSPSLAY---------------------SPSSPR--------------LSPASPYSPTSP 1725
            YSPS+ +                     SPSSP+                 +  YSP SP
Sbjct: 1520 YSPSMYFVFYTVIILMVPYNLYQFLQHMSPSSPKYSPTSPASPSSPKYSPTSPAYSPASP 1579

Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY 1770
             YSP S +YSPTSP +SPS    SP+   N G G      +SP +
Sbjct: 1580 AYSPASPAYSPTSPQWSPS----SPAQQQNGGSGRSHSYSTSPSW 1620



 Score =  144 bits (363), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 121/288 (42%), Positives = 150/288 (52%), Gaps = 67/288 (23%)

Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
            G +P   A +P    Y   SP +S  S S+   + ++SP + +      S+S      SP
Sbjct: 1341 GMTPGQVAMTP----YDSNSPMWSQDS-SFKGEAAAFSPLAVNGGEDPASFSYLGFGQSP 1395

Query: 1606 T-SPAYSPTSPAYSPTSP-AYSPTSPSYSPTSPSYSPTSP-SYSP--TSPSYSPTSPSYS 1660
              + A SP +P YSP+SP  YSPTSP Y P SP    TSP   SP  TSP Y  T     
Sbjct: 1396 MGAGAMSPAAPGYSPSSPNVYSPTSP-YVPPSPFGGATSPFGTSPYATSPFYDRTR---G 1451

Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPY 1720
            PTSP YSPTSP  + TSP YSPTSP YSPTSPS+             SP+SPR      Y
Sbjct: 1452 PTSPTYSPTSPALNLTSPGYSPTSPRYSPTSPSF-------------SPTSPR------Y 1492

Query: 1721 SPTSPNYSPTSSSYSPTSPSYSPSSPTYSPS------------SPYNAGGGNPDYSPSSP 1768
            SP SP++SPTS  YSPTSPS+SP+SP YSPS             PYN        SPSSP
Sbjct: 1493 SPQSPSFSPTSPRYSPTSPSFSPASPRYSPSMYFVFYTVIILMVPYNLYQFLQHMSPSSP 1552

Query: 1769 Q--------------------YSPSA-GYSPSAPGYSPSSTSQYTPQT 1795
            +                    YSP++  YSP++P YSP+S  Q++P +
Sbjct: 1553 KYSPTSPASPSSPKYSPTSPAYSPASPAYSPASPAYSPTS-PQWSPSS 1599


>gi|310789907|gb|EFQ25440.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
          Length = 1753

 Score = 1622 bits (4199), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 876/1749 (50%), Positives = 1166/1749 (66%), Gaps = 142/1749 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            F +S A +  V  +QFG+++P+EI+ MSV    + ET +  R KP+ GGL+DP LG+IDR
Sbjct: 6    FTHSSAPIKTVEEIQFGLMAPEEIKNMSVCHCVYPETMDETRTKPRDGGLNDPLLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TC+  M ECPGHFGH+ELAKP++H GF+K V  ++  VC NCSK+LAD  D +F 
Sbjct: 66   QFKCKTCSQAMGECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADRSDPEFL 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK-----NKGGCGAQQPK 177
            QA+  R+PK R  ++ + CK KT+CE   +   P  DGE  L       N GGCG  QP+
Sbjct: 126  QAVNTRDPKVRFNRVWNICKKKTRCENEVKEQKP-DDGEYGLNMKQAPVNHGGCGNIQPR 184

Query: 178  LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
            +  + +++IA+++AQ +    +++ P        +T E    +L+RISD+D + +GLN +
Sbjct: 185  VRHKALQLIAKFEAQGEDGVKKKEEP-------PITPEMAHNILRRISDDDLRDMGLNLE 237

Query: 238  YARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGA 284
            YARP+WMI+ V             +      +R  DDLT++L  IIR N N+++  R G+
Sbjct: 238  YARPEWMIVTVLPVPPPPVRPSISMDGTGQGLRNEDDLTYKLGDIIRANSNVKQAIREGS 297

Query: 285  PAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKR 344
            PAHI  +F QLLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKR
Sbjct: 298  PAHIAQDFEQLLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKR 357

Query: 345  VDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTG 404
            VDFSARTVIT D  +++D++GVP SIA  LTYPETVTPYNI RL ELV+ GP+  PG   
Sbjct: 358  VDFSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNIGRLHELVQNGPNEHPG--- 414

Query: 405  AKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIK 464
            AKY+IR DG R+DLR+ +++    LE G+KVERHL  GD+++FNRQPSLHK S+MGHR++
Sbjct: 415  AKYVIRTDGTRIDLRHHRRAGQISLEYGWKVERHLITGDYIIFNRQPSLHKESMMGHRVR 474

Query: 465  IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 524
            +MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N P+M
Sbjct: 475  VMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPINIVSPQRNGPLM 534

Query: 525  GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLI 584
            GIVQDTL G  K+ +RD F+ K+  MNI++W  ++DG +P P I++PRP WTGKQ+ +L 
Sbjct: 535  GIVQDTLAGAYKLCRRDVFLSKEQVMNIMLWVPNWDGIIPPPAIVRPRPRWTGKQIMSLA 594

Query: 585  IPKQINLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            +P  ++L        DN   D+G+L        I+ G+++ G L KK +G ++G ++H++
Sbjct: 595  VPNIVSLHSAPDSKEDNPLKDEGLL--------IQSGQIMYGLLSKKNIGAASGGIVHIV 646

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E GP+AA KFL   Q +VNYWLL N FSIGIGDTI D  T+E +   I + K  V+  
Sbjct: 647  YNEHGPEAAMKFLNGVQQVVNYWLLHNGFSIGIGDTIPDKVTIEKVQVHIDEHKAEVEEY 706

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
             +QA    LEP PG  + E+FE+KV++ LNTARD+AG++ QKSL + NN   M ++GSKG
Sbjct: 707  TRQATANELEPLPGMNIRETFESKVSKALNTARDKAGTTTQKSLKDLNNAVTMASSGSKG 766

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EF
Sbjct: 767  SSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEF 826

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  KYDGTVRNSLGD++QFLYGEDG+
Sbjct: 827  FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVSAKYDGTVRNSLGDILQFLYGEDGL 886

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
            D+++IE Q +D L M   +F   FR ++ +EN        EY +++     ++ + D E 
Sbjct: 887  DAIYIEKQRMDHLNMSDKKFIDRFRLDVMDENRPEELEWLEYGNEIAGDPSVQQLLDEEF 946

Query: 942  QKLEADRYQL-ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
              L ADR Q+         D +  LP+N+ RL+  ++K F V+  + SD+ P +V+ AV 
Sbjct: 947  DALLADRKQVRQINFKRKDDETMQLPLNIVRLMETSKKLFAVEDFQRSDLRPQDVIPAVQ 1006

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             + +R+ +V G D +S EA  +AT+ F   +RS  A KR+    RL + AFE V+GE+E+
Sbjct: 1007 AMLKRMTIVRGNDEISKEADYSATILFKAQIRSRLAFKRIACHQRLNKMAFEHVLGELEA 1066

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            R+ ++ V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+A+ I
Sbjct: 1067 RWDRAFVSPGEMVGVIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAQNI 1126

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            KTPS+ V+L    N+++E AK ++  +E+TTLRSVT  TE++YDP+   T I +D++ V+
Sbjct: 1127 KTPSMVVYLSGEDNASQEAAKALRSTVEHTTLRSVTAVTEIYYDPEITSTNIPDDLDMVE 1186

Query: 1181 SYYEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
            SYY +PDE     E  S WLLR+ L+R+ ++DK+L++  VA +I +E+ +DL  IF+D+N
Sbjct: 1187 SYYLIPDESHDKTEDQSRWLLRLTLDRQKLLDKELTVEDVARRIKEEYPNDLAVIFSDNN 1246

Query: 1240 ADKLILRIRIM---NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVN--------- 1287
            A++ I+RIR M   ND   K E  ++  EDDV LK++E+++L  ++LRGV          
Sbjct: 1247 AEEQIIRIRPMHAGNDN--KDEDGEKKIEDDVMLKRLETHLLDTLSLRGVKGIERAFLNK 1304

Query: 1288 -----------LLA---------------------VMCHEDVDARRTTSNHLIEIIEVLG 1315
                       LLA                     V+  + VD+ RT +NHL +++EV G
Sbjct: 1305 ETKLIETEDGALLAAKADERCSEWYLDTSGTALRQVLAVDGVDSNRTYTNHLWQVVEVFG 1364

Query: 1316 IEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRC 1375
            IEA R AL+ EL  V++FDGSYVN+RHLA+LCD MTYRG + A+TRHGINR DTG +MRC
Sbjct: 1365 IEAARAALVRELTQVLAFDGSYVNHRHLALLCDVMTYRGTISAVTRHGINRADTGALMRC 1424

Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS 1435
            SFEETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG   + L+ +ML+  I     +
Sbjct: 1425 SFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFDVLLDPKMLETVIS---DN 1481

Query: 1436 YMEGLEFGMTPARSPVSG---TPYHDG--MMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
               GL  GM P +   +G   TPY  G  M   GY+      LS      FSP VG  + 
Sbjct: 1482 SRMGLMPGM-PVKGGEAGGAATPYDSGSPMADSGYM-----SLSSPAAGNFSPIVGAGSD 1535

Query: 1491 SPTS-SPGYSPSSPGYSPSSPGYSPTSPGYSPTSP-------------GYSPTSP--GYS 1534
            SPT     Y  S  G   S   YS  SPG   +               GYSP+SP  GYS
Sbjct: 1536 SPTGFGTEYGGSGFGGIGSVNPYSSASPGRPTSPFSTSPTSPFSSGYGGYSPSSPNAGYS 1595

Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT---------------S 1579
            PTSP    ++  Y  TSP +SP+SPS+SPTSP   PTSP+ SP                 
Sbjct: 1596 PTSPLMDGAAGRYGATSPQFSPSSPSFSPTSPMLRPTSPA-SPNYSPTSPSYSPASPSSP 1654

Query: 1580 PSYSPTSPSY--SPTSPSYSPTSPSYSPTSP---AYSPTSPAYSPTSPAYSPTSPS-YSP 1633
              YSPTSP+   SPTSPSYSP SP+YSP SP      PTSP+YSP SP +SPTSP+ YSP
Sbjct: 1655 RHYSPTSPAQYASPTSPSYSPASPNYSPASPNLHGAGPTSPSYSPASPTWSPTSPAQYSP 1714

Query: 1634 TSPSYSPTS 1642
            TSPS+  T+
Sbjct: 1715 TSPSFQQTA 1723



 Score = 60.5 bits (145), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 77/144 (53%), Gaps = 35/144 (24%)

Query: 1672 GYSPTSPS--YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSP 1729
            GYSP+SP+  YSPTSP     +  Y   S ++SPS      +  +    P SP SPNYSP
Sbjct: 1584 GYSPSSPNAGYSPTSPLMDGAAGRYGATSPQFSPSSPSFSPTSPM--LRPTSPASPNYSP 1641

Query: 1730 TSSS-----------YSPTSPSY--SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGY 1776
            TS S           YSPTSP+   SP+SP+YSP+SP        +YSP+SP      G 
Sbjct: 1642 TSPSYSPASPSSPRHYSPTSPAQYASPTSPSYSPASP--------NYSPASPNLH---GA 1690

Query: 1777 SPSAPGYSPS-------STSQYTP 1793
             P++P YSP+       S +QY+P
Sbjct: 1691 GPTSPSYSPASPTWSPTSPAQYSP 1714


>gi|116182152|ref|XP_001220925.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
            CBS 148.51]
 gi|88186001|gb|EAQ93469.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
            CBS 148.51]
          Length = 1756

 Score = 1621 bits (4198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 876/1778 (49%), Positives = 1164/1778 (65%), Gaps = 181/1778 (10%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            F +S A +  ++ +QFG+LSP+EI+ MSV  I + ET +  R KP+ GGL+DP LG++DR
Sbjct: 6    FTHSSAPIRTIKEIQFGLLSPEEIKGMSVCHIVYPETMDESRTKPRDGGLNDPLLGSVDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TCT NM ECPGHFGH+EL++P+FH GF++ V  ++  VC NCSK+LAD +D ++ 
Sbjct: 66   QFKCKTCTENMTECPGHFGHIELSRPVFHPGFIRRVKKLLEMVCHNCSKVLADREDEQYA 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKKNK------GGCGAQQ 175
             A++IR+PK R K++ D CK+K +CE  +E+   G+DGE +P  +N+      GGCG  Q
Sbjct: 126  AAMRIRDPKVRFKRVWDICKSKKRCE--NEVR-KGKDGEFKPDSENQAAEGGHGGCGNTQ 182

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P +  + + +   + +   K++D  +  E    K+ +T E  L + +R+SD++   +GLN
Sbjct: 183  PVIRQQALTL---WGSVETKDEDGVKTKE----KKVITPEMALNIFRRMSDDEMIDIGLN 235

Query: 236  PKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERN 282
               ARP+WMI+ V             +      +R  DDLT++L  IIR N N+R+    
Sbjct: 236  ISQARPEWMIITVLPVPPPPVRPSISMDGTGTGLRNEDDLTYKLGDIIRANGNVRQAIAE 295

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P HII++F  LLQ+H+ATY DN++ GQP+A Q+SGRP+K+I +RLK KEGR+RGNLMG
Sbjct: 296  GSPQHIITDFENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMG 355

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT D  I++D++GVP SIA  LTYPETVTPYNI +L + V+ GP   PG 
Sbjct: 356  KRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIAKLTKYVQNGPTEHPG- 414

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              A++++R DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR
Sbjct: 415  --ARFVVRSDGTRIDLRHSRRATGIQLEYGWKVERHLLDGDYIIFNRQPSLHKESMMGHR 472

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL MVP  IVSPQ N P
Sbjct: 473  VRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNGP 532

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            +MGIVQDTL G  K+ +RD F+ K+  MNI++W  D+DG +P P I KPRP WTGKQ+ +
Sbjct: 533  LMGIVQDTLAGVYKLCRRDVFLTKEEVMNIMLWVPDWDGIIPLPAIFKPRPRWTGKQIIS 592

Query: 583  LIIPKQINLFRTAAW----HADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLI 638
            ++IP  IN+   +      H   D G+L        I++GEL+ G L KK++G + G ++
Sbjct: 593  MVIPNIINIHMPSDQPDRDHPFKDDGLL--------IQQGELMFGLLMKKSVGAAGGGIV 644

Query: 639  HVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNV 698
            H+ + E+GP  A  FL   Q +VNYWLL N  SIGIGDTI D  T+E I   I+  K  V
Sbjct: 645  HLCYNELGPYGAMDFLNGCQRVVNYWLLHNGHSIGIGDTIPDTITIELIQKHINDEKEEV 704

Query: 699  KNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAG 758
            + L + A +  LE  PG  + E+FENKV+  LN ARD+AG+S +KSL + NN   M  +G
Sbjct: 705  RRLTQAATNNQLEALPGMNIRETFENKVSTALNKARDKAGTSTEKSLKDLNNAVTMARSG 764

Query: 759  SKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTP 818
            SKGS INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP
Sbjct: 765  SKGSAINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTP 824

Query: 819  QEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGE 878
             EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED   +YDGTVRNSLGD+IQF+YGE
Sbjct: 825  SEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDAEARYDGTVRNSLGDIIQFVYGE 884

Query: 879  DGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVF 937
            DG+D + IE Q +D + M    FDK FR + MDE          EY  ++ +   ++++ 
Sbjct: 885  DGLDGIAIEKQRVDHMNMSNHNFDKRFRLDVMDEATSVAALESLEYGREMISDPAVQELL 944

Query: 938  DAEVQKLEADRYQLATEI--ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEV 995
            D E ++L ADR +L   I      +    LP+N+ R+I  A+K FKVD  + SD+ P +V
Sbjct: 945  DQEYEQLMADR-ELVRSINRRKQAEDQMQLPLNIARIIETAKKLFKVDDSQRSDLTPNDV 1003

Query: 996  VEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVI 1055
            +  V  L ER+ VV G DP+S EA  N+T+ F I LRS  A KR+  E R+ + AFE ++
Sbjct: 1004 IPVVKALLERMIVVRGSDPISKEADYNSTILFKIQLRSRLAYKRLAVEQRINKLAFEHIL 1063

Query: 1056 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1115
            GE+E+R+ +S+VAPGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N
Sbjct: 1064 GELENRWSRSMVAPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILN 1123

Query: 1116 VAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEED 1175
            VAK IKTPS+ V+L    N+T+E AK ++ A+E+T+LRSVT  TE++YDP+   T I ED
Sbjct: 1124 VAKDIKTPSMVVYLD-SENATQEDAKRMRNAVEHTSLRSVTAVTEIYYDPEVTATNIPED 1182

Query: 1176 VEFVKSYYEMPD--EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTC 1233
             + V+SY+ +PD  +  + E  S WLLR+ L+R+ M+DK L +  VA++I +E+  D+  
Sbjct: 1183 FDMVESYFLIPDSSDQDSIENQSRWLLRLTLDRQKMLDKGLRVEDVAQRIKEEYKKDVAV 1242

Query: 1234 IFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------- 1286
            IF+D+NA+++I+RIR++  +  K E  ++  EDDV LK++E ++L    LRGV       
Sbjct: 1243 IFSDNNAEEMIIRIRVIRQDDDKDEDGNKIIEDDVMLKRLEKHLLDNCTLRGVPGIERAF 1302

Query: 1287 ----------------------------------NLLAVMCHEDVDARRTTSNHLIEIIE 1312
                                               L  V+  + VD +RT++N L +I++
Sbjct: 1303 LNKGTRLVVMPDGSQVANKDTPECMEWYLDTQGTTLRDVLTIDGVDTKRTSTNDLYQIVD 1362

Query: 1313 VLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPM 1372
            V GIEA R AL+ EL  V++FDGSYVN+RHLA+L D MTYRG + A+TRHGINR DTG +
Sbjct: 1363 VFGIEAARSALMQELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGAL 1422

Query: 1373 MRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQ 1432
            MRCSFEETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG   + L+ +ML+  I   
Sbjct: 1423 MRCSFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFDVLLDPKMLETVIS-- 1480

Query: 1433 LPSYMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYL--FSPNL-RLSPVTDA------ 1479
              +   GL   MT     + G  TPY  G  M   G+L  +SP +   SP+  A      
Sbjct: 1481 -DNSRMGLMPNMTIKGGQLEGAATPYDTGSPMADNGHLGSYSPTMGNFSPIQGAGSDSPN 1539

Query: 1480 QFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSP-----GYSPTSP-GYSPTSPGY 1533
             F    GG   S T +P Y+ S    SP S   SPTSP     GYSPTSP GYSPTSP  
Sbjct: 1540 GFGTEYGGGFGSSTVNP-YATSPRATSPFST--SPTSPFSYGGGYSPTSPAGYSPTSPLL 1596

Query: 1534 -----------------------------SPTSPTYSPSSPGYSPTSPA----YSPTSP- 1559
                                         SPTSP YSP+SP YSP SPA    YSPTSP 
Sbjct: 1597 DAGGRYASSPQFSPSSPSFSPTSPMLRPGSPTSPNYSPTSPSYSPASPAATRHYSPTSPQ 1656

Query: 1560 ----------------------SYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT-SPS 1595
                                  +   TSPSYSP SP++SPTSP +YSPTSPS+  +    
Sbjct: 1657 QFNSPTSPSYSPTSPSYSPASPNLHATSPSYSPASPTWSPTSPDAYSPTSPSFHRSPGQQ 1716

Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPA---YSPTSPS 1630
             SPTSP YSPTSP++SP +P   P+  +   YSPTSP+
Sbjct: 1717 MSPTSPGYSPTSPSFSPRTPGRGPSGGSGDQYSPTSPT 1754



 Score =  113 bits (282), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 111/250 (44%), Positives = 127/250 (50%), Gaps = 60/250 (24%)

Query: 1553 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSP--- 1608
            +YSPT  ++SP   + S  SP+   T       S + +P + S   TSP S SPTSP   
Sbjct: 1519 SYSPTMGNFSPIQGAGS-DSPNGFGTEYGGGFGSSTVNPYATSPRATSPFSTSPTSPFSY 1577

Query: 1609 --AYSPTSPA-YSPTSP--------AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
               YSPTSPA YSPTSP        A SP     SP+    SP     SPTSP+YSPTSP
Sbjct: 1578 GGGYSPTSPAGYSPTSPLLDAGGRYASSPQFSPSSPSFSPTSPMLRPGSPTSPNYSPTSP 1637

Query: 1658 SYSPTSPA----YSPTSP-----------------------GYSPTSPSYSPTSPTYSPT 1690
            SYSP SPA    YSPTSP                           TSPSYSP SPT+SPT
Sbjct: 1638 SYSPASPAATRHYSPTSPQQFNSPTSPSYSPTSPSYSPASPNLHATSPSYSPASPTWSPT 1697

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRL--SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPT- 1747
            SP             AYSP+SP    SP    SPTSP YSPTS S+SP +P   PS  + 
Sbjct: 1698 SPD------------AYSPTSPSFHRSPGQQMSPTSPGYSPTSPSFSPRTPGRGPSGGSG 1745

Query: 1748 --YSPSSPYN 1755
              YSP+SP N
Sbjct: 1746 DQYSPTSPTN 1755



 Score = 99.8 bits (247), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/236 (40%), Positives = 116/236 (49%), Gaps = 63/236 (26%)

Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP-SYSPTSP--- 1650
            SYSPT  ++SP   A S  SP    T       S + +P + S   TSP S SPTSP   
Sbjct: 1519 SYSPTMGNFSPIQGAGS-DSPNGFGTEYGGGFGSSTVNPYATSPRATSPFSTSPTSPFSY 1577

Query: 1651 --SYSPTSPS-YSPTSPAY-----------------------------SPTSPGYSPTSP 1678
               YSPTSP+ YSPTSP                               SPTSP YSPTSP
Sbjct: 1578 GGGYSPTSPAGYSPTSPLLDAGGRYASSPQFSPSSPSFSPTSPMLRPGSPTSPNYSPTSP 1637

Query: 1679 SYSPTSPT----YSPTSPS-YNPQSAK----------------YSPSLAYSPSSPRLSPA 1717
            SYSP SP     YSPTSP  +N  ++                 ++ S +YSP+SP  SP 
Sbjct: 1638 SYSPASPAATRHYSPTSPQQFNSPTSPSYSPTSPSYSPASPNLHATSPSYSPASPTWSPT 1697

Query: 1718 SP--YSPTSPNYSPT-SSSYSPTSPSYSPSSPTYSPSSPYNAGGGNP--DYSPSSP 1768
            SP  YSPTSP++  +     SPTSP YSP+SP++SP +P     G     YSP+SP
Sbjct: 1698 SPDAYSPTSPSFHRSPGQQMSPTSPGYSPTSPSFSPRTPGRGPSGGSGDQYSPTSP 1753



 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 83/209 (39%), Positives = 106/209 (50%), Gaps = 32/209 (15%)

Query: 1609 AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSP-AY 1666
            +YSPT   +SP   A S  SP+   T       S + +P + S   TSP S SPTSP +Y
Sbjct: 1519 SYSPTMGNFSPIQGAGS-DSPNGFGTEYGGGFGSSTVNPYATSPRATSPFSTSPTSPFSY 1577

Query: 1667 SPTSPGYSPTSPS-YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
                 GYSPTSP+ YSPTSP        Y         S ++SP+SP L P SP   TSP
Sbjct: 1578 GG---GYSPTSPAGYSPTSPLLD-AGGRYASSPQFSPSSPSFSPTSPMLRPGSP---TSP 1630

Query: 1726 NYSPTSSSYSPTSPS----YSPSSP---------------TYSPSSPYNAGGGNPDYSPS 1766
            NYSPTS SYSP SP+    YSP+SP                    +  N    +P YSP+
Sbjct: 1631 NYSPTSPSYSPASPAATRHYSPTSPQQFNSPTSPSYSPTSPSYSPASPNLHATSPSYSPA 1690

Query: 1767 SPQYSPSA--GYSPSAPGYSPSSTSQYTP 1793
            SP +SP++   YSP++P +  S   Q +P
Sbjct: 1691 SPTWSPTSPDAYSPTSPSFHRSPGQQMSP 1719



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/226 (34%), Positives = 99/226 (43%), Gaps = 90/226 (39%)

Query: 1651 SYSPTSPSYSPTSPAYSPTSPGY-------------SPTSPSYSPTSP-TYSPTSP-SYN 1695
            SYSPT  ++SP   A S +  G+             +P + S   TSP + SPTSP SY 
Sbjct: 1519 SYSPTMGNFSPIQGAGSDSPNGFGTEYGGGFGSSTVNPYATSPRATSPFSTSPTSPFSYG 1578

Query: 1696 PQSAKYSPSLAYSPSSPRLSPASPY-----------------------SPTSPNYSPTSS 1732
               +  SP+  YSP+SP L     Y                       SPTSPNYSPTS 
Sbjct: 1579 GGYSPTSPA-GYSPTSPLLDAGGRYASSPQFSPSSPSFSPTSPMLRPGSPTSPNYSPTSP 1637

Query: 1733 SYSP-----------------------------------------TSPSYSPSSPTYSPS 1751
            SYSP                                         TSPSYSP+SPT+SP+
Sbjct: 1638 SYSPASPAATRHYSPTSPQQFNSPTSPSYSPTSPSYSPASPNLHATSPSYSPASPTWSPT 1697

Query: 1752 SPYNAGGGNPDYSPSSPQY--SPSAGYSPSAPGYSPSSTSQYTPQT 1795
            SP         YSP+SP +  SP    SP++PGYSP+S S ++P+T
Sbjct: 1698 SP-------DAYSPTSPSFHRSPGQQMSPTSPGYSPTSPS-FSPRT 1735


>gi|400603032|gb|EJP70630.1| RNA polymerase Rpb1 [Beauveria bassiana ARSEF 2860]
          Length = 1759

 Score = 1619 bits (4193), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 881/1787 (49%), Positives = 1157/1787 (64%), Gaps = 182/1787 (10%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGK--PKPGGLSDPRLGTIDR 62
            FP+S A +  V  +QFG+LSP+EI+ MSV  I + ET E  K  P+ GGL+DP LG+IDR
Sbjct: 6    FPHSSAPLKTVEEIQFGMLSPEEIKNMSVAHILYPETMEENKTTPRDGGLNDPLLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TC+  M+ECPGHFGH+ELAKP++H GF+K V  ++  VC NCSK+LADE D +F 
Sbjct: 66   QFKCKTCSQPMSECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADESDPEFV 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKN-----KGGCGAQQPK 177
             A+  R+PK R K++   CK K KCE  +  D    +   P  KN      GGCG  QP+
Sbjct: 126  TAIHTRDPKLRFKRVWAVCKKKRKCENEERQDKNKDEEFAPGVKNVVLEGHGGCGNMQPQ 185

Query: 178  LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLN 235
            +    +++ A ++   +         E  +RK+T  ++AE   G+L+RIS+ D   +GLN
Sbjct: 186  VRQAALQLKAAFEVTSE---------EGPKRKETVNISAEMAHGILRRISERDLHNIGLN 236

Query: 236  PKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WMI+ V             +       R  DDLT++L  IIR N N+++  R 
Sbjct: 237  SDYARPEWMIITVLPVPPPPVRPSISMDGTGTGTRNEDDLTYKLGDIIRANGNVKQAIRE 296

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMG
Sbjct: 297  GSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMG 356

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG 
Sbjct: 357  KRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIAKLHQLVENGPNEHPG- 415

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              AKY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR
Sbjct: 416  --AKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHR 473

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAE+ EL +VP  IVSPQ N P
Sbjct: 474  VKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEIKELCLVPNNIVSPQKNGP 533

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            +MGIVQD+L G  K+ +RDTFI+K++  N+++W  ++DG +PQP ILKPRP WTGKQ+ +
Sbjct: 534  LMGIVQDSLAGVYKLCRRDTFIDKELVQNLMLWVPNWDGVIPQPAILKPRPRWTGKQIIS 593

Query: 583  LIIPKQINLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIH 639
            ++IP +I+L+ +     DN   D G+L        I+ GEL+ G L KK++G + G +IH
Sbjct: 594  MVIPPEISLY-SKEDKLDNPRHDAGLL--------IQSGELMYGLLKKKSVGAAAGGIIH 644

Query: 640  VIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVK 699
            + + E+GP+ A  FL   Q +V YWLL   FSIGIGDT+ D  T+  I + I + K  V 
Sbjct: 645  LCYNELGPEGAMAFLNGVQQVVTYWLLNTGFSIGIGDTVPDKATINKIQEHIDEHKAEVA 704

Query: 700  NLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGS 759
             L  QA    LE  PG  +  +FENKV+  LN ARD+AG+S  KSL +SNN   M  +GS
Sbjct: 705  RLTAQATANELEALPGMNVRATFENKVSMALNMARDQAGTSTMKSLKDSNNAVTMADSGS 764

Query: 760  KGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQ 819
            KGS INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP 
Sbjct: 765  KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 824

Query: 820  EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGED 879
            EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGDVIQFLYGED
Sbjct: 825  EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDVIQFLYGED 884

Query: 880  GMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVF 937
            G+D++ IE Q L ++KM  + F+  +R ++    E +  +Y   EY ++L   +   ++ 
Sbjct: 885  GLDAMCIEKQRLGTIKMSNAAFESQYRLDLANPPEWFRKDY---EYGNELAGDRASMELL 941

Query: 938  DAEVQKLEADRYQLATEIATS--GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEV 995
            D E   L ADR +L  +I  S  G+    LP+N+ R+I +A++ F +     S++ P +V
Sbjct: 942  DMEWDALVADR-RLVRDINKSKMGEEMMQLPLNIGRIIESAKRVFNIRETDRSNLRPSDV 1000

Query: 996  VEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVI 1055
            +  V  L   +++V G DP+SVEA  NAT+ F  LLRS  A + ++  HRL + AF  VI
Sbjct: 1001 ITTVQNLLANMQIVRGTDPISVEADYNATILFKALLRSRLAFREIVYVHRLNKLAFNHVI 1060

Query: 1056 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1115
            GE+++R+ ++ V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N
Sbjct: 1061 GELQNRWDRAFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILN 1120

Query: 1116 VAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEED 1175
            +AK IKTPS++V+L   +  T+E+AK ++  +EYT LRSVT  TE++YDP+   T I ED
Sbjct: 1121 LAKNIKTPSMAVYLDTKL-GTQEQAKKLRSLVEYTNLRSVTSVTEIYYDPEVQATNIAED 1179

Query: 1176 VEFVKSYYEMPDEDIAPEKI---SPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLT 1232
            V+ V+SY+ +PD+  A + I   S WLLRI L+R+ ++DK++ +  VA  I +E+ +DL 
Sbjct: 1180 VDMVESYFMIPDD--AQDTIHRQSRWLLRITLDRQKLLDKEIKIDDVAACIKEEYSNDLA 1237

Query: 1233 CIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------ 1286
             IF+D+NAD+ ++RIR +     K E +D   EDDV LK++E+++L  M LRGV      
Sbjct: 1238 IIFSDNNADEQVIRIRTIRQSDDKDEDSDTKIEDDVMLKRLEAHLLDTMTLRGVPGIERA 1297

Query: 1287 -----------------------------------NLLAVMCHEDVDARRTTSNHLIEII 1311
                                                L  V+    VD  RT SN L +I 
Sbjct: 1298 FLTKGTRLVEDEDGSELALKDNPKCTQWYLDTSGSALREVLAVPGVDPTRTYSNDLYQIT 1357

Query: 1312 EVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP 1371
            EV G+EAVR AL+ EL  V++FDGSYVN+RH+A+LCD MTYRG + A+TRHGINR DTG 
Sbjct: 1358 EVFGVEAVRSALVKELTNVLAFDGSYVNHRHIALLCDIMTYRGVISAVTRHGINRADTGA 1417

Query: 1372 MMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL 1431
            +MRCSFEETV+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  +YL+ +ML+  I  
Sbjct: 1418 LMRCSFEETVEILLEAAATGELDDCRGISENVMLGQLAPMGTGNFDVYLDPKMLETVIS- 1476

Query: 1432 QLPSYMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYL---------FSPNLRLSPVTD 1478
               +   GL  GM        G  TPY  G  M   GYL         FSP       T 
Sbjct: 1477 --DNSRMGLMPGMPTKEGEGEGAATPYDSGSPMGDSGYLSMASPAAGNFSPIQGAGSETP 1534

Query: 1479 AQF-SPYVGGM----AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP--GYSPTSP 1531
              F + Y GG     + SP S    SP S   SP+SP +S    GYSP+SP  GYSPTSP
Sbjct: 1535 TGFNTEYGGGFGANGSMSPYSRGATSPFST--SPTSP-FSAGMGGYSPSSPNTGYSPTSP 1591

Query: 1532 GY-----------------------------SPTSPTYSPSSPGYSPTSPA----YSPTS 1558
                                           SP SP YSP+SP YSPTSP     YSPTS
Sbjct: 1592 MLDGGARYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTS 1651

Query: 1559 PSY--SPTSPSYSPTSPSYSPTSPSYSPTSP------------------SYSPTSPSYSP 1598
            P+   SPTSPSYSP SP+YSP SP++    P                  +YSPTSPS+  
Sbjct: 1652 PAQFNSPTSPSYSPASPNYSPASPNFQGAGPTSPSYSPASPSWSPTSPDAYSPTSPSFGR 1711

Query: 1599 T-SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
            +     SPTSP YSPTSP +SP +P  S +       +  YSP+SP+
Sbjct: 1712 SPGQQQSPTSPGYSPTSPQFSPRTPGPSGSGGGSGTGN-QYSPSSPN 1757



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 125/296 (42%), Positives = 151/296 (51%), Gaps = 64/296 (21%)

Query: 1528 PTSPGYSPTSPT-YSPSSP-GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            PT  G    + T Y   SP G S      SP + ++SP   + S T   ++         
Sbjct: 1488 PTKEGEGEGAATPYDSGSPMGDSGYLSMASPAAGNFSPIQGAGSETPTGFNTEYGGGFGA 1547

Query: 1586 SPSYSPTSPSYSPTSP-SYSPTSPAYSPTSPAYSPTSP--AYSPTSPSYSPTSPSYSPTS 1642
            + S SP S     TSP S SPTSP +S     YSP+SP   YSPTSP       +   TS
Sbjct: 1548 NGSMSPYS--RGATSPFSTSPTSP-FSAGMGGYSPSSPNTGYSPTSPMLD--GGARYATS 1602

Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT----YSPTSPSYNPQS 1698
            PS+SP+SPS+SPTSP   PTSPA    SP YSPTSPSYSPTSPT    YSPTSP      
Sbjct: 1603 PSFSPSSPSFSPTSPMLRPTSPA----SPNYSPTSPSYSPTSPTSPRHYSPTSP------ 1652

Query: 1699 AKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTS------------------SSYSPTSP 1739
            A+++     SP+SP  SPASP YSP SPN+                       +YSPTSP
Sbjct: 1653 AQFN-----SPTSPSYSPASPNYSPASPNFQGAGPTSPSYSPASPSWSPTSPDAYSPTSP 1707

Query: 1740 SY--------SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
            S+        SP+SP YSP+SP         +SP +P  S S G S +   YSPSS
Sbjct: 1708 SFGRSPGQQQSPTSPGYSPTSP--------QFSPRTPGPSGSGGGSGTGNQYSPSS 1755


>gi|367052355|ref|XP_003656556.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
 gi|347003821|gb|AEO70220.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
          Length = 1751

 Score = 1618 bits (4191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 877/1776 (49%), Positives = 1163/1776 (65%), Gaps = 175/1776 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            F +S A +  ++ +QFG+LSP+EI+ MSV  + + ET +  R KP+ GGL+DP LG++DR
Sbjct: 6    FAHSSAPIRTIKEIQFGLLSPEEIKGMSVCHVLYPETMDETRTKPRDGGLNDPLLGSVDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TCT NM+ECPGHFGH+ELA+P++H GF++    ++  VC NCS++LAD  D ++ 
Sbjct: 66   QFKCKTCTENMSECPGHFGHIELARPVYHPGFIRRTKKLLEIVCHNCSRVLADRSDPQYA 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEG 182
             A++IR+PK R K++ D CK+K +C+     +    D    L    GGCG  QP +  + 
Sbjct: 126  AAMRIRDPKVRFKRVWDICKSKRRCDNDPPKNAEDGDSAGGLLGGHGGCGNIQPVIRQQA 185

Query: 183  MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
            + +   ++ + ++    ++       K+ +T E  L + +R+SD++   +GLN   ARP+
Sbjct: 186  LTLWGHFETKDEEGAKNKE-------KKIITPEMALNIFRRMSDQEMVDIGLNISQARPE 238

Query: 243  WMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            WMI+ V             +      +R  DDLT++L  IIR N N+R+    G+P HII
Sbjct: 239  WMIITVLPVPPPPVRPSISMDGTGTGLRNEDDLTYKLGDIIRANGNVRQAIAEGSPQHII 298

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            ++F  LLQ+H+ATY DN++ GQP+A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSA
Sbjct: 299  TDFENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSA 358

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVIT D  I++D++GVP SIA  LTYPETVTPYNI +L + V+ GP+  PG   A++II
Sbjct: 359  RTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIAKLTQFVQNGPNEHPG---ARFII 415

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            R DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR+++MPYS
Sbjct: 416  RSDGTRIDLRHHRRATGIQLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHRVRVMPYS 475

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL MVP  IVSPQ N P+MGIVQD
Sbjct: 476  TFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQD 535

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL G  K+ +RD F+ K+  MNI++W  D+DG +P P I KPRP WTGKQ+ ++IIPK I
Sbjct: 536  TLAGVYKLCRRDVFLTKEQVMNIMLWVPDWDGIIPLPAIFKPRPRWTGKQIISMIIPKII 595

Query: 590  NLFRTAAW----HADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            N+   +      H   D G+L        I++GEL+ G L KK++G + G ++H+ + E+
Sbjct: 596  NIHMNSDQPDKDHPFKDDGLL--------IQQGELMFGLLSKKSVGATGGGIVHLCYNEL 647

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP  A  FL   Q +VNYWLL N  SIGIGDTI DAKT+E +   I   K  V+ L +QA
Sbjct: 648  GPQGAMDFLNGCQRVVNYWLLHNGHSIGIGDTIPDAKTIELVQKHIDDEKEEVRRLTQQA 707

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG  + E+FENKV+  LN ARD+AG++ +KSL + NN   M  +GSKGS IN
Sbjct: 708  TNNELEPLPGMNIRETFENKVSTALNKARDKAGTTTEKSLKDLNNAVTMARSGSKGSAIN 767

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHA
Sbjct: 768  ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHA 827

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED    YDGTVRNSLGD+IQF+YGEDG+D V 
Sbjct: 828  MAGREGLIDTAVKTAETGYIQRRLVKALEDAEAHYDGTVRNSLGDIIQFIYGEDGLDGVA 887

Query: 886  IESQTLDSLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
            IE Q +D + +    FDK FR + MDEE+        E+  ++ +   ++ + D E ++L
Sbjct: 888  IEKQRVDHMNLSNKLFDKRFRLDVMDEESSAAALDALEFGREMASDPMVQQLLDQEYEQL 947

Query: 945  EADRYQLATEI--ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
             ADR +L  EI     G+ +  LP+N+ R+I  A+K FKVD    SD+ P +V+ AV  L
Sbjct: 948  LADR-KLLREINRRKRGEDNMQLPLNVARIIETAKKLFKVDDSHRSDLTPKDVIPAVRAL 1006

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
             +RL VV G D +S EA  NATL F I LRS  A KR+  E R+ + AFE ++GE+E+R+
Sbjct: 1007 LDRLVVVRGTDAISKEADYNATLLFKIQLRSRLAFKRLAVEQRINKLAFEHILGELENRW 1066

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             +S+VAPGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVAK IKT
Sbjct: 1067 SRSMVAPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKDIKT 1126

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS+ V+L    N+T+E AK ++ A+E+T+LRSVT  TE++YDPD   T I ED + V+SY
Sbjct: 1127 PSMVVYLD-SENATQEDAKRLRNAVEHTSLRSVTAVTEIYYDPDITSTNIPEDFDMVESY 1185

Query: 1183 YEMPD--EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
            + +PD  +  + E  S W+LR+ L+R+ M+DK L +  VA++I +E+  D+  IF+D+NA
Sbjct: 1186 FLIPDSSDQDSIENQSRWILRLTLDRQKMLDKGLRVEDVAQRIKEEYRKDVAVIFSDNNA 1245

Query: 1241 DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-------------- 1286
            +++++RIR++  +  K E  ++  EDDV LK++E ++L    LRGV              
Sbjct: 1246 EEMVIRIRVIRQDDDKDEDGNKIIEDDVMLKRLEKHLLDHCTLRGVVGIERAFLNKGTKL 1305

Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                        L  V+  E VD +RT++N L +I++V GIEA 
Sbjct: 1306 VERADGSQVANKDAPECMEWYLDTQGTALREVLTIEGVDTKRTSTNDLYQIVDVFGIEAA 1365

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R ALL EL  V++FDGSYVN+RHLA+L D MTYRG + A+TRHGINR DTG +MRCSFEE
Sbjct: 1366 RAALLQELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMRCSFEE 1425

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEG 1439
            TV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG   + L+ +ML+  I     +   G
Sbjct: 1426 TVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFDVLLDPKMLETVIS---DNSRMG 1482

Query: 1440 LEFGMTPARSPVSG--TPYHDG--MMSPGYL--FSPNLRLSPVTDAQFSPYVGGMAFSPT 1493
            L  GMT   S + G  TPY  G  M   GYL  +SP +         FSP  GG + SP+
Sbjct: 1483 LMPGMTIKGSQLEGAATPYDTGSPMADNGYLGSYSPTM-------GNFSPIQGGGSDSPS 1535

Query: 1494 S-----SPGYSPSSPG-YSPSSPGYSPTSPGYSPTSP----GYSPTSP-GYSPTSPTY-- 1540
                    G+  S+   YS S    SP S   SPTSP    GYSP+SP GYSPTSP    
Sbjct: 1536 GFGTEYGGGFGSSTVNPYSTSPRATSPFST--SPTSPFGYGGYSPSSPAGYSPTSPLIDA 1593

Query: 1541 ---------------------------SPSSPGYSPTSPAYSPTSPS----YSPTSPS-- 1567
                                       SP+SP YSPTSP+YSP SP+    YSPTSP+  
Sbjct: 1594 GGRYASSPQFSPSSPSFSPTSPMLRPGSPTSPNYSPTSPSYSPASPAATRHYSPTSPAQF 1653

Query: 1568 ---------------------YSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT-SPSYS 1604
                                    TSPSYSP SP++SPTSP +YSPTSPS+  +     S
Sbjct: 1654 NSPTSPSYSPTSPSYSPASPNLHATSPSYSPASPTWSPTSPDAYSPTSPSFQRSPGQQMS 1713

Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPS---YSPTSPS 1637
            PTSP YSPTSP++SP +P   P   +   YSPTSP+
Sbjct: 1714 PTSPGYSPTSPSFSPRTPGRGPAGGNGDQYSPTSPT 1749



 Score =  104 bits (259), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 93/240 (38%), Positives = 112/240 (46%), Gaps = 92/240 (38%)

Query: 1588 SYSPTSPSYSPT--------------------SPSYSPTSPAYSPTSP-AYSPTSP---- 1622
            SYSPT  ++SP                     S + +P S +   TSP + SPTSP    
Sbjct: 1515 SYSPTMGNFSPIQGGGSDSPSGFGTEYGGGFGSSTVNPYSTSPRATSPFSTSPTSPFGYG 1574

Query: 1623 AYSPTSPS-YSPTSPSY-----------------------------SPTSPSYSPTSPSY 1652
             YSP+SP+ YSPTSP                               SPTSP+YSPTSPSY
Sbjct: 1575 GYSPSSPAGYSPTSPLIDAGGRYASSPQFSPSSPSFSPTSPMLRPGSPTSPNYSPTSPSY 1634

Query: 1653 SPTSPS----YSPTSPA-----------------------YSPTSPGYSPTSPSYSPTSP 1685
            SP SP+    YSPTSPA                          TSP YSP SP++SPTSP
Sbjct: 1635 SPASPAATRHYSPTSPAQFNSPTSPSYSPTSPSYSPASPNLHATSPSYSPASPTWSPTSP 1694

Query: 1686 -TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSS---YSPTSPS 1740
              YSPTSPS+     + SP    SP+SP  SP SP +SP +P   P   +   YSPTSP+
Sbjct: 1695 DAYSPTSPSF-----QRSPGQQMSPTSPGYSPTSPSFSPRTPGRGPAGGNGDQYSPTSPT 1749



 Score = 99.4 bits (246), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/234 (39%), Positives = 113/234 (48%), Gaps = 88/234 (37%)

Query: 1623 AYSPTSPSYSPT------SPS-----------------YS----PTSP-SYSPTSP---- 1650
            +YSPT  ++SP       SPS                 YS     TSP S SPTSP    
Sbjct: 1515 SYSPTMGNFSPIQGGGSDSPSGFGTEYGGGFGSSTVNPYSTSPRATSPFSTSPTSPFGYG 1574

Query: 1651 SYSPTSPS-YSPTSPAY-----------------------------SPTSPGYSPTSPSY 1680
             YSP+SP+ YSPTSP                               SPTSP YSPTSPSY
Sbjct: 1575 GYSPSSPAGYSPTSPLIDAGGRYASSPQFSPSSPSFSPTSPMLRPGSPTSPNYSPTSPSY 1634

Query: 1681 SPTSPT----YSPTSPS-YNPQSAK----------------YSPSLAYSPSSPRLSPASP 1719
            SP SP     YSPTSP+ +N  ++                 ++ S +YSP+SP  SP SP
Sbjct: 1635 SPASPAATRHYSPTSPAQFNSPTSPSYSPTSPSYSPASPNLHATSPSYSPASPTWSPTSP 1694

Query: 1720 --YSPTSPNYSPT-SSSYSPTSPSYSPSSPTYSPSSPYN--AGGGNPDYSPSSP 1768
              YSPTSP++  +     SPTSP YSP+SP++SP +P    AGG    YSP+SP
Sbjct: 1695 DAYSPTSPSFQRSPGQQMSPTSPGYSPTSPSFSPRTPGRGPAGGNGDQYSPTSP 1748



 Score = 93.6 bits (231), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 97/231 (41%), Positives = 123/231 (53%), Gaps = 53/231 (22%)

Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP-SYSPTSP--- 1650
            SYSPT  ++SP     S  SP+   T       S + +P S S   TSP S SPTSP   
Sbjct: 1515 SYSPTMGNFSPIQGGGS-DSPSGFGTEYGGGFGSSTVNPYSTSPRATSPFSTSPTSPFGY 1573

Query: 1651 -SYSPTSPS-YSPTSPAYSPTS-----------------------PGYSPTSPSYSPTSP 1685
              YSP+SP+ YSPTSP                             PG SPTSP+YSPTSP
Sbjct: 1574 GGYSPSSPAGYSPTSPLIDAGGRYASSPQFSPSSPSFSPTSPMLRPG-SPTSPNYSPTSP 1632

Query: 1686 TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSS 1745
            +YSP SP+    +  YSP+   SP+      +  YSPTSP+YSP S +   TSPSYSP+S
Sbjct: 1633 SYSPASPA---ATRHYSPT---SPAQFNSPTSPSYSPTSPSYSPASPNLHATSPSYSPAS 1686

Query: 1746 PTYSPSSPYNAGGGNPDYSPSSP--------QYSPSA-GYSPSAPGYSPSS 1787
            PT+SP+SP         YSP+SP        Q SP++ GYSP++P +SP +
Sbjct: 1687 PTWSPTSP-------DAYSPTSPSFQRSPGQQMSPTSPGYSPTSPSFSPRT 1730


>gi|12642610|gb|AAK00309.1|AF315819_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Botryocladia
            uvarioides]
          Length = 1712

 Score = 1618 bits (4190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 887/1799 (49%), Positives = 1134/1799 (63%), Gaps = 192/1799 (10%)

Query: 76   CPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLK 135
            CPGHFGH+ELAKPM++IGF+KT LS++R VC  CSKIL    D   +  LKI  P  RL+
Sbjct: 1    CPGHFGHIELAKPMYNIGFIKTTLSVLRCVCHFCSKILCP--DATVQSLLKISKPTVRLR 58

Query: 136  KILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKK 195
              +  C    K   GD                   CG  QPK T EG ++       R++
Sbjct: 59   NAMKYCSGTKKICTGDN-----------------SCGNLQPKYTREGFRI-------RQQ 94

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
             DD  +      +K +L+AE+V  + KRISD D   LGL+P++ RP+ +IL VLP+PP  
Sbjct: 95   FDDNHEEYSKENKKPSLSAEKVYDIFKRISDRDSLALGLDPRWVRPENLILTVLPVPPLQ 154

Query: 256  VRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
            VRPS         DDLT++L  I+++N  LR  E  G  AH++ E   L+Q+H+ATY +N
Sbjct: 155  VRPSVMHGGLRNEDDLTNKLGDIVKNNNMLRDMEAQGTVAHLLREQLDLVQYHVATYMNN 214

Query: 307  ELPGQPRATQRSG-RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            E+PG  +AT R G R IKSI  R K KEGR+RGNLMGKRVDFSARTVITPDP + + ++G
Sbjct: 215  EIPGVSQATVRGGSRAIKSIGQRFKGKEGRVRGNLMGKRVDFSARTVITPDPNLLLHEVG 274

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP+SIA NLT+PETVT YN   +++LVE GP   PG   AKYI RDDGQ+++L Y+   +
Sbjct: 275  VPYSIAKNLTFPETVTSYNYAEMRKLVENGPTEYPG---AKYIERDDGQKVNLSYVADRT 331

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
              +LE+G+KV RH+ DGD+VLFNRQPSLHKMSIMGHRI+++PYSTFRLNLSVTSPYNADF
Sbjct: 332  STNLEIGFKVIRHIKDGDYVLFNRQPSLHKMSIMGHRIRVLPYSTFRLNLSVTSPYNADF 391

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS  TRAEV ELM+VP CIVSPQ N+PVMGIVQDTLLGC   T+RDTFIE
Sbjct: 392  DGDEMNLHVPQSHGTRAEVQELMLVPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFIE 451

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGI 605
            +DV MN+LM   D+DG VP+P I KPRPLWTGKQ+F+LI+P  +NL R    H D ++  
Sbjct: 452  RDVMMNLLMHVGDWDGVVPEPAIYKPRPLWTGKQIFSLILPP-VNLIRYNITHPDEEQEE 510

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
            ++ GDT V I +G+L+ G + KKT+G+S   LIHV W+E GP      +   Q LVN+++
Sbjct: 511  ISPGDTKVYISQGQLICGIVDKKTVGSSANGLIHVTWKECGPKVTAMMISQIQVLVNHYV 570

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            LQ   SIGIGDTIAD  TM  + +TI  AK  VK LIK+AQ K L   PG+ MMESFE +
Sbjct: 571  LQRGQSIGIGDTIADDDTMSNVINTIKGAKEEVKMLIKKAQMKELVLLPGKGMMESFETE 630

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            VN+VLN ARD++G+SAQKSL +SNN+K MV+AGSKGSFINISQ+ ACVGQQNVEGKRI +
Sbjct: 631  VNKVLNGARDKSGASAQKSLLKSNNIKRMVSAGSKGSFINISQICACVGQQNVEGKRIAY 690

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF  RTLPHF  DD GPESRGFVENSYLRGLTP EFFFHAMGGREGLIDTAVKT+ETGYI
Sbjct: 691  GFNGRTLPHFATDDLGPESRGFVENSYLRGLTPSEFFFHAMGGREGLIDTAVKTAETGYI 750

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRL+KAMED+MV+YDGTVRNS   V++FLYGEDGMD+  +E QTL +LKM        +
Sbjct: 751  QRRLIKAMEDVMVRYDGTVRNSANHVVEFLYGEDGMDATLLEDQTLRTLKMSDERLFDEY 810

Query: 906  RFEMDEENWNPN-----YMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGD 960
              +  +  +  +     Y+  E  D ++   +   +   E Q++  DR  L   IA SG+
Sbjct: 811  YLDPTDAKFGKDSRGRPYLDWETCDSIRQDAQAHILLRNEFQRIREDRDLLRNFIAKSGE 870

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV----------- 1009
            +  P+ VN+ R+IWNA++   + P   SD+ P++V + +  L +R +VV           
Sbjct: 871  AKRPMAVNIDRIIWNAKQAHNIRPDSVSDLTPVQVWKGIKMLLKRTRVVEIGDDQDDEDV 930

Query: 1010 ---------------PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWV 1054
                           P  DPL++E Q+NAT+ F I +RS  A K+V+  HRL   AF W+
Sbjct: 931  DDGVTDENGEMIDRKPVADPLTLETQENATMIFQIHVRSMLACKQVMVRHRLDINAFLWI 990

Query: 1055 IGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII 1114
            +GEIE+RFL ++ APGE IG +AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII
Sbjct: 991  LGEIENRFLGAIAAPGENIGAIAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII 1050

Query: 1115 NVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEE 1174
            NV+K  KTPSL+V+L+   +  K +AK +Q +L+ T L  VT +T ++YDPDP  T+IEE
Sbjct: 1051 NVSKHTKTPSLTVYLRDKYSKDKGKAKEIQASLQATNLYDVTTSTAIYYDPDPETTVIEE 1110

Query: 1175 DVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCI 1234
            D E V S+YE+ D    P  ++PWLLRI L++E+++D+ + M  +   + Q F DD+  +
Sbjct: 1111 DREMVHSFYEVED---VPSDVAPWLLRITLDKEILIDRGIGMDHIENMMQQNFGDDIHIV 1167

Query: 1235 FNDDNADKLILRIRIMNDEAPKGELNDESAEDDV-----------------FLKKIESNM 1277
             + DN ++L++R+R+ ++ A      D   E+ +                 FL+ +ES +
Sbjct: 1168 RSTDNDERLVIRLRVHDEGANIKYAEDGRREEGIDTGMDIDDEDDDDTDDAFLRTLESEL 1227

Query: 1278 LTEMAL------------------------------------RGVNLLAVMCHEDVDARR 1301
            L +M L                                     GVNL AVMCHE VD  R
Sbjct: 1228 LNKMPLGGIKDIHKVFMRQAKRQYIDKEYGKYKTDEEWVLDTDGVNLKAVMCHEAVDHTR 1287

Query: 1302 TTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITR 1361
            T SN ++EI E LGIEAVR ALL E+R VISFDG+YVNYRHL+IL D MTYRGHLMAITR
Sbjct: 1288 TMSNDIVEIFETLGIEAVREALLQEIRGVISFDGAYVNYRHLSILVDVMTYRGHLMAITR 1347

Query: 1362 HGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLN 1421
            HGINR DTGP+M+CSFEET DILL+AA F   D L+GV+ENI+LGQLAP+GTG   + LN
Sbjct: 1348 HGINRVDTGPLMKCSFEETTDILLEAATFGMRDNLQGVSENIVLGQLAPVGTGSFKMMLN 1407

Query: 1422 DEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQF 1481
            ++ML+ AIE + P+  +  +  M       SGT   D   SP             T    
Sbjct: 1408 EKMLQQAIETE-PAQQDAADGAMDQ-----SGTNSFDMAWSPAR--------GDATPGLH 1453

Query: 1482 SPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYS 1541
             P  G    +P    GY+P    ++PS  G    S    P++      SP     S + S
Sbjct: 1454 RPMDG--RTTPGLRTGYTPM---WAPSRMG----STRGGPSAFNVQQFSPSADEASFSPS 1504

Query: 1542 PSSPG-YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSP 1598
            P++PG +   + AY+P     SP      P SP     SP  S SP   S   TSP+Y P
Sbjct: 1505 PATPGNFGQNANAYTPLQ---SPRGDYMPPMSPG-GAASPYVSASPGRASPYATSPAY-P 1559

Query: 1599 TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
             SP        ++P SPAY  TSPA      +Y                 SP+ SP +  
Sbjct: 1560 QSPGSYNAGSGFAPASPAYKVTSPAPGGYGGAYQ----------------SPARSPGA-Q 1602

Query: 1659 YSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA-KYSPSLAYSPSSPRLSPA 1717
            YSPTSPA++PTSPGYS  +    P +  YSPT PSYN  ++  Y   + YSP SP     
Sbjct: 1603 YSPTSPAFTPTSPGYSSATGPGRPGTGAYSPTGPSYNAAASPGYQSGINYSPGSPHT--- 1659

Query: 1718 SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSP--SSPY--NAGG---GNPDYSPSSPQ 1769
              YSP SP ++P S    P +  YSPS+P Y+P  S+PY  NAG    GN + SP+SPQ
Sbjct: 1660 --YSPNSPVFTPRS----PAAHGYSPSTPQYNPQGSNPYGQNAGSPAPGNANQSPASPQ 1712



 Score = 93.2 bits (230), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 93/265 (35%), Positives = 123/265 (46%), Gaps = 40/265 (15%)

Query: 1553 AYSPTSPSYSPT--SPSYSPTSPSY-SPTSPSYSPT---SPSYSPTSPSYSPTSPSYSPT 1606
            A+SP     +P    P    T+P   +  +P ++P+   S    P++ +    SPS    
Sbjct: 1440 AWSPARGDATPGLHRPMDGRTTPGLRTGYTPMWAPSRMGSTRGGPSAFNVQQFSPSADEA 1499

Query: 1607 SPAYSPTSPA-YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTS 1663
            S + SP +P  +   + AY+P     SP      P SP     SP  S SP   S   TS
Sbjct: 1500 SFSPSPATPGNFGQNANAYTPLQ---SPRGDYMPPMSPG-GAASPYVSASPGRASPYATS 1555

Query: 1664 PAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPT 1723
            PAY P SPG       ++P SP Y  TSP+       Y         SP  SP + YSPT
Sbjct: 1556 PAY-PQSPGSYNAGSGFAPASPAYKVTSPAPGGYGGAYQ--------SPARSPGAQYSPT 1606

Query: 1724 SPNYSPTSSSYSPTSPSYSPSSPTYSPSSP-YNAGG------------GNPD-YSPSSPQ 1769
            SP ++PTS  YS  +    P +  YSP+ P YNA              G+P  YSP+SP 
Sbjct: 1607 SPAFTPTSPGYSSATGPGRPGTGAYSPTGPSYNAAASPGYQSGINYSPGSPHTYSPNSPV 1666

Query: 1770 YSPSAGYSPSAPGYSPSSTSQYTPQ 1794
            ++P    SP+A GYSP ST QY PQ
Sbjct: 1667 FTPR---SPAAHGYSP-STPQYNPQ 1687


>gi|378729993|gb|EHY56452.1| DNA-directed RNA polymerase II subunit A [Exophiala dermatitidis
            NIH/UT8656]
          Length = 1762

 Score = 1618 bits (4189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 882/1789 (49%), Positives = 1158/1789 (64%), Gaps = 157/1789 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            FPYS A +  V  +QFG+ S  E  +++V++IE+ ET   +R +P+  G +DP LGTIDR
Sbjct: 6    FPYSSAPLRTVEEIQFGLFSAKETERLAVIEIEYPETMDEQRLRPREKGPNDPHLGTIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
              KC TC  NM+ECPGHFG ++LA P++H GFM  V  I+ +VC NC KI A  D+ +F+
Sbjct: 66   NFKCSTCEENMSECPGHFGVIKLATPVYHYGFMGKVKKILETVCLNCGKIKA-LDNEEFR 124

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK----NKGGCGAQQPKL 178
             A+ +R+ K R   +    K +  CE       P +D ++PLK       GGCG  QP++
Sbjct: 125  HAISLRDRKRRFDAVWRLSKPRNVCEAD-----PPEDPDQPLKGPAPPKHGGCGNMQPEI 179

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
               G+++ A +KA RK  D+++  P+    K+ +  +  L   + ++DE  +++GL+  Y
Sbjct: 180  RRSGLQLWATWKA-RKGEDEEDTTPD----KKRIFPQDALNTFRTLTDETLEMMGLSLDY 234

Query: 239  ARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+WMIL  LP+PPPPV             R  DDLT +L  IIR N+ + R E +G P
Sbjct: 235  ARPEWMILSALPVPPPPVRPSISVDGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTP 294

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +   LLQ+HIATY DNE+ G  RA  +SGRPIKSI +RLK KEGR+R NLMGKRV
Sbjct: 295  DHIKVDLCDLLQYHIATYMDNEIAGLERAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRV 354

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT DP +++D++GVP SIA  LTYPETVTP+N+++LK LV  GP   PG   A
Sbjct: 355  DFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPTEHPG---A 411

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            +Y+IRD G+R+DLR+ K++S+  L+ G+KVERH+ DGD +LFNRQPSLHK S+MGHR+++
Sbjct: 412  RYVIRDTGERIDLRHHKRASEMTLQYGWKVERHIQDGDVILFNRQPSLHKESMMGHRVRV 471

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E+RAE+  L MVP  IVSPQ N P+MG
Sbjct: 472  MPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESRAELANLCMVPLNIVSPQRNGPLMG 531

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDTL G  KI +RD F+ ++  MNI++W  ++DG +PQP I+KPRP WTGKQ+ ++++
Sbjct: 532  IVQDTLCGIYKICRRDIFLTREQVMNIMLWVPEWDGVIPQPAIIKPRPRWTGKQMISMVL 591

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            P+ +NL R  A   D     + A DT + + +G L+ G   KK +GTS G +IH I+ E 
Sbjct: 592  PRALNLERLDAKGEDP---YVPANDTGLMVLEGHLMFGLFSKKFVGTSAGGVIHTIFNEF 648

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G +AA  F    Q +VNYWLL N FSIGIGDT+ D +T+  I + + + K  V+ +  +A
Sbjct: 649  GHEAAMAFFNGAQHVVNYWLLHNGFSIGIGDTVPDPETVRKIQEVVDEKKKEVEEITIRA 708

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
              + LEP PG  + ++FE+KV   LN ARD+AG+  + SL + NN   M  AGSKGS IN
Sbjct: 709  YKEDLEPSPGMNVRQTFESKVMNALNQARDQAGAVTENSLKDLNNAITMARAGSKGSTIN 768

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            I+QMTA VGQQ VEGKRIPFGF  RTLPHF KDDY   SRGFVENSYLRGLTP EFFFHA
Sbjct: 769  IAQMTAIVGQQAVEGKRIPFGFKYRTLPHFAKDDYSAPSRGFVENSYLRGLTPTEFFFHA 828

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   
Sbjct: 829  MAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGNIVQFIYGEDGLDGAH 888

Query: 886  IESQTLDSLKMKKSEFDKAFRFEM---DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQ 942
            IE+Q +D + M    F+  +  ++   D   W    +LQ    +++   EL+++FD E++
Sbjct: 889  IENQKVDIITMSDKAFNNRYAVDIMSGDTSMWR-GKLLQAR--EIQGDTELQEMFDEELE 945

Query: 943  KLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
             L   R +   ++    + S  LP+N+ R+I  AQK FK+     +D+ P   + AV +L
Sbjct: 946  ALRESR-EFLRKMGKGTEDSMQLPLNIARIIDQAQKNFKIRRGDKTDLDPRHALNAVKQL 1004

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
             +RL VV G+DP+S EAQ NATL     LRS  A KR++ EH L R AF+ VIG +ESRF
Sbjct: 1005 LDRLVVVRGDDPISKEAQSNATLLLKAQLRSRLAYKRLVLEHGLNRLAFDNVIGAVESRF 1064

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
            L +   PGEM+G +AAQSIGEPATQMTLNTFH+ GVSAKNVTLGVPRL+EI+NV++ I+T
Sbjct: 1065 LAAHANPGEMVGVLAAQSIGEPATQMTLNTFHFTGVSAKNVTLGVPRLKEILNVSQNIRT 1124

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS++V+  P     KE AK ++  +++T LRSV E  E+WYDPD   TII ED++ V+SY
Sbjct: 1125 PSMTVYQLPENAGDKEAAKLLRSRVQHTNLRSVAETCELWYDPDIQSTIIPEDLDMVESY 1184

Query: 1183 YEMPDEDIAPEKI-SPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            + +P+++ A   + S WLLRI L+R  ++DK L++  VA KI   +  DL+ IF+D NAD
Sbjct: 1185 FIIPEDNEADLSLHSKWLLRIILSRAKLLDKGLNIQDVAGKIKSTYMKDLSVIFSDINAD 1244

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            + ++RIR++N  A      ++  EDD  L++  + ML  +   GV               
Sbjct: 1245 EQVIRIRLVNSYAKD--EEEDRKEDDEVLRRFMNEMLDHLTFHGVPGVSRAFIDQKSRAI 1302

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                          V+  E VD  RT +N   EI EVLGIEA R
Sbjct: 1303 IDDDNSVFMSKSDPRCNEYVLETSGSAFAKVLAIEGVDTTRTYTNRFTEIFEVLGIEATR 1362

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             A+L EL  V+SFDGSYVN RHL ILCD MT RG++MA+TRHGIN++DTG +MRCSFE+T
Sbjct: 1363 AAILRELTQVLSFDGSYVNARHLGILCDVMTARGYVMAVTRHGINKSDTGALMRCSFEQT 1422

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA   E D  RGV+EN++LGQ+AP+GTG   + L++ ML   +       + G 
Sbjct: 1423 VEILLEAAAAGELDDCRGVSENLILGQVAPVGTGAMEILLDENMLSQVVSDNANLGLGG- 1481

Query: 1441 EFGMTPARSPVSG--TPYHDG--MMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
              G+  ++  + G  TPY  G  M   GYL SP+        A FSP     A +P    
Sbjct: 1482 AIGVKGSQQLLDGAATPYDMGSPMQDTGYLGSPDY------GASFSPIRASGAETPGGFT 1535

Query: 1497 GYSP---SSPGYSP----SSPGYSPTSP--GYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
             Y P    + G+SP    S  GYSP SP  G SPTSPG+SPT+ GYSPTSP +  +SPG+
Sbjct: 1536 DYQPGFGGAGGFSPYGARSPGGYSPASPFGGTSPTSPGFSPTA-GYSPTSPMFGATSPGF 1594

Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSY-SPTSPSYS 1604
             PTSP++SP SP+++PTSP+YSPTSP Y  SPTSPSYSPTSP+YSPTSP+Y SPTSPSYS
Sbjct: 1595 GPTSPSFSPASPAFTPTSPAYSPTSPGYQASPTSPSYSPTSPNYSPTSPAYGSPTSPSYS 1654

Query: 1605 PTSPAY------SPTSPAYSPTSPAYSPTSPSYSPTSP---------------------- 1636
            PTSPA+      SPTSP YSPTSP YSPTSP Y  T                        
Sbjct: 1655 PTSPAFSPTSPTSPTSPVYSPTSPMYSPTSPMYGGTGNKQSPTSPSYSPTSPTYSPTSPT 1714

Query: 1637 --------------SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
                          + SPTSP   PT    S TSP YSP SP YSPTSP
Sbjct: 1715 SPTSPSYSPTSPMYNASPTSPQGRPT----SVTSPQYSPNSPQYSPTSP 1759



 Score =  149 bits (376), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/273 (41%), Positives = 143/273 (52%), Gaps = 77/273 (28%)

Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA-YSPTSP- 1622
            SP Y     S+SP   S + T   ++   P +      +SP    Y   SP  YSP SP 
Sbjct: 1513 SPDYGA---SFSPIRASGAETPGGFTDYQPGFGGAG-GFSP----YGARSPGGYSPASPF 1564

Query: 1623 -AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY- 1680
               SPTSP +SPT+  YSPTSP +  TSP + PTSPS+SP SPA++PTSP YSPTSP Y 
Sbjct: 1565 GGTSPTSPGFSPTA-GYSPTSPMFGATSPGFGPTSPSFSPASPAFTPTSPAYSPTSPGYQ 1623

Query: 1681 -SPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
             SPTSP+YSPTSP+Y+P S  Y                   SPTSP+YSPTS ++SPTSP
Sbjct: 1624 ASPTSPSYSPTSPNYSPTSPAYG------------------SPTSPSYSPTSPAFSPTSP 1665

Query: 1740 S------YSPSSPTYSPSSPYNAGGGNP-------------------------------- 1761
            +      YSP+SP YSP+SP   G GN                                 
Sbjct: 1666 TSPTSPVYSPTSPMYSPTSPMYGGTGNKQSPTSPSYSPTSPTYSPTSPTSPTSPSYSPTS 1725

Query: 1762 ---DYSPSSPQYSPSA----GYSPSAPGYSPSS 1787
               + SP+SPQ  P++     YSP++P YSP+S
Sbjct: 1726 PMYNASPTSPQGRPTSVTSPQYSPNSPQYSPTS 1758



 Score = 75.1 bits (183), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 75/154 (48%), Gaps = 35/154 (22%)

Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS-YNPQSAK 1700
            SP Y     S+SP   S + T   ++   PG+      +SP    Y   SP  Y+P S  
Sbjct: 1513 SPDYGA---SFSPIRASGAETPGGFTDYQPGFGGAG-GFSP----YGARSPGGYSPAS-- 1562

Query: 1701 YSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGN 1760
              P    SP+SP  SP + YSPTSP +  TS  + PTSPS+SP+SP ++P+SP       
Sbjct: 1563 --PFGGTSPTSPGFSPTAGYSPTSPMFGATSPGFGPTSPSFSPASPAFTPTSP------- 1613

Query: 1761 PDYSPSSPQYSPSAGYSPSAPGYSPSSTS-QYTP 1793
                           YSP++PGY  S TS  Y+P
Sbjct: 1614 --------------AYSPTSPGYQASPTSPSYSP 1633


>gi|326480447|gb|EGE04457.1| DNA-directed RNA polymerase II largest subunit [Trichophyton equinum
            CBS 127.97]
          Length = 1712

 Score = 1616 bits (4185), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 887/1773 (50%), Positives = 1167/1773 (65%), Gaps = 177/1773 (9%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTI 60
             RFPYS A++  ++ +QFG+LSP+EI++MSV  +E+ ET   +R +P+  GL+DPRLGTI
Sbjct: 4    VRFPYSKAQLRTIKEIQFGLLSPEEIKRMSVCHVEYPETMDDQRQRPREKGLNDPRLGTI 63

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DR  +C TC   + +CPGHFGH+EL+ P+FHIGF+  +  ++ +VC NC KI A+  D K
Sbjct: 64   DRNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQK 123

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGG--DEIDVPGQDGEEPLKKNKGGCGAQQPKL 178
            +  AL+ R+PK R   I    K+   CE    +E D   ++  +P++ + GGCG  QP++
Sbjct: 124  YLDALRFRDPKKRFDAIWRLSKDILICEADPPEEDDPFAKESSKPVQGH-GGCGNVQPQV 182

Query: 179  TIEGMKMIAEYKAQRKKN---DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
              EG+ ++  +K  + ++   D++ Q PE    K+ +T +  L + + IS+ED +L+GL+
Sbjct: 183  RKEGITLMGTWKPSKMRDMMDDNEIQQPE----KKQITPQMALTIFRNISEEDVRLMGLS 238

Query: 236  PKYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WMI+ VLP+PPPPV             R  DDLT++LA IIR N+N+ R E+ 
Sbjct: 239  NDYARPEWMIITVLPVPPPPVRPSVLVGGSGTGQRGEDDLTYKLAEIIRANQNVTRCEQE 298

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P H++ EF  LLQ+H+ATY DN++ G P+A Q+S RP+K+I  RLK KEGR+R NLMG
Sbjct: 299  GSPEHVVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMG 358

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT DP +++D++GVP SIA  LTYPE VTPYNI RL +LV+ GP   PG 
Sbjct: 359  KRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNGPDVHPG- 417

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
              A+++IR  G+R+DLR+ K     + L+ G+KVERHL DGDF+LFNRQPSLHK S+M H
Sbjct: 418  --ARHVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSLHKESMMSH 475

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
            R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L +VP  IVSPQ N 
Sbjct: 476  RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVSPQRNG 535

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
            P+MGIVQDTL G  KI +RD F+ K+  MN+L+W  D+DG +PQP ILKPRP W+GKQ+ 
Sbjct: 536  PLMGIVQDTLCGIYKICRRDVFLTKEQVMNVLLWVPDWDGVLPQPAILKPRPRWSGKQMI 595

Query: 582  NLIIPKQINLFRTAAWHADNDKGILTA-----GDTLVRIEKGELLSGTLCKKTLGTSTGS 636
            ++++P  +NL R      D DK  ++       D  V +  GEL+ G   KKT+G S G 
Sbjct: 596  SMVLPSGLNLLRI-----DKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVGASGGG 650

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            ++H I+ E GPDAA  F    Q +VNYWLL N FSIGIGDTI D +T++ I + +   K 
Sbjct: 651  VVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGDTIPDLETIQKIENAVRVRKE 710

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
             V ++   A + +LE  PG  + E+FE+KV++ LN ARDEAG++ +KSL +SNN   M  
Sbjct: 711  EVDSITASATENTLEALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMAR 770

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
            +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGL
Sbjct: 771  SGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGL 830

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
            TP EFFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD++QFLY
Sbjct: 831  TPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIVQFLY 890

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEEN-WNPNYMLQ--EYIDDLKTIKE 932
            GEDG+D   IE+Q +D +K    +F   FR + MD E   +P+ + Q  E   D++  K 
Sbjct: 891  GEDGLDGQCIENQRVDVIKCSDEQFRNRFRVDLMDPERLLSPDILEQATEIAGDIEVQKH 950

Query: 933  LRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHP 992
            L    D E ++L  DR  L T +    D    LP+N++R++ +A+ TF++     SD+HP
Sbjct: 951  L----DEEWEQLLKDRAFLRT-VVKEDDEMMQLPINIQRILESAKTTFRIRDGTISDLHP 1005

Query: 993  MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1052
             EVV  V +L +RL VV G+D LS EAQ++ATL F   LRS  A +R++ E+ L + AF+
Sbjct: 1006 AEVVPQVRQLLDRLLVVRGDDALSREAQESATLLFKAQLRSRLAFRRLVVEYSLNKLAFQ 1065

Query: 1053 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1112
             V+G IESRF ++   PGEM+                                GVPRL+E
Sbjct: 1066 HVLGAIESRFGKAAANPGEMV--------------------------------GVPRLKE 1093

Query: 1113 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1172
            I+NVA  IKTPS++V+  P     KE AK ++  +E+T+LRSVTE+TE++YDP+   T+I
Sbjct: 1094 ILNVATNIKTPSMTVYQAPECRMNKESAKQLRSIVEHTSLRSVTESTEIYYDPNIQSTVI 1153

Query: 1173 EEDVEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDD 1230
            E DV+ V+SY+ +P ED+A +  + S WLLRI L+R  ++DK L++  VA KI + +  D
Sbjct: 1154 ENDVDMVESYFIIP-EDVADDSSRQSKWLLRIILSRPKLLDKGLTVQDVATKIKEAYPQD 1212

Query: 1231 LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---- 1286
            +  IF+D+NAD+ ++RIR + D  PK + +D+  E DV LKK+ES++L  + LRGV    
Sbjct: 1213 IAVIFSDNNADEQVVRIRQIQD--PKQDEDDDDTEYDVTLKKLESHLLDTLTLRGVPGID 1270

Query: 1287 -------------------------------------NLLAVMCHEDVDARRTTSNHLIE 1309
                                                  L  V+    +DA RT SN  +E
Sbjct: 1271 RAFINEKSRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRTYSNQFVE 1330

Query: 1310 IIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1369
            I+EV GIEA R ALL EL  V++FDGSYVN+RHLA+L D MT RG LMA+TRHGINR DT
Sbjct: 1331 ILEVFGIEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADT 1390

Query: 1370 GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI 1429
            G +MRCSFEETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+  +YL+  ML   +
Sbjct: 1391 GALMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQSMLMGVV 1450

Query: 1430 ELQLPSYMEGLE-FGMT---PARSPVSGTPYHDGMMSPGYLFS--PNLRLSPVTDAQFSP 1483
                     G E  GM     A    SG+P  + M    Y+ S  P+ + SPV  A    
Sbjct: 1451 SNNAGLGAMGEEPKGMLSDGAATQYDSGSPMQENM----YISSPDPDSQFSPVRQAGSEN 1506

Query: 1484 YVGGMAFSPTSSPGYSPSSP-----GYSPSSP-GYSPTSPGYSPTSPGYSPTSPGYSPTS 1537
             VG   + P S  G+SP  P     GYSPSSP   SPTSP YSP+S GYSPTSPG S TS
Sbjct: 1507 TVGFADYQPPSYGGFSPHEPRSPGGGYSPSSPFNTSPTSPAYSPSS-GYSPTSPGMSITS 1565

Query: 1538 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY----SPTSPSYSPTSPS------------ 1581
            P +  SSP +SP SP+++PTSP+YSPTSP Y    SPTSPSYSPTSP             
Sbjct: 1566 PRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPSYSPTS 1624

Query: 1582 ---------YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP-SY 1631
                     +SPTSPSYSPTSP+   T    SPT    SPTSP Y+PTSP +SPTSP +Y
Sbjct: 1625 PSFSPASPVFSPTSPSYSPTSPALGGTGRHLSPT----SPTSPKYTPTSPGWSPTSPEAY 1680

Query: 1632 SPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPT 1662
            SPTSP++  SPTSP   PTSP YSPTSP+++PT
Sbjct: 1681 SPTSPNFSGSPTSPG-GPTSPGYSPTSPTFNPT 1712



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 115/237 (48%), Positives = 141/237 (59%), Gaps = 52/237 (21%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSP-SYSPTSPSY 1603
            +SP   A S  +  ++   P      PSY   SP + P SP   YSP+SP + SPTSP+Y
Sbjct: 1496 FSPVRQAGSENTVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1548

Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSY 1659
            SP+S  YSPTSP  S TSP +  +SP++SP SPS++PTSP+YSPTSP Y    SPTSPSY
Sbjct: 1549 SPSS-GYSPTSPGMSITSPRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1606

Query: 1660 SPTSPA---------------------YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
            SPTSP                      +SPTSP YSPTSP+   T    SPTSP+     
Sbjct: 1607 SPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRHLSPTSPT----- 1661

Query: 1699 AKYSPSLAYSPSSPRLSPASP--YSPTSPNY--SPTSSSYSPTSPSYSPSSPTYSPS 1751
                 S  Y+P+SP  SP SP  YSPTSPN+  SPTS    PTSP YSP+SPT++P+
Sbjct: 1662 -----SPKYTPTSPGWSPTSPEAYSPTSPNFSGSPTSPG-GPTSPGYSPTSPTFNPT 1712



 Score =  155 bits (391), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/235 (47%), Positives = 139/235 (59%), Gaps = 47/235 (20%)

Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA--YSPTSP-AYSPTSPAY 1624
            +SP   + S  +  ++   P      PSY   SP + P SP   YSP+SP   SPTSPAY
Sbjct: 1496 FSPVRQAGSENTVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1548

Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY----SPTSPSY 1680
            SP+S  YSPTSP  S TSP +  +SP++SP SPS++PTSPAYSPTSPGY    SPTSPSY
Sbjct: 1549 SPSS-GYSPTSPGMSITSPRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1606

Query: 1681 SPTSP---------------------TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
            SPTSP                      +SPTSPSY+P S    P+L  +         SP
Sbjct: 1607 SPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTS----PALGGTGRH-----LSP 1657

Query: 1720 YSPTSPNYSPTSSSYSPTSP-SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
             SPTSP Y+PTS  +SPTSP +YSP+SP +S S     G  +P YSP+SP ++P+
Sbjct: 1658 TSPTSPKYTPTSPGWSPTSPEAYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFNPT 1712



 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/232 (46%), Positives = 142/232 (61%), Gaps = 40/232 (17%)

Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA--YSPTSP-AYSPTSPSY 1631
            +SP   + S  +  ++   P      PSY   SP + P SP   YSP+SP   SPTSP+Y
Sbjct: 1496 FSPVRQAGSENTVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1548

Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY----SPTSPTY 1687
            SP+S  YSPTSP  S TSP +  +SP++SP SP+++PTSP YSPTSP Y    SPTSP+Y
Sbjct: 1549 SPSS-GYSPTSPGMSITSPRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1606

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS----------SSYSPT 1737
            SPTSP ++P S  YSP+      +  +     +SPTSP+YSPTS          S  SPT
Sbjct: 1607 SPTSPGFSPTSPSYSPTSPSFSPASPV-----FSPTSPSYSPTSPALGGTGRHLSPTSPT 1661

Query: 1738 SPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY--SPSAGYSPSAPGYSPSS 1787
            SP Y+P+SP +SP+SP         YSP+SP +  SP++   P++PGYSP+S
Sbjct: 1662 SPKYTPTSPGWSPTSP-------EAYSPTSPNFSGSPTSPGGPTSPGYSPTS 1706



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 101/208 (48%), Gaps = 66/208 (31%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG--YSPTSP-SYSPTSPTY 1687
            +SP   + S  +  ++   P      PSY   SP + P SPG  YSP+SP + SPTSP Y
Sbjct: 1496 FSPVRQAGSENTVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1548

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY------ 1741
            SP+S               YSP+SP +S  SP   +SP +SP S S++PTSP+Y      
Sbjct: 1549 SPSS--------------GYSPTSPGMSITSPRFISSPAFSPASPSFAPTSPAYSPTSPG 1594

Query: 1742 -----SPSSPTYSPSSPYNAGGGNPD-------------YSPSSPQYSPSA--------- 1774
                 SP+SP+YSP+SP  +                   +SP+SP YSP++         
Sbjct: 1595 YGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRH 1654

Query: 1775 ---------GYSPSAPGYSPSSTSQYTP 1793
                      Y+P++PG+SP+S   Y+P
Sbjct: 1655 LSPTSPTSPKYTPTSPGWSPTSPEAYSP 1682


>gi|320586791|gb|EFW99454.1| DNA-directed RNA polymerase 2 largest subunit [Grosmannia clavigera
            kw1407]
          Length = 1745

 Score = 1616 bits (4184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 869/1771 (49%), Positives = 1145/1771 (64%), Gaps = 184/1771 (10%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKP--GGLSDPRLGTIDR 62
            F +S A +  +  +QF ++SP+EI+ +SV  I + E  +  K KP  GG++DP LG++DR
Sbjct: 6    FAHSSAPLKTIEEIQFSMMSPEEIKNLSVAHIVYPEAMDETKTKPRDGGVNDPLLGSVDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TCT NM+ECPGHFGH+ELAKP++H GF+K    ++  VC NCS +LAD  D +F 
Sbjct: 66   QFKCKTCTENMSECPGHFGHIELAKPVYHPGFIKKTKKVLEIVCHNCSMVLADRSDPEFV 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD-------GEEPLKKNKGGCGAQQ 175
             A+  R+PK R +++ + CK K +CE   + +    D        ++P   N GGCG  Q
Sbjct: 126  AAVNTRDPKARFQRVWECCKKKRRCENEAKAEEEEFDPNPSKIAKQQP--HNHGGCGNMQ 183

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P +   G+++ + ++ +R +    ++       K+ LTAE  L +L+RIS  D + +GLN
Sbjct: 184  PAVRQTGLQLWSHFEVERDEGGKTKE-------KKLLTAEVALNILRRISTADIRDMGLN 236

Query: 236  PKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WM+L V             +      +R  DDLT +L  IIR N N+R+    
Sbjct: 237  VDYARPEWMVLTVLPVPPPPVRPSISMDGTGTGMRNEDDLTFKLGDIIRANNNVRQAINE 296

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+PAHI S+F QLLQ+H+ATY DN++   PRA Q+SGRP+KSI +RLK KEGR+RGNLMG
Sbjct: 297  GSPAHISSDFEQLLQYHVATYMDNDIAAIPRALQKSGRPVKSIRARLKGKEGRLRGNLMG 356

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT D  I++D++GVP SIA  LTYPETVTPYNI RL +LV+ GP+  PG 
Sbjct: 357  KRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIGRLHQLVQNGPNEHPG- 415

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              AKY+IR DG R+DLR+ +++    LE G+KVERHL DGDF++FNRQPSLHK S+MGHR
Sbjct: 416  --AKYVIRSDGTRIDLRHHRRAGQISLEYGWKVERHLIDGDFIIFNRQPSLHKESMMGHR 473

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL MVP  IVSPQ N P
Sbjct: 474  VRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNGP 533

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            +MGIVQDTL G  K+ +RD F+ K+  MNI++W  +++G +P+P ILKPRP WTGKQ+ +
Sbjct: 534  LMGIVQDTLAGAYKLCRRDVFLSKEQVMNIMLWVPEWNGVIPRPAILKPRPRWTGKQIMS 593

Query: 583  LIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            L+IPK INL       A  D G+L        I+ GEL+ G   KK++G S G +IH+ +
Sbjct: 594  LVIPKTINLRMGNDDTALKDDGLL--------IQTGELMYGLPTKKSVGASGGGIIHICF 645

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E+G D A  FL   Q +VNYWLL N  SIGIGDTI D  T+E + + I   K  V+ L 
Sbjct: 646  NELGSDGAMAFLNGCQRVVNYWLLHNGHSIGIGDTIPDKATIEKVQEQIDTQKEEVRRLT 705

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
              A    LE  PG  + E+FENKV++ LNTARD+AG++ Q+SL + NN   M  +GSKGS
Sbjct: 706  AMATANELEALPGMNIRETFENKVSKALNTARDKAGTTTQESLKDINNAVTMARSGSKGS 765

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
             INISQMTA VGQQ VEG+RIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFF
Sbjct: 766  SINISQMTALVGQQIVEGRRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFF 825

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  KYDGTVRNSLGDVIQF+YGEDG+D
Sbjct: 826  FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVSAKYDGTVRNSLGDVIQFVYGEDGLD 885

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQ 942
             V IE Q +D L M    F+K FR ++  E         EY +++    E++++ D+E +
Sbjct: 886  GVHIEEQRMDHLNMSIKSFEKKFRLDVMSEMRPAALDALEYANEIAGDAEVQELLDSEYE 945

Query: 943  KLEADR--------YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPME 994
             L  DR         +L++ +    +    LP+N+ R++  AQK FK+D  + SD+ P +
Sbjct: 946  TLLGDRERVRDINKRRLSSILGKKDEEMMQLPLNVVRIVNTAQKMFKLDDAQRSDLRPQD 1005

Query: 995  VVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWV 1054
            V+  + K+  ++  V G+D +SVEA  +AT+ F   LRS  A KR+  E RLTR AF+ +
Sbjct: 1006 VIPVIQKMLNQMVAVRGKDAISVEANDSATILFKAQLRSRLAFKRLAVEMRLTRLAFDHI 1065

Query: 1055 IGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII 1114
            +GE+ SR+ +++V PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+
Sbjct: 1066 VGELSSRWARAMVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIL 1125

Query: 1115 NVAKKIKTPSLSVFLKPGVNS--TKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1172
            NVA  IKTPS++V+L        T++RAK ++  +E+T LRSVT  TE++YDPD   T I
Sbjct: 1126 NVASNIKTPSMAVYLDDADERPPTQDRAKELRSIVEHTNLRSVTAVTEIYYDPDLRWTNI 1185

Query: 1173 EEDVEFVKSYYEMPDEDIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDD 1230
             ED   ++SY+ +P ED+A   ++ S W+LRI L+R+ ++DK L++  VA +I +E+  D
Sbjct: 1186 VEDENILESYFLIP-EDVATNLDQQSRWMLRITLDRQKLLDKGLTIEDVANRIKEEYPTD 1244

Query: 1231 LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---- 1286
            L  IF+D+NAD  ++R+R +  +  K E  D + EDDV LK++E+++L  + LRGV    
Sbjct: 1245 LGVIFSDNNADSQVIRVRTVRQDDEKDE--DGALEDDVMLKRLETHLLDTLTLRGVPGIE 1302

Query: 1287 -------------------------------------NLLAVMCHEDVDARRTTSNHLIE 1309
                                                  L AV+  + VD +RT +N L +
Sbjct: 1303 RAFLNKDTVLIKTKDDALLAAKDDPACTAWYLDTEGSALRAVLAVDGVDPKRTYTNDLHQ 1362

Query: 1310 IIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1369
            +++V GIEA R  LL EL  V+SFDGSYVN+RHLA+L D MTYRG + A+TRHGINR DT
Sbjct: 1363 VVDVFGIEAARSTLLRELTAVLSFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADT 1422

Query: 1370 GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI 1429
            G +MRCSFEETV+ILL+AA   E D  RG++EN+MLGQLAP+GTG   + L+ ++L+  I
Sbjct: 1423 GALMRCSFEETVEILLEAAAVGELDDCRGISENVMLGQLAPMGTGHFEVLLDPKLLETVI 1482

Query: 1430 ELQLPSYMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYL---------FSPNLRLSPV 1476
               + +   GL  G+T   S + G  TPY  G  +   GYL         FSP +     
Sbjct: 1483 ---MDNSRMGLMPGLTVKGSQLEGAATPYDTGSPLADSGYLSISSPAMGNFSPIMGAGSE 1539

Query: 1477 TDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSP-GYSPTSP------GYSPTSP--GYS 1527
            T A  +   GG  F    S GY+ +SP   P+SP   SPTSP       YSPTSP  GYS
Sbjct: 1540 TPAGLNTEYGGSGF---GSMGYA-TSP--RPTSPFTTSPTSPFNSGYGSYSPTSPSAGYS 1593

Query: 1528 PTSP--------------------------GYSPTSPT------------------YSPS 1543
            PTSP                             PTSP                   YSP+
Sbjct: 1594 PTSPIMDMGGRFSSSPQFSPSSPSFSPTSPMMRPTSPNYSPTSPSYSPASPSAARHYSPT 1653

Query: 1544 SPGY--SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSY---- 1596
            SP    SPTSP+YSP SP+YSP SP+   TSPSYSP SP++SPTSP +YSPTSP++    
Sbjct: 1654 SPAQFTSPTSPSYSPASPNYSPASPNLHATSPSYSPASPTWSPTSPEAYSPTSPTFQRSP 1713

Query: 1597 ----SPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
                SPTSPSYSPTSP +SP +P   P  PA
Sbjct: 1714 GQAASPTSPSYSPTSPTFSPRTPGRGPPGPA 1744



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 117/217 (53%), Gaps = 50/217 (23%)

Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP-SYSPTSPSYSPT 1641
            SP   ++SP   + S T    +         S  Y+ TSP   PTSP + SPTSP ++  
Sbjct: 1524 SPAMGNFSPIMGAGSETPAGLNTEYGGSGFGSMGYA-TSP--RPTSPFTTSPTSP-FNSG 1579

Query: 1642 SPSYSPTSPS--YSPTSP-------------------SYSPTSPAYSPTSPGY------- 1673
              SYSPTSPS  YSPTSP                   S+SPTSP   PTSP Y       
Sbjct: 1580 YGSYSPTSPSAGYSPTSPIMDMGGRFSSSPQFSPSSPSFSPTSPMMRPTSPNYSPTSPSY 1639

Query: 1674 -----------SPTSPSY--SPTSPTYSPTSPSYNPQSAK-YSPSLAYSPSSPRLSPASP 1719
                       SPTSP+   SPTSP+YSP SP+Y+P S   ++ S +YSP+SP  SP SP
Sbjct: 1640 SPASPSAARHYSPTSPAQFTSPTSPSYSPASPNYSPASPNLHATSPSYSPASPTWSPTSP 1699

Query: 1720 --YSPTSPNYSPT-SSSYSPTSPSYSPSSPTYSPSSP 1753
              YSPTSP +  +   + SPTSPSYSP+SPT+SP +P
Sbjct: 1700 EAYSPTSPTFQRSPGQAASPTSPSYSPTSPTFSPRTP 1736



 Score = 90.1 bits (222), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 101/233 (43%), Positives = 126/233 (54%), Gaps = 55/233 (23%)

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT 1655
            SP   ++SP   A S T    +         S  Y+ TSP   PTSP + SPTSP ++  
Sbjct: 1524 SPAMGNFSPIMGAGSETPAGLNTEYGGSGFGSMGYA-TSPR--PTSPFTTSPTSP-FNSG 1579

Query: 1656 SPSYSPTSPAYSPTSPGYSPTSP-------------------SYSPTSPTYSPTSPSYNP 1696
              SYSPTSP     S GYSPTSP                   S+SPTSP   PTSP+Y+P
Sbjct: 1580 YGSYSPTSP-----SAGYSPTSPIMDMGGRFSSSPQFSPSSPSFSPTSPMMRPTSPNYSP 1634

Query: 1697 QSAKYSPSLA-----YSPSSPRLSPASPYSPTSPNYSPTSSSYSP-------TSPSYSPS 1744
             S  YSP+       YSP+SP    A   SPTSP+YSP S +YSP       TSPSYSP+
Sbjct: 1635 TSPSYSPASPSAARHYSPTSP----AQFTSPTSPSYSPASPNYSPASPNLHATSPSYSPA 1690

Query: 1745 SPTYSPSSPYNAGGGNPDYSPSSP--QYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
            SPT+SP+SP         YSP+SP  Q SP    SP++P YSP+S + ++P+T
Sbjct: 1691 SPTWSPTSP-------EAYSPTSPTFQRSPGQAASPTSPSYSPTSPT-FSPRT 1735


>gi|322694724|gb|EFY86546.1| DNA-directed RNA polymerase II largest subunit [Metarhizium acridum
            CQMa 102]
          Length = 1746

 Score = 1615 bits (4182), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 865/1764 (49%), Positives = 1145/1764 (64%), Gaps = 191/1764 (10%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG++SP+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLMSPEEIKNMSVCHILYPETMDESRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
             KC+TCT +M++CPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F  
Sbjct: 67   FKCKTCTQSMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDSEFVT 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            A+  R+ K R  ++   CK K +CE  D  +    +   G +P+  N GGCG  QP++  
Sbjct: 127  AINTRDAKLRFNRVWAVCKKKRRCENEDRNEKNDDEFAPGMKPVAHNHGGCGNVQPQVRQ 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNPKY 238
              +++ A +         QE  P+   R++T  +T E   G+L+RIS+ED + +GLN  Y
Sbjct: 187  AALQLKAAFDVA------QEDGPK---RRETVPITPEMAHGILRRISEEDLRHMGLNSDY 237

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+WMIL V             +      +R  DDLT++L  IIR N N+++  R G+P
Sbjct: 238  ARPEWMILTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  QHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG   A
Sbjct: 358  DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGH++++
Sbjct: 415  KYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHQVRV 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL +VP  IVSPQ N P+MG
Sbjct: 475  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSPQKNGPLMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQD+L G  K+ +RDTFI+K++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ +++I
Sbjct: 535  IVQDSLAGVYKLCRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVI 594

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            P++I+L      HA      +   DT + I+ GELL G L KK +G + G +IH+ + E+
Sbjct: 595  PQEISL------HAPEGDSDIPPKDTGLLIQSGELLYGLLKKKNVGAAAGGIIHLCYNEL 648

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP+ A  FL   Q +V YWLL    SIGIGDTI D +T+E I   I   K  V  L  QA
Sbjct: 649  GPEGAMAFLNGVQQVVTYWLLNTGHSIGIGDTIPDKQTIEKIQVHIDTQKAEVAKLTAQA 708

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  +  +FENKV+  LN+ARD+AG++ QKSL +SNN   M  +GSKGS IN
Sbjct: 709  TANELEALPGMNVRATFENKVSMALNSARDQAGTTTQKSLKDSNNAVTMSESGSKGSSIN 768

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHA
Sbjct: 769  ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHA 828

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD++QFLYGEDG+D++ 
Sbjct: 829  MAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIVQFLYGEDGLDAMC 888

Query: 886  IESQTLDSLKMKKSEFDKAFRFEM-DEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE Q L  LKM  + F+K +R ++ +  +W   +Y   EY ++L   KE  D+ D+E + 
Sbjct: 889  IEKQKLGILKMSDAAFEKKYRLDLANPPDWFKKDY---EYGNELAGDKESMDLLDSEWET 945

Query: 944  LEADRYQLATEIATS--GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
            L +DR Q    I  S  G+    LP+N+ R+I  A++ F V     S++ P +V+  +  
Sbjct: 946  LLSDR-QTVRLINKSKMGEEMMQLPLNIGRMIETAKRVFNVRATDRSNLRPADVIPRIQN 1004

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L   LK+V G DP+S EA  NAT+ F  L+RS  A K ++K HRL + AF+ V+GE+++R
Sbjct: 1005 LLSELKIVRGSDPISAEADMNATILFKALVRSRLAFKEIVKVHRLNKLAFDHVLGELQNR 1064

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            + +S V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK IK
Sbjct: 1065 WDRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIK 1124

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPS++V+L   +  T+E+AK ++  +EYT LRS+T  TE++YDPD  GT I ED++ V+S
Sbjct: 1125 TPSMAVYLNTKL-GTQEQAKKLRSMVEYTNLRSITSVTEIYYDPDIQGTTIAEDMDMVES 1183

Query: 1182 YYEMPDE-DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
            Y+ +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+ +DL  IF+D+NA
Sbjct: 1184 YFLIPDDGQDNTDQQSRWLLRITLDRQKLLDKEIRIDDVAQRIKEEYPNDLAVIFSDNNA 1243

Query: 1241 DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-------------- 1286
            D+ ++RIR +     K E  ++  EDDV LK++E+++L  + LRGV              
Sbjct: 1244 DEQVIRIRTVRQSEEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGIERAFLTKGTRL 1303

Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                        L  V+  + VDA RT +N L +I+EV GIEA 
Sbjct: 1304 TVGEDGSELAIKDDPRCTQWYLDTSGSALRDVLAVDGVDASRTYTNDLWQIVEVFGIEAA 1363

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSFEE
Sbjct: 1364 RSALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSFEE 1423

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEG 1439
            TV+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  + L+ +ML+  I     +   G
Sbjct: 1424 TVEILLEAAATGELDDCRGISENVMLGQLAPMGTGNFDVLLDPKMLETVIS---DNSRMG 1480

Query: 1440 LEFGMTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS--- 1494
            L  GM        G  TPY  G  SP    S  + ++      FSP  G  + +P     
Sbjct: 1481 LMPGMPVKDGEAEGAATPYDTG--SPMSNDSGYMSMNSPAAGNFSPIQGAGSETPAGFGT 1538

Query: 1495 -------------SP----------------------GYSPSSP--GYSPSSPGYSPTSP 1517
                         SP                      GYSPSSP  GYSP+SP     + 
Sbjct: 1539 EYGGGGFGNVGSMSPYSRGATSPFSTSPTSPFSSGMVGYSPSSPNAGYSPTSPLLDGGAG 1598

Query: 1518 GY-----------------------SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1554
             Y                       SP SP YSPTSP YSPTSPT SP    YSPTSPA 
Sbjct: 1599 RYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPT-SPRH--YSPTSPAQ 1655

Query: 1555 --SPTSPSYSPTSPSYSPTSPSYSPTS-------------------PSYSPTSPSY---- 1589
              SPTSPSYSP SP+YSP SP+    +                    +YSPTSPS+    
Sbjct: 1656 FNSPTSPSYSPASPNYSPASPNLHGAAGATSPSYSPASPSWSPTSPEAYSPTSPSFQRSP 1715

Query: 1590 ----SPTSPSYSPTSPSYSPTSPA 1609
                SPTSPSYSPTSP++SP +P 
Sbjct: 1716 GNQQSPTSPSYSPTSPAFSPRTPG 1739



 Score =  100 bits (249), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 73/162 (45%), Positives = 82/162 (50%), Gaps = 65/162 (40%)

Query: 1596 YSPTSPS--YSPTSPAYSPTSPAY-----------------------SPTSPAYSPTSPS 1630
            YSP+SP+  YSPTSP     +  Y                       SP SP YSPTSPS
Sbjct: 1577 YSPSSPNAGYSPTSPLLDGGAGRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPS 1636

Query: 1631 YSPTSPS----YSPTSPSY--SPTSPSYSPTSPSYSPTSP-------------------- 1664
            YSPTSP+    YSPTSP+   SPTSPSYSP SP+YSP SP                    
Sbjct: 1637 YSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAAGATSPSYSPASPSW 1696

Query: 1665 ------AYSPTSPGY--------SPTSPSYSPTSPTYSPTSP 1692
                  AYSPTSP +        SPTSPSYSPTSP +SP +P
Sbjct: 1697 SPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPAFSPRTP 1738



 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 87/164 (53%), Gaps = 27/164 (16%)

Query: 1609 AYSPTSP--AYSPTSPAYSPTSPSYSPTSPSYSPTSPS------YSPTSPSYSPTSPSYS 1660
             YSP+SP   YSPTSP     +  Y+ +      +           PTSP+    SP+YS
Sbjct: 1576 GYSPSSPNAGYSPTSPLLDGGAGRYATSPSFSPSSPSFSPTSPMLRPTSPA----SPNYS 1631

Query: 1661 PTSPAYSPTSPGYSPTSP-SYSPTSPTY--SPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
            PTSP+YSPT    SPTSP  YSPTSP    SPTSPSY+P S  YSP+      +   +  
Sbjct: 1632 PTSPSYSPT----SPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAAGATSP 1687

Query: 1718 SPYSPTSPNYSPTSSSYSPTSPSY--------SPSSPTYSPSSP 1753
            S    +      +  +YSPTSPS+        SP+SP+YSP+SP
Sbjct: 1688 SYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSP 1731



 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 92/222 (41%), Gaps = 113/222 (50%)

Query: 1590 SPTSPSYSPTSPSYSPT-------------------SP---------------------- 1608
            SP + ++SP   + S T                   SP                      
Sbjct: 1516 SPAAGNFSPIQGAGSETPAGFGTEYGGGGFGNVGSMSPYSRGATSPFSTSPTSPFSSGMV 1575

Query: 1609 AYSPTSP--AYSPTSPAY------------------------------SPTSPSYSPTSP 1636
             YSP+SP   YSPTSP                                SP SP+YSPTSP
Sbjct: 1576 GYSPSSPNAGYSPTSPLLDGGAGRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSP 1635

Query: 1637 SYSPTSPS----YSPTSPSY--SPTSPSYSPTSPAYSPTSP------------------- 1671
            SYSPTSP+    YSPTSP+   SPTSPSYSP SP YSP SP                   
Sbjct: 1636 SYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAAGATSPSYSPASPS 1695

Query: 1672 -------GYSPTSPSY--------SPTSPTYSPTSPSYNPQS 1698
                    YSPTSPS+        SPTSP+YSPTSP+++P++
Sbjct: 1696 WSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPAFSPRT 1737


>gi|353231921|emb|CCD79276.1| putative dna-directed RNA polymerase II largest subunit [Schistosoma
            mansoni]
          Length = 1900

 Score = 1614 bits (4179), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 904/1893 (47%), Positives = 1206/1893 (63%), Gaps = 160/1893 (8%)

Query: 14   KVRMVQFGILSPDEIRQMSVV---QIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCT 70
            +VR +QFGILSPDEI+++SV     I++ ET E GKPK GGL DPR G +DR   C+TC+
Sbjct: 13   EVRALQFGILSPDEIKELSVTPDGGIKYAETMEGGKPKLGGLMDPRQGCVDRSSICQTCS 72

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP 130
             +++ CPGHFGH+ELAKP+FHIGF+K  + ++R VCF CSKIL D    + ++ L+    
Sbjct: 73   GSVSSCPGHFGHVELAKPVFHIGFLKKTMKVLRCVCFYCSKILVDVQSSRIQEILRKTKG 132

Query: 131  KNR--LKKILDACKNKTKCEGGD-----EIDVPGQDG-----EEPL-----KKNKGGCGA 173
             NR  +  + + CK +++C   D     E DV           +PL        + GCG 
Sbjct: 133  DNRRRMSFMYEECKTRSECISNDDQVQSENDVSLSSKVSFGVHKPLFFFVTTVKRSGCGR 192

Query: 174  QQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
             QP+    G+++ AE+K   K N++ +      ERK  LTAERVL V KR+SDEDC  LG
Sbjct: 193  YQPRFRRNGLELTAEWK---KVNEESQ------ERKINLTAERVLEVFKRMSDEDCLSLG 243

Query: 234  LNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNG 283
             +P+YARPDWMI  VLP+PP  VRP+          DDLTH+LA II+ N  LRR E+NG
Sbjct: 244  FDPRYARPDWMIATVLPVPPLCVRPAVVMYGATRNQDDLTHKLADIIKANNQLRRDEQNG 303

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGK 343
            A AHII+E  ++LQFH+ T  DNE+PG P+A Q+SGRP+KSI  RLK K GRIRGNLMGK
Sbjct: 304  AAAHIIAEDIKMLQFHVTTMVDNEVPGLPKAIQKSGRPLKSIKQRLKGKAGRIRGNLMGK 363

Query: 344  RVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKT 403
            RVDFSARTVIT DP +N+DQ+GVP +IA NLTYPE VT +NI+ L++LV+ G   P    
Sbjct: 364  RVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPEIVTQFNIDHLQKLVQNGTLYP---- 419

Query: 404  GAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
            GAK+I+R++G R+DLRY  K SD  L++GY VERH+ + DFV+FNRQP+LHKMS+M HR+
Sbjct: 420  GAKFIVRENGDRIDLRYHPKVSDLTLQVGYIVERHMLNDDFVIFNRQPTLHKMSMMCHRV 479

Query: 464  KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
            K++P+STFRLNLSVTSPYNADFDGDEMN+H+PQS ET+AE+ +L  V + +++PQ+N+PV
Sbjct: 480  KVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQLARVSRLVITPQANKPV 539

Query: 524  MGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNL 583
            MGIVQDTL    K+T+RD F+ +   MN+LM+   ++G++P+P I KP+ LWTGKQ+F+L
Sbjct: 540  MGIVQDTLTAVNKMTQRDVFLNRSEMMNLLMYLPTWNGRMPKPAIYKPQRLWTGKQLFSL 599

Query: 584  IIPKQINLFRTAAWH-ADNDKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIH 639
            +IP ++N  RT + H  + D G    ++ GDT V ++ G+L+SG LCKKTLG+  GSLIH
Sbjct: 600  VIPGRVNCIRTHSTHPEEEDIGPYKWISPGDTKVIVDDGDLISGILCKKTLGSGAGSLIH 659

Query: 640  VIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVK 699
            ++  E   D    F  + Q +VN WLL    +IGI DT+ D  T   I+ TI+KAK+ V 
Sbjct: 660  IVALEHHHDQVNMFFNNIQTVVNNWLLIEGHTIGIADTLYDQATRRQISGTITKAKDAVF 719

Query: 700  NLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGS 759
             +I QA +  L+P PG T+ ++FEN VN++LN ARD+ GS AQ+SLS+ NN   MV AGS
Sbjct: 720  EIIDQAHNYDLQPTPGNTLRQTFENSVNKILNDARDKTGSCAQRSLSKYNNFNIMVVAGS 779

Query: 760  KGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQ 819
            KGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF +DDYGPESRGFVENSYL GLTP 
Sbjct: 780  KGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTPT 839

Query: 820  EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGED 879
            EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +M+KYDGTVRN +  +IQ  YGED
Sbjct: 840  EFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIKYDGTVRNQINQLIQLRYGED 899

Query: 880  GMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDA 939
            G+D+  +E Q L + K   + F+  FRF++  E      M ++ +  L T  + +   ++
Sbjct: 900  GLDATHVEFQRLPTFKPSNAVFEHGFRFDIGNERVLRRCMPEDVVRSLATDSQTQSELES 959

Query: 940  EVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
            E  +L +DR  L + I  + D S  LP N+ RL+ NAQK F++DP   +++HP +VVE V
Sbjct: 960  EWLQLCSDREILRSVIKKT-DDSVVLPCNINRLVMNAQKIFEIDPLSKTNIHPRQVVEMV 1018

Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
             +  +RL VVPG+D LS EA  NATL  + L+R++  +K+V+ ++RL+ EA +WV+GE+ 
Sbjct: 1019 RETCKRLIVVPGDDRLSKEANANATLLLSSLIRASLCAKKVIIDYRLSYEALDWVLGEVR 1078

Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
            +RF Q+ + PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+
Sbjct: 1079 ARFQQAHIHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKR 1138

Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
             KTPS+++FL        ER K+V   LE+TTLR +  +T ++YDPDP  T++EED E+V
Sbjct: 1139 PKTPSMTIFLTGQAARDAERTKDVVARLEHTTLRKLVNSTYIYYDPDPQNTVVEEDREWV 1198

Query: 1180 KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
             +YYE+PD D+    IS W+LRIE  R+ M  KKLSM  +A+KI + F +DL C   DDN
Sbjct: 1199 STYYELPDFDV--NAISSWMLRIEFTRKGMTGKKLSMEQIADKITRAFGNDLICHIPDDN 1256

Query: 1240 ADKLILRIRIMNDEAPK----GELNDESAEDDVFLKKIESNMLTEMALRGV--------- 1286
              KL++RIRIMN +  K     +   +  EDD FL+ IE+N+LT++ L+G+         
Sbjct: 1257 L-KLVMRIRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLLTDITLQGIPQITKVYMH 1315

Query: 1287 -------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLG 1315
                                            L+ V+   DVD  RT SN ++EI E LG
Sbjct: 1316 LPKTQDKKRVVIKDDGSFDTVAEWMLETDGTCLMRVLAERDVDPVRTVSNDIVEIFEALG 1375

Query: 1316 IEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRC 1375
            IEAVR+A+  E+  VISFDGSYVNYRHLA+LCD MT +GHLMAITRHG+NR DTG + RC
Sbjct: 1376 IEAVRKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMAITRHGLNRLDTGALARC 1435

Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS 1435
            SFEETVDIL++AA+ +E D + GV+E IMLGQLA IGTG   L L+    + A  + L  
Sbjct: 1436 SFEETVDILMEAAIHSECDPMAGVSETIMLGQLARIGTGCFDLLLDSAKCQEAQPIPLGG 1495

Query: 1436 YMEGLEFGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLR--LSPVT---DAQFSPYV 1485
             + G+     P   PV G     TP+ +     G + SP+ R  L   T   +A FSP  
Sbjct: 1496 VL-GMGLFNAPDGIPVLGDSGYHTPWDNAHSPVGSVDSPSYRGGLGGATAPHNAMFSP-- 1552

Query: 1486 GGMAFSPTSSPGYSPSSPGYSPSSP-GYSPTS-PGYS-PTSPGYSPTSPGYSPT------ 1536
              M +  + SPG SP     SP +P  +SP +  G+S P S   +P +   SP       
Sbjct: 1553 -AMRYDSSLSPGRSPQLD--SPRTPEAFSPAAYVGFSSPMSFMGTPQTELGSPGSSPGHS 1609

Query: 1537 ---------------------SPTYSPS---SPGYSPTSPAYSPTSPSYSPTSPSYSPTS 1572
                                 SP + PS   +   S  S +    SP++S    SY P S
Sbjct: 1610 GSLSSGSFGYGGPGSLRADIFSPIHKPSYAGTGSSSSFSASGDSNSPTFS-LQQSYEPMS 1668

Query: 1573 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYS 1632
              Y+  SP +   S     +S S  P+S S    + +YSP SP   PT    S  S  +S
Sbjct: 1669 VGYTQRSPHHPSFSGYGMISSGSLGPSSDSPDSINYSYSPNSPM--PTGGG-SSMSRDFS 1725

Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
                     +P  SP+SPS   ++ S S + P++ P S   SP S + SP++P YSP + 
Sbjct: 1726 GWGVLPGSETPGVSPSSPSPGMSASSLSGSRPSFYPNSQPASPLSFNASPSAPRYSPPTL 1785

Query: 1693 SYNPQSAKYSPSLAYSPSSPRLSPA--------SPYS-PTSPNYSPTSSSYSPTSPSYSP 1743
            + +     YSP +  +PSSP  +P+        SP S PT+PNY P S   S  +   S 
Sbjct: 1786 AGSSSVESYSPQMT-TPSSPGGAPSGTLGGPSNSPLSYPTTPNY-PMSHGLSTGTGLGSS 1843

Query: 1744 SSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGY 1776
            S   YS +    +  G   YSPS+  ++PS+ Y
Sbjct: 1844 SLLGYSGTGFSGSTLGTSAYSPST-FHTPSSHY 1875


>gi|413915236|gb|AFW21480.1| RNA polymerase II largest subunit [Periglandula ipomoeae]
          Length = 1760

 Score = 1612 bits (4173), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 866/1775 (48%), Positives = 1151/1775 (64%), Gaps = 173/1775 (9%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRK 63
            P+S A +  V  +QFG+++P+EI+ MSV  I + ET +  R KP+ GGL+DP LG+IDR 
Sbjct: 7    PFSSAPLKTVEEIQFGLMAPEEIKNMSVCHILYPETMDESRTKPRDGGLNDPLLGSIDRG 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
             KC+TCT  M++CPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F  
Sbjct: 67   FKCKTCTQAMSDCPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADTSDPEFVA 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTI 180
            A+  R+ K R  ++   CK K +CE  D  +   ++   G +P+  N GGCG  QP++  
Sbjct: 127  AISTRDAKLRFNRVWAVCKKKQRCENEDRTEKNDEEFAPGMKPMLNNHGGCGNVQPQVRQ 186

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNPKY 238
              +++ A +         QE  P+   R++T  +T E   G+L+RIS+ED + +GLN  Y
Sbjct: 187  AALQLKAAFDVV------QEDGPK---RRETVPITPEMAHGILRRISEEDLRHMGLNSDY 237

Query: 239  ARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+WMI+ V             +      +R  DDLT++L  IIR N N+++  R G+P
Sbjct: 238  ARPEWMIITVLPVPPPLVRPSISMDGTSTGMRNEDDLTYKLGDIIRANGNVKQAIREGSP 297

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKRV
Sbjct: 298  QHIARDFEELLQYHVATYMDNDIVGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV 357

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG   A
Sbjct: 358  DFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG---A 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KY++R DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR+++
Sbjct: 415  KYVLRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHRVRV 474

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL +VP  IVS Q N P+MG
Sbjct: 475  MPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCLVPNNIVSTQKNGPLMG 534

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQD+L G  KI +RDTFI+K++ MN+++W  ++DG +PQP ILKPRP WTGKQ+ +++I
Sbjct: 535  IVQDSLAGAYKICRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILKPRPRWTGKQLISMVI 594

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            PK+I+L    +     D   +   DT + I+ GELL G L KK +G++ G ++H+ + E+
Sbjct: 595  PKEISLHSPES-SGGQDNADIPLKDTGLLIQSGELLYGLLKKKNIGSAAGGIVHLSYNEL 653

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP+ A  FL   Q +V YWLL N  SIGIGDT+ D +T+E +   I   K  V  L  QA
Sbjct: 654  GPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTVPDKQTIEKVQVHIDTQKAEVARLTAQA 713

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
                LE  PG  +  +FENKV+  LN+ARD+AG++ Q+SL +SNN   M  +GSKGS IN
Sbjct: 714  TANELEALPGMNVRATFENKVSMALNSARDQAGTTTQRSLKDSNNAVTMAESGSKGSSIN 773

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHA
Sbjct: 774  ISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHA 833

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D++ 
Sbjct: 834  MAGREGLIDTAVKTAETGYIQRRLVKALEDLSERYDGTVRNSLGDIIQFLYGEDGLDAMC 893

Query: 886  IESQTLDSLKMKKSEFDKAFRFEM-DEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            IE Q L  LKM  + F+K +R ++ +  +W   +Y   EY ++L   KE  D+ D+E   
Sbjct: 894  IEKQKLGILKMSDAAFEKKYRLDLANPPDWFKKDY---EYGNELAGDKESMDLLDSEWDA 950

Query: 944  LEADRYQL-ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            L  DR  +     A  G+    LP+N+ R+I  A++ F V     S++ P +V+  V  L
Sbjct: 951  LLDDRRIVRLINRAKMGEEMMQLPLNIGRMIETAKRVFNVRATDRSNLRPADVIPRVQNL 1010

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
               LK+V G D +SVEA  NAT+ F  L+RS  A K ++K HRL + AF+ V+GE+++R+
Sbjct: 1011 LSELKIVRGSDSISVEADTNATILFKALIRSRLAFKEIVKVHRLNKLAFDHVLGELQNRW 1070

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             +S V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK IKT
Sbjct: 1071 DRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKDIKT 1130

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PS++V+    +  T+E+AK ++  +EYT LRS+T  TE++YDPD  GT I ED++ V+SY
Sbjct: 1131 PSMAVYFNTHL-GTQEQAKKLRSLVEYTNLRSITSVTEIYYDPDIQGTSIAEDMDMVESY 1189

Query: 1183 YEMP-DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            + +P D     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+  DL  IF+D+NAD
Sbjct: 1190 FLIPDDTQDTTDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPSDLAVIFSDNNAD 1249

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------------- 1286
            + ++RIR +  +  K E  ++  EDDV LK++E+++L  + LRGV               
Sbjct: 1250 EQVIRIRTIRTDDDKDEDGEKRIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGTRLV 1309

Query: 1287 --------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                       L  V+  + VD  RT +N L +I+EV GIEA R
Sbjct: 1310 IDDDGAEIAKKDDDKCTQWYLDTSGSALREVLAVDGVDPTRTYTNDLWQIVEVFGIEAAR 1369

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             AL+ EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRCSFEET
Sbjct: 1370 SALVKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRCSFEET 1429

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+ILL+AA   E D  RG++EN+MLGQLAP+GTG+  ++L+ +ML+  I     +   GL
Sbjct: 1430 VEILLEAAATGELDDCRGISENVMLGQLAPMGTGNFDVFLDPKMLETVIS---DNSRMGL 1486

Query: 1441 EFGMTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSP------ 1492
              GM        G  TPY  G  SP    S  + ++      FSP  G  + +P      
Sbjct: 1487 MPGMPVKEGEAEGAATPYDTG--SPMSNDSGYMSMNSPAAGNFSPIQGAGSETPAGFGTE 1544

Query: 1493 --------------------TSSPGYSPSSPGYSPSSPGYSPTSP--GYSPTSPGYSPTS 1530
                                TS    SP+SP +S    GYSPTSP  GYSPTSP     +
Sbjct: 1545 YGGGGFGSIGSMSPYSMRGATSPFSTSPTSP-FSAGMGGYSPTSPNAGYSPTSPLLDGGA 1603

Query: 1531 PGY-----------------------SPTSPTYSPSSPGYSPTSPA----YSPTSPSY-- 1561
              Y                       SP SP YSP+SP YSPTSP     YSPTSP+   
Sbjct: 1604 GRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFN 1663

Query: 1562 SPTSPSYSPTSPSYSPTSP-------------------------SYSPTSPSYSPT-SPS 1595
            SPTSPSYSP SP+YSP SP                         +YSPTSPS+  +    
Sbjct: 1664 SPTSPSYSPASPNYSPASPNLHGAGATSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQ 1723

Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
             SPTSPSYSPTSPA+SP +P    +   YSP SPS
Sbjct: 1724 QSPTSPSYSPTSPAFSPRTPGPGNSGNQYSPNSPS 1758



 Score = 95.9 bits (237), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/195 (42%), Positives = 94/195 (48%), Gaps = 69/195 (35%)

Query: 1641 TSP-SYSPTSPSYSPTSPSYSPTSP--AYSPTSPGY------------------------ 1673
            TSP S SPTSP +S     YSPTSP   YSPTSP                          
Sbjct: 1565 TSPFSTSPTSP-FSAGMGGYSPTSPNAGYSPTSPLLDGGAGRYATSPSFSPSSPSFSPTS 1623

Query: 1674 ------SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPN 1726
                  SP SP+YSPTSP+YSPTSP+     +  SP+   SP+SP  SPASP YSP SPN
Sbjct: 1624 PMLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPN 1683

Query: 1727 -------------------------YSPTSSSY--------SPTSPSYSPSSPTYSPSSP 1753
                                     YSPTS S+        SPTSPSYSP+SP +SP +P
Sbjct: 1684 LHGAGATSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPAFSPRTP 1743

Query: 1754 YNAGGGNPDYSPSSP 1768
                 GN  YSP+SP
Sbjct: 1744 GPGNSGN-QYSPNSP 1757



 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 79/185 (42%), Positives = 100/185 (54%), Gaps = 51/185 (27%)

Query: 1655 TSP-SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY------ 1707
            TSP S SPTSP +S    GYSPTSP+       YSPTSP  +  + +Y+ S ++      
Sbjct: 1565 TSPFSTSPTSP-FSAGMGGYSPTSPNAG-----YSPTSPLLDGGAGRYATSPSFSPSSPS 1618

Query: 1708 -----------SPSSPRLSPASP-YSPTSP----NYSPTSSSY--SPTSPSYSPSSPTYS 1749
                       SP+SP  SP SP YSPTSP    +YSPTS +   SPTSPSYSP+SP YS
Sbjct: 1619 FSPTSPMLRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPNYS 1678

Query: 1750 PSSPYNAGGG-----------------NPDYSPSSP--QYSPSAGYSPSAPGYSPSSTSQ 1790
            P+SP   G G                    YSP+SP  Q SP    SP++P YSP+S + 
Sbjct: 1679 PASPNLHGAGATSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGNQQSPTSPSYSPTSPA- 1737

Query: 1791 YTPQT 1795
            ++P+T
Sbjct: 1738 FSPRT 1742


>gi|50310581|ref|XP_455310.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644446|emb|CAG98018.1| KLLA0F05071p [Kluyveromyces lactis]
          Length = 1720

 Score = 1610 bits (4169), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 834/1570 (53%), Positives = 1094/1570 (69%), Gaps = 80/1570 (5%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDR 62
            FPYS A +  ++ VQFG+ SP+E+R +SV +IE  ET +    K K GGL+DPRLG+IDR
Sbjct: 4    FPYSSAPLRTIKEVQFGLFSPEEVRGISVAKIEFPETMDESQMKAKIGGLNDPRLGSIDR 63

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
              KC+TC   MAECPGHFGH+ELAKP+FHIGF+  +  +  SVC +C K+L DE + + +
Sbjct: 64   NYKCQTCGEGMAECPGHFGHIELAKPVFHIGFLSKIKKVCESVCMHCGKLLLDEYNEQMR 123

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEG 182
            QA+KI++PK R   +   CK K  CE     +VP  D +  +  ++GGCG  QP +  +G
Sbjct: 124  QAIKIKDPKRRFNAVWTLCKAKMVCE----TEVPSPD-DPTVFLSRGGCGHIQPSIRKDG 178

Query: 183  MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
            + ++  +K  + KN D    PE    K+ ++AE +L V K IS ED   LG N  ++RP+
Sbjct: 179  LSLVGTWK--KDKNADDSDQPE----KRIISAEEILNVFKHISPEDGWRLGFNEDFSRPE 232

Query: 243  WMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
            WMIL VLP+PPPPV          R  DDLT++L  I++ N N+++ E NG+P H+I E 
Sbjct: 233  WMILTVLPVPPPPVRPSISFNESQRGEDDLTYKLGDILKANINVQKLEINGSPQHVIQES 292

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
              LLQFH+ATY DN++ GQP+A Q+SGRPIKSI +RLK KEGRIRGNLMGKRVDFSARTV
Sbjct: 293  ESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTV 352

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
            I+ DP +++DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IR+ 
Sbjct: 353  ISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRES 409

Query: 413  GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
            G R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTFR
Sbjct: 410  GDRIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFR 469

Query: 473  LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
            LNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL 
Sbjct: 470  LNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLC 529

Query: 533  GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
            G RK+T RDTFIE D  +N+L W  D+DG +P P ILKP PLW+GKQV ++ IP  I+L 
Sbjct: 530  GIRKMTLRDTFIELDQVLNMLYWIPDWDGIIPTPAILKPVPLWSGKQVLSMAIPNGIHLQ 589

Query: 593  RTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARK 652
            R      D+    L+  D  + I  G+++ G + KKT+G+S+G LIHV+  E GP+   +
Sbjct: 590  RF-----DDGTTFLSPKDNGMLIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPEICAR 644

Query: 653  FLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEP 712
               + Q +VNYWLL N FSIGIGDTIAD KTM  I + I+ AK  V+++ K+AQ   L  
Sbjct: 645  LFSNIQKVVNYWLLHNGFSIGIGDTIADEKTMREITEAIAVAKKKVEDVTKEAQANLLTA 704

Query: 713  EPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 772
            + G T+ ESFE+ V + LN ARD+AG SA+ +L + NN+K MV+AGSKGSFINI+QM+AC
Sbjct: 705  KHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSAC 764

Query: 773  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 832
            VGQQ+VEGKRI FGF DRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGL
Sbjct: 765  VGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGL 824

Query: 833  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLD 892
            IDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLG+VIQF+YGEDGMD+  IE Q++D
Sbjct: 825  IDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQSID 884

Query: 893  SLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLA 952
            ++    S F++ +R ++  E +  +  L E   ++    +L+ + + E ++L  DR Q+ 
Sbjct: 885  TIPGSDSAFERRYRIDLLNEEYALDPSLLESGSEIIGDSKLQLLLNDEYKQLVDDR-QIL 943

Query: 953  TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGE 1012
              +   G+ +WPLPVN+KR+I N+Q+TF++D  +P+D+   +V+  V KLQE+L VV G+
Sbjct: 944  RRVFVDGEHNWPLPVNIKRIIQNSQQTFRIDQTKPTDLTIEDVISGVRKLQEKLLVVRGK 1003

Query: 1013 DPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEM 1072
              +  EAQ+NA   F  LLRS  A++RV++E+RL R+ F+WV+  IE++FL+S+V PGEM
Sbjct: 1004 SDILKEAQQNAITLFCCLLRSRLATRRVIEEYRLNRQTFDWVLNNIEAQFLRSIVHPGEM 1063

Query: 1073 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPG 1132
            +G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L P 
Sbjct: 1064 VGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLDPE 1123

Query: 1133 VNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI-- 1190
              + +E+AK ++ A+E+TTL+SVT A+E++YDPDP  T+IE+D E ++ ++ + DE+   
Sbjct: 1124 YAADQEKAKEIRSAIEHTTLKSVTVASEIYYDPDPRSTVIEDDEEIIQLHFSLMDEETEK 1183

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            + +  SPWLLR+EL+R  M DK L+M  V EKI + F +DL  I+++DNA+KLI+R R++
Sbjct: 1184 SLDYQSPWLLRLELDRAAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKLIIRCRVI 1243

Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------------------- 1284
             D  PK    D  AE+D  LKKIE++ML ++ LR                          
Sbjct: 1244 RD--PKTLDADVEAEEDHMLKKIENSMLEKITLRGVEDITRVVMMKYDRKVPSETGEYHK 1301

Query: 1285 ---------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
                     GVNL  VM    VD  R  +N  I+I+ VLGIEA R AL  E+  VI+ DG
Sbjct: 1302 VPEWVLETDGVNLSEVMTVSGVDGSRIYTNSFIDIMNVLGIEAGRAALYREVYNVIASDG 1361

Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
            SYVNYRH+A+L D MT +G LM++TRHG NR DTG +MRCSFEETV+IL +A   AE D 
Sbjct: 1362 SYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFEAGAAAELDD 1421

Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTP 1455
             RGV+EN++LGQ+APIGTG   + ++DE L   +        EG E G TP  S  SG  
Sbjct: 1422 CRGVSENVILGQMAPIGTGAFDVMIDDESLVKYMPEHKEVKTEGQEGGATPY-SNESGLA 1480

Query: 1456 YHDGMMSPGYLFSPNLRLSPVTDA---QFSPYVG---GMAFSPTSSPGYSPSSPGYSP-S 1508
              +  +    +FSP L  S   DA    F+ Y G   G A SP S  G  P+SPG+   S
Sbjct: 1481 NAEINVKDELMFSP-LVESGGADALAGGFTAYGGADYGSATSPFSGYGNGPTSPGFGEVS 1539

Query: 1509 SPGYSPTSPG 1518
            SPG+SPTSPG
Sbjct: 1540 SPGFSPTSPG 1549


>gi|358337430|dbj|GAA28785.2| DNA-directed RNA polymerase II subunit RPB1 [Clonorchis sinensis]
          Length = 1877

 Score = 1608 bits (4165), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 892/1899 (46%), Positives = 1190/1899 (62%), Gaps = 178/1899 (9%)

Query: 36   IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFM 95
            I++ ET E GKPK GGL DPR G +DR   C+TC+ N++ CPGHFGH+ELAKP+FHIGFM
Sbjct: 9    IKYAETMEGGKPKIGGLMDPRQGCVDRGSICQTCSGNVSNCPGHFGHVELAKPVFHIGFM 68

Query: 96   KTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKIL--DACKNKTKCEGGDEI 153
            K  L ++R VCF+CSKIL D    + ++ L+     NR + +   + CK++T+C   +E 
Sbjct: 69   KKTLKLLRCVCFHCSKILVDVQSPQIQEILRKTKNDNRRRMMFMYEECKSRTECLS-NED 127

Query: 154  DVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLT 213
             + G++     K  + GCG  QP+    G+++ AE+K   K N++ +      ERK TLT
Sbjct: 128  QIGGENDTLENKTKRAGCGRYQPRFRRIGLELTAEWK---KINEESQ------ERKITLT 178

Query: 214  AERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLT 263
            AERVL V KRISDEDC  LG +P+YARPDWMI+ VLP+PP  VRP+          DDLT
Sbjct: 179  AERVLEVFKRISDEDCLSLGFDPRYARPDWMIITVLPVPPLAVRPAVVMYGATRNQDDLT 238

Query: 264  HQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIK 323
            H+LA II+ N  LRR E+NGA +HI++E  ++LQFH+ T  DN++PG P+A Q+SGRP+K
Sbjct: 239  HKLADIIKANNQLRRDEQNGAASHILAEDIRMLQFHVTTMTDNDVPGLPKAIQKSGRPLK 298

Query: 324  SICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPY 383
            SI +RLK K GRIRGNLMGKRVDFSARTVIT DP +N+DQ+GVP +IA NLTYPE VT +
Sbjct: 299  SIKTRLKGKAGRIRGNLMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPENVTQF 358

Query: 384  NIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGD 443
            NI+ L++LV+ G   P    GAK+I+R++G R+DLRY  K +D  L++GY VERH+ + D
Sbjct: 359  NIDHLQKLVQNGTLYP----GAKFIVRENGDRIDLRYHPKVADLTLQVGYVVERHMLNDD 414

Query: 444  FVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAE 503
            +V+FNRQP+LHKMS+M HR+K++P+STFRLNLSVTSPYNADFDGDEMN+H+PQS ET+AE
Sbjct: 415  YVIFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAE 474

Query: 504  VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV 563
            + +L  V + +++PQ+N+PVM IVQDTL    K+T+RD F+ +   MN+LM+   ++G++
Sbjct: 475  ISQLARVSRLVITPQANKPVMSIVQDTLTAVNKMTQRDVFLNRAEMMNLLMYLPTWNGRM 534

Query: 564  PQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG----ILTAGDTLVRIEKGE 619
            P+P I KP+ LWTGKQ+F LIIP ++N  RT + H +++ G     ++ GDT V ++ G+
Sbjct: 535  PKPAIYKPQRLWTGKQLFTLIIPGRVNCIRTHSTHPEDEDGGPYRWISPGDTKVIVDDGD 594

Query: 620  LLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 679
            L++G LCKKTLG+ +GSLIH++  E   +    F  + Q +VN WLL    +IGI DT+ 
Sbjct: 595  LIAGILCKKTLGSGSGSLIHIVALEHHHEQVSMFFNNIQTVVNNWLLIEGHTIGIADTLY 654

Query: 680  DAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGS 739
            D  T   I +TI+KAK+ V  +I QA +  L+P PG T+ ++FEN VN++LN ARD+ GS
Sbjct: 655  DQATRRQIGETITKAKDAVFEIIDQAHNYDLQPTPGNTLRQTFENSVNKILNDARDKTGS 714

Query: 740  SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDD 799
             AQ+SLS+ NN   MV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF +DD
Sbjct: 715  CAQRSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIQDD 774

Query: 800  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
            YGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MVK
Sbjct: 775  YGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVK 834

Query: 860  YDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYM 919
            YDGTVRN +  +IQ  YGEDG+D+  +E Q L + K   + F+  FRF++  E      M
Sbjct: 835  YDGTVRNQINQLIQLRYGEDGLDATHVEFQRLPTFKPSHAAFEHGFRFDIGNERALRRCM 894

Query: 920  LQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKT 979
             ++ +  L T  + +   DAE  +L ADR  L + I  + D +  LP N+ RL+ NAQK 
Sbjct: 895  PEDVVRSLATDSQTQAELDAEWMQLCADRETLRSIIRKT-DDTVVLPCNINRLVMNAQKI 953

Query: 980  FKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKR 1039
            F++DP   +++HP +VVE V +  +RL VVPG+D LS EA  NATL    L+RS+  +K+
Sbjct: 954  FEIDPLSKTNVHPRQVVEMVRETCKRLVVVPGDDRLSREANANATLLMGALIRSSLCAKK 1013

Query: 1040 VLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1099
            V+ E+RL+ EA +WV+GEI +RF Q+ + PGEM+G +AAQS+GEPATQMTLNTFHYAGVS
Sbjct: 1014 VINEYRLSYEALDWVLGEIRARFQQAQIHPGEMVGALAAQSLGEPATQMTLNTFHYAGVS 1073

Query: 1100 AKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEAT 1159
            AKNVTLGVPRL+EIINV+KK KTPS++++L        ER K+V   LE+TTLR +  +T
Sbjct: 1074 AKNVTLGVPRLKEIINVSKKPKTPSMTIYLTGPAARDAERTKDVVARLEHTTLRRLVNST 1133

Query: 1160 EVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAV 1219
             ++YDPDP  +++EED E+V +YYE+PD D+    IS W+LRIE  R+ M  KKLSM  +
Sbjct: 1134 YIYYDPDPKNSVVEEDREWVSTYYELPDFDV--NAISSWMLRIEFARKGMTGKKLSMEQI 1191

Query: 1220 AEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPK----GELNDESAEDDVFLKKIES 1275
            ++KI + F +DL C   DDN  KL++RIRIMN +  K     +   +  EDD FL+ IE+
Sbjct: 1192 SDKITRAFGNDLICHIPDDNL-KLVMRIRIMNSDLEKDLKEADTTSDKMEDDTFLRFIEA 1250

Query: 1276 NMLTEMALRGV----------------------------------------NLLAVMCHE 1295
            N+L+++ L+G+                                         L+ V+   
Sbjct: 1251 NLLSDITLQGIPQITKVYMHRPQTQDKKRVVIKDDGSFDAVAEWMLETDGTCLMRVLAER 1310

Query: 1296 DVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1355
            DVD  RT SN ++EI E LGIEAVR+A+  E+  VISFDGSYVNYRHLA+LCD MT +GH
Sbjct: 1311 DVDPTRTVSNDIVEIFEALGIEAVRKAIECEMYHVISFDGSYVNYRHLALLCDIMTVKGH 1370

Query: 1356 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGD 1415
            LMAITRHG+NR DTG + RCSFEETVDIL+DAA  AE D + GV+E IMLGQLA IGTG 
Sbjct: 1371 LMAITRHGLNRLDTGALARCSFEETVDILMDAATHAECDPMAGVSETIMLGQLAKIGTGC 1430

Query: 1416 CSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSP 1475
              L L+    + A  + L   +     GM      +   P  +G+ SPG   S      P
Sbjct: 1431 FDLLLDSAKCQEAQPIPLAGVV-----GMG-----LFNAPGFEGIASPGLGLSMGPDGLP 1480

Query: 1476 VTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1535
            V        VG + +       +SP+  G   +SP Y     G +      +P S  +SP
Sbjct: 1481 V-------LVGDIGYQTPWDSAHSPA--GSIDASPNYRGALGGAT------APHSAMFSP 1525

Query: 1536 TSPTYSPSSPGYSP------TSPAYSPTSPS--YSPTSPSYSPTSP-------------- 1573
                 S  SPG SP      T  A+SP + +   SP S + +P +               
Sbjct: 1526 AVRYDSSLSPGRSPQLDSPRTPEAFSPAAYTSFASPLSLAGTPQTELGSPGSSPGHSGSM 1585

Query: 1574 ----------------SYSPT-SPSY------SPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
                             +SP   PSY      S  S      SP++S    SY P S  Y
Sbjct: 1586 SSGSFGYGGSGSLRADIFSPIHKPSYAGTGSSSSFSAGADSNSPTFS-LQQSYEPMSVGY 1644

Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
            +  SP +   S     +S SY P+S S    + SYSP SP  +    S S     +S T 
Sbjct: 1645 TQRSPHHPSFSGYGMISSGSYGPSSDSPDSINYSYSPHSPMPTGGGSSASRDYIGWS-TL 1703

Query: 1671 PG-------------------YSPTSPSYSPTSPTYSPTSPSYNPQSAKYS-PSLAYSPS 1710
            PG                    S + PS+ P S   SP S + +P + +YS P+LA S S
Sbjct: 1704 PGSETPGVSPSSPSPGMSASSLSGSRPSFYPNSQPASPLSFNASPSAPRYSPPTLAGSSS 1763

Query: 1711 SPRLSPASPYSPTSPNYSPTSSSYSPT-SPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQ 1769
                SP    +P+SP  +P+ +   P+ SP   P++P Y  S   + G G    S S   
Sbjct: 1764 MESYSPQMT-TPSSPGGAPSGTLGGPSHSPLSYPTTPNYPISHGMSTGMGTGLGSSSLLG 1822

Query: 1770 YSPS--AGYSPSAPGYSPSS----TSQYTPQTNRDDSTT 1802
            YS +  +G +  A  YSPS+    +S Y   T R  ST+
Sbjct: 1823 YSGTGFSGSTLGASAYSPSTLQTPSSHYLMTTPRPGSTS 1861


>gi|221486415|gb|EEE24676.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
            gondii GT1]
 gi|221508191|gb|EEE33778.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
            gondii VEG]
          Length = 1892

 Score = 1607 bits (4160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 907/1889 (48%), Positives = 1199/1889 (63%), Gaps = 193/1889 (10%)

Query: 12   VAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTA 71
            + +V  +QFG+ S +++R+MSV ++   E  E G PK  GL+D RLGT+D + +C TC  
Sbjct: 16   LKRVDQLQFGVFSSEQLRKMSVCEVTTSELYEHGMPKANGLNDLRLGTLDYRQQCRTCNM 75

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPK 131
            ++  CPGHFGHL L KP++H GF+  VL ++R VC+ C K+L D  D K +  LKIR+P 
Sbjct: 76   DVKNCPGHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACGKLLVDRRDPKMQHILKIRSPS 135

Query: 132  NRLKKILDACKNKTKCEGGDEIDVPGQDGEEPL-KKNKGGCGAQQPKLTIEGMKMIAEYK 190
             RLK +LDAC  + +CEG   + +P      PL ++ +GGCG  QP+   EG  ++  + 
Sbjct: 136  RRLKHVLDACAGRKRCEG--YLPLPADGMPVPLAEEGEGGCGCVQPRYFKEGPNIMVLFP 193

Query: 191  AQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP 250
              R++ D  E + E + R     AE    VL+RIS+ED +++G +P+ A P   IL  LP
Sbjct: 194  DNREEGD--EDVTEDIRR--IFAAEEAYAVLRRISEEDLKMMGFDPERAHPASFILSTLP 249

Query: 251  IPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIA 301
            IPP  VRPS         DDLT +L  I++ N +L+RQ  +  P+ ++ E   LLQ+H+ 
Sbjct: 250  IPPLAVRPSVQYGSARSEDDLTLKLVDIVKTNLSLKRQG-DSVPSAVLQEMVMLLQYHVT 308

Query: 302  TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 361
            T FDN++PG P AT R  +PIKSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP + I
Sbjct: 309  TLFDNDIPGMPVATTRGKKPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPMLPI 368

Query: 362  DQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYL 421
            D +GVP SIA+ LTYPE VTP NI +L++LV+ GP   PG   AKY+IRDDG R DLR+ 
Sbjct: 369  DTVGVPKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDWPG---AKYVIRDDGSRFDLRHA 425

Query: 422  KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPY 481
            KK  +  LE+GY+VERH+ DGDFVLFNRQPSLHKMSIMGH++KI+PYSTFRLNLSVTSPY
Sbjct: 426  KKGGEVVLEVGYRVERHMRDGDFVLFNRQPSLHKMSIMGHQVKILPYSTFRLNLSVTSPY 485

Query: 482  NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRD 541
            NADFDGDEMN+H+ QS ETRAE+  LM VPK IVSPQ N+PVMGIVQD+LL   K T+RD
Sbjct: 486  NADFDGDEMNLHLAQSEETRAEIKHLMKVPKQIVSPQGNKPVMGIVQDSLLAVSKFTRRD 545

Query: 542  TFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII-----------PKQIN 590
            TF+ K +  N+L+    + G VP P IL P PLWTGKQ+F+L++             +IN
Sbjct: 546  TFLTKPMVYNLLLQIPYWSGVVPPPAILHPVPLWTGKQLFSLLLFFDSSVSGGNTKTRIN 605

Query: 591  LFR-TAAWHADNDKG--ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
            + R   A   D  K    L+  D  V I +GELL+G +CKK +G+++GSLIH++W E GP
Sbjct: 606  MQRDVGAGLVDRKKENLFLSERDERVIIRQGELLAGKICKKIVGSASGSLIHLLWLEAGP 665

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            +  + FL   Q L NYWLL   F++G  D IA+ +T E + D + +AK  V  LI+ A  
Sbjct: 666  ERTKDFLSTLQKLTNYWLLHQGFTVGCKDIIANEETNEKVRDILDQAKKEVDKLIRLAHR 725

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LE +PG+++ ESFE +VN+ LN+AR+ +G  A +SL ESNN+ AMV AGSKGS INIS
Sbjct: 726  GRLESQPGKSLRESFEARVNKELNSARERSGKVAAESLDESNNIMAMVLAGSKGSTINIS 785

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIPFGF +R+LPHF K DY P+SRGFVENSYL GL P E FFHAMG
Sbjct: 786  QIMACVGQQNVEGKRIPFGFNERSLPHFHKFDYSPQSRGFVENSYLSGLEPHELFFHAMG 845

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREG+IDTA KTSETGYIQRRL+KAMED+MV YD TVRNS+ +V+QFLYGEDGM   ++E
Sbjct: 846  GREGIIDTACKTSETGYIQRRLMKAMEDVMVYYDRTVRNSICEVLQFLYGEDGMSGEFVE 905

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
             QT++ + +   +  + +R ++D+E++   ++  E  +++ T  EL+   + E + +  D
Sbjct: 906  DQTVELMTLDNEKLKRLYRHDVDQESYGKGWLSDELRNEILTDYELQQPLEEEFEAIRED 965

Query: 948  RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTF-KVDPRRPSDMHPMEVVEAVDK-LQER 1005
            + +L   I   G++   +P+N+ RL+  A+  F   D  R     P+E+   V++ L E+
Sbjct: 966  KNRLCRHIFKDGETKQHIPINILRLLEFAKAQFPSGDSSRKQS--PIEIARKVNELLNEK 1023

Query: 1006 LKVVP---GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
            L VV      D +S E Q+NAT+F    LR+   S+R+L+   +  +A +W++GE+E  F
Sbjct: 1024 LVVVKQTTNADAISAEVQENATIFMKAHLRTVLNSRRLLERECIGPKALQWLLGEVERHF 1083

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             ++L   GE +G +AAQSIGEPATQMTLNTFH+AGV +KNVTLGVPRL+E+INVAK++KT
Sbjct: 1084 HRALAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKQVKT 1143

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PSL+V+L+  +   +ERAK+VQ  LE+TTL  VT  ++V YDPDP  TII +D ++V+ Y
Sbjct: 1144 PSLTVYLQDEIAMDQERAKDVQTHLEHTTLDRVTVVSQVIYDPDPTDTIIPQDRQWVRDY 1203

Query: 1183 YEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEF-DDDLTCIFNDDNAD 1241
            YE PD+D  P  +  WLLRI++  ++M+DKKL+M  + EKI  EF +++L CI+ DDN+D
Sbjct: 1204 YEFPDDDELPSNLGRWLLRIQMASKVMIDKKLTMKEIGEKIYAEFPNEELDCIWTDDNSD 1263

Query: 1242 KLILRIRIMND----EAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-NLLAVMCHED 1296
             L+LRIR+       E    + +D +   D FL+K+    L  + LRG+ N+  V   E+
Sbjct: 1264 DLVLRIRLKQQPGEGEDEDKDEDDVAEAGDRFLQKLMVQCLAGITLRGITNISKVYMREE 1323

Query: 1297 -----------------------------------VDARRTTSNHLIEIIEVLGIEAVRR 1321
                                               VD  RTTSN + EI  VLGIEAVRR
Sbjct: 1324 ARTIYNNQLGKFERTNNWVLDTDGCNLEDVLPIPMVDDTRTTSNDMTEIFHVLGIEAVRR 1383

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ALL ELR VISFDGSYVNYRHLAILCDTMT +G+LM+ITRHGINR D GP+M+CSFEETV
Sbjct: 1384 ALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRIDKGPLMKCSFEETV 1443

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL- 1440
            +IL++AAVFAE+D+LRGVTENIM+GQL P+GTG   + +++E LK+A        ++GL 
Sbjct: 1444 EILMEAAVFAEADHLRGVTENIMMGQLCPLGTGYFDVLIDEEKLKDA-----SHNLDGLG 1498

Query: 1441 ---EFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPT-SSP 1496
               EF      SP S  P    +++P   F+P    SP  ++ FSP    M FS   SS 
Sbjct: 1499 GAGEFDGGVGTSPTSSDPL---VITPDGSFTP----SPHLNSVFSP----MPFSTVYSSF 1547

Query: 1497 GYSPSSPGYSPSSPGYSPTSPGYSPTSPG--YSPTSPGYSPTSPTYSPSSP--GYSPTSP 1552
              SP++P  SP++ G   T+ G      G  +SPT    +P SPT SP SP   +SP +P
Sbjct: 1548 AASPANP-LSPTTLG---TNAGVDTQQLGGKFSPTQ--QTPRSPT-SPLSPLSCFSPRNP 1600

Query: 1553 AYSPTSPSYSPTSPSYSPTSP--------------------SYSPTSPSYSPTSPSYSP- 1591
              SP SPS  P    +SPTSP                    +Y     S S      SP 
Sbjct: 1601 -LSPLSPS-GPPGGVFSPTSPILGSALETSSPSYSPSSPQSAYFQNDGSSSAVDMVISPG 1658

Query: 1592 --------TSPSYSPT-------------------SPSYSPTSPAYSPTSPA-------- 1616
                       SYSPT                   SP+YSPTS A S  SP         
Sbjct: 1659 GVGSDGRGRGGSYSPTSPTLSPSYSPSSPPSYSPTSPAYSPTS-ALSIASPVPGVGGDGR 1717

Query: 1617 --YSPTSPAYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
               SP SP+ +P SP +S  S SYSPTSP    +PTSP+ SP SP+YSPTSP YSPTSP 
Sbjct: 1718 TPLSPFSPSNNPMSPHFS-ASTSYSPTSPVQQSNPTSPT-SPYSPAYSPTSPRYSPTSPM 1775

Query: 1673 YSPTSPSYSPTSPTY----SPTSPSYNPQSAKYSPS--LAYSPSSPRLSPASPYSPTSPN 1726
            YSPT   YSP SP+Y     P SPS+  QS +YSPS   AYSP+SP      P    SP+
Sbjct: 1776 YSPTFAPYSPQSPSYGAGQGPLSPSFTVQSPRYSPSSPAAYSPTSPM-----PNVAGSPS 1830

Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSPYN 1755
            Y     S++P   +YSP+SP Y  + P++
Sbjct: 1831 Y---EDSHAPGGDTYSPTSPMYEANDPFS 1856


>gi|237833803|ref|XP_002366199.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
            gondii ME49]
 gi|211963863|gb|EEA99058.1| DNA-directed RNA polymerase II largest subunit, putative [Toxoplasma
            gondii ME49]
          Length = 1892

 Score = 1605 bits (4157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 902/1898 (47%), Positives = 1194/1898 (62%), Gaps = 211/1898 (11%)

Query: 12   VAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTA 71
            + +V  +QFG+ S +++R+MSV ++   E  E G PK  GL+D RLGT+D + +C TC  
Sbjct: 16   LKRVDQLQFGVFSSEQLRKMSVCEVTTSELYEHGMPKANGLNDLRLGTLDYRQQCRTCNM 75

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPK 131
            ++  CPGHFGHL L KP++H GF+  VL ++R VC+ C K+L D  D K +  LKIR+P 
Sbjct: 76   DVKNCPGHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACGKLLVDRRDPKMQHILKIRSPS 135

Query: 132  NRLKKILDACKNKTKCEGGDEIDVPGQDGEEPL-KKNKGGCGAQQPKLTIEGMKMIAEYK 190
             RLK +LDAC  + +CEG   + +P      PL ++ +GGCG  QP+   EG  ++  + 
Sbjct: 136  RRLKHVLDACAGRKRCEG--YLPLPADGMPVPLAEEGEGGCGCVQPRYFKEGPNIMVLFP 193

Query: 191  AQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP 250
              R++ D  E + E + R     AE    VL+RIS+ED +++G +P+ A P   IL  LP
Sbjct: 194  DNREEGD--EDVTEDIRR--IFAAEEAYAVLRRISEEDLKMMGFDPERAHPASFILSTLP 249

Query: 251  IPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIA 301
            IPP  VRPS         DDLT +L  I++ N +L+RQ  +  P  ++ E   LLQ+H+ 
Sbjct: 250  IPPLAVRPSVQYGSARSEDDLTLKLVDIVKTNLSLKRQG-DSVPGAVLQEMVMLLQYHVT 308

Query: 302  TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 361
            T FDN++PG P AT R  +PIKSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP + I
Sbjct: 309  TLFDNDIPGMPVATTRGKKPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPMLPI 368

Query: 362  DQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYL 421
            D +GVP SIA+ LTYPE VTP NI +L++LV+ GP   PG   AKY+IRDDG R DLR+ 
Sbjct: 369  DTVGVPKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDWPG---AKYVIRDDGSRFDLRHA 425

Query: 422  KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPY 481
            KK  +  LE+GY+VERH+ DGDFVLFNRQPSLHKMSIMGH++KI+PYSTFRLNLSVTSPY
Sbjct: 426  KKGGEVVLEVGYRVERHMRDGDFVLFNRQPSLHKMSIMGHQVKILPYSTFRLNLSVTSPY 485

Query: 482  NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRD 541
            NADFDGDEMN+H+ QS ETRAE+  LM VPK IVSPQ N+PVMGIVQD+LL   K T+RD
Sbjct: 486  NADFDGDEMNLHLAQSEETRAEIKHLMKVPKQIVSPQGNKPVMGIVQDSLLAVSKFTRRD 545

Query: 542  TFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII-----------PKQIN 590
            TF+ K +  N+L+    + G VP P IL P PLWTGKQ+F+L++             +IN
Sbjct: 546  TFLTKPMVYNLLLQIPYWSGVVPPPAILHPVPLWTGKQLFSLLLFFDSSVSGGNTKTRIN 605

Query: 591  LFR-TAAWHADNDKG--ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
            + R   A   D  K    L+  D  V I +GELL+G +CKK +G+++GSLIH++W E GP
Sbjct: 606  MQRDVGAGLVDRKKENLFLSERDERVIIRQGELLAGKICKKIVGSASGSLIHLLWLEAGP 665

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            +  + FL   Q L NYWLL   F++G  D IA+ +T E + D + +AK  V  LI+ A  
Sbjct: 666  ERTKDFLSTLQKLTNYWLLHQGFTVGCKDIIANEETNEKVRDILDQAKKEVDKLIRLAHR 725

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LE +PG+++ ESFE +VN+ LN+AR+ +G  A +SL ESNN+ AMV AGSKGS INIS
Sbjct: 726  GRLESQPGKSLRESFEARVNKELNSARERSGKVAAESLDESNNIMAMVLAGSKGSTINIS 785

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIPFGF +R+LPHF K DY P+SRGFVENSYL GL P E FFHAMG
Sbjct: 786  QIMACVGQQNVEGKRIPFGFNERSLPHFHKFDYSPQSRGFVENSYLSGLEPHELFFHAMG 845

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREG+IDTA KTSETGYIQRRL+KAMED+MV YD TVRNS+ +V+QFLYGEDGM   ++E
Sbjct: 846  GREGIIDTACKTSETGYIQRRLMKAMEDVMVYYDRTVRNSICEVLQFLYGEDGMSGEFVE 905

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
             QT++ + +   +  + +R ++D+E++   ++  E  +++ T  EL+   + E + +  D
Sbjct: 906  DQTVELMTLDNEKLKRLYRHDVDQESYGKGWLSDELRNEILTDYELQQPLEEEFEAIRED 965

Query: 948  RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTF-KVDPRRPSDMHPMEVVEAVDK-LQER 1005
            + +L   I   G++   +P+N+ RL+  A+  F   D  R     P+E+   V++ L E+
Sbjct: 966  KNRLCRHIFKDGETKQHIPINILRLLEFAKAQFPSGDSSRKQS--PIEIARKVNELLNEK 1023

Query: 1006 LKVVP---GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
            L VV      D +S E Q+NAT+F    LR+   S+R+L+   +  +A +W++GE+E  F
Sbjct: 1024 LVVVKQTTNADAISAEVQENATIFMKAHLRTVLNSRRLLERECIGPKALQWLLGEVERHF 1083

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             ++L   GE +G +AAQSIGEPATQMTLNTFH+AGV +KNVTLGVPRL+E+INVAK++KT
Sbjct: 1084 HRALAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKQVKT 1143

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            PSL+V+L+  +   +ERAK+VQ  LE+TTL  VT  ++V YDPDP  TII +D ++V+ Y
Sbjct: 1144 PSLTVYLQDEIAMDQERAKDVQTHLEHTTLDRVTVVSQVIYDPDPTDTIIPQDRQWVRDY 1203

Query: 1183 YEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEF-DDDLTCIFNDDNAD 1241
            YE PD+D  P  +  WLLRI++  ++M+DKKL+M  + EKI  EF +++L CI+ DDN+D
Sbjct: 1204 YEFPDDDELPSNLGRWLLRIQMASKVMIDKKLTMKEIGEKIYAEFPNEELDCIWTDDNSD 1263

Query: 1242 KLILRIRIMND----EAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-NLLAVMCHED 1296
             L+LRIR+       E    + +D +   D FL+K+    L  + LRG+ N+  V   E+
Sbjct: 1264 DLVLRIRLKQQPGEGEDEDKDEDDVAEAGDRFLQKLMVQCLAGITLRGITNISKVYMREE 1323

Query: 1297 -----------------------------------VDARRTTSNHLIEIIEVLGIEAVRR 1321
                                               VD  RTTSN + EI  VLGIEAVRR
Sbjct: 1324 ARTIYNNQLGKFERTNNWVLDTDGCNLEDVLPIPMVDDTRTTSNDMTEIFHVLGIEAVRR 1383

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ALL ELR VISFDGSYVNYRHLAILCDTMT +G+LM+ITRHGINR D GP+M+CSFEETV
Sbjct: 1384 ALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRIDKGPLMKCSFEETV 1443

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL- 1440
            +IL++AAVFAE+D+LRGVTENIM+GQL P+GTG   + +++E LK+A        ++GL 
Sbjct: 1444 EILMEAAVFAEADHLRGVTENIMMGQLCPLGTGYFDVLIDEEKLKDA-----SHNLDGLG 1498

Query: 1441 ---EFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPT-SSP 1496
               EF      SP S  P    +++P   F+P    SP  ++ FSP    M FS   SS 
Sbjct: 1499 GAGEFDGGVGTSPTSSDPL---VITPDGSFTP----SPHLNSVFSP----MPFSTVYSSF 1547

Query: 1497 GYSPSSPGYSPSSPG-------------YSPTSPG-YSPTSP-----GYSPTSPGYSPTS 1537
              SP++P  SP++ G             +SPT     SPTSP      +SP +P  SP S
Sbjct: 1548 AASPANP-LSPTTLGTNAGVDTQQLGGKFSPTQQTPRSPTSPLSPLSCFSPRNP-LSPLS 1605

Query: 1538 PTYSPSSPGYSPTSP--------------------AYSPTSPSYSPTSPSYSP------- 1570
            P+  P    +SPTSP                    AY     S S      SP       
Sbjct: 1606 PSGPPGGV-FSPTSPILGSALETSSPSYSPSSPQSAYFQNDGSSSAVDMVISPGGVGSDG 1664

Query: 1571 --TSPSYSPTSPS-------------------YSPTSPSYSPTSPS----------YSPT 1599
                 SYSPTSP+                   YSPTS + S  SP            SP 
Sbjct: 1665 RGRGGSYSPTSPTLSPSYSPSAPPSYSPTSPAYSPTS-ALSIASPVPGVGGDGRTPLSPF 1723

Query: 1600 SPSYSPTSPAYSPTSPAYSPTSPAY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
            SPS +P SP +S  S +YSPTSP    +PTSP+ SP SP+YSPTSP YSPTSP YSPT  
Sbjct: 1724 SPSNNPMSPHFS-ASTSYSPTSPVQQSNPTSPT-SPYSPAYSPTSPRYSPTSPMYSPTFA 1781

Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
             YSP SP+Y     G  P SPS++  SP YSP+SP+            AYSP+SP     
Sbjct: 1782 PYSPQSPSY---GAGQGPLSPSFTVQSPRYSPSSPA------------AYSPTSPM---- 1822

Query: 1718 SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYN 1755
             P    SP+Y     S++P   +YSP+SP Y  + P++
Sbjct: 1823 -PNVAGSPSY---EDSHAPGGDTYSPTSPMYEANDPFS 1856


>gi|374107397|gb|AEY96305.1| FADR086Cp [Ashbya gossypii FDAG1]
          Length = 1738

 Score = 1605 bits (4157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 835/1586 (52%), Positives = 1097/1586 (69%), Gaps = 110/1586 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            FPYS A +  ++ VQFG+ SP+E+R +SV +IE  ET +  + + K GGL+DPRLG+IDR
Sbjct: 4    FPYSSAPLRTIKEVQFGLFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSIDR 63

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
              KC+TC   M +CPGHFGH+ELAKP+FHIGF+  +  +   VC +C K+L DE +   +
Sbjct: 64   NFKCQTCGEGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEYNELMR 123

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK-NKGGCGAQQPKLTIE 181
            QA+KI++PK R   +   CK K  C+     +VP +D  +P K  ++GGCG  QP +  +
Sbjct: 124  QAIKIKDPKRRFNAVWSLCKAKMVCD----TEVPSED--DPSKYISRGGCGNAQPSIRKD 177

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ ++  +K  + KN +    PE    K+ ++AE +L V K IS ED   LG N  ++RP
Sbjct: 178  GLSLVGTWK--KDKNAEDADQPE----KRIISAEEILNVFKHISPEDSWRLGFNEDFSRP 231

Query: 242  DWMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            +WM+L VLP+PPPPV          R  DDLT++L  I++ N N++R E NG+P H+I E
Sbjct: 232  EWMLLTVLPVPPPPVRPSISFNESQRGEDDLTYKLGDILKANINVQRLEINGSPQHVIQE 291

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
               LLQFH+ATY DN++ GQP+A Q+SGRPIKSI +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 292  SESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSART 351

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VI+ DP +++DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD
Sbjct: 352  VISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRD 408

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTF
Sbjct: 409  NGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTF 468

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            RLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL
Sbjct: 469  RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTL 528

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
             G RK+T RDTFIE D  +N+L W  D+DG +P PTILKP+PLW+GKQ+ ++ IP  I+L
Sbjct: 529  CGIRKMTLRDTFIELDQVLNMLYWIPDWDGVIPTPTILKPKPLWSGKQLLSMAIPSGIHL 588

Query: 592  FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 651
             R      D     L+  D  + I  G+++ G + KKT+G+S+G LIHV+  E GP+   
Sbjct: 589  QRF-----DEGTTYLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPEVCA 643

Query: 652  KFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711
            K  G+ Q +VNYWLL N FSIGIGDTIAD KTM  I D I+ AK  V+ + K+AQ   L 
Sbjct: 644  KLFGNIQKVVNYWLLHNGFSIGIGDTIADEKTMREITDAIALAKKKVEEVTKEAQANLLT 703

Query: 712  PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 771
             + G T+ ESFE+ V + LN ARD+AG SA+ +L + NN+K MV+AGSKGSFINI+QM+A
Sbjct: 704  AKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSA 763

Query: 772  CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 831
            CVGQQ+VEGKRI FGF DRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREG
Sbjct: 764  CVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREG 823

Query: 832  LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL 891
            LIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLG++IQF+YGEDGMD+  IE Q++
Sbjct: 824  LIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMDAAHIEKQSI 883

Query: 892  DSLKMKKSEFDKAFRFEMDEENWNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQK 943
            D++      F+K +R ++     NPNY L         E + DLK    L+++ D E ++
Sbjct: 884  DTIPGSDLAFEKRYRIDL----LNPNYALDPNLLESGTEIVGDLK----LQNLLDEEYKQ 935

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            L  DR+ L  +I   G+ +WPLPVN++R+I NAQ+TF++D  +P+D+   +VV+ V  LQ
Sbjct: 936  LVQDRHFL-RKIFMDGEHNWPLPVNIRRIIQNAQQTFRIDSTKPTDLSIQDVVQGVRGLQ 994

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
            ERL V+ G+  +  EAQ+NA   F  LLRS  A++RV+ E+RLT++ FEWV+  IE++FL
Sbjct: 995  ERLLVLRGKSQILQEAQENAITLFCCLLRSRLATRRVITEYRLTKQTFEWVLNNIEAQFL 1054

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            +S+V PGEM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTP
Sbjct: 1055 RSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTP 1114

Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
            SL+V+L+    + +E+AK ++ A+E+TTL+SVT A+E++YDPDP  T+IEED E ++ ++
Sbjct: 1115 SLTVYLEESYATDQEKAKLIRSAIEHTTLKSVTVASEIYYDPDPSSTVIEEDEEIIQLHF 1174

Query: 1184 EMPDEDIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
             + DE+     +  SPWLLR+EL+R  M DK L+M  V EKI + F +DL  I+++DNA+
Sbjct: 1175 SLMDEETEASLKHQSPWLLRLELDRVAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAE 1234

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR----------------- 1284
            KLI+R R++ D  PK    +  AE+D  LKKIE+ ML  + LR                 
Sbjct: 1235 KLIIRCRVVRD--PKTLDAEAEAEEDHMLKKIENTMLESITLRGVQDITRVVMMKYDRKV 1292

Query: 1285 ------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDE 1326
                              GVNL  VM    VD  R  +N  I+I+ VLGIEA R AL  E
Sbjct: 1293 PSETGEYHKIPEWVLETDGVNLSEVMSVPGVDPTRIYTNSFIDIMNVLGIEAGRAALYKE 1352

Query: 1327 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1386
            +  VI+ DGSYVNYRH+A+L D MT +G LM++TRHG NR DTG +MRCSFEETV+IL +
Sbjct: 1353 VYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFE 1412

Query: 1387 AAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMT 1445
            A   AE D   GV+EN++LGQ+APIGTG   + ++DE ++K   E +L + +E  + G T
Sbjct: 1413 AGAAAELDDCSGVSENVILGQMAPIGTGSFDVMIDDESLIKYMPEQKLSTAVEVNDGGAT 1472

Query: 1446 PARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDA---------QFSPYVG---GMAFSPT 1493
            P  S         G+++        L  SP+ +A          F+ Y G   G A SP 
Sbjct: 1473 PYNSDA-------GLVNTKVDIKDELMFSPLVEAGTSDAIASGGFTAYGGADYGGATSPF 1525

Query: 1494 SSPGYSPSSPGYSP-SSPGYSPTSPG 1518
            S  G  P+SPG+   SSPG+SPTSP 
Sbjct: 1526 SGYGNGPTSPGFGDVSSPGFSPTSPA 1551


>gi|302307500|ref|NP_984182.2| ADR086Cp [Ashbya gossypii ATCC 10895]
 gi|442570012|sp|Q75A34.2|RPB1_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit 1; Short=RNA polymerase II subunit
            B1; AltName: Full=DNA-directed RNA polymerase III largest
            subunit
 gi|299789031|gb|AAS52006.2| ADR086Cp [Ashbya gossypii ATCC 10895]
          Length = 1745

 Score = 1605 bits (4157), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 835/1586 (52%), Positives = 1097/1586 (69%), Gaps = 110/1586 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            FPYS A +  ++ VQFG+ SP+E+R +SV +IE  ET +  + + K GGL+DPRLG+IDR
Sbjct: 4    FPYSSAPLRTIKEVQFGLFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSIDR 63

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
              KC+TC   M +CPGHFGH+ELAKP+FHIGF+  +  +   VC +C K+L DE +   +
Sbjct: 64   NFKCQTCGEGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEYNELMR 123

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK-NKGGCGAQQPKLTIE 181
            QA+KI++PK R   +   CK K  C+     +VP +D  +P K  ++GGCG  QP +  +
Sbjct: 124  QAIKIKDPKRRFNAVWSLCKAKMVCD----TEVPSED--DPSKYISRGGCGNAQPSIRKD 177

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ ++  +K  + KN +    PE    K+ ++AE +L V K IS ED   LG N  ++RP
Sbjct: 178  GLSLVGTWK--KDKNAEDADQPE----KRIISAEEILNVFKHISPEDSWRLGFNEDFSRP 231

Query: 242  DWMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            +WM+L VLP+PPPPV          R  DDLT++L  I++ N N++R E NG+P H+I E
Sbjct: 232  EWMLLTVLPVPPPPVRPSISFNESQRGEDDLTYKLGDILKANINVQRLEINGSPQHVIQE 291

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
               LLQFH+ATY DN++ GQP+A Q+SGRPIKSI +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 292  SESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSART 351

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VI+ DP +++DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD
Sbjct: 352  VISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRD 408

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTF
Sbjct: 409  NGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTF 468

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            RLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL
Sbjct: 469  RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTL 528

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
             G RK+T RDTFIE D  +N+L W  D+DG +P PTILKP+PLW+GKQ+ ++ IP  I+L
Sbjct: 529  CGIRKMTLRDTFIELDQVLNMLYWIPDWDGVIPTPTILKPKPLWSGKQLLSMAIPSGIHL 588

Query: 592  FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 651
             R      D     L+  D  + I  G+++ G + KKT+G+S+G LIHV+  E GP+   
Sbjct: 589  QRF-----DEGTTYLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPEVCA 643

Query: 652  KFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711
            K  G+ Q +VNYWLL N FSIGIGDTIAD KTM  I D I+ AK  V+ + K+AQ   L 
Sbjct: 644  KLFGNIQKVVNYWLLHNGFSIGIGDTIADEKTMREITDAIALAKKKVEEVTKEAQANLLT 703

Query: 712  PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 771
             + G T+ ESFE+ V + LN ARD+AG SA+ +L + NN+K MV+AGSKGSFINI+QM+A
Sbjct: 704  AKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSA 763

Query: 772  CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 831
            CVGQQ+VEGKRI FGF DRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREG
Sbjct: 764  CVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREG 823

Query: 832  LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL 891
            LIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLG++IQF+YGEDGMD+  IE Q++
Sbjct: 824  LIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMDAAHIEKQSI 883

Query: 892  DSLKMKKSEFDKAFRFEMDEENWNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQK 943
            D++      F+K +R ++     NPNY L         E + DLK    L+++ D E ++
Sbjct: 884  DTIPGSDLAFEKRYRIDL----LNPNYALDPNLLESGTEIVGDLK----LQNLLDEEYKQ 935

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            L  DR+ L  +I   G+ +WPLPVN++R+I NAQ+TF++D  +P+D+   +VV+ V  LQ
Sbjct: 936  LVQDRHFL-RKIFMDGEHNWPLPVNIRRIIQNAQQTFRIDSTKPTDLSIQDVVQGVRGLQ 994

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
            ERL V+ G+  +  EAQ+NA   F  LLRS  A++RV+ E+RLT++ FEWV+  IE++FL
Sbjct: 995  ERLLVLRGKSQILQEAQENAITLFCCLLRSRLATRRVITEYRLTKQTFEWVLNNIEAQFL 1054

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            +S+V PGEM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTP
Sbjct: 1055 RSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTP 1114

Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
            SL+V+L+    + +E+AK ++ A+E+TTL+SVT A+E++YDPDP  T+IEED E ++ ++
Sbjct: 1115 SLTVYLEESYATDQEKAKLIRSAIEHTTLKSVTVASEIYYDPDPSSTVIEEDEEIIQLHF 1174

Query: 1184 EMPDEDIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
             + DE+     +  SPWLLR+EL+R  M DK L+M  V EKI + F +DL  I+++DNA+
Sbjct: 1175 SLMDEETEASLKHQSPWLLRLELDRVAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAE 1234

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR----------------- 1284
            KLI+R R++ D  PK    +  AE+D  LKKIE+ ML  + LR                 
Sbjct: 1235 KLIIRCRVVRD--PKTLDAEAEAEEDHMLKKIENTMLESITLRGVQDITRVVMMKYDRKV 1292

Query: 1285 ------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDE 1326
                              GVNL  VM    VD  R  +N  I+I+ VLGIEA R AL  E
Sbjct: 1293 PSETGEYHKIPEWVLETDGVNLSEVMSVPGVDPTRIYTNSFIDIMNVLGIEAGRAALYKE 1352

Query: 1327 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1386
            +  VI+ DGSYVNYRH+A+L D MT +G LM++TRHG NR DTG +MRCSFEETV+IL +
Sbjct: 1353 VYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFE 1412

Query: 1387 AAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMT 1445
            A   AE D   GV+EN++LGQ+APIGTG   + ++DE ++K   E +L + +E  + G T
Sbjct: 1413 AGAAAELDDCSGVSENVILGQMAPIGTGSFDVMIDDESLIKYMPEQKLSTAVEVNDGGAT 1472

Query: 1446 PARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDA---------QFSPYVG---GMAFSPT 1493
            P  S         G+++        L  SP+ +A          F+ Y G   G A SP 
Sbjct: 1473 PYNSDA-------GLVNTKVDIKDELMFSPLVEAGTSDAIASGGFTAYGGADYGGATSPF 1525

Query: 1494 SSPGYSPSSPGYSP-SSPGYSPTSPG 1518
            S  G  P+SPG+   SSPG+SPTSP 
Sbjct: 1526 SGYGNGPTSPGFGDVSSPGFSPTSPA 1551


>gi|401409792|ref|XP_003884344.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
            caninum Liverpool]
 gi|325118762|emb|CBZ54313.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
            caninum Liverpool]
          Length = 1901

 Score = 1604 bits (4153), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 898/1894 (47%), Positives = 1192/1894 (62%), Gaps = 185/1894 (9%)

Query: 12   VAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTA 71
            + +V  +QFG+ S ++IR+MSV ++   E  E G PK  GL+D RLGT+D + +C TC  
Sbjct: 16   LKRVDQLQFGVFSSEQIRKMSVCEVTTSELYEHGMPKANGLNDLRLGTLDYRQQCRTCNM 75

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPK 131
            ++  CPGHFGHL L KP++H GF+  VL ++R VC+ C K+L D  D K +Q LKIR+P 
Sbjct: 76   DVKNCPGHFGHLNLVKPVYHYGFLGAVLRVLRCVCYACGKLLVDRRDPKMQQVLKIRSPS 135

Query: 132  NRLKKILDACKNKTKCEGGDEIDVPGQDGEEPL-KKNKGGCGAQQPKLTIEGMKMIAEYK 190
             RLK +LDAC  + +CEG   + +P      PL ++ +GGCG  QP+   EG  ++  + 
Sbjct: 136  RRLKHVLDACSGRKRCEG--YLPLPTDGAPAPLAEEGEGGCGCVQPRYFKEGPNIMVLFP 193

Query: 191  AQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP 250
              R++ D  E + E + R     AE    VL+RIS++D +++G +P+ A P   IL  LP
Sbjct: 194  DNREEGD--EDVAEDIRR--IFAAEEAYTVLRRISEDDLKMMGFDPERAHPASFILSTLP 249

Query: 251  IPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIA 301
            IPP  VRPS         DDLT +L  I++ N +L+RQ  +  P+ ++ E   LLQ+H+ 
Sbjct: 250  IPPLAVRPSVQYGSARSEDDLTLKLVDIVKTNLSLKRQG-DSVPSAVLQEMVMLLQYHVT 308

Query: 302  TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 361
            T FDN++PG P AT R  +PIKSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP + I
Sbjct: 309  TLFDNDIPGMPVATTRGKKPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPMLPI 368

Query: 362  DQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYL 421
            D +GVP SIA+ LTYPE VTP NI +L++LV+ GP   PG   AKY+IRDDG R DLR+ 
Sbjct: 369  DTVGVPKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDWPG---AKYVIRDDGSRFDLRHA 425

Query: 422  KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPY 481
            KK  +  LE+GY+VERH+ DGDFVLFNRQPSLHKMSIMGH++KI+PYSTFRLNLSVTSPY
Sbjct: 426  KKGGEVVLEVGYRVERHMRDGDFVLFNRQPSLHKMSIMGHQVKILPYSTFRLNLSVTSPY 485

Query: 482  NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRD 541
            NADFDGDEMN+H+ QS ETRAE+  LM VPK IVSPQ N+PVMGIVQD+LL   K T+RD
Sbjct: 486  NADFDGDEMNLHLAQSEETRAEIKHLMKVPKQIVSPQGNKPVMGIVQDSLLAVSKFTRRD 545

Query: 542  TFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII-----------PKQIN 590
            TF+ K +  NIL+    + G VP P I++P PLWTGKQ+F+L++             +IN
Sbjct: 546  TFLTKPMVYNILLQIPYWSGVVPPPAIVRPVPLWTGKQLFSLLLFFDSSVSGGNTKTRIN 605

Query: 591  LFR-TAAWHADNDKG--ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
            + R   A   D  K    ++  D  V I +GELL+G +CKK +G+++GSLIH++W E GP
Sbjct: 606  MQRDVGAGLVDRKKENLFISERDERVIIRQGELLAGKICKKIVGSASGSLIHLLWLEAGP 665

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            +  + FL   Q L NYWLL   F++G  D IA+ +T E + D + +AK  V  LI+ A  
Sbjct: 666  ERTKDFLSTLQKLTNYWLLHQGFTVGCKDIIANEETNEKVRDILDQAKKEVDKLIRLAHR 725

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LE +PG+++ ESFE +VN+ LN+AR+ +G  A +SL ESNN+ AMV AGSKGS INIS
Sbjct: 726  GRLESQPGKSLRESFEARVNKELNSARERSGKVAAESLDESNNIMAMVLAGSKGSTINIS 785

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ ACVGQQNVEGKRIPFGF +R+LPHF K DY P+SRGFVENSYL GL P E FFHAMG
Sbjct: 786  QIMACVGQQNVEGKRIPFGFNERSLPHFHKFDYSPQSRGFVENSYLSGLEPHELFFHAMG 845

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREG+IDTA KTSETGYIQRRL+KAMED+MV YD TVRNS+ +V+QFLYGEDGM   ++E
Sbjct: 846  GREGIIDTACKTSETGYIQRRLMKAMEDVMVYYDRTVRNSICEVLQFLYGEDGMSGEYVE 905

Query: 888  SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEAD 947
             QT++ + +   +  + +R ++D+E++   ++  E  +++ T  EL+   + E + +  D
Sbjct: 906  DQTVELMTLDNEKLKRLYRHDVDQESYGKGWLSDEMRNEILTDFELQQPLEEEFEAIRED 965

Query: 948  RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKV--DPRRPSDMHPMEVVEAVDK-LQE 1004
            + +L   I   G++   +P+N+ RL+  A+  F    + R+ S   P+E+   V++ L +
Sbjct: 966  KNRLCRHIFKDGETKQHIPINILRLLEFAKAQFPSGDNSRKQS---PIEIARKVNELLND 1022

Query: 1005 RLKVVP---GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            +L VV      D +S E Q+NAT+F    LR+   S+R+L+  R+  +A +W++GE+E +
Sbjct: 1023 KLVVVKQTTNADAISAEVQENATIFMKAHLRTVLNSRRLLERERVGPKALQWLLGEVERQ 1082

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F ++L   GE +G +AAQSIGEPATQMTLNTFH+AGV +KNVTLGVPRL+E+INVAK++K
Sbjct: 1083 FHRALAHAGECVGAIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVAKQVK 1142

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPSL+V+L+  +   +ERAK+VQ  LE+TTL  VT  ++V YDPDP  TII +D ++V  
Sbjct: 1143 TPSLTVYLQDEIAMDQERAKDVQTHLEHTTLDRVTVVSQVIYDPDPTDTIIPQDRQWVHD 1202

Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEF-DDDLTCIFNDDNA 1240
            YYE PD+D  P  +  WLLRI++  ++M+DKKL+M  + EKI  EF +++L CI+ DDN+
Sbjct: 1203 YYEFPDDDELPNNLGRWLLRIQMASKVMIDKKLTMKEIGEKIYAEFPNEELDCIWTDDNS 1262

Query: 1241 DKLILRIRIMND----EAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-NLLAVMCHE 1295
            D L+LRIRI +     E  + E +D S  +D FL+K+    L  + LRG+ N+  V   E
Sbjct: 1263 DDLVLRIRIKHQPGVGEGEEKEEDDVSEAEDRFLQKLMVQCLAGITLRGITNISKVYMRE 1322

Query: 1296 D-----------------------------------VDARRTTSNHLIEIIEVLGIEAVR 1320
            +                                   VD  RTTSN + EI  VLGIEAVR
Sbjct: 1323 EARTVYNVQLGKFERTNNWVLDTDGCNLEDVLPIPMVDHARTTSNDMTEIFHVLGIEAVR 1382

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
            RALL ELR VISFDGSYVNYRHLAILCDTMT +G+LM+ITRHGINR D GP+M+CSFEET
Sbjct: 1383 RALLRELRAVISFDGSYVNYRHLAILCDTMTQKGYLMSITRHGINRIDKGPLMKCSFEET 1442

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIE-LQLPSYMEG 1439
            V+IL++AAVFAE+D+L+GVTENIM+GQL P+GTG   + +++E LK+A   L       G
Sbjct: 1443 VEILMEAAVFAEADHLKGVTENIMMGQLCPLGTGYFDVLIDEEKLKDASHNLDGLGGAGG 1502

Query: 1440 LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPT------ 1493
               G     SP S         + G+L +P+   +P      SP+     FSPT      
Sbjct: 1503 DLEGGLLGGSPTSA--------ADGHLITPDGSFTP------SPHQLNSVFSPTPFSTVY 1548

Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP--GYSPTS 1551
            +S   SP++P  SP++ G S            +SPT    +P SPT SP SP   +SP  
Sbjct: 1549 TSFATSPTNP-LSPTALGGSHAGVDTQQLGGKFSPTQ--QTPRSPT-SPLSPLSCFSPRD 1604

Query: 1552 PAYSPTSPSYSPTSPSYSPTSP---------------------SYSPTSPSYSPTSPSYS 1590
            P +SP SPS  P    +SPTSP                      +     S S      S
Sbjct: 1605 P-HSPLSPSAGPPGGVFSPTSPILGSALETSSPSYSPSSPQSAYFQGNDGSSSAVDMVIS 1663

Query: 1591 PTS---------PSYSPT-------------------SPSYSPTSPAYSPTSPAYSPTSP 1622
            P            SYSPT                   SP+YSPTS   S TSP   P   
Sbjct: 1664 PGGIGDGRVRGPSSYSPTSPTLSPSYSPSSPPSYSPTSPAYSPTSAVLSVTSPVAGPGDG 1723

Query: 1623 A--YSPTSPSYSPTSPSY----------------SPTSPSYSPTSPSYSPTSPSYSPTSP 1664
                SP SPS +P SP +                +PTSP+ SP SP+YSPTSP YSPTSP
Sbjct: 1724 KTPLSPFSPSNNPMSPHFSASSPSYSPTSPVQQSNPTSPT-SPFSPAYSPTSPRYSPTSP 1782

Query: 1665 AYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS--LAYSPSSPRLSPASPYSP 1722
             YSPT   YSP SPSY   +P   P SPS+  QS +YSPS   AYSP+SP  + A+  S 
Sbjct: 1783 MYSPTFAPYSPQSPSYG-GAPGQGPLSPSFTVQSPRYSPSSPAAYSPTSPMPNVANSPSY 1841

Query: 1723 TSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNA 1756
               +      +YSPTSP Y  + P +SP  P+ A
Sbjct: 1842 DDAHAPARGGTYSPTSPMYEANDP-FSP-DPFAA 1873


>gi|258563154|ref|XP_002582322.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
            1704]
 gi|237907829|gb|EEP82230.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
            1704]
          Length = 1747

 Score = 1597 bits (4136), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 907/1839 (49%), Positives = 1182/1839 (64%), Gaps = 219/1839 (11%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTI 60
             +FP+S A +  ++ +QFG+LSP+EI++MSVV +E+ ET +  R +P+  GL+DPRLGTI
Sbjct: 4    VKFPFSKAPLRTIKEIQFGLLSPEEIKRMSVVHVEYPETMDDARQRPREKGLNDPRLGTI 63

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DR  +C TC   + +CPGHFGH+EL+ P+FHIGF+  +  ++ +VC NC KI A+ +D K
Sbjct: 64   DRNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANTNDQK 123

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD---GEEPLK--KNKGGCGAQQ 175
            +   L+ R+PK R   I    K+   CE     D P +D   G+E  K  K  GGCG  Q
Sbjct: 124  YLDGLRFRDPKRRFDAIWRLSKDVLICEA----DPPEEDEPFGKESAKMPKGHGGCGNAQ 179

Query: 176  PKLTIEGMKMIAEYKAQRKKN--DDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQLL 232
            P++  EG+ ++  +K  + ++  DD + Q PE    K+ +T +  L + + IS+ED ++L
Sbjct: 180  PQIRKEGISLVGTWKPNKMRDIMDDTDIQQPE----KKQITPQMALNIFRNISEEDVRIL 235

Query: 233  GLNPKYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQ 279
            GL+  YARP+WMI+ VLP+PPPPV             R  D LT++LA I          
Sbjct: 236  GLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSSGGQRGEDHLTYKLAEI---------- 285

Query: 280  ERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGN 339
                                                 +S RP+K+I  RLK KEGR+R N
Sbjct: 286  -------------------------------------KSNRPVKAIRGRLKGKEGRLRQN 308

Query: 340  LMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 399
            LMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPE VTPYNI +L +LV+ GP   
Sbjct: 309  LMGKRVDFSARTVITGDPNLSLDEVGVPVSIAQTLTYPEVVTPYNINKLGQLVDNGPDIH 368

Query: 400  PGKTGAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVERHLNDGDFVLFNRQPSLHKMSI 458
            PG   A+Y+IR  G+R+DLR+ K     + L+ G+KVERHL DGD +LFNRQPSLHK S+
Sbjct: 369  PG---ARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDVILFNRQPSLHKESM 425

Query: 459  MGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 518
            M HR+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L +VP  IVSPQ
Sbjct: 426  MAHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCLVPLNIVSPQ 485

Query: 519  SNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGK 578
             N P+MGIVQDTL G  KI +RD F+ K+  MNI++W  ++DG +PQP ILKPRP WTGK
Sbjct: 486  RNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIMLWVPEWDGVLPQPAILKPRPRWTGK 545

Query: 579  QVFNLIIPKQINLFRTAAWHADNDKGILTAG-----DTLVRIEKGELLSGTLCKKTLGTS 633
            Q+ ++++P  +NL R      D D+  L+       D+ + +  GEL+ G   KKT+G +
Sbjct: 546  QIISMVLPSGLNLLR-----VDRDRVPLSEKFSPLTDSGLLVHGGELMYGMFSKKTVGAT 600

Query: 634  TGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISK 693
             G ++H I+ E GPD    F    Q +VNYWLL N FSIGIGDTI D  T++ I + +  
Sbjct: 601  GGGIVHTIYNEYGPDVCMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDLATIQKIEEAVRI 660

Query: 694  AKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKA 753
             K  V ++   A + +LEP PG ++ E+FE+KV++ LN ARDEAG+  +KSL + NN   
Sbjct: 661  RKEEVDSITASATENTLEPLPGMSVRETFESKVSRALNNARDEAGTETEKSLKDLNNAVQ 720

Query: 754  MVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYL 813
            M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYL
Sbjct: 721  MARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYL 780

Query: 814  RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQ 873
            RGLTP EFFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGDVIQ
Sbjct: 781  RGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQ 840

Query: 874  FLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQ--EYIDDLKT 929
            FLYGEDG+D  +IE+Q +D +K    +F   FR + MD E++ +P  + Q  E   D+  
Sbjct: 841  FLYGEDGLDGAFIENQRVDVIKCSDEQFRNRFRIDLMDPEKSLSPEILEQATEITGDI-- 898

Query: 930  IKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSD 989
              E++   D E ++L+ DR  L +  A   +    LP+N++R++ +A+ TF++     SD
Sbjct: 899  --EVQRYLDEEWEQLQKDRVFLRSA-AKEDEEMMQLPINVQRILESAKTTFRIREGTISD 955

Query: 990  MHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTRE 1049
            +HP EV+  V  L ERL VV G+D +S EAQ+NATL F   LRS  A KR++ E+ L + 
Sbjct: 956  LHPAEVIPQVQALLERLVVVRGDDIISKEAQENATLLFKAQLRSRLAFKRLVVEYSLNKL 1015

Query: 1050 AFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPR 1109
            AF+ V+G IESRF ++   PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPR
Sbjct: 1016 AFQHVLGAIESRFAKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPR 1075

Query: 1110 LREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMG 1169
            L+EI+NVA  IKTPS++V+  P     KE AK ++  +E+T+LRSVTEATE++YDPD   
Sbjct: 1076 LKEILNVATNIKTPSMTVYQDPSRAMDKESAKQLRSIVEHTSLRSVTEATEIYYDPDIQS 1135

Query: 1170 TIIEEDVEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEF 1227
            T+IE D++ V+SY+ +P ED+  +  + S WLLRI L+R  ++DK L++  VA KI + +
Sbjct: 1136 TVIENDLDMVESYFIIP-EDVMDDSSRQSKWLLRIILSRPKLLDKGLTVQDVAMKIKESY 1194

Query: 1228 DDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVN 1287
              D+  IF+D+NAD+ ++RIR + D  PK + +D+  E DV LKK+ES++L  + LRGV 
Sbjct: 1195 PSDIAVIFSDNNADEQVIRIRQIQD--PKQDEDDDDTEYDVTLKKLESHLLDTLTLRGVA 1252

Query: 1288 -----------------------------------------LLAVMCHEDVDARRTTSNH 1306
                                                     L  V+    VD+ RT SN 
Sbjct: 1253 GVERAFINEKSRVRQVEDGSLYKSAEDPQCKEWVLETSGSALGDVLALPGVDSTRTYSNQ 1312

Query: 1307 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1366
             IEI+EV GIEA R ALL EL  V++FDGSYVN+RHLA+LCD MT RG LMA+TRHGINR
Sbjct: 1313 FIEILEVFGIEATRTALLRELTQVLAFDGSYVNHRHLALLCDVMTSRGFLMAVTRHGINR 1372

Query: 1367 NDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEML- 1425
             DTG +MRCSFEETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+  +YL+  ML 
Sbjct: 1373 ADTGALMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQTMLM 1432

Query: 1426 ----KNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQF 1481
                 NA  + + +  +GL      A    SG+P  + M    Y+ SP+       D+QF
Sbjct: 1433 GVVSNNAGLVTMGNVDKGL-ISDGAATQYDSGSPMQENM----YISSPD------PDSQF 1481

Query: 1482 SPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSP-GYSPTSPTY 1540
            SP     + +P     Y P  PG+   SP     SPG      GYSPTSP   SPTSP Y
Sbjct: 1482 SPIGQTGSETPAGFTEYQP--PGFGGFSPA-GARSPG-----GGYSPTSPFNTSPTSPGY 1533

Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSY 1596
            SPSS GYSPTSP    TSP +  TSP +SP SPS++PTSP+YSPTSP Y    SPTSPSY
Sbjct: 1534 SPSS-GYSPTSPGMGITSPRFM-TSPGFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1591

Query: 1597 SPTSPSY---------------------SPTSPAYSPTSPAYSPTSPAY-SPTSPSYSPT 1634
            SPTSP +                     SPTSP+YSPTSPA    +  + SPT    SPT
Sbjct: 1592 SPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGVTGRHLSPT----SPT 1647

Query: 1635 SPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
            SP Y+PTSP +SPTSP +YSPTSP++     A SPTSPG+S   P YSPTSPTY+P    
Sbjct: 1648 SPKYTPTSPGWSPTSPDAYSPTSPNF-----AGSPTSPGWSLLPPGYSPTSPTYNPNI-- 1700

Query: 1694 YNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSS 1732
                SA    +L  S     L P  PY  T+P Y  T+S
Sbjct: 1701 ----SAPVKLTLGLSDV---LFPIYPYLSTTPKYLCTTS 1732



 Score =  129 bits (325), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/232 (46%), Positives = 135/232 (58%), Gaps = 38/232 (16%)

Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP-AYSPTSPSYSP 1633
            +SP   + S T   ++   P   P    +SP   A SP    YSPTSP   SPTSP YSP
Sbjct: 1481 FSPIGQTGSETPAGFTEYQP---PGFGGFSPAG-ARSPGG-GYSPTSPFNTSPTSPGYSP 1535

Query: 1634 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY----SPTSPTYSP 1689
            +S  YSPTSP    TSP +  TSP +SP SP+++PTSP YSPTSP Y    SPTSP+YSP
Sbjct: 1536 SS-GYSPTSPGMGITSPRFM-TSPGFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSP 1593

Query: 1690 TSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS-----------SSYSPTS 1738
            TSP ++P S  YSP+      +     +  +SPTSP+YSPTS           S  SPTS
Sbjct: 1594 TSPGFSPTSPSYSPTSPSFSPA-----SPAFSPTSPSYSPTSPALGGVTGRHLSPTSPTS 1648

Query: 1739 PSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYS---PSAGYSPSAPGYSPSS 1787
            P Y+P+SP +SP+SP         YSP+SP ++    S G+S   PGYSP+S
Sbjct: 1649 PKYTPTSPGWSPTSP-------DAYSPTSPNFAGSPTSPGWSLLPPGYSPTS 1693



 Score = 82.8 bits (203), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 95/207 (45%), Gaps = 63/207 (30%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP-SYSPTSPTYSP 1689
            +SP   + S T   ++   P   P    +SP   A SP   GYSPTSP + SPTSP YSP
Sbjct: 1481 FSPIGQTGSETPAGFTEYQP---PGFGGFSPAG-ARSPGG-GYSPTSPFNTSPTSPGYSP 1535

Query: 1690 TSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY-------- 1741
            +S               YSP+SP +   SP   TSP +SP S S++PTSP+Y        
Sbjct: 1536 SS--------------GYSPTSPGMGITSPRFMTSPGFSPASPSFAPTSPAYSPTSPGYG 1581

Query: 1742 ---SPSSPTYSPSSP--------------------YNAGGGNPDYSPSSPQYSPSAG--- 1775
               SP+SP+YSP+SP                          +P YSP+SP      G   
Sbjct: 1582 QAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGGVTGRHL 1641

Query: 1776 ---------YSPSAPGYSPSSTSQYTP 1793
                     Y+P++PG+SP+S   Y+P
Sbjct: 1642 SPTSPTSPKYTPTSPGWSPTSPDAYSP 1668


>gi|255719376|ref|XP_002555968.1| KLTH0H02046p [Lachancea thermotolerans]
 gi|238941934|emb|CAR30106.1| KLTH0H02046p [Lachancea thermotolerans CBS 6340]
          Length = 1740

 Score = 1597 bits (4134), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 833/1581 (52%), Positives = 1094/1581 (69%), Gaps = 101/1581 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            FPYS A +  V+ VQFGI SP+E+R +SV +IE  ET +  + + K GGL+DPRLG+IDR
Sbjct: 4    FPYSSAPLRTVKEVQFGIFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSIDR 63

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
              KC+TC   M +CPGHFGH+ELAKP+FHIG++  +  +   VC +C K+L DE     +
Sbjct: 64   NYKCQTCGEGMNDCPGHFGHIELAKPVFHIGYISKIKKVCECVCMHCGKLLLDEHSELMR 123

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEG 182
            QA+KI++PK R   +   CK K  CE     +VP  D +     ++GGCG  QP +  +G
Sbjct: 124  QAIKIKDPKRRFNAVWSLCKAKMVCE----TEVP-SDNDPAQYVSRGGCGNTQPSVRKDG 178

Query: 183  MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
            + ++  +K + K  DD +Q PE    ++ ++A+ VL V K IS ED   LG N  +ARP+
Sbjct: 179  LSLVGTWK-KDKGADDADQ-PE----RRVISADEVLNVFKHISPEDSVRLGFNEDFARPE 232

Query: 243  WMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
            WMIL VLP+PPPPV          R  DDLT++L  I++ N N++R E NG+P H+I E 
Sbjct: 233  WMILTVLPVPPPPVRPSISFNETQRGEDDLTYKLGDILKANINVQRLEINGSPQHVIQES 292

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
              LLQFH+ATY DN++ GQP+A Q+SGRPIKSI +RLK KEGRIRGNLMGKRVDFSARTV
Sbjct: 293  EALLQFHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTV 352

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
            I+ DP +++DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKYIIRD+
Sbjct: 353  ISGDPNLDLDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYIIRDN 409

Query: 413  GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
            G R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTFR
Sbjct: 410  GDRIDLRYSKRAGDIQLQYGWKVERHIIDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFR 469

Query: 473  LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
            LNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP+ IVS QSN+P MGIVQDTL 
Sbjct: 470  LNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPQQIVSAQSNKPCMGIVQDTLC 529

Query: 533  GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
            G RK+T RDTFIE D  +N+L W  D+DG +P P ILKP+PLW+GKQ+ ++ IP  I+L 
Sbjct: 530  GVRKMTLRDTFIELDQVLNMLYWIPDWDGVIPTPIILKPKPLWSGKQILSIAIPSGIHLQ 589

Query: 593  RTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARK 652
            R      D    +L+  D  + I  G+++ G + KKT+G+S+G LIHV+  E GP    +
Sbjct: 590  RF-----DEGTTLLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPKICAR 644

Query: 653  FLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEP 712
               + Q +VN+WLL N FSIGIGDTIAD K+M  I + I  AK  V+ + K+AQ   L  
Sbjct: 645  LFSNLQKVVNFWLLHNGFSIGIGDTIADEKSMREITEAIIVAKRKVEEVTKEAQANLLTA 704

Query: 713  EPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 772
            + G T+ ESFE+ V + LN ARD+AG SA+ +L + NN+K MV+AGSKGSFINI+QM+AC
Sbjct: 705  KHGMTLRESFEDSVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSAC 764

Query: 773  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 832
            VGQQ+VEGKRI FGF DRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGL
Sbjct: 765  VGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGL 824

Query: 833  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLD 892
            IDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLG+VIQF+YGEDGMD+  IE QT+D
Sbjct: 825  IDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQTID 884

Query: 893  SLKMKKSEFDKAFRFEMDEENWNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQKL 944
            ++    + F++ FR ++     NP + L         E I DLK    L+ + D E ++L
Sbjct: 885  TIASSDAAFERRFRIDL----LNPRHALDPSLLESGSEIIGDLK----LQALLDEEFKQL 936

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
              DR +   +I   G+ +WPLPVN++R+I NAQ+TF++D  +P+D+   +VV  V +LQE
Sbjct: 937  VEDR-EFLRKIFVDGEQNWPLPVNIRRIIQNAQQTFRIDQTKPTDLTIRDVVYGVKELQE 995

Query: 1005 RLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
            +L V+ G+  +  EAQ+NA   F  LLRS  A++RV++E+RL ++ FEWV+  +ES+FL+
Sbjct: 996  KLLVLRGKSKILQEAQQNAVTLFCCLLRSRLATRRVIQEYRLNKQTFEWVLSNVESQFLR 1055

Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS 1124
            S+V PGEM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPS
Sbjct: 1056 SIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPS 1115

Query: 1125 LSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
            L+V+L     + +E+AK ++ A+E+TTL+S+T A+E++YDPDP  T+IEED E ++ ++ 
Sbjct: 1116 LTVYLDKDHAADQEKAKLIRSAIEHTTLKSITVASEIYYDPDPRSTVIEEDEEIIQLHFS 1175

Query: 1185 MPDEDI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADK 1242
            + DE+   + +  SPWLLR+EL+R  M DK L+M  V EKI + F +DL  I+++DNA+K
Sbjct: 1176 LMDEETEQSLDYQSPWLLRLELDRAAMNDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEK 1235

Query: 1243 LILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------------ 1284
            LI+R R++ D  PK    +  AE+D  LK+IE+ ML  + LR                  
Sbjct: 1236 LIIRCRVVRD--PKTLDAEAEAEEDHMLKRIENTMLESITLRGVEDITRVVMMKYDRKVP 1293

Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                             GVNL  VMC   VD  R  +N  I+I+ VLGIEA R AL  E+
Sbjct: 1294 SPTGEYHKVPEWVLETDGVNLAEVMCVPGVDPARIYTNSFIDIMNVLGIEAGRAALYKEV 1353

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              VI+ DGSYVNYRH+A+L D MT +G LM++TRHG NR+DTG +MRCSFEETV+IL +A
Sbjct: 1354 YNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRSDTGALMRCSFEETVEILFEA 1413

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPA 1447
               AE D  RGV+EN++LGQ+APIGTG   + +++E L   ++      ME +  G   A
Sbjct: 1414 GAAAELDDCRGVSENVLLGQVAPIGTGAFDVMIDEESL---VKFMPQQKMEEVADGHDGA 1470

Query: 1448 RSPV---SGTPYHDGMMSPGYLFSPNLRLSPVTDAQ---FSPYVG---GMAFSPTSSPGY 1498
            R+P    SG    D  +    +FSP L  S  TDA    F+ Y G   G A SP S  G 
Sbjct: 1471 RTPYNNESGLVNADIDVKDELMFSP-LVDSGSTDAMSGGFTAYGGADYGGASSPFSGYGD 1529

Query: 1499 SPSSPGYSP-SSPGYSPTSPG 1518
            +P+SPG+   +SPG+SPTSP 
Sbjct: 1530 APTSPGFGGVASPGFSPTSPA 1550


>gi|3172134|gb|AAC18416.1| RNA polymerase II largest subunit [Bonnemaisonia hamifera]
          Length = 1732

 Score = 1595 bits (4130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 880/1768 (49%), Positives = 1137/1768 (64%), Gaps = 190/1768 (10%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELAKPMF+IGF+   L I+R VC  CSK+L            KI  P +R+
Sbjct: 1    ECPGHFGHVELAKPMFNIGFINISLKILRCVCHYCSKLLCSSASVAILH--KITKPTDRM 58

Query: 135  KKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRK 194
            +  +                     G + L   +GGCG  QPK + +G ++ A +     
Sbjct: 59   RTAMRFTS-----------------GAKKLCTAEGGCGHMQPKYSRDGFRIRAIF----- 96

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
                ++   E  ERKQT+TAE+   + KRIS+ +C+ +GL+ +++RP+W+IL +LP+PPP
Sbjct: 97   ----EDTAEESAERKQTITAEKSYAIFKRISNSECEAMGLSWRWSRPEWLILTLLPVPPP 152

Query: 255  PVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
             VRPS         DDLT++L  I+++N  LR  E  GA AH I E   L+Q+H+ATY +
Sbjct: 153  QVRPSVMRGGLRNEDDLTNKLGDIVKNNNTLRNLEATGAVAHAIREQIDLVQYHVATYMN 212

Query: 306  NELPGQPRATQRSG-RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            NELPG   AT R G R IKSI  R K KEGR+RGNLMGKRVDFSARTVITPDP + + ++
Sbjct: 213  NELPGIMPATVRGGSRAIKSIGQRFKGKEGRVRGNLMGKRVDFSARTVITPDPNLRLHEV 272

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP+SIA NLTYPE VT YNI+ +++LVE GP   PG   AKYI R+DG +++L Y++  
Sbjct: 273  GVPFSIARNLTYPEIVTSYNIDEMQKLVENGPDEYPG---AKYIEREDGFKVNLAYVRNR 329

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
            S+  LELGYKV RH+ DGD+VLFNRQPSLHKMSIMGHRI+++PYSTFRLNLSVTSPYNAD
Sbjct: 330  SELQLELGYKVIRHIRDGDYVLFNRQPSLHKMSIMGHRIRVLPYSTFRLNLSVTSPYNAD 389

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQ+ +TRAEV ELM+VP CIVSPQ N+PVMGIVQDTLLGC   T+RDTF+
Sbjct: 390  FDGDEMNLHVPQTHQTRAEVQELMLVPHCIVSPQGNKPVMGIVQDTLLGCMLFTQRDTFL 449

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E+D+ MN+LM   D+DG +P+P I KPRPLWTGKQVF+LI+P  +N+ R    H D++K 
Sbjct: 450  ERDLMMNLLMHVGDWDGVIPKPAIYKPRPLWTGKQVFSLILPP-VNIIRFNITHPDDEKT 508

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
             ++ GDT V I +G+L+ G + K+T+G+S   LIH+ W+E GP      +   Q LVN++
Sbjct: 509  DISPGDTKVYISRGQLICGIVDKRTVGSSANGLIHITWKEFGPKITDTLISQIQVLVNHY 568

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            +LQ   SIGIGDTIAD  TM  + DTI  AK  VK L+++AQ+K L   PG+ MMESFE 
Sbjct: 569  ILQRRQSIGIGDTIADDATMRNVIDTIQGAKEEVKLLVRKAQEKELVLLPGKGMMESFET 628

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
            +VN+VLN ARD++G+SAQ+SL +SNN+K MV+AGSKGSFINISQ+ ACVGQQNVEGKRI 
Sbjct: 629  EVNKVLNGARDKSGASAQRSLLKSNNIKRMVSAGSKGSFINISQICACVGQQNVEGKRIA 688

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            +GF  RTLPHF  DD GPESRGFVENSYLRGLTP EFFFHAMGGREGLIDTAVKT+ETGY
Sbjct: 689  YGFHRRTLPHFVLDDLGPESRGFVENSYLRGLTPSEFFFHAMGGREGLIDTAVKTAETGY 748

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF-DK 903
            IQRRL+KAMEDIMV+YDGTVRNS   +++FLYGED MD+ ++E Q + + KM   +  D+
Sbjct: 749  IQRRLIKAMEDIMVRYDGTVRNSCNHIVEFLYGEDSMDATFLEDQVIRTAKMSDKKLRDE 808

Query: 904  AF------RFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATE 954
             F      +F  DE+     +PN +++    D     ELR     E Q++EADR  L   
Sbjct: 809  YFIDPSDPKFGQDEKGRPYLDPN-IVERVRQDAALHVELR----LEFQQIEADRKLLRDY 863

Query: 955  IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV----- 1009
            I  +G+S  PL VN+ R+IWNA++   +     SD+ P +V++ V  L +R +V+     
Sbjct: 864  IIKTGESKRPLAVNVDRVIWNAKQEHNIHADSVSDLKPDQVLKGVSMLLKRTRVLVLGDE 923

Query: 1010 ---------PGE----------------DPLSVEAQKNATLFFNILLRSTFASKRVLKEH 1044
                     PG                 DPL  EAQ+NATL F I +RS  A K++++ H
Sbjct: 924  AALENAALEPGMEEDDEGNPIDEKPTMVDPLMKEAQENATLLFQIHMRSMLACKKLIQLH 983

Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
            RLT +AF W++GE+E+RF+   VAPGE IG +AAQSIGEPATQMTLNTFHYAGVSAKNVT
Sbjct: 984  RLTFKAFLWLLGEVENRFMMCRVAPGENIGAIAAQSIGEPATQMTLNTFHYAGVSAKNVT 1043

Query: 1105 LGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYD 1164
            LGVPRL+EIINV+K  KTPSL+V+LK      KE+AK +Q +L++TTL  VT+ TE++YD
Sbjct: 1044 LGVPRLKEIINVSKNTKTPSLTVYLKSQYAGDKEKAKEIQASLQHTTLHDVTQCTEIYYD 1103

Query: 1165 PDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKIN 1224
            PDPM T+++ D E V S++++ +   AP  +SPWLLRI ++++M+ D+K+SM  +   I 
Sbjct: 1104 PDPMDTVVDADREMVSSFFDLEE---APVGVSPWLLRIIMDKDMLQDRKISMDRIENMIT 1160

Query: 1225 QEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESA----------EDDVFLKKIE 1274
            Q F +D+  I + DN +K+++R+R+  DE+ + +  +E             DD FL+++E
Sbjct: 1161 QNFGNDVHVIRSQDNDEKMVMRLRVA-DESAQEKCGEEGGADIEEDDDEDSDDTFLRRLE 1219

Query: 1275 SNMLTEM------ALR------------------------------GVNLLAVMCHEDVD 1298
            S +L++M      A+R                              GVNLLAVM HE VD
Sbjct: 1220 SELLSQMNLGGIPAIRKVFMRQSRFTFVDPGTGTHKSREEWVLDTDGVNLLAVMSHEAVD 1279

Query: 1299 ARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMA 1358
              RTTSN ++EI EVLGIEAVR  LL+E+R VISFDG+YVNYRHLAIL DTMTYRGHLMA
Sbjct: 1280 HTRTTSNDIVEIFEVLGIEAVREVLLNEIRGVISFDGAYVNYRHLAILVDTMTYRGHLMA 1339

Query: 1359 ITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSL 1418
            ITRHG+NR DTGP+M+CSFE T DILL+AA++ E D LRGVTENIMLGQLAPIGTG   L
Sbjct: 1340 ITRHGVNRVDTGPLMKCSFEGTTDILLEAAMWGERDGLRGVTENIMLGQLAPIGTGSFRL 1399

Query: 1419 YLNDEMLKNAIELQLPSYMEGLEFGMTPAR----------SPVSG--TP----YHDGMMS 1462
             LN++MLK+AIE +       +  G +PA           SP  G  TP      D   +
Sbjct: 1400 LLNEKMLKDAIEPESIDAQASMGLGQSPAGNRTYEGASVWSPARGDATPGRKKAFDARAT 1459

Query: 1463 PGYLFSPNLRLSPV-------TDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1515
            PG L+SP    +P+        D Q SP   G AFSPT      P +PG +    G    
Sbjct: 1460 PGLLYSPAAWGTPLRPRTEQGLDQQMSPSADGAAFSPT------PMTPGGAGGGGGMGGL 1513

Query: 1516 SPGYSPTSPGYSPTSPGYSPTSPTYS----PSSPGYSPTSPAYSPTSPSYSPTSPSYS-P 1570
            +P  SP      P SPG   TSP YS     SSPGY     A SP        + +Y   
Sbjct: 1514 TPLQSPGREYTVPLSPGGGGTSPFYSQSPYASSPGY-----AQSPGRMQSPGGAGAYGIG 1568

Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP-TSPAYSPTSPAYSPTSP 1629
            +S +++P SP+Y PTSP  SP    Y+  SP+ SP    YSP  S      +P   PT+P
Sbjct: 1569 SSGTFAPASPAYRPTSPGPSP----YAAQSPAQSP-GVQYSPDKSRVQVQRAP---PTAP 1620

Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG-----YSPTSPSYSPTS 1684
            S +    S S +  S S      +    +Y   SP YSP+SPG             SP +
Sbjct: 1621 SAAGGGASRSYSPSSPSYNGRGAASPGANYVAASPGYSPSSPGAYSPSSPAAFSPSSPAA 1680

Query: 1685 PTYSPTSPSYNPQSAKYSPSLAYSPSSP 1712
              YSP++P+Y   +A    S A SP  P
Sbjct: 1681 GGYSPSTPAYTANAAANQYSYARSPRYP 1708



 Score = 66.2 bits (160), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 123/297 (41%), Gaps = 49/297 (16%)

Query: 1523 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY-----SP 1577
            SP  + T  G S  SP    ++PG      A +     YSP +   +P  P         
Sbjct: 1426 SPAGNRTYEGASVWSPARGDATPGRKKAFDARATPGLLYSPAAWG-TPLRPRTEQGLDQQ 1484

Query: 1578 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYS----P 1633
             SPS    + S +P +P  +         +P  SP      P SP    TSP YS     
Sbjct: 1485 MSPSADGAAFSPTPMTPGGAGGGGGMGGLTPLQSPGREYTVPLSPGGGGTSPFYSQSPYA 1544

Query: 1634 TSPSY--SPTSPSYSPTSPSYS-PTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
            +SP Y  SP        + +Y   +S +++P SPAY PTSPG SP           Y+  
Sbjct: 1545 SSPGYAQSPGRMQSPGGAGAYGIGSSGTFAPASPAYRPTSPGPSP-----------YAAQ 1593

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSS-PTYS 1749
            SP+        SP + YSP   R+       PT+P+ +   +S S +  S S +     S
Sbjct: 1594 SPA-------QSPGVQYSPDKSRVQ-VQRAPPTAPSAAGGGASRSYSPSSPSYNGRGAAS 1645

Query: 1750 PSSPYNAGGGNPDYSPSSP-------------QYSPSAGYSPSAPGYSP-SSTSQYT 1792
            P + Y A   +P YSPSSP                 + GYSPS P Y+  ++ +QY+
Sbjct: 1646 PGANYVA--ASPGYSPSSPGAYSPSSPAAFSPSSPAAGGYSPSTPAYTANAAANQYS 1700


>gi|410075914|ref|XP_003955539.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
 gi|372462122|emb|CCF56404.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
          Length = 1685

 Score = 1593 bits (4126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 823/1580 (52%), Positives = 1108/1580 (70%), Gaps = 90/1580 (5%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
            YS A +  V+ VQFG+ SP+E+R +SV ++   ET +  + + K GGL+DPRLG+IDR +
Sbjct: 6    YSSAPLRTVKEVQFGLFSPEEVRAISVAKVRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC   M ECPGHFGH++LAKP+FH+GF+  +  +  SVC +C K+L DE + + +Q 
Sbjct: 66   KCQTCQEGMNECPGHFGHIDLAKPVFHVGFISKIKKVCESVCMHCGKLLLDEHNEQMRQV 125

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            LKI++PK R   +   CK K  CE     DVP ++    L  ++GGCG  QP +  +G+K
Sbjct: 126  LKIKDPKKRFNAVWSLCKTKMICE----TDVPSENDPTQLI-SRGGCGNAQPTVRKDGLK 180

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            ++  +K  +  +D +E  PE    ++ L  E +L + K IS ED   LG + ++ARP+WM
Sbjct: 181  LVGSWKKDKATSDGEE--PE----QRVLGVEEILNIFKHISPEDSTKLGFDEEFARPEWM 234

Query: 245  ILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            IL VLP+PPPPV          R  DDLT +LA I++ N +L   E NGAP H I E   
Sbjct: 235  ILTVLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAES 294

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+
Sbjct: 295  LLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS 354

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + +DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD+G 
Sbjct: 355  GDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDNGD 411

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLN
Sbjct: 412  RIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQPSLHKMSMMSHRVKVVPYSTFRLN 471

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G 
Sbjct: 472  LSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGI 531

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            R +T +DTF+E D  +N+L W  D+DG +P P ILKP+PLWTGKQ+ +  IPK I+L R 
Sbjct: 532  RILTLKDTFLEFDHVLNMLYWVPDWDGIIPTPAILKPKPLWTGKQILSAAIPKGIHLQR- 590

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
                 D    +L+  D  + I  G+++ G + KKT+G+S+G LIHV+  E GP    +  
Sbjct: 591  ----FDEGTTLLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQVCSRLF 646

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
            G+ Q +VN+WLL N FS GIGDTIA+ +T++ I +TI++AK  V+ + K+AQ   L  + 
Sbjct: 647  GNIQKVVNFWLLHNGFSTGIGDTIANGETIKEITETIAEAKKKVEEVTKEAQANLLTAKH 706

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G T+ ESFE+ V + LN ARD+AG  A+ +L+++N +K MV+AGSKGSFINI+QM+ACVG
Sbjct: 707  GMTLRESFEDNVVRFLNEARDKAGRLAEVNLNDTNYVKQMVSAGSKGSFINIAQMSACVG 766

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQ+VEGKRI +GFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 767  QQSVEGKRIGYGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLID 826

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLG++IQF+YGEDG+D+  IE Q+LD++
Sbjct: 827  TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFIYGEDGIDASHIEKQSLDTI 886

Query: 895  KMKKSEFDKAFRFEM--DEENWNPNYML--QEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
                + F+K +R ++   E + +P+ +    E   DLK    L+ + D E ++L  DR  
Sbjct: 887  GGSDAAFEKRYRIDLLKVENSLDPSLLESGSEITGDLK----LQVLLDEEYRQLVEDRAF 942

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L  ++ T G+S+WPLPVN++R+I NAQ+TF++D  +PSD+   ++++ V +LQE+L V+ 
Sbjct: 943  L-RKVFTDGESNWPLPVNIRRIIQNAQQTFRIDHSKPSDLTIRDIIKGVRELQEKLLVLR 1001

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G++ +  +AQ++A   F  L+RS  A++RV++E+RLT+E+F+WVI  IES+FL+S+V PG
Sbjct: 1002 GKNEIVQQAQQDAITLFCCLVRSRLATRRVIQEYRLTKESFDWVINNIESQFLRSVVHPG 1061

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L+
Sbjct: 1062 EMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLE 1121

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                + +ERAK ++ A+E+TTL+SVT A+E++YDPDP  T+IE+D E ++ ++ + DE++
Sbjct: 1122 EKYAADQERAKYIRSAIEHTTLKSVTVASEIYYDPDPRSTVIEDDEEIIQLHFSLLDEEM 1181

Query: 1191 AP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
                ++ SPWLLR+EL+R  M DK L+M  V E+I + F  DL  I+++DNA+KLI+R R
Sbjct: 1182 EASLDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKETFKKDLFVIWSEDNAEKLIIRCR 1241

Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------------------ 1284
            ++    PKG   +  AE+D  LKKIE+ ML  + LR                        
Sbjct: 1242 VVR---PKGLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSKTGEF 1298

Query: 1285 -----------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
                       GVNL  VM    VD  R  +N  I+I+EVLGIEA R AL  E+  VI+ 
Sbjct: 1299 QKVPEWVLETDGVNLAEVMTIPGVDTTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIAS 1358

Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
            DGSYVNYRH+A+L D MT +G L ++TRHG NR +TG +MRCSFEETV+IL +A   AE 
Sbjct: 1359 DGSYVNYRHMALLVDVMTCQGGLTSVTRHGFNRANTGALMRCSFEETVEILFEAGASAEL 1418

Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMTPARSPVS 1452
            D  RGV+EN++LGQ+APIGTG   + +++E ++K   E ++    +G E G TP  +  S
Sbjct: 1419 DDCRGVSENVLLGQMAPIGTGAFGVMIDEESLVKYMPEQKITELEDGQEGGATPYATD-S 1477

Query: 1453 GTPYHDGMMSPGYLFSPNLRLSPVTDAQ---FSPYVG---GMAFSPTSSPGYSPSSPGYS 1506
            G    D  +    +FSP L  S  +DA    F+ Y G   G A SP  + G +P+SPG+ 
Sbjct: 1478 GLANTDVDIKDELMFSP-LVDSGASDAMAGGFTAYGGADYGGATSPFGAYGTTPNSPGFG 1536

Query: 1507 P-SSPGYSPTSPGYSPTSPG 1525
              SSPG+SPTSP YSPTSP 
Sbjct: 1537 GVSSPGFSPTSPTYSPTSPA 1556


>gi|171695074|ref|XP_001912461.1| hypothetical protein [Podospora anserina S mat+]
 gi|170947779|emb|CAP59942.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1748

 Score = 1593 bits (4126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 874/1779 (49%), Positives = 1143/1779 (64%), Gaps = 188/1779 (10%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            F +S A +  ++ +QFG+LSPDEI+ MSV  I + ET +  R KP+ GGL+DP LG++DR
Sbjct: 6    FAHSSAPLRTIQEIQFGLLSPDEIKAMSVAHIVYPETMDETRTKPRDGGLNDPLLGSVDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TCT NM+ECPGHFGH+ELA+P++H GF+K    ++  VC NCSK+LAD  D  + 
Sbjct: 66   QFKCKTCTENMSECPGHFGHIELARPVYHPGFIKRTKKLLEIVCHNCSKVLADRSDPAYA 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEE--------PLKKNKGGCGAQ 174
             A+KIR+PK R K++ D CK K  C+     ++  Q  E+        P     GGCG  
Sbjct: 126  AAMKIRDPKTRFKRVWDICKAKRVCD-----NLAPQKPEDGSYDPNAGPADGGHGGCGNT 180

Query: 175  QPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGL 234
            QP +  + + +   Y     K+D+  +  E    K+ LT E  L + +R+S+++   +GL
Sbjct: 181  QPVVRQQALTL---YAMVEHKDDEGVKTKE----KKVLTPEMTLNIFRRMSEDEMVDIGL 233

Query: 235  NPKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQER 281
            N   ARP+WMI+ V             +      +R  DDLT++L  IIR N N+R+   
Sbjct: 234  NISQARPEWMIITVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVRQAIS 293

Query: 282  NGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLM 341
             G+P HII+++  LLQ+H+ATY DN++ GQP+A Q+SGRP+K+I +RLK KEGR+RGNLM
Sbjct: 294  EGSPQHIITDYENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLM 353

Query: 342  GKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPG 401
            GKRVDFSARTVIT D  I++D++GVP SIA  LT+PETVTPYNIE+L   V+ GP+  PG
Sbjct: 354  GKRVDFSARTVITGDANISLDEVGVPRSIARTLTFPETVTPYNIEKLTGYVKNGPNEHPG 413

Query: 402  KTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
               AKY+IR DG R+DLR+ K++    LE G+KVERHL DGDF++FNRQPSLHK S+MGH
Sbjct: 414  ---AKYVIRSDGTRIDLRHHKRAGALQLEYGWKVERHLIDGDFIIFNRQPSLHKESMMGH 470

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
            R+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL MVP  IVSPQ N 
Sbjct: 471  RVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNG 530

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
            P+MGIVQDTL G  K+T+RDTF+ K+  M+++MW  D+DG +P P I KPRP WTGKQ+ 
Sbjct: 531  PLMGIVQDTLAGVYKLTRRDTFLTKEQVMDVMMWVPDWDGVIPLPAIWKPRPRWTGKQII 590

Query: 582  NLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            +++IP  INL    A  AD ++      D  + I++G+L+ G L KK++G + G +IH+ 
Sbjct: 591  SMVIPSIINL----AMGADGEERDAPLKDEGLLIQQGQLIYGLLTKKSVGAAGGGIIHLC 646

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E+GP  A  FL   Q +VNYWLL    SIGIGDTI D KT+E I   I+  K  V  L
Sbjct: 647  YNELGPSGAMDFLNGCQRVVNYWLLHCGHSIGIGDTIPDDKTIELIEKHINDEKAVVAKL 706

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
             K A +  LE  PG  + E+FENKV+  LNTARD+AG+S +KSL + NN   M  +GSKG
Sbjct: 707  TKMATENQLEALPGMNVRETFENKVSAALNTARDKAGTSTEKSLKDLNNAVTMARSGSKG 766

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EF
Sbjct: 767  SSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEF 826

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED    YDGTVRNSLGD+IQF+YGEDG+
Sbjct: 827  FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDAEAHYDGTVRNSLGDIIQFVYGEDGL 886

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAE 940
            D + IE Q +D + +  ++FDK FR + MDE +        EY  ++ +   ++ + D E
Sbjct: 887  DGIAIEKQKVDHMNLNNAKFDKRFRLDVMDETSSAAALDALEYGREMVSDPAVQSLLDEE 946

Query: 941  VQKLEADRYQLATEI--ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
             ++L ADR Q+  EI      D S  LP+N+ R+I  A+K FKVD  + SD+ P +V+ A
Sbjct: 947  YEQLLADRKQV-REINRKKKDDDSMQLPLNIGRIIDTAKKLFKVDSTQRSDLTPKDVIPA 1005

Query: 999  VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            V  L  R+ VV GED LS EA  NAT+ F I +RS  A KR+  E RL + AF+ V+GE+
Sbjct: 1006 VQALLARMVVVRGEDELSREADYNATILFKIQIRSRLAFKRLAVEQRLNKLAFDHVLGEL 1065

Query: 1059 ESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK 1118
            E+R+ +S+V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVAK
Sbjct: 1066 ENRWSRSMVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAK 1125

Query: 1119 KIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEF 1178
             IKTPS+ V+L     +T+E AK+++  +E+T+LRSVT  TE++YDPD   T+I ED + 
Sbjct: 1126 DIKTPSMVVYLDKE-RATQEDAKSMRNLVEHTSLRSVTAMTEIYYDPDITSTVIPEDFDL 1184

Query: 1179 VKSYYEMPD-EDIAP-EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
            V+SY+ +PD  D  P +  S WLLRI L+R+ M+DK L +  VA  I QE+  D+  IF+
Sbjct: 1185 VESYFLIPDTSDSQPIDSQSRWLLRIMLDRQKMLDKGLRVEDVAAAIKQEYKKDVAVIFS 1244

Query: 1237 DDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVN--------- 1287
            D+NA+++++RIR++     K    +   EDDV LK++E ++L    LRGV          
Sbjct: 1245 DNNAEEMVVRIRVIRQNDDKDADGNTIIEDDVMLKRLEKHLLDSCTLRGVEGIERAFLNK 1304

Query: 1288 ---------------------------------LLAVMCHEDVDARRTTSNHLIEIIEVL 1314
                                             L  V+  E VD  RT +N L ++++V 
Sbjct: 1305 TARLLELPDGSQTANKDKEPACEEWYLDTQGTALREVLTVEGVDTTRTYTNDLYQVVDVF 1364

Query: 1315 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
            GIEA R AL+ EL  V++FDGSYVN+RHLA+L D MTYRG + A+TRHGINR DTG +MR
Sbjct: 1365 GIEAARSALMAELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMR 1424

Query: 1375 CSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLP 1434
            CSFEETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG   + L+ +ML+  I     
Sbjct: 1425 CSFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFEVLLDPKMLETVIS---D 1481

Query: 1435 SYMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYL---FSPNLRLSPVTDAQFSPYVGG 1487
            +   GL  GMT   + + G  TPY  G  M   GYL   +SP +         FSP VG 
Sbjct: 1482 NSRMGLMAGMTIKGNQLEGAATPYDTGSPMADNGYLGGSYSPTM-------GNFSPIVGN 1534

Query: 1488 MAFSPTSSPGYSPSSPGYSPSSPGYSP--TSPGYSPTSP-GYSPTSP---GYSPTSPTYS 1541
             +  P   PG++    G    S   +P  TSPG  PTSP   SPTSP   GYSPTSP   
Sbjct: 1535 ESGGP---PGFASEYGGGGYGSSSVNPYATSPG-RPTSPFTTSPTSPFSYGYSPTSP--- 1587

Query: 1542 PSSPGYSPTSPAYSP--------------------------------------------- 1556
              + GYSPTSP                                                 
Sbjct: 1588 --AAGYSPTSPLIDAGGRFASSPQFSPSSPSFSPTSPMLRPGSPTSPSYSPTSPSYSPAS 1645

Query: 1557 --TSPSYSPTSPS----------------YSPTSPSYSPTSPSYSPTSPSYSPTSP-SYS 1597
               +  YSPTSP+                YSP SP++  TSPSYSP SP++SPTSP +YS
Sbjct: 1646 PAATRHYSPTSPAQFQSPTSPSYSPTSPSYSPASPAFQATSPSYSPASPNWSPTSPDAYS 1705

Query: 1598 PTSPSYSPT-SPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
            PTSP++  +     SPTSP YSPTSP++SP +P  +  S
Sbjct: 1706 PTSPTFQRSPGQQMSPTSPGYSPTSPSFSPRTPGRAAGS 1744



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 83/229 (36%), Positives = 106/229 (46%), Gaps = 55/229 (24%)

Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP--TSPSYSPTSP-SYSPTSP- 1643
            SYSPT  ++SP   + S   P ++         S + +P  TSP   PTSP + SPTSP 
Sbjct: 1520 SYSPTMGNFSPIVGNESGGPPGFASEYGGGGYGSSSVNPYATSPG-RPTSPFTTSPTSPF 1578

Query: 1644 --SYSPTSPS--YSPTSP--------------------------SYSPTSPAYSPTSPGY 1673
               YSPTSP+  YSPTSP                             P SP     SP  
Sbjct: 1579 SYGYSPTSPAAGYSPTSPLIDAGGRFASSPQFSPSSPSFSPTSPMLRPGSPTSPSYSPTS 1638

Query: 1674 SPTSPSYSPTSPTYSPTSPS----------YNPQSAKYSPSLAYSPSSPRLSPASP-YSP 1722
               SP+    +  YSPTSP+               +    S A+  +SP  SPASP +SP
Sbjct: 1639 PSYSPASPAATRHYSPTSPAQFQSPTSPSYSPTSPSYSPASPAFQATSPSYSPASPNWSP 1698

Query: 1723 TSPN-YSPTSSSY--------SPTSPSYSPSSPTYSPSSPYNAGGGNPD 1762
            TSP+ YSPTS ++        SPTSP YSP+SP++SP +P  A G   D
Sbjct: 1699 TSPDAYSPTSPTFQRSPGQQMSPTSPGYSPTSPSFSPRTPGRAAGSGGD 1747



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 82/227 (36%), Positives = 105/227 (46%), Gaps = 77/227 (33%)

Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYS----------------------PTSP-AYSPTSP-- 1671
            SYSPT  ++SP   + S   P ++                      PTSP   SPTSP  
Sbjct: 1520 SYSPTMGNFSPIVGNESGGPPGFASEYGGGGYGSSSVNPYATSPGRPTSPFTTSPTSPFS 1579

Query: 1672 -GYSPTSPS--YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP--------- 1719
             GYSPTSP+  YSPTSP        +         S ++SP+SP L P SP         
Sbjct: 1580 YGYSPTSPAAGYSPTSPLID-AGGRFASSPQFSPSSPSFSPTSPMLRPGSPTSPSYSPTS 1638

Query: 1720 -------------YSPTSP----------------NYSPTSSSYSPTSPSYSPSSPTYSP 1750
                         YSPTSP                +YSP S ++  TSPSYSP+SP +SP
Sbjct: 1639 PSYSPASPAATRHYSPTSPAQFQSPTSPSYSPTSPSYSPASPAFQATSPSYSPASPNWSP 1698

Query: 1751 SSPYNAGGGNPDYSPSSP--QYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
            +SP         YSP+SP  Q SP    SP++PGYSP+S S ++P+T
Sbjct: 1699 TSP-------DAYSPTSPTFQRSPGQQMSPTSPGYSPTSPS-FSPRT 1737



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/62 (54%), Positives = 42/62 (67%), Gaps = 9/62 (14%)

Query: 1494 SSPGYSPSSPGYSPSSP-GYSPTSPGY--------SPTSPGYSPTSPGYSPTSPTYSPSS 1544
            +SP YSP+SP +SP+SP  YSPTSP +        SPTSPGYSPTSP +SP +P  +  S
Sbjct: 1685 TSPSYSPASPNWSPTSPDAYSPTSPTFQRSPGQQMSPTSPGYSPTSPSFSPRTPGRAAGS 1744

Query: 1545 PG 1546
             G
Sbjct: 1745 GG 1746



 Score = 50.1 bits (118), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 8/51 (15%)

Query: 1490 FSPTSSPGYSPSSPGY--------SPSSPGYSPTSPGYSPTSPGYSPTSPG 1532
            +SPTS   YSP+SP +        SP+SPGYSPTSP +SP +PG +  S G
Sbjct: 1696 WSPTSPDAYSPTSPTFQRSPGQQMSPTSPGYSPTSPSFSPRTPGRAAGSGG 1746


>gi|367018612|ref|XP_003658591.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
            42464]
 gi|347005858|gb|AEO53346.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
            42464]
          Length = 1754

 Score = 1593 bits (4125), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 875/1781 (49%), Positives = 1151/1781 (64%), Gaps = 198/1781 (11%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            F +S A + +++ +QFG+LSP+EI+ MSV  I + ET +  R KP+ GGL+DP LG++DR
Sbjct: 6    FAHSSAPIREIKEIQFGLLSPEEIKGMSVCHIVYPETMDETRTKPRDGGLNDPLLGSVDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TCT NM ECPGHFGH+ELA+P+FH GF++    ++  VC NCSK+LAD  D ++ 
Sbjct: 66   QFKCKTCTENMTECPGHFGHIELARPVFHPGFIRRTKKLLEMVCHNCSKVLADRSDPQYA 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQ--DGEEPLK-------KNKGGCGA 173
             A++IR+PK R K++ D CK+K +C+     D P Q  DGE  L        +  GGCG 
Sbjct: 126  AAMRIRDPKVRFKRVWDICKSKRRCDN----DPPKQAEDGEYNLNGTGDRPVEGHGGCGN 181

Query: 174  QQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
             QP +  + + +   + +   K++D  +  E    K+ +T E  L + +R+SDE+   +G
Sbjct: 182  IQPVIRQQALTL---WGSIETKDEDGVKTKE----KKIITPEMALNIFRRMSDEEMIDIG 234

Query: 234  LNPKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQE 280
            +N   ARP+WMI+ V             +      +R  DDLT++L  IIR N N+R+  
Sbjct: 235  INISQARPEWMIITVLPVPPPPVRPSISMDGTGTGLRNEDDLTYKLGDIIRANGNVRQAI 294

Query: 281  RNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 340
              G+P HII++F  LLQ+H+ATY DN++ GQP+A Q+SGRP+K+I +RLK KEGR+RGNL
Sbjct: 295  AEGSPQHIITDFENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNL 354

Query: 341  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 400
            MGKRVDFSARTVIT D  I++D++GVP SIA  LTYPETVTPYNI +L +LV+ GP+  P
Sbjct: 355  MGKRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIAKLTKLVQNGPNEHP 414

Query: 401  GKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 460
            G   A++++R DG RLDLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MG
Sbjct: 415  G---ARFVVRSDGTRLDLRHHRRATGIQLEYGWKVERHLMDGDYIIFNRQPSLHKESMMG 471

Query: 461  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
            HR+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL MVP  IVSPQ N
Sbjct: 472  HRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRN 531

Query: 521  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQV 580
             P+MGIVQDTL G  K+ +RD F+ K+  MNI++W  D+DG +P P I KPRP WTGKQ+
Sbjct: 532  GPLMGIVQDTLAGVYKLCRRDVFLTKEEVMNIMLWVPDWDGIIPLPAIHKPRPRWTGKQI 591

Query: 581  FNLIIPKQINLFRTAAW----HADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGS 636
             +LIIP  IN+   +      H   D G+L        I++GEL+ G L KK++G S G 
Sbjct: 592  ISLIIPSIINIHMPSEQQDKDHPFEDDGLL--------IQQGELMFGLLSKKSVGASGGG 643

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            ++H+ + E+GP  A  FL   Q +VNYWLL N FSIGIGDTI D  T+  I   I+  K 
Sbjct: 644  IVHLCYNELGPQGAMDFLNGCQRVVNYWLLHNGFSIGIGDTIPDEVTIGLIQKHINDEKA 703

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
             V  L +QA +  LEP PG  + E+FENKV+  LN ARD+AG+S QKSL + NN   M  
Sbjct: 704  EVARLTQQATNNELEPLPGMNIRETFENKVSTALNKARDKAGTSTQKSLKDLNNAVIMAR 763

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
            +GSKGS INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGL
Sbjct: 764  SGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGL 823

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
            TP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED   +YDGTVRNSLGD+IQF+Y
Sbjct: 824  TPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDAEARYDGTVRNSLGDIIQFVY 883

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELRD 935
            GEDG+D + IE Q +D + +    F+K FR + MDE   +      EY  ++ +   +++
Sbjct: 884  GEDGLDGLAIERQRVDHMNLSNKNFEKRFRLDVMDEAASSSILDSLEYGREMASDPAVQE 943

Query: 936  VFDAEVQKLEADRYQLATEIATS--GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPM 993
            + D E ++L ADR +L  +I      D    LP+N+ R+I  A+K FKVD  + SD+ P 
Sbjct: 944  LLDQEYEQLLADR-ELVRQINRRKMADDYMQLPLNVARIIETAKKLFKVDDSQRSDLTPN 1002

Query: 994  EVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEW 1053
            +V+ AV  L +R+ VV G+D +S EA  N+TL F I LRS  A KR+  E R+ + AFE 
Sbjct: 1003 DVIPAVRALLDRMVVVRGDDIISKEADYNSTLLFKIQLRSRLAYKRLAVEQRINKLAFEH 1062

Query: 1054 VIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREI 1113
            ++GE+E+R+ +S+VAPGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI
Sbjct: 1063 ILGELENRWARSMVAPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEI 1122

Query: 1114 INVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIE 1173
            +NVAK IKTPS+ V+L    N+T+E AK ++ A+E+T+LRSVT  TE++YDPD   T+I 
Sbjct: 1123 LNVAKDIKTPSMVVYLDYA-NATQEDAKRMRSAVEHTSLRSVTAVTEIYYDPDITSTVIP 1181

Query: 1174 EDVEFVKSYYEMPD--EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDL 1231
            ED + V+SY+ +PD  +  + E  S WLLR+ L+R+ M+DK L +  VA +I +E+  D+
Sbjct: 1182 EDYDMVESYFLIPDSSDQDSIENQSRWLLRLTLDRQKMLDKGLRVEDVAARIKEEYKKDV 1241

Query: 1232 TCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV----- 1286
              IF+D+NA+++++RIR++  +  K E  ++  EDDV LK++E ++L    LRGV     
Sbjct: 1242 AVIFSDNNAEEMVIRIRVIRQDDDKDEDGNKIIEDDVMLKRLEKHLLDNCTLRGVPGIER 1301

Query: 1287 ------------------------------------NLLAVMCHEDVDARRTTSNHLIEI 1310
                                                +L  V+  E VD RRT +N L +I
Sbjct: 1302 AFLNKGVKLAVLPDGSQVANKETPECMEWYLDTQGTSLREVLTIEGVDTRRTYTNDLYQI 1361

Query: 1311 IEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG 1370
            ++V GIEA R AL+ EL  V++F GSYVN+RHLA+L D MTYRG + A+TRHGINR DTG
Sbjct: 1362 VDVFGIEAARAALMQELTQVLAFGGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTG 1421

Query: 1371 PMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIE 1430
             +MRCSFEETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG   + L+ +ML+  I 
Sbjct: 1422 ALMRCSFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFDVLLDPKMLETVIS 1481

Query: 1431 LQLPSYMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYL--FSPNLRLSPVTDAQFSPY 1484
                +   GL  GMT     + G  TPY  G  M   GYL  FSP +         FSP 
Sbjct: 1482 ---DNSRMGLMPGMTIKGGQLEGAATPYDTGSPMADNGYLGSFSPTM-------GNFSPI 1531

Query: 1485 VGGMAFSPTSSPG--------------YSPSSPGYSPSSP--------------GYSPTS 1516
             G  + SP+                  Y+ S    SP S               GYSPTS
Sbjct: 1532 QGAGSDSPSGFGTEYGGGFGGSSSANPYATSPRATSPFSTSPTSPFSYSPSSPLGYSPTS 1591

Query: 1517 PGYSPTS-----------------------PGYSPTSPGYSPTSPTYSPSSPG----YSP 1549
            P                             PG SPTSP YSPTSP+YSP+SP     YSP
Sbjct: 1592 PLLDAGGRYASSPQFSPSSPSFSPTSPMLRPG-SPTSPNYSPTSPSYSPASPAATRHYSP 1650

Query: 1550 TSPA-----------------------YSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT 1585
            TSPA                          TSPSYSP SP++SPTSP +YSPTSPS+  +
Sbjct: 1651 TSPAQFNSPTSPSYSPTSPSYSPASPNLHSTSPSYSPASPTWSPTSPDAYSPTSPSFHRS 1710

Query: 1586 -SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA---YSPTSP 1622
                 SPTSP YSPTSPS+SP +P   P+  +   YSPTSP
Sbjct: 1711 PGQQMSPTSPGYSPTSPSFSPRTPGRGPSGGSGDQYSPTSP 1751



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/232 (36%), Positives = 99/232 (42%), Gaps = 107/232 (46%)

Query: 1588 SYSPTSPSYSPT------SPS------------------YSPTSPAYSPTSP-------- 1615
            S+SPT  ++SP       SPS                  Y+ +  A SP S         
Sbjct: 1520 SFSPTMGNFSPIQGAGSDSPSGFGTEYGGGFGGSSSANPYATSPRATSPFSTSPTSPFSY 1579

Query: 1616 ------AYSPTSPAY-----------------------------SPTSPSYSPTSPSYSP 1640
                   YSPTSP                               SPTSP+YSPTSPSYSP
Sbjct: 1580 SPSSPLGYSPTSPLLDAGGRYASSPQFSPSSPSFSPTSPMLRPGSPTSPNYSPTSPSYSP 1639

Query: 1641 TSPS----YSPTSPS-----------------------YSPTSPSYSPTSPAYSPTSP-G 1672
             SP+    YSPTSP+                          TSPSYSP SP +SPTSP  
Sbjct: 1640 ASPAATRHYSPTSPAQFNSPTSPSYSPTSPSYSPASPNLHSTSPSYSPASPTWSPTSPDA 1699

Query: 1673 YSPTSPSY--------SPTSPTYSPTSPSYNPQSAKYSPSLA----YSPSSP 1712
            YSPTSPS+        SPTSP YSPTSPS++P++    PS      YSP+SP
Sbjct: 1700 YSPTSPSFHRSPGQQMSPTSPGYSPTSPSFSPRTPGRGPSGGSGDQYSPTSP 1751



 Score = 84.0 bits (206), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 113/233 (48%), Gaps = 32/233 (13%)

Query: 1567 SYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-AYSPTSPAYSPTSPA 1623
            S+SPT  ++SP   + S SP+             +S +   TSP A SP S + +     
Sbjct: 1520 SFSPTMGNFSPIQGAGSDSPSGFGTEYGGGFGGSSSANPYATSPRATSPFSTSPTSPFSY 1579

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY--SPTSPGYSPTSPSYS 1681
               +   YSPTSP        Y+ +      +      +      SPTSP YSPTSPSYS
Sbjct: 1580 SPSSPLGYSPTSPLLD-AGGRYASSPQFSPSSPSFSPTSPMLRPGSPTSPNYSPTSPSYS 1638

Query: 1682 PTSPT----YSPTSPS-YNPQSAK----------------YSPSLAYSPSSPRLSPASP- 1719
            P SP     YSPTSP+ +N  ++                 +S S +YSP+SP  SP SP 
Sbjct: 1639 PASPAATRHYSPTSPAQFNSPTSPSYSPTSPSYSPASPNLHSTSPSYSPASPTWSPTSPD 1698

Query: 1720 -YSPTSPNYSPT-SSSYSPTSPSYSPSSPTYSPSSPYNAGGGNP--DYSPSSP 1768
             YSPTSP++  +     SPTSP YSP+SP++SP +P     G     YSP+SP
Sbjct: 1699 AYSPTSPSFHRSPGQQMSPTSPGYSPTSPSFSPRTPGRGPSGGSGDQYSPTSP 1751



 Score = 78.6 bits (192), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 96/249 (38%), Positives = 125/249 (50%), Gaps = 37/249 (14%)

Query: 1574 SYSPTSPSYSPT--SPSYSPTSPSYSPTSPSYSPTSPAYSPTSP-AYSPTSPAYSPTSPS 1630
            S+SPT  ++SP   + S SP+             +S     TSP A SP S + +     
Sbjct: 1520 SFSPTMGNFSPIQGAGSDSPSGFGTEYGGGFGGSSSANPYATSPRATSPFSTSPTSPFSY 1579

Query: 1631 YSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS 1688
               +   YSPTSP         S    SPS    SP      PG SPTSP+YSPTSP+YS
Sbjct: 1580 SPSSPLGYSPTSPLLDAGGRYASSPQFSPSSPSFSPTSPMLRPG-SPTSPNYSPTSPSYS 1638

Query: 1689 PTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTY 1748
            P SP+    +  YSP+   SP+      +  YSPTSP+YSP S +   TSPSYSP+SPT+
Sbjct: 1639 PASPA---ATRHYSPT---SPAQFNSPTSPSYSPTSPSYSPASPNLHSTSPSYSPASPTW 1692

Query: 1749 SPSSPYNAGGGNPDYSPSSPQY--SPSAGYSPSAPGYSPSSTS----------------Q 1790
            SP+SP         YSP+SP +  SP    SP++PGYSP+S S                Q
Sbjct: 1693 SPTSP-------DAYSPTSPSFHRSPGQQMSPTSPGYSPTSPSFSPRTPGRGPSGGSGDQ 1745

Query: 1791 YTPQTNRDD 1799
            Y+P +  +D
Sbjct: 1746 YSPTSPTND 1754


>gi|336463398|gb|EGO51638.1| DNA-directed RNA polymerase II largest subunit [Neurospora
            tetrasperma FGSC 2508]
 gi|350297387|gb|EGZ78364.1| DNA-directed RNA polymerase II largest subunit [Neurospora
            tetrasperma FGSC 2509]
          Length = 1761

 Score = 1592 bits (4123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 885/1786 (49%), Positives = 1189/1786 (66%), Gaps = 136/1786 (7%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            F +S A +  ++ +QFG+LSP+EI+ MSV  I + ET +  R KP+ GGL+DP LG++DR
Sbjct: 6    FAHSSAPLRTIKEIQFGLLSPEEIKGMSVAHIVYPETMDETRTKPRDGGLNDPLLGSVDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TC  NM+ECPGHFGH+ELA+P++H GF+K V  ++  VC NCSK+LAD +D +F 
Sbjct: 66   QFKCKTCGENMSECPGHFGHIELARPVYHPGFIKRVKKMLEIVCHNCSKVLADRNDKEFA 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKKNKG------GCGAQQ 175
             A++IR+PK R  ++   CK K +CE  +E+     D E  PL   KG      GCG   
Sbjct: 126  AAMRIRDPKVRFNRVWAVCKKKRRCE--NEVVKKSDDDEFNPLADAKGELPGHGGCGNDH 183

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P +  + + + A++  +     D+E +    + K+ +T +  L +L  +++ D   +G+N
Sbjct: 184  PTVRQQALTLYAQFDTK-----DEEGVKS--KEKKIITPDMALNILHNMTESDMIDIGIN 236

Query: 236  PKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERN 282
               ARP+WMI+ V             +      +R  DDLT++L  IIR N N+R+  + 
Sbjct: 237  ISQARPEWMIITVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVRQAIQE 296

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+PAHII++F  LLQ+H+ATY DN++ GQP+A Q+SGRP+K+I +RLK KEGR+RGNLMG
Sbjct: 297  GSPAHIINDFENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMG 356

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT D  I++D++GVP SIA  LTYPETVTPYNI +L + V+ GP+  PG 
Sbjct: 357  KRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIGKLTQYVQNGPNEHPG- 415

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              AKY+IR DG R+DLR+ +++    LE G+KVERHL DGD+++FNRQPSLHK S+MGHR
Sbjct: 416  --AKYVIRSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHR 473

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL MVP  IVSPQ N P
Sbjct: 474  VKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNGP 533

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            +MGIVQDTL G  K+ +RD F+ K+  MNI++W  ++DG +P P ILKPRP WTGKQ+ +
Sbjct: 534  LMGIVQDTLAGAYKLCRRDVFLTKEEVMNIMLWVPEWDGIIPVPAILKPRPRWTGKQIIS 593

Query: 583  LIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            +++PK INL      + D D G     D  + I++GE++ G + KK +G ++G ++H+ +
Sbjct: 594  MVVPKIINL-----KNIDEDDGECPLKDKGILIQQGEVIFGLMTKKIVGAASGGIVHLCY 648

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E+GP  A  FL   Q +VNYWLL N  SIGIGDTI DA T+  +   I  AK  VK L 
Sbjct: 649  NELGPSGAMDFLNGCQRVVNYWLLHNGHSIGIGDTIPDAATIAKVQTHIDDAKAEVKQLT 708

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
              A +  LEP PG  + E+FENKV++ LNTARD+AG+S + SL + NN   M  +GSKGS
Sbjct: 709  DMATNNQLEPLPGMNIRETFENKVSKALNTARDKAGTSTESSLKDINNAVTMALSGSKGS 768

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
             INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFF
Sbjct: 769  SINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFF 828

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED   +YDGTVRNSLGD+IQF+YGEDG+D
Sbjct: 829  FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDSAAQYDGTVRNSLGDIIQFVYGEDGLD 888

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
             + IE+Q +D   +    FDK +R + MDEE  +      EY  +L +   ++++ D E 
Sbjct: 889  GIAIENQPVDHFTISNKAFDKRYRLDVMDEEVSSSELEALEYGKELASDPTVQELLDQEY 948

Query: 942  QKLEADRYQLATEIATSG--DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
            ++L  DR+ L     T G  D+   LP+N+ R+I  A+K FKVD    SD+ P +V+  V
Sbjct: 949  EQLSVDRHMLREIQRTKGNNDTKMQLPLNIIRIIDTAKKLFKVDETARSDLTPKDVIPTV 1008

Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
              + +R+ VV G+DP+S EA  NAT+ F   LRS  A KR+  + R+ + AF  ++GE+E
Sbjct: 1009 KAMLDRMIVVRGDDPISKEADYNATILFKAQLRSRLAFKRLAVQDRINKLAFNHILGELE 1068

Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
            +R+ +S+V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA  
Sbjct: 1069 NRWSRSMVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVASN 1128

Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
            IKTPS+ V+L     +T+E AK ++ A+E+T+LRSVT  TE++YDPD   T I ED + V
Sbjct: 1129 IKTPSMMVYLDSKA-ATQEEAKKMRSAVEHTSLRSVTAVTEIYYDPDITSTNIPEDYDLV 1187

Query: 1180 KSYYEMPDEDIAP----EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIF 1235
            +SY+ +PD+        E  S WLLRI L+R+ M+DK L +  VA +I + +  D+  +F
Sbjct: 1188 ESYFLIPDQSGDEPDPIENQSRWLLRITLDRQKMLDKGLRVEDVAHRIKEVYKKDVAVVF 1247

Query: 1236 NDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------- 1286
            +D+NA+++++RIR++  +  K E  ++  EDDV LK++E ++L    LRGV         
Sbjct: 1248 SDNNAEEMVIRIRVIKADDDKDEDGNKIIEDDVMLKRLEKHLLDGCTLRGVEGIERAFLN 1307

Query: 1287 --------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVL 1314
                                            +L  V+  E VD +RTT+N L ++++V 
Sbjct: 1308 KGVKLIEAKDGSMKHSKVDDECQEWYLDTQGTSLREVLTVEGVDTKRTTTNDLWQVVDVF 1367

Query: 1315 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
            GIE  R AL+ EL  V++FDGSYVN+RHLA+LCD MTYRG + A+TRHGINR DTG +MR
Sbjct: 1368 GIEGARAALMHELTAVLAFDGSYVNHRHLALLCDVMTYRGSIAAVTRHGINRADTGALMR 1427

Query: 1375 CSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLP 1434
            CSFEETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG   ++L+ +ML+  I     
Sbjct: 1428 CSFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGAFDVFLDPKMLETVIS---D 1484

Query: 1435 SYMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYL--FSPNLRLSPVTDAQFSPYVGGM 1488
            +   GL  GMT   S + G  TPY  G  M   G+L  +SP +         FSP  G  
Sbjct: 1485 NSRMGLMPGMTVKGSQLDGAATPYDTGSPMADSGFLGSYSPTM-------GNFSPIQGAG 1537

Query: 1489 AFSPTSSPGYSPSSPGY----------SPSSPGYSPTSPGYSPTSP----GYSPTSPGYS 1534
            + SPT++ G+     G           S +SP    TSP ++PTSP    GYSP+SP   
Sbjct: 1538 SDSPTNN-GFGTDYGGVGGYGSGTSYSSATSP--RATSP-FTPTSPFSYGGYSPSSPAAG 1593

Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSP------TSPSYSPTSPSYSPTSPS 1588
             +  +    S G   +SP +SP+SPS+SPTSP   P      +    SP+    SP +  
Sbjct: 1594 YSPSSPLLDSSGRFASSPQFSPSSPSFSPTSPMLRPGSPTSPSYSPTSPSYSPASPAAAR 1653

Query: 1589 YSPTSPS--YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP-SYSPTSPSY 1645
            YSPTSP+  +SPTSPSYSPTSP+YSP SPA+  TSP+YSP SP++SPTSP +YSPTSPS+
Sbjct: 1654 YSPTSPAQQFSPTSPSYSPTSPSYSPASPAFQATSPSYSPASPTWSPTSPDAYSPTSPSF 1713

Query: 1646 SPT-SPSYSPTSPS-YSPTSPAYSPTSPGYSPTSPS---YSPTSPT 1686
              +     SPTSP+ YSPTSP YSP +PG + +  +   YSPTSP+
Sbjct: 1714 QRSPGQQLSPTSPTGYSPTSPQYSPRTPGRNNSGGNGDQYSPTSPS 1759



 Score = 62.0 bits (149), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 87/237 (36%), Positives = 115/237 (48%), Gaps = 56/237 (23%)

Query: 1588 SYSPTSPSYSPT--SPSYSPTSPAYSPTSPAYSPT------SPAYSPTSPS-YSPTSP-- 1636
            SYSPT  ++SP   + S SPT+  +                S A SP + S ++PTSP  
Sbjct: 1522 SYSPTMGNFSPIQGAGSDSPTNNGFGTDYGGVGGYGSGTSYSSATSPRATSPFTPTSPFS 1581

Query: 1637 --SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP------------ 1682
               YSP+SP+   +  S    S     +SP +SP+SP +SPTSP   P            
Sbjct: 1582 YGGYSPSSPAAGYSPSSPLLDSSGRFASSPQFSPSSPSFSPTSPMLRPGSPTSPSYSPTS 1641

Query: 1683 --------TSPTYSPTSPSYN----------PQSAKYSPSLAYSPSSPRLSPASP-YSPT 1723
                     +  YSPTSP+               +    S A+  +SP  SPASP +SPT
Sbjct: 1642 PSYSPASPAAARYSPTSPAQQFSPTSPSYSPTSPSYSPASPAFQATSPSYSPASPTWSPT 1701

Query: 1724 SPN-YSPTSSSY--------SPTSPS-YSPSSPTYSPSSP--YNAGGGNPDYSPSSP 1768
            SP+ YSPTS S+        SPTSP+ YSP+SP YSP +P   N+GG    YSP+SP
Sbjct: 1702 SPDAYSPTSPSFQRSPGQQLSPTSPTGYSPTSPQYSPRTPGRNNSGGNGDQYSPTSP 1758



 Score = 57.8 bits (138), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 91/271 (33%), Positives = 130/271 (47%), Gaps = 24/271 (8%)

Query: 1531 PGYSPTSPTYSPSSPGYSPTSP-AYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYSPTSP 1587
            PG +        ++  Y   SP A S    SYSPT  ++SP   + S SPT+  +     
Sbjct: 1492 PGMTVKGSQLDGAATPYDTGSPMADSGFLGSYSPTMGNFSPIQGAGSDSPTNNGFGTDYG 1551

Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSP----AYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
                     S +S +    +  ++PTSP     YSP+SPA   +  S    S     +SP
Sbjct: 1552 GVGGYGSGTSYSSATSPRATSPFTPTSPFSYGGYSPSSPAAGYSPSSPLLDSSGRFASSP 1611

Query: 1644 SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP 1703
             +SP+SPS+SPTSP   P     SP+    SP+    SP +  YSPTSP+   Q    + 
Sbjct: 1612 QFSPSSPSFSPTSPMLRP-GSPTSPSYSPTSPSYSPASPAAARYSPTSPA---QQFSPTS 1667

Query: 1704 SLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP-SYSPSSPTY--------SPSSPY 1754
                  S      +  +  TSP+YSP S ++SPTSP +YSP+SP++        SP+SP 
Sbjct: 1668 PSYSPTSPSYSPASPAFQATSPSYSPASPTWSPTSPDAYSPTSPSFQRSPGQQLSPTSPT 1727

Query: 1755 NAGGGNPDYSPSSPQYSPSAG----YSPSAP 1781
                 +P YSP +P  + S G    YSP++P
Sbjct: 1728 GYSPTSPQYSPRTPGRNNSGGNGDQYSPTSP 1758


>gi|363755924|ref|XP_003648178.1| hypothetical protein Ecym_8065 [Eremothecium cymbalariae DBVPG#7215]
 gi|356891378|gb|AET41361.1| Hypothetical protein Ecym_8065 [Eremothecium cymbalariae DBVPG#7215]
          Length = 1743

 Score = 1592 bits (4122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 830/1580 (52%), Positives = 1094/1580 (69%), Gaps = 99/1580 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            FPYS A +  ++ VQFG+ SP+E+R +SV +IE  ET +  + + K GGL+DPRLG+IDR
Sbjct: 4    FPYSSAPLRTIKEVQFGLFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSIDR 63

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
              KC+TC   M +CPGHFGH+ELAKP+FHIGF+  +  +   VC +C K+L DE +   +
Sbjct: 64   NYKCQTCGEGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEYNELMR 123

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK-NKGGCGAQQPKLTIE 181
            QA+KI++PK R   +   CK+K  C+     +VP +D  +P K  ++GGCG  QP +  +
Sbjct: 124  QAIKIKDPKRRFNAVWSLCKSKMVCD----TEVPSED--DPSKYISRGGCGNAQPSIRKD 177

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
            G+ ++  +K  + KN +    PE    K+ L+AE +L V K I+ ED   LG N  +ARP
Sbjct: 178  GLSLVGTWK--KDKNSEDSDQPE----KRILSAEEILNVFKHITPEDSLRLGFNEDFARP 231

Query: 242  DWMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            +WMIL VLP+PPPPV          R  DDLT++L  I++ N N++R E NG+P H+I E
Sbjct: 232  EWMILTVLPVPPPPVRPSISFNESQRGEDDLTYKLGDILKANINVQRLEINGSPQHVIQE 291

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
               LLQFH+ATY DN++ GQP+A Q+SGRPIKSI +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 292  SESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSART 351

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VI+ DP +++DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD
Sbjct: 352  VISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRD 408

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTF
Sbjct: 409  NGDRIDLRYSKRAGDIQLQYGWKVERHIIDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTF 468

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            RLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP+ IVSPQSN+P MGIVQDTL
Sbjct: 469  RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPQQIVSPQSNKPCMGIVQDTL 528

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
             G RK+T RDTFIE D  +N+L W  D+DG +P+PTILKP+PLW+GKQ+ ++ IP  I+L
Sbjct: 529  CGIRKMTLRDTFIELDQVLNMLYWIPDWDGVIPKPTILKPKPLWSGKQLLSMAIPNGIHL 588

Query: 592  FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 651
             R      D     L+  D  + I  G+++ G + KKT+G+S+G LIHV+  E GP    
Sbjct: 589  QR-----FDEGTTYLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQVCA 643

Query: 652  KFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711
            K  G+ Q +VNYWLL N FSIGIGDTIAD KTM  I + I+ AK  V+ + K+AQ   L 
Sbjct: 644  KLFGNIQKVVNYWLLHNGFSIGIGDTIADEKTMREITEAIALAKKRVQEVTKEAQANLLT 703

Query: 712  PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 771
             + G T+ ESFE+ V + LN ARD+AG SA+ +L + NN+K MV+AGSKGSFINI+QM+A
Sbjct: 704  AKHGMTLRESFEDNVVRFLNEARDKAGRSAELNLRDLNNVKQMVSAGSKGSFINIAQMSA 763

Query: 772  CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 831
            CVGQQ+VEGKRI FGF DRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREG
Sbjct: 764  CVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREG 823

Query: 832  LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL 891
            LIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLG++IQF+YGEDGMD+  IE Q++
Sbjct: 824  LIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMDASHIEKQSI 883

Query: 892  DSLKMKKSEFDKAFRFEMDEENWNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQK 943
            D++      F+K +R ++     NP Y L         E + DLK    L+++ D E ++
Sbjct: 884  DTIPGSDLAFEKRYRIDL----LNPEYGLDPSLLESATEIMGDLK----LQNMLDEEYKQ 935

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            L  DR QL   +   G+ +WPLPVN++R+I NAQ+TF++D  +P+D+   +VV  V KLQ
Sbjct: 936  LVQDR-QLLRSVFLDGEHNWPLPVNIRRIIQNAQQTFRIDTTKPTDLTIKDVVLGVRKLQ 994

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
            + L V+ G   +  EAQ+NA   F  L+RS  A++RVL E+RLT++ F+WV+  IE++FL
Sbjct: 995  DNLLVLRGSSNILKEAQENAVTLFCSLVRSRLATRRVLTEYRLTKQTFQWVLNNIEAQFL 1054

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            +S+V PGEM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTP
Sbjct: 1055 RSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTP 1114

Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
            SL+V+L     + +E+AK ++ A+E+TTL+SVT ++E++YDPDP  T+IEED E ++ ++
Sbjct: 1115 SLTVYLNEDYAADQEKAKLIRSAIEHTTLKSVTVSSEIYYDPDPSSTVIEEDEEIIQLHF 1174

Query: 1184 EMPDEDI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
             + DE+   + +  SPWLLR+EL+R  M DK L+M  V EKI + F +DL  I+++DNA+
Sbjct: 1175 SLMDEETENSLKHQSPWLLRLELDRAAMNDKDLTMGQVGEKIKETFKNDLFVIWSEDNAE 1234

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR----------------- 1284
             LI+R R++ D  PK    +  AE+D  LKKIE+ ML  + LR                 
Sbjct: 1235 NLIIRCRVVRD--PKTLDAEAEAEEDHMLKKIENTMLESITLRGVQDITRVVMMKYDRKV 1292

Query: 1285 ------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDE 1326
                              GVNL  VM    VD  R  +N  I+I+ VLGIEA R AL  E
Sbjct: 1293 PNETGEYHKVPEWVLETDGVNLSEVMTVPGVDPTRIYTNSFIDIMNVLGIEAGRAALYRE 1352

Query: 1327 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1386
            +  VI+ DGSYVNYRH+A+L D MT +G LM++TRHG NR DTG +MRCSFEETV+IL +
Sbjct: 1353 VYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFE 1412

Query: 1387 AAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMT 1445
            A   AE D   GV+EN++LGQ+APIGTG   + ++DE ++K   E +L + ++G + G T
Sbjct: 1413 AGASAELDDCNGVSENVILGQMAPIGTGAFDVMIDDESLIKYMPEQKLTTAIDGKDGGST 1472

Query: 1446 PARSPVSGTPYHDGMMSPGYLFSPNLRL--SPVTDAQFSPYVGGMAFSPTSSP----GYS 1499
            P  S  SG       +    +FSP +    S      F+ Y GG  +  T+SP    G  
Sbjct: 1473 PYNSD-SGLVNTQVDIKDELMFSPLVEAGGSDAMSGGFTAY-GGAEYGNTTSPFGGYGNG 1530

Query: 1500 PSSPGYS-PSSPGYSPTSPG 1518
            P+SPG+   SSPG+S TSP 
Sbjct: 1531 PTSPGFGDASSPGFSLTSPA 1550


>gi|406603917|emb|CCH44586.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
          Length = 1688

 Score = 1592 bits (4121), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 821/1546 (53%), Positives = 1071/1546 (69%), Gaps = 84/1546 (5%)

Query: 43   ERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIM 102
            E+ KP+ GGL+DPRLG+IDR  KC+TC   M ECPGHFGH+ELAKP+FHIGF+  +  + 
Sbjct: 3    EQNKPRVGGLNDPRLGSIDRNFKCQTCGEGMNECPGHFGHIELAKPVFHIGFISKIKKVC 62

Query: 103  RSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEE 162
              VC +C K+L DE +  FKQA++I++PK R   + +  K K  CE     + P +D E 
Sbjct: 63   ECVCMHCGKLLLDETNELFKQAIRIKDPKKRFNAVWNLSKTKMICEP----NYPVED-ES 117

Query: 163  PLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLK 222
                ++GGCG  QP +  +G+K+   ++  +   D+++  PE    ++ LTA  +L V K
Sbjct: 118  GQSVSRGGCGNSQPTVRRDGLKLWGTWRKGKDLEDNEQ--PE----RRLLTASEILTVFK 171

Query: 223  RISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV----------RPSDDLTHQLAMIIRH 272
             IS EDC+ LG +  YARP+W+IL VLP+PPPPV          R  DDLT++L+ I++ 
Sbjct: 172  HISPEDCRKLGFHEDYARPEWLILSVLPVPPPPVRPSISFNDTQRGEDDLTYKLSDIMKA 231

Query: 273  NENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAK 332
            N N+++ E +G+P H+I+EF  LLQFH+ATY DN++ GQP+A Q+SGRPIKSI +RLK K
Sbjct: 232  NINVQKLEMDGSPQHVINEFESLLQFHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGK 291

Query: 333  EGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELV 392
            EGRIRGNLMGKRVDFSARTVI+ DP + +DQ+GVP SIA  LTYPETVTPYNI +L ELV
Sbjct: 292  EGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPETVTPYNIHKLTELV 351

Query: 393  EYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPS 452
              GP+  PG   AKY+IRD G R+DLRY K++ D  L+ G+KVERHL D D VLFNRQPS
Sbjct: 352  RNGPNEHPG---AKYVIRDTGDRIDLRYNKRAGDIVLQYGWKVERHLMDNDPVLFNRQPS 408

Query: 453  LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPK 512
            LHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE++ +  VP 
Sbjct: 409  LHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELMNIAAVPL 468

Query: 513  CIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPR 572
             IVSPQSN+P MGIVQDTL G RK+T RD+FI+ D  MNIL W   ++G VPQPTILKP+
Sbjct: 469  QIVSPQSNKPCMGIVQDTLAGVRKMTLRDSFIDYDQMMNILYWIPGWNGVVPQPTILKPK 528

Query: 573  PLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGT 632
            PLWTGKQ+ ++ IPK I++ R      D    +L+  D  + +  G+++ G + KKT+G 
Sbjct: 529  PLWTGKQMLSMAIPKGIHMQRY-----DEGTTLLSPNDNGMMVVDGQIMFGVVDKKTVGA 583

Query: 633  STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTIS 692
            + G LIH +  E GP    +  G  Q +VN+W L N FSIGIGDTIADA TM+ I D I+
Sbjct: 584  TNGGLIHTVMREKGPKVCSELFGSLQKVVNFWFLHNGFSIGIGDTIADASTMKEITDAIA 643

Query: 693  KAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLK 752
             AK  V ++  +AQ   L  + G T+ ESFE+ V + LN ARD+AG SA+ +L   NN+K
Sbjct: 644  LAKEKVDDVTLEAQQNKLTAKHGMTLRESFEDNVIRYLNEARDKAGRSAEVNLKSLNNVK 703

Query: 753  AMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSY 812
             MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI FGF DRTLPHF KDDY PES+GFVENSY
Sbjct: 704  QMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFAKDDYSPESKGFVENSY 763

Query: 813  LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 872
            LRGLTPQEF+FHAMGGREGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLG++I
Sbjct: 764  LRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNII 823

Query: 873  QFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKE 932
            QF+YGEDG+D+  +E QT+D++  + + F+K +  ++     +    L E   ++    E
Sbjct: 824  QFIYGEDGLDACHVEKQTIDTIPGEHAAFEKRYHVDLMSPKTSIKPSLLESGKEIIGNTE 883

Query: 933  LRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHP 992
            +++V D E ++L  DR Q   ++   G+ +WPLPVN++R+I NAQ+ F +DP + SD+  
Sbjct: 884  IQEVLDTEYKQLVEDR-QFLRKVFIDGEHNWPLPVNIRRIIQNAQQIFHIDPSKASDLTL 942

Query: 993  MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1052
             E+V  V +L  +L V+ G++ L  EAQ+NAT  F  L+RS   ++RV++E+RLT  AF 
Sbjct: 943  DEIVREVQRLCSKLLVLRGDNRLVSEAQQNATALFQCLVRSRLTTRRVIEEYRLTSVAFY 1002

Query: 1053 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1112
            WV  +IES+F +S+V PGEM+G VAAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+E
Sbjct: 1003 WVTAQIESQFQRSVVHPGEMVGVVAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKE 1062

Query: 1113 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1172
            I+NVAK +KTPSL+V+L P   + +ERAK ++ A+E+TTL+SVT ATE++YDP+P  T+I
Sbjct: 1063 ILNVAKNMKTPSLTVYLDPEYAADQERAKEIRSAIEHTTLKSVTIATEIYYDPEPRSTVI 1122

Query: 1173 EEDVEFVKSYYEMPDEDI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDD 1230
            EED E V  ++E+PDE+I  + +K SPWLLRIEL+R  M DK L+MA V EKI + F DD
Sbjct: 1123 EEDEEMVNLHFEIPDEEIEASIDKQSPWLLRIELDRTQMNDKDLTMAEVGEKIKETFGDD 1182

Query: 1231 LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------ 1284
            L  I+++DNA+KLI+R R++ D  PK    D  AE+D  LK+IESNML  + LR      
Sbjct: 1183 LFIIWSEDNAEKLIIRCRVVRD--PKSMDEDSEAEEDQMLKRIESNMLEAITLRGVPDIT 1240

Query: 1285 -----------------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLG 1315
                                         GVNL  VMC   VDA R  +N  I+I+ VLG
Sbjct: 1241 RVVMMKYDRKLPDETGKYAKVPEWVLETDGVNLAEVMCVPGVDASRIYTNSFIDILTVLG 1300

Query: 1316 IEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRC 1375
            IEA R +L  E+  VI+ DGSYVNYRH+A+L D MT RGHLMA+TRHGINRNDTG +MRC
Sbjct: 1301 IEAGRASLYKEVYNVIASDGSYVNYRHMALLVDVMTSRGHLMAVTRHGINRNDTGALMRC 1360

Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKN----AIEL 1431
            SFEETV+ILL+A   AE D  RGV+EN++LGQLAP+GTG   + ++D  LK+    A+  
Sbjct: 1361 SFEETVEILLEAGAAAELDDCRGVSENVILGQLAPVGTGAFDVMVDDSALKDIPVSAVTD 1420

Query: 1432 QLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFS 1491
            +     E  + G T   S  S TP H   +      + ++  SP+ +A       G  F+
Sbjct: 1421 EFQPEEEANDGGAT---SYDSSTPQHSSEIE-----ADDVVFSPLIEAGTGGNANGGGFT 1472

Query: 1492 PTSSPGYSPSSPGYSPSSPG--YSPTSP-GYSPTSPGYSPTSPGYS 1534
                 G      GY+P+SPG   +PTSP GY+PTSP     SP Y+
Sbjct: 1473 EYGGSGGLTDYGGYAPTSPGAALNPTSPYGYAPTSPTGFAASPAYA 1518


>gi|357380836|pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
            Dna-Rna Hybrid
 gi|359546290|pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
            Dna-Rna Hybrid
 gi|359546308|pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
            Dna-Rna Hybrid
 gi|359546325|pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546342|pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546359|pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
            Dna-Rna Hybrid And Soaked With Gmpcpp
 gi|359546376|pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
            Dna-Rna Hybrid
 gi|359546392|pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|359546409|pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
            Dna-Rna Hybrid And Soaked With Ampcpp
 gi|374977879|pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
            Dna-Rna Hybrid
 gi|374977894|pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
 gi|380764979|pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd Lesion
          Length = 1732

 Score = 1591 bits (4120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 826/1579 (52%), Positives = 1089/1579 (68%), Gaps = 89/1579 (5%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
            YS A +  V+ VQFG+ SP+E+R +SV +I   ET +  + + K GGL+DPRLG+IDR +
Sbjct: 6    YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC   M ECPGHFGH++LAKP+FH+GF+  +  +   VC +C K+L DE +   +QA
Sbjct: 66   KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            L I++ K R   I   CK K  CE     DVP +D    L  ++GGCG  QP +  +G+K
Sbjct: 126  LAIKDSKKRFAAIWTLCKTKMVCE----TDVPSEDDPTQLV-SRGGCGNTQPTIRKDGLK 180

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            ++  +K  R   D  E  PE     + L+ E +L + K IS +D   LG N  ++RP+WM
Sbjct: 181  LVGSWKKDRATGDADE--PEL----RVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWM 234

Query: 245  ILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            IL  LP+PPPPV          R  DDLT +LA I++ N +L   E NGAP H I E   
Sbjct: 235  ILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAES 294

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+
Sbjct: 295  LLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS 354

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + +DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD G 
Sbjct: 355  GDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDSGD 411

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLN
Sbjct: 412  RIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLN 471

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G 
Sbjct: 472  LSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGI 531

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK+T RDTFIE D  +N+L W  D+DG +P P I+KP+PLW+GKQ+ ++ IP  I+L R 
Sbjct: 532  RKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQR- 590

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
                 D    +L+  D  + I  G+++ G + KKT+G+S G LIHV+  E GP    K  
Sbjct: 591  ----FDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLF 646

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
            G+ Q +VN+WLL N FS GIGDTIAD  TM  I +TI++AK  V ++ K+AQ   L  + 
Sbjct: 647  GNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKH 706

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G T+ ESFE+ V + LN ARD+AG  A+ +L + NN+K MV AGSKGSFINI+QM+ACVG
Sbjct: 707  GMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG 766

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 767  QQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLID 826

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDGMD+  IE Q+LD++
Sbjct: 827  TAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTI 886

Query: 895  KMKKSEFDKAFRFEM--DEENWNPNYML--QEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
                + F+K +R ++   +   +P+ +    E + DLK    L+ + D E ++L  DR +
Sbjct: 887  GGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLK----LQVLLDEEYKQLVKDR-K 941

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
               E+   G+++WPLPVN++R+I NAQ+TF +D  +PSD+   ++V  V  LQE L V+ 
Sbjct: 942  FLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLR 1001

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G++ +   AQ++A   F  LLRS  A++RVL+E+RLT++AF+WV+  IE++FL+S+V PG
Sbjct: 1002 GKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPG 1061

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L+
Sbjct: 1062 EMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLE 1121

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            PG  + +E+AK ++ A+E+TTL+SVT A+E++YDPDP  T+I ED E ++ ++ + DE+ 
Sbjct: 1122 PGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEA 1181

Query: 1191 AP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
                ++ SPWLLR+EL+R  M DK L+M  V E+I Q F +DL  I+++DN +KLI+R R
Sbjct: 1182 EQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCR 1241

Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------------------ 1284
            ++    PK    +  AE+D  LKKIE+ ML  + LR                        
Sbjct: 1242 VVR---PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEY 1298

Query: 1285 -----------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
                       GVNL  VM    +D  R  +N  I+I+EVLGIEA R AL  E+  VI+ 
Sbjct: 1299 VKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIAS 1358

Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
            DGSYVNYRH+A+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A   AE 
Sbjct: 1359 DGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAEL 1418

Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMTPARSPVS 1452
            D  RGV+EN++LGQ+APIGTG   + +++E ++K   E ++    +G + G+TP  S  S
Sbjct: 1419 DDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPY-SNES 1477

Query: 1453 GTPYHDGMMSPGYLFSPNLRLSPVTDAQ---FSPYVG---GMAFSPTSSPGYSPSSPGYS 1506
            G    D  +    +FSP L  S   DA    F+ Y G   G A SP  + G +P+SPG+ 
Sbjct: 1478 GLVNADLDVKDELMFSP-LVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFG 1536

Query: 1507 PSSPGYSPTSPGYSPTSPG 1525
             SSPG+SPTSP YSPTSP 
Sbjct: 1537 VSSPGFSPTSPTYSPTSPA 1555



 Score = 44.3 bits (103), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 23/27 (85%)

Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
            +PTSP +  +SP +SPTSP+YSPTSPA
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 43.9 bits (102), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 22/27 (81%)

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
            +PTSP +  +SP +SPTSP YSPTSPA
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 42.0 bits (97), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 21/27 (77%)

Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
            +PTSP +  +SP +SPTSP YSPTSP 
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 41.6 bits (96), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 22/64 (34%)

Query: 1652 YSPTSPSYS------------------PTSP--AY--SPTSPGYSPTSPSYSPTSPTYSP 1689
            +SP   S S                   TSP  AY  +PTSPG+  +SP +SPTSPTYSP
Sbjct: 1492 FSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSP 1551

Query: 1690 TSPS 1693
            TSP+
Sbjct: 1552 TSPA 1555


>gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit [Saccharomyces cerevisiae]
          Length = 1726

 Score = 1591 bits (4120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 826/1579 (52%), Positives = 1090/1579 (69%), Gaps = 89/1579 (5%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
            YS A +  V+ VQFG+ SP+E+R +SV +I   ET +  + + K GGL+DPRLG+IDR +
Sbjct: 6    YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC   M ECPGHFGH++LAKP+FH+GF+  +  +   VC +C K+L DE +   +QA
Sbjct: 66   KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            L I++ K R   I   CK K  CE     DVP +D    L  ++GGCG  QP +  +G+K
Sbjct: 126  LAIKDSKKRFAAIWTLCKTKMVCE----TDVPSEDDPTQLV-SRGGCGNTQPTIRKDGLK 180

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            ++  +K  R   D  E  PE     + L+ E +L + K IS +D   LG N  ++RP+WM
Sbjct: 181  LVGSWKKDRATGDADE--PEL----RVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWM 234

Query: 245  ILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            IL  LP+PPPPV          R  DDLT +LA I++ N +L   E NGAP H I E   
Sbjct: 235  ILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAES 294

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+
Sbjct: 295  LLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS 354

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + +DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD G 
Sbjct: 355  GDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDSGD 411

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLN
Sbjct: 412  RIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLN 471

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G 
Sbjct: 472  LSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGI 531

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK+T RDTFIE D  +N+L W  D+DG +P P I+KP+PLW+GKQ+ ++ IP  I+L R 
Sbjct: 532  RKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQR- 590

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
                 D    +L+  D  + I  G+++ G + KKT+G+S G LIHV+  E GP    K  
Sbjct: 591  ----FDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLF 646

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
            G+ Q +VN+WLL N FS GIGDTIAD  TM  I +TI++AK  V ++ K+AQ   L  + 
Sbjct: 647  GNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKH 706

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G T+ ESFE+ V + LN ARD+AG  A+ +L + NN+K MV AGSKGSFINI+QM+ACVG
Sbjct: 707  GMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG 766

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 767  QQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLID 826

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDGMD+  IE Q+LD++
Sbjct: 827  TAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTI 886

Query: 895  KMKKSEFDKAFRFEM--DEENWNPNYML--QEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
                + F+K +R ++   +   +P+ +    E + DLK    L+ + D E ++L  DR +
Sbjct: 887  GGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLK----LQVLLDEEYKQLVKDR-K 941

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
               E+   G+++WPLPVN++R+I NAQ+TF +D  +PSD+   ++V  V  LQE L V+ 
Sbjct: 942  FLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLR 1001

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G++ +   AQ++A   F  LLRS  A++RVL+E+RLT++AF+WV+  IE++FL+S+V PG
Sbjct: 1002 GKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPG 1061

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L+
Sbjct: 1062 EMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLE 1121

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            PG  + +E+AK ++ A+E+TTL+SVT A+E++YDPDP  T+I ED E ++ ++ + DE+ 
Sbjct: 1122 PGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEA 1181

Query: 1191 AP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
                ++ SPWLLR+EL+R  M DK L+M  V E+I Q F +DL  I+++DN +KLI+R R
Sbjct: 1182 EQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCR 1241

Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------------------ 1284
            ++    PK    +  AE+D  LKKIE+ ML  + LR                        
Sbjct: 1242 VVR---PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEY 1298

Query: 1285 -----------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
                       GVNL  VM    +D  R  +N  I+I+EVLGIEA R AL  E+  VI+ 
Sbjct: 1299 VKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIAS 1358

Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
            DGSYVNYRH+A+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A   AE 
Sbjct: 1359 DGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAEL 1418

Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMTPARSPVS 1452
            D  RGV+EN++LGQ+APIGTG   + +++E ++K   E ++    +G + G+TP  S  S
Sbjct: 1419 DDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPY-SNES 1477

Query: 1453 GTPYHDGMMSPGYLFSPNLRLSPVTDAQ---FSPYVG---GMAFSPTSSPGYSPSSPGYS 1506
            G    D  +    +FSP L  S   DA    F+ Y G   G A SP ++ G +P+SPG+ 
Sbjct: 1478 GLVNADLDVKDELMFSP-LVDSGSNDAMAGGFTAYGGVDYGEATSPFAAYGEAPTSPGFG 1536

Query: 1507 PSSPGYSPTSPGYSPTSPG 1525
             SSPG+SPTSP YSPTSP 
Sbjct: 1537 VSSPGFSPTSPTYSPTSPA 1555



 Score = 44.3 bits (103), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 23/27 (85%)

Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPA 1665
            +PTSP +  +SP +SPTSP+YSPTSPA
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 43.9 bits (102), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 22/27 (81%)

Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPA 1616
            +PTSP +  +SP +SPTSP YSPTSPA
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 43.1 bits (100), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 22/27 (81%)

Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
            +PTSP +  +SP +SPTSP YSPTSP+
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555


>gi|85111774|ref|XP_964097.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
            OR74A]
 gi|28925863|gb|EAA34861.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
            OR74A]
          Length = 1752

 Score = 1591 bits (4120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 862/1769 (48%), Positives = 1151/1769 (65%), Gaps = 182/1769 (10%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            F +S A +  ++ +QFG+LSP+EI+ MSV  I + ET +  R KP+ GGL+DP LG++DR
Sbjct: 6    FAHSSAPLRTIKEIQFGLLSPEEIKGMSVAHIVYPETMDETRTKPRDGGLNDPLLGSVDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TC  NM+ECPGHFGH+ELA+P++H GF+K V  ++  VC NCSK+LAD +D +F 
Sbjct: 66   QFKCKTCGENMSECPGHFGHIELARPVYHPGFIKRVKKMLEIVCHNCSKVLADRNDKEFA 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKKNKG------GCGAQQ 175
             A++IR+PK R  ++   CK K +CE  +E+     D E  PL   KG      GCG   
Sbjct: 126  AAMRIRDPKVRFNRVWAVCKKKRRCE--NEVVKKSDDDEFNPLADAKGELPGHGGCGNDH 183

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P +  + + + A++  +     D+E +    + K+ +T E  L +L  +++ D   +G+N
Sbjct: 184  PTVRQQALTLYAQFDTK-----DEEGVKS--KEKKIITPEMALNILHNMTESDMIDIGIN 236

Query: 236  PKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERN 282
               ARP+WMI+ V             +      +R  DDLT++L  IIR N N+R+  + 
Sbjct: 237  ISQARPEWMIITVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVRQAIQE 296

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+PAHII++F  LLQ+H+ATY DN++ GQP+A Q+SGRP+K+I +RLK KEGR+RGNLMG
Sbjct: 297  GSPAHIINDFENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMG 356

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT D  I++D++GVP SIA  LTYPETVTPYNI +L + V+ GP+  PG 
Sbjct: 357  KRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIGKLTQYVQNGPNEHPG- 415

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              AKY+IR DG R+DLR+ +++    LE G+KVERHL DGD+++FNRQPSLHK S+MGHR
Sbjct: 416  --AKYVIRSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHR 473

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL MVP  IVSPQ N P
Sbjct: 474  VKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNGP 533

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            +MGIVQDTL G  K+ +RD F+ K+  MNI++W  ++DG +P P ILKPRP WTGKQ+ +
Sbjct: 534  LMGIVQDTLAGAYKLCRRDVFLTKEEVMNIMLWVPEWDGIIPVPAILKPRPRWTGKQIIS 593

Query: 583  LIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            +++PK INL      + D D G     D  + I++GE++ G + KK +G ++G ++H+ +
Sbjct: 594  MVVPKIINL-----KNIDEDDGECPLKDKGILIQQGEVIFGLMTKKIVGAASGGIVHLCY 648

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E+GP  A  FL   Q +VNYWLL N  SIGIGDTI DA T+  +   I  AK  VK L 
Sbjct: 649  NELGPSGAMDFLNGCQRVVNYWLLHNGHSIGIGDTIPDAATIAKVQTHIDDAKAEVKQLT 708

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
              A +  LEP PG  + E+FENKV++ LNTARD+AG++ + SL + NN   M  +GSKGS
Sbjct: 709  DMATNNQLEPLPGMNIRETFENKVSKALNTARDKAGTTTESSLKDINNAVTMALSGSKGS 768

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
             INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFF
Sbjct: 769  SINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFF 828

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED   +YDGTVRNSLGD+IQF+YGEDG+D
Sbjct: 829  FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDSAAQYDGTVRNSLGDIIQFVYGEDGLD 888

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
             + IE+Q +D   +    FDK +R + MDEE  +      EY  +L +   ++++ D E 
Sbjct: 889  GIAIENQPVDHFTISNKAFDKRYRLDVMDEEVSSGELEALEYGKELASDPTVQELLDQEY 948

Query: 942  QKLEADRYQLATEIATSG--DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
            ++L  DR+ L     T G  D+   LP+N+ R+I  A+K FKVD    SD+ P +V+ AV
Sbjct: 949  EQLSVDRHMLREIQRTKGNNDTKMQLPLNIIRIIDTAKKLFKVDETARSDLTPKDVIPAV 1008

Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
              + +R+ VV G+DP+S EA  NAT+ F   LRS  A KR+  + R+ + AF  ++GE+E
Sbjct: 1009 KAMLDRMIVVRGDDPISKEADYNATILFKAQLRSRLAFKRLAVQDRINKLAFNHILGELE 1068

Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
            +R+ +S+V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA  
Sbjct: 1069 NRWSRSMVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVASN 1128

Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
            IKTPS+ V+L     +T+E AK ++ A+E+T+LRSVT  TE++YDPD   T I ED + V
Sbjct: 1129 IKTPSMMVYLDSKA-ATQEEAKKMRSAVEHTSLRSVTAVTEIYYDPDITSTNIPEDYDLV 1187

Query: 1180 KSYYEMPDEDIAP----EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIF 1235
            +SY+ +PD+        E  S WLLRI L+R+ M+DK L +  VA +I + +  D+  +F
Sbjct: 1188 ESYFLIPDQSGDEPDPIENQSRWLLRITLDRQKMLDKGLRVEDVAHRIKEVYKKDVAVVF 1247

Query: 1236 NDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------- 1286
            +D+NA+++++RIR++  +  K E  ++  EDDV LK++E ++L    LRGV         
Sbjct: 1248 SDNNAEEMVIRIRVIKADDDKDEDGNKIIEDDVMLKRLEKHLLDGCTLRGVEGIERAFLN 1307

Query: 1287 --------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVL 1314
                                            +L  V+  E VD +RTT+N L ++++V 
Sbjct: 1308 KGVKLIEAKDGSMKHSKVDDECQEWYLDTQGTSLREVLTVEGVDTKRTTTNDLWQVVDVF 1367

Query: 1315 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
            GIE  R AL+ EL  V++FDGSYVN+RHLA+LCD MTYRG + A+TRHGINR DTG +MR
Sbjct: 1368 GIEGARAALMHELTAVLAFDGSYVNHRHLALLCDVMTYRGSIAAVTRHGINRADTGALMR 1427

Query: 1375 CSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLP 1434
            CSFEETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG   ++L+ +ML+  I     
Sbjct: 1428 CSFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGAFDVFLDPKMLETVIS---D 1484

Query: 1435 SYMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYL--FSPNLRLSPVTDAQFSPYVGGM 1488
            +   GL  GMT   S + G  TPY  G  M   G+L  +SP +         FSP  G  
Sbjct: 1485 NSRMGLMPGMTVKGSQLDGAATPYDTGSPMADSGFLGSYSPTM-------GNFSPIQGAG 1537

Query: 1489 AFSPTSSPGYSPSSPGY----------SPSSPGYSPTSPGYSPTSP----GYSPTSP--G 1532
            + SPT++ G+     G           S +SP    TSP ++PTSP    GYSP+SP  G
Sbjct: 1538 SDSPTNN-GFGTDYGGVGGYGSGTSYSSATSP--RATSP-FTPTSPFSYGGYSPSSPAAG 1593

Query: 1533 YSPTSPTYSPSS-----------------------PG----------------------- 1546
            YSP+SP    +                        PG                       
Sbjct: 1594 YSPSSPLLDSAGRFASSPQFSPSSPSFSPTSPMLRPGSPTSPSYSPTSPSYSPASPAAAR 1653

Query: 1547 YSPTSPAYS---------PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSY 1596
            YSPTSPA           PTSPSYSP SP++  TSPSYSP SP++SPTSP +YSPTSPS+
Sbjct: 1654 YSPTSPAQQFSPTSPSYSPTSPSYSPASPAFQATSPSYSPASPTWSPTSPDAYSPTSPSF 1713

Query: 1597 SPT-SPSYSPTSP-AYSPTSPAYSPTSPA 1623
              +     SPTSP  YSPTSP YSP +P 
Sbjct: 1714 QRSPGQQLSPTSPTGYSPTSPQYSPRTPG 1742



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 99/254 (38%), Gaps = 103/254 (40%)

Query: 1588 SYSPTSPSYSPT--SPSYSPTSPAYSPTSPAYSPT------SPAYSPTSPS-YSPTSP-- 1636
            SYSPT  ++SP   + S SPT+  +                S A SP + S ++PTSP  
Sbjct: 1522 SYSPTMGNFSPIQGAGSDSPTNNGFGTDYGGVGGYGSGTSYSSATSPRATSPFTPTSPFS 1581

Query: 1637 --SYSPTSPS--YSPTSPSYSPTS------------------------------------ 1656
               YSP+SP+  YSP+SP                                          
Sbjct: 1582 YGGYSPSSPAAGYSPSSPLLDSAGRFASSPQFSPSSPSFSPTSPMLRPGSPTSPSYSPTS 1641

Query: 1657 ----------PSYSPTSPAYS----------------PTSPGYSPTSPSYSPTSPTYSPT 1690
                        YSPTSPA                  P SP +  TSPSYSP SPT+SPT
Sbjct: 1642 PSYSPASPAAARYSPTSPAQQFSPTSPSYSPTSPSYSPASPAFQATSPSYSPASPTWSPT 1701

Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRL--SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTY 1748
            SP             AYSP+SP    SP    SPTSP      + YSPTSP YSP +P  
Sbjct: 1702 SPD------------AYSPTSPSFQRSPGQQLSPTSP------TGYSPTSPQYSPRTPG- 1742

Query: 1749 SPSSPYNAGGGNPD 1762
                  N  GGN D
Sbjct: 1743 -----RNNSGGNGD 1751


>gi|6320061|ref|NP_010141.1| Rpo21p [Saccharomyces cerevisiae S288c]
 gi|2507347|sp|P04050.2|RPB1_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit 1; Short=RNA polymerase II subunit
            B1; AltName: Full=DNA-directed RNA polymerase III largest
            subunit; AltName: Full=RNA polymerase II subunit B220
 gi|14278324|pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
 gi|14278335|pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
 gi|14278365|pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
 gi|20150713|pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
            The Inhibitor Alpha Amanitin
 gi|30749616|pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
 gi|30749737|pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
 gi|34810553|pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
 gi|46015415|pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
 gi|46015780|pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex
 gi|56965911|pdb|1R9S|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
            Matched Nucleotide
 gi|56965923|pdb|1R9T|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
            Mismatched Nucleotide
 gi|56966107|pdb|1TWA|A Chain A, Rna Polymerase Ii Complexed With Atp
 gi|56966121|pdb|1TWC|A Chain A, Rna Polymerase Ii Complexed With Gtp
 gi|56966131|pdb|1TWF|A Chain A, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
 gi|56966141|pdb|1TWG|A Chain A, Rna Polymerase Ii Complexed With Ctp
 gi|56966151|pdb|1TWH|A Chain A, Rna Polymerase Ii Complexed With 2'datp
 gi|58177164|pdb|1WCM|A Chain A, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
 gi|61679444|pdb|1Y1W|A Chain A, Complete Rna Polymerase Ii Elongation Complex
 gi|61679461|pdb|1Y77|A Chain A, Complete Rna Polymerase Ii Elongation Complex With Substrate
            Analogue Gmpcpp
 gi|61679502|pdb|1Y1V|A Chain A, Refined Rna Polymerase Ii-tfiis Complex
 gi|61679515|pdb|1Y1Y|A Chain A, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
 gi|83754243|pdb|2B63|A Chain A, Complete Rna Polymerase Ii-Rna Inhibitor Complex
 gi|110590854|pdb|2B8K|A Chain A, 12-Subunit Rna Polymerase Ii
 gi|122920061|pdb|2E2H|A Chain A, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
 gi|122920076|pdb|2E2I|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
            Dgtp
 gi|122920091|pdb|2E2J|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
            Gmpcpp
 gi|122921030|pdb|2NVQ|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
            2'dutp
 gi|122921066|pdb|2NVT|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
            Gmpcpp
 gi|122921082|pdb|2NVX|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
            Dutp
 gi|122921097|pdb|2NVY|A Chain A, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
 gi|122921109|pdb|2NVZ|A Chain A, Rna Polymerase Ii Elongation Complex With Utp, Updated
            112006
 gi|134104674|pdb|2JA5|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex A
 gi|134104689|pdb|2JA6|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex B
 gi|134104710|pdb|2JA7|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
 gi|134104722|pdb|2JA7|M Chain M, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
 gi|134104734|pdb|2JA8|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex D
 gi|146387184|pdb|2YU9|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With Utp
 gi|160877773|pdb|2R7Z|A Chain A, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
            Complex
 gi|161172227|pdb|2R92|A Chain A, Elongation Complex Of Rna Polymerase Ii With Artificial Rdrp
            Scaffold
 gi|161172240|pdb|2R93|A Chain A, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
            Delta Virus-Derived Rna Stem Loop
 gi|190613462|pdb|2VUM|A Chain A, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
            Elongation Complex
 gi|194368734|pdb|3CQZ|A Chain A, Crystal Structure Of 10 Subunit Rna Polymerase Ii In Complex
            With The Inhibitor Alpha-Amanitin
 gi|224983590|pdb|3FKI|A Chain A, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
 gi|239781916|pdb|3GTG|A Chain A, Backtracked Rna Polymerase Ii Complex With 12mer Rna
 gi|239781929|pdb|3GTJ|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer Rna
 gi|239781942|pdb|3GTK|A Chain A, Backtracked Rna Polymerase Ii Complex With 18mer Rna
 gi|239781955|pdb|3GTL|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
            Mismatch
 gi|239781968|pdb|3GTM|A Chain A, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
 gi|239781982|pdb|3GTO|A Chain A, Backtracked Rna Polymerase Ii Complex With 15mer Rna
 gi|239781995|pdb|3GTP|A Chain A, Backtracked Rna Polymerase Ii Complex With 24mer Rna
 gi|239782008|pdb|3GTQ|A Chain A, Backtracked Rna Polymerase Ii Complex Induced By Damage
 gi|240104511|pdb|3H3V|B Chain B, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
            Active Site
 gi|254839441|pdb|3HOU|A Chain A, Complete Rna Polymerase Ii Elongation Complex I With A T-U
            Mismatch
 gi|254839456|pdb|3HOU|M Chain M, Complete Rna Polymerase Ii Elongation Complex I With A T-U
            Mismatch
 gi|254839471|pdb|3HOV|A Chain A, Complete Rna Polymerase Ii Elongation Complex Ii
 gi|254839486|pdb|3HOW|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iii With A T-U
            Mismatch And A Frayed Rna 3'-Uridine
 gi|254839501|pdb|3HOX|A Chain A, Complete Rna Polymerase Ii Elongation Complex V
 gi|254839516|pdb|3HOY|A Chain A, Complete Rna Polymerase Ii Elongation Complex Vi
 gi|254839531|pdb|3HOZ|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iv With A T-U
            Mismatch And A Frayed Rna 3'-Guanine
 gi|257471946|pdb|3I4M|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
            D
 gi|257471961|pdb|3I4N|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
            E
 gi|266618765|pdb|3K1F|A Chain A, Crystal Structure Of Rna Polymerase Ii In Complex With Tfiib
 gi|269914552|pdb|3K7A|A Chain A, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
 gi|295982475|pdb|3M3Y|A Chain A, Rna Polymerase Ii Elongation Complex C
 gi|295982488|pdb|3M4O|A Chain A, Rna Polymerase Ii Elongation Complex B
 gi|325053963|pdb|3PO2|A Chain A, Arrested Rna Polymerase Ii Elongation Complex
 gi|325053978|pdb|3PO3|A Chain A, Arrested Rna Polymerase Ii Reactivation Intermediate
 gi|326634538|pdb|3QT1|A Chain A, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
            Subunit
 gi|343197456|pdb|3RZD|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
 gi|343197468|pdb|3RZO|A Chain A, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
 gi|343197480|pdb|3S14|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
 gi|343197492|pdb|3S15|A Chain A, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
 gi|343197504|pdb|3S16|A Chain A, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
 gi|343197516|pdb|3S17|A Chain A, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
 gi|343197528|pdb|3S1M|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            (Variant 1)
 gi|343197540|pdb|3S1N|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            (Variant 2)
 gi|343197552|pdb|3S1Q|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
            Rna Soaked With Atp
 gi|343197564|pdb|3S1R|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
            Rna Soaked With Gtp
 gi|343197576|pdb|3S2D|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
            Containing A 5br- U
 gi|343781197|pdb|3S2H|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
            Containing A 2[prime]-Iodo Atp
 gi|414145446|pdb|4BBR|A Chain A, Structure Of Rna Polymerase Ii-tfiib Complex
 gi|414145459|pdb|4BBS|A Chain A, Structure Of An Initially Transcribing Rna Polymerase Ii-
            Tfiib Complex
 gi|1419221|emb|CAA65619.1| RPB1 [Saccharomyces cerevisiae]
 gi|1431217|emb|CAA98713.1| RPO21 [Saccharomyces cerevisiae]
 gi|151941861|gb|EDN60217.1| RNA polymerase [Saccharomyces cerevisiae YJM789]
 gi|285810894|tpg|DAA11718.1| TPA: Rpo21p [Saccharomyces cerevisiae S288c]
 gi|349576938|dbj|GAA22107.1| K7_Rpo21p [Saccharomyces cerevisiae Kyokai no. 7]
 gi|392300684|gb|EIW11775.1| Rpo21p [Saccharomyces cerevisiae CEN.PK113-7D]
          Length = 1733

 Score = 1591 bits (4119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 826/1579 (52%), Positives = 1089/1579 (68%), Gaps = 89/1579 (5%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
            YS A +  V+ VQFG+ SP+E+R +SV +I   ET +  + + K GGL+DPRLG+IDR +
Sbjct: 6    YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC   M ECPGHFGH++LAKP+FH+GF+  +  +   VC +C K+L DE +   +QA
Sbjct: 66   KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            L I++ K R   I   CK K  CE     DVP +D    L  ++GGCG  QP +  +G+K
Sbjct: 126  LAIKDSKKRFAAIWTLCKTKMVCE----TDVPSEDDPTQLV-SRGGCGNTQPTIRKDGLK 180

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            ++  +K  R   D  E  PE     + L+ E +L + K IS +D   LG N  ++RP+WM
Sbjct: 181  LVGSWKKDRATGDADE--PEL----RVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWM 234

Query: 245  ILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            IL  LP+PPPPV          R  DDLT +LA I++ N +L   E NGAP H I E   
Sbjct: 235  ILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAES 294

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+
Sbjct: 295  LLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS 354

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + +DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD G 
Sbjct: 355  GDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDSGD 411

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLN
Sbjct: 412  RIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLN 471

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G 
Sbjct: 472  LSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGI 531

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK+T RDTFIE D  +N+L W  D+DG +P P I+KP+PLW+GKQ+ ++ IP  I+L R 
Sbjct: 532  RKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQR- 590

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
                 D    +L+  D  + I  G+++ G + KKT+G+S G LIHV+  E GP    K  
Sbjct: 591  ----FDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLF 646

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
            G+ Q +VN+WLL N FS GIGDTIAD  TM  I +TI++AK  V ++ K+AQ   L  + 
Sbjct: 647  GNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKH 706

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G T+ ESFE+ V + LN ARD+AG  A+ +L + NN+K MV AGSKGSFINI+QM+ACVG
Sbjct: 707  GMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG 766

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 767  QQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLID 826

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDGMD+  IE Q+LD++
Sbjct: 827  TAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTI 886

Query: 895  KMKKSEFDKAFRFEM--DEENWNPNYML--QEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
                + F+K +R ++   +   +P+ +    E + DLK    L+ + D E ++L  DR +
Sbjct: 887  GGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLK----LQVLLDEEYKQLVKDR-K 941

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
               E+   G+++WPLPVN++R+I NAQ+TF +D  +PSD+   ++V  V  LQE L V+ 
Sbjct: 942  FLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLR 1001

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G++ +   AQ++A   F  LLRS  A++RVL+E+RLT++AF+WV+  IE++FL+S+V PG
Sbjct: 1002 GKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPG 1061

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L+
Sbjct: 1062 EMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLE 1121

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            PG  + +E+AK ++ A+E+TTL+SVT A+E++YDPDP  T+I ED E ++ ++ + DE+ 
Sbjct: 1122 PGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEA 1181

Query: 1191 AP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
                ++ SPWLLR+EL+R  M DK L+M  V E+I Q F +DL  I+++DN +KLI+R R
Sbjct: 1182 EQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCR 1241

Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------------------ 1284
            ++    PK    +  AE+D  LKKIE+ ML  + LR                        
Sbjct: 1242 VVR---PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEY 1298

Query: 1285 -----------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
                       GVNL  VM    +D  R  +N  I+I+EVLGIEA R AL  E+  VI+ 
Sbjct: 1299 VKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIAS 1358

Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
            DGSYVNYRH+A+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A   AE 
Sbjct: 1359 DGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAEL 1418

Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMTPARSPVS 1452
            D  RGV+EN++LGQ+APIGTG   + +++E ++K   E ++    +G + G+TP  S  S
Sbjct: 1419 DDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPY-SNES 1477

Query: 1453 GTPYHDGMMSPGYLFSPNLRLSPVTDAQ---FSPYVG---GMAFSPTSSPGYSPSSPGYS 1506
            G    D  +    +FSP L  S   DA    F+ Y G   G A SP  + G +P+SPG+ 
Sbjct: 1478 GLVNADLDVKDELMFSP-LVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFG 1536

Query: 1507 PSSPGYSPTSPGYSPTSPG 1525
             SSPG+SPTSP YSPTSP 
Sbjct: 1537 VSSPGFSPTSPTYSPTSPA 1555



 Score = 44.3 bits (103), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 23/27 (85%)

Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
            +PTSP +  +SP +SPTSP+YSPTSPA
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 43.9 bits (102), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 22/27 (81%)

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
            +PTSP +  +SP +SPTSP YSPTSPA
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 42.0 bits (97), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 21/27 (77%)

Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
            +PTSP +  +SP +SPTSP YSPTSP 
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 41.6 bits (96), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 22/64 (34%)

Query: 1652 YSPTSPSYS------------------PTSP--AY--SPTSPGYSPTSPSYSPTSPTYSP 1689
            +SP   S S                   TSP  AY  +PTSPG+  +SP +SPTSPTYSP
Sbjct: 1492 FSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSP 1551

Query: 1690 TSPS 1693
            TSP+
Sbjct: 1552 TSPA 1555


>gi|259145103|emb|CAY78367.1| Rpo21p [Saccharomyces cerevisiae EC1118]
          Length = 1733

 Score = 1589 bits (4115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 825/1579 (52%), Positives = 1089/1579 (68%), Gaps = 89/1579 (5%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
            YS A +  V+ VQFG+ SP+E+R +SV +I   ET +  + + K GGL+DPRLG+IDR +
Sbjct: 6    YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC   M ECPGHFGH++LAKP+FH+GF+  +  +   VC +C K+L DE +   +QA
Sbjct: 66   KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            L I++ K R   I   CK K  CE     DVP +D    L  ++GGCG  QP +  +G+K
Sbjct: 126  LAIKDSKKRFAAIWTLCKTKMVCE----TDVPSEDDPTQLV-SRGGCGNTQPTIRKDGLK 180

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            ++  +K  R   D  E  PE     + L+ E +L + K IS +D   LG N  ++RP+WM
Sbjct: 181  LVGSWKKDRATGDADE--PEL----RVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWM 234

Query: 245  ILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            IL  LP+PPPPV          R  DDLT +LA I++ N +L   E NGAP H I E   
Sbjct: 235  ILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAES 294

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+
Sbjct: 295  LLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS 354

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + +DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD G 
Sbjct: 355  GDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDSGD 411

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLN
Sbjct: 412  RIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLN 471

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G 
Sbjct: 472  LSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGI 531

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK+T RDTFIE D  +N+L W  D+DG +P P I+KP+PLW+GKQ+ ++ IP  I+L R 
Sbjct: 532  RKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPSGIHLQR- 590

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
                 D    +L+  D  + I  G+++ G + KKT+G+S G LIHV+  E GP    K  
Sbjct: 591  ----FDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLF 646

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
            G+ Q +VN+WLL N FS GIGDTIAD  TM  I +TI++AK  V ++ K+AQ   L  + 
Sbjct: 647  GNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKH 706

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G T+ ESFE+ V + LN ARD+AG  A+ ++ + NN+K MV AGSKGSFINI+QM+ACVG
Sbjct: 707  GMTLRESFEDNVVRFLNEARDKAGRLAEVNMKDLNNVKQMVMAGSKGSFINIAQMSACVG 766

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 767  QQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLID 826

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDGMD+  IE Q+LD++
Sbjct: 827  TAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTI 886

Query: 895  KMKKSEFDKAFRFEM--DEENWNPNYML--QEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
                + F+K +R ++   +   +P+ +    E + DLK    L+ + D E ++L  DR +
Sbjct: 887  GGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLK----LQVLLDEEYKQLVKDR-K 941

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
               E+   G+++WPLPVN++R+I NAQ+TF +D  +PSD+   ++V  V  LQE L V+ 
Sbjct: 942  FLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLR 1001

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G++ +   AQ++A   F  LLRS  A++RVL+E+RLT++AF+WV+  IE++FL+S+V PG
Sbjct: 1002 GKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPG 1061

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L+
Sbjct: 1062 EMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLE 1121

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            PG  + +E+AK ++ A+E+TTL+SVT A+E++YDPDP  T+I ED E ++ ++ + DE+ 
Sbjct: 1122 PGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEA 1181

Query: 1191 AP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
                ++ SPWLLR+EL+R  M DK L+M  V E+I Q F +DL  I+++DN +KLI+R R
Sbjct: 1182 EQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCR 1241

Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---------------------- 1286
            ++    PK    +  AE+D  LKKIE+ ML  + LRGV                      
Sbjct: 1242 VVR---PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEY 1298

Query: 1287 -------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
                         NL  VM    +D  R  +N  I+I+EVLGIEA R AL  E+  VI+ 
Sbjct: 1299 VKEPEWVLETDGANLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIAS 1358

Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
            DGSYVNYRH+A+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A   AE 
Sbjct: 1359 DGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAEL 1418

Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMTPARSPVS 1452
            D  RGV+EN++LGQ+APIGTG   + +++E ++K   E ++    +G + G+TP  S  S
Sbjct: 1419 DDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPY-SNES 1477

Query: 1453 GTPYHDGMMSPGYLFSPNLRLSPVTDAQ---FSPYVG---GMAFSPTSSPGYSPSSPGYS 1506
            G    D  +    +FSP L  S   DA    F+ Y G   G A SP  + G +P+SPG+ 
Sbjct: 1478 GLVNADLDVKDELMFSP-LVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFG 1536

Query: 1507 PSSPGYSPTSPGYSPTSPG 1525
             SSPG+SPTSP YSPTSP 
Sbjct: 1537 VSSPGFSPTSPTYSPTSPA 1555



 Score = 44.3 bits (103), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 23/27 (85%)

Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
            +PTSP +  +SP +SPTSP+YSPTSPA
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 43.9 bits (102), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 22/27 (81%)

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
            +PTSP +  +SP +SPTSP YSPTSPA
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 42.0 bits (97), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 21/27 (77%)

Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
            +PTSP +  +SP +SPTSP YSPTSP 
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 41.6 bits (96), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 22/64 (34%)

Query: 1652 YSPTSPSYS------------------PTSP--AY--SPTSPGYSPTSPSYSPTSPTYSP 1689
            +SP   S S                   TSP  AY  +PTSPG+  +SP +SPTSPTYSP
Sbjct: 1492 FSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSP 1551

Query: 1690 TSPS 1693
            TSP+
Sbjct: 1552 TSPA 1555


>gi|256273567|gb|EEU08500.1| Rpo21p [Saccharomyces cerevisiae JAY291]
          Length = 1733

 Score = 1589 bits (4114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 825/1579 (52%), Positives = 1088/1579 (68%), Gaps = 89/1579 (5%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
            YS A +  V+ VQFG+ SP+E+R +SV +I   ET +  + + K GGL+DPRLG+IDR +
Sbjct: 6    YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC   M ECPGHFGH++LAKP+FH+GF+  +  +   VC +C K+L DE +   + A
Sbjct: 66   KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRHA 125

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            L I++ K R   I   CK K  CE     DVP +D    L  ++GGCG  QP +  +G+K
Sbjct: 126  LAIKDSKKRFAAIWTLCKTKMVCE----TDVPSEDDPTQLV-SRGGCGNTQPTIRKDGLK 180

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            ++  +K  R   D  E  PE     + L+ E +L + K IS +D   LG N  ++RP+WM
Sbjct: 181  LVGSWKKDRATGDADE--PEL----RVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWM 234

Query: 245  ILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            IL  LP+PPPPV          R  DDLT +LA I++ N +L   E NGAP H I E   
Sbjct: 235  ILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAES 294

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+
Sbjct: 295  LLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS 354

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + +DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD G 
Sbjct: 355  GDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDSGD 411

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLN
Sbjct: 412  RIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLN 471

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G 
Sbjct: 472  LSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGI 531

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK+T RDTFIE D  +N+L W  D+DG +P P I+KP+PLW+GKQ+ ++ IP  I+L R 
Sbjct: 532  RKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQR- 590

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
                 D    +L+  D  + I  G+++ G + KKT+G+S G LIHV+  E GP    K  
Sbjct: 591  ----FDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLF 646

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
            G+ Q +VN+WLL N FS GIGDTIAD  TM  I +TI++AK  V ++ K+AQ   L  + 
Sbjct: 647  GNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKH 706

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G T+ ESFE+ V + LN ARD+AG  A+ +L + NN+K MV AGSKGSFINI+QM+ACVG
Sbjct: 707  GMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG 766

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 767  QQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLID 826

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDGMD+  IE Q+LD++
Sbjct: 827  TAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTI 886

Query: 895  KMKKSEFDKAFRFEM--DEENWNPNYML--QEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
                + F+K +R ++   +   +P+ +    E + DLK    L+ + D E ++L  DR +
Sbjct: 887  GGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLK----LQVLLDEEYKQLVKDR-K 941

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
               E+   G+++WPLPVN++R+I NAQ+TF +D  +PSD+   ++V  V  LQE L V+ 
Sbjct: 942  FLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLR 1001

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G++ +   AQ++A   F  LLRS  A++RVL+E+RLT++AF+WV+  IE++FL+S+V PG
Sbjct: 1002 GKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPG 1061

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L+
Sbjct: 1062 EMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLE 1121

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            PG  + +E+AK ++ A+E+TTL+SVT A+E++YDPDP  T+I ED E ++ ++ + DE+ 
Sbjct: 1122 PGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEA 1181

Query: 1191 AP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
                ++ SPWLLR+EL+R  M DK L+M  V E+I Q F +DL  I+++DN +KLI+R R
Sbjct: 1182 EQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCR 1241

Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------------------ 1284
            ++    PK    +  AE+D  LKKIE+ ML  + LR                        
Sbjct: 1242 VVR---PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEY 1298

Query: 1285 -----------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
                       GVNL  VM    +D  R  +N  I+I+EVLGIEA R AL  E+  VI+ 
Sbjct: 1299 VKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIAS 1358

Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
            DGSYVNYRH+A+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A   AE 
Sbjct: 1359 DGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAEL 1418

Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMTPARSPVS 1452
            D  RGV+EN++LGQ+APIGTG   + +++E ++K   E ++    +G + G+TP  S  S
Sbjct: 1419 DDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPY-SNES 1477

Query: 1453 GTPYHDGMMSPGYLFSPNLRLSPVTDAQ---FSPYVG---GMAFSPTSSPGYSPSSPGYS 1506
            G    D  +    +FSP L  S   DA    F+ Y G   G A SP  + G +P+SPG+ 
Sbjct: 1478 GLVNADLDVKDELMFSP-LVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFG 1536

Query: 1507 PSSPGYSPTSPGYSPTSPG 1525
             SSPG+SPTSP YSPTSP 
Sbjct: 1537 VSSPGFSPTSPTYSPTSPA 1555



 Score = 44.3 bits (103), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 23/27 (85%)

Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
            +PTSP +  +SP +SPTSP+YSPTSPA
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 43.9 bits (102), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 22/27 (81%)

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
            +PTSP +  +SP +SPTSP YSPTSPA
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 42.0 bits (97), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 21/27 (77%)

Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
            +PTSP +  +SP +SPTSP YSPTSP 
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 41.6 bits (96), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 22/64 (34%)

Query: 1652 YSPTSPSYS------------------PTSP--AY--SPTSPGYSPTSPSYSPTSPTYSP 1689
            +SP   S S                   TSP  AY  +PTSPG+  +SP +SPTSPTYSP
Sbjct: 1492 FSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSP 1551

Query: 1690 TSPS 1693
            TSP+
Sbjct: 1552 TSPA 1555


>gi|190405143|gb|EDV08410.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
          Length = 1733

 Score = 1588 bits (4113), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 826/1579 (52%), Positives = 1088/1579 (68%), Gaps = 89/1579 (5%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
            YS A +  V+ VQFG+ SP+E+R +SV +I   ET +  + + K GGL+DPRLG+IDR +
Sbjct: 6    YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC   M ECPGHFGH++LAKP+FH+GF+  +  +   VC +C K+L DE +   +QA
Sbjct: 66   KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            L I++ K R   I   CK K  CE     DVP +D    L  ++GGCG  QP +  +G+K
Sbjct: 126  LAIKDSKKRFAAIWTLCKTKMVCE----TDVPSEDDPTQLV-SRGGCGNTQPTIRKDGLK 180

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            ++  +K  R   D  E  PE     + L+ E +L + K IS +D   LG N  ++RP+WM
Sbjct: 181  LVGSWKKDRATGDADE--PEL----RVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWM 234

Query: 245  ILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            IL  LP+PPPPV          R  DDLT +LA I++ N +L   E NGAP H I E   
Sbjct: 235  ILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAES 294

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+
Sbjct: 295  LLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS 354

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + +DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD G 
Sbjct: 355  GDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDSGD 411

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLN
Sbjct: 412  RIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLN 471

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G 
Sbjct: 472  LSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGI 531

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK+T RDTFIE D  +N+L W  D+DG +P P I+KP+PLW+GKQ+ ++ IP  I+L R 
Sbjct: 532  RKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQR- 590

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
                 D    +L+  D  + I  G+++ G + KKT+G+S G LIHV+  E GP    K  
Sbjct: 591  ----FDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLF 646

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
            G+ Q +VN+WLL N FS GIGDTIAD  TM  I +TI++AK  V ++ K+AQ   L  + 
Sbjct: 647  GNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKH 706

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G T+ ESFE+ V + LN ARD+AG  A+ +L + NN+K MV AGSKGSFINI+QM+ACVG
Sbjct: 707  GMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG 766

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 767  QQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLID 826

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDGMD+  IE Q+LD++
Sbjct: 827  TAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTI 886

Query: 895  KMKKSEFDKAFRFEM--DEENWNPNYML--QEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
                + F+K +R ++   +   +P+ +    E + DLK    L+ + D E ++L  DR +
Sbjct: 887  GGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLK----LQVLLDEEYKQLVKDR-K 941

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
               E+   G+++WPLPVN++R+I NAQ+TF +D  +PSD+   ++V  V  LQE L V+ 
Sbjct: 942  FLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLR 1001

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G++ +   AQ++A   F  LLRS  A++RVL+E+RLT++AF+WV+  IE++FL+S+V PG
Sbjct: 1002 GKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPG 1061

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L+
Sbjct: 1062 EMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLE 1121

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            PG  + +E+AK ++ A+E+TTL+SVT A+E++YDPDP  T+I ED E ++ ++ + DE+ 
Sbjct: 1122 PGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEA 1181

Query: 1191 AP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
                ++ SPWLLR+EL+R  M DK L+M  V E+I Q F +DL  I+++DN +KLI+R R
Sbjct: 1182 EQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCR 1241

Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------------------ 1284
            ++    PK    +  AE+D  LKKIE+ ML  + LR                        
Sbjct: 1242 VVR---PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEY 1298

Query: 1285 -----------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
                       GVNL  VM    +D  R  +N  I+I+EVLGIEA R AL  E+  VI+ 
Sbjct: 1299 VKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIAS 1358

Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
            DGSYVNYRH+A+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A   AE 
Sbjct: 1359 DGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAEL 1418

Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMTPARSPVS 1452
            D  RGV+EN++LGQ+APIGTG   + +++E ++K   E ++    +G + G+TP  S  S
Sbjct: 1419 DDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPY-SNES 1477

Query: 1453 GTPYHDGMMSPGYLFSPNLRLSPVTDAQ---FSPYVG---GMAFSPTSSPGYSPSSPGYS 1506
            G    D  +    +FSP L  S   DA    F+ Y G   G A SP  + G  P+SPG+ 
Sbjct: 1478 GLVNADLDVKDELMFSP-LVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEPPTSPGFG 1536

Query: 1507 PSSPGYSPTSPGYSPTSPG 1525
             SSPG+SPTSP YSPTSP 
Sbjct: 1537 VSSPGFSPTSPTYSPTSPA 1555



 Score = 43.9 bits (102), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query: 1584 PTSPSYSPTSPSYSPTSPSYSPTSPA 1609
            PTSP +  +SP +SPTSP+YSPTSPA
Sbjct: 1530 PTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 18/26 (69%), Positives = 21/26 (80%)

Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPA 1623
            PTSP +  +SP +SPTSP YSPTSPA
Sbjct: 1530 PTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 41.6 bits (96), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 17/26 (65%), Positives = 20/26 (76%)

Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPG 1672
            PTSP +  +SP +SPTSP YSPTSP 
Sbjct: 1530 PTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 41.2 bits (95), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 33/64 (51%), Gaps = 22/64 (34%)

Query: 1652 YSPTSPSYS------------------PTSP--AYS--PTSPGYSPTSPSYSPTSPTYSP 1689
            +SP   S S                   TSP  AY   PTSPG+  +SP +SPTSPTYSP
Sbjct: 1492 FSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEPPTSPGFGVSSPGFSPTSPTYSP 1551

Query: 1690 TSPS 1693
            TSP+
Sbjct: 1552 TSPA 1555


>gi|418204396|gb|AFX61752.1| RNA polymerase I largest subunit, partial [Ascosphaera aggregata]
          Length = 1697

 Score = 1588 bits (4112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 880/1730 (50%), Positives = 1144/1730 (66%), Gaps = 122/1730 (7%)

Query: 18   VQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDRKMKCETCTANMAE 75
            +QFG+LSPDEI++MSV +IE+ ET   +R +P+  GL+DPRLGTIDR  KC TC   + E
Sbjct: 1    IQFGLLSPDEIKKMSVAKIEYPETMDEQRQRPREAGLNDPRLGTIDRTWKCATCEEGINE 60

Query: 76   CPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLK 135
            CPGHFGH+ELA P+FHIGF+  +  ++ +VC NC KI  +++D K+  AL+ R+PK R  
Sbjct: 61   CPGHFGHIELASPVFHIGFLTKIKKLLETVCLNCGKIKVNQNDPKYLDALRYRDPKRRFD 120

Query: 136  KILDACKNKTKCEGGDEIDVPGQDGEEPLKK------NKGGCGAQQPKLTIEGMKMIAEY 189
             I    K+ T CE       P  D ++P  +        GGCG  QP +  EG+ ++  +
Sbjct: 121  AIWRLSKDITTCEAD-----PVVDEDDPFAERVERVPGHGGCGNAQPTIRREGLSLVGTW 175

Query: 190  KAQRKKN----DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
            K +R ++    DD  Q PE    K+T+T      V K IS  D +LLGL+ +YARP+WMI
Sbjct: 176  KPRRSRDMLGDDDDMQQPE----KRTITPREARAVFKNISSGDVRLLGLSNEYARPEWMI 231

Query: 246  LQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
            + VLP+PPPPV             R  DDLT++LA I+R N+N+ R + +G   H + EF
Sbjct: 232  ITVLPVPPPPVRPSVLVGGSGTNQRGEDDLTYKLAEIVRANQNVARCQADGM-GHGLHEF 290

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
              LLQ+HIATY DN++ GQP+A Q+S RP+K+I  RLK KEGR+R NLMGKRVDFSARTV
Sbjct: 291  EALLQYHIATYMDNDIAGQPKAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTV 350

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
            IT DP +++D++GVP SIA  LTY E VTPYNI +L  LVE GP   PG   AKYIIR  
Sbjct: 351  ITGDPNLSLDEVGVPISIAKTLTYTEIVTPYNINKLAALVENGPDIHPG---AKYIIRPT 407

Query: 413  GQRLDLRYLKKSSDHH--LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
            G++++L + K  +     L+ G+KVERH+ DGD +LFNRQPSLHK S+M H++++MPYST
Sbjct: 408  GEKINLGFNKGQAQGRAMLQYGFKVERHIQDGDVILFNRQPSLHKESMMAHKVRVMPYST 467

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNLSVT+PYNADFDGDEMN+HVPQS E++AE+ EL +VP  IVSPQ N P+MGIVQDT
Sbjct: 468  FRLNLSVTTPYNADFDGDEMNLHVPQSEESKAELRELALVPLNIVSPQRNGPLMGIVQDT 527

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            L G  KI +RDTF+ KD  MNI+MW  D+DG +PQP ILKPRP WTGKQ+ ++++P  +N
Sbjct: 528  LCGIYKICRRDTFLTKDHVMNIMMWVPDWDGVIPQPAILKPRPRWTGKQIISMVLPSGLN 587

Query: 591  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
            L R     A   +      D  V I  GEL+ G   KKT+G + G +IH I+ E G D A
Sbjct: 588  LLRLDKDGAPLAERFSPLKDGGVFIHGGELMFGQFSKKTVGATGGGVIHTIFNEYGSDVA 647

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
              F    Q +VNYWLL N FSIGIGDTI DA T+  I + +   K  V ++   A   +L
Sbjct: 648  MSFFNGAQRVVNYWLLHNGFSIGIGDTIPDAATVAKIEEAVRDRKEEVDDITDDATRNAL 707

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            +P PG  + E+FE+KV++ LN ARD+AG+  +KSL + N+   M  +GSKGS INISQM 
Sbjct: 708  DPLPGMNIRETFESKVSRALNNARDDAGNVTEKSLKDCNHGVQMARSGSKGSTINISQMM 767

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GRE
Sbjct: 768  AIVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGRE 827

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGDVIQF+YGEDG+D   IE+Q 
Sbjct: 828  GLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQFIYGEDGLDGAHIENQR 887

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            +D +      F + FR +  +  ++ +  L E+  ++    E +   D E ++L+ DR  
Sbjct: 888  VDVITCSDERFKQRFRVDFMDPEYSISPDLLEHSKEIADDIEAQKYLDEEWEQLQKDRDF 947

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L T +    +    LP+N++R++  A+ TF++     SD+HP EV+  V +L +RL +V 
Sbjct: 948  LRT-VCKEDEEMMQLPINVQRILETAKTTFRIQEGTISDLHPSEVIPQVRELLDRLVIVR 1006

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+D +S EAQ+NATL F   LRS  A +R++ E+ L + A + V+G IE+RF +++  PG
Sbjct: 1007 GDDIISREAQENATLLFMCQLRSRLAFRRLVVEYSLNKLALQHVLGAIENRFARAVANPG 1066

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVAK IKTPS++V+  
Sbjct: 1067 EMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKNIKTPSMTVYQV 1126

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            P +   +E  K ++  +E+TTLRSV E  E++YDPD   T+IE D + V+SY+ +P ED+
Sbjct: 1127 PELAGNQEAVKYLRSKVEHTTLRSVAETVEIYYDPDIRNTVIEADRDMVESYFIIP-EDV 1185

Query: 1191 --APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
               PE  S WL+R+ L+   ++DK L++  VA++I   + +D+T +F+DDN+D+ ++RIR
Sbjct: 1186 QDKPEDQSQWLIRLVLSHVKLIDKGLTVQDVADRIKSVYKNDITVMFSDDNSDQPVIRIR 1245

Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---------------------- 1286
               +     E   +  E D FLK  + +ML    LRGV                      
Sbjct: 1246 PYKEALSDEEDESDGGEMDYFLKIFQQHMLDGCTLRGVPGVERAFINEKTHARIMSDGSL 1305

Query: 1287 -------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
                               +L AV+  + VDA RT SN  IEI+EV GIEA R ALL EL
Sbjct: 1306 RKSAEDPLCKEWILETSGSSLAAVLAIDGVDASRTYSNQFIEILEVFGIEATRTALLREL 1365

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
              V++FDGSYVN+RHLA+L D MT RG LMA+TRHGINR DTG +MRCSFEETV+ILL+A
Sbjct: 1366 TQVLAFDGSYVNHRHLALLIDIMTSRGFLMAVTRHGINRADTGALMRCSFEETVEILLEA 1425

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEG-------- 1439
            A FAE D  RGV+EN++LGQ+AP GTG+  +YL+  ML   +       ME         
Sbjct: 1426 AAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQNMLMGVVSTNAGLGMEAGDARGSML 1485

Query: 1440 LEFGMTP--ARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQ-FSPYVGGMAFSPTSSP 1496
             E   TP  A SP+  + Y  GM  P   FSP  + S     Q F+ Y G         P
Sbjct: 1486 AEGAATPYDAGSPLQESMYV-GMGDPDSKFSPIRQTSGGETPQGFTDYAG---------P 1535

Query: 1497 GYSPSSPGYSPSSPGYSPTSP-------GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            G+   SPG + S  GYSPTSP            S GYSPTSPG   TSP +  +SPG+SP
Sbjct: 1536 GFGGYSPGGARSPGGYSPTSPFSTSPTSPSYSPSSGYSPTSPGIGITSPRFM-ASPGFSP 1594

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
             SP+++PTSP+YSPTSP ++  +   SPTSPSYSPTSP +SPTSPSYSPTSPS+SPTSPA
Sbjct: 1595 ASPSFAPTSPAYSPTSPGFAAGA---SPTSPSYSPTSPGFSPTSPSYSPTSPSFSPTSPA 1651

Query: 1610 YSPTSPAYSPTSPAY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
            +SPTSP+YSPTSPA    T    SPT    SPTSP Y+PTSP +SPTSP 
Sbjct: 1652 FSPTSPSYSPTSPALGGATGRHLSPT----SPTSPRYTPTSPGWSPTSPG 1697



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/183 (40%), Positives = 96/183 (52%), Gaps = 40/183 (21%)

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1638
             P +   SP  + +   YSPTSP  +  +      S  YSPTSP    TSP +   SP +
Sbjct: 1534 GPGFGGYSPGGARSPGGYSPTSPFSTSPTSPSYSPSSGYSPTSPGIGITSPRFM-ASPGF 1592

Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP-------------------- 1678
            SP SPS++PTSP+YSPTSP ++  +   SPTSP YSPTSP                    
Sbjct: 1593 SPASPSFAPTSPAYSPTSPGFAAGA---SPTSPSYSPTSPGFSPTSPSYSPTSPSFSPTS 1649

Query: 1679 -SYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPT 1737
             ++SPTSP+YSPTSP+    + ++                SP SPTSP Y+PTS  +SPT
Sbjct: 1650 PAFSPTSPSYSPTSPALGGATGRH---------------LSPTSPTSPRYTPTSPGWSPT 1694

Query: 1738 SPS 1740
            SP 
Sbjct: 1695 SPG 1697



 Score =  109 bits (273), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/171 (46%), Positives = 103/171 (60%), Gaps = 18/171 (10%)

Query: 1593 SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1652
             P +   SP  + +   YSPTSP  +  +      S  YSPTSP    TSP +   SP +
Sbjct: 1534 GPGFGGYSPGGARSPGGYSPTSPFSTSPTSPSYSPSSGYSPTSPGIGITSPRFM-ASPGF 1592

Query: 1653 SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSL------- 1705
            SP SPS++PTSPAYSPTSPG++  +   SPTSP+YSPTSP ++P S  YSP+        
Sbjct: 1593 SPASPSFAPTSPAYSPTSPGFAAGA---SPTSPSYSPTSPGFSPTSPSYSPTSPSFSPTS 1649

Query: 1706 -AYSPSSPRLSPASPY--SPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
             A+SP+SP  SP SP     T  + SPTS    PTSP Y+P+SP +SP+SP
Sbjct: 1650 PAFSPTSPSYSPTSPALGGATGRHLSPTS----PTSPRYTPTSPGWSPTSP 1696



 Score = 62.4 bits (150), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 74/141 (52%), Gaps = 34/141 (24%)

Query: 1670 SPGYSPTSPSYSPTSPTYSPTSP-SYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYS 1728
             PG+   SP  + +   YSPTSP S +P S  YSPS  YSP+SP +   SP    SP +S
Sbjct: 1534 GPGFGGYSPGGARSPGGYSPTSPFSTSPTSPSYSPSSGYSPTSPGIGITSPRFMASPGFS 1593

Query: 1729 PTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-------------- 1774
            P S S++PTSP+YSP+SP ++  +           SP+SP YSP++              
Sbjct: 1594 PASPSFAPTSPAYSPTSPGFAAGA-----------SPTSPSYSPTSPGFSPTSPSYSPTS 1642

Query: 1775 --------GYSPSAPGYSPSS 1787
                     +SP++P YSP+S
Sbjct: 1643 PSFSPTSPAFSPTSPSYSPTS 1663


>gi|336276273|ref|XP_003352890.1| hypothetical protein SMAC_05005 [Sordaria macrospora k-hell]
 gi|380093009|emb|CCC09246.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1761

 Score = 1588 bits (4112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 870/1783 (48%), Positives = 1161/1783 (65%), Gaps = 158/1783 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            F +S A +  V+ +QFG+LSP+EI+ MSV  I + ET +  R KP+ GGL+DP LG++DR
Sbjct: 6    FAHSSAPLRTVKEIQFGLLSPEEIKSMSVAHIVYPETMDETRTKPRDGGLNDPLLGSVDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TCT NM+ECPGHFGH+ELA+P++H GF+K V  I+  VC NCSK+LAD +D +F 
Sbjct: 66   QFKCKTCTENMSECPGHFGHIELARPVYHPGFIKRVKKILEIVCHNCSKVLADRNDKEFA 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKKNKG------GCGAQQ 175
             A+KIR+PK R  ++   CK K +C+  +E+     D E  PL   KG      GCG   
Sbjct: 126  AAMKIRDPKVRFNRVWAVCKKKRRCD--NEVIKKSDDDEFNPLADAKGELPGHGGCGNDH 183

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P +  + + + A++  +     D+E +    + K+ +T E  L +L  +S+ D   +G+N
Sbjct: 184  PTVRQQALTLYAQFDTK-----DEEGVK--TKEKKIITPEMALTILHNMSESDMIDIGVN 236

Query: 236  PKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERN 282
               ARP+WMI+ V             +      +R  DDLT++L  IIR N N+R+  + 
Sbjct: 237  ISQARPEWMIVTVLPVPPPPVRPSISMDGTGTGLRNEDDLTYKLGDIIRANGNVRQAIQE 296

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+PAHII +F  LLQ+H+ATY DN++ GQP+A Q+SGRP+K+I +RLK KEGR+RGNLMG
Sbjct: 297  GSPAHIIHDFEGLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMG 356

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT D  I++D++GVP SIA  LTYPETVTPYNI +L + V+ GP+  PG 
Sbjct: 357  KRVDFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPYNIGKLTQYVQNGPNEHPG- 415

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              AKY+IR DG R+DLR+ +++    LE G+KVERHL DGD+++FNRQPSLHK S+MGHR
Sbjct: 416  --AKYVIRSDGSRVDLRHQRRTGPLQLEYGWKVERHLIDGDYIIFNRQPSLHKESMMGHR 473

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL MVP  IVSPQ N P
Sbjct: 474  VKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNGP 533

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            +MGIVQDTL G  K+ +RD F+ K+  MN+++W  ++DG +P P ILKPRP WTGKQ+ +
Sbjct: 534  LMGIVQDTLAGAYKLCRRDVFLTKEEVMNVMLWVPEWDGIIPIPAILKPRPRWTGKQIIS 593

Query: 583  LIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            ++IPK INL      + D D G     D  + I++GE++ G + KK +G ++G +IH+ +
Sbjct: 594  MVIPKIINL-----KNLDEDDGECPLKDKGILIQQGEVIFGLMTKKIVGAASGGIIHLCY 648

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E+GP  A  FL   Q +VNYWLL N  SIGIGDTI DA T+  +   I  AK  VK L 
Sbjct: 649  NELGPSGAMDFLNGCQRVVNYWLLHNGHSIGIGDTIPDAATIAKVQTHIDDAKAEVKMLT 708

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
             QA +  LEP PG  + E+FENKV++ LNTARD+AG++ + SL + NN   M  +GSKGS
Sbjct: 709  DQATNNELEPLPGMNIRETFENKVSKALNTARDKAGTTTEGSLKDLNNAVTMALSGSKGS 768

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
             INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFF
Sbjct: 769  SINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFF 828

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED   +YDGTVRNSLGD+IQF+YGEDG+D
Sbjct: 829  FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDSAAQYDGTVRNSLGDIIQFVYGEDGLD 888

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
             + IE+Q++D   +    FDK +R + MDEE  +      EY  ++ +   ++++ D E 
Sbjct: 889  GIAIENQSVDHFTISNKAFDKRYRLDVMDEEVSSGELEALEYGKEITSDPTVQELLDQEY 948

Query: 942  QKLEADRYQLATEIATSG--DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
            ++L  DR  L       G  D+   LP+N+ R+I  A+K FKVD    SD+ P +V+  V
Sbjct: 949  EQLTVDRQMLRVIQRRKGNNDTKMQLPLNIIRIIDTAKKLFKVDETARSDLTPKDVIPLV 1008

Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
              + +R+ VV G+DP+S EA  NAT+ F   LRS  A KR+  + R+ + AF  ++GE+E
Sbjct: 1009 KAMLDRMIVVRGDDPISKEADYNATILFKAQLRSRLAFKRLAVQDRINKLAFNHILGELE 1068

Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
            +R+ +S+V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA  
Sbjct: 1069 NRWSRSMVSPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVASN 1128

Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
            IKTPS+ V+L     +T+E AK ++ A+E+T+LRSVT  TE++YDPD   T I ED + V
Sbjct: 1129 IKTPSMMVYLDSNA-ATQEEAKKMRSAVEHTSLRSVTAVTEIYYDPDIQSTNIPEDYDLV 1187

Query: 1180 KSYYEMPDEDIAP----EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIF 1235
            +SY+ +PD+        E  S WLLRI L+R+ M+DK L +  VA +I + +  D+  +F
Sbjct: 1188 ESYFLIPDQSGDEPDPIENQSRWLLRITLDRQKMLDKGLRVEDVAHRIKEVYKKDVAVVF 1247

Query: 1236 NDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------- 1286
            +D+NA+++++RIR++  +  K E  ++  EDDV LK++E ++L    LRGV         
Sbjct: 1248 SDNNAEEMVIRIRVIKADDDKDEDGNKIIEDDVMLKRLEKHLLDGCTLRGVEGIERAFLN 1307

Query: 1287 --------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVL 1314
                                            +L  V+  E VD +RTT+N L ++++V 
Sbjct: 1308 KGVKLIEAKDGSMKHSKVDDDCQEWYLDTQGTSLREVLTVEGVDTKRTTTNDLWQVVDVF 1367

Query: 1315 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
            GIE  R AL+ EL  V++FDGSYVN+RHLA+LCD MTYRG + A+TRHGINR DTG +MR
Sbjct: 1368 GIEGARAALMHELTAVLAFDGSYVNHRHLALLCDVMTYRGSIAAVTRHGINRADTGALMR 1427

Query: 1375 CSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLP 1434
            CSFEETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG   + L+ +ML+  I     
Sbjct: 1428 CSFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGAFDVLLDPKMLETVIS---D 1484

Query: 1435 SYMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYL--FSPNLRLSPVTDAQFSPYVGGM 1488
            +   GL  GMT   S + G  TPY  G  M   G+L  +SP +         FSP  G  
Sbjct: 1485 NSRMGLMPGMTVKGSQLDGAATPYDTGSPMADSGFLGSYSPTM-------GNFSPIQGAG 1537

Query: 1489 AFSPTSSP-GYSPSSPGYSPSSPGYS------PTSPGYSPTSP----GYSPTSPGYSPTS 1537
            + SPT++  G          S   YS       TSP ++PTSP    GYSP+SP    + 
Sbjct: 1538 SDSPTNNGFGTDYGGVSGYGSGTSYSSATSPRATSP-FTPTSPFSYGGYSPSSPAAGYSP 1596

Query: 1538 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSP--------------------TSPSYSP 1577
             +    S G   +SP +SP+SPS+SPTSP   P                     +  YSP
Sbjct: 1597 SSPLLDSSGRFASSPQFSPSSPSFSPTSPMLRPGSPTSPSYSPTSPSYSPASPAAARYSP 1656

Query: 1578 TSPSYS----------------PTSPSYSPTSPSYSPTSPSYSPTSP-AYSPTSPAYSPT 1620
            TSP+                  P SP++  TSPSYSP SP++SPTSP AYSPTSP++  +
Sbjct: 1657 TSPAQQFSPTSPSYSPTSPSYSPASPAFQATSPSYSPASPTWSPTSPDAYSPTSPSFQRS 1716

Query: 1621 -SPAYSPTSPS-YSPTSPSYSPTSPSYSPT---SPSYSPTSPS 1658
                 SP SP+ YSPTSP YSP +P  + +     SYSPTSPS
Sbjct: 1717 PGQQLSPNSPTGYSPTSPQYSPRTPGRNNSGGNGDSYSPTSPS 1759



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 87/238 (36%), Positives = 117/238 (49%), Gaps = 51/238 (21%)

Query: 1581 SYSPTSPSYSPT--SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS-YSPTSP- 1636
            SYSPT  ++SP   + S SPT+  +  T         + +  S A SP + S ++PTSP 
Sbjct: 1522 SYSPTMGNFSPIQGAGSDSPTNNGFG-TDYGGVSGYGSGTSYSSATSPRATSPFTPTSPF 1580

Query: 1637 ---SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP----------- 1682
                YSP+SP+   +  S    S     +SP +SP+SP +SPTSP   P           
Sbjct: 1581 SYGGYSPSSPAAGYSPSSPLLDSSGRFASSPQFSPSSPSFSPTSPMLRPGSPTSPSYSPT 1640

Query: 1683 ---------TSPTYSPTSPSYN----------PQSAKYSPSLAYSPSSPRLSPASP-YSP 1722
                      +  YSPTSP+               +    S A+  +SP  SPASP +SP
Sbjct: 1641 SPSYSPASPAAARYSPTSPAQQFSPTSPSYSPTSPSYSPASPAFQATSPSYSPASPTWSP 1700

Query: 1723 TSPN-YSPTSSSY--------SPTSPS-YSPSSPTYSPSSP--YNAGGGNPDYSPSSP 1768
            TSP+ YSPTS S+        SP SP+ YSP+SP YSP +P   N+GG    YSP+SP
Sbjct: 1701 TSPDAYSPTSPSFQRSPGQQLSPNSPTGYSPTSPQYSPRTPGRNNSGGNGDSYSPTSP 1758



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 81/238 (34%), Positives = 112/238 (47%), Gaps = 56/238 (23%)

Query: 1616 AYSPTSPAYSPT--SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP-- 1671
            +YSPT   +SP   + S SPT+  +       S      S +S +    +  ++PTSP  
Sbjct: 1522 SYSPTMGNFSPIQGAGSDSPTNNGFGTDYGGVSGYGSGTSYSSATSPRATSPFTPTSPFS 1581

Query: 1672 --GYSPTSPSYS-PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP--------- 1719
              GYSP+SP+     S     +S  +         S ++SP+SP L P SP         
Sbjct: 1582 YGGYSPSSPAAGYSPSSPLLDSSGRFASSPQFSPSSPSFSPTSPMLRPGSPTSPSYSPTS 1641

Query: 1720 ------------YSPTSP----------------NYSPTSSSYSPTSPSYSPSSPTYSPS 1751
                        YSPTSP                +YSP S ++  TSPSYSP+SPT+SP+
Sbjct: 1642 PSYSPASPAAARYSPTSPAQQFSPTSPSYSPTSPSYSPASPAFQATSPSYSPASPTWSPT 1701

Query: 1752 SPYNAGGGNPDYSPSSP--QYSPSAGYSPSAP-GYSPSSTSQYTPQT-NRDDSTTKDD 1805
            SP         YSP+SP  Q SP    SP++P GYSP+S  QY+P+T  R++S    D
Sbjct: 1702 SP-------DAYSPTSPSFQRSPGQQLSPNSPTGYSPTS-PQYSPRTPGRNNSGGNGD 1751


>gi|402086759|gb|EJT81657.1| hypothetical protein GGTG_01635 [Gaeumannomyces graminis var. tritici
            R3-111a-1]
          Length = 1765

 Score = 1585 bits (4103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 873/1790 (48%), Positives = 1155/1790 (64%), Gaps = 173/1790 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            F  S A +  +  +QFG+LSP+E + MSV  I++ E  +  R KP+ GGL+DP LG++DR
Sbjct: 6    FEPSSAPLKTIEEIQFGVLSPEETKNMSVAHIQYPEAMDDTRTKPREGGLNDPLLGSVDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADED-DHKF 121
            + KC+TC  +M+ECPGHFGH+ELAKP++H GF+K    I+  VC  C K+L D+D D  F
Sbjct: 66   QFKCKTCNNSMSECPGHFGHIELAKPVYHPGFIKKTKKILEMVCHECGKLLCDKDNDEGF 125

Query: 122  KQALKIRNPKNRLKKILDACKNKTKCE------GGDEIDVPGQDGEEPLKKN-----KGG 170
              A++ R+PK R  ++   CK+K  CE      GGD      +DG E  K        GG
Sbjct: 126  LDAIRTRDPKVRFARVWAMCKDKKFCENETTKKGGD------KDGFESSKPQVTKVPHGG 179

Query: 171  CGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQ 230
            CG+  P +  + + + A  K +    +D+E   +   + + +T E    VLK+IS+ED  
Sbjct: 180  CGSAHPNIRQKALALFARVKGE---TNDEETAQKKEIKDKPITPETAHAVLKKISEEDMW 236

Query: 231  LLGLNPKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLR 277
             +GLN  YARP+W+I+ V             +      +R  DDLT++L  IIR N N++
Sbjct: 237  NMGLNKDYARPEWLIVTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVK 296

Query: 278  RQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIR 337
            +  ++GAPAHI  EF +LLQ+H+ATY DN++   PR+ Q+SGRP+KSI +RLK KEGR+R
Sbjct: 297  QAIQDGAPAHICLEFEELLQYHVATYMDNDIASVPRSLQKSGRPVKSIRARLKGKEGRLR 356

Query: 338  GNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPH 397
            GNLMGKRVDFSARTVIT D  I++D++GVP SIA  L+YPETVTPYNI RL + V  GP+
Sbjct: 357  GNLMGKRVDFSARTVITGDANISLDEVGVPRSIARTLSYPETVTPYNISRLHQYVANGPN 416

Query: 398  PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 457
              PG   AKY+IR DG R+DLR++K  +   LE G+KVERHL  GD+++FNRQPSLHK S
Sbjct: 417  EHPG---AKYVIRSDGSRIDLRHVKGRNGISLEYGWKVERHLLTGDYIIFNRQPSLHKES 473

Query: 458  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 517
            +MGHR+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV  L MVP  IVSP
Sbjct: 474  MMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVRGLCMVPLNIVSP 533

Query: 518  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTG 577
            Q N P+MGIVQDTL GC K+ +RD F+ K+  MNI++W  D+DG +P P IL+PRP WTG
Sbjct: 534  QRNSPLMGIVQDTLAGCYKLCRRDVFLTKEHVMNIMLWVPDWDGIIPMPCILRPRPRWTG 593

Query: 578  KQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSL 637
            KQ+ ++IIPK +        H  ND   L   DTL+ I+ GEL+ G L KK +G S+G +
Sbjct: 594  KQIISMIIPKFVTT------HTGNDFNPLN-DDTLM-IQSGELMYGLLTKKNVGASSGGI 645

Query: 638  IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNN 697
            IH+ + E GPD+A  FL   Q +VNY LL    SIGIGDTI D +T+  I   I++ K  
Sbjct: 646  IHICYNEQGPDSAMAFLNGCQRVVNYMLLHYGHSIGIGDTIPDQETIAKIQAHITEQKTE 705

Query: 698  VKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTA 757
            V  L + A   +LE  PG  + E+FE+KV++ LNTAR++AG++ +KSL + NN   M  +
Sbjct: 706  VAELTQAATTNTLEALPGMNIRETFESKVSKALNTAREKAGTTTEKSLKDLNNAVTMSRS 765

Query: 758  GSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLT 817
            GSKGS INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLT
Sbjct: 766  GSKGSAINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLT 825

Query: 818  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 877
            P EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  KYDGTVRNSLGD+IQF+YG
Sbjct: 826  PTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVSAKYDGTVRNSLGDIIQFVYG 885

Query: 878  EDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVF 937
            EDG+D + IE Q +D L   +++FD  F+ ++  E+   +    EY +++      + + 
Sbjct: 886  EDGLDGMHIEKQKMDHLNCSQAQFDAMFKMDVMSESRTNDLNALEYGNEIFGDAVAQQLL 945

Query: 938  DAEVQKLEADRYQLATEI--ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEV 995
            DAE + +  DR ++   I      D+   LP+N+ R+I NA+K F++D  + SD+ P +V
Sbjct: 946  DAEYEAVLEDR-KIVRRINYKKKDDNDMQLPLNVNRVIENAKKLFRLDSAQRSDLRPQDV 1004

Query: 996  VEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVI 1055
            + AV     R+ VV G+D +S EA  N+++ F   LRS  + KR+    RL++ AF+ V+
Sbjct: 1005 IPAVQGFLSRMVVVRGDDEISKEADYNSSILFKAQLRSRLSFKRLAVRERLSKIAFDHVV 1064

Query: 1056 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1115
            GE+ESR+ +S+++PGEM+G +AAQSIGEPATQMTLNTFH+ G+S+KNVTLGVPRL+EI+N
Sbjct: 1065 GEMESRWQRSMISPGEMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLGVPRLKEILN 1124

Query: 1116 VAKKIKTPSLSVFLKPGV--NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIE 1173
            V+K IKTP + V L P       +E AK ++  +E+T LRSV+  TE++YDP+   T IE
Sbjct: 1125 VSKDIKTPGMIVRLDPDFYPEPIQEHAKTLRSLVEHTNLRSVSAMTEIYYDPEIRSTTIE 1184

Query: 1174 EDVEFVKSYYEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLT 1232
            ED + +  +Y +P+E    P+  S W+LR+ L+R+ M+DK L +  VA +I  E+ +DL 
Sbjct: 1185 EDQDTIDGHYLIPEESANEPDFQSRWVLRLTLDRQKMLDKGLRIEDVAARIKSEYSNDLV 1244

Query: 1233 CIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------ 1286
             I +D+NA + ++R+R +N ++ K + +    EDDV LK++ES+ML  + LRGV      
Sbjct: 1245 VIHSDNNAPEQVIRMRAVNTDSEK-DGDGGGIEDDVMLKRLESHMLDTLTLRGVPGIERA 1303

Query: 1287 -----------------------------------NLLAVMCHEDVDARRTTSNHLIEII 1311
                                               +L  V+  + VD  R+ +N L +I+
Sbjct: 1304 FLNKDTKLFVKPDGSLLNSKDAPECEEWYLDTQGTSLRPVLAVDGVDRVRSGTNDLHQIV 1363

Query: 1312 EVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP 1371
            E+LGIEA R ALL EL  V++FDGSYVN+RHLA+L D MTYRG + A+TRHGINR DTG 
Sbjct: 1364 EMLGIEAARTALLGELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGA 1423

Query: 1372 MMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL 1431
            +MRCSFEETV+ILL+AA   E D  RG++EN+MLGQLAP+GTG   + L+ +ML   I  
Sbjct: 1424 LMRCSFEETVEILLEAASIGELDDCRGISENVMLGQLAPMGTGAFDVLLDPKMLDTVIS- 1482

Query: 1432 QLPSYMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYLFSPNLRLSPVTDAQFSPYVGG 1487
               +   GL  G+T   S   G  TPY  G  M   GY     L +   T   FSP V G
Sbjct: 1483 --DNSRMGLMPGLTIKGSQAEGAATPYDTGSPMADSGY-----LGMGSPTMGSFSPIVSG 1535

Query: 1488 MAFSPTS-SPGY--------SPSSPGYSP--SSP-GYSPTSP-------GYSPTSP--GY 1526
             + SP+     Y        +P   G SP  +SP   SPTSP        YSP SP  GY
Sbjct: 1536 GSDSPSGFETAYGDPFRGLNTPYGAGASPRATSPFSTSPTSPFSANYGGSYSPASPGAGY 1595

Query: 1527 SPTSP--------------------------GY---SPTSPTYSPSSPGYSPTSPA---- 1553
            SP+SP                          G+   +PTSP+YSP+SPGYSP SP+    
Sbjct: 1596 SPSSPMLDMSGRYASSPSFSPSSPSFSPSSPGFRATNPTSPSYSPTSPGYSPASPSGGGA 1655

Query: 1554 --YSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTS 1607
              YSPTSP+   SPTSPSYSP SP YSP SP+   TSP+YSP SP +SPTSP  +YSPTS
Sbjct: 1656 KHYSPTSPNQFNSPTSPSYSPVSPGYSPASPNLHATSPNYSPASPKWSPTSPTGAYSPTS 1715

Query: 1608 PAYSPTSPA--YSPTSPAYSPTSPSYSPTSP---SYSPTSPSYSPTSPSY 1652
            PA    SPA   SPTSP YSP+SP++SP +P          SYSPTSP +
Sbjct: 1716 PALH-RSPAQNQSPTSPGYSPSSPTFSPRTPGGRGAGGNQDSYSPTSPGH 1764



 Score =  119 bits (298), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 134/257 (52%), Gaps = 43/257 (16%)

Query: 1555 SPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPAYS 1611
            SPT  S+SP  +  S SP+    +   P     +P  +  SP    TSP S SPTSP  +
Sbjct: 1523 SPTMGSFSPIVSGGSDSPSGFETAYGDPFRGLNTPYGAGASPR--ATSPFSTSPTSPFSA 1580

Query: 1612 PTSPAYSPTSPA--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPAYS 1667
                +YSP SP   YSP+SP     S  Y+ +      +      +    + +PTSP+YS
Sbjct: 1581 NYGGSYSPASPGAGYSPSSPMLD-MSGRYASSPSFSPSSPSFSPSSPGFRATNPTSPSYS 1639

Query: 1668 PTSPGYSPTSPS------YSPTSPTY--SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
            PTSPGYSP SPS      YSPTSP    SPTSPSY+P S        YSP+SP L     
Sbjct: 1640 PTSPGYSPASPSGGGAKHYSPTSPNQFNSPTSPSYSPVSP------GYSPASPNLHA--- 1690

Query: 1720 YSPTSPNYSPTSSSYSPTSP--SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP----- 1772
               TSPNYSP S  +SPTSP  +YSP+SP    S   N    +P YSPSSP +SP     
Sbjct: 1691 ---TSPNYSPASPKWSPTSPTGAYSPTSPALHRSPAQNQSPTSPGYSPSSPTFSPRTPGG 1747

Query: 1773 -SAG-----YSPSAPGY 1783
              AG     YSP++PG+
Sbjct: 1748 RGAGGNQDSYSPTSPGH 1764



 Score = 80.5 bits (197), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 90/168 (53%), Gaps = 17/168 (10%)

Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
            SPT  S+SP     S  SPS   T+    P     +P   G SP + S   TSPT SP S
Sbjct: 1523 SPTMGSFSPIVSGGS-DSPSGFETAYG-DPFRGLNTPYGAGASPRATSPFSTSPT-SPFS 1579

Query: 1692 PSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSS---------SYSPTSPSYS 1742
             +Y    +  SP   YSPSSP L  +  Y+ +      + S         + +PTSPSYS
Sbjct: 1580 ANYGGSYSPASPGAGYSPSSPMLDMSGRYASSPSFSPSSPSFSPSSPGFRATNPTSPSYS 1639

Query: 1743 PSSPTYSPSSPYNAGGGNPDYSPSSPQY--SPSA-GYSPSAPGYSPSS 1787
            P+SP YSP+SP  +GGG   YSP+SP    SP++  YSP +PGYSP+S
Sbjct: 1640 PTSPGYSPASP--SGGGAKHYSPTSPNQFNSPTSPSYSPVSPGYSPAS 1685


>gi|401626472|gb|EJS44418.1| rpo21p [Saccharomyces arboricola H-6]
          Length = 1726

 Score = 1583 bits (4099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 822/1583 (51%), Positives = 1089/1583 (68%), Gaps = 97/1583 (6%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
            YS A +  V+ VQFG+ SP+E+R +SV +I   ET +  + + K GGL+DPRLG+IDR +
Sbjct: 6    YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC   M ECPGHFGH++LAKP+FH+GF+  +  +   VC +C K+L DE +   +QA
Sbjct: 66   KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            L I++ K R   I   CK K  CE     DVP ++    L  ++GGCG  QP +  +G+K
Sbjct: 126  LAIKDSKKRFAAIWTLCKTKMVCE----TDVPSENDPTQLV-SRGGCGNTQPTVRKDGLK 180

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            ++  +K  R   D  E  PE     + L+ E +L + K IS +D   LG N  ++RP+WM
Sbjct: 181  LVGSWKKDRATGDADE--PEL----RVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWM 234

Query: 245  ILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            IL  LP+PPPPV          R  DDLT +LA I++ N +L   E NGAP H I E   
Sbjct: 235  ILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAES 294

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+
Sbjct: 295  LLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS 354

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + +DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD G 
Sbjct: 355  GDPNLELDQVGVPRSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDSGD 411

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLN
Sbjct: 412  RIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLN 471

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G 
Sbjct: 472  LSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGI 531

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK+T RDTFIE D  +N+L W  D+DG +P P I+KP+PLW+GKQV ++ IP  I+L R 
Sbjct: 532  RKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQVLSVAIPNGIHLQRF 591

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
                 D    +L+  D  + I  G+++ G + KKT+G+S G LIHV+  E GP    K  
Sbjct: 592  -----DEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLF 646

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
            G+ Q +VN+WLL N FS GIGDTIAD  TM  I +TI++AK  V ++ K+AQ   L  + 
Sbjct: 647  GNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKH 706

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G T+ ESFE+ V + LN ARD+AG  A+ +L + NN+K MV AGSKGSFINI+QM+ACVG
Sbjct: 707  GMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG 766

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 767  QQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLID 826

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDGMD+  IE Q+LD++
Sbjct: 827  TAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTI 886

Query: 895  KMKKSEFDKAFRFEMDEENWNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQKLEA 946
                + F++ +R ++     NP+++L         E + DLK    L+ + D E ++L  
Sbjct: 887  GGSDAAFERRYRIDL----LNPDHILDPSLLESGSEILGDLK----LQVLLDEEYKQLVK 938

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR  L  ++   G+++WP+PVN++R+I NAQ+TF +D  +PSD+   ++V  V  LQ+ L
Sbjct: 939  DRMFL-RQVFVDGEANWPMPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVIGVKDLQDNL 997

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             V+ G++ +   AQ++A   F  LLRS  A++RVL+E++L+++AFEWV+  +E++FL+S+
Sbjct: 998  LVLRGKNEIIQNAQQDAVTLFCCLLRSRLATRRVLQEYKLSKQAFEWVLSNVEAQFLRSV 1057

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
            V PGEM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+
Sbjct: 1058 VHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLT 1117

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            V+L+PG  + +E+AK ++ A+E+TTL+SVT A+E++YDPDP  T+I ED E ++ ++ + 
Sbjct: 1118 VYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLL 1177

Query: 1187 DEDIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            D++     ++ SPWLLR+EL+R  M DK L+M  V E+I Q F +DL  I+++DN +KLI
Sbjct: 1178 DDEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLI 1237

Query: 1245 LRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------------- 1284
            +R R++    PK    +  AE+D  LKKIE+ ML  + LR                    
Sbjct: 1238 IRCRVVR---PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSP 1294

Query: 1285 ---------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
                           GVNL  VM    +D  R  +N  I+I+EVLGIEA R AL  E+  
Sbjct: 1295 TGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYN 1354

Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
            VI+ DGSYVNYRH+A+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A  
Sbjct: 1355 VIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGA 1414

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMTPAR 1448
             AE D  RGV+EN++LGQ+APIGTG   + +++E ++K   E ++    +G + G TP  
Sbjct: 1415 SAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITGIEDGQDGGATPY- 1473

Query: 1449 SPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQ---FSPYVG---GMAFSPTSSPGYSPSS 1502
            S  SG    D  +    +FSP L  S   DA    F+ Y G   G A SP  + G +P+S
Sbjct: 1474 SNESGLVNADLDVKDELMFSP-LVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTS 1532

Query: 1503 PGYSPSSPGYSPTSPGYSPTSPG 1525
            PG+  SSPG+SPTSP YSPTSP 
Sbjct: 1533 PGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 43.9 bits (102), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 22/27 (81%)

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
            +PTSP +  +SP +SPTSP YSPTSPA
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 42.0 bits (97), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 21/27 (77%)

Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
            +PTSP +  +SP +SPTSP YSPTSP 
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555



 Score = 41.6 bits (96), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 22/64 (34%)

Query: 1652 YSPTSPSYS------------------PTSP--AY--SPTSPGYSPTSPSYSPTSPTYSP 1689
            +SP   S S                   TSP  AY  +PTSPG+  +SP +SPTSPTYSP
Sbjct: 1492 FSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSP 1551

Query: 1690 TSPS 1693
            TSP+
Sbjct: 1552 TSPA 1555


>gi|389631979|ref|XP_003713642.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
            70-15]
 gi|351645975|gb|EHA53835.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
            70-15]
          Length = 1757

 Score = 1583 bits (4099), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 887/1808 (49%), Positives = 1168/1808 (64%), Gaps = 173/1808 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            F  S A +  +  +QFG+L+P+EI+ MSVV +++ +T +  R KP+ GGL+DP LGT DR
Sbjct: 6    FAPSSAPLKTIEEIQFGVLAPEEIKNMSVVHVQYPDTMDETRTKPREGGLNDPLLGTTDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADED-DHKF 121
            + KC+TC  +M  CPGHFGH+ELAKP++H GF+     I+  VC  CSK+L DE+ D +F
Sbjct: 66   QYKCKTCNNDMNNCPGHFGHIELAKPVYHPGFINKTKKILEMVCHQCSKLLCDENNDEQF 125

Query: 122  KQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPL-------KKNKGGCGAQ 174
             QAL++R+PK R   +  ACK K  CE    I+  G+D ++ +       K   GGCG+ 
Sbjct: 126  AQALRLRDPKARFAMVWKACKGKKVCE----IETGGKDEKDSIDTATGIEKVPHGGCGST 181

Query: 175  QPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGL 234
             P +  + +++ A+ +  R++   +E       + + +T E+   +LK I ++D   +GL
Sbjct: 182  HPDIRKKALQLYAKVEEAREEGMKKEV------KDKLITPEQAHHILKHIPEDDLWKMGL 235

Query: 235  NPKYARPDWMILQVLPIPPPP-------------VRPSDDLTHQLAMIIRHNENLRRQER 281
            N  YARP+W+I+ VLP+PPPP             +R  DDLT++L  IIR N N+++   
Sbjct: 236  NKDYARPEWLIVTVLPVPPPPVRPSISVDGTSQGMRSEDDLTYKLGDIIRANGNVKQAHA 295

Query: 282  NGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLM 341
             GAP HI +EF +LLQ+H+ATY DN++   PR+ Q+SGRPIKSI +RLK KEGR+RGNLM
Sbjct: 296  EGAPNHICTEFEELLQYHVATYMDNDIASIPRSLQKSGRPIKSIRARLKGKEGRLRGNLM 355

Query: 342  GKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPG 401
            GKRVDFSARTVIT D  I++ ++GVP SIA  LTYPETVTP+NI+RL + V  GP+  PG
Sbjct: 356  GKRVDFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVNGPNEHPG 415

Query: 402  KTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
               AKYI+R DG R+DLR++K      LE G KVERHL  GD+++FNRQPSLHK S+MGH
Sbjct: 416  ---AKYIVRTDGTRIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQPSLHKESMMGH 472

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
            ++++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL MVP  IVSPQ N 
Sbjct: 473  QVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNS 532

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
            P+MGIVQDTL G  K+ +RD F+ K+  M+I++W  D+DG +PQP IL+PRP WTGKQ+ 
Sbjct: 533  PLMGIVQDTLAGTYKLCRRDVFLTKEAVMDIMLWVPDWDGIIPQPAILRPRPRWTGKQII 592

Query: 582  NLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            +++IP  +   +   W+  ND  +L        I+ GEL+ G L KK +G ++G +IH+ 
Sbjct: 593  SMVIPDFVTTHQGGDWNPLNDDALL--------IQSGELMFGLLTKKNVGAASGGIIHIC 644

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E GP  A  FL   Q +VNYWLL N  SIGIGDTI D  T+E I   I++ K  V  L
Sbjct: 645  YNEQGPARAMAFLNGCQRVVNYWLLHNGHSIGIGDTIPDPVTIEKIQAHINEQKAEVAEL 704

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
               A    LE  PG  + E+FE+KV++ LNTAR++AG++ +KSL + NN   M  +GSKG
Sbjct: 705  TDLATTNRLEALPGMNIRETFESKVSKALNTAREKAGTTTEKSLKDINNAVTMSRSGSKG 764

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDD+ PE+RGFVENSYLRGLTP EF
Sbjct: 765  SSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDFSPEARGFVENSYLRGLTPSEF 824

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  KYDGTVRNSLGD+IQF+YGEDG+
Sbjct: 825  FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVAAKYDGTVRNSLGDIIQFIYGEDGL 884

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
            D + IE Q +D L +   +FD  ++ ++            EY +++     ++ + D E 
Sbjct: 885  DGMAIEKQKMDHLNISNGKFDGMYKLDLMTATRPRELNALEYGNEIFGDPAVQQLLDEEY 944

Query: 942  QKLEADRYQLATEI--ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
              ++ADR QL  EI      D+   LP+N+ R+I NA+K FK+D  + SD+ P +V+  V
Sbjct: 945  DAIKADR-QLIREINYKKKDDNDMQLPLNVARVIENAKKLFKIDDAQRSDLKPQDVIPVV 1003

Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
                ER+ VVPG+DP+S EA  N+++ F   LRS  A KR+    RL R AF+ VIGE+E
Sbjct: 1004 KGFLERMVVVPGDDPISKEANYNSSILFKAQLRSRLAFKRLAVRERLNRIAFDHVIGEME 1063

Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
            SR+ +S V+PGEM+G +AAQSIGEPATQMTLNTFH+ G+S+KNVTLGVPRL+EI+NV+ +
Sbjct: 1064 SRWQRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLGVPRLKEILNVSAE 1123

Query: 1120 IKTPSLSVFLKPGV--NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVE 1177
            IKTP + V L P +  +  +E AK ++  +E+T LRSVT  TE++YDP+   T I+ED +
Sbjct: 1124 IKTPGMVVRLDPKMYPDFKQENAKTLRSLVEHTNLRSVTAMTEIYYDPEIQTTTIDEDAD 1183

Query: 1178 FVKSYYEMPDE-DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
             ++ +Y +P+E    P   S WLLR+ L+R+ M+DK L +  VA  I   +  DL  + +
Sbjct: 1184 MLEGHYLIPEEHQDEPSNQSRWLLRLTLDRQKMLDKNLHIEDVAASIKGAYASDLVVVHS 1243

Query: 1237 DDNADKLILRIR--IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-------- 1286
            D+NAD+ ++R+R  I  DE  K   N ES   D  LK++E +ML  + LRG+        
Sbjct: 1244 DNNADEQVIRMRHVIKGDEEDKDGRNIES---DQILKRLEEHMLDGLTLRGIKGIERAFL 1300

Query: 1287 ---------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEV 1313
                                             +L  V+C + VD+ RT +N L +I+++
Sbjct: 1301 NKDTRLVVKPDGSLLNSKDAPECEEWYLDTQGTSLRQVLCVDGVDSVRTLTNDLYQIVDL 1360

Query: 1314 LGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMM 1373
            LGIEA R ALL EL  V++FDGSYVN+RHLA+L D MTYRG + A+TRHGINR DTG +M
Sbjct: 1361 LGIEAARTALLGELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALM 1420

Query: 1374 RCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQL 1433
            RCSFEETV+ILL+AA   E D  RG++EN+MLGQLAP+GTG   + L+ +ML+  +    
Sbjct: 1421 RCSFEETVEILLEAAAIGELDDCRGISENVMLGQLAPMGTGAFEVLLDPKMLETVVS--- 1477

Query: 1434 PSYMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYLFSPNLRLSPVTDAQFSPYVGGMA 1489
             +   GL  G+T   S   G  TPY  G  M   GY    NL ++  T   FSP + G +
Sbjct: 1478 NNARMGLMPGLTVKGSSAEGAATPYDTGSPMGDSGY----NLGMASPTMGNFSPIMSGGS 1533

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
             +PT   G++    G S  S   +P   G SP      PTSP    TSPT SP S GY  
Sbjct: 1534 DTPT---GFATEYGGGSLGS--MNPYGSGTSP-----RPTSP--FSTSPT-SPFSAGYG- 1579

Query: 1550 TSPAYSPTSPSYSPTSP--SYSPTSP-----SYSPTSPSYSPTSPSY----------SPT 1592
                      SYSPTSP   YSPTSP      Y  +SPS+SP+SPS+          +  
Sbjct: 1580 ----------SYSPTSPMAGYSPTSPMMDGGRYGASSPSFSPSSPSFQPTSPIMRHGAGD 1629

Query: 1593 SPSYSPTSPSYSPTSPA-----YSPTSPAY---SPTSPAYSPTSPSYSP---TSPSYSPT 1641
            S  YSPTSP+Y P SP      YSPTSPA    SPTSP YSP SPS+SP   TSP Y   
Sbjct: 1630 SMGYSPTSPTYQPGSPTGGDNHYSPTSPAQFGASPTSPLYSPASPSFSPGGATSPMYYVG 1689

Query: 1642 SPSY-SPTSPS--YSPTSPSYSPTSPAYSPTSPG-YSPTSPSYSPTSP----------TY 1687
            SP + SPTSP+  YSPTSPS+  +    SPTSPG YSPTSPS+SP SP          +Y
Sbjct: 1690 SPQHASPTSPNAHYSPTSPSFQRSPAQASPTSPGPYSPTSPSFSPRSPGRNNRSGGQDSY 1749

Query: 1688 SPTSPSYN 1695
            SPTSPS++
Sbjct: 1750 SPTSPSHD 1757



 Score =  114 bits (284), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 105/244 (43%), Positives = 124/244 (50%), Gaps = 63/244 (25%)

Query: 1555 SPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPAYS 1611
            SPT  ++SP  +  S +PT  +      S    +P  S TSP   PTSP S SPTSP +S
Sbjct: 1519 SPTMGNFSPIMSGGSDTPTGFATEYGGGSLGSMNPYGSGTSPR--PTSPFSTSPTSP-FS 1575

Query: 1612 PTSPAYSPTSP--AYSPTSP------------------------------------SYSP 1633
                +YSPTSP   YSPTSP                                     YSP
Sbjct: 1576 AGYGSYSPTSPMAGYSPTSPMMDGGRYGASSPSFSPSSPSFQPTSPIMRHGAGDSMGYSP 1635

Query: 1634 TSPSYSPTSPS-----YSPTSPSY---SPTSPSYSPTSPAYSP---TSPGYSPTSPSY-S 1681
            TSP+Y P SP+     YSPTSP+    SPTSP YSP SP++SP   TSP Y   SP + S
Sbjct: 1636 TSPTYQPGSPTGGDNHYSPTSPAQFGASPTSPLYSPASPSFSPGGATSPMYYVGSPQHAS 1695

Query: 1682 PTSPT--YSPTSPSYNPQSAKYSPSL--AYSPSSPRLSPASPYSPTSPNYSPTSSSYSPT 1737
            PTSP   YSPTSPS+    A+ SP+    YSP+SP  SP    SP   N S    SYSPT
Sbjct: 1696 PTSPNAHYSPTSPSFQRSPAQASPTSPGPYSPTSPSFSPR---SPGRNNRSGGQDSYSPT 1752

Query: 1738 SPSY 1741
            SPS+
Sbjct: 1753 SPSH 1756



 Score = 90.9 bits (224), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 95/238 (39%), Positives = 113/238 (47%), Gaps = 60/238 (25%)

Query: 1590 SPTSPSYSP--TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP-SYSPTSPSYS 1646
            SPT  ++SP  +  S +PT  A      +    +P  S TSP   PTSP S SPTSP +S
Sbjct: 1519 SPTMGNFSPIMSGGSDTPTGFATEYGGGSLGSMNPYGSGTSPR--PTSPFSTSPTSP-FS 1575

Query: 1647 PTSPSYSPTSP--SYSPTSPAYSPTSPGY----------------------SPTSPSYSP 1682
                SYSPTSP   YSPTSP       G                       +  S  YSP
Sbjct: 1576 AGYGSYSPTSPMAGYSPTSPMMDGGRYGASSPSFSPSSPSFQPTSPIMRHGAGDSMGYSP 1635

Query: 1683 TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSP---TSP 1739
            TSPTY P SP+             YSP+SP    ASP   TSP YSP S S+SP   TSP
Sbjct: 1636 TSPTYQPGSPTGGDNH--------YSPTSPAQFGASP---TSPLYSPASPSFSPGGATSP 1684

Query: 1740 SYSPSSPTY-SPSSPYNAGGGNPDYSPSSP--QYSPSAG-------YSPSAPGYSPSS 1787
             Y   SP + SP+SP      N  YSP+SP  Q SP+         YSP++P +SP S
Sbjct: 1685 MYYVGSPQHASPTSP------NAHYSPTSPSFQRSPAQASPTSPGPYSPTSPSFSPRS 1736



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 93/191 (48%), Gaps = 19/191 (9%)

Query: 1618 SPTSPAYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-AYSPTSPGYS 1674
            SPT   +SP  +  S +PT  +      S    +P  S TSP   PTSP + SPTSP +S
Sbjct: 1519 SPTMGNFSPIMSGGSDTPTGFATEYGGGSLGSMNPYGSGTSPR--PTSPFSTSPTSP-FS 1575

Query: 1675 PTSPSYSPTSPT--YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSS 1732
                SYSPTSP   YSPTSP  +    +Y  S      S      +  SP   + +  S 
Sbjct: 1576 AGYGSYSPTSPMAGYSPTSPMMD--GGRYGASSPSFSPSSPSFQPT--SPIMRHGAGDSM 1631

Query: 1733 SYSPTSPSYSPSSPT-----YSPSSPYNAGGG--NPDYSPSSPQYSPSAGYSPSAPGYSP 1785
             YSPTSP+Y P SPT     YSP+SP   G    +P YSP+SP +SP    SP     SP
Sbjct: 1632 GYSPTSPTYQPGSPTGGDNHYSPTSPAQFGASPTSPLYSPASPSFSPGGATSPMYYVGSP 1691

Query: 1786 SSTSQYTPQTN 1796
               S  +P  +
Sbjct: 1692 QHASPTSPNAH 1702


>gi|366998165|ref|XP_003683819.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
 gi|357522114|emb|CCE61385.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
          Length = 1719

 Score = 1583 bits (4098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 826/1576 (52%), Positives = 1082/1576 (68%), Gaps = 96/1576 (6%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
            YS A +  V+ VQFG+ SP+E+R +SV +I+  ET +  + + K GGL+DPRLG+IDR +
Sbjct: 6    YSSAPLRTVKEVQFGLFSPEEVRSISVAKIKFPETMDETQTRAKIGGLNDPRLGSIDRNL 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC   M ECPGHFGH++LAKP+FHIGF+  +  +   +C +C K+L DE++ + +Q 
Sbjct: 66   KCQTCQEGMNECPGHFGHIDLAKPVFHIGFISKIKKVCECICMHCGKLLLDENNEQMRQV 125

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            + I++ K R   I   CK KT CE     DVP +D    L  ++GGCG  QP +  +G+K
Sbjct: 126  MSIKDSKKRFNAIWTLCKTKTVCE----TDVPSEDDPTQLI-SRGGCGNAQPTIRKDGLK 180

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            ++  +K  +  ND  E  PE    ++ L  E +L + K IS  D   LG N ++ARPDWM
Sbjct: 181  LVGSWKKDKATNDGDE--PE----QRVLNTEEILNIFKHISVHDSNTLGFNEQFARPDWM 234

Query: 245  ILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            IL VLP+PPPPV          R  DDLT +LA I++ N +L   E NGAP H I E   
Sbjct: 235  ILTVLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAES 294

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFHIATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+
Sbjct: 295  LLQFHIATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS 354

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + +DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD+G 
Sbjct: 355  GDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDNGD 411

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLN
Sbjct: 412  RIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLN 471

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G 
Sbjct: 472  LSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCSVPLQIVSPQSNKPCMGIVQDTLCGI 531

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK+T RD FIE D  +N+L W  D+DG +P P I+KP PLW+GKQ+ ++ IPK I+L R 
Sbjct: 532  RKLTLRDCFIELDQLLNMLYWVPDWDGIIPTPAIIKPVPLWSGKQILSIAIPKGIHLQR- 590

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
                 D    +L+  D  + I  G+++ G + KKT+G+S G LIHV+  E GP    K  
Sbjct: 591  ----FDEGTTMLSPKDNGMLIIDGQIIFGVVDKKTVGSSNGGLIHVVTREKGPQICAKMF 646

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
            G+ Q +VN+W L N FS GIGDTIAD  TM+ I +TI+ AK  V+ + K+AQ   L  + 
Sbjct: 647  GNIQKVVNFWFLHNGFSTGIGDTIADGGTMKEITETIADAKRKVEEVTKEAQANLLTAKH 706

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G T+ ESFE+ V + LN ARD+AG  A+ +L++ NN+K MV+AGSKGSFINI+QM+ACVG
Sbjct: 707  GMTLRESFEDNVVRFLNEARDKAGRLAEVNLNDLNNVKQMVSAGSKGSFINIAQMSACVG 766

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 767  QQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLID 826

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDG+D+  IE Q++D++
Sbjct: 827  TAVKTAETGYIQRRLVKALEDIMVHYDSTTRNSLGNVIQFVYGEDGIDAGHIEKQSIDTI 886

Query: 895  KMKKSEFDKAFRFEMDEENWNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQKLEA 946
                + F+K +R ++     +PN+ L         E   D+K    L+ + D E ++L  
Sbjct: 887  GGSDAAFEKRYRIDL----MSPNHALDPSLLESGLEITGDVK----LQSILDTEYKQLVD 938

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR +    +   G+ +W LPVN++R+I NAQ+TF++D  +PSD+   EV+  V +LQE L
Sbjct: 939  DR-RFLRNVFIDGEPNWHLPVNIRRIIQNAQQTFRIDHTKPSDLTINEVIRDVARLQENL 997

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             V+ G+  +  EAQ +A   F  L+RS  A +RVL+E+RLT++AF+WV+  IES+FL+S+
Sbjct: 998  LVLRGKGKIIEEAQNDAITLFCCLVRSRLAVRRVLQEYRLTKQAFQWVLNNIESQFLRSI 1057

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
            V PGEM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPS +
Sbjct: 1058 VHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSST 1117

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            V+L P   + +E+AK ++ A+E+TTL+SVT A+E++YDPDP  T+I ED E ++ +Y + 
Sbjct: 1118 VYLDPEYATDQEKAKIIRSAIEHTTLKSVTVASEIYYDPDPTTTVIAEDEEIIQLHYSLM 1177

Query: 1187 DEDIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            D +     +  SPWLLR+EL+R  M DK L+M  V EKI + F +DL+ I+++DNADKLI
Sbjct: 1178 DSETEKNIDNQSPWLLRLELDRAAMNDKDLTMVQVGEKIKETFRNDLSVIWSEDNADKLI 1237

Query: 1245 LRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------------- 1284
            +R R++    PK    +  AE+D  LKKIE+ ML  + LR                    
Sbjct: 1238 IRCRVVR---PKSLDAETEAEEDHMLKKIENTMLESITLRGVEDIERVVMMKYDRKMPSE 1294

Query: 1285 ---------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
                           GVNL+ VM    VD  R  +N  I+I EVLGIEA R AL  E+  
Sbjct: 1295 TGEYQKVPEWVLETDGVNLMEVMTVPGVDGSRIYTNSFIDITEVLGIEAGRAALYREVYN 1354

Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
            VI+ DGSYVNYRH+A+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A  
Sbjct: 1355 VIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGA 1414

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMTPAR 1448
             AE D  RGV+EN++LGQ+APIGTG   + +++E ++K   E ++    EG E G TP  
Sbjct: 1415 SAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKVTEIEEGQEGGATPYS 1474

Query: 1449 SPVSGTPYHDGMMSPGYLFSPNLR--LSPVTDAQFSPYVG---GMAFSPTSSPGYSPSSP 1503
            S  SG    D  +    +FSP +   LS   +  F+ Y G   G A SP S+   SPSSP
Sbjct: 1475 SE-SGLINADIDIKDDLMFSPLVDSGLSDSMNGGFTAYGGADYGGATSPFSAYRESPSSP 1533

Query: 1504 GYSP-SSPGYSPTSPG 1518
            G+   SSPG+SPTSPG
Sbjct: 1534 GFGGVSSPGFSPTSPG 1549


>gi|290984021|ref|XP_002674726.1| RNA polymerase II largest subunit [Naegleria gruberi]
 gi|284088318|gb|EFC41982.1| RNA polymerase II largest subunit [Naegleria gruberi]
          Length = 1650

 Score = 1581 bits (4093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 817/1648 (49%), Positives = 1114/1648 (67%), Gaps = 123/1648 (7%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            M+  F YSP +++ +  +QFGIL+P  + +MS  +I H ET E+G PK GGL D R+GT+
Sbjct: 1    MNGAFTYSPVDLSSIDRIQFGILNPHVVEKMSACEIIHAETEEKGLPKEGGLMDLRMGTV 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            +  + C TC   ++ECPGHFGH+ +  P F+I F+KT++ I++  C +CS++L + +  +
Sbjct: 61   NSALSCMTCGCGVSECPGHFGHVNI-HPTFNILFLKTIVKILKCTCVHCSRLLFNRNTPE 119

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            FK+  +I N + R  +++   K   KC   D                  GCG  QPK++ 
Sbjct: 120  FKRIQQIANKRKRFNELM-KLKPMDKCMIDDYT----------------GCGGIQPKISK 162

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
              + +   +             P   E KQ + AE VL + KRIS +D +LLG +   + 
Sbjct: 163  NQLSITQIF-------------PNSNEIKQEIKAESVLQIFKRISTQDLELLGFDSINSN 209

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            P+WMIL  LP+PPP VRPS          DDLTH+LA II+ N  +++  ++G+P H + 
Sbjct: 210  PEWMILTCLPVPPPHVRPSVMHGLNDKAEDDLTHKLADIIKSNATIQKLSKSGSPQHYLD 269

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            +  ++LQ+H ATY +NE+ G P +T ++GR +KS+  RLK KEGR+RGNLMGKRVDFSAR
Sbjct: 270  DMIKILQYHCATYMNNEISGVPMSTTKNGRMLKSLRQRLKGKEGRVRGNLMGKRVDFSAR 329

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVITPDPTI IDQ+GVP +IA N+T PE VTP+N ER+ ELV  GP   PG   AKY++R
Sbjct: 330  TVITPDPTIEIDQVGVPRTIARNMTVPEKVTPFNFERMNELVMNGPETYPG---AKYVLR 386

Query: 411  DDGQRLDLRYLK-KSSDH-HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            DDG R+DL++L  +S+D   L+ GY +ERHL DGD VLFNRQPSLHKMS+MGHR+K+MPY
Sbjct: 387  DDGTRIDLKFLSDRSTDQVQLQYGYTIERHLQDGDVVLFNRQPSLHKMSMMGHRVKVMPY 446

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSV +PYNADFDGDEMN+H+PQS +T+ E+LELMMVPK I++PQS+RP++ +VQ
Sbjct: 447  STFRLNLSVVTPYNADFDGDEMNLHLPQSLQTKTELLELMMVPKNIITPQSHRPLIALVQ 506

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTLL   K T+RD +IEKDV MN LM+ +DF+G++P P ILKP+PLWTGKQ+F+L++P  
Sbjct: 507  DTLLAGSKCTRRDVYIEKDVMMNCLMYLQDFNGQLPVPAILKPKPLWTGKQLFSLLLP-S 565

Query: 589  INLFRTAAWHADNDKGI------LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            I+ +  ++ H D    +      L   DT + I  GELL+G L KK+LG+S GSLIH+I 
Sbjct: 566  IDYYGISSTHDDEVGDLKHLDDHLPEFDTGIIISNGELLTGILDKKSLGSSHGSLIHIIV 625

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             + G    +KFLG  Q ++NYWLLQ+ FS+GIGDTIAD +T++ I + I+ A+  VK ++
Sbjct: 626  NDKGTQEGKKFLGQCQHVLNYWLLQHGFSVGIGDTIADGETVKKIEEIINNAEREVKKIV 685

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
            KQA +  +  EPGRT+ +SFE  +N  LN AR++AG   +KSL +SN++K+MVT+GSKGS
Sbjct: 686  KQAHNGLVTAEPGRTVEQSFERSINSTLNAAREDAGMHVKKSLKDSNSIKSMVTSGSKGS 745

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
            ++NISQ+ ACVGQQNVEGKR+PFGF +RTLPHF+ DD+GPESRGFV NSYLRGLTPQEFF
Sbjct: 746  YLNISQIIACVGQQNVEGKRVPFGFKNRTLPHFSTDDHGPESRGFVANSYLRGLTPQEFF 805

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FH MGGREGLIDTAVKT+ETGYIQRRLVKAMED+ V YDGTVR++ G++IQFLYGEDGMD
Sbjct: 806  FHTMGGREGLIDTAVKTAETGYIQRRLVKAMEDVKVNYDGTVRDASGNIIQFLYGEDGMD 865

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDEENWN-PNYMLQEY-IDDLKTIKELRDVFDAE 940
             + +ESQ+ + L +    F++ +++    E+ N P   L E  +D    + +L D    E
Sbjct: 866  PIKLESQSFEMLSLSDEIFEEKYKWSTKLEDHNIPESDLNEISLDFANYLMKLND----E 921

Query: 941  VQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDP---RRPSDMHPMEVVE 997
             +KL+  R+ +  EI  S DS    PVNL RLI   Q+ +          SD++P+ V++
Sbjct: 922  YKKLQEYRHLVRDEILQSVDSKIVFPVNLSRLIKRVQREYGRKHSTFNNSSDLNPLYVIK 981

Query: 998  AVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGE 1057
             V+   E L ++ G+D LS EAQ+NA L F+I L+ + ASK V+ E  LTRE+ E+++GE
Sbjct: 982  KVNSTCEELLIIKGKDKLSEEAQRNAILLFSIFLKFSLASKVVMNELNLTRESLEYLLGE 1041

Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
            ++  FL  LV PGEM+GC+AAQSIGEPATQMTLNTFH AGVS+KNVTLGVPRL+E+++V+
Sbjct: 1042 VKYTFLNGLVQPGEMVGCIAAQSIGEPATQMTLNTFHNAGVSSKNVTLGVPRLKELLDVS 1101

Query: 1118 KKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVE 1177
            + IKTP L+++LK   ++  E AK V+  LEY+ L S+T +T++ YDPD   ++IE D  
Sbjct: 1102 RNIKTPGLTIYLKN--DNDCEIAKMVKEELEYSNLGSITRSTQIIYDPDIFNSVIESDQF 1159

Query: 1178 FVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFND 1237
            F++   E  ++ I P   SPW LR  L+REMM  + L+M+ +A  I QEF +D++C ++D
Sbjct: 1160 FIREMLE--EKTIDPNTFSPWSLRFVLDREMM-SEHLNMSQIANIIKQEFQNDISCFYSD 1216

Query: 1238 DNADKLILRIRIMNDEAPKGELNDESAEDDV---FLKKIESNMLTEMALRGVN------- 1287
            DN+++LIL IRI N E  K E  D+  +  +   FLK++ESNML++++L+G N       
Sbjct: 1217 DNSEELILIIRIRNSEKSKSETEDDEEDSSMIVEFLKRLESNMLSQLSLKGHNNLKKVFY 1276

Query: 1288 ----------------------------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                        LL+VM H  VD R T SN +IE+ +VLGIEA 
Sbjct: 1277 RKDENIKFFSNKGVEKKTRWSLETEGCDLLSVMSHPQVDFRNTLSNDVIEVEKVLGIEAC 1336

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R  L+ ELR VI FDGSYVNYRHLAILCD MT  G + A+TRHG+ R+D GP+MRCSFE+
Sbjct: 1337 RNLLMKELRKVIEFDGSYVNYRHLAILCDVMTQGGVITAVTRHGLARSDNGPLMRCSFEQ 1396

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEG 1439
            TV++L++AA F++ D L+GV+ N+M+G+LAPIGTG   L L++++LK  I+   P++M+ 
Sbjct: 1397 TVEVLVEAAQFSDVDTLKGVSANVMVGKLAPIGTGTFDLVLDEQLLKETIQ---PTFMKA 1453

Query: 1440 LEFGMTPARSP-VSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGY 1498
                     SP    TPYH    +P      +   S     Q+SPY    AFSP +S   
Sbjct: 1454 SHLTNISISSPHAVMTPYHSTFSTPSCSTPFSSSPSSPWTPQYSPYTS--AFSPITSIAS 1511

Query: 1499 SPSS--PGYSPSS-PGYSPTSPG-YSPTSP--GYSPTSPG---YSPTSPTYS-PSSPGYS 1548
            SP+S    YSPS+   YSP+SP  YSP+SP   YSP+SP    YSPTSP  + P SP YS
Sbjct: 1512 SPTSHNASYSPSANHNYSPSSPANYSPSSPLGSYSPSSPNYRDYSPTSPLINGPMSPIYS 1571

Query: 1549 PTSPAYSP-TSPS-YSPTSPSYSPTSPS 1574
            P+SPAY+P  SP  YSP+SP++SP SP+
Sbjct: 1572 PSSPAYTPMNSPGRYSPSSPAFSPLSPN 1599



 Score = 88.2 bits (217), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/107 (57%), Positives = 78/107 (72%), Gaps = 14/107 (13%)

Query: 1589 YSPTSPSYSP-TSPSYSPTS--PAYSPTSPA-YSPTSPA-YSPTSP--SYSPTSPSYSPT 1641
            YSP + ++SP TS + SPTS   +YSP++   YSP+SPA YSP+SP  SYSP+SP+Y   
Sbjct: 1496 YSPYTSAFSPITSIASSPTSHNASYSPSANHNYSPSSPANYSPSSPLGSYSPSSPNYR-- 1553

Query: 1642 SPSYSPTSPSYS-PTSPSYSPTSPAYSP-TSPG-YSPTSPSYSPTSP 1685
               YSPTSP  + P SP YSP+SPAY+P  SPG YSP+SP++SP SP
Sbjct: 1554 --DYSPTSPLINGPMSPIYSPSSPAYTPMNSPGRYSPSSPAFSPLSP 1598



 Score = 84.7 bits (208), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/104 (56%), Positives = 76/104 (73%), Gaps = 13/104 (12%)

Query: 1603 YSPTSPAYSP-TSPAYSPTS--PAYSPTS-PSYSPTSPS-YSPTSP--SYSPTSPS---Y 1652
            YSP + A+SP TS A SPTS   +YSP++  +YSP+SP+ YSP+SP  SYSP+SP+   Y
Sbjct: 1496 YSPYTSAFSPITSIASSPTSHNASYSPSANHNYSPSSPANYSPSSPLGSYSPSSPNYRDY 1555

Query: 1653 SPTSPSYS-PTSPAYSPTSPGYSP-TSPS-YSPTSPTYSPTSPS 1693
            SPTSP  + P SP YSP+SP Y+P  SP  YSP+SP +SP SP+
Sbjct: 1556 SPTSPLINGPMSPIYSPSSPAYTPMNSPGRYSPSSPAFSPLSPN 1599



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/117 (52%), Positives = 76/117 (64%), Gaps = 21/117 (17%)

Query: 1610 YSPTSPAYSP-TSPAYSPTS--PSYSPTS-PSYSPTSPS-YSPTSP--SYSPTSPSYSPT 1662
            YSP + A+SP TS A SPTS   SYSP++  +YSP+SP+ YSP+SP  SYSP+SP+Y   
Sbjct: 1496 YSPYTSAFSPITSIASSPTSHNASYSPSANHNYSPSSPANYSPSSPLGSYSPSSPNYRD- 1554

Query: 1663 SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
               YSPTSP  +       P SP YSP+SP+Y P +   SP   YSPSSP  SP SP
Sbjct: 1555 ---YSPTSPLIN------GPMSPIYSPSSPAYTPMN---SPG-RYSPSSPAFSPLSP 1598



 Score = 77.8 bits (190), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/138 (49%), Positives = 86/138 (62%), Gaps = 16/138 (11%)

Query: 1617 YSPTSPAYSP-TSPSYSPTS--PSYSPTS-PSYSPTSPS-YSPTSP--SYSPTSPAYSPT 1669
            YSP + A+SP TS + SPTS   SYSP++  +YSP+SP+ YSP+SP  SYSP+SP Y   
Sbjct: 1496 YSPYTSAFSPITSIASSPTSHNASYSPSANHNYSPSSPANYSPSSPLGSYSPSSPNYR-- 1553

Query: 1670 SPGYSPTSPSYS-PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYS 1728
               YSPTSP  + P SP YSP+SP+Y P +   SP   YSPSSP  SP SP   +  +  
Sbjct: 1554 --DYSPTSPLINGPMSPIYSPSSPAYTPMN---SPG-RYSPSSPAFSPLSPNVYSPSSPG 1607

Query: 1729 PTSSSYSPTSPSYSPSSP 1746
              S S   +   YSP+SP
Sbjct: 1608 RYSPSSPSSPNIYSPTSP 1625



 Score = 74.7 bits (182), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/110 (49%), Positives = 72/110 (65%), Gaps = 16/110 (14%)

Query: 1694 YNPQSAKYSP--SLAYSPSSPRLSPASPYSPTS-PNYSPTS-SSYSPTSP--SYSPSSPT 1747
            Y+P ++ +SP  S+A SP+S   S    YSP++  NYSP+S ++YSP+SP  SYSPSSP 
Sbjct: 1496 YSPYTSAFSPITSIASSPTSHNAS----YSPSANHNYSPSSPANYSPSSPLGSYSPSSPN 1551

Query: 1748 ---YSPSSPYNAGGGNPDYSPSSPQYSPS---AGYSPSAPGYSPSSTSQY 1791
               YSP+SP   G  +P YSPSSP Y+P      YSPS+P +SP S + Y
Sbjct: 1552 YRDYSPTSPLINGPMSPIYSPSSPAYTPMNSPGRYSPSSPAFSPLSPNVY 1601



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 68/120 (56%), Gaps = 26/120 (21%)

Query: 1659 YSPTSPAYSP-TSPGYSPTS--PSYSPTS-PTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
            YSP + A+SP TS   SPTS   SYSP++   YSP+SP      A YSPS          
Sbjct: 1496 YSPYTSAFSPITSIASSPTSHNASYSPSANHNYSPSSP------ANYSPS---------- 1539

Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYS-PSSPTYSPSSPYNAGGGNPD-YSPSSPQYSP 1772
            SP   YSP+SPNY      YSPTSP  + P SP YSPSSP      +P  YSPSSP +SP
Sbjct: 1540 SPLGSYSPSSPNYR----DYSPTSPLINGPMSPIYSPSSPAYTPMNSPGRYSPSSPAFSP 1595



 Score = 66.6 bits (161), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 85/140 (60%), Gaps = 26/140 (18%)

Query: 1645 YSPTSPSYSP-TSPSYSPTS--PAYSPTS-PGYSPTSPS-YSPTSP--TYSPTSPSYNPQ 1697
            YSP + ++SP TS + SPTS   +YSP++   YSP+SP+ YSP+SP  +YSP+SP+Y   
Sbjct: 1496 YSPYTSAFSPITSIASSPTSHNASYSPSANHNYSPSSPANYSPSSPLGSYSPSSPNYRD- 1554

Query: 1698 SAKYSPSLAYSPSSPRLS-PASP-YSPTSPNYSPTSS--SYSPTSPSYSPSSPTY----- 1748
                     YSP+SP ++ P SP YSP+SP Y+P +S   YSP+SP++SP SP       
Sbjct: 1555 ---------YSPTSPLINGPMSPIYSPSSPAYTPMNSPGRYSPSSPAFSPLSPNVYSPSS 1605

Query: 1749 SPSSPYNAGGGNPDYSPSSP 1768
                  ++      YSP+SP
Sbjct: 1606 PGRYSPSSPSSPNIYSPTSP 1625


>gi|50289967|ref|XP_447415.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526725|emb|CAG60352.1| unnamed protein product [Candida glabrata]
          Length = 1715

 Score = 1580 bits (4091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 821/1579 (51%), Positives = 1093/1579 (69%), Gaps = 102/1579 (6%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
            YS A +  V+ VQFG+ SP+EIR +SV +I   ET +  + + K GGL+DPRLG+IDR +
Sbjct: 6    YSSAPLRTVKEVQFGLFSPEEIRAISVAKIRLPETMDETQTRAKIGGLNDPRLGSIDRNL 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC   M ECPGHFGH++LAKP+FHIGF+  +  +  S+C +C K+L DE + + +QA
Sbjct: 66   KCQTCQEGMNECPGHFGHIDLAKPVFHIGFITKIKKVCESLCMHCGKLLLDEHNEQMRQA 125

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK-NKGGCGAQQPKLTIEGM 183
            ++I++PK R   +   CK K  CE     DVP +D  +P K  ++GGCG  QP +  +G+
Sbjct: 126  IQIKDPKKRFNAVWSLCKTKMVCE----TDVPSED--DPTKLISRGGCGNTQPTIRKDGL 179

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
            K++  +K  +   D  E  PE    ++ L+ E +L + K IS ED   LG N ++ARP+W
Sbjct: 180  KLVGSWKKDKSTGDADE--PE----QRVLSTEEILNIFKHISPEDSYRLGFNEEFARPEW 233

Query: 244  MILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            MIL VLP+PPPPV          R  DDLT +LA I++ N +L   E NGAP H + E  
Sbjct: 234  MILTVLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAVEEAE 293

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
             LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI
Sbjct: 294  SLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVI 353

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            + DP + +DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD+G
Sbjct: 354  SGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLSQLVRNGPNEHPG---AKYVIRDNG 410

Query: 414  QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
             R+DLRY K+S D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRL
Sbjct: 411  DRIDLRYSKRSGDVQLQYGWKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVVPYSTFRL 470

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G
Sbjct: 471  NLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCG 530

Query: 534  CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
             RK+T RDTF+E D  +N+L W  D+DG +P P I+KP+PLW+GKQ+ ++ IPK I+L R
Sbjct: 531  IRKLTLRDTFLEFDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPKGIHLQR 590

Query: 594  TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
                  D    +L+  D  + +  GE++ G + KKT+G+S+G LIHV+  E GP    + 
Sbjct: 591  -----FDEGTTLLSPKDNGMLVIDGEIIFGVVDKKTVGSSSGGLIHVVTREKGPTICARL 645

Query: 654  LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
             G+ Q +VN+WLL N FS GIGDT+AD +TM  I++TI++AK  V+ + K+AQ   L  +
Sbjct: 646  FGNIQKVVNFWLLHNGFSTGIGDTVADGQTMREISETIAEAKQKVEAVTKEAQANLLTAK 705

Query: 714  PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
             G T+ ESFE+ V + LN ARD AG  A+ +L + NN+K MV+AGSKGSFINI+QM+ACV
Sbjct: 706  HGMTLRESFEDNVVRFLNEARDRAGRLAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACV 765

Query: 774  GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
            GQQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLI
Sbjct: 766  GQQSVEGKRIGFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLI 825

Query: 834  DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDS 893
            DTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLG+VIQF+YGEDGMD+  IE Q+LD+
Sbjct: 826  DTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAGHIEKQSLDT 885

Query: 894  LKMKKSEFDKAFRFEM--DEENWNPNYML--QEYIDDLKTIKELRDVFDAEVQKLEADRY 949
            +      F++ +R ++     +  P+ +    E I DLK    ++   D E ++L  DR 
Sbjct: 886  MGGSDQAFERRYRIDLLNTSNSLEPSLLESGSEIIGDLK----VQMALDEEYKQLVKDRR 941

Query: 950  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1009
             L T I + G+SSWPLPVN++R+I NAQ+TF++D  +PSD+   E++ +V  LQ+RL V+
Sbjct: 942  FLRT-IFSDGESSWPLPVNIRRIIQNAQQTFRIDHTKPSDLTIPEIINSVRDLQDRLLVL 1000

Query: 1010 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1069
              +  +  +AQ +A   F  LLRS  A++RVL+E+RLT+EAFEWV+  +E++FL+S+V P
Sbjct: 1001 RSKSEIIKKAQDDAVTLFCCLLRSRLATRRVLQEYRLTKEAFEWVLNNVEAQFLRSIVHP 1060

Query: 1070 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1129
            GEM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L
Sbjct: 1061 GEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYL 1120

Query: 1130 KPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDED 1189
            +P  ++ +E+AK V+ A+E+TTL+SVT A+E++YDPDP  T+I ED E ++ ++ + D++
Sbjct: 1121 EPEYSADQEKAKLVRSAIEHTTLKSVTVASEIYYDPDPRSTVIPEDDEIIQLHFSLLDDE 1180

Query: 1190 IAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1247
                 ++ SPWLLR+EL+R  M DK L+M  V E+I   F +DL  I+++DNA+KLI+R 
Sbjct: 1181 TEKLLDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKDTFKNDLFVIWSEDNAEKLIIRC 1240

Query: 1248 RIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR----------------------- 1284
            R++    PK    +  AE+D  LKKIE+ ML  + LR                       
Sbjct: 1241 RVVR---PKALDAETEAEEDHMLKKIENTMLENITLRGIEGIERVVMMKYDRKVPNETGE 1297

Query: 1285 ------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
                        GVNL  VM    VD  R  +N  I+I+EVLGIEA R AL  E+  VI+
Sbjct: 1298 YQKVPEWVLETDGVNLSEVMTVPGVDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIA 1357

Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
             DGSYVNYRH+A+L D MT +G L ++TRHG NR+ TG +MRCSFEETV+IL +A   AE
Sbjct: 1358 SDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSSTGALMRCSFEETVEILFEAGASAE 1417

Query: 1393 SDYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMTPARSPV 1451
             D  RGV+EN++LGQ+APIGTG   + +++E ++K   E ++    +G + G TP  +  
Sbjct: 1418 LDDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITELEDGQDGGATPYSNEA 1477

Query: 1452 SGTPYHDGMMSPGYLFSPNLRLSPVTDA--------QFSPYVG---GMAFSPTSSPGYSP 1500
                   G+++        L  SP+ DA         F+ Y G   G A SP  + G +P
Sbjct: 1478 -------GLVNTDIDVKDELMFSPLVDAGSSDAMSGGFTAYGGAEYGGATSPFGAYGDAP 1530

Query: 1501 SSPGYSP-SSPGYSPTSPG 1518
            +SPG+   SSPG+SPTSP 
Sbjct: 1531 ASPGFGGVSSPGFSPTSPA 1549


>gi|452983085|gb|EME82843.1| hypothetical protein MYCFIDRAFT_58269 [Pseudocercospora fijiensis
            CIRAD86]
          Length = 1753

 Score = 1580 bits (4090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 820/1672 (49%), Positives = 1103/1672 (65%), Gaps = 121/1672 (7%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDR 62
            FP+S A +  V+ +QFG+ SPDEI+ MSV  IE+ ET   +R +P+  GL+DP+LGTIDR
Sbjct: 4    FPHSSAPLKTVQEIQFGLFSPDEIKSMSVCHIEYAETMDEQRHRPREKGLNDPKLGTIDR 63

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
               C TC  +  ECPGHFGH+ELA P+FH+GF+  +  I+ SVC NC K+L DE +  FK
Sbjct: 64   SQMCATCGESQQECPGHFGHIELAVPVFHVGFITKIKKILESVCHNCGKLLEDESNPLFK 123

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD-GEEPLKKNK---GGCGAQQPKL 178
            +A+ +R+PK R + +   CK K  C+   + D   +D G  P K+ +   GGCG  QP +
Sbjct: 124  RAVGLRDPKRRFEAVTRLCKPKMTCDLDAKNDDEQEDFGSNPKKEKRPGHGGCGNIQPTI 183

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              E +K+   +K    KN+D E     VE+K  +T + VL V   IS++D   LGLN  Y
Sbjct: 184  RKEQLKLNGTWKL--GKNEDGED--NGVEKK-IITPQEVLRVFGLISEDDLLRLGLNVDY 238

Query: 239  ARPDWMILQVLPIPPPPVRPS-------------DDLTHQLAMIIRHNENLRRQERNGAP 285
            ARP+WM+L VLP+PPP VRPS             DDLT++L+ IIR N N+RR E+ G+P
Sbjct: 239  ARPEWMVLTVLPVPPPAVRPSISVDGTSQGMRSEDDLTYKLSDIIRANSNVRRAEQEGSP 298

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             HI  EF  LLQ+H+ATY DN++ G P++ Q+SGRP+K+I +RLK+KEGR+RGNLMGKRV
Sbjct: 299  QHITDEFTSLLQYHVATYMDNDIAGMPKSIQKSGRPLKAIRARLKSKEGRLRGNLMGKRV 358

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT DP +++DQ+G P S A  LT+PE VT YNI +L+ELV  GP+  PG   A
Sbjct: 359  DFSARTVITGDPNLDLDQVGCPRSTARILTFPERVTLYNIHKLQELVRNGPNEHPG---A 415

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            K+IIR+DG R+DLRY K++ +  L+LG+ VERH+ DGD+++FNRQPSLHK S+MGHR+K+
Sbjct: 416  KHIIREDGSRIDLRYHKRAGEIQLQLGWIVERHIVDGDYIIFNRQPSLHKESMMGHRVKV 475

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ  ETRAEV  L  VP  IVSPQ N P+MG
Sbjct: 476  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQGHETRAEVANLCAVPHNIVSPQKNGPLMG 535

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDT+ G   +T+RDT ++ +  MNILMW   +DG +P P ILKP P WTGKQ+ +L +
Sbjct: 536  IVQDTMAGIWMMTRRDTMMDYEQVMNILMWVPGWDGVIPTPAILKPSPRWTGKQIISLGL 595

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            P  +N+FR +    + D  +L   + ++ I+ GEL+ G   KK +G S G ++H I+ + 
Sbjct: 596  PLGLNIFRKSE---EGDIPLLEKEEPVL-IQNGELVWGRFTKKLVGASGGGVVHYIFNDK 651

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GPDA  +F    Q +  YWLL + FS+GIGDT+ DA  +  I + + K K  V+  + + 
Sbjct: 652  GPDATVEFFNAAQRICCYWLLHHGFSVGIGDTVPDADLVAKIEEQVVKYKTQVEEYMSEV 711

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
            Q  ++E  PG T+ E+FENK    L+ AR+ AG  A K ++  NN+  MV +GSKGS  N
Sbjct: 712  QIDNMEASPGMTVRETFENKTKTALDNARNGAGDVAYKGMNACNNVGTMVKSGSKGSTTN 771

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            +SQMTA VGQQ++EGKR+PFGF DR LPHF KDDY P SRGFVENSYLRGLTPQEFFFHA
Sbjct: 772  VSQMTAAVGQQSLEGKRLPFGFKDRVLPHFPKDDYSPASRGFVENSYLRGLTPQEFFFHA 831

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRLVKA+E+IM+KYDGTVRNSLGD++QF YGEDG+D+ +
Sbjct: 832  MGGREGLIDTAVKTAETGYIQRRLVKALEEIMIKYDGTVRNSLGDILQFTYGEDGLDATY 891

Query: 886  IESQTLDSLKMKKSEFDKAFRFEM-----DEENWNPNYMLQEYIDDLKTIKELRDVFDAE 940
            IE+Q L+ +      F+K ++ ++      ++    NY+  E  ++L    E++ +FD E
Sbjct: 892  IEAQNLEIITSSNEAFEKKYKIDVISPSSKDQTLTSNYL--EVANELSGDVEVQQLFDEE 949

Query: 941  VQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
             + ++ DR ++   +  + D  + LP+N+ R+I NA+  FK++    SD+ P EV+  V 
Sbjct: 950  FEAIKHDRAKIRQNLDDADDRRF-LPLNVGRMIANARNKFKINDNSKSDLDPREVIPKVR 1008

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L +RLK++ G+D LS EA  NATL    L RS  A KR++KE +L++ A + ++G+IE+
Sbjct: 1009 SLLDRLKIIRGDDELSKEADLNATLLCKALFRSRLAFKRLVKEDKLSKLALDNILGDIEN 1068

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            RFL++LV+PGEM+G +AAQSIGEPATQMTLNTFH AGV+AK  T GVPRL+EI+NVA  I
Sbjct: 1069 RFLRALVSPGEMVGVLAAQSIGEPATQMTLNTFHLAGVTAKTTTKGVPRLKEILNVADNI 1128

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            KTP++ V+  P   + ++ AK ++  +E+T+LR VT+A E++YDPD   T+I+ED + V+
Sbjct: 1129 KTPNMKVYQLPEARAAQDSAKLLRSKVEFTSLRGVTDAAEIYYDPDIESTVIDEDRDMVE 1188

Query: 1181 SYYEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
            SY+ +P+E   +P+  S WLLR  L R  ++DK L++  VA+KI + +  D+  IF+DDN
Sbjct: 1189 SYFIIPEEGADSPDAQSRWLLRFVLGRRQLLDKGLTVTQVAQKIKEVYTSDIAVIFSDDN 1248

Query: 1240 ADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVN------------ 1287
            A++ ++R+R++N    K E  DES+EDD  LK++  +ML  + LRGVN            
Sbjct: 1249 AEQTVVRVRMLN-RGDKDEEGDESSEDDT-LKQLAEHMLDNVILRGVNGVRRVFVSKANQ 1306

Query: 1288 ---------------------------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                                       L  V+  + VD+ RTT NH    ++V GIEAVR
Sbjct: 1307 IIEKPNGAMTQGGEESVEWYLDTDGVNLQKVLAVDGVDSARTTCNHFQSTMKVFGIEAVR 1366

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             +L+ E++ V++ DGSYVN+RH+AILCD M  RG LMA+TRHGINR+DTG +MRCSFEET
Sbjct: 1367 ASLMAEMKDVLTNDGSYVNHRHMAILCDVMCARGELMAVTRHGINRSDTGALMRCSFEET 1426

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            V+IL DAA   E D  RGV+ENI+LGQLAP GTG+  + L+  ML      Q P  +   
Sbjct: 1427 VEILFDAASSGELDDCRGVSENIILGQLAPSGTGEFDMLLDSNMLSTVTATQRPMQVGAA 1486

Query: 1441 EFGMTPARSPVSGTPYHDG--MMSPGYLFSPNL--RLSPVT-----------------DA 1479
               M+P  S  S TPY  G  M   G +  P+     SP+                  D 
Sbjct: 1487 GGAMSPM-SDGSMTPYDMGSPMSESGGIAGPDYGASFSPIINPGQDEGGGLTAYGGGYDG 1545

Query: 1480 QFSPYVGGMAFSPTSSPGYSPSSP---GYSPSSPGYSPTSPGYSPTSP-GYSPTSPGYSP 1535
              SPY GG+      SPGY+P SP   G+SPSSPGY   + GYSPTSP GYSPTSPG + 
Sbjct: 1546 GVSPYRGGI------SPGYAPQSPFSGGFSPSSPGY---AGGYSPTSPGGYSPTSPGGAL 1596

Query: 1536 TSPTYSPSSPGYSPTSPAYSPT-----SPSYSPTSPSYSPTSPSYSPTSPSY 1582
            TSP Y+ +SP YSP SPAY PT       + +P S    P  P +    P +
Sbjct: 1597 TSPAYAMTSPAYSPQSPAYQPTSRRRSRRALAPRSHPQVPHIPQHRRVIPQH 1648



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 71/145 (48%), Gaps = 15/145 (10%)

Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPT-SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
            SP S S     P Y     S+SP  +P         +         SP     SP Y+P 
Sbjct: 1505 SPMSESGGIAGPDYGA---SFSPIINPGQDEGGGLTAYGGGYDGGVSPYRGGISPGYAPQ 1561

Query: 1642 SP---SYSPTSPSYSPTSPSYSPTSPA-YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
            SP    +SP+SP Y+     YSPTSP  YSPTSPG + TSP+Y+ TSP YSP SP+Y P 
Sbjct: 1562 SPFSGGFSPSSPGYAG---GYSPTSPGGYSPTSPGGALTSPAYAMTSPAYSPQSPAYQPT 1618

Query: 1698 SAKYSPSLAYSPSSPRLSPASPYSP 1722
            S + S        +PR  P  P+ P
Sbjct: 1619 SRRRSRRAL----APRSHPQVPHIP 1639



 Score = 64.7 bits (156), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 62/144 (43%), Gaps = 15/144 (10%)

Query: 1609 AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPAYS 1667
            A SP S          SP S S     P Y  + SP  +P        +          S
Sbjct: 1489 AMSPMSDGSMTPYDMGSPMSESGGIAGPDYGASFSPIINPGQDEGGGLTAYGGGYDGGVS 1548

Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY 1727
            P   G SP     SP S  +SP+SP Y         +  YSP+SP       YSPTSP  
Sbjct: 1549 PYRGGISPGYAPQSPFSGGFSPSSPGY---------AGGYSPTSP-----GGYSPTSPGG 1594

Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPS 1751
            + TS +Y+ TSP+YSP SP Y P+
Sbjct: 1595 ALTSPAYAMTSPAYSPQSPAYQPT 1618



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 59/136 (43%), Gaps = 20/136 (14%)

Query: 1665 AYSPTSPGY-------SPTSPSYSPTSPTYSPT-SPSYNPQSAKYSPSLAYSPSSPRLSP 1716
            A SP S G        SP S S     P Y  + SP  NP   +     AY         
Sbjct: 1489 AMSPMSDGSMTPYDMGSPMSESGGIAGPDYGASFSPIINPGQDEGGGLTAYGGGYD--GG 1546

Query: 1717 ASPY-SPTSPNYSPTSSSYSPTSPSYSPSSP----TYSPSSPYNAGGGNPDYSPSSPQYS 1771
             SPY    SP Y+P S    P S  +SPSSP     YSP+SP      +P  + +SP Y+
Sbjct: 1547 VSPYRGGISPGYAPQS----PFSGGFSPSSPGYAGGYSPTSPGGYSPTSPGGALTSPAYA 1602

Query: 1772 -PSAGYSPSAPGYSPS 1786
              S  YSP +P Y P+
Sbjct: 1603 MTSPAYSPQSPAYQPT 1618


>gi|346971808|gb|EGY15260.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium dahliae
            VdLs.17]
          Length = 1755

 Score = 1578 bits (4087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 849/1776 (47%), Positives = 1137/1776 (64%), Gaps = 194/1776 (10%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            F +S A V  +  +QFG++SP++I+ MSV  + + ET +  R KP+  GL+DP LG+IDR
Sbjct: 6    FTHSSAPVKTIEEIQFGLMSPEQIKTMSVCHVIYPETMDETRTKPRDSGLNDPLLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TCT  M ECPGHFGH+ELAK ++H GF+K V  I+  VC  C K+L D +D +F+
Sbjct: 66   QFKCKTCTQAMGECPGHFGHIELAKGVYHPGFIKKVKKILEIVCLECYKVLGDRNDPEFE 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK----GGCGAQQPKL 178
            QA+  R+PK R  ++   CK K +CE   + +  G D    L++       GCG  +  +
Sbjct: 126  QAVNTRDPKQRFHRVWLHCKKKKRCENELKEEKDGPDSFPELRRQNQVPHDGCGNVKHDI 185

Query: 179  TIEGMKMIAEYKAQRKKN-DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
              + +++I +  +  +    D +++P        +TA+R  G+L+RISD+D + +GLN  
Sbjct: 186  RAKALQLIEKVTSTTEDGVKDVKEVP--------ITADRAHGILRRISDDDLRDMGLNLD 237

Query: 238  YARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGA 284
            YARP+WMI+ V             +      +R  DDLT++L  IIR N N+R+  R  +
Sbjct: 238  YARPEWMIITVLPVPPPPVRPSISMDGTGQGMRNEDDLTYKLGDIIRANGNVRQAIREAS 297

Query: 285  PAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKR 344
            PAHI  +F QLLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKR
Sbjct: 298  PAHIARDFEQLLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKR 357

Query: 345  VDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTG 404
            VDFSARTVIT D  +++D++GVP SIA  LTYPETVTPYNI +L ELV+ GP+  PG   
Sbjct: 358  VDFSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNIGKLHELVQNGPNEHPG--- 414

Query: 405  AKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIK 464
            AKY+IR DG R+DLR+ +++    LE G+KVERHL  GD+++FNRQPSLHK S+MGHR++
Sbjct: 415  AKYVIRTDGTRIDLRHHRRAGQISLEYGWKVERHLMTGDYIIFNRQPSLHKESMMGHRVR 474

Query: 465  IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 524
            +MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ EL MVP  IVSPQ N P+M
Sbjct: 475  VMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEIKELCMVPINIVSPQRNGPLM 534

Query: 525  GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLI 584
            GIVQDTL G  K+ +RD F+ K+  MNI++W  ++DG +P P IL+P P WTGKQ+ ++ 
Sbjct: 535  GIVQDTLAGAYKLCRRDVFLTKEEVMNIMLWVPNWDGIIPVPAILRPSPRWTGKQIMSMA 594

Query: 585  IPKQINLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            IP+ ++L        DN   D+G+L        I+ G+L+ G L KK +G ++G ++H++
Sbjct: 595  IPEIVSLNSLPDTKEDNSVKDEGLL--------IQSGQLMYGLLTKKVIGAASGGIVHIV 646

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E GP+AA KFL   Q  VNYWLL N FSIGIGDTI D  T+E +   I + K+ V  L
Sbjct: 647  YNEHGPEAAMKFLNGVQQTVNYWLLHNGFSIGIGDTIPDTLTIEKVQGHIDEQKDEVARL 706

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
             KQA +  LEP PG  + E+FE+KV++ LNTARD+AG++ QKSL + NN   M  +GSKG
Sbjct: 707  TKQATNNELEPSPGMNIRETFESKVSRALNTARDKAGTTTQKSLKDLNNAVTMALSGSKG 766

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EF
Sbjct: 767  SSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEF 826

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  KYDGTVRNSLGD+IQFLYGEDG+
Sbjct: 827  FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVSAKYDGTVRNSLGDIIQFLYGEDGL 886

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
            D+++IE Q +D L M   +FD  ++ ++ + N        EY +++      + + D E 
Sbjct: 887  DAIYIEKQRMDFLNMSNKKFDDRYKLDVMDANKPEELDWLEYGNEIAGDPASQQLLDEEY 946

Query: 942  QKLEADRYQLATEI--ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
            + L  DR ++  EI      D S  LP+N+ R++  A+K F V   + SD+ P +V+ AV
Sbjct: 947  EALAEDR-RVVREINFRRKDDESMQLPLNIVRIMETAKKLFNVQDFQRSDLTPQDVIPAV 1005

Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
              + +R+ VV G+D LS EA  NAT+ F   +RS  A KRV    RL + AF  V+GE+E
Sbjct: 1006 ASMLDRMTVVRGQDGLSKEADYNATILFKAHMRSRLAFKRVACLQRLNKLAFNHVLGELE 1065

Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
             R+ ++ ++PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+A+ 
Sbjct: 1066 GRWAKASISPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAQN 1125

Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
            IKTPS+ V+L  G N+T+E AK ++  +E+TTLRSVT  TE++YDPD   T+I  D + V
Sbjct: 1126 IKTPSMVVYLSEG-NATQEAAKALRSTVEHTTLRSVTAMTEIYYDPDLENTVIPSDTDMV 1184

Query: 1180 KSYYEMPDEDIAPEKI-SPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDD 1238
            +SY+ +PD+      + + WLLRI L+R+ M+DK+L++  VA +I  ++ +D   +F+D+
Sbjct: 1185 ESYWAIPDDSHESANLQNRWLLRITLDRQKMLDKELTVEDVASRIKADYPNDCNLVFSDN 1244

Query: 1239 NADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------------ 1286
            NAD+ ++RIR +  +  KG  ++   EDDV LK+ E+++L  + LRGV            
Sbjct: 1245 NADEQVIRIRTIKPD--KGGDDESKVEDDVMLKQFETHLLDTLTLRGVLGIERAFLNKET 1302

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                         +L +V+  E VDA RT +NHL +I EV GIE
Sbjct: 1303 KLIETDDGALLAAKADDRCQEWYLDTSGTSLSSVLMVEGVDATRTYTNHLWQINEVFGIE 1362

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            A R AL+ EL  V++FDGSYVN+RHLA+L D MTYRG + A+TRHGINR DTG +MRCSF
Sbjct: 1363 AARGALVRELTQVLAFDGSYVNHRHLALLVDVMTYRGGISAVTRHGINRADTGALMRCSF 1422

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI----ELQL 1433
            EETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG   + L+ +ML+  I     + L
Sbjct: 1423 EETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFEVLLDPKMLETVISDNSRMGL 1482

Query: 1434 PSYM--EGLEFGMTPARSPV-SGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
               M  +G E G   A +P  +G+P   G +S G   S     SP+  A      G    
Sbjct: 1483 VPGMPVKGGEMG--GAATPYDTGSPLDSGYLSLGSPSSNEGNFSPIVGAGSDDNTGFGTE 1540

Query: 1491 SPTSSPGYSPSSPGYSPSSPGY--SPTSP--------GYSPTSP--GYSPTSP------- 1531
               +  G+  +SPG + ++  +  SPTSP        GYSPTSP  GYSPTSP       
Sbjct: 1541 YGGTYGGFGGASPGRAGATSPFTTSPTSPFSSFAGAGGYSPTSPGGGYSPTSPLMDGGAR 1600

Query: 1532 -------------------GYSPTSPTYSPSSPGYSPTSPAYSPTSPS----YSPTSP-- 1566
                                + PTSP    +SP YSPTSP+YSPTSP+    YSPTSP  
Sbjct: 1601 YATSPQFSPSSPSFSPTSPVHRPTSP----ASPNYSPTSPSYSPTSPTSPRHYSPTSPAQ 1656

Query: 1567 -----------------------------------------------SYSPTSPSYSPTS 1579
                                                           SYSPTSPS+   +
Sbjct: 1657 FNSPTSPSYSPASPSYSPTSPNLHGAGPTSPSYSPASPSWSPTSPEHSYSPTSPSFQRPA 1716

Query: 1580 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
               SPTSP+YSPTSPS+SP +P  S +   YSP SP
Sbjct: 1717 MQQSPTSPNYSPTSPSFSPRTPGPSGSGNQYSPNSP 1752



 Score = 86.7 bits (213), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 110/284 (38%), Positives = 132/284 (46%), Gaps = 56/284 (19%)

Query: 1518 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGY-SPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1576
            G  P  P       G +    T SP   GY S  SP  S    ++SP   + S  +  + 
Sbjct: 1481 GLVPGMPVKGGEMGGAATPYDTGSPLDSGYLSLGSP--SSNEGNFSPIVGAGSDDNTGFG 1538

Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPAYS-PTSPAYSPTSPA--YSPTSPSYS 1632
                         SP       TSP + SPTSP  S   +  YSPTSP   YSPTSP   
Sbjct: 1539 TEYGGTYGGFGGASPGRAG--ATSPFTTSPTSPFSSFAGAGGYSPTSPGGGYSPTSPLMD 1596

Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT----YS 1688
                +   TSP +SP+SPS+SPTSP + PTSPA    SP YSPTSPSYSPTSPT    YS
Sbjct: 1597 --GGARYATSPQFSPSSPSFSPTSPVHRPTSPA----SPNYSPTSPSYSPTSPTSPRHYS 1650

Query: 1689 PTSPS-YNPQSAKYSPSL-----------------------------------AYSPSSP 1712
            PTSP+ +N  ++                                         +YSP+SP
Sbjct: 1651 PTSPAQFNSPTSPSYSPASPSYSPTSPNLHGAGPTSPSYSPASPSWSPTSPEHSYSPTSP 1710

Query: 1713 RLS-PASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYN 1755
                PA   SPTSPNYSPTS S+SP +P  S S   YSP+SP N
Sbjct: 1711 SFQRPAMQQSPTSPNYSPTSPSFSPRTPGPSGSGNQYSPNSPTN 1754



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/203 (38%), Positives = 100/203 (49%), Gaps = 64/203 (31%)

Query: 1655 TSP-SYSPTSPAYS-PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSP 1712
            TSP + SPTSP  S   + GYSPTSP        YSPTSP  +   A+Y+ S  +SPSSP
Sbjct: 1559 TSPFTTSPTSPFSSFAGAGGYSPTSPGGG-----YSPTSPLMD-GGARYATSPQFSPSSP 1612

Query: 1713 RLSPAS----PYSPTSPNYSPTSSSYSPTSPS----YSPSSPT----------------- 1747
              SP S    P SP SPNYSPTS SYSPTSP+    YSP+SP                  
Sbjct: 1613 SFSPTSPVHRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPSY 1672

Query: 1748 -YSPSSPYNAGGGNP----------------DYSPSSP-------QYSPSA-GYSPSAPG 1782
              +  + + AG  +P                 YSP+SP       Q SP++  YSP++P 
Sbjct: 1673 SPTSPNLHGAGPTSPSYSPASPSWSPTSPEHSYSPTSPSFQRPAMQQSPTSPNYSPTSPS 1732

Query: 1783 YSP------SSTSQYTPQTNRDD 1799
            +SP       S +QY+P +  +D
Sbjct: 1733 FSPRTPGPSGSGNQYSPNSPTND 1755


>gi|385302705|gb|EIF46824.1| rna polymerase ii largest subunit, partial [Dekkera bruxellensis
            AWRI1499]
          Length = 1699

 Score = 1577 bits (4083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 819/1571 (52%), Positives = 1078/1571 (68%), Gaps = 110/1571 (7%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTI 60
            ++F YS A +  V+ +QFG+LSP+EIR +SV ++E+ E  +    KP+ GGL+DPRLG+I
Sbjct: 2    SKFEYSSAPLRTVQEIQFGLLSPEEIRAISVAKVEYPEIMDPVTMKPRMGGLNDPRLGSI 61

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH- 119
            DR  KC+TC  +M ECPGHFGH+ELAKP+FHIGFM  +  +   VC NC K+L DE  + 
Sbjct: 62   DRNFKCQTCGEDMKECPGHFGHIELAKPVFHIGFMPKIKKLCECVCMNCGKLLLDEHTNP 121

Query: 120  KFKQALKIRNPKNRLKKILDACKNKTKCE------GGDEIDVPGQDGEEPLKKNKGGCGA 173
             F  A+KIR+PK R + + + CK K  CE      G +E +  GQ        ++GGCG+
Sbjct: 122  HFAAAIKIRDPKKRFQAVWNLCKTKMVCEVDPGEEGEEEEEGNGQXASSHF--HRGGCGS 179

Query: 174  QQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
             QP +  +G+K+   ++ +   +DD EQ    +ER+Q + AE VLGV + IS  DC+ LG
Sbjct: 180  IQPTIRKDGLKLWGTWR-RASVDDDTEQ----IERRQ-VHAEEVLGVFRHISAADCEKLG 233

Query: 234  LNPKYARPDWMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNG 283
             + ++ARP+WMIL VLP+PPPPV          R  DDLT++LA I++ N N+++ + +G
Sbjct: 234  FSNEWARPEWMILTVLPVPPPPVRPSVAFTDSKRSEDDLTYKLADILKANINVQKFQMDG 293

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGK 343
            +P H+I+EF  LLQ+H+ATY DN++ GQP+A Q+SGRPIKSI +RL+ KEGR+RGNLMGK
Sbjct: 294  SPQHVINEFEALLQYHVATYMDNDIAGQPQALQKSGRPIKSIRARLRGKEGRLRGNLMGK 353

Query: 344  RVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKT 403
            RVDFSAR+VI+ DP I +DQ+GVP ++A  LTYPE VTPYNI +L +LV  GP+  PG  
Sbjct: 354  RVDFSARSVISGDPNIELDQVGVPRTVAQTLTYPEVVTPYNIGQLTQLVRNGPNQYPG-- 411

Query: 404  GAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
             A+Y+IRD G+R+DLR+ K++ D  L+ G+KVERHL DGD VLFNRQPSLHKMS+M H+ 
Sbjct: 412  -ARYVIRDSGERIDLRFNKRAGDIQLQYGWKVERHLMDGDPVLFNRQPSLHKMSMMCHKX 470

Query: 464  KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
            ++MP+STFR+NLSVT+PYNADFDGDEMNMHVPQS+ET+AE+ E+  VP+ IVSPQSN+PV
Sbjct: 471  RVMPFSTFRINLSVTTPYNADFDGDEMNMHVPQSYETKAELEEICAVPRQIVSPQSNKPV 530

Query: 524  MGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNL 583
            MGIVQDTL+G RK+T RD+F+  D  MN+  W   +DG VPQP +LKPRPLWTGKQVF+L
Sbjct: 531  MGIVQDTLVGVRKMTLRDSFVAYDQLMNMCFWNPGWDGVVPQPAVLKPRPLWTGKQVFSL 590

Query: 584  IIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
             IP+ I L R        D   L+  D+ + I  G+++ G + K T+GTS+G LIH    
Sbjct: 591  TIPRGIFLQRV-------DGPPLSPRDSGMLIRNGDVMFGVVNKATVGTSSGGLIHTCMR 643

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
            E GP    + +G  Q + NYWLL N FSIGIGD IAD  TM+TI  TI+ AK+ V+ +I 
Sbjct: 644  EKGPRECARMIGSIQKVCNYWLLHNGFSIGIGDAIADPDTMKTITKTIATAKDQVQGVIX 703

Query: 704  QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
             AQ   L+PEPG T+ ESFE KV+++LN ARD AG SA+ SL +SNN+K MVTAGSKGS+
Sbjct: 704  DAQANRLQPEPGMTVRESFEQKVSKILNEARDAAGKSAETSLKDSNNVKQMVTAGSKGSY 763

Query: 764  INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
            INISQM+ACVGQQ VEG+RI FGF DR+LPHFTKDDY  ES+GFVENSYLRGLTPQE FF
Sbjct: 764  INISQMSACVGQQIVEGRRIYFGFADRSLPHFTKDDYSAESKGFVENSYLRGLTPQELFF 823

Query: 824  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
            HAM GREGLIDTAVKT+ETGYIQRRLVKA+EDIMV+YDGT RNSLGDVIQFLYGEDG+D+
Sbjct: 824  HAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVQYDGTTRNSLGDVIQFLYGEDGLDA 883

Query: 884  VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
              +E QT+D++    + F++                   Y+D  +    ++   DAE  +
Sbjct: 884  TQVEKQTIDTIGGSTAAFER------------------RYLDSTEVDDAVQRARDAEYSQ 925

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL- 1002
            L ADR  L   +  +GD +WPLPVN++R++ NAQ+ F VD  R SD+   EVV  V  L 
Sbjct: 926  LXADRAFLRKVVFPTGDDAWPLPVNIRRIVQNAQQIFHVDRARSSDLTVPEVVRRVAVLC 985

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
             ++L VV G      +AQ+NAT  F  L+RS  ASKRVL E RL R+AF+WV+G +E +F
Sbjct: 986  HDKLPVVRGSGGCLDQAQQNATYLFQCLVRSRLASKRVLHEFRLNRDAFDWVLGMVEQQF 1045

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
             +SLV PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKT
Sbjct: 1046 AKSLVNPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKT 1105

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            P+L+V+L   V    ERAK++Q A+E+TTL++VT  TE++YDPDP  T+I+ D++ V++Y
Sbjct: 1106 PALTVYLDEHVAFDIERAKSIQSAIEHTTLKNVTAVTEIYYDPDPKSTVIDADIDTVEAY 1165

Query: 1183 YEMPDEDIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
            + +PD  +     + SPWLLR++L+R  M+DK+L+M+ VA +I   F DDL  I+++DNA
Sbjct: 1166 FAIPDXKVEENLHRQSPWLLRLQLDRAKMLDKQLTMSQVAGRITDSFGDDLFVIWSEDNA 1225

Query: 1241 DKLILRIRIMNDEAPKGELNDESAEDDV---FLKKIESNMLTEMAL-------------- 1283
            + L++R RIM ++ P      ++  +D     LK +ES ML  + L              
Sbjct: 1226 ENLVIRCRIMREDKPXDADAADADAEDTEDGLLKALESQMLESITLGGIXGISRVFMMKY 1285

Query: 1284 ---------------------RGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                  G+NL  V+  + VD  RT SN  +EI+ VLGIEA RRA
Sbjct: 1286 DKTYIDSSGDFAKKKEWVLETDGINLSDVIAVDGVDPTRTYSNSFVEILSVLGIEAARRA 1345

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            L  E+  VI+FDGSYVNYRHLA+L D MTY+GHL+AI+RHG NRN+TG +MRC+FEETV+
Sbjct: 1346 LYKEILNVIAFDGSYVNYRHLALLVDLMTYKGHLIAISRHGFNRNETGALMRCTFEETVE 1405

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEML----KNAIELQLPSYME 1438
            IL +A   AE D   GV++N++LGQ+AP+GTG   LYL+ + L     +   +QLP+  E
Sbjct: 1406 ILFEAGASAELDTCDGVSQNVILGQMAPVGTGSFQLYLDQDKLATLPSDISSVQLPASAE 1465

Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTD-AQFSPYVGGMAFSPTSSPG 1497
                G   A    S TPY     +  ++   N      TD   FSP +   A S   S G
Sbjct: 1466 DGVQGEVQAEVAGSATPYQPEEFTDDFVHVDN------TDKVAFSPMITSNA-SDDKSGG 1518

Query: 1498 YSP--SSPGYS 1506
            ++    SPGYS
Sbjct: 1519 FTEYGMSPGYS 1529


>gi|403215001|emb|CCK69501.1| hypothetical protein KNAG_0C03970 [Kazachstania naganishii CBS 8797]
          Length = 1721

 Score = 1576 bits (4082), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 818/1580 (51%), Positives = 1098/1580 (69%), Gaps = 105/1580 (6%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
            YS A +  V+ VQFG+ SP+E+R +SV +I+  ET +  + + K GGL+DPRLG+IDR +
Sbjct: 6    YSSAPLRTVKEVQFGLFSPEEVRAISVAKIKFPETMDETQTRAKIGGLNDPRLGSIDRNL 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC   M+ECPGHFGH++LAKP+FH+GF+  +  +   VC +C K+L DE++ + +Q 
Sbjct: 66   KCQTCQEGMSECPGHFGHIDLAKPVFHVGFITKIKKVCECVCMHCGKLLLDENNEQMRQV 125

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK-KNKGGCGAQQPKLTIEGM 183
            + I++PK R       CK K  CE     DVP ++  +P K  ++GGCG  QP +  +G+
Sbjct: 126  MAIKDPKKRFNATWALCKTKMVCE----TDVPSEN--DPTKLVSRGGCGNTQPTVRKDGL 179

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
            K++  +K  RKK  + E   EP +R   L+ E +L + K IS ED   LG N +++RP+W
Sbjct: 180  KLVGSWK--RKKTIEGE---EPEQR--VLSTEEILNIFKHISTEDFIRLGFNEEFSRPEW 232

Query: 244  MILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            MIL VLP+PPPPV          R  DDLT +LA I++ N +L   E NGAP H I E  
Sbjct: 233  MILTVLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAE 292

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
             LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI
Sbjct: 293  SLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVI 352

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            + DP + +DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IR++G
Sbjct: 353  SGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRENG 409

Query: 414  QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
             R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M H++K++PYSTFRL
Sbjct: 410  DRIDLRYSKRAGDVQLQYGWKVERHIMDDDPVLFNRQPSLHKMSMMAHKVKVIPYSTFRL 469

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G
Sbjct: 470  NLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCG 529

Query: 534  CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
             R +T RDTF+E D  +N+L W  D+DG +P P ILKP+PLWTGKQ+ ++ IP  I+L R
Sbjct: 530  IRILTLRDTFLELDHVLNMLYWVPDWDGVIPTPAILKPKPLWTGKQILSVAIPNGIHLQR 589

Query: 594  TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
                  D    +L+  D  + I  G+++ G + KKT+G+S+G LIHV+  E GP    + 
Sbjct: 590  -----FDEGTTLLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQTCARL 644

Query: 654  LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
             G+ Q +VN+WLL N FS GIGDTIAD  T++ I +TI++AK  V+ + K+AQ   L  +
Sbjct: 645  FGNIQKVVNFWLLHNGFSTGIGDTIADGATIKEITETIAEAKKKVEEVTKEAQANLLTAK 704

Query: 714  PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
             G T+ ESFE+ V + LN ARD+AG  A+ +L+++N +K MV+AGSKGSFINI+QM+ACV
Sbjct: 705  HGMTLRESFEDNVVRFLNEARDKAGRLAEVNLNDTNFVKQMVSAGSKGSFINIAQMSACV 764

Query: 774  GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
            GQQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLI
Sbjct: 765  GQQSVEGKRIGFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLI 824

Query: 834  DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDS 893
            DTAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDG+D+ +IE Q+LD+
Sbjct: 825  DTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGIDASYIEKQSLDT 884

Query: 894  LKMKKSEFDKAFRFE-MDEENWNPNYMLQ---EYIDDLKTIKELRDVFDAEVQKLEADRY 949
            +    + F+K +R + M+ +N     +L+   E   DLK    L+ + D E ++L  DR 
Sbjct: 885  IGGSDAAFEKKYRIDLMNVQNSLDPTLLESGSEITGDLK----LQTLLDEEYKQLVKDRA 940

Query: 950  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1009
             L   +   G+S+WPLPVN++R+I NAQ+TF++D  +PSD+   +++++V++LQ +L V+
Sbjct: 941  FLRN-VFVDGESNWPLPVNIRRIIQNAQQTFRIDHSKPSDLTIRDIIDSVNELQSKLLVL 999

Query: 1010 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1069
             G+  +   AQ +A   F  L+RS  A++RVLKE+RLT+EAF WV+  IE++FL+S+V P
Sbjct: 1000 RGKSEIIERAQTDAVTLFCCLVRSRLATRRVLKEYRLTKEAFNWVLNNIEAQFLRSVVHP 1059

Query: 1070 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFL 1129
            GEM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L
Sbjct: 1060 GEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYL 1119

Query: 1130 KPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDED 1189
            K   +S +E+AK ++ A+E+TTL+SVT A+E++YDPDP  T+IEED E ++ ++ + D++
Sbjct: 1120 KDDYSSDQEKAKLIRSAIEHTTLKSVTVASEIYYDPDPRSTVIEEDEEIIQLHFSLLDDE 1179

Query: 1190 I--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1247
            +  + ++ SPWLLR+EL+R  M DK L+M  V E+I + F +DL  I+++DNA+KLI+R 
Sbjct: 1180 MESSLDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKETFKNDLFVIWSEDNAEKLIIRC 1239

Query: 1248 RIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR----------------------- 1284
            R++    PK    +  AE+D  LKKIE+ ML  + LR                       
Sbjct: 1240 RVVR---PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPNESGE 1296

Query: 1285 ------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
                        GVNL  VM    VDA R  +N  I+I+EVLGIEA R AL  E+  VI+
Sbjct: 1297 YQKVPEWVLESDGVNLAEVMQVPGVDATRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIA 1356

Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
             DGSYVNYRH+A+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A   AE
Sbjct: 1357 SDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGAAAE 1416

Query: 1393 SDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVS 1452
             D  RGV+EN++LGQ+APIGTG   + +++E L   +  Q  S +E  E G         
Sbjct: 1417 LDDCRGVSENVLLGQMAPIGTGAFDVMIDEESLMKYMPEQKISELEDGEEG--------G 1468

Query: 1453 GTPYHD--GMMSPGYLFSPNLRLSPVTDA--------QFSPYVG---GMAFSPTSSPGYS 1499
             TPY D  G+ +        L  SP+ D+         F+ Y G   G A SP  + G +
Sbjct: 1469 ATPYSDEHGLANANIDIKDELMFSPLVDSGSTDAMSGGFTAYGGAEYGGATSPFGAYGDA 1528

Query: 1500 PSSPGYSP-SSPGYSPTSPG 1518
            P+SPG+   SSPG+SPTSP 
Sbjct: 1529 PASPGFGGVSSPGFSPTSPA 1548


>gi|444321244|ref|XP_004181278.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
 gi|387514322|emb|CCH61759.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
          Length = 1726

 Score = 1573 bits (4074), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 817/1578 (51%), Positives = 1091/1578 (69%), Gaps = 86/1578 (5%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
            YS A +  ++ VQFG+ SP+EIR +SV +I   ET +  + + K GGL+DPRLG+IDR +
Sbjct: 6    YSSAPLRTIKEVQFGLFSPEEIRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC   M ECPGHFGH++LAKP+FHIGF+  +  +   +C +C K+L DE + + +Q 
Sbjct: 66   KCQTCQEGMNECPGHFGHIDLAKPVFHIGFISKIKKVCECICMHCGKLLLDEHNEQMRQI 125

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            LKI++ K R   I   CK K  C+     DVP +     L  ++GGCG  QP +  +G+K
Sbjct: 126  LKIKDSKKRFNAIWSLCKTKMICD----TDVPSEHDPTQLV-SRGGCGNAQPTVRKDGLK 180

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            ++  +K ++  +D  E  PE    ++ L+ E +L + K IS ED   +G N +++RP+WM
Sbjct: 181  LVGSWKKEKNTSDGDE--PE----QRILSTEEILNIFKHISPEDSIAMGFNEEFSRPEWM 234

Query: 245  ILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
             L VLP+PPPPV          R  DDLT +LA I++ N +L   E NGAP H I E   
Sbjct: 235  FLTVLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAES 294

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+
Sbjct: 295  LLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS 354

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + +DQ+GVP SIA  LTYPE VTPYNI+RL  LV  GP+  PG   AKY+IRD+G 
Sbjct: 355  GDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTHLVRNGPNEHPG---AKYVIRDNGD 411

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+++MP+STFRLN
Sbjct: 412  RIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVRVMPFSTFRLN 471

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVS QSN+P MGIVQDTL G 
Sbjct: 472  LSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSAQSNKPCMGIVQDTLCGI 531

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK+T RD FIE D  +N+L W  D+DG +P P ILKP+PLW+GKQ+ ++ IPK I+L R 
Sbjct: 532  RKLTLRDNFIEFDQVLNLLYWVPDWDGVIPTPAILKPKPLWSGKQILSIAIPKGIHLQR- 590

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
                 D     L+  D  + I  G+++ G + KKT+G+S+G LIHV+  E GP    K  
Sbjct: 591  ----FDEGTTFLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQICAKLF 646

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
             + Q + NYW L N FS GIGDTIAD +TM  I  TI++AK  V+ + K+AQ   L  + 
Sbjct: 647  SNIQKVTNYWFLHNGFSTGIGDTIADGETMREITGTIAEAKRKVEEVTKEAQANLLTAKH 706

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G T+ ESFE+ V + LN ARD+AG  A+ +L+++NN+K MV+AGSKGSFINI+QM+ACVG
Sbjct: 707  GMTLRESFEDNVVRFLNEARDKAGRLAEVNLNDTNNVKQMVSAGSKGSFINIAQMSACVG 766

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 767  QQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLID 826

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDG+D+  IE Q++D++
Sbjct: 827  TAVKTAETGYIQRRLVKALEDIMVHYDSTTRNSLGNVIQFVYGEDGIDAGHIEKQSIDTI 886

Query: 895  KMKKSEFDKAFRFEM--DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLA 952
                + F+K +R ++   E + NP+  L E   ++    +L+++ D E ++L  DR  L 
Sbjct: 887  GGSDAAFEKRYRIDLLNTENSLNPS--LLESGAEISGNLKLQNLLDVEYKQLVKDRTFLR 944

Query: 953  TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGE 1012
            T +   G+ +WPLPVN+KR++ NAQ+TFKVD  +PSD+   ++V  V  LQE+L V+  +
Sbjct: 945  T-VFVDGEPNWPLPVNIKRIVQNAQQTFKVDHSKPSDLTIPDIVHGVQDLQEKLLVLRDK 1003

Query: 1013 DPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEM 1072
              +  +AQ +AT  F  L+RS  A++RVL+E +L +++F+WV+  +E++FL+S+V PGEM
Sbjct: 1004 SEIMQKAQSDATTLFCCLIRSRLATRRVLQEFKLNKQSFQWVLNNVEAQFLRSVVHPGEM 1063

Query: 1073 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPG 1132
            +G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+ +L+P 
Sbjct: 1064 VGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTAYLEPA 1123

Query: 1133 VNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI-- 1190
              + +E+AK ++ A+E+TTL+SVT A+E++YDPDP  T+I ED E ++ ++ + DE+   
Sbjct: 1124 YAADQEKAKLIRSAIEHTTLKSVTVASEIYYDPDPRTTVIAEDEEIMQLHFSLMDEETEK 1183

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            + ++ SPWLLR+EL+R  M DK L+M  V EKI + F +DL  I+++DNA+KLI+R R++
Sbjct: 1184 SLDQQSPWLLRLELDRAAMNDKDLTMGQVGEKIRETFRNDLFVIWSEDNAEKLIIRCRVV 1243

Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------------------- 1284
                PK    +  AE+D  LKKIE+ ML  + LR                          
Sbjct: 1244 R---PKALDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKIPGTSGAYEK 1300

Query: 1285 ---------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
                     GVNLL VM    VDA R  +N  I+I EVLGIEA R AL  E+  VI+ DG
Sbjct: 1301 VPEWVLETDGVNLLEVMTVPGVDASRIYTNSFIDITEVLGIEAGRAALYKEVYNVIASDG 1360

Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
            SYVNYRH+A+L D MT  G L ++TRHG NR++TG +MRCSFEETV+IL +A   AE D 
Sbjct: 1361 SYVNYRHMALLVDVMTTNGSLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDD 1420

Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMTPARSPVSGT 1454
             RGV+EN++LGQ+APIGTG   + +++E ++K   E ++    +G   G TP  S  +G 
Sbjct: 1421 CRGVSENVILGQMAPIGTGSFDVMIDEESLVKYMPEQKVSELADGQAGGETPYSSD-AGL 1479

Query: 1455 PYHDGMMSPGYLFSPNLRLSPVTDAQ---FSPYVG---GMAFSPTSSPGYSPSSPGY-SP 1507
               +  +    +FSP L  S  TDA    F+ Y G   G A SP ++ G +P+SPG+ S 
Sbjct: 1480 VNTEIDVKDELMFSP-LVDSGSTDAMAGGFTAYGGGDYGSATSPFTAYGETPASPGFGSV 1538

Query: 1508 SSPGYSPTSPGYSPTSPG 1525
            SSPG+S TSP YSPTSP 
Sbjct: 1539 SSPGFSATSPAYSPTSPA 1556


>gi|296476824|tpg|DAA18939.1| TPA: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Bos
            taurus]
          Length = 1323

 Score = 1573 bits (4073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 768/1310 (58%), Positives = 980/1310 (74%), Gaps = 45/1310 (3%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL 
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
                   ERAK++ C LE+TTLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204

Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            A  +ISPWLLR+EL+R+ M D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262

Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALRGVNLL---AVMCH 1294
            N +  K +  +E     +DDVFL+ IESNMLT+M L+G+  +   +V CH
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVSVTCH 1312


>gi|365981561|ref|XP_003667614.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
 gi|343766380|emb|CCD22371.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
          Length = 1729

 Score = 1573 bits (4073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 813/1583 (51%), Positives = 1087/1583 (68%), Gaps = 110/1583 (6%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
            YS A +  V+ VQFG+ SP+E+R +SV +I   ET +  + + K GGL+DPRLG+IDR +
Sbjct: 6    YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC   M ECPGHFGH++LAKP+ H+GF+  +  +  SVC +C K+L DE + + +QA
Sbjct: 66   KCQTCQEGMNECPGHFGHIDLAKPVLHVGFIAKIKKVCESVCMHCGKLLLDEHNEQMRQA 125

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            + I++ K R   + + CK K  C+     DVP  D    L  ++GGCG  QP +  +G+K
Sbjct: 126  IAIKDSKKRFNAVWNLCKTKMICD----TDVPSDDDPTQLI-SRGGCGNAQPTVRKDGLK 180

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            ++  +K ++  ND  E  PE    ++ L+ E +L + K IS ED   LG N ++ARP+WM
Sbjct: 181  LVGSWKKEKNTNDGDE--PE----QRVLSTEEILNIFKHISPEDSTRLGFNEEFARPEWM 234

Query: 245  ILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            IL VLP+PPPPV          R  DDLT +LA I++ N +L   E NGAP H I E   
Sbjct: 235  ILNVLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAES 294

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+
Sbjct: 295  LLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS 354

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + +DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD+G 
Sbjct: 355  GDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDNGD 411

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLN
Sbjct: 412  RIDLRYSKRAGDIQLQYGWKVERHITDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLN 471

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVS QSN+P MGIVQDTL G 
Sbjct: 472  LSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSAQSNKPCMGIVQDTLCGI 531

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK+T RDTF+E D  +N+L W  D+DG +P P I+KP+PLW+GKQV ++ IP+ I+L R 
Sbjct: 532  RKLTLRDTFLEFDEVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQVLSIAIPRGIHLQR- 590

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
                 D    +L+  D  + +  G+++ G + KKT+G+S G LIHV+  E GP    K  
Sbjct: 591  ----FDEGTTLLSPKDNGMLVVDGQIIFGVVDKKTVGSSNGGLIHVVTREKGPTICAKLF 646

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
            G+ Q +VN+WLL N FS GIGDTIAD  T++ I +TI+ AK  V+++ K+AQ   L  + 
Sbjct: 647  GNIQKVVNFWLLHNGFSTGIGDTIADGSTIKEITETIADAKRKVEDVTKEAQSNLLTAKH 706

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G T+ ESFE+ V + LN ARD+AG  A+ +L++ NN+K MV+AGSKGSFINI+QM+ACVG
Sbjct: 707  GMTLRESFEDNVVRFLNEARDKAGRLAEMNLNDLNNVKQMVSAGSKGSFINIAQMSACVG 766

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQ+VEGKRI +GFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 767  QQSVEGKRIGYGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLID 826

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLG+VIQF+YGEDGMD+  IE Q+LD++
Sbjct: 827  TAVKTAETGYIQRRLVKALEDIMVHYDGTARNSLGNVIQFIYGEDGMDAAHIEKQSLDTI 886

Query: 895  KMKKSEFDKAFRFEMDEENWNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQKLEA 946
                + F+K +R ++     NP   L         E   D+K    L+ + D E ++L  
Sbjct: 887  GGSDAAFEKRYRIDL----MNPKNALDPSLLESGSEITGDVK----LQSLLDEEYKQLIK 938

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR +   +I   G+S+WPLPVN++R+I NAQ+TF++D  +PSD+   +++  +  L+ERL
Sbjct: 939  DR-KFLRKIFVDGESNWPLPVNIRRIIQNAQQTFRIDHSKPSDLTIRDIIFGLKDLEERL 997

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             V+ G+  +  +AQ +A   F  L+RS  +++R+L+E+RLT++AFEWV+  +E++FL+S+
Sbjct: 998  LVLRGKSEIIQKAQDDAITLFCCLVRSRLSTRRILQEYRLTKQAFEWVLNNVEAQFLRSV 1057

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
            V PGEM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+
Sbjct: 1058 VHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLT 1117

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            V+LK   +S +E+AK ++ A+E+TTL+S+T A+E++YDPDP  T+I ED E ++ ++ + 
Sbjct: 1118 VYLKDDYSSDQEKAKFIRSAIEHTTLKSITVASEIYYDPDPRSTVIPEDDEIIQLHFSLL 1177

Query: 1187 DEDI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            D++   + ++ SPWLLR+EL+R  M DK L+M  V E+I + F +DL  I+++DNA+KLI
Sbjct: 1178 DDETEQSLDRQSPWLLRLELDRAAMNDKDLTMGQVGERIKETFRNDLFVIWSEDNAEKLI 1237

Query: 1245 LRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------------- 1284
            +R R++    PK    +  AE+D  LKKIE+ ML  + LR                    
Sbjct: 1238 IRCRVVR---PKSMDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSQ 1294

Query: 1285 ---------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
                           GVNL  VM    VDA R  +N  I+I EVLGIEA R AL  E+  
Sbjct: 1295 SGEYQKVPEWVLETDGVNLSEVMTVPGVDATRIYTNSFIDITEVLGIEAGRAALYREVYN 1354

Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
            VI+ DGSYVNYRH+A+L D MT +G L +ITRHG NR  TG +MR SFEETV+IL +A  
Sbjct: 1355 VIASDGSYVNYRHMALLVDVMTTQGALTSITRHGFNRASTGALMRSSFEETVEILFEAGA 1414

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARS 1449
             AE D  RGV+EN++LGQ+APIGTG   + +++E L   +  Q    +EG E G      
Sbjct: 1415 SAELDDCRGVSENVLLGQMAPIGTGAFDVMIDEESLVKYMPEQKIMELEGEEDG------ 1468

Query: 1450 PVSGTPYHD--GMMSPGYLFSPNLRLSPVTDA--------QFSPYVG---GMAFSPTSSP 1496
                TPY +  G+++        L  SP+ DA         F+ Y G   G A SP  + 
Sbjct: 1469 --GATPYSNESGLINTEIDVKDELMFSPLVDAGTTDAMAGGFTAYGGADYGGATSPFGAY 1526

Query: 1497 GYSPSSPGYSP-SSPGYSPTSPG 1518
            G +P+SPG+   SSPG+SPTSPG
Sbjct: 1527 GDAPTSPGFGGVSSPGFSPTSPG 1549


>gi|366989121|ref|XP_003674328.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
 gi|342300191|emb|CCC67948.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
          Length = 1716

 Score = 1573 bits (4072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 812/1572 (51%), Positives = 1089/1572 (69%), Gaps = 93/1572 (5%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
            YS A +  V+ VQFG+ SP+E+R +SV +I   ET +  + + K GGL+DPRLG+IDR +
Sbjct: 6    YSSAPLRTVKEVQFGLFSPEEVRGISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC   M ECPGHFGH++LAKP+FH+GF+  +  +  SVC +C K+L DE + + +QA
Sbjct: 66   KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCESVCMHCGKLLLDEHNEQMRQA 125

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            + I++ K R   +   CK K  CE     DVP  D    L  ++GGCG  QP +  +G+K
Sbjct: 126  MAIKDSKKRFNAVWTLCKTKMICE----TDVPSDDDPTTLI-SRGGCGNAQPSIRKDGLK 180

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            ++  +K ++  +D  E  PE    ++ L+ E +L + K IS ED   +G + ++ARP+WM
Sbjct: 181  LVGSWKKEKNTSDGDE--PE----QRVLSTEEILNIFKHISPEDSTRMGFSEEFARPEWM 234

Query: 245  ILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            IL VLP+PPPPV          R  DDLT +LA I++ N +L   E NGAP H I E   
Sbjct: 235  ILCVLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAES 294

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+
Sbjct: 295  LLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS 354

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + +DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD+G 
Sbjct: 355  GDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDNGD 411

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLN
Sbjct: 412  RIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLN 471

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVS QSN+P MGIVQDTL G 
Sbjct: 472  LSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSAQSNKPCMGIVQDTLCGI 531

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK+T RDTFIE D  +N+L W  D+DG +P P +LKP+PLWTGKQV +  IPK I+L R 
Sbjct: 532  RKLTLRDTFIEFDQVLNMLYWVPDWDGVIPTPAVLKPKPLWTGKQVLSAAIPKGIHLQR- 590

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
                 D    +L+  D  + +  G+++ G + KKT+G+S+G LIHV+  E GP    +  
Sbjct: 591  ----FDEGTTLLSPKDNGMLVIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPTICARLF 646

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
            G+ Q +VN+WLL N FS GIGDTIAD +T++ I +TI++AK  V+++ K+AQ   L  + 
Sbjct: 647  GNIQKIVNFWLLHNGFSTGIGDTIADGQTIKEITETIAEAKKKVEDVTKEAQANLLTAKH 706

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G T+ ESFE+ V + LN ARD+AG  A+ +L++ NN+K MV+AGSKGSFINI+QM+ACVG
Sbjct: 707  GMTLRESFEDNVVRFLNEARDKAGRLAEVNLNDLNNVKQMVSAGSKGSFINIAQMSACVG 766

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 767  QQSVEGKRIGFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLID 826

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLG+VIQF+YGEDG+D+  IE QTLD++
Sbjct: 827  TAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGIDAAHIEKQTLDTI 886

Query: 895  KMKKSEFDKAFRFEMDEENWNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQKLEA 946
                  F++ +R ++     NP + L         E   DLK    L+ + D E ++L  
Sbjct: 887  GGSDVAFERRYRIDL----LNPEHSLDPTLLESGSEIAGDLK----LQALLDEEYKQLVE 938

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            DR +   EI   G+S+WPLPVN++R+I NAQ+TF++D  +PSD+   ++V  + +LQE L
Sbjct: 939  DR-RFLREIFVDGESNWPLPVNIRRIIQNAQQTFRIDHSKPSDLTIRDIVFGIKELQEHL 997

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             V+ G+  +  +AQ +A   F  L+RS  A++R+L+E++LT++AF+WV+  +ES+FL+S+
Sbjct: 998  LVLRGKSEIIEKAQSDAITLFCCLVRSRLATRRILQEYKLTKQAFQWVLNNVESQFLRSV 1057

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
            V PGEM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+
Sbjct: 1058 VHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLT 1117

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            V+LK G +S +E+AK ++ A+E+TTL+S+T A+E++YDPDP  T+I ED E ++ ++ + 
Sbjct: 1118 VYLKDGYSSDQEKAKFIRSAIEHTTLKSITVASEIYYDPDPRSTVIPEDDEIIQLHFSLM 1177

Query: 1187 DEDI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLI 1244
            D++   + ++ SPWLLR+EL+R  M DK L+M  V E+I + F +DL  I+++DNA+KLI
Sbjct: 1178 DDETEQSLDRQSPWLLRLELDRAAMNDKDLTMGQVGERIKETFKNDLFVIWSEDNAEKLI 1237

Query: 1245 LRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR-------------------- 1284
            +R R++    PK    +  AE+D  LKKIE+ ML  + LR                    
Sbjct: 1238 IRCRVVR---PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSA 1294

Query: 1285 ---------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
                           GVNL  VM    +DA R  +N  I+I+EVLGIEA R AL  E+  
Sbjct: 1295 TGEYEKVPEWVLETDGVNLSEVMTVPGIDATRIYTNSFIDIMEVLGIEAGRAALYREVYN 1354

Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
            VI+ DGSYVNYRH+A+L D MT +G L ++TRHG NR  TG +MRCSFEETV+IL +A  
Sbjct: 1355 VIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRASTGALMRCSFEETVEILFEAGA 1414

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARS 1449
             AE D  RGV+EN++LGQ+APIGTG   + +++E L   +  Q  + +E  + G     S
Sbjct: 1415 SAELDDCRGVSENVLLGQMAPIGTGAFDVMIDEESLVKYMPEQKITELEDEQDGGATPYS 1474

Query: 1450 PVSGTPYHDGMMSPGYLFSPNLR--LSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSP 1507
              SG    +  +    +FSP +    +   D  F+ Y GG++ SP  + G  PSSPG+  
Sbjct: 1475 NESGLVNTEIDVKDEMMFSPLVDSGTTEAMDGGFTEY-GGVS-SPFGAYGDGPSSPGFGD 1532

Query: 1508 -SSPGYSPTSPG 1518
             SSPG+SPTSP 
Sbjct: 1533 VSSPGFSPTSPA 1544


>gi|358387637|gb|EHK25231.1| hypothetical protein TRIVIDRAFT_85034 [Trichoderma virens Gv29-8]
          Length = 1757

 Score = 1571 bits (4069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 855/1780 (48%), Positives = 1134/1780 (63%), Gaps = 177/1780 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDR 62
            F +S A +  V+ +QFG++SP+EI+ MSV  I + ET E G  KP+ GGL+DP LG+IDR
Sbjct: 6    FTHSSAPLKTVQEIQFGLMSPEEIKSMSVAHILYPETMEEGGTKPRDGGLNDPLLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TCT  M ECPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LADE D +F 
Sbjct: 66   QFKCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADESDPEFV 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD----GEEP-LKKNKGGCGAQQPK 177
             A+  R+ K R K++   CK K +CE  D  D    +    G +P L ++ GGCG  QP+
Sbjct: 126  AAINTRDAKLRFKRVWAVCKKKRRCENEDRTDKNKDEEFAPGMKPTLVESHGGCGNVQPQ 185

Query: 178  LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLN 235
            +    +++ A ++        QE  P+   RK+T  +T E    +L+RIS+ D + +GLN
Sbjct: 186  VRQVALQLKAAFEVA------QEDGPK---RKETAPITPEMAHSILRRISESDLRNMGLN 236

Query: 236  PKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WMI+ V             +      +R  DDLT++L  IIR N N+++  R 
Sbjct: 237  SDYARPEWMIITVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIRE 296

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMG
Sbjct: 297  GSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMG 356

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  P  
Sbjct: 357  KRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHP-- 414

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
             GAKY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR
Sbjct: 415  -GAKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHR 473

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N P
Sbjct: 474  VRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGP 533

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            +MGIVQD+L G  KI +RDTF++K+  MN+++W  ++DG +PQP ILKPRP WTGKQ+ +
Sbjct: 534  LMGIVQDSLAGAYKICRRDTFLDKNQVMNLMLWVPNWDGIIPQPAILKPRPRWTGKQIIS 593

Query: 583  LIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            ++IPK+I+L      HA  DK      DT + I+ GEL+ G + KK +G+++G +IH+ +
Sbjct: 594  MVIPKEISL------HAPEDKSESPLRDTGLLIQAGELMYGLMKKKNIGSASGGVIHLCY 647

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E+GP+ A  FL   Q +V+YWLLQN  SIGIGDTI D +T+E +   I   K  V  L 
Sbjct: 648  NELGPEGAMAFLNGVQQVVSYWLLQNGHSIGIGDTIPDKQTIEKVQVHIDTQKAEVARLT 707

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
              A    LE  PG  +  +FENKV+  LN ARD+AG++ QKSL +SNN   M  +GSKGS
Sbjct: 708  AMATANELEALPGMNVRATFENKVSMALNMARDQAGTTTQKSLKDSNNAVTMAESGSKGS 767

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
             INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFF
Sbjct: 768  SINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFF 827

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D
Sbjct: 828  FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLNAQYDGTVRNSLGDIIQFLYGEDGLD 887

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAE 940
            ++ IE Q L +LKM    F+K +R ++    E +  +Y   EY ++L   K    + D E
Sbjct: 888  AMCIEKQKLGTLKMSDEAFEKKYRLDLANPPEWFRKDY---EYGNELTGDKASMALLDEE 944

Query: 941  VQKLEADRYQLA-TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
               L ADR ++     +  G+ S  LP+N+ R+I  A++ F V     S++ P +V+  V
Sbjct: 945  WDALLADRREVRDINRSKMGEESMQLPLNIGRMIETAKRVFNVKANDRSNLRPSDVIPVV 1004

Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
              +  +LK+V G+DP+S EA  +AT+ F  LLRS  A K V+KEHRL + AF+ V+GE++
Sbjct: 1005 RNVISKLKIVRGDDPISKEADASATILFKALLRSRLAFKEVVKEHRLNKLAFDHVLGELQ 1064

Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
            +R+ +S V PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK 
Sbjct: 1065 NRWDRSFVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKN 1124

Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
            IKTPS++V+L   + + +E+AK ++  +EYT LRS+T  TE++YDPD   T I EDV+ V
Sbjct: 1125 IKTPSMAVYLDTPL-AKQEQAKKLRSLVEYTNLRSITSVTEIYYDPDVQSTTIAEDVDMV 1183

Query: 1180 KSYYEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDD 1238
            +SY+ +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+ +DL  IF+D+
Sbjct: 1184 ESYFLIPDDSQDTIDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPNDLAVIFSDN 1243

Query: 1239 NADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------------ 1286
            NAD+ ++RIR +     K E  ++  EDDV LK++E+++L  + LRGV            
Sbjct: 1244 NADEQVIRIRTIRQNDEKDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTKGT 1303

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                          L  V+    VD  RT +N L ++IEV GIE
Sbjct: 1304 RLVESVDGSELALKDDIRCTQWYLDTSGSALREVLAVPGVDPTRTYTNDLWQVIEVFGIE 1363

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
              R AL+ EL  V++FDGSYVN+RH+A+LCD MTYRG + A+TRHGINR DTG +MRCSF
Sbjct: 1364 GTRAALVKELTAVLAFDGSYVNHRHIALLCDVMTYRGSISAVTRHGINRADTGALMRCSF 1423

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM 1437
            EETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG   ++L+ +ML+  I     +  
Sbjct: 1424 EETVEILLEAAATGELDDCRGISENVMLGQMAPMGTGHFDVFLDPKMLETVIS---DNSR 1480

Query: 1438 EGLEFGMTPARSPVSG--TPYHDG--MMSPGYLFSPNLRLSPVTDAQFSPYVGG------ 1487
             GL  GM      V G  TPY  G  M   GY     L L+      FSP  G       
Sbjct: 1481 MGLMPGMPVKEGEVEGAATPYDTGSPMADSGY-----LSLNSPAAGNFSPIQGAGSETPA 1535

Query: 1488 --------------MAFSPTSSPGYSPSSP------------GYSPSSP--GYSPTSPGY 1519
                           + SP S  G +                GYSPSSP  GYSPTSP  
Sbjct: 1536 GFGTEYGGGGFGGIGSMSPYSMRGATSPFSTSPTSPFSSGMGGYSPSSPNTGYSPTSPMI 1595

Query: 1520 SPTSPGY-----------------------SPTSPGYSPTSPT-----------YSPSSP 1545
                  Y                       SP SP YSPTSP+           YSP+SP
Sbjct: 1596 DGGIGRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPASPSSPRHYSPTSP 1655

Query: 1546 GY--SPTSPAYSPTSPSYSPTSPSYSPTSPS----YSPTSPSYSPTSPSYSPTSPSY--S 1597
                SPTSP+YSP SP+YSP SP+      +       +      +  +YSPTSPS+  S
Sbjct: 1656 AQFNSPTSPSYSPASPNYSPASPNLHGAGATSPSYSPASPSWSPTSPEAYSPTSPSFSKS 1715

Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
            P S     +      +      T      +   YSP SP+
Sbjct: 1716 PGSQQSPTSPSYSPTSPSFSPRTPGPGGASGNQYSPNSPA 1755



 Score = 44.3 bits (103), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 87/242 (35%), Positives = 101/242 (41%), Gaps = 85/242 (35%)

Query: 1597 SPTSPSYSPTSPAYSPT-------------------SP---------------------- 1615
            SP + ++SP   A S T                   SP                      
Sbjct: 1517 SPAAGNFSPIQGAGSETPAGFGTEYGGGGFGGIGSMSPYSMRGATSPFSTSPTSPFSSGM 1576

Query: 1616 -AYSPTSP--AYSPTSPSYSPTSPSY-----------------------SPTSPSYSPTS 1649
              YSP+SP   YSPTSP        Y                       SP SP+YSPTS
Sbjct: 1577 GGYSPSSPNTGYSPTSPMIDGGIGRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTS 1636

Query: 1650 PS-----------YSPTSPSY--SPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
            PS           YSPTSP+   SPTSP+YSP SP YSP SP+      T    SP+   
Sbjct: 1637 PSYSPASPSSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGAGATSPSYSPASPS 1696

Query: 1697 QSAKYSPSLAYSPSSPRL--SPASPYSPTSPNYSPTSSSYSPTSPS-YSPSSPTYSPSSP 1753
             S       AYSP+SP    SP S  SPTSP+YSPTS S+SP +P     S   YSP+SP
Sbjct: 1697 WSPTSPE--AYSPTSPSFSKSPGSQQSPTSPSYSPTSPSFSPRTPGPGGASGNQYSPNSP 1754

Query: 1754 YN 1755
             N
Sbjct: 1755 AN 1756


>gi|418204404|gb|AFX61756.1| RNA polymerase I largest subunit, partial [Ascosphaera variegata]
          Length = 1683

 Score = 1571 bits (4068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 848/1709 (49%), Positives = 1126/1709 (65%), Gaps = 137/1709 (8%)

Query: 18   VQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDRKMKCETCTANMAE 75
            +QFG+LSPDEI++MSVV+I + ET   +R +P+  GL+DP+LGTIDR  KC TC   + +
Sbjct: 1    IQFGLLSPDEIKKMSVVKIVYPETMDDQRQRPREEGLNDPKLGTIDRAFKCATCEQGIMD 60

Query: 76   CPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLK 135
            CPGHFGH+ELA P+FHIGF+  +  ++ +VC NC KI AD  D K+ +AL+ R+PK R  
Sbjct: 61   CPGHFGHIELASPVFHIGFLTKIKKLLETVCINCGKIKADMTDPKYAEALRYRDPKRRFD 120

Query: 136  KILDACKNKTKCEGGDEIDVPGQDGEEP-LKKNKGGCGAQQPKLTIEGMKMIAEYKAQRK 194
             I   CK+K  CE    I         P +    GGCG  QP++  EG+ ++  +K +  
Sbjct: 121  AIWRLCKDKLLCETTPIIQEDAFGNAPPQIVYGHGGCGNPQPQIRREGLTLVGTWKPE-- 178

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            K+ DQ     PV+R   +T +    V K IS  D +LLGL+ +YARP+WMI+ VLP+PPP
Sbjct: 179  KSVDQSDSAPPVKR--VITPKEAREVFKNISSGDVRLLGLSNEYARPEWMIITVLPVPPP 236

Query: 255  PV-------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIA 301
            PV             R  DDLT++LA I+R N+N+ R + +G   H + EF  LLQ+H+A
Sbjct: 237  PVRPSVLVGGSGTNQRGEDDLTYKLAEIVRANQNVARCQVDGV-GHGLQEFEALLQYHVA 295

Query: 302  TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 361
            TY DN++ GQP+A Q+S RP+K+I  RLK KEGR+R NLMGKRVDFSARTVIT DP +++
Sbjct: 296  TYMDNDIAGQPKAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSL 355

Query: 362  DQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYL 421
            D++GVP SIA  LTY E VTPYNI +L ++V  GP+  PG   AKYIIR  G++L+L   
Sbjct: 356  DEVGVPVSIARTLTYTEVVTPYNISKLVQMVNNGPNIHPG---AKYIIRPTGEKLNLVGN 412

Query: 422  KKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP 480
            K  +    L+ G+KVERH+ DGD +LFNRQPSLHK S+M HR+++MPYSTFRLNLSVT+P
Sbjct: 413  KTPNPGRLLQYGFKVERHILDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTP 472

Query: 481  YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
            YNADFDGDEMN+HVPQS E+RAE+ EL +VP  IVSPQ N P+MGIVQDTL G  KI +R
Sbjct: 473  YNADFDGDEMNLHVPQSEESRAELKELALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRR 532

Query: 541  DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD 600
            DTF+ K+  MNI+MW  D+DG +PQP I+KPRP WTGKQ+ ++++P  +NL R     A 
Sbjct: 533  DTFLTKEHVMNIMMWVPDWDGVIPQPAIIKPRPRWTGKQIISMVLPSGLNLLRLDKDGAP 592

Query: 601  NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
              +      D+   I  GEL+ G   KKT+G + G +IH I+ E GPD    F   TQ +
Sbjct: 593  LAERFSPINDSGCFIHGGELMFGQFSKKTVGATGGGVIHTIFNEYGPDVCMSFFNGTQRV 652

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            VNYWLL N FSIGIGDTI DAKT+  I + + + K+ V+++   A   +L+P PG  + E
Sbjct: 653  VNYWLLHNGFSIGIGDTIPDAKTVAKIEEAVRERKDEVEDITDDATRDALDPLPGMNIRE 712

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FE+KV++ LN ARD+AG+  +KSL + N+   M  +GSKGS INISQM A VGQQ+VEG
Sbjct: 713  TFESKVSRALNNARDDAGNVTEKSLKDCNHGVQMARSGSKGSTINISQMMAIVGQQSVEG 772

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+
Sbjct: 773  KRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTA 832

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQR+LVKA+E++MVKYDGTVRNSLGDV+QF+YGEDG+D   IE+Q +D +     +
Sbjct: 833  ETGYIQRKLVKALEEVMVKYDGTVRNSLGDVVQFIYGEDGLDGAHIENQRVDVITCSDEK 892

Query: 901  FDKAFRFE-MDEENWNPNYMLQ---EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIA 956
            F + FR + MD +   P  +L+   E  DD++  K L    D E ++L+ DR  L T + 
Sbjct: 893  FRQRFRVDFMDPDYTIPPDLLEHGKEIADDIEAQKYL----DEEWEQLQKDRNFLRT-VC 947

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
               +    LP+N++R++  A+ TF++     SD+HP EV+  V +L +RL +V G+D +S
Sbjct: 948  KEDEEMMQLPINVQRILETAKTTFRIREGTVSDLHPSEVIPQVRELLDRLVIVRGDDSIS 1007

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
             EAQ++ATL F   LRS  A +R++ E+ L + A + V+G IE+RF +++ +PGEM+G +
Sbjct: 1008 REAQESATLLFMCQLRSRLAFRRLVVEYSLNKLALQHVLGAIENRFARAIASPGEMVGVL 1067

Query: 1077 AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNST 1136
            AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVAK IKTPS++V+  P +   
Sbjct: 1068 AAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKNIKTPSMTVYQVPELAGN 1127

Query: 1137 KERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI--APEK 1194
            ++  K ++  +E+TTLRSV E  E++YDPD   T+IE D + V++Y+ +P ED+   PE+
Sbjct: 1128 QDAVKVLRSKVEHTTLRSVAEMIEIYYDPDIRNTVIEADKDMVETYFIIP-EDVQEKPEE 1186

Query: 1195 ISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEA 1254
             S WL+R+ L+   ++DK L++  VA++I   F++D+  +F+DDN+D+ ++RIR +    
Sbjct: 1187 QSQWLVRLVLSHIKLIDKGLTVQDVADRIKALFENDVNVMFSDDNSDQPVIRIRPL---- 1242

Query: 1255 PKGELNDESAED----DVFLKKIESNMLTEMALRGVN----------------------- 1287
             KG L+D+   D    D  LK  +++ML    LRGV+                       
Sbjct: 1243 -KGALDDDEEGDGNEMDHTLKIFQAHMLDHCTLRGVSGVERAFINEKTHARIMPDGSLSK 1301

Query: 1288 ------------------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
                              L  V+  + VDA RT SN  IEI+EV GIEA R ALL EL  
Sbjct: 1302 SAEDDNCKEWILETSGSALADVLAIDGVDATRTYSNQFIEILEVFGIEATRTALLRELTQ 1361

Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
            V++FDGSYVN+RHLA+L D MT RG LMA+TRHGINR+DTG +MRCSFEETV+ILL+AA 
Sbjct: 1362 VLAFDGSYVNHRHLALLVDIMTSRGFLMAVTRHGINRSDTGALMRCSFEETVEILLEAAA 1421

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARS 1449
            FAE D  RGV+EN++LGQ+AP GTG+  +YL+  ML   +       M+  +   T   +
Sbjct: 1422 FAELDDCRGVSENLILGQMAPAGTGEFDVYLDQNMLMGVVSTNAGLGMDAGDV-KTSMLA 1480

Query: 1450 PVSGTPYHDGMMSPGYLF----SPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGY 1505
              + TPY  G      +F     P  + SP+   Q S       F+  + PG+   SPG 
Sbjct: 1481 EGAATPYDAGSPMQESMFVGMGDPESKFSPIR--QVSGGETPQGFTDYAGPGFGGYSPGG 1538

Query: 1506 SPSSPGY------------------------SP----------TSPGYSPTSPGYSPTSP 1531
            + S  GY                        SP          +SPG+SPTSP ++PTSP
Sbjct: 1539 ARSPGGYSPSSPLSTSPTSPSYSPSSGYSPTSPAIGITSPRFMSSPGFSPTSPSFAPTSP 1598

Query: 1532 GYSPTSPTY----SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTS 1586
             YSPTSP Y    SP+SP YSPTSP  SPTSP+YSPTSP+YSPTSP ++SP+SP+YSPTS
Sbjct: 1599 AYSPTSPMYAAGASPTSPSYSPTSPGRSPTSPNYSPTSPTYSPTSPAAFSPSSPNYSPTS 1658

Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
            P+        SPT    SPTSP Y+PTSP
Sbjct: 1659 PALGGAGRHLSPT----SPTSPKYTPTSP 1683



 Score =  132 bits (332), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/141 (56%), Positives = 94/141 (66%), Gaps = 26/141 (18%)

Query: 1613 TSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
            TSPA   TSP +  +SP +SPTSPS++PTSP+YSPTSP Y+  +   SPTSP+YSPTSPG
Sbjct: 1569 TSPAIGITSPRFM-SSPGFSPTSPSFAPTSPAYSPTSPMYAAGA---SPTSPSYSPTSPG 1624

Query: 1673 YSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSS 1732
             SPTSP+YSPTSPTYSPTSP+            A+SPSSP       YSPTSP       
Sbjct: 1625 RSPTSPNYSPTSPTYSPTSPA------------AFSPSSPN------YSPTSPALGGAGR 1666

Query: 1733 SYSPTSPSYSPSSPTYSPSSP 1753
              SPT    SP+SP Y+P+SP
Sbjct: 1667 HLSPT----SPTSPKYTPTSP 1683



 Score =  106 bits (264), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 87/138 (63%), Gaps = 29/138 (21%)

Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
            TSP+   TSP +  +SPG+SPTSPS++PTSP YSPTSP Y         +   SP+SP  
Sbjct: 1569 TSPAIGITSPRFM-SSPGFSPTSPSFAPTSPAYSPTSPMY---------AAGASPTSP-- 1616

Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP-TYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
                 YSPTSP  SPTS +YSPTSP+YSP+SP  +SPSS        P+YSP+SP    +
Sbjct: 1617 ----SYSPTSPGRSPTSPNYSPTSPTYSPTSPAAFSPSS--------PNYSPTSPALGGA 1664

Query: 1774 AGY----SPSAPGYSPSS 1787
              +    SP++P Y+P+S
Sbjct: 1665 GRHLSPTSPTSPKYTPTS 1682



 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 83/157 (52%), Gaps = 47/157 (29%)

Query: 1663 SPAYSPTSPG--YSP---------------------------------------TSPSYS 1681
             P +   SPG   SP                                       +SP +S
Sbjct: 1528 GPGFGGYSPGGARSPGGYSPSSPLSTSPTSPSYSPSSGYSPTSPAIGITSPRFMSSPGFS 1587

Query: 1682 PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSP- 1739
            PTSP+++PTSP+Y+P S  Y+     SP+SP  SP SP  SPTSPNYSPTS +YSPTSP 
Sbjct: 1588 PTSPSFAPTSPAYSPTSPMYAA--GASPTSPSYSPTSPGRSPTSPNYSPTSPTYSPTSPA 1645

Query: 1740 SYSPSSPTYSPSSPYNAGGGN--PDYSPSSPQYSPSA 1774
            ++SPSSP YSP+SP   G G      SP+SP+Y+P++
Sbjct: 1646 AFSPSSPNYSPTSPALGGAGRHLSPTSPTSPKYTPTS 1682


>gi|223992753|ref|XP_002286060.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
            pseudonana CCMP1335]
 gi|220977375|gb|EED95701.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
            pseudonana CCMP1335]
          Length = 1627

 Score = 1568 bits (4061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 825/1659 (49%), Positives = 1074/1659 (64%), Gaps = 181/1659 (10%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQ------------IEHGETTERGKPKPG 50
            T F +S A + +++ +QFGI++P+E+RQ SV Q            +   ET   G+P  G
Sbjct: 22   TNFGHSSARLRRIKKLQFGIINPEELRQYSVTQAITVNGRKIPAGVTRYETYMSGQPVYG 81

Query: 51   GLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCS 110
            G++DPRLG +  K             PG+FGH+ELA+P++H GF+   L  +R VCF+CS
Sbjct: 82   GVNDPRLGDLHDKSD-----------PGYFGHIELARPVYHQGFIDVTLKALRCVCFHCS 130

Query: 111  KILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGG 170
            +I  ++ ++KF++A +IRN K RL  +    + K KC+                      
Sbjct: 131  RITMEDTEYKFQRARQIRNRKRRLDAMHALIRPKKKCDH--------------------- 169

Query: 171  CGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLP-EPVERKQTLTAERVLGVLKRISDEDC 229
            C   QPK T  G+ +  EY       D+ E++P    ++KQ ++A++ + + K++ D++ 
Sbjct: 170  CNGYQPKYTKVGLHVEIEYA------DEMERVPGSSGDKKQFMSAQKAVDIFKKMRDDEV 223

Query: 230  QLLGLNPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRR 278
            + LGL+  +ARP+WM + V+P+PP  VRPS           DDLTHQL  I++ N  L+ 
Sbjct: 224  KALGLDVTWARPEWMCVSVMPVPPLHVRPSVVMGGGAQSSEDDLTHQLVNIVKSNIALKT 283

Query: 279  QERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRG 338
              +NG P  I+ +F Q LQ ++A + +NE+ G P+ TQRSGRP+K++  RLKAKEGRIRG
Sbjct: 284  AIQNGEPNIIVEQFEQALQHNVAAFVNNEMRGMPQITQRSGRPLKTLAQRLKAKEGRIRG 343

Query: 339  NLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHP 398
            NLMGKRVDFSARTVIT DP + I Q+GVP S+A+NLT P  VTP+NI+ L  LV  GP  
Sbjct: 344  NLMGKRVDFSARTVITADPNLGIHQVGVPRSVAMNLTVPTRVTPFNIQELSALVANGPTE 403

Query: 399  PPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSI 458
             PG   AK+IIR DG R+DLRY+K  SD  L  G+ VERHL DGD VLFNRQPSLHKMSI
Sbjct: 404  HPG---AKHIIRSDGLRIDLRYVKNKSDLLLANGWIVERHLRDGDIVLFNRQPSLHKMSI 460

Query: 459  MGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 518
            MGH  K++ +STFRLNLS TSPYNADFDGDEMN+HVPQS   RAE   +M  P+ IVS Q
Sbjct: 461  MGHMAKVLDWSTFRLNLSCTSPYNADFDGDEMNLHVPQSLPARAEAELMMHSPRVIVSGQ 520

Query: 519  SNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGK 578
            SNRPVMGIVQD+LL  +K+TKRD F++KD+ MNILMW ED+DG++P P I +P  LWTGK
Sbjct: 521  SNRPVMGIVQDSLLAVQKMTKRDVFVKKDLMMNILMWVEDWDGRIPPPAIYRPEELWTGK 580

Query: 579  QVFNLIIPKQINLFRTAAWHADNDKG----ILTAGDTLVRIEKGELLSGTLCKKTLGTST 634
            Q+ ++I+PK INL   A     N+ G       A D LVR+ +GEL+ GT+ KKT+G+  
Sbjct: 581  QIMSMILPK-INLTGKA-----NNGGPGPNTFNAYDNLVRVMEGELIEGTIDKKTIGSGM 634

Query: 635  GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKA 694
            G LIH  W +VG +   +F+  TQ + NYW+LQ++FSIG+ DTIAD  TME I  TI+KA
Sbjct: 635  GGLIHTAWLDVGHEDTARFMNQTQVVTNYWVLQSSFSIGVCDTIADFATMEQIASTINKA 694

Query: 695  KNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAM 754
            K  V +L++Q Q   LE +PGRTM+ESFE  VN+VLNTARD AG SAQ SL E+N++KAM
Sbjct: 695  KLQVLDLVRQGQRGELETQPGRTMIESFEQFVNKVLNTARDHAGKSAQASLDETNSVKAM 754

Query: 755  VTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLR 814
            VTAGSKGSFINISQ+ ACVGQQNVEG RIP+GF  RTLPHF+KDD GPESRGFVENSYL 
Sbjct: 755  VTAGSKGSFINISQIIACVGQQNVEGNRIPYGFKRRTLPHFSKDDLGPESRGFVENSYLS 814

Query: 815  GLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQF 874
            GLTPQEFFFHAMGGREGLIDTA KT+ETGYIQRRLVKAME +M +YDGT+R S G ++QF
Sbjct: 815  GLTPQEFFFHAMGGREGLIDTACKTAETGYIQRRLVKAMETVMARYDGTLRTSGGQIVQF 874

Query: 875  LYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE-----ENWNPNYMLQEYIDDLKT 929
            LYGEDGMD+VWIE Q+ DSL + K EFD+ +    D+     ++ N  ++  E I+D + 
Sbjct: 875  LYGEDGMDAVWIERQSFDSLTLNKREFDERYLLHSDDPDFGYDDQNIPFLEAEVIEDCRH 934

Query: 930  IKELRDVFDAEVQKLEADRYQLAT-----EIATSGDSSWPLPVNLKRLIWNAQKTFKVDP 984
              E++ + D E++ L+ D+  L       E     D +   P N+KR+I NA + F++D 
Sbjct: 935  NPEVQQMLDREMEVLKEDQAMLRIIMANREAGRESDVNSYAPGNVKRVIQNALRQFQIDK 994

Query: 985  RRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEH 1044
              PS++HP +V+E ++ +  RL VV G+D LSVEAQ NAT  + IL+RS  ASKRVL+E+
Sbjct: 995  GLPSNLHPKDVIEKIEAMLRRLVVVVGDDLLSVEAQNNATTLYRILIRSYLASKRVLREY 1054

Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
            RL+  A  WV+GEIE+RF  + V+PGEM G +AAQSIGEPATQMTLNTFHYAGVSAKNVT
Sbjct: 1055 RLSEAALIWVLGEIEARFHHAKVSPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVT 1114

Query: 1105 LGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYD 1164
            LGVPRL+EIINVAK +KTP L+++L+  V+   + AK V   +EYT L  +T+ TE++YD
Sbjct: 1115 LGVPRLKEIINVAKTVKTPGLTIYLQNHVSGDADVAKLVHSMIEYTVLTDLTKLTEIYYD 1174

Query: 1165 PDPMGTIIEEDVEFVKSYYEMPDE-DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKI 1223
            PDP+ TI+ +D EFVK YYEM +E +    ++SPW+LRIELN+ +MVDKK+ M  +A +I
Sbjct: 1175 PDPVNTIVAKDREFVKEYYEMGEETEEDLRRLSPWVLRIELNQVVMVDKKIKMNEIAAEI 1234

Query: 1224 NQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESA-------------EDDVFL 1270
              E+  DL  + +DDNAD L+ RIRI+ND  P  +  DE               EDDVFL
Sbjct: 1235 ANEYGSDLNVLVSDDNADDLVARIRIVND-LPMVQGMDEDGNPIMTDDDVELGQEDDVFL 1293

Query: 1271 KKIESNMLTEMALRGV------------------------------------NLLAVMCH 1294
            K++E NML  + LRGV                                    NL++V+  
Sbjct: 1294 KRLEKNMLHTLKLRGVDDVKKVFMRGGAKKTVWDDEKGFGITDEWVLETDGTNLMSVLGI 1353

Query: 1295 EDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRG 1354
            + VDA RT SN ++E+  VLGIE VR A+L ELR VISFDGSYVNYRHLA L D MT  G
Sbjct: 1354 DYVDATRTISNDIVEVFMVLGIEGVRAAILSELRNVISFDGSYVNYRHLACLVDVMTMHG 1413

Query: 1355 HLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
            HLMA+ RHGINR ++GP++RCSFEETVD+L DAA FAE + LRGVTENIM+GQLA +GTG
Sbjct: 1414 HLMAVDRHGINRVESGPLLRCSFEETVDMLNDAACFAEEEVLRGVTENIMMGQLARVGTG 1473

Query: 1415 DCSLYLNDEMLKNAIELQ-----------------LPSYMEG-------------LEFGM 1444
            D  L L+++ +   ++L+                 LP +                L  G 
Sbjct: 1474 DMDLLLDEQKVLLWMDLRQTRNWGSWAALVCQHRMLPLHSRLLKCLHLLMLVDSVLRLGD 1533

Query: 1445 TPARSPVSGTPYHDGMMSPGY----LFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSP 1500
            +P     +    +D    P +     F  NL L         P +    FS ++      
Sbjct: 1534 SPLVHTATSGKLNDSWYIPRHALSSFFVSNLLLR-------CPSLQTGIFSNSNKSCIFT 1586

Query: 1501 SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT 1539
            + P   P    Y      Y PTSP YSPTSP YSPTSP 
Sbjct: 1587 NKPCLQP----YVTCVQSYDPTSPAYSPTSPAYSPTSPV 1621



 Score = 47.0 bits (110), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 22/33 (66%), Positives = 22/33 (66%)

Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
            P    Y     SY PTSPAYSPTSPAYSPTSP 
Sbjct: 1589 PCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSPV 1621



 Score = 45.8 bits (107), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 21/33 (63%), Positives = 22/33 (66%)

Query: 1584 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA 1616
            P    Y     SY PTSP+YSPTSPAYSPTSP 
Sbjct: 1589 PCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSPV 1621



 Score = 45.8 bits (107), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 22/32 (68%)

Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP 1629
            P    Y     +Y PTSPAYSPTSPAYSPTSP
Sbjct: 1589 PCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSP 1620



 Score = 45.8 bits (107), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 22/32 (68%)

Query: 1640 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
            P    Y     SY PTSP+YSPTSPAYSPTSP
Sbjct: 1589 PCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSP 1620



 Score = 45.4 bits (106), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 21/32 (65%)

Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1678
            P    Y     SY PTSPAYSPTSP YSPTSP
Sbjct: 1589 PCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSP 1620



 Score = 44.7 bits (104), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 22/33 (66%)

Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
            P    Y     SY PTSP+YSPTSP+YSPTSP 
Sbjct: 1589 PCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSPV 1621



 Score = 44.7 bits (104), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 20/33 (60%), Positives = 22/33 (66%)

Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1665
            P    Y     SY PTSP+YSPTSP+YSPTSP 
Sbjct: 1589 PCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSPV 1621



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
            P    Y     +Y PTSPAYSPTSP+YSPTSP
Sbjct: 1589 PCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSP 1620



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1587
            P    Y     SY PTSP+YSPTSP+YSPTSP
Sbjct: 1589 PCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSP 1620



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
            P    Y     SY PTSP+YSPTSP+YSPTSP
Sbjct: 1589 PCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSP 1620



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 1570 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1601
            P    Y     SY PTSP+YSPTSP+YSPTSP
Sbjct: 1589 PCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSP 1620



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
            P    Y     SY PTSP+YSPTSP+YSPTSP
Sbjct: 1589 PCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSP 1620



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1580
            P    Y     SY PTSP+YSPTSP+YSPTSP
Sbjct: 1589 PCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSP 1620



 Score = 44.7 bits (104), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 22/32 (68%)

Query: 1619 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
            P    Y     SY PTSP+YSPTSP+YSPTSP
Sbjct: 1589 PCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSP 1620



 Score = 43.9 bits (102), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 20/35 (57%), Positives = 23/35 (65%)

Query: 1539 TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP 1573
            T  P    Y     +Y PTSP+YSPTSP+YSPTSP
Sbjct: 1586 TNKPCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSP 1620



 Score = 43.5 bits (101), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 22/32 (68%)

Query: 1612 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
            P    Y     +Y PTSP+YSPTSP+YSPTSP
Sbjct: 1589 PCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSP 1620



 Score = 43.1 bits (100), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 21/33 (63%)

Query: 1654 PTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
            P    Y     +Y PTSP YSPTSP+YSPTSP 
Sbjct: 1589 PCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSPV 1621



 Score = 42.4 bits (98), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 20/32 (62%)

Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
            P    Y      Y PTSP+YSPTSP YSPTSP
Sbjct: 1589 PCLQPYVTCVQSYDPTSPAYSPTSPAYSPTSP 1620



 Score = 41.6 bits (96), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 20/27 (74%)

Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
            Y     SY PTSP+YSP+SP YSP+SP
Sbjct: 1594 YVTCVQSYDPTSPAYSPTSPAYSPTSP 1620



 Score = 40.8 bits (94), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 21/29 (72%)

Query: 1719 PYSPTSPNYSPTSSSYSPTSPSYSPSSPT 1747
            PY     +Y PTS +YSPTSP+YSP+SP 
Sbjct: 1593 PYVTCVQSYDPTSPAYSPTSPAYSPTSPV 1621


>gi|3169691|gb|AAC17924.1| RNA polymerase II largest subunit, partial [Pyropia yezoensis]
          Length = 1685

 Score = 1566 bits (4055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 855/1717 (49%), Positives = 1098/1717 (63%), Gaps = 180/1717 (10%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD----HKFKQAL-KIRN 129
            ECPGHFG +ELAKPMFH GFM   L ++R VC+ CS++L  + D     K  +A+ K+ +
Sbjct: 1    ECPGHFGFIELAKPMFHAGFMGMTLKLLRCVCYFCSRLLITKVDDPGVQKILKAVSKMES 60

Query: 130  PKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEY 189
               RL+ +   C  + KC             E P      GCG +QPK   EG+K+ A++
Sbjct: 61   RAARLRIMSGLCTAR-KC----------LITESPDGGASTGCGHEQPKYKREGLKIRADF 109

Query: 190  KAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL 249
                    D +  P   ERKQ ++AE+VL V KRISD D +L+GL+ ++ARP+W+IL +L
Sbjct: 110  P---DDGADVDGAPAN-ERKQNVSAEKVLSVFKRISDNDAELMGLSARWARPEWLILTLL 165

Query: 250  PIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFH 299
            P+PPP VR S          DDLTH LA+I+++N  LR  E +GAPAH ++E   LLQFH
Sbjct: 166  PVPPPHVRTSIMMDATQRGEDDLTHNLAVIVKNNTALRNLEGHGAPAHRLAEQIFLLQFH 225

Query: 300  IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTI 359
            +ATY +N+LPG PRA Q+SGRP+KSI  RLK KEGR+RGNLMGKRVDFSARTVITPDP +
Sbjct: 226  VATYMNNDLPGMPRAAQKSGRPLKSISQRLKGKEGRLRGNLMGKRVDFSARTVITPDPNL 285

Query: 360  NIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLR 419
             +DQ+GVP+SIA NLT+PETVT YNIE +++LVE GP   P    AKYI RDDG +++L 
Sbjct: 286  RLDQVGVPFSIAKNLTFPETVTAYNIEEMQQLVENGPDEYPD---AKYIQRDDGYQVNLA 342

Query: 420  YLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTS 479
            Y++  +D  LE+GYKV RH+ +GDF++FNRQPSLHKMSIMGHRIK+MPYSTFRLNLSVTS
Sbjct: 343  YVRNRADVQLEIGYKVVRHITNGDFIVFNRQPSLHKMSIMGHRIKVMPYSTFRLNLSVTS 402

Query: 480  PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 539
            PYNADFDGDEMN+HVPQ+  TRAEV+ELMMVP+CIVSPQ N+PVMGIVQDTLLGC   T 
Sbjct: 403  PYNADFDGDEMNLHVPQTHATRAEVMELMMVPRCIVSPQGNKPVMGIVQDTLLGCMLFTY 462

Query: 540  RDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHA 599
            RDTF+ +DV M++L+  E +DG +P P I+KP PLWTGKQ+F+L++P  +NL R    H 
Sbjct: 463  RDTFLRRDVTMSLLLHVEGWDGVIPPPAIIKPEPLWTGKQLFSLLLP-DVNLVRYCNTHP 521

Query: 600  DNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW 659
            D++   ++ GDT V I  GEL++G + K+T+G++   LIHV W+E GP+     +   Q 
Sbjct: 522  DDESTDISPGDTRVLIVGGELITGIVDKRTVGSAANGLIHVTWKEKGPERTCVLISAIQV 581

Query: 660  LVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMM 719
            LVN++++    SIGIGDTIADA T   +  TI+ A+  V  L ++AQ+  L   PG++MM
Sbjct: 582  LVNHYVIMRGQSIGIGDTIADAHTDANVRATITGAQAEVTQLERRAQEGELTLLPGKSMM 641

Query: 720  ESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 779
            ESFE +VN+VLN ARD +GSSAQ SL +SNN+K MV+AGSKGSFINISQ+ ACVGQQNVE
Sbjct: 642  ESFEVEVNKVLNGARDTSGSSAQLSLLKSNNIKRMVSAGSKGSFINISQICACVGQQNVE 701

Query: 780  GKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 839
            GKRI +GF  RTLPHF  DD GPESRGFVENSYL GL P EFFFHAMGGREGLIDTAVKT
Sbjct: 702  GKRISYGFRRRTLPHFRMDDLGPESRGFVENSYLIGLRPSEFFFHAMGGREGLIDTAVKT 761

Query: 840  SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKS 899
            +ETGYIQRRLVKAMED+MVKYDGTVRNS   VIQFLYGEDG+D   +E Q LD+L+    
Sbjct: 762  AETGYIQRRLVKAMEDVMVKYDGTVRNSRSSVIQFLYGEDGLDGALVEDQKLDTLRSTND 821

Query: 900  EFDKAFRFEMDEENWNPNYMLQEYIDDLKTI----------KELRDVFDAEVQKLEADRY 949
             F K  R+ + E    P+  LQ  +     +          +  R      V   E    
Sbjct: 822  SFTK--RYHLTE----PDLHLQGVVQFSVLVAGGSQRYPLGRRRRGAVSQGVGTAEEGPR 875

Query: 950  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1009
                    +G++  PL VN++RLIWNA++ F V     SD+ P ++V  V+ L  R +V+
Sbjct: 876  LPTPRGFKTGEAKLPLAVNIERLIWNAKRIFDVRQNDRSDLSPSKIVRGVELLLHRTRVL 935

Query: 1010 PGED---------------------------PLSVEAQKNATLFFNILLRSTFASKRVLK 1042
              ++                            LS  AQ NATL F + +R++ ASK VL 
Sbjct: 936  TSDEDAEVDAIAREMLPPDGSASGPQDEALKELSETAQLNATLLFQVHVRASLASKVVLS 995

Query: 1043 EHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKN 1102
            EHRLTR+AF W++ EIE+RF Q+L   GEM+G  AAQSIGEPATQMTLNTFHYAGVSAKN
Sbjct: 996  EHRLTRKAFTWLLIEIENRFQQALAPAGEMVGATAAQSIGEPATQMTLNTFHYAGVSAKN 1055

Query: 1103 VTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVW 1162
            VTLGVPRL+EIINV+K+ KTPSL V+L+       ERAK VQ  L++TTLR VT  TEV+
Sbjct: 1056 VTLGVPRLQEIINVSKRTKTPSLVVYLRGDAVHDAERAKQVQAELQHTTLRHVTHMTEVY 1115

Query: 1163 YDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEK 1222
            YDPD   TI+  D E V +YYE+PD+ +     SPWLLR+ L ++M+VD+KL+M  +  +
Sbjct: 1116 YDPDLENTIVPADEELVSAYYELPDDVV---HASPWLLRLVLAKDMVVDRKLAMNTIKNR 1172

Query: 1223 INQEFDDDLTCIFNDDNADKLILRIRI-MNDEAPKG-------ELNDESAEDDV------ 1268
            I+  F  DL  + ++DNA +L++R+R+ M +E   G          DE   D V      
Sbjct: 1173 IHAHFGGDLHVMASEDNAAELVIRVRVAMENEDKAGISDSTKPRFEDEQDADRVAAEMED 1232

Query: 1269 -------FLKKIESNMLTEMALR------------------------------------G 1285
                   FL+K+ES +L+ + L                                     G
Sbjct: 1233 EEDAEDLFLRKVESQLLSNLTLSGIPGIDKVFTRQDNKIVIDSVTGSFTKENEWLLETDG 1292

Query: 1286 VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAI 1345
            VN +AVM HEDVD  RT SN ++E  EVLGIEAVR  LL+E+R VISFDG+YVNYRHL++
Sbjct: 1293 VNFIAVMGHEDVDFTRTVSNDIVETFEVLGIEAVRATLLNEIRTVISFDGAYVNYRHLSV 1352

Query: 1346 LCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIML 1405
            L D MT+RGHLMAI+RHGINR  +  +M+CSFEET DILLDAA+  E+D L GV+E+IML
Sbjct: 1353 LVDVMTFRGHLMAISRHGINRVSSSALMKCSFEETSDILLDAAMHGETDTLTGVSESIML 1412

Query: 1406 GQLAPIGTGDCSLYLNDEMLKNAIE-----------LQLPSYMEGLEFGMTPARSPVSGT 1454
            GQLAP+GTG   L+LND  L +A+E            + P+  E  E G TP R     T
Sbjct: 1413 GQLAPLGTGSFGLFLNDAALTDAVEPETDAAASARIARSPAMPES-ERGYTPGREG-QRT 1470

Query: 1455 P--YHDGMMSPGYLFSPNLRLSPVTDAQFSP-YVGGMAFSP-TSSPGYSP---SSPGYSP 1507
            P    D  M+P Y +SP    +P   A FSP Y G   FSP  ++  +SP   S+     
Sbjct: 1471 PGRAFDAAMTPTYAYSPARARTPGGTA-FSPAYTGPGGFSPINATASFSPIMSSADAAGR 1529

Query: 1508 SSPGYSPTSPGYSPT---SPGYSPTSPGYSPTSPTY--------SPSSPGYSPTSPAYSP 1556
            ++PG    +PG SP    +P  SP SPGY+  SP +        +  +  Y+P SPAY  
Sbjct: 1530 ATPGR--MTPGRSPAGRFTPRMSPASPGYAAMSPRFGGGLCGGPAGGAGAYAPASPAYMA 1587

Query: 1557 TSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPAY 1610
            TSP   YSP++P+ + +SP YSP    YSPTSPS      P +   SP SP Y PTSPAY
Sbjct: 1588 TSPGMGYSPSTPALAVSSPGYSP---GYSPTSPSVGARGGPAAGYASPQSPGYVPTSPAY 1644

Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
            +      +  +     +      +    + +SP+Y P
Sbjct: 1645 ARPGTVVAAANVYSPSSPAYSPSSPNYAAASSPAYQP 1681



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 79/176 (44%), Gaps = 27/176 (15%)

Query: 1609 AYSPTSPAYSPTSPAYSP--TSPS-YSP--TSPSYSPTSPSYSPTSPSY-SPTSPSYSPT 1662
            AYSP   A +P   A+SP  T P  +SP   + S+SP   S      +     +P  SP 
Sbjct: 1484 AYSPAR-ARTPGGTAFSPAYTGPGGFSPINATASFSPIMSSADAAGRATPGRMTPGRSPA 1542

Query: 1663 ---SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSY----NPQSAKYSPSLAYSPSSPRLS 1715
               +P  SP SPGY+  SP +                  +P     SP + YSPS+P L+
Sbjct: 1543 GRFTPRMSPASPGYAAMSPRFGGGLCGGPAGGAGAYAPASPAYMATSPGMGYSPSTPALA 1602

Query: 1716 PASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYS 1771
                   +SP YSP    YSPTSPS         P++ Y A   +P Y P+SP Y+
Sbjct: 1603 V------SSPGYSP---GYSPTSPSVGARG---GPAAGY-ASPQSPGYVPTSPAYA 1645


>gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit, partial [Crassostrea gigas]
          Length = 1340

 Score = 1566 bits (4054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 773/1357 (56%), Positives = 989/1357 (72%), Gaps = 81/1357 (5%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRN--PKNRLKKILD 139
            H+ELAKP+FHIGF+   + I+R VCF CSK+L D  + K K+ L      P+ RL  + D
Sbjct: 1    HIELAKPVFHIGFLVKTIKILRCVCFFCSKLLVDPTNPKIKEILSKSKAYPRKRLVAVYD 60

Query: 140  ACKNKTKCEGGDEIDVPG-----QDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRK 194
             CK++  CEGGDE+D        Q+G++  KK  GGCG  QPK+   G+++IAE+K    
Sbjct: 61   LCKSRKVCEGGDEMDNAKLGEETQEGDQ--KKGHGGCGRYQPKIKRTGLELIAEWK---D 115

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
             N+D +      E+K  LTA+RV  + KRISD++CQ+LG++ +Y+RPDWMI+ V+P+PP 
Sbjct: 116  TNEDSQ------EKKIVLTADRVHEIFKRISDDECQVLGMDHRYSRPDWMIVTVMPVPPL 169

Query: 255  PVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
             VRP+          DDLTH+LA II+ N  LRR E+NGA +HIISE  ++LQ+H+AT+ 
Sbjct: 170  AVRPAVVMFGSARNQDDLTHKLADIIKANNQLRRNEQNGAASHIISEDMKMLQYHVATFT 229

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DNELPG P+A Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVITPDP + IDQ+
Sbjct: 230  DNELPGLPKAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLRIDQV 289

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA N+T+PE VTP+NI+R++ELV  G +  PG   AKYIIRD+G+R+DLR+  K+
Sbjct: 290  GVPRSIAQNMTFPELVTPFNIDRMQELVRRGANQYPG---AKYIIRDNGERIDLRFHPKA 346

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
            SD HL++GYKVERH+ D D+++FNRQP+LHKMS+M H++K++P+STFRLNLSVT+PYNAD
Sbjct: 347  SDLHLQIGYKVERHMQDNDYIVFNRQPTLHKMSMMCHKVKVLPWSTFRLNLSVTTPYNAD 406

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+H+PQS ET+AE+  L +VP+ I++PQ+NRPVMGIVQDTL   RK+TKRD F+
Sbjct: 407  FDGDEMNLHLPQSLETKAEISNLALVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVFL 466

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DK 603
            ++   MN+LM+   +DG VPQP ILKP+PLWTGKQ+F+L+IP + N  RT + H D  DK
Sbjct: 467  DRGQVMNLLMFLPRWDGHVPQPAILKPKPLWTGKQLFSLVIPGRTNCIRTHSTHPDEEDK 526

Query: 604  G---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
            G    ++ GDT V IE G L+SG LCKKTLGTS+GSL HV++ E G   A +  GH Q L
Sbjct: 527  GPYKWISPGDTKVLIEDGMLISGILCKKTLGTSSGSLAHVVFMEYGWVIAGEMYGHIQTL 586

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            VN WLL    SIGIGDTIAD +T   I DTI KAK++V  +I++A +  LEP PG T+ +
Sbjct: 587  VNNWLLLEGHSIGIGDTIADPQTYIDIQDTIKKAKHDVIEVIEKAHNDDLEPTPGNTLRQ 646

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FEN VN++LN ARD+ GS AQKSLS+ NN KAMV AGSKGS INISQ+ ACVGQQNVEG
Sbjct: 647  TFENMVNRILNDARDKTGSKAQKSLSDYNNFKAMVVAGSKGSKINISQVIACVGQQNVEG 706

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKT+
Sbjct: 707  KRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTA 766

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRL+KAME +MVKYDGTVRN +  ++Q  YGEDG+D+  +E QT+ +LK     
Sbjct: 767  ETGYIQRRLIKAMESVMVKYDGTVRNQVEQLVQLRYGEDGLDATHVEFQTMPTLKPSNRA 826

Query: 901  FDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGD 960
            F++ F+F+   E      + +E I DL          D E ++L  DR  L + I  +GD
Sbjct: 827  FERQFKFDATNERNMKKCLSEEVIKDLMGDALAVSQLDREWEQLREDRDILRS-IFPTGD 885

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
            S   LP NL+R+IWNAQK F++D  +P+D+HP++VVE V+ L +RL VV G D LS++A 
Sbjct: 886  SKVVLPCNLQRMIWNAQKIFRIDTHKPTDLHPIKVVEGVEDLCKRLIVVAGGDRLSIQAN 945

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
             NATL F  L+RST  +KRV +E RL+ EAFEW+IGE+ESRF Q+   PGEM+G +AAQS
Sbjct: 946  ANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEWLIGEVESRFQQAQAHPGEMVGALAAQS 1005

Query: 1081 IGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERA 1140
            +GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN++KK KTPSL+V+L        E+A
Sbjct: 1006 LGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLIGQAARDAEKA 1065

Query: 1141 KNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLL 1200
            K+V C LE+TTLR VT  T ++YDPDP  T+I ED E+V  YYEMPD D++  KIS WLL
Sbjct: 1066 KDVLCRLEHTTLRKVTANTAIYYDPDPQNTVISEDQEWVNVYYEMPDFDVS--KISAWLL 1123

Query: 1201 RIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELN 1260
            RIEL+R+ M DKKL+M  ++EKI   F DDL CIFNDDNA+KL+LRIRIMN +  K +  
Sbjct: 1124 RIELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDESKMQNE 1183

Query: 1261 DE---SAEDDVFLKKIESNMLTEMALRGVN------------------------------ 1287
            +E     EDDVFL+ IE+N+L++M L+G+                               
Sbjct: 1184 EEIVDKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPNTEDKKRISITEEGEFKAVA 1243

Query: 1288 ----------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSY 1337
                      L+ V+   DVD  RTT+N ++E+  +LGIEAVR+++  E+  VISFDGSY
Sbjct: 1244 EWILETDGTALMKVLSQRDVDPIRTTTNDIVEVFSILGIEAVRKSIEKEMNHVISFDGSY 1303

Query: 1338 VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
            VNYRHL++LCD+MT +GHLMAITRHGINR +TG + R
Sbjct: 1304 VNYRHLSLLCDSMTAKGHLMAITRHGINRQETGALAR 1340


>gi|399218278|emb|CCF75165.1| unnamed protein product [Babesia microti strain RI]
          Length = 1801

 Score = 1565 bits (4053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 861/1762 (48%), Positives = 1124/1762 (63%), Gaps = 155/1762 (8%)

Query: 6    PYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            PYS  E+ +VR + FGI  P+ +++MSV ++   E  + G P   GL+D R+GT D ++ 
Sbjct: 10   PYSSCELKRVRSIDFGIFEPEFLKRMSVCEVTSAELYKDGLPNSCGLNDLRMGTTDYRIN 69

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C TC  ++  CPGHFGH+ LAKPM+H GF+ TV+ ++R VC+NC ++L   +D +   AL
Sbjct: 70   CSTCNMDVKHCPGHFGHITLAKPMYHYGFITTVMKVLRCVCYNCGRLLISPEDPR-AMAL 128

Query: 126  KIRNPKNRLKKILDACKNKTKCE--------------------------GGDE-ID---V 155
            K R    +L ++ + C +  KCE                          G DE ID   V
Sbjct: 129  KNRPGAQKLHRMAELCVSHYKCETNIKGQTDGKADGNGLTMGSISGLSNGADEPIDGNPV 188

Query: 156  PGQDGEE--PLKKNKG---GCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
             G   E+   +KK  G   GCG  QPK   EG  ++ ++  ++K+   +    E +E K+
Sbjct: 189  GGPKAEQNGSVKKLDGIGMGCGYPQPKYYKEGPNLMIQFSDKQKELLGEAD--EYIEGKR 246

Query: 211  TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRP---------SDD 261
            TL AE  L +LKRIS+ED + LG NP  +RP W+IL VLP+PPP VRP          DD
Sbjct: 247  TLYAEEALEILKRISEEDMKALGFNPARSRPSWLILTVLPVPPPSVRPYVQFGSDRSEDD 306

Query: 262  LTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 321
            LT +L  I++ N  L++QE  G  AHII E  QLLQFHI T FDNE+PG P A+ RS +P
Sbjct: 307  LTLKLMDILKTNSQLKKQEERGVAAHIIQEMCQLLQFHITTLFDNEIPGMPVASTRSKKP 366

Query: 322  IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 381
            IK+I SRLK KEGR+RGNLMGKRVDFSARTVIT DP I ID +GVP SIA+ LT+PETVT
Sbjct: 367  IKAIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNIPIDTIGVPKSIAMTLTFPETVT 426

Query: 382  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 441
            P N   LK+ VE GPH  P   GAKYI+RDDG R DLR++++ S+  LE GYKVERH+ D
Sbjct: 427  PLNYAILKKKVEKGPHEWP---GAKYIVRDDGTRYDLRHVRRPSELQLEYGYKVERHMQD 483

Query: 442  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 501
            GD++LFNRQPSLHKMSIMGH+ KI+PYSTFRLNLSVTSPYNADFDGDEMN+H+ Q+ E R
Sbjct: 484  GDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQTHEAR 543

Query: 502  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 561
            +E+  LM+ PK IVSPQ NRPVMGIVQD+LLG  K T +DTF+ +DV MN+L W   +DG
Sbjct: 544  SEIKHLMLSPKQIVSPQGNRPVMGIVQDSLLGVSKFTMKDTFLSRDVLMNLLTWIPYWDG 603

Query: 562  KVPQPTILKPRPLWTGKQVFNLIIP---------KQINLFRTAAWHADNDKGILTAG--- 609
            +VP P I  P+ LWTGKQV ++++            INL RT+ + +   +G + A    
Sbjct: 604  RVPLPCIFYPQRLWTGKQVISILLSFDQAHLQNQININLRRTSGFSSVTGQGSVRALEMI 663

Query: 610  DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
            D+ V I + E L+GT+CK+T+G+S+GSLIHV+W E GP+  + F+   Q +VN WL++  
Sbjct: 664  DSEVTIRQNEHLTGTICKRTVGSSSGSLIHVLWHEAGPERTKDFITTLQKVVNNWLIETG 723

Query: 670  FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
            F++   D I    T++ + +++  AK+ V+ L+  AQ   LE +PG+++ ESFE +VN+ 
Sbjct: 724  FTVSCSDIITADTTLDMVAESLGAAKDRVQQLVSLAQRGKLECQPGKSLFESFEARVNKE 783

Query: 730  LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
            LN AR+++G    +SL E NN+ AMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF D
Sbjct: 784  LNEAREQSGRIVAESLDEQNNILAMVNAGSKGSSINISQIIACVGQQNVEGKRIPFGFCD 843

Query: 790  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 849
            R+LPHF K DYGPESRGFV NSYL GLTPQE FFHAMGGREG+IDTA KTSETGYIQRRL
Sbjct: 844  RSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFHAMGGREGIIDTACKTSETGYIQRRL 903

Query: 850  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM 909
            +KAMEDIMV YDGTVRNS GD++QFLYGEDGM++ ++E Q L+ L++   +  + F  + 
Sbjct: 904  IKAMEDIMVHYDGTVRNSGGDILQFLYGEDGMNAEFVEDQPLELLELDNQQLSRMFYHDF 963

Query: 910  DEENWNPNYMLQEYI-DDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
             + ++   ++L + I + + T    + V   E + L   +  +  E+ + G +   LP+N
Sbjct: 964  KDASYGVGWILDDQIRESILTDYTKQMVLMDEFKHLLEMKTLICREVFSDGAARQHLPIN 1023

Query: 969  LKRLIWNAQKTFKVDP--RRPSDMHPMEVVEAVDK-LQERLKVV---PGEDPLSVEAQKN 1022
            ++RL+  A+  F   P  RRP  M P++V + V K L ERL V+      D LS EAQ N
Sbjct: 1024 IRRLVEYAKTQFSCSPEARRP--MCPVDVAQRVRKLLDERLIVIHRASAADYLSEEAQDN 1081

Query: 1023 ATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIG 1082
            ATL     L     S+R+L+  RL+  AF+W++GE+E  F  SLV  GE +G +AAQSIG
Sbjct: 1082 ATLLIRAHLIPALNSRRILERERLSPAAFDWLLGEVERHFNLSLVHAGECVGAIAAQSIG 1141

Query: 1083 EPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKN 1142
            EPATQMTLNTFH+AGV +KNVTLGVPRL+E+INV   +KTPSL+V L+  V   +ERAK+
Sbjct: 1142 EPATQMTLNTFHFAGVGSKNVTLGVPRLKELINVVTNVKTPSLTVHLEDAVARDQERAKD 1201

Query: 1143 VQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRI 1202
            VQ  LE+TTL  V    +V YDP    TI+ +D ++V  YYE PD+++A   + PWLLR+
Sbjct: 1202 VQLQLEHTTLGHVVSYAQVIYDPHVTDTIVSQDRQWVCDYYEFPDDEVAVGSLGPWLLRV 1261

Query: 1203 ELNREMMVDKKLSMAAVAEKINQEFD-DDLTCIFNDDNADKLILRIRIMNDEAPKGELND 1261
            +L+  +M DKKL+M  V E I +EF  D+L  I+ DDN++ L+LRIR+    A   + + 
Sbjct: 1262 QLSSRVMTDKKLTMREVGECIYREFSCDELDVIWTDDNSEDLVLRIRLKTGSA---QADA 1318

Query: 1262 ESAEDDVFLKKIESNMLTEMALRGV----------------------------------- 1286
             +A +DVFL+K+ S  L  + LRGV                                   
Sbjct: 1319 PTAAEDVFLQKLMSQYLCNVTLRGVAGITKVYMREEAVTAYNEAKGQFERRNNWVLDTDG 1378

Query: 1287 -NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAI 1345
             NL  V+    V   +T SN + EI  VLGIEA RRALL ELR VISFDGSYVNYRHLA+
Sbjct: 1379 CNLEQVLPIPQVRYSKTISNDITEIFNVLGIEAARRALLRELRAVISFDGSYVNYRHLAL 1438

Query: 1346 LCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIML 1405
            LCD MT++GHLM+ITRHGINR D GP+++CSFEET++ILLDAA FA SD L GVTEN+M+
Sbjct: 1439 LCDVMTHKGHLMSITRHGINRVDRGPLIKCSFEETLEILLDAATFAVSDGLCGVTENVMM 1498

Query: 1406 GQLAPIGTGDCSLYLNDEMLKNAIE-LQLPSYMEGLEFGMTPARSPVSGTPYHDGM--MS 1462
            GQL P+GTG   + ++ + LK+A +  Q+ +   GLE+      S +S       M   S
Sbjct: 1499 GQLCPLGTGCFDVLIDADRLKDANQSFQVGA--AGLEY------SDLSSNVNSQTMSQTS 1550

Query: 1463 PGYLFSPNLRLSPVTDAQF-SPYVGGMAFSPT------SSPGYSPSSPGYSPSSPGYSPT 1515
            P   FSP   LSP    QF SP    +  SP         PG      G    + G + +
Sbjct: 1551 PDRQFSPG-HLSP---GQFSSPSQAALLLSPLLVTMEPQQPGAQGDGGGVDTRALGGTFS 1606

Query: 1516 SPGYSPTSPG--YSPTSPG-YSPTSP----TYSPSSPGYSPTSP--AYSPTSPSYSPTS- 1565
                SPTSP    SP SP   SP+SP      SPSSP  SPT P  AYSP SP +   S 
Sbjct: 1607 PVCQSPTSPTSPMSPFSPRVLSPSSPLSPRVLSPSSP-LSPTLPQRAYSPLSPVFEAASV 1665

Query: 1566 --PSYSPTSPSYSPTSPSYSPTSPSYSPTSPS----YSPTSPSYSPTSPAYSPTSPA--Y 1617
              P+YSPTSPSY+  +  YSP+SPSY   +       S TSP YSPTSP  +  SPA  Y
Sbjct: 1666 YTPAYSPTSPSYAGAAGVYSPSSPSYHAAAGVGAQPLSVTSPEYSPTSPQMNLASPAGGY 1725

Query: 1618 SPTSPAYSPTSPSYSPTSPSYS 1639
            SPT   +S TSP +SPTSP  +
Sbjct: 1726 SPT---FSTTSPKFSPTSPGIA 1744



 Score = 78.2 bits (191), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 69/153 (45%), Positives = 93/153 (60%), Gaps = 24/153 (15%)

Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSP-AYSPTSPGYSPTSPSYSPTSPT 1686
            ++SP   S  PTSP+ SP SP +SP   SPS SP SP   SP+SP  SPT P  +     
Sbjct: 1604 TFSPVCQS--PTSPT-SPMSP-FSPRVLSPS-SPLSPRVLSPSSP-LSPTLPQRA----- 1652

Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSS----YSPTSPSY 1741
            YSP SP +   S  Y+P  AYSP+SP  + A+  YSP+SP+Y   +       S TSP Y
Sbjct: 1653 YSPLSPVFEAASV-YTP--AYSPTSPSYAGAAGVYSPSSPSYHAAAGVGAQPLSVTSPEY 1709

Query: 1742 SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
            SP+SP  + +SP  AGG +P +S +SP++SP++
Sbjct: 1710 SPTSPQMNLASP--AGGYSPTFSTTSPKFSPTS 1740



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/170 (41%), Positives = 91/170 (53%), Gaps = 40/170 (23%)

Query: 1651 SYSPTSPSYSPTSPAYSPTSPGYSP--TSPSYSPTSP-TYSPTSPSYNPQSAKYSPSL-- 1705
            ++SP   S  PTSP  SP SP +SP   SPS SP SP   SP+SP         SP+L  
Sbjct: 1604 TFSPVCQS--PTSPT-SPMSP-FSPRVLSPS-SPLSPRVLSPSSP--------LSPTLPQ 1650

Query: 1706 -AYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYS 1764
             AYSP SP    AS Y+P    YSPTS SY+  +  YSPSSP+Y  +    AG G    S
Sbjct: 1651 RAYSPLSPVFEAASVYTPA---YSPTSPSYAGAAGVYSPSSPSYHAA----AGVGAQPLS 1703

Query: 1765 PSSPQYSPSA----------GYSP----SAPGYSPSSTSQYTPQTNRDDS 1800
             +SP+YSP++          GYSP    ++P +SP+S    +P  +  D+
Sbjct: 1704 VTSPEYSPTSPQMNLASPAGGYSPTFSTTSPKFSPTSPGIASPVGDSADA 1753


>gi|302410002|ref|XP_003002835.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium albo-atrum
            VaMs.102]
 gi|261358868|gb|EEY21296.1| DNA-directed RNA polymerase II subunit RPB1 [Verticillium albo-atrum
            VaMs.102]
          Length = 1756

 Score = 1565 bits (4053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 842/1762 (47%), Positives = 1128/1762 (64%), Gaps = 194/1762 (11%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            F +S A V  +  +QFG++SP++I+ MSV  + + ET +  R KP+  GL+DP LG+IDR
Sbjct: 6    FTHSSAPVKTIEEIQFGLMSPEQIKTMSVCHVIYPETMDETRTKPRDSGLNDPLLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TCT  M ECPGHFGH+ELAK ++H GF+K V  I+  VC  C K+L D +D +F+
Sbjct: 66   QFKCKTCTQAMGECPGHFGHIELAKGVYHPGFIKKVKKILEIVCLECYKVLGDRNDPEFE 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK----GGCGAQQPKL 178
            QA+  R+PK R  ++   CK K +CE   + +  G D    L++       GCG  +  +
Sbjct: 126  QAVNTRDPKQRFHRVWLHCKKKKRCENELKEEKDGPDSFPELRRQNQVPHDGCGNVKHDI 185

Query: 179  TIEGMKMIAEYKAQRKKN-DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
              + +++I +  +  +    D +++P        +TA+R  G+L+RISD+D + +GLN  
Sbjct: 186  RAKALQLIEKVTSTTEDGVKDVKEVP--------ITADRAHGILRRISDDDLRDMGLNLD 237

Query: 238  YARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGA 284
            YARP+WMI+ V             +      +R  DDLT++L  IIR N N+R+  R  +
Sbjct: 238  YARPEWMIITVLPVPPPPVRPSISMDGTGQGMRNEDDLTYKLGDIIRANGNVRQAIREAS 297

Query: 285  PAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKR 344
            PAHI  +F QLLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKR
Sbjct: 298  PAHIARDFEQLLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKR 357

Query: 345  VDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTG 404
            VDFSARTVIT D  +++D++GVP SIA  LTYPETVTPYNI +L ELV+ GP+  PG   
Sbjct: 358  VDFSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNIGKLHELVQNGPNEHPG--- 414

Query: 405  AKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIK 464
            AKY+IR DG R+DLR+ +++    LE G+KVERHL  GD+++FNRQPSLHK S+MGHR++
Sbjct: 415  AKYVIRTDGTRIDLRHHRRAGQISLEYGWKVERHLMTGDYIIFNRQPSLHKESMMGHRVR 474

Query: 465  IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 524
            +MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ EL MVP  IVSPQ N P+M
Sbjct: 475  VMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEIKELCMVPINIVSPQRNGPLM 534

Query: 525  GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLI 584
            GIVQDTL G  K+ +RD F+ K+  MNI++W  ++DG +P P IL+P P WTGKQ+ ++ 
Sbjct: 535  GIVQDTLAGAYKLCRRDVFLTKEEVMNIMLWVPNWDGIIPVPAILRPSPRWTGKQIMSMA 594

Query: 585  IPKQINLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            IP+ ++L        DN   D+G+L        I+ G+L+ G L KK +G ++G ++H++
Sbjct: 595  IPEIVSLNSLPDTKEDNSVKDEGLL--------IQSGQLMYGLLTKKVIGAASGGIVHIV 646

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E GP+AA KFL   Q  VNYWLL N FSIGIGDTI D  T+E +   I + K+ V  L
Sbjct: 647  YNEHGPEAAMKFLNGVQQTVNYWLLHNGFSIGIGDTIPDTLTIEKVQGHIDEQKDEVARL 706

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
             KQA +  LEP PG  + E+FE+KV++ LNTARD+AG++ QKSL + NN   M  +GSKG
Sbjct: 707  TKQATNNELEPSPGMNIRETFESKVSRALNTARDKAGTTTQKSLKDLNNAVTMALSGSKG 766

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EF
Sbjct: 767  SSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEF 826

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  KYDGTVRNSLGD+IQFLYGEDG+
Sbjct: 827  FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVSAKYDGTVRNSLGDIIQFLYGEDGL 886

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
            D+++IE Q +D L M   +FD  ++ ++ + N        EY +++      + + D E 
Sbjct: 887  DAIYIEKQRMDFLNMSNKKFDDRYKLDVMDANKPEELDWLEYGNEIAGDPASQQLLDEEY 946

Query: 942  QKLEADRYQLATEI--ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
            + L  DR ++  EI      D S  LP+N+ R++  A+K F V   + SD+ P +V+ AV
Sbjct: 947  EALAEDR-RVVREINFRRKDDESMQLPLNIVRIMETAKKLFNVQDFQRSDLTPQDVIPAV 1005

Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
              + +R+ VV G D LS EA  NAT+ F   +RS  A K V    RL + AF  V+GE+E
Sbjct: 1006 SSMLDRMTVVRGPDGLSKEADYNATILFKAHIRSRLAFKGVACLQRLNKLAFSHVLGELE 1065

Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
             R+ ++ ++PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+A+ 
Sbjct: 1066 GRWAKASISPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAQN 1125

Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
            IKTPS+ V+L  G N+T+E AK ++  +E+TTLRSVT  TE++YDPD   T+I  D + V
Sbjct: 1126 IKTPSMVVYLSEG-NATQEAAKALRSTVEHTTLRSVTAMTEIYYDPDLENTVIPSDTDMV 1184

Query: 1180 KSYYEMPDEDIAPEKI-SPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDD 1238
            +SY+ +PD+      + + WLLRI L+R+ M+DK+L++  VA +I  ++ +D   +F+D+
Sbjct: 1185 ESYWAIPDDSHESANLQNRWLLRITLDRQKMLDKELTVEDVASRIKADYPNDCNLVFSDN 1244

Query: 1239 NADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------------ 1286
            NAD+ ++RIR +  +  KG  ++   EDDV LK+ E+++L  + LRGV            
Sbjct: 1245 NADEQVIRIRTIKPD--KGGDDESKVEDDVMLKQFETHLLDTLTLRGVLGIERAFLNKET 1302

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                         +L +V+  E VDA RT +NHL +I EV GIE
Sbjct: 1303 KLIETDDGALLAAKADDRCQEWYLDTSGTSLSSVLMVEGVDATRTYTNHLWQINEVFGIE 1362

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            A R AL+ EL  V++FDGSYVN+RHLA+L D MTYRG + A+TRHGINR DTG +MRCSF
Sbjct: 1363 AARGALVRELTQVLAFDGSYVNHRHLALLVDVMTYRGGISAVTRHGINRADTGALMRCSF 1422

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI----ELQL 1433
            EETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG   + L+ +ML+  I     + L
Sbjct: 1423 EETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFEVLLDPKMLETVISDNSRMGL 1482

Query: 1434 PSYM--EGLEFGMTPARSPV-SGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
               M  +G E G   A +P  +G+P   G +S G   S     SP+  A      G    
Sbjct: 1483 VPGMPVKGGEMG--GAATPYDTGSPLDSGYLSLGSPSSNEGNFSPIVGAGSDDNTGFGTE 1540

Query: 1491 SPTSSPGYSPSSPGYSPSSPGY--SPTSP--------GYSPTSP--GYSPTSP------- 1531
               +  G+  +SPG + ++  +  SPTSP        GYSPTSP  GYSPTSP       
Sbjct: 1541 YGGTYGGFGGASPGRAGATSPFTTSPTSPFSSFAGAGGYSPTSPGGGYSPTSPLMDGGAR 1600

Query: 1532 -------------------GYSPTSPTYSPSSPGYSPTSPAYSPTSPS----YSPTSP-- 1566
                                + PTSP    +SP YSPTSP+YSPTSP+    YSPTSP  
Sbjct: 1601 YATSPQFSPSSPSFSPTSPVHRPTSP----ASPNYSPTSPSYSPTSPTSPRHYSPTSPAQ 1656

Query: 1567 -----------------------------------------------SYSPTSPSYSPTS 1579
                                                           SYSPTSPS+   +
Sbjct: 1657 FNSPTSPSYSPASPSYSPTSPNLHGAGPTSPSYSPASPSWSPTSPEHSYSPTSPSFQRPA 1716

Query: 1580 PSYSPTSPSYSPTSPSYSPTSP 1601
               SPTSP+YSPTSPS+SP +P
Sbjct: 1717 MQQSPTSPNYSPTSPSFSPRTP 1738



 Score = 56.2 bits (134), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/185 (39%), Positives = 92/185 (49%), Gaps = 58/185 (31%)

Query: 1655 TSP-SYSPTSPAYS-PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSP 1712
            TSP + SPTSP  S   + GYSPTSP        YSPTSP  +   A+Y+ S  +SPSSP
Sbjct: 1559 TSPFTTSPTSPFSSFAGAGGYSPTSPGGG-----YSPTSPLMD-GGARYATSPQFSPSSP 1612

Query: 1713 RLSPAS----PYSPTSPNYSPTSSSYSPTSPS----YSPSSPT----------------- 1747
              SP S    P SP SPNYSPTS SYSPTSP+    YSP+SP                  
Sbjct: 1613 SFSPTSPVHRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPASPSY 1672

Query: 1748 -YSPSSPYNAGGGNP----------------DYSPSSP-------QYSPSA-GYSPSAPG 1782
              +  + + AG  +P                 YSP+SP       Q SP++  YSP++P 
Sbjct: 1673 SPTSPNLHGAGPTSPSYSPASPSWSPTSPEHSYSPTSPSFQRPAMQQSPTSPNYSPTSPS 1732

Query: 1783 YSPSS 1787
            +SP +
Sbjct: 1733 FSPRT 1737



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 79/189 (41%), Gaps = 86/189 (45%)

Query: 1683 TSP-TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY-------------- 1727
            TSP T SPTSP      + ++ +  YSP+    SP   YSPTSP                
Sbjct: 1559 TSPFTTSPTSPF-----SSFAGAGGYSPT----SPGGGYSPTSPLMDGGARYATSPQFSP 1609

Query: 1728 ---------------SPTSSSYSPTSPSYSPSSPT----YSPSSP--YNA---------- 1756
                           SP S +YSPTSPSYSP+SPT    YSP+SP  +N+          
Sbjct: 1610 SSPSFSPTSPVHRPTSPASPNYSPTSPSYSPTSPTSPRHYSPTSPAQFNSPTSPSYSPAS 1669

Query: 1757 -----------GGG------------------NPDYSPSSPQYS-PSAGYSPSAPGYSPS 1786
                       G G                     YSP+SP +  P+   SP++P YSP+
Sbjct: 1670 PSYSPTSPNLHGAGPTSPSYSPASPSWSPTSPEHSYSPTSPSFQRPAMQQSPTSPNYSPT 1729

Query: 1787 STSQYTPQT 1795
            S S ++P+T
Sbjct: 1730 SPS-FSPRT 1737


>gi|440467914|gb|ELQ37108.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae Y34]
 gi|440478660|gb|ELQ59479.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae P131]
          Length = 1745

 Score = 1564 bits (4049), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 881/1807 (48%), Positives = 1160/1807 (64%), Gaps = 183/1807 (10%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            F  S A +  +  +QFG+L+P+EI+ MSVV +++ +T +  R KP+ GGL+DP LGT DR
Sbjct: 6    FAPSSAPLKTIEEIQFGVLAPEEIKNMSVVHVQYPDTMDETRTKPREGGLNDPLLGTTDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TC  +M  CPGHFGH+ELAKP++H GF+               KIL   +D +F 
Sbjct: 66   QYKCKTCNNDMNNCPGHFGHIELAKPVYHPGFIN-----------KTKKILEMNNDEQFA 114

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPL-------KKNKGGCGAQQ 175
            QAL++R+PK R   +  ACK K  CE    I+  G+D ++ +       K   GGCG+  
Sbjct: 115  QALRLRDPKARFAMVWKACKGKKVCE----IETGGKDEKDSIDTATGIEKVPHGGCGSTH 170

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P +  + +++ A+ +  R++   +E       + + +T E+   +LK I ++D   +GLN
Sbjct: 171  PDIRKKALQLYAKVEEAREEGMKKEV------KDKLITPEQAHHILKHIPEDDLWKMGLN 224

Query: 236  PKYARPDWMILQVLPIPPPP-------------VRPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+W+I+ VLP+PPPP             +R  DDLT++L  IIR N N+++    
Sbjct: 225  KDYARPEWLIVTVLPVPPPPVRPSISVDGTSQGMRSEDDLTYKLGDIIRANGNVKQAHAE 284

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            GAP HI +EF +LLQ+H+ATY DN++   PR+ Q+SGRPIKSI +RLK KEGR+RGNLMG
Sbjct: 285  GAPNHICTEFEELLQYHVATYMDNDIASIPRSLQKSGRPIKSIRARLKGKEGRLRGNLMG 344

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT D  I++ ++GVP SIA  LTYPETVTP+NI+RL + V  GP+  PG 
Sbjct: 345  KRVDFSARTVITGDANISLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVNGPNEHPG- 403

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              AKYI+R DG R+DLR++K      LE G KVERHL  GD+++FNRQPSLHK S+MGH+
Sbjct: 404  --AKYIVRTDGTRIDLRHVKNRGSTQLEYGQKVERHLLTGDYIIFNRQPSLHKESMMGHQ 461

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL MVP  IVSPQ N P
Sbjct: 462  VRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNSP 521

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            +MGIVQDTL G  K+ +RD F+ K+  M+I++W  D+DG +PQP IL+PRP WTGKQ+ +
Sbjct: 522  LMGIVQDTLAGTYKLCRRDVFLTKEAVMDIMLWVPDWDGIIPQPAILRPRPRWTGKQIIS 581

Query: 583  LIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            ++IP  +   +   W+  ND  +L        I+ GEL+ G L KK +G ++G +IH+ +
Sbjct: 582  MVIPDFVTTHQGGDWNPLNDDALL--------IQSGELMFGLLTKKNVGAASGGIIHICY 633

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E GP  A  FL   Q +VNYWLL N  SIGIGDTI D  T+E I   I++ K  V  L 
Sbjct: 634  NEQGPARAMAFLNGCQRVVNYWLLHNGHSIGIGDTIPDPVTIEKIQAHINEQKAEVAELT 693

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
              A    LE  PG  + E+FE+KV++ LNTAR++AG++ +KSL + NN   M  +GSKGS
Sbjct: 694  DLATTNRLEALPGMNIRETFESKVSKALNTAREKAGTTTEKSLKDINNAVTMSRSGSKGS 753

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
             INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDD+ PE+RGFVENSYLRGLTP EFF
Sbjct: 754  SINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDFSPEARGFVENSYLRGLTPSEFF 813

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  KYDGTVRNSLGD+IQF+YGEDG+D
Sbjct: 814  FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVAAKYDGTVRNSLGDIIQFIYGEDGLD 873

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQ 942
             + IE Q +D L +   +FD  ++ ++            EY +++     ++ + D E  
Sbjct: 874  GMAIEKQKMDHLNISNGKFDGMYKLDLMTATRPRELNALEYGNEIFGDPAVQQLLDEEYD 933

Query: 943  KLEADRYQLATEI--ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
             ++ADR QL  EI      D+   LP+N+ R+I NA+K FK+D  + SD+ P +V+  V 
Sbjct: 934  AIKADR-QLIREINYKKKDDNDMQLPLNVARVIENAKKLFKIDDAQRSDLKPQDVIPVVK 992

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
               ER+ VVPG+DP+S EA  N+++ F   LRS  A KR+    RL R AF+ VIGE+ES
Sbjct: 993  GFLERMVVVPGDDPISKEANYNSSILFKAQLRSRLAFKRLAVRERLNRIAFDHVIGEMES 1052

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            R+ +S V+PGEM+G +AAQSIGEPATQMTLNTFH+ G+S+KNVTLGVPRL+EI+NV+ +I
Sbjct: 1053 RWQRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFTGISSKNVTLGVPRLKEILNVSAEI 1112

Query: 1121 KTPSLSVFLKPGV--NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEF 1178
            KTP + V L P +  +  +E AK ++  +E+T LRSVT  TE++YDP+   T I+ED + 
Sbjct: 1113 KTPGMVVRLDPKMYPDFKQENAKTLRSLVEHTNLRSVTAMTEIYYDPEIQTTTIDEDADM 1172

Query: 1179 VKSYYEMPDE-DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFND 1237
            ++ +Y +P+E    P   S WLLR+ L+R+ M+DK L +  VA  I   +  DL  + +D
Sbjct: 1173 LEGHYLIPEEHQDEPSNQSRWLLRLTLDRQKMLDKNLHIEDVAASIKGAYASDLVVVHSD 1232

Query: 1238 DNADKLILRIR--IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------- 1286
            +NAD+ ++R+R  I  DE  K   N ES   D  LK++E +ML  + LRG+         
Sbjct: 1233 NNADEQVIRMRHVIKGDEEDKDGRNIES---DQILKRLEEHMLDGLTLRGIKGIERAFLN 1289

Query: 1287 --------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVL 1314
                                            +L  V+C + VD+ RT +N L +I+++L
Sbjct: 1290 KDTRLVVKPDGSLLNSKDAPECEEWYLDTQGTSLRQVLCVDGVDSVRTLTNDLYQIVDLL 1349

Query: 1315 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
            GIEA R ALL EL  V++FDGSYVN+RHLA+L D MTYRG + A+TRHGINR DTG +MR
Sbjct: 1350 GIEAARTALLGELTQVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMR 1409

Query: 1375 CSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLP 1434
            CSFEETV+ILL+AA   E D  RG++EN+MLGQLAP+GTG   + L+ +ML+  +     
Sbjct: 1410 CSFEETVEILLEAAAIGELDDCRGISENVMLGQLAPMGTGAFEVLLDPKMLETVVS---N 1466

Query: 1435 SYMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
            +   GL  G+T   S   G  TPY  G  M   GY    NL ++  T   FSP + G + 
Sbjct: 1467 NARMGLMPGLTVKGSSAEGAATPYDTGSPMGDSGY----NLGMASPTMGNFSPIMSGGSD 1522

Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
            +PT   G++    G S  S   +P   G SP      PTSP    TSPT SP S GY   
Sbjct: 1523 TPT---GFATEYGGGSLGS--MNPYGSGTSP-----RPTSP--FSTSPT-SPFSAGYG-- 1567

Query: 1551 SPAYSPTSPSYSPTSP--SYSPTSP-----SYSPTSPSYSPTSPSY----------SPTS 1593
                     SYSPTSP   YSPTSP      Y  +SPS+SP+SPS+          +  S
Sbjct: 1568 ---------SYSPTSPMAGYSPTSPMMDGGRYGASSPSFSPSSPSFQPTSPIMRHGAGDS 1618

Query: 1594 PSYSPTSPSYSPTSPA-----YSPTSPAY---SPTSPAYSPTSPSYSP---TSPSYSPTS 1642
              YSPTSP+Y P SP      YSPTSPA    SPTSP YSP SPS+SP   TSP Y   S
Sbjct: 1619 MGYSPTSPTYQPGSPTGGDNHYSPTSPAQFGASPTSPLYSPASPSFSPGGATSPMYYVGS 1678

Query: 1643 PSY-SPTSPS--YSPTSPSYSPTSPAYSPTSPG-YSPTSPSYSPTSP----------TYS 1688
            P + SPTSP+  YSPTSPS+  +    SPTSPG YSPTSPS+SP SP          +YS
Sbjct: 1679 PQHASPTSPNAHYSPTSPSFQRSPAQASPTSPGPYSPTSPSFSPRSPGRNNRSGGQDSYS 1738

Query: 1689 PTSPSYN 1695
            PTSPS++
Sbjct: 1739 PTSPSHD 1745



 Score =  114 bits (284), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 105/244 (43%), Positives = 124/244 (50%), Gaps = 63/244 (25%)

Query: 1555 SPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPAYS 1611
            SPT  ++SP  +  S +PT  +      S    +P  S TSP   PTSP S SPTSP +S
Sbjct: 1507 SPTMGNFSPIMSGGSDTPTGFATEYGGGSLGSMNPYGSGTSPR--PTSPFSTSPTSP-FS 1563

Query: 1612 PTSPAYSPTSP--AYSPTSP------------------------------------SYSP 1633
                +YSPTSP   YSPTSP                                     YSP
Sbjct: 1564 AGYGSYSPTSPMAGYSPTSPMMDGGRYGASSPSFSPSSPSFQPTSPIMRHGAGDSMGYSP 1623

Query: 1634 TSPSYSPTSPS-----YSPTSPSY---SPTSPSYSPTSPAYSP---TSPGYSPTSPSY-S 1681
            TSP+Y P SP+     YSPTSP+    SPTSP YSP SP++SP   TSP Y   SP + S
Sbjct: 1624 TSPTYQPGSPTGGDNHYSPTSPAQFGASPTSPLYSPASPSFSPGGATSPMYYVGSPQHAS 1683

Query: 1682 PTSPT--YSPTSPSYNPQSAKYSPSL--AYSPSSPRLSPASPYSPTSPNYSPTSSSYSPT 1737
            PTSP   YSPTSPS+    A+ SP+    YSP+SP  SP    SP   N S    SYSPT
Sbjct: 1684 PTSPNAHYSPTSPSFQRSPAQASPTSPGPYSPTSPSFSPR---SPGRNNRSGGQDSYSPT 1740

Query: 1738 SPSY 1741
            SPS+
Sbjct: 1741 SPSH 1744



 Score = 90.5 bits (223), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 95/238 (39%), Positives = 113/238 (47%), Gaps = 60/238 (25%)

Query: 1590 SPTSPSYSP--TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP-SYSPTSPSYS 1646
            SPT  ++SP  +  S +PT  A      +    +P  S TSP   PTSP S SPTSP +S
Sbjct: 1507 SPTMGNFSPIMSGGSDTPTGFATEYGGGSLGSMNPYGSGTSPR--PTSPFSTSPTSP-FS 1563

Query: 1647 PTSPSYSPTSP--SYSPTSPAYSPTSPGY----------------------SPTSPSYSP 1682
                SYSPTSP   YSPTSP       G                       +  S  YSP
Sbjct: 1564 AGYGSYSPTSPMAGYSPTSPMMDGGRYGASSPSFSPSSPSFQPTSPIMRHGAGDSMGYSP 1623

Query: 1683 TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSP---TSP 1739
            TSPTY P SP+             YSP+SP    ASP   TSP YSP S S+SP   TSP
Sbjct: 1624 TSPTYQPGSPTGGDNH--------YSPTSPAQFGASP---TSPLYSPASPSFSPGGATSP 1672

Query: 1740 SYSPSSPTY-SPSSPYNAGGGNPDYSPSSP--QYSPSAG-------YSPSAPGYSPSS 1787
             Y   SP + SP+SP      N  YSP+SP  Q SP+         YSP++P +SP S
Sbjct: 1673 MYYVGSPQHASPTSP------NAHYSPTSPSFQRSPAQASPTSPGPYSPTSPSFSPRS 1724



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 93/191 (48%), Gaps = 19/191 (9%)

Query: 1618 SPTSPAYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-AYSPTSPGYS 1674
            SPT   +SP  +  S +PT  +      S    +P  S TSP   PTSP + SPTSP +S
Sbjct: 1507 SPTMGNFSPIMSGGSDTPTGFATEYGGGSLGSMNPYGSGTSPR--PTSPFSTSPTSP-FS 1563

Query: 1675 PTSPSYSPTSPT--YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSS 1732
                SYSPTSP   YSPTSP  +    +Y  S      S      +  SP   + +  S 
Sbjct: 1564 AGYGSYSPTSPMAGYSPTSPMMD--GGRYGASSPSFSPSSPSFQPT--SPIMRHGAGDSM 1619

Query: 1733 SYSPTSPSYSPSSPT-----YSPSSPYNAGGG--NPDYSPSSPQYSPSAGYSPSAPGYSP 1785
             YSPTSP+Y P SPT     YSP+SP   G    +P YSP+SP +SP    SP     SP
Sbjct: 1620 GYSPTSPTYQPGSPTGGDNHYSPTSPAQFGASPTSPLYSPASPSFSPGGATSPMYYVGSP 1679

Query: 1786 SSTSQYTPQTN 1796
               S  +P  +
Sbjct: 1680 QHASPTSPNAH 1690


>gi|403223272|dbj|BAM41403.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
          Length = 1645

 Score = 1563 bits (4046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 841/1684 (49%), Positives = 1109/1684 (65%), Gaps = 98/1684 (5%)

Query: 2    DTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTID 61
            D   P+SP ++ K+R ++FGIL P+ I++MSV +I   E    G P+ GGL+D R+GT D
Sbjct: 6    DLNKPFSPCDLKKIRSIEFGILDPEIIKRMSVCEITLTELYREGVPQTGGLNDLRMGTTD 65

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
             +  C TC  ++  CPGHFGH+ LAKPM+H GFM T++ I+ SVCFNCSK+  D++D K 
Sbjct: 66   PRHVCTTCRMDLKYCPGHFGHIVLAKPMYHYGFMPTIIKILSSVCFNCSKLRLDKEDPKM 125

Query: 122  KQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIE 181
            +  LKI     RL  I    K  T C          Q   + + K +G CG  QP  T E
Sbjct: 126  RNILKIPPGAMRLNYIATMSKPITNC----------QFKSQSVSKVQG-CGYPQPIFTKE 174

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQT-LTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            G  ++ ++   +K+ +  E+  EP +  Q  L  E    VLK I+ ED + LG  P+ ++
Sbjct: 175  GPNLMIKFT--QKQREVLEEAEEPCDDIQRPLAPEEAFKVLKGITTEDMKYLGFVPERSQ 232

Query: 241  PDWMILQVLPIPPPPVRP---------SDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            P W+IL VLP+PPP VRP          DDLT +L  +++ N  ++R ++     HII E
Sbjct: 233  PSWLILNVLPVPPPAVRPYVQYGSDRSEDDLTLKLLDVLKTNNLIKRHDKRATAPHIIQE 292

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              QLLQFHI T FDN++PG P A+ RS +PIKSI +RLK KEGR+RGNLMGKRVDFSART
Sbjct: 293  MCQLLQFHITTLFDNDIPGMPVASTRSKKPIKSIRARLKGKEGRLRGNLMGKRVDFSART 352

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VIT DP I ID +GVP SIA+ LT+ ETV   N E L++ VE GPH  PG   AKYIIR+
Sbjct: 353  VITGDPNIPIDTIGVPKSIAMTLTFCETVNSLNYESLRKKVEVGPHDWPG---AKYIIRE 409

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            DG R DLR++KKSS+  LE GYKVERH+ DGD++LFNRQPSLHKMSIMGH+ KI+PYSTF
Sbjct: 410  DGTRFDLRHVKKSSELQLEYGYKVERHMQDGDYILFNRQPSLHKMSIMGHKAKILPYSTF 469

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            RLNLSVT+PYNADFDGDEMN+H+ QS ETRAEV  LM+VPK IVSPQ NRPVMGIVQD+L
Sbjct: 470  RLNLSVTTPYNADFDGDEMNLHLVQSHETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSL 529

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP----- 586
            L   K TKRDTF+ +D  M++L+W   +DGK+PQP I  P+ LWTGKQV ++++      
Sbjct: 530  LAVSKFTKRDTFLTRDELMSLLIWIPYWDGKLPQPAIFFPKNLWTGKQVISVLLTFNQAQ 589

Query: 587  --KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
                INL R  +   + D    +  D+ V I K E LSG +CKKT+G S+GSLIH++W E
Sbjct: 590  GITNINLIRDGSIKLEKDNLNCSVNDSRVIIRKNEHLSGIICKKTVGCSSGSLIHILWHE 649

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
             GP+  R FL   Q +VN W LQ  F++   D      T+  ++  + K+K  V+ L+ Q
Sbjct: 650  AGPEKCRDFLTTLQKVVNNWFLQVGFTVSCSDICCSTTTLNKVSKILDKSKKEVQKLVLQ 709

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            AQ   L+ +PG+++ ESFE +VN+ LN AR+++GS    SL+ SNN+ +MV +GSKGS I
Sbjct: 710  AQKGKLKCQPGKSLFESFEARVNKELNDAREQSGSVVASSLNISNNILSMVNSGSKGSTI 769

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ ACVGQQNVEGKRIPFGF DR+LPHF K DYGPESRGFV NSYL GLTPQE FFH
Sbjct: 770  NISQIIACVGQQNVEGKRIPFGFKDRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFH 829

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AMGGREG+IDTA KTSETGY+QRRL+KAMED+MV+YD T RN  G+++QFLYGEDGM + 
Sbjct: 830  AMGGREGIIDTACKTSETGYVQRRLMKAMEDVMVQYDRTARNGNGEILQFLYGEDGMGAE 889

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYI-DDLKTIKELRDVFDAEVQK 943
            +IE Q +D + M   E ++ F  +   E++   ++L E I + + +    + +   E QK
Sbjct: 890  YIEDQQIDLMTMDDEEMNRRFNHDFRSESYGLGWILNEEIRNTILSDFSQQVILVEEYQK 949

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            L   +  +  EI  +GD +  LPVN+KR++  A   F       + ++P+++    +KL 
Sbjct: 950  LVDLKKMICEEIFPNGDHAQHLPVNIKRILEYATTQFPATTSSRNQLNPVDIALRTNKLL 1009

Query: 1004 ERLKVVPGEDP---LSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
            E + ++    P   LS EAQ+NAT+     LR    S+ +++  ++   A +WV GE+E 
Sbjct: 1010 ENMIIITTSGPTDVLSEEAQQNATILIKAHLRCNLNSRYLMEYVQIGNLALDWVYGEVER 1069

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
             F +++  PGE +G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLG+PRL+E+INV   +
Sbjct: 1070 CFFKAIANPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVTNV 1129

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            +TPSL+++L   ++  +ERAK +Q  LEYT    + E   V YDP    TI++ED E+V+
Sbjct: 1130 RTPSLTIYLDANISKDQERAKEMQTQLEYTNFERLVENYSVIYDPVVNSTIVKEDYEWVR 1189

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAV-AEKINQEFDDDLTCIFNDDN 1239
             YY   DE    E+                ++ L +    AE +N+   D L+ I     
Sbjct: 1190 DYY---DEFSNGEE----------------ERMLQLVETEAEFLNKFMTDVLSNI--KLR 1228

Query: 1240 ADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDA 1299
              K I ++ +  +   +   N  +   D    ++   +L        N+L + C   V+ 
Sbjct: 1229 GVKGITKVYMREETFTR--YNGATGSFD----RVSQWVLDTDGCNLENVLPIPC---VEY 1279

Query: 1300 RRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAI 1359
             +T SN + EI  V GIEA RRALL E+R VISFDG+YVNYRHL++LCD MT +G+LM+I
Sbjct: 1280 TKTFSNDVSEIFNVFGIEAARRALLREIRAVISFDGAYVNYRHLSLLCDIMTQKGYLMSI 1339

Query: 1360 TRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLY 1419
            TRHG+NR D GP+++CSFEET++ LL AA F+E D LRGVTEN+++GQL+P GTG   + 
Sbjct: 1340 TRHGLNRADRGPLVKCSFEETLETLLSAAAFSEVDPLRGVTENVVVGQLSPYGTGCFDIM 1399

Query: 1420 LNDEMLKNAIELQLPSYMEGLEFGM-TPARSPVS-GTPYH--DGMMSPGYLFSP---NLR 1472
            +++  L++A   Q  + M     G+ +P  +P+S  TP    + M+SP   FSP   +L 
Sbjct: 1400 IDELKLRDAN--QSSATMADSVMGLISPDSTPMSPTTPASRINSMLSP-IPFSPSYTSLM 1456

Query: 1473 LSPVTDAQFSP---------YVGGMAFSPTSSPGYSPSSPG--YSPSSPGYSPTSPGY-S 1520
            +SP + A   P         Y  G +FSPT SPG SP+SP    SP+SP YS TSP Y +
Sbjct: 1457 MSP-SVAGLGPSTPGLMVDTYALGGSFSPT-SPG-SPTSPTSPMSPTSPAYSVTSPTYGA 1513

Query: 1521 PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1580
              SP Y   SP YSPTSP YSP+SP YSPTSPAYSPTSPSYSPTSP+YSPTSP+YSPTSP
Sbjct: 1514 AASPTYLAASPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSPTSP 1573

Query: 1581 SYSPTSPSYSPTSPS--YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS--YSPTSP 1636
            +YSPTSP+YSPTSP+  YSPTSP+YSPTSPAYSPTSPAYSPTSPAYSPTSP+  YSP  P
Sbjct: 1574 AYSPTSPAYSPTSPNLGYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPNVPYSPADP 1633

Query: 1637 SYSP 1640
             +SP
Sbjct: 1634 -FSP 1636



 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 139/235 (59%), Positives = 160/235 (68%), Gaps = 32/235 (13%)

Query: 1530 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PT 1585
            SP  +P SPT +P+S   S  SP   P SPSY  TS   SP+     P++P         
Sbjct: 1424 SPDSTPMSPT-TPASRINSMLSPI--PFSPSY--TSLMMSPSVAGLGPSTPGLMVDTYAL 1478

Query: 1586 SPSYSPTSPSYSPTSPS--YSPTSPAYSPTSPAY-SPTSPAYSPTSPSYSPTSPSYSPTS 1642
              S+SPTSP  SPTSP+   SPTSPAYS TSP Y +  SP Y   SPSYSPTSP+YSPTS
Sbjct: 1479 GGSFSPTSPG-SPTSPTSPMSPTSPAYSVTSPTYGAAASPTYLAASPSYSPTSPAYSPTS 1537

Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYS 1702
            P+YSPTSP+YSPTSPSYSPTSPAYSPTSP YSPTSP+YSPTSP YSPT           S
Sbjct: 1538 PAYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPT-----------S 1586

Query: 1703 PSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPT--YSPSSPYN 1755
            P+L YSP+SP       YSPTSP YSPTS +YSPTSP+YSP+SP   YSP+ P++
Sbjct: 1587 PNLGYSPTSP------AYSPTSPAYSPTSPAYSPTSPAYSPTSPNVPYSPADPFS 1635



 Score =  204 bits (520), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 140/239 (58%), Positives = 161/239 (67%), Gaps = 31/239 (12%)

Query: 1541 SPSSPGYSPTSPAYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPS 1595
            SP S   SPT+PA    S  S  P SPSY  TS   SP+     P++P           S
Sbjct: 1424 SPDSTPMSPTTPASRINSMLSPIPFSPSY--TSLMMSPSVAGLGPSTPGLMVDTYALGGS 1481

Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSP 1654
            +SPTSP  SPTSP    TSP  SPTSPAYS TSP+Y +  SP+Y   SPSYSPTSP+YSP
Sbjct: 1482 FSPTSPG-SPTSP----TSPM-SPTSPAYSVTSPTYGAAASPTYLAASPSYSPTSPAYSP 1535

Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
            TSP+YSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP+Y+P S       AYSP+SP L
Sbjct: 1536 TSPAYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP------AYSPTSPNL 1589

Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
                 YSPTSP YSPTS +YSPTSP+YSP+SP YSP+SP      N  YSP+ P +SP+
Sbjct: 1590 G----YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP------NVPYSPADP-FSPN 1637



 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 130/237 (54%), Positives = 155/237 (65%), Gaps = 37/237 (15%)

Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA- 1616
            SP  +P SP+ +P S   S  SP   P SPSY  TS   SP+     P++P     + A 
Sbjct: 1424 SPDSTPMSPT-TPASRINSMLSPI--PFSPSY--TSLMMSPSVAGLGPSTPGLMVDTYAL 1478

Query: 1617 ---YSPTSPAYSPTSPS--YSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPAYSPTS 1670
               +SPTSP  SPTSP+   SPTSP+YS TSP+Y +  SP+Y   SPSYSPTSPAYSPTS
Sbjct: 1479 GGSFSPTSPG-SPTSPTSPMSPTSPAYSVTSPTYGAAASPTYLAASPSYSPTSPAYSPTS 1537

Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSP 1729
            P YSPTSP+YSPTSP+YSPTSP+Y+P S       AYSP+SP  SP SP YSPTSPN   
Sbjct: 1538 PAYSPTSPAYSPTSPSYSPTSPAYSPTSP------AYSPTSPAYSPTSPAYSPTSPNLG- 1590

Query: 1730 TSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPS 1786
                YSPTSP+YSP+SP YSP+SP         YSP+SP YSP+   SP+ P YSP+
Sbjct: 1591 ----YSPTSPAYSPTSPAYSPTSP--------AYSPTSPAYSPT---SPNVP-YSPA 1631



 Score =  143 bits (360), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 113/227 (49%), Positives = 135/227 (59%), Gaps = 48/227 (21%)

Query: 1572 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYS----PT 1627
            SP  +P SP+ +P S   S  SP   P SPSY  TS   SP+     P++P         
Sbjct: 1424 SPDSTPMSPT-TPASRINSMLSPI--PFSPSY--TSLMMSPSVAGLGPSTPGLMVDTYAL 1478

Query: 1628 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY-SPTSPGYSPTSPSYSPTSPT 1686
              S+SPTSP  SPTSP    TSP  SPTSP+YS TSP Y +  SP Y   SPSYSPTSP 
Sbjct: 1479 GGSFSPTSPG-SPTSP----TSP-MSPTSPAYSVTSPTYGAAASPTYLAASPSYSPTSPA 1532

Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
            YSPTSP             AYSP+SP       YSPTSP+YSPTS +YSPTSP+YSP+SP
Sbjct: 1533 YSPTSP-------------AYSPTSP------AYSPTSPSYSPTSPAYSPTSPAYSPTSP 1573

Query: 1747 TYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
             YSP+SP         YSP+SP    + GYSP++P YSP+S + Y+P
Sbjct: 1574 AYSPTSP--------AYSPTSP----NLGYSPTSPAYSPTSPA-YSP 1607


>gi|342878262|gb|EGU79617.1| hypothetical protein FOXB_09900 [Fusarium oxysporum Fo5176]
          Length = 1751

 Score = 1562 bits (4045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 851/1776 (47%), Positives = 1126/1776 (63%), Gaps = 211/1776 (11%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKP--GGLSDPRLGTIDR 62
            F +S A +  V  +QFG++SP+EI+ MSV  I + ET E  K KP  GGL+DP LG+IDR
Sbjct: 6    FTHSSAPLKTVEEIQFGLMSPEEIKNMSVCHITYPETMEENKTKPRDGGLNDPLLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + +C+TCT  M ECPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD+ D +F 
Sbjct: 66   QFRCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADDRDPEFV 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK----KNKGGCGAQQPKL 178
             A+  R+PK R  ++ + CK K +CE  DE     +D E   K    +  GGCG  QP +
Sbjct: 126  NAINTRDPKVRFNRVWEVCKKKRRCEN-DE--AKQKDDEFGTKTGPPRGHGGCGNMQPNV 182

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLNP 236
                +++ A +       D Q+      ++K+T  +T E    +L+RI+++D   +GLN 
Sbjct: 183  RQAALQLKAAFDEVTVDEDGQKS-----KKKETTPITPEMAHSILRRITEDDLVNMGLNS 237

Query: 237  KYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNG 283
             YARP+WM+L V             +      +R  DDLT++L  IIR N N+++  R G
Sbjct: 238  DYARPEWMVLTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIREG 297

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGK 343
            +P HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGK
Sbjct: 298  SPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGK 357

Query: 344  RVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKT 403
            RVDFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG  
Sbjct: 358  RVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG-- 415

Query: 404  GAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
             AKY+IR DGQR+DLR+ +++    LE G+KVERHL  GD+++FNRQPSLHK S+MGHR+
Sbjct: 416  -AKYVIRADGQRIDLRHHRRAGAISLEYGWKVERHLMTGDYIIFNRQPSLHKESMMGHRV 474

Query: 464  KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
            ++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N P+
Sbjct: 475  RVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPLNIVSPQKNGPL 534

Query: 524  MGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNL 583
            MGIVQD+L G  K+ +RD F+ K+  MN ++W  ++DG +PQP I KPRP WTGKQ+ ++
Sbjct: 535  MGIVQDSLAGAYKLCRRDVFLTKEQIMNCMLWVPNWDGVIPQPAIYKPRPRWTGKQLISM 594

Query: 584  IIPKQINLFRTAAWHAD---NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHV 640
            +IPK+++LF       +    D+G+L        I+ G+L+ G L KK +G + G ++H+
Sbjct: 595  VIPKEVSLFNGTDSGENAPLKDEGLL--------IQAGQLMYGLLTKKNIGAAAGGIVHI 646

Query: 641  IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKN 700
             + E+GP+ A  FL   Q +V YWLL N  SIGIGDTI DA T+  +   I + K  V  
Sbjct: 647  SYNELGPEGAMAFLNGVQQVVTYWLLNNGHSIGIGDTIPDAATIAKVQVHIDEEKAEVAR 706

Query: 701  LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760
            L   A    LE  PG  +  +FENKV+  LN ARD+AG++ QKSL +SNN   M ++GSK
Sbjct: 707  LTAMATANELEALPGMNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSK 766

Query: 761  GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 820
            GS INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP E
Sbjct: 767  GSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSE 826

Query: 821  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 880
            FFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD++QFLYGEDG
Sbjct: 827  FFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIVQFLYGEDG 886

Query: 881  MDSVWIESQTLDSLKMKKSEFDKAFRFEM-DEENW-NPNYMLQEYIDDLKTIKELRDVFD 938
            +D++ IE Q L  L M  S F+K +R ++ +  +W   +Y   E+ ++L   KE  +  D
Sbjct: 887  LDAMIIEKQKLGILNMSNSAFEKKYRLDLANPPDWFKHDY---EFGNELTGDKESMEYLD 943

Query: 939  AEVQKLEADRYQL-ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVE 997
             E +KL ADR Q+     A   +    LP+N+ R+I +A++ F V     S++ P EV+ 
Sbjct: 944  QEWEKLLADRRQVRQINKAKGNEEMMQLPLNITRIIESAKRVFNVKANDRSNLRPSEVIP 1003

Query: 998  AVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGE 1057
            AV  L + +K+V G D +S+EA  NA++ F  LLRS  A K V+KEHRL + AF+ ++GE
Sbjct: 1004 AVQNLLDSMKIVRGTDEISIEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 1063

Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
            +++R+ ++ V PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+A
Sbjct: 1064 LQNRWDRAFVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLA 1123

Query: 1118 KKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVE 1177
            K IKTPS++V+L   + + +E+AK ++  +EYT LRSVT  TE++YDP+   T I EDV+
Sbjct: 1124 KNIKTPSMAVYLNTPL-ARQEQAKKLRSMVEYTNLRSVTSVTEIYYDPNITETNIPEDVD 1182

Query: 1178 FVKSYYEMPDEDIAP-EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
             V+SYY +PDE + P    S WLLRI L+R+ ++DK++ +  VA++I +E+  DL  IF+
Sbjct: 1183 MVESYYMIPDESVDPTANQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPTDLAVIFS 1242

Query: 1237 DDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---------- 1286
            D+NAD+ ++RIR +     K E  +   E+DV LK++E+++L  + LRGV          
Sbjct: 1243 DNNADEQVIRIRTLQ-TGDKDEEGEGGMEEDVMLKRLEAHLLDTLTLRGVPGIERAFLTK 1301

Query: 1287 ----------NLLA---------------------VMCHEDVDARRTTSNHLIEIIEVLG 1315
                       LLA                     V+  + VDA RT +N L +I+EV G
Sbjct: 1302 GTRLTEGPDGALLAIKDDPRCTQWYLDTSGTALRDVLAVDGVDATRTYTNDLYQIVEVFG 1361

Query: 1316 IEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRC 1375
            IEA R AL  EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MRC
Sbjct: 1362 IEAARAALAKELTNVLAFDGSYVNHRHIALLVDVMTYRGSISAVTRHGINRADTGALMRC 1421

Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS 1435
            SFEETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG+  + L+ +ML+  I     +
Sbjct: 1422 SFEETVEILLEAAATGELDDCRGISENVMLGQMAPMGTGNFDVLLDPKMLETVIS---DN 1478

Query: 1436 YMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFS 1491
               GL  GM      V G  TPY  G  M   GY     L LS      FSP  G  + +
Sbjct: 1479 SRMGLMAGMPTKGGDVEGAATPYDTGSPMADSGY-----LSLSSSAAGNFSPIQGAGSET 1533

Query: 1492 P------TSSPGYSPSSPGYSPSSP---------------------GYSPTSP-----GY 1519
            P          G+  +SP Y+  +                      GYSPTSP     G 
Sbjct: 1534 PGGFTTVGGDHGFGGASP-YNRGAASPFSSTSPTSPFSYSPSSPNMGYSPTSPLIDGGGM 1592

Query: 1520 S------------------------PTSPG---------------------YSPTSPGY- 1533
            S                        PTSP                      YSPTSP   
Sbjct: 1593 SRYGPTSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPTSPSSPRHYSPTSPAQF 1652

Query: 1534 -SPTSPTYSPSSPGYSPTSP-------------------------AYSPTSPSYSPT-SP 1566
             SPTSP+YSP+SP YSPTSP                         AYSPTSPS+  +   
Sbjct: 1653 NSPTSPSYSPASPNYSPTSPNIHGAGPTSPSYSPASPSWSPTSPEAYSPTSPSFQRSPGA 1712

Query: 1567 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
              SPTSPSYSPTSP++SP +P    +   YSP SPS
Sbjct: 1713 QQSPTSPSYSPTSPAFSPRTPGPGTSGNQYSPNSPS 1748



 Score = 65.5 bits (158), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 90/239 (37%), Gaps = 105/239 (43%)

Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSP------------------------- 1608
            S  + ++SP   + S T   ++       +   SP                         
Sbjct: 1517 SSAAGNFSPIQGAGSETPGGFTTVGGDHGFGGASPYNRGAASPFSSTSPTSPFSYSPSSP 1576

Query: 1609 --AYSPTSP-----------------------------AYSPTSPA-------------- 1623
               YSPTSP                                PTSPA              
Sbjct: 1577 NMGYSPTSPLIDGGGMSRYGPTSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPT 1636

Query: 1624 -------YSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTS------------------ 1656
                   YSPTSP+   SPTSPSYSP SP+YSPTSP+                       
Sbjct: 1637 SPSSPRHYSPTSPAQFNSPTSPSYSPASPNYSPTSPNIHGAGPTSPSYSPASPSWSPTSP 1696

Query: 1657 PSYSPTSPAYSPTSPG--YSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
             +YSPTSP++   SPG   SPTSPSYSPTSP +SP +P       +YSP+   SPS+ R
Sbjct: 1697 EAYSPTSPSFQ-RSPGAQQSPTSPSYSPTSPAFSPRTPGPGTSGNQYSPN---SPSNER 1751



 Score = 57.4 bits (137), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 66/217 (30%), Positives = 92/217 (42%), Gaps = 68/217 (31%)

Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSP--GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP 1703
            S  + ++SP   + S T   ++      G+   SP     +  +S TSP+     +  SP
Sbjct: 1517 SSAAGNFSPIQGAGSETPGGFTTVGGDHGFGGASPYNRGAASPFSSTSPTSPFSYSPSSP 1576

Query: 1704 SLAYSPSSPRLSPAS--------------------------PYSPTSPN----------- 1726
            ++ YSP+SP +                              P SP SPN           
Sbjct: 1577 NMGYSPTSPLIDGGGMSRYGPTSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPT 1636

Query: 1727 -------YSPTSSSY--SPTSPSYSPSSPTYSPSSPYNAGGGNPD--------------- 1762
                   YSPTS +   SPTSPSYSP+SP YSP+SP   G G                  
Sbjct: 1637 SPSSPRHYSPTSPAQFNSPTSPSYSPASPNYSPTSPNIHGAGPTSPSYSPASPSWSPTSP 1696

Query: 1763 --YSPSSP--QYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
              YSP+SP  Q SP A  SP++P YSP+S + ++P+T
Sbjct: 1697 EAYSPTSPSFQRSPGAQQSPTSPSYSPTSPA-FSPRT 1732


>gi|422727796|gb|AFX61755.2| RNA polymerase I largest subunit, partial [Ascosphaera torchioi]
          Length = 1651

 Score = 1561 bits (4043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 856/1693 (50%), Positives = 1129/1693 (66%), Gaps = 136/1693 (8%)

Query: 85   LAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNK 144
            LAKP+FHIGF+  +  ++ +VC NC KI A+  D  +  +L+ R+PK R   I    K+ 
Sbjct: 1    LAKPVFHIGFLTKIKKLLETVCHNCGKIKANTADPNYLNSLRYRDPKRRFDAIWRLSKDV 60

Query: 145  TKCEG---GDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE- 200
            + CE     ++ D  G+ G  P+  + GGCG  QP++  EG+ ++  +K  ++  DD + 
Sbjct: 61   SVCEADPVAEDDDALGK-GANPIVLH-GGCGNTQPQIRKEGLTLVGTWKPHKRDMDDIDA 118

Query: 201  QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV---- 256
            Q PE    K+ +T E    + K IS +D +L+GL+  YARP+WMI+ VLP+PPPPV    
Sbjct: 119  QQPE----KKVITPEMAQNIFKNISADDVRLMGLSNDYARPEWMIINVLPVPPPPVRPSV 174

Query: 257  ---------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNE 307
                     R  DDLT++LA I+R N+N+ R    G+P H++ EF  LLQ+H+ATY DN+
Sbjct: 175  LVGGSGTNQRGEDDLTYKLAEIVRANQNVMRCLNEGSPEHVLREFEALLQYHVATYMDND 234

Query: 308  LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 367
            + GQP+A Q+S RP+K+I  RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP
Sbjct: 235  IAGQPKAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVP 294

Query: 368  WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 427
             SIA  LTYPE VTPYNI +L  L++ GP   PG   A+Y+IR  G+R+DLR+ K     
Sbjct: 295  ISIARTLTYPEVVTPYNINKLGTLIDNGPDVHPG---ARYVIRSTGERIDLRHHKGGGGR 351

Query: 428  H-LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 486
            + L+ G+KVERH+ DGD +LFNRQPSLHK S+M HR+++MPYSTFRLNLSVT+PYNADFD
Sbjct: 352  NFLQYGWKVERHIQDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTPYNADFD 411

Query: 487  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
            GDEMN+HVPQS E RAE+ EL +VP  IVSPQ N P+MGIVQDTL G  KI +RDTF+ K
Sbjct: 412  GDEMNLHVPQSEEARAELKELCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTK 471

Query: 547  DVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGIL 606
            +  MNI+MW  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R      D DK  L
Sbjct: 472  EQVMNIMMWVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPAGLNLLRL-----DKDKAPL 526

Query: 607  TA-----GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
                    D  + +  GEL+ G   KK++G + G +IH I+ E G + A  F    Q +V
Sbjct: 527  GDRFSPPADGGLFVHGGELMFGMFSKKSVGAAGGGIIHTIFNEYGHEVALNFFNGAQTVV 586

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FSIGIGDTI DA T+E I   +   K  V  +   A D +LEP PG  + E+
Sbjct: 587  NYWLLHNGFSIGIGDTIPDAGTIEKIEQAVRVRKEEVDTITASATDNTLEPLPGMNVRET 646

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV++ LN ARDEAG+  +KSL + NN   M  +GSKGS INISQM A VGQQ+VEGK
Sbjct: 647  FESKVSRALNNARDEAGTVTEKSLKDCNNGVQMARSGSKGSTINISQMMAIVGQQSVEGK 706

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 707  RIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 766

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQR+LVKA+E++MVKYDGTVRNSLGDVIQFLYGEDG+D   IE+Q +D +     +F
Sbjct: 767  TGYIQRKLVKALEEVMVKYDGTVRNSLGDVIQFLYGEDGLDGAHIENQRVDIITCSDEKF 826

Query: 902  DKAFRFEMDEENWN--PNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIAT 957
             + +R ++ + +++  P+ + Q  E  DD+   + L    D E ++L  DR  L + +  
Sbjct: 827  RRRYRVDLMDSDYSISPDLLQQAKEIADDVDAQRYL----DEEWEQLNEDRTFLRS-VCK 881

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
              +    LP+N++R++ +A+  F++     SD+HP EV+  V  L +RL VV G+D +S 
Sbjct: 882  EDEEMMQLPINVQRILESAKTMFRIREGTISDLHPSEVIPQVRDLLDRLVVVRGDDIISK 941

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ++AT+ F   LRS  A +R++ E+ L + AF+ V+G IE++F +++  PGEM+G +A
Sbjct: 942  EAQESATILFRCHLRSRLAFRRLVVEYSLNKLAFQHVLGAIENKFARAVANPGEMVGVLA 1001

Query: 1078 AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTK 1137
            AQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVAK IKTPS++V+  P +   K
Sbjct: 1002 AQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKNIKTPSMTVYQDPSIAGEK 1061

Query: 1138 ERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE--KI 1195
            E  K ++ A+E+T+LRSVTEATE++YDPD   T+IE D + V+SY+ +P ED+  +  + 
Sbjct: 1062 ETVKQLRSAVEHTSLRSVTEATEIYYDPDIQSTVIEADRDMVESYFIIP-EDVNDDMSRQ 1120

Query: 1196 SPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAP 1255
            S WLLRI L+R  ++DK L++  VA KI +E+  D+  IF+D+NAD+ ++RIR ++ E  
Sbjct: 1121 SKWLLRIILSRAKLLDKNLTVQDVASKIKEEYPRDVAVIFSDNNADEQVIRIRQIH-ETK 1179

Query: 1256 KGELNDESAEDDVFLKKIESNMLTEMALRGVN---------------------------- 1287
              E  D+  E DV LK++E+++L  + LRGV+                            
Sbjct: 1180 ADEDEDDDTEYDVTLKRLEAHLLDTLTLRGVSGVERAFINEKTIVRVLEDGSLRKSSADP 1239

Query: 1288 -------------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1334
                         L  V+    VDA RT SN   E++EV GIEA R ALL EL  V++FD
Sbjct: 1240 FCKEWVLETSGSALAEVLAIPGVDATRTYSNQFSEVLEVFGIEAARAALLRELTQVLAFD 1299

Query: 1335 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1394
            GSYVN+RHLA+L D MT  G +MA+TRHGINR DTG +MRCSFEETV+ILLDAA FAE D
Sbjct: 1300 GSYVNHRHLALLIDVMTSGGAVMAVTRHGINRTDTGALMRCSFEETVEILLDAAAFAELD 1359

Query: 1395 YLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPV--- 1451
              RGV+EN++LGQ+AP GTG+  ++L+ +ML   +     S   GL      A+  +   
Sbjct: 1360 DCRGVSENLILGQMAPAGTGEFEVHLDQKMLMGVV-----SSNAGLAIDSADAKGSLLAE 1414

Query: 1452 -SGTPYHDG--MMSPGYLFS--PNLRLSPVTDAQFSPYVGG---MAFSPTSSPGYSPSSP 1503
             + TPY  G  M    Y+ +  P+ + SP+  A      GG     F+  S PG+   SP
Sbjct: 1415 GAATPYDTGPPMHENVYIGAADPDSKFSPIRQA-----TGGETPQGFTDYSGPGFGGFSP 1469

Query: 1504 GYSPSSPG---------YSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1554
             +   SPG          SPTSP YSP+S GYSPTSPG + TSP  +  SP +SP SP +
Sbjct: 1470 -HGARSPGNYSPSSPFSTSPTSPVYSPSS-GYSPTSPGIAITSPR-AMGSPSFSPASPTF 1526

Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
             P SP+YSPTSP +       SPTSP+YSPTSP +SP+SP+YSPTSPS+SP SP +SPTS
Sbjct: 1527 VPASPAYSPTSPGFRA---GVSPTSPNYSPTSPGFSPSSPNYSPTSPSFSPASPIFSPTS 1583

Query: 1615 PAYSPTSPAYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPAY--SPTS 1670
            P YSPTSPA  P++  + SPT    SPTSP Y+PTSP +SPTSP +YSPTSP +  SPTS
Sbjct: 1584 PTYSPTSPALGPSTGRHLSPT----SPTSPKYTPTSPGWSPTSPETYSPTSPNFAGSPTS 1639

Query: 1671 PGYSPTSPSYSPT 1683
            PG  PTSP YSPT
Sbjct: 1640 PG-RPTSPDYSPT 1651



 Score =  161 bits (407), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/175 (56%), Positives = 120/175 (68%), Gaps = 20/175 (11%)

Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPS 1658
            YSP+S  YSPTSP  + TSP  +  SPS+SP SP++ P SP+YSPTSP +    SPTSP+
Sbjct: 1493 YSPSS-GYSPTSPGIAITSP-RAMGSPSFSPASPTFVPASPAYSPTSPGFRAGVSPTSPN 1550

Query: 1659 YSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS 1718
            YSPTSP +SP+SP YSPTSPS+SP SP +SPTSP+Y+P S    P+L   PS+ R    S
Sbjct: 1551 YSPTSPGFSPSSPNYSPTSPSFSPASPIFSPTSPTYSPTS----PALG--PSTGR--HLS 1602

Query: 1719 PYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
            P SPTSP Y+PTS  +SPTSP       TYSP+SP  AG       P+SP YSP+
Sbjct: 1603 PTSPTSPKYTPTSPGWSPTSPE------TYSPTSPNFAGSPTSPGRPTSPDYSPT 1651



 Score =  125 bits (313), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/150 (50%), Positives = 96/150 (64%), Gaps = 15/150 (10%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            YSP+S  YSPTSP  + TSP  +  SP +SP SP++ P SP YSPTSP +          
Sbjct: 1493 YSPSS-GYSPTSPGIAITSP-RAMGSPSFSPASPTFVPASPAYSPTSPGFRA-------- 1542

Query: 1705 LAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDY 1763
               SP+SP  SP SP +SP+SPNYSPTS S+SP SP +SP+SPTYSP+SP          
Sbjct: 1543 -GVSPTSPNYSPTSPGFSPSSPNYSPTSPSFSPASPIFSPTSPTYSPTSPALGPSTGRHL 1601

Query: 1764 SPSSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
            SP+SP    S  Y+P++PG+SP+S   Y+P
Sbjct: 1602 SPTSPT---SPKYTPTSPGWSPTSPETYSP 1628


>gi|71027119|ref|XP_763203.1| DNA-directed RNA polymerase II largest subunit [Theileria parva
            strain Muguga]
 gi|68350156|gb|EAN30920.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
            parva]
          Length = 1681

 Score = 1560 bits (4040), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 840/1735 (48%), Positives = 1116/1735 (64%), Gaps = 125/1735 (7%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            +D   P+SP E+ ++R ++FG+L P+ +++MSV +I   E    G P+ GGL+D R+GT 
Sbjct: 5    IDLNRPFSPCELKRIRAIEFGLLDPELVKRMSVCEITLTELYREGIPQTGGLNDLRMGTT 64

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            D +  C TC+ ++  CPGHFGH+ LAKPM+H GFM TVL I+R VCFNCSK+L +++D +
Sbjct: 65   DPRHICLTCSMDLKYCPGHFGHIVLAKPMYHYGFMMTVLKILRCVCFNCSKLLLNKNDPR 124

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
             +  LK  +   RL  + + C     C     ID       E       GCG  QP  T 
Sbjct: 125  VQLILKSPSSSFRLNHLSELCSASRTCR----IDTQTNTKIE-------GCGYPQPSYTK 173

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EG  ++ ++ +Q+++   +E   +  + K+ LT E    VL+ I+ ED + LG  P+ ++
Sbjct: 174  EGPNLMIQF-SQKQREILEESDEQCNDIKRPLTPEEAFKVLRGITLEDMKCLGFVPERSQ 232

Query: 241  PDWMILQVLPIPPPPVRP---------SDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            P W+ILQVLP+PPP VRP          DDLT +L  +++ N  ++R ++     HII E
Sbjct: 233  PCWLILQVLPVPPPAVRPYVQYGSDRSEDDLTLKLLDVLKTNNLIKRHDKRATAPHIIQE 292

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              QLLQFHI T FDN++PG P A+ RS +PIKSI +RLK KEGR+RGNLMGKRVDFSART
Sbjct: 293  MCQLLQFHITTLFDNDIPGMPIASTRSKKPIKSIRARLKGKEGRLRGNLMGKRVDFSART 352

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VIT DP I ID +GVP SIA+ LT+ ETV   N E L++ VE GPH  PG   AKYIIRD
Sbjct: 353  VITGDPNIPIDTIGVPKSIAMTLTFCETVNSLNYESLRKKVETGPHDWPG---AKYIIRD 409

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            DG R DLR++KKSS+  LE GYKVERH+ DGD++LFNRQPSLHKMSIMGHR KI+PYSTF
Sbjct: 410  DGTRFDLRHVKKSSELQLEYGYKVERHMQDGDYILFNRQPSLHKMSIMGHRAKILPYSTF 469

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            RLNLSVT+PYNADFDGDEMN+H+ Q+ ETRAEV  LM+VPK IVSPQ NRPVMGIVQD+L
Sbjct: 470  RLNLSVTTPYNADFDGDEMNLHLVQTHETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSL 529

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP----- 586
            L   K TKRDTF+ +D  M++L+W   +DGK+PQP I  P+ LWTGKQV ++++      
Sbjct: 530  LAVSKFTKRDTFLTRDELMSLLIWIPYWDGKLPQPAIFFPKNLWTGKQVISVLLTFNQSQ 589

Query: 587  --KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
                INL R      D D    +  D+ V I K E +SG +CKKT+G S+GSLIH++W E
Sbjct: 590  GITNINLIRDGTIKLDKDNLNCSINDSRVIIRKNEHISGIICKKTVGCSSGSLIHILWHE 649

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
             GP+  R FL   Q +VN W LQ  F++   D      T+  ++  + K+K  V+ L+ Q
Sbjct: 650  AGPEKCRDFLTTLQKVVNNWFLQIGFTVSCSDICCSESTLNKVSRILDKSKKEVQKLVLQ 709

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            AQ   L+ +PG+++ ESFE +VN+ LN AR+++GS    SL+ SNN+ +MV +GSKGS I
Sbjct: 710  AQKGKLKCQPGKSLFESFEARVNKELNDAREQSGSIVASSLNLSNNILSMVNSGSKGSTI 769

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ ACVGQQNVEGKRIPFGF DR+LPHF K DYGPESRGFV NSYL GLTPQE FFH
Sbjct: 770  NISQIIACVGQQNVEGKRIPFGFRDRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFH 829

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AMGGREG+IDTA KTSETGY+QRRL+KAMED+MV+YD T RN  G+++QFLYGEDGM + 
Sbjct: 830  AMGGREGIIDTACKTSETGYVQRRLIKAMEDVMVQYDRTARNGNGEILQFLYGEDGMGAE 889

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
            +IE Q +D +++   E  + F  +   E++   ++ +E  + + +    + +   E QKL
Sbjct: 890  YIEDQFIDLMRLDDEEIHRRFSHDFRSESYGLGWISEEIRNAILSDFSQQVILVEEFQKL 949

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
               +  +  EI  SGD S  LP+N+KR++  A   F       S ++P+E+ +  +KL E
Sbjct: 950  LDLKKMICEEIFPSGDYSQHLPINIKRILEYATTQFPAS--STSKLNPVEIAQRTNKLLE 1007

Query: 1005 RLKVVPGEDP---LSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
             L ++    P   LS EAQ+NAT+     LR    S+ ++++ +++  A +WV GE+E  
Sbjct: 1008 SLIIINTSGPNDILSEEAQQNATILIKAHLRCHLNSRYLMEQVQISSLALDWVYGEVERC 1067

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F +++  PGE +G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLG+PRL+E+INV   ++
Sbjct: 1068 FFKAIANPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVTNVR 1127

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPSL+++L P +N  +ERAK +Q  LEYT    +  +  V YDP    TIIEED E+V+ 
Sbjct: 1128 TPSLTIYLDPSINKDQERAKEMQTLLEYTNFEKIVLSYTVVYDPVVDRTIIEEDYEWVRD 1187

Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDD-DLTCIFNDDNA 1240
            YYE PDE++    +  ++LRI LN ++M DK+L+M  V E I  EF + ++  I+ DDN+
Sbjct: 1188 YYEFPDEEMG--TLGQFVLRIVLNSKIMTDKRLTMKEVGEIIYSEFSNGEIDAIYTDDNS 1245

Query: 1241 DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-------------- 1286
            + L++RIR+      +G+ +  S  +  FL K  +++L  + LRGV              
Sbjct: 1246 ELLVMRIRV--KYGGEGDNSGPSDTEADFLNKFMTDVLCGIKLRGVKGITKVYMREENCV 1303

Query: 1287 ----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                                  NL +V+    VD  +T SN + EI  V GIEA RRALL
Sbjct: 1304 RYNSAVGSFDRVSQWVLDTDGCNLESVLPITCVDYTKTFSNDVSEIFHVFGIEAARRALL 1363

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
             E+R VISFDG+YVNYRHL++LCD MT +G+LM+ITRHGINR D GP+++CSFEET++ L
Sbjct: 1364 REIRAVISFDGAYVNYRHLSLLCDIMTQKGYLMSITRHGINRADRGPLIKCSFEETLETL 1423

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGM 1444
            L AAVF E D+L+GVTEN+++GQL+P GTG   + +++  L++A +    +  + L    
Sbjct: 1424 LTAAVFGEVDHLKGVTENVIVGQLSPYGTGAFDIMIDEVKLRDANQTNAINVADTLGLVS 1483

Query: 1445 TPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPG 1504
              +      TP     MSP                 FSP    +  SP    G  PS+PG
Sbjct: 1484 PDSSPLSPSTPATKQTMSP---------------MAFSPTYTSLMMSPVGGIGMGPSTPG 1528

Query: 1505 YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPT 1564
                +     +    SPTSP  SPTSP  SPTSP  SP SP  S  SP YSP   +YSPT
Sbjct: 1529 LMVDTYALGGSFSPTSPTSP-MSPTSP-MSPTSPM-SPMSPT-SAMSPVYSP---AYSPT 1581

Query: 1565 SPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
            SP  SPTSP+   SPTSP YSP   +YSPTSP+      + SPTSP YSP   AYSPTSP
Sbjct: 1582 SP-MSPTSPANALSPTSPVYSP---AYSPTSPT-----SAMSPTSPVYSP---AYSPTSP 1629

Query: 1623 --AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSP 1675
               Y+PTSP Y   SP+YSPTSP+Y      YSPTSP  SPTSPAYSPT P +SP
Sbjct: 1630 NLGYAPTSPVY---SPAYSPTSPNY-----GYSPTSP-LSPTSPAYSPTDP-FSP 1674



 Score =  107 bits (266), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 98/216 (45%), Positives = 119/216 (55%), Gaps = 49/216 (22%)

Query: 1578 TSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
            T  + SP + S + TS   SP       P++P     + A   +    SPTSP  SPTSP
Sbjct: 1496 TKQTMSPMAFSPTYTSLMMSPVGGIGMGPSTPGLMVDTYALGGSFSPTSPTSP-MSPTSP 1554

Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS--YSPTSPTYSPTSPSY 1694
              SPTSP  SP SP+ S  SP YSP   AYSPTSP  SPTSP+   SPTSP YSP     
Sbjct: 1555 -MSPTSP-MSPMSPT-SAMSPVYSP---AYSPTSP-MSPTSPANALSPTSPVYSP----- 1602

Query: 1695 NPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPS--YSPSSPTYSPSS 1752
                       AYSP+SP     S  SPTSP YSP   +YSPTSP+  Y+P+SP YSP+ 
Sbjct: 1603 -----------AYSPTSP----TSAMSPTSPVYSP---AYSPTSPNLGYAPTSPVYSPA- 1643

Query: 1753 PYNAGGGNPDYSPSSPQ--YSPSAGYSPSAPGYSPS 1786
                      YSP+SP   YSP++  SP++P YSP+
Sbjct: 1644 ----------YSPTSPNYGYSPTSPLSPTSPAYSPT 1669


>gi|340517293|gb|EGR47538.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1755

 Score = 1559 bits (4037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 857/1781 (48%), Positives = 1137/1781 (63%), Gaps = 195/1781 (10%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDR 62
            F +S A +  V+ +QFG++SP+EI+ MSV  I + ET E G  KP+ GGL+DP LG+IDR
Sbjct: 6    FTHSSAPLKTVQEIQFGLMSPEEIKSMSVAHILYPETMEEGGTKPRDGGLNDPLLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TCT  M ECPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LADE D +F 
Sbjct: 66   QFKCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADESDPEFV 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD----GEEP-LKKNKGGCGAQQPK 177
             A+  R+ K R K++   CK K +CE  D  +    +    G +P + ++ GGCG  QP+
Sbjct: 126  AAINTRDAKLRFKRVWAVCKKKRRCENDDRSEKNKDEEFAPGMKPAVVESHGGCGNVQPQ 185

Query: 178  LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLN 235
            +    +++ A ++        QE  P+   RK+T  +T E    +L+RIS++D + +GLN
Sbjct: 186  VRQVALQLKAAFEVV------QEDGPK---RKETAPITPEMAHSILRRISEKDLRNMGLN 236

Query: 236  PKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WMI+ V             +      +R  DDLT++L  IIR N N+++  R 
Sbjct: 237  SDYARPEWMIITVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIRE 296

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMG
Sbjct: 297  GSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMG 356

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG 
Sbjct: 357  KRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG- 415

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              AKY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR
Sbjct: 416  --AKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHR 473

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N P
Sbjct: 474  VRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGP 533

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            +MGIVQD+L G  K+ +RDTF++K+  MN+++W  ++DG +PQP ILKPRP WTGKQ+ +
Sbjct: 534  LMGIVQDSLAGAYKLCRRDTFLDKNQVMNLMLWVPNWDGVIPQPAILKPRPRWTGKQIIS 593

Query: 583  LIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            ++IPK+I+L      HA  DK      D  + I+ GEL+ G + KK +G+++G +IH+ +
Sbjct: 594  MVIPKEISL------HAPEDKSDSPLKDAGLLIQAGELMYGLMKKKNIGSASGGVIHLCY 647

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E+GP+ A  FL   Q +V YWLLQN  SIGIGDTI D +T+E +   I   K  V  L 
Sbjct: 648  NELGPEGAMAFLNGVQQVVTYWLLQNGHSIGIGDTIPDKQTIEKVQVHIDTQKAEVARLT 707

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
              A +  LE  PG  +  +FENKV+  LN ARD+AG++ QKSL +SNN   M  +GSKGS
Sbjct: 708  AMATNNELEALPGMNVRATFENKVSMALNMARDQAGTTTQKSLKDSNNAVTMAESGSKGS 767

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
             INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFF
Sbjct: 768  SINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPTEFF 827

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D
Sbjct: 828  FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLNAQYDGTVRNSLGDIIQFLYGEDGLD 887

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEM-DEENW-NPNYMLQEYIDDLKTIKELRDVFDAE 940
            ++ IE Q L  LKM    F+K +R ++ +  +W   +Y   EY ++L   K    + D E
Sbjct: 888  AMCIEKQKLGILKMSDEAFEKKYRLDLANPPDWFRKDY---EYGNELTGDKASMALLDEE 944

Query: 941  VQKLEADRYQLATEIATS--GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
              +L ADR ++  EI  S  G+    LP+N+ R+I  A++ F V     S++ P +V+  
Sbjct: 945  WDQLLADRREV-REINRSKMGEEMMQLPLNIGRMIETAKRVFNVKANDRSNLRPSDVIPV 1003

Query: 999  VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            V  +  +LK+V GED +S EA  +AT+ F  LLRS  A K V+KEHRL + AFE V+GE+
Sbjct: 1004 VRNVINKLKIVRGEDQISKEADTSATILFKALLRSRLAFKEVVKEHRLNKLAFEHVLGEL 1063

Query: 1059 ESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK 1118
            ++R+ +S V PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK
Sbjct: 1064 QNRWDRSFVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAK 1123

Query: 1119 KIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEF 1178
             IKTPS++V+L   + + +E+AK ++  +EYT LRS+T  TE++YDPD   T I ED++ 
Sbjct: 1124 NIKTPSMAVYLDTPL-AKQEQAKKLRSLVEYTNLRSITSVTEIYYDPDVQSTTIPEDLDM 1182

Query: 1179 VKSYYEMPDEDI-APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFND 1237
            V+SY+ +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+ +DL  IF+D
Sbjct: 1183 VESYFLIPDDSQDTIDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPNDLAVIFSD 1242

Query: 1238 DNADKLILRIR-IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---------- 1286
            +NAD+ ++RIR I  DE  K E  ++  EDDV LK++E+++L  + LRGV          
Sbjct: 1243 NNADEQVIRIRTIRQDE--KDEDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVERAFLTK 1300

Query: 1287 -------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLG 1315
                                            L  V+    VD  RT +N L +IIEV G
Sbjct: 1301 GTRLVEAADGSELALKDDPRCTQWYLDTSGSALREVLAVPGVDPTRTYTNDLWQIIEVFG 1360

Query: 1316 IEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRC 1375
            IE  R AL+ EL  V++FDGSYVN+RH+A+LCD MTYRG + A+TRHGINR DTG +MRC
Sbjct: 1361 IEGTRAALVKELTAVLAFDGSYVNHRHIALLCDVMTYRGSISAVTRHGINRADTGALMRC 1420

Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS 1435
            SFEETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG+  +YL+ +ML+  I     +
Sbjct: 1421 SFEETVEILLEAAATGELDDCRGISENVMLGQMAPMGTGNFDVYLDPKMLETVIS---DN 1477

Query: 1436 YMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYLFSPNLRLSPVTDAQFSPYVGG---- 1487
               GL  GM      V G  TPY  G  M   GY     L L+      FSP  G     
Sbjct: 1478 SRMGLMPGMPVKEGDVEGAATPYDTGSPMGDSGY-----LSLNSPAAGNFSPIQGAGSET 1532

Query: 1488 ----------------MAFSPTSSPGYSPSSP------------GYSPSSP--GYSPTSP 1517
                             + SP S  G +                GYSP+SP  GYSPTSP
Sbjct: 1533 PAGFGTEYGGGGFGGIGSMSPYSMRGATSPFSTSPTSPFSSGMGGYSPTSPNAGYSPTSP 1592

Query: 1518 GYSPTSPGY-----------------------SPTSPGYSPTSPT-----------YSPS 1543
                    Y                       SP SP YSPTSP+           YSP+
Sbjct: 1593 MIDGGIGRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPASPSSPRHYSPT 1652

Query: 1544 SPGY--SPTSPAYSPTSPSYSPTSPSYSPTSPS----YSPTSPSYSPTSPSYSPTSPSYS 1597
            SP    SPTSP+YSP SP+YSP SP+      +       +      +  +YSPTSPS+S
Sbjct: 1653 SPAQFNSPTSPSYSPASPNYSPASPNLHGVGATSPSYSPASPSWSPTSPEAYSPTSPSFS 1712

Query: 1598 PTSPSYSPT---------------SPAYSPTSPAYSPTSPA 1623
             +  S                   +P    +   YSP SPA
Sbjct: 1713 KSPGSQQSPTSPSYSPTSPSFSPRTPGPGASGNQYSPNSPA 1753



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 71/177 (40%), Positives = 85/177 (48%), Gaps = 18/177 (10%)

Query: 1609 AYSPTSP--AYSPTSPAYSPTSPSYSPTSPSYSPTSPSY---------SPTSPSYSPTSP 1657
             YSPTSP   YSPTSP        Y+ +      +             SP SP+YSPTSP
Sbjct: 1577 GYSPTSPNAGYSPTSPMIDGGIGRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSP 1636

Query: 1658 SYSPTSPA----YSPTSPGY--SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS 1711
            SYSP SP+    YSPTSP    SPTSPSYSP SP YSP SP+ +   A        SPS 
Sbjct: 1637 SYSPASPSSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGVGATSPSYSPASPSW 1696

Query: 1712 PRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP 1768
               SP + YSPTSP++S +  S    +      +           G     YSP+SP
Sbjct: 1697 SPTSPEA-YSPTSPSFSKSPGSQQSPTSPSYSPTSPSFSPRTPGPGASGNQYSPNSP 1752



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 76/177 (42%), Positives = 86/177 (48%), Gaps = 52/177 (29%)

Query: 1631 YSPTSPS--YSPTSPSYSPTSPSY-----------------------SPTSPSYSPTSPA 1665
            YSPTSP+  YSPTSP        Y                       SP SP+YSPTSP+
Sbjct: 1578 YSPTSPNAGYSPTSPMIDGGIGRYATSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPS 1637

Query: 1666 -----------YSPTSPGY--SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSL------- 1705
                       YSPTSP    SPTSPSYSP SP YSP SP+ +   A             
Sbjct: 1638 YSPASPSSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGVGATSPSYSPASPSWS 1697

Query: 1706 -----AYSPSSPRL--SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYN 1755
                 AYSP+SP    SP S  SPTSP+YSPTS S+SP +P    S   YSP+SP N
Sbjct: 1698 PTSPEAYSPTSPSFSKSPGSQQSPTSPSYSPTSPSFSPRTPGPGASGNQYSPNSPAN 1754



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 68/155 (43%), Gaps = 37/155 (23%)

Query: 1659 YSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS 1718
            YSPTSP     + GYSPTSP        Y+ +        +    S    P+    SPAS
Sbjct: 1578 YSPTSP-----NAGYSPTSPMIDGGIGRYATSPSFSPSSPSFSPTSPMLRPT----SPAS 1628

Query: 1719 P-------------------YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGG 1759
            P                   YSPTSP     +   SPTSPSYSP+SP YSP+SP   G G
Sbjct: 1629 PNYSPTSPSYSPASPSSPRHYSPTSP-----AQFNSPTSPSYSPASPNYSPASPNLHGVG 1683

Query: 1760 ----NPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
                +   +  S   +    YSP++P +S S  SQ
Sbjct: 1684 ATSPSYSPASPSWSPTSPEAYSPTSPSFSKSPGSQ 1718


>gi|358390960|gb|EHK40365.1| hypothetical protein TRIATDRAFT_89498 [Trichoderma atroviride IMI
            206040]
          Length = 1756

 Score = 1559 bits (4037), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 850/1779 (47%), Positives = 1130/1779 (63%), Gaps = 176/1779 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDR 62
            F +S A +  V+ +QFG+LSP+EI+ MSV  I + ET E G  KP+ GGL+DP LG+IDR
Sbjct: 6    FTHSSAPLKTVQEIQFGLLSPEEIKSMSVAHILYPETMEEGGTKPRDGGLNDPLLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TCT  M ECPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LADE D +F 
Sbjct: 66   QFKCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADESDPEFV 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP-----LKKNKGGCGAQQPK 177
             A+  R+ K R K++   CK K +CE  D  D    +   P     L ++ GGCG  QP+
Sbjct: 126  AAINTRDAKLRFKRVWAVCKKKRRCENEDRTDKNKDEEFAPGIKPALVESHGGCGNVQPQ 185

Query: 178  LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDCQLLGLN 235
            +    +++ A ++        QE  P+   RK+T  +T E    +L+RIS+ D   +GLN
Sbjct: 186  VRQVALQLKAAFEVA------QEDGPK---RKETAPITPEMAHSILRRISERDLVNMGLN 236

Query: 236  PKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WMI+ V             +      +R  DDLT++L  IIR N N+++  R 
Sbjct: 237  SDYARPEWMIITVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIRE 296

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMG
Sbjct: 297  GSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMG 356

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE GP+  PG 
Sbjct: 357  KRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVENGPNEHPG- 415

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              AKY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSLHK S+MGHR
Sbjct: 416  --AKYVIRSDGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSLHKESMMGHR 473

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N P
Sbjct: 474  VRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPNNIVSPQKNGP 533

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            +MGIVQD+L G  KI +RDTF++K+  MN+++W  ++DG +PQP ILKPRP WTGKQ+ +
Sbjct: 534  LMGIVQDSLAGAYKICRRDTFLDKNQVMNLMLWVPNWDGIIPQPAILKPRPRWTGKQIIS 593

Query: 583  LIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            ++IPK+I+L      +A  DK      DT + I+ GEL+ G + KK++G+++G +IH+ +
Sbjct: 594  MVIPKEISL------NAPEDKADNPLNDTGLLIQAGELMYGLMKKKSIGSASGGVIHLCY 647

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
             E+GP+ A  FL   Q +  YWLLQ   SIGIGDTI D +T+E +   I   K  V  L 
Sbjct: 648  NELGPEGAMAFLNGVQQVTAYWLLQEGHSIGIGDTIPDKQTIEKVQAHIDTQKAEVARLT 707

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
             QA    LE  PG  +  +FENKV+  LN ARD+AG++ QKSL +SNN   M  +GSKGS
Sbjct: 708  AQATANELEALPGMNVRATFENKVSMALNQARDQAGTTTQKSLKDSNNAVTMAESGSKGS 767

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
             INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EFF
Sbjct: 768  SINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFF 827

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD+IQFLYGEDG+D
Sbjct: 828  FHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLNAQYDGTVRNSLGDIIQFLYGEDGLD 887

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAE 940
            ++ IE Q L  LKM    F+K +R ++    E +  +Y   EY ++L   K    + D E
Sbjct: 888  AMCIEKQKLGILKMSDEAFEKKYRLDLANPPEWFRKDY---EYGNELTGDKASMALLDEE 944

Query: 941  VQKLEADRYQLATEIATS-GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
               L ADR ++     T  G+ +  LP+N+ R+I  A++ F V     S++ P +V+  V
Sbjct: 945  WDALVADRREVRQINRTKMGEEAMQLPLNIGRMIETAKRVFNVKANDRSNLRPSDVIPVV 1004

Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
              +  +LK+V GEDP+S EA  +AT+ F  LLRS  A K V+KEHRL + AF+ V+GE++
Sbjct: 1005 RDVISKLKIVRGEDPISKEADASATILFKSLLRSRLAFKEVVKEHRLNKLAFDHVLGELQ 1064

Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
            +R+ +S V PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+AK 
Sbjct: 1065 NRWDRSFVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAKN 1124

Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
            IKTP ++V+L   + + +E+AK ++  +EYT LRS+T  TE++YDPD   T I EDV+ V
Sbjct: 1125 IKTPGMAVYLDTPL-AKQEQAKKLRSLVEYTNLRSITSVTEIYYDPDVQSTTIVEDVDMV 1183

Query: 1180 KSYYEMPDE-DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDD 1238
            +SY+ +PD+     ++ S WLLRI L+R+ ++DK++ +  VA++I +E+ +DL  IF+D+
Sbjct: 1184 ESYFLIPDDTQDTIDQQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPNDLAVIFSDN 1243

Query: 1239 NADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV------------ 1286
            NAD+ ++RIR +     K +  ++  EDDV LK++E+++L  + LRGV            
Sbjct: 1244 NADEQVIRIRTIRAGDEKNDDGEKKIEDDVMLKRLEAHLLDTLTLRGVPGVEKAFLTKGT 1303

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                          L  V+    VD  RT +N L +++EV GIE
Sbjct: 1304 RLVEAADGSELALKDDPRCTQWYLDTSGSALREVLAVPGVDPIRTYTNDLWQVVEVFGIE 1363

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
              R AL+ EL  V++FDGSYVN+RH+A+LCD MTYRG + A+TRHGINR DTG +MRCSF
Sbjct: 1364 GARAALVKELTAVLAFDGSYVNHRHIALLCDVMTYRGSISAVTRHGINRADTGALMRCSF 1423

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM 1437
            EETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG   ++L+ +ML+  I     +  
Sbjct: 1424 EETVEILLEAAATGELDDCRGISENVMLGQMAPMGTGHFDVFLDPKMLETVIS---DNSR 1480

Query: 1438 EGLEFGMTPARSPVSG--TPYHDG--MMSPGYLFSPNLRLSPVTDAQFSPYVGG------ 1487
             GL  GM      V G  TPY  G  M   GY     L L+      FSP  G       
Sbjct: 1481 MGLMPGMPVKEGDVEGAATPYDTGSPMGDSGY-----LSLNSPAAGNFSPIQGAGSETPA 1535

Query: 1488 --------------MAFSPTSSPGYSPSSP------------GYSPSSP--GYSPTSPGY 1519
                           + SP S  G +                GYSPSSP  GYSPTSP  
Sbjct: 1536 GFGTEYGGGGFGGIGSMSPYSMRGATSPFSTSPTSPFSSGMGGYSPSSPNTGYSPTSPMI 1595

Query: 1520 SPTSPGY-----------------------SPTSPGYSPTSPT-----------YSPSSP 1545
                  Y                       SP SP YSPTSP+           YSP+SP
Sbjct: 1596 DGGMGRYASSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSPSYSPASPSSPRHYSPTSP 1655

Query: 1546 GY--SPTSPAYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1599
                SPTSP+YSP SP+YSP SP+     + +      +      +  +YSPTSPS+S +
Sbjct: 1656 AQFNSPTSPSYSPASPNYSPASPNLHGPGATSPSYSPASPSWSPTSPEAYSPTSPSFSKS 1715

Query: 1600 SPSYSPTSPAYSPTSPAYSPT-SPAYSPTSPSYSPTSPS 1637
              S    +      +       +P    +   YSP SP+
Sbjct: 1716 PGSQQSPTSPSYSPTSPSFSPRTPGPGASGNQYSPNSPA 1754



 Score = 58.2 bits (139), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 72/179 (40%), Positives = 86/179 (48%), Gaps = 33/179 (18%)

Query: 1609 AYSPTSP--AYSPTSPAYSPTSPSYSPTSPSYSPTSPSY---------SPTSPSYSPTSP 1657
             YSP+SP   YSPTSP        Y+ +      +             SP SP+YSPTSP
Sbjct: 1578 GYSPSSPNTGYSPTSPMIDGGMGRYASSPSFSPSSPSFSPTSPMLRPTSPASPNYSPTSP 1637

Query: 1658 SYSPTSPA----YSPTSPGY--SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS 1711
            SYSP SP+    YSPTSP    SPTSPSYSP SP YSP SP+ +   A        SPS 
Sbjct: 1638 SYSPASPSSPRHYSPTSPAQFNSPTSPSYSPASPNYSPASPNLHGPGATSPSYSPASPSW 1697

Query: 1712 PRLSPASPYSPTSPNYSPTSSSYSPT---------------SPSYSPSSPTYSPSSPYN 1755
               SP + YSPTSP++S +  S                   +P    S   YSP+SP N
Sbjct: 1698 SPTSPEA-YSPTSPSFSKSPGSQQSPTSPSYSPTSPSFSPRTPGPGASGNQYSPNSPAN 1755


>gi|46108068|ref|XP_381092.1| hypothetical protein FG00916.1 [Gibberella zeae PH-1]
          Length = 1758

 Score = 1559 bits (4036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 845/1784 (47%), Positives = 1131/1784 (63%), Gaps = 191/1784 (10%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKP--GGLSDPRLGTIDR 62
            F +S A +  V  +QFG++SP+EI+ MSV  I + ET +  K KP  GGL+D  LG+IDR
Sbjct: 6    FTHSSAPLKTVEEIQFGLMSPEEIKNMSVCHIVYPETMDENKTKPRDGGLNDLLLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
              +C+TCT  M ECPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F 
Sbjct: 66   SFRCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADSRDPEFA 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEE--------PLKKNKGGCGAQ 174
             A+  R+PK R  ++ +ACK K +CE     D P Q  +E        PL+ + GGCG  
Sbjct: 126  AAINTRDPKVRFHRVWEACKKKKRCEN----DEPKQKDDEFAATLKTGPLEGH-GGCGNV 180

Query: 175  QPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGL 234
            QP +    +++ A ++    ++  + +  E +     +T E   G+L+RIS+ED   +GL
Sbjct: 181  QPAVRQGALQLKAAFEVTVDEDGQKTKKKETIP----ITPETAHGILRRISEEDLVNMGL 236

Query: 235  NPKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQER 281
            N  YARP+WM+L V             +      +R  DDLT++L  IIR N N+++  R
Sbjct: 237  NSDYARPEWMVLTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIR 296

Query: 282  NGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLM 341
             G+P HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLM
Sbjct: 297  EGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLM 356

Query: 342  GKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPG 401
            GKRVDFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNIE+L +LVE GP+  PG
Sbjct: 357  GKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIEKLHQLVENGPNEHPG 416

Query: 402  KTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
               A+Y++R DG R+DLR+ +++    LE G+KVERHL  GD+++FNRQPSLHK S+MGH
Sbjct: 417  ---AQYVVRPDGSRIDLRHHRRAGAISLEYGWKVERHLMTGDYIIFNRQPSLHKESMMGH 473

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
            R+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N 
Sbjct: 474  RVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPLNIVSPQKNG 533

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
            P+MGIVQD+L G  K+ +RD F+ K+  MN ++W  ++DG +PQP I KPRP WTGKQ+ 
Sbjct: 534  PLMGIVQDSLAGAYKMCRRDVFLTKEQIMNCMLWVPNWDGVIPQPAIYKPRPRWTGKQLI 593

Query: 582  NLIIPKQINLFR---TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLI 638
            +++IPK++ +F    +       D+G+L        I+ G+L+ G L KK++G S G ++
Sbjct: 594  SMVIPKEVTIFNGTDSGESAPLKDEGLL--------IQAGQLMYGLLTKKSVGASAGGIV 645

Query: 639  HVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNV 698
            H+ + E+GP+ A  FL   Q +V YWLLQN  SIGIGDTI DA T+  +   I   K  V
Sbjct: 646  HISYNELGPEGAMAFLNGVQQVVTYWLLQNGHSIGIGDTIPDAVTIAKVQAHIDDEKAEV 705

Query: 699  KNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAG 758
              L   A    LE  PG  +  +FENKV+  LN ARD+AG++ QKSL +SNN   M ++G
Sbjct: 706  ARLTAMATANELEALPGMNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSG 765

Query: 759  SKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTP 818
            SKGS INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP
Sbjct: 766  SKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTP 825

Query: 819  QEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGE 878
             EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD++QFLYGE
Sbjct: 826  SEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIVQFLYGE 885

Query: 879  DGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDV 936
            DG+D++ IE+Q L  L M  + F+K +R ++    E +  +Y   E+ ++L   +    +
Sbjct: 886  DGLDAMIIENQKLGILNMSNTAFEKKYRLDLANPPEWFKHDY---EFGNELTGDRPSMAL 942

Query: 937  FDAEVQKLEADRYQL-ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEV 995
             D E ++L  DR ++ A   A   +    LP+N+ R+I +A++ F V     S++ P +V
Sbjct: 943  LDEEWERLVHDRTRIRAINRAKGNEEMMQLPLNITRIIESAKRVFNVKANDRSNLRPSDV 1002

Query: 996  VEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVI 1055
            + AV  + + +K+V G DP+S+EA  NA++ F  LLRS  A K V+KEHRL R AF+ ++
Sbjct: 1003 IPAVQNMLDNMKIVRGTDPISLEADANASILFKGLLRSRLAFKEVVKEHRLNRLAFDHIL 1062

Query: 1056 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1115
            GE+++R+ ++ V PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N
Sbjct: 1063 GELQNRWDRAFVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILN 1122

Query: 1116 VAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEED 1175
            +AK IKTPS++V+L   + + +E+AK ++  +EYT LRSVT  TE++YDP+   T I ED
Sbjct: 1123 LAKNIKTPSMAVYLNTPL-AKQEQAKKLRSMVEYTNLRSVTSVTEIYYDPNVTETNIPED 1181

Query: 1176 VEFVKSYYEMPDEDIAP-EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCI 1234
            ++ V+SYY +PDE + P    S WLLRI L+R+ ++DK++ +  VA++I +E+  DL  I
Sbjct: 1182 LDMVESYYMIPDESVDPTANQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPTDLAVI 1241

Query: 1235 FNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-------- 1286
            F+D+NAD+ ++RIR ++      + +    EDDV LK++E+++L  + LRGV        
Sbjct: 1242 FSDNNADEQVIRIRTIHTGDKDDDGDGGRMEDDVMLKRLEAHLLDTLTLRGVPGIERAFL 1301

Query: 1287 ------------NLLA---------------------VMCHEDVDARRTTSNHLIEIIEV 1313
                         LLA                     V+  + VDA RT +N L +I+EV
Sbjct: 1302 TKGTKLSEDDDGALLAIKDDPRCTQWYLDTSGTALRDVLAVDGVDATRTYTNDLYQIVEV 1361

Query: 1314 LGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMM 1373
             GIEA R AL  EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +M
Sbjct: 1362 FGIEAARSALAKELTNVLAFDGSYVNHRHIALLVDVMTYRGVISAVTRHGINRADTGALM 1421

Query: 1374 RCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQL 1433
            RCSFEETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG+  + L+ +ML+  I    
Sbjct: 1422 RCSFEETVEILLEAAATGELDDCRGISENVMLGQMAPMGTGNFDVLLDPKMLETVIS--- 1478

Query: 1434 PSYMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYLFSPNLRLSPVTDAQFSPYVGGMA 1489
             +   GL  GM      + G  TPY  G  M   GY     L +S      FSP  G  +
Sbjct: 1479 DNSRMGLMAGMPTKSGDIEGAATPYDTGSPMADSGY-----LSMSSPAAGNFSPIQGAGS 1533

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS--------PTSPGYSPTSP--GYSPTSPT 1539
             +P                +   SP + G +         +   YSPTSP  GYSPTSP 
Sbjct: 1534 DTPAGFDTVYGGGSVGFGGTTPMSPYNRGAASPFSSTSPTSPFSYSPTSPNMGYSPTSPL 1593

Query: 1540 YSPSSPG--------------------------------------------------YSP 1549
                  G                                                  YSP
Sbjct: 1594 IDGGGMGRYGPTSPSFSPSSPSFSPTSPMLRPTSPASPSYSPTSPSYSPTSPSSPRHYSP 1653

Query: 1550 TSPAY--SPTSPSYSPTSPSYSPTSPSYSPTS-------------------PSYSPTSPS 1588
            TSPA   SPTSPSYSP SP+YSPTSP+                         +YSPTSP+
Sbjct: 1654 TSPAQFNSPTSPSYSPASPNYSPTSPNVHGAGGPTSPSYSPASPSWSPTSPEAYSPTSPT 1713

Query: 1589 Y--SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
            +  SPT+   SPTSPSYSPTSPA+SP +P    +   YSP SPS
Sbjct: 1714 FQRSPTT-QQSPTSPSYSPTSPAFSPRTPGPGTSGNQYSPNSPS 1756



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 26/96 (27%)

Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPD----------------- 1762
            YSPTSP     +   SPTSPSYSP+SP YSP+SP   G G P                  
Sbjct: 1651 YSPTSP-----AQFNSPTSPSYSPASPNYSPTSPNVHGAGGPTSPSYSPASPSWSPTSPE 1705

Query: 1763 -YSPSSP--QYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
             YSP+SP  Q SP+   SP++P YSP+S + ++P+T
Sbjct: 1706 AYSPTSPTFQRSPTTQQSPTSPSYSPTSPA-FSPRT 1740



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 53/110 (48%), Gaps = 31/110 (28%)

Query: 1707 YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP--------------------------S 1740
            YSP+SP    A   SPTSP+YSP S +YSPTSP                          +
Sbjct: 1651 YSPTSP----AQFNSPTSPSYSPASPNYSPTSPNVHGAGGPTSPSYSPASPSWSPTSPEA 1706

Query: 1741 YSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTS 1789
            YSP+SPT+  S        +P YSP+SP +SP   G   S   YSP+S S
Sbjct: 1707 YSPTSPTFQRSPTTQQSPTSPSYSPTSPAFSPRTPGPGTSGNQYSPNSPS 1756


>gi|408388091|gb|EKJ67784.1| hypothetical protein FPSE_12056 [Fusarium pseudograminearum CS3096]
          Length = 1758

 Score = 1559 bits (4036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 845/1783 (47%), Positives = 1131/1783 (63%), Gaps = 189/1783 (10%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKP--GGLSDPRLGTIDR 62
            F +S A +  V  +QFG++SP+EI+ MSV  I + ET +  K KP  GGL+D  LG+IDR
Sbjct: 6    FTHSSAPLKTVEEIQFGLMSPEEIKNMSVCHIVYPETMDENKTKPRDGGLNDLLLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
              +C+TCT  M ECPGHFGH+ELAKP++H GF+K V  I+  VC NCSK+LAD  D +F 
Sbjct: 66   SFRCKTCTQAMGECPGHFGHIELAKPVYHPGFIKKVKKILEIVCHNCSKVLADSRDPEFA 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEE---PLK----KNKGGCGAQQ 175
             A+  R+PK R  ++ +ACK K +CE     D P Q  +E    LK    +  GGCG  Q
Sbjct: 126  AAINTRDPKVRFHRVWEACKKKKRCEN----DEPKQKDDEFAATLKTGPMEGHGGCGNVQ 181

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P +    +++ A ++    ++  + +  E +     +T E   G+L+RIS+ED   +GLN
Sbjct: 182  PAVRQGALQLKAAFEVTVDEDGQKTKKKETI----PITPETAHGILRRISEEDLVNMGLN 237

Query: 236  PKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WM+L V             +      +R  DDLT++L  IIR N N+++  R 
Sbjct: 238  SDYARPEWMVLTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRANGNVKQAIRE 297

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMG
Sbjct: 298  GSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMG 357

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNIE+L +LVE GP+  PG 
Sbjct: 358  KRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIEKLHQLVENGPNEHPG- 416

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
              A+Y++R DG R+DLR+ +++    LE G+KVERHL  GD+++FNRQPSLHK S+MGHR
Sbjct: 417  --AQYVVRPDGSRIDLRHHRRAGAISLEYGWKVERHLMTGDYIIFNRQPSLHKESMMGHR 474

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N P
Sbjct: 475  VRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPLNIVSPQKNGP 534

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            +MGIVQD+L G  K+ +RD F+ K+  MN ++W  ++DG +PQP I KPRP WTGKQ+ +
Sbjct: 535  LMGIVQDSLAGAYKMCRRDVFLTKEQIMNCMLWVPNWDGVIPQPAIYKPRPRWTGKQLIS 594

Query: 583  LIIPKQINLFR---TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIH 639
            ++IPK++++F    +       D+G+L        I+ G+L+ G L KK++G S G ++H
Sbjct: 595  MVIPKEVSIFNGTDSGESAPLKDEGLL--------IQAGQLMYGLLTKKSVGASAGGIVH 646

Query: 640  VIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVK 699
            + + E+GP+ A  FL   Q +V YWLLQN  SIGIGDTI DA T+  +   I   K  V 
Sbjct: 647  ISYNELGPEGAMAFLNGVQQVVTYWLLQNGHSIGIGDTIPDAVTIAKVQAHIDDEKAEVA 706

Query: 700  NLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGS 759
             L   A    LE  PG  +  +FENKV+  LN ARD+AG++ QKSL +SNN   M ++GS
Sbjct: 707  RLTAMATANELEALPGMNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGS 766

Query: 760  KGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQ 819
            KGS INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP 
Sbjct: 767  KGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPS 826

Query: 820  EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGED 879
            EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD++QFLYGED
Sbjct: 827  EFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIVQFLYGED 886

Query: 880  GMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVF 937
            G+D++ IE+Q L  L M  + F+K +R ++    E +  +Y   E+ ++L   +    + 
Sbjct: 887  GLDAMIIENQKLGILNMSNTAFEKKYRLDLANPPEWFKHDY---EFGNELTGDRPSMALL 943

Query: 938  DAEVQKLEADRYQL-ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVV 996
            D E ++L  DR ++ A   A   +    LP+N+ R+I +A++ F V     S++ P +V+
Sbjct: 944  DEEWERLVHDRTRIRAINRAKGNEEMMQLPLNITRIIESAKRVFNVKANDRSNLRPSDVI 1003

Query: 997  EAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIG 1056
             AV  + + +K+V G DP+S+EA  NA++ F  LLRS  A K V+KEHRL R AF+ ++G
Sbjct: 1004 PAVQNMLDNMKIVRGTDPISLEADANASILFKGLLRSRLAFKEVVKEHRLNRLAFDHILG 1063

Query: 1057 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1116
            E+++R+ ++ V PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+
Sbjct: 1064 ELQNRWDRAFVNPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNL 1123

Query: 1117 AKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDV 1176
            AK IKTPS++V+L   + + +E+AK ++  +EYT LRSVT  TE++YDP+   T I ED+
Sbjct: 1124 AKNIKTPSMAVYLNTPL-AKQEQAKKLRSMVEYTNLRSVTSVTEIYYDPNVTETNIPEDL 1182

Query: 1177 EFVKSYYEMPDEDIAP-EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIF 1235
            + V+SYY +PDE + P    S WLLRI L+R+ ++DK++ +  VA++I +E+  DL  IF
Sbjct: 1183 DMVESYYMIPDESVDPTANQSRWLLRITLDRQKLLDKEIKIDDVAQRIKEEYPTDLAVIF 1242

Query: 1236 NDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--------- 1286
            +D+NAD+ ++RIR ++      + +    EDDV LK++E+++L  + LRGV         
Sbjct: 1243 SDNNADEQVIRIRTIHTGDKDDDGDGGRMEDDVMLKRLEAHLLDTLTLRGVPGIERAFLT 1302

Query: 1287 -----------NLLA---------------------VMCHEDVDARRTTSNHLIEIIEVL 1314
                        LLA                     V+  + VDA RT +N L +I+EV 
Sbjct: 1303 KGTKLTEDEDGALLAIKDDPRCTQWYLDTSGTALRDVLAVDGVDATRTYTNDLYQIVEVF 1362

Query: 1315 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
            GIEA R AL  EL  V++FDGSYVN+RH+A+L D MTYRG + A+TRHGINR DTG +MR
Sbjct: 1363 GIEAARSALAKELTNVLAFDGSYVNHRHIALLVDVMTYRGVISAVTRHGINRADTGALMR 1422

Query: 1375 CSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLP 1434
            CSFEETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG+  + L+ +ML+  I     
Sbjct: 1423 CSFEETVEILLEAAATGELDDCRGISENVMLGQMAPMGTGNFDVLLDPKMLETVIS---D 1479

Query: 1435 SYMEGLEFGMTPARSPVSG--TPYHDG--MMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
            +   GL  GM      + G  TPY  G  M   GY     L +S      FSP  G  + 
Sbjct: 1480 NSRMGLMAGMPTKSGDIEGAATPYDTGSPMADSGY-----LSMSSPAAGNFSPIQGAGSD 1534

Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYS--------PTSPGYSPTSP--GYSPTSPTY 1540
            +P                +   SP + G +         +   YSPTSP  GYSPTSP  
Sbjct: 1535 TPAGFDTVYGGGSVGFGGTAPMSPYNRGAASPFSSTSPTSPFSYSPTSPNMGYSPTSPLI 1594

Query: 1541 SPSSPG--------------------------------------------------YSPT 1550
                 G                                                  YSPT
Sbjct: 1595 DGGGMGRYGPTSPSFSPSSPSFSPTSPMLRPTSPASPSYSPTSPSYSPTSPSSPRHYSPT 1654

Query: 1551 SPAY--SPTSPSYSPTSPSYSPTSPSYSPTS-------------------PSYSPTSPSY 1589
            SPA   SPTSPSYSP SP+YSPTSP+                         +YSPTSP++
Sbjct: 1655 SPAQFNSPTSPSYSPASPNYSPTSPNVHGAGGPTSPSYSPASPSWSPTSPEAYSPTSPTF 1714

Query: 1590 --SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
              SPT+   SPTSPSYSPTSPA+SP +P    +   YSP SPS
Sbjct: 1715 QRSPTT-QQSPTSPSYSPTSPAFSPRTPGPGTSGNQYSPNSPS 1756



 Score = 58.9 bits (141), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/96 (43%), Positives = 54/96 (56%), Gaps = 26/96 (27%)

Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPD----------------- 1762
            YSPTSP     +   SPTSPSYSP+SP YSP+SP   G G P                  
Sbjct: 1651 YSPTSP-----AQFNSPTSPSYSPASPNYSPTSPNVHGAGGPTSPSYSPASPSWSPTSPE 1705

Query: 1763 -YSPSSP--QYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
             YSP+SP  Q SP+   SP++P YSP+S + ++P+T
Sbjct: 1706 AYSPTSPTFQRSPTTQQSPTSPSYSPTSPA-FSPRT 1740



 Score = 55.5 bits (132), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/110 (39%), Positives = 53/110 (48%), Gaps = 31/110 (28%)

Query: 1707 YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP--------------------------S 1740
            YSP+SP    A   SPTSP+YSP S +YSPTSP                          +
Sbjct: 1651 YSPTSP----AQFNSPTSPSYSPASPNYSPTSPNVHGAGGPTSPSYSPASPSWSPTSPEA 1706

Query: 1741 YSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTS 1789
            YSP+SPT+  S        +P YSP+SP +SP   G   S   YSP+S S
Sbjct: 1707 YSPTSPTFQRSPTTQQSPTSPSYSPTSPAFSPRTPGPGTSGNQYSPNSPS 1756


>gi|302503240|ref|XP_003013580.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
 gi|291177145|gb|EFE32940.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
          Length = 1635

 Score = 1558 bits (4035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 859/1658 (51%), Positives = 1114/1658 (67%), Gaps = 143/1658 (8%)

Query: 116  EDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGG--DEIDVPGQDGEEPLKKNKGGCGA 173
            + D K+  AL+ R+PK R   I    K+   CE    +E D   ++  +P++ + GGCG 
Sbjct: 10   QSDQKYLDALRFRDPKKRFDAIWRLSKDILICEADPPEEDDPFAKESSKPVQGH-GGCGN 68

Query: 174  QQPKLTIEGMKMIAEYKAQRKKN--DDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQ 230
             QP++  EG+ ++  +K  + ++  DD E Q PE    K+ +T +  L + + IS+ED +
Sbjct: 69   VQPQVRKEGITLMGTWKPSKMRDMMDDNEIQQPE----KKQITPQMALTIFRNISEEDVR 124

Query: 231  LLGLNPKYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLR 277
            L+GL+  YARP+WMI+ VLP+PPPPV             R  DDLT++LA IIR N+N+ 
Sbjct: 125  LMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGTGQRGEDDLTYKLAEIIRANQNVT 184

Query: 278  RQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIR 337
            R E+ G+P H++ EF  LLQ+H+ATY DN++ G P+A Q+S RP+K+I  RLK KEGR+R
Sbjct: 185  RCEQEGSPEHVVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLR 244

Query: 338  GNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPH 397
             NLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPE VTPYNI RL +LV+ GP 
Sbjct: 245  QNLMGKRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNGPD 304

Query: 398  PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVERHLNDGDFVLFNRQPSLHKM 456
              PG   A+Y+IR  G+R+DLR+ K     + L+ G+KVERHL DGDF+LFNRQPSLHK 
Sbjct: 305  VHPG---ARYVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSLHKE 361

Query: 457  SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 516
            S+M HR+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L +VP  IVS
Sbjct: 362  SMMSHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVS 421

Query: 517  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWT 576
            PQ N P+MGIVQDTL G  KI +RD F+ K+  MN+L+W  D+DG +PQP ILKPRP W+
Sbjct: 422  PQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNVLLWVPDWDGVLPQPAILKPRPRWS 481

Query: 577  GKQVFNLIIPKQINLFRTAAWHADNDKGILTA-----GDTLVRIEKGELLSGTLCKKTLG 631
            GKQ+ ++++P  +NL R      D DK  ++       D  V +  GEL+ G   KKT+G
Sbjct: 482  GKQMISMVLPSGLNLLRI-----DKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVG 536

Query: 632  TSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTI 691
             S G ++H I+ E GPDAA  F    Q +VNYWLL N FSIGIGDTI D +T++ I + +
Sbjct: 537  ASGGGVVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGDTIPDLETIQKIENAV 596

Query: 692  SKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNL 751
               K  V ++   A + +LE  PG  + E+FE+KV++ LN ARDEAG++ +KSL +SNN 
Sbjct: 597  RVRKEEVDSITASATENTLEALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNA 656

Query: 752  KAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENS 811
              M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENS
Sbjct: 657  VQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENS 716

Query: 812  YLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 871
            YLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD+
Sbjct: 717  YLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDI 776

Query: 872  IQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEEN-WNPNYMLQ--EYIDDL 927
            +QFLYGEDG+D   IE+Q +D +K    +F   FR + MD E   +P+ + Q  E   D+
Sbjct: 777  VQFLYGEDGLDGQCIENQRVDVIKCSDEQFRNRFRVDLMDPERLLSPDILEQATEIAGDI 836

Query: 928  KTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP 987
            +  K L    D E ++L  DR  L T +    D    LP+N++R++ +A+ TF++     
Sbjct: 837  EVQKHL----DEEWEQLLKDRAFLRT-VVKEDDEMMQLPINIQRILESAKTTFRIRDGTI 891

Query: 988  SDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLT 1047
            SD+HP EVV  V +L +RL VV G+D LS EAQ++ATL F   LRS  A +R++ E+ L 
Sbjct: 892  SDLHPAEVVPQVRQLLDRLLVVRGDDALSREAQESATLLFKAQLRSRLAFRRLVVEYSLN 951

Query: 1048 REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGV 1107
            + AF+ V+G IESRF ++   PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGV
Sbjct: 952  KLAFQHVLGAIESRFGKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGV 1011

Query: 1108 PRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDP 1167
            PRL+EI+NVA  IKTPS++V+  P     KE AK ++  +E+T+LRSVTE+TE++YDP+ 
Sbjct: 1012 PRLKEILNVATNIKTPSMTVYQAPECRMNKESAKQLRSIVEHTSLRSVTESTEIYYDPNI 1071

Query: 1168 MGTIIEEDVEFVKSYYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQ 1225
              T+IE D++ V+SY+ +P ED+A +  + S WLLRI L+R  ++DK L++  VA KI +
Sbjct: 1072 QSTVIENDIDMVESYFIIP-EDVADDSSRQSKWLLRIILSRPKLLDKGLTVQDVATKIKE 1130

Query: 1226 EFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG 1285
             +  D+  IF+D+NAD+ ++RIR + D  PK + +D+  E DV LKK+ES++L  + LRG
Sbjct: 1131 AYPQDIAVIFSDNNADEQVVRIRQIQD--PKQDEDDDDTEYDVTLKKLESHLLDTLTLRG 1188

Query: 1286 V-----------------------------------------NLLAVMCHEDVDARRTTS 1304
            V                                          L  V+    +DA RT S
Sbjct: 1189 VPGIDRAFINEKSRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDASRTYS 1248

Query: 1305 NHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGI 1364
            N  +EI+EV GIEA R ALL EL  V++FDGSYVN+RHLA+L D MT RG LMA+TRHGI
Sbjct: 1249 NQFVEILEVFGIEATRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGI 1308

Query: 1365 NRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEM 1424
            NR DTG +MRCSFEETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+  +YL+  M
Sbjct: 1309 NRADTGALMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQSM 1368

Query: 1425 LKNAIELQLPSYMEGLE-FGMT---PARSPVSGTPYHDGMMSPGYLFS--PNLRLSPVTD 1478
            L   +         G E  GM     A    SG+P  + M    Y+ S  P+ + SPV  
Sbjct: 1369 LMGVVSNNAGLGAMGEEPKGMLSDGAATQYDSGSPMQENM----YISSPDPDSQFSPVRQ 1424

Query: 1479 AQFSPYVGGMAFSPTSSPGYSPSSP-----GYSPSSP-GYSPTSPGYSPTSPGYSPTSPG 1532
            A     VG   + P S  G+SP  P     GYSPSSP   SPTSP YSP+S GYSPTSPG
Sbjct: 1425 AGSENAVGFADYQPPSYGGFSPHEPRSPGGGYSPSSPFNTSPTSPAYSPSS-GYSPTSPG 1483

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY----SPTSPSYSPTSPS------- 1581
             S TSP +  SSP +SP SP+++PTSP+YSPTSP Y    SPTSPSYSPTSP        
Sbjct: 1484 MSITSPRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSPTSPS 1542

Query: 1582 --------------YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1627
                          +SPTSPSYSPTSP+   T    SPT    SPTSP Y+PTSP +SPT
Sbjct: 1543 YSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRHLSPT----SPTSPKYTPTSPGWSPT 1598

Query: 1628 SP-SYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPT 1662
            SP +YSPTSP++  SPTSP   PTSP YSPTSP+++PT
Sbjct: 1599 SPEAYSPTSPNFSGSPTSPG-GPTSPGYSPTSPTFNPT 1635



 Score =  160 bits (405), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 115/237 (48%), Positives = 141/237 (59%), Gaps = 52/237 (21%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSP-SYSPTSPSY 1603
            +SP   A S  +  ++   P      PSY   SP + P SP   YSP+SP + SPTSP+Y
Sbjct: 1419 FSPVRQAGSENAVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1471

Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSY 1659
            SP+S  YSPTSP  S TSP +  +SP++SP SPS++PTSP+YSPTSP Y    SPTSPSY
Sbjct: 1472 SPSS-GYSPTSPGMSITSPRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1529

Query: 1660 SPTSPA---------------------YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
            SPTSP                      +SPTSP YSPTSP+   T    SPTSP+     
Sbjct: 1530 SPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRHLSPTSPT----- 1584

Query: 1699 AKYSPSLAYSPSSPRLSPASP--YSPTSPNY--SPTSSSYSPTSPSYSPSSPTYSPS 1751
                 S  Y+P+SP  SP SP  YSPTSPN+  SPTS    PTSP YSP+SPT++P+
Sbjct: 1585 -----SPKYTPTSPGWSPTSPEAYSPTSPNFSGSPTSPG-GPTSPGYSPTSPTFNPT 1635



 Score =  155 bits (391), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/235 (47%), Positives = 139/235 (59%), Gaps = 47/235 (20%)

Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA--YSPTSP-AYSPTSPAY 1624
            +SP   + S  +  ++   P      PSY   SP + P SP   YSP+SP   SPTSPAY
Sbjct: 1419 FSPVRQAGSENAVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1471

Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY----SPTSPSY 1680
            SP+S  YSPTSP  S TSP +  +SP++SP SPS++PTSPAYSPTSPGY    SPTSPSY
Sbjct: 1472 SPSS-GYSPTSPGMSITSPRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1529

Query: 1681 SPTSP---------------------TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
            SPTSP                      +SPTSPSY+P S    P+L  +         SP
Sbjct: 1530 SPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTS----PALGGTGRH-----LSP 1580

Query: 1720 YSPTSPNYSPTSSSYSPTSP-SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
             SPTSP Y+PTS  +SPTSP +YSP+SP +S S     G  +P YSP+SP ++P+
Sbjct: 1581 TSPTSPKYTPTSPGWSPTSPEAYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFNPT 1635



 Score =  141 bits (355), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 107/232 (46%), Positives = 142/232 (61%), Gaps = 40/232 (17%)

Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA--YSPTSP-AYSPTSPSY 1631
            +SP   + S  +  ++   P      PSY   SP + P SP   YSP+SP   SPTSP+Y
Sbjct: 1419 FSPVRQAGSENAVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1471

Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY----SPTSPTY 1687
            SP+S  YSPTSP  S TSP +  +SP++SP SP+++PTSP YSPTSP Y    SPTSP+Y
Sbjct: 1472 SPSS-GYSPTSPGMSITSPRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1529

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS----------SSYSPT 1737
            SPTSP ++P S  YSP+      +  +     +SPTSP+YSPTS          S  SPT
Sbjct: 1530 SPTSPGFSPTSPSYSPTSPSFSPASPV-----FSPTSPSYSPTSPALGGTGRHLSPTSPT 1584

Query: 1738 SPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY--SPSAGYSPSAPGYSPSS 1787
            SP Y+P+SP +SP+SP         YSP+SP +  SP++   P++PGYSP+S
Sbjct: 1585 SPKYTPTSPGWSPTSP-------EAYSPTSPNFSGSPTSPGGPTSPGYSPTS 1629



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 101/208 (48%), Gaps = 66/208 (31%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG--YSPTSP-SYSPTSPTY 1687
            +SP   + S  +  ++   P      PSY   SP + P SPG  YSP+SP + SPTSP Y
Sbjct: 1419 FSPVRQAGSENAVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1471

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY------ 1741
            SP+S               YSP+SP +S  SP   +SP +SP S S++PTSP+Y      
Sbjct: 1472 SPSS--------------GYSPTSPGMSITSPRFISSPAFSPASPSFAPTSPAYSPTSPG 1517

Query: 1742 -----SPSSPTYSPSSPYNAGGGNPD-------------YSPSSPQYSPSA--------- 1774
                 SP+SP+YSP+SP  +                   +SP+SP YSP++         
Sbjct: 1518 YGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRH 1577

Query: 1775 ---------GYSPSAPGYSPSSTSQYTP 1793
                      Y+P++PG+SP+S   Y+P
Sbjct: 1578 LSPTSPTSPKYTPTSPGWSPTSPEAYSP 1605


>gi|443918878|gb|ELU39223.1| DNA-directed RNA polymerase II largest subunit [Rhizoctonia solani
            AG-1 IA]
          Length = 1531

 Score = 1553 bits (4022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 844/1563 (53%), Positives = 1063/1563 (68%), Gaps = 119/1563 (7%)

Query: 116  EDDHKFKQALK-IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQ 174
            ++D +F + ++ +R+PK R+  +   CK K  CE  +  D  G    +P K   GGCG  
Sbjct: 2    QNDTQFAEKIRHVRDPKKRMALVWAHCKGKMICEADETKDDEGA-AAQPAKVGHGGCGHV 60

Query: 175  QPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGL 234
            QP +  EG+K+   YK  R   D +   PE    K+   A  V   LK+I D D  LLGL
Sbjct: 61   QPLIRKEGLKLFLVYKKGR---DGRTSQPE----KRLYPASDVYNTLKKIPDSDLALLGL 113

Query: 235  NPKYARPDWMILQV-----------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNG 283
            + ++ARPDWMIL V           +      VR  DDLT++L  I++ + N+RR E  G
Sbjct: 114  SEEFARPDWMILTVLPVPPPPVRPSISADGGTVRSEDDLTYKLGDILKASINVRRCEEEG 173

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGK 343
            +PAH+ISEF QLLQFH+ATY DN++ G P+A Q+SGRP+K+I +RLK KEGR+RGNLMGK
Sbjct: 174  SPAHVISEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGK 233

Query: 344  RVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKT 403
            RVDFSARTVIT DP + +D++GVP S+A+NLTYPE VTPYNIE L+ LV  GP   PG  
Sbjct: 234  RVDFSARTVITGDPNLMLDEVGVPRSMAMNLTYPERVTPYNIEWLQMLVRNGPREYPG-- 291

Query: 404  GAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
             A+Y++RD G+R+DLRY  K +D  L+ G+ VERHL +GD+VLFNRQPSLHKMS+M HR+
Sbjct: 292  -ARYVVRDSGERIDLRY-NKRADTSLQYGWIVERHLKNGDYVLFNRQPSLHKMSMMSHRV 349

Query: 464  KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
            KIMPYSTFRLNLSVT PYNADFDGDEMNMH+PQS ETRAE+ ++  VP+ I+SPQ+N+PV
Sbjct: 350  KIMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEETRAELSQIAWVPRQIISPQANKPV 409

Query: 524  MGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNL 583
            MGIVQDTL G RKIT RD F++ +   NIL+W  ++DG+VP PTILKP+PLWTGKQ+ +L
Sbjct: 410  MGIVQDTLCGIRKITLRDNFLDWNFVQNILLWVPEWDGQVPVPTILKPKPLWTGKQILSL 469

Query: 584  IIPKQINLFRTAAWHADNDKGILT-----AGDTLVRIEKGELLSGTLCKKTLGTSTGSLI 638
             IP  IN+FR      D DK         A D  + IE GE+L G + KKT+G S   LI
Sbjct: 470  CIPSGINVFRAP----DKDKRTNRVPANPANDDGICIENGEILYGVVEKKTVGASQAGLI 525

Query: 639  HVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNV 698
            H+ + E GP+  R      Q +VN+WLL N FSIGIGDTIAD  TM  I   I  AKNNV
Sbjct: 526  HITFREKGPEITRDLFTSLQKVVNFWLLHNGFSIGIGDTIADKDTMSKITIHIETAKNNV 585

Query: 699  KNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAG 758
              LI++AQ   L  EPG T+ ESFE+ VN+ LN ARD+ G  AQ SL   NN+K MV AG
Sbjct: 586  LQLIQKAQYDGLRAEPGMTIRESFESHVNRELNMARDKTGKDAQDSLKNDNNVKQMVVAG 645

Query: 759  SKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTP 818
            SKGSFINISQM+ CVGQQ+VEGKRIPFGF  RTLPHF KDDY  ESRGFVENSYLRGLTP
Sbjct: 646  SKGSFINISQMSGCVGQQSVEGKRIPFGFKHRTLPHFNKDDYCAESRGFVENSYLRGLTP 705

Query: 819  QEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGE 878
            QEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKAMEDI V YDGTVRNSLGD++QF YGE
Sbjct: 706  QEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDIAVCYDGTVRNSLGDIVQFAYGE 765

Query: 879  DGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDV 936
            DGMD  +IE Q+++  ++    F++ +R ++ E    ++P   LQ  +D   +  EL+  
Sbjct: 766  DGMDGAFIERQSVEPYRLSNRAFERKYRVDVLEAGSGFSPG-TLQVGLD--ASSPELQYK 822

Query: 937  FDAEVQKLEADRYQLATEIATSGDSSWP--LPVNLKRLIWNAQKTFKVDPRRPSDMHPME 994
             D E  +L  DR  L   I  + D + P  LPVNL+R+I NAQ+ F +D R+PSD+ P  
Sbjct: 823  LDNEYAQLVKDRKMLREFIFKTADPNQPHYLPVNLRRVIQNAQQIFHIDRRKPSDLEPAY 882

Query: 995  VVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWV 1054
            +++ V  L  RL VV GEDP+S+EAQ NAT+ FN+ LRSTFA++ VL+E RLT++AF+W+
Sbjct: 883  IMDEVAGLSSRLIVVRGEDPISLEAQDNATMLFNMHLRSTFATRPVLEELRLTKQAFDWI 942

Query: 1055 IGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII 1114
            IGE+E++F  S+V PGEM G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EII
Sbjct: 943  IGEVETKFNASIVNPGEMCGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEII 1002

Query: 1115 NVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEE 1174
            NVA  IKTPSL+V+L+    S+K +AK +Q  L +TTLR++T  TE+ YDPDP  TII+E
Sbjct: 1003 NVATNIKTPSLTVYLQSEYASSKHKAKTIQTELAHTTLRTITATTEIVYDPDPTNTIIDE 1062

Query: 1175 DVEFVKSYYEMPDEDI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLT 1232
            D +FV++++ +PDE +     + SPW+LRI+L+R  ++DKKL MA +A++I Q F  D+ 
Sbjct: 1063 DRDFVETFFAIPDESVERTLSQQSPWVLRIQLDRAKVLDKKLDMAYIADRIEQAFYPDMK 1122

Query: 1233 CIFNDDNADKLILRIR--IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---- 1286
             I +DDNA+KLILR R  +M D   K E   E+ E+D+F+++IE NML  + LRGV    
Sbjct: 1123 VIPSDDNAEKLILRCRPIVMQD---KDEEAFENTEEDIFIRQIEHNMLDSVTLRGVKGIR 1179

Query: 1287 ---------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEV 1313
                                             NL +V+  + +D  RT SN   E+ EV
Sbjct: 1180 RVFMVEHDKPMIDAAGELQPRSAKEWVLETDGVNLKSVLSVDGIDFTRTYSNKCPEVFEV 1239

Query: 1314 LGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMM 1373
            LGIEA R A+L ELR VI FDGSYVNYRHLA+L D MT RG LMAITRHGINR DTG +M
Sbjct: 1240 LGIEAARAAILRELRNVIEFDGSYVNYRHLALLTDLMTNRGTLMAITRHGINRADTGALM 1299

Query: 1374 RCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI---E 1430
            RCSFEETV+IL++AA   E D   GV EN++ GQ+AP+GTG   + L+ +MLK+ I    
Sbjct: 1300 RCSFEETVEILMEAAAVGEKDDCYGVAENVLFGQMAPMGTGSFDVALDVDMLKDVIVDSR 1359

Query: 1431 LQLPSYMEG-LEFGMTPARSPVSGTPYH-------DGMMSPGYLFSPNLRLSPVTDAQFS 1482
            L + + M   +  G TPA   ++ TPY        +   + G  FSP       T+A  +
Sbjct: 1360 LPIQNMMAAQMGGGATPA-GGLAMTPYDSASPMQAEAWRTEGAAFSP-----LATNADEA 1413

Query: 1483 PYVGGMAFSPTSSPGYSPSSP-----GYSPSSPGYSPTSPGYSPTSPGYSPTSP-GYSPT 1536
               GG +F P    G SP  P     GYSPSSPGYSPTSP + PTSP  + TSP G SP 
Sbjct: 1414 S--GGFSFIPF---GQSPMGPDSRFGGYSPSSPGYSPTSP-FMPTSPMVAATSPYGASP- 1466

Query: 1537 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1596
               +  +SP    TSPAYSPTSP+ + TSP YSPTSP YSPTSP+YSPTSP+YSPTSP Y
Sbjct: 1467 ---FGATSP--YATSPAYSPTSPNMNLTSPQYSPTSPQYSPTSPTYSPTSPTYSPTSPRY 1521

Query: 1597 SPT 1599
              T
Sbjct: 1522 YST 1524



 Score =  111 bits (278), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/141 (49%), Positives = 84/141 (59%), Gaps = 12/141 (8%)

Query: 1547 YSPTSP----AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-----SYSPTSPSYS 1597
            Y   SP    A+     ++SP + +    S  +S      SP  P      YSP+SP YS
Sbjct: 1385 YDSASPMQAEAWRTEGAAFSPLATNADEASGGFSFIPFGQSPMGPDSRFGGYSPSSPGYS 1444

Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1655
            PTSP + PTSP  + TSP  +    A SP  TSP+YSPTSP+ + TSP YSPTSP YSPT
Sbjct: 1445 PTSP-FMPTSPMVAATSPYGASPFGATSPYATSPAYSPTSPNMNLTSPQYSPTSPQYSPT 1503

Query: 1656 SPSYSPTSPAYSPTSPGYSPT 1676
            SP+YSPTSP YSPTSP Y  T
Sbjct: 1504 SPTYSPTSPTYSPTSPRYYST 1524



 Score =  110 bits (275), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 84/140 (60%), Gaps = 16/140 (11%)

Query: 1568 YSPTSP----SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-----AYSPTSPAYS 1618
            Y   SP    ++     ++SP + +    S  +S      SP  P      YSP+SP YS
Sbjct: 1385 YDSASPMQAEAWRTEGAAFSPLATNADEASGGFSFIPFGQSPMGPDSRFGGYSPSSPGYS 1444

Query: 1619 PTSPAYSPTSPSYSPTSPS----YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 1674
            PTSP + PTSP  + TSP     +  TSP    TSP+YSPTSP+ + TSP YSPTSP YS
Sbjct: 1445 PTSP-FMPTSPMVAATSPYGASPFGATSPY--ATSPAYSPTSPNMNLTSPQYSPTSPQYS 1501

Query: 1675 PTSPSYSPTSPTYSPTSPSY 1694
            PTSP+YSPTSPTYSPTSP Y
Sbjct: 1502 PTSPTYSPTSPTYSPTSPRY 1521



 Score =  105 bits (263), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/146 (45%), Positives = 84/146 (57%), Gaps = 16/146 (10%)

Query: 1575 YSPTSP----SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP-----AYSPTSPAYS 1625
            Y   SP    ++     ++SP + +    S  +S      SP  P      YSP+SP YS
Sbjct: 1385 YDSASPMQAEAWRTEGAAFSPLATNADEASGGFSFIPFGQSPMGPDSRFGGYSPSSPGYS 1444

Query: 1626 PTSPSYSPTSPSYSPTSPS----YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
            PTSP + PTSP  + TSP     +  TSP    TSP+YSPTSP  + TSP YSPTSP YS
Sbjct: 1445 PTSP-FMPTSPMVAATSPYGASPFGATSPY--ATSPAYSPTSPNMNLTSPQYSPTSPQYS 1501

Query: 1682 PTSPTYSPTSPSYNPQSAKYSPSLAY 1707
            PTSPTYSPTSP+Y+P S +Y  +  Y
Sbjct: 1502 PTSPTYSPTSPTYSPTSPRYYSTCEY 1527



 Score =  101 bits (252), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/152 (44%), Positives = 88/152 (57%), Gaps = 10/152 (6%)

Query: 1616 AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-----AYSPTS 1670
            A +P   A    + ++     ++SP + +    S  +S      SP  P      YSP+S
Sbjct: 1381 AMTPYDSASPMQAEAWRTEGAAFSPLATNADEASGGFSFIPFGQSPMGPDSRFGGYSPSS 1440

Query: 1671 PGYSPTSPSYSPTSPTYSPTSP-SYNPQSAK--YSPSLAYSPSSPRLSPASP-YSPTSPN 1726
            PGYSPTSP + PTSP  + TSP   +P  A   Y+ S AYSP+SP ++  SP YSPTSP 
Sbjct: 1441 PGYSPTSP-FMPTSPMVAATSPYGASPFGATSPYATSPAYSPTSPNMNLTSPQYSPTSPQ 1499

Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGG 1758
            YSPTS +YSPTSP+YSP+SP Y  +  Y A G
Sbjct: 1500 YSPTSPTYSPTSPTYSPTSPRYYSTCEYLARG 1531


>gi|85000327|ref|XP_954882.1| DNA-directed RNA polymerase II largest subunit [Theileria annulata
            strain Ankara]
 gi|65303028|emb|CAI75406.1| DNA-directed RNA polymerase II largest subunit, putative [Theileria
            annulata]
          Length = 1678

 Score = 1550 bits (4014), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 837/1735 (48%), Positives = 1111/1735 (64%), Gaps = 128/1735 (7%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            +D   PYSP E+ ++R ++FG+L P+ +++MSV +I   E    G P+ GGL+D R+GT 
Sbjct: 5    IDLNRPYSPCELKRIRAIEFGLLDPELVKRMSVCEITLTELYREGIPQTGGLNDLRMGTT 64

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            D +  C TC+ ++  CPGHFGH+ LAKPM+H GFM TVL I+R VCFNCSK L +++D +
Sbjct: 65   DPRHICLTCSMDLKYCPGHFGHIVLAKPMYHYGFMMTVLKILRCVCFNCSKFLLNKEDPR 124

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
             +  LK  +   RL  + + C     C     ID       E       GCG  QP  T 
Sbjct: 125  VQLILKSPSSSFRLNHLSELCSASRTCR----IDTQSNSKIE-------GCGYPQPSYTK 173

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EG  ++ ++ +Q+++   +E   +  + K+ LT E    VL+ I+ ED + LG  P+ ++
Sbjct: 174  EGPNLMIQF-SQKQRELLEEADEQCNDIKRPLTPEEAFKVLRGITLEDMKCLGFVPERSQ 232

Query: 241  PDWMILQVLPIPPPPVRP---------SDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            P W+ILQVLP+PPP VRP          DDLT +L  +++ N  ++R ++     HII E
Sbjct: 233  PCWLILQVLPVPPPAVRPYVQYGSDRSEDDLTLKLLDVLKTNNLIKRHDKRATAPHIIQE 292

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              QLLQFHI T FDN++PG P A+ RS +PIKSI +RLK KEGR+RGNLMGKRVDFSART
Sbjct: 293  MCQLLQFHITTLFDNDIPGMPIASTRSKKPIKSIRARLKGKEGRLRGNLMGKRVDFSART 352

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VIT DP I ID +GVP SIA+ LT+ ETV   N E L++ VE GPH  PG   AKYIIRD
Sbjct: 353  VITGDPNIPIDTIGVPKSIAMTLTFCETVNSLNYESLRKKVETGPHDWPG---AKYIIRD 409

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            DG R DLR++KKSS+  LE GYKVERH+ DGD++LFNRQPSLHKMSIMGHR KI+PYSTF
Sbjct: 410  DGTRFDLRHVKKSSELQLEYGYKVERHMQDGDYILFNRQPSLHKMSIMGHRAKILPYSTF 469

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            RLNLSVT+PYNADFDGDEMN+H+ Q+ ETRAEV  LM+VPK IVSPQ NRPVMGIVQD+L
Sbjct: 470  RLNLSVTTPYNADFDGDEMNLHLVQTHETRAEVKHLMLVPKQIVSPQGNRPVMGIVQDSL 529

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP----- 586
            L   K TKRDTF+ +D  M++L+W   +DGK+PQP I  P+ LWTGKQV ++++      
Sbjct: 530  LAVSKFTKRDTFLTRDELMSLLIWIPYWDGKLPQPAIFFPKNLWTGKQVISVLLTFNQSQ 589

Query: 587  --KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
                INL R      D D    +  D+ V I K E LSG +CKKT+G S+GSLIH++W E
Sbjct: 590  GITNINLIRDGTIKLDKDNLNCSINDSRVIIRKNEHLSGIICKKTVGCSSGSLIHILWHE 649

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
             GP+  R FL   Q +VN W LQ  F++   D      T+  +   + K+K  V+ L+ Q
Sbjct: 650  AGPEKCRDFLTTLQKVVNNWFLQIGFTVSCSDIYCSESTLNKVYRILDKSKKEVQKLVLQ 709

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            AQ   L+ +PG+++ ESFE +VN+ LN AR+++GS    SL+ +NN+ +MV +GSKGS I
Sbjct: 710  AQKGKLKCQPGKSLFESFEARVNKELNDAREQSGSVVASSLNLTNNILSMVNSGSKGSTI 769

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ ACVGQQNVEGKRIPFGF DR+LPHF K DYGPESRGFV NSYL GLTPQE FFH
Sbjct: 770  NISQIIACVGQQNVEGKRIPFGFRDRSLPHFIKHDYGPESRGFVSNSYLSGLTPQEMFFH 829

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AMGGREG+IDTA KTSETGY+QRRL+KAMED+MV+YD T RN  G+++QFLYGEDGM + 
Sbjct: 830  AMGGREGIIDTACKTSETGYVQRRLIKAMEDVMVQYDRTARNGNGEILQFLYGEDGMGAE 889

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
            +IE Q +D +++   E  + F  +   E++   ++ ++  + + +    + +   E QKL
Sbjct: 890  YIEDQFIDLMRLDDEEIHRRFSHDFRSESYGLGWISEDIRNAILSDFSQQVILVEEFQKL 949

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
               +  +  EI   GD S  LP+N+KR++  A   F       S ++P+E+ +   KL E
Sbjct: 950  LDLKKMICEEIFPGGDYSQHLPINIKRILEYATTQFPASS--TSKLNPVEIAQRTSKLLE 1007

Query: 1005 RLKVVPGEDP---LSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
             L ++    P   LS EAQ+NAT+     LR    S+ +++  +++  A +WV GE+E  
Sbjct: 1008 SLIIINTSGPTDILSEEAQQNATILIKAHLRCHLNSRYLMEHVQISSLALDWVYGEVERC 1067

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F +++  PGE +G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLG+PRL+E+INV   ++
Sbjct: 1068 FFRAIANPGECVGAIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGLPRLKELINVVTNVR 1127

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPSL+++L P +N  +ERAK +Q  LEYT+   +     V YDP    TII+ED E+V+ 
Sbjct: 1128 TPSLTIYLDPSINKDQERAKEMQTLLEYTSFEKIVLGYTVVYDPVVDRTIIKEDYEWVRD 1187

Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDD-DLTCIFNDDNA 1240
            YYE PDE++    +  ++LRI LN ++M DK+L+M  V E I  EF + ++  I+ DDN+
Sbjct: 1188 YYEFPDEEMG--ALGQFVLRIVLNSKIMTDKRLTMKEVGEIIYSEFSNGEIDAIYTDDNS 1245

Query: 1241 DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-------------- 1286
            + L++RIR+      +GE +  S  +  FL K  +++L  + LRGV              
Sbjct: 1246 ELLVMRIRV--KYGGEGENSGPSDTEADFLNKFMTDVLCGIKLRGVKGITKVYMREENCV 1303

Query: 1287 ----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                                  NL +V+    VD  +T SN + EI  V GIEA RRALL
Sbjct: 1304 RYNSTVGSFDRVSQWVLDTDGCNLESVLPITCVDYTKTFSNDVSEIFHVFGIEAARRALL 1363

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
             E+R VISFDG+YVNYRHL++LCD MT +G+LM+ITRHGINR D GP+++CSFEET++ L
Sbjct: 1364 REIRAVISFDGAYVNYRHLSLLCDIMTQKGYLMSITRHGINRADRGPLIKCSFEETLETL 1423

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGM 1444
            L AAVF E D+L+GVTEN+++GQL+P GTG   + +++  L++A +    +  + L    
Sbjct: 1424 LTAAVFGEVDHLKGVTENVIVGQLSPYGTGAFDIMIDEVKLRDANQTNAINVADTLGLVS 1483

Query: 1445 TPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPG 1504
              +      TP     MSP                 FSP    +  SP    G  PS+PG
Sbjct: 1484 PDSSPLSPSTPATKQTMSP---------------MAFSPTYTSLMMSPVGGIGMGPSTPG 1528

Query: 1505 YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPT 1564
                +     +   +SPTSP  SP SP  SP SPT SP SP  S  SP YSP   +YSPT
Sbjct: 1529 LMVDTYALGGS---FSPTSPT-SPMSPT-SPMSPT-SPMSPT-SAISPVYSP---AYSPT 1578

Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPAYSPTSPAYSPTSP 1622
            SP  SPTSP+      + SPTSP YSP   +YSPTSP+   SPTSP YSP   AYSPTSP
Sbjct: 1579 SP-MSPTSPT-----SALSPTSPVYSP---AYSPTSPTSAMSPTSPVYSP---AYSPTSP 1626

Query: 1623 --AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSP 1675
               Y+PTSP Y   SP+YSPT+P+Y      YSPTSP  SPTSPAYSPT P +SP
Sbjct: 1627 NLGYAPTSPVY---SPAYSPTTPNY-----GYSPTSP-LSPTSPAYSPTDP-FSP 1671



 Score =  106 bits (264), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/209 (45%), Positives = 120/209 (57%), Gaps = 45/209 (21%)

Query: 1585 TSPSYSPTSPSYSPTSPSYSPTSP-AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
            T  + SP + S + TS   SP       P++P     + A      S+SPTSP+ SP SP
Sbjct: 1496 TKQTMSPMAFSPTYTSLMMSPVGGIGMGPSTPGLMVDTYALGG---SFSPTSPT-SPMSP 1551

Query: 1644 SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT--YSPTSPSYNPQSAKY 1701
            + SP SP+ SP SP+ S  SP YSP    YSPTSP  SPTSPT   SPTSP Y+P     
Sbjct: 1552 T-SPMSPT-SPMSPT-SAISPVYSP---AYSPTSP-MSPTSPTSALSPTSPVYSP----- 1599

Query: 1702 SPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPS--YSPSSPTYSPSSPYNAGGG 1759
                AYSP+SP     S  SPTSP YSP   +YSPTSP+  Y+P+SP YSP+        
Sbjct: 1600 ----AYSPTSP----TSAMSPTSPVYSP---AYSPTSPNLGYAPTSPVYSPA-------- 1640

Query: 1760 NPDYSPSSPQ--YSPSAGYSPSAPGYSPS 1786
               YSP++P   YSP++  SP++P YSP+
Sbjct: 1641 ---YSPTTPNYGYSPTSPLSPTSPAYSPT 1666


>gi|254583772|ref|XP_002497454.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
 gi|238940347|emb|CAR28521.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
          Length = 1744

 Score = 1544 bits (3998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 801/1565 (51%), Positives = 1073/1565 (68%), Gaps = 99/1565 (6%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
            YS A +  V+ VQFG+ SP+EI  +SV +I+  ET +  + + K GGL+DPRLG+IDR +
Sbjct: 6    YSSAPLRTVKEVQFGLFSPEEICAISVAKIKFPETMDETQTRAKIGGLNDPRLGSIDRSL 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC   M ECPGHFGH+ELAKP+FHIGF+  +  +   VC +C K+L DE + + +QA
Sbjct: 66   KCQTCQEGMNECPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEHNEQMRQA 125

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK-NKGGCGAQQPKLTIEGM 183
            +KI++ K R   +   CK K  C+     DVP    E+P +  ++GGCG  QP +  +G+
Sbjct: 126  IKIKDSKKRFNAVWSLCKAKMICD----TDVPSD--EDPTQLISRGGCGNAQPTIRRDGL 179

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
            K++  +K  +   D++E  PE    ++ L  E +L + K IS ED   LG N ++ARP+W
Sbjct: 180  KLVGSWKKDKNSGDNEE--PE----QRVLNMEEILNIFKHISPEDSWKLGFNEEFARPEW 233

Query: 244  MILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            MIL VLP+PPPPV          R  DDLT +LA I++ N +L   E NGAP H I E  
Sbjct: 234  MILTVLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHTIEEAE 293

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
             LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI
Sbjct: 294  SLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVI 353

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            + DP +++DQ+GVP SIA  LTYPE VTPYNI+RL  LV  GP+  PG   AKY+IRD+G
Sbjct: 354  SGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTMLVRNGPNEHPG---AKYVIRDNG 410

Query: 414  QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
             R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M H++K+MPYSTFRL
Sbjct: 411  DRIDLRYSKRAGDIQLQYGWKVERHVIDNDPVLFNRQPSLHKMSMMAHKVKVMPYSTFRL 470

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP+ IVSPQSN+P MG+VQDTL G
Sbjct: 471  NLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPQQIVSPQSNKPCMGVVQDTLCG 530

Query: 534  CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
             RK+T RD FIE    +N+L W  D+DG +P P ILKP+PLWTGKQ+ ++ IPK I+L R
Sbjct: 531  IRKLTLRDNFIELGQVLNMLYWVPDWDGVIPTPAILKPKPLWTGKQLLSVAIPKGIHLQR 590

Query: 594  TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
                  D    +L+  D  + +  G+++ G + KKT+G+S+G LIHV+  E GP      
Sbjct: 591  F-----DEGTTLLSPKDNGMLVIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQVCATL 645

Query: 654  LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
              + Q +VNYW L   FS GIGDTIAD +TM  I + I++AK  V+++ K+AQ   L  +
Sbjct: 646  FSNIQKVVNYWFLHCGFSTGIGDTIADGQTMRQITEAIAEAKVKVEDVTKEAQANLLTAK 705

Query: 714  PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
             G T+ ESFE+ V + LN ARD+AG  A+ +L+++N +K MV+AGSKGSFINI+QM+ACV
Sbjct: 706  HGMTLRESFEDNVVRYLNEARDKAGRLAEVNLNDTNFVKQMVSAGSKGSFINIAQMSACV 765

Query: 774  GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
            GQQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLI
Sbjct: 766  GQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLI 825

Query: 834  DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDS 893
            DTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLG++IQF+YGEDGMD+  IE Q +++
Sbjct: 826  DTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFIYGEDGMDAAHIEKQAVET 885

Query: 894  LKMKKSEFDKAFRFEMDEENWNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQKLE 945
            +      F++ +R ++     NP+Y L         E I DLK    L+ + D E ++L 
Sbjct: 886  IGGSDRNFERRYRIDL----LNPDYSLDPSLLESGSEIIGDLK----LQSLLDEEYKQLV 937

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR +    I   G+ +WPLPVN++R+I NAQ+TF++D  +PSD+   +VV  V +LQER
Sbjct: 938  EDR-KFLRRIFVDGEVNWPLPVNIRRIIQNAQQTFRIDRSKPSDVTIRDVVWGVKELQER 996

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
            L VV G   +  EAQ++A   F  L+RS  AS+RV++E+RLT++AFEWV+  IE +FL+S
Sbjct: 997  LLVVRGNSRIIKEAQEDAITLFCCLMRSRLASRRVIQEYRLTKQAFEWVLNNIEVQFLRS 1056

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
            +V PGEM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL
Sbjct: 1057 VVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSL 1116

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            + +L+P   + +E+AK ++  +E+TTL+SVT A+E++YDPDP  T I ED E ++ ++ +
Sbjct: 1117 TAYLEPDYAADQEKAKLIRSVIEHTTLKSVTVASEIYYDPDPRSTAIPEDEEIIQLHFSL 1176

Query: 1186 PDEDI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
             D++   +  + SPWLLR+EL+R  M DK L+M  V EKI + F +DL  I+++DNA++L
Sbjct: 1177 LDDETEKSLAQQSPWLLRLELDRAAMNDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEQL 1236

Query: 1244 ILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------------- 1284
            I+R R++    PK    +  AE+D  LKKIE+ ML  + LR                   
Sbjct: 1237 IIRCRVVR---PKSMDLETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPS 1293

Query: 1285 ----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELR 1328
                            GVNL  VM    VDA R  +N  I+I+EVLGIEA R AL  E+ 
Sbjct: 1294 ETGEYQKIPEWVLETDGVNLSEVMTVPGVDASRIYTNSFIDIMEVLGIEAGRAALYKEVF 1353

Query: 1329 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1388
             VI+ DGSYVNYRH+A+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A 
Sbjct: 1354 NVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAG 1413

Query: 1389 VFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMTPA 1447
              AE D  RGV+EN++LGQ+APIGTG   + +++E ++K   E ++   ++G + G TP 
Sbjct: 1414 ASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITELVDGQDGGATPY 1473

Query: 1448 RSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSP 1507
             +        +G+++        L  SP+ D+  +  + G  F+       S  S G +P
Sbjct: 1474 SN-------ENGLINTEVDVKDELMFSPLVDSGSTDAMAG-GFTAYGGGSASFGSYGDAP 1525

Query: 1508 SSPGY 1512
             SPG+
Sbjct: 1526 ISPGF 1530


>gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit, partial [Ilyanassa obsoleta]
          Length = 1343

 Score = 1543 bits (3994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 758/1358 (55%), Positives = 978/1358 (72%), Gaps = 80/1358 (5%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRN--PKNRLKKILD 139
            H+ELAKP+FH+ F+   + IMR VCF CSK+L D + +K K  L      P+ RL  + D
Sbjct: 1    HIELAKPVFHVAFLVKTIKIMRCVCFFCSKLLVDPESNKMKDILGKSKGYPQKRLAHVYD 60

Query: 140  ACKNKTKCEGGDEIDVPGQD------GEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQR 193
             CK +  C+GGDE+D   QD       EE   K  GGCG  QPKL   G++++AE+K   
Sbjct: 61   LCKTRKVCDGGDEMDKKNQDPTAGESTEENAPKGHGGCGRYQPKLRRTGLEIVAEWKNIN 120

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
            +         E  ERK  ++AERVL + KRISDE+  +LG++P++ARPDWMIL V P+PP
Sbjct: 121  E---------ESQERKMIVSAERVLEIFKRISDEESLMLGMDPRFARPDWMILTVFPVPP 171

Query: 254  PPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
             PVRP+          DDLTH+LA I++ N  LRR E+NGA AHII E +++LQ+H +T 
Sbjct: 172  LPVRPAVVMFGSARNQDDLTHKLADIVKANNQLRRNEQNGAAAHIIFEDSKMLQYHCSTL 231

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DNE+PG PRA Q+SGRP+KS+  RLK KEGR+RGNLM KRVDFS RTVITPDP + +DQ
Sbjct: 232  VDNEMPGLPRAVQKSGRPLKSVKQRLKGKEGRVRGNLMDKRVDFSGRTVITPDPNLRVDQ 291

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA NLT+PE VTP+NI+ ++E V  G +  PG   AKYIIRD+G+R+DLR+  K
Sbjct: 292  VGVPRSIAHNLTFPELVTPFNIDVMQERVRRGANVYPG---AKYIIRDNGERIDLRFHPK 348

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +SD HL++GYKVERH+ D D V+FNRQP+LHKMS+M HR+K++P+STFR+NLSVT+PYNA
Sbjct: 349  ASDLHLQIGYKVERHMQDNDVVIFNRQPTLHKMSMMCHRVKVLPWSTFRMNLSVTTPYNA 408

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+H+PQS ETRAE++ L  VP+ I++PQ+NRPVMGIVQDTL   RK+TKRD F
Sbjct: 409  DFDGDEMNLHLPQSLETRAEIMNLCAVPRMIITPQANRPVMGIVQDTLTAVRKMTKRDVF 468

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + +   M++LM+   +DG++PQP I+KP PLWTGKQ+F+L+IP ++N+ RT + H D  D
Sbjct: 469  LTRAQMMHLLMFLPTWDGRMPQPAIIKPEPLWTGKQIFSLVIPGRVNVIRTHSTHPDGED 528

Query: 603  KG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW 659
             G    ++ GDT V IE GEL+SG LCKKTLGTS GSL+H+++ E+G + A +  G+ Q 
Sbjct: 529  SGPYKWISPGDTKVLIEDGELISGILCKKTLGTSAGSLVHIVFLEMGFEVAGELYGNIQT 588

Query: 660  LVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMM 719
            +VN WLL    SIGIGDTIAD +T   I +TI KAK +V  +I++A +  LEP PG T+ 
Sbjct: 589  VVNNWLLIEGHSIGIGDTIADQQTYHEIQETIRKAKADVIEVIEKAHNDELEPTPGNTLR 648

Query: 720  ESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 779
            ++FEN+VN++LN ARD+ GS AQKSLSE NN KAMV AGSKGS INISQ+ ACVGQQN E
Sbjct: 649  QTFENQVNRILNDARDKTGSKAQKSLSEFNNFKAMVVAGSKGSKINISQVIACVGQQNAE 708

Query: 780  GKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 839
            GKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKT
Sbjct: 709  GKRIPFGFRYRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKT 768

Query: 840  SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKS 899
            +ETGYIQRRL+KAME +MVKYDGTVRN +  ++Q  YGEDG+D+  +E Q+L +LK    
Sbjct: 769  AETGYIQRRLIKAMESVMVKYDGTVRNQVEQLVQLGYGEDGLDACHVEFQSLPTLKPSTR 828

Query: 900  EFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSG 959
             F++ FRF+  +E      + ++ I  L+    L +  ++E  +L +DR   A ++ ++G
Sbjct: 829  AFERQFRFDPTDERMMKRCLKEDVIKGLRGEHRLIEELESEWLQLISDRDS-ARQVFSTG 887

Query: 960  DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEA 1019
            D+   LP NL+R+IWNAQK F++D R+PSD+ P+ VV  V  L +RL +V GED +S +A
Sbjct: 888  DARIVLPCNLQRMIWNAQKIFRIDKRKPSDLDPINVVSGVRDLCQRLTIVEGEDMISKQA 947

Query: 1020 QKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQ 1079
             +NATL    L+RST  +KRV +EHRL+ +AF W++GEIE+RF Q+   PGEM+G +AAQ
Sbjct: 948  NENATLLMKCLIRSTLCAKRVAEEHRLSEDAFNWLLGEIETRFQQAQAHPGEMVGALAAQ 1007

Query: 1080 SIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER 1139
            S+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIIN++KK KTPSL+V+L        E+
Sbjct: 1008 SLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLNGPAARDAEK 1067

Query: 1140 AKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWL 1199
             K+V C LE+TTLR VT  T ++YDPDPM T+I ED E+V  YYEMPD D +  +ISPWL
Sbjct: 1068 CKDVLCRLEHTTLRKVTANTAIYYDPDPMNTVIVEDQEWVSIYYEMPDFDAS--RISPWL 1125

Query: 1200 LRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGEL 1259
            LRIEL+R+ M DKKL+M  ++EKI   F DDL CIFNDDNA+KL+LRIRIMN +  K + 
Sbjct: 1126 LRIELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDSKMQD 1185

Query: 1260 NDE---SAEDDVFLKKIESNMLTEMALRGV------------------------------ 1286
             +E     EDDVFL+ IESN+L++M L+G+                              
Sbjct: 1186 EEEVVDKMEDDVFLRCIESNLLSDMTLQGIEAIAKVYMHLPTTDDKKRIHITEEGEFKAV 1245

Query: 1287 ----------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336
                      +L+ V+   DVD  RT +N ++E+   LGIEAVR+A+  E+  VISFDGS
Sbjct: 1246 AEWILETDGSSLMKVLSERDVDPVRTYTNDIVEVFATLGIEAVRKAIEREMVHVISFDGS 1305

Query: 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
            YVNYRHLA+LCD MT +GHLMAITRHGINR +TG + R
Sbjct: 1306 YVNYRHLALLCDVMTAKGHLMAITRHGINRQETGALAR 1343


>gi|12642616|gb|AAK00312.1|AF315822_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monoblepharis
            macrandra]
          Length = 1603

 Score = 1542 bits (3992), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 800/1579 (50%), Positives = 1040/1579 (65%), Gaps = 114/1579 (7%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELAKP+FH GF+ T+  ++ SVC  C K+ +D+ D  F +  ++R+ + R 
Sbjct: 1    ECPGHFGHIELAKPVFHEGFVTTIKKLLESVCLFCGKLKSDDSDPDFFRKSRLRDRRARF 60

Query: 135  KKILDACKNKTKCEGGDE-----IDVPGQDGEEPLKKNKG---GCGAQQPKLTIEGMKMI 186
              +   CK K  C+G +E          Q G   L + KG   GCG +QPK+  EG+ ++
Sbjct: 61   TGVWSLCKTKMVCQGSEEDADEEQQQQQQQGANLLGRRKGAHGGCGRRQPKIRKEGLTLL 120

Query: 187  AEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMIL 246
            A Y    K+ +D +  P P      L  ++V  +L +ISD DC  LGLNP+++RP+WMI+
Sbjct: 121  AHYA---KETEDADLAPRP------LLPDQVQKILLQISDADCVSLGLNPEWSRPEWMII 171

Query: 247  QVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
             VLP+PPP VRPS           DDLT++LA I++ N +L+R E++G P H+++EF  L
Sbjct: 172  TVLPVPPPQVRPSVVGDGTGLRSQDDLTYKLADILKANASLKRHEQDGGPTHVVNEFWDL 231

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQ+H+AT  DN++ G P A Q+ GRPIK I  RLK KEGR+RGNLMGKRVDFSARTVIT 
Sbjct: 232  LQYHVATMMDNQISGLPVAQQKGGRPIKGIRQRLKGKEGRLRGNLMGKRVDFSARTVITG 291

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP I+ID++GVP SI  NLT+PE V  YN + L++LV  G +  PG   A  +IR +G  
Sbjct: 292  DPNISIDEVGVPRSICRNLTFPEIVNDYNRDHLQKLVANGTNEYPG---ANRVIRANGDI 348

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
            + L++   S +  L +G +VERHL DGD+++FNRQPSLHKMS+MGH++++MP+STFRLNL
Sbjct: 349  VSLKHTAGSGETLLNIGDRVERHLVDGDYIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNL 408

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            SVTSPYNADFDGDEMN+H PQS+ETRAE++E+M VP+ I+SP+ N+PVMGIVQDTL G R
Sbjct: 409  SVTSPYNADFDGDEMNLHAPQSYETRAEIMEIMRVPRQIISPKHNQPVMGIVQDTLCGIR 468

Query: 536  KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
            K T RD F+ +D+ MNILMW ED+DG +P P I+KP PLWTGKQ+ +L IP  INL   +
Sbjct: 469  KFTIRDNFLSRDMVMNILMWVEDWDGVIPLPAIVKPVPLWTGKQMMSLAIP-DINLVGFS 527

Query: 596  AWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLG 655
            A H D++KG ++ GDT V IE G +LSGT+CKKT+G+S G +IH I  E GPDAA+KF  
Sbjct: 528  ATHPDDEKGDMSVGDTKVIIEGGTILSGTMCKKTVGSSAGGVIHTIMNEHGPDAAKKFFN 587

Query: 656  HTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPG 715
             TQ +VNYWLL N FS+GIGDTIAD  TM++I DTI KAK +V  +IK AQ   L+ EPG
Sbjct: 588  GTQKIVNYWLLHNGFSVGIGDTIADGVTMQSITDTIKKAKADVAEIIKNAQANKLDAEPG 647

Query: 716  RTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQ 775
             T+ E+FE+KVN+VLN ARD+AG  A+KSL   NN+K MV AGSKGSFINISQMTACVGQ
Sbjct: 648  MTVRETFESKVNKVLNKARDDAGKKAEKSLKIYNNVKQMVIAGSKGSFINISQMTACVGQ 707

Query: 776  QNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 835
            QNVEGKRIP+GF  RTLPHFTKDD+ PESRGFVENSYLRGL+PQEFFFHAMGGREGLIDT
Sbjct: 708  QNVEGKRIPYGFRYRTLPHFTKDDHSPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDT 767

Query: 836  AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLK 895
            AVKT+ETGYIQRRLVKA+ED+MVKYDGTVRNSLG V+QF+YGEDGMD+  +E Q L++++
Sbjct: 768  AVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGHVVQFVYGEDGMDATGVERQQLETIR 827

Query: 896  MKKSEFDKAFRFEM---DEENWNPNYMLQEYIDDL--KTIKELRDVFDAEVQKLEADRYQ 950
            M + EF + ++ ++   +   W P  +  +   +L    + E   V + E  +L  DR  
Sbjct: 828  MTEEEFKRRYKLDLMTPETRKWLPTVVTNDVRHELLGDGMDENAKVLEMEYTQLVEDRNV 887

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            +   I  +GDS+WPLP N++RLIWNA+   K+     S++ P E+V  V+ L  R  V+ 
Sbjct: 888  MRNFIFRNGDSNWPLPSNIRRLIWNARNMAKISHNTLSNLRPEEIVRDVNDLLSRCIVIT 947

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            GED LS  AQ NATL FNIL+R   A+KRV  EHRL R AF W+IGEIESRF  + V P 
Sbjct: 948  GEDGLSTMAQHNATLLFNILVRHLLATKRVYAEHRLNRNAFRWLIGEIESRFKAAKVNPA 1007

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQSIGEPATQMTLNTFH+AGV +KNVTLGVPRL+EIINVA  ++TPSL V LK
Sbjct: 1008 EMVGTIAAQSIGEPATQMTLNTFHFAGVGSKNVTLGVPRLKEIINVATNLRTPSLLVCLK 1067

Query: 1131 PGVNST---KERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD 1187
               +       +AK +Q  +EYTTL  +   +EV+YDPD   +++E D +++ +Y+E+ D
Sbjct: 1068 ANKDGRPLDLPQAKKIQAKIEYTTLGKLAVQSEVYYDPDLRNSVVEADRDWLDAYFEIED 1127

Query: 1188 EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI 1247
             D    ++S W LRIE++R   +DK +SM+ +A KI+ ++ D L  + +DDNA  L L I
Sbjct: 1128 ADALQARLSSWALRIEIDRGRRIDKDISMSEIARKISSQYQDVLHVMHSDDNAPSLALVI 1187

Query: 1248 RIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMAL------------------------ 1283
            RI  DEA +  L + +  +DV L+ +ES ++  +AL                        
Sbjct: 1188 RINQDEAMQESLKESAQTEDVILRDVESQLMASLALGGITNIRRVYISEQKVAVQNTATG 1247

Query: 1284 ------------RGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
                         G+NL  VM  E+VD  RT SN  +EI  VLGIEA R ALL E+R VI
Sbjct: 1248 AIEQAQEHILETDGINLREVMAVEEVDFTRTYSNAPLEIYAVLGIEAGRAALLKEIRKVI 1307

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
             FDGSYVNYRHLA+L D M  +G LM+ITRHGINR + G + R SFEETV+IL+DAA   
Sbjct: 1308 EFDGSYVNYRHLALLVDVMCQKGGLMSITRHGINRTENGALARSSFEETVEILMDAAGSG 1367

Query: 1392 ESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPV 1451
            E+D  RGV+ENI+LGQLAP+GTG+  + L++++L    E    S   GL      A    
Sbjct: 1368 ETDICRGVSENIILGQLAPLGTGEFDVLLDEQVL----EANARSATGGLYTNSYTADFSG 1423

Query: 1452 SGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPG 1511
              TP H   MSP             + AQF P          +SPG +P    Y    P 
Sbjct: 1424 GKTPDHRAPMSP-------------SGAQFYP----------ASPGGAPYE-NYPGDQPM 1459

Query: 1512 YSPTSPGYSPTSPGYSP-TSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSP 1570
            +SP        +  ++P  S G SP + T+    P         SP+SP YS    S+  
Sbjct: 1460 FSPIGVDSGRDTGRWTPGMSGGQSPYASTHR-CDPRLMNKRSLRSPSSPVYSMWLASFGL 1518

Query: 1571 TSP--------SYSPTSPS 1581
              P          SPTSP 
Sbjct: 1519 LQPFLIVRCFGVISPTSPG 1537


>gi|326431524|gb|EGD77094.1| polymerase II polypeptide A [Salpingoeca sp. ATCC 50818]
          Length = 1834

 Score = 1541 bits (3991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 806/1662 (48%), Positives = 1073/1662 (64%), Gaps = 130/1662 (7%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCE 67
            S A + K + ++FGILSPDEI+  SV +I   E  E G PKPGGLSDPR+G IDR ++CE
Sbjct: 9    SVAPLRKAKRIKFGILSPDEIKAGSVCEITTPEHQENGVPKPGGLSDPRMGPIDRDLRCE 68

Query: 68   TCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK- 126
            TC    +ECPGHFGH++LAKP+ H+G +  ++ ++R +C +CSK+L D  D + K+ L+ 
Sbjct: 69   TCHGTASECPGHFGHIDLAKPVVHVGMISKIVQVLRCICKSCSKLLVDLSDDEVKEILRR 128

Query: 127  -IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDG------EEPLKKNKGGCGAQQPKLT 179
               +PK RLK I   C  +  CE G  +D    D       EE  K+   GCGA+QPK  
Sbjct: 129  TKNDPKKRLKAIAKKCAGRKVCEAGTGMDDDRPDDIQLSPEEELEKQGHSGCGAEQPKSV 188

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
                +     +   +  DD   +       +T++ E +  +L  IS  D + LG +P + 
Sbjct: 189  RRSTEPGHTLEIIMETKDDNGLVT-----ARTMSTEEIYELLHNISHADAEALGFDPHHT 243

Query: 240  RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            RPDW+++  LP+PP  VRPS          DDLT+Q A I++ N  LR  E++GAP H+I
Sbjct: 244  RPDWLMITCLPVPPLAVRPSVQMGSGGRSHDDLTNQYAEIVKANNGLRENEQSGAPRHVI 303

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
             E    LQF +AT FDN LP  P + Q+SGRPIK+I  RLK KEGRIRGNLMGKRVDFSA
Sbjct: 304  EENVLYLQFKVATLFDNNLPHMPMSMQKSGRPIKAISQRLKGKEGRIRGNLMGKRVDFSA 363

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVI PDP + IDQ+GVP S+AL LT PE VT +NI  +K+ V+ GP+  PG   AKYII
Sbjct: 364  RTVINPDPNLEIDQVGVPTSVALTLTVPERVTNFNINTMKQYVDRGPNQHPG---AKYII 420

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            RDDGQR+DLR+ + + D +L+ GY VERHL D D ++FNRQP+LHKMS+MGHR+K++P+S
Sbjct: 421  RDDGQRIDLRHARNAMDLNLQPGYIVERHLKDDDVIIFNRQPTLHKMSMMGHRVKVLPWS 480

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFR+NLSVTSPYNADFDGDEMN+HVPQS  TRAEV E+MMV + I++PQ+NRPVMGI+QD
Sbjct: 481  TFRMNLSVTSPYNADFDGDEMNLHVPQSLGTRAEVEEIMMVQRNILTPQANRPVMGIIQD 540

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK+T RDTFIEKD  M +LMW+ ++DG++P+P +LKP+ LWTGKQ+ ++++P +I
Sbjct: 541  TLTAIRKLTFRDTFIEKDDMMQLLMWYPNWDGRLPEPALLKPKELWTGKQLVSMVLPDKI 600

Query: 590  NLFRTAAWH-------ADNDKGIL--------TAGDTLVRIEKGELLSGTLCKKTLGTST 634
            NL +  + H        D D  ++        T  DT V I+ G+L+SG LCKKT+G   
Sbjct: 601  NLVQFYSQHDGSVDTPRDKDGNVIEAEDATHITQHDTRVLIQNGKLISGILCKKTMGARA 660

Query: 635  GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKA 694
              +IHVI  E G + AR+F G+ Q +VN WLL +  SIGIGD IAD  T +TI+   + A
Sbjct: 661  NGVIHVIMMEHGHERARQFYGNVQTVVNNWLLIHGHSIGIGDAIADTHTYDTIDSEKAAA 720

Query: 695  KNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAM 754
               V  LI+ AQ   +EP PG T+ ++FE KVN+ LN    + G + QK+LSE NN KAM
Sbjct: 721  NEKVNELIQDAQLDKIEPSPGHTIRQTFEAKVNKNLNQVIKKTGGAVQKALSEHNNFKAM 780

Query: 755  VTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLR 814
             TAGSKGS INISQ+ ACV QQNVEGKRIPFGF  R+LPHF KDDYGP + GFV +SY++
Sbjct: 781  STAGSKGSEINISQIIACVSQQNVEGKRIPFGFRHRSLPHFVKDDYGPHACGFVFSSYIQ 840

Query: 815  GLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQF 874
            GL P EFFFHAMGGREGLIDTAVKT+ETGYIQRRLVK+ME + ++YDGTVRNS GD++Q 
Sbjct: 841  GLEPHEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKSMEGLRLEYDGTVRNSTGDLVQL 900

Query: 875  LYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELR 934
             YGEDGMD   +ESQ+L +LK+  + F+K F   +        ++ ++ +DDL   ++  
Sbjct: 901  HYGEDGMDGALVESQSL-TLKLDNATFEKRFLTNVANTRSLRRFLTEDVVDDLAASQDAA 959

Query: 935  DVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPME 994
                 E ++L  DR +L  ++   G+ +  LPVNL RL+WNAQK F +D  +PSD++P+ 
Sbjct: 960  QQLLDEYEQLIRDRDEL-RKVHDRGNETVVLPVNLHRLLWNAQKLFHIDGTQPSDLNPLY 1018

Query: 995  VVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWV 1054
             + +++ L ++L VVPG+DP+SV AQ++ TL F   LRS  A+ R++ EHRLTREAFEWV
Sbjct: 1019 ALTSINALTKKLIVVPGDDPISVAAQESTTLQFCCHLRSMLATNRLIHEHRLTREAFEWV 1078

Query: 1055 IGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII 1114
            +GEIE RF QS   P EM+G +AAQ +GEP TQMTLNTFH AG SAKNVTLGVPRL+EII
Sbjct: 1079 LGEIEHRFAQSQAQPAEMVGPLAAQCLGEPTTQMTLNTFHQAGYSAKNVTLGVPRLKEII 1138

Query: 1115 NVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEE 1174
            NV++  KTPS+ +FL    +  +  A      LEYT L +V + + + +DPD   TII+E
Sbjct: 1139 NVSRNPKTPSMLLFLDEQASDNETLALRCLYDLEYTPLSAVVKKSSICFDPDERNTIIQE 1198

Query: 1175 DVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCI 1234
            D+EF++ Y++ P  D  PE +SPW+LR+EL+   M  + +S   + EKI    +  + C+
Sbjct: 1199 DLEFLQDYFDDP--DYHPEDLSPWVLRLELDSVQMTLRDVSCDMIEEKIESYLESTVKCV 1256

Query: 1235 FNDDNADKL-ILRIRIMNDEAPKGELNDESAED-----------------DVFLKKIE-- 1274
            +  + A K  ++RIR+      K E N+E  ED                 ++ LK +E  
Sbjct: 1257 YTTNAAAKQKVMRIRLT-----KVEENEEGMEDFMSADRLLRLVEERLLKNLHLKGVEEI 1311

Query: 1275 -----------------------------SNMLTEMALRGVNLLAVMCHEDVDARRTTSN 1305
                                         S  + E    G +L  V+ H  VD   +++N
Sbjct: 1312 SRGYISKPETKEPEKLKRYYDENGTFQSKSGWIIET--DGSSLAKVLSHPHVDPENSSTN 1369

Query: 1306 HLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1365
             ++E+ +V GIEA R+A+ +E+  V++  G+ VNYRHL++LCD MT +G LMAITRHGIN
Sbjct: 1370 DIVEVFQVFGIEAARKAVENEIINVVTSGGANVNYRHLSLLCDIMTNKGSLMAITRHGIN 1429

Query: 1366 RNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEML 1425
            R  TG +MR SFEETVDILL+AA  AE+D +RGV+ENIMLG LAP+GTG   L+++ +ML
Sbjct: 1430 RQSTGALMRASFEETVDILLEAAAHAETDTMRGVSENIMLGNLAPVGTGYFDLFIDRDML 1489

Query: 1426 KNAIELQ---------LPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNL--RLS 1474
              AI  +         +    EG + G   A      TP+        +  SP++    +
Sbjct: 1490 SQAITFRPTDLVGDDDILGAEEGDDLGEGAA------TPWTSARTPAHFAASPSIVGGQT 1543

Query: 1475 PVTDAQFSPYVGGMAFSPTSSPGYSP--SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSP- 1531
            P+   QF+P     AF  T SPG SP   SPG+   SP Y+P SP Y+P SPGYSPTSP 
Sbjct: 1544 PIM-GQFTP---DHAFDGTLSPGRSPVADSPGFGAMSPSYNPASPRYAPQSPGYSPTSPR 1599

Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP 1573
              +  SP YSP+SPGYSPTSP      P  SPTSPSYSPTSP
Sbjct: 1600 ADAAASPMYSPTSPGYSPTSP-----KPGQSPTSPSYSPTSP 1636



 Score = 96.3 bits (238), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 73/132 (55%), Gaps = 15/132 (11%)

Query: 1546 GYSPTSPAYSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1601
            G    +P  S  +P++   SPS     +P    ++P        SP  SP +      SP
Sbjct: 1516 GEGAATPWTSARTPAHFAASPSIVGGQTPIMGQFTPDHAFDGTLSPGRSPVA-----DSP 1570

Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
             +   SP+Y+P SP Y+P SP YSPTSP + +  SP YSPTSP YSPTSP      P  S
Sbjct: 1571 GFGAMSPSYNPASPRYAPQSPGYSPTSPRADAAASPMYSPTSPGYSPTSP-----KPGQS 1625

Query: 1661 PTSPAYSPTSPG 1672
            PTSP+YSPTSPG
Sbjct: 1626 PTSPSYSPTSPG 1637



 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 67/120 (55%), Gaps = 11/120 (9%)

Query: 1600 SPSYSPTSPAYSPTSPAY----SPTSPAYSPTSPSYSPTSPSYSPT--SPSYSPTSPSYS 1653
            +P  S  +PA+   SP+     +P    ++P        SP  SP   SP +   SPSY+
Sbjct: 1521 TPWTSARTPAHFAASPSIVGGQTPIMGQFTPDHAFDGTLSPGRSPVADSPGFGAMSPSYN 1580

Query: 1654 PTSPSYSPTSPAYSPTSP-GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSP 1712
            P SP Y+P SP YSPTSP   +  SP YSPTSP YSPTSP   P  +  SPS  YSP+SP
Sbjct: 1581 PASPRYAPQSPGYSPTSPRADAAASPMYSPTSPGYSPTSPK--PGQSPTSPS--YSPTSP 1636



 Score = 70.1 bits (170), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 16/128 (12%)

Query: 1672 GYSPTSPSYSPTSPTYSPTSPSY----NPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY 1727
            G    +P  S  +P +   SPS      P   +++P  A+  +   LSP       SP +
Sbjct: 1516 GEGAATPWTSARTPAHFAASPSIVGGQTPIMGQFTPDHAFDGT---LSPGRSPVADSPGF 1572

Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSA--PGYSP 1785
               S SY+P SP Y+P SP YSP+SP      +P YSP+SP      GYSP++  PG SP
Sbjct: 1573 GAMSPSYNPASPRYAPQSPGYSPTSPRADAAASPMYSPTSP------GYSPTSPKPGQSP 1626

Query: 1786 SSTSQYTP 1793
            +S S Y+P
Sbjct: 1627 TSPS-YSP 1633


>gi|353251633|pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
            Vp16-Mediator-Pol Ii-Tfiif Assembly
          Length = 1455

 Score = 1538 bits (3983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 783/1472 (53%), Positives = 1031/1472 (70%), Gaps = 80/1472 (5%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
            YS A +  V+ VQFG+ SP+E+R +SV +I   ET +  + + K GGL+DPRLG+IDR +
Sbjct: 6    YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC   M ECPGHFGH++LAKP+FH+GF+  +  +   VC +C K+L DE +   +QA
Sbjct: 66   KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            L I++ K R   I   CK K  CE     DVP +D    L  ++GGCG  QP +  +G+K
Sbjct: 126  LAIKDSKKRFAAIWTLCKTKMVCE----TDVPSEDDPTQLV-SRGGCGNTQPTIRKDGLK 180

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            ++  +K  R   D  E  PE     + L+ E +L + K IS +D   LG N  ++RP+WM
Sbjct: 181  LVGSWKKDRATGDADE--PEL----RVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWM 234

Query: 245  ILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            IL  LP+PPPPV          R  DDLT +LA I++ N +L   E NGAP H I E   
Sbjct: 235  ILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAES 294

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+
Sbjct: 295  LLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS 354

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + +DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD G 
Sbjct: 355  GDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDSGD 411

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLN
Sbjct: 412  RIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLN 471

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G 
Sbjct: 472  LSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGI 531

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK+T RDTFIE D  +N+L W  D+DG +P P I+KP+PLW+GKQ+ ++ IP  I+L R 
Sbjct: 532  RKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQR- 590

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
                 D    +L+  D  + I  G+++ G + KKT+G+S G LIHV+  E GP    K  
Sbjct: 591  ----FDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLF 646

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
            G+ Q +VN+WLL N FS GIGDTIAD  TM  I +TI++AK  V ++ K+AQ   L  + 
Sbjct: 647  GNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKH 706

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G T+ ESFE+ V + LN ARD+AG  A+ +L + NN+K MV AGSKGSFINI+QM+ACVG
Sbjct: 707  GMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG 766

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 767  QQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLID 826

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDGMD+  IE Q+LD++
Sbjct: 827  TAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTI 886

Query: 895  KMKKSEFDKAFRFEM--DEENWNPNYML--QEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
                + F+K +R ++   +   +P+ +    E + DLK    L+ + D E ++L  DR +
Sbjct: 887  GGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLK----LQVLLDEEYKQLVKDR-K 941

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
               E+   G+++WPLPVN++R+I NAQ+TF +D  +PSD+   ++V  V  LQE L V+ 
Sbjct: 942  FLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLR 1001

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G++ +   AQ++A   F  LLRS  A++RVL+E+RLT++AF+WV+  IE++FL+S+V PG
Sbjct: 1002 GKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPG 1061

Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
            EM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L+
Sbjct: 1062 EMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLE 1121

Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
            PG  + +E+AK ++ A+E+TTL+SVT A+E++YDPDP  T+I ED E ++ ++ + DE+ 
Sbjct: 1122 PGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEA 1181

Query: 1191 AP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
                ++ SPWLLR+EL+R  M DK L+M  V E+I Q F +DL  I+++DN +KLI+R R
Sbjct: 1182 EQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCR 1241

Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------------------ 1284
            ++    PK    +  AE+D  LKKIE+ ML  + LR                        
Sbjct: 1242 VVR---PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEY 1298

Query: 1285 -----------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
                       GVNL  VM    +D  R  +N  I+I+EVLGIEA R AL  E+  VI+ 
Sbjct: 1299 VKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIAS 1358

Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
            DGSYVNYRH+A+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A   AE 
Sbjct: 1359 DGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAEL 1418

Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSLYLNDEML 1425
            D  RGV+EN++LGQ+APIGTG   + +++E L
Sbjct: 1419 DDCRGVSENVILGQMAPIGTGAFDVMIDEESL 1450


>gi|429851276|gb|ELA26479.1| DNA-dependent RNA polymerase ii largest [Colletotrichum
            gloeosporioides Nara gc5]
          Length = 1754

 Score = 1521 bits (3937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 793/1571 (50%), Positives = 1071/1571 (68%), Gaps = 109/1571 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
            F +S A +  V  +QFG+++P+EI+ MSV  + + ET +  R KP+ GGL+DP LG+IDR
Sbjct: 6    FTHSSAPIKTVEEIQFGLMAPEEIKNMSVCHVLYPETMDETRTKPRDGGLNDPMLGSIDR 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
            + KC+TC   M ECPGHFGH+ELAKP++H GF+K V  ++  VC NCSK+LAD  D +F 
Sbjct: 66   QFKCKTCNQAMGECPGHFGHIELAKPVYHPGFIKKVKKVLEIVCHNCSKVLADRSDPEFL 125

Query: 123  QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK-----NKGGCGAQQPK 177
            QA+  R+PK R  +I + CK KT+CE  +  +V   DGE  L       N GGCG  QP+
Sbjct: 126  QAVNTRDPKVRFNRIWNICKKKTRCEN-ETKEVKNDDGEYSLGMKQAPVNHGGCGNIQPR 184

Query: 178  LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
            +  + +++IA+Y++  +    +++ P+       +T E    +L+RISD+D + +GLN +
Sbjct: 185  VRHKALQLIAKYESSGEDGVKKKEEPQ-------ITPEMAHNILRRISDDDLRDMGLNLE 237

Query: 238  YARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGA 284
            YARP+WMI+ V             +      +R  DDLT++L  IIR N N+++  R G+
Sbjct: 238  YARPEWMIVTVLPVPPPPVRPSISMDGTGQGLRNEDDLTYKLGDIIRANSNVKQAIREGS 297

Query: 285  PAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKR 344
            PAHI  +F QLLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KEGR+RGNLMGKR
Sbjct: 298  PAHIAQDFEQLLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKR 357

Query: 345  VDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTG 404
            VDFSARTVIT D  +++D++GVP SIA  LTYPETVTPYNI RL ELV+ GP+  PG   
Sbjct: 358  VDFSARTVITGDANLSLDEVGVPRSIARTLTYPETVTPYNIGRLHELVQNGPNEHPG--- 414

Query: 405  AKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIK 464
            AKY+IR DG R+DLR+ +++    LE G+KVERHL  GD+++FNRQPSLHK S+MGHR++
Sbjct: 415  AKYVIRSDGTRIDLRHHRRAGQISLEYGWKVERHLITGDYIIFNRQPSLHKESMMGHRVR 474

Query: 465  IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 524
            +MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV EL +VP  IVSPQ N P+M
Sbjct: 475  VMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVKELCLVPINIVSPQRNGPLM 534

Query: 525  GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLI 584
            GIVQDTL G  K+ +RD F+ K+  MNI++W  ++DG +P P I++PRP WTGKQ+ ++ 
Sbjct: 535  GIVQDTLAGAYKLCRRDVFLTKEAVMNIMLWVPNWDGVIPPPAIIRPRPRWTGKQIMSMA 594

Query: 585  IPKQINLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            IP  ++L        DN   D+G+L        I+ GELL G L KK +G ++G ++H++
Sbjct: 595  IPNIVSLHNAPDSKEDNPLKDEGLL--------IQSGELLYGLLSKKNIGAASGGIVHIV 646

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E GP+A+ KFL   Q +VNYWLL N FSIGIGDTI D  T+E +   I + K  V+  
Sbjct: 647  YNEHGPEASMKFLNGVQQVVNYWLLHNGFSIGIGDTIPDKLTIEKVQVHIDEHKAEVEAY 706

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
             +QA    LEP PG  + E+FE+KV++ LNTARD+AG++ QKSL + NN   M ++GSKG
Sbjct: 707  TQQATANELEPLPGMNIRETFESKVSKALNTARDKAGTTTQKSLKDLNNAVTMASSGSKG 766

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYLRGLTP EF
Sbjct: 767  SSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEF 826

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  KYDGTVRNSLGD++QFLYGEDG+
Sbjct: 827  FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVSAKYDGTVRNSLGDILQFLYGEDGL 886

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
            D+++IE Q +D L M   +F   FR ++ +E         EY +++     ++ + D E 
Sbjct: 887  DAIYIEKQRMDHLNMSDKKFADRFRLDVMDETRPDELDWLEYGNEISGDPSVQQLLDEEY 946

Query: 942  QKLEADRYQL-ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            + L  DR Q+         D S  LP+N+ RL+  ++K F V+  + SD+ P +V+ AV 
Sbjct: 947  EALLHDRKQVRKINFKRKDDESMQLPLNIVRLMETSKKLFAVEDFQRSDLKPQDVIPAVQ 1006

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             +  R+ +V G D +S EA ++AT+ F   +RS  A KR+  + RL + AFE V+GE+E+
Sbjct: 1007 AMLNRMTIVRGNDEISKEADRSATILFKAQIRSRLAFKRIACQQRLNKMAFEHVLGELEA 1066

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            R+ ++ V+PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+N+A+ I
Sbjct: 1067 RWDRAFVSPGEMVGVIAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNLAQNI 1126

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            KTPS+ V+L    N+++E AK ++  +E+TTLRSVT  TE++YDP    T I +D++ V+
Sbjct: 1127 KTPSMVVYLSGEENASQEAAKALRSTVEHTTLRSVTAVTEIYYDPIITSTNIPDDLDMVE 1186

Query: 1181 SYYEMPDE--DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDD 1238
            SYY +PDE  D A ++ S WLLR+ L+R+ ++DK+L++  VA +I +E+ +DL  IF+D+
Sbjct: 1187 SYYLIPDETHDRAEDQ-SRWLLRLTLDRQKLLDKELTVEDVARRIKEEYPNDLAVIFSDN 1245

Query: 1239 NADKLILRIRIM---NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVN-------- 1287
            NA++ ++RIR M   ND+  K E  ++  EDDV LK++E+++L  ++LRGV         
Sbjct: 1246 NAEEQVIRIRPMHAGNDD--KDEDGEKKMEDDVMLKRLETHLLDTLSLRGVKGIERAFLN 1303

Query: 1288 ------------LLA---------------------VMCHEDVDARRTTSNHLIEIIEVL 1314
                        LLA                     V+  + VD+ RT +NHL +++EV 
Sbjct: 1304 KETKLIETEDGALLAAKADERCSEWYLDTSGTALRQVLSVDGVDSTRTYTNHLWQVVEVF 1363

Query: 1315 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
            GIEA R AL+ EL  V++FDGSYVN+RHLA+LCD MTYRG + A+TRHGINR DTG +MR
Sbjct: 1364 GIEAARSALVRELTQVLAFDGSYVNHRHLALLCDVMTYRGTISAVTRHGINRADTGALMR 1423

Query: 1375 CSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLP 1434
            CSFEETV+ILL+AA   E D  RG++EN+MLGQ+AP+GTG   + L+ +ML+  I     
Sbjct: 1424 CSFEETVEILLEAAAVGELDDCRGISENVMLGQMAPMGTGHFEVLLDPKMLETVIS---D 1480

Query: 1435 SYMEGLEFGMTPARSPVSG---TPYHDG--MMSPGYLFSPNLRLSPVTDAQFSPYVGGMA 1489
            +   GL  GM P +   +G   TPY  G  M   GY     L LS      FSP VG  +
Sbjct: 1481 NSRMGLMPGM-PVKGGEAGGAATPYDSGSPMADSGY-----LSLSSPAAGNFSPIVGAGS 1534

Query: 1490 FSPTSSPGYSP 1500
             SP    G+ P
Sbjct: 1535 DSPA---GFEP 1542


>gi|367011663|ref|XP_003680332.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
 gi|359747991|emb|CCE91121.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
          Length = 1727

 Score = 1517 bits (3928), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 795/1558 (51%), Positives = 1054/1558 (67%), Gaps = 116/1558 (7%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
            YS A +  V+ VQFG+ SP+E+R +SV +I   ET +  + + K GGL+DPRLG+IDR +
Sbjct: 6    YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            KC+TC   M ECPGHFGH++LAKP+FHIGF+  +  +   VC +C K+L D+ + + +QA
Sbjct: 66   KCQTCQEGMNECPGHFGHIDLAKPVFHIGFITKIKKVCECVCMHCGKLLLDDHNEQMRQA 125

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK-NKGGCGAQQPKLTIEGM 183
             KI++ K R   I   CK K  CE     DVP +  E+P K  ++GGCG  QP +  +G+
Sbjct: 126  CKIKDSKKRFNAIWTLCKTKMICES----DVPSE--EDPTKLISRGGCGNAQPTVRKDGL 179

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
            K++  +K ++   D +E  PE    ++ LT E +L + K IS ED   LG N ++ARP+W
Sbjct: 180  KLVGSWKKEKNTGDPEE--PE----QRILTMEEILNIFKHISKEDSNRLGFNEEFARPEW 233

Query: 244  MILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            MIL VLP+PPPPV          R  DDLT +LA I++ N +L   E NGAP H I E  
Sbjct: 234  MILTVLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAE 293

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
             LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI
Sbjct: 294  SLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVI 353

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            + DP + +DQ+GVP SIA  LTYPE VTPYNI+RL  LV  GP+  PG   AKY+IRD+G
Sbjct: 354  SGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTFLVRNGPNEHPG---AKYVIRDNG 410

Query: 414  QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
             R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTFRL
Sbjct: 411  DRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRL 470

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G
Sbjct: 471  NLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCG 530

Query: 534  CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
             RK+T RD FIE D  +N+L W  D+DG +P P I+KP+PLWTGKQ+ ++ IPK I+L R
Sbjct: 531  IRKLTLRDNFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWTGKQILSIAIPKGIHLQR 590

Query: 594  TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
                  D    +L+  D  + I  G+++ G + KKT+G+S+G LIHV+  E GP    + 
Sbjct: 591  -----FDEGTTLLSPKDNGMLIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPQICARL 645

Query: 654  LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
             G+ Q +VNYW L N FS GIGDTIAD +TM  I +TI+ AK  V+++ K+AQ   L  +
Sbjct: 646  FGNIQKVVNYWFLHNGFSTGIGDTIADGQTMREITETIADAKKKVEDVTKEAQANLLTAK 705

Query: 714  PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
             G T+ ESFE+ V + LN ARD+AG  A+ +L + NN+K MV+AGSKGSFINI+QM+ACV
Sbjct: 706  HGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACV 765

Query: 774  GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
            GQQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLI
Sbjct: 766  GQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLI 825

Query: 834  DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDS 893
            DTAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDGMD+  IE Q +D+
Sbjct: 826  DTAVKTAETGYIQRRLVKALEDIMVHYDSTTRNSLGNVIQFVYGEDGMDASHIEKQAIDT 885

Query: 894  LKMKKSEFDKAFRFEMDEENWNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQKLE 945
            +    S F+K +R ++     NP+++L         E + DLK    L+ + D E ++L 
Sbjct: 886  IGGSDSAFEKRYRIDL----LNPDHLLDPSLLESGSEIVGDLK----LQVLLDEEYKQLV 937

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR+ L + +   G+ +WPLPVN++R++ NAQ+TF++D  +PSD+   +V  AV  LQ++
Sbjct: 938  EDRFFLRS-VFVDGEPNWPLPVNIRRIVQNAQQTFRIDHTKPSDLSIRDVYFAVKNLQDK 996

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
            L V+ G   +   AQ++A   F  L+RS  A++RV++E+RLT++AFEWV+  IE +FL+S
Sbjct: 997  LLVLRGNSEIIKNAQQDAVSLFCCLMRSRLATRRVIEEYRLTKQAFEWVLNNIEIQFLRS 1056

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
            +V PGEM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL               
Sbjct: 1057 IVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRL--------------- 1101

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
                        E+AK ++ A+E+TTL+SVT A+E++YDPDP  T+I ED E ++ ++ +
Sbjct: 1102 --------XXXXEKAKFIRSAIEHTTLKSVTVASEIYYDPDPRSTVIAEDEEIIQLHFSL 1153

Query: 1186 PDEDI--APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKL 1243
             D++   + ++ SPWLLR+EL+R  M DK L+M  V EKI + F +DL  I+++DNA+KL
Sbjct: 1154 LDDETEKSLDQQSPWLLRLELDRAAMNDKDLTMGQVGEKIKETFKNDLFVIWSEDNAEKL 1213

Query: 1244 ILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------------- 1284
            I+R R++    PK    +  AE+D  LKKIE+ ML  + LR                   
Sbjct: 1214 IIRCRVVR---PKSMDIETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPS 1270

Query: 1285 ----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELR 1328
                            GVNL  VM    VD++R  +N  I+I+EVLGIEA R AL  E+ 
Sbjct: 1271 ATGEYHKVPEWVLETDGVNLSEVMTVPGVDSKRIYTNSFIDIMEVLGIEAGRAALYKEVY 1330

Query: 1329 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1388
             VI+ DGSYVNYRH+A+L D MT +G L ++TRHG NR+ TG +MRCSFEETV+IL +A 
Sbjct: 1331 NVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSATGALMRCSFEETVEILFEAG 1390

Query: 1389 VFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMTPA 1447
              AE D  RGV+EN++LGQ+APIGTG   + +++E ++K   E ++    +G + G TP 
Sbjct: 1391 ACAEMDDCRGVSENVILGQMAPIGTGSFDVMIDEESLVKYMPEQKVTELEDGQDGGATPY 1450

Query: 1448 RSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGY 1505
             S  SG    +  +    +FSP L  S  +DA    +            G +PSSPG+
Sbjct: 1451 -SNESGLVNTEIDVKDELMFSP-LVDSGASDAMAGGFTAYGGGDYGGGFGEAPSSPGF 1506


>gi|418204400|gb|AFX61754.1| RNA polymerase I largest subunit, partial [Ascosphaera larvis]
          Length = 1627

 Score = 1516 bits (3925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 823/1657 (49%), Positives = 1098/1657 (66%), Gaps = 113/1657 (6%)

Query: 18   VQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDRKMKCETCTANMAE 75
            +QFG+LSPDEI++MSVV+I + ET   +R +P+  GL+DP+LGTIDR  KC TC   + +
Sbjct: 1    IQFGLLSPDEIKKMSVVKIVYPETMDDQRQRPREEGLNDPKLGTIDRAFKCATCEQGIMD 60

Query: 76   CPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLK 135
            CPGHFGH+ELA P+FHIGF+  +  ++ +VC NC KI AD  D K+ +AL+ R+PK R  
Sbjct: 61   CPGHFGHIELASPVFHIGFLTKIKKLLETVCINCGKIKADMTDSKYAEALRYRDPKRRFD 120

Query: 136  KILDACKNKTKCEGGDEI-DVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRK 194
             I   CK+K  CE    I D P  +    +    GGCG  QP++  EG+ ++  +K +  
Sbjct: 121  AIWRLCKDKLLCETTPIIQDDPFSNAPPQILYGHGGCGNPQPQIRREGLTLVGTWKPE-- 178

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            K+ DQ +   PV+R   +T +    V K IS  D +LLGL+ +YARP+WMI+ VLP+PPP
Sbjct: 179  KSVDQSESAPPVKR--VITPKEAREVFKNISSGDVRLLGLSNEYARPEWMIITVLPVPPP 236

Query: 255  PV-------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIA 301
            PV             R  DDLT++LA I+R N+N+ R + +G   H + EF  LLQ+H+A
Sbjct: 237  PVRPSVLVGGSGTNQRGEDDLTYKLAEIVRANQNVARCQVDGV-GHGLQEFEALLQYHVA 295

Query: 302  TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 361
            TY DN++ GQP+A Q+S RP+K+I  RLK KEGR+R NLMGKRVDFSARTVIT DP +++
Sbjct: 296  TYMDNDIAGQPKAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSL 355

Query: 362  DQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYL 421
            D++GVP SIA  LTY E VTPYNI +L  +V  GP+  PG   AKYIIR  G++L+L   
Sbjct: 356  DEVGVPVSIARTLTYTEVVTPYNISKLVAMVNNGPNIHPG---AKYIIRPTGEKLNLVGN 412

Query: 422  KKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP 480
            K  +    L+ G+KVERH+ DGD +LFNRQPSLHK S+M HR+++MPYSTFRLNLSVT+P
Sbjct: 413  KTPNPGRLLQYGFKVERHILDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTP 472

Query: 481  YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
            YNADFDGDEMN+HVPQS E+RAE+ EL +VP  IVSPQ N P+MGIVQDTL G  KI +R
Sbjct: 473  YNADFDGDEMNLHVPQSEESRAELKELALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRR 532

Query: 541  DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD 600
            DTF+ K+  MNI+MW  D+DG +PQP I+KPRP WTGKQ+ ++++P  +NL R     A 
Sbjct: 533  DTFLTKEHVMNIMMWVPDWDGVIPQPAIIKPRPRWTGKQIISMVLPSGLNLLRLDKDGAP 592

Query: 601  NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
              +      D+   I  GEL+ G   KKT+G + G +IH I+ E GPD    F   TQ +
Sbjct: 593  LAERFSPINDSGCFIHGGELMFGQFSKKTVGATGGGVIHTIFNEYGPDVCMSFFNGTQRV 652

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            VNYWLL N FSIGIGDTI DA T+  I + + + K  V+++   A   +L+P PG  + E
Sbjct: 653  VNYWLLHNGFSIGIGDTIPDANTVAKIEEAVRERKEEVEDITDDATRDALDPLPGMNIRE 712

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FE+KV++ LN ARD+AG+  +KSL + N+   M  +GSKGS INISQM A VGQQ+VEG
Sbjct: 713  TFESKVSRALNNARDDAGNVTEKSLKDCNHGVQMARSGSKGSTINISQMMAIVGQQSVEG 772

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+
Sbjct: 773  KRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTA 832

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQR+LVKA+E++MVKYDGTVRNSLGDV+QF+YGEDG+D   IE+Q +D +     +
Sbjct: 833  ETGYIQRKLVKALEEVMVKYDGTVRNSLGDVVQFIYGEDGLDGAHIENQRVDIITCSDEK 892

Query: 901  FDKAFRFE-MDEENWNPNYMLQ---EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIA 956
            F + FR + MD +   P  +L+   E  DD++  K L    D E ++L+ DR  L T + 
Sbjct: 893  FRQRFRVDFMDPDYTIPPDLLEHGKEIADDIEAQKYL----DEEWEQLQKDRNFLRT-VC 947

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
               +    LP+N++R++  A+ TF++     SD+HP EV+  V +L +RL VV G+D +S
Sbjct: 948  KEDEEMMQLPINVQRILETAKTTFRIREGTVSDLHPSEVIPQVRELLDRLVVVRGDDSIS 1007

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
             EAQ++ATL F   LRS  A +R++ E+ L + A + V+G IE+RF +++ +PGEM+G +
Sbjct: 1008 REAQESATLLFMCQLRSRLAFRRLVVEYSLNKLALQHVLGAIENRFARAIASPGEMVGVL 1067

Query: 1077 AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNST 1136
            AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVAK IKTPS++V+  P +   
Sbjct: 1068 AAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKNIKTPSMTVYQVPELAGN 1127

Query: 1137 KERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI--APEK 1194
            ++  K ++  +E+TTLRSV E  E++YDPD   T+IE D + V++Y+ +P ED+   PE+
Sbjct: 1128 QDAVKVLRSKVEHTTLRSVAEMIEIYYDPDIRNTVIEADKDMVETYFIIP-EDVQEKPEE 1186

Query: 1195 ISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEA 1254
             S WL+R+ L+   ++DK L++  VA++I   F++D+  +F+DDN+D+ ++RIR +    
Sbjct: 1187 QSQWLVRLVLSHIKLIDKGLTVQDVADRIKALFENDVNVMFSDDNSDQPVIRIRPL---- 1242

Query: 1255 PKGELNDESAED----DVFLKKIESNMLTEMALRGVN----------------------- 1287
             KG L+D+   D    D  LK  +++ML    LRGV+                       
Sbjct: 1243 -KGALDDDEEGDGNEMDHTLKIFQAHMLDHCTLRGVSGVERAFINEKTHARIMPDGSLSK 1301

Query: 1288 ------------------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
                              L  V+  + VDA RT SN  IEI+EV GIEA R ALL EL  
Sbjct: 1302 SAEDDQCKEWILETSGSALADVLTIDGVDATRTYSNQFIEILEVFGIEATRTALLRELTQ 1361

Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
            V++FDGSYVN+RHLA+L D MT RG LMA+TRHGINR+DTG +MRCSFEETV+ILL+AA 
Sbjct: 1362 VLAFDGSYVNHRHLALLIDIMTSRGFLMAVTRHGINRSDTGALMRCSFEETVEILLEAAA 1421

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARS 1449
            FAE D  RGV+EN++LGQ+AP GTG+  +YL+  ML   +     S   GL       +S
Sbjct: 1422 FAELDDCRGVSENLILGQMAPAGTGEFDVYLDQNMLMGVV-----STNAGLGMDAGDVKS 1476

Query: 1450 PV----SGTPYHDGMMSPGYLF----SPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPS 1501
             +    + TPY  G      +F     P+ + SP+   Q S       F+  + PG+   
Sbjct: 1477 SMLAEGAATPYDAGSPMQENMFVGMGDPDSKFSPIR--QVSGGETPQGFTDYAGPGFGGY 1534

Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSP-------TSPGYSPTSPTYSPSSPGYSPTSPAY 1554
            SPG + S  GYSP+SP  +  +            TSP    TSP +  SSPG+SPTSP++
Sbjct: 1535 SPGGARSPGGYSPSSPLSTSPTSPSYSPSSGYSPTSPAIGITSPRFM-SSPGFSPTSPSF 1593

Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1591
            +PTSP+YSPTSP Y+      SPTSP+YSPTSP  SP
Sbjct: 1594 APTSPAYSPTSPMYAAGG---SPTSPNYSPTSPGRSP 1627



 Score = 74.7 bits (182), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 47/63 (74%), Gaps = 4/63 (6%)

Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1665
            TSPA   TSP +  +SP +SPTSPS++PTSP+YSPTSP Y+      SPTSP+YSPTSP 
Sbjct: 1569 TSPAIGITSPRFM-SSPGFSPTSPSFAPTSPAYSPTSPMYAAGG---SPTSPNYSPTSPG 1624

Query: 1666 YSP 1668
             SP
Sbjct: 1625 RSP 1627



 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 46/60 (76%), Gaps = 5/60 (8%)

Query: 1634 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY----SPTSPSYSPTSPTYSP 1689
            TSP+   TSP +  +SP +SPTSPS++PTSPAYSPTSP Y    SPTSP+YSPTSP  SP
Sbjct: 1569 TSPAIGITSPRFM-SSPGFSPTSPSFAPTSPAYSPTSPMYAAGGSPTSPNYSPTSPGRSP 1627



 Score = 65.1 bits (157), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1666
             P +   SP  + +   YSP+SP  +  +      S  YSPTSP+   TSP +  +SP +
Sbjct: 1528 GPGFGGYSPGGARSPGGYSPSSPLSTSPTSPSYSPSSGYSPTSPAIGITSPRFM-SSPGF 1586

Query: 1667 SPTSPGYSPTSPSYSPTSPTY----SPTSPSYNPQSAKYSP 1703
            SPTSP ++PTSP+YSPTSP Y    SPTSP+Y+P S   SP
Sbjct: 1587 SPTSPSFAPTSPAYSPTSPMYAAGGSPTSPNYSPTSPGRSP 1627



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 57/95 (60%), Gaps = 5/95 (5%)

Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1673
             P +   SP  + +   YSP+SP  +  +      S  YSPTSP+   TSP +  +SPG+
Sbjct: 1528 GPGFGGYSPGGARSPGGYSPSSPLSTSPTSPSYSPSSGYSPTSPAIGITSPRFM-SSPGF 1586

Query: 1674 SPTSPSYSPTSPTYSPTSPSY----NPQSAKYSPS 1704
            SPTSPS++PTSP YSPTSP Y    +P S  YSP+
Sbjct: 1587 SPTSPSFAPTSPAYSPTSPMYAAGGSPTSPNYSPT 1621



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 8/65 (12%)

Query: 1710 SSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGG--NPDYSPSS 1767
            +SP +   SP   +SP +SPTS S++PTSP+YSP+SP Y+      AGG   +P+YSP+S
Sbjct: 1569 TSPAIGITSPRFMSSPGFSPTSPSFAPTSPAYSPTSPMYA------AGGSPTSPNYSPTS 1622

Query: 1768 PQYSP 1772
            P  SP
Sbjct: 1623 PGRSP 1627



 Score = 54.7 bits (130), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 61/121 (50%), Gaps = 26/121 (21%)

Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1680
             P +   SP  + +   YSP+SP  +  +      S  YSPTSPA   TSP +  +SP +
Sbjct: 1528 GPGFGGYSPGGARSPGGYSPSSPLSTSPTSPSYSPSSGYSPTSPAIGITSPRFM-SSPGF 1586

Query: 1681 SPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPY-----SPTSPNYSPTSSSYS 1735
            SPTSP+++PTSP+Y                    SP SP      SPTSPNYSPTS   S
Sbjct: 1587 SPTSPSFAPTSPAY--------------------SPTSPMYAAGGSPTSPNYSPTSPGRS 1626

Query: 1736 P 1736
            P
Sbjct: 1627 P 1627


>gi|260943858|ref|XP_002616227.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
 gi|238849876|gb|EEQ39340.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
          Length = 1402

 Score = 1516 bits (3924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 780/1413 (55%), Positives = 1002/1413 (70%), Gaps = 79/1413 (5%)

Query: 46   KPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSV 105
            +P+ GGL+DPRLG+IDR  KC+TC  +MAECPGHFGH+ELAKP+FHIGF+  +  +   V
Sbjct: 7    RPRDGGLNDPRLGSIDRNFKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECV 66

Query: 106  CFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLK 165
            C +C K+L D+ +    QA+KIR+PK R   + + CK K  CE     D+  ++GE  + 
Sbjct: 67   CMHCGKLLVDDTNPLMAQAIKIRDPKKRFNAVWNVCKTKMVCEA----DIINEEGE--VT 120

Query: 166  KNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRIS 225
              +GGCG  QP +  +G+K+   +K Q K  D+ EQ PE    ++ LT   +L V K IS
Sbjct: 121  SGRGGCGHTQPTVRRDGLKLWGTWK-QNKSFDESEQ-PE----RRLLTPSEILSVFKHIS 174

Query: 226  DEDCQLLGLNPKYARPDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNEN 275
             EDC  LG N  YARP+WM++ VLP+PPP            R  DDLT +LA II+ N N
Sbjct: 175  SEDCHRLGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARGEDDLTFKLADIIKANIN 234

Query: 276  LRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGR 335
            ++R E +G+P H+ISEF  LLQFH+ATY DN++ GQP+A Q++GRPIKSI +RLK KEGR
Sbjct: 235  VQRLEMDGSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGR 294

Query: 336  IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 395
            +RGNLMGKRVDFSARTVI+ DP +++DQ+GVP SIA  LTYPE VTPYNI RL E V  G
Sbjct: 295  LRGNLMGKRVDFSARTVISGDPNLDLDQVGVPLSIARTLTYPEIVTPYNIHRLTEYVRNG 354

Query: 396  PHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHK 455
            P+  PG   AKY+IRD G R+DLRY K++ D  L+ G+KVERHL D D VLFNRQPSLHK
Sbjct: 355  PNEHPG---AKYVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHK 411

Query: 456  MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 515
            MS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ ++  VP  IV
Sbjct: 412  MSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSQETRAELSQICAVPLQIV 471

Query: 516  SPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLW 575
            SPQSN+PVMGIVQDTL G RK+T RD FIE +  MN+L W  ++DG +P P I+KP+PLW
Sbjct: 472  SPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYEQVMNMLYWIPNWDGVIPPPAIIKPKPLW 531

Query: 576  TGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTG 635
            +GKQ+ ++ IPK I+L R      D+   +L+  D  + I  GE++ G + KKT+G + G
Sbjct: 532  SGKQILSMAIPKGIHLQRF-----DDGNDMLSPKDKGILIVDGEIIFGVVDKKTVGATGG 586

Query: 636  SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAK 695
             LIH +  E G     +     Q +VNYWLL N FSIGIGDTIAD  TM  +  TI +AK
Sbjct: 587  GLIHTVMREKGSQVCAQLFSSIQKVVNYWLLHNGFSIGIGDTIADKDTMRDVTTTIQEAK 646

Query: 696  NNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMV 755
              V+ +I  AQ   LEPEPG T+ ESFE+ V++VLN ARD AG SA+ +L + NN+K MV
Sbjct: 647  QKVQEIIMDAQQNRLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMNLKDLNNVKQMV 706

Query: 756  TAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRG 815
            T+GSKGSFINISQM+ACVGQQ VEGKRIPFGF DRTLPHFTKDDY PES+GFVENSYLRG
Sbjct: 707  TSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDYSPESKGFVENSYLRG 766

Query: 816  LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 875
            LTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLGD+IQF+
Sbjct: 767  LTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGDIIQFV 826

Query: 876  YGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQE-YIDDLKTIK--- 931
            YGEDG+D   +E Q++D++    ++F+K +R ++     +P+  + E  +D  K IK   
Sbjct: 827  YGEDGIDGTAVEKQSVDTIPGSDAKFEKRYRIDL----LDPSKSISESLLDSGKEIKGDV 882

Query: 932  ELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMH 991
            +L+ V D+E ++L  DR  L      +GD +WPLPVNL+R+I NAQ+ F    +R SD+ 
Sbjct: 883  KLQKVLDSEYEQLLKDRKYLREVCFPNGDFNWPLPVNLRRIIQNAQQIFHSGRQRASDLK 942

Query: 992  PMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAF 1051
              E+VE V  L  +L V+ G+  L+ EAQ++ATL F  L+RS  A++R+++E +L+R +F
Sbjct: 943  LDEIVEGVKALCSKLLVIRGKSRLAKEAQEDATLLFQCLVRSRLAARRIIEEFKLSRISF 1002

Query: 1052 EWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLR 1111
            EWV GEIE++F +S+V PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+
Sbjct: 1003 EWVCGEIETQFQKSIVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLK 1062

Query: 1112 EIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTI 1171
            EI+NVAK IKTP+L+V+L P + S  E+AK VQ A+E+TTL++VT ATE++YDPDP  T+
Sbjct: 1063 EILNVAKNIKTPALTVYLDPEIASDIEKAKVVQSAIEHTTLKNVTSATEIFYDPDPRSTV 1122

Query: 1172 IEEDVEFVKSYYEMPDEDIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDD 1229
            IEED + V++Y+ +PDE +    +  SPWLLR+EL+R  M+DK+L+MA VAEKI+Q F +
Sbjct: 1123 IEEDYDTVEAYFAIPDEKVEETIDNQSPWLLRLELDRAKMLDKQLTMAQVAEKISQNFGE 1182

Query: 1230 DLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR----- 1284
            DL  I++DD ADKLI+R R++ D  PK E   +  ED + LK++E++ML  ++LR     
Sbjct: 1183 DLFVIWSDDTADKLIIRCRVIRD--PKLEEEGDHEEDQI-LKRVEAHMLESISLRGIPGI 1239

Query: 1285 ------------------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVL 1314
                                          GVNL  V+    VD+ RT SN+ IEI+ VL
Sbjct: 1240 TRVFMMQHKMSTPDESGEFSQKQEWVLETDGVNLAEVIAVPGVDSSRTYSNNFIEILSVL 1299

Query: 1315 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
            GIEA R AL  E+  VI+FDGSYVNYRH+A+L D MT RGHLMA TRHGINR +TG +MR
Sbjct: 1300 GIEATRSALYKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLMARTRHGINRAETGALMR 1359

Query: 1375 CSFEETVDILLDAAVFAES-DYLRGVTENIMLG 1406
            CSF               S D  RG++EN++ G
Sbjct: 1360 CSFRRNGRDSFGCWCSCPSWDDCRGISENVIFG 1392


>gi|403365508|gb|EJY82539.1| hypothetical protein OXYTRI_19848 [Oxytricha trifallax]
          Length = 1782

 Score = 1515 bits (3922), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 843/1827 (46%), Positives = 1159/1827 (63%), Gaps = 139/1827 (7%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRK 63
            F  S  E+ KVR VQFG+L+PDE+R+MSVV I +  T  +RG P   G++DPR+GT+D++
Sbjct: 9    FAQSYVELHKVRAVQFGLLNPDEVRKMSVVNINNERTYDDRGIPNFSGINDPRMGTMDKE 68

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
            ++C TC  + A+CPGHFGH+ELAKP++H G ++ +  ++R VCF CSK+LA+++  K ++
Sbjct: 69   LRCFTCKGSQADCPGHFGHIELAKPVYHAGLLEFIRKVLRCVCFYCSKLLAEKE--KLEE 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
              +I+    RL + L  C     C+                      CG +QPK +  G+
Sbjct: 127  LRRIKTSSARLARALKLCDGIRLCKE---------------------CGHKQPKFSKTGL 165

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
            K+  +Y       DDQ  +    +RKQ L  +    V +RI +E C L+G  PK +RP+ 
Sbjct: 166  KIQVDYM------DDQ--IDAGRDRKQFLQPDEAHKVFERIDEESCTLMGFQPKISRPEN 217

Query: 244  MILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            MI++ L + PPPVRPS          DDLT+    I++ N  L+ Q + GA    I+   
Sbjct: 218  MIIKNLAVAPPPVRPSVSMGNTMRSEDDLTYCYIKILQTNIALQTQIQKGANLTTINVLR 277

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
              LQ+++AT  DNE+ GQP    +SG+P+K+I SRL+ KEGR+RGNLMGKRVDFSARTVI
Sbjct: 278  DSLQYYVATVMDNEIQGQPTQKHKSGKPLKAIRSRLRGKEGRLRGNLMGKRVDFSARTVI 337

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            TPDP + +DQLGVP  IALNLT PETVT  NI+ ++ LV+ GP   PG   AKYIIR D 
Sbjct: 338  TPDPILRLDQLGVPQQIALNLTVPETVTAENIDEMRYLVQNGPTQWPG---AKYIIRHDE 394

Query: 414  QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
            +++DL  LK  SD H+E G+KVERHL + D+V+FNRQPSLHKMS+MGHR+K++P+STFRL
Sbjct: 395  RQIDLSQLKNRSDLHIEPGFKVERHLRNDDYVIFNRQPSLHKMSLMGHRVKVLPFSTFRL 454

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NLSVT+PYNADFDGDEMNMHVPQS+ET AEV E+M VP  IVSPQSN+PVMGIVQD+LLG
Sbjct: 455  NLSVTTPYNADFDGDEMNMHVPQSYETMAEVKEIMAVPNQIVSPQSNKPVMGIVQDSLLG 514

Query: 534  CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
                T +DTFIEK++ M +LMW    D K+P P ILKP+PLWTGKQ+F+LIIP  IN+ +
Sbjct: 515  VMLFTLKDTFIEKELVMQLLMWINYEDDKLPPPAILKPKPLWTGKQIFSLIIP-DINIQK 573

Query: 594  TAAWHADND-KGIL--TAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
                    + K ++  +AGD  + + KGELL G L K T+G+S+G +IHVIW+E GP   
Sbjct: 574  VGERQKKGEPKNLIWDSAGDNNILMRKGELLCGNLTKSTIGSSSGGMIHVIWKEKGPYVT 633

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F+ +TQ ++N WL Q+ F++G+ D IA  + ++ I +++   K  V+ + ++AQ   L
Sbjct: 634  RDFMSNTQLVINNWLHQHGFTVGVQDIIAKKEIVQKIRESMVIFKKKVQQITQKAQMGKL 693

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            + +PG+ MM+SFE  VNQ LN ARD+ G+ A   L   N LKAMV AGSKGS +NISQ+ 
Sbjct: 694  KTQPGKGMMDSFEASVNQCLNKARDDCGNMALADLQSWNRLKAMVYAGSKGSNLNISQIM 753

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQNVEGKRIPFGF  R+LPHF+KDDYGPES+GFVEN YL GLTPQEFFFHAMGGRE
Sbjct: 754  ACVGQQNVEGKRIPFGFHRRSLPHFSKDDYGPESKGFVENCYLNGLTPQEFFFHAMGGRE 813

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+KA+ED+MVKYDGTVR S   +IQFLYGEDGM    IE  +
Sbjct: 814  GLIDTAVKTAETGYIQRRLIKALEDVMVKYDGTVRTSKEQIIQFLYGEDGMAGEHIEDLS 873

Query: 891  LDSLKMKKSEFDKAFRFEMD-EENWNPNYM---LQEYIDDLKTIKELRD-----VFDAEV 941
            +  LKMK ++      F    +E+   N +   L +++D+    + ++D         E 
Sbjct: 874  IPLLKMKNTDVQTKHNFLYKPKESMTDNELEQHLAKFMDNDIAHQIIQDPHICLQLKQEY 933

Query: 942  QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
             ++  DR  L   I  S + +  L VN+ R+IWNA++ F + P + S++HP  V+  +  
Sbjct: 934  NQILKDRDDLRFSILKSQEDAVHLSVNVPRIIWNAKEMFSIRPLQKSNIHPSYVLGKLQT 993

Query: 1002 LQERLKVVPG----EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGE 1057
            L + L  +PG     DPL +EA +++T  F I LRS   +K V+++ RL++E+F+W++GE
Sbjct: 994  LMDELAPIPGVWIKNDPLIIEANRDSTWLFKIYLRSLLNTKAVIQQERLSKESFDWILGE 1053

Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
            I+SRF Q+LV PGEM+G + AQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVA
Sbjct: 1054 IKSRFEQALVNPGEMVGSIGAQSMGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVA 1113

Query: 1118 KKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVE 1177
            K IKTPS+ ++L+       + A      +E+TTL  V +++ ++YDPDP  TI++ED  
Sbjct: 1114 KNIKTPSMKIYLEDENKQDNKTATMFGGRIEHTTLSHVVKSSAIYYDPDPERTIVKEDEA 1173

Query: 1178 FVKSYYEMPDEDIAP-EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
             +  Y ++P  +++   +++ WLLR EL+ + M  K L+M+ + +KI + F+D +  + +
Sbjct: 1174 LLALYRDVPTMEMSEGRRMTSWLLRFELDSDKMQFKDLTMSMIEQKIQENFNDQINVMHS 1233

Query: 1237 DDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRG----------- 1285
            DDN +KLILR+R+ + E  +     +     +FLK  +  +  E+AL+G           
Sbjct: 1234 DDNDEKLILRLRVNDIEDDE-----DDTTVCMFLKDFQDRLFNELALKGLHEIGKVTFTK 1288

Query: 1286 --------------------------VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                      V L  V+  E ++ RRT SN +IEI++VLGIEAV
Sbjct: 1289 YNDEVFDPETGEAKQDKDCWLIETDGVALQKVLGQEGINYRRTVSNDIIEILKVLGIEAV 1348

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R +L++ELR V+S  G YVNYRHL+ LCD MT RG L AITRHGINR D+GP+ +CSFEE
Sbjct: 1349 RMSLINELRFVLSSYGIYVNYRHLSTLCDVMTQRGILTAITRHGINRVDSGPLRKCSFEE 1408

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEG 1439
            TV+ILL+AAVFAE+D+L+G+TENI++GQLAP GTG   + ++ E+L +  +++     + 
Sbjct: 1409 TVEILLEAAVFAETDHLKGITENIIMGQLAPYGTGSFEITIDPEVLNSYAQVKPED--DD 1466

Query: 1440 LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMA-FSPTSSPGY 1498
            L+ G TP         Y++ +    Y+ +     +P   +  +P  GGM+ +S   +P Y
Sbjct: 1467 LQAGNTPMHLDQG---YNEFVGDNEYVIN-----TPTQGSTPAPNYGGMSEYSSFGTPNY 1518

Query: 1499 SPS-SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGY-SPTSPTYS-PSSPGYSPTSPAYS 1555
                SPG +  +  Y  T+P Y   SP  + TSP Y +  SP Y+   SP Y+       
Sbjct: 1519 QGGFSPGPNQMASPYG-TTPAY--MSPYGAGTSPAYRTGQSPIYNIHQSPIYNANDNNM- 1574

Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
            P SP+ +  SP YSPT+ +    SP Y+P TSP Y          SP YS  +   S  S
Sbjct: 1575 PQSPNQNAYSPIYSPTNQTRG-MSPGYNPSTSPGYYNQPSGVGGPSPLYS-NAIGGSYQS 1632

Query: 1615 PAYSPTSPA-YSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPAYSPTSPG 1672
            P YSPTS   +   S SYSPT+ +YS +SP YSPT+P+Y +  SPSYSPTS   S TS  
Sbjct: 1633 PGYSPTSGGGHMSGSASYSPTNQNYS-SSPHYSPTTPNYQNHYSPSYSPTSNVMSGTS-- 1689

Query: 1673 YSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSS 1732
                  S SP    +  ++  Y   S   S +   SP     + +S Y P SP Y+   S
Sbjct: 1690 ----QISASPRYQIHQSSTSRYAGDSGHMSNA---SPGGMYNASSSIYIPASPAYNQNVS 1742

Query: 1733 SYSPTSPSYSPSSPTYSPSSP-YNAGG 1758
            S S  S   +P++   S + P YNAGG
Sbjct: 1743 SPSYNSSGSAPNNNNRSTTGPTYNAGG 1769



 Score = 78.2 bits (191), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 89/238 (37%), Positives = 121/238 (50%), Gaps = 26/238 (10%)

Query: 1561 YSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPAYSPTSPAYS 1618
            Y   +P+   T +P+Y   S   S  +P+Y    SP  +  +  Y  T+PAY   SP  +
Sbjct: 1489 YVINTPTQGSTPAPNYGGMSEYSSFGTPNYQGGFSPGPNQMASPYG-TTPAY--MSPYGA 1545

Query: 1619 PTSPAY-SPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
             TSPAY +  SP Y+   SP Y+    +  P SP+ +  SP YSPT+      SPGY+P+
Sbjct: 1546 GTSPAYRTGQSPIYNIHQSPIYNANDNNM-PQSPNQNAYSPIYSPTNQTRG-MSPGYNPS 1603

Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPN-YSPTSSSYS 1735
                  TSP Y      YN  S    PS  YS +      +  YSPTS   +   S+SYS
Sbjct: 1604 ------TSPGY------YNQPSGVGGPSPLYSNAIGGSYQSPGYSPTSGGGHMSGSASYS 1651

Query: 1736 PTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYS--PSSTSQY 1791
            PT+ +YS SSP YSP++P      +P YSP+S   S ++  S S P Y    SSTS+Y
Sbjct: 1652 PTNQNYS-SSPHYSPTTPNYQNHYSPSYSPTSNVMSGTSQISAS-PRYQIHQSSTSRY 1707



 Score = 67.0 bits (162), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 73/225 (32%), Positives = 103/225 (45%), Gaps = 33/225 (14%)

Query: 1589 YSPTSPSYSPT-SPSYSPTSPAYSPTSPAYSPT-SPAYSPTSPSYSPTSPSYSPTSPSYS 1646
            Y   +P+   T +P+Y   S   S  +P Y    SP  +  +  Y  T+P+Y   SP  +
Sbjct: 1489 YVINTPTQGSTPAPNYGGMSEYSSFGTPNYQGGFSPGPNQMASPYG-TTPAY--MSPYGA 1545

Query: 1647 PTSPSY-SPTSPSYS-PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
             TSP+Y +  SP Y+   SP Y+       P SP+ +  SP YSPT+     Q+   SP 
Sbjct: 1546 GTSPAYRTGQSPIYNIHQSPIYNANDNNM-PQSPNQNAYSPIYSPTN-----QTRGMSP- 1598

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPS------SPTYSPSSPYNAGG 1758
              Y+PS            TSP Y    S     SP YS +      SP YSP+S      
Sbjct: 1599 -GYNPS------------TSPGYYNQPSGVGGPSPLYSNAIGGSYQSPGYSPTSGGGHMS 1645

Query: 1759 GNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTK 1803
            G+  YSP++  YS S  YSP+ P Y    +  Y+P +N    T++
Sbjct: 1646 GSASYSPTNQNYSSSPHYSPTTPNYQNHYSPSYSPTSNVMSGTSQ 1690


>gi|520513|gb|AAA50227.1| RNA polymerase II, largest subunit, partial [Helobdella stagnalis]
          Length = 1337

 Score = 1509 bits (3907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 763/1355 (56%), Positives = 974/1355 (71%), Gaps = 80/1355 (5%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKK----I 137
            H+EL+KP+FH+ F   ++ I+R VC+ CSK+L D +  K K  L     KN++K+    +
Sbjct: 1    HIELSKPVFHVPFFTKIIKILRCVCYYCSKLLIDPNHPKVKDILN--KTKNQMKRRQGFV 58

Query: 138  LDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKND 197
             D CK KT C GG EID    D +    K + GCG  QPK+    +++ AE+K   + ND
Sbjct: 59   YDLCKVKTSC-GGGEIDKKDDDNDPDNIKVQVGCGRHQPKIRRNLLELTAEWK---QIND 114

Query: 198  DQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP--- 254
            D +      E+K  LTAERVL + K I+DE C +LG++PKYARPDW+I  +LP+PP    
Sbjct: 115  DNQ------EKKMILTAERVLEIFKAITDETCTILGMDPKYARPDWLIATMLPVPPLPVR 168

Query: 255  -------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNE 307
                     +  DDLTH+LA II+ N  L+R E NGA AHI++E  ++LQFH+AT  DNE
Sbjct: 169  PAVVMFGSAKNQDDLTHKLADIIKINNQLKRNEMNGAAAHILAEDTKMLQFHVATMIDNE 228

Query: 308  LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 367
            +PG PRATQ+SGRP+KSI  RLK KEGRIRGNLMGKRVDFSARTVITPDP + IDQ+GVP
Sbjct: 229  MPGLPRATQKSGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVITPDPMLRIDQVGVP 288

Query: 368  WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 427
             SIA NLT+PE VTP+NIERL ELV+ G +  PG   AK+I+R+ G R+DLRY  KS+D 
Sbjct: 289  RSIAQNLTFPEIVTPFNIERLTELVKRGANQYPG---AKFILRETGDRIDLRYHPKSTDL 345

Query: 428  HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDG 487
            HL+ GY+VERH+ D D+V+FNRQP+LHKMS+M HR+KI+P+STFRLNLSVT+PYNADFDG
Sbjct: 346  HLQFGYRVERHMQDNDYVIFNRQPTLHKMSMMCHRVKILPWSTFRLNLSVTTPYNADFDG 405

Query: 488  DEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
            DEMN+H+ QS ETRAE+ +L  V + I++PQ+NRPVMGIVQD+L    K+T+RDTFI KD
Sbjct: 406  DEMNLHLAQSLETRAEISQLASVKRMIITPQANRPVMGIVQDSLTAVNKMTRRDTFITKD 465

Query: 548  VFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKG-- 604
              MNILM+   + GK+PQP ILKPR LWTGKQ+F++IIP +IN+ RT + H D+ D+G  
Sbjct: 466  EIMNILMYLPGWAGKLPQPAILKPRALWTGKQLFSIIIPGRINVIRTHSTHPDDEDRGPH 525

Query: 605  -ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
              ++ GDT V +E G+LLSG LCKK+LG S+GSL H+I  E+G DA   F  + Q + N+
Sbjct: 526  KWISPGDTKVLVEDGKLLSGILCKKSLGASSGSLQHIIHHELGSDATADFYAYIQMVTNH 585

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            WLL    +IGI DTIADAKT   I   I KAK++V  +I++A +  LEP PG T+ ++FE
Sbjct: 586  WLLVTGHTIGIADTIADAKTYSDIQTAIKKAKSDVVEVIEKAHNDELEPMPGNTLRQTFE 645

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
            N+VN++LN ARD+ GS AQKSLSE NN K+MV AGSKG+ INISQ+ ACVGQQNVEGKRI
Sbjct: 646  NQVNRILNDARDKTGSLAQKSLSEFNNFKSMVVAGSKGNKINISQVIACVGQQNVEGKRI 705

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
            PFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETG
Sbjct: 706  PFGFRQRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETG 765

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRRL+KAME +MVKYDGTVRN +  +IQ  YGEDG+   W+E Q L SLK     F+ 
Sbjct: 766  YIQRRLIKAMESVMVKYDGTVRNQIEQLIQLRYGEDGLAGEWVEFQNLPSLKPSNKAFEA 825

Query: 904  AFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
             F+F+   E    NY+ ++ +  L     +    ++E ++L  DR  +  +I  SGDS  
Sbjct: 826  GFKFDPTNEKHLKNYLDEDILKSLNGDANVIAEVESEYKQLLEDRTAI-RQIFPSGDSKI 884

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNA 1023
             LP NL+RLIWNAQK F++  R+PS++HP++++E V +L ++  +V GED LS  A  NA
Sbjct: 885  VLPCNLQRLIWNAQKIFRIHTRKPSNLHPVKIIEDVRELSKKFMIVKGEDRLSKTANTNA 944

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGE 1083
            TL  NIL+RST  SKRV++E  L+ EAFEW++GEIES+F+Q+ V PGEM+G +AAQS+GE
Sbjct: 945  TLLMNILVRSTLCSKRVIEEFHLSTEAFEWLMGEIESKFIQARVQPGEMVGALAAQSLGE 1004

Query: 1084 PATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNV 1143
            PATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+KK + PSL+V L        E+AK+V
Sbjct: 1005 PATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKKPRAPSLTVILIGQPARDAEKAKDV 1064

Query: 1144 QCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIE 1203
             C LE+TTLR VTE T ++YDPDPM T+IEED E+V  YY+MPD DI+  ++SPWLLR+E
Sbjct: 1065 LCQLEHTTLRKVTENTAIYYDPDPMHTLIEEDQEWVYIYYDMPDVDIS--RLSPWLLRVE 1122

Query: 1204 LNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDES 1263
            L+R+ M DKKL+M  ++EKI   F DDL CIFNDDNA+KL+LR+R+M+++  K + + E 
Sbjct: 1123 LDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRVRLMSNQDGKQDQDTEE 1182

Query: 1264 AE----DDVFLKKIESNMLTEMALRGVNLLA----------------------------- 1290
                  DD FLK IESNMLT+M L+G+  +A                             
Sbjct: 1183 QIDKMPDDTFLKHIESNMLTDMTLQGITSIAKVYMQQPTTDDKKRIIIDEKGEFKALQDW 1242

Query: 1291 -----------VMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVN 1339
                       V+  E+VD  +T SN ++E+ EVLGIEAVR+++  E+  VISFDGSYVN
Sbjct: 1243 ILETDGTALRRVLSVENVDPVKTVSNDIVEVFEVLGIEAVRKSIEREMNNVISFDGSYVN 1302

Query: 1340 YRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
            YRHLA+LCD MT +GHLMAITRHGINR +TG + R
Sbjct: 1303 YRHLALLCDVMTAKGHLMAITRHGINRQETGVLAR 1337


>gi|256082852|ref|XP_002577666.1| DNA-directed RNA polymerase II largest subunit [Schistosoma mansoni]
          Length = 1785

 Score = 1507 bits (3902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 849/1790 (47%), Positives = 1134/1790 (63%), Gaps = 142/1790 (7%)

Query: 99   LSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNR--LKKILDACKNKTKCEGGDEIDVP 156
            + ++R VCF CSKIL D    + ++ L+     NR  +  + + CK +++C   D+    
Sbjct: 1    MKVLRCVCFYCSKILVDVQSSRIQEILRKTKGDNRRRMSFMYEECKTRSECISNDDQVQS 60

Query: 157  GQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAER 216
              D     K  + GCG  QP+    G+++ AE+K   K N++ +      ERK  LTAER
Sbjct: 61   ENDVSLSSKVKRSGCGRYQPRFRRNGLELTAEWK---KVNEESQ------ERKINLTAER 111

Query: 217  VLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQL 266
            VL V KR+SDEDC  LG +P+YARPDWMI  VLP+PP  VRP+          DDLTH+L
Sbjct: 112  VLEVFKRMSDEDCLSLGFDPRYARPDWMIATVLPVPPLCVRPAVVMYGATRNQDDLTHKL 171

Query: 267  AMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC 326
            A II+ N  LRR E+NGA AHII+E  ++LQFH+ T  DNE+PG P+A Q+SGRP+KSI 
Sbjct: 172  ADIIKANNQLRRDEQNGAAAHIIAEDIKMLQFHVTTMVDNEVPGLPKAIQKSGRPLKSIK 231

Query: 327  SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE 386
             RLK K GRIRGNLMGKRVDFSARTVIT DP +N+DQ+GVP +IA NLTYPE VT +NI+
Sbjct: 232  QRLKGKAGRIRGNLMGKRVDFSARTVITADPNLNLDQVGVPRTIAQNLTYPEIVTQFNID 291

Query: 387  RLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVL 446
             L++LV+ G   P    GAK+I+R++G R+DLRY  K SD  L++GY VERH+ + DFV+
Sbjct: 292  HLQKLVQNGTLYP----GAKFIVRENGDRIDLRYHPKVSDLTLQVGYIVERHMLNDDFVI 347

Query: 447  FNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLE 506
            FNRQP+LHKMS+M HR+K++P+STFRLNLSVTSPYNADFDGDEMN+H+PQS ET+AE+ +
Sbjct: 348  FNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVTSPYNADFDGDEMNLHLPQSVETKAEISQ 407

Query: 507  LMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQP 566
            L  V + +++PQ+N+PVMGIVQDTL    K+T+RD F+ +   MN+LM+   ++G++P+P
Sbjct: 408  LARVSRLVITPQANKPVMGIVQDTLTAVNKMTQRDVFLNRSEMMNLLMYLPTWNGRMPKP 467

Query: 567  TILKPRPLWTGKQVFNLIIPKQINLFRTAAWH-ADNDKG---ILTAGDTLVRIEKGELLS 622
             I KP+ LWTGKQ+F+L+IP ++N  RT + H  + D G    ++ GDT V ++ G+L+S
Sbjct: 468  AIYKPQRLWTGKQLFSLVIPGRVNCIRTHSTHPEEEDIGPYKWISPGDTKVIVDDGDLIS 527

Query: 623  GTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAK 682
            G LCKKTLG+  GSLIH++  E   D    F  + Q +VN WLL    +IGI DT+ D  
Sbjct: 528  GILCKKTLGSGAGSLIHIVALEHHHDQVNMFFNNIQTVVNNWLLIEGHTIGIADTLYDQA 587

Query: 683  TMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQ 742
            T   I+ TI+KAK+ V  +I QA +  L+P PG T+ ++FEN VN++LN ARD+ GS AQ
Sbjct: 588  TRRQISGTITKAKDAVFEIIDQAHNYDLQPTPGNTLRQTFENSVNKILNDARDKTGSCAQ 647

Query: 743  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGP 802
            +SLS+ NN   MV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF +DDYGP
Sbjct: 648  RSLSKYNNFNIMVVAGSKGSRINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIQDDYGP 707

Query: 803  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 862
            ESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +M+KYDG
Sbjct: 708  ESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMIKYDG 767

Query: 863  TVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQE 922
            TVRN +  +IQ  YGEDG+D+  +E Q L + K   + F+  FRF++  E      M ++
Sbjct: 768  TVRNQINQLIQLRYGEDGLDATHVEFQRLPTFKPSNAVFEHGFRFDIGNERVLRRCMPED 827

Query: 923  YIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKV 982
             +  L T  + +   ++E  +L +DR  L + I  + D S  LP N+ RL+ NAQK F++
Sbjct: 828  VVRSLATDSQTQSELESEWLQLCSDREILRSVIKKT-DDSVVLPCNINRLVMNAQKIFEI 886

Query: 983  DPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLK 1042
            DP   +++HP +VVE V +  +RL VVPG+D LS EA  NATL  + L+R++  +K+V+ 
Sbjct: 887  DPLSKTNIHPRQVVEMVRETCKRLIVVPGDDRLSKEANANATLLLSSLIRASLCAKKVII 946

Query: 1043 EHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKN 1102
            ++RL+ EA +WV+GE+ +RF Q+ + PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKN
Sbjct: 947  DYRLSYEALDWVLGEVRARFQQAHIHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKN 1006

Query: 1103 VTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVW 1162
            VTLGVPRL+EIINV+K+ KTPS+++FL        ER K+V   LE+TTLR +  +T ++
Sbjct: 1007 VTLGVPRLKEIINVSKRPKTPSMTIFLTGQAARDAERTKDVVARLEHTTLRKLVNSTYIY 1066

Query: 1163 YDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEK 1222
            YDPDP  T +EED E+V +YYE+PD D+    IS W+LRIE  R+ M  KKLSM  +A+K
Sbjct: 1067 YDPDPQNTAVEEDREWVSTYYELPDFDV--NAISSWMLRIEFTRKGMTGKKLSMEQIADK 1124

Query: 1223 INQEFDDDLTCIFNDDNADKLILRIRIMNDEAPK----GELNDESAEDDVFLKKIESNML 1278
            I + F +DL C   DDN  KL++RIRIMN +  K     +   +  EDD FL+ IE+N+L
Sbjct: 1125 ITRAFGNDLICHIPDDNL-KLVMRIRIMNSDLEKDFKDADTTSDKMEDDTFLRFIEANLL 1183

Query: 1279 TEMALRGV----------------------------------------NLLAVMCHEDVD 1298
            T++ L+G+                                         L+ V+   DVD
Sbjct: 1184 TDITLQGIPQITKVYMHLPKTQDKKRVVIKDDGSFDTVAEWMLETDGTCLMRVLAERDVD 1243

Query: 1299 ARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMA 1358
              RT SN ++EI E LGIEAVR+A+  E+  VISFDGSYVNYRHLA+LCD MT +GHLMA
Sbjct: 1244 PVRTVSNDIVEIFEALGIEAVRKAIECEMHHVISFDGSYVNYRHLALLCDIMTVKGHLMA 1303

Query: 1359 ITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSL 1418
            ITRHG+NR DTG + RCSFEETVDIL++AA+ +E D + GV+E IMLGQLA IGTG   L
Sbjct: 1304 ITRHGLNRLDTGALARCSFEETVDILMEAAIHSECDPMAGVSETIMLGQLARIGTGCFDL 1363

Query: 1419 YLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLR- 1472
             L+    + A  + L   + G+     P   PV G     TP+ +     G + SP+ R 
Sbjct: 1364 LLDSAKCQEAQPIPLGGVL-GMGLFNAPDGIPVLGDSGYHTPWDNAHSPVGSVDSPSYRG 1422

Query: 1473 -LSPVT---DAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSP-GYSPTS-PGYS-PTSPG 1525
             L   T   +A FSP    M +  + SPG SP     SP +P  +SP +  G+S P S  
Sbjct: 1423 GLGGATAPHNAMFSP---AMRYDSSLSPGRSPQLD--SPRTPEAFSPAAYVGFSSPMSFM 1477

Query: 1526 YSPTSPGYSPT---------------------------SPTYSPS---SPGYSPTSPAYS 1555
             +P +   SP                            SP + PS   +   S  S +  
Sbjct: 1478 GTPQTELGSPGSSPGHSGSLSSGSFGYGGPGSLRADIFSPIHKPSYAGTGSSSSFSASGD 1537

Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
              SP++S    SY P S  Y+  SP +   S     +S S  P+S S    + +YSP SP
Sbjct: 1538 SNSPTFS-LQQSYEPMSVGYTQRSPHHPSFSGYGMISSGSLGPSSDSPDSINYSYSPNSP 1596

Query: 1616 AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSP 1675
               PT    S  S  +S         +P  SP+SPS   ++ S S + P++ P S   SP
Sbjct: 1597 M--PTGGG-SSMSRDFSGWGVLPGSETPGVSPSSPSPGMSASSLSGSRPSFYPNSQPASP 1653

Query: 1676 TSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA--------SPYS-PTSPN 1726
             S + SP++P YSP + + +     YSP +  +PSSP  +P+        SP S PT+PN
Sbjct: 1654 LSFNASPSAPRYSPPTLAGSSSVESYSPQMT-TPSSPGGAPSGTLGGPSNSPLSYPTTPN 1712

Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGY 1776
            Y P S   S  +   S S   YS +    +  G   YSPS+  ++PS+ Y
Sbjct: 1713 Y-PMSHGLSTGTGLGSSSLLGYSGTGFSGSTLGTSAYSPST-FHTPSSHY 1760


>gi|520503|gb|AAC83397.1| RNA polymerase II, largest subunit, partial [Artemia salina]
          Length = 1341

 Score = 1506 bits (3900), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 753/1360 (55%), Positives = 968/1360 (71%), Gaps = 86/1360 (6%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA-LKIR-NPKNRLKKILD 139
            H+ELAKP+FH+GF+   + I+R VCF CSK+L   ++ K K+  LK +  P+ RL  I D
Sbjct: 1    HIELAKPVFHVGFLTKTIKIIRCVCFYCSKLLVSPNNPKIKEVILKTKGQPRKRLAAIYD 60

Query: 140  ACKNKTKCEGGDEIDVPGQDGEEPLKKNK----GGCGAQQPKLTIEGMKMIAEYKAQRKK 195
             CK K  CEGGDE+D+     +  L + K    GGCG  QPK+   G+ + AE+K     
Sbjct: 61   LCKGKNICEGGDEMDMARDQEDLSLSQAKKVGHGGCGRYQPKIRRIGLDLTAEWK---HV 117

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
            N+D +      ERK TLTAERV  + K ISDE+C +LG++PK+ARPDWMIL V+P+PP  
Sbjct: 118  NEDSQ------ERKLTLTAERVHEIFKHISDEECHILGMDPKFARPDWMILTVIPVPPLN 171

Query: 256  VRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
            VRP+          DDLT++L  II+ N  L R E +GA AHII E  ++LQFH+AT  D
Sbjct: 172  VRPTVIMFGSAKGHDDLTYKLGDIIKANNELIRNEESGAAAHIIHENIRMLQFHVATMVD 231

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            N++PG  RA Q+SGRP+KSI SRLK KEGRIRGNLMGKRVDFSARTVITPDP + IDQ+G
Sbjct: 232  NDMPGLQRAMQKSGRPVKSIKSRLKGKEGRIRGNLMGKRVDFSARTVITPDPNLRIDQVG 291

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP SIA NLT+PE VTP N  +L ELV+ G    PG   AKYIIR++G+R+DLRY  K++
Sbjct: 292  VPRSIAQNLTFPEMVTPLNHAKLTELVQRGNSQYPG---AKYIIRENGERIDLRYHPKTT 348

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
            D HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++++P+STFR+NLS T+PYNADF
Sbjct: 349  DLHLQFGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVRVLPWSTFRMNLSCTTPYNADF 408

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HV QS ETRAE+  + + P+ I++PQ+NRPVMGIVQDTL   RK+TKRD F+E
Sbjct: 409  DGDEMNLHVAQSLETRAELENIHITPRQIITPQANRPVMGIVQDTLCAVRKMTKRDVFLE 468

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKG 604
            K+  M +LM+   +DGK+PQP ILKP+PLWTGKQ+F LIIP ++N+ +T + H D+ D G
Sbjct: 469  KEQMMTLLMYLPTWDGKLPQPAILKPKPLWTGKQLFTLIIPGKVNMMKTHSTHPDDEDDG 528

Query: 605  ---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
                ++ GDT V +E GEL+ G LCKKTLG S GS++H+I+ E+G D   KF G+ Q +V
Sbjct: 529  PYKWISPGDTKVMVEHGELIMGILCKKTLGASAGSILHIIFLELGHDICGKFYGNIQTVV 588

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            N WLL    SIGIGDTIAD +T  +I  TI KAK +V ++I +A +  LEP PG T+ ++
Sbjct: 589  NNWLLYEGHSIGIGDTIADPQTYNSIQTTIKKAKEDVIDVITKAHNNELEPTPGNTLRQT 648

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FEN+VN++LN ARD+ G SA+ SL+E NNLKAMV +GSKGS INISQ+ ACVGQQNVEGK
Sbjct: 649  FENQVNRILNDARDKTGGSAKNSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGK 708

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMGGREGLIDTAVKT+E
Sbjct: 709  RIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAE 768

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRL+KAME  MV YDGTVRNS+G VIQ  YGEDG+    +E Q+L ++K+    F
Sbjct: 769  TGYIQRRLIKAMEACMVAYDGTVRNSVGQVIQLRYGEDGLAGELVEFQSLPTIKLSNRAF 828

Query: 902  DKAFRFE-MDEENWNPNY---MLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIAT 957
            +  +RF+  +E      +   + +  + D + I E+   ++A V+  EA R     ++  
Sbjct: 829  ESKYRFDPSNERQLRKTFTEDVTKSLLGDSEVITEIEKEWEALVKDREALR-----KVFP 883

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            SG++   LP NL+R+IWNAQKTF ++ R PSD+ P+ V++ V  L +   +V GED LS 
Sbjct: 884  SGENKVVLPCNLQRMIWNAQKTFHINKRMPSDLSPLRVIQGVRDLLKNCVIVNGEDKLSK 943

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            +A +NATL F  L+RST  +KR+  E+RL  EAFEW+IGEIE+RF  +   PGEM+G +A
Sbjct: 944  QANENATLLFQCLVRSTLCTKRLADEYRLNTEAFEWLIGEIETRFQLAQAVPGEMVGAIA 1003

Query: 1078 AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTK 1137
            AQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIINV++  K PSL+VFL        
Sbjct: 1004 AQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINVSRSPKAPSLTVFLTGTAARDA 1063

Query: 1138 ERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISP 1197
            E+AK V C LE+TTL+ VT  T ++YDPD   T+I ED +FV  YY+MPD D +  ++SP
Sbjct: 1064 EKAKQVLCRLEHTTLKKVTANTAIYYDPDIKNTVIAEDQDFVTLYYDMPDVDTS--RMSP 1121

Query: 1198 WLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMN-DEAPK 1256
            WLLRIEL+R+ M DKKL+M  ++EKI   F +DL CIFNDDNA+KL+LRIRIMN DE+  
Sbjct: 1122 WLLRIELDRKRMTDKKLTMEQISEKITAGFGEDLNCIFNDDNAEKLVLRIRIMNSDESKF 1181

Query: 1257 GELNDE--SAEDDVFLKKIESNMLTEMALRGV---------------------------- 1286
            GE +++    EDD+FL+ IE+NML++M L+G+                            
Sbjct: 1182 GEEDEQIDKMEDDMFLRCIEANMLSDMTLQGIEAISKVYMHLPQTDNKKRIIITDTGEFR 1241

Query: 1287 ------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1334
                        +L+ V+   DVD  RT SN + EI  VLGIEAVR+++  E+  V+ F 
Sbjct: 1242 AIAEWLLETDGTSLMKVLSERDVDPVRTYSNDICEIFTVLGIEAVRKSIEKEMNAVLQFY 1301

Query: 1335 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
            G YVNYRHLA+LCD MT +G+LMAITRHGINR DTG +MR
Sbjct: 1302 GLYVNYRHLALLCDVMTAKGYLMAITRHGINRQDTGALMR 1341


>gi|222639938|gb|EEE68070.1| hypothetical protein OsJ_26086 [Oryza sativa Japonica Group]
          Length = 804

 Score = 1501 bits (3886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 713/804 (88%), Positives = 748/804 (93%), Gaps = 12/804 (1%)

Query: 71  ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP 130
           A MAECPGHFGHLELAKPMFHIGF+KTVLSIMR VCFNCSKILADEDD KFKQALKIRNP
Sbjct: 2   AGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTKFKQALKIRNP 61

Query: 131 KNRLKKILDACKNKTKCEGGDEIDV-PGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEY 189
           KNRLK+I DACK+K  C GGD++DV   QD +EP+KK +GGCGAQQP +T++GMKM+AE+
Sbjct: 62  KNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKK-RGGCGAQQPNITVDGMKMVAEF 120

Query: 190 KAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL 249
           KA +KKNDDQEQLPEPVERKQ L+AERVL VLKRISDEDC LLGLNPK+ARPDWMILQVL
Sbjct: 121 KAPKKKNDDQEQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFARPDWMILQVL 180

Query: 250 P----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFH 299
           P          +     R  DDLTHQLAMIIRHNENLRRQERNGAPAHII+EFAQLLQFH
Sbjct: 181 PIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIITEFAQLLQFH 240

Query: 300 IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTI 359
           IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP I
Sbjct: 241 IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPNI 300

Query: 360 NIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLR 419
           NID+LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR+DGQRLDLR
Sbjct: 301 NIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIREDGQRLDLR 360

Query: 420 YLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTS 479
           Y+KKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTS
Sbjct: 361 YVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTS 420

Query: 480 PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 539
           PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK
Sbjct: 421 PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 480

Query: 540 RDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHA 599
           RDT IEKDVFMNILMWWEDFDGKVP P ILKPRP+WTGKQVFNLIIPK INL R +AWH+
Sbjct: 481 RDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKPINLIRFSAWHS 540

Query: 600 DNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW 659
           + + G +T GDT+VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW
Sbjct: 541 EAETGFITPGDTMVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW 600

Query: 660 LVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMM 719
           LVNYWLLQN FSIGIGDTIADA TM  IN+TISKAK++VK LI QA DK LE EPGRTMM
Sbjct: 601 LVNYWLLQNGFSIGIGDTIADAATMVKINETISKAKDDVKELIMQAHDKQLEAEPGRTMM 660

Query: 720 ESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 779
           ESFEN+VNQVLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE
Sbjct: 661 ESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 720

Query: 780 GKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 839
           GKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT
Sbjct: 721 GKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 780

Query: 840 SETGYIQRRLVKAMEDIMVKYDGT 863
           SETGYIQRRLVKAMEDI+VKYDGT
Sbjct: 781 SETGYIQRRLVKAMEDIIVKYDGT 804


>gi|418204398|gb|AFX61753.1| RNA polymerase I largest subunit, partial [Ascosphaera cf. larvis
            64254]
          Length = 1616

 Score = 1500 bits (3884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 815/1646 (49%), Positives = 1089/1646 (66%), Gaps = 113/1646 (6%)

Query: 18   VQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTIDRKMKCETCTANMAE 75
            +QFG+LSPDEI++MSVV+I + ET   +R +P+  GL+DP+LGTIDR  KC TC   + +
Sbjct: 1    IQFGLLSPDEIKKMSVVKIVYPETMDDQRQRPREEGLNDPKLGTIDRAFKCATCEQGIMD 60

Query: 76   CPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLK 135
            CPGHFGH+ELA P+FHIGF+  +  ++ +VC NC KI AD  D K+ +AL+ R+PK R  
Sbjct: 61   CPGHFGHIELASPVFHIGFLTKIKKLLETVCINCGKIKADMTDSKYAEALRYRDPKRRFD 120

Query: 136  KILDACKNKTKCEGGDEI-DVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRK 194
             I   CK+K  CE    I D P  +    +    GGCG  QP++  EG+ ++  +K +  
Sbjct: 121  AIWRLCKDKLLCETTPIIQDDPFSNAPPQILYGHGGCGNPQPQIRREGLTLVGTWKPE-- 178

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            K+ DQ +   PV+R   +T +    V K IS  D +LLGL+ +YARP+WMI+ VLP+PPP
Sbjct: 179  KSVDQSESAPPVKR--VITPKEAREVFKNISSGDVRLLGLSNEYARPEWMIITVLPVPPP 236

Query: 255  PV-------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIA 301
            PV             R  DDLT++LA I+R N+N+ R + +G   H + EF  LLQ+H+A
Sbjct: 237  PVRPSVLVGGSGTNQRGEDDLTYKLAEIVRANQNVARCQVDGV-GHGLQEFEALLQYHVA 295

Query: 302  TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 361
            TY DN++ GQP+A Q+S RP+K+I  RLK KEGR+R NLMGKRVDFSARTVIT DP +++
Sbjct: 296  TYMDNDIAGQPKAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSL 355

Query: 362  DQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYL 421
            D++GVP SIA  LTY E VTPYNI +L  +V  GP+  PG   AKYIIR  G++L+L   
Sbjct: 356  DEVGVPVSIARTLTYTEVVTPYNISKLVAMVNNGPNIHPG---AKYIIRPTGEKLNLVGN 412

Query: 422  KKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP 480
            K  +    L+ G+KVERH+ DGD +LFNRQPSLHK S+M HR+++MPYSTFRLNLSVT+P
Sbjct: 413  KTPNPGRLLQYGFKVERHILDGDVILFNRQPSLHKESMMAHRVRVMPYSTFRLNLSVTTP 472

Query: 481  YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
            YNADFDGDEMN+HVPQS E+RAE+ EL +VP  IVSPQ N P+MGIVQDTL G  KI +R
Sbjct: 473  YNADFDGDEMNLHVPQSEESRAELKELALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRR 532

Query: 541  DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD 600
            DTF+ K+  MNI+MW  D+DG +PQP I+KPRP WTGKQ+ ++++P  +NL R     A 
Sbjct: 533  DTFLTKEHVMNIMMWVPDWDGVIPQPAIIKPRPRWTGKQIISMVLPSGLNLLRLDKDGAP 592

Query: 601  NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
              +      D+   I  GEL+ G   KKT+G + G +IH I+ E GPD    F   TQ +
Sbjct: 593  LAERFSPINDSGCFIHGGELMFGQFSKKTVGATGGGVIHTIFNEYGPDVCMSFFNGTQRV 652

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            VNYWLL N FSIGIGDTI DA T+  I + + + K  V+++   A   +L+P PG  + E
Sbjct: 653  VNYWLLHNGFSIGIGDTIPDANTVAKIEEAVRERKEEVEDITDDATRDALDPLPGMNIRE 712

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FE+KV++ LN ARD+AG+  +KSL + N+   M  +GSKGS INISQM A VGQQ+VEG
Sbjct: 713  TFESKVSRALNNARDDAGNVTEKSLKDCNHGVQMARSGSKGSTINISQMMAIVGQQSVEG 772

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+
Sbjct: 773  KRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTA 832

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQR+LVKA+E++MVKYDGTVRNSLGDV+QF+YGEDG+D   IE+Q +D +     +
Sbjct: 833  ETGYIQRKLVKALEEVMVKYDGTVRNSLGDVVQFIYGEDGLDGAHIENQRVDIITCSDEK 892

Query: 901  FDKAFRFE-MDEENWNPNYMLQ---EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIA 956
            F + FR + MD +   P  +L+   E  DD++  K L    D E ++L+ DR  L T + 
Sbjct: 893  FRQRFRVDFMDPDYTIPPDLLEHGKEIADDIEAQKYL----DEEWEQLQKDRNFLRT-VC 947

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
               +    LP+N++R++  A+ TF++     SD+HP EV+  V +L +RL VV G+D +S
Sbjct: 948  KEDEEMMQLPINVQRILETAKTTFRIREGTVSDLHPSEVIPQVRELLDRLVVVRGDDSIS 1007

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
             EAQ++ATL F   LRS  A +R++ E+ L + A + V+G IE+RF +++ +PGEM+G +
Sbjct: 1008 REAQESATLLFMCQLRSRLAFRRLVVEYSLNKLALQHVLGAIENRFARAIASPGEMVGVL 1067

Query: 1077 AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNST 1136
            AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVAK IKTPS++V+  P +   
Sbjct: 1068 AAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKNIKTPSMTVYQVPELAGN 1127

Query: 1137 KERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI--APEK 1194
            ++  K ++  +E+TTLRSV E  E++YDPD   T+IE D + V++Y+ +P ED+   PE+
Sbjct: 1128 QDAVKVLRSKVEHTTLRSVAEMIEIYYDPDIRNTVIEADKDMVETYFIIP-EDVQEKPEE 1186

Query: 1195 ISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEA 1254
             S WL+R+ L+   ++DK L++  VA++I   F++D+  +F+DDN+D+ ++RIR +    
Sbjct: 1187 QSQWLVRLVLSHIKLIDKGLTVQDVADRIKALFENDVNVMFSDDNSDQPVIRIRPL---- 1242

Query: 1255 PKGELNDESAED----DVFLKKIESNMLTEMALRGVN----------------------- 1287
             KG L+D+   D    D  LK  +++ML    LRGV+                       
Sbjct: 1243 -KGALDDDEEGDGNEMDHTLKIFQAHMLDHCTLRGVSGVERAFINEKTHARIMPDGSLSK 1301

Query: 1288 ------------------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
                              L  V+  + VDA RT SN  IEI+EV GIEA R ALL EL  
Sbjct: 1302 SAEDDQCKEWILETSGSALADVLTIDGVDATRTYSNQFIEILEVFGIEATRTALLRELTQ 1361

Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
            V++FDGSYVN+RHLA+L D MT RG LMA+TRHGINR+DTG +MRCSFEETV+ILL+AA 
Sbjct: 1362 VLAFDGSYVNHRHLALLIDIMTSRGFLMAVTRHGINRSDTGALMRCSFEETVEILLEAAA 1421

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARS 1449
            FAE D  RGV+EN++LGQ+AP GTG+  +YL+  ML   +     S   GL       +S
Sbjct: 1422 FAELDDCRGVSENLILGQMAPAGTGEFDVYLDQNMLMGVV-----STNAGLGMDAGDVKS 1476

Query: 1450 PV----SGTPYHDGMMSPGYLF----SPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPS 1501
             +    + TPY  G      +F     P+ + SP+   Q S       F+  + PG+   
Sbjct: 1477 SMLAEGAATPYDAGSPMQENMFVGMGDPDSKFSPIR--QVSGGETPQGFTDYAGPGFGGY 1534

Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSP-------TSPGYSPTSPTYSPSSPGYSPTSPAY 1554
            SPG + S  GYSP+SP  +  +            TSP    TSP +  SSPG+SPTSP++
Sbjct: 1535 SPGGARSPGGYSPSSPLSTSPTSPSYSPSSGYSPTSPAIGITSPRFM-SSPGFSPTSPSF 1593

Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSP 1580
            +PTSP+YSPTSP Y+      SPTSP
Sbjct: 1594 APTSPAYSPTSPMYAAGG---SPTSP 1616



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 65/134 (48%), Gaps = 6/134 (4%)

Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYS 1590
            Y   SP       G       +SP        +P        P +   SP  + +   YS
Sbjct: 1487 YDAGSPMQENMFVGMGDPDSKFSPIRQVSGGETPQGFTDYAGPGFGGYSPGGARSPGGYS 1546

Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
            P+SP  +  +      S  YSPTSPA   TSP +  +SP +SPTSPS++PTSP+YSPTSP
Sbjct: 1547 PSSPLSTSPTSPSYSPSSGYSPTSPAIGITSPRFM-SSPGFSPTSPSFAPTSPAYSPTSP 1605

Query: 1651 SYSPTSPSYSPTSP 1664
             Y+      SPTSP
Sbjct: 1606 MYAAGG---SPTSP 1616



 Score = 58.5 bits (140), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/93 (46%), Positives = 56/93 (60%), Gaps = 4/93 (4%)

Query: 1593 SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1652
             P +   SP  + +   YSP+SP  +  +      S  YSPTSP+   TSP +  +SP +
Sbjct: 1528 GPGFGGYSPGGARSPGGYSPSSPLSTSPTSPSYSPSSGYSPTSPAIGITSPRFM-SSPGF 1586

Query: 1653 SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
            SPTSPS++PTSPAYSPTSP Y+      SPTSP
Sbjct: 1587 SPTSPSFAPTSPAYSPTSPMYAAGG---SPTSP 1616



 Score = 57.0 bits (136), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 5/90 (5%)

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1666
             P +   SP  + +   YSP+SP  +  +      S  YSPTSP+   TSP +  +SP +
Sbjct: 1528 GPGFGGYSPGGARSPGGYSPSSPLSTSPTSPSYSPSSGYSPTSPAIGITSPRFM-SSPGF 1586

Query: 1667 SPTSPGYSPTSPSYSPTSPTY----SPTSP 1692
            SPTSP ++PTSP+YSPTSP Y    SPTSP
Sbjct: 1587 SPTSPSFAPTSPAYSPTSPMYAAGGSPTSP 1616



 Score = 50.1 bits (118), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 34/48 (70%), Gaps = 4/48 (8%)

Query: 1710 SSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTY----SPSSP 1753
            +SP +   SP   +SP +SPTS S++PTSP+YSP+SP Y    SP+SP
Sbjct: 1569 TSPAIGITSPRFMSSPGFSPTSPSFAPTSPAYSPTSPMYAAGGSPTSP 1616



 Score = 42.0 bits (97), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 37/59 (62%), Gaps = 11/59 (18%)

Query: 1723 TSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAP 1781
            TSP    TS  +  +SP +SP+SP+++P+SP         YSP+SP Y  +AG SP++P
Sbjct: 1569 TSPAIGITSPRFM-SSPGFSPTSPSFAPTSPA--------YSPTSPMY--AAGGSPTSP 1616



 Score = 40.4 bits (93), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 53/110 (48%), Gaps = 26/110 (23%)

Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1680
             P +   SP  + +   YSP+SP  +  +      S  YSPTSPA   TSP +  +SP +
Sbjct: 1528 GPGFGGYSPGGARSPGGYSPSSPLSTSPTSPSYSPSSGYSPTSPAIGITSPRFM-SSPGF 1586

Query: 1681 SPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPY-----SPTSP 1725
            SPTSP+++PTSP+Y                    SP SP      SPTSP
Sbjct: 1587 SPTSPSFAPTSPAY--------------------SPTSPMYAAGGSPTSP 1616


>gi|68300816|gb|AAY89349.1| RNA polymerase II largest subunit [Antirrhinum majus]
          Length = 780

 Score = 1495 bits (3871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 703/780 (90%), Positives = 740/780 (94%)

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            ATQRSGR IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID+LGVPWSIALN
Sbjct: 1    ATQRSGRXIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALN 60

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNIERLKELVEYGPHPPPGKTGA+YIIRDDGQRLDLRYLKKSSD HLELGY
Sbjct: 61   LTYPETVTPYNIERLKELVEYGPHPPPGKTGARYIIRDDGQRLDLRYLKKSSDMHLELGY 120

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH
Sbjct: 121  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 180

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL
Sbjct: 181  VPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 240

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLV 613
            MWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQINL R +AWH + +KG +T GDT V
Sbjct: 241  MWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQINLLRYSAWHQEKEKGFITPGDTQV 300

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
            RIEKGELL+GTLCKKTLGT TGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG
Sbjct: 301  RIEKGELLTGTLCKKTLGTGTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 360

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGDTIADA TME IN+TI  AKN VK LI+ AQ+K LE EPGRTMMESFEN+VNQVLN A
Sbjct: 361  IGDTIADAATMEKINETIQNAKNEVKELIRAAQEKQLEAEPGRTMMESFENRVNQVLNKA 420

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RD+AGSSAQKSLSE NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+DRTLP
Sbjct: 421  RDDAGSSAQKSLSEHNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLP 480

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM
Sbjct: 481  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 540

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN 913
            EDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ L+SLK+KKS+F+  +R+E+D  N
Sbjct: 541  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQPLESLKLKKSDFNDMYRYEIDSSN 600

Query: 914  WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLI 973
            WNP+YML E ++DLKTI+E+R VFDAEVQKLEADR+QL T IAT+GD+SWPLPVN++RL+
Sbjct: 601  WNPSYMLSEAVEDLKTIREIRSVFDAEVQKLEADRFQLGTGIATTGDNSWPLPVNIRRLV 660

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
             NAQKTFKVD RRPSDMHPME+VEAVDKLQERLKVV G+D LS+EAQKNATLFFNILLRS
Sbjct: 661  LNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVVGDDYLSMEAQKNATLFFNILLRS 720

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTF 1093
              ASKRVLKE+RLTREAFEWVIGEIESRFLQSLVA GEMIGCVAAQSIGEPATQMTLNTF
Sbjct: 721  ALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAGEMIGCVAAQSIGEPATQMTLNTF 780


>gi|3511287|gb|AAC62246.1| DNA-dependent RNA polymerase II largest subunit, partial [Breviata
            anathema]
          Length = 1690

 Score = 1484 bits (3841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 789/1717 (45%), Positives = 1081/1717 (62%), Gaps = 131/1717 (7%)

Query: 76   CPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLK 135
            CPGHFGH+ LAK ++H+ +++TV  +++ VC NCS++L D    K   + ++RN   RL 
Sbjct: 1    CPGHFGHVTLAKAVYHLAYIRTVCRVLQCVCMNCSRLLVDR---KISASTRLRNGAVRLN 57

Query: 136  KILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKK 195
            ++   C     C    E  V  ++ +      + GCGA+QP   +  + +      +  +
Sbjct: 58   EVSKMCLQYKTC---GECAVKTENAQ----VTRTGCGARQPLWRVSKLSI-----TRVPR 105

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
            +    +LPE         +E V+ +LK ISDEDC L+GLNP++ARP+WM++ +LP+PP  
Sbjct: 106  DSSGGELPE------VQDSEEVVRILKNISDEDCVLIGLNPRFARPEWMMITLLPVPPMT 159

Query: 256  VRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
            VRPS          DDLT QL+ I+++N  +R+ + +GA    I +   +LQ ++A +FD
Sbjct: 160  VRPSIAFGSVGRAEDDLTKQLSTIVKNNAQIRKLKLDGAAPINIQDTLDVLQINVACFFD 219

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            N +P   +A +   RPIKS+  RL+ KEGR+RG LMGKRVDFSAR+VITPDPT+ +++LG
Sbjct: 220  NSVPSLEKA-KNGNRPIKSLSERLRGKEGRVRGQLMGKRVDFSARSVITPDPTLALNELG 278

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP ++A NLT PE V+P NI RL  LV  GP   PG   AKY+IRDDG R+    L    
Sbjct: 279  VPRTVASNLTVPEMVSPLNIHRLAALVRNGPGTYPG---AKYVIRDDGARI---ALTSRG 332

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
            D  +  GY +ERHL DGD V+FNRQPSLHKMS+MGH+++++PYS+FRLNLSVT+PYNADF
Sbjct: 333  DMPIVPGYIIERHLMDGDHVVFNRQPSLHKMSMMGHQVRVLPYSSFRLNLSVTTPYNADF 392

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMNMHVP S E  +EV  LM VP  IV+PQ N P MG+VQD+LLGC  I++RDTF+ 
Sbjct: 393  DGDEMNMHVPNSLEAISEVKNLMAVPFQIVTPQKNSPCMGVVQDSLLGCSLISRRDTFLT 452

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGI 605
            +DV MN+ +       K+PQP IL+P+PLWTGKQ F++++PK ++      ++ + ++ +
Sbjct: 453  EDVMMNLALVISYDPDKIPQPAILRPKPLWTGKQAFSMLLPKDLSYKGKCGFYFNAEQSV 512

Query: 606  ---LTAG---------DTLVRIEKGELLSGTLCKKTLGTS-TGSLIHVIWEEVGPDAARK 652
               + A          D++VRI+KG+L +G +  K +G S  GS+IH++W++ GP AAR 
Sbjct: 513  SREVAAAQEEYMNSLLDSVVRIKKGQLHTGVITNKAVGKSGQGSIIHILWKDQGPMAARD 572

Query: 653  FLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEP 712
            FL   Q L N ++L   FS+G  DT+AD  T++ +   I  AK NVK  I  A+   L+ 
Sbjct: 573  FLSRVQLLTNAYILTRGFSVGTEDTLADPDTLQAVKAEIEGAKRNVKIHIDDARAGRLKV 632

Query: 713  EPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 772
            + GR+++ESFE K N+ L  A   AG  +  SL   NN K M+ +GSKGS +NI Q+T  
Sbjct: 633  QAGRSLVESFEAKTNKSLQDALSNAGKKSLSSLKYDNNFKLMIESGSKGSEMNICQITGM 692

Query: 773  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 832
            VGQQNVEGKRI FGF  RTLPHF KDDY PE+RGFVENSY+ GL+PQEFFFH MGGREGL
Sbjct: 693  VGQQNVEGKRIAFGFQRRTLPHFRKDDYEPEARGFVENSYVSGLSPQEFFFHMMGGREGL 752

Query: 833  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLD 892
            IDTAVKTSE+GYIQR+L+K+MEDI VKYD TVRN+ G ++QF YGEDG+D    E+Q + 
Sbjct: 753  IDTAVKTSESGYIQRKLMKSMEDISVKYDTTVRNAAGMILQFAYGEDGIDGTAHENQDIP 812

Query: 893  SLKMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL 951
            SL    ++  K + +   D + + P++   E +D+++    + +V + E  +L ADR  +
Sbjct: 813  SLNADDAKMRKLYDWNTADWDQYRPDFA-PETLDEIRRDARVAEVVEREFAQLMADRATV 871

Query: 952  -ATEIATSG-DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1009
             A + AT   D +  LPV++ R+I  A++ + +     SD+ P ++   +D L  R   +
Sbjct: 872  RAIKHATGARDDNVFLPVHVGRIIAKAKQHYHISETTRSDLSPADIYTTLDLLITRELNI 931

Query: 1010 PG--------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
             G         DPL  E +  A   F I+LR+  ASK ++ +H +T + + ++IGE+  +
Sbjct: 932  TGAAYAEGRRADPLGEEQRSTALTMFAIMLRAQLASKVMILKHHITLDCWGYIIGEVREK 991

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F ++LVAPGEM+G +AAQS GEP TQMTLNTFH AGV  KNVTLGVPRL+E+INV   ++
Sbjct: 992  FGRALVAPGEMVGAIAAQSFGEPTTQMTLNTFHSAGVGTKNVTLGVPRLKELINVNMALR 1051

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDP-------------DPM 1168
            TP++S+F++    +++E A  V   +++TT+R +    E+ YDP             D  
Sbjct: 1052 TPNISIFVQDPFCNSEENATKVPLHIKHTTVRDLVSRAEIIYDPMYVVDQMTGEAYFDCT 1111

Query: 1169 GTIIEEDVEFVKSYYEMPDE-DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEF 1227
             T++ ED  FV+  Y   D  +      S ++LR+ L+ ++M   +L   +V   +  EF
Sbjct: 1112 RTVVPEDEFFVQDNYMQADRLNYQTHSYSSFVLRVMLDTKVMQQMELKEESVVSIVKAEF 1171

Query: 1228 DDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNM--LTEMALRG 1285
            +D +  I   ++ +K  +RIR++ + A      DE   +D  L+ +E  +  L    +RG
Sbjct: 1172 EDAVEIISTVNDLNKPRMRIRLVRERAEAEAAVDEDRGEDDRLRDMEEIIMGLHVHGIRG 1231

Query: 1286 VN--------------------------------------LLAVMCHEDVDARRTTSNHL 1307
            +                                       LL VM H  VD  RTT+N +
Sbjct: 1232 MTKVMVDDSRTEKWVDERGALQTRRFWPLDGEVKKDTAPPLLDVMVHPAVDPYRTTTNSI 1291

Query: 1308 IEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN 1367
              I +VLG+EA R ALL ELR V+ FDGSY+N RHL +L D MT+RG+LM+ITR G+NR 
Sbjct: 1292 TVINDVLGVEAARAALLKELRDVLGFDGSYINIRHLLMLVDVMTFRGYLMSITRFGMNRT 1351

Query: 1368 DTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKN 1427
            D G +MR SFEETVD+L DAA FA  D LRGV++NIMLGQ+AP+GTG   L L+  +L+ 
Sbjct: 1352 DNGILMRASFEETVDVLQDAAQFAGHDELRGVSDNIMLGQVAPVGTGTFDLLLDAALLRE 1411

Query: 1428 AIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSP---------GYLFSPNLRLSPVTD 1478
            A + +  +  +     ++P  S    TPY   M+SP         G +FSP++ +SP   
Sbjct: 1412 AYQFRTTTESDARGAIISPVGSSPQHTPYSSHMLSPQAQAIDNTYGLMFSPSVTMSPSGG 1471

Query: 1479 AQFSPYVGGMAFSPTSSP---GYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1535
                  +G       SSP   GY P  PG SP++ GYSP SP YSP SP YSP SP YSP
Sbjct: 1472 FGMGMGMGMGDIPVPSSPGPFGYIP-VPG-SPAAAGYSPASPAYSPASPAYSPASPAYSP 1529

Query: 1536 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1595
             SP YSP+SP YSP SPAYSP SP+YSP SP+YSP SP+YSP SP+YSP SP+YSP SP+
Sbjct: 1530 ASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPA 1589

Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1655
            YSP SP+YSP SPAYSP SPAYSP SPAYSP SP+YSP SP+YSP SP+YSP SP+YSP 
Sbjct: 1590 YSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPA 1649

Query: 1656 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
            SP+Y P SPAYSP SP YSP SP+YSP SP Y P  P
Sbjct: 1650 SPAYGPASPAYSPASPAYSPASPAYSPASPAYDPAEP 1686



 Score =  228 bits (581), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 123/201 (61%), Positives = 144/201 (71%), Gaps = 24/201 (11%)

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
            SP +  YSP SPAYSP SPAYSP SPAYSP SP+YSP SP+YSP SP+YSP SP+YSP S
Sbjct: 1500 SPAAAGYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPAS 1559

Query: 1657 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSP 1716
            P+YSP SPAYSP SP YSP SP+YSP SP YSP SP             AYSP+SP  SP
Sbjct: 1560 PAYSPASPAYSPASPAYSPASPAYSPASPAYSPASP-------------AYSPASPAYSP 1606

Query: 1717 ASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA- 1774
            ASP YSP SP YSP S +YSP SP+YSP+SP YSP+SP         YSP+SP Y P++ 
Sbjct: 1607 ASPAYSPASPAYSPASPAYSPASPAYSPASPAYSPASPA--------YSPASPAYGPASP 1658

Query: 1775 GYSPSAPGYSPSSTSQYTPQT 1795
             YSP++P YSP+S + Y+P +
Sbjct: 1659 AYSPASPAYSPASPA-YSPAS 1678



 Score = 81.6 bits (200), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 63/88 (71%), Gaps = 6/88 (6%)

Query: 1709 PSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP 1768
            P SP    A+ YSP SP YSP S +YSP SP+YSP+SP YSP+SP  +   +P YSP+SP
Sbjct: 1498 PGSP---AAAGYSPASPAYSPASPAYSPASPAYSPASPAYSPASPAYS-PASPAYSPASP 1553

Query: 1769 QYSPSA-GYSPSAPGYSPSSTSQYTPQT 1795
             YSP++  YSP++P YSP+S + Y+P +
Sbjct: 1554 AYSPASPAYSPASPAYSPASPA-YSPAS 1580


>gi|68300819|gb|AAY89350.1| RNA polymerase II largest subunit [Solanum lycopersicum]
          Length = 773

 Score = 1476 bits (3820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 696/773 (90%), Positives = 732/773 (94%)

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            ATQRSGRPIKSICSRLK+KEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN
Sbjct: 1    ATQRSGRPIKSICSRLKSKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 60

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD HLELGY
Sbjct: 61   LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGY 120

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH
Sbjct: 121  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 180

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDTLLGCRK+TKRDTFIEKDVFMNIL
Sbjct: 181  VPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKVTKRDTFIEKDVFMNIL 240

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLV 613
            MWWEDFDGKVP P ILKPRPLWTGKQVFNLIIPKQINL R + WH D++KG +T GDT V
Sbjct: 241  MWWEDFDGKVPAPVILKPRPLWTGKQVFNLIIPKQINLLRYSVWHNDSEKGYITPGDTQV 300

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
            RIEKGELLSGTLCKKTLGTSTGSLIHVIW EVGPDAARKFLGHTQWLVNYWLLQ AFSIG
Sbjct: 301  RIEKGELLSGTLCKKTLGTSTGSLIHVIWXEVGPDAARKFLGHTQWLVNYWLLQQAFSIG 360

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGDTIADA TME IN+TIS AK  VK LIK AQ+K LE EPGRTMMESFEN+VNQVLN A
Sbjct: 361  IGDTIADASTMEKINETISNAKAKVKELIKAAQEKLLEAEPGRTMMESFENRVNQVLNKA 420

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RD+AGSSA+KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF+DRTLP
Sbjct: 421  RDDAGSSAEKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLP 480

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM
Sbjct: 481  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 540

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN 913
            EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE+Q LDSLK KK  FD  + +E+D+ N
Sbjct: 541  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIETQKLDSLKAKKGTFDDMYAYEIDDPN 600

Query: 914  WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLI 973
            WNP+YML E ++DLK I+E+R VFDAEVQKLEADR+QL TEIA +GD+SWPLPVN++RL+
Sbjct: 601  WNPSYMLPEAVEDLKGIREIRSVFDAEVQKLEADRHQLGTEIAVTGDNSWPLPVNIQRLV 660

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
             NAQKTFK+D RRPSDMHPME+VEAVDKLQERLKVVPG+D LS+EAQKNATLFFNILLRS
Sbjct: 661  LNAQKTFKIDFRRPSDMHPMEIVEAVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRS 720

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1086
              ASKRVLKE+RL+REAFEWV+GEIESRFLQSLVAPGEMIGCVAAQSIGEPAT
Sbjct: 721  ALASKRVLKEYRLSREAFEWVVGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 773


>gi|326472846|gb|EGD96855.1| DNA-dependent RNA polymerase II largest subunit [Trichophyton
            tonsurans CBS 112818]
          Length = 1657

 Score = 1470 bits (3805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 841/1782 (47%), Positives = 1106/1782 (62%), Gaps = 250/1782 (14%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETT--ERGKPKPGGLSDPRLGTI 60
             RFPYS A++  ++ +QFG+LSP+EI++MSV  +E+ ET   +R +P+  GL+DPRLGTI
Sbjct: 4    VRFPYSKAQLRTIKEIQFGLLSPEEIKRMSVCHVEYPETMDDQRQRPREKGLNDPRLGTI 63

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            DR  +C TC   + +CPGHFGH+EL+ P+FHIGF+  +  ++ +VC NC KI A+  D K
Sbjct: 64   DRNWRCATCEEGINDCPGHFGHIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQK 123

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGG--DEIDVPGQDGEEPLKKNKGGCGAQQPKL 178
            +  AL+ R+PK R   I    K+   CE    +E D   ++  +P++ + GGCG  QP++
Sbjct: 124  YLDALRFRDPKKRFDAIWRLSKDILICEADPPEEDDPFAKESSKPVQGH-GGCGNVQPQV 182

Query: 179  TIEGMKMIAEYKAQRKKN--DDQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
              EG+ ++  +K  + ++  DD E Q PE    K+ +T +  L + + IS+ED +L+GL+
Sbjct: 183  RKEGITLMGTWKPSKMRDMMDDNEIQQPE----KKQITPQMALTIFRNISEEDVRLMGLS 238

Query: 236  PKYARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERN 282
              YARP+WMI+ VLP+PPPPV             R  DDLT++LA IIR N+N+ R E+ 
Sbjct: 239  NDYARPEWMIITVLPVPPPPVRPSVLVGGSGTGQRGEDDLTYKLAEIIRANQNVTRCEQE 298

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+P H++ EF  LLQ+H+ATY DN++ G P+A Q+S RP+K+I  RLK KEGR+R NLMG
Sbjct: 299  GSPEHVVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMG 358

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRVDFSARTVIT DP +++D++GVP SIA  LTYPE VTPYNI RL +LV+ GP   PG 
Sbjct: 359  KRVDFSARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNGPDVHPG- 417

Query: 403  TGAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
              A+++IR  G+R+DLR+ K     + L+ G+KVERHL DGDF+LFNRQPSLHK S+M H
Sbjct: 418  --ARHVIRSSGERIDLRHHKGGGGRNFLQWGWKVERHLMDGDFILFNRQPSLHKESMMSH 475

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
            R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L +VP  IVSPQ N 
Sbjct: 476  RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVSPQRNG 535

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
            P+MG   +    C              FM   + W         P ILKPRP W+GKQ+ 
Sbjct: 536  PLMGAGYE----CS-------------FMGSGLGW------CSSPAILKPRPRWSGKQMI 572

Query: 582  NLIIPKQINLFRTAAWHADNDKGILTA-----GDTLVRIEKGELLSGTLCKKTLGTSTGS 636
            ++++P  +NL R      D DK  ++       D  V +  GEL+ G   KKT+G S G 
Sbjct: 573  SMVLPSGLNLLRI-----DKDKSPISEKFSPLADGGVLVHGGELMYGMFSKKTVGASGGG 627

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            ++H I+ E GPDAA  F    Q +VNYWLL N FSIGIGDTI D +T++ I + +   K 
Sbjct: 628  VVHTIFNEYGPDAAMSFFNGAQAVVNYWLLHNGFSIGIGDTIPDLETIQKIENAVRVRKE 687

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
             V ++   A + +LE  PG  + E+FE+KV++ LN ARDEAG++ +KSL +SNN   M  
Sbjct: 688  EVDSITASATENTLEALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMAR 747

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
            +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGL
Sbjct: 748  SGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGL 807

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
            TP EFFFHAM GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD++QFLY
Sbjct: 808  TPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIVQFLY 867

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEEN-WNPNYMLQ--EYIDDLKTIKE 932
            GEDG+D   IE+Q +D +K    +F   FR + MD E   +P+ + Q  E   D++  K 
Sbjct: 868  GEDGLDGQCIENQRVDVIKCSDEQFRNRFRVDLMDPERLLSPDVLEQATEIAGDIEVQKH 927

Query: 933  LRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHP 992
            L    D E ++L  DR  L T +    D    LP+N++R++ +A+ TF++     SD+HP
Sbjct: 928  L----DEEWEQLLKDRAFLRT-VVKEDDEMMQLPINIQRILESAKTTFRIRDGTISDLHP 982

Query: 993  MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1052
             EVV  V +L +RL VV G+D LS EAQ++ATL F   LRS  A +R++ E+ L + AF+
Sbjct: 983  AEVVPQVRQLLDRLLVVRGDDALSREAQESATLLFKAQLRSRLAFRRLVVEYSLNKLAFQ 1042

Query: 1053 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1112
             V+G IESRF ++   PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLG      
Sbjct: 1043 HVLGAIESRFGKAAANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLG------ 1096

Query: 1113 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1172
                                                         +TE++YDP+   T+I
Sbjct: 1097 ---------------------------------------------STEIYYDPNIQSTVI 1111

Query: 1173 EEDVEFVKSYYEMPDEDIAPEKI-----------SPWLLRIELNREMMVDKKLSMAAVAE 1221
            E DV+ V+SY+ +P ED+A +             S WLLRI L+R  ++DK L++  VA 
Sbjct: 1112 ENDVDMVESYFIIP-EDVADDSSRQSKWLLRIIQSKWLLRIILSRPKLLDKGLTVQDVAT 1170

Query: 1222 KINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEM 1281
            KI + +  D+  IF+D+NAD+ ++RIR + D  PK + +++  E DV LKK+ES++L  +
Sbjct: 1171 KIKEAYPQDIAVIFSDNNADEQVVRIRQIQD--PKQDEDNDDTEYDVTLKKLESHLLDTL 1228

Query: 1282 ALRGV-----------------------------------------NLLAVMCHEDVDAR 1300
             LRGV                                          L  V+    +DA 
Sbjct: 1229 TLRGVPGIDRAFINEKSRTRVLEDGSLHQSASDPECKEWVLETSGSALADVLAIPGIDAS 1288

Query: 1301 RTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1360
            RT SN  +EI+EV GIEA RR   +EL    +          + +     T+  H     
Sbjct: 1289 RTYSNQFVEILEVFGIEATRRPFSEELTQGAA---------SMVLTSPIDTWHSH----- 1334

Query: 1361 RHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYL 1420
                    TG +MRCSFEETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+   YL
Sbjct: 1335 --------TGALMRCSFEETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDFYL 1386

Query: 1421 NDEMLKNAIELQLPSYMEGLE-FGMT---PARSPVSGTPYHDGMMSPGYLFS--PNLRLS 1474
            +  ML   +         G E  GM     A    SG+P  + M    Y+ S  P+ + S
Sbjct: 1387 DQSMLMGVVSNNAGLGAMGEEPKGMLSDGAATQYDSGSPMQENM----YISSPDPDSQFS 1442

Query: 1475 PVTDAQFSPYVGGMAFSPTSSPGYSPSSP-----GYSPSSP-GYSPTSPGYSPTSPGYSP 1528
            PV  A     VG   + P S  G+SP  P     GYSPSSP   SPTSP YSP+S GYSP
Sbjct: 1443 PVRQAGSENTVGFADYQPPSYGGFSPHEPRSPGGGYSPSSPFNTSPTSPAYSPSS-GYSP 1501

Query: 1529 TSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY----SPTSPSYSPTSPS--- 1581
            TSPG S TSP +  SSP +SP SP+++PTSP+YSPTSP Y    SPTSPSYSPTSP    
Sbjct: 1502 TSPGMSITSPRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSYSPTSPGFSP 1560

Query: 1582 ------------------YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
                              +SPTSPSYSPTSP+   T    SPT    SPTSP Y+PTSP 
Sbjct: 1561 TSPSYSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRHLSPT----SPTSPKYTPTSPG 1616

Query: 1624 YSPTSP-SYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPT 1662
            +SPTSP +YSPTSP++  SPTSP   PTSP YSPTSP+++PT
Sbjct: 1617 WSPTSPEAYSPTSPNFSGSPTSPG-GPTSPGYSPTSPTFNPT 1657



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/237 (48%), Positives = 141/237 (59%), Gaps = 52/237 (21%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS--YSPTSP-SYSPTSPSY 1603
            +SP   A S  +  ++   P      PSY   SP + P SP   YSP+SP + SPTSP+Y
Sbjct: 1441 FSPVRQAGSENTVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1493

Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPSY 1659
            SP+S  YSPTSP  S TSP +  +SP++SP SPS++PTSP+YSPTSP Y    SPTSPSY
Sbjct: 1494 SPSS-GYSPTSPGMSITSPRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1551

Query: 1660 SPTSPA---------------------YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
            SPTSP                      +SPTSP YSPTSP+   T    SPTSP+     
Sbjct: 1552 SPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRHLSPTSPT----- 1606

Query: 1699 AKYSPSLAYSPSSPRLSPASP--YSPTSPNY--SPTSSSYSPTSPSYSPSSPTYSPS 1751
                 S  Y+P+SP  SP SP  YSPTSPN+  SPTS    PTSP YSP+SPT++P+
Sbjct: 1607 -----SPKYTPTSPGWSPTSPEAYSPTSPNFSGSPTSPG-GPTSPGYSPTSPTFNPT 1657



 Score =  140 bits (352), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 107/232 (46%), Positives = 142/232 (61%), Gaps = 40/232 (17%)

Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA--YSPTSP-AYSPTSPSY 1631
            +SP   + S  +  ++   P      PSY   SP + P SP   YSP+SP   SPTSP+Y
Sbjct: 1441 FSPVRQAGSENTVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1493

Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY----SPTSPTY 1687
            SP+S  YSPTSP  S TSP +  +SP++SP SP+++PTSP YSPTSP Y    SPTSP+Y
Sbjct: 1494 SPSS-GYSPTSPGMSITSPRFI-SSPAFSPASPSFAPTSPAYSPTSPGYGQAQSPTSPSY 1551

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS----------SSYSPT 1737
            SPTSP ++P S  YSP+      +  +     +SPTSP+YSPTS          S  SPT
Sbjct: 1552 SPTSPGFSPTSPSYSPTSPSFSPASPV-----FSPTSPSYSPTSPALGGTGRHLSPTSPT 1606

Query: 1738 SPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY--SPSAGYSPSAPGYSPSS 1787
            SP Y+P+SP +SP+SP         YSP+SP +  SP++   P++PGYSP+S
Sbjct: 1607 SPKYTPTSPGWSPTSPEA-------YSPTSPNFSGSPTSPGGPTSPGYSPTS 1651



 Score = 85.1 bits (209), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/208 (34%), Positives = 101/208 (48%), Gaps = 66/208 (31%)

Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG--YSPTSP-SYSPTSPTY 1687
            +SP   + S  +  ++   P      PSY   SP + P SPG  YSP+SP + SPTSP Y
Sbjct: 1441 FSPVRQAGSENTVGFADYQP------PSYGGFSP-HEPRSPGGGYSPSSPFNTSPTSPAY 1493

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY------ 1741
            SP+S               YSP+SP +S  SP   +SP +SP S S++PTSP+Y      
Sbjct: 1494 SPSS--------------GYSPTSPGMSITSPRFISSPAFSPASPSFAPTSPAYSPTSPG 1539

Query: 1742 -----SPSSPTYSPSSPYNAGGGNPD-------------YSPSSPQYSPSA--------- 1774
                 SP+SP+YSP+SP  +                   +SP+SP YSP++         
Sbjct: 1540 YGQAQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPVFSPTSPSYSPTSPALGGTGRH 1599

Query: 1775 ---------GYSPSAPGYSPSSTSQYTP 1793
                      Y+P++PG+SP+S   Y+P
Sbjct: 1600 LSPTSPTSPKYTPTSPGWSPTSPEAYSP 1627


>gi|294876122|ref|XP_002767562.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
            marinus ATCC 50983]
 gi|239869222|gb|EER00280.1| DNA-directed RNA polymerase II largest subunit, putative [Perkinsus
            marinus ATCC 50983]
          Length = 1667

 Score = 1458 bits (3775), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 747/1525 (48%), Positives = 1021/1525 (66%), Gaps = 116/1525 (7%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
            +D   PYS AE+ KV  V+FGILSP    Q ++ Q E         P  GGLSDPRLG++
Sbjct: 5    LDLNEPYSSAELKKVASVEFGILSP----QQTIAQSE---------PVRGGLSDPRLGSV 51

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
            D +  CETC   M +CPGHFGHLELAKPM+H GF+KT L  +R VC+ CSK+LAD +D  
Sbjct: 52   DPRTPCETCGMKMRDCPGHFGHLELAKPMYHGGFLKTTLKALRCVCYYCSKLLADPNDLV 111

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK-------------- 166
             K+ L+++NPK RL+ +   CK++  C+ G    V    G++  +               
Sbjct: 112  IKRVLRVKNPKTRLQAMSVICKSRKVCDSGGMESVMKSGGKQQDEDIDDEDVAHTGTLVH 171

Query: 167  ---------NKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERV 217
                     N  GCG  QP  T++GM++I  + +   + ++   + +  + K+ L+AE  
Sbjct: 172  PSTTSLVVLNMLGCGYAQPSYTVQGMQIIVSFPSSANEENEDGVVVDQGDTKRPLSAETA 231

Query: 218  LGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV-----------RPSDDLTHQL 266
              +L RIS  D   +G  P  + P W+IL V+P+PPPPV           R  DDLT +L
Sbjct: 232  YNILSRISVPDMIAMGFTPGRSEPSWLILTVVPVPPPPVRPSVAFGGGTDRAEDDLTLKL 291

Query: 267  AMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC 326
              I++ N+ L+RQ   GA +HI++E A LLQ+H+ T  DN +PG P A  +S + IKSI 
Sbjct: 292  QDIVKVNQMLKRQLETGAGSHIVNEIAALLQWHLYTLQDNNIPGMPEAQTKSKKAIKSIR 351

Query: 327  SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE 386
            SRLK KEGRIRGNLMGKRVDFSARTVIT DP I+IDQ+GVP SIA+NLT+ E VTP N  
Sbjct: 352  SRLKGKEGRIRGNLMGKRVDFSARTVITGDPNIDIDQVGVPKSIAMNLTFAERVTPLNYA 411

Query: 387  RLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVL 446
            +++ELV  GP   PG   AK IIRDD   +DLR+ K++ D  L  G++VERH+ D D V+
Sbjct: 412  KMRELVMRGPTSWPG---AKRIIRDDNSCIDLRFTKQAQDIVLRYGWRVERHMQDNDLVI 468

Query: 447  FNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLE 506
            FNRQPSLHKMS+MGHR KI+P+STFRLNLSVTSPYNADFDGDEMNMH+ QS ETRAE+  
Sbjct: 469  FNRQPSLHKMSMMGHRAKILPFSTFRLNLSVTSPYNADFDGDEMNMHLAQSHETRAEIRN 528

Query: 507  LMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW-----WEDFDG 561
            +MMVP+ +VSPQ NRPVMGIVQD+LL    +TKRDTFIEKD+ M +LMW     W+   G
Sbjct: 529  IMMVPRQVVSPQGNRPVMGIVQDSLLASTLLTKRDTFIEKDMCMQLLMWLLPASWDG--G 586

Query: 562  KVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN--DKGILTAGDTLVRIEKGE 619
             +P P ILKPRPLW+GKQ+F++++PK I+L + A   + N  D    +  D  V I++GE
Sbjct: 587  NMPMPCILKPRPLWSGKQLFSMLLPK-ISLQKDAGIASKNRGDDPWFSRSDCRVIIQEGE 645

Query: 620  LLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 679
            ++SG +CKKT+G S+G LIH+ W + GP+  ++F+G  Q LVN+WLL + F++G  D +A
Sbjct: 646  IMSGVICKKTVGASSGGLIHITWLDYGPERTKQFIGGIQRLVNFWLLHHGFTVGCADIVA 705

Query: 680  DAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGS 739
            +  TM+ + DT+++AK +V+ L+  AQ   LE +PG+++ +SFE +VNQ LN AR+++G 
Sbjct: 706  NDGTMQKVADTLAQAKRDVRKLVLDAQRGRLEAQPGKSLQQSFEARVNQRLNQAREDSGR 765

Query: 740  SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDD 799
             A  SL + NN+ AMV +GSKG+ INI+Q+ ACVGQQNVEGKRIP GF DRTLPHFTKDD
Sbjct: 766  LAADSLDDKNNIIAMVDSGSKGNPINIAQIIACVGQQNVEGKRIPTGFRDRTLPHFTKDD 825

Query: 800  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
            +GPESRGFVENSYL GLTPQEFFFHAMGGREG+IDTA KT+ETGYIQRRL+K+ME I V+
Sbjct: 826  FGPESRGFVENSYLAGLTPQEFFFHAMGGREGIIDTACKTAETGYIQRRLIKSMESIKVR 885

Query: 860  YDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYM 919
            YDG+VRN + +V+QFLYGEDGM + +IE Q ++ +K+         + +    ++   ++
Sbjct: 886  YDGSVRNEMDEVVQFLYGEDGMTAEYIEDQDIELMKISHERLAAIAKHDYLNPDYGRGWI 945

Query: 920  LQEYI-DDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQK 978
              E +  +++   E++ V D E + L+  +  L T++   G+S   +P+N++RLI     
Sbjct: 946  KDEKVRSNIRMNHEVQAVLDREFENLKEMKRLLCTKVYKDGESRQHIPINVRRLIDQCHY 1005

Query: 979  TFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG---EDPLSVEAQKNATLFFNILLRSTF 1035
             F  +        P EVV+ V++  +RL+V+ G   +  L  EAQ NAT+     LR   
Sbjct: 1006 LFPAEEDPDVFYPPQEVVQKVEETLDRLRVIRGLTDDQVLGWEAQHNATVVLQAHLRYHL 1065

Query: 1036 ASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1095
            AS+++L+  RL + A +W++GE+E RF +SLVA GE +G +AAQSIGEPATQMTLNTFH+
Sbjct: 1066 ASRKLLERDRLGQRAVDWLLGEVEQRFEKSLVAAGESVGTIAAQSIGEPATQMTLNTFHF 1125

Query: 1096 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSV 1155
            AGV +KNVTLGVPRL+EIINVAK +KTPS++V+L P   S   +AK VQ  LE+T+L  +
Sbjct: 1126 AGVGSKNVTLGVPRLKEIINVAKNLKTPSMTVYLHPDYASDDAKAKQVQSELEHTSLGKI 1185

Query: 1156 TEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1215
            T  T++ +DPD   +I+EED + V+ YYE+P++D    + SPW+LRI+L+  +M+DKKLS
Sbjct: 1186 TSYTQILFDPDVRTSILEEDRQLVEEYYELPEDDFDSSRCSPWVLRIKLDNSVMIDKKLS 1245

Query: 1216 MAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVF------ 1269
               V +KI +++  D+ CI +DDN++ LI+RIR++ D      L+     D VF      
Sbjct: 1246 TRFVGQKIVEDYGGDVQCIVSDDNSENLIVRIRLLRDTEVVLSLSLLLYNDRVFNRPRRT 1305

Query: 1270 ----------LKKIESNMLTEMALRGV--------------------------------- 1286
                      LKK+E ++L+++ L+G+                                 
Sbjct: 1306 DYDGEEDFRLLKKVEGSLLSDLTLKGIPGVTKCYMRQDNRVQYSSDVGTFARSREWVLDT 1365

Query: 1287 ---NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
               NL  V+  E VD+ RT SN ++EI+ VLGIEA R+ALL+ELR VISFDGSYVNYRH+
Sbjct: 1366 DGCNLEQVLTMEAVDSTRTFSNDIVEILNVLGIEACRKALLNELRQVISFDGSYVNYRHM 1425

Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
            ++LCDTM  +GHLM+ITRHGINR + GP+MR SFEE V++L+DAA +AE+D++RGV+ENI
Sbjct: 1426 SVLCDTMCQKGHLMSITRHGINRVERGPLMRSSFEEMVEMLMDAACYAETDHMRGVSENI 1485

Query: 1404 MLGQLAPIGTGDCSLYLNDEMLKNA 1428
            MLGQLAPIGT +C L ++ + L +A
Sbjct: 1486 MLGQLAPIGTAECELLIDTDKLVDA 1510


>gi|222639936|gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japonica Group]
          Length = 1526

 Score = 1458 bits (3774), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 694/807 (85%), Positives = 742/807 (91%), Gaps = 35/807 (4%)

Query: 728  QVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 787
            +VLN ARD+AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF
Sbjct: 409  KVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 468

Query: 788  VDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQR 847
            +DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE LIDTAVKTSETGYIQR
Sbjct: 469  IDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRESLIDTAVKTSETGYIQR 528

Query: 848  RLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF 907
            RLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ LDSLKMKK EFD  FR+
Sbjct: 529  RLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKGEFDNVFRY 588

Query: 908  EMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPV 967
            E+D+ENW PNYML E++DDLKTI+E R+VF+AEVQKLEADR+QL +EIAT+GD++WP+PV
Sbjct: 589  ELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRFQLGSEIATTGDNTWPMPV 648

Query: 968  NLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFF 1027
            NLKRLIWNAQKTFK+D RRPSDMHPME+VEA+DKLQERLKVVPG+D +S+EAQKNATLFF
Sbjct: 649  NLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATLFF 708

Query: 1028 NILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQ 1087
            NILLRSTFASKRVLKE+RLT+EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQ
Sbjct: 709  NILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQ 768

Query: 1088 MTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCAL 1147
            MTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSV+LKP VN  KE AKNVQCAL
Sbjct: 769  MTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKKKELAKNVQCAL 828

Query: 1148 EYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNRE 1207
            EYTTLRSVT ATE+WYDPDP+GTIIEEDVEFV+SYYEMPDEDI P+KISPWLLRIELNRE
Sbjct: 829  EYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDIDPDKISPWLLRIELNRE 888

Query: 1208 MMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDD 1267
            MMVDKKLSMA +AEKIN EFDDDL+CIFNDDNADKLILR+RI NDEAPKGE+ DESAEDD
Sbjct: 889  MMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRITNDEAPKGEIQDESAEDD 948

Query: 1268 VFLKKIESNMLTEMALR-----------------------------------GVNLLAVM 1292
            VFLKKIESNMLTEMALR                                   GVNLLAVM
Sbjct: 949  VFLKKIESNMLTEMALRGIPDINKVFIKYGKVNKFEDNVGFKADNEWMLDTEGVNLLAVM 1008

Query: 1293 CHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTY 1352
            CHEDVDA RTTSNHLIE+IEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTY
Sbjct: 1009 CHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTY 1068

Query: 1353 RGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIG 1412
            RGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AESDYLRGVTENIMLGQLAPIG
Sbjct: 1069 RGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDYLRGVTENIMLGQLAPIG 1128

Query: 1413 TGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLR 1472
            TG C+LYLND+ML+ AIELQLPSY+EGL+FGMTPARSP+SGTPYH+GMMSP YL SPN+R
Sbjct: 1129 TGGCALYLNDQMLQQAIELQLPSYVEGLDFGMTPARSPISGTPYHEGMMSPSYLLSPNIR 1188

Query: 1473 LSPVTDAQFSPYVGGMAFSPTSSPGYS 1499
             SP+TDAQFSPYVGGMAFSP  SPGY+
Sbjct: 1189 ASPITDAQFSPYVGGMAFSPVPSPGYT 1215



 Score =  712 bits (1837), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/452 (77%), Positives = 372/452 (82%), Gaps = 47/452 (10%)

Query: 1   MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
           MD RFPYSPAEVAK              RQMSVVQIEH ET ERGKPKPGGLSDPRLGTI
Sbjct: 1   MDARFPYSPAEVAK--------------RQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 46

Query: 61  DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
           DRK+KCETC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMR VCFNCSKILADEDD K
Sbjct: 47  DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDDTK 106

Query: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDV-PGQDGEEPLKKNKGGCGAQQPKLT 179
           FKQALKIRNPKNRLK+I DACK+K  C GGD++DV   QD +EP+KK +GGCGAQQP +T
Sbjct: 107 FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQQDTDEPVKK-RGGCGAQQPNIT 165

Query: 180 IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
           ++GMKM+AE+KA +KKNDDQEQLPEPVERKQ L+AERVL VLKRISDEDC LLGLNPK+A
Sbjct: 166 VDGMKMVAEFKAPKKKNDDQEQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKFA 225

Query: 240 RPDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
           RPDWMILQVLP          +     R  DDLTHQLAMIIRHNENLRRQERNGAPAHII
Sbjct: 226 RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII 285

Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
           +EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 286 TEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 345

Query: 350 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
           RTVITPDP INID+LGVPW                     +LVEYGPHPPPGKTGAKYII
Sbjct: 346 RTVITPDPNINIDELGVPW---------------------KLVEYGPHPPPGKTGAKYII 384

Query: 410 RDDGQRLDLRYLKKSSDHHLELGYKVERHLND 441
           R+DGQRLDLRY+KKSSD HLELGYKV     D
Sbjct: 385 REDGQRLDLRYVKKSSDQHLELGYKVLNKARD 416


>gi|12642618|gb|AAK00313.1|AF315823_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Stylonychia
            mytilus]
          Length = 1678

 Score = 1452 bits (3759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 819/1755 (46%), Positives = 1108/1755 (63%), Gaps = 173/1755 (9%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            +ELA+P++H G ++ +  ++R  CF CS++LAD++  K ++  ++++   +L ++L    
Sbjct: 1    IELARPVYHAGLLEFIRKVLRCCCFYCSRLLADKN--KLEEIKRLKSSSAKLARVLKLSD 58

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQL 202
               +C+       P Q+G          CG +QPK    G+++  EY          EQ 
Sbjct: 59   GVKECD-------PQQNG----------CGHRQPKFQKTGLRIQVEYF--------DEQY 93

Query: 203  PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS--- 259
                +RKQ L A+  L VL+RI+DEDC+L+G NP+ +RP+ MI++ L + PPPVRPS   
Sbjct: 94   DPGKDRKQILQADEALRVLERITDEDCELMGFNPRISRPENMIIKNLAVAPPPVRPSVSM 153

Query: 260  -------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQP 312
                   DDLT+    I++ N  L+ Q   GA    I+E    LQ+++AT  DNE+ GQP
Sbjct: 154  SNTMRSEDDLTYCYQKILQTNITLQNQINRGANMTTINELRTNLQYYVATVMDNEIQGQP 213

Query: 313  RATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIAL 372
                +SG+P+K+I +RL+ KEGR+RGNLMGKRVDFSARTVITPDP + +DQLGVP  IAL
Sbjct: 214  TQKHKSGKPLKAIRARLRGKEGRLRGNLMGKRVDFSARTVITPDPNLQLDQLGVPQQIAL 273

Query: 373  NLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELG 432
            NLT PETVT  NI+ +++L+E GP+  PG   AKYIIR D +++DL  ++  S+  +  G
Sbjct: 274  NLTVPETVTNENIDEMRKLIERGPNIWPG---AKYIIRHDDRQIDLSQMRNRSEATIHPG 330

Query: 433  YKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNM 492
            +KVERHL D D+V+FNRQPSLHKMS+MGHR+K++P+STFRLNLSVT+PYNADFDGDEMNM
Sbjct: 331  FKVERHLRDNDYVIFNRQPSLHKMSLMGHRVKVLPFSTFRLNLSVTTPYNADFDGDEMNM 390

Query: 493  HVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNI 552
            HVPQS+ET AE+ E+M VP  IVSPQSN+PVMGIVQD+LLG    T +DTFIEK++ M +
Sbjct: 391  HVPQSYETMAEIKEIMAVPNQIVSPQSNKPVMGIVQDSLLGVMLFTLKDTFIEKELVMQL 450

Query: 553  LMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGIL--TAGD 610
            LMW +  D K P PTILKPRPLWTGKQ+F+LIIP  INL +         KG++  +AGD
Sbjct: 451  LMWAKYEDDKFPMPTILKPRPLWTGKQIFSLIIP-DINLQKVGE-----KKGLIWDSAGD 504

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
              + I KGEL+ G L K T+G+S+G +IH+IW+E GP   R FL +TQ ++N WL QN F
Sbjct: 505  LNILIRKGELICGNLTKGTIGSSSGGMIHIIWKEKGPYCCRDFLSNTQLIINNWLHQNGF 564

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            ++G+ D IA  + ++ I D+++K K +V  + ++AQ   L+ +PG++MMESFE  VNQ L
Sbjct: 565  TVGVQDIIAKKEIVQKIRDSMTKFKRDVTKIQQKAQLGKLKSQPGKSMMESFEASVNQCL 624

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+ G+ A   LS  N LKAMV AGSKGS +NISQ+ ACVGQQNVEGKRIPFGF  R
Sbjct: 625  NKARDDCGNMALADLSSWNRLKAMVYAGSKGSNLNISQIMACVGQQNVEGKRIPFGFYKR 684

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            +LPHF+KDD+GPES+GFVEN YL GLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRL+
Sbjct: 685  SLPHFSKDDFGPESKGFVENCYLNGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLI 744

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF--- 907
            KA+ED+MVKYDGTVR S   +IQFLYGEDGM    IE  T++ LKMK ++     +F   
Sbjct: 745  KALEDVMVKYDGTVRTSKEQIIQFLYGEDGMAGEHIEDLTINLLKMKNTDVQNKCKFLHK 804

Query: 908  ------EMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDS 961
                  + + E     +M +EY + +    E+    + E +++  DR  L   I  S + 
Sbjct: 805  PKPNMSDNELEQHLSKFMDREYAERIIRDPEICLQLENEYKQIIQDRDDLRFTILKSQED 864

Query: 962  SWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG----EDPLSV 1017
            +  L VN+ R+IWNA++ F + P + S++ P  V+  +  L + L  +PG    +DPL +
Sbjct: 865  AVHLAVNVPRIIWNAKEQFSIRPNQKSNLEPTYVLSRLQNLMDDLAPIPGVMIHKDPLIL 924

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EA  ++T  F I LRS   SK V+++ RL+++AF W++GEI+SRF Q+LV PGEM+G + 
Sbjct: 925  EANSDSTWLFKIYLRSLLNSKAVIQQERLSKDAFNWILGEIKSRFDQALVNPGEMVGSIG 984

Query: 1078 AQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTK 1137
            AQS+GEPATQMTLNTFH+AGVSAKNVTLGVPRL+EIINVAK IKTPS+ +FLK      +
Sbjct: 985  AQSMGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEIINVAKNIKTPSMKIFLKDKDKQDE 1044

Query: 1138 ERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISP 1197
              A  +   +E+TTL  V +++ ++YDPDP  TI+ ED E ++ Y E+   +    + SP
Sbjct: 1045 RIATIIGGRIEHTTLCHVVKSSAIYYDPDPERTIVREDEELIRLYNEVRLFETERRRTSP 1104

Query: 1198 WLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKG 1257
            W+LR EL+ + +  K LSM  + +KIN  F D +  + +D+NA+KL+LR+R+ + E    
Sbjct: 1105 WVLRFELDNDKVQFKDLSMQLIEQKINDIFRDQIDVVKSDENAEKLVLRLRVNDIED--- 1161

Query: 1258 ELNDESAEDDVFLKKIESNMLTEMALRG-------------------------------- 1285
              ++E     ++LK  +  +  ++AL+G                                
Sbjct: 1162 --DEEDRTVCMYLKGFQDELFNDLALKGLHEISKVTFTKYNDEIFDVETGECKQDKECWL 1219

Query: 1286 -----VNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNY 1340
                 V L  V+  E ++ ++T SN +IEI+ VLGIEAVR +L++ELR V+S  G YVNY
Sbjct: 1220 IETDGVALQKVLGLEGINYKKTVSNDIIEILRVLGIEAVRMSLINELRFVLSSYGIYVNY 1279

Query: 1341 RHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVT 1400
            RHL+ LCD MT RG L AITRHGINR D+ P+ +CSFEETV+ILL+AAVFAE+D L+G+T
Sbjct: 1280 RHLSTLCDVMTQRGILTAITRHGINRVDSSPLRKCSFEETVEILLEAAVFAETDPLKGIT 1339

Query: 1401 ENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGM 1460
            ENI++GQLAP GTG   + ++ ++L+     Q+    E    G TP +  +S     +G+
Sbjct: 1340 ENIIMGQLAPFGTGCFEITIDPQVLQE--NAQIKPEEEDYIGGFTPIQDEMSNG---NGL 1394

Query: 1461 MSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 1520
               G + +P +  +P  D       GG +     +PG   S   +SPS   YSP   GY+
Sbjct: 1395 EMYG-INTPLVMNTPHND------YGGASTHSMWTPGNQGS---FSPSPGVYSP---GYA 1441

Query: 1521 PTSPGYSPTSPGYSPTSPTYSPSSPGYSPT-SPAYSPT-SPSYSPT--SPSYSPTSPSYS 1576
              SPGY   SPG           SP Y    SP Y+   SP Y  T   P  SPT    +
Sbjct: 1442 -QSPGY--MSPGQQFMG------SPNYRAVQSPIYNAIQSPIYHATEGGPGRSPTG---N 1489

Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
              SP YSPT+ + +  SPSY      Y+  SP Y  T  A S  SP YS T  S+   SP
Sbjct: 1490 QASPIYSPTTQN-NRMSPSY------YNSVSPGYYRTPGASS--SPVYSQTLGSHQ--SP 1538

Query: 1637 SYSPT----SPSYSPTSPS----YSPTSPSYSPTSPAYSPTSPGYSPT-SPSYSPTSPTY 1687
            SYSPT    S SYSPT+ S    Y      YS +SP YSPT+P Y+   SPSYSPTS   
Sbjct: 1539 SYSPTQNQGSGSYSPTNQSKIHIYQHQPLDYS-SSPHYSPTTPAYNQHYSPSYSPTSNVV 1597

Query: 1688 SP---TSPSYN-PQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
                  +P Y   QS++Y+   A+   SP  + +  Y PTSP Y+PT      TSPSY+ 
Sbjct: 1598 GSGLNQTPRYQVNQSSRYAMDSAHQSGSPGNASSGLYVPTSPAYNPT------TSPSYNN 1651

Query: 1744 SS-----PTYSPSSP 1753
             S     PTY   SP
Sbjct: 1652 MSSRQNNPTYGGGSP 1666



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/203 (35%), Positives = 97/203 (47%), Gaps = 33/203 (16%)

Query: 1630 SYSPTSPSYSP---TSPSY-SPT-----SPSYSPT-SPSYSPT-SPAYSPT--SPGYSPT 1676
            S+SP+   YSP    SP Y SP      SP+Y    SP Y+   SP Y  T   PG SPT
Sbjct: 1428 SFSPSPGVYSPGYAQSPGYMSPGQQFMGSPNYRAVQSPIYNAIQSPIYHATEGGPGRSPT 1487

Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSP 1736
                +  SP YSPT+     Q+ + SPS  Y+  SP     +P + +SP YS T  S+  
Sbjct: 1488 G---NQASPIYSPTT-----QNNRMSPSY-YNSVSPGYY-RTPGASSSPVYSQTLGSHQ- 1536

Query: 1737 TSPSYSPS----SPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYT 1792
             SPSYSP+    S +YSP++          Y      YS S  YSP+ P Y+   +  Y+
Sbjct: 1537 -SPSYSPTQNQGSGSYSPTNQSKIH----IYQHQPLDYSSSPHYSPTTPAYNQHYSPSYS 1591

Query: 1793 PQTNRDDSTTKDDKNTKGDKSSR 1815
            P +N   S        + ++SSR
Sbjct: 1592 PTSNVVGSGLNQTPRYQVNQSSR 1614


>gi|47214041|emb|CAG00699.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1745

 Score = 1443 bits (3736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 768/1479 (51%), Positives = 974/1479 (65%), Gaps = 222/1479 (15%)

Query: 169  GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDED 228
            GGCG  QP++   G+++ AE+K     N+D +      E+K  L+ ERV  + KRISDE+
Sbjct: 3    GGCGRYQPRIRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEE 53

Query: 229  CQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRR 278
              +LG++PK+ARP+WMI+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR
Sbjct: 54   DMILGMDPKFARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRR 113

Query: 279  QERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRG 338
             E++GA AH+I+E  +LLQFH+AT  DNELPG PRA Q+SGRP+KSI  RLK KEGR+RG
Sbjct: 114  NEQSGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRG 173

Query: 339  NLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHP 398
            NLMGKRVDFSARTVITPDP + IDQ+GVP SIA N+T+PE VTP+NI+RL+ELV  G   
Sbjct: 174  NLMGKRVDFSARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQ 233

Query: 399  PPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVER---HLNDGDFVLFNRQPSLHK 455
             PG   AKYIIRD+G R+DLR+  K SD HL++GYK      H+ DGD V+FNRQP+LHK
Sbjct: 234  YPG---AKYIIRDNGDRIDLRFHPKPSDLHLQIGYKASSKALHMCDGDIVIFNRQPTLHK 290

Query: 456  MSIMGHRIKIMPYSTFRLNL---------------------------------------- 475
            MS+MGHR++I+P+STFRLNL                                        
Sbjct: 291  MSMMGHRVRILPWSTFRLNLRYRLKQGRADAKAQGKPLIEFPVCRINALAQSSRYCMYFP 350

Query: 476  ----SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
                SVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL
Sbjct: 351  DFCFSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL 410

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
               RK TKRD F+++   MN+LM+   +DGK+PQP ILKPR LWTGKQ+F+LIIP  IN+
Sbjct: 411  TAVRKFTKRDVFLDRGEVMNLLMFLSTWDGKMPQPAILKPRALWTGKQIFSLIIPGHINV 470

Query: 592  FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             RT + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G 
Sbjct: 471  IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH 530

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            D  R F  + Q +VN WLL    SIGIGD+IADAKT   I +TI KAK +V  +I++A +
Sbjct: 531  DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN 590

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV AGSKGS INIS
Sbjct: 591  NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS 650

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+ A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMG
Sbjct: 651  QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG 710

Query: 828  GREGLIDTAVKTSETG------YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            GREGLIDTAVKT+ETG      YIQRRL+K+ME +MVKYDGTVRNS+  V+Q  YGEDG+
Sbjct: 711  GREGLIDTAVKTAETGKFVCRRYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGL 770

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
                +E Q L +LK     F+K F+F+   E      + ++ + D+ T   ++   + E 
Sbjct: 771  AGENVEFQNLATLKPSHRAFEKKFKFDCTNERALRRTLQEDVVKDVMTNAHVQSSLEREF 830

Query: 942  QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV-- 999
            +K++ DR ++   I  +GDS   LP NL R+IWNAQK F+++ R P+D+ P+ VVE +  
Sbjct: 831  EKMKEDR-EILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLSPLRVVEGILS 889

Query: 1000 ---------------------------------DKLQERLKVVPGEDPLSVEAQKNATLF 1026
                                              +L ++L +V G+DPLS +AQ+NATL 
Sbjct: 890  SVSLNEICCSPPFTLNISIADIQFEHVFGLSGTHELSKKLVIVNGDDPLSRQAQQNATLL 949

Query: 1027 FNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1086
            FNI LRST  SKR+ +E RL+ EAF+W++GEIE++F QS+  PGEM+G +AAQS+GEPAT
Sbjct: 950  FNIHLRSTLCSKRMTEEFRLSTEAFDWLLGEIETKFNQSIAHPGEMVGALAAQSLGEPAT 1009

Query: 1087 QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCA 1146
            QMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTPSL+VFL        ERAK++ C 
Sbjct: 1010 QMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCR 1069

Query: 1147 LEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNR 1206
            LE+TTLR VT  T ++YDP+P  T++EED E+V  YYEMPD D+   +ISPWLLRIEL+R
Sbjct: 1070 LEHTTLRKVTANTAIYYDPNPQNTVVEEDQEWVNVYYEMPDFDVT--RISPWLLRIELDR 1127

Query: 1207 EMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESA-- 1264
            + M D +                       D  AD    + RIMN +  K + ++E    
Sbjct: 1128 KHMTDSQ----------------------TDHGADCREDQCRIMNSDEYKFQEDEEVVDK 1165

Query: 1265 -EDDVFLKKIESNMLTEMALR--------------------------------------- 1284
             +DDVFL+ IESNMLT+M L+                                       
Sbjct: 1166 MDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILET 1225

Query: 1285 -GVNLLAVMCHEDVDARRTTSNHLIEI--------------------------IEVLGIE 1317
             GV+L+ V+  +DVD  RTTSN ++EI                           +VLGIE
Sbjct: 1226 DGVSLMRVLSEKDVDPVRTTSNDIVEIFTVIQSLSCLIGLRELFDGDRVPSSGFQVLGIE 1285

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            AVR+AL  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHGINR DTGP+M+CSF
Sbjct: 1286 AVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSF 1345

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPS 1435
            EETVD+L++A+   E D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E+   +P 
Sbjct: 1346 EETVDVLMEASSHGECDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPG 1405

Query: 1436 Y----MEGLEFGMTPARSPVSG-----TPYHDGMMSPGY 1465
                   G+ FG  P  SP+SG     TP++ G  +P Y
Sbjct: 1406 ISVAGSTGMFFGSAP--SPMSGMSPAMTPWNTG-ATPAY 1441


>gi|207347072|gb|EDZ73379.1| YDL140Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1578

 Score = 1440 bits (3728), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 752/1417 (53%), Positives = 987/1417 (69%), Gaps = 82/1417 (5%)

Query: 167  NKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISD 226
            ++GGCG  QP +  +G+K++  +K  R   D  E  PE     + L+ E +L + K IS 
Sbjct: 8    SRGGCGNTQPTIRKDGLKLVGSWKKDRATGDADE--PEL----RVLSTEEILNIFKHISV 61

Query: 227  EDCQLLGLNPKYARPDWMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENL 276
            +D   LG N  ++RP+WMIL  LP+PPPPV          R  DDLT +LA I++ N +L
Sbjct: 62   KDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISL 121

Query: 277  RRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRI 336
               E NGAP H I E   LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRI
Sbjct: 122  ETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRI 181

Query: 337  RGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGP 396
            RGNLMGKRVDFSARTVI+ DP + +DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP
Sbjct: 182  RGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGP 241

Query: 397  HPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKM 456
            +  PG   AKY+IRD G R+DLRY K++ D  L+ G+KVERH+ D D VLFNRQPSLHKM
Sbjct: 242  NEHPG---AKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKM 298

Query: 457  SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 516
            S+M HR+K++PYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L  VP  IVS
Sbjct: 299  SMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVS 358

Query: 517  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWT 576
            PQSN+P MGIVQDTL G RK+T RDTFIE D  +N+L W  D+DG +P P I+KP+PLW+
Sbjct: 359  PQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWS 418

Query: 577  GKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGS 636
            GKQ+ ++ IP  I+L R      D    +L+  D  + I  G+++ G + KKT+G+S G 
Sbjct: 419  GKQILSVAIPNGIHLQR-----FDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGG 473

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            LIHV+  E GP    K  G+ Q +VN+WLL N FS GIGDTIAD  TM  I +TI++AK 
Sbjct: 474  LIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKK 533

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
             V ++ K+AQ   L  + G T+ ESFE+ V + LN ARD+AG  A+ +L + NN+K MV 
Sbjct: 534  KVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVM 593

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
            AGSKGSFINI+QM+ACVGQQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGL
Sbjct: 594  AGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGL 653

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
            TPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+Y
Sbjct: 654  TPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIY 713

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM--DEENWNPNYML--QEYIDDLKTIKE 932
            GEDGMD+  IE Q+LD++    + F+K +R ++   +   +P+ +    E + DLK    
Sbjct: 714  GEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLK---- 769

Query: 933  LRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHP 992
            L+ + D E ++L  DR +   E+   G+++WPLPVN++R+I NAQ+TF +D  +PSD+  
Sbjct: 770  LQVLLDEEYKQLVKDR-KFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTI 828

Query: 993  MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1052
             ++V  V  LQE L V+ G++ +   AQ++A   F  LLRS  A++RVL+E+RLT++AF+
Sbjct: 829  KDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFD 888

Query: 1053 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1112
            WV+  IE++FL+S+V PGEM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+E
Sbjct: 889  WVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKE 948

Query: 1113 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1172
            I+NVAK +KTPSL+V+L+PG  + +E+AK ++ A+E+TTL+SVT A+E++YDPDP  T+I
Sbjct: 949  ILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVI 1008

Query: 1173 EEDVEFVKSYYEMPDEDIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDD 1230
             ED E ++ ++ + DE+     ++ SPWLLR+EL+R  M DK L+M  V E+I Q F +D
Sbjct: 1009 PEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKND 1068

Query: 1231 LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------ 1284
            L  I+++DN +KLI+R R++    PK    +  AE+D  LKKIE+ ML  + LR      
Sbjct: 1069 LFVIWSEDNDEKLIIRCRVVR---PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIE 1125

Query: 1285 -----------------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLG 1315
                                         GVNL  VM    +D  R  +N  I+I+EVLG
Sbjct: 1126 RVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLG 1185

Query: 1316 IEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRC 1375
            IEA R AL  E+  VI+ DGSYVNYRH+A+L D MT +G L ++TRHG NR++TG +MRC
Sbjct: 1186 IEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRC 1245

Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLP 1434
            SFEETV+IL +A   AE D  RGV+EN++LGQ+APIGTG   + +++E ++K   E ++ 
Sbjct: 1246 SFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKIT 1305

Query: 1435 SYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQ---FSPYVG---GM 1488
               +G + G+TP  S  SG    D  +    +FSP L  S   DA    F+ Y G   G 
Sbjct: 1306 EIEDGQDGGVTPY-SNESGLVNADLDVKDELMFSP-LVDSGSNDAMAGGFTAYGGADYGE 1363

Query: 1489 AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPG 1525
            A SP  + G +P+SPG+  SSPG+SPTSP YSPTSP 
Sbjct: 1364 ATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPA 1400



 Score = 43.9 bits (102), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 23/27 (85%)

Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
            +PTSP +  +SP +SPTSP+YSPTSPA
Sbjct: 1374 APTSPGFGVSSPGFSPTSPTYSPTSPA 1400



 Score = 43.9 bits (102), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 18/27 (66%), Positives = 22/27 (81%)

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
            +PTSP +  +SP +SPTSP YSPTSPA
Sbjct: 1374 APTSPGFGVSSPGFSPTSPTYSPTSPA 1400



 Score = 42.0 bits (97), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/27 (62%), Positives = 21/27 (77%)

Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
            +PTSP +  +SP +SPTSP YSPTSP 
Sbjct: 1374 APTSPGFGVSSPGFSPTSPTYSPTSPA 1400



 Score = 41.2 bits (95), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 22/64 (34%)

Query: 1652 YSPTSPSYS------------------PTSP--AY--SPTSPGYSPTSPSYSPTSPTYSP 1689
            +SP   S S                   TSP  AY  +PTSPG+  +SP +SPTSPTYSP
Sbjct: 1337 FSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSP 1396

Query: 1690 TSPS 1693
            TSP+
Sbjct: 1397 TSPA 1400


>gi|321459276|gb|EFX70331.1| hypothetical protein DAPPUDRAFT_328199 [Daphnia pulex]
          Length = 1457

 Score = 1436 bits (3717), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 735/1472 (49%), Positives = 996/1472 (67%), Gaps = 95/1472 (6%)

Query: 12   VAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
            + +V+ +Q GILSP EIR+MSV +  I++ E  E GKPK GGL DPR G I +   C+TC
Sbjct: 15   IRQVKRIQLGILSPKEIRKMSVTEGGIKYPEIYEGGKPKLGGLMDPRQGAIHQSASCQTC 74

Query: 70   TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR- 128
              NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+ L I  
Sbjct: 75   DRNMNECPGHFGHIDLAKPIFHIGFLMKTIKILRCVCFYCSKLLVSPSNPKIKKILVISK 134

Query: 129  -NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIA 187
              P+ R+  + D CK    CE   +I+  G            GCG  QPK+  +G+++I 
Sbjct: 135  GQPRTRMALVHDLCKGINICE--IDIETTGH----------VGCGRYQPKIRRQGLELIG 182

Query: 188  EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQ 247
            E+K      D+  Q     E    LTA RV  + K ISDEDC +LG++PKYARPDWMI+ 
Sbjct: 183  EWK----HVDEDWQ-----ETNLVLTAGRVWEIFKHISDEDCLILGMDPKYARPDWMIIT 233

Query: 248  VLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
             LP+ PP VRP+          +DLT +LA +++ NE L R  ++GA AHII+E  +LLQ
Sbjct: 234  CLPVSPPAVRPAVVMHGSASKQNDLTRKLADVVKANEELLRNVQSGAAAHIIAENIELLQ 293

Query: 298  FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
            FH+AT   N+L G P A   SGRPI SI +RL+ ++GRIRGNLMGKRVDFSARTVITPDP
Sbjct: 294  FHVATMMINDLEGLPVAQLESGRPIVSIKARLEGRDGRIRGNLMGKRVDFSARTVITPDP 353

Query: 358  TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
             + IDQ+GVP SIA N+T+PE VT +NIE+++ELV+ G        GAKY+ R++G R D
Sbjct: 354  NLRIDQVGVPRSIAQNITFPEIVTSFNIEKMQELVQQG--------GAKYLTRENGNRFD 405

Query: 418  LRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 477
            +R +K+     L+LG KVER + DGD V+ NRQPS+ K+++ G+R+K++P+++FRLN   
Sbjct: 406  IRTVKEYP--VLKLGDKVERSIRDGDLVVCNRQPSVQKVAMTGNRVKVLPWASFRLNPCC 463

Query: 478  TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
            T P+N     DEMN+HVPQS ETRAEV  +++ P+ I++PQ+N+PVMGIVQDTL+G  K+
Sbjct: 464  TYPFNKYLYSDEMNIHVPQSMETRAEVENILLTPRQIITPQANKPVMGIVQDTLVGTYKL 523

Query: 538  TKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAW 597
            TKRD F+EK+  MN+LM+   +DGK+P+P ILKPRPLWTGKQ+F LIIP  +N+  T + 
Sbjct: 524  TKRDVFLEKEQMMNLLMFLPTWDGKMPKPAILKPRPLWTGKQLFTLIIPGNVNMMITHST 583

Query: 598  HADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
            H D+ D+G    ++ GDT V IE GEL+ G LCKKTLG S  SL+H+I+ E+G +   +F
Sbjct: 584  HPDDEDEGPYKWISPGDTKVMIENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRF 643

Query: 654  LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
             G+ Q ++N WLL    SIGIGD + D +T   I  TI KAK +V  +I+++++  LEP 
Sbjct: 644  YGNIQTVINNWLLYEGHSIGIGDMLVDRQTYMDIQATIEKAKEDVIEVIQKSRNDELEPT 703

Query: 714  PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
            PG T+ ++ EN+VN++L  AR+E G SA+ SL+E NNLKAMV AGS GS +NISQ+ ACV
Sbjct: 704  PGNTLQQTLENQVNRILIDARNETGGSAKNSLTEFNNLKAMVVAGSSGSNVNISQVIACV 763

Query: 774  GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
            GQQNVEGKRIPFGF  RTLPHF KDD+GPESRGFVENSY+ GLTP EF+FHAM  R+ LI
Sbjct: 764  GQQNVEGKRIPFGFRKRTLPHFIKDDFGPESRGFVENSYVSGLTPSEFYFHAMD-RKALI 822

Query: 834  DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDS 893
            DTAVKT+ TGYIQR L+KAME +MV YDGTVRNS G ++QF YG DG+ +  +E Q + +
Sbjct: 823  DTAVKTANTGYIQRSLIKAMESVMVHYDGTVRNSAGRILQFSYGGDGLSAESVELQKMPT 882

Query: 894  LKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLAT 953
            + +    F+K F+F+   EN+      +E   +L +  E+    + E ++L  DR  L  
Sbjct: 883  VNLSNEAFEKKFKFDPSNENYVRRIFNEEITRELISSAEVITEIEHEWEQLYKDREAL-R 941

Query: 954  EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
            +I  +G++   LP NL+R+IW+ QK F ++ R P+D+ P+ V++ V  L  +  +V GED
Sbjct: 942  QIFPTGENKVVLPCNLQRMIWDVQKIFHINKRAPTDLSPLRVIQGVRDLLAKCVIVVGED 1001

Query: 1014 PLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
             LS++A +NATL F  L+RST  SKR+ +++RL+ EAFEW+IG+IE+RF Q+   PGEM+
Sbjct: 1002 KLSIQANQNATLLFQCLVRSTLCSKRIAEKYRLSSEAFEWLIGKIETRFQQAQAQPGEMV 1061

Query: 1074 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGV 1133
            G +AAQS+GE  T+MT+NTFH+AGVS+KNVTLGV RL+EIIN++K  KTPS++VFLK   
Sbjct: 1062 GALAAQSLGERPTKMTVNTFHFAGVSSKNVTLGVARLKEIINISKSPKTPSMTVFLKGQA 1121

Query: 1134 NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE 1193
                E+AKNV C LE+TTLR VT+ T ++YDPDP+ T+I ED EFV  YY+ P  D    
Sbjct: 1122 ARDAEKAKNVLCRLEHTTLRMVTKNTAIYYDPDPLNTVILEDQEFVNVYYQRPHFDPTRI 1181

Query: 1194 KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDE 1253
             ISPWLLRIEL+R+ M DK+L+M  +AEK+N EF + L  IF++D+A+KL+LRIRI+ D 
Sbjct: 1182 SISPWLLRIELDRKRMTDKRLTMKQIAEKVNAEFGNSLKIIFSNDSAEKLVLRIRIIMDS 1241

Query: 1254 APKGELNDESA--EDDVFLKKIESNMLTEMALRGV------------------------- 1286
                +  ++ A  EDD+FL+  E+NML++M L+G+                         
Sbjct: 1242 DDSSDEEEQVAKMEDDIFLRCFEANMLSDMTLQGMESIEKVSMYLPKTDEKKRIVVTETG 1301

Query: 1287 ---------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
                            L+ V+   DVD  RT SN + EI  VLG+EA R+AL  E+  ++
Sbjct: 1302 EFEAIAEWILETDGTQLMRVLSERDVDPVRTYSNDIREIFSVLGVEAARKALEKEMNNLL 1361

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
             F G  VN+RHLA+LCD MT  G LM I+   I+R DT  +M+C+ +ETV +LL+AA  A
Sbjct: 1362 QFYGLNVNHRHLALLCDVMTATGQLMPIS--SIDRQDTSALMKCTVKETVSVLLEAAGHA 1419

Query: 1392 ESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE 1423
            E D LRGV+ N++LGQL  +GTG   L L+ E
Sbjct: 1420 EIDPLRGVSVNLILGQLPRMGTGCFDLILDAE 1451


>gi|169616762|ref|XP_001801796.1| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]
 gi|160703256|gb|EAT81264.2| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]
          Length = 1720

 Score = 1431 bits (3705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 746/1497 (49%), Positives = 1006/1497 (67%), Gaps = 111/1497 (7%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ +QFG+LSP+EI+ MSV QI   ET +    KP+  GL+DPRLGTIDR   C TC  +
Sbjct: 16   IKEIQFGLLSPEEIKAMSVCQIMFPETMDESNTKPREHGLNDPRLGTIDRMYSCATCKED 75

Query: 73   MAECPGHFGHLELAKPMFHI-------GFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            +  CPGHFGH+ELA P+FH+       GF+  +  I+ +VC NC  I AD +   +  A+
Sbjct: 76   IQVCPGHFGHIELATPVFHVFMVLTALGFVVKIKKILETVCHNCGLITADYNHPDWANAI 135

Query: 126  KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQD-GEEPLKKN----KGGCGAQQPK-LT 179
            + ++ K R  KI    + K  CE         QD GEE  KK      GGCG   P  + 
Sbjct: 136  RTKDAKKRFDKIWRMSRTKKNCE---------QDTGEEDPKKAPKIPHGGCGNTNPDTIR 186

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
             EG+K+ A YK ++ ++ D +      +RK+ LT +  L V K +SD    LLGLN  YA
Sbjct: 187  KEGVKLTATYKPKKGEDSDGQG-----DRKEVLTPQHALNVFKLLSDNTLALLGLNADYA 241

Query: 240  RPDWMILQVLPIPPPP-------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
            RP+WMI+ VLP+PPPP             +R  DDLT++L  IIR N+ ++     GAP 
Sbjct: 242  RPEWMIMTVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANQRVQECISEGAPQ 301

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            HI++EF  L+Q+H+ATY DN+  G P + Q+SGRP+K+I  RLK KEGR+RGNLMGKRVD
Sbjct: 302  HILNEFEALVQYHVATYMDNDANGIPPSNQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVD 361

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP +++DQ+GVP SIA  LTYPE VT +NI +L  LV  GP+  PG   A 
Sbjct: 362  FSARTVITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTSLVRNGPNQHPG---AN 418

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            Y+I+ DG RLDL++ K   D  L+ G+KVERH++D D ++FNRQPSLHK S+MGHR+K+M
Sbjct: 419  YVIKSDGVRLDLKHNKNLDDLRLQYGWKVERHIDDDDVIIFNRQPSLHKESMMGHRVKVM 478

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            PYSTFR+NLSVTSPYNADFDGDEMN+HVPQS ETRAE+  L MVPK IVSPQ N+P+MGI
Sbjct: 479  PYSTFRMNLSVTSPYNADFDGDEMNLHVPQSDETRAEIQNLCMVPKQIVSPQKNQPLMGI 538

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDTLLG  K+++RD F+  +  M I+MW  D+DG VP+P ILKPRPLWTGKQ+ ++  P
Sbjct: 539  VQDTLLGVYKMSRRDNFLPIEQVMCIMMWVPDWDGIVPEPAILKPRPLWTGKQIISMAFP 598

Query: 587  KQINLFRTAA------WHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHV 640
            K++N++R+        W+   DK +L  G        GELL G++ KK +G + G +IH+
Sbjct: 599  KEVNIWRSDGDSKPSPWNDFQDKSLLIKG--------GELLLGSVTKKIVGATAGGVIHI 650

Query: 641  IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKN 700
            I+ E+    A KF    Q +VN+WLL + FS+GIGDT+ D +T   I   ++KAK  V+ 
Sbjct: 651  IFNELSSGEAVKFFNSCQRIVNWWLLHHGFSLGIGDTVPDPETAAKIASEVAKAKAKVEE 710

Query: 701  LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760
            ++ +A    LEP PG T+  +FE+KV + LN  R+  G++AQ SL + NN+   V +GSK
Sbjct: 711  IVLEATRDELEPLPGMTIRGTFESKVQKYLNEGREGGGTAAQNSLKDFNNVVQTVISGSK 770

Query: 761  GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 820
            GS +NISQM + VGQQ VEG+RIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP E
Sbjct: 771  GSTVNISQMVSLVGQQAVEGQRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPAE 830

Query: 821  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 880
            FFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+MVKYDGTVRNSLGD+I+F+YGEDG
Sbjct: 831  FFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIIEFIYGEDG 890

Query: 881  MDSVWIESQTLDSLKMKKSEFDKAFRFEM--DEENWNPNYML---QEYIDDLKTIKELRD 935
            +D  +IE+Q +D + + +++F+K F+ ++   +    P   L    E+  D+   + L +
Sbjct: 891  LDGGFIENQKIDMITLSEAKFEKVFKVDVLGTDAPQIPTSKLAGANEFQGDVDIQRHLDE 950

Query: 936  VFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDP-RRPSDMHPME 994
             FD    +++ DR  L T I       + LP+N+ R+I +AQ  F +   +  SD+HP E
Sbjct: 951  EFD----QIKIDREYLRTVIGQDDSQQFQLPLNIARMIESAQMRFGIKKGQNVSDLHPTE 1006

Query: 995  VVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWV 1054
            VV  V  L + L V+ G DPLSVEAQ +AT  F   LRS  A KRV+ E  L+++A +++
Sbjct: 1007 VVCQVRDLLDSLVVIRGNDPLSVEAQASATYLFKCHLRSRLAFKRVVVEESLSKKALDYI 1066

Query: 1055 IGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII 1114
            +GE++ RFL++ VAPGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+
Sbjct: 1067 LGELQDRFLKAAVAPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIL 1126

Query: 1115 NVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEE 1174
            N+A  IKTPS+ V  +   N+ ++ AK ++  +E TTLRS+T++ E++YDP+   T++E 
Sbjct: 1127 NIAANIKTPSMLV-RQTDKNAGQQEAKVLRSRIELTTLRSLTQSVELYYDPEIQATLVES 1185

Query: 1175 DVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCI 1234
            D + V+SY+ +P+E+   E  S W+LR+ L+R+ ++DK + ++ VA  I +EF  +L  I
Sbjct: 1186 DQDMVESYFIVPEENEVIESQSKWVLRVILDRKKLLDKNIGISEVAGTIKREFSPNLAVI 1245

Query: 1235 FNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-------- 1286
            F+D+NAD+ ++R+R + D   K +  DE   D+ +++K+E+++L  + LRG+        
Sbjct: 1246 FSDENADEQVMRVRFIWDGNLKQDDEDEDERDERWMRKLETHLLDGVVLRGLKGVERAFI 1305

Query: 1287 ---------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEV 1313
                                             +L  V+  E VD  +T SN  IEI+ V
Sbjct: 1306 REDNVVVMNEDRSLVLSKSDPRCKEWVLDTTGTSLAEVLAVEGVDGTKTYSNSFIEILGV 1365

Query: 1314 LGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMM 1373
            LGIEA R  LL EL +V+SFDGSYVN+RH+A+L D MT RG LMAITRHGINRNDTG +M
Sbjct: 1366 LGIEAARAGLLHELGMVLSFDGSYVNHRHMALLVDIMTQRGMLMAITRHGINRNDTGALM 1425

Query: 1374 RCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIE 1430
            RCSFEETV+ILL+AA F E D  RGV+ENIMLGQLAP+GTG+  + ++  ML   +E
Sbjct: 1426 RCSFEETVEILLEAAGFGELDDCRGVSENIMLGQLAPMGTGEFDVVMDSSMLLTMVE 1482


>gi|4092885|gb|AAD12605.1| RNA polymerase II largest subunit [Antonospora locustae]
          Length = 1553

 Score = 1421 bits (3678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 771/1674 (46%), Positives = 1043/1674 (62%), Gaps = 211/1674 (12%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANM 73
            +V+ +QFG+ SP+EIR  SV  I + ET E G PK  GL D R+GT +R   C TC  + 
Sbjct: 10   RVKAIQFGLFSPEEIRASSVALIRYPETLENGVPKESGLIDLRMGTTERDYLCATCNQDN 69

Query: 74   AECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNR 133
              C GHFGH+EL KPMFH+GF+  +  ++  VCF CSK+  +++          +  K++
Sbjct: 70   YVCAGHFGHIELVKPMFHVGFISRIKKVLECVCFYCSKVRINKNKTTIT-----KESKHK 124

Query: 134  LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQR 193
            L  I   CKNK  CE                      C  +QP +  EG+ + A  K + 
Sbjct: 125  LNFIWGICKNKMVCED---------------------CNNRQPVIKKEGLSLFAYMKGE- 162

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
                      E  E K  L  ERV  + K+I++ED + LG N KY+RP++MIL VL + P
Sbjct: 163  ----------ENNEGKVMLNGERVYNIFKKINNEDLEFLGFNIKYSRPEYMILSVLLVAP 212

Query: 254  PPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
            P VRPS          DDLT++ + II+ N+NL++ E  GAPAHII ++ QL+QFH+AT 
Sbjct: 213  PAVRPSIVMEGTLRGEDDLTYKYSDIIKSNQNLKKYEEEGAPAHIIRDYEQLVQFHVATL 272

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DNE+ GQP+A Q++GRP+K+I +RLK KEGR+RGNLMGKRVDFSAR+VIT DP I++++
Sbjct: 273  IDNEISGQPQALQKNGRPLKAISARLKGKEGRLRGNLMGKRVDFSARSVITADPNISLEE 332

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            LGVP  +A+  T+PE VT +N+ +L++LV  GP+  PG   A Y+IR DGQR+DL + + 
Sbjct: 333  LGVPMKVAMIHTFPERVTSFNLNKLRKLVSNGPNKYPG---ANYLIRRDGQRIDLNFSR- 388

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
              D  LE GY VERH+ +GD VLFNRQPSLHKMS+M H++K+M   TFRLNLS T+PYNA
Sbjct: 389  -GDVILEEGYVVERHMLNGDLVLFNRQPSLHKMSMMAHKVKVMDGLTFRLNLSATAPYNA 447

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+H+PQS+ ++AE+ ELM+V K I+SPQSN+PVMGI+QDTLLG  ++T +  F
Sbjct: 448  DFDGDEMNLHMPQSYNSKAELSELMLVSKHIISPQSNKPVMGIIQDTLLGVCRLTSKGVF 507

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            I+++ F N++           +P I +P+ L+TGKQ+F+L +PK +N FR        DK
Sbjct: 508  IKREEFCNLVYASNLVARANIKPAIARPKILYTGKQLFSLTLPK-LNFFR--------DK 558

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
                     V I  G LL+G +CKK++GT+ GSLIH+I  + G +   +F+   Q L++ 
Sbjct: 559  ---------VVIMDGVLLNGVICKKSVGTAQGSLIHIIANDYGHEEITRFIDSLQKLIST 609

Query: 664  WL-LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK-SLEPEPGRTMMES 721
            +L L + FS+GIGDTI+  +TM  I+  I  AK  VK LI  ++ + SLE  PG  + E+
Sbjct: 610  YLTLISTFSVGIGDTISSPETMAHISRAIGDAKAEVKQLIYDSRRRGSLEKLPGMNLQET 669

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
             E+K+N  LN ARD +G+ A +SL+  N LK M+ AGSKGS+INISQ+T+CVGQQN+E K
Sbjct: 670  LESKINLALNKARDISGTRAVESLNHLNGLKQMLKAGSKGSYINISQITSCVGQQNIESK 729

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF K+DYGPESRGFV NSYL GL P+EFFFHAMGGREGLIDTA KT+E
Sbjct: 730  RIPFGFRQRTLPHFVKNDYGPESRGFVTNSYLSGLNPEEFFFHAMGGREGLIDTACKTAE 789

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL------DSLK 895
            TGYIQRR+VKAMED  ++YDG+VR S   V QF+YGED  DS ++E+Q          +K
Sbjct: 790  TGYIQRRIVKAMEDARIEYDGSVRGS-STVYQFMYGEDNFDSTYLETQAFPVESRCSEIK 848

Query: 896  MKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEI 955
            +    F      E D                L+ I E  D     + +++A +Y      
Sbjct: 849  LSVCSFKLHGMLENDSA--------------LQAIMEKED----RIFEMDACKY------ 884

Query: 956  ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL----------QER 1005
               G   + LP N+ RL+  AQ+ +KV   + SD+ P  VV   + L          Q++
Sbjct: 885  ---GGRDYTLPFNIARLVATAQRDYKV---KVSDVDPYAVVRLKESLLDFVSQYYCMQKK 938

Query: 1006 L-------KVVPGEDPLSVEAQKNATL---------------FFNILLRSTFASKRVLKE 1043
            +       K    E     E      +               F +  +RS    K+V+  
Sbjct: 939  MYMHEKSPKTTLCEQHKETEVNSINVVDNALQSTSPNISEDSFVHAFIRSCLRIKKVIN- 997

Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
            +R++    EW+  EI+ +F++ +++  EM+G +AAQSIGEPATQMTLNTFHYAGV A+ +
Sbjct: 998  YRISTLGVEWIANEIKKKFVRGIISTNEMVGTLAAQSIGEPATQMTLNTFHYAGV-AQAI 1056

Query: 1104 TLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWY 1163
            T GVPRL+EIINVAK I+TPS  ++LKPG  ST E+AK V   +EY  +  V    ++ Y
Sbjct: 1057 TQGVPRLKEIINVAKNIRTPSHKIYLKPG--STIEQAKKVASEIEYINIEMVCSEIKIIY 1114

Query: 1164 DPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKI 1223
            DP    TII ED +FV++Y+E PDE ++ + ++PWLLR+ + R+ ++   L    +A+KI
Sbjct: 1115 DPKVDTTIINEDRDFVEAYFEFPDEYVSLDTLNPWLLRLVVARDRLISNNLDFEFIAQKI 1174

Query: 1224 NQEFDDDLTCIFNDDNADKLILRIRIM----NDEAPKGELNDESAEDDVFLKKIESNMLT 1279
             + F  D+  + +D NA++L++RIR++    N+E  +  LN       + LK I +N+  
Sbjct: 1175 KKVFHQDIFLLHSDANAEELVIRIRVLGMSANEEFYRRLLNTILG---IHLKGI-TNIRR 1230

Query: 1280 EMALR----------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
               LR          G NL  ++  ED+ A +   N L+E+ EVLGIEAVR  +L ELR 
Sbjct: 1231 IYLLREREEWILQTDGKNLKQLLLVEDILANKVYCNDLLEVYEVLGIEAVRECILRELRN 1290

Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
            VI  +GSYVN+RHL +LCD MT +G L  ITRHG NR  TG + RCSFEETV+ILL+A+ 
Sbjct: 1291 VIEAEGSYVNFRHLYLLCDVMTLKG-LRGITRHGANRAATGALKRCSFEETVEILLEASC 1349

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARS 1449
            FAE +Y RGVTENIMLGQLAPIGTG+    L+ + L++ I                    
Sbjct: 1350 FAERNYCRGVTENIMLGQLAPIGTGNTICILDKKALRSVI-------------------- 1389

Query: 1450 PVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSS 1509
                 P        G + +P +R SPV+D ++      + FSP ++ GY+    G +PS 
Sbjct: 1390 -----PVAKSFDFLGEVATPVIR-SPVSDVRYGS--SSVPFSPIAAHGYAA---GTTPSV 1438

Query: 1510 PGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYS 1569
                            YSPTSP YSPTSP YSP+SP YSPTSPAYSPTSP+YSPTSP+YS
Sbjct: 1439 ----------------YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYS 1482

Query: 1570 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
            PTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSP Y P++ A
Sbjct: 1483 PTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPVYRPSTRA 1536



 Score =  183 bits (465), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 91/120 (75%), Positives = 105/120 (87%), Gaps = 3/120 (2%)

Query: 1575 YSPTSPSYSPTSPS--YSPTSPS-YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY 1631
            Y  +S  +SP +     + T+PS YSPTSP+YSPTSPAYSPTSPAYSPTSPAYSPTSP+Y
Sbjct: 1415 YGSSSVPFSPIAAHGYAAGTTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1474

Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
            SPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSP YSPTSP+YSPTSP Y P++
Sbjct: 1475 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPVYRPST 1534



 Score =  183 bits (465), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 91/120 (75%), Positives = 109/120 (90%), Gaps = 3/120 (2%)

Query: 1533 YSPTSPTYSP-SSPGYSP-TSPA-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1589
            Y  +S  +SP ++ GY+  T+P+ YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+Y
Sbjct: 1415 YGSSSVPFSPIAAHGYAAGTTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1474

Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
            SPTSP+YSPTSP+YSPTSPAYSPTSPAYSPTSPAYSPTSP+YSPTSP+YSPTSP Y P++
Sbjct: 1475 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPVYRPST 1534



 Score =  183 bits (464), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/122 (74%), Positives = 107/122 (87%), Gaps = 3/122 (2%)

Query: 1547 YSPTSPAYSPTSPS--YSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1603
            Y  +S  +SP +     + T+PS YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+Y
Sbjct: 1415 YGSSSVPFSPIAAHGYAAGTTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1474

Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
            SPTSPAYSPTSPAYSPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP Y P++
Sbjct: 1475 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPVYRPST 1534

Query: 1664 PA 1665
             A
Sbjct: 1535 RA 1536



 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/120 (75%), Positives = 105/120 (87%), Gaps = 3/120 (2%)

Query: 1568 YSPTSPSYSPTSPS--YSPTSPS-YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1624
            Y  +S  +SP +     + T+PS YSPTSP+YSPTSP+YSPTSPAYSPTSPAYSPTSPAY
Sbjct: 1415 YGSSSVPFSPIAAHGYAAGTTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1474

Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
            SPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSP YSPTSP Y P++
Sbjct: 1475 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPVYRPST 1534



 Score =  182 bits (463), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/120 (75%), Positives = 106/120 (88%), Gaps = 3/120 (2%)

Query: 1561 YSPTSPSYSPTSPS--YSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1617
            Y  +S  +SP +     + T+PS YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSPAY
Sbjct: 1415 YGSSSVPFSPIAAHGYAAGTTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1474

Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 1677
            SPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSP Y P++
Sbjct: 1475 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPVYRPST 1534



 Score =  182 bits (461), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/120 (75%), Positives = 103/120 (85%), Gaps = 3/120 (2%)

Query: 1582 YSPTSPSYSPTSPS--YSPTSPS-YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1638
            Y  +S  +SP +     + T+PS YSPTSPAYSPTSPAYSPTSPAYSPTSP+YSPTSP+Y
Sbjct: 1415 YGSSSVPFSPIAAHGYAAGTTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1474

Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
            SPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP Y P +
Sbjct: 1475 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPVYRPST 1534



 Score =  179 bits (455), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 89/120 (74%), Positives = 105/120 (87%), Gaps = 3/120 (2%)

Query: 1526 YSPTSPGYSPTSPT--YSPSSPG-YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1582
            Y  +S  +SP +     + ++P  YSPTSPAYSPTSP+YSPTSP+YSPTSP+YSPTSP+Y
Sbjct: 1415 YGSSSVPFSPIAAHGYAAGTTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1474

Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
            SPTSP+YSPTSP+YSPTSP+YSPTSPAYSPTSPAYSPTSPAYSPTSP+YSPTSP Y P++
Sbjct: 1475 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPVYRPST 1534



 Score =  173 bits (439), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 86/119 (72%), Positives = 98/119 (82%), Gaps = 3/119 (2%)

Query: 1589 YSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1645
            Y  +S  +SP +    +   T   YSPTSPAYSPTSPAYSPTSP+YSPTSP+YSPTSP+Y
Sbjct: 1415 YGSSSVPFSPIAAHGYAAGTTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1474

Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            SPTSP+YSPTSP+YSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP+Y+P S  Y PS
Sbjct: 1475 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPVYRPS 1533



 Score =  155 bits (392), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/141 (61%), Positives = 103/141 (73%), Gaps = 23/141 (16%)

Query: 1604 SPTSPA-YSPTSPAYSP---------TSPA-YSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1652
            SP S   Y  +S  +SP         T+P+ YSPTSP+YSPTSP+YSPTSP+YSPTSP+Y
Sbjct: 1408 SPVSDVRYGSSSVPFSPIAAHGYAAGTTPSVYSPTSPAYSPTSPAYSPTSPAYSPTSPAY 1467

Query: 1653 SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSP 1712
            SPTSP+YSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP+Y+P S       AYSP+SP
Sbjct: 1468 SPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSP------AYSPTSP 1521

Query: 1713 RLSPASPYSPTSPNYSPTSSS 1733
                   YSPTSP Y P++ +
Sbjct: 1522 ------AYSPTSPVYRPSTRA 1536



 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/116 (53%), Positives = 84/116 (72%), Gaps = 7/116 (6%)

Query: 1680 YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTS 1738
            Y  +S  +SP +   +  +A  +PS+ YSP+SP  SP SP YSPTSP YSPTS +YSPTS
Sbjct: 1415 YGSSSVPFSPIAA--HGYAAGTTPSV-YSPTSPAYSPTSPAYSPTSPAYSPTSPAYSPTS 1471

Query: 1739 PSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQYTP 1793
            P+YSP+SP YSP+SP  +   +P YSP+SP YSP++  YSP++P YSP+S + Y+P
Sbjct: 1472 PAYSPTSPAYSPTSPAYS-PTSPAYSPTSPAYSPTSPAYSPTSPAYSPTSPA-YSP 1525


>gi|403346305|gb|EJY72545.1| hypothetical protein OXYTRI_06457 [Oxytricha trifallax]
          Length = 1886

 Score = 1420 bits (3675), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 815/1833 (44%), Positives = 1108/1833 (60%), Gaps = 181/1833 (9%)

Query: 3    TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGK-PKPGGLSDPRLGTID 61
            T+  +S  EV K   ++F +L  DEI + SVV I++    +    P   G++DPR+GT+D
Sbjct: 6    TKNTHSYIEVKKPSAIEFCLLDQDEILKSSVVSIKNERIYDVNMIPAFEGVNDPRMGTMD 65

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF 121
            R   C TC  +  +CPGHFGH+ELAKP++H G ++ +  I++ +CF+C K+L   +    
Sbjct: 66   RDRLCFTCKGSQVDCPGHFGHIELAKPVYHRGCLEYIKKILKCLCFSCGKLLYPREKDHV 125

Query: 122  KQALKIRNPKNRLKKILDACKNKT--KCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
             Q ++I++PK+R  +I+   +      CE  +                 GGCG +QPK+ 
Sbjct: 126  DQIMRIKSPKHRFMQIMKHHEKYVFRYCESQN-----------------GGCGMKQPKVL 168

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPE----PVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
             + + +  EY +     D+Q  +       VE+K  +  E V  +  +++ E+  LLG+ 
Sbjct: 169  KKSLALEVEYFS-----DNQHYMQNLGYNSVEQKAFIWPEEVQRIFSKMTTEEQNLLGI- 222

Query: 236  PKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAP 285
                +P  MI++ L + PPPVRPS          DDLT+    I+  N  L R    GA 
Sbjct: 223  ---KKPQNMIIKRLIVCPPPVRPSVSMGGPFKCEDDLTYSYQKILVTNNVLARDMDKGAN 279

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
               +++  + LQF++A   DNE PG P    +SG+P+K+I +RL+ KEGR+RGNLMGKRV
Sbjct: 280  LTTLNKLREQLQFYVAVLMDNECPGIPTHKHKSGKPLKAIRARLRGKEGRVRGNLMGKRV 339

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSAR+VITPDP + +DQLGVP +IA N+T PE VTP NI+ L+ LVE GPH  PG   A
Sbjct: 340  DFSARSVITPDPNLELDQLGVPMAIAQNVTIPEVVTPQNIDELRRLVENGPHRYPG---A 396

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KYIIR D +++D+  L + SD HLE GYKVERHL + D+VLFNRQPSLHKMSIMGHR KI
Sbjct: 397  KYIIRHDERQIDIGILNERSDVHLEYGYKVERHLRNDDYVLFNRQPSLHKMSIMGHRAKI 456

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            +P+STFRLNLSVTSPYNADFDGDEMNM VPQS+E+ AEV E+M VP  I+SPQSN+PVMG
Sbjct: 457  LPFSTFRLNLSVTSPYNADFDGDEMNMFVPQSYESMAEVKEIMAVPNQIISPQSNKPVMG 516

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV-PQPTILKPRPLWTGKQVFNLI 584
            IVQD+LLG    T++D FI+++  MN++MW   +  KV P P +LKP+PLWTGKQ+ +L+
Sbjct: 517  IVQDSLLGIMLFTRKDNFIDRNTAMNLMMWLGKYSDKVLPTPAVLKPKPLWTGKQILSLV 576

Query: 585  IPKQINL--FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            IP  +NL  F  A       +      +T+V I++G+L++G L K T G+S+  LIH+IW
Sbjct: 577  IP-DVNLTKFFEAPPKPPQRRNWCPTQETIVLIQRGQLITGHLNKATAGSSSQGLIHIIW 635

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
            +E GPD A++FL + Q +VN WL+++ F++G+ DTIA  KTM+ I+  +    N V  LI
Sbjct: 636  KECGPDGAKQFLSNAQNVVNQWLIEHGFTVGVQDTIASKKTMDGIHQKLQHYNNKVARLI 695

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
            ++A+   L  +PG+ MMESFE  VN  LN ARDEAG  A K L   N ++ MV AGSKG+
Sbjct: 696  QKAEQGKLTTQPGKNMMESFEYLVNNNLNQARDEAGQLAFKDLDPWNKIQNMVGAGSKGT 755

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
             INISQ+  CVGQQNVEGKR+ FGF  RTLPHF K DYGP S+GFV N+Y+ GL P EFF
Sbjct: 756  NINISQIMGCVGQQNVEGKRVQFGFKSRTLPHFPKHDYGPASKGFVINNYISGLDPPEFF 815

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAMGGREGLIDTAVKTSETGYIQRRLVKA+EDIMVKYDGTVRNS   VIQFLYGEDG+ 
Sbjct: 816  FHAMGGREGLIDTAVKTSETGYIQRRLVKALEDIMVKYDGTVRNSGEQVIQFLYGEDGIA 875

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRF--EMDEENWNPNYMLQEYIDDLKTIK----ELRDV 936
               IE   +D LKM   + +  + F  E        +Y+ Q   D + +I       +  
Sbjct: 876  GEHIEDLKIDLLKMSNQDVENKYGFIPERVSTAEAKDYLRQSMDDGMVSIIMDNPNHQMQ 935

Query: 937  FDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVV 996
             + E +++  DR +L T I  +GD    LP+N+KRL+ N    F +   R +D+ P+ VV
Sbjct: 936  LNKEKKQILLDRDELRTRILKNGDDQIHLPINMKRLLLNTHHQFNIKKNRITDLEPIYVV 995

Query: 997  EAVDKLQERLKVVPGE-----DPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAF 1051
              V  L + L V PG      D    EA +N+T    I LRS  +SK+++++ R T+ AF
Sbjct: 996  NQVQTLMDDLTVFPGRKYRANDTQFNEANENSTKLIKIYLRSELSSKKMIQQERFTKTAF 1055

Query: 1052 EWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLR 1111
            +++IGEI++RF  SLV PGEM+G +AA S+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+
Sbjct: 1056 DFLIGEIKARFESSLVHPGEMVGSIAAHSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLK 1115

Query: 1112 EIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTI 1171
            E+INV+K I TP +S++L+      ++    +Q  +E+T L  + E+T ++YDPDP  TI
Sbjct: 1116 EVINVSKNISTPMVSIYLQGQHKKNEKTVMQIQGLIEHTNLSHLVESTGIFYDPDPTKTI 1175

Query: 1172 IEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDL 1231
            I++D   V  Y  +PD + A +  SPW+LR+ L+   +  K ++M  + +K+   F D +
Sbjct: 1176 IKDDQALVDLYNLVPDLNNASKCPSPWVLRLRLDPNKLQSKDITMDFIDKKVQDTFGDFI 1235

Query: 1232 TCIFNDDNADKLILRIRI--MNDE-APKGELNDESAEDDVFLKKIESNMLTEMALR---- 1284
            + + +D NA   +LR+R   +NDE    GE   E+A   +FLK+IE+ +L E  L+    
Sbjct: 1236 SVMASDTNASINVLRLRFRDINDEDDADGESEQETAV--MFLKQIETQLLNEFTLKGIPE 1293

Query: 1285 ---------------------------------GVNLLAVMCHEDVDARRTTSNHLIEII 1311
                                             GV L  ++   +VD ++T SN ++EI+
Sbjct: 1294 ISKVYAKKYQEIEYDIKTGVFKQTSDNFMLETDGVALQKILSVNNVDYKKTVSNDILEIL 1353

Query: 1312 EVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP 1371
             VLGIEAVR +L++ELR V++F G YVNYRHL+ LCD M  RG L AITRHGINR D+GP
Sbjct: 1354 NVLGIEAVRMSLINELRAVLNFYGIYVNYRHLSTLCDVMCQRGKLTAITRHGINRMDSGP 1413

Query: 1372 MMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKN---- 1427
            + + SFEETV+ILL+AAV+ E+D+L+GVTE IMLGQLAP+GTG   + L++++++     
Sbjct: 1414 LRKASFEETVEILLEAAVYNETDHLKGVTEAIMLGQLAPLGTGSFDVVLDEKVIEEYSQQ 1473

Query: 1428 ------AIELQLPSYMEGLEFG---MTPARSP-VSGTPYHDGMMSPGYLFSPNLRLSPVT 1477
                   +++  P   +   FG   M   ++P V  TP H G M+  Y  +P        
Sbjct: 1474 QVGEEILVDIMTPLQDDDYYFGHIKMQHHQTPYVDTTPLHKGGMTSVYQQTP-------- 1525

Query: 1478 DAQFSPYVGGMA-FSPTSSPGYSPSSPGY-SPSSPGYSPTSPGYSPTSPGYSP------- 1528
                    GGM+ +  + SPG +  SPGY SP+    SP SPGY   SP Y         
Sbjct: 1526 --------GGMSQYDASFSPGQNYQSPGYQSPNDYNQSPMSPGYRMQSPMYQGVYGGGDK 1577

Query: 1529 -TSPGYSP-TSPTYSPSSPG------YSPTSPAYS--PTSPSYSPTSPS--YSPTSPSYS 1576
             TSP Y   +SP Y+  S G       SP +  +S    SP+YSP   S   SP +P   
Sbjct: 1578 FTSPIYQAYSSPIYNQISDGVISPQNLSPNNGGHSNITQSPNYSPNQNSNINSPFNPIDG 1637

Query: 1577 PT------SPSYSPTSPSYSPTSPSYSP-----TSPSYSPTS--PAY----SPTSPAYSP 1619
            PT      SPSY        P S   SP     TSP+YSP     AY    S  SP YSP
Sbjct: 1638 PTGIRGSLSPSYMSMRNGGGPGSHLSSPAINGMTSPNYSPQGRDGAYGSLRSGNSPVYSP 1697

Query: 1620 TSPA---YSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 1674
            T  A   YS  SP YSPT+   +YS ++   +    +Y   SPSYSPT+PA   +SP Y 
Sbjct: 1698 TGNAVGGYSNASPHYSPTASVNNYSASNMYQNAVKSNY---SPSYSPTTPAAFSSSPKYG 1754

Query: 1675 PT-SPSYSPTSPTYS-PTSPSYNPQSAKYSPSL 1705
               SP YS  S      TS +    SA+ S SL
Sbjct: 1755 LNKSPRYSIRSGNEGDDTSGANYSNSARQSASL 1787



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 83/188 (44%), Gaps = 26/188 (13%)

Query: 1621 SPAYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSP--------TSPSYSP-TSPAYSPTS 1670
            SP  +  SP Y SP   + SP SP Y   SP Y          TSP Y   +SP Y+  S
Sbjct: 1536 SPGQNYQSPGYQSPNDYNQSPMSPGYRMQSPMYQGVYGGGDKFTSPIYQAYSSPIYNQIS 1595

Query: 1671 PGY-SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSP 1729
             G  SP + S +    +    SP+Y+P       S   SP +P   P       SP+Y  
Sbjct: 1596 DGVISPQNLSPNNGGHSNITQSPNYSPNQN----SNINSPFNPIDGPTGIRGSLSPSYMS 1651

Query: 1730 TSSSYSPTSPSYSPS-----SPTYSPSSPYNAGGGNPDYSPSSPQYSPSA----GYSPSA 1780
              +   P S   SP+     SP YSP     A G     S +SP YSP+     GYS ++
Sbjct: 1652 MRNGGGPGSHLSSPAINGMTSPNYSPQGRDGAYGS--LRSGNSPVYSPTGNAVGGYSNAS 1709

Query: 1781 PGYSPSST 1788
            P YSP+++
Sbjct: 1710 PHYSPTAS 1717


>gi|321468525|gb|EFX79509.1| hypothetical protein DAPPUDRAFT_319347 [Daphnia pulex]
          Length = 1459

 Score = 1407 bits (3641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 725/1479 (49%), Positives = 991/1479 (67%), Gaps = 95/1479 (6%)

Query: 12   VAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
            + KV+ VQFGILSP EI +MSV +  I++ +  E GKPK GGL DPR G ++R  +CETC
Sbjct: 12   IRKVKRVQFGILSPHEILRMSVTEGGIKYPDIYEGGKPKLGGLMDPRQGAVNRSARCETC 71

Query: 70   TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR- 128
               + ECPGHFGH++L KP+FHIGF+   + I+  VC+ CSK+L   ++ + ++ L    
Sbjct: 72   HRTINECPGHFGHIKLVKPVFHIGFLMKTIKILGCVCYYCSKLLVSPNNPEIREILDKSE 131

Query: 129  -NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIA 187
             +P+ R+  + D CK    CE     ++ G  G          CG  QP++  +G+ MI 
Sbjct: 132  GHPRKRMAHVYDICKRINICENDIGEEITGHIG----------CGRYQPRIRRQGLGMIG 181

Query: 188  EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQ 247
            E+K      D+  Q     E    LTA+RVL   KRISDEDC +LG++PKYARPDWMIL 
Sbjct: 182  EWK----HVDEDSQ-----ETTIVLTADRVLENFKRISDEDCAILGMDPKYARPDWMILT 232

Query: 248  VLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
             LP+PPP VRP+          DD+T +L  I++ N  L    R+G    II +   LLQ
Sbjct: 233  CLPVPPPSVRPAVVTRDFSIRQDDITDKLVDIVKANNELELAIRSGENDEIIDQKINLLQ 292

Query: 298  FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
             HI T   N     P +  +SG+ IKSI +RL+ +EGRIRGNLMGKRVDFSART+ITPDP
Sbjct: 293  SHIGTMMMNHSKRFPFSHHKSGQIIKSIKTRLEGREGRIRGNLMGKRVDFSARTIITPDP 352

Query: 358  TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
             + IDQ+GVP  IA N+T+PE VTP NIE+++ELV+ G         AKY+IR++  R+D
Sbjct: 353  NLRIDQVGVPRIIAQNMTFPEIVTPVNIEKMQELVQRGE--------AKYLIRENADRID 404

Query: 418  LRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 477
            L+Y+KK+    LE+G KVER++ DGD V+ NRQPSL K  +MGHR+K++P+ + RLN S 
Sbjct: 405  LKYVKKNP--VLEIGDKVERNIRDGDLVVVNRQPSLRKEDMMGHRVKVLPWPSIRLNPSC 462

Query: 478  TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
             SPYNA+FDGDEMNMH PQS ETR+EV  +++ P+ I++PQ+N+PVMGIVQDTL+G  K+
Sbjct: 463  ASPYNANFDGDEMNMHFPQSLETRSEVENILLTPRQIITPQANKPVMGIVQDTLVGTSKL 522

Query: 538  TKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAW 597
            TKRD F++K+  MN+LM+   +DGK+P+P ILKPRPLWTGKQ+F LIIP  +N+ RT + 
Sbjct: 523  TKRDVFLQKEQMMNLLMFLPTWDGKMPKPAILKPRPLWTGKQLFTLIIPGNVNMMRTHST 582

Query: 598  HADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
            H D+ D+G    ++ GDT V IE GEL+ G LCKKTLG S  SL+H+I+ E+G +   +F
Sbjct: 583  HPDDEDEGPYKWISPGDTKVVIENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRF 642

Query: 654  LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
             G+ Q ++N WLL    SIGIGD +AD +T   I  TI  AK +V  +++++Q+  LEP 
Sbjct: 643  YGNIQTVINNWLLYEGHSIGIGDMLADHQTYLNIQATIQNAKEDVIEVLQRSQNDELEPT 702

Query: 714  PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
            PG T+ ++FEN+V +++  A+++A   A+ SL+E NNLKAM  AGS GS I  SQ  ACV
Sbjct: 703  PGNTLRQTFENQVLRIIYDAQEQASDLAKNSLTEYNNLKAMAVAGSSGSSITTSQAIACV 762

Query: 774  GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
            GQQNVEG+RIPFGF  RTLPHF KDD GPESRGFVENSY+ GLTP EF+FHAM GRE LI
Sbjct: 763  GQQNVEGQRIPFGFRKRTLPHFIKDDNGPESRGFVENSYVSGLTPSEFYFHAMAGRELLI 822

Query: 834  DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDS 893
                  SETG I R+LVK ME +MV YDGTVRNS G ++QF YGEDG+ +  +E Q + +
Sbjct: 823  YETRIKSETGII-RQLVKGMESVMVHYDGTVRNSAGRILQFSYGEDGLAAESVELQKMPT 881

Query: 894  LKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLAT 953
            +K+  S F+K F+F+   EN+      +E   +L +  E+    + E ++L  DR  L  
Sbjct: 882  VKLSNSVFEKKFKFDPSNENYVRRIFNEEITRELISSAEVITEIEHEWEQLYKDREAL-R 940

Query: 954  EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
            +I  +G++   LP NL+R+IW+ QK F ++ R P+D+ P+ V++ V  L  +  +V GED
Sbjct: 941  QIFPTGENKVVLPCNLQRMIWDVQKIFHINKRAPTDLSPLRVIQGVRDLLAKCVIVVGED 1000

Query: 1014 PLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
             LS++A +NATL F  L+RST  SKR+ +E+RL+ EAFEW+IG+IE+RF Q+   PGEM+
Sbjct: 1001 KLSIQANQNATLLFQCLVRSTLCSKRIAEEYRLSSEAFEWLIGKIETRFQQAQAQPGEMV 1060

Query: 1074 GCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGV 1133
            G +AAQS+G+PATQMTLNTFH+AGVS+KNVTLGV RL+EIIN++K  K+PS++VFL+   
Sbjct: 1061 GALAAQSLGQPATQMTLNTFHFAGVSSKNVTLGVARLKEIINISKSPKSPSMTVFLRGEA 1120

Query: 1134 NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE 1193
             +  E+A+ V C LE+TTLR VT  T ++YDPDP+ T+I ED E V  YYE+P  D  P 
Sbjct: 1121 ATDAEKAREVLCRLEHTTLRKVTANTAIYYDPDPLNTVILEDQELVNVYYELP--DFNPT 1178

Query: 1194 KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDE 1253
            ++SPWLLRIE +R+ M DK+L+M  +AEK+   F + + C+F+DDNA+KL+LRI+I++ +
Sbjct: 1179 RLSPWLLRIEFDRKRMTDKRLTMEQIAEKVYTMFGNAVKCMFSDDNAEKLVLRIQILSVD 1238

Query: 1254 APKGELNDESA--EDDVFLKKIESNMLTEMALRGV------------------------- 1286
                E   + A  EDD+FL+ IE NML++M L+G+                         
Sbjct: 1239 DVNEEEEQQVAHMEDDIFLRCIEVNMLSDMTLQGIESIGKVYMHWPQTDQKKRIVVTETG 1298

Query: 1287 ---------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
                            L+ V+   DVD  RT SN + EI++VLGIEA R+++  EL  V+
Sbjct: 1299 EFKAIAEWLLETDGTQLMRVLSERDVDPVRTYSNDICEIMDVLGIEAARKSIKRELNSVL 1358

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
             +   Y+NYRHLA+LCD MT  GH+  I  + I+R DTG +M+C+ +ETV +L +AA  A
Sbjct: 1359 QYYDLYINYRHLALLCDVMTATGHMTPI--NSIDRQDTGALMKCTVKETVSVLSEAAGHA 1416

Query: 1392 ESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIE 1430
            E D LRGV+EN++LGQL  +GTG   L+L+ E  KNAIE
Sbjct: 1417 EVDPLRGVSENLILGQLPRMGTGCFDLFLDAEKCKNAIE 1455


>gi|18736|emb|CAA36736.1| DNA-directed RNA polymerase [Glycine max]
          Length = 977

 Score = 1393 bits (3606), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 745/980 (76%), Positives = 811/980 (82%), Gaps = 113/980 (11%)

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
            D+GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIM+
Sbjct: 1    DHGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIML 60

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNY 918
            KYDGTVRNSLGDVIQFLYGEDGMD++WIE+Q LD+LKMKK+EFD+ FR+E DEENW PNY
Sbjct: 61   KYDGTVRNSLGDVIQFLYGEDGMDAIWIETQKLDTLKMKKTEFDRVFRYEFDEENWKPNY 120

Query: 919  MLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQK 978
            MLQE ++DLKTI+E R+VF+AEVQKLEADR+QLA EIA++GD+S PLPVNLKRLIWNAQK
Sbjct: 121  MLQEPVEDLKTIREFRNVFEAEVQKLEADRHQLAIEIASNGDNSLPLPVNLKRLIWNAQK 180

Query: 979  TFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASK 1038
            TFKVD RRPSDMHPME+VEA+DKLQERLKVVPGED LS EAQKNATL FNILLRSTFASK
Sbjct: 181  TFKVDFRRPSDMHPMEIVEAIDKLQERLKVVPGEDALSQEAQKNATLLFNILLRSTFASK 240

Query: 1039 RVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1098
            RVL+E+RL+RE+FEWV+GEIESRFLQSLV PGEMIG VAAQSIGEPATQMTLNTFH+AGV
Sbjct: 241  RVLEEYRLSRESFEWVVGEIESRFLQSLVVPGEMIGVVAAQSIGEPATQMTLNTFHFAGV 300

Query: 1099 SAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEA 1158
            SAKNVTLGVPRLRE+INVAK IKTPSLSV+LKP    TKERAK VQCALEYTTLRSVT+A
Sbjct: 301  SAKNVTLGVPRLRELINVAKSIKTPSLSVYLKPDAGKTKERAKTVQCALEYTTLRSVTQA 360

Query: 1159 TEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAA 1218
            TEVWYDPDPM TIIEEDV+FV SYYEMPDE++A EKISPW +R+ELNREMMVDKKLSMA 
Sbjct: 361  TEVWYDPDPMSTIIEEDVDFVMSYYEMPDEEVALEKISPWFVRVELNREMMVDKKLSMAD 420

Query: 1219 VAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNML 1278
            +A+KIN EFDDDL+CIFNDDNA+KLILRIRIMND+APKGE+ DESAEDDVFLKKIE+NML
Sbjct: 421  IAQKINLEFDDDLSCIFNDDNAEKLILRIRIMNDDAPKGEVQDESAEDDVFLKKIETNML 480

Query: 1279 TEMALRG-----------------------------------VNLLAVMCHEDVDARRTT 1303
            TEM LRG                                   VNLLAVMCHEDVDA RTT
Sbjct: 481  TEMTLRGIPDINKVFIKNAKVQKFDENEGFKSNGEWMLDTEGVNLLAVMCHEDVDATRTT 540

Query: 1304 SNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHG 1363
            SNHLIE+IEVLGIEAVRR+LLDELR+VISFDGSYVNYRHLAILC+TMTYRGHLMAITRHG
Sbjct: 541  SNHLIEVIEVLGIEAVRRSLLDELRIVISFDGSYVNYRHLAILCETMTYRGHLMAITRHG 600

Query: 1364 INRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE 1423
            INRNDTGPMMRCSFEETVDILLDAA +AE+D LRGVTENI+LGQLAPIGTG C+LYLND 
Sbjct: 601  INRNDTGPMMRCSFEETVDILLDAAAYAETDSLRGVTENIILGQLAPIGTGQCALYLNDG 660

Query: 1424 MLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDG-MMSPGYLFSPNLRLSPVTDAQFS 1482
            MLKNAIELQLPSY +GL+FG+         TPYH+G MMSP YL SPNLRLSP +DAQFS
Sbjct: 661  MLKNAIELQLPSYTDGLDFGIMSG-----ATPYHEGTMMSPSYLLSPNLRLSPSSDAQFS 715

Query: 1483 PYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSP 1542
            PYVGGMAFSP+SSPGYSPSSPGYSPSSPGYSP       TSPGYSPTSPGYSPTSPTYSP
Sbjct: 716  PYVGGMAFSPSSSPGYSPSSPGYSPSSPGYSP-------TSPGYSPTSPGYSPTSPTYSP 768

Query: 1543 SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
            SSPGYSPTSPAYSPTSPSYSPTSP+YSPTSP+YS TSP+YSPTSPSYSPTSP+YSPTSPS
Sbjct: 769  SSPGYSPTSPAYSPTSPSYSPTSPAYSPTSPAYSSTSPAYSPTSPSYSPTSPAYSPTSPS 828

Query: 1603 YS------------------------------------------PTSPAYSPTSPAYSPT 1620
            YS                                          PTSP+Y+P S  YSP 
Sbjct: 829  YSLTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSPTSPSYSPTSPSYNPQSAKYSP- 887

Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSY---------------------SPTSPSYSPTSPSY 1659
            S AYSP+SP  SPTSP+YSPTSPSY                     S  SP YSPTSP +
Sbjct: 888  SLAYSPSSPRLSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYNSGVSPDYSPTSPQF 947

Query: 1660 SPTSPAYSPTSPGYSPTSPS 1679
            SP S  YSP+ PGYSP+S S
Sbjct: 948  SP-SAGYSPSQPGYSPSSTS 966


>gi|321468694|gb|EFX79678.1| hypothetical protein DAPPUDRAFT_304478 [Daphnia pulex]
          Length = 1441

 Score = 1387 bits (3591), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 724/1475 (49%), Positives = 994/1475 (67%), Gaps = 113/1475 (7%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            V+ VQ GILSPDEIR+ SV    I++ E  E GKPK GG+ DPR G  +R  +C+TC  N
Sbjct: 15   VKKVQLGILSPDEIRKQSVTAGGIKYPEIYEGGKPKLGGIMDPRQGVTNRSARCQTCDGN 74

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA-LKIRN-P 130
            M ECPGHFGH++LAKP+FH+GF +  + I+R VC+ CSK+L   ++ K ++  LK  + P
Sbjct: 75   MNECPGHFGHIDLAKPVFHVGFFEKTIEILRCVCYYCSKLLVSPNNPKLQEIFLKSEDQP 134

Query: 131  KNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKN---KGGCGAQQPKLTIEGMKMIA 187
              R+  + + CK K  CEGGD+I   G+D  EP+ ++    GGCG  QP ++   +++IA
Sbjct: 135  GKRMALVHELCKGKNICEGGDQI---GED--EPITEDMVGHGGCGRSQPSISNRQLEIIA 189

Query: 188  EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQ 247
            ++K     N D         +K  LTAE VL + KRISDE+C +LG++PKYARP+WMI+ 
Sbjct: 190  KWK-----NLD----IVSGAKKLVLTAEHVLAIFKRISDEECAILGMDPKYARPEWMIIS 240

Query: 248  VLPIPPPPVR-------PSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHI 300
             LP+PPP  R         D LT +L  I++ N  L+R E++GA   II+   ++LQF+I
Sbjct: 241  CLPVPPPNTRPPVMNGSEHDYLTRKLVDIVKVNNELQRNEQSGAEDPIIANNIKMLQFNI 300

Query: 301  ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTIN 360
            A   +                  SI +RL+ K+GRIRGNLMGK VDFSARTVITPDP + 
Sbjct: 301  AMLSN------------------SIKNRLEGKKGRIRGNLMGKLVDFSARTVITPDPNLR 342

Query: 361  IDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRY 420
            IDQ+GVP  IA N+T+PE VT +NIE+++ELV+ G         AKY+IR++G R DL+Y
Sbjct: 343  IDQVGVPRIIAQNMTFPEIVTSFNIEKMQELVQRGE--------AKYLIRENGDRFDLKY 394

Query: 421  LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP 480
            +KK+    LELG K+ER++ DGD V+ NRQP+L K  +MGHR+K++P+ + RLN S  SP
Sbjct: 395  VKKNP--VLELGDKLERNIRDGDLVVLNRQPALRKEHMMGHRVKVLPWPSIRLNPSCASP 452

Query: 481  YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
            YNA+FDGDEMN+HVPQS ETRAE  ++++  + I++PQ+N+PVMGIVQDTL+G  K+TKR
Sbjct: 453  YNANFDGDEMNLHVPQSMETRAEAEQILITSRLIITPQANKPVMGIVQDTLVGAYKLTKR 512

Query: 541  DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD 600
            D F+EK+  MN+LM+   +DGK+P+P ILKPRP WTGKQ+F LIIP  +N+  T + H D
Sbjct: 513  DVFLEKEQMMNLLMFLPTWDGKMPKPAILKPRPQWTGKQLFTLIIPGNVNMMITHSTHPD 572

Query: 601  N-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGH 656
            + D+G    ++ GDT V +E GEL+ G LCKKTLG S  SL+H+I+ E+G +   +F G+
Sbjct: 573  DEDEGPYKWISPGDTKVMVENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRFYGN 632

Query: 657  TQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR 716
             Q ++N WLL    SIGIGD + D  T   I  TI  AK +V  +I+++++  LEP PG 
Sbjct: 633  IQTVINNWLLYEGHSIGIGDMLGDRPTYMDIQATIQNAKEDVIEVIQKSRNDELEPTPGN 692

Query: 717  TMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 776
            T+ ++ EN+VN++L  AR+E G SA+ SL+E NNLKAMV AGS GS +NISQ+ ACVGQQ
Sbjct: 693  TLRQTLENQVNRILIDARNETGGSAKNSLTEFNNLKAMVVAGSSGSNVNISQVIACVGQQ 752

Query: 777  NVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 836
            NVEGKRIPFGF  RTLPHF KDD+GPESRGF       GLTP EF+FHAM  R+ LIDTA
Sbjct: 753  NVEGKRIPFGFRKRTLPHFIKDDFGPESRGFGS-----GLTPSEFYFHAMD-RKALIDTA 806

Query: 837  VKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKM 896
            VKT+ TGYIQR L+KAME +MV YDGTVRNS G ++QF YG DG+ +  +E Q + ++ +
Sbjct: 807  VKTANTGYIQRSLIKAMESVMVHYDGTVRNSAGRILQFSYGGDGLSAESVELQKMPTVNL 866

Query: 897  KKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIA 956
                F+K F+F+   EN+      +E   +L +  E+    + E ++L  DR  L  +I 
Sbjct: 867  SNEAFEKKFKFDPSNENYVRRIFNEEITRELISSAEVITEIEHEWEQLYKDREAL-RQIF 925

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
             +G++   LP NL+R+IW+ QK F ++ R P+D+ P+ V++ V  L  +  +V GED LS
Sbjct: 926  PTGENKVVLPCNLQRMIWDVQKIFHINKRAPTDLSPLRVIQGVRDLLAKCVIVVGEDKLS 985

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
            ++A +NATL F  L+RST  SKR+ +E+RL+ EAFEW+IGEI +RF Q+   PGEM+G +
Sbjct: 986  IQANQNATLLFQCLVRSTLCSKRLAEEYRLSSEAFEWLIGEIATRFQQAQAQPGEMVGAL 1045

Query: 1077 AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNST 1136
            AAQS+GEPAT+MT+NTFH+AGVS+KNVTLGV RL+EIIN++K  K+PS++VFL+    + 
Sbjct: 1046 AAQSLGEPATKMTVNTFHFAGVSSKNVTLGVARLKEIINISKSPKSPSMTVFLRGEAATD 1105

Query: 1137 KERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKIS 1196
             E+A+ V C LE+TTLR VT  T ++YDPDP+ T+I ED +FV  YYEM D D  P +IS
Sbjct: 1106 AEKAREVLCRLEHTTLRKVTANTAIYYDPDPLNTVILEDQDFVNFYYEMGDFD--PTRIS 1163

Query: 1197 PWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPK 1256
            PWLLRIEL+R+ M DK+L+M  +AEK+   F + + C+F+DDNA+KL+LRI+I++ +   
Sbjct: 1164 PWLLRIELDRKRMTDKRLTMEQIAEKVYTMFGNAVKCMFSDDNAEKLVLRIQILSVDDVN 1223

Query: 1257 GELNDESA--EDDVFLKKIESNMLTEMALRGV---------------------------- 1286
             E   + A  EDDVFL+ IE NML++M L+G+                            
Sbjct: 1224 EEEEQQVAHMEDDVFLRCIEVNMLSDMTLQGIESIGKVYMHWPQTDQKKRIVVTETGEFK 1283

Query: 1287 ------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1334
                         L+ V+   DVD  RT SN + EI++VLGIEA R+++  EL  V+ + 
Sbjct: 1284 AIAEWLLETDGTQLMRVLSERDVDPVRTYSNDICEIMDVLGIEAARKSIKRELNSVLQYY 1343

Query: 1335 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1394
              Y+NYRHLA+LCD MT  GH+  I  + I+R DTG +M+C+ +ETV +L +AA  AE D
Sbjct: 1344 DLYINYRHLALLCDVMTATGHMTPI--NSIDRQDTGALMKCTVKETVSVLSEAAGHAEVD 1401

Query: 1395 YLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI 1429
             LRGV+EN++LGQL  +GTG   L+L+ E  KNAI
Sbjct: 1402 PLRGVSENLILGQLPRMGTGCFDLFLDAEKCKNAI 1436


>gi|19528357|gb|AAL90293.1| LD43558p [Drosophila melanogaster]
          Length = 1429

 Score = 1363 bits (3529), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 778/1459 (53%), Positives = 994/1459 (68%), Gaps = 165/1459 (11%)

Query: 456  MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 515
            MS+MGHR+K++P+STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I+
Sbjct: 1    MSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQII 60

Query: 516  SPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLW 575
            +PQ+N+PVMGIVQDTL   RK+TKRD FI ++  MN+LM+   +D K+PQP ILKPRPLW
Sbjct: 61   TPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLW 120

Query: 576  TGKQVFNLIIPKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLG 631
            TGKQ+F+LIIP  +N+ RT + H D  D+G    ++ GDT V +E GEL+ G LCKK+LG
Sbjct: 121  TGKQIFSLIIPGNVNMIRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLG 180

Query: 632  TSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTI 691
            TS GSL+H+ + E+G D A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I
Sbjct: 181  TSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAI 240

Query: 692  SKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNL 751
             KAK++V N+I++A +  LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNL
Sbjct: 241  KKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNL 300

Query: 752  KAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENS 811
            KAMV +GSKGS INISQ+ ACVGQQNVEGKRIP+GF  RTLPHF KDDYGPESRGFVENS
Sbjct: 301  KAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENS 360

Query: 812  YLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 871
            YL GLTP EF+FHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +
Sbjct: 361  YLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQL 420

Query: 872  IQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIK 931
            IQ  YGEDG+    +E Q + ++K+    F+K F+F+   E      M + + DD+  IK
Sbjct: 421  IQLRYGEDGLCGELVEFQNMPTVKLSNKSFEKRFKFDWSNER----LMKKVFTDDV--IK 474

Query: 932  ELRDVFDAEVQKLEADRYQLAT------EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPR 985
            E+ D  +A +Q+LEA+  +L +      +I  +G+S   LP NL+R+IWN QK F ++ R
Sbjct: 475  EMTDSSEA-IQELEAEWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQKIFHINKR 533

Query: 986  RPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHR 1045
             P+D+ P+ V++ V  L ER  +V G D +S +A +NATL F  L+RST  +K V +E R
Sbjct: 534  LPTDLSPIRVIKGVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFR 593

Query: 1046 LTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1105
            L+ EAFEW++GEIE+RF Q+   PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTL
Sbjct: 594  LSTEAFEWLVGEIETRFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTL 653

Query: 1106 GVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDP 1165
            GVPRL+EIIN++KK K PSL+VFL  G     E+AKNV C LE+TTLR VT  T ++YDP
Sbjct: 654  GVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 713

Query: 1166 DPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQ 1225
            DP  T+I ED EFV  YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN 
Sbjct: 714  DPQRTVISEDQEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINV 771

Query: 1226 EFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMA 1282
             F +DL CIFNDDNADKL+LRIRIMN+E  K +  DE+    EDD+FL+ IE+NML++M 
Sbjct: 772  GFGEDLNCIFNDDNADKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMT 831

Query: 1283 LRGV----------------------------------------NLLAVMCHEDVDARRT 1302
            L+G+                                        +++ V+   DVD  RT
Sbjct: 832  LQGIEAIGKVYMHLPQTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRT 891

Query: 1303 TSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRH 1362
            +SN + EI +VLGIEAVR+++  E+  V+ F G YVNYRHLA+LCD MT +GHLMAITRH
Sbjct: 892  SSNDICEIFQVLGIEAVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRH 951

Query: 1363 GINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLND 1422
            GINR DTG +MRCSFEETVD+L+DAA  AE+D +RGV+ENI++GQL  +GTG   L L+ 
Sbjct: 952  GINRQDTGALMRCSFEETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDA 1011

Query: 1423 EMLKNAIEL--QLPSYMEG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSP 1475
            E  +  IE+   L + M G     +  G TP+ +P   TP+ +   +P Y FSP   +S 
Sbjct: 1012 EKCRFGIEIPNTLGNSMLGGAAMFIGGGSTPSMTP-PMTPWAN-CNTPRY-FSPPGHVSA 1068

Query: 1476 VTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS--PGYSPTSPGY 1533
            +T        GG +FSP+++   S  SP +SP+ PG SP+SPG S +   P     SP Y
Sbjct: 1069 MTP-------GGPSFSPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSY 1121

Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
            SPTSP Y+ SSPG +  SP YSP+SP+YSPTSP Y+  SP Y+ T+P+++P S  YSP+S
Sbjct: 1122 SPTSPNYTASSPGGA--SPNYSPSSPNYSPTSPLYA--SPRYASTTPNFNPQSTGYSPSS 1177

Query: 1594 PSYSPTSPSYSPT-----SPAYSPT-SPAYSPTSP------------------------- 1622
              YSPTSP YSPT     SP+++ + S  YSP +                          
Sbjct: 1178 SGYSPTSPVYSPTVQFQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPS 1237

Query: 1623 ---------AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS------ 1667
                      YSPTSPSYSPTSP+Y+P +PSYSPTSP+YS  SP YSP SPAYS      
Sbjct: 1238 SPSYSPTSPCYSPTSPSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKY 1296

Query: 1668 -----------------PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPS 1710
                             P SP Y+P SP YSP SP YSPTSP Y+P S ++SPS  YSP+
Sbjct: 1297 SPTSPTYSPPSPSYDGSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT 1356

Query: 1711 SPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY 1770
                   S YS TSP YSP  S YSP+S  YSP+SPTY+P++         +YSP+SP Y
Sbjct: 1357 ------GSTYSATSPRYSPNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTSPMY 1402

Query: 1771 SPSA--GYSPSAPGYSPSS 1787
            SP+A   YSP++P YSPSS
Sbjct: 1403 SPTAPSHYSPTSPAYSPSS 1421


>gi|160331837|ref|XP_001712625.1| rpb1 [Hemiselmis andersenii]
 gi|159766074|gb|ABW98300.1| rpb1 [Hemiselmis andersenii]
          Length = 1464

 Score = 1358 bits (3515), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 697/1482 (47%), Positives = 975/1482 (65%), Gaps = 102/1482 (6%)

Query: 11   EVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCT 70
            E  KV+ +QF ILSP EIR  SV  IE   + E   PK GGL DPRLG +D+ + C +  
Sbjct: 8    EEKKVKYIQFSILSPQEIRNYSVACIESDLSFENNSPKTGGLMDPRLGAVDKDIYCTSDM 67

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP 130
             +  +CPG+FGHLELAKP+FH  FM  VL I+R +  + SK++ +    K K  LK+RNP
Sbjct: 68   NSFVDCPGYFGHLELAKPVFHESFMNLVLLILRCIDHSTSKLILNSKSQKVKNILKVRNP 127

Query: 131  KNRLKKILDACK--NKTKCEGGDEIDVPGQDG-EEPLKKNKGGCGAQQPKLTIEGMKMIA 187
            K RL  +   C   N +K E     +V   D  EE L          QPK + +G  +IA
Sbjct: 128  KQRLSILSKLCSSLNSSKTEK----NVSNDDFFEENL--------TFQPKYSRDGWCIIA 175

Query: 188  EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQ 247
            ++        D+    EP    + ++AER+  + K I D DC+ +GLNPK  RPDWMIL 
Sbjct: 176  KF--------DKFITSEPT---RIMSAERIHEIFKNIVDLDCKKIGLNPKLCRPDWMILT 224

Query: 248  VLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
            VLP+PPP +RPS          DDLT++L  IIR N++L +   + APA +I+E   LLQ
Sbjct: 225  VLPVPPPTIRPSVMFDMTSRAEDDLTYKLGDIIRTNKSLSQLLISCAPAQVINEQFNLLQ 284

Query: 298  FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
            +HI +Y +N++P   ++ Q+SGRPIKS+  RL+ KEGR+RGNLMGKRVDFSARTVITPDP
Sbjct: 285  YHIGSYMNNKVPNIAKSIQKSGRPIKSLAQRLQGKEGRVRGNLMGKRVDFSARTVITPDP 344

Query: 358  TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
             I +D++G+PWSIALNLTYPE V+ +N++++K++V+ GP   PG   AKYIIR+DG R+D
Sbjct: 345  NILLDEIGIPWSIALNLTYPEIVSEFNMKKMKKIVQNGPIHHPG---AKYIIRNDGSRID 401

Query: 418  LRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 477
            LR++K  S+  LE+G ++ERHL DGD VLFNRQPSLHKMS+MGH +KIM +STFR+NLS 
Sbjct: 402  LRFVKNLSEIKLEIGNQIERHLQDGDLVLFNRQPSLHKMSMMGHIVKIMHFSTFRMNLSA 461

Query: 478  TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
            TSPYNADFDGDEMN+H+PQ+ E ++E+L L+M+P CI+S Q N+PV+GIVQD+LLG   +
Sbjct: 462  TSPYNADFDGDEMNLHLPQTLEGKSELLNLLMLPNCIISQQGNKPVIGIVQDSLLGSFLL 521

Query: 538  TKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAW 597
            ++R+ F++   FM +LM  +++DG +P P+I+KP+ LWTGKQVF+L +PK IN  R    
Sbjct: 522  SQRNIFLDYSKFMLLLMQLQEWDGSIPIPSIIKPQTLWTGKQVFSLFLPK-INFLRKCLS 580

Query: 598  HADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHT 657
            H++N+K  ++  DT V I  G+L+SG + K+++G S GS+IH+ W+E GP     F+   
Sbjct: 581  HSENEKTNISPKDTRVMILGGQLISGMIDKRSVGASGGSIIHICWKEFGPKKTSNFISQF 640

Query: 658  QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
            Q +VN WLL   FS+GIGDTIAD KTM  I  TI  AK   + +     +KS E   G+ 
Sbjct: 641  QTIVNSWLLFEGFSVGIGDTIADKKTMNNIIKTIKSAKIEARQVTLLNINKSEENFLGKI 700

Query: 718  MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
            + + FEN +N++LN+ARD+AGS+AQKSLS +NN+K MV  GSKGSFINISQ+ ACVGQQN
Sbjct: 701  LKDDFENHINKILNSARDKAGSNAQKSLSNANNIKRMVDCGSKGSFINISQIIACVGQQN 760

Query: 778  VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
            VEGKRIP GF  R+LPHF+KD+YGPE+RGFV+NSY+ GL P EFFFH+MGGREGLIDTA+
Sbjct: 761  VEGKRIPMGFNKRSLPHFSKDNYGPETRGFVQNSYISGLRPDEFFFHSMGGREGLIDTAI 820

Query: 838  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
            KTSETGYIQRRL KAME++MV+YD TVRN  G++I+F YGEDGMD++ +E+Q  DS K+ 
Sbjct: 821  KTSETGYIQRRLSKAMENVMVEYDFTVRNCEGNIIEFFYGEDGMDALNLENQNFDSTKLS 880

Query: 898  KSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKE--LRDVFDAEVQKLEADRYQLATEI 955
              E +  FRF ++       Y  +E + +LK  K+   +     E  +++ DR  L   I
Sbjct: 881  DRELEIVFRFNINSPLIGMAYDGKE-VSELKIFKDKNTKKKIVEEFLQIKKDREILRQMI 939

Query: 956  ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG---- 1011
              + + + PLPVN+ R+I NA+K F     +   + P+E+++ + KL+       G    
Sbjct: 940  INNYELTIPLPVNIDRIIKNAEKLFP--QEKNCRISPIEIIDGLKKLENYCFDSLGPKKN 997

Query: 1012 ------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
                   +    E++ NATL F I LRS  ASK +  +++ ++ AF WV+ EI +++ +S
Sbjct: 998  EECSGFCNCCKCESRLNATLLFRIFLRSKLASKIIFFKYKFSKVAFLWVLNEICTQYRKS 1057

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
            + +PGEM+G ++AQSIG+PATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV + +KTPSL
Sbjct: 1058 IASPGEMVGTISAQSIGQPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVLQTVKTPSL 1117

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +++ +   +S+  + K  Q  LE+ TL+S+ +   V+YDPDP  TI++ D   +++Y+E+
Sbjct: 1118 TIYFRKEFSSSLSKIKQFQQTLEFITLKSMIKKKTVFYDPDPYKTILKNDQIILENYFEI 1177

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN-DDNADKLI 1244
            PD       I  W  +I L ++  +DKKLS   + EK+ ++       I N D+N+  L 
Sbjct: 1178 PDWASEISCIGTWTTKIGLEKDEFIDKKLSTIQIVEKMKKKIKPLPLFIVNSDENSQNLF 1237

Query: 1245 LRIRIM--NDEAPKGE------------------LN--------------DESAEDDVFL 1270
             R++++  N +  K                    LN                S     F+
Sbjct: 1238 FRLKLIWPNIDWTKNSKKTVKNPNFNFFNFERKYLNRTTYFLSNINLKSYGTSKIKKAFI 1297

Query: 1271 KK------------IESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEA 1318
            +K            I++N    +   GV+L  ++ +  +D  R +SN ++EI ++LGIEA
Sbjct: 1298 RKSSQIIFESISGSIKNNEEYVLDTEGVDLRYILNYSGIDYTRCSSNDILEIYKILGIEA 1357

Query: 1319 VRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE 1378
            VR+ L+ ELR +ISFDGSYVN RHL++L D MT++G LM+ITRHGINR D GP+ +CSFE
Sbjct: 1358 VRKILIQELRNLISFDGSYVNSRHLSLLVDVMTHKGKLMSITRHGINRTDIGPIAKCSFE 1417

Query: 1379 ETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYL 1420
            ET+++L  AA F   D L+GV+ +I++GQ++ +GTG   L+L
Sbjct: 1418 ETIEVLYQAAAFGVCDNLKGVSGSILVGQVSSLGTGKIDLFL 1459


>gi|428180807|gb|EKX49673.1| Rpb1, RNA polymerase II largest subunit [Guillardia theta CCMP2712]
          Length = 1473

 Score = 1358 bits (3515), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 700/1493 (46%), Positives = 967/1493 (64%), Gaps = 140/1493 (9%)

Query: 10   AEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE-RGKPKPGGLSDPRLGTIDRKM-KCE 67
             EV KV+ VQFGILSPD+I+  SV +++  E  + +GKPK  GL DP LG   R   KC 
Sbjct: 14   CEVVKVKCVQFGILSPDDIKNFSVAEVKTIEKFDAQGKPKTAGLMDPHLGVPPRAAYKCA 73

Query: 68   TCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKI 127
            TC  +   CPGHFGH+ LA+P++H GF+  +  I+  VC  C  ++ DE D  F+ AL++
Sbjct: 74   TCHGSDETCPGHFGHINLAEPVYHCGFLTMLQKILGCVCHQCGMLMVDERDIHFRSALRL 133

Query: 128  RNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKG----GCGAQQPKLTIEGM 183
            ++P+ RL  I   CK+K KC              E + K++     GCGA  P +   G+
Sbjct: 134  KHPQARLNAIASICKSKKKC------------SHEAMDKSETQVDRGCGAPHPSILRAGL 181

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
                 +K +      +E + E ++ ++ L A+  L +L+RI+DEDC+ LGL+P++ARPDW
Sbjct: 182  N----FKVKYPTVSAEEHVDESLQGERELFADEALAILRRITDEDCEKLGLDPRFARPDW 237

Query: 244  MILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            MI+QV+ + PP VRP+          DD+T +L  +I+ N +L++ + +GAP     E  
Sbjct: 238  MIVQVVAVSPPHVRPAIMTDSGSRGEDDITFKLGDVIKANNHLKQLKESGAPPSQRRESQ 297

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
             LLQ+H+AT ++NEL GQP+A  R+G+ IKS+  R+K KEGR+RGNLMGKRVDFSARTVI
Sbjct: 298  MLLQYHLATMYNNELAGQPQAQHRNGKAIKSLRQRIKGKEGRVRGNLMGKRVDFSARTVI 357

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            T DPTI+ DQ+GVP SIA N+T+PE V+ +NIE ++ LV  GP   PG   AK I+R DG
Sbjct: 358  TGDPTISCDQVGVPRSIAYNMTFPEIVSIHNIENMRNLVMNGPDQHPG---AKSIVRSDG 414

Query: 414  QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
            +R+DLR++K  SD  L+ GY VER + D D V+FNRQPSLHKMS+MGHR+KIMPYSTFRL
Sbjct: 415  KRVDLRFVKMQSDQILDYGYIVERQMQDDDCVIFNRQPSLHKMSMMGHRVKIMPYSTFRL 474

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NLSVTSPYNADFDGDEMN+H+PQS+ET++E+  +MMVP  IVSPQ N PVMGIVQDTLLG
Sbjct: 475  NLSVTSPYNADFDGDEMNLHLPQSYETKSEIYNIMMVPFQIVSPQKNAPVMGIVQDTLLG 534

Query: 534  CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKP----RPLWTGKQVFNLIIP-KQ 588
            C  +T+R+TF+EKD+ MN+LM    FDG+VP P I+K      PLWTGKQV +L IP ++
Sbjct: 535  CSVLTRRNTFVEKDLMMNVLMHVPGFDGRVPIPAIVKAPNNKGPLWTGKQVLSLAIPSRR 594

Query: 589  INLFRTAAWHADNDKG-----ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            INL +   +  D D G      +T  D  + IE GE+L+G++    + TS G L+H+ W 
Sbjct: 595  INLSKLNQYKTDEDTGDVFKQTMTINDAHIVIEDGEILTGSVDSSVIKTSQGGLVHMCWA 654

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
            ++GP  AR  L +TQ +VN+WLLQN +S+G+ D +A A+T++ I  +I  AK +V+  ++
Sbjct: 655  DLGPAGARDLLNNTQIIVNHWLLQNGWSVGVSDIVASAETIKAIGASIDAAKKDVQGFVE 714

Query: 704  QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSES-NNLKAMVTAGSKGS 762
            Q Q  SL+ +PG TM + FE +VN  LN A  +  +  Q+ +  + N +  M  +GSKG+
Sbjct: 715  QWQQGSLKKQPGCTMHQVFEMQVNSRLNNALSDGSNIVQRGIKFALNRINEMRKSGSKGT 774

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
             IN+ Q+ A VGQQN+E  RIP+GF  RTLPHF KDD G ESRGFVENSY +GLTPQE +
Sbjct: 775  DINLCQIIALVGQQNIENCRIPYGFKRRTLPHFRKDDPGAESRGFVENSYTQGLTPQELY 834

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAMGGREGLIDTAVKTSETGYIQRRL+KA+ED++V+YDGTVRNSLG VIQF YGEDG+D
Sbjct: 835  FHAMGGREGLIDTAVKTSETGYIQRRLIKALEDVVVRYDGTVRNSLGSVIQFAYGEDGLD 894

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQ 942
            + ++ SQ   +L+M+K++    +  ++D+     NY+  +    +    E+RD    E +
Sbjct: 895  ATFLLSQKPPTLEMRKAQLRDNYFIDLDKPESIKNYVHSDIRSQIAGDLEVRDRLKKEYE 954

Query: 943  KLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            ++E D+ +L ++I    DSS                                 +E V  L
Sbjct: 955  QIETDQEELRSKIF--ADSS---------------------------------LEGVRDL 979

Query: 1003 QERLKVV--PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             ERLKV   PGED +S+EA+ NAT  FNI+LRS FA K+V+  HRL ++AF+W++GE+ES
Sbjct: 980  SERLKVALFPGEDNISIEARNNATHLFNIILRSQFAVKKVMAGHRLNKKAFDWILGEVES 1039

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
            +F +++V PGE +GC+A+QS+GEP TQMTLNTFH+AGVSAK  T GVPR++E+IN+AK I
Sbjct: 1040 KFRRAIVNPGESVGCIASQSLGEPVTQMTLNTFHFAGVSAKKGTKGVPRMKELINIAKNI 1099

Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
            K P +S++LK G    + +AK +   +EY  LR + +  E+ Y+P+P+ T + ED   V+
Sbjct: 1100 KAPGISIYLKEGHFEDEHKAKAISNKIEYLNLRLLVKHAEIHYEPNPLLTRVPEDQAIVE 1159

Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFD---DDLTCIFND 1237
            ++YE+ DE   P+ +SPW+LR  L+   +  K + ++ V  KI + +    D+   I +D
Sbjct: 1160 AHYELADE--PPKNMSPWVLRFVLDNPTLDGKDMYLSEVVAKIKETYHTGRDEFEIIASD 1217

Query: 1238 DNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV----------- 1286
            DNAD L++R+R++            S +  +   KI  +ML  + LRG+           
Sbjct: 1218 DNADLLVIRLRLLT----------RSDKYVLAFGKIAMDMLDTITLRGIPDIPRVLIEQD 1267

Query: 1287 ------------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGI 1316
                                          NLL V+   +VD  RT SN + EI++VLGI
Sbjct: 1268 KLYHKLFSPDDPKYEKYNKAVPSYLYAEGNNLLRVLSFAEVDQVRTVSNDITEILQVLGI 1327

Query: 1317 EAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCS 1376
            EAVR ALL E+R V+    SYVNYRH+A L D MT+RG LM+ITRHGINR +TGP+MRC+
Sbjct: 1328 EAVRCALLKEIREVMR-ASSYVNYRHIACLVDVMTHRGILMSITRHGINRLETGPLMRCT 1386

Query: 1377 FEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI 1429
            FEETV+ILL+AA F+  D   GV EN++LG L P+GTG   L+LN E    A+
Sbjct: 1387 FEETVEILLEAAAFSMPDRCLGVAENVILGNLCPLGTGSFELFLNTESCLEAV 1439


>gi|399949936|gb|AFP65592.1| DNA-directed RNA polymerase II largest chain [Chroomonas
            mesostigmatica CCMP1168]
          Length = 1473

 Score = 1320 bits (3415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 701/1494 (46%), Positives = 970/1494 (64%), Gaps = 106/1494 (7%)

Query: 7    YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKC 66
            Y   E  K+  +QF ILSP+EIR  SV +IE+  T +   PK GGL DPRLG +D+ + C
Sbjct: 3    YDIVEEKKIDYIQFSILSPEEIRIYSVAKIENDFTYQNSIPKMGGLMDPRLGAVDQNICC 62

Query: 67   ETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK 126
             T      ECPG+FGHLELAKP+FH  FM  VL I+R V    S+++ + D  K K  LK
Sbjct: 63   TTDMNEFIECPGYFGHLELAKPVFHESFMDFVLMILRCVDHVTSRLIFNCDSPKVKNILK 122

Query: 127  IRNPKNRLKKI--LDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            IRNP+ RL  +  L +     K E     D      EE +          QPK + +G  
Sbjct: 123  IRNPRQRLSMLSKLGSTSTGLKSEKNTSSD---DFFEENI--------TYQPKYSRDGWC 171

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            +IA++        +Q    EP    + L AER+  + ++ISD D + +GLNP  ++PDWM
Sbjct: 172  IIAKF--------NQSITSEPT---RILGAERIHEIFEKISDLDSKKIGLNPSVSKPDWM 220

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            IL VLPIPPP +RPS          DDLT++L  I+R N++L +     AP  II+E   
Sbjct: 221  ILTVLPIPPPTIRPSVMFDMTSRAEDDLTYKLGDIVRTNKSLFQLTIACAPVQIINEHLN 280

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQ+HI +Y +N++P  P++ Q+SGRPIKS+  RL+ KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 281  LLQYHIGSYMNNKVPNIPKSIQKSGRPIKSLAERLQGKEGRVRGNLMGKRVDFSARTVIT 340

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP I +D +GVPWSIALNLTYPE VT +N E+LK+LV  GP   PG   A+Y+I++DG 
Sbjct: 341  PDPNIPLDGIGVPWSIALNLTYPEIVTSFNFEKLKKLVLNGPIHHPG---ARYVIKNDGS 397

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            RLDLRY+KK  +  LE+G KVERHL DGD VLFNRQPSLHKMS+MGH +KIM YSTFR+N
Sbjct: 398  RLDLRYVKKLDEIPLEIGCKVERHLQDGDVVLFNRQPSLHKMSMMGHVVKIMHYSTFRMN 457

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LS TSPYNADFDGDEMN+H+PQ+ E +AE+L L+M+P CI+S Q N+PVMGIVQD+L+G 
Sbjct: 458  LSATSPYNADFDGDEMNLHLPQTIEAKAELLNLLMLPNCIISQQGNKPVMGIVQDSLVGG 517

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
              ++ RD+F+ +  FM +LM  ++++G +P PTILKPR LWTGKQ+F++ +PK IN  R 
Sbjct: 518  FLLSHRDSFLNRSQFMLLLMQLQEWNGSIPFPTILKPRILWTGKQIFSVFLPK-INFLRK 576

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
            +  H++++K  ++  DT V I  G L+SG + K+++G S GSLIH+ W+E GP  A  F+
Sbjct: 577  SLGHSEHEKSNISPRDTRVLILGGHLISGIIDKRSVGASGGSLIHICWKEFGPKKASLFV 636

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
               Q +VN WL    FS+GIGDTI+D K M+ I  TI KAK   + + ++  +K  E   
Sbjct: 637  SQFQLIVNTWLQSKGFSVGIGDTISDNKIMKDITKTIKKAKKEARQITQKNTNKKKEISI 696

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G+ + ++FEN +N +LN+ARD+AGS AQ+ L +SNN+K MV  GSKGSFINISQ+ ACVG
Sbjct: 697  GKILNDNFENHINVILNSARDKAGSIAQRCLLDSNNIKRMVMCGSKGSFINISQIIACVG 756

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQN+EGKRIP  F +R LPHF+K + GPE+RGFV+NSY+ GL+P+EFFFHAMGGREGLID
Sbjct: 757  QQNIEGKRIPLCFDNRCLPHFSKQNNGPETRGFVQNSYISGLSPEEFFFHAMGGREGLID 816

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TA+KTSETGYIQRRL KAME+I V+YD TVRNS G +I+F YGEDGMD++ +E+Q ++++
Sbjct: 817  TAIKTSETGYIQRRLSKAMENISVEYDLTVRNSEGGIIEFFYGEDGMDALNLENQQMNTI 876

Query: 895  KMKKSEFDKAFRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLA 952
            KM   E +  FR  +D      +    L + +  +K  K+ R+    E  ++  DR  L 
Sbjct: 877  KMSNREIEIVFRLNVDSPCLGLDQKGNLYKNLSRIKNRKKNREKIIKEFLQITKDRDILR 936

Query: 953  TEIATSGDSSWPLPVNLKRLIWNAQKTF-KVDPRRPSDMHPMEVVEAVDKLQERL--KVV 1009
                   D + PLPVN+ R+I NA   F K+   + SD+ P E+++ V K++      + 
Sbjct: 937  QMSINEYDFNIPLPVNISRIIINANNIFPKIS--KYSDLSPTEIIDGVKKIENYCFDSLG 994

Query: 1010 PGEDPLS--------VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            P  D L          E++ NATL F I LRS  ASK VL  ++L+R++F WV+ EI  +
Sbjct: 995  PKIDSLCKSFCNCCRCESRLNATLLFCIYLRSMLASKLVLFTYKLSRKSFVWVLNEICIQ 1054

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            + +S++ PGEM+G ++AQSIG+PATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV++  K
Sbjct: 1055 YRKSIINPGEMVGTISAQSIGQPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSRTAK 1114

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPSL+++ K        + K+ Q  LEY TL+S+ + +   YDPDP  T+ +++   V++
Sbjct: 1115 TPSLTIYFKKNFAFAIGKIKHFQQTLEYLTLKSLMDKSLFIYDPDPYLTVFKKNRFMVEN 1174

Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFD-DDLTCIFNDDNA 1240
            +YE+P+ ++    +  W+L +++  E  V ++LS+  + EKI ++     L  I +++N 
Sbjct: 1175 FYEIPEINLDNTSLGTWVLLLKIQPEEFVHRRLSIEQLVEKIKRKSKPLSLLIINSNENH 1234

Query: 1241 DKLILRIRIMNDEAPK----GELNDESAEDDVFLKKIESNMLTEM--------------- 1281
            D L++RI++     PK      L++ES       +  E   L  +               
Sbjct: 1235 DCLLMRIKVF---WPKFNWSKNLSNESKNFKTVFQIFERQYLIRLKYLIVNINLKIHGTS 1291

Query: 1282 ----AL--------------------------RGVNLLAVMCHEDVDARRTTSNHLIEII 1311
                AL                           GV+L  ++    +D  R++SN ++EI 
Sbjct: 1292 KIKKALIRKIDFPKFDPLKGSFRSQKEYVLDTEGVDLRYILNFPGMDHIRSSSNDIVEIF 1351

Query: 1312 EVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP 1371
             +LG+EA RR L+ ELR +ISFDGSYVN RHL +L D MT+RG L++ITRHGIN+ + GP
Sbjct: 1352 RILGVEASRRILIQELRNLISFDGSYVNSRHLYLLVDIMTHRGKLLSITRHGINKTEIGP 1411

Query: 1372 MMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEML 1425
            + +CSFEET+DIL  AA F  SD L+ ++ +++LGQL  +GTG   L+L+++ L
Sbjct: 1412 IAKCSFEETIDILYQAAAFGISDNLKSISASVLLGQLPLLGTGKIDLFLSEKKL 1465


>gi|156835819|ref|XP_001642173.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM 70294]
 gi|156112609|gb|EDO14315.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM 70294]
          Length = 1311

 Score = 1318 bits (3412), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/1249 (54%), Positives = 892/1249 (71%), Gaps = 67/1249 (5%)

Query: 319  GRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPE 378
            GRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP + +DQ+GVP SIA  LTYPE
Sbjct: 1    GRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPE 60

Query: 379  TVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERH 438
             VTPYNI+RL +LV  GP+  PG   AKY+IRD+G R+DLRY K++ D  L+ G+KVERH
Sbjct: 61   VVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDNGDRIDLRYSKRAGDIQLQYGWKVERH 117

Query: 439  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
            + D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS 
Sbjct: 118  IMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 177

Query: 499  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
            ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G RK+T RD+FIE D  +N+L W  D
Sbjct: 178  ETRAELSQLCAVPMQIVSPQSNKPCMGIVQDTLCGIRKLTLRDSFIEFDQVLNMLYWVPD 237

Query: 559  FDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKG 618
            +DG +PQP ILKP+PLWTGKQ+ ++ IPK I+L R      D    +L+  D  + +  G
Sbjct: 238  WDGVIPQPAILKPKPLWTGKQILSIAIPKGIHLQR-----FDEGTTMLSPKDNGMLVIDG 292

Query: 619  ELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            +++ G + KKT+G+S+G LIHV+  E GP    K  G+ Q +VN+WLL N FS GIGDTI
Sbjct: 293  QIVFGVVDKKTVGSSSGGLIHVVTREKGPQVCAKMFGNIQKVVNFWLLHNGFSTGIGDTI 352

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
            AD +TM+ I +TI++AK  V+ + K+AQ   L  + G T+ ESFE+ V + LN ARD+AG
Sbjct: 353  ADGETMKEITETIAEAKKKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAG 412

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
              A+ +L+++NN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI FGFVDRTLPHF+KD
Sbjct: 413  RLAEVNLNDTNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKD 472

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
            DY PES+GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+EDIMV
Sbjct: 473  DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMV 532

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEENWNPN 917
             YD T RNSLG+VIQF+YGEDG+D+ +IE Q++D++      F+K +R + M  E+    
Sbjct: 533  HYDSTTRNSLGNVIQFVYGEDGIDASYIEKQSIDTIGGSNQAFEKRYRIDLMSPEHSLDT 592

Query: 918  YMLQ---EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIW 974
             +L+   E I D+K    ++ + D E ++L  DR +    +   G+ +WPLPVN++R++ 
Sbjct: 593  TLLESGSEIIGDVK----IQSMLDEEYKQLVNDR-RFLRNVFIDGEQNWPLPVNIRRIVQ 647

Query: 975  NAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRST 1034
            NAQ+TF++D  +PSD+   +VV  V +L+ +L V+ G+  +  EAQ +A   F  LLRS 
Sbjct: 648  NAQQTFRIDHTKPSDLTIRDVVYGVKELESKLLVLRGKSKIIEEAQNDAITLFCCLLRSR 707

Query: 1035 FASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFH 1094
             A++RVL+E+RLT++AF+WV+  IES+FL+S+V PGEM+G +AAQSIGEPATQMTLNTFH
Sbjct: 708  LAARRVLEEYRLTKQAFDWVLSNIESQFLRSIVHPGEMVGVLAAQSIGEPATQMTLNTFH 767

Query: 1095 YAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRS 1154
            +AGV++K VT GVPRL+EI+NVAK +KTPS +V+L+P     +E+AK ++ A+E+TTL+S
Sbjct: 768  FAGVASKKVTSGVPRLKEILNVAKNMKTPSSTVYLEPEYAIDQEKAKFIRSAIEHTTLKS 827

Query: 1155 VTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI--APEKISPWLLRIELNREMMVDK 1212
            VT A+E++YDPDP  T+I +D E ++ ++ + D++   A +  SPWLLR+EL+R  M DK
Sbjct: 828  VTVASEIYYDPDPRSTVIPDDEEIIQLHFSLLDDETEKALDNQSPWLLRLELDRAAMNDK 887

Query: 1213 KLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKK 1272
             L+M  V EKI + F +DL  I+++DNADKLI+R R++    PK    +  AE+D  LKK
Sbjct: 888  DLTMGQVGEKIKETFKNDLFVIWSEDNADKLIIRCRVVR---PKSLDAETEAEEDHMLKK 944

Query: 1273 IESNMLTEMALR-----------------------------------GVNLLAVMCHEDV 1297
            IE+ ML  + LR                                   GVNLL VM    V
Sbjct: 945  IENTMLESITLRGVEDIERVVMMKYDRKMPSENGAYEKVPEWVLETDGVNLLEVMTVTGV 1004

Query: 1298 DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLM 1357
            D  R  +N  I+I EVLGIEA R AL  E+  VI+ DGSYVNYRH+A+L D MT +G L 
Sbjct: 1005 DPTRIYTNSFIDITEVLGIEAGRAALYREVYNVIASDGSYVNYRHMALLVDVMTTQGSLT 1064

Query: 1358 AITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCS 1417
            ++TRHG NR++TG +MRCSFEETV+IL +A   AE D  RGV+EN++LGQ+AP+GTG   
Sbjct: 1065 SVTRHGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPVGTGAFD 1124

Query: 1418 LYLNDE-MLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPV 1476
            + +++E ++K   E ++    +G E G+TP  S  SG    D  +    +FSP L  S  
Sbjct: 1125 VMIDEESLIKYMPEQKITELEDGQEGGLTPY-SNESGLVNADIDLKDELMFSP-LVDSGS 1182

Query: 1477 TDAQ---FSPYVG---GMAFSPTSSPGYSPSSPGYSP-SSPGYSPTSPG 1518
            TDA    F+ Y G   G A SP ++ G SPSSPG+   SSPG+SPTSP 
Sbjct: 1183 TDAMAGGFTAYGGADYGGATSPFTAYGESPSSPGFGGVSSPGFSPTSPA 1231


>gi|119610589|gb|EAW90183.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
            CRA_c [Homo sapiens]
          Length = 1549

 Score = 1311 bits (3394), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 672/1180 (56%), Positives = 843/1180 (71%), Gaps = 80/1180 (6%)

Query: 435  VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHV 494
            VERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLNLSVT+PYNADFDGDEMN+H+
Sbjct: 25   VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 84

Query: 495  PQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM 554
            PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   RK TKRD F+E+   MN+LM
Sbjct: 85   PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 144

Query: 555  WWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKG---ILTAGD 610
            +   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT + H D+ D G    ++ GD
Sbjct: 145  FLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGD 204

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
            T V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  R F  + Q ++N WLL    
Sbjct: 205  TKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGH 264

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  LEP PG T+ ++FEN+VN++L
Sbjct: 265  TIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRIL 324

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ A VGQQNVEGKRIPFGF  R
Sbjct: 325  NDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHR 384

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+
Sbjct: 385  TLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLI 444

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q L +LK     F+K FRF+  
Sbjct: 445  KSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYT 504

Query: 911  EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLK 970
             E      + ++ + D+ +   +++  + E +++  DR  L   I  +GDS   LP NL 
Sbjct: 505  NERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRV-IFPTGDSKVVLPCNLL 563

Query: 971  RLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 1030
            R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V G+DPLS +AQ+NATL FNI 
Sbjct: 564  RMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIH 623

Query: 1031 LRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1090
            LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PGEM+G +AAQS+GEPATQMTL
Sbjct: 624  LRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTL 683

Query: 1091 NTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYT 1150
            NTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL        ERAK++ C LE+T
Sbjct: 684  NTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHT 743

Query: 1151 TLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMV 1210
            TLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+A  +ISPWLLR+EL+R+ M 
Sbjct: 744  TLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVA--RISPWLLRVELDRKHMT 801

Query: 1211 DKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDE---SAEDD 1267
            D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIMN +  K +  +E     +DD
Sbjct: 802  DRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDD 861

Query: 1268 VFLKKIESNMLTEMALR----------------------------------------GVN 1287
            VFL+ IESNMLT+M L+                                        GV+
Sbjct: 862  VFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVS 921

Query: 1288 LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILC 1347
            L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL  VISFDGSYVNYRHLA+LC
Sbjct: 922  LMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLC 981

Query: 1348 DTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQ 1407
            DTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++AA   ESD ++GV+ENIMLGQ
Sbjct: 982  DTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQ 1041

Query: 1408 LAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLEFGMTPARSPVSG-----TPY 1456
            LAP GTG   L L+ E  K  +E+   +P        G+ FG  P  SP+ G     TP+
Sbjct: 1042 LAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAP--SPMGGISPAMTPW 1099

Query: 1457 HDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPS------SP 1510
            + G  +P Y        SP   +  +P  G   FSP+++   S  SPGYSP+      SP
Sbjct: 1100 NQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAASDASGFSPGYSPAWSPTPGSP 1151

Query: 1511 GYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
            G    S  Y P SPG    SP YSPTSP Y P SP GY+P
Sbjct: 1152 GSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1189



 Score =  174 bits (442), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1432 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1491

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1492 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1542



 Score =  173 bits (439), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1432 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1491

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1492 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1542



 Score =  173 bits (439), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1432 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1491

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1492 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1542



 Score =  172 bits (436), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1432 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1491

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1492 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1542



 Score =  162 bits (409), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1432 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1490

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1491 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1542



 Score =  159 bits (402), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1432 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1491

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1492 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1542



 Score =  137 bits (346), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1432 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1479

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1480 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1524

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1525 GYSPTSPTYS 1534


>gi|300706227|ref|XP_002995402.1| hypothetical protein NCER_101719 [Nosema ceranae BRL01]
 gi|239604482|gb|EEQ81731.1| hypothetical protein NCER_101719 [Nosema ceranae BRL01]
          Length = 1612

 Score = 1311 bits (3392), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 711/1515 (46%), Positives = 962/1515 (63%), Gaps = 121/1515 (7%)

Query: 11   EVAKVRM--VQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCET 68
            E+ K R+  +QFG+ SP+EIR+ SVVQ+ H ET E G PKPGGL D ++GT +R   C +
Sbjct: 4    EIVKKRITSIQFGLFSPEEIRKASVVQVIHPETMENGFPKPGGLIDLKMGTTERAFLCSS 63

Query: 69   CTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR 128
            C  +   CPGHFGH+EL KPMFH+G+M  +  I+  VC+ CSKI  D+           +
Sbjct: 64   CEKDNFSCPGHFGHIELTKPMFHVGYMSKIKKILECVCYYCSKIKIDK-----------K 112

Query: 129  NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAE 188
            + K  L  + ++CK K+ CEG            E  +    GCG +QP +  EGM ++A 
Sbjct: 113  HLKKDLNFVWNSCKTKSVCEG------------ELTEAGFSGCGNKQPVIKKEGMGLVAF 160

Query: 189  YKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV 248
             K +           E  + K  L  ERV  +LK+ISDED   LG + KY++PDW+++ V
Sbjct: 161  MKGE-----------EDSDGKVILNGERVHNILKKISDEDSTYLGFDTKYSKPDWLVITV 209

Query: 249  LPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQF 298
            L +PPP VRPS          DDLTH+LA I++ N  L++ E  GAP H+I ++ QLLQF
Sbjct: 210  LLVPPPSVRPSIVMEGMLRAEDDLTHKLADIVKANTYLKKYELEGAPGHVIRDYEQLLQF 269

Query: 299  HIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPT 358
            HIAT  DN+L GQP+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSAR+VITPD  
Sbjct: 270  HIATMIDNDLSGQPQALQKSGRPIKSISARLKGKEGRVRGNLMGKRVDFSARSVITPDAN 329

Query: 359  INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDL 418
            I+++++GVP  IA   T+PET+TPYNIERL  LV  GP+  PG   A Y+IR DGQR+DL
Sbjct: 330  ISLEEVGVPLEIAKIHTFPETITPYNIERLTRLVSNGPNEYPG---ANYVIRSDGQRIDL 386

Query: 419  RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVT 478
             +     D  LE GY VERH+ +GD VLFNRQPSLHKMS+MGH +++M   TFRLNLS T
Sbjct: 387  NF--NRGDIKLEEGYIVERHMQNGDVVLFNRQPSLHKMSMMGHFVRVMEGKTFRLNLSCT 444

Query: 479  SPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKIT 538
            SPYNADFDGDEMN+H+PQS+ T+AE+ EL +V K ++SPQSNRPVMGIVQD+L   R  T
Sbjct: 445  SPYNADFDGDEMNLHMPQSYNTKAELEELCLVSKQVLSPQSNRPVMGIVQDSLTSLRLFT 504

Query: 539  KRDTFIEKDVFMNILM-----WWEDFDGK----------VPQPTILKPRPLWTGKQVFNL 583
             RDTF +K   M +L       +E+F+ +          +  PTI  P+ LWTGKQ+F+ 
Sbjct: 505  LRDTFFDKRETMQLLYSINLSKYENFNNEDMHKTSIMDLLNYPTISYPKKLWTGKQIFSY 564

Query: 584  IIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            I+P   N+  +A  +  ++  +    DT+V I  GELLSG + KK++GT+ G LIH+I  
Sbjct: 565  ILP---NIVYSAVSNEHDENDLENLKDTVVIIRNGELLSGIIDKKSVGTTQGGLIHIIAN 621

Query: 644  EVGPDAARKFLGHTQWLVNYWL-LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
            +        F   TQ ++N ++   NAFSIGIGD IA+ +TM  +  +I  AK  V+ LI
Sbjct: 622  DFSHKRITSFFDDTQKIMNKFITFINAFSIGIGDAIANKETMVQVQSSIENAKYQVEKLI 681

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
            ++AQ   LE  PG +M ESFE++VN +LN  RD +G+SA KSL+  NN++ MV AGSKGS
Sbjct: 682  ERAQRNKLERLPGMSMKESFESQVNYILNKPRDISGTSASKSLNFCNNMRTMVLAGSKGS 741

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
            FINISQ+TAC+GQQNVEGKRIPFGF  R+LPHF+K DY  +SRGFVENSY++GL P+EF+
Sbjct: 742  FINISQVTACLGQQNVEGKRIPFGFNYRSLPHFSKGDYSGKSRGFVENSYVKGLAPEEFY 801

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAMGGREGLIDTA+KT+ETGYIQRRLVKAMED  V  D +VR + G + Q+ YGEDG D
Sbjct: 802  FHAMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVGLDRSVRGANGFIYQYEYGEDGFD 861

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQ 942
            + ++E Q +     K   F   F  E        NY +++     +  K L  V D E+Q
Sbjct: 862  ATYLEMQKIKLTNFKDLHFVDMFADE--------NYAIKKENVTEQIYKLL--VTDLELQ 911

Query: 943  KLEADRYQ-LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
            K+  D Y  L        + +   P N KR+I  A   FK +  +  D+ P  ++ ++ K
Sbjct: 912  KVLYDEYDWLYKNALKYENQNIASPCNFKRIIDTA--IFKFNCEK-GDVSPYYILSSLQK 968

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L E L               N  L   +L++   + KR+L E++L+ EAF+W+I EI+ +
Sbjct: 969  LSESL--------------FNRNLLLKLLVKINLSVKRILNEYKLSLEAFKWIIDEIKRK 1014

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
              +S++AP EM+G +AAQS+GEPATQMTLNTFH AGVSA N+T+GVPRL+EIINVAK IK
Sbjct: 1015 VNKSIIAPSEMVGTLAAQSVGEPATQMTLNTFHLAGVSA-NITMGVPRLKEIINVAKNIK 1073

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TP + ++L+   N T E AK +Q  +EY+ ++S+ E +E++YDP    T+IEED +FVKS
Sbjct: 1074 TPCMKIYLQEPYNKTLEMAKKIQGDIEYSDIKSICEFSEIFYDPVVEDTLIEEDKDFVKS 1133

Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
            Y++ PDE++   ++  +++RI ++R  +V + L M  +   +++ F      I +D+NA 
Sbjct: 1134 YFDFPDENLDFLQMPKYIIRIIVDRSKLVSRGLKMDDLIACVHKAFPKKFHIISSDENAR 1193

Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLK-----KIESNMLTE--------MALRGVNL 1288
            KLI+R R +  E    ++ +      + LK     KI+   +TE        +   GV L
Sbjct: 1194 KLIIRFRCITPEDNNIDIYNVYYNKVINLKITGYNKIKKVYITEDKEQKNWFLQTDGVCL 1253

Query: 1289 LAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCD 1348
              +M H D+     TSN + EI+EVLGIEA R  +L EL +VI  +GSYVN+RH+++L D
Sbjct: 1254 REIMSHPDICGHLVTSNDINEIVEVLGIEAARETILQELTLVIDGNGSYVNHRHISLLAD 1313

Query: 1349 TMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQL 1408
             MT +G+L  ITRHG+N+   G + R SFEETVDILLDAA  AE++  +G+TENIM+GQL
Sbjct: 1314 VMTMKGYLTGITRHGVNKVGFGALKRASFEETVDILLDAAYAAENNVTKGITENIMMGQL 1373

Query: 1409 APIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTP-ARSPVSGT-PYHDGMMSPGYL 1466
            AP+GTG   + L+   L+ AI L  P Y    E   TP   SPVS +     G  SP YL
Sbjct: 1374 APLGTGIGDILLDVSKLEFAIPLSKPDY--NYEDVDTPFIYSPVSESQSISSGNWSPAYL 1431

Query: 1467 -----FSPNLRLSPV 1476
                 +SP L L  V
Sbjct: 1432 AEESKYSPKLSLFSV 1446


>gi|449687727|ref|XP_002164354.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
            1, partial [Hydra magnipapillata]
          Length = 1595

 Score = 1300 bits (3364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 671/1208 (55%), Positives = 832/1208 (68%), Gaps = 90/1208 (7%)

Query: 435  VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHV 494
            VERH+ D D V+FNRQP+LHKMS+MGHR+K++P+STFRLNLSVT+PYNADFDGDEMNMHV
Sbjct: 1    VERHIIDNDVVVFNRQPTLHKMSMMGHRVKVLPWSTFRLNLSVTTPYNADFDGDEMNMHV 60

Query: 495  PQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM 554
            PQS ETRAE+ E++MVP+ I++PQSN+P MGIVQD+L    K TKRD F+EKDV MN+L+
Sbjct: 61   PQSMETRAEITEILMVPRQIITPQSNKPCMGIVQDSLCAVYKFTKRDVFLEKDVVMNLLL 120

Query: 555  WWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG----ILTAGD 610
            W   +DGK P P ILKP+PLWTGKQ+F+L+IP  IN     + H D++       ++ GD
Sbjct: 121  WIRKWDGKFPIPAILKPKPLWTGKQIFSLLIPPGINHSGEHSAHPDDESNGPYCHISPGD 180

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
            T V IE G L+SG +CKKT+G S  SL+H+I  E GP+ A++F G  Q + N W L    
Sbjct: 181  TKVLIEDGTLISGIICKKTVGPSGNSLVHIIMAEEGPEIAKEFYGDLQKVTNNWFLVEGH 240

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGD IAD  T   I +TI K+K  V  +I+QA    LEP PG ++ ++FENKVN++L
Sbjct: 241  SIGIGDCIADQDTYADIQNTIKKSKQEVNEVIEQAHTNQLEPTPGNSLRQTFENKVNRIL 300

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N  RD+ G+SAQKSLS  N+ K+MV AGSKGS INISQ+ A VGQQNVEGKRIPFGF  R
Sbjct: 301  NECRDKTGASAQKSLSVFNSFKSMVVAGSKGSNINISQIIAVVGQQNVEGKRIPFGFRHR 360

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKTSETGYIQRRL+
Sbjct: 361  TLPHFNKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTSETGYIQRRLI 420

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KAME +MV YDGT+RNS   +IQ  YGEDGM    IE Q L S+K   + F++ F F++ 
Sbjct: 421  KAMESVMVAYDGTIRNSNRYIIQLCYGEDGMAGERIEGQELSSIKPSNAMFNRMFYFDIS 480

Query: 911  EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLK 970
             E    N + ++ + ++ +     +  + E ++L+ DR ++   I  +G+    LPV L 
Sbjct: 481  NERRLKNVLNEDVLRNIYSDSTTTNAIEEEFRQLKDDR-EMLRNIFPNGNKKVNLPVKLS 539

Query: 971  RLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 1030
            RLIWN+QK FKV+ R  +D+ P++V+  +  L +RL VV GED LS EAQ NAT+ F I 
Sbjct: 540  RLIWNSQKMFKVNLRAQTDLSPLKVINDIKDLTKRLLVVKGEDKLSKEAQLNATMLFQIH 599

Query: 1031 LRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1090
            LRST  SKRV++E RLT EAF+W++GE+ESRF  +   PGEM+G +AAQS+GEPATQMTL
Sbjct: 600  LRSTLCSKRVIEEFRLTSEAFDWLLGEVESRFNLAQAQPGEMVGALAAQSLGEPATQMTL 659

Query: 1091 NTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYT 1150
            NTFHYAGVSAKNVTLGVPRL+EIINV+KK KTPSL+VFL        E AK+V C LE+T
Sbjct: 660  NTFHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLLGQAARDAEHAKDVLCRLEHT 719

Query: 1151 TLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMV 1210
            TLR VT  T ++YDPDP  T+I ED +FV  YYEMPD D  P ++SPWLLRIEL+R+ M 
Sbjct: 720  TLRKVTANTAIFYDPDPQNTVIAEDQDFVNVYYEMPDFD--PARMSPWLLRIELDRKRMT 777

Query: 1211 DKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESA----ED 1266
            D KLSM  +AEKINQ F DDL CI+NDDNA+KL+LRIRIM        + DE      ED
Sbjct: 778  DSKLSMEQIAEKINQGFGDDLNCIYNDDNAEKLVLRIRIMGSGDDSKNMEDEEQLDKMED 837

Query: 1267 DVFLKKIESNMLTEMALRGV---------------------------------------- 1286
            DVFL+ IE+NMLT+M L+G+                                        
Sbjct: 838  DVFLRCIEANMLTDMTLQGIESIAKVYMHLPSEESKKRVIFNAEGEFKHLQEWILETDGN 897

Query: 1287 NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAIL 1346
             L+ V+  +D+D  RTTSN + EI  +LGIEAVR+++  E+  VISFDGSYVNYRHL++L
Sbjct: 898  GLMKVLSQKDIDPVRTTSNDICEIFSILGIEAVRKSIEKEMDHVISFDGSYVNYRHLSLL 957

Query: 1347 CDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLG 1406
            CD MT +GHLMAITRHGINR + G +MRCSFEETVD+L++AA  AE+D LRGV+ENI+LG
Sbjct: 958  CDIMTSKGHLMAITRHGINRQEVGCLMRCSFEETVDVLVEAAFHAEADNLRGVSENIILG 1017

Query: 1407 QLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTP--------ARSPVSG----- 1453
            QL PIGTG  +L L+ E  K  +E+ L +  EG   GM P        A SP +      
Sbjct: 1018 QLPPIGTGCFNLMLDAEKCKEGMEIPL-NIGEG--HGMMPGGGVFFGSAASPSNAMSPQM 1074

Query: 1454 TPYHDGMMSPGY--LFSPNL---------RLSPVTDAQFSPYVGGMAFSPTSSPG----- 1497
            TP++ G  +PGY   +SP L           SP   +  S +     FSP  SP      
Sbjct: 1075 TPWNQG-HTPGYGDGWSPALGSGMTPGAASFSPSAHSDASGFSPAGGFSPAWSPQDSMSL 1133

Query: 1498 YSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1551
             SP S  Y PS      SP YSP SP ++P SP  SP+SPGYSPTSP YSP+SPGYSPTS
Sbjct: 1134 GSPDSSPYIPSPSRNVMSPSYSPNSPAFNPQSPAMSPSSPGYSPTSPLYSPTSPGYSPTS 1193

Query: 1552 PAYSPTSP 1559
            P+YSPTSP
Sbjct: 1194 PSYSPTSP 1201



 Score =  228 bits (581), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 167/240 (69%), Positives = 186/240 (77%), Gaps = 13/240 (5%)

Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
            YSPTSP YSPTSP YSPTSPSYSP+SPSYSP+SP+YSPTSP+YSPTSP+YSPTSPAYSPT
Sbjct: 1364 YSPTSPKYSPTSPKYSPTSPSYSPSSPSYSPSSPNYSPTSPTYSPTSPTYSPTSPAYSPT 1423

Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1673
            SPAYSPTSPAYSPTSP YSPTSP+YSPTSP YSPTSP YSPTSP YSPTSPAYSPTS GY
Sbjct: 1424 SPAYSPTSPAYSPTSPVYSPTSPAYSPTSPKYSPTSPKYSPTSPIYSPTSPAYSPTSTGY 1483

Query: 1674 SPTSPSYSPTSPTYSPTSPSYNPQSAKYSP-SLAYSPSSPRLSPASPYSPTSPNYSPTSS 1732
            SPTSP YSP+SP YSPT+P Y+P S KYSP S  YSPS+P     +  S  S NYSP   
Sbjct: 1484 SPTSPEYSPSSPKYSPTTPQYSPTSPKYSPASPTYSPSTP-----TDKSVGSINYSPLEP 1538

Query: 1733 SYSPTSPSYSP-SSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQY 1791
             YSP +P+YSP  +PTYSP     +G    + SP    YSPS   SPS PG +P  T ++
Sbjct: 1539 DYSPGTPTYSPDGTPTYSPDGRGFSGTAAKNISPM--DYSPS---SPSGPG-TPEETLKF 1592



 Score =  209 bits (533), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 145/212 (68%), Positives = 163/212 (76%), Gaps = 18/212 (8%)

Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
            YSPTSP YSPTSP YSPTSPSYSP+SP+YSP+SP YSPTSP YSPTSP+YSPTSP+YSPT
Sbjct: 1364 YSPTSPKYSPTSPKYSPTSPSYSPSSPSYSPSSPNYSPTSPTYSPTSPTYSPTSPAYSPT 1423

Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY 1701
            SP+YSPTSP+YSPTSP YSPTSPAYSPTSP YSPTSP YSPTSP YSPTSP+Y+P S   
Sbjct: 1424 SPAYSPTSPAYSPTSPVYSPTSPAYSPTSPKYSPTSPKYSPTSPIYSPTSPAYSPTST-- 1481

Query: 1702 SPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNP 1761
                 YSP+SP       YSP+SP YSPT+  YSPTSP YSP+SPTYSPS+P +   G+ 
Sbjct: 1482 ----GYSPTSPE------YSPSSPKYSPTTPQYSPTSPKYSPASPTYSPSTPTDKSVGSI 1531

Query: 1762 DYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
            +YSP  P YSP        P YSP  T  Y+P
Sbjct: 1532 NYSPLEPDYSPGT------PTYSPDGTPTYSP 1557


>gi|119610588|gb|EAW90182.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
            CRA_b [Homo sapiens]
          Length = 1511

 Score = 1299 bits (3361), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 653/1141 (57%), Positives = 819/1141 (71%), Gaps = 68/1141 (5%)

Query: 435  VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHV 494
            VERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLNLSVT+PYNADFDGDEMN+H+
Sbjct: 25   VERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHL 84

Query: 495  PQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM 554
            PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   RK TKRD F+E+   MN+LM
Sbjct: 85   PQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLM 144

Query: 555  WWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKG---ILTAGD 610
            +   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT + H D+ D G    ++ GD
Sbjct: 145  FLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGD 204

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
            T V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  R F  + Q ++N WLL    
Sbjct: 205  TKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGH 264

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  LEP PG T+ ++FEN+VN++L
Sbjct: 265  TIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRIL 324

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ A VGQQNVEGKRIPFGF  R
Sbjct: 325  NDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHR 384

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+
Sbjct: 385  TLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLI 444

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q L +LK     F+K FRF+  
Sbjct: 445  KSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYT 504

Query: 911  EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLK 970
             E      + ++ + D+ +   +++  + E +++  DR  L   I  +GDS   LP NL 
Sbjct: 505  NERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREVLRV-IFPTGDSKVVLPCNLL 563

Query: 971  RLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 1030
            R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V G+DPLS +AQ+NATL FNI 
Sbjct: 564  RMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDPLSRQAQENATLLFNIH 623

Query: 1031 LRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1090
            LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++  PGEM+G +AAQS+GEPATQMTL
Sbjct: 624  LRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTL 683

Query: 1091 NTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYT 1150
            NTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL        ERAK++ C LE+T
Sbjct: 684  NTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHT 743

Query: 1151 TLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMV 1210
            TLR VT  T ++YDP+P  T++ ED E+V  YYEMPD D+A  +ISPWLLR+EL+R+ M 
Sbjct: 744  TLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVA--RISPWLLRVELDRKHMT 801

Query: 1211 DKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDE---SAEDD 1267
            D+KL+M  +AEKIN  F DDL CIFNDDNA+KL+LRIRIMN +  K +  +E     +DD
Sbjct: 802  DRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDD 861

Query: 1268 VFLKKIESNMLTEMALR----------------------------------------GVN 1287
            VFL+ IESNMLT+M L+                                        GV+
Sbjct: 862  VFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVS 921

Query: 1288 LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILC 1347
            L+ V+  +DVD  RTTSN ++EI  VLGIEAVR+AL  EL  VISFDGSYVNYRHLA+LC
Sbjct: 922  LMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLC 981

Query: 1348 DTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQ 1407
            DTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++AA   ESD ++GV+ENIMLGQ
Sbjct: 982  DTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQ 1041

Query: 1408 LAPIGTGDCSLYLNDEMLKNAIEL--QLPSYMEGLEFGMTPARSPVSGTPYHDGM-MSPG 1464
            LAP GTG   L L+ E  K  +E+   +P        GMTP  +  S +   D    SPG
Sbjct: 1042 LAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGRSGMTPGAAGFSPSAASDASGFSPG 1101

Query: 1465 Y----LFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYS 1520
            Y      +P    SP   + + P  GG       SP YSP+SP Y P SPG      GY+
Sbjct: 1102 YSPAWSPTPGSPGSPGPSSPYIPSPGGAM-----SPSYSPTSPAYEPRSPG------GYT 1150

Query: 1521 P 1521
            P
Sbjct: 1151 P 1151



 Score =  175 bits (443), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1394 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1453

Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
            SP YSPTSP YSPTSP YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1454 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1504



 Score =  174 bits (440), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)

Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1394 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1453

Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
            SP+YSPTSP YSPTSP YSPTSP    YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1454 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1504



 Score =  174 bits (440), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)

Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
            Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1394 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1453

Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
            SP+YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1454 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1504



 Score =  173 bits (438), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)

Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
            Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1394 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1453

Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
            SP+YSPTSP YSPTSP+YSPTSP  S     YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1454 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1504



 Score =  162 bits (411), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)

Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
            ++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1394 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1452

Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
            TSP YSPTSP YSPTSP+YSPTSP   +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1453 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1504



 Score =  159 bits (403), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)

Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
            Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1394 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1453

Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
            SPTYSPTSP Y+P S        YSP+SP+    S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1454 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1504



 Score =  138 bits (347), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)

Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP            
Sbjct: 1394 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1441

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
              Y+P+SP+      YSPTSP YSPTS  YSPTSP+YSP+SP   TYSP+S        P
Sbjct: 1442 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1486

Query: 1762 DYSPSSPQYS 1771
             YSP+SP YS
Sbjct: 1487 GYSPTSPTYS 1496


>gi|429962270|gb|ELA41814.1| hypothetical protein VICG_01166 [Vittaforma corneae ATCC 50505]
          Length = 1569

 Score = 1295 bits (3352), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 712/1668 (42%), Positives = 1014/1668 (60%), Gaps = 176/1668 (10%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANM 73
            +V  +QFG+ SP+EIR+ SVV I H ET E G PK  GL D R+GT +R   C+TC +  
Sbjct: 9    RVTSIQFGLFSPEEIRKGSVVHILHPETVENGIPKENGLIDLRMGTTERSFLCQTCNSTS 68

Query: 74   AECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNR 133
             EC GH+GH+EL+KPMFHIG++  +   +  VCF CSKI               +  K  
Sbjct: 69   FECVGHYGHIELSKPMFHIGYLAKIKKTLECVCFYCSKI---------------KGSKKN 113

Query: 134  LKKILDAC----KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEY 189
            L+  L+ C    K+K+ CEG            E + + K GCG +QP +  +G+ +IA  
Sbjct: 114  LRPGLEDCWTVLKSKSICEG------------EDIPEGKSGCGNRQPSIRKDGLNLIAFM 161

Query: 190  KAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL 249
            K      +D +      E K  L  ERV  +LK+I  ED   LG +P   RP+WM+L  +
Sbjct: 162  K------EDVDG-----EGKVVLNGERVYNILKKIPTEDSMFLGFDPDNCRPEWMMLTTI 210

Query: 250  PIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFH 299
             +PPP +RPS          DDLTH+LA I++ N  L++ E+ GAP+HI+ ++ QLLQFH
Sbjct: 211  IVPPPAMRPSIVLNGHLRAEDDLTHKLADIVKANAYLKKYEQEGAPSHIVRDYEQLLQFH 270

Query: 300  IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTI 359
            +AT  DN++ GQP+A Q++GRP+KSI +RLK KEGRIRGNLMGKRVDFSAR+VI+PDP I
Sbjct: 271  LATLVDNDIGGQPQALQKNGRPLKSITARLKGKEGRIRGNLMGKRVDFSARSVISPDPLI 330

Query: 360  NIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLR 419
            ++ Q+GVP SIA   T+PE V  +NI+ L++LV  GP+  PG   A Y+IR DGQR+DL 
Sbjct: 331  SVGQVGVPISIAKIHTFPEKVNSFNIDYLQKLVNRGPNEHPG---ANYVIRSDGQRIDLN 387

Query: 420  YLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTS 479
            +     D  LE G+ VERH+ D D VLFNRQPSLHKMS+MGHR+K+M   +FRLNLS TS
Sbjct: 388  F--NRFDLKLENGFTVERHMQDNDEVLFNRQPSLHKMSMMGHRVKVMSGKSFRLNLSATS 445

Query: 480  PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 539
            PYNADFDGDEMN+H+PQS+ T+AE+  L  V K IVSPQSN+PV+GIVQDTL+G R +T 
Sbjct: 446  PYNADFDGDEMNLHMPQSYATKAELGLLTAVDKQIVSPQSNKPVIGIVQDTLVGSRLLTV 505

Query: 540  RDTFIEKDVFMNILMWWEDFDGK------VPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
            RD F  K   MN+L  +  F  K        +PTIL+P  LWTGKQ+F+ I+P+   +F 
Sbjct: 506  RDAFFNKREAMNLLYSFNSFGKKNEDFLDYLRPTILQPVELWTGKQLFSAILPR---IFY 562

Query: 594  TAAWHAD----NDKGI--LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
                +AD    ++KG   +   D+   I  G LL+G + KK++G   G LIH+I+ + G 
Sbjct: 563  MRDSNADISEMDNKGWNSINLTDSTAIIRNGVLLAGPIDKKSVGAQQGGLIHIIFNDYGS 622

Query: 648  DAARKFLGHTQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
            +AA+ F+ + Q +V ++LL  ++FS+GIGD +AD +T+      + +A + V  +I   +
Sbjct: 623  EAAKNFIDNIQRIVTHFLLHISSFSVGIGDCVADNRTLTLCKSAVKRAMSEVDEIIALTK 682

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
               LE  PG T+ E+FE++VN +LN AR+ +G+SAQ SL+  N +KAMV +GSKGS+INI
Sbjct: 683  KNELEKMPGMTLSETFESRVNVILNKARNISGTSAQNSLNSCNYMKAMVLSGSKGSYINI 742

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQ+  C+GQQNVEGKRIPFGF +R+LPHF K D+  +SRGFV+NSYL G+ P EFFFHAM
Sbjct: 743  SQIITCLGQQNVEGKRIPFGFFERSLPHFYKYDFSAKSRGFVQNSYLSGMDPDEFFFHAM 802

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GGREG+IDTA+KT+ETGYIQRRLVKA+ED +V +D +VRN  GD+ QF YG+DG D+ ++
Sbjct: 803  GGREGIIDTAIKTAETGYIQRRLVKALEDAIVHHDFSVRNGRGDIYQFSYGDDGFDATYL 862

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
            E+  +     K+  F   F    D     P+ +  +    L+   +L+ + D E + L A
Sbjct: 863  ENVVVPIDNFKERYFIDMF--GDDSHAIFPHQVSTDVYQLLRDDIDLQKLLDKEYEYLYA 920

Query: 947  DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
            +R  L          S+P PVN+ R++   +KT             +E +     L    
Sbjct: 921  NRNLLK--------DSYPSPVNISRILSKYKKT------------TIESISPYTILNSFN 960

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             ++ G   L    + +  + F +L               L+   F  V+ EI+++ L++ 
Sbjct: 961  SIMTGNKRLDYYIRLSLNVKFVLL--------------NLSPADFNAVLSEIKTKILRAK 1006

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
            V   EM+G +AAQS+GEPATQMTLNTFH AGV A  VT+GVPRL EIIN+AK IKTPS+ 
Sbjct: 1007 VNANEMVGTLAAQSVGEPATQMTLNTFHLAGV-ASTVTMGVPRLNEIINLAKSIKTPSMQ 1065

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            +FL   + +  E A+ VQ  +E+ +L+ V E +++ YDP    T I +D EFV++Y+EMP
Sbjct: 1066 IFLNKPLGTDIENARRVQNQIEFLSLKMVCEMSQILYDPKIRTTSIGDDREFVETYFEMP 1125

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
            DEDI  + +S +++R+ ++R  MV + L++  ++ KI + +   +  I +D+N ++L++R
Sbjct: 1126 DEDIDFDLLSKFVIRLVISRSSMVTRGLTLEFISSKIRKLYGSGIHIITSDENDERLVIR 1185

Query: 1247 IRIM-------------NDEAPKGELNDESAEDDVFLKKIESNMLTEMALR--GVNLLAV 1291
             R                 E  K  L   +     +L  +     +E  L+  G++ L+V
Sbjct: 1186 ARFFASSEETLSSLKEAQAEILKIHLQGHTQIKKAYLTNLNKLDKSEWCLQTDGIDFLSV 1245

Query: 1292 MCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS-YVNYRHLAILCDTM 1350
            +   ++D  R  +N +  I  VLG+EA R+++L+EL +VI  +GS YVN+RH+++L D M
Sbjct: 1246 LSAPNIDGTRVMANDIYVIYSVLGVEAARQSILNELSLVIEDNGSSYVNHRHMSLLADVM 1305

Query: 1351 TYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAP 1410
            T +G+L  ITRHG++R     + R SFEETVD+LLDAA  +E D ++GV+ENIMLGQL P
Sbjct: 1306 TVKGYLTGITRHGVSRQSASVLKRASFEETVDVLLDAAANSELDAVKGVSENIMLGQLPP 1365

Query: 1411 IGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPN 1470
            +GTG+  + L+ +     IE  +P Y+                +P  +GM +P Y  S +
Sbjct: 1366 VGTGNVDIVLDIK----KIEHIIPRYV----------------SPSKEGMSAPLYSPSSD 1405

Query: 1471 LRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTS 1530
              +S  +            +SP  + G+SP            SP S G+SP   GY+   
Sbjct: 1406 SVVSWSSGN----------YSPIGTGGFSP-----------MSPLSAGFSPDYSGYN--- 1441

Query: 1531 PGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1590
               S  S TYSP+S GY+  SP Y+ TS  Y+P +P+++P SP+Y+P +  Y+PTS   S
Sbjct: 1442 ---SIQSQTYSPTSAGYNIRSPVYNATSQVYNPRTPNFAPVSPTYNPMTSMYAPTSFDTS 1498

Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1638
             +S  + PTSPSY+P SP+ SP SP Y  +   Y P S SYSP +P +
Sbjct: 1499 LSSDHHKPTSPSYTPLSPSNSPASPRYYGS---YEPASSSYSPATPGF 1543



 Score = 98.2 bits (243), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/133 (43%), Positives = 82/133 (61%), Gaps = 6/133 (4%)

Query: 1588 SYSPT-SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1646
            +YSP  +  +SP SP  +  SP YS  +   S T   YSPTS  Y+  SP Y+ TS  Y+
Sbjct: 1414 NYSPIGTGGFSPMSPLSAGFSPDYSGYNSIQSQT---YSPTSAGYNIRSPVYNATSQVYN 1470

Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA 1706
            P +P+++P SP+Y+P +  Y+PTS   S +S  + PTSP+Y+P SPS +P S +Y  S  
Sbjct: 1471 PRTPNFAPVSPTYNPMTSMYAPTSFDTSLSSDHHKPTSPSYTPLSPSNSPASPRYYGS-- 1528

Query: 1707 YSPSSPRLSPASP 1719
            Y P+S   SPA+P
Sbjct: 1529 YEPASSSYSPATP 1541



 Score = 91.7 bits (226), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/134 (43%), Positives = 79/134 (58%), Gaps = 7/134 (5%)

Query: 1610 YSPT-SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
            YSP  +  +SP SP  +  SP YS  +   S  S +YSPTS  Y+  SP Y+ TS  Y+P
Sbjct: 1415 YSPIGTGGFSPMSPLSAGFSPDYSGYN---SIQSQTYSPTSAGYNIRSPVYNATSQVYNP 1471

Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP-SLAYSPSSPRLSPASPYSPTSPNY 1727
             +P ++P SP+Y+P +  Y+PTS   +  S  + P S +Y+P SP  SPASP    S  Y
Sbjct: 1472 RTPNFAPVSPTYNPMTSMYAPTSFDTSLSSDHHKPTSPSYTPLSPSNSPASPRYYGS--Y 1529

Query: 1728 SPTSSSYSPTSPSY 1741
             P SSSYSP +P +
Sbjct: 1530 EPASSSYSPATPGF 1543



 Score = 91.3 bits (225), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 33/161 (20%)

Query: 1624 YSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
            YSP  +  +SP SP  +  SP YS  +   S  S +YSPTS  Y+  SP Y+ TS  Y+P
Sbjct: 1415 YSPIGTGGFSPMSPLSAGFSPDYSGYN---SIQSQTYSPTSAGYNIRSPVYNATSQVYNP 1471

Query: 1683 TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYS 1742
             +P ++P SP+YNP +                   S Y+PTS + S +S  + PTSPSY+
Sbjct: 1472 RTPNFAPVSPTYNPMT-------------------SMYAPTSFDTSLSSDHHKPTSPSYT 1512

Query: 1743 PSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGY 1783
            P SP+ SP+SP   G     Y P+      S+ YSP+ PG+
Sbjct: 1513 PLSPSNSPASPRYYGS----YEPA------SSSYSPATPGF 1543



 Score = 50.4 bits (119), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 41/135 (30%)

Query: 1666 YSPT-SPGYSPTSPSYSPTSPTYSPTSPSYNP-QSAKYSPSLAYSPSSPRLSPASPYSPT 1723
            YSP  + G+SP SP  +  SP YS     YN  QS  YSP+            ++ Y+  
Sbjct: 1415 YSPIGTGGFSPMSPLSAGFSPDYS----GYNSIQSQTYSPT------------SAGYNIR 1458

Query: 1724 SPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--------G 1775
            SP Y+ TS  Y+P +P+++P SPTY+P +                 Y+P++         
Sbjct: 1459 SPVYNATSQVYNPRTPNFAPVSPTYNPMTS---------------MYAPTSFDTSLSSDH 1503

Query: 1776 YSPSAPGYSPSSTSQ 1790
            + P++P Y+P S S 
Sbjct: 1504 HKPTSPSYTPLSPSN 1518


>gi|297271809|ref|XP_001118060.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Macaca
            mulatta]
          Length = 1097

 Score = 1286 bits (3329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/1086 (57%), Positives = 804/1086 (74%), Gaps = 37/1086 (3%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILSKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            L   I  +GDS   LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V 
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G+DPLS +AQ+NATL FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++   G
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIFGFG 1084

Query: 1071 EMIGCV 1076
              IG +
Sbjct: 1085 VCIGVL 1090


>gi|337263122|gb|AEI69272.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
            hellem]
          Length = 1478

 Score = 1281 bits (3316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 701/1559 (44%), Positives = 958/1559 (61%), Gaps = 151/1559 (9%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANM 73
            +++ +QFG+ SP+EIR  S   I H E  E G PK GGL D R+GT DR   C++C  + 
Sbjct: 9    QIKSIQFGLFSPEEIRNGSAALIVHPEVMESGVPKVGGLIDLRMGTTDRMYLCQSCGGDN 68

Query: 74   AECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNR 133
              CPGHFGH+EL KPMFH+G++  +  ++  VCF CSKI            +  R  K+ 
Sbjct: 69   FSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKI-----------KIPKRGAKST 117

Query: 134  LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQR 193
            L  +    K K  CEG            E +   + GCG +QP +  EG+ ++A  K + 
Sbjct: 118  LNSVWSMSKGKAVCEG------------EVVGDERSGCGNRQPVVKKEGLTLVAFMKGE- 164

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
                      E  E K  L  ERV  + K+ISDEDC  +G + KY+RP+WMIL VL +PP
Sbjct: 165  ----------ESNEGKVMLNGERVYSIFKKISDEDCVYMGFDLKYSRPEWMILTVLLVPP 214

Query: 254  PPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
            P VRPS          DDLTH+LA II+ N  L++ E+ GAP HI+ ++ QLLQFH+AT 
Sbjct: 215  PSVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATL 274

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP+A Q+SGRP+KS+ +RLK KEGRIRGNLMGKRVDFSARTVITPDP I++++
Sbjct: 275  IDNDIGGQPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPNISLEE 334

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP  +A   T+PE VT +NI+RL++LV  GP+  PG   A Y++R DGQ++DL + K 
Sbjct: 335  VGVPLEVAKIHTFPEKVTSFNIDRLEKLVRTGPNEHPG---ANYVLRSDGQKIDLNFNK- 390

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
             SD  LE GY VERH+  GD VLFNRQPSLHKMS+M H  ++M   TFRLNLSVTSPYNA
Sbjct: 391  -SDIKLEEGYVVERHMQTGDVVLFNRQPSLHKMSMMAHYARVMDDKTFRLNLSVTSPYNA 449

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+H+PQS+ ++AE+ EL +V K I+SPQSN+PVMGIVQDTL G R  T RDTF
Sbjct: 450  DFDGDEMNLHMPQSYTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTF 509

Query: 544  I-EKDVFM-----NI--------------LMWWEDFD--GKVPQPTILKPRPLWTGKQVF 581
            + E++V +     NI              L   +D+D    + +P I KP  LWTGKQ+ 
Sbjct: 510  LNEREVMLLLYAVNIEFCDTPPGSTGYIGLRRTKDYDIMKVLKRPAIAKPMRLWTGKQIL 569

Query: 582  NLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            + ++P   N+  T      ND+      DT V I+ G + SG + KK  G + G L+H+I
Sbjct: 570  SFVLP---NMNYTGFSSEHNDEDSENINDTKVIIQDGYIHSGVIDKKAAGATQGGLVHII 626

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKN 700
            + + GP  A +F    Q ++N ++   + FSIGIGDTIADAKT++ + + I KAK  V  
Sbjct: 627  FNDFGPKRAAQFFNGVQRMINVFMTGIHTFSIGIGDTIADAKTVKMVEEAIRKAKEEVSV 686

Query: 701  LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760
            +I+ A+   LE  PG TM ESFE+ +N VLN ARD +G+SAQ+SLS +NN+K MV AGSK
Sbjct: 687  IIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSGNNNMKTMVLAGSK 746

Query: 761  GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 820
            GSFINISQ+TACVGQQNVEGKRIPFGF  RTLPHF KDDY   SRGFVENSYL GL P+E
Sbjct: 747  GSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGRSRGFVENSYLTGLDPEE 806

Query: 821  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 880
            FFFHAMGGREGLIDTA+KT+ETGYIQRRLVKA+ED +V+ D +VR+  G V Q  YGEDG
Sbjct: 807  FFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQVKYGEDG 866

Query: 881  MDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVF 937
             D+ ++ESQ +D        F K +  +M  +         + +E    L +  +L+ + 
Sbjct: 867  FDATFLESQKVDV-----KNFAKRYCIDMFGDGKLAITQGQVSEEVYGMLSSDVDLQKLL 921

Query: 938  DAEVQKLEADRYQ-----LATEIATSGD--------SSWPLPVNLKRLIWNAQKTFKVDP 984
            D E + L  + ++        EI    D        S+   P N  RL+  A++ F +  
Sbjct: 922  DQEYEWLVGEIFEGPPPISPGEIDIEQDYQVKEVYKSAVMSPCNFTRLLATAKRAFHLS- 980

Query: 985  RRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEH 1044
                D+ P  ++EA   L    K++                  N+L+R+    KRVL EH
Sbjct: 981  --VGDVSPYYILEAHKNLMTSNKIL------------------NVLIRTNLNVKRVLIEH 1020

Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
            +L  EAF WV+   +++ L++ + P EM+G +AAQS+GEPATQMTLNTFH AGVS+  VT
Sbjct: 1021 KLNTEAFNWVVEMTKAKILKARITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSS-TVT 1079

Query: 1105 LGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYD 1164
            +GVPRL+EI NV K +KTPS+ ++L      T E AK +Q  +E   ++ +  ++E++YD
Sbjct: 1080 MGVPRLKEIFNVTKNLKTPSMKIYLDKDHCKTIESAKAIQNEIECLCVKDLCLSSEIYYD 1139

Query: 1165 PDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKIN 1224
            P+  GT I+ED +FV++Y+E PD+D+    +SP+L+R+ ++R  ++ +  +M  VA  I 
Sbjct: 1140 PEITGTEIDEDKDFVETYFEFPDDDVDFSCLSPFLIRLIVDRAKLIGRGTNMEYVAASIK 1199

Query: 1225 QEFDDDLTCIFNDDNADKLILRIRIM--NDEA-----------PKGELNDESAEDDVFLK 1271
            +E  +    I +D+NA  L++R+RI   +DE+            K +L        V++ 
Sbjct: 1200 KELGNGAHVICSDENAVDLVIRVRITKSDDESLNFYTTVLNTLLKLQLGGYKNVKKVYIS 1259

Query: 1272 KIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
            + +      +   G+ L  V+ +  V++R T SN LIEI E LGIEA R ++L EL +VI
Sbjct: 1260 EDKDRREWYLQTDGICLPQVLGNPAVNSRLTVSNDLIEIAETLGIEAARESILRELAIVI 1319

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
              +GSYVNYRH+++L D MT RG+L  ITRHG+N+   G + R SFEETV+ILLDAA+ +
Sbjct: 1320 DGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKAGAGALKRSSFEETVEILLDAALVS 1379

Query: 1392 ESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPV 1451
            E +  RG+TENIM+GQLAP+GTG+  + L+ + L  AI L  P       F      +P+
Sbjct: 1380 EKNLCRGITENIMMGQLAPMGTGNVEIMLDVKKLDKAIPLSNPV------FKPNDPVTPM 1433

Query: 1452 SGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSP 1510
              TP  D +               +    +SP    MA+    S   SP+SP YSP+SP
Sbjct: 1434 ISTPSSDSL--------------SINSGNWSPTHLEMAYPRDLSGRLSPTSPSYSPTSP 1478


>gi|120561217|gb|ABM26994.1| RNA polymerase II largest subunit, partial [Mucor hiemalis]
          Length = 1009

 Score = 1278 bits (3308), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 613/1019 (60%), Positives = 771/1019 (75%), Gaps = 24/1019 (2%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELAKP++HIGF+  V  I+  VCF+CSK+  DE + +F +A KI + K +L+ + D  
Sbjct: 1    HIELAKPVYHIGFLTKVKKILECVCFHCSKLKVDETNPRFIRAKKITDAKTKLRAVWDLA 60

Query: 142  KNKTKCEGGDEIDVPGQDGEE----PLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKND 197
            K K  CEG DE +   ++ EE      K   GGCG +QP +  +G+K+ A+++A     D
Sbjct: 61   KTKMTCEGSDEAEDGLEEKEEFDNGKRKSTHGGCGYKQPLIRKDGLKLYAQFRAN--AGD 118

Query: 198  DQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVR 257
            D        E +Q LTA +VL +LK ISD+D + +GL+ ++ARP+WMI  VLP+PPP VR
Sbjct: 119  DNGG-----EGRQQLTAAKVLQILKNISDQDIRDMGLSEEFARPEWMITTVLPVPPPQVR 173

Query: 258  PS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNE 307
            PS          DDLTH+L+ +++ N N+RR E  GAP H++ EF QLLQFHIATY DN+
Sbjct: 174  PSIQMDGTSRGEDDLTHKLSDVLKANANVRRCESEGAPVHVVQEFEQLLQFHIATYMDND 233

Query: 308  LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 367
            + GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +N+DQ+GVP
Sbjct: 234  IAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNLDQVGVP 293

Query: 368  WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 427
             SIA NLTYPE VTPYNI++L+ LV  GP   PG   AKY+IRD+G+R+DLRY K++ + 
Sbjct: 294  RSIARNLTYPEIVTPYNIDKLQALVRNGPLEHPG---AKYVIRDNGERIDLRYRKRAGEI 350

Query: 428  HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDG 487
             L+ GY+VERH+ND D V+FNRQPSLHKMS+MGHR+K+MPYSTFRLNLSVTSPYNADFDG
Sbjct: 351  PLQYGYRVERHINDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDG 410

Query: 488  DEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
            DEMN+HVPQS ETRAEV E+ MVPK IVSPQSN+PVMGIVQDTL G RK T RD F+ KD
Sbjct: 411  DEMNLHVPQSLETRAEVTEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTLRDCFMTKD 470

Query: 548  VFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILT 607
            + MNI+MW   +DG +P P ILKP+P+WTGKQ+ +++IPK IN     + H D +  +++
Sbjct: 471  LVMNIVMWVPSWDGYIPPPAILKPKPMWTGKQIVSMVIPKGINCQTFHSTHPDGESTLIS 530

Query: 608  AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 667
             GDT V IE GEL+ G +CKKT+GT+ G LIH I  E+GP+AA+ FLG TQ +VNYWLLQ
Sbjct: 531  PGDTRVIIENGELICGIVCKKTVGTAGGGLIHTIMNELGPEAAKNFLGGTQQVVNYWLLQ 590

Query: 668  NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVN 727
            N FSIGIGDTIAD  +M TI + IS+AK  V+ +I  AQ   LE +PG T+ ESFE KVN
Sbjct: 591  NGFSIGIGDTIADKVSMATITNIISQAKQRVQEVIITAQQDKLEVQPGMTLRESFEAKVN 650

Query: 728  QVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 787
            Q LN ARD+AG  AQ SL E NN+K MV +GSKGSFINISQM+ACVGQQNVEGKRIP+GF
Sbjct: 651  QTLNKARDDAGKMAQNSLKEDNNVKQMVISGSKGSFINISQMSACVGQQNVEGKRIPYGF 710

Query: 788  VDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQR 847
              RTLPHF+KDD+ PESRGFVENSYLRGLTP EFFFHAMGGREGLIDTAVKT+ETGYIQR
Sbjct: 711  KFRTLPHFSKDDHSPESRGFVENSYLRGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQR 770

Query: 848  RLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF 907
            RLVKA+ED+MVKYDGTVRNSLGD+I+F YGEDGMD++ +ESQ   SLK  + EF+K ++ 
Sbjct: 771  RLVKALEDVMVKYDGTVRNSLGDIIEFCYGEDGMDALSVESQKFFSLKCNQEEFEKRYKI 830

Query: 908  EMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPV 967
            ++  + +    +    +  ++  +  +   D E  +L  DR +L T I  +GD  WPLPV
Sbjct: 831  DVMNKGFKKGALSYNVLKSIEGSETAQAYLDHEFYQLTEDRNKLRTNIFKNGDDKWPLPV 890

Query: 968  NLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFF 1027
            NL RLI N+Q+ F +DPR+PSD+HP+++V+ V+ L +RL VV G D +S E QKNATL F
Sbjct: 891  NLTRLITNSQQIFHIDPRKPSDIHPLQIVDGVNALAQRLLVVRGSDKISNETQKNATLLF 950

Query: 1028 NILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1086
             ILLRSTF+ KRV++E  LT +AFEW++GEIESRFL S+VAPGEM+G +AAQSIGEPAT
Sbjct: 951  GILLRSTFSVKRVVEEFHLTSQAFEWILGEIESRFLTSIVAPGEMVGTIAAQSIGEPAT 1009


>gi|303388581|ref|XP_003072524.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
            intestinalis ATCC 50506]
 gi|303301665|gb|ADM11164.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
            intestinalis ATCC 50506]
          Length = 1543

 Score = 1278 bits (3306), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 678/1485 (45%), Positives = 935/1485 (62%), Gaps = 131/1485 (8%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANM 73
            +++ +QFG+ SP+EIR  SV  I H E  E G PK GGL D R+GT DR   C++C  + 
Sbjct: 9    QIKSIQFGLFSPEEIRNGSVALIVHPEVMEGGVPKTGGLIDLRMGTTDRMYLCQSCGGDN 68

Query: 74   AECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNR 133
              CPGHFGH+EL KPMFH+G++  +  ++  VCF CSKI   +           R  ++ 
Sbjct: 69   FSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKIKVSK-----------RGVRST 117

Query: 134  LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQR 193
            L  +    K+K  CEG            E L   K GCG +QP +  EG+ ++A  K + 
Sbjct: 118  LNNVWSMSKSKLVCEG------------EILDNGKSGCGNRQPVIKKEGLTLVAFMKGE- 164

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
                      E  E K  L  ERV  + K+ISDEDC  +G + KY+RP+WMIL VL +PP
Sbjct: 165  ----------ESNEGKVMLNGERVYSIFKKISDEDCVYMGFDLKYSRPEWMILTVLLVPP 214

Query: 254  PPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
            P VRPS          DDLTH+LA II+ N  L++ E+ GAP HI+ ++ QLLQFH+AT 
Sbjct: 215  PAVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATL 274

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DNEL GQP+A Q+SGRP+KS+ +RLK KEGRIRGNLMGKRVDFSARTVITPDP I++++
Sbjct: 275  IDNELGGQPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPNISLEE 334

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP  +A   T+PE VT +NI++L++LV  GP+  PG   A Y++R DGQ++DL +   
Sbjct: 335  VGVPLEVAKIHTFPERVTSFNIDKLEKLVRAGPNEHPG---ANYVLRSDGQKIDLNF--N 389

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
             SD  LE GY VERH+  GD VLFNRQPSLHKMS+M H  ++M   TFRLNLSVTSPYNA
Sbjct: 390  RSDIRLEEGYIVERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGDKTFRLNLSVTSPYNA 449

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+H+PQS+ ++AE+ EL +V K I+SPQSN+PVMGIVQDTL G R  T RDTF
Sbjct: 450  DFDGDEMNLHMPQSYTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTF 509

Query: 544  I-EKDVFMNILMWWEDFDGKVP---------------------QPTILKPRPLWTGKQVF 581
            + E++V + +     +F    P                      P I KP  LWTGKQ+ 
Sbjct: 510  LNEREVMLLLYAVNIEFSDTAPGETTYMGVNRTKDYDIMKVLKNPAIAKPMKLWTGKQIL 569

Query: 582  NLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            + ++P  +N    ++ H ++D       DT V I+ G + SG + KK  G + G LIH+I
Sbjct: 570  SFVLP-NLNYTGFSSEHNEDDNE--NINDTKVIIQNGYIHSGVIDKKAAGATQGGLIHII 626

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKN 700
            + + GP  A +F    Q ++N ++   + FSIGIGDTIADAKT++ +++ I KAK  V  
Sbjct: 627  FNDFGPKRAAQFFNGVQKMINIFMTGIHTFSIGIGDTIADAKTVKMVDEAIRKAKEEVSI 686

Query: 701  LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760
            +I+ A+   LE  PG TM ESFE+ +N VLN ARD +G+SAQ+SLS +NN+K MV AGSK
Sbjct: 687  IIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSGNNNMKTMVLAGSK 746

Query: 761  GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 820
            GSFINISQ+TACVGQQNVEGKRIPFGF  RTLPHF KDDY  +SRGFVENSYL GL P+E
Sbjct: 747  GSFINISQVTACVGQQNVEGKRIPFGFSQRTLPHFVKDDYTGKSRGFVENSYLTGLDPEE 806

Query: 821  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 880
            FFFHAMGGREGLIDTA+KT+ETGYIQRRLVKA+ED +V+ D +VR+  G V Q  YGEDG
Sbjct: 807  FFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQVKYGEDG 866

Query: 881  MDSVWIESQTLDSLKMKKSEFDKAFRFEM---DEENWNPNYMLQEYIDDLKTIKELRDVF 937
             D+ ++ESQ +D        F K +  +M    E       + +E    L +  +L+ + 
Sbjct: 867  FDATFLESQKVDV-----KNFTKRYYIDMFGNGELGIKQGQVSEEVYGILCSDVDLQKLL 921

Query: 938  DAEVQKLEADRYQ-----LATEIATSGD--------SSWPLPVNLKRLIWNAQKTFKVDP 984
            D E + L  + ++        EI    D        ++   P NL RL+ +A++ F +  
Sbjct: 922  DQEYEWLVEEIFEGPPISSIGEIDIEHDYRVKDIYQNAVMSPCNLTRLLASAKREFHLS- 980

Query: 985  RRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEH 1044
                D+ P  ++EA   L    K++                  N+L+R+  + KR+L EH
Sbjct: 981  --AGDVSPYYILEAHKNLMTSNKIL------------------NVLIRTNLSVKRILLEH 1020

Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
            +L  EAF WV+  I ++ L++ + P EM+G +AAQS+GEPATQMTLNTFH AGVS+  VT
Sbjct: 1021 KLNTEAFNWVVEMIRAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSS-TVT 1079

Query: 1105 LGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYD 1164
            +GVPRL+EI NV K +KTPS+ ++L      T E AK +Q  +E  T++ +  ++E++YD
Sbjct: 1080 MGVPRLKEIFNVTKNLKTPSMKIYLDKEHCKTIELAKTIQNEIECLTVKDLCLSSEIYYD 1139

Query: 1165 PDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKIN 1224
            P+   T I +D +FV++Y+E PD+D+    ++P+L+R+ ++R  +V + +++  VA  I+
Sbjct: 1140 PEITSTEIADDKDFVEAYFEFPDDDVDFSSLTPFLIRLVVDRAKLVGRGINLEYVATFIS 1199

Query: 1225 QEFDDDLTCIFNDDNADKLILRIRIMNDEAP-------------KGELNDESAEDDVFLK 1271
            +E  +    I +D+NA  +++RIRI   E               K +L        V++ 
Sbjct: 1200 KELGNGAHVICSDENAVDMVIRIRIAKSEDESLNFYMVVLNSLLKFQLGGYKNIKKVYIS 1259

Query: 1272 KIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
            + ++     +   G+ L  ++ +  V+++ TTSN LIEI E LGIEA R ++L EL +VI
Sbjct: 1260 EDKNRKEWYLQTDGICLPQILGNPSVNSQLTTSNDLIEIAETLGIEAARESILRELAIVI 1319

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
              +GSYVNYRH+++L D MT RG+L  ITRHG+N+   G + R SFEETV+ILLDAA+ +
Sbjct: 1320 DGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGALKRSSFEETVEILLDAALVS 1379

Query: 1392 ESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSY 1436
            E +  RG+TENIM+GQLAP+GTG+  + L+ + L  AI L  P +
Sbjct: 1380 EKNLCRGITENIMMGQLAPMGTGNVEIMLDVKKLDKAIPLSNPVF 1424


>gi|449329642|gb|AGE95912.1| DNA-directed RNA polymerase II, partial [Encephalitozoon cuniculi]
          Length = 1487

 Score = 1274 bits (3296), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 682/1491 (45%), Positives = 936/1491 (62%), Gaps = 134/1491 (8%)

Query: 10   AEVAK-VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCET 68
            A+V K ++ +QFG+ SPDE+R  SV  I H E  E G PK GGL D R+GT DR   C++
Sbjct: 4    AKVKKQIKSIQFGLFSPDEVRNGSVALIVHPEVMEGGVPKTGGLIDLRMGTTDRMYLCQS 63

Query: 69   CTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKI- 127
            C  +   CPGHFGH+EL KPMFH+G++  +  ++  VCF CSKI             KI 
Sbjct: 64   CGGDNFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKI-------------KIP 110

Query: 128  -RNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMI 186
             +  K+ L  +    K ++ CEG            E L   + GCG +QP +  EG+ ++
Sbjct: 111  RKGIKSTLSNVWGMSKGRSVCEG------------EVLDNGRSGCGNKQPVIKREGLTLV 158

Query: 187  AEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMIL 246
            A  K +           E  E K  L  ERV  + K+ISDED   +G + KY+RP+WMIL
Sbjct: 159  AFMKGE-----------ESNEGKVMLNGERVYSIFKKISDEDSVYMGFDLKYSRPEWMIL 207

Query: 247  QVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLL 296
             VL +PPP VRPS          DDLTH+LA II+ N  L++ E+ GAP HI+ ++ QLL
Sbjct: 208  TVLLVPPPAVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLL 267

Query: 297  QFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPD 356
            QFH+AT+ DN++ G P+A Q+SGRP+KS+ +RLK KEGRIRGNLMGKRVDFSARTVITPD
Sbjct: 268  QFHVATFIDNDIGGLPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPD 327

Query: 357  PTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRL 416
            P I+++++GVP  IA   T+PE VT +NI+RL++LV  GP+  PG   A Y++R DGQ++
Sbjct: 328  PNISLEEVGVPLEIAKIHTFPEKVTSFNIDRLEKLVRAGPNEHPG---ANYVLRSDGQKI 384

Query: 417  DLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLS 476
            DL +    SD  LE GY VERH+  GD VLFNRQPSLHKMS+M H  ++M   TFRLNLS
Sbjct: 385  DLNF--NRSDIRLEEGYVVERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGNKTFRLNLS 442

Query: 477  VTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRK 536
            VTSPYNADFDGDEMN+H+PQS+ ++AE+ EL +V + I+SPQSN+PVMGIVQDTL G R 
Sbjct: 443  VTSPYNADFDGDEMNLHMPQSYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRL 502

Query: 537  ITKRDTFIEKDVFMNILMW--------------------WEDFD--GKVPQPTILKPRPL 574
             T RDTF+ +   M++L                       +D+D    + +P I KP  L
Sbjct: 503  FTLRDTFLNEREVMSLLYAVNLEFCDIPLGDAVQTGLRKGKDYDIMKILRKPAIAKPMRL 562

Query: 575  WTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTST 634
            WTGKQV + ++P  +N    ++ H D+DK     GDT V I+ G + SG + KK  G + 
Sbjct: 563  WTGKQVLSFVLP-NLNYIGLSSEHDDDDKE--NIGDTRVIIQDGYIHSGVIDKKAAGATQ 619

Query: 635  GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISK 693
            G L+H+I+ + GP  A +F    Q ++N ++   + FS+GIGDTIAD KT++ +   I K
Sbjct: 620  GGLVHIIFNDFGPKRAAQFFDGVQRMINAFMTGIHTFSMGIGDTIADPKTVKVVESAIRK 679

Query: 694  AKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKA 753
            AK  V  LI+ A+   LE  PG TM ESFE+ +N VLN ARD +G+SAQ+SLSE+NN+K 
Sbjct: 680  AKEEVSALIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKT 739

Query: 754  MVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYL 813
            MV AGSKGSFINISQ+TACVGQQNVEGKRIPFGF  RTLPHF KDDY  +SRGFVENSYL
Sbjct: 740  MVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGKSRGFVENSYL 799

Query: 814  RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQ 873
             GL P+EFFFHAMGGREGLIDTA+KT+ETGYIQRRLVKA+ED +V+ D +VR+  G V Q
Sbjct: 800  TGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQ 859

Query: 874  FLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKEL 933
              YGEDG D+ ++ESQ +D     K  +   F  E  E       + +E    L +  +L
Sbjct: 860  IKYGEDGFDATFLESQKVDVKNFTKRYYIDMFGTE--ELEIKHGQVSEEVYGMLSSDVDL 917

Query: 934  RDVFDAEVQKLEADRYQ-----LATEIATSGD--------SSWPLPVNLKRLIWNAQKTF 980
            + + D E + L  + ++        E+    D        S+   P N  R++  A++TF
Sbjct: 918  QKLLDQEYEWLVGEIFEGPPILSVGEVDIERDYKVRDIYQSAVMSPCNFTRILATAKRTF 977

Query: 981  KVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRV 1040
             +      D+ P  ++EA   L    +++                  N+L+R+  + KRV
Sbjct: 978  HLS---TGDVSPYYILEAHKHLTTSNRIL------------------NVLIRTNLSVKRV 1016

Query: 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
            L EHRL  EAF WV+  I+++ L++ + P EM+G +AAQS+GEPATQMTLNTFH AGV A
Sbjct: 1017 LLEHRLNTEAFNWVVEVIDAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGV-A 1075

Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATE 1160
              VT+GVPRL+EI NV K +KTPS+ ++L      + E AK +Q  +E  T++ +   +E
Sbjct: 1076 STVTMGVPRLKEIFNVTKNLKTPSMKIYLDREHGKSIEAAKTIQNEIECLTVKDLCLFSE 1135

Query: 1161 VWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVA 1220
            ++YDP+  GT I +D +FV++Y+E PDED+    +SP+L+R+ ++R  +V + +++  VA
Sbjct: 1136 IYYDPEITGTEISDDKDFVEAYFEFPDEDVDFSCLSPFLMRLAVDRAKLVGRGINLEYVA 1195

Query: 1221 EKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFL-------KKI 1273
              I +E       I +D+NA  +++R+R    E     LN  +   +  L       K +
Sbjct: 1196 MFIRKELGGGAHVICSDENAVNMVVRVRTTKSEDES--LNFYTTALNSLLRLQLGGYKNV 1253

Query: 1274 ESNMLTE--------MALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLD 1325
            +   ++E        +   G+ L  ++ +  V++R T SN L+EI E LGIEA R ++L 
Sbjct: 1254 KKVYISEDKDRKEWYLQTDGICLSQILGNPAVNSRLTISNDLVEIAETLGIEAARESILR 1313

Query: 1326 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1385
            EL +VI  +GSYVNYRH+++L D MT RG+L  ITRHG+N+   G + R SFEETV+ILL
Sbjct: 1314 ELTIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGALKRSSFEETVEILL 1373

Query: 1386 DAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSY 1436
            DAA+ +E +  RG+TENIM+GQLAP+GTG+  + L+ + L  AI L  P +
Sbjct: 1374 DAALVSEKNICRGITENIMMGQLAPMGTGNIEIMLDMKKLDKAIPLSNPVF 1424


>gi|19172989|ref|NP_597540.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
 gi|51702033|sp|Q8SSC4.1|RPB1_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit 1; Short=RNA polymerase II subunit
            B1; AltName: Full=DNA-directed RNA polymerase III largest
            subunit
 gi|19168656|emb|CAD26175.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
          Length = 1599

 Score = 1273 bits (3294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 682/1491 (45%), Positives = 936/1491 (62%), Gaps = 134/1491 (8%)

Query: 10   AEVAK-VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCET 68
            A+V K ++ +QFG+ SPDE+R  SV  I H E  E G PK GGL D R+GT DR   C++
Sbjct: 4    AKVKKQIKSIQFGLFSPDEVRNGSVALIVHPEVMEGGVPKTGGLIDLRMGTTDRMYLCQS 63

Query: 69   CTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKI- 127
            C  +   CPGHFGH+EL KPMFH+G++  +  ++  VCF CSKI             KI 
Sbjct: 64   CGGDNFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKI-------------KIP 110

Query: 128  -RNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMI 186
             +  K+ L  +    K ++ CEG            E L   + GCG +QP +  EG+ ++
Sbjct: 111  RKGIKSTLSNVWGMSKGRSVCEG------------EVLDNGRSGCGNKQPVIKREGLTLV 158

Query: 187  AEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMIL 246
            A  K +           E  E K  L  ERV  + K+ISDED   +G + KY+RP+WMIL
Sbjct: 159  AFMKGE-----------ESNEGKVMLNGERVYSIFKKISDEDSVYMGFDLKYSRPEWMIL 207

Query: 247  QVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLL 296
             VL +PPP VRPS          DDLTH+LA II+ N  L++ E+ GAP HI+ ++ QLL
Sbjct: 208  TVLLVPPPAVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLL 267

Query: 297  QFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPD 356
            QFH+AT+ DN++ G P+A Q+SGRP+KS+ +RLK KEGRIRGNLMGKRVDFSARTVITPD
Sbjct: 268  QFHVATFIDNDIGGLPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPD 327

Query: 357  PTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRL 416
            P I+++++GVP  IA   T+PE VT +NI+RL++LV  GP+  PG   A Y++R DGQ++
Sbjct: 328  PNISLEEVGVPLEIAKIHTFPEKVTSFNIDRLEKLVRAGPNEHPG---ANYVLRSDGQKI 384

Query: 417  DLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLS 476
            DL +    SD  LE GY VERH+  GD VLFNRQPSLHKMS+M H  ++M   TFRLNLS
Sbjct: 385  DLNF--NRSDIRLEEGYVVERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGNKTFRLNLS 442

Query: 477  VTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRK 536
            VTSPYNADFDGDEMN+H+PQS+ ++AE+ EL +V + I+SPQSN+PVMGIVQDTL G R 
Sbjct: 443  VTSPYNADFDGDEMNLHMPQSYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRL 502

Query: 537  ITKRDTFIEKDVFMNILMW--------------------WEDFD--GKVPQPTILKPRPL 574
             T RDTF+ +   M++L                       +D+D    + +P I KP  L
Sbjct: 503  FTLRDTFLNEREVMSLLYAVNLEFCDIPLGDAVQTGLRKGKDYDIMKILRKPAIAKPMRL 562

Query: 575  WTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTST 634
            WTGKQV + ++P  +N    ++ H D+DK     GDT V I+ G + SG + KK  G + 
Sbjct: 563  WTGKQVLSFVLP-NLNYIGLSSEHDDDDKE--NIGDTRVIIQDGYIHSGVIDKKAAGATQ 619

Query: 635  GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISK 693
            G L+H+I+ + GP  A +F    Q ++N ++   + FS+GIGDTIAD KT++ +   I K
Sbjct: 620  GGLVHIIFNDFGPKRAAQFFDGVQRMINAFMTGIHTFSMGIGDTIADPKTVKVVESAIRK 679

Query: 694  AKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKA 753
            AK  V  LI+ A+   LE  PG TM ESFE+ +N VLN ARD +G+SAQ+SLSE+NN+K 
Sbjct: 680  AKEEVSALIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKT 739

Query: 754  MVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYL 813
            MV AGSKGSFINISQ+TACVGQQNVEGKRIPFGF  RTLPHF KDDY  +SRGFVENSYL
Sbjct: 740  MVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGKSRGFVENSYL 799

Query: 814  RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQ 873
             GL P+EFFFHAMGGREGLIDTA+KT+ETGYIQRRLVKA+ED +V+ D +VR+  G V Q
Sbjct: 800  TGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQ 859

Query: 874  FLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKEL 933
              YGEDG D+ ++ESQ +D     K  +   F  E  E       + +E    L +  +L
Sbjct: 860  IKYGEDGFDATFLESQKVDVKNFTKRYYIDMFGTE--ELEIKHGQVSEEVYGMLSSDVDL 917

Query: 934  RDVFDAEVQKLEADRYQ-----LATEIATSGD--------SSWPLPVNLKRLIWNAQKTF 980
            + + D E + L  + ++        E+    D        S+   P N  R++  A++TF
Sbjct: 918  QKLLDQEYEWLVGEIFEGPPILSVGEVDIERDYKVRDIYQSAVMSPCNFTRILATAKRTF 977

Query: 981  KVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRV 1040
             +      D+ P  ++EA   L    +++                  N+L+R+  + KRV
Sbjct: 978  HLS---TGDVSPYYILEAHKHLTTSNRIL------------------NVLIRTNLSVKRV 1016

Query: 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
            L EHRL  EAF WV+  I+++ L++ + P EM+G +AAQS+GEPATQMTLNTFH AGV A
Sbjct: 1017 LLEHRLNTEAFNWVVEVIDAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGV-A 1075

Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATE 1160
              VT+GVPRL+EI NV K +KTPS+ ++L      + E AK +Q  +E  T++ +   +E
Sbjct: 1076 STVTMGVPRLKEIFNVTKNLKTPSMKIYLDREHGKSIEAAKTIQNEIECLTVKDLCLFSE 1135

Query: 1161 VWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVA 1220
            ++YDP+  GT I +D +FV++Y+E PDED+    +SP+L+R+ ++R  +V + +++  VA
Sbjct: 1136 IYYDPEITGTEISDDKDFVEAYFEFPDEDVDFSCLSPFLMRLVVDRAKLVGRGINLEYVA 1195

Query: 1221 EKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFL-------KKI 1273
              I +E       I +D+NA  +++R+R    E     LN  +   +  L       K +
Sbjct: 1196 MFIRKELGGGAHVICSDENAVNMVVRVRTTKSEDE--SLNFYTTALNSLLRLQLGGYKNV 1253

Query: 1274 ESNMLTE--------MALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLD 1325
            +   ++E        +   G+ L  ++ +  V++R T SN L+EI E LGIEA R ++L 
Sbjct: 1254 KKVYISEDKDRKEWYLQTDGICLSQILGNPAVNSRLTISNDLVEIAETLGIEAARESILR 1313

Query: 1326 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1385
            EL +VI  +GSYVNYRH+++L D MT RG+L  ITRHG+N+   G + R SFEETV+ILL
Sbjct: 1314 ELTIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGALKRSSFEETVEILL 1373

Query: 1386 DAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSY 1436
            DAA+ +E +  RG+TENIM+GQLAP+GTG+  + L+ + L  AI L  P +
Sbjct: 1374 DAALVSEKNICRGITENIMMGQLAPMGTGNIEIMLDMKKLDKAIPLSNPVF 1424


>gi|337263096|gb|AEI69259.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
            romaleae]
 gi|396081019|gb|AFN82638.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
            romaleae SJ-2008]
          Length = 1515

 Score = 1271 bits (3289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/1485 (45%), Positives = 936/1485 (63%), Gaps = 131/1485 (8%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANM 73
            +++ +QFG+ SP+EIR  S   I H E  E G PK GGL D R+GT DR   C++C  + 
Sbjct: 9    QIKSIQFGLFSPEEIRNGSAALIVHPEVMEGGVPKVGGLIDLRMGTTDRMYLCQSCGGDN 68

Query: 74   AECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNR 133
              CPGHFGH+EL KP+FH+G++  +  ++  VCF CSKI   +           R  ++ 
Sbjct: 69   FSCPGHFGHIELTKPIFHVGYISKIKKVLECVCFYCSKIKVPK-----------RGVRST 117

Query: 134  LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQR 193
            L  +    K K+ CEG            E +   + GCG +QP +  EG+ ++A  K + 
Sbjct: 118  LNNVWSMSKGKSVCEG------------EVVGDGRSGCGNRQPVVKKEGLTLVAFMKGE- 164

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
                      E  E K  L  ERV  + K+ISDEDC  +G + KY+RP+WMI  VL +PP
Sbjct: 165  ----------ESNEGKVMLNGERVYSIFKKISDEDCVYMGFDLKYSRPEWMIFTVLLVPP 214

Query: 254  PPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
            P VRPS          DDLTH+LA II+ N  L++ E+ GAP HI+ ++ QLLQFH+AT 
Sbjct: 215  PSVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATL 274

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP+A Q+SGRP+KS+ +RLK KEGRIRGNLMGKRVDFSARTVITPDP I++++
Sbjct: 275  IDNDIGGQPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPNISLEE 334

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP  +A   T+PE VT +NI++L++LV  GP+  PG   A Y++R DGQ++DL + K 
Sbjct: 335  VGVPLEVAKVHTFPEKVTSFNIDKLEKLVRTGPNEHPG---ANYVLRSDGQKIDLNFNK- 390

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
             SD  LE GY VERH+  GD VLFNRQPSLHKMS+M H  ++M   TFRLNLSVTSPYNA
Sbjct: 391  -SDIRLEEGYIVERHMQTGDVVLFNRQPSLHKMSMMAHYARVMDDKTFRLNLSVTSPYNA 449

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+H+PQS+ ++AE+ EL +V K I+SPQSN+PVMGIVQDTL G R  T RDTF
Sbjct: 450  DFDGDEMNLHMPQSYTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTF 509

Query: 544  I-EKDVFM-----NI--------------LMWWEDFD--GKVPQPTILKPRPLWTGKQVF 581
            + E++V +     NI              L   +D+D    + +P I KP  LWTGKQ+ 
Sbjct: 510  LNEREVMLLLYAVNIEFCDTPPGGTSYMELRRTKDYDIMKVLKRPAIAKPMKLWTGKQIL 569

Query: 582  NLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            + ++P  +N    ++ H DND   ++  DT V I+ G + SG + KK  G + G L+H+I
Sbjct: 570  SFVLP-NMNYVGFSSEHNDNDNENIS--DTKVIIQDGYIHSGVIDKKAAGATQGGLVHII 626

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKN 700
            + + GP  A +F    Q ++N ++   + FSIGIGDTIADAKT++ + + I KAK  V  
Sbjct: 627  FNDFGPKRAAQFFNGVQRMINVFMTGIHTFSIGIGDTIADAKTVKMVKEAIRKAKEEVSV 686

Query: 701  LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760
            +I+ A+   LE  PG TM ESFE+ +N VLN ARD +G+SAQ+SLSE+NN+K MV AGSK
Sbjct: 687  IIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKTMVLAGSK 746

Query: 761  GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 820
            GSFINISQ+TACVGQQNVEGKRIPFGF  RTLPHF KDDY   SRGFVENSYL GL P+E
Sbjct: 747  GSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGRSRGFVENSYLTGLDPEE 806

Query: 821  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 880
            FFFHAMGGREGLIDTA+KT+ETGYIQRRLVKA+ED +V+ D +VR+  G + Q  YGEDG
Sbjct: 807  FFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLMYQIKYGEDG 866

Query: 881  MDSVWIESQTLDSLKMKKSEFDKAFRFEM---DEENWNPNYMLQEYIDDLKTIKELRDVF 937
             D+ ++ESQ +D        F K +  +M    E     + + +E    L +  +L+ + 
Sbjct: 867  FDATFLESQKVDV-----KNFTKRYYIDMFGSGELAIKQDQVSEEVYGMLSSDVDLQKLL 921

Query: 938  DAEVQKLEADRYQ----LAT-EIATSGD--------SSWPLPVNLKRLIWNAQKTFKVDP 984
            D E + L ++ ++    L+T EI    D        ++   P N  RL+  A++ F +  
Sbjct: 922  DQEYEWLVSEIFEGPSLLSTGEIDIDHDYQVRDIYKNAVMSPCNFTRLLVTAKRAFHLS- 980

Query: 985  RRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEH 1044
                D+ P  ++E    L    K++                  N+L+R+    KRVL EH
Sbjct: 981  --TGDVSPYYILETQKSLMTSNKIL------------------NVLIRTNLNVKRVLLEH 1020

Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
            +L  EAF WV+  I ++ LQ+ + P EM+G +AAQS+GEPATQMTLNTFH AGVS+  VT
Sbjct: 1021 KLNTEAFNWVVEMINAKILQARITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSS-TVT 1079

Query: 1105 LGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYD 1164
            +GVPRL+EI NV K +KTPS+ ++L      T E AK +Q  +E   ++ +  ++E++YD
Sbjct: 1080 MGVPRLKEIFNVTKNLKTPSMKIYLDKDHCKTIESAKVIQNEIECLCVKDLCLSSEIYYD 1139

Query: 1165 PDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKIN 1224
            P+   T I ED +FV++Y+E PD+D+    +SP+L+R+ ++R  +V +  ++  VAE I 
Sbjct: 1140 PEITSTEIAEDKDFVETYFEFPDDDVDFSCLSPFLMRLIVDRAKLVGRGANLEYVAESIR 1199

Query: 1225 QEFDDDLTCIFNDDNADKLILRIRIMNDEAP-------------KGELNDESAEDDVFLK 1271
            +E       I +D+NA  +++RIR+   E               K +L    +   V++ 
Sbjct: 1200 KELGSGAHVICSDENAVHMVIRIRVGKSEDESLNFYMTILNSLLKLQLRGYKSVKKVYIS 1259

Query: 1272 KIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
            + +      +   G  L  V+ +  V++R T SN LIEI E LGIEA R ++L EL +VI
Sbjct: 1260 EDKDKKEWYLQTDGTCLPQVLGNPAVNSRLTISNDLIEIAETLGIEAARESILRELAMVI 1319

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
              +GSYVNYRH+++L D MT RG+L  ITRHG+N+   G + R SFEETV+ILLDAA+ +
Sbjct: 1320 DGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKAGAGALKRSSFEETVEILLDAALVS 1379

Query: 1392 ESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSY 1436
            E +  RG+TENIM+GQLAP+GTG+  + L+ + L  AI L  P +
Sbjct: 1380 EKNLCRGITENIMMGQLAPMGTGNVEIMLDVKKLDKAIPLSNPVF 1424


>gi|401825605|ref|XP_003886897.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
            50504]
 gi|392998054|gb|AFM97916.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
            50504]
          Length = 1557

 Score = 1271 bits (3288), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/1486 (45%), Positives = 932/1486 (62%), Gaps = 133/1486 (8%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANM 73
            +++ +QFG+ SP+EIR  S   I H E  E G PK GGL D R+GT DR   C++C  + 
Sbjct: 9    QIKSIQFGLFSPEEIRNGSAALIVHPEVMESGVPKVGGLIDLRMGTTDRMYLCQSCGGDN 68

Query: 74   AECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNR 133
              CPGHFGH+EL KPMFH+G++  +  ++  VCF CSKI            +  R  K+ 
Sbjct: 69   FSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKI-----------KIPKRGAKST 117

Query: 134  LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQR 193
            L  +    K KT CEG            E +   + GCG +QP +  EG+ ++A  K + 
Sbjct: 118  LNSVWSMSKGKTVCEG------------EAVGDERSGCGNRQPVVKKEGLTLVAFMKGE- 164

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
                      E  E K  L  ERV  + K+ISDEDC  +G + KY+RP+WMIL VL +PP
Sbjct: 165  ----------ESNEGKVMLNGERVYSIFKKISDEDCVYMGFDLKYSRPEWMILTVLLVPP 214

Query: 254  PPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
            P VRPS          DDLTH+LA II+ N  L++ E+ GAP HI+ ++ QLLQFH+AT 
Sbjct: 215  PSVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLLQFHVATL 274

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP+A Q+SGRP+KS+ +RLK KEGRIRGNLMGKRVDFSARTVITPDP +++++
Sbjct: 275  IDNDIGGQPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPDPNLSLEE 334

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP  +A   T+PE VT +NI+RL++LV  GP+  PG   A Y++R DGQ++DL + K 
Sbjct: 335  VGVPLEVAKIHTFPEKVTSFNIDRLEKLVRTGPNEHPG---ANYVLRSDGQKIDLNFNK- 390

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
             SD  LE GY VERH+  GD VLFNRQPSLHKMS+M H  ++M   TFRLNLSVTSPYNA
Sbjct: 391  -SDIKLEEGYVVERHMQTGDVVLFNRQPSLHKMSMMAHYARVMDDKTFRLNLSVTSPYNA 449

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+H+PQS+ ++AE+ EL +V K I+SPQSN+PVMGIVQDTL G R  T RDTF
Sbjct: 450  DFDGDEMNLHMPQSYTSKAELEELALVSKQIISPQSNKPVMGIVQDTLTGLRLFTLRDTF 509

Query: 544  I-EKDVFM-----NI--------------LMWWEDFD--GKVPQPTILKPRPLWTGKQVF 581
            + E++V +     NI                  +D+D    + +P I KP  LWTGKQ+ 
Sbjct: 510  LNEREVMLLLYAVNIEFCDTPPGSTGYIGFRRTKDYDIMKVLKRPAIAKPMRLWTGKQIL 569

Query: 582  NLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            + ++P   N+  T      ND+      DT V I+ G + SG + KK  G + G L+H+I
Sbjct: 570  SFVLP---NMNYTGFSSEHNDEDSENINDTKVIIQDGYIHSGVIDKKAAGATQGGLVHII 626

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKN 700
            + + GP  A +F    Q ++N ++   + FSIGIGDTIADAKT++ + + I KAK  V  
Sbjct: 627  FNDFGPKRAAQFFNGVQRMINVFMTGIHTFSIGIGDTIADAKTVKMVEEAIRKAKEEVSV 686

Query: 701  LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760
            +I+ A+   LE  PG TM ESFE+ +N VLN ARD +G+SAQ+SLS +NN+K MV AGSK
Sbjct: 687  IIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSGNNNMKTMVLAGSK 746

Query: 761  GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 820
            GSFINISQ+TACVGQQNVEGKRIPFGF  RTLPHF KDDY   SRGFVENSYL GL P+E
Sbjct: 747  GSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGRSRGFVENSYLTGLDPEE 806

Query: 821  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 880
            FFFHAMGGREGLIDTA+KT+ETGYIQRRLVKA+ED +V+ D +VR+  G V Q  YGEDG
Sbjct: 807  FFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQVKYGEDG 866

Query: 881  MDSVWIESQTLDSLKMKKSEFDKAF--------RFEMDEENWNPNYMLQEYIDDLKTIKE 932
             D+ ++ESQ +D     K      F        + ++ EE +    ML   +D  K + +
Sbjct: 867  FDATFLESQKVDVKNFAKRYCIDMFGDGKLAITQGQVSEEVYG---MLSSDVDLQKLLDQ 923

Query: 933  LRDVFDAEV---------QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVD 983
              +    E+          +++ +R     E+  S   S   P N  RL+  A++ F + 
Sbjct: 924  EYEWLVGEIFEGPPPISPGEIDIERDYQVKEVYKSAVMS---PCNFTRLLATAKRAFHLS 980

Query: 984  PRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKE 1043
                 D+ P  ++EA   L    K++                  N+L+R+    KRVL E
Sbjct: 981  ---VGDVSPYYILEAHRNLMTSNKIL------------------NVLIRTNLNVKRVLLE 1019

Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
            H+L  EAF WV+   +++ L++ + P EM+G +AAQS+GEPATQMTLNTFH AGVS+  V
Sbjct: 1020 HKLNTEAFNWVVEMTKAKILKARITPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSS-TV 1078

Query: 1104 TLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWY 1163
            T+GVPRL+EI NV K +KTPS+ ++L      T E AK +Q  +E   ++ +  ++E++Y
Sbjct: 1079 TMGVPRLKEIFNVTKNLKTPSMKIYLDKDHCKTIESAKAIQNEIECLCVKDLCLSSEIYY 1138

Query: 1164 DPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKI 1223
            DP+  GT I+ED +FV++Y+E PD+D+    +SP+L+R+ ++R  ++ +  +M  VA  I
Sbjct: 1139 DPEITGTEIDEDKDFVETYFEFPDDDVDFSCLSPFLIRLIVDRAKLIGRGTNMEYVAASI 1198

Query: 1224 NQEFDDDLTCIFNDDNADKLILRIRIM--NDEA-----------PKGELNDESAEDDVFL 1270
             +E  +    I +D+NA  L++R+RI   +DE+            K +L        V++
Sbjct: 1199 KKELGNGAHVICSDENAVDLVIRVRITKSDDESLNFYTTVLNTLLKLQLGGYKNVKKVYI 1258

Query: 1271 KKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
             + +      +   G+ L  V+ +  V++R T SN LIEI E LGIEA R ++L EL +V
Sbjct: 1259 SEDKDRREWYLQTDGICLPQVLGNPAVNSRLTVSNDLIEIAETLGIEAARESILRELAIV 1318

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            I  +GSYVNYRH+++L D MT RG+L  ITRHG+N+   G + R SFEETV+ILLDAA+ 
Sbjct: 1319 IDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKAGAGALKRSSFEETVEILLDAALV 1378

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSY 1436
            +E +  RG+TENIM+GQLAP+GTG+  + L+ + L  AI L  P +
Sbjct: 1379 SEKNLCRGITENIMMGQLAPMGTGNVEIMLDVKKLDKAIPLSNPVF 1424


>gi|77176711|gb|ABA64470.1| DNA-dependent RNA polymerase II largest subunit [Cyanophora paradoxa]
          Length = 1000

 Score = 1268 bits (3280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 612/1014 (60%), Positives = 765/1014 (75%), Gaps = 31/1014 (3%)

Query: 92   IGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGD 151
            IGF+ T+L ++R VCFNCSKIL D++D +FK A +I+ P+ +L+ ++D CK+K+ CEGG+
Sbjct: 1    IGFLNTILKVLRCVCFNCSKILCDKNDVRFKAAQRIKRPEAKLRAVMDICKSKSMCEGGE 60

Query: 152  EIDV-----PGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPV 206
            E+D+     P    +  + K + GCG  QPK+  +G+K+ AE+K         + L E  
Sbjct: 61   ELDMNVSLDPAAADKAGVPK-RVGCGNPQPKIMKDGLKLTAEFK---------KTLDENQ 110

Query: 207  ERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS------- 259
            E+K  L  E+V  + KRISDEDC+ +GL+P++ARPDW  +  LP+PP  VRP        
Sbjct: 111  EKKIILMPEQVYNIFKRISDEDCRHMGLDPRWARPDWFCITHLPVPPAAVRPGIAMNSVQ 170

Query: 260  ---DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQ 316
               DDLT +L  I+R N  LR+ E+N APAH I+E    LQ+HIATY DNELPG P A Q
Sbjct: 171  RAEDDLTSKLMDIVRANAQLRKNEQNAAPAHHINELVTQLQYHIATYMDNELPGIPPAQQ 230

Query: 317  RSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTY 376
            RSGR +KSIC RLK KEGRIRGNLMGKRVDFSARTVIT DP + IDQ+GVP SIALNLT 
Sbjct: 231  RSGRALKSICQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLGIDQVGVPRSIALNLTT 290

Query: 377  PETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVE 436
            PE VTPYN++R+ +L+  GP   PG   A+YIIR DG R DLRY++K+SD HLE GY+VE
Sbjct: 291  PEIVTPYNMDRMYQLIRAGPTEYPG---ARYIIRSDGTRFDLRYVRKASDLHLEPGYRVE 347

Query: 437  RHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 496
            RH+ DGD+VLFNRQPSLHKMSIM HRIK+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ
Sbjct: 348  RHIQDGDYVLFNRQPSLHKMSIMAHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 407

Query: 497  SFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW 556
            SFETRAE  E++ VP+ IVSPQSNRPVMGIVQDTL+  +K+T RDTFIEKDV MNI+M  
Sbjct: 408  SFETRAEASEIIAVPRQIVSPQSNRPVMGIVQDTLMASQKMTLRDTFIEKDVIMNIVMHL 467

Query: 557  EDFDGKVPQPTILK-PR-PLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVR 614
            + FDG++P P I+K P+ P WTGKQ+F+  +P  +N+ R  + H D +   ++ GDT VR
Sbjct: 468  DSFDGRLPIPAIVKSPKGPRWTGKQLFSTFLP-NVNVVRFHSTHPDGESTDISPGDTQVR 526

Query: 615  IEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGI 674
            IE GELL G +CK+TLGTS GSLIHVI  E GPD AR F   TQ ++N WL+   FS+GI
Sbjct: 527  IENGELLCGIVCKRTLGTSAGSLIHVIMNEHGPDTARVFFNMTQKVINNWLINVGFSVGI 586

Query: 675  GDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR 734
            GDTIAD +TME+IN T+ KAK  V  ++ +AQ   +E +PGR+ +ESFE+KVN++LN AR
Sbjct: 587  GDTIADDRTMESINSTLKKAKEEVDTVVIEAQQGKMELQPGRSFIESFESKVNRILNQAR 646

Query: 735  DEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPH 794
            D AG +AQ SL  SNN+K M+T+GSKGSFINISQM ACVGQQNVEGKRIPFGF +RTLPH
Sbjct: 647  DAAGKTAQGSLQRSNNVKTMLTSGSKGSFINISQMFACVGQQNVEGKRIPFGFRNRTLPH 706

Query: 795  FTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAME 854
            FTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL+KAME
Sbjct: 707  FTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLIKAME 766

Query: 855  DIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENW 914
            D+MV+YD T RNS+G++IQFLYGEDGM   +IE Q L+SL++   E +K F+  +D+ N+
Sbjct: 767  DVMVQYDNTTRNSMGEIIQFLYGEDGMAGEFIEGQRLESLELDDKEMEKKFKMNLDDRNF 826

Query: 915  NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIW 974
               ++  +   +++    +R   D E ++L  DR QL +EI  SG+ +  LPVNLKRLIW
Sbjct: 827  GEGFLDPDVAAEIRGSAVIRHQLDKEYEQLLKDREQLRSEIVQSGEGAVHLPVNLKRLIW 886

Query: 975  NAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRST 1034
            NAQK +KVD  +PSD+ P  +++ V+ L  +L V+ GED LS EAQ+NAT  FNI LR+T
Sbjct: 887  NAQKIYKVDTSKPSDLRPDIILQGVELLSTQLVVIAGEDTLSREAQENATRLFNIHLRAT 946

Query: 1035 FASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQM 1088
             A+KRVL E+RL+  A EW++G IESRF Q++  PGEM+G +AAQSIGEPATQM
Sbjct: 947  LATKRVLSEYRLSAAALEWLLGVIESRFNQAIAHPGEMVGAIAAQSIGEPATQM 1000


>gi|4001824|gb|AAD12604.1| largest subunit of RNA polymerase II [Vairimorpha necatrix]
          Length = 1605

 Score = 1258 bits (3255), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 688/1532 (44%), Positives = 946/1532 (61%), Gaps = 144/1532 (9%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANM 73
            ++  +QFG+ SP+EIR+ SVVQI H ET E G PK GGL D ++GT +R   C +C  + 
Sbjct: 9    RISSIQFGLFSPEEIRKSSVVQIIHPETMENGFPKSGGLIDLKMGTTERAFLCSSCEKDN 68

Query: 74   AECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNR 133
              CPGHFGH+EL KPMFH+G+M  +  I+  VCF CS++            +  +N K  
Sbjct: 69   FSCPGHFGHIELTKPMFHVGYMTKIKKILECVCFYCSRL-----------KISTKNLKKD 117

Query: 134  LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQR 193
            L  + +  K K+ CEG  EI   G++G         GCG +QP +  EGM +IA  K + 
Sbjct: 118  LNFVWNISKTKSVCEG--EI---GENGFT-------GCGNKQPVIKKEGMSLIAFMKGE- 164

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
                      E  + K  L  ERV  +LK+I +ED   LG + K+ +P+W+IL VL +PP
Sbjct: 165  ----------EESDGKVILNGERVHNILKKIVNEDAVFLGFDQKFTKPEWLILTVLLVPP 214

Query: 254  PPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
            P VRPS          DDLTH+LA I++ N  L++ E  GAP H++ ++ QLLQFHIAT 
Sbjct: 215  PSVRPSIVMEGMLRAEDDLTHKLADIVKANTYLKKYELEGAPGHVVRDYEQLLQFHIATM 274

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSAR+VITPDP I++++
Sbjct: 275  IDNDISGQPQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITPDPNISVEE 334

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP  IA   T+PE +TP+NI+RL +LV  GP+  PG   A Y+IR+DGQR+DL +   
Sbjct: 335  VGVPSEIAKIHTFPEIITPFNIDRLTKLVSNGPNEYPG---ANYVIRNDGQRIDLNF--N 389

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
              D  LE GY VERH+ DGD VLFNRQPSLHKMS+M H +++M   TFRLNLS  SPYNA
Sbjct: 390  RGDIKLEEGYVVERHMQDGDVVLFNRQPSLHKMSMMAHFVRVMEGKTFRLNLSCVSPYNA 449

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+H+PQS+ ++AE+ EL +V K ++SPQSN+PVMGIVQD+L   R  T RD+F
Sbjct: 450  DFDGDEMNLHMPQSYNSKAELEELCLVSKQVLSPQSNKPVMGIVQDSLTALRLFTLRDSF 509

Query: 544  IEKDVFMNIL-----------------MWWEDFDGK-------------VPQPTILKPRP 573
             ++   M +L                 M  +D  G              +  P I  P+ 
Sbjct: 510  FDRRETMQLLYSVNINNYEFTDSSKLIMTHDDSFGNNLHTEESSNIMKILNFPAISYPKK 569

Query: 574  LWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTS 633
            LWTGKQ+ + I+P   N       +  N++ +    D+ V I  GE+LSG + KK +G++
Sbjct: 570  LWTGKQILSYILP---NTIYNGKSNEHNEEDLENVEDSYVIIRNGEILSGIIDKKAVGST 626

Query: 634  TGSLIHVIWEEVGPDAARKFLGHTQWLVN-YWLLQNAFSIGIGDTIADAKTMETINDTIS 692
             G LIH+I  + GPD    F    Q ++N Y+   NAFSIGIGD IAD +TM  +  +I 
Sbjct: 627  QGGLIHIIANDFGPDRVTCFFDDAQKMMNLYFATINAFSIGIGDAIADKETMSQVQRSIE 686

Query: 693  KAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLK 752
             AK  V  +I +AQ   LE  PG +M ESFE++VN +LN  RD +G+SA KSLS  NN++
Sbjct: 687  TAKEQVNEIIVKAQKNKLERLPGMSMRESFESQVNYILNKPRDISGASASKSLSFCNNMR 746

Query: 753  AMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSY 812
             MV AGSKGSFINISQ+TAC+GQQNVEGKRIPFGF  R+LPHF+K DY  +SRGFVENSY
Sbjct: 747  TMVLAGSKGSFINISQVTACLGQQNVEGKRIPFGFNYRSLPHFSKADYSGKSRGFVENSY 806

Query: 813  LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 872
            ++G+TP+EFFFHAMGGREGLID A+KT+ETGYIQRRLVKAMED  V  D +VR + G + 
Sbjct: 807  VKGITPEEFFFHAMGGREGLIDIAIKTAETGYIQRRLVKAMEDATVTLDRSVRGADGFIY 866

Query: 873  QFLYGEDGMDSVWIESQ--------TLDSLKMKKSEFDKAF---RFEMDEENWNPNYMLQ 921
            Q+ YGEDG D+ ++E Q        T D +  K       F    F + +EN      + 
Sbjct: 867  QYEYGEDGFDATFLEMQKMTHDDVATKDDVSFKNLHLVDMFTDLNFAIKKEN------VT 920

Query: 922  EYIDDLKTIKELRDVFDAEVQKLEADRYQLATE-IATSGDSSWPLPVNLKRLIWNAQKTF 980
            + I  L T        D  +QK+  D ++   E +      +   P N +R+I  A   +
Sbjct: 921  DQIYKLLTT-------DVNLQKILYDEFEWLNENVKKYEKMNIASPCNFQRIINLA--IY 971

Query: 981  KVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRV 1040
            K D R+  D+ P  +++ +  L E L +                L   IL++   + KR+
Sbjct: 972  KFDCRK-GDISPYLILDTLKNLIENLPI--------------KNLLIEILIKYNLSIKRI 1016

Query: 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
            L E++L+ EA+ W++ EI+ + L+S+++P EM+G +AAQS+GEPATQMTLNTFH AGVSA
Sbjct: 1017 LNEYKLSLEAYNWILKEIKFKILKSIISPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSA 1076

Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATE 1160
             N+T+GVPRL+EIINVAK IKTP + ++LK   N T E AK +Q  LE++ ++S+ E +E
Sbjct: 1077 -NITMGVPRLKEIINVAKNIKTPCMKIYLKDPFNKTLEMAKKIQSELEFSDIKSLCEFSE 1135

Query: 1161 VWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVA 1220
            ++YDP    T I+ED +FV+ Y++ PDE +   K+  +++R++++R  +V K L +  + 
Sbjct: 1136 IYYDPVIEDTSIKEDKDFVQEYFDFPDEHLDFSKMPKFIIRLKIDRIKLVSKNLKLENIV 1195

Query: 1221 EKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLK-----KIES 1275
            + +++ F +    I +D+N+  LI+RIR ++      E  +   ++ + LK     KI+ 
Sbjct: 1196 KSLHEAFPNIFHIIRSDENSQNLIIRIRCISSLNNNVEYYNLQYKNILNLKIMGYNKIKK 1255

Query: 1276 NMLTE--------MALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
              ++E        +   GV +  +  H +V+    TSN L EI+EVLGIEA R  +L+EL
Sbjct: 1256 VFISEDKDKDEWYLQTDGVCIREIFSHPNVEGHLVTSNDLNEIVEVLGIEAARETILNEL 1315

Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
             +VI  +GSYVN+RH+++L D MT +G+L  ITRHG+N+   G   R SFEETVDILLDA
Sbjct: 1316 TLVIDGNGSYVNHRHISLLADVMTMKGYLTGITRHGVNKVGFGCTKRASFEETVDILLDA 1375

Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTP- 1446
            A+ AE    +G TENIM+G LAP+GTG  +L L+   L  AI L  P Y    E   TP 
Sbjct: 1376 ALVAEKYVTKGYTENIMMGHLAPLGTGIGNLLLDVSKLDKAIPLSKPEY--NYEEVDTPF 1433

Query: 1447 ARSPVS-GTPYHDGMMSPGYLFSPNLRLSPVT 1477
              SPVS       G  SP YL   N R +P T
Sbjct: 1434 IHSPVSENLSISSGNWSPAYLVEGN-RYAPKT 1464


>gi|387596460|gb|EIJ94081.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida parisii
            ERTm1]
          Length = 1612

 Score = 1257 bits (3253), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 718/1657 (43%), Positives = 1009/1657 (60%), Gaps = 162/1657 (9%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCE 67
            S   + +V  ++FGILSP++I  MSV +IEH ET E G PK GGL D RLGT +R   C 
Sbjct: 3    SDISIRRVESIEFGILSPEDIIAMSVCKIEHPETMESGVPKEGGLVDLRLGTSERGFLCS 62

Query: 68   TCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKI 127
            TC      C GHFG++ELAKP+FHIG++  +  ++ SVCF CSK+  ++      +    
Sbjct: 63   TCGHRSDSCVGHFGYIELAKPVFHIGYIGKIKKVLESVCFFCSKLRVEKSILHSPKPRTQ 122

Query: 128  RNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIA 187
            +  K RL  I +  KN+  C G  E+ V  +D   P +K + GC  +QP +  EG+ ++A
Sbjct: 123  KERKRRLNYIWNLAKNRAVCMG--EL-VESEDN--PEEKQRTGCENRQPTIRKEGLHLLA 177

Query: 188  EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQ 247
              K +           E  E K  L+AE+VL +L+RI ++D + LG + + ARP+WMI++
Sbjct: 178  FQKGE-----------ESSEGKTMLSAEKVLEILRRIPEDDIEALGFDLEKARPEWMIIR 226

Query: 248  VLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
            VLP+PPP VRPS          DDLTH+LA II+ + NL+R E+ G   HII ++ QLLQ
Sbjct: 227  VLPVPPPQVRPSIVMEGSLRCEDDLTHKLADIIKASNNLKRYEQEGVAGHIIRDYEQLLQ 286

Query: 298  FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
            FHIAT  +N++ GQP++ Q++GRP+K+I +RL+ KEGR+RGNLMGKRVDFSARTVIT DP
Sbjct: 287  FHIATLMNNDISGQPQSLQKNGRPLKAIRARLRGKEGRVRGNLMGKRVDFSARTVITADP 346

Query: 358  TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
             I+++++GVP  IA  LT+PE VT YNI++L +LV  GP+  PG   A Y+IRDDGQ++D
Sbjct: 347  NISMNEVGVPEEIARMLTFPERVTEYNIDKLTQLVHRGPYNHPG---ANYVIRDDGQKID 403

Query: 418  LRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 477
            LR+ K   + HL+ GY VERHL++GD VLFNRQPSLHKMS+M HR ++M YSTFRLNLSV
Sbjct: 404  LRFHK--GEVHLQCGYVVERHLSNGDTVLFNRQPSLHKMSMMAHRARVMKYSTFRLNLSV 461

Query: 478  TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
            T+PYNADFDGDEMN+H+PQS   +AE+ EL +V K IVSPQSN+PVMGIVQDTL+G  K+
Sbjct: 462  TAPYNADFDGDEMNLHLPQSIPAQAELKELALVEKNIVSPQSNKPVMGIVQDTLMGVYKL 521

Query: 538  TKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK-QINLFRTAA 596
            T+RD F+ +   M+ L +  D   K  +PTIL+P  L+TGKQ+F+  +P        +  
Sbjct: 522  TRRDLFLTRSQVMH-LHYAIDNGSKPIKPTILRPAVLYTGKQIFSATLPDVTYKGLHSEH 580

Query: 597  WHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGH 656
             H  N +      D+ V I+ GELL+G +CKKT+GT++G LIHVI  +        F+  
Sbjct: 581  VHGKNYRA--NPMDSEVVIKNGELLAGIICKKTVGTASGGLIHVIANDFPRSVCVDFIDA 638

Query: 657  TQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPG 715
             Q  ++ WL+    FS+GIGDTIAD  +M+ I + I +AK +VK++I QA+  +LE  PG
Sbjct: 639  LQRAISTWLMAYETFSVGIGDTIADPSSMDMIKEAIEQAKGDVKDIIVQAESNNLERLPG 698

Query: 716  RTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQ 775
             TM ESFE  V   LN ARD +G+S QK+L   NN+K MV +GSKGS+INISQM+ACVGQ
Sbjct: 699  LTMRESFEAAVTLALNKARDTSGTSTQKNLRSQNNIKQMVVSGSKGSYINISQMSACVGQ 758

Query: 776  QNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 835
            Q+VEGKRI  GF DR+LPHFTKDD+  ESRGF+ +SY+ GL+P EFFFHAMGGREGLIDT
Sbjct: 759  QSVEGKRILNGFRDRSLPHFTKDDFTAESRGFISSSYVAGLSPVEFFFHAMGGREGLIDT 818

Query: 836  AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLK 895
            AVKT+ETGYIQRRL+KA+ED  V++D +VR+  G VIQ  YG D  D+ ++E Q+L +L 
Sbjct: 819  AVKTAETGYIQRRLIKALEDAQVRHDKSVRDGEGHVIQCAYGGDCFDATYVEMQSL-ALF 877

Query: 896  MKKSEFDKAFRFE---MDEENWNPNYMLQEYIDDLKTI--KELRDVFDAEVQKLEADR-- 948
                +F + +  +   + + + +P+ +    +   K +   E++ +   E +KL++    
Sbjct: 878  CSLEKFSEMYIIDYSILSDYHLSPSILSSLRLPKTKALLAAEVK-MLQEEAKKLQSKHSK 936

Query: 949  ------------YQLATEIATS----------------------------GDSSWPLPVN 968
                        +++A E+ ++                            G S++P  ++
Sbjct: 937  GKKPLPVPFERIFRVAGEMRSAISSSFPGVAIKMGEAGSQMGKHSRLPQYGSSTYPNGMD 996

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            ++ + W+ +           D+ P  +++  + L++ L+          E  + A   F 
Sbjct: 997  MENIRWSGE-----------DLLPETIIKTREALEKELQAAISHVD---EISEIAFSLFR 1042

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQM 1088
              LR  F  KR+L E++L+  AF W + +I + FL+++V+ GEM+G +AAQSIGEPATQM
Sbjct: 1043 AHLRGYFTVKRILCEYKLSSYAFNWAVDQIRTSFLKAIVSAGEMVGTLAAQSIGEPATQM 1102

Query: 1089 TLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALE 1148
            TLNTFH AGV A  VT GVPRL+EIIN A+ IKTPSL+++LK  +  T E AK  Q  +E
Sbjct: 1103 TLNTFHLAGV-ASTVTRGVPRLKEIINAAQTIKTPSLTIYLKEEIRHTLEGAKRAQQEIE 1161

Query: 1149 YTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREM 1208
               L+ +   +E+ YDP       +ED  F+ +Y  +      P+  SPW+LR+EL+R  
Sbjct: 1162 RCYLKDILLKSEIIYDPTMRAVKADED--FIFAYGILDPTVYTPD--SPWMLRLELSRSA 1217

Query: 1209 MVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESA---- 1264
            MVD+ + +  VA+ ++        C+ +D N+ + I+R  + N+E    ++    +    
Sbjct: 1218 MVDRGIRIEQVAKTLSH--STTYRCMHSDHNSSEQIIRCELPNNEEALRKIETGVSCIMV 1275

Query: 1265 -----EDDVFLKKIESNMLTEMALR--GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                    VF+ +I +    E  L+  G  LL V+ H  +D  RT SN  +E+  V G+E
Sbjct: 1276 KGMPKIKRVFISEIGTEDKKEFVLQTEGTGLLDVLSHPLIDPTRTVSNDPLEMCRVFGVE 1335

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            A R ++L+E+R+VI  DGSYVN+RHLAIL D MT RG +  ITRHG NR ++G +MRCSF
Sbjct: 1336 AARTSILNEIRLVIESDGSYVNFRHLAILADIMTQRGIICGITRHGTNRGESGALMRCSF 1395

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM 1437
            EETV+ILL+AA  AE D  +GV E++MLG++A IGTG   + ++    K +IEL + + M
Sbjct: 1396 EETVEILLEAAATAEIDRCKGVVESVMLGKIASIGTGITDVLID----KKSIELGVMA-M 1450

Query: 1438 EGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPG 1497
            E   F      S   GTP          L SP+  +        SP       S  S  G
Sbjct: 1451 EKYSFEDEEDISD-EGTPVD--------LLSPSSTIHSDHTVMSSP-------SDRSIHG 1494

Query: 1498 YSPSSP--GYSPSSPG--YSPTSPGYSPTSPG--YSPTSPGYSPTSPTYSPSSPGYSP-- 1549
            +SP +   GY+ SSP   Y  +S GY+P+SP   +SP   G S  S  Y P +P   P  
Sbjct: 1495 WSPQNTEIGYTASSPNISYGYSSGGYAPSSPNIVHSPYMQGVSSPSHEYVPMTPRRMPGV 1554

Query: 1550 -------TSPAYSPTSPS----YSPTSPSYSPTSPSY 1575
                    S AYS +SPS    YSP      P +P+Y
Sbjct: 1555 HNNMGGMNSGAYSISSPSSQKLYSPV-----PFTPAY 1586



 Score = 40.4 bits (93), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 56/122 (45%), Gaps = 24/122 (19%)

Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPS--Y 1596
            SPSS  +S  +   SP+  S    SP    T   Y+ +SP  SY  +S  Y+P+SP+  +
Sbjct: 1472 SPSSTIHSDHTVMSSPSDRSIHGWSPQ--NTEIGYTASSPNISYGYSSGGYAPSSPNIVH 1529

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSP---------TSPAYSPTSPS----YSPTSPSYSPTSP 1643
            SP     S  S  Y P +P   P          S AYS +SPS    YSP      P +P
Sbjct: 1530 SPYMQGVSSPSHEYVPMTPRRMPGVHNNMGGMNSGAYSISSPSSQKLYSPV-----PFTP 1584

Query: 1644 SY 1645
            +Y
Sbjct: 1585 AY 1586


>gi|378756428|gb|EHY66452.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida sp. 1 ERTm2]
          Length = 1609

 Score = 1255 bits (3247), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 724/1650 (43%), Positives = 1007/1650 (61%), Gaps = 156/1650 (9%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCE 67
            S   + +V  ++FGILSP++I  MSV +IEH ET E G PK GGL D RLGT +R   C 
Sbjct: 3    SDISIRRVESIEFGILSPEDIIAMSVCKIEHPETMESGVPKEGGLVDLRLGTSERGFLCS 62

Query: 68   TCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKI 127
            TC      C GHFG++ELAKP+FHIG++  +  ++ SVCF CSK+  ++      +    
Sbjct: 63   TCGHRSDSCVGHFGYIELAKPVFHIGYIGKIKKVLESVCFFCSKLRVEKSSLPSPKPRTQ 122

Query: 128  RNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIA 187
            +  K RL  I +  KN+  C G  E+     + EE L+    GC  +QP +  EG+ ++A
Sbjct: 123  KERKRRLNYIWNLAKNRAICMG--EVVSNEDNPEETLRT---GCENRQPTIRKEGLHLLA 177

Query: 188  EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQ 247
              K +           E  E K  L+AE+VL +L+RI +ED + LG + + ARP+WM+++
Sbjct: 178  FQKGE-----------ESSEGKTMLSAEKVLEILRRIPEEDIEALGFDLEKARPEWMVIR 226

Query: 248  VLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
            +LP+PPP VRPS          DDLTH+LA II+ + NL+R E+ G   HII ++ QLLQ
Sbjct: 227  ILPVPPPQVRPSIVMEGSLRCEDDLTHKLADIIKASNNLKRYEQEGVAGHIIRDYEQLLQ 286

Query: 298  FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
            FHIAT  +N++ GQP++ Q++GRP+K+I +RL+ KEGR+RGNLMGKRVDFSARTVIT DP
Sbjct: 287  FHIATLMNNDISGQPQSLQKNGRPLKAIRARLRGKEGRVRGNLMGKRVDFSARTVITADP 346

Query: 358  TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
             I+++++GVP  IA  LT+PE VT YNI +L +LV+ GP+  PG   A Y++RDDGQ++D
Sbjct: 347  NISMNEVGVPEEIAKMLTFPERVTEYNISKLSQLVQRGPYNHPG---ANYVVRDDGQKID 403

Query: 418  LRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 477
            LR+ K   + +L++GY VERHL++GD VLFNRQPSLHKMS+M H+ ++M YSTFRLNLSV
Sbjct: 404  LRFHK--GEVNLQIGYVVERHLSNGDTVLFNRQPSLHKMSMMAHKARVMKYSTFRLNLSV 461

Query: 478  TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
            T+PYNADFDGDEMN+H+PQS   + E+ EL +V K IVSPQSN+PVMGIVQDTL+G  K+
Sbjct: 462  TAPYNADFDGDEMNLHLPQSIPAQTELKELALVEKNIVSPQSNKPVMGIVQDTLMGVYKL 521

Query: 538  TKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK-QINLFRTAA 596
            T+RD F+ K   M+ L +  D  GK  +PTIL+P  L+TGKQ+F+  +P        +  
Sbjct: 522  TRRDLFLTKSQVMH-LHYAIDNGGKYLKPTILRPAVLYTGKQIFSATLPDVTYTGLHSEH 580

Query: 597  WHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGH 656
             H  N K      DT V I+ GELL+G +CKKT+GT++G LIHVI  +        F+  
Sbjct: 581  VHGKNYKA--NPMDTEVVIKNGELLAGIICKKTVGTASGGLIHVIANDFPRSVCVDFIDA 638

Query: 657  TQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPG 715
             Q  ++ WL+    FS+GIGDTIAD  +M+ I + I +AK++VK++I QA++ +LE  PG
Sbjct: 639  LQRAISSWLMSYETFSVGIGDTIADPSSMDMIKEAIEQAKSDVKDIIVQAENNNLERLPG 698

Query: 716  RTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQ 775
             +M ESFE  V   LN ARD +G+S QK+L   NN+K MV +GSKGS+INISQM+ACVGQ
Sbjct: 699  LSMRESFEAAVTLALNKARDTSGTSTQKNLRSQNNIKQMVVSGSKGSYINISQMSACVGQ 758

Query: 776  QNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 835
            Q+VEGKRI  GF DR+LPHFTKDD+  ESRGF+ +SY+ GL+P EFFFHAMGGREGLIDT
Sbjct: 759  QSVEGKRILNGFRDRSLPHFTKDDFTAESRGFISSSYVAGLSPVEFFFHAMGGREGLIDT 818

Query: 836  AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLK 895
            AVKT+ETGYIQRRL+KA+ED  V++D +VR+  G VIQ  YG D  D+ ++E Q+L SL 
Sbjct: 819  AVKTAETGYIQRRLIKALEDAQVRHDKSVRDGEGHVIQCAYGGDCFDATYVEMQSL-SLF 877

Query: 896  MKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEI 955
                +F + +  +    +   +Y L   I +   + + + +  AE + L+ +   L  + 
Sbjct: 878  CSPEKFAEQYIIDY---SVLSDYQLAPSILNSLRLPKTKALLAAETKMLQEEAKALQAKY 934

Query: 956  ATSGDSSWPLPVNLKRLIWNAQKT------------------------------------ 979
             T G    PLPV L+R+   A K                                     
Sbjct: 935  -TKGKK--PLPVPLERIFSRAAKMRSSITSAFPGVVMKVGEGGSQMGQQGRISQYGAGSY 991

Query: 980  ---FKVDPRRPS--DMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRST 1034
                 ++  R S  D+ P ++++A + L++ L+          E  + A   F   LR  
Sbjct: 992  AGEVDIENIRWSSEDLMPEKIIKAREALEKELQNAISHVG---EIAEVAFSLFKAHLRGF 1048

Query: 1035 FASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFH 1094
            F  KRVL E+RL+  AF WV+ +I + FL+++V+ GEM+G +AAQSIGEPATQMTLNTFH
Sbjct: 1049 FTVKRVLCEYRLSLYAFNWVVEQIRTSFLKAVVSAGEMVGTLAAQSIGEPATQMTLNTFH 1108

Query: 1095 YAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRS 1154
             AGV A  VT GVPRL+EIIN A+ IKTPSL+++LK  + +T E AK  Q  +E   L+ 
Sbjct: 1109 LAGV-ASTVTRGVPRLKEIINAAQTIKTPSLTIYLKEEIRNTLEGAKKAQQEIERCYLKD 1167

Query: 1155 VTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKL 1214
            +   +E+ YDP      ++ D +F+ +Y  +     +P+  SPW+LR+ LNR  MVD+ +
Sbjct: 1168 ILLRSEIIYDPTMKA--VKSDEDFIFAYGILDSTIYSPD--SPWMLRLVLNRSAMVDRGI 1223

Query: 1215 SMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLK--- 1271
             +  V + I Q       C+ +D N+ + I+R  + N E    ++  E++   + +K   
Sbjct: 1224 RIEQVTKTIAQ--STTYRCMHSDHNSAEQIIRCELPNSEDLLRKI--ETSISCIMVKGMP 1279

Query: 1272 KIESNMLTEMAL----------RGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
            KI+   ++E+             G  L+ V+ H  +D  RT SN  +E+ +V GIEA R 
Sbjct: 1280 KIKRVFISEIGAEDKKEYVLQTEGTGLMDVLGHPLIDPTRTVSNDPLEMSQVFGIEAART 1339

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            ++L+E+R+VI  DGSYVN+RHLAIL D MT RGH+  ITRHG NR ++G +MRCSFEETV
Sbjct: 1340 SILNEIRMVIESDGSYVNFRHLAILADIMTQRGHICGITRHGTNRGESGALMRCSFEETV 1399

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLE 1441
            +ILL+AA  AE D  +GV E++MLG +A IGTG   L ++    K +IE+ + + ME  E
Sbjct: 1400 EILLEAAANAEIDRCKGVVESVMLGNVAAIGTGITDLLID----KKSIEMGVMA-MEKYE 1454

Query: 1442 FGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSS-PGYSP 1500
            F          GTP    ++SP      +L L              M+ SP  S  G+SP
Sbjct: 1455 F--EDEECTDEGTPVD--LLSPSSTIHSDLTL--------------MSSSPDRSIHGWSP 1496

Query: 1501 SSPGYSP-----------SSPGYSPTSPG--YSPTSPGYSPTSPGYSPTSPTYSP---SS 1544
             +                S   Y P+SP   YSP     S  S  Y PT+P   P   +S
Sbjct: 1497 QNTEIGYSPSSPSLSYGYSGGAYMPSSPKTVYSPYLQNVSSPSHQYVPTTPKRMPGMHNS 1556

Query: 1545 PGYSPTSPAYSPTSPS----YSPTS--PSY 1568
            PG +    AY+ +SPS    Y+P+S  PSY
Sbjct: 1557 PGNAGIG-AYNISSPSSQRLYAPSSSIPSY 1585


>gi|387594692|gb|EIJ89716.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida parisii
            ERTm3]
          Length = 1612

 Score = 1254 bits (3244), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 717/1657 (43%), Positives = 1008/1657 (60%), Gaps = 162/1657 (9%)

Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCE 67
            S   + +V  ++FGILSP++I  MSV +IEH ET E G PK GGL D RLGT +R   C 
Sbjct: 3    SDISIRRVESIEFGILSPEDIIAMSVCKIEHPETMESGVPKEGGLVDLRLGTSERGFLCS 62

Query: 68   TCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKI 127
            TC      C GHFG++ELAKP+FHIG++  +  ++ SVCF CSK+  ++      +    
Sbjct: 63   TCGHRSDSCVGHFGYIELAKPVFHIGYIGKIKKVLESVCFFCSKLRVEKSILHSPKPRTQ 122

Query: 128  RNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIA 187
            +  K RL  I +  KN+  C G  E+ V  +D   P +K + GC  +QP +  EG+ ++A
Sbjct: 123  KERKRRLNYIWNLAKNRAVCMG--EL-VESEDN--PEEKQRTGCENRQPTIRKEGLHLLA 177

Query: 188  EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQ 247
              K +           E  E K  L+AE+VL +L+RI ++D + LG + + ARP+WMI++
Sbjct: 178  FQKGE-----------ESSEGKTMLSAEKVLEILRRIPEDDIEALGFDLEKARPEWMIIR 226

Query: 248  VLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
            VLP+PPP VRPS          DDLTH+LA II+ + NL+R E+ G   HII ++ QLLQ
Sbjct: 227  VLPVPPPQVRPSIVMEGSLRCEDDLTHKLADIIKASNNLKRYEQEGVAGHIIRDYEQLLQ 286

Query: 298  FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
            FHIAT  +N++ GQP++ Q++GRP+K+I +RL+ KEGR+RGNLMGKRVDFSARTVIT DP
Sbjct: 287  FHIATLMNNDISGQPQSLQKNGRPLKAIRARLRGKEGRVRGNLMGKRVDFSARTVITADP 346

Query: 358  TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
             I+++++GVP  IA  LT+PE VT YNI++L +LV  GP+  PG   A Y+IRDDGQ++D
Sbjct: 347  NISMNEVGVPEEIARMLTFPERVTEYNIDKLTQLVHRGPYNHPG---ANYVIRDDGQKID 403

Query: 418  LRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 477
            LR+ K   + HL+ GY VERHL++GD VLFNRQPSLHKMS+M HR ++M YSTFRLNLSV
Sbjct: 404  LRFHK--GEVHLQCGYVVERHLSNGDTVLFNRQPSLHKMSMMAHRARVMKYSTFRLNLSV 461

Query: 478  TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
            T+PYNADFDGDEMN+H+PQS   +AE+ EL +V K IVSPQSN+PVMGIVQDTL+G  K+
Sbjct: 462  TAPYNADFDGDEMNLHLPQSIPAQAELKELALVEKNIVSPQSNKPVMGIVQDTLMGVYKL 521

Query: 538  TKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK-QINLFRTAA 596
            T+RD F+ +   M+ L +  D   K  +PTIL+P  L+TGKQ+F+  +P        +  
Sbjct: 522  TRRDLFLTRSQVMH-LHYAIDNGSKPIKPTILRPAVLYTGKQIFSATLPDVTYKGLHSEH 580

Query: 597  WHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGH 656
             H  N +      D+ V I+ GELL+G +CKKT+GT++G LIHVI  +        F+  
Sbjct: 581  VHGKNYRA--NPMDSEVVIKNGELLAGIICKKTVGTASGGLIHVIANDFPRSVCVDFIDA 638

Query: 657  TQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPG 715
             Q  ++ WL+    FS+GIGDTIAD  +M+ I + I +AK +VK++I QA+  +LE  PG
Sbjct: 639  LQRAISTWLMAYETFSVGIGDTIADPSSMDMIKEAIEQAKGDVKDIIVQAESNNLERLPG 698

Query: 716  RTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQ 775
             TM ESFE  V   LN ARD +G+S QK+L   NN+K MV +GSKGS+INISQM+ACVGQ
Sbjct: 699  LTMRESFEAAVTLALNKARDTSGTSTQKNLRSQNNIKQMVVSGSKGSYINISQMSACVGQ 758

Query: 776  QNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 835
            Q+VEGKRI  GF DR+LPHFTKDD+  ESRGF+ +SY+ GL+P EFFFHAMGGREGLIDT
Sbjct: 759  QSVEGKRILNGFRDRSLPHFTKDDFTAESRGFISSSYVAGLSPVEFFFHAMGGREGLIDT 818

Query: 836  AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLK 895
            AVKT+ETGYIQRRL+KA+ED  V++D +VR+  G VIQ  YG D  D+ ++E Q+L +L 
Sbjct: 819  AVKTAETGYIQRRLIKALEDAQVRHDKSVRDGEGHVIQCAYGGDCFDATYVEMQSL-ALF 877

Query: 896  MKKSEFDKAFRFE---MDEENWNPNYMLQEYIDDLKTI--KELRDVFDAEVQKLEADR-- 948
                +F + +  +   + + + +P+ +    +   K +   E++ +   E +KL++    
Sbjct: 878  CSLEKFSEMYIIDYSILSDYHLSPSILSSLRLPKTKALLAAEVK-MLQEEAKKLQSKHSK 936

Query: 949  ------------YQLATEIATS----------------------------GDSSWPLPVN 968
                        +++A E+ ++                            G S++P  ++
Sbjct: 937  GKKPLPVPFERIFRVAGEMRSAISSSFPGVAIKMGEAGSQMGKHSRLPQYGSSTYPNGMD 996

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            ++ + W+ +           D+ P  +++  + L++ L+          E  + A   F 
Sbjct: 997  MENIRWSGE-----------DLLPETIIKTREALEKELQAAISHVD---EISEIAFSLFR 1042

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQM 1088
              LR  F  KR+L E++L+  AF W + +I + FL+++V+ GEM+G +AAQSIGEPATQM
Sbjct: 1043 AHLRGYFTVKRILCEYKLSSYAFNWAVDQIRTSFLKAIVSAGEMVGTLAAQSIGEPATQM 1102

Query: 1089 TLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALE 1148
            TLNTFH AGV A  VT GVPRL+EIIN A+ IKTPSL+++LK  +  T E AK  Q  +E
Sbjct: 1103 TLNTFHLAGV-ASTVTRGVPRLKEIINAAQTIKTPSLTIYLKEEIRHTLEGAKRAQQEIE 1161

Query: 1149 YTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREM 1208
               L+ +   +E+ YDP       +ED  F+ +Y  +      P+  SPW+LR+EL+R  
Sbjct: 1162 RCYLKDILLKSEIIYDPTMRAVKADED--FIFAYGILDPTVYTPD--SPWMLRLELSRSA 1217

Query: 1209 MVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESA---- 1264
            MVD+ + +  VA+ ++        C+ +D N+ + I+R  + N+E    ++    +    
Sbjct: 1218 MVDRGIRIEQVAKTLSH--STTYRCMHSDHNSSEQIIRCELPNNEEALRKIETGVSCIMV 1275

Query: 1265 -----EDDVFLKKIESNMLTEMALR--GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                    VF+ +I +    E  L+  G  LL V+ H  +D  RT SN  +E+  V G+E
Sbjct: 1276 KGMPKIKRVFISEIGTEDKKEFVLQTEGTGLLDVLSHPLIDPTRTVSNDPLEMCRVFGVE 1335

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            A R ++L+E+R+VI  DGSYVN+RHLAIL D MT RG +  ITRHG NR ++G +MRCSF
Sbjct: 1336 AARTSILNEIRLVIESDGSYVNFRHLAILADIMTQRGIICGITRHGTNRGESGALMRCSF 1395

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYM 1437
            EETV+ILL+AA  AE D  +GV E++MLG++A IGTG   + ++    K +IEL + + M
Sbjct: 1396 EETVEILLEAAATAEIDRCKGVVESVMLGKIASIGTGITDVLID----KKSIELGVMA-M 1450

Query: 1438 EGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPG 1497
            E   F      S   GTP          L SP+  +        SP       S  S  G
Sbjct: 1451 EKYSFEDEEDISD-EGTPVD--------LLSPSSTIHSDHTVMSSP-------SDRSIHG 1494

Query: 1498 YSPSSP--GYSPSSPG--YSPTSPGYSPTSPG--YSPTSPGYSPTSPTYSPSSPGYSP-- 1549
            +SP +   GY+ SSP   Y  +S  Y+P+SP   +SP   G S  S  Y P +P   P  
Sbjct: 1495 WSPQNTEIGYTASSPNISYGYSSGEYAPSSPNIVHSPYMQGVSSPSHEYVPMTPRRMPGV 1554

Query: 1550 -------TSPAYSPTSPS----YSPTSPSYSPTSPSY 1575
                    S AYS +SPS    YSP      P +P+Y
Sbjct: 1555 HNNMGGMNSGAYSISSPSSQKLYSPV-----PFTPAY 1586



 Score = 40.4 bits (93), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 56/122 (45%), Gaps = 24/122 (19%)

Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPS--Y 1596
            SPSS  +S  +   SP+  S    SP    T   Y+ +SP  SY  +S  Y+P+SP+  +
Sbjct: 1472 SPSSTIHSDHTVMSSPSDRSIHGWSPQ--NTEIGYTASSPNISYGYSSGEYAPSSPNIVH 1529

Query: 1597 SPTSPSYSPTSPAYSPTSPAYSP---------TSPAYSPTSPS----YSPTSPSYSPTSP 1643
            SP     S  S  Y P +P   P          S AYS +SPS    YSP      P +P
Sbjct: 1530 SPYMQGVSSPSHEYVPMTPRRMPGVHNNMGGMNSGAYSISSPSSQKLYSPV-----PFTP 1584

Query: 1644 SY 1645
            +Y
Sbjct: 1585 AY 1586


>gi|330038381|ref|XP_003239581.1| DNA-directed RNA polymerase II largest chain [Cryptomonas paramecium]
 gi|327206505|gb|AEA38683.1| DNA-directed RNA polymerase II largest chain [Cryptomonas paramecium]
          Length = 1452

 Score = 1248 bits (3230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 656/1485 (44%), Positives = 950/1485 (63%), Gaps = 109/1485 (7%)

Query: 11   EVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCT 70
            E  K+  +QF ILSPDEI++ SVV +E    +E   PK GGL D RLG I++   CET  
Sbjct: 3    EEKKINSIQFSILSPDEIKKYSVVNVETDLISEENLPKKGGLMDTRLGVIEQGYYCETDM 62

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP 130
            A+  ECPGHFGH+ L KP+FH GF++ VL I+R +    SK++ +++  + K  +KI+NP
Sbjct: 63   ASHIECPGHFGHINLQKPIFHEGFIEFVLLIIRCIDHMSSKLIFNQNSQRVKNVMKIKNP 122

Query: 131  KNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQ---QPKLTIEGMKMIA 187
              RL  I   C +                G     KN      Q   QPK   +G  ++A
Sbjct: 123  YQRLINIAKLCVSSF--------------GYRVFNKNSSDTFRQTVIQPKYYRDGWCIVA 168

Query: 188  EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQ 247
            ++        D +   EP    + L+AER+  + KRISD+DC  +GLNPK ARPDWMIL 
Sbjct: 169  KF--------DPKITSEPT---RILSAERIYEIFKRISDQDCNKIGLNPKLARPDWMILT 217

Query: 248  VLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
            VLP+PPP +RPS          DDLT++L+ IIR N++L     + AP  +I+E   LLQ
Sbjct: 218  VLPVPPPSIRPSIIFDSTSRAEDDLTYKLSDIIRCNKSLSHLIISYAPLQLINEQINLLQ 277

Query: 298  FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
            +H+ +Y DN  P   ++ Q++GRPIKSI  RL+ KEGRIRGNLMGKRVDFSARTVITPDP
Sbjct: 278  YHVGSYMDNTTPNLAKSIQKTGRPIKSIRQRLQGKEGRIRGNLMGKRVDFSARTVITPDP 337

Query: 358  TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
             I ++++G+PW++ALNLTYPE VT +N + +K+LV+ GP   PG   AKY+I++DG RLD
Sbjct: 338  NILLEEIGIPWNVALNLTYPEIVTNFNYQYMKQLVQNGPTRYPG---AKYVIKNDGTRLD 394

Query: 418  LRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 477
            LRY+KK S+ +LE+GY+VERHL DGD +LFNRQPSLHKMS+M H +KIM YSTFR+NLS 
Sbjct: 395  LRYVKKLSNVYLEIGYQVERHLRDGDVILFNRQPSLHKMSMMSHIVKIMDYSTFRMNLSA 454

Query: 478  TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
            T+PYNADFDGDEMN+H+PQ+ E+ +E+L L+ V KCI+S QSN+PV+GIVQD+L+G   +
Sbjct: 455  TTPYNADFDGDEMNLHLPQTLESTSELLNLLTVSKCILSQQSNKPVIGIVQDSLIGAFLL 514

Query: 538  TKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAW 597
            T++D F++    +N+L+   D    +P PT +KP  LWTGKQVF+LI+P  +NL R    
Sbjct: 515  TQKDVFMDMCT-LNMLLIHIDGCNSIPFPTFIKPNILWTGKQVFSLILP-SVNLTRNCIN 572

Query: 598  HADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHT 657
            ++D +     + D  V I  G+L+ G + K++ G+S+G +IHV W+E GP+    F+   
Sbjct: 573  YSDTETNF--SQDNKVIILNGQLICGVIDKRSAGSSSGGIIHVCWKEYGPEKTAFFISQF 630

Query: 658  QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
            QW++N+WLL   FS+G+ DTIA+      +   I KAKN V+ ++++ +  S E  P + 
Sbjct: 631  QWMINHWLLLCGFSVGVEDTIANKIINLKVVSIIKKAKNEVRYILRK-KVTSAEIYPDKN 689

Query: 718  MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
              E FE ++N++LNTARD+AGS  QK LS+ NN+K MV +GSKG+FINISQ+ ACVGQQN
Sbjct: 690  SDEIFECQINKILNTARDQAGSIVQKLLSDKNNIKKMVISGSKGNFINISQIIACVGQQN 749

Query: 778  VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
            V GKRI   F  R LPHF  DD GPE++GFV+NSY  GL P EFFFHAMGGREGLIDTA+
Sbjct: 750  VNGKRIDSAFGSRCLPHFLFDDNGPETKGFVQNSYSSGLNPDEFFFHAMGGREGLIDTAI 809

Query: 838  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
            KTSETGYIQRRL K MEDI+V+YD TVRN+  ++++F YGED +D+V++E+Q L+   + 
Sbjct: 810  KTSETGYIQRRLSKIMEDIVVEYDLTVRNAQKEILEFFYGEDSIDAVFLENQPLNFANIT 869

Query: 898  KSEFDKAFRFEMDEENWNPN----YMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLAT 953
              E   +++ ++    +  N    ++L+  ++  +  ++L+   D E  +L  DR+ L  
Sbjct: 870  YEELRISYKMDVKSPCYGLNTKGRFLLK--LNSKQFFEKLQGQLDFEFLQLTRDRHILQQ 927

Query: 954  EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE-------RL 1006
              ++  + +  LPVN++RLI NA   F+ +    + + P++++ +V  +++       R 
Sbjct: 928  IFSSGIEINLFLPVNIQRLIMNANNFFR-NIETSTSLFPLDIINSVKCVEKFLLNTLYRH 986

Query: 1007 KVVPGEDPLSVEAQK--NATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
            K    ++ +  E     NATLFF + LR  FASK V+ +H+ T+E F W++ EI   F +
Sbjct: 987  KKNCKKNCVCCECLSVFNATLFFRMYLRIIFASKSVIYKHKFTKEKFSWILNEICLYFRK 1046

Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPS 1124
            S+++PGEM+G +++QSIG+PATQMTLNTFHYAGVSAKNVTLG+PRL+EIINV K  KTPS
Sbjct: 1047 SIISPGEMVGMISSQSIGQPATQMTLNTFHYAGVSAKNVTLGIPRLKEIINVLKITKTPS 1106

Query: 1125 LSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYE 1184
            L+V++K   N + E+ K +Q  LE+ TL+ +  +   +YDPDP  TI   D   +K Y+E
Sbjct: 1107 LTVYIKKEYNFSYEKVKYLQQFLEFVTLKDMMSSISFFYDPDPFLTICSTDRNVIKQYFE 1166

Query: 1185 MPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN-DDNADKL 1243
            + D+ +    I  W++RI L +   +DK LS+  + EKI ++    +    N D+N    
Sbjct: 1167 ISDQVLETTHIGTWVMRIILYKNKFIDKNLSLNQIIEKIKRKIKPLVLFTLNSDENNIPN 1226

Query: 1244 ILRIRIM--NDEAPKGELN-------DESAEDDVFLKKIESNMLT------------EMA 1282
            ++R +I   +++  K  +        D S+ +  +LKK+   M++            ++ 
Sbjct: 1227 LIRFKIFWPDNKWKKKNMKQHQLYTFDYSSLEIQYLKKMSFLMMSINLKDHGTSNIKKIF 1286

Query: 1283 LRGVNLLAVMCHED--------------VDARRTTSNHLI--------EIIE---VLGIE 1317
            ++  N+   +   D              +D +   + +++        +I+E     GIE
Sbjct: 1287 IQKTNVNNTVIKNDQLVGSSEFILDTEGIDLKYVLNCNIVDPTRTVSNDILETFKTFGIE 1346

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            A R+ L+ E++ +ISFDGSYVN+RH+ +L D MT+ G LM+ITRHGI++ + GP+ + SF
Sbjct: 1347 AARKILIKEIKNLISFDGSYVNFRHIFLLADIMTHGGKLMSITRHGISKIEIGPIAKSSF 1406

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLND 1422
            EETVDI   +AVF   D ++GV+ NIM+G L  +GTG   L+++D
Sbjct: 1407 EETVDIFYQSAVFGIYDNIKGVSANIMVGNLLSVGTGKVDLFVDD 1451


>gi|120561219|gb|ABM26995.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
          Length = 1018

 Score = 1246 bits (3224), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/1030 (59%), Positives = 775/1030 (75%), Gaps = 37/1030 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELAKP++H+GF+  V  I+  VCF CSK+  DE + K+ +A +I++ K RLK + D C
Sbjct: 1    HIELAKPVYHVGFIIKVKKILECVCFFCSKLKGDETNPKYARAKQIKDRKARLKAVWDVC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEP-------------LKKNKGGCGAQQPKLTIEGMKMIAE 188
            K+K  C+  +E D P   G  P              +K  GGCG +QP +  +G+K+ AE
Sbjct: 61   KSKMICDSVEETD-PATAGAAPEEMEVDENGEPVNRRKGHGGCGHRQPVIRKDGLKLYAE 119

Query: 189  YKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV 248
            +K     N  +  +PE    KQ LT  +V  +LKRI+DED + +GL+ ++ARPDWMI+ V
Sbjct: 120  FK-----NGSEGAMPEG---KQPLTPSQVHQILKRITDEDLEDMGLSAEFARPDWMIITV 171

Query: 249  LPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQF 298
            LP+PPPPV          R  DDLTH+LA I++ N N++R E  GAP H+I EF QLLQF
Sbjct: 172  LPVPPPPVRPSIQMDGSSRGEDDLTHKLADILKANVNVKRCETEGAPVHVIDEFEQLLQF 231

Query: 299  HIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPT 358
            H+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP 
Sbjct: 232  HVATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPN 291

Query: 359  INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDL 418
            ++ID++GVP SIA NLT+PE VTPYNIER++ELV  GP+  PG   AKY+IRD G+R+DL
Sbjct: 292  LSIDEVGVPRSIARNLTFPEMVTPYNIERMQELVRNGPNEHPG---AKYVIRDTGERIDL 348

Query: 419  RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVT 478
            RY K++ D  L+ GYKVERHLNDGD V+FNRQPSLHKMS+MGH++++MPYSTFRLNLSVT
Sbjct: 349  RYHKRAGDIPLQYGYKVERHLNDGDVVIFNRQPSLHKMSMMGHKVRVMPYSTFRLNLSVT 408

Query: 479  SPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKIT 538
            SPYNADFDGDEMNMHVPQS ET AE+ E+ MVPK I+SPQSN+PVMGIVQDTL G RK T
Sbjct: 409  SPYNADFDGDEMNMHVPQSEETNAEIKEICMVPKQIISPQSNKPVMGIVQDTLCGIRKFT 468

Query: 539  KRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWH 598
            KRD+F++K + MNILMW  D+DG +P P ILKP+PLWTGKQ+  +I+PK IN     + H
Sbjct: 469  KRDSFVDKALVMNILMWVADWDGVIPTPAILKPQPLWTGKQLVTMIVPKNINCITYHSAH 528

Query: 599  ADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQ 658
             D++K  ++ GDT V +E GEL+SG +CKKT+G S G  +HV   E GP+ A++F    Q
Sbjct: 529  PDDEKSDISPGDTKVVVENGELISGIVCKKTVGASNGGWVHVAMNEHGPEVAKRFFSGAQ 588

Query: 659  WLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTM 718
             +VNYWLLQ+ FSIGIGDTIAD KT E I +TI+ AK  V  +I  AQ  +LE  PG T+
Sbjct: 589  AVVNYWLLQHGFSIGIGDTIADGKTTEHITETINSAKQRVSEIILSAQQDTLECAPGMTI 648

Query: 719  MESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNV 778
             E+FENKVN+ LN ARD +G SA+KSL E NN+K MV +GSKGSFINISQM+ACVGQQNV
Sbjct: 649  RETFENKVNRELNRARDHSGRSAEKSLKEENNVKQMVVSGSKGSFINISQMSACVGQQNV 708

Query: 779  EGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 838
            EGKRIPFGF  RTLPHF+KDDYGPESRGFVENSYLRGLTPQEF+FHAMGGREGLIDTAVK
Sbjct: 709  EGKRIPFGFKFRTLPHFSKDDYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVK 768

Query: 839  TSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
            T+ETGYIQRRLVKA+ED+MVKYDGTVRNSLG++IQF YGEDGMD   +E QTLDS++M  
Sbjct: 769  TAETGYIQRRLVKALEDVMVKYDGTVRNSLGNIIQFCYGEDGMDGCHVEKQTLDSIRMAN 828

Query: 899  SEFDKAFRFE-MDEENWNPNYMLQ-EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIA 956
             +F+K+++ + MD+E    + +L+   + D++     + + D E ++L  DR  L   I 
Sbjct: 829  DKFEKSYKVDVMDKEKGFKSGVLEFNILKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIF 888

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            TSGD +WPLP NL+RL+WNAQ  F +D R+PS++HP++++E V  L +RL VV G D LS
Sbjct: 889  TSGDQAWPLPGNLRRLVWNAQNIFHIDKRKPSNLHPLQIIEGVKLLIDRLIVVRGSDKLS 948

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
             EAQ NATL +  LLRST ++KRVL++  L  +AFEW++GEIE+RF  + VAPGEM+G V
Sbjct: 949  NEAQLNATLLYQCLLRSTLSTKRVLEDFHLNAQAFEWILGEIETRFQTAQVAPGEMVGTV 1008

Query: 1077 AAQSIGEPAT 1086
            AAQSIGEPAT
Sbjct: 1009 AAQSIGEPAT 1018


>gi|120561241|gb|ABM27005.1| RNA polymerase II largest subunit, partial [Neocallimastix frontalis]
          Length = 1004

 Score = 1239 bits (3205), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/1021 (58%), Positives = 764/1021 (74%), Gaps = 33/1021 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELA+P+FHIGF+  +  I+  VCF CSK+  DE + K  QA +I++ K R   +   C
Sbjct: 1    HIELARPVFHIGFLPKIKKILECVCFQCSKLKVDESNTKLLQARQIKDGKKRFHAVWSLC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            K KT CE  DEI    ++  +  ++   GCG +QP +  EG+  +  YK   K ++    
Sbjct: 61   KGKTTCESSDEI----ENENDEKRRGHNGCGFKQPTIRREGL--VLYYKFNEKSSE---- 110

Query: 202  LPEPVER---KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRP 258
              E + R   KQ LTAERVL + K+ISDEDC  +GLNP +ARP+WM++ VLP+PPP VRP
Sbjct: 111  --EGIGRDTGKQVLTAERVLNIFKKISDEDCIDMGLNPNWARPEWMLITVLPVPPPAVRP 168

Query: 259  S----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
            S          DDLTH+L  IIR N NLR  E +G+PAH+++E+  LLQFH+AT+ DN+ 
Sbjct: 169  SISMGGAARGEDDLTHKLGDIIRANINLRNHEADGSPAHVVNEYEALLQFHVATFMDNDT 228

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
             G P+A Q+SGRP+K+I +RLK KEGRIRGNLMGKRVDFSARTVIT DP I+IDQ+GVP 
Sbjct: 229  AGIPQAMQKSGRPLKAIRARLKGKEGRIRGNLMGKRVDFSARTVITGDPNISIDQVGVPR 288

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIA NLT+PETVTP+NI+ L++LV  GP+  PG   AKY+ +D+G R+DL++  +S   H
Sbjct: 289  SIARNLTFPETVTPFNIDELQQLVNNGPNEHPG---AKYVFKDNGDRIDLKF-ARSGSVH 344

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            L++GYKVERH+NDGD V+FNRQPSLHKMS+MGH+IK+MPYSTFRLNLSVTSPYNADFDGD
Sbjct: 345  LQVGYKVERHINDGDLVIFNRQPSLHKMSMMGHKIKVMPYSTFRLNLSVTSPYNADFDGD 404

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMN+HVPQS+ET+AEV E+ MVPK IVSPQ+N+PVMGIVQDTL G RK TKRD F+ +D 
Sbjct: 405  EMNLHVPQSYETKAEVQEICMVPKQIVSPQANKPVMGIVQDTLCGIRKFTKRDCFLTRDF 464

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
             MNI+MW  D+DG VP P ILKP PLWTGKQ+ +LIIPK IN+    + H DN+   ++ 
Sbjct: 465  VMNIIMWVPDWDGVVPPPCILKPIPLWTGKQIMSLIIPK-INIVGYHSTHPDNEDTDISP 523

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            GDT V IE GELL+G LCKKT+G+S   +IHV+  E GP+ A+ F   TQ +VNYWLLQN
Sbjct: 524  GDTKVLIENGELLAGILCKKTVGSSQNGIIHVVMNEYGPETAKLFFNGTQTVVNYWLLQN 583

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDTIAD  TMETIN  I+ AK  V  +I QAQ   LE +PG T+ E+FE+ VN+
Sbjct: 584  GFSIGIGDTIADRNTMETINKAIASAKQAVNEVILQAQQCKLECQPGLTIRETFESLVNR 643

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
             LN ARD AG+SAQKSL E NN+K MV +GSKGSFINISQMTACVGQQNVEGKRIPFGF 
Sbjct: 644  HLNKARDSAGASAQKSLREYNNVKQMVVSGSKGSFINISQMTACVGQQNVEGKRIPFGFK 703

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             RTLPHFTKDD  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRR
Sbjct: 704  YRTLPHFTKDDQSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRR 763

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            L+K++ED+ +KYDGTVRNS G +IQF YGEDGMD   +E Q L+S++M  ++F+K ++ +
Sbjct: 764  LIKSLEDVSIKYDGTVRNSFGHIIQFCYGEDGMDGTSVEKQQLESIRMSDAKFEKFYKID 823

Query: 909  MDEENWN--PNYMLQEYIDDL-KTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL 965
            + ++++   P  +    ++DL +    +++  D E + L+ DR      I  +GDSSWPL
Sbjct: 824  LTDKDFGLKPKTLQFSILEDLAQQSNVVQEKLDEEYKSLQEDRKLFREFIFKNGDSSWPL 883

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
            PVN++RLIWNAQ  F ++ R+ SD+HP+ + E  D+L +RL VV G+D LS EAQ N+T+
Sbjct: 884  PVNVRRLIWNAQNIFSINKRKESDLHPLYICEKRDELLKRLVVVRGDDKLSKEAQINSTI 943

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPA 1085
             F  L+++  ++KR+L+ + L + AF+W+IGEIE RF Q+LV PGEM+G +AAQSIGEPA
Sbjct: 944  NFFALIKTCLSTKRILEYYHLNKAAFDWLIGEIEVRFNQALVQPGEMVGTIAAQSIGEPA 1003

Query: 1086 T 1086
            T
Sbjct: 1004 T 1004


>gi|83320434|gb|ABC02844.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
          Length = 1015

 Score = 1238 bits (3204), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1023 (59%), Positives = 770/1023 (75%), Gaps = 31/1023 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELAKP++H+GF+  V  I+  VCF CSK+  DE + K+ +A +I++ K RLK + D C
Sbjct: 1    HIELAKPVYHVGFIIKVKKILECVCFFCSKLKGDETNPKYARAKQIKDRKARLKAVWDVC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPL-----------KKNKGGCGAQQPKLTIEGMKMIAEYK 190
            K+K  C+  +E D      +E +           +K  GGCG +QP +   G+K+ AE+K
Sbjct: 61   KSKMICDSVEETDPATAGAQEEMEVDENGEPVNRRKGHGGCGHRQPVIRKNGLKLFAEFK 120

Query: 191  AQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP 250
                K+  +  +PE    KQ LT  +V  +LKRI+DED + +GL+ ++ARPDWMI+ VLP
Sbjct: 121  --NGKSYFKGAMPED---KQPLTPSQVHQILKRITDEDLEDMGLSAEFARPDWMIITVLP 175

Query: 251  IPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHI 300
            +PPPPV          R  DDLTH+LA I++ N N++R E  GAP H+I EF QLLQFH+
Sbjct: 176  VPPPPVRPSIQMDGSSRGEDDLTHKLADILKANVNVKRCETEGAPVHVIDEFEQLLQFHV 235

Query: 301  ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTIN 360
            ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP ++
Sbjct: 236  ATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLS 295

Query: 361  IDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRY 420
            ID++GVP SIA NLT+PE VTPYNIER++ELV  GP+  PG   AKY+IRD G+R+DLRY
Sbjct: 296  IDEVGVPRSIARNLTFPEMVTPYNIERMQELVRNGPNEHPG---AKYVIRDTGERIDLRY 352

Query: 421  LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP 480
             K++ D  L+ GYKVERHLN+GD V+FNRQPSLHKMS+MGH++++MPYSTFRLNLSVTSP
Sbjct: 353  HKRAGDIPLQYGYKVERHLNNGDVVIFNRQPSLHKMSMMGHKVRVMPYSTFRLNLSVTSP 412

Query: 481  YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
            YNADFDGDEMNMHVPQS ET+AE+ E+ MVPK I+SPQSN+PVMGIVQDTL G RK TKR
Sbjct: 413  YNADFDGDEMNMHVPQSEETKAEIKEICMVPKQIISPQSNKPVMGIVQDTLCGIRKFTKR 472

Query: 541  DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD 600
            D F++K + MNILMW  D+DG +P P ILKP+PLWTGKQ+  +I+PK IN     + H D
Sbjct: 473  DCFVDKALVMNILMWVADWDGVIPTPAILKPQPLWTGKQLVTMIVPKNINCITYHSAHPD 532

Query: 601  NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
            ++K  ++ GDT V +E GELLSG +CKKT+G S G  +HV   E GP+ A+KF    Q +
Sbjct: 533  DEKSDISPGDTKVVVENGELLSGIVCKKTVGASNGGWVHVAMNEHGPEVAKKFFSGAQAV 592

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            VNYWLLQ+ FSIGIGDTIAD +T E I +TI+ AK  V  +I  AQ  +LE  PG T+ E
Sbjct: 593  VNYWLLQHGFSIGIGDTIADGQTTEHITETINSAKQRVSEIILSAQQDTLECAPGMTIRE 652

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FENKVN+ LN ARD +G SA+KSL E NN+K MV +GSKGSFINISQM+ACVGQQNVEG
Sbjct: 653  TFENKVNRELNRARDHSGRSAEKSLKEENNVKQMVVSGSKGSFINISQMSACVGQQNVEG 712

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEF+FHAMGGREGLIDTAVKT+
Sbjct: 713  KRIPFGFKFRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTA 772

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRLVKA+ED+MVKYDGTVRNSLG++IQF YGEDGMD  ++E QTLDS++M   +
Sbjct: 773  ETGYIQRRLVKALEDVMVKYDGTVRNSLGNIIQFCYGEDGMDGCFVEKQTLDSIRMSNEK 832

Query: 901  FDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS 958
            F+K+++ + MD E+ + P  +    + D++     + + D E ++L  DR  L   I TS
Sbjct: 833  FEKSYKVDVMDKEKGFKPGVLEFNILKDVEGNDSTQMMLDEEYRQLCDDRRVLREFIFTS 892

Query: 959  GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVE 1018
            GD +WPLP NLKRL+WNAQ  F +D R+PS++HP++++E V  L +RL VV G D LS E
Sbjct: 893  GDQAWPLPGNLKRLVWNAQNIFHIDKRKPSNLHPLQIIEGVKLLIDRLVVVRGSDKLSNE 952

Query: 1019 AQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAA 1078
            AQ NATL +  LLRST ++KRVL++  L  +AFEW++GEIE+RF  + VAPGEM+G VAA
Sbjct: 953  AQLNATLLYQCLLRSTLSTKRVLEDFHLNAQAFEWILGEIETRFQTAQVAPGEMVGTVAA 1012

Query: 1079 QSI 1081
            QSI
Sbjct: 1013 QSI 1015


>gi|120561221|gb|ABM26996.1| RNA polymerase II largest subunit, partial [Funneliformis mosseae]
          Length = 1054

 Score = 1227 bits (3175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 621/1063 (58%), Positives = 782/1063 (73%), Gaps = 66/1063 (6%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELAKP+FHIGF+  V  I+  +C +CSK+  D+ + KF  A KIR+PK RL+ + D C
Sbjct: 1    HIELAKPVFHIGFLPKVKKILECICIHCSKLKTDDSNAKFAVARKIRDPKRRLRAVWDIC 60

Query: 142  KNKTKCEGGDEID---------------------------VPGQD-GEEPLKKNKGGCGA 173
            K+KT CE G+E +                            P +D G   +KK  GGCGA
Sbjct: 61   KSKTICEKGEEQENDPDKTSDYEDDYIPNGQNKPIPQRTTTPAEDLGLIKVKKPHGGCGA 120

Query: 174  QQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
            +QP +  +G+K+   YKA+    D +EQ  +  E +Q LT  +V  + K+IS ED   LG
Sbjct: 121  RQPTIRKDGLKLYMNYKAR----DSEEQTGQ--ETRQVLTPAQVYIIFKKISSEDLIDLG 174

Query: 234  LNPKYARPDWMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNG 283
            LN +YARPDWMI+  LP+PPPPV          R  DDLTH+LA I++ N+NLRR E +G
Sbjct: 175  LNEEYARPDWMIITCLPVPPPPVRPSIQMDGTSRGEDDLTHKLADILKANQNLRRYESDG 234

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGK 343
            +PAH++SEF  LLQFH ATY DNE+ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGK
Sbjct: 235  SPAHVVSEFESLLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGK 294

Query: 344  RVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKT 403
            RVDFSARTVIT DP I++D++GVP SIA NLT+PE VTP+N++ L+ELV+ GP   PG  
Sbjct: 295  RVDFSARTVITGDPNISVDEVGVPKSIASNLTFPEIVTPFNVDLLQELVKNGPTVHPG-- 352

Query: 404  GAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
             AKY+IRD G+R+DL++   ++   L+ G+KVERH+N+GD ++FNRQPSLHKMS+MGH++
Sbjct: 353  -AKYVIRDTGERIDLKHTSGTNVVRLQNGWKVERHINNGDVIIFNRQPSLHKMSMMGHKV 411

Query: 464  KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
            ++MP+STFRLNLSVTSPYNADFDGDEMNMHVPQS ET+AE+ E+ MVPK IVSPQSN+PV
Sbjct: 412  RVMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQSVETKAEIKEICMVPKQIVSPQSNKPV 471

Query: 524  MGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNL 583
            MGIVQDTL   RK TKRD F+ KD+ MNILMW +D+DGK+P P ILKP PLWTGKQ+ ++
Sbjct: 472  MGIVQDTLCAIRKFTKRDCFLSKDLVMNILMWVKDWDGKIPIPCILKPIPLWTGKQILSM 531

Query: 584  IIPKQINLFRTA-AWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIW 642
            IIPK IN      + H D +   ++ GDT V IE GELL G +CKKT+GT+   LIHVI 
Sbjct: 532  IIPKGINSXNLRHSTHPDGENTDMSPGDTKVLIEDGELLCGIVCKKTVGTAQQGLIHVIM 591

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
            +E+GP+ A+ FL   Q +VNYWLLQN FSIGIGDTIAD  TM++I  TI+ AK  VK +I
Sbjct: 592  QELGPNRAKDFLNGCQAVVNYWLLQNGFSIGIGDTIADKDTMDSITQTINNAKERVKEVI 651

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
              AQ   LE +PG T+ ESFEN+VN+ LNTARD AG SA+KSLSE NN+K MV AGSKGS
Sbjct: 652  LSAQQNKLECQPGMTIRESFENQVNKELNTARDSAGRSAEKSLSEDNNVKQMVIAGSKGS 711

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
            FINISQMTACVGQQNVEGKRIP+GF  RTLPHFTKDD+ PESRGFVENSYLRGLTPQEFF
Sbjct: 712  FINISQMTACVGQQNVEGKRIPYGFKFRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFF 771

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAMGGREGLIDTAVKT+ETGYIQRRLVKA+ED+MVKYDGTVRNSLGD++QF YGEDGMD
Sbjct: 772  FHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDILQFCYGEDGMD 831

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYID---------------DL 927
            + ++ESQ +DSL +    FDK +  E+ +         ++  +                +
Sbjct: 832  ACYVESQNIDSLPISNDTFDKKYLVELPKPEEKEKEKEEKEKENKEEKKKQELEQEKAKI 891

Query: 928  KTIKEL-RDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDP-- 984
            K+  E+ +D   AE ++L+ DR+ L T I   GD+ WPLPVN+KRLI NAQ+ FK+ P  
Sbjct: 892  KSHDEIVKDKIKAEYEQLKEDRHLLQTFIFPKGDNRWPLPVNIKRLIKNAQQKFKIIPSQ 951

Query: 985  RRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEH 1044
            R  SD+  ++V++++D+L  +L+VV G+D +SVEAQ NATL F IL+RS  ASKRV+ E 
Sbjct: 952  RTKSDLQFVDVIDSIDELLSKLEVVKGKDRISVEAQSNATLLFKILIRSWLASKRVIDEF 1011

Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQ 1087
             L ++A +W++GEIESRF +SLV+PGEM+G VAAQSIGEPATQ
Sbjct: 1012 HLNQQALKWILGEIESRFRRSLVSPGEMVGTVAAQSIGEPATQ 1054


>gi|316997013|dbj|BAJ52634.1| RNA polymerase II largest subunit [Ephydatia fluviatilis]
          Length = 1146

 Score = 1224 bits (3167), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/1153 (55%), Positives = 802/1153 (69%), Gaps = 91/1153 (7%)

Query: 491  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
            N+HVPQS ET+AE+ EL+MV + I++PQSN+PVMGIVQD+L    K+TKRD F+EK+  M
Sbjct: 1    NLHVPQSLETKAELQELLMVHRNILTPQSNQPVMGIVQDSLTAATKMTKRDVFLEKESVM 60

Query: 551  NILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKG---IL 606
            N+LMW   +DGKVP+P ILKP+ LWTGKQ+F+LIIP  IN+ +T + H D+ D G    +
Sbjct: 61   NLLMWLPSWDGKVPRPAILKPKQLWTGKQIFSLIIPSNINMIKTHSTHPDDEDDGPYKFI 120

Query: 607  TAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 666
            + GDT V +E G+LL G L K TLG   GSL+H+++ E G + AR F G  Q +VN +LL
Sbjct: 121  SPGDTKVIVENGDLLCGILSKDTLGNKGGSLMHLVFLEKGVEVARDFYGSIQTVVNNYLL 180

Query: 667  QNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKV 726
                SIGIGDTIAD  T + I  TI +AK +V  +IK+A +  LEP PG T+ ++FEN+V
Sbjct: 181  LEGHSIGIGDTIADKVTYDEIQKTIRQAKFDVIEVIKKAHNNELEPTPGNTLRQTFENQV 240

Query: 727  NQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 786
            N++LN ARD+ GSSAQKSLS+ NN K MV+AGSKGS INISQ+ ACVGQQNVEGKRIPFG
Sbjct: 241  NRILNEARDKTGSSAQKSLSDFNNFKVMVSAGSKGSKINISQVIACVGQQNVEGKRIPFG 300

Query: 787  FVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 846
            F  RTLPHF KDD+GPES+GFVENSYL GLTP EF+FHAMGGREGLIDTAVKTSETGYIQ
Sbjct: 301  FRHRTLPHFIKDDFGPESKGFVENSYLAGLTPTEFYFHAMGGREGLIDTAVKTSETGYIQ 360

Query: 847  RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFR 906
            RRL+KAME +MV YDGT+RNS   +IQ  YGEDGMD  ++E Q L ++K   S F+K F+
Sbjct: 361  RRLIKAMEGLMVHYDGTIRNSNKQMIQLRYGEDGMDGCFMEFQQLPTIKPSSSAFEKKFK 420

Query: 907  FEM-------DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSG 959
             +        D   W      +  +  L T  E++++   E +KL+ DR  L + I  SG
Sbjct: 421  LDCTTPTGQRDLHRW----FEEPIVRKLTTDTEVQNIVMKEFEKLKEDRIALRS-IFPSG 475

Query: 960  DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEA 1019
            +S   LPVNL RLIWNAQK F ++ R  SD+ P +V+  V+ L+++L +V GED +S EA
Sbjct: 476  NSRVALPVNLSRLIWNAQKIFHINLRGRSDLDPCKVINDVEMLKKKLIIVGGEDDISKEA 535

Query: 1020 QKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQ 1079
            Q+NATL FN LLRST  S+RV +EH+LT+EAFEWV+G IE+RF Q+   PGEM+G +AAQ
Sbjct: 536  QENATLLFNCLLRSTLCSRRVAEEHKLTKEAFEWVLGXIEARFKQAQAHPGEMVGALAAQ 595

Query: 1080 SIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER 1139
            S+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K+ KTPSL++FLK       ER
Sbjct: 596  SLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSLTIFLKGQAAKGAER 655

Query: 1140 AKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWL 1199
             K+V C +EYTTLR VT  T ++YDPDP  T+I ED EFV  YYEMPD D  P +ISPWL
Sbjct: 656  CKDVLCRIEYTTLRKVTANTAIYYDPDPQHTVIAEDQEFVSIYYEMPDFD--PTRISPWL 713

Query: 1200 LRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGEL 1259
            LR+EL+R+ M DKKL+M  +AEK++  F +DL C++ DDN++KL LRIR+++ +  K + 
Sbjct: 714  LRLELDRKRMTDKKLTMEQIAEKVSSHFGEDLNCMYTDDNSEKLALRIRVLSSDDGKTQG 773

Query: 1260 NDE----SAEDDVFLKKIESNMLTEMALR------------------------------- 1284
             DE      EDD+FL+ +E+N+L++MAL+                               
Sbjct: 774  EDEEMVDKMEDDMFLRCLETNLLSDMALQGIEQIAKVYMHYPTQDSKKRIIVNDEGQFKA 833

Query: 1285 ---------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
                     GVNL+ V+    VD  RTTSNH++EI  VLGIEAVR+A+  EL  VISFDG
Sbjct: 834  IQEWILETDGVNLIRVLSEPSVDPVRTTSNHIVEIFSVLGIEAVRKAVEKELHHVISFDG 893

Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
            SYVNYRHLA+LCD MT RGHLMAITRHG+NR D G +MRCSFEETVDIL++AAV  E D 
Sbjct: 894  SYVNYRHLALLCDIMTCRGHLMAITRHGVNRQDVGALMRCSFEETVDILVEAAVHCEVDK 953

Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEF---GMTP------ 1446
            +RGV+E IMLGQ+   GTG   L L+ E  K+ +E+   + +    F   GMTP      
Sbjct: 954  MRGVSECIMLGQIHKGGTGAVDLLLDAEKCKHGMEIPTNTGLGVGPFYGSGMTPTGAGGM 1013

Query: 1447 ARSPVSGT------PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMA-FSPTSSPGYS 1499
            A +P  G       P+    M PG        ++P   A FSP     + FSP+ SPG+S
Sbjct: 1014 AMTPWLGAQTPTLEPWTGPSMGPG--------MTPSAGAAFSPAASETSGFSPSYSPGWS 1065

Query: 1500 --PSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT 1557
              P+SP Y+P SPG+ P+SPGYSP SP YSP SPG  PTSPTYSPSSPGYSPTSP YSPT
Sbjct: 1066 PNPASP-YAPRSPGF-PSSPGYSPASPQYSPASPG-GPTSPTYSPSSPGYSPTSPTYSPT 1122

Query: 1558 SPSYSPTSPSYSP 1570
            SP YSP S  YSP
Sbjct: 1123 SPKYSPASSGYSP 1135



 Score =  115 bits (289), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/136 (51%), Positives = 85/136 (62%), Gaps = 10/136 (7%)

Query: 1518 GYSPTSPGYSPTSPGYSPTSPTYSPSS-----PGYSPTS-PAYSPTSPSYSPTSPSYSPT 1571
            G +PT  G    +P     +PT  P +     PG +P++  A+SP +   S  SPSYSP 
Sbjct: 1004 GMTPTGAGGMAMTPWLGAQTPTLEPWTGPSMGPGMTPSAGAAFSPAASETSGFSPSYSP- 1062

Query: 1572 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY 1631
              S +P SP Y+P SP + P+SP YSP SP YSP SP   PTSP YSP+SP YSPTSP+Y
Sbjct: 1063 GWSPNPASP-YAPRSPGF-PSSPGYSPASPQYSPASPG-GPTSPTYSPSSPGYSPTSPTY 1119

Query: 1632 SPTSPSYSPTSPSYSP 1647
            SPTSP YSP S  YSP
Sbjct: 1120 SPTSPKYSPASSGYSP 1135



 Score =  110 bits (274), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/157 (45%), Positives = 88/157 (56%), Gaps = 23/157 (14%)

Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSP-TSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSY 1603
            G +PT       +P     +P+  P T PS  P  +PS      ++SP +   S  SPSY
Sbjct: 1004 GMTPTGAGGMAMTPWLGAQTPTLEPWTGPSMGPGMTPS---AGAAFSPAASETSGFSPSY 1060

Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
            SP           +SP     +P SP Y+P SP + P+SP YSP SP YSP SP   PTS
Sbjct: 1061 SP----------GWSP-----NPASP-YAPRSPGF-PSSPGYSPASPQYSPASPG-GPTS 1102

Query: 1664 PAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAK 1700
            P YSP+SPGYSPTSP+YSPTSP YSP S  Y+P   +
Sbjct: 1103 PTYSPSSPGYSPTSPTYSPTSPKYSPASSGYSPHGGR 1139



 Score = 95.5 bits (236), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 85/140 (60%), Gaps = 12/140 (8%)

Query: 1625 SPTSPSYSPTSPSYSPTSPSYSP-TSPSYSP--TSPSYSPTSPAYSPTSPGYSPT-SPSY 1680
            +PT       +P     +P+  P T PS  P  T  + +  SPA S TS G+SP+ SP +
Sbjct: 1006 TPTGAGGMAMTPWLGAQTPTLEPWTGPSMGPGMTPSAGAAFSPAASETS-GFSPSYSPGW 1064

Query: 1681 SPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPS 1740
            SP     +P SP Y P+S  +  S  YSP+SP+ SPASP  PTSP YSP+S  YSPTSP+
Sbjct: 1065 SP-----NPASP-YAPRSPGFPSSPGYSPASPQYSPASPGGPTSPTYSPSSPGYSPTSPT 1118

Query: 1741 YSPSSPTYSP-SSPYNAGGG 1759
            YSP+SP YSP SS Y+  GG
Sbjct: 1119 YSPTSPKYSPASSGYSPHGG 1138



 Score = 92.0 bits (227), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 65/147 (44%), Positives = 77/147 (52%), Gaps = 24/147 (16%)

Query: 1604 SPTSPAYSPTSPAYSPTSPAYSP-TSPSYSP-----TSPSYSPTSPSYSPTSPSYSPTSP 1657
            +PT       +P     +P   P T PS  P        ++SP +   S  SPSYSP   
Sbjct: 1006 TPTGAGGMAMTPWLGAQTPTLEPWTGPSMGPGMTPSAGAAFSPAASETSGFSPSYSP-GW 1064

Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
            S +P SP Y+P SPG+ P+SP YSP SP YSP SP                P+SP  SP+
Sbjct: 1065 SPNPASP-YAPRSPGF-PSSPGYSPASPQYSPASPG--------------GPTSPTYSPS 1108

Query: 1718 SP-YSPTSPNYSPTSSSYSPTSPSYSP 1743
            SP YSPTSP YSPTS  YSP S  YSP
Sbjct: 1109 SPGYSPTSPTYSPTSPKYSPASSGYSP 1135



 Score = 85.9 bits (211), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/146 (44%), Positives = 86/146 (58%), Gaps = 22/146 (15%)

Query: 1639 SPTSPSYSPTSPSYSPTSPSYSP-TSPAYSPTSPGYSPTS-PSYSPTSPTYSPTSPSYNP 1696
            +PT       +P     +P+  P T P+  P   G +P++  ++SP +   S  SPSY+P
Sbjct: 1006 TPTGAGGMAMTPWLGAQTPTLEPWTGPSMGP---GMTPSAGAAFSPAASETSGFSPSYSP 1062

Query: 1697 QSAKYSPSLA--YSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
                +SP+ A  Y+P SP   P+SP YSP SP YSP S    PTSP+YSPSSP YSP+SP
Sbjct: 1063 ---GWSPNPASPYAPRSPGF-PSSPGYSPASPQYSPASPG-GPTSPTYSPSSPGYSPTSP 1117

Query: 1754 YNAGGGNPDYSPSSPQYSP-SAGYSP 1778
                     YSP+SP+YSP S+GYSP
Sbjct: 1118 --------TYSPTSPKYSPASSGYSP 1135



 Score = 63.5 bits (153), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/136 (41%), Positives = 74/136 (54%), Gaps = 29/136 (21%)

Query: 1667 SPTSPGYSPTSPSYSPTSPTYSP-TSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPT-S 1724
            +PT  G    +P     +PT  P T PS  P     +PS A +  SP  S  S +SP+ S
Sbjct: 1006 TPTGAGGMAMTPWLGAQTPTLEPWTGPSMGP---GMTPS-AGAAFSPAASETSGFSPSYS 1061

Query: 1725 PNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-------GYS 1777
            P +SP     +P SP Y+P SP + PSSP         YSP+SPQYSP++        YS
Sbjct: 1062 PGWSP-----NPASP-YAPRSPGF-PSSP--------GYSPASPQYSPASPGGPTSPTYS 1106

Query: 1778 PSAPGYSPSSTSQYTP 1793
            PS+PGYSP+S + Y+P
Sbjct: 1107 PSSPGYSPTSPT-YSP 1121



 Score = 48.9 bits (115), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 25/117 (21%)

Query: 1672 GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS 1731
            G +PT       +P     +P+  P +    PS+      P ++P++  +     +SP +
Sbjct: 1004 GMTPTGAGGMAMTPWLGAQTPTLEPWTG---PSMG-----PGMTPSAGAA-----FSPAA 1050

Query: 1732 SSYSPTSPSYSPS-SPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
            S  S  SPSYSP  SP  +P+SPY         +P SP +  S GYSP++P YSP+S
Sbjct: 1051 SETSGFSPSYSPGWSP--NPASPY---------APRSPGFPSSPGYSPASPQYSPAS 1096


>gi|83320446|gb|ABC02850.1| RNA polymerase II largest subunit, partial [Mortierella verticillata]
          Length = 1016

 Score = 1221 bits (3159), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 596/1028 (57%), Positives = 769/1028 (74%), Gaps = 40/1028 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELAKP++  GF+  V  I+  VC++CSK+  D+++ KF +A +IR+PK RLK + +  
Sbjct: 1    HIELAKPVYLNGFLTKVKKILECVCYSCSKLKIDDNNSKFVRARRIRDPKVRLKAVWELA 60

Query: 142  KNKTKCEGGDEIDVPGQDGE-------EPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRK 194
            K+K  CEGGD+ID   Q+ E        P K + GGCG +QP    EG+ +   +KA   
Sbjct: 61   KSKMVCEGGDDIDAEMQEEEVDENGMPRPKKISHGGCGHRQPIFRKEGLGLSVNFKAN-- 118

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
             +DD +      E K+TLT      +LKRISDED + +GL+P++ARP+WMI+ VLPIPP 
Sbjct: 119  ASDDSQP-----EGKRTLTPSDAYHILKRISDEDIEAMGLSPEFARPEWMIMTVLPIPPL 173

Query: 255  PVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
             VRPS          DDLTH+L  II+ N ++ R  ++G PAH+I +  QLLQ+H+ATY 
Sbjct: 174  AVRPSIQMDGSSTGEDDLTHKLFAIIKTNADVYRCAQDGTPAHLIQQHEQLLQYHVATYM 233

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP A  ++GRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP ++ID++
Sbjct: 234  DNDIAGQPPAAHKNGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEV 293

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPE VTPYNI++L++LV  GP   PG   A Y+IRDDGQR+DLR+ K+ 
Sbjct: 294  GVPRSIARTLTYPELVTPYNIDKLQKLVRNGPTEHPG---AVYVIRDDGQRIDLRWNKRE 350

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
                L+LG+KVERH+NDGD V+FNRQPSLHKMS+MGH+I++MPYSTFRLNLSVTSPYNAD
Sbjct: 351  VP--LQLGWKVERHINDGDVVIFNRQPSLHKMSMMGHKIRVMPYSTFRLNLSVTSPYNAD 408

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ E+ MVP+ IVSPQSN+PVMGIVQDTL G RK TKRD F+
Sbjct: 409  FDGDEMNLHVPQSVETRAEITEICMVPRQIVSPQSNKPVMGIVQDTLCGVRKFTKRDCFL 468

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
             K++ MN++MW   ++G +P P ILKP+PLWTG+Q+ ++IIPK IN     + H DN++ 
Sbjct: 469  TKEMVMNLVMWVPGWEGFLPTPAILKPKPLWTGRQMLSMIIPKGINCICYHSTHPDNEES 528

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
             ++ GDT V +E GEL+ G +CKKT+GTS G LIHVI  + GP+ A+ F    Q +VNYW
Sbjct: 529  DISPGDTKVIVENGELICGIVCKKTVGTSGGGLIHVIMNQHGPEVAKTFFNGCQTVVNYW 588

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LLQ+ FSIGIGDT+AD  T+ TI   IS A NNV +LI QAQ   LE +PG T+ E+FE+
Sbjct: 589  LLQHGFSIGIGDTVADRSTVMTITSIISNATNNVNDLIIQAQQDKLECKPGMTLRETFES 648

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             VN+ LNTARD+AG  AQ+SL E NN+K MV +GSKGSFIN+SQMTACVGQQNVEGKRIP
Sbjct: 649  LVNRALNTARDDAGKMAQQSLREDNNVKQMVISGSKGSFINVSQMTACVGQQNVEGKRIP 708

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF  RTLPHFTKDD+ PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGY
Sbjct: 709  FGFKYRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGY 768

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+ED+MVKYDGTVRNSLG VIQF YGEDGMD+  +E Q LD++KM  + F+K 
Sbjct: 769  IQRRLVKALEDVMVKYDGTVRNSLGHVIQFCYGEDGMDACHVEKQPLDTVKMSNAAFEKK 828

Query: 905  FRFEMDE-----ENWNPNYMLQEYI--DDLKTIK----ELRDVFDAEVQKLEADRYQLAT 953
            +R ++ +     +N   +Y + + I   D +  K    +++ + + E ++L+ DR+ L  
Sbjct: 829  YRIDLTDKSKSFKNGTLDYNVFKQIAEADEEAAKRGEPDMQTLLEQEFKQLDEDRHLLRN 888

Query: 954  EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
             I T GD+SWP+P N++R IWN+++ F VD +RPSD+ P  ++E++  L+++L VV G D
Sbjct: 889  YIFTEGDNSWPMPTNIRRYIWNSKQMFHVDHKRPSDLDPRHILESIKNLEKQLVVVRGTD 948

Query: 1014 PLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
             +SVEAQ NATL F +L+RST A +RV++E+ LTREAF+WV+GEI SRF  ++V PGEM+
Sbjct: 949  RISVEAQDNATLLFRMLIRSTLAVRRVIEEYHLTREAFDWVVGEIGSRFAHAIVNPGEMV 1008

Query: 1074 GCVAAQSI 1081
            G VAAQSI
Sbjct: 1009 GTVAAQSI 1016


>gi|162606578|ref|XP_001713319.1| DNA-directed RNA polymerase II largest chain [Guillardia theta]
 gi|12580785|emb|CAC27103.1| DNA-directed RNA polymerase II largest chain [Guillardia theta]
          Length = 1473

 Score = 1218 bits (3152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 669/1501 (44%), Positives = 931/1501 (62%), Gaps = 130/1501 (8%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMA 74
            ++++QFGILSPDEI ++SVVQ++   T E   PK GGL D R+GT+D++  C T   +  
Sbjct: 8    IKLIQFGILSPDEILKLSVVQVDSDMTFEHNLPKLGGLLDQRMGTVDKEFFCTTDMGSFL 67

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            E PG+FGH+ L +P+FH GFM  VL I+R +    SK++ +E+  K K  LKI+N   RL
Sbjct: 68   ESPGYFGHISLNRPVFHEGFMDYVLRILRCIDHTTSKLIINENSQKIKNVLKIKNLSQRL 127

Query: 135  KKI----LDAC---KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIA 187
              I    L AC   KNK      DEI       E+ +        + QPK + +G  ++A
Sbjct: 128  NIISKLCLTACNLKKNKFNNFLKDEII------EKRI--------SIQPKYSRDGWCIVA 173

Query: 188  EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQ 247
            ++        D     EP    + ++AER+  +  +I+DE C+ LGLNPK +RPDWMI+ 
Sbjct: 174  KF--------DSRITSEPT---RLVSAERIHEIFVKITDEACEKLGLNPKLSRPDWMIIT 222

Query: 248  VLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
            VLP+PPP +RPS          DDLT++L  IIR N+ LR+   +  P+ +I+E   LLQ
Sbjct: 223  VLPVPPPTIRPSVKFETLLRAEDDLTYKLGDIIRTNKILRKAIFSCLPSQLINEQINLLQ 282

Query: 298  FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
            +HI +Y +N +P   ++ Q+SGRPIKSI  RL+ KEGR+RGNLMGKRVDFSARTVITPDP
Sbjct: 283  YHIGSYMNNSVPSLAKSLQKSGRPIKSIKQRLQGKEGRLRGNLMGKRVDFSARTVITPDP 342

Query: 358  TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
             I +D+LGVP SIA+NLT+PE VT +NIE +K L+  GP+  PG   AKY+IR+D  R+D
Sbjct: 343  NIKLDELGVPLSIAMNLTFPEIVTSFNIEYMKFLLYNGPYKHPG---AKYLIRNDNNRID 399

Query: 418  LRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 477
            LRY+K  S+ +LE GY VERHL +GD VLFNRQPSLHKMS+MGH +K+M +STFRLNLS 
Sbjct: 400  LRYVKYLSNINLENGYCVERHLQNGDLVLFNRQPSLHKMSMMGHIVKVMKFSTFRLNLSA 459

Query: 478  TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
            TSPYNADFDGDEMN+H PQ+ E+++E+  L+MV  CIVSPQ N+P+MGIVQD+LLG   I
Sbjct: 460  TSPYNADFDGDEMNLHFPQNVESKSELKNLLMVSNCIVSPQGNKPIMGIVQDSLLGSMLI 519

Query: 538  TKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAW 597
            T++  F+ K   M  L   E +   +P P I KPR LWTGKQ+ + IIP  INL RT   
Sbjct: 520  TEKGNFLSKYEIMAYLNLIEGYSLNIPLPAIYKPRILWTGKQLISTIIP-CINLSRTCIS 578

Query: 598  HADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHT 657
            H +++K  +T+GDT V I +G+LLSG + K+T+G ++G LIHVIW+++GP A   F+ + 
Sbjct: 579  HPEHEKAYVTSGDTRVIIFQGQLLSGMIDKRTIGATSGGLIHVIWKDIGPSACSYFISNF 638

Query: 658  QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
            Q +VN WL  N FS+GIGD I      + ++  I  AK  VK  IK+   K       + 
Sbjct: 639  QIIVNNWLQLNGFSVGIGDCIPTKMVKKDVSLIIKTAKLFVKKSIKRLLSKKFNGFFNKD 698

Query: 718  MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
               + EN +N+VLN ARD AGSSAQK L+  NNLK M+ +GSKGS INISQ+ ACVGQQN
Sbjct: 699  SNYNLENHLNKVLNNARDMAGSSAQKCLTSYNNLKKMIFSGSKGSLINISQIVACVGQQN 758

Query: 778  VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
            VEGKRIPFGF  R+LPH+   ++ PE+RGFV NSY+ GL P EFFFH+MGGREGLIDTA+
Sbjct: 759  VEGKRIPFGFRKRSLPHYHYKNFEPETRGFVVNSYIEGLFPDEFFFHSMGGREGLIDTAI 818

Query: 838  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
            KTSETGYIQRRL K+MEDI+V+YD +VRN+  ++I FLYGED  D+V++E+Q +   KM 
Sbjct: 819  KTSETGYIQRRLSKSMEDIVVEYDFSVRNNQQEIISFLYGEDCFDAVYLENQKIFLGKMS 878

Query: 898  KSEFDKAFRFEMDEENWNPNYMLQEYIDD----LKTIKELRDVFDAEVQKLEADRYQLAT 953
              E +  ++        +P + L   ID     L        + + E  +L  DR  L  
Sbjct: 879  DIEMNMVYKVTQS----SPCFGLA--IDSSLLFLSNKSYNSKIANIEYNQLLKDREFLRK 932

Query: 954  EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER-LKVVPGE 1012
             +    D + PLPVNL R++  A   FK + +  S ++  E + ++  L+   L+++  +
Sbjct: 933  LMLDQNDINIPLPVNLDRIVSKASVLFK-NHKNSSLINFKETIRSLKFLRNYFLELINFK 991

Query: 1013 DPLSVEAQKNATL------FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
               + +   N  L         I +RS+ + K +  +  L + A  W++ EI     +SL
Sbjct: 992  ISFNQKKSDNKQLINRDNFLLAIYIRSSLSLKIIYTKFNLNQHALNWIVNEICLSIRKSL 1051

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
            + PGEM+G ++AQSIG+PATQMTLNTFH+AGVSAKNVTLGVPRL+EII++ K IK+PSL+
Sbjct: 1052 IQPGEMVGTISAQSIGQPATQMTLNTFHFAGVSAKNVTLGVPRLKEIIDIQKNIKSPSLT 1111

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
            +FL    ++   + K +Q ++E   L  ++   E+ YDPD   +I + +   VK+Y E+P
Sbjct: 1112 IFLHKKCSNDPRKVKKIQESIESVRLNRISNYFEIIYDPDFFFSISKCNRILVKNYMEIP 1171

Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKL-SMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            DEDI   + S W+L+++L  E  V+K L S   +     +        I +D+N+  +  
Sbjct: 1172 DEDINFLQASSWILKLKLLTEEFVEKGLFSNYIIETIKKKIKPIPFLIIASDENSGSIEF 1231

Query: 1246 RIRIM--------NDEAPKGELN--------------DESAEDDVFL-----KKIE---- 1274
             +R +        N E  +   +              ++   +++FL     KKI+    
Sbjct: 1232 LVRFIWPEFINNYNSEKIEKLFSRSNANTFFEYIKRANQKVSENLFLEPNYFKKIKHYFY 1291

Query: 1275 --------SNMLTEMALRGVNLLA---------------VMCHEDVDAR----------- 1300
                    S  LT++  R ++++                V+  E VD R           
Sbjct: 1292 NYNLKPYGSQKLTKLYPRRIDIIEPEPNQSGKLKNNFEFVLETEGVDLRFVMNYNGIDYS 1351

Query: 1301 RTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1360
            R T+N L+E ++VLGIEA R+ L+ ELR +ISFDGSYVNYRHL  L D +T+RG LM+I 
Sbjct: 1352 RCTTNDLLESLKVLGIEATRKILIQELRNLISFDGSYVNYRHLCTLVDLITFRGSLMSIN 1411

Query: 1361 RHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYL 1420
            RHGIN+ ++GP+ + +FEETVDI  ++AVF  +D LRGV+  IM G +  IGTG   L++
Sbjct: 1412 RHGINKCNSGPIAKSTFEETVDIFYESAVFGLNDNLRGVSAQIMTGMVPKIGTGKIDLFV 1471

Query: 1421 N 1421
            N
Sbjct: 1472 N 1472


>gi|83320456|gb|ABC02855.1| RNA polymerase II largest subunit, partial [Boothiomyces
            macroporosum]
          Length = 999

 Score = 1216 bits (3147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/1012 (59%), Positives = 750/1012 (74%), Gaps = 25/1012 (2%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+E AKP++H G++K +   + +VC+ CSKI  DE D +FK+A   +N   + +++    
Sbjct: 1    HIEFAKPVYHAGYLKKIKKTLETVCWFCSKIKTDESDFRFKRAQTFKNNAKKFQEVWSLS 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            K KT C    E ++ G  G+  +K N GGCG +QP   ++G+ + A +KA    ++D E+
Sbjct: 61   KGKTIC--AVEENLEGDQGK--IKHNHGGCGQRQPTFRLKGLTLSASFKAS--SDEDGEK 114

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS-- 259
            +     R   ++A + L VL +ISDE+C  +GL+P +ARP+WMIL VLP+PP  VRPS  
Sbjct: 115  IEA---RTIDISASKALEVLIKISDEECLKMGLSPIWARPEWMILTVLPVPPMAVRPSIS 171

Query: 260  --------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 311
                    DDLTH+L+ II+ N NL++ E +GAP+HII+E   LLQ+H+ TY +NE  G 
Sbjct: 172  MDGMGRGEDDLTHKLSDIIKANTNLKKHEVDGAPSHIIAELENLLQWHVCTYMNNETAGI 231

Query: 312  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 371
            P+A+Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP ++IDQ+GVP SIA
Sbjct: 232  PQASQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIA 291

Query: 372  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL 431
             NLT+PETVTPYN+E L ++V  GP+  PG   AK++IRD G+R+DLRY K+  D HL+ 
Sbjct: 292  RNLTFPETVTPYNLEMLSQMVRNGPNVHPG---AKHVIRDTGERIDLRYSKRGGDIHLQY 348

Query: 432  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 491
            GYKVERHL D D+++FNRQPSLHKMS+MGHR+KIMPYSTFRLNLSVTSPYNADFDGDEMN
Sbjct: 349  GYKVERHLLDDDYIIFNRQPSLHKMSMMGHRVKIMPYSTFRLNLSVTSPYNADFDGDEMN 408

Query: 492  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 551
            +HVPQS ETRAE+ +L MVPK IVSPQ N PVMGIVQDTL G RK TKRDTF+ +D+ MN
Sbjct: 409  LHVPQSHETRAEIQQLCMVPKQIVSPQKNAPVMGIVQDTLCGIRKFTKRDTFLHRDLLMN 468

Query: 552  ILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDT 611
            +LMW  ++DG +P P ILKP PLWT KQV ++IIP QIN+    + H D++   ++ GDT
Sbjct: 469  LLMWVPNWDGIIPMPAILKPIPLWTAKQVMSIIIP-QINMIGFHSTHPDDENTDISPGDT 527

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
             V IE GELL+G LCKKT+G+S   +IH    E GP+  + F   TQ +VNYWLLQN FS
Sbjct: 528  KVIIENGELLAGILCKKTVGSSASGVIHTSMNEHGPEITKDFFNGTQAVVNYWLLQNGFS 587

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDTIAD  TM+ INDTI+ AK  V  +I +AQ+  LE  PG T+  SFE+ VN  LN
Sbjct: 588  IGIGDTIADKNTMKAINDTIAHAKKEVNKIILKAQNNELECLPGMTIRGSFESLVNMELN 647

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARD AG SAQKSL E NN+K MV AGSKGSF+NISQMTACVGQQNVEGKRIPFGF DRT
Sbjct: 648  RARDNAGKSAQKSLKEFNNVKQMVVAGSKGSFLNISQMTACVGQQNVEGKRIPFGFKDRT 707

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHFTKDD+ PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVK
Sbjct: 708  LPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVK 767

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            A+ED  VKYDGTVRNSLGD+IQF YGEDGMD   +E Q L S+ M  + F K +R ++ E
Sbjct: 768  ALEDATVKYDGTVRNSLGDIIQFSYGEDGMDGARLEKQKLPSMTMSDAAFKKKYRIDISE 827

Query: 912  -ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEI-ATSGDSSWPLPVNL 969
             + + P    Q   +DL      +D+ D E  +L  DR  L   I   S    W LPVNL
Sbjct: 828  PQVFKPGSCEQSTYNDLINNPASQDILDREYNQLLKDRATLRNVIFKNSAIDKWTLPVNL 887

Query: 970  KRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNI 1029
            +RLIWNA  TF +D  +P+D++P+ V+++V++L E L VV G D LS+EAQKNATL F+I
Sbjct: 888  ERLIWNACHTFGIDRSKPTDLNPLHVIKSVNELMENLLVVRGNDQLSIEAQKNATLLFSI 947

Query: 1030 LLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            LLRST ASKR+++E RL+ +AF+WV+GEI++RF Q++V PGEM+G +AAQSI
Sbjct: 948  LLRSTLASKRLIEEFRLSTQAFDWVLGEIDARFNQAIVHPGEMVGTIAAQSI 999


>gi|120561223|gb|ABM26997.1| RNA polymerase II largest subunit, partial [Gigaspora gigantea]
          Length = 1039

 Score = 1214 bits (3142), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1049 (58%), Positives = 773/1049 (73%), Gaps = 54/1049 (5%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELAKP+FH+GF+  V  I+  +C NCSK+  D+ + KF QA KIR+PK RLK + D C
Sbjct: 1    HIELAKPVFHVGFLPKVKKILECICINCSKLKTDDSNAKFIQARKIRDPKRRLKAVWDIC 60

Query: 142  KNKTKCEGGDEIDV--PGQDGEEPL-------------------KKNKGGCGAQQPKLTI 180
            K+KT CE G+E D    G D E+ +                   KK  GGCG +QP +  
Sbjct: 61   KSKTTCERGEEADQDDKGSDYEDYVPSKQQQQQTTDEDLGLVRKKKPHGGCGHKQPTIRK 120

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EG+K+   YK+  K +D+Q Q     + ++ LT   V  +LK+IS  D + +GLN ++AR
Sbjct: 121  EGLKLYVNYKSN-KDSDEQSQ-----DTRKPLTPADVYQILKKISPPDLKDMGLNGEFAR 174

Query: 241  PDWMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            PDWMI+ +LP+PPPPV          R  DDLTH+LA I++ N+N++R E  G PAH+++
Sbjct: 175  PDWMIITILPVPPPPVRPSIQMDGTSRGEDDLTHKLADILKANQNVKRYEAEGHPAHVVN 234

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            EF  LLQFH ATY DNE+ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSAR
Sbjct: 235  EFEALLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSAR 294

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            TVIT DP I++DQ+GVP SIA NLT+PE VTP+NI+ L+ LVE GP   PG   AKY+IR
Sbjct: 295  TVITGDPNISVDQVGVPKSIAQNLTFPELVTPFNIDLLQGLVENGPSVHPG---AKYVIR 351

Query: 411  DDGQRLDLRYLK-KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
            D G+R+DL++    S    L+LG+KVERHLNDGD ++FNRQPSLHKMS+MGHR+++MPYS
Sbjct: 352  DTGERIDLKHTSGMSGGVRLQLGWKVERHLNDGDIIIFNRQPSLHKMSMMGHRVRVMPYS 411

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFRLNLSVT+PYNADFDGDEMNMHVPQS ET+AE+ E+ MVPK +VSPQSN+PVMGIVQD
Sbjct: 412  TFRLNLSVTTPYNADFDGDEMNMHVPQSVETKAEISEICMVPKQVVSPQSNKPVMGIVQD 471

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK TKRD F+ KD+ MNILMW  D+DG++P P ILKP PLWTGKQ+ ++IIPK I
Sbjct: 472  TLCAVRKFTKRDCFLTKDLVMNILMWVLDWDGRLPIPCILKPIPLWTGKQILSMIIPKGI 531

Query: 590  NL--FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
            N    R +  H +N+   ++ GDT V IE GELL G +CKKT+G +   L+HVI  E+GP
Sbjct: 532  NSDNLRHSG-HPENEHSDISPGDTKVLIEDGELLCGIVCKKTVGATHQGLVHVIMNEMGP 590

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            + A+ FL   Q +VN WLLQN FSIGIGDTIAD +TM+ I +TIS AK+ V  +I +AQ 
Sbjct: 591  EKAKDFLNGCQAVVNQWLLQNGFSIGIGDTIADDETMKNITNTISNAKSRVAEIIGEAQQ 650

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              LE  PG T+ E+FE+KVN+ LNTARD AG SA++SL E NN+K MV AGSKGSFINIS
Sbjct: 651  DKLECAPGMTIRETFEHKVNKELNTARDAAGKSAEQSLKEENNVKQMVIAGSKGSFINIS 710

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            QMTACVGQQNVEGKRIPFGF  RTLPHFTKDD+ PESRGFVEN YLRGLTPQEFFFHAMG
Sbjct: 711  QMTACVGQQNVEGKRIPFGFKFRTLPHFTKDDHSPESRGFVENCYLRGLTPQEFFFHAMG 770

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRLVKA+ED+MVKYDGTVRNSLGD++QF YGEDGMD+ ++E
Sbjct: 771  GREGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDIVQFCYGEDGMDACFVE 830

Query: 888  SQTLDSLKMKKSEFDKAFRFEM--DEENWNPNYMLQEYIDDL-----KTIKE-LRDVFDA 939
             QT D+L M  +EFD  +  E+  DE+N       Q+  D +     KT +E +R+    
Sbjct: 831  PQTFDTLPMNNAEFDNKYLIELKDDEKNKEKEAGQQDDTDLVQPKKPKTQQEIIREKIVE 890

Query: 940  EVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRR--PSDMHPMEVVE 997
            E  +L+ DR  L  +I T+GD+ WPLPVN+KRLI NAQ+ F + P R   +D+  ++V+ 
Sbjct: 891  EYVQLKRDREMLQRDIFTNGDNKWPLPVNIKRLIKNAQQKFNIRPSRWTTTDLQYIDVIN 950

Query: 998  AVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGE 1057
            +V+++  RL VV G D +S EAQ NAT  F ILLRS  AS+RV++E  L  +A +WV+GE
Sbjct: 951  SVEEVMSRLVVVKGNDQISHEAQTNATTLFKILLRSWLASRRVIEEFHLNSQALKWVLGE 1010

Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPAT 1086
            +ESRF +SLV+PGEM+G VAAQSIGEPAT
Sbjct: 1011 VESRFRKSLVSPGEMVGTVAAQSIGEPAT 1039


>gi|336041421|gb|AEH95288.1| RNA polymerase II largest subunit [Malawimonas californiana]
          Length = 1014

 Score = 1210 bits (3131), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/1038 (58%), Positives = 759/1038 (73%), Gaps = 62/1038 (5%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+EL+KP+FH+GF+KT++ +MR +CF CS++L D           +R     +   L AC
Sbjct: 1    HIELSKPVFHMGFVKTIVKVMRCLCFFCSRLLTD----------TVRLCAASVPLCLAAC 50

Query: 142  KNKTKCEGGDEIDVPGQD-------GEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRK 194
            + +  CE GD++  PG +       G    K N GGCG  QPK+     KM+AE+KA   
Sbjct: 51   RGRHVCESGDDMK-PGAENADHTGAGSAKPKVNHGGCGNVQPKIMFSEWKMVAEFKA--- 106

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
              D+ +Q      RK  LT E+V  +LK +SDED + +G NP  ARP+WM+  VLP+PPP
Sbjct: 107  --DEADQ----AARKIVLTPEKVYNILKNVSDEDSKAMGFNPVLARPEWMLTTVLPVPPP 160

Query: 255  PVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
             VRPS          DDLT++L+ I++ N NL+ Q   GA  HII EF QLLQ+HIAT  
Sbjct: 161  AVRPSIVMDSARAAEDDLTYKLSDIVKANNNLKLQLERGAAPHIIQEFTQLLQYHIATML 220

Query: 305  DNELPGQPRATQR-SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
            DNE+PG P ++QR SGRP+KSI  RL+ K GRIRGNLMGKRVDFSARTVITPDP +++++
Sbjct: 221  DNEMPGMPVSSQRGSGRPLKSIRQRLRGKHGRIRGNLMGKRVDFSARTVITPDPNLSVNE 280

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP +IALNLTYPE VTPYNI R+++L+E GP   PG   AKYI+RDDG R DLRY KK
Sbjct: 281  VGVPRTIALNLTYPEVVTPYNIARMRQLIENGPMKHPG---AKYILRDDGTRTDLRYAKK 337

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
             S+ HL+ GYKVERH+ DGD V+FNRQPSLHKMS+MGHRI+I+P+STFRLNLSVT+PYNA
Sbjct: 338  PSELHLDYGYKVERHVQDGDVVIFNRQPSLHKMSMMGHRIRILPWSTFRLNLSVTTPYNA 397

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMNMHV QS ETRAE+ E+MMVP+ IVSPQ+N+PVMGIVQD+LLG +  TKRDTF
Sbjct: 398  DFDGDEMNMHVAQSPETRAEIEEIMMVPRQIVSPQANKPVMGIVQDSLLGTKLFTKRDTF 457

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            IE+D+ MN+LMW   F+GKVP+P +LKP+ LWTGKQ+F+++IP  +NL R +A   + + 
Sbjct: 458  IERDLVMNVLMWLSTFEGKVPKPAMLKPKVLWTGKQIFSMLIPP-VNLLRKSAQAPEREL 516

Query: 604  GI-LTAGDT----LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQ 658
                T  DT    LV IE GE++SG +CK+T+G+S+GSL+HV+W E G +A R FL   Q
Sbjct: 517  NEEFTYTDTRVCSLVCIENGEVISGIICKQTVGSSSGSLVHVVWNEHGHEATRNFLDSVQ 576

Query: 659  WLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTM 718
             +VN WLL   FS+GIGDTIAD +TM+ I  TI+ AK  V +LIKQAQ+ +LEP+PGRT+
Sbjct: 577  AVVNQWLLSRGFSVGIGDTIADKETMQQITRTIAAAKAQVASLIKQAQNHNLEPQPGRTL 636

Query: 719  MESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNV 778
            ME+FE+KVN  LNTARD+AG SA++SL  SNN+K MVTAGSKGSFINI+QM ACVGQQNV
Sbjct: 637  METFESKVNSALNTARDKAGKSAEQSLRSSNNVKEMVTAGSKGSFINIAQMIACVGQQNV 696

Query: 779  EGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 838
            EGKRIP+GF +RTLPHF   DY PE+RGFVENSYLRGL PQEFFFHAMGGREGLIDTAVK
Sbjct: 697  EGKRIPYGFRNRTLPHFVAADYSPEARGFVENSYLRGLNPQEFFFHAMGGREGLIDTAVK 756

Query: 839  TSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
            TSETGYIQRRL+KAMED+MV+YDGTVRNSLGDVIQFLYGEDG D   IE+Q LD++ M  
Sbjct: 757  TSETGYIQRRLIKAMEDVMVRYDGTVRNSLGDVIQFLYGEDGFDGTAIETQFLDTMFMND 816

Query: 899  SEFDKAFRFEMDEENWNP-NYMLQEYIDDLKTIKELRDV---------FDAEVQKLEADR 948
               +   R    +   +P NY+L E +DD+++  E  DV          D E Q+L +DR
Sbjct: 817  MYVEIDVRQTFAQTRDSPENYLLPEVLDDIRSNAEYMDVRWWCATRWALDREYQRLLSDR 876

Query: 949  YQLATEIATS----GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPM-EVVEAVDKLQ 1003
              L  ++         + WPLPVNLKR+IWNA K F      PSD+HP+ +V+ AV++L 
Sbjct: 877  EALRKQVFAHSLVPNSNKWPLPVNLKRIIWNASKRFPPRMDGPSDLHPVKDVIAAVEELA 936

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
             RL VVPG DP++ EAQ+N+TL F I LRST ASKRV+ E +LT E+F W++GEI++RF 
Sbjct: 937  GRLTVVPGTDPIAREAQENSTLLFLIQLRSTLASKRVIHEFKLTSESFPWLLGEIQARFK 996

Query: 1064 QSLVAPGEMIGCVAAQSI 1081
            Q L  PGEM+G +AAQSI
Sbjct: 997  QGLAHPGEMVGPIAAQSI 1014


>gi|83320424|gb|ABC02839.1| RNA polymerase II largest subunit, partial [Polychytrium aggregatum]
          Length = 1016

 Score = 1209 bits (3128), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 594/1030 (57%), Positives = 748/1030 (72%), Gaps = 44/1030 (4%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELAKP+FH GF+K +  ++  VCF C K+  D+ + KFK+A  I++   R +++ + C
Sbjct: 1    HIELAKPVFHCGFIKKIKKVLECVCFYCGKLKVDDSNEKFKKARLIKDRNRRFQEVWELC 60

Query: 142  KNKTKCEGGD-------------EIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAE 188
            + KT CE GD                V  +   +P  K  GGCG++QP       K+  +
Sbjct: 61   RAKTVCEVGDLNEDEHGGDDGHRGDGVSQRADSKPKGKAHGGCGSKQPAFR----KLALD 116

Query: 189  YKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV 248
                    DD +Q  E   +K  LTAE+V+ + K IS+ED   +GL+  +ARP+WM + V
Sbjct: 117  LSYTVVLRDDNDQTKET--KKVDLTAEKVVSIFKSISEEDINNMGLSQDWARPEWMCITV 174

Query: 249  LPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
            L +PP PVRP+           DDLT+++A I++ N  LR+ E  G+PAH+I+EF +LLQ
Sbjct: 175  LAVPPMPVRPAVNMNNGGGVSQDDLTYKIADIVKTNNLLRKHEAEGSPAHVINEFEKLLQ 234

Query: 298  FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
            +H+ATY +N++ G P+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP
Sbjct: 235  YHVATYMNNDISGIPKAQQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDP 294

Query: 358  TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
             ++IDQ+GVP SIA NLT+PE VTPYNI RL++ V+ GP   PG   AKY+IRD+G+R+D
Sbjct: 295  NLSIDQVGVPRSIARNLTFPENVTPYNIARLQKYVQNGPMEHPG---AKYVIRDNGERID 351

Query: 418  LRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 477
            LRY K   D HL+ GYKVERHL D D V+FNRQPSLHKMS+MGHR+K+MPYSTFRLNLSV
Sbjct: 352  LRYSKVGRDIHLQPGYKVERHLMDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSV 411

Query: 478  TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
            TSPYNADFDGDEMN+HVPQS+ETRAE+ EL MVPK IV+PQ N P MGIVQDTL   RK 
Sbjct: 412  TSPYNADFDGDEMNLHVPQSYETRAEIQELCMVPKQIVTPQKNGPCMGIVQDTLCAIRKF 471

Query: 538  TKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAW 597
            T+RD F+ KD+ MN+LMW  D+DG VP P I+KP PLWTGKQ+ +LIIP+ IN+      
Sbjct: 472  TRRDCFLSKDMVMNLLMWVPDWDGTVPTPCIIKPIPLWTGKQMMSLIIPR-INMVGYHMA 530

Query: 598  HADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHT 657
            H D++K  ++ GDT V IE GELL+G LCKKT+G+S   +IH+ + E GP+AA+ F    
Sbjct: 531  HPDDEKSDISPGDTKVYIEDGELLTGILCKKTVGSSQNGIIHITFNEHGPEAAKGFFNSC 590

Query: 658  QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
            Q +VNYWLL N FSIGIGDTIAD +TME IN +I  AK  V  +I +AQ   L   PG T
Sbjct: 591  QLIVNYWLLHNGFSIGIGDTIADKQTMEKINQSIQSAKAEVNKIIAKAQRDELAVLPGMT 650

Query: 718  MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
            +  SFE  VN+ LN ARD AG SA++SL E NN+K MVTAGSKGSFINISQMT CVGQQN
Sbjct: 651  IRLSFEALVNKELNRARDMAGKSAERSLKEQNNVKQMVTAGSKGSFINISQMTGCVGQQN 710

Query: 778  VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
            VEGKRIPFGF DR+LPHFTKDD+ PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV
Sbjct: 711  VEGKRIPFGFKDRSLPHFTKDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 770

Query: 838  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
            KT+ETGYIQRRLVKAMED+MV+YDGT+R+SLG VIQF YGEDGMD   +E Q L+SL M 
Sbjct: 771  KTAETGYIQRRLVKAMEDVMVRYDGTIRDSLGTVIQFCYGEDGMDGAKVERQNLESLAMS 830

Query: 898  KSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKEL------RDVFDAEVQKLEADRYQL 951
             ++F+KA+R ++        Y L+  + D +T + L      ++  D E ++L  DR  L
Sbjct: 831  DAKFEKAYRVDLT----GGQYGLKPGVLDFRTQENLLSDGLTQNRLDQEFEQLRKDRETL 886

Query: 952  ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG 1011
               I   G SSWPLPVNLKRLIWNAQ  F+V PR+P+D+HP+ + E+V++L ++L VV G
Sbjct: 887  RWTIFKDGSSSWPLPVNLKRLIWNAQNQFEVGPRKPTDLHPLHITESVEQLLDKLVVVRG 946

Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
             DPLSVEAQKNATL F IL+RST A++RVL+E  L  ++F+ +IGEIE RF Q++  PGE
Sbjct: 947  NDPLSVEAQKNATLLFQILVRSTLATRRVLEEFHLNSKSFQHLIGEIEMRFNQAIAHPGE 1006

Query: 1072 MIGCVAAQSI 1081
            M+G +AAQSI
Sbjct: 1007 MVGTIAAQSI 1016


>gi|167527458|ref|XP_001748061.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773479|gb|EDQ87118.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1307

 Score = 1186 bits (3069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 650/1314 (49%), Positives = 848/1314 (64%), Gaps = 132/1314 (10%)

Query: 507  LMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQP 566
            +MMV K I++PQSNRPVMGI+QDTL   R++T RD FIE++  M++LMW  ++DGK+P P
Sbjct: 1    MMMVHKNILTPQSNRPVMGIIQDTLTAARRMTFRDCFIEREQLMHLLMWMPNWDGKIPVP 60

Query: 567  TILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKGI--LTAGDTLVRIEKGELLSG 623
             I+ P+ LWTGKQ+ ++IIP++INL    + H D  D+    LT  DT V I KG L+SG
Sbjct: 61   AIVAPKELWTGKQLVSMIIPRRINLEGKHSTHEDKVDRATPYLTVHDTKVIISKGVLISG 120

Query: 624  TLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKT 683
             LCK  LG   G +IH I  E G + AR+F G+ Q ++N WLL +  SIGIGD +AD  T
Sbjct: 121  ILCKSMLGAKGGGVIHAITVEHGLEEARQFYGNIQTVINNWLLIHGHSIGIGDAVADQDT 180

Query: 684  METINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQK 743
             + I +   +A  +V  LI +AQ   ++P+PG T+ E+FE +VN VLN   ++AG +AQ 
Sbjct: 181  NKKIEELTQEATRSVDELITKAQADDIKPKPGNTVRETFEVEVNTVLNDMVNKAGKAAQN 240

Query: 744  SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPE 803
            SLS  NN KAM TAGSKG  INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGP+
Sbjct: 241  SLSIHNNFKAMSTAGSKGGPINISQIIACVGQQNVEGKRIPFGFKYRTLPHFVKDDYGPD 300

Query: 804  SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGT 863
            SRGFV NSY +GL+ QE FFHAMGGREGLIDTAVKT+ETGYIQRRLVK+ME + + YDG+
Sbjct: 301  SRGFVFNSYFKGLSAQEMFFHAMGGREGLIDTAVKTAETGYIQRRLVKSMEGLRLNYDGS 360

Query: 864  VRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEY 923
            +RNS GD+IQ  YGEDGMD   +E Q L +L      F++ F    ++      Y++   
Sbjct: 361  IRNSNGDLIQLCYGEDGMDGACLEKQGLPTLTPSDQGFERDFCNTGNKLASLRQYLVGNI 420

Query: 924  IDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVD 983
            +DD+    E+    + E Q+L+ DR Q    +   G++   LPV L+RLI +AQK F +D
Sbjct: 421  VDDINADDEMLQELEDEWQRLQDDR-QFLRSVFPKGEADVVLPVQLRRLIISAQKEFNID 479

Query: 984  PRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKE 1043
            PRRP+D+ P  V +A+    +RL V+PG+DPLS  AQ+NATL FN  LRS  +S++ +  
Sbjct: 480  PRRPTDLSPAHVAQAIRTFTDRLVVIPGDDPLSKVAQRNATLLFNCNLRSVLSSRQCIVR 539

Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
            HRL  +AF+W++GE+E RF+Q+   PGEM+G +AAQS+GEPATQMTLNTFH AGVSAKNV
Sbjct: 540  HRLNTKAFDWILGEVEKRFMQAQAQPGEMVGALAAQSLGEPATQMTLNTFHLAGVSAKNV 599

Query: 1104 TLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWY 1163
            TLGVPRL+EIINV+KK KTPS+ +F+       +  A  V  ++E++TL+++  ++ ++Y
Sbjct: 600  TLGVPRLKEIINVSKKPKTPSMVLFIGEDKYQDRNTAMKVLFSIEHSTLKTIIHSSSIYY 659

Query: 1164 DPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKI 1223
            DPD M ++I ED EF+++ Y++ D D+   K   W+LR EL+R  +  +++    VA+ I
Sbjct: 660  DPDEMNSVIPEDREFLEN-YDIGDFDM--NKWHRWVLRWELSRREINTRRILPENVAKLI 716

Query: 1224 NQEFD-------DDLTCIFNDDNA-DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIES 1275
             +          D +   F   N  D  ++RIR+  D++      D+S   D +L+ +E 
Sbjct: 717  KRAMGAVQDTERDTVMVHFQQGNIEDHTVMRIRLPRDKSEA----DDSLGPDAYLRLLED 772

Query: 1276 NMLTEMALRGV------------------------------------------NLLAVMC 1293
             +L  + L+G+                                          ++ +V  
Sbjct: 773  RILHSITLQGIPDITRGYLVTGDSKQPGKQRIFINEEGEFKPQDQFLVETDGSSIQSVFA 832

Query: 1294 HEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYR 1353
               VD  R+TSN ++EI    GIE  R+A+  E+  VISF GSYVN RHL++LCD MT +
Sbjct: 833  QRYVDQERSTSNDIVEIFSTFGIEGARKAIEAEMYNVISFGGSYVNARHLSLLCDIMTTK 892

Query: 1354 GHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGT 1413
            G+LMAITRHG+NR +TG +M+ SFEETVDILL+AA   E+DYL+GV+ENIMLGQ+ P GT
Sbjct: 893  GYLMAITRHGVNRQNTGVLMKASFEETVDILLEAAAHGETDYLKGVSENIMLGQVIPGGT 952

Query: 1414 GDCSLYLNDEMLKNAIELQ--LPSYME--GLEFGMTPARSPVSGTPYHDGMMSPGYLFSP 1469
            G   L L+ + L++A+ ++  L       G   G        + TP+  G M+P    SP
Sbjct: 953  GCFDLLLDQDRLQHAVPVEPGLGGLFAKGGDANGAATPWGEGNATPFGMGGMTPQNASSP 1012

Query: 1470 NL--------RLSPVTDAQFSPYV----GGMAFSPTS--------SPGYSPSSPGYSPSS 1509
             L          SPV    FSP      GG+A SP          SPG   +SP Y PSS
Sbjct: 1013 YLGAGQTPIGGFSPVVAGAFSPGGMLSPGGIAQSPGGAMSPGGAMSPGVVSASPFYDPSS 1072

Query: 1510 P-GYSPTSPGYSPTSPGYSPTSPGYSPTSPT-YSPSSPGYSPTSPAYSPTSP-------- 1559
            P GYSPTSP YSPTSPG SPTSPG+SP SP  ++P+SP YSPTSP+YSPTSP        
Sbjct: 1073 PAGYSPTSPSYSPTSPGMSPTSPGFSPASPAGFTPTSPHYSPTSPSYSPTSPNVGGAQSP 1132

Query: 1560 --------------SYSPTSPSYSPTSPSYSPTSPSY-SPTSP----------------- 1587
                          +Y+  SP+YSPTSPSYSPTSP+  SPTSP                 
Sbjct: 1133 SYSPTSPSYSPSSPAYNAQSPAYSPTSPSYSPTSPNVKSPTSPGYSPTSPGYSPSSPSYS 1192

Query: 1588 ----SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
                +YSPTSPSYSPTSP+YSPTSP+YSPTSP YSPTSP+YSPTSP+YSPTSPSYSPTSP
Sbjct: 1193 PTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSP 1252

Query: 1644 SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS-PTSPSYSPTSPTYSPTSPSYNP 1696
            +YSPTSPSYSPTSP+YSPTSP+YSPT+ G S PTSP YSPTSP YSPTSP Y+P
Sbjct: 1253 NYSPTSPSYSPTSPNYSPTSPSYSPTANGTSGPTSPGYSPTSPGYSPTSPGYSP 1306



 Score =  196 bits (498), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/155 (81%), Positives = 140/155 (90%), Gaps = 3/155 (1%)

Query: 1489 AFSPTSSPGYSPSSPGY-SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
            A+SPTS P YSP+SP   SP+SPGYSPTSPGYSP+SP YSPTSP YSPTSP+YSP+SP Y
Sbjct: 1154 AYSPTS-PSYSPTSPNVKSPTSPGYSPTSPGYSPSSPSYSPTSPNYSPTSPSYSPTSPNY 1212

Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
            SPTSP+YSPTSP+YSPTSPSYSPTSP+YSPTSPSYSPTSP+YSPTSPSYSPTSP+YSPTS
Sbjct: 1213 SPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTSPSYSPTSPNYSPTS 1272

Query: 1608 PAYSPTSPAYS-PTSPAYSPTSPSYSPTSPSYSPT 1641
            P+YSPT+   S PTSP YSPTSP YSPTSP YSP+
Sbjct: 1273 PSYSPTANGTSGPTSPGYSPTSPGYSPTSPGYSPS 1307



 Score = 77.4 bits (189), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 79/152 (51%), Gaps = 55/152 (36%)

Query: 1656 SPSYSPTSPAYSPTSP-GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
            SP     SP Y P+SP GYSPTSPSYSPTSP                      SP+SP  
Sbjct: 1058 SPGVVSASPFYDPSSPAGYSPTSPSYSPTSP--------------------GMSPTSPGF 1097

Query: 1715 SPASP--YSPTSPNYSPTSSSYSPTSP----------------------SYSPSSPTYSP 1750
            SPASP  ++PTSP+YSPTS SYSPTSP                      +Y+  SP YSP
Sbjct: 1098 SPASPAGFTPTSPHYSPTSPSYSPTSPNVGGAQSPSYSPTSPSYSPSSPAYNAQSPAYSP 1157

Query: 1751 SSPYNAGGGNPDYSPSSPQY-SPSA-GYSPSA 1780
            +SP         YSP+SP   SP++ GYSP++
Sbjct: 1158 TSP--------SYSPTSPNVKSPTSPGYSPTS 1181



 Score = 71.6 bits (174), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/128 (42%), Positives = 71/128 (55%), Gaps = 25/128 (19%)

Query: 1670 SPGYSPTSPSYSPTSPT-YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTSPNY 1727
            SPG    SP Y P+SP  YSPTSPSY             SP+SP +SP SP +SP SP  
Sbjct: 1058 SPGVVSASPFYDPSSPAGYSPTSPSY-------------SPTSPGMSPTSPGFSPASP-- 1102

Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPGYSP 1785
                + ++PTSP YSP+SP+YSP+SP N GG        +      +   Y+  +P YSP
Sbjct: 1103 ----AGFTPTSPHYSPTSPSYSPTSP-NVGGAQSPSYSPTSPSYSPSSPAYNAQSPAYSP 1157

Query: 1786 SSTSQYTP 1793
            +S S Y+P
Sbjct: 1158 TSPS-YSP 1164



 Score = 67.8 bits (164), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/158 (38%), Positives = 82/158 (51%), Gaps = 49/158 (31%)

Query: 1672 GYSPT-SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSP----SSPRLSPASP--YSPTS 1724
            G+SP  + ++SP     SP   + +P  A  SP  A SP    +SP   P+SP  YSPTS
Sbjct: 1023 GFSPVVAGAFSPGG-MLSPGGIAQSPGGA-MSPGGAMSPGVVSASPFYDPSSPAGYSPTS 1080

Query: 1725 PNYSPTS---------------SSYSPTSPSYSPSSPTYSPSSPYNAGGG---------- 1759
            P+YSPTS               + ++PTSP YSP+SP+YSP+SP N GG           
Sbjct: 1081 PSYSPTSPGMSPTSPGFSPASPAGFTPTSPHYSPTSPSYSPTSP-NVGGAQSPSYSPTSP 1139

Query: 1760 ------------NPDYSPSSPQYSPSA--GYSPSAPGY 1783
                        +P YSP+SP YSP++    SP++PGY
Sbjct: 1140 SYSPSSPAYNAQSPAYSPTSPSYSPTSPNVKSPTSPGY 1177



 Score = 45.4 bits (106), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 17/96 (17%)

Query: 1698 SAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAG 1757
            +  +SP    SP     SP    SP               SP    +SP Y PSSP    
Sbjct: 1029 AGAFSPGGMLSPGGIAQSPGGAMSPGGA-----------MSPGVVSASPFYDPSSPAGYS 1077

Query: 1758 GGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
              +P YSP+SP      G SP++PG+SP+S + +TP
Sbjct: 1078 PTSPSYSPTSP------GMSPTSPGFSPASPAGFTP 1107


>gi|120561205|gb|ABM26988.1| RNA polymerase II largest subunit, partial [Neolecta vitellina]
          Length = 997

 Score = 1186 bits (3068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/1018 (57%), Positives = 751/1018 (73%), Gaps = 34/1018 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELAKP+FH GF+  V+ I++SVCFNC K+ AD++D KF +A++ R+PK R+  + +AC
Sbjct: 1    HIELAKPVFHSGFLTKVIKILQSVCFNCGKLKADQNDPKFIEAMRYRDPKARMNAMWNAC 60

Query: 142  KNKTKCEGGDEI-DVP-GQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            K K+ C+ G    D P G D    L  + GGCG  QP +  +G K+   +K   K   DQ
Sbjct: 61   KGKSVCDSGPSTEDAPEGAD----LGISHGGCGNPQPTIRKDGFKLWGTWK---KSKTDQ 113

Query: 200  EQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS 259
            +  PE    K+ +TA  VL + + ISDED Q LGL+ +YARP+WMI+ VL +PPPPVRPS
Sbjct: 114  DSQPE----KRAITASEVLRIFQLISDEDLQKLGLSGEYARPEWMIITVLGVPPPPVRPS 169

Query: 260  ----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELP 309
                      DDLT++LA II+ N N+RR E  GAPAHI++EF  LLQFH+ATY DN +P
Sbjct: 170  ISVDGSARSEDDLTYKLAEIIKANSNVRRTESEGAPAHIVTEFESLLQFHVATYMDNNIP 229

Query: 310  GQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWS 369
            GQP+A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP S
Sbjct: 230  GQPQAIQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 289

Query: 370  IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHL 429
            IA  LTYPETVT YNI +L+ELV  GP+  PG   AKYIIRD G+R+DLRY K++ +  L
Sbjct: 290  IAKTLTYPETVTSYNIHKLQELVRNGPNEHPG---AKYIIRDTGERIDLRYHKRAGEIPL 346

Query: 430  ELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDE 489
            + G++VERH+ DGD ++FNRQPSLHKMS+MGHRI++MPYSTFRLNLSVTSPYNADFDGDE
Sbjct: 347  QYGWRVERHIVDGDVIIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDE 406

Query: 490  MNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVF 549
            MN+HVPQS ETRAE+ E+ MVP+ IVSPQ N+PVMGIVQDTL   RK TKRD+F+ +D+ 
Sbjct: 407  MNLHVPQSEETRAEISEICMVPRQIVSPQGNKPVMGIVQDTLCAIRKFTKRDSFLAQDMV 466

Query: 550  MNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAG 609
            MNILMW  ++DG VP P I+KP+PLW+GKQ+ +++IP+ IN+ R      D D+      
Sbjct: 467  MNILMWVPEWDGTVPMPAIIKPKPLWSGKQILSMVIPRGINITRN-----DEDQTHNPPD 521

Query: 610  DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
            D  ++IE GE++ G + KKT+G++ G LIH+I +E GP+  + F    Q +VNYW L N 
Sbjct: 522  DRGMKIENGEIIYGVVDKKTVGSTPGGLIHIIMQEKGPEVCKGFFNGVQLVVNYWFLHNG 581

Query: 670  FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
            FSIGIGDTIADA  M+ I + I++A+  V  + ++AQ+ +LEP PG T+ E+FE++V Q 
Sbjct: 582  FSIGIGDTIADAHIMDIIQEKITEARAKVIEVTRKAQNNTLEPSPGMTLRETFESQVRQA 641

Query: 730  LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
            LN ARDEAG SA+K L ESNN+K MV+AGSKGSFINISQM+ACVGQQ VEG+RI FGF  
Sbjct: 642  LNNARDEAGRSAEKGLKESNNVKQMVSAGSKGSFINISQMSACVGQQAVEGQRIAFGFKF 701

Query: 790  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 849
            RTLPHF +DDY PESRGFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRL
Sbjct: 702  RTLPHFVRDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRL 761

Query: 850  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE- 908
            VKA+ED+MVKYDGTVRNSLGD++Q  YGEDG+D   +E Q L++L +    F+  +R + 
Sbjct: 762  VKALEDVMVKYDGTVRNSLGDIVQLAYGEDGLDGAKVEHQFLETLTLSDRNFEDRYRVDL 821

Query: 909  MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
            MD     P  +L E  +D+   +E+++  D E  +L  DR +L   I   GD+   LPVN
Sbjct: 822  MDPTRTIPANLL-EVGNDIDGDEEMQNYLDEEWMQLVEDRKKL-RHIFPDGDNRRALPVN 879

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            ++R+I NAQ+ F +D R+PS++ P +++E V +L  +L V  G D L+ EAQ++AT    
Sbjct: 880  IQRVIQNAQQIFHIDRRKPSNLTPKDIIEGVRQLTSKLIVFRGTDKLTTEAQQDATSLSQ 939

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1086
            I +RS  A+KRVLKE+   + AFEW++GEIESRF  S+  PGEM G +AAQSIGEPAT
Sbjct: 940  IHIRSRLATKRVLKEYHFNKIAFEWLLGEIESRFASSVAYPGEMCGTLAAQSIGEPAT 997


>gi|358030890|dbj|BAL15354.1| RNA polymerase II largest subunit, partial [Basidiobolus haptosporus]
          Length = 976

 Score = 1185 bits (3065), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/988 (59%), Positives = 740/988 (74%), Gaps = 33/988 (3%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELAKP++H+GF+  V  I++ VCF CSK+ ADE + K+ +A +I++ K RL
Sbjct: 1    ECPGHFGHIELAKPVYHVGFIVKVKKILQCVCFFCSKLKADESNPKYSRARQIKDRKARL 60

Query: 135  KKILDACKNKTKCEGGDEIDVPG--------QDGEEPLKKN-KGGCGAQQPKLTIEGMKM 185
            K + D CK+K  C+  +E D P         + GE   ++N  GGCG +QP +   G+++
Sbjct: 61   KAVWDVCKSKMICDNEEETD-PATTNQEEVEESGEHTFRRNGHGGCGHRQPVIRKVGLRL 119

Query: 186  IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
            IAE+K     N  +  +PE    KQ LT  +V  +LK ISDED + +GL+ ++ARPDWMI
Sbjct: 120  IAEFK-----NGIKGAMPES---KQPLTPSQVHQILKNISDEDLEAMGLSTEFARPDWMI 171

Query: 246  LQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
            + VLP+PPP V          R  DDLTH+LA I++ N N++R E  GAPAH+I EF QL
Sbjct: 172  ITVLPVPPPSVRPSIQIDGSSRGEDDLTHKLADILKANVNVKRCEAEGAPAHVIDEFEQL 231

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQFH+ATY DN++ GQP+A Q+SG+P+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT 
Sbjct: 232  LQFHVATYMDNDIVGQPQALQKSGKPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 291

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP ++ID++GVP SIA NLT PE V PYNI RL+ELV  GP+  PG   AKYIIRD G+R
Sbjct: 292  DPNLSIDEVGVPRSIARNLTVPEMVAPYNIGRLQELVRNGPNQHPG---AKYIIRDTGER 348

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
            +DLRY +++ D  L+ GYKVERHL++GD V+FNRQPSLHKMS+MGH++++MPYSTFRLNL
Sbjct: 349  IDLRYHQRAGDIPLQYGYKVERHLDNGDVVIFNRQPSLHKMSMMGHKVRVMPYSTFRLNL 408

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            SVTSPYNADFDGDEMNMHVPQS ET+ E+ E+ MVPK I+SPQSN+PVMGIVQDTL G R
Sbjct: 409  SVTSPYNADFDGDEMNMHVPQSEETKVEIQEICMVPKQIISPQSNKPVMGIVQDTLCGVR 468

Query: 536  KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
            K T RD F++K + MNILM  +D++G +  P ILKP PLWTGKQ+ +++IPK IN     
Sbjct: 469  KFTNRDCFMDKALVMNILMLVDDWNGVIXTPAILKPLPLWTGKQLLSMVIPKGINCITYH 528

Query: 596  AWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLG 655
            + H D++K  ++ GDT V +E GEL+SG +CKKT+G S G  +H I  E GP+ A+KFL 
Sbjct: 529  SAHPDDEKSDISPGDTKVVVEDGELISGIVCKKTVGASNGGWVHTIMNEHGPEIAKKFLC 588

Query: 656  HTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPG 715
             TQ +VNYWLLQN FSIGIGDTIAD KT E I +TI  AK  V  +I  AQ   LE  PG
Sbjct: 589  GTQAVVNYWLLQNGFSIGIGDTIADEKTAEHITETIDSAKQRVSEIILAAQQDKLECAPG 648

Query: 716  RTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQ 775
             T+ E+FE+KV++ LN ARD +G SA++SL E NN+K MV +GSKGSF+NISQM+ACVGQ
Sbjct: 649  MTIRETFESKVSRELNRARDHSGQSAERSLKEENNVKQMVVSGSKGSFVNISQMSACVGQ 708

Query: 776  QNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 835
            Q+VEGKRIPFGF  RTLPHFTKDDYGPES+GFVENSYLR LTPQEFFFHAMGGREGLIDT
Sbjct: 709  QDVEGKRIPFGFKFRTLPHFTKDDYGPESKGFVENSYLRRLTPQEFFFHAMGGREGLIDT 768

Query: 836  AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLK 895
            AVKT+ETGYIQRRLVKA+ED+MVKYDGTVRNSLG++IQF YGEDGMD  ++E QTLDS+ 
Sbjct: 769  AVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGNIIQFCYGEDGMDGCFVEKQTLDSIX 828

Query: 896  MKKSEFDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLAT 953
            M   +F+K ++ + MD E+ + P  +    + D++     + + D E ++L  DR  L  
Sbjct: 829  MSNDKFEKIYKVDVMDKEKGFKPGVLEFNILKDVEGNDSTQMMLDEEYRQLCEDRRVLRE 888

Query: 954  EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
             I+TSGD SWPLP NLKRLIWNAQ  F +D R+PS++HP++++E V  L +RL VV G D
Sbjct: 889  FISTSGDQSWPLPGNLKRLIWNAQNIFHIDKRKPSNLHPLQIIEGVKLLVDRLVVVRGTD 948

Query: 1014 PLSVEAQKNATLFFNILLRSTFASKRVL 1041
             LS EAQ NATL +  LLRST ++KRVL
Sbjct: 949  KLSHEAQLNATLLYQCLLRSTLSTKRVL 976


>gi|225561523|gb|EEH09803.1| RNA polymerase II largest subunit [Ajellomyces capsulatus G186AR]
          Length = 1234

 Score = 1182 bits (3057), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 666/1285 (51%), Positives = 837/1285 (65%), Gaps = 139/1285 (10%)

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L MVP  IVSPQ N P+MG
Sbjct: 1    MPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEEARAELSQLCMVPLQIVSPQRNGPLMG 60

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDTL G  KI +RD F+ K+  MNIL+W  D+DG +PQP ILKPRP WTGKQ+     
Sbjct: 61   IVQDTLCGIYKICRRDVFLTKEQVMNILLWVPDWDGVIPQPAILKPRPRWTGKQMI---- 116

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
                                         ++   L  G   KKT+G + G +IH I+ E 
Sbjct: 117  -----------------------------MQVANLCMGMFSKKTVGATGGGVIHTIFNEY 147

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP+ A  F    Q +VNYWLL + FSIGIGDTI D  T+E I + +   K  V  +   A
Sbjct: 148  GPETAMNFFNGAQTVVNYWLLHHGFSIGIGDTIPDLATIEKIEEAVRVRKEEVDEITASA 207

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             D +LEP PG  + E+FE+KV++ LN ARDEAG+  +KS  + NN   M  +GSKGS IN
Sbjct: 208  TDNTLEPLPGMNVRETFESKVSRALNNARDEAGTETEKSFKDLNNAVQMARSGSKGSIIN 267

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHA
Sbjct: 268  ISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHA 327

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGDV+QFLYGEDG+D   
Sbjct: 328  MAGREGLIDTAVKTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDVVQFLYGEDGLDGAH 387

Query: 886  IESQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQ--EYIDDLKTIKELRDVFDAEV 941
            IE+Q +D +K     F   +R + MD +   +PN + Q  E   D+    E++   D E 
Sbjct: 388  IENQRVDIIKCSDERFRDRYRVDLMDPDRTLSPNVLEQATEIAGDI----EVQKYLDEEW 443

Query: 942  QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
            ++L  DR      +A   +    LP+N++R++ +A+  F++     SD+HP EV+  V  
Sbjct: 444  EQLLKDR-AFMRSVAKEDEEMMQLPINVQRILESAKTIFRIREGAISDLHPAEVIPQVRA 502

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L ERL VV G+D +S EAQ++ATL F   LRS  A +R++ E+ L R AF+ V+G IESR
Sbjct: 503  LLERLVVVRGDDVISREAQESATLLFKAQLRSRLAFRRLVVEYSLNRLAFQHVLGAIESR 562

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            F +++  PGEM+G +AAQSIGEPATQMTLNTFH+AGVS+KNVTLGVPRL+EI+NVA  IK
Sbjct: 563  FSKAMANPGEMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVATNIK 622

Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
            TPS++V+  P     KE  K ++  +E+T+LRSVTE TE++YDPD   T+IE D + V+S
Sbjct: 623  TPSMTVYQDPSRAMDKESVKQLRSVVEHTSLRSVTETTEIYYDPDIQSTVIEADRDMVES 682

Query: 1182 YYEMPDEDIAPE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
            Y+ +P ED+A +  + S WLLRI L+R  ++DK L++  VA KI   +  D+  IF+D+N
Sbjct: 683  YFIIP-EDVADDSSRQSKWLLRIILSRPKLLDKSLTVQDVAMKIKDAYPQDIAVIFSDNN 741

Query: 1240 ADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAV-------- 1291
            AD+ ++RIR + D   K + +D+  E DV LKK+ES++L  + LRGV  +          
Sbjct: 742  ADEQVIRIRQIQDS--KQDDDDDDTEYDVTLKKLESHLLDTLTLRGVAGIERAFINEKSR 799

Query: 1292 ----------------MCHE-----------------DVDARRTTSNHLIEIIEVLGIEA 1318
                            +C E                  VD  RT SN  IEI+EV GIEA
Sbjct: 800  VRVLEDGSLHQSADDPLCKEWVLETSGSALGEVLTIPGVDTTRTYSNQFIEILEVFGIEA 859

Query: 1319 VRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFE 1378
             R ALL EL  V++FDGSYVN+RHLA+L D MT RG LMA+TRHGINR DTG +MRCSFE
Sbjct: 860  TRTALLRELTQVLAFDGSYVNHRHLALLVDVMTSRGFLMAVTRHGINRADTGALMRCSFE 919

Query: 1379 ETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYME 1438
            ETV+ILLDAA FAE D  RGV+EN++LGQ+AP GTG+  +YL+ +ML   +       M 
Sbjct: 920  ETVEILLDAAAFAELDDCRGVSENLILGQMAPAGTGEFDVYLDQDMLMGVVSSN-AGLMA 978

Query: 1439 GLEFGMTP--ARSPV-SGTPYHDGMMSPGYLFS--PNLRLSPVTDAQFSPYVGGMAFSPT 1493
                G+    A +P  S +P  D M    Y+ +  P+   SP+  A      G   + P+
Sbjct: 979  ADGKGLLSDGAATPYDSSSPLQDNM----YIGTPDPDSNFSPIRQAGSETPAGFTEYQPS 1034

Query: 1494 S-SPGYSPS---SP--GYSPSSP-GYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG 1546
              S G+SP    SP  GYSPSSP   SPTSP YSP+S GYSPTSPG S TSP +  SSPG
Sbjct: 1035 GFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSS-GYSPTSPGMSITSPRFM-SSPG 1092

Query: 1547 YSPTSPAYSPTSPSYSPTSPSY--SPTSPSYSPTSPSY---------------------S 1583
            +SP SPA++PTSP+YSPTSPSY  SPTSPSYSPTSP +                     S
Sbjct: 1093 FSPASPAFAPTSPAYSPTSPSYQQSPTSPSYSPTSPGFSPTSPSYSPTSPSFSPASPAFS 1152

Query: 1584 PTSPSYSPTSPSYS-PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP-SYSPTSPSY--S 1639
            PTSPSYSPTSP+    T    SPT    SPTSP Y+PTSP +SPTSP +YSPTSP++  S
Sbjct: 1153 PTSPSYSPTSPALGVSTGRHLSPT----SPTSPKYTPTSPGWSPTSPETYSPTSPNFSGS 1208

Query: 1640 PTSPSYSPTSPSYSPTSPSYSPTSP 1664
            PTSP   PTSP YSPTSP+++P SP
Sbjct: 1209 PTSPG-GPTSPGYSPTSPTFNPISP 1232



 Score =  140 bits (352), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 103/234 (44%), Positives = 135/234 (57%), Gaps = 45/234 (19%)

Query: 1567 SYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPS--YSPTSP-AYSPTSPAYSPTSP 1622
            ++SP   + S T   ++   PS +S     +   SP   YSP+SP   SPTSP YSP+S 
Sbjct: 1013 NFSPIRQAGSETPAGFTEYQPSGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSS- 1071

Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY--SPTSPGYSPTSPSY 1680
             YSPTSP  S TSP +  +SP +SP SP+++PTSP+YSPTSP+Y  SPTSP YSPTSP +
Sbjct: 1072 GYSPTSPGMSITSPRFM-SSPGFSPASPAFAPTSPAYSPTSPSYQQSPTSPSYSPTSPGF 1130

Query: 1681 SP---------------------TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
            SP                     TSP+YSPTSP+    + ++                SP
Sbjct: 1131 SPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGVSTGRH---------------LSP 1175

Query: 1720 YSPTSPNYSPTSSSYSPTSP-SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
             SPTSP Y+PTS  +SPTSP +YSP+SP +S S     G  +P YSP+SP ++P
Sbjct: 1176 TSPTSPKYTPTSPGWSPTSPETYSPTSPNFSGSPTSPGGPTSPGYSPTSPTFNP 1229



 Score =  131 bits (329), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 108/228 (47%), Positives = 140/228 (61%), Gaps = 37/228 (16%)

Query: 1581 SYSPTSPSYSPTSPSYSPTSPS-----YSPTSPAYSPTSPAYSPTSP-AYSPTSPSYSPT 1634
            ++SP   + S T   ++   PS     +SP   A SP    YSP+SP   SPTSP YSP+
Sbjct: 1013 NFSPIRQAGSETPAGFTEYQPSGFSGGFSPHG-ARSPGG-GYSPSSPFNTSPTSPRYSPS 1070

Query: 1635 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY--SPTSPTYSPTSP 1692
            S  YSPTSP  S TSP +  +SP +SP SPA++PTSP YSPTSPSY  SPTSP+YSPTSP
Sbjct: 1071 S-GYSPTSPGMSITSPRFM-SSPGFSPASPAFAPTSPAYSPTSPSYQQSPTSPSYSPTSP 1128

Query: 1693 SYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS-----------SSYSPTSPSY 1741
             ++P S  YSP+      +     +  +SPTSP+YSPTS           S  SPTSP Y
Sbjct: 1129 GFSPTSPSYSPTSPSFSPA-----SPAFSPTSPSYSPTSPALGVSTGRHLSPTSPTSPKY 1183

Query: 1742 SPSSPTYSPSSPYNAGGGNPDYSPSSPQY--SPSAGYSPSAPGYSPSS 1787
            +P+SP +SP+SP         YSP+SP +  SP++   P++PGYSP+S
Sbjct: 1184 TPTSPGWSPTSPET-------YSPTSPNFSGSPTSPGGPTSPGYSPTS 1224



 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/215 (42%), Positives = 120/215 (55%), Gaps = 52/215 (24%)

Query: 1610 YSPTSPAYSPTSPAYSPTSPS-----YSP---TSPS--YSPTSP-SYSPTSPSYSPTSPS 1658
            +SP   A S T   ++   PS     +SP    SP   YSP+SP + SPTSP YSP+S  
Sbjct: 1014 FSPIRQAGSETPAGFTEYQPSGFSGGFSPHGARSPGGGYSPSSPFNTSPTSPRYSPSS-G 1072

Query: 1659 YSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS 1718
            YSPTSP  S TSP +  +SP +SP SP ++PTSP+Y+P S    PS   SP+SP      
Sbjct: 1073 YSPTSPGMSITSPRFM-SSPGFSPASPAFAPTSPAYSPTS----PSYQQSPTSPS----- 1122

Query: 1719 PYSPTSPNYSP---------------------TSSSYSPTSPSYSPSSPTY-SPSSPYNA 1756
             YSPTSP +SP                     TS SYSPTSP+   S+  + SP+SP   
Sbjct: 1123 -YSPTSPGFSPTSPSYSPTSPSFSPASPAFSPTSPSYSPTSPALGVSTGRHLSPTSPT-- 1179

Query: 1757 GGGNPDYSPSSPQYSPSA--GYSPSAPGYSPSSTS 1789
               +P Y+P+SP +SP++   YSP++P +S S TS
Sbjct: 1180 ---SPKYTPTSPGWSPTSPETYSPTSPNFSGSPTS 1211



 Score = 65.9 bits (159), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/138 (39%), Positives = 74/138 (53%), Gaps = 27/138 (19%)

Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
            ++SP   A S T  G++   PS           S  ++P  A+ SP   YSPSSP  +  
Sbjct: 1013 NFSPIRQAGSETPAGFTEYQPS---------GFSGGFSPHGAR-SPGGGYSPSSPFNT-- 1060

Query: 1718 SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GY 1776
               SPTSP YSP SS YSPTSP  S +SP +  S         P +SP+SP ++P++  Y
Sbjct: 1061 ---SPTSPRYSP-SSGYSPTSPGMSITSPRFMSS---------PGFSPASPAFAPTSPAY 1107

Query: 1777 SPSAPGYSPSSTS-QYTP 1793
            SP++P Y  S TS  Y+P
Sbjct: 1108 SPTSPSYQQSPTSPSYSP 1125


>gi|345309516|ref|XP_003428845.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1, partial
            [Ornithorhynchus anatinus]
          Length = 988

 Score = 1181 bits (3056), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/1060 (55%), Positives = 748/1060 (70%), Gaps = 96/1060 (9%)

Query: 31   MSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKP 88
            MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  NM ECPGHFGH+ELAKP
Sbjct: 1    MSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKP 60

Query: 89   MFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NPKNRLKKILDACKNKTK 146
            +FH+GF+   + ++R VCF CSK+L D ++ K K  L      PK RL  + D CK K  
Sbjct: 61   VFHVGFLVKTMKVLRCVCFFCSKLLVDANNPKIKDILGKSKGQPKKRLTHVYDLCKGKNI 120

Query: 147  CEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
            CEGG+E+D    V   +G+E L K KG  GCG  QP++   G+++ AE+K     N+D +
Sbjct: 121  CEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRTGLELYAEWK---HVNEDSQ 177

Query: 201  QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS- 259
                  E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WMI+ VLP+PP  VRP+ 
Sbjct: 178  ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAV 231

Query: 260  ---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPG 310
                     DDLTH+LA I++ N  LRR E+NGA AH+I+E  +LLQFH+AT  DNELPG
Sbjct: 232  VMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPG 291

Query: 311  QPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSI 370
             PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVITPDP ++IDQ+GVP SI
Sbjct: 292  LPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSI 351

Query: 371  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 430
            A N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G R+DLR+  K SD HL+
Sbjct: 352  AANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGDRIDLRFHPKPSDLHLQ 408

Query: 431  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 490
            +GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLNLSVT+PYNADFDGDEM
Sbjct: 409  IGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEM 468

Query: 491  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
            N+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   RK TKRD F+E+   M
Sbjct: 469  NLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVM 528

Query: 551  NILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKG---IL 606
            N+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LI+P  IN  RT + H D+ D G    +
Sbjct: 529  NLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINCIRTHSTHPDDEDSGPYKHI 588

Query: 607  TAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 666
            + GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  R F  + Q ++N WLL
Sbjct: 589  SPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDTTRLFYSNIQTVINNWLL 648

Query: 667  QNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKV 726
                +IGIGD+IADAKT + I +TI KAK +V  +I++A +  LEP PG T+ ++FEN+V
Sbjct: 649  IEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQV 708

Query: 727  NQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 786
            N++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ A VGQQNVEGKRIPFG
Sbjct: 709  NRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFG 768

Query: 787  FVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 846
            F  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQ
Sbjct: 769  FKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQ 828

Query: 847  RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFR 906
            RRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q L +LK     F+K FR
Sbjct: 829  RRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFR 888

Query: 907  FEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLP 966
            F+   E                  + LR     E+                         
Sbjct: 889  FDYTNE------------------RALRRTLQEEL------------------------- 905

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
              +K ++ NA                +E    V +L ++L +V GEDPLS +AQ+NATL 
Sbjct: 906  --VKDVLSNAH---------------IESTTXVKELSKKLVIVNGEDPLSRQAQENATLL 948

Query: 1027 FNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
            FNI LRST  S+R+ +E RL+ EAF+W++GEIES+F Q++
Sbjct: 949  FNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAI 988


>gi|350590849|ref|XP_003483150.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sus scrofa]
          Length = 1092

 Score = 1180 bits (3052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/1009 (57%), Positives = 737/1009 (73%), Gaps = 39/1009 (3%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK GGL DPR G I+R  +C+TC  N
Sbjct: 18   IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
            M ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+L D ++ K K  L      P
Sbjct: 78   MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137

Query: 131  KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
            K RL  + D CK K  CEGG+E+D    V   +G+E L K KG  GCG  QP++   G++
Sbjct: 138  KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + AE+K     N+D +      E+K  L+ ERV  + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198  LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ VLP+PP  VRP+          DDLTH+LA I++ N  LRR E+NGA AH+I+E  +
Sbjct: 249  IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT  DNELPG PRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309  LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV  G    PG   AKYIIRD+G 
Sbjct: 369  PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426  RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL   
Sbjct: 486  LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
            RK TKRD F+E+   MN+LM+   +DGKVPQP ILKPRPLWTGKQ+F+LIIP  IN  RT
Sbjct: 546  RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605

Query: 595  AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             + H D+ D G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D  
Sbjct: 606  HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R F  + Q ++N WLL    +IGIGD+IAD+KT + I +TI KAK +V  +I++A +  L
Sbjct: 666  RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+ 
Sbjct: 726  EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786  AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+    +E Q 
Sbjct: 846  GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
            L +LK     F+K FRF+   E      + ++ + D+ +   +++  + E +++  DR  
Sbjct: 906  LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
            L   I  +GDS   LP NL R+IWNAQK         +  HP E+V A+
Sbjct: 966  LRV-IFPTGDSKVVLPCNLLRMIWNAQKIXXXXXXXXA--HPGEMVGAL 1011



 Score =  114 bits (285), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 66/89 (74%)

Query: 1053 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1112
            W   +I          PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E
Sbjct: 988  WNAQKIXXXXXXXXAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKE 1047

Query: 1113 IINVAKKIKTPSLSVFLKPGVNSTKERAK 1141
            +IN++KK KTPSL+VFL        ERAK
Sbjct: 1048 LINISKKPKTPSLTVFLLGQSARDAERAK 1076


>gi|120561215|gb|ABM26993.1| RNA polymerase II largest subunit, partial [Furculomyces boomerangus]
          Length = 1024

 Score = 1178 bits (3048), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 577/1035 (55%), Positives = 751/1035 (72%), Gaps = 41/1035 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+EL +P++H GF+  V  I+  VC+ CSK+  D+ +  F++ALK+RN   RLK + D C
Sbjct: 1    HIELTRPVYHPGFIIRVKKILECVCWFCSKLKTDDSEPAFQRALKVRNSNQRLKMVWDIC 60

Query: 142  KNKTKCEGGDEID------------------VPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
            K++T CE   E +                  V G  G +  KK  GGCG +QP    EG+
Sbjct: 61   KSRTTCEASPESEERPPVSEFQDEEGRNRQLVDGLIGSKR-KKGHGGCGNKQPVFRKEGL 119

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
             + A +K+       +E + E    KQ ++  +VL VLK+ISDED   +GLN ++ARP+W
Sbjct: 120  NLTATFKS----TGGEEGVAEG---KQPISVTQVLQVLKKISDEDALAMGLNVQFARPEW 172

Query: 244  MILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            +I+ V+P+PP  VRPS          DDLT++L  II+ N  ++  E  GAP HII EF 
Sbjct: 173  LIISVMPVPPLAVRPSIQMDATRQSEDDLTYKLNDIIKANVRVQSCEVEGAPLHIIEEFE 232

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
            +LLQFH+AT+ +NE+ G P+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI
Sbjct: 233  KLLQFHVATFMNNEISGLPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVI 292

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            T DP I+IDQ+GVP SIA N+TYPE VTPYNIE+L+E+V+ GP+  PG   AKY+IRD G
Sbjct: 293  TGDPNIDIDQVGVPRSIARNMTYPEVVTPYNIEKLQEMVQNGPNEHPG---AKYVIRDSG 349

Query: 414  QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
            +R+DLRY K+  D  L +GY+VERH+ D D V+FNRQPSLHKMS+MGHR+K+MPYSTFRL
Sbjct: 350  ERIDLRYSKRGGDIPLRIGYRVERHMLDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRL 409

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NLSVTSPYNADFDGDEMN+H+PQS ETRAEV E+ MVPK IVSPQSN PVMGIVQDTL  
Sbjct: 410  NLSVTSPYNADFDGDEMNLHLPQSEETRAEVTEICMVPKQIVSPQSNMPVMGIVQDTLCA 469

Query: 534  CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
                TKRDT ++ D  MN+LM   D+DG VP P ILKP+PLW+GKQ+++++IPK +N  R
Sbjct: 470  INIFTKRDTLLQYDFVMNLLMTIPDWDGIVPTPCILKPQPLWSGKQIYSMVIPKGVNCHR 529

Query: 594  TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
              + H DN+    + GDT + IE GELLSG LCK+T+G     LIHVI  E+GPD A+KF
Sbjct: 530  YNSTHPDNEYTWCSPGDTRIIIENGELLSGALCKRTVGAVDSGLIHVIRNELGPDYAKKF 589

Query: 654  LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
             G TQ LVNYW LQ  FS+GIGDTIAD  TM+T+ D I +    V  LI+ AQ+  LE  
Sbjct: 590  FGGTQKLVNYWFLQTGFSVGIGDTIADDSTMQTVGDIIRECYMRVDELIRDAQEDRLERL 649

Query: 714  PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
            PG T+ E+FE+KVN  LN ARD+AG + Q  L E NN++ MV +GSKGS+IN+SQMTA V
Sbjct: 650  PGMTLKETFESKVNGELNRARDQAGKTVQNRLKECNNVRRMVVSGSKGSYINVSQMTASV 709

Query: 774  GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
            GQQNVEGKRIPFGF +RTLPHF+KDDY P+SRGFVENSYLRGLTPQEF+FHAMGGREGLI
Sbjct: 710  GQQNVEGKRIPFGFKNRTLPHFSKDDYSPQSRGFVENSYLRGLTPQEFYFHAMGGREGLI 769

Query: 834  DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDS 893
            DTAVKT+ETGYIQRRLVKA+EDIMV YDGTVRNSLG +I F+YGEDGMD+ ++E+Q L +
Sbjct: 770  DTAVKTAETGYIQRRLVKALEDIMVHYDGTVRNSLGSIIDFVYGEDGMDACFLETQNLQT 829

Query: 894  LKMKKSEFDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL 951
            L +  + F+  +R + MD  + ++ + +    + +++    ++ + D E  +L  DR +L
Sbjct: 830  LTISDNRFENMYRVDVMDSSKGFSSDSLDFSILKNIEANDSVQLLLDEEFNQLTLDRKEL 889

Query: 952  ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG 1011
             + I T+G+S+ P+P N+ RLI NAQ+ F +D R+PS++HP  V+E + +L +RL V+ G
Sbjct: 890  QSFICTTGESTHPMPANMPRLILNAQQIFHIDRRKPSNLHPSYVIEGIRQLADRLVVIRG 949

Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
            +D LS EAQ NATL F I LRS  ++KRV++E  L   +F+W+IGE+E+ F +++V+PGE
Sbjct: 950  DDKLSTEAQMNATLLFKIHLRSFLSTKRVIEEFHLDTNSFDWIIGEVEACFKRAIVSPGE 1009

Query: 1072 MIGCVAAQSIGEPAT 1086
            M+G +AAQSIG+PAT
Sbjct: 1010 MVGTLAAQSIGQPAT 1024


>gi|120561233|gb|ABM27002.1| RNA polymerase II largest subunit, partial [Entophlyctis
            confervae-glomeratae]
          Length = 1013

 Score = 1177 bits (3046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/1036 (55%), Positives = 750/1036 (72%), Gaps = 54/1036 (5%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H++LAKP++H G +K V  ++  VCF+C K+  D  + +F    K+ N   + +++   C
Sbjct: 1    HIDLAKPVYHAGLIKKVKKVLECVCFHCGKLKVDYTNPRFNALQKLSNRARKFEEVWAIC 60

Query: 142  KNKTKCEGG----DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEG-MKMIAEYKAQRKKN 196
            K K  CEG     DEID+   D  +  K N GGCG +QP    EG + +   YKA +   
Sbjct: 61   KTKMICEGAELEDDEIDL---DPFKAKKSNHGGCGGRQPVFKKEGPLSLSTHYKATK--- 114

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D+ E   +P  +   LTA++V  + ++ISD DC  +GLNP++ARP+WMI+ VLP+PP  V
Sbjct: 115  DEVEGGADPT-KIAPLTADKVHQLFQKISDADCLGMGLNPQWARPEWMIISVLPVPPMAV 173

Query: 257  RPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
            RP+          DDLTH+L  I+  N+ LR  E +GAPAHII+EF  LLQ+H+ATY DN
Sbjct: 174  RPAVSMDGVATNQDDLTHKLRDIVLTNQQLRTHETDGAPAHIITEFENLLQYHVATYMDN 233

Query: 307  ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
            ++ G P A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP ++IDQ+GV
Sbjct: 234  DIAGIPAALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPHLSIDQVGV 293

Query: 367  PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
            P SIA NLT+PETVTPYNI +++++V+ GP   PG   AKY+I+DDGQR+DLRY ++  D
Sbjct: 294  PRSIARNLTFPETVTPYNIHKMQQMVQNGPTEHPG---AKYVIKDDGQRIDLRYNRRGGD 350

Query: 427  HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 486
             HL+ GY+VERHL D D V+FNRQPSLHKMS+MGHR+++MPYSTFRLNLSVTSPYNADFD
Sbjct: 351  IHLQPGYRVERHLMDDDIVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFD 410

Query: 487  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
            GDEMN+HVPQS+ET+AE++EL MVPK IVSPQ N P+MGIVQDTL G RK TKRDTF+ +
Sbjct: 411  GDEMNLHVPQSYETKAELMELCMVPKQIVSPQKNAPIMGIVQDTLCGIRKFTKRDTFLRQ 470

Query: 547  DVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGIL 606
            D+ MN+LMW  D+DG +PQP I+KP PLWTGKQ+ +LI+P +IN+            G+ 
Sbjct: 471  DLVMNLLMWVPDWDGTIPQPAIIKPVPLWTGKQIVSLILPAKINV-----------TGMH 519

Query: 607  TAG------------DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
            TA             D  V IE GELLSG L K  +G+S+G +IHV   E GPD A+ F 
Sbjct: 520  TAYVQTPSNPEPDIPDCKVLIENGELLSGILDKSMVGSSSGGVIHVAMNEYGPDVAKAFF 579

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
               Q +VNYWLLQ+ FSIGIGDTIAD +T + IND I+K+K     +IK AQ+ +LE  P
Sbjct: 580  NGCQTVVNYWLLQHGFSIGIGDTIADKETTQQINDAIAKSKAKCSEIIKAAQNGTLEGMP 639

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G ++ E+FE+ + + LNTARD AG SAQ +L E NN+K MV AGSKGS+IN++QM+ACVG
Sbjct: 640  GLSVRETFESYITKELNTARDGAGKSAQMTLKEFNNVKQMVVAGSKGSYINVAQMSACVG 699

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQNVEG RIPFGF  R+LPHFTKDD+ PE+RGFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 700  QQNVEGSRIPFGFKYRSLPHFTKDDHTPEARGFVENSYLRGLTPQEFFFHAMGGREGLID 759

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+ED+M +YDGTVRN+LG+++QF YGEDGMD   +E Q LD++
Sbjct: 760  TAVKTAETGYIQRRLVKALEDLMAQYDGTVRNALGEIVQFCYGEDGMDGAKVERQHLDNM 819

Query: 895  KMKKSEFDKAFRFEM--DEENWNPNYMLQEYIDDL-KTIKELRDVFDAEVQKLEADRYQL 951
                  F K ++ +M  D+  +  N +  +  +DL KT  + R  FDAE ++LE DR  L
Sbjct: 820  GTSDQAFVKMYKVDMASDKHKFRNNVLEFKISEDLMKTEAQAR--FDAEFEQLEHDRRTL 877

Query: 952  ATEI-ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
              EI A S  ++WPLP+N++R+IWNAQ  F +D  +P+++HP+ V+  V  L ++L VV 
Sbjct: 878  RQEIFAGSSTTAWPLPLNIRRMIWNAQNAFNIDRTKPTNLHPITVMNEVQNLLDKLIVVR 937

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G D LS E Q NATL F+IL+RS  +S+RV++E  L+ EAF+W+I EI +RF Q +V PG
Sbjct: 938  GSDELSKEGQDNATLLFHILIRSMLSSRRVVEEFHLSSEAFDWIIKEIGNRFNQCVVNPG 997

Query: 1071 EMIGCVAAQSIGEPAT 1086
            EM+G +AAQSIGEPAT
Sbjct: 998  EMVGVLAAQSIGEPAT 1013


>gi|83320422|gb|ABC02838.1| RNA polymerase II largest subunit, partial [Batrachochytrium
            dendrobatidis]
          Length = 985

 Score = 1175 bits (3039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/996 (58%), Positives = 741/996 (74%), Gaps = 27/996 (2%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GF+K +  ++  VC  C K+  DE + +F    +I++ + R  ++   CK KT CEGG+E
Sbjct: 1    GFLKIIKKVLECVCHYCGKLKVDESNERFVLFRRIKSRRRRFHEVWQLCKTKTVCEGGEE 60

Query: 153  IDVPGQD--GEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
                GQ      P KK  GGCG +QP      +K++A +KA   K++D +   + +E   
Sbjct: 61   QSEGGQQKPNGHPHKKPHGGCGQKQPVYRSAILKIMANFKA--TKDEDGKHEAQTIE--- 115

Query: 211  TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------D 260
             +T E+ L +L+ ISD+D   +GL+  +ARP+WMI+  LP+PP PVRPS          D
Sbjct: 116  -MTPEKTLTLLRSISDQDATDMGLSADWARPEWMIITTLPVPPMPVRPSISMDGAGRGED 174

Query: 261  DLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGR 320
            DLTH+L  II+ N +L+R E  GAPAHI++EF  LLQFH+ATY +N++   P+A Q+SGR
Sbjct: 175  DLTHKLMDIIKANISLKRHETEGAPAHIVNEFENLLQFHVATYMNNDIANLPQAMQKSGR 234

Query: 321  PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETV 380
            P+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP ++IDQ+GVP SIA NLT+PETV
Sbjct: 235  PLKSIAARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPRSIARNLTFPETV 294

Query: 381  TPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLN 440
            TPYNI+ L+++V+ GP+  PG   AKY+IRD+G+R+DLRY K+  D HL+ GYKVERHL 
Sbjct: 295  TPYNIDILQQMVQNGPNEHPG---AKYVIRDNGERVDLRYSKRGGDIHLQYGYKVERHLL 351

Query: 441  DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFET 500
            D D+++FNRQPSLHKMS+MGHR+KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS ET
Sbjct: 352  DNDYIIFNRQPSLHKMSMMGHRVKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSHET 411

Query: 501  RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFD 560
            RAE+  L MVP  IVSPQ N PVMGIVQDTL G RK +KRDTF+++D+ MN+LMW  D+D
Sbjct: 412  RAEIQGLCMVPLQIVSPQKNAPVMGIVQDTLCGIRKFSKRDTFLKRDLMMNLLMWVPDWD 471

Query: 561  GKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGEL 620
            G +P P ILKP PLWT KQ+ +LI+PK INL    A H DN+K  ++ GDT V IE GEL
Sbjct: 472  GIIPTPAILKPIPLWTAKQIISLILPK-INLVGFHAAHPDNEKTDISPGDTKVLIEDGEL 530

Query: 621  LSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIAD 680
            L G LCK+T+G+S   +IH    E+GPD    F   TQ ++NYWLLQN FSIGIGDTIAD
Sbjct: 531  LMGILCKRTVGSSANGIIHTSMNELGPDVTMGFFNGTQRVINYWLLQNGFSIGIGDTIAD 590

Query: 681  AKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSS 740
             +TMETINDTI+ AK  V  +I++AQ  +LE  PG T+ +SFE+ VNQ LN ARD AG S
Sbjct: 591  RQTMETINDTIAHAKREVNKIIQKAQTDTLEVLPGMTIRQSFESLVNQELNRARDNAGKS 650

Query: 741  AQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDY 800
            A+KSL E NN+K MV +GSKGSFINISQMTACVGQQNVEGKRIPFGF DRTLPHFT+DD+
Sbjct: 651  AEKSLKEYNNVKQMVVSGSKGSFINISQMTACVGQQNVEGKRIPFGFKDRTLPHFTRDDH 710

Query: 801  GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKY 860
             PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+ED+M KY
Sbjct: 711  SPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDVMAKY 770

Query: 861  DGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE--ENWNPNY 918
            DGTVRN+LGD++QF YGEDGM+   +E QTL S+ M  ++F +++R ++ +      PN 
Sbjct: 771  DGTVRNALGDIVQFTYGEDGMEGAKVEKQTLRSMSMSNADFVRSYRVDILDGVHKLKPNK 830

Query: 919  MLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEI--ATSGDSSWPLPVNLKRLIWNA 976
            +    IDD+    E +  FD E ++L  DR  L  +I   TS D  W LPVNL+RLIWNA
Sbjct: 831  LEYRIIDDMSQNPEAQVKFDEEFEQLAEDRLMLRQQIFPNTSTD-KWALPVNLERLIWNA 889

Query: 977  QKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFA 1036
            + TF +D  +PSD+HPM V++ V  L + L VV G+D LS+EAQ NATL F ILLRST A
Sbjct: 890  RNTFHLDRNKPSDLHPMHVIDKVKALLDNLVVVRGKDELSLEAQYNATLLFQILLRSTLA 949

Query: 1037 SKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEM 1072
            ++RV++++ L+ +AF+W++GEI++RF Q++V PGEM
Sbjct: 950  TRRVIEDYHLSTQAFDWLLGEIDARFNQAIVHPGEM 985


>gi|21280521|gb|AAM45153.1|AF395835_1 RNA polymerase II largest subunit [Cercomonas ATCC50319]
          Length = 1014

 Score = 1170 bits (3026), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/1026 (55%), Positives = 739/1026 (72%), Gaps = 24/1026 (2%)

Query: 76   CPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLK 135
            CPGHFGHLELAKP+ H+ F+ T+L ++R VC++CS +    D+ +F +A +++NPK RL 
Sbjct: 1    CPGHFGHLELAKPVIHVSFLPTILKLLRCVCYHCSALXVSRDNRRFLEAARVKNPKKRLN 60

Query: 136  KILDACKNKTKCEGGDEIDVPGQDGEEPL--KKNKGGCGAQQPKLTIEGMKMIAEYKAQR 193
             +L+ C+    C GG E+D    DGE P   KK + GCG+  P    +G+K+I E+ A  
Sbjct: 61   AMLEVCRTAKDCGGGLELDPV--DGERPAEEKKKRTGCGSTLPTYRRDGIKIIVEFPANT 118

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP--- 250
            +  D        V+RK+ L+ +++  + + I+DED   LGL+P  A P W +L VLP   
Sbjct: 119  EFED-----AGSVDRKKNLSPQKIYDIFRNITDEDMTALGLDPVNAHPSWFLLTVLPVPP 173

Query: 251  -------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                   +     R SDDLT++L  I++HNE L++QE  GA  HI+ +   LLQF +AT 
Sbjct: 174  PPVRPSVMLDASTRASDDLTYKLGDIVKHNEQLKKQEAQGAAEHILQDTHDLLQFSVATL 233

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
            FD E+ G PR+     R       RL  K GRIRGNLMGKRVDFSARTVIT DP +++DQ
Sbjct: 234  FDXEISGLPRSDNEVVRLSNQFVKRLVGKGGRIRGNLMGKRVDFSARTVITGDPNLSVDQ 293

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA+ LT+PE VT +NI +++ LV  GP+  PG   A+ IIRDDG+R+DLR++KK
Sbjct: 294  VGVPRSIAMTLTFPEMVTRFNIAQMRRLVANGPNVHPG---ARTIIRDDGKRIDLRFVKK 350

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            SSD HLE+GY++ERH++DGD +LFNRQPSLHKMSIM H+I++MP+STFRLNLS T+PYNA
Sbjct: 351  SSDQHLEVGYRIERHIHDGDVILFNRQPSLHKMSIMAHKIRVMPWSTFRLNLSCTTPYNA 410

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS  TRAE LE+M+ P+ IVSPQ+N+PV+GIVQDTLLGC K T RD F
Sbjct: 411  DFDGDEMNLHVPQSMMTRAEALEIMLCPRQIVSPQANKPVIGIVQDTLLGCMKFTYRDNF 470

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            ++K +  NILM  E++DG VP P ILKP PLW+GKQ+F+LIIP+ +N+ R A  H D++ 
Sbjct: 471  LDKAMVFNILMHLENWDGTVPIPCILKPVPLWSGKQIFSLIIPR-VNMERKANGHPDSEH 529

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
             +++  DT VRIE+G+LL G + K+T+G + GSLIHVIW E G +A R+FL   Q +VNY
Sbjct: 530  TVMSVNDTRVRIEQGQLLMGVVDKQTVGNTPGSLIHVIWNECGFEATRQFLAECQKVVNY 589

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            +L+   FS+GIGDTIA   T+E I  TI +AK  V NLIK+A   +L+ +PG T +ESFE
Sbjct: 590  FLMHYGFSVGIGDTIAPPSTLEKIESTIKQAKKEVLNLIKKAXSGNLDRQPGSTNLESFE 649

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
            N+VN VLN A D+AG S +  L++ NN+ AMV+AGSKG+ INI Q+ ACVGQQNV GKRI
Sbjct: 650  NQVNGVLNKAADDAGKSVKAQLTKMNNINAMVSAGSKGNAINICQIIACVGQQNVSGKRI 709

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
            PFGF  RTLPHF K D  PES+GFV NSYL+GLTPQEFFFHAMGGREGLIDTAVKT+ETG
Sbjct: 710  PFGFHGRTLPHFNKGDLSPESKGFVSNSYLQGLTPQEFFFHAMGGREGLIDTAVKTAETG 769

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRRLVKAMED+M+KYD TVRNSLGD+IQF YGEDGMD V+IE Q LDSLKM  + F K
Sbjct: 770  YIQRRLVKAMEDVMIKYDATVRNSLGDIIQFAYGEDGMDGVYIEKQKLDSLKMDNARFLK 829

Query: 904  AFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
             ++ ++       ++M  E  + L    E  D  + E+++L  DR  L  +I  +G+   
Sbjct: 830  TYQLDVSRPE-QLDFMDAEVREHLLRTPEAHDALETELKQLRDDRQLLRDKIQPTGEDMV 888

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNA 1023
             LPVNLKRLIWNAQK F VD    S++ P +V+  V  L ERL VV G DPLS++AQ NA
Sbjct: 889  HLPVNLKRLIWNAQKRFHVDRFSKSNIEPQQVIADVKSLAERLIVVRGTDPLSLQAQTNA 948

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGE 1083
            T  F I+LRS  ++KRVLK++RL R+AF W+IGEIE+RF Q++V PGE++G +AAQ+IGE
Sbjct: 949  TTLFKIMLRSVLSAKRVLKDYRLNRDAFSWLIGEIEARFNQAIVHPGEVVGSIAAQAIGE 1008

Query: 1084 PATQMT 1089
            PATQMT
Sbjct: 1009 PATQMT 1014


>gi|83320454|gb|ABC02854.1| RNA polymerase II largest subunit, partial [Spiromyces aspiralis]
          Length = 1022

 Score = 1167 bits (3018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/1032 (55%), Positives = 743/1032 (71%), Gaps = 42/1032 (4%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELA+P++H GF   V  ++  VC+ CSK+ ADE D +F  A   +NP  R + I + C
Sbjct: 1    HIELARPVYHAGFSTRVKRVLECVCWYCSKLKADESDPEFVLAQAQKNPNLRSQMIWNLC 60

Query: 142  KNKTKCE---------------GGDEIDVPGQDGEEPL-----KKNKGGCGAQQPKLTIE 181
            K++T C                G  + D   Q+    +     K++ GGCG +QP+    
Sbjct: 61   KSRTVCGVSNAEAEENAMKKAFGDSDPDRRTQNAVREMMGENKKRSHGGCGHRQPQFYKS 120

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
             +K+ A++K    +             +QTLT  +VL VLKRISDED   +GL+P+YARP
Sbjct: 121  ELKLKADFKRATGEEGGAGG-------RQTLTVTQVLQVLKRISDEDAYAMGLDPQYARP 173

Query: 242  DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            +WMI+ V+P+PP  VRPS          DDLT++L  I++ N  +R  E +GAP HII +
Sbjct: 174  EWMIMTVMPVPPMAVRPSIQMDAVRQSEDDLTYKLNDILKANARVRSCEVDGAPMHIIED 233

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
            F  LLQFH+ T+ +NE+ G P+A Q+SGRPI+SI +RLK KEGR+RGNLMGKRVDFSART
Sbjct: 234  FESLLQFHVVTFMNNEISGLPQALQKSGRPIRSIRARLKGKEGRLRGNLMGKRVDFSART 293

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VIT DP I+ID++GVP SIA NLTYPE VTPYNIE+L+ELV  GP   PG   AKY+IRD
Sbjct: 294  VITGDPNISIDEVGVPRSIARNLTYPEVVTPYNIEKLQELVRNGPTEHPG---AKYVIRD 350

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
             G+R+DLRY K+  D  L +GY+VERH+ DGD V+FNRQPSLHKMS+MGHR++++PYSTF
Sbjct: 351  TGERIDLRYNKRGGDIPLAIGYRVERHIMDGDVVIFNRQPSLHKMSMMGHRVRVLPYSTF 410

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            RLNLSVTSPYNADFDGDEMNMHVPQS E+RAE+ E+ MVP+ I+SPQ+N PVMGIVQDTL
Sbjct: 411  RLNLSVTSPYNADFDGDEMNMHVPQSEESRAEIKEICMVPRQIISPQANSPVMGIVQDTL 470

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
               RK T+RD F+ KD+ MNILM   D+DG VP P I+KP+PLWTGKQ+++L IPK IN 
Sbjct: 471  CAIRKFTRRDNFMAKDLVMNILMHIPDWDGTVPTPAIIKPKPLWTGKQIYSLAIPKGINC 530

Query: 592  FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 651
             R  + H DN+   ++ GDT V IE GELL+G +CKKT+  S GSL+HV+  E GP+ A+
Sbjct: 531  LRFHSTHPDNETTFVSPGDTRVIIEDGELLAGIICKKTVDASEGSLVHVVMAERGPEVAK 590

Query: 652  KFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711
            KF   TQ +V+YW LQN FSIGIGDTIAD  TM  +++ I +A + V  +I  AQ+  +E
Sbjct: 591  KFFNTTQRIVDYWFLQNGFSIGIGDTIADDDTMLNVSNIIKEAYDRVDQIIIDAQEDRME 650

Query: 712  PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 771
              PG T  ESFEN+VN+ LN ARD+AG   Q+ L ESNN++ MV AGSKGS+IN+SQMTA
Sbjct: 651  AMPGMTYRESFENRVNKELNRARDQAGKLVQQRLKESNNVRQMVVAGSKGSYINVSQMTA 710

Query: 772  CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 831
             VGQQNVEGKRIPFGF  RTLPHF KDDY P S+GFVENSYLRGLTPQEFFFHAMGGREG
Sbjct: 711  AVGQQNVEGKRIPFGFRYRTLPHFAKDDYSPASKGFVENSYLRGLTPQEFFFHAMGGREG 770

Query: 832  LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL 891
            LIDTAVKT+ETGYIQRRL+KA+ED+MV+YDG+VRNSLG ++QF YGEDGMDS  +E Q++
Sbjct: 771  LIDTAVKTAETGYIQRRLIKALEDLMVQYDGSVRNSLGQIVQFTYGEDGMDSTHLEGQSV 830

Query: 892  DSLKMKKSEFDKAFRFE-MDEENWNPNYMLQ-EYIDDLKTIKELRDVFDAEVQKLEADRY 949
            + ++    +F+  +  + MD E   P+  L+   + +++   E++ V D E ++L+ DR+
Sbjct: 831  NLVRYSDKKFESTYFVDVMDSEKSFPSGTLEFSVLKNVEGNDEVQRVLDDEYEQLKEDRH 890

Query: 950  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1009
             L   IA  G++  P+PVNL RLI NAQ+ F +D R+PS++ P+E+VE + KL + L V+
Sbjct: 891  ILRKFIARDGEARRPMPVNLPRLIKNAQQIFHIDHRKPSNLSPVEIVEKIRKLADSLIVL 950

Query: 1010 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1069
             G D L+ EAQ+NATL F I LRSTF SKRVL+E+ L   A +W+IGEIE+RF +++V P
Sbjct: 951  RGNDSLTREAQQNATLLFQIYLRSTFPSKRVLQEYHLNSNALDWIIGEIETRFKKAIVNP 1010

Query: 1070 GEMIGCVAAQSI 1081
            GEM+G +AAQSI
Sbjct: 1011 GEMVGTLAAQSI 1022


>gi|120561225|gb|ABM26998.1| RNA polymerase II largest subunit, partial [Allomyces macrogynus]
          Length = 1008

 Score = 1163 bits (3008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/1023 (55%), Positives = 743/1023 (72%), Gaps = 33/1023 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELA+P++H+ F+  V  ++  VCF+CSK+L D ++  F++A +I++   R K++   C
Sbjct: 1    HIELARPVYHVSFLPRVKKVLECVCFHCSKLLVDPNNPLFQKARRIKDRNRRFKEVHKLC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEP----LKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKND 197
            K +T+C+  DE     ++GE+P          GCG +QP +  + + +  ++K      +
Sbjct: 61   KTRTECKAADE----PKEGEDPDLPAGYIQASGCGEKQPAIRKKNLTLYVQFKQANHNGE 116

Query: 198  DQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP------- 250
            D +Q     E KQ L+  +VL +LK+ISDEDC+ +GL+P +ARP+WMIL V P       
Sbjct: 117  DGKQ-----EGKQELSPSQVLQILKKISDEDCEAMGLDPVFARPEWMILTVFPVPPPPVR 171

Query: 251  ---IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNE 307
               +     R  DDLT +L  II+ N  L++ E +G P H I +   LLQFH+AT+ DNE
Sbjct: 172  PSILVDGTSRGEDDLTFKLCDIIKANAFLQKAEADGVPGHRIKDHEDLLQFHVATFVDNE 231

Query: 308  LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 367
            + G PRA QRSGRPIK+I SRLK KEGR+RGNLMGKRVDFSARTVIT DP ++IDQ+GVP
Sbjct: 232  ISGMPRAMQRSGRPIKAIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVP 291

Query: 368  WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 427
             SIA NLTYPE VTPYNI +L+ELV  GP   PG   AKY+IRD+G R+DLR++    + 
Sbjct: 292  RSIARNLTYPEIVTPYNINKLQELVHNGPTQHPG---AKYVIRDNGDRVDLRFIGAKGNL 348

Query: 428  HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDG 487
             L+ G+ VERHL+DGD ++FNRQPSLHKMS+MGH++K+MPYSTFRLNLSVTSPYNADFDG
Sbjct: 349  GLQYGWIVERHLDDGDVIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDG 408

Query: 488  DEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
            DEMNMHVPQS E +AE+ +L MVP  I+SPQSN+PVMGIVQDTL G  K T+RDTF++K+
Sbjct: 409  DEMNMHVPQSLEAKAEIQQLCMVPLQIISPQSNKPVMGIVQDTLCGITKFTRRDTFMDKN 468

Query: 548  VFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILT 607
            + MN+LMW  ++DG VP P I+KP+PLWTGKQ+ +L+IPK +N     + H D++   ++
Sbjct: 469  MVMNLLMWVPNWDGNVPPPAIMKPKPLWTGKQILSLVIPK-VNCITHHSTHPDDESTDIS 527

Query: 608  AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 667
             GDT V +E GELL+G +CKKT+G + G L+HV W E GP+AA+  L   Q +VNYWLL 
Sbjct: 528  PGDTRVIVEDGELLAGIVCKKTVGAAAGGLVHVSWMEHGPEAAKALLNGCQTIVNYWLLH 587

Query: 668  NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVN 727
            N FSIGIGDTIAD  TM  IN  I+ A++ VK  I  AQ   L+   G T+ E+FE +VN
Sbjct: 588  NGFSIGIGDTIADDATMAQINKIIASARDTVKQTIHTAQRGQLKAMTGMTLRETFEAQVN 647

Query: 728  QVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 787
            + LN A ++AGS+A KS   SNN+K MV +GSKGS INISQM+ACVGQQNVEGKRIPFGF
Sbjct: 648  RALNEAVNKAGSAAAKSFKVSNNVKQMVVSGSKGSNINISQMSACVGQQNVEGKRIPFGF 707

Query: 788  VDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQR 847
              R+LPHF KDDY PESRGFVENSYLRGL+PQEFFFHAMGGREGLIDTAVKT+ETGYIQR
Sbjct: 708  QYRSLPHFVKDDYSPESRGFVENSYLRGLSPQEFFFHAMGGREGLIDTAVKTAETGYIQR 767

Query: 848  RLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF 907
            RL+KA+EDIMVKYDGTVRN+ G +IQF YGEDGMD   +E+Q L+ L+M    F++ +R 
Sbjct: 768  RLIKALEDIMVKYDGTVRNAQGHIIQFAYGEDGMDGTRVEAQILEPLRMNNHRFERRYRI 827

Query: 908  EMDE----ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
            ++ +    +   P  +      ++++I E++ + D E ++LE DR +L   I   GD+ W
Sbjct: 828  DLTDPEGKKGLKPGSVEFGIQQEMQSI-EVQQLLDQEYRQLEEDRERL-RHIFPRGDARW 885

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNA 1023
            PLP N++R+IWNAQ  FK+D  +PS++HP  VV  V KL ++L V+PG D +SVEAQ+NA
Sbjct: 886  PLPGNIQRIIWNAQNLFKIDKTKPSNLHPEYVVNEVRKLCDKLMVIPGTDKISVEAQRNA 945

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGE 1083
            TL   IL+RST A+KRV++E RL + AF++V+GEI +RF QSLV  GEM+G +AAQSIGE
Sbjct: 946  TLLSQILVRSTLATKRVIEEFRLDKRAFDYVLGEIATRFAQSLVHAGEMVGIIAAQSIGE 1005

Query: 1084 PAT 1086
            PAT
Sbjct: 1006 PAT 1008


>gi|327242113|gb|AEA40835.1| RNA polymerase II largest subunit [Pentatrichomonas hominis]
          Length = 1721

 Score = 1157 bits (2994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 681/1734 (39%), Positives = 979/1734 (56%), Gaps = 176/1734 (10%)

Query: 18   VQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMAECP 77
            + FG+  P+E+++ +  +I   +  E GK   GGLSD R+GT   + +C TC  ++  CP
Sbjct: 14   IDFGLFDPEEVKKFAACEITKPQNYENGKIVTGGLSDLRMGTQSPEYRCRTCGQDLQNCP 73

Query: 78   GHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKI 137
            GHFG++ LA+P FHIGF   V  I++ VC  C ++L    D + +  +     K+R  +I
Sbjct: 74   GHFGYINLAEPFFHIGFSDKVYKILQMVCHKCGRLLVSYSDPEVQYIVTHFKGKDRFTRI 133

Query: 138  LDACKNKT-KCEGGDEIDV-PGQDGE----EPLKKNKGG-----------CGAQQPKLTI 180
             +    KT KC    E +  P Q  E    E   +  GG           C    P++ +
Sbjct: 134  FEKISGKTHKCAHPTEKNKDPSQADEVVDEEFWNRVNGGLNGEHHRVKEPCNEAVPEVAM 193

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             G   +  YK   K ++D             + AERVL + + ISD+D +++G +PK + 
Sbjct: 194  -GKDFLVIYKDGSKTDED------------YIPAERVLNIFENISDQDLRIMGFDPKRSH 240

Query: 241  PDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            P WMIL VLP+PP  VRP            DD+TH+L  +++ NE+L+ Q  NGAP   +
Sbjct: 241  PKWMILTVLPVPPLSVRPQVSSPGQAAPSQDDVTHKLHSLLQTNEHLKLQLANGAPDTAL 300

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
            +E  QLLQ+HI+TYF N+ P   RA  +S RP+K I  RLK KEG IRG+L GKRV+FSA
Sbjct: 301  AEDRQLLQWHISTYFINDKPSMDRAENKSHRPLKVISQRLKGKEGHIRGHLSGKRVNFSA 360

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            R+VI+PDP+I IDQ+GVP  +A  LT+PE VT  N + L+ +V  GP     + GA +II
Sbjct: 361  RSVISPDPSIEIDQVGVPKELAKILTFPEVVTTLNQKWLEGIVAKGPD---AEGGANFII 417

Query: 410  RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
             D G + DL++ +K +  +L  GY VERHL D D V+FNRQPSLHKMS+MGHR  +M   
Sbjct: 418  SDTGTKTDLQFCQKINTQNLSPGYTVERHLRDNDIVIFNRQPSLHKMSMMGHRAFLMSGK 477

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            TFRLNL VT+PYNADFDGDEMN+HVPQS   RAEV  +M VP  I+SPQ+N+P++G+VQD
Sbjct: 478  TFRLNLCVTTPYNADFDGDEMNLHVPQSQTARAEVRHIMAVPYQIISPQANKPIIGLVQD 537

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWW-EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
             LLG R ++ +DTF+ ++  MN++MW   + D  +P P ILKP  LW+GKQ+F+L +P+ 
Sbjct: 538  ALLGSRLLSMKDTFLTRNQVMNLMMWLPNEKDNILPPPCILKPVQLWSGKQIFSLFMPR- 596

Query: 589  INLFRTAAWHADNDKG----ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
            INL   +A + D  +G    ++   D  V I  GELL+G + KKT+     SLIHV+   
Sbjct: 597  INLDAYSA-NVDEKRGDKKTMIPDNDCKVIIRNGELLAGIIDKKTVARGEQSLIHVVINS 655

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
                 A+ FL  TQ +VN WL    FSIG+ D +      E ++  + +   +V   I+ 
Sbjct: 656  YDIKTAKDFLSQTQLIVNNWLEHRGFSIGLIDCVVPKFVTEEVDRALEELDRDVNKEIRG 715

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            A    LEP PG T M++FE  VN  LN    ++    +  +   N+L  M  AGSKG+  
Sbjct: 716  AMSGQLEPAPGMTFMQTFEFNVNSKLNGFLGKSSDIVKAHIRRDNSLIEMNMAGSKGADS 775

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ A V QQN+EGKR+ FGF  RTLPH+ K  YG   RGF ++SY+ GL P EF FH
Sbjct: 776  NISQIIASVAQQNMEGKRVRFGFRMRTLPHYQKGMYGLIERGFCKHSYVEGLEPPEFIFH 835

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AM GR G+IDTA KTS+TGYIQRRL K+ME   V YDGTVRNS+ +V+QF+YG DG+D+ 
Sbjct: 836  AMAGRTGIIDTACKTSDTGYIQRRLCKSMESHHVAYDGTVRNSMNEVVQFIYGGDGLDAT 895

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
             +E+Q L    M   EF + +  E+D+  +  N M Q  IDD++ ++   DV ++E+++L
Sbjct: 896  GLETQNLRLSVMGDREFSEEYEMEVDDATFGQNVMEQRIIDDVQNMQNRHDVLNSEIKRL 955

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPR-RPSDMHPMEVVEAVDKLQ 1003
            +  R  L TEI   G+S   LPVN+ R+I  +Q+   ++     SD++P++V+  VD+  
Sbjct: 956  QDFRQLLQTEIFLKGESKVVLPVNITRIIQTSQQMQGINVHSSKSDLNPIDVIRRVDEKI 1015

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
              L VV G D ++V AQ+NATL   I+L S  ++K+++ +HRL  +AFE+V+G I  RF 
Sbjct: 1016 RSLIVVKGTDAIAVTAQENATLLLRIMLYSNLSAKQIIFKHRLDEKAFEYVLGSISERFY 1075

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            +S+V+PGEM+G +A QSIGEP+TQMTLNTFHYAG+SAK+VTLGVPRL EI+N+AK+IKTP
Sbjct: 1076 RSIVSPGEMVGTIAGQSIGEPSTQMTLNTFHYAGISAKDVTLGVPRLNEIMNLAKQIKTP 1135

Query: 1124 SLSVFLKPGVN---------------STKER----------AKNVQCALEYTTLRSVTEA 1158
             ++V L    N               S ++R          AK+V+  +E    +     
Sbjct: 1136 CVTVILDYNSNNQDDDGSDMDDEEDRSVRQRQNKQELDAALAKDVRANVECAAFKKFVTK 1195

Query: 1159 TEVWYDPDPM-GTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMA 1217
            +E++YDP+P   T I+ED E++  Y      D   +  SPW+LR EL+ + ++   +S+ 
Sbjct: 1196 SEIFYDPEPADNTTIDEDREWIGIYIN-NQLDFNIDNYSPWVLRFELDVKSLLASNVSLP 1254

Query: 1218 AVAEKINQEFDDDL-TCIFNDDNADKL-----ILRIRIMNDEAPKGELNDESAEDDVFLK 1271
             +   I   +  +L   IF  + A+       ++RIR       K    DES   + FL+
Sbjct: 1255 EIQRAIENSYSSELFVSIFEGNMANAASSFPPVIRIRPTKSLVQKNGKTDES---EFFLR 1311

Query: 1272 KIESNMLTEMAL--------------------------------------RGVNLLAVMC 1293
            +IE  +  E A+                                       G  L A++ 
Sbjct: 1312 EIEQQLYDERAISIKGIPGIRRVKIDQKAKRKVLEEDHHWVEKSDPQLITEGTALKAILG 1371

Query: 1294 HEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYR 1353
             + +D + T +N + EI +VLGIEA R +L +E+ +++   G+ +N RHL +L DTMT  
Sbjct: 1372 LDHIDKKLTYTNDINEIYDVLGIEAARNSLCNEMMMIMDNAGASLNRRHLDLLADTMTQY 1431

Query: 1354 GHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGT 1413
            G L  ++RHGINR  TG + R S+E+T+D+  DA  FAE+D +  V+ NI++G+ +  GT
Sbjct: 1432 GRLYPVSRHGINRTGTGTLARASYEQTIDVFFDACSFAETDPMEDVSSNIIVGKPSHAGT 1491

Query: 1414 GDCSLYLNDEML--------KNAIELQL-------------PSYM------EGLEFGMTP 1446
            G    ++N ++L        +N  E +L             P  M      +G ++ M+P
Sbjct: 1492 GIVECFINPKLLPTRQGTIIQNDEEGKLQGVATPVQTMSPGPENMSSLYGDDGGDYTMSP 1551

Query: 1447 -ARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGY 1505
               SP   +P   G MSP   FSP   L+            G A+SP  + G +    GY
Sbjct: 1552 FMTSPFPASPGIGGQMSP---FSPGGGLASPMSPMSPMSPVGEAYSPMVTEGVASPLVGY 1608

Query: 1506 SPSSPGYSPTSPGYSPTSPGYSPTSP-----GYSP-TSPTYSP-SSPGYSPTSPAYSPTS 1558
                 GY  T+   S T+  Y  T+       YSP T  + SP ++  YSP SP  +  +
Sbjct: 1609 ---GGGYIATALSPSVTTQSYENTASPMLTHAYSPLTQSSMSPLAAQQYSPASPLAA--T 1663

Query: 1559 PSYSPTSPS-YSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSP-SYSPTS 1607
              YS +SP+ YSP    Y+P SP+ +       SYSP     SP SP  Y+P +
Sbjct: 1664 SDYSDSSPNGYSPA--RYNPLSPNVNMGGAGPYSYSPNQSPQSPGSPLMYNPKA 1715


>gi|169806355|ref|XP_001827922.1| DNA-directed RNA polymerase II largest subunit [Enterocytozoon
            bieneusi H348]
 gi|161778990|gb|EDQ31017.1| DNA-directed RNA polymerase II largest subunit [Enterocytozoon
            bieneusi H348]
          Length = 1541

 Score = 1157 bits (2993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/1627 (41%), Positives = 945/1627 (58%), Gaps = 163/1627 (10%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANM 73
            K+  + FG+ SP+EI++ SVV + H ET E G PK  GL D R+GT ++   C+TC  NM
Sbjct: 8    KIIGINFGLFSPEEIKKTSVVHVIHPETIENGVPKENGLIDLRMGTTEKNFLCQTCNENM 67

Query: 74   AECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNR 133
             +C GHFGH+EL KPMFHIG++  +  ++  +CF CSKI     D K    LK +     
Sbjct: 68   FDCVGHFGHIELCKPMFHIGYITKIKKLLECICFYCSKI----KDFKL---LKEKTKNYT 120

Query: 134  LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQR 193
            L++  +  K KT C+  +E            K  K GC  +QP +  EGM +IA  K   
Sbjct: 121  LEEAWNILKTKTFCDSENE------------KGEKIGCCNKQPIIKKEGMNLIAFMKG-- 166

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
              NDD        E K  L  E+V  + K+I   + + +G N   +RP+ M++ VL + P
Sbjct: 167  --NDD--------EGKVILNGEKVCNIFKKIDASELKFIGFNVN-SRPENMLITVLLVTP 215

Query: 254  PPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
            P VRPS         DDLTH+ A I++ N  L++ E++GAP HII ++ QLLQFH++T  
Sbjct: 216  PSVRPSILTDGLRSEDDLTHKYADIVKSNACLKKYEQDGAPNHIIRDYEQLLQFHLSTLI 275

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            +NE+ GQP A Q+SGRPIKSI +RLK KEGRIRGNLMGKRVDFSAR+VITPDP I +D++
Sbjct: 276  NNEISGQPIAMQKSGRPIKSISARLKGKEGRIRGNLMGKRVDFSARSVITPDPAIELDEV 335

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP  IA+  T+PE V   NI  L+++V  GP   PG   A Y+IR+DGQR+DL+Y +  
Sbjct: 336  GVPLHIAMIQTFPEKVNSININTLQKMVNNGPTEYPG---ANYVIRNDGQRIDLKYSR-- 390

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  LE G+ VERH+ D D VLFNRQPSLHKMS+MGHR KIM   TFRLNLSVTSPYNAD
Sbjct: 391  FDLKLEKGFIVERHMLDNDIVLFNRQPSLHKMSMMGHRAKIMNNKTFRLNLSVTSPYNAD 450

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+H+PQS+ T++E++ L  V + I+SPQSN+PV+GIVQDTL+G R  T ++TF 
Sbjct: 451  FDGDEMNLHMPQSYNTKSELINLASVSRNIISPQSNKPVIGIVQDTLVGVRLFTLKNTFF 510

Query: 545  EKDVFMNILMWWEDFDGKV------PQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWH 598
             K   MN+L   +  + KV      P   I     LW+G Q+F+ + P + N        
Sbjct: 511  NKRETMNLLFTLDTLEEKVMEIINNPILIIHNKISLWSGLQIFSAVFPNKFNF------- 563

Query: 599  ADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQ 658
              N KG++        I+   L++GTL K T G + G LIHVI  + G   A KF+ + Q
Sbjct: 564  --NYKGVV--------IKNSNLITGTLSKITCGATHGGLIHVICNDYGCLEATKFINNVQ 613

Query: 659  WLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
             L+N+++   N+F+IGIGDTI + + +E     I+ A +NV  LI  A+   LE  PG T
Sbjct: 614  RLINHFMFHINSFTIGIGDTIINPEIIEDCKSNIANAIHNVDELINMAKLGKLEKLPGLT 673

Query: 718  MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
            +  +FE+KVN +LN ARD  G      ++  NN+ AM+ +GSKGS INI+QMT+CVGQQN
Sbjct: 674  IENTFESKVNLILNKARDYKGE-----ITLCNNMNAMILSGSKGSKINIAQMTSCVGQQN 728

Query: 778  VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
            VEGKRIPFGF  RTLPHF K DY   SRGF+ NSYL G+TPQEF+FHAMGGREGLIDTA+
Sbjct: 729  VEGKRIPFGFEKRTLPHFQKFDYSAISRGFISNSYLTGMTPQEFYFHAMGGREGLIDTAI 788

Query: 838  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
            KT+ETGYIQRRLVKAMED +V+ D +VRN  G + QF YGEDG +   +E   L+  K  
Sbjct: 789  KTAETGYIQRRLVKAMEDAVVRSDSSVRNGFGKIYQFAYGEDGFNGKILEKIILN--KPT 846

Query: 898  KSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ-LATEIA 956
            K EF        +    N +++ +E I+ LKT        D E+QKL  + Y  L    +
Sbjct: 847  KDEFYIDINDITNTLRNNKSFIPREVIELLKT--------DVEIQKLNNEYYNYLEQNYS 898

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
               +  +  PVN++R++ N     K++ R   ++ P  + + ++KL              
Sbjct: 899  LLDNGMYVTPVNIQRILLNK----KLNNRIKCNLSPYIIYDEIEKL-------------- 940

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
                K   L +N  +  +   K++L+    T+  F  ++  I+ +  ++ V P EM+G +
Sbjct: 941  ----KTNNLLWNYYVSYSLNPKKLLQTQ--TKSNFMEIVNTIKIKLKEAQVEPNEMVGTL 994

Query: 1077 AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNST 1136
            AAQS+GEPATQMTLNTFH AGV A  +T+GVPRL EIIN  K IKTP + V L+    + 
Sbjct: 995  AAQSVGEPATQMTLNTFHLAGV-ASTITMGVPRLNEIINTTKNIKTPLMIVQLQK---ND 1050

Query: 1137 KERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKIS 1196
             +  KN++  +EY++L+ + E+  + YDP    TI++ED E V++Y+EMPDE I  +K S
Sbjct: 1051 LQSCKNLRNKIEYSSLKDLYESFLLLYDPIITDTILDEDKELVENYFEMPDE-IDLDKCS 1109

Query: 1197 PWLLRIELNREMMVDKKLSMAAVAEKINQE----FDDDLTCIFNDDNADKLILRIRIMND 1252
             + +R ELN+  ++ + L +  + EKI        D  +  I++    +KLILRIR++  
Sbjct: 1110 SFCIRFELNKYHVIGRGLDLEYIIEKIKLNIKSMLDIGIHIIYSLPTDEKLILRIRLI-- 1167

Query: 1253 EAPKGELNDESAEDDVFLKKIESNMLT----------------------EMALRGVNLLA 1290
                  LND+  E+  F  ++   +L                        +   G+N   
Sbjct: 1168 ------LNDKIKENLKFYNELVDKLLNIHIQGLEGIKKAYLIHNKDDTWTLQTDGINYQT 1221

Query: 1291 VMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1350
            ++   +VD   TTSN L EI E LG+EA+R  ++ EL +VI  +GSYVN RHL++L D M
Sbjct: 1222 ILSFPNVDGSHTTSNDLFEIYETLGVEALRETIMTELTMVIENNGSYVNSRHLSLLSDVM 1281

Query: 1351 TYRGHLMAITRHGINRN-DTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLA 1409
            T  G+   ITRHG+NR      + R SFEETVDILL+AA  AE +   G+TENIM+GQLA
Sbjct: 1282 TVCGYPSGITRHGVNREIKASALKRASFEETVDILLEAAATAEENPAHGITENIMMGQLA 1341

Query: 1410 PIGTGDCSLYLNDEMLKNAIELQLPSYME-GLEFGMTPARSPVSGTPYHDGMMSPGY-LF 1467
            P+GTG+  L L+ + L   +     + ++  L    +PA +        + ++S    LF
Sbjct: 1342 PLGTGNIQLILDIKKLDQIVNKAFINTVDKNLIMLNSPAFTEALLIEQENCILSEDIGLF 1401

Query: 1468 SP-NLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGY 1526
            SP +  LS   + +   Y      SP S P    S    +P S      S  Y+P S  +
Sbjct: 1402 SPEHEELSDFNNIKIPEYND----SPNSEPNTYNSLN--TPISSEKVNNSVMYTPNSFYF 1455

Query: 1527 S--PTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1584
            +  P S  +  T+ +Y  +S  Y  ++  +S T  + S     Y   S  Y   S  Y P
Sbjct: 1456 NQQPESIYFPGTNGSYFAASGEYFQSNNFHSNTILN-SGGYQEYMANSNDYDNLSQQYKP 1514

Query: 1585 T-SPSYS 1590
              SP Y+
Sbjct: 1515 IDSPKYN 1521


>gi|120561213|gb|ABM26992.1| RNA polymerase II largest subunit, partial [Capniomyces stellatus]
          Length = 1024

 Score = 1152 bits (2979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/1034 (54%), Positives = 738/1034 (71%), Gaps = 39/1034 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELA+P++H GF+  V  I+ SVC+ CS++ +DE +  F+ A K++N   R+K I + C
Sbjct: 1    HIELARPVYHPGFIIKVKKILESVCWYCSRLKSDETEPGFQIAQKVKNSNRRMKMIWEIC 60

Query: 142  KNKTKCEGGDEID-----------------VPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            K +T CE   E+D                 V G  G     +  GGCG +QP    EG+K
Sbjct: 61   KTRTMCEASAEVDEREVNIGVGEEERNRETVDGMVGGGKRVRGHGGCGHRQPVFRKEGLK 120

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + A +K    +           E KQ L+  +VL VLK+IS ED   +GLN ++ARPDW+
Sbjct: 121  LSAVFKGVVGEEG-------VTEGKQGLSVTQVLQVLKKISREDAVAMGLNVEFARPDWL 173

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            ++ V+P+ P  VRPS          DDLT++L  I++ N  +R  E  GAP HII EF  
Sbjct: 174  VITVMPVAPMSVRPSIQVDATRQSEDDLTYKLNDILKANARVRSCELEGAPLHIIEEFES 233

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT+ +NEL G P+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI 
Sbjct: 234  LLQFHVATFMNNELSGLPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVIA 293

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP I IDQ+GVP SIA NLTYPE VTPYNI++L+E+V+ GP+  PG   AKY+IRD G+
Sbjct: 294  GDPNIEIDQVGVPRSIAKNLTYPEVVTPYNIDKLQEMVQNGPNEHPG---AKYVIRDSGE 350

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLRY K+  D  L++GY+VER+L D D V+FNRQPSLHKMS+MGHR+K+MPYSTFRLN
Sbjct: 351  RIDLRYSKRGGDIPLQIGYRVERNLMDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLN 410

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+H+PQS ETRAE+ EL MVPK IVSPQ+N+PVMGIVQDTL   
Sbjct: 411  LSVTSPYNADFDGDEMNLHLPQSEETRAEIRELCMVPKQIVSPQANKPVMGIVQDTLCAL 470

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
               TKRDT +  D+ M++L+    +DG +P P ILKP+PLW+GKQ+F+LIIPK IN +  
Sbjct: 471  LMFTKRDTLMRLDMVMSLLLKVPGWDGLIPTPCILKPQPLWSGKQIFSLIIPKGINCYTF 530

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
               H DN+    + GD+ V IE GELLSG +CK+T+G   G ++HVI+ E+G +AA+ F 
Sbjct: 531  FKDHPDNETAWCSPGDSRVVIENGELLSGIICKQTVGAVRGGIVHVIFNELGSEAAKIFF 590

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
            G TQ +VN W+L N FSIGIGDTIAD   ME++ + I+++   V  +IK   +  L+  P
Sbjct: 591  GGTQRVVNLWMLSNGFSIGIGDTIADDSAMESVGNIITESYMRVDEMIKDTIEDRLDCLP 650

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G T+ E+FE+  N  LN ARD AG S Q  L E NN++ MV +GSKGS+IN+SQMTA VG
Sbjct: 651  GMTLKETFESGTNLELNRARDLAGKSVQTRLKECNNVRKMVVSGSKGSYINVSQMTAAVG 710

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQNVEG+RIPFGF +RTLPHFTKDDY P+SRGFVENSYLRGLTPQEF+FHAMGGREGLID
Sbjct: 711  QQNVEGRRIPFGFRNRTLPHFTKDDYSPQSRGFVENSYLRGLTPQEFYFHAMGGREGLID 770

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+EDIMV YDGTVRNSLG +I+F YG DGMD+ ++E+Q L +L
Sbjct: 771  TAVKTAETGYIQRRLVKALEDIMVHYDGTVRNSLGSIIEFAYGHDGMDAGYLENQRLTTL 830

Query: 895  KMKKSEFDKAFRFE-MD-EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLA 952
            +   + F+  +R + MD  +++ P+ +    + D++    ++ V D E Q L ADR  L 
Sbjct: 831  RCSDARFEGVYRVDVMDASKSFRPDSLDFSILKDIEANDAVQQVLDDEYQTLLADRRLLQ 890

Query: 953  TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGE 1012
            + I+  G+ S  + VN+ RLI NA++ F +D R+PS++HP+ ++E V +L +RL VV G 
Sbjct: 891  SFISPDGEDSRAMQVNVTRLITNAKQIFSIDNRKPSNLHPVSIIENVRQLIDRLTVVRGN 950

Query: 1013 DPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEM 1072
            D LS+EAQ NA L   I LR+T + KRV++E+ L   AF+WVIGEIE+RF ++LVAPGEM
Sbjct: 951  DKLSIEAQNNAILVLQIHLRATLSPKRVIEEYHLDANAFDWVIGEIETRFKRALVAPGEM 1010

Query: 1073 IGCVAAQSIGEPAT 1086
            +G +AAQSIGEPAT
Sbjct: 1011 VGTLAAQSIGEPAT 1024


>gi|402590450|gb|EJW84380.1| DNA-directed RNA polymerase, partial [Wuchereria bancrofti]
          Length = 1251

 Score = 1150 bits (2976), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 702/1224 (57%), Positives = 855/1224 (69%), Gaps = 94/1224 (7%)

Query: 613  VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSI 672
            V IE GELLSG +C +T+G S G+L+HV+  E+G + A  F  H Q +VN WLL    +I
Sbjct: 1    VIIEHGELLSGIICSRTIGRSAGNLLHVVTLELGWEVAAHFYSHIQTVVNAWLLAEGHTI 60

Query: 673  GIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNT 732
            GIGDTIAD  T   I +TI KAK +V  +I++A +  LEP PG T+ ++FEN VN++LN 
Sbjct: 61   GIGDTIADQATYRDIQETIRKAKLDVVEVIEKAHNDELEPTPGNTLRQTFENMVNRILND 120

Query: 733  ARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTL 792
            ARD  G SAQ+SLSE NN KAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTL
Sbjct: 121  ARDRTGGSAQRSLSEYNNFKAMVVAGSKGSKINISQVIACVGQQNVEGKRIPFGFRHRTL 180

Query: 793  PHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKA 852
            PHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KA
Sbjct: 181  PHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKA 240

Query: 853  MEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEE 912
            ME +MV YDGTVRNSLG ++Q  YGEDG+D +W+E+Q++ S+K   + F+K F+ ++ +E
Sbjct: 241  MESVMVNYDGTVRNSLGQLVQLRYGEDGLDGMWVENQSMPSMKPTNALFEKDFKLDLSDE 300

Query: 913  NWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRL 972
                    +  + +L+   E     +AE  +LE DR +L  +I   GD+   LP NL+R+
Sbjct: 301  KSLRKLYTENVVRELQGSAEALKEVEAEWAQLEEDR-RLLRKIFPKGDAKIVLPCNLQRM 359

Query: 973  IWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 1032
            IWNAQK F+V+ R+P+D++P+ V+E V +L ++L +V GED +S +AQ NATL  NILLR
Sbjct: 360  IWNAQKIFRVELRKPTDLNPLRVIEGVKELSKKLVIVSGEDRISKQAQYNATLLMNILLR 419

Query: 1033 STFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNT 1092
            ST  +KR+ ++HRL  E FEW+IGEIESRF Q++V PGEM+G +AAQS+GEPATQMTLNT
Sbjct: 420  STLCAKRMAEKHRLNSEGFEWLIGEIESRFKQAIVQPGEMVGAIAAQSLGEPATQMTLNT 479

Query: 1093 FHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTL 1152
            FHYAGVSAKNVTLGVPRL+EIINV+KK KTPSL+VFL+       E+AK+V C LE+TTL
Sbjct: 480  FHYAGVSAKNVTLGVPRLKEIINVSKKPKTPSLTVFLQGTAAKDAEKAKDVLCKLEHTTL 539

Query: 1153 RSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDK 1212
            R VT  T ++YDPDP  TIIEED E+V  +YEMPD D  P + SPWLLRIEL+R  M DK
Sbjct: 540  RKVTANTAIYYDPDPKNTIIEEDQEWVNIFYEMPDFD--PSRCSPWLLRIELDRRRMTDK 597

Query: 1213 KLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELND--ESAEDDVFL 1270
            KL+M A+A+KI+Q F DDL  I+ DDNA+KL+ R+RI N E  KG  ++  E  EDDVFL
Sbjct: 598  KLTMEAIADKIHQGFGDDLNVIYTDDNAEKLVFRLRITNQEGDKGNEDEQVERMEDDVFL 657

Query: 1271 KKIESNMLTEMALRGVN----------------------------------------LLA 1290
            + IE+NML+++ L+G+                                         L  
Sbjct: 658  RCIETNMLSDLTLQGIEAITKVYMHKPTTDDKKRVVITPDGGFKAIPEWLLETDGTALAK 717

Query: 1291 VMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1350
            V+  ++VD  RTTSN + EI EVLGIEAVR+A+  E+  VISFDGSYVNYRHLA+LCD M
Sbjct: 718  VLSEQNVDPIRTTSNDICEIFEVLGIEAVRKAIEREMNHVISFDGSYVNYRHLALLCDVM 777

Query: 1351 TYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAP 1410
            T +GHLMAITRHGINR + G +MRCSFEETVDIL++AAV AE D ++GV+ENIMLGQLA 
Sbjct: 778  TAKGHLMAITRHGINRQEVGALMRCSFEETVDILMEAAVHAEQDPVKGVSENIMLGQLAR 837

Query: 1411 IGTGDCSLYLNDEMLKNAIELQ---LPSYMEGLEFG----MTPARSPVSGTPYHDGMMSP 1463
             GTG   L L+ +  K A+E+Q         G+ FG       +    + TP++ G  +P
Sbjct: 838  AGTGCFDLVLDADKCKLAMEIQTGGGLLGTGGMYFGNSMSPASSAMSPAQTPWNAG-TTP 896

Query: 1464 GYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSP-------------------SSPG 1504
             Y        SP T +  +P  GG  FSP+   G+S                    S  G
Sbjct: 897  AY----GAAWSPATGSGMTP--GGAGFSPS---GHSEGGFSPYGGGGSWSPGSPGGSLGG 947

Query: 1505 YSPSSPG-YSPTSPGYSPTSPGYSPTSPGYSPTSPT--YSPSSPGYSPTSPAYSPTSPSY 1561
             SPS  G YSP +  Y     G S  SPGYSPTSP   Y  SSP Y   SP YSPTSPSY
Sbjct: 948  MSPSGAGAYSPAASDYGSGLEGLS--SPGYSPTSPASPYGASSPAYGVMSPRYSPTSPSY 1005

Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
            SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP YSPTSPSYSPTSP+YSPTSP+YSP S
Sbjct: 1006 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPGYSPTSPSYSPTSPSYSPTSPSYSPAS 1065

Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
            P YSP+SP YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSPTSP+YSP SPGYSP+SP YS
Sbjct: 1066 PGYSPSSPRYSPTSPAYSPTSPTYSPTSPAYSPTSPTYSPTSPSYSPASPGYSPSSPRYS 1125

Query: 1682 PTSPTYSPTSPS--------YNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSS 1733
            PTSPTYSPTSP+                  S  Y+PSSP    +  YSPTSP YSP+S  
Sbjct: 1126 PTSPTYSPTSPAYSPSSPQYSPSSPQYSPSSPQYTPSSPAGDASPAYSPTSPQYSPSSPR 1185

Query: 1734 YSPTSPSYSPSSPTYSPSSPYNAG 1757
            YSP+SP YSP+SP YSPSSP  AG
Sbjct: 1186 YSPSSPQYSPTSPQYSPSSPGGAG 1209


>gi|120561231|gb|ABM27001.1| RNA polymerase II largest subunit, partial [Coelomomyces stegomyiae]
          Length = 1014

 Score = 1150 bits (2974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/1029 (55%), Positives = 740/1029 (71%), Gaps = 39/1029 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELAKP++ + F+  V  I+  VCF+CS++L D ++  F++   IR+   R K+I   C
Sbjct: 1    HIELAKPLYQVSFLPRVKKILECVCFHCSRLLVDPENPFFQKLKLIRDRNRRFKEIHKLC 60

Query: 142  KNKTKCEGG---------DEI-DVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKA 191
            K KT+C+           +EI DV     E+   ++  GCG + P +   G+ + A++K 
Sbjct: 61   KAKTECKNDYLEDETKNLNEINDVTSMLNEKTFLQS--GCGQKLPAIRRTGLTLFAQWKQ 118

Query: 192  QRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP- 250
               ++ +QE        KQ L+  +VL +LK+ISD D   LG+ P+++RP+WMIL VLP 
Sbjct: 119  GTGEDSNQEG-------KQQLSPAQVLQILKKISDADADALGMVPEFSRPEWMILTVLPV 171

Query: 251  ---------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIA 301
                     +     R  DDLT++L  +I+ N  L+R E  GAP H I +    LQFH+A
Sbjct: 172  PPPPVRPTILVDGTSRGEDDLTYKLCDVIKANACLQRAEAEGAPGHRIKDHEDFLQFHVA 231

Query: 302  TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 361
            T+ DNE+ G PRA QRSGRPIK+I SRLK KEGR+RGNLMGKRVDFSARTVIT DP ++I
Sbjct: 232  TFVDNEISGLPRAMQRSGRPIKAIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSI 291

Query: 362  DQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYL 421
            D++GVP SIA NLT PE VT YNI  L+ L++ GP   PG   AKY+I+ +G R+DLRY 
Sbjct: 292  DEVGVPRSIARNLTLPEIVTRYNIGHLQALLKNGPSTHPG---AKYVIKSNGDRIDLRYT 348

Query: 422  KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPY 481
                D +L+ G+ VERH+NDGD ++FNRQPSLHKMS+MGH++K+MPYSTFRLNLSVTSPY
Sbjct: 349  GNKGDLNLQYGWIVERHINDGDIIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPY 408

Query: 482  NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRD 541
            NADFDGDEMN+HVPQS E +AE+ +L MVP  IVSPQ N+PVMGIVQDTL G RK T+RD
Sbjct: 409  NADFDGDEMNLHVPQSVEAKAEIQQLCMVPLQIVSPQGNKPVMGIVQDTLCGIRKFTQRD 468

Query: 542  TFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN 601
            TF+ K   M ILMW   +DG VP P ILKP+PLWTGKQ+ +LIIPK +N     + H D+
Sbjct: 469  TFLTKSTVMCILMWVPGWDGNVPIPAILKPKPLWTGKQILSLIIPK-VNCIAFHSTHPDD 527

Query: 602  DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            +K  ++ GDT V +E G LL+G +CKKT+GTS+G L+HVIW E G +A + FL   Q +V
Sbjct: 528  EKTDISPGDTKVIVEDGHLLAGIVCKKTVGTSSGGLVHVIWMEYGSEACKHFLNGCQTIV 587

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWL+ N FSIGIGDTIAD K ME IND I  AKN V  LI +AQ   L+P+PG T+ E+
Sbjct: 588  NYWLIHNGFSIGIGDTIADNKAMEMINDIILAAKNQVSKLIGEAQKDHLKPQPGLTIRET 647

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE +VNQ L+     AG++AQ+S  E NN+K MV AGSKGS+INISQM+ACVGQQNVEGK
Sbjct: 648  FEAEVNQTLSDTVTSAGAAAQRSFKEQNNVKQMVVAGSKGSYINISQMSACVGQQNVEGK 707

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDD+ PESRGFVENSYLRGL PQEFFFHAMGGREGLIDTAVKT+E
Sbjct: 708  RIPFGFKYRTLPHFVKDDHSPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDTAVKTAE 767

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+ED+MVKYDGTVRN+ G++IQF+YGEDGMD++ +E QTLDSL+M  S F
Sbjct: 768  TGYIQRRLVKALEDVMVKYDGTVRNAQGNIIQFVYGEDGMDAIQVEKQTLDSLRMNDSRF 827

Query: 902  DKAFRFE-MDEENWN---PNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIAT 957
            +  +R + MD E      P  +      ++++I +++ + D E  +L+ DR  L  +I  
Sbjct: 828  ESKYRIDVMDIEGKAGLPPGCVEFGIQQEMQSI-DVQKLLDEEFSQLKDDRACL-RKIFL 885

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            +GD++WPLP+NLKR+IWNAQ  FK+D +RPS++HP  VV  V  L ++L V+ G+D +S+
Sbjct: 886  TGDANWPLPMNLKRIIWNAQNLFKIDKQRPSNLHPDYVVNQVRGLCDKLTVIRGDDKISL 945

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQKNATL   IL+RST A++RV++E  L   AF+++IGEI  RF QS V+PGEM+G +A
Sbjct: 946  EAQKNATLLTQILIRSTLATRRVIEEFHLDSRAFDYIIGEITFRFSQSFVSPGEMVGIIA 1005

Query: 1078 AQSIGEPAT 1086
            AQSIGEPAT
Sbjct: 1006 AQSIGEPAT 1014


>gi|120564951|gb|ABM27003.1| RNA polymerase II largest subunit, partial [Chytriomyces hyalinus]
          Length = 1003

 Score = 1145 bits (2962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/1017 (55%), Positives = 726/1017 (71%), Gaps = 26/1017 (2%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELAKP+FH G++  +  I+  VC+NC K+  D  + +FK+ L++ N K +  ++ + C
Sbjct: 1    HIELAKPVFHPGYLAMIKKILECVCYNCGKLKTDVSNERFKRTLRLTNRKLKFNEVWNIC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            K K  CE G++ +   Q     +K N GGCGA+QP    +G+K    +    K + D E 
Sbjct: 61   KAKNVCEAGEDGNPNDQAPGSKVKFNHGGCGAKQPTFRKDGLK----FNMTTKPSKDAEA 116

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIP--------P 253
                    + L  E    + + ISDED   +GL PK+ARP+WMI+ V+P+P         
Sbjct: 117  TT------KVLNGEDCKRIFEMISDEDITNMGLCPKWARPEWMIISVMPVPPMPVRPSVT 170

Query: 254  PPVRPS--DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 311
             P  PS  DDLT  L  I++ N  ++  E++G+PAH+ISEF QLLQ+H+AT  +N+L G 
Sbjct: 171  TPGAPSAEDDLTFALQQIVKSNIQVKSHEQDGSPAHVISEFEQLLQYHVATLMNNQLNGL 230

Query: 312  PRATQR-SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSI 370
            P++TQR SGRP+KSI  RLK KEGR+RGNLMGKRVDFSARTVIT DP +NIDQ+GVP SI
Sbjct: 231  PQSTQRRSGRPLKSIRDRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDQVGVPRSI 290

Query: 371  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 430
            A NLT+PETVTP+NIERL   V+ GP   PG   AKY+IRD+G+R+DLRY K+  D HL+
Sbjct: 291  ARNLTFPETVTPFNIERLMACVQNGPTEHPG---AKYVIRDNGERIDLRYSKRGGDIHLQ 347

Query: 431  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 490
             GYKVERHL D D ++FNRQPSLHKMS+MGHR+K+MPYSTFRLNLSVT+PYNADFDGDEM
Sbjct: 348  TGYKVERHLVDDDLIIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTTPYNADFDGDEM 407

Query: 491  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
            NMHVPQ+ ETRAEV EL MVP+ IVSPQ N P MGIVQD+L G RK TKRD F+ KD  M
Sbjct: 408  NMHVPQTHETRAEVQELCMVPRQIVSPQKNAPCMGIVQDSLCGVRKFTKRDNFLPKDFVM 467

Query: 551  NILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADND-KGILTAG 609
            NILMW  D+DG VP P I+KP PLWTGKQ+ +LIIPK INL    + H D++    ++ G
Sbjct: 468  NILMWVPDWDGVVPTPAIVKPVPLWTGKQMMSLIIPK-INLENFHSQHPDDEPNADVSVG 526

Query: 610  DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
            DT V I+ GE ++G LCKKT+G + G +IHV   E GP+AA++F    Q +VNYW+LQN 
Sbjct: 527  DTKVIIQDGEHIAGILCKKTVGNAGGGIIHVTAMEYGPEAAKRFFHACQVVVNYWMLQNG 586

Query: 670  FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
            FSIGIGDTIAD  TM  I + I  A++ VK +I  A +  L+P PG T+ E+FE  +   
Sbjct: 587  FSIGIGDTIADEATMGNIVNAIQTARDKVKVIIAAAHENKLKPHPGMTIRETFEADIKSE 646

Query: 730  LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
            LN ARD AG SA+KSLSE NN + MV AGSKGS +NISQM ACVGQQ+VEG RIPFGF +
Sbjct: 647  LNRARDSAGKSAEKSLSEHNNARQMVIAGSKGSSVNISQMAACVGQQSVEGNRIPFGFKN 706

Query: 790  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 849
            R+LPHFTKDD+ PE+RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRL
Sbjct: 707  RSLPHFTKDDHSPEARGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRL 766

Query: 850  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM 909
            VKA+ED+M +YDGTVRNS G ++QF YGEDGMD   +E Q  D +     +F+K +R ++
Sbjct: 767  VKALEDVMAQYDGTVRNSAGQIVQFCYGEDGMDGGKVEPQPFDLMNCNNRDFEKKYRVDI 826

Query: 910  DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNL 969
             +  +    + Q+   DL      + + D E + L   R  L  ++  SGDS WPLPVNL
Sbjct: 827  ADPRYKLTSLDQKIAGDLLNDPGSQSLLDGEFKYLAEARRILREDVFPSGDSRWPLPVNL 886

Query: 970  KRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNI 1029
            KRLI NA ++F +D R+P D++P  V++ V  L ++L VV G D LS+ AQ+NATL F I
Sbjct: 887  KRLIANATRSFHIDRRKPVDLNPTVVIQGVQMLLDKLVVVRGYDTLSILAQQNATLLFQI 946

Query: 1030 LLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1086
            LL+ST +S++V+ E++L   AFEW++GEI+ RF Q++V PGEM+G +AAQSIGEPAT
Sbjct: 947  LLKSTLSSRKVIDEYKLNSHAFEWLLGEIDQRFNQAIVHPGEMVGTIAAQSIGEPAT 1003


>gi|120561211|gb|ABM26991.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
          Length = 1025

 Score = 1144 bits (2960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/1036 (54%), Positives = 735/1036 (70%), Gaps = 42/1036 (4%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELA+P+FH GF+  +  I+  VC+ CSK+  DE +  ++ A K++N   RLK + D C
Sbjct: 1    HIELARPVFHPGFVTKIKKILECVCWYCSKLKIDETEVAYQMAQKVKNSNRRLKLVWDVC 60

Query: 142  KNKTKCEGGDEID-----------------VPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            K++  CE   E D                 V G  G +      GGCG +QP    +G+K
Sbjct: 61   KSRMVCEASVEADEREINISRADEDLRREEVEGMLGTKRKALGHGGCGHKQPTFRKDGLK 120

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            + A +K             E  E KQ LT  +VL VLK+ISD D + +G+NP+YARP+W+
Sbjct: 121  LTATFKGVALSGG------EDTEGKQVLTVLQVLQVLKKISDTDVRAIGMNPEYARPEWL 174

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I+ V+P+PP  VRPS          DDLT++L  I++ N  +R  E  GAP HII EF  
Sbjct: 175  IISVMPVPPMCVRPSIQMDATRHSEDDLTYKLNDILKANARVRSCEVEGAPQHIIDEFET 234

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+AT+ +N++ G P+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+
Sbjct: 235  LLQFHVATFINNDISGIPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVIS 294

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP + IDQ+GVP +IA NLTYPE VTPYNI+RL+ELV+ GP   PG   AKY+IRD G+
Sbjct: 295  GDPNLEIDQVGVPKAIAKNLTYPEVVTPYNIDRLQELVQNGPTEHPG---AKYVIRDSGE 351

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DL+Y K+  D  L++GYKVER L D D V+FNRQPSLHKMS+MGHR+K+M YSTFRLN
Sbjct: 352  RIDLKYSKRGGDIPLQIGYKVERSLMDNDVVIFNRQPSLHKMSMMGHRVKVMDYSTFRLN 411

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+H+PQS ETRAEV EL MVPK IVSPQ NRP+MGIVQDTL   
Sbjct: 412  LSVTSPYNADFDGDEMNLHLPQSEETRAEVRELCMVPKQIVSPQGNRPIMGIVQDTLCAM 471

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
               TKRD  +++D+ M++L+    +DG +P P ILKP+PLW+GKQ+++L+IP  IN +  
Sbjct: 472  IMFTKRDNLMKQDLVMDLLLKVPGWDGMIPPPCILKPQPLWSGKQLYSLLIPDGINCYTF 531

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
               H D +    + GDT V +E G LLSG +CK+T+G   G L+H I+ E+GP+A + FL
Sbjct: 532  LKEHPDLETSWSSPGDTRVVVENGVLLSGIVCKQTVGAVRGGLVHTIFNELGPEATKVFL 591

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
            G TQ ++N WL+ N FSIGIGDTI DA TM++++  IS+A   V  +IK   +  ++  P
Sbjct: 592  GGTQRVINQWLVTNGFSIGIGDTITDASTMDSVSKIISEAHRIVDQIIKDCIEDKMKGLP 651

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G T  E+FEN +N  LN AR+ AG S Q  L + NN++ MV +GSKGS+IN+SQMTA VG
Sbjct: 652  GMTYKETFENNINFELNKARENAGKSVQAQLKDCNNVRKMVVSGSKGSYINVSQMTAAVG 711

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQNVEGKRIPFGF DRTLPHFTKDDY P SRGFVENSYL GLTPQEF+FHAMGGREGLID
Sbjct: 712  QQNVEGKRIPFGFRDRTLPHFTKDDYTPHSRGFVENSYLSGLTPQEFYFHAMGGREGLID 771

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+ED+MV YDGTVRNSLG +I+F YG DG D+  +E+Q + S+
Sbjct: 772  TAVKTAETGYIQRRLVKALEDVMVHYDGTVRNSLGAIIEFAYGHDGADASLLENQKVASV 831

Query: 895  KMKKSEFDKAFRFE-MDEENWNPNYMLQEYIDDLKTIKE---LRDVFDAEVQKLEADRYQ 950
            +   + F+K ++ + MD      +  L   I  LKTI+    ++ V DAE Q L  DR  
Sbjct: 832  RCSDARFEKMYKVDVMDPAKSFRSDSLDFSI--LKTIEANDGVQQVLDAEYQTLLTDRKL 889

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
            + T I+ +G+ ++PLPVNL R+I NA++ FK+D R+PS++HP+ +V ++++L +RL VV 
Sbjct: 890  MQTFISPNGEDTFPLPVNLARMITNARQLFKIDSRKPSNLHPVTIVNSINQLIDRLVVVR 949

Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            G DPLS+EAQ NA +   I LRST +SKRV++E  L   AF+WV+GEIE+RF ++LV PG
Sbjct: 950  GSDPLSIEAQNNAVMLLKIHLRSTLSSKRVIEEFHLDSNAFDWVVGEIETRFKRTLVNPG 1009

Query: 1071 EMIGCVAAQSIGEPAT 1086
            EM+G +AAQSIGEPAT
Sbjct: 1010 EMVGTLAAQSIGEPAT 1025


>gi|83320436|gb|ABC02845.1| RNA polymerase II largest subunit, partial [Entomophthora muscae]
          Length = 1007

 Score = 1142 bits (2955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/1021 (53%), Positives = 727/1021 (71%), Gaps = 35/1021 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HLEL +P+FH GF+  V  I+  +C+ C ++ AD+++ KF +AL   N + R K + +AC
Sbjct: 1    HLELCRPVFHCGFIIRVKKILECICYFCGRLKADKENVKFSRALHFSNKQKRFKAVWEAC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEP---LKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDD 198
            K KT C+ G E     Q+ ++P    + +K GCG +QP    E +K+ A +KA +   D 
Sbjct: 61   KTKTICDAGKEYQ-DSQNMDDPTQGAQSSKVGCGHKQPMYRKEALKLYATFKADKHSEDS 119

Query: 199  QEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRP 258
                    + K  +TA+ VL   K+I+D D +++GL+ ++ARP+WM+L  LP+PPP VRP
Sbjct: 120  NS------DEKLVITAQFVLQTFKKITDADLEIMGLSAQFARPEWMVLSNLPVPPPCVRP 173

Query: 259  S----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
            S          DDLTH+L+ II+ N+ L+  E  G P HI+ E+  LLQFH++T+ DN++
Sbjct: 174  SIVVPGMGRGEDDLTHKLSDIIKANDQLKTAEAEGEPTHILDEYEFLLQFHVSTFKDNDV 233

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
             G P ATQ+SGRP+KS+ +RLK KEGRIRGNLMGKRVDFSARTVIT DP ++I+++GVP+
Sbjct: 234  AGLPAATQKSGRPVKSLRARLKGKEGRIRGNLMGKRVDFSARTVITGDPMLSINEVGVPF 293

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIA NLT+PE VT YN E+++ LV  GP   PG   AKY+IRDDG R+DLR+ + + D  
Sbjct: 294  SIARNLTFPEMVTSYNFEKMQNLVRNGPTQHPG---AKYVIRDDGVRIDLRHRRATGDMA 350

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            L++G+ VERH+++GD V+FNRQPSLHKMS+MGH ++++P+STFRLNLSVTSPYNADFDGD
Sbjct: 351  LQVGFCVERHIDNGDVVIFNRQPSLHKMSMMGHHVRVLPFSTFRLNLSVTSPYNADFDGD 410

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMNMHVPQS E R+EVLELMMV K IVSPQ N+PVMGIVQD+L G RK TKRD F+ K+ 
Sbjct: 411  EMNMHVPQSHEARSEVLELMMVSKQIVSPQGNKPVMGIVQDSLCGVRKFTKRDCFLSKEF 470

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
              N+++W  D++G +P P I  P PLWTGKQ+ +L+IP  IN+    A H D++K  ++ 
Sbjct: 471  VQNLVLWIPDWNGYIPPPCIQFPVPLWTGKQLLSLLIPTGINMTTFHAAHPDDEKSYISP 530

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            GDT V I  GE+++G +CK+T+G + G LIH I+ E+G     +FL  TQ LVNYW +QN
Sbjct: 531  GDTRVEIVNGEIIAGIICKRTVGAAAGGLIHTIYNELGEVPTTRFLNGTQTLVNYWFMQN 590

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
            +FSI IGD IAD +TM+ +N +I+ AK  V   I++AQ  +L+P PG T+ E+FE++VNQ
Sbjct: 591  SFSIAIGDMIADRETMKKVNQSIADAKIEVARCIEEAQRGTLQPLPGLTVREAFESRVNQ 650

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
             LN ARD+AG  A++SL E NN+K MV +GSKGSF+NISQM ACVGQQNVE  RIPFGF 
Sbjct: 651  ALNKARDDAGKMAERSLPEYNNIKQMVVSGSKGSFVNISQMAACVGQQNVESARIPFGFQ 710

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
            +RTLPHFTK D GP SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRR
Sbjct: 711  NRTLPHFTKYDQGPVSRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRR 770

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF--- 905
            LVKA+ED+MV YDGTVRNSLG ++QF YGEDGMD+ +IE Q  D+L++   EF+  +   
Sbjct: 771  LVKALEDVMVNYDGTVRNSLGQIVQFCYGEDGMDAAFIEKQRFDNLRLSNLEFENKYLLT 830

Query: 906  -----RFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGD 960
                    +D   ++ +  L   I  L   K L D    E  +L +DR  L   + TSG+
Sbjct: 831  VKPSGELNVDSALFDNDAFLDAGISYLAFNKALAD----EFAQLVSDRNLLRNFVFTSGE 886

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
            + WP+PVN+KRLI NAQ  F     RP+++HP  V+  V++L + L V+ G D LS EA 
Sbjct: 887  NEWPMPVNIKRLIRNAQVMFHCHAHRPTNLHPSLVISTVERLLKGLTVIRGNDALSEEAN 946

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
             NAT+ F +L+RS  ASKRVL+E  LT EAFEW++ EI++RF  +   PGEM+G +AAQS
Sbjct: 947  TNATILFKVLVRSILASKRVLEEFHLTTEAFEWLVAEIQNRFNLAQANPGEMVGTLAAQS 1006

Query: 1081 I 1081
            I
Sbjct: 1007 I 1007


>gi|154414043|ref|XP_001580050.1| RNA polymerase II [Trichomonas vaginalis G3]
 gi|121914263|gb|EAY19064.1| RNA polymerase II [Trichomonas vaginalis G3]
          Length = 1661

 Score = 1138 bits (2944), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/1700 (39%), Positives = 959/1700 (56%), Gaps = 142/1700 (8%)

Query: 11   EVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCT 70
            E   V  + FG+  P++I      +I   +  ++G+   GGLSD R+GT  R+  C+TC 
Sbjct: 10   ESCLVGSIDFGLFDPEKIEMFGACEITENQMMDKGEYVKGGLSDLRMGTQTRERLCDTCG 69

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP 130
             N  +CPGHFG++ LA+P FH+GF+     +++ VC  C ++L    D + +  +     
Sbjct: 70   RNQEDCPGHFGYIRLAEPFFHVGFLPHCYKLLQMVCHKCGRVLCSYSDPEIQYIVTHYKG 129

Query: 131  KNRLKKILDACKNKT-KCEGGDEIDVPGQ---------------DGEEPLKKNKGGCGAQ 174
            KNR  K+ +   +K+ KC+   ++  P +               D      + K  C A 
Sbjct: 130  KNRFLKLFEKIASKSGKCQHSPDLKNPNEPDVCLDERFWELVNGDSHSEHVRVKKPCNAA 189

Query: 175  QPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGL 234
             P +  +G   + + K   K  +D             L+AE VL + + ISD+D +LLG 
Sbjct: 190  VPAIE-QGKDFLIKLKDVSKTEEDY------------LSAEVVLRIFENISDQDVRLLGF 236

Query: 235  NPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNG 283
            NPK + P WMIL++LP+PP  VRP            DD+TH+L+ II  N+ LR Q    
Sbjct: 237  NPKRSHPKWMILKILPVPPLAVRPQVVSPGQSAPSQDDITHKLSDIIICNKRLRAQRSES 296

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGK 343
            +    + E   LLQ+HI TY  N+ P   RA  +SGRP+K I  RLK KEG +RG+L GK
Sbjct: 297  STDTAMKETRTLLQYHITTYMINDKPSIERAVTKSGRPLKVISQRLKGKEGHLRGHLSGK 356

Query: 344  RVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKT 403
            R D+SAR+VI+PDP+I+IDQ+GVP  +A  LT+PE VTP N + L+ +V  G H   G  
Sbjct: 357  RDDYSARSVISPDPSISIDQVGVPEQLAKILTFPEVVTPTNQKWLESIVMKG-HDDLG-- 413

Query: 404  GAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
            GA ++I D G R DL      S   L  GY VERHL D D V+FNRQPSLHKMS+MGHR 
Sbjct: 414  GANFVINDHGTRTDLSCCTDLSTITLSPGYIVERHLRDDDIVIFNRQPSLHKMSMMGHRA 473

Query: 464  KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
             IM   TFRLNL  T+PYNADFDGDEMN+HVPQS   R EV  +M VPK I+SPQ+N+PV
Sbjct: 474  LIMSGRTFRLNLCDTTPYNADFDGDEMNLHVPQSQTARTEVRHIMAVPKQIISPQANKPV 533

Query: 524  MGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW-EDFDGKVPQPTILKPRPLWTGKQVFN 582
            +G+VQD LLGCR ++KRDTF+ ++  MN++MW     D  +P P ILKP  LW+GKQVF+
Sbjct: 534  IGLVQDALLGCRLLSKRDTFLTRNQVMNLMMWLPTTKDTILPPPCILKPVQLWSGKQVFS 593

Query: 583  LIIPK-QINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            L +PK   N +   A   D +   +   D  V I  G LL+G L KKT+  S GSLIHV+
Sbjct: 594  LFLPKISHNSYSQDANKMDQNS--IPLADRHVIIRDGNLLAGILDKKTVARSEGSLIHVV 651

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
                  + A+ FL  TQ +VN WL    FSIG+ D +     ++ +   I   ++ V+  
Sbjct: 652  INSYNTNIAKDFLNQTQLIVNNWLEHRGFSIGLIDCVVPDFVLQEVKHEIDDVESKVQAT 711

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
            I +AQD  LE  PG + M+SFE +VN + N    +        +   N+L  M++AGSKG
Sbjct: 712  IIKAQDGQLERMPGMSYMQSFETEVNNLTNEILSKTYKVINAKIRRDNSLSEMLSAGSKG 771

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            +  N+SQ+   VGQQN+EGKR+ FGF  RTLPHF K +YG   RGF +NSY+ GLTP EF
Sbjct: 772  ADTNMSQIIGVVGQQNMEGKRVKFGFNGRTLPHFQKHEYGLVERGFCKNSYIAGLTPPEF 831

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
             FHAMGGR G+IDTA KTS+TGYIQRRLVK+ME   V YDGTVRNS  +++QF+YG DG+
Sbjct: 832  LFHAMGGRTGIIDTACKTSDTGYIQRRLVKSMESHHVAYDGTVRNSQNEIVQFIYGGDGL 891

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNP----NYMLQEYIDDLKTIKELRDVF 937
            D+  +E+Q L  + +   +F K +    ++  +      +++L E++      K L++  
Sbjct: 892  DATGLETQRLALVTLNDEDFMKKYHLATEDPTFGQVEMDDFVLDEFLKTPNKDKFLKE-- 949

Query: 938  DAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPR-RPSDMHPMEVV 996
              E  +L   R  L  EI  +G ++  +PVN+ R+I ++Q+ F ++     SD++P++++
Sbjct: 950  --EENRLREYREILQKEIFPNGSNTVVVPVNIARIIESSQRQFDINVHVSKSDLNPLDII 1007

Query: 997  EAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIG 1056
              VD+    L VV G D +S   Q+NATL   I+L S  ++K+ + E+RL  +AF++++G
Sbjct: 1008 SRVDECVNSLIVVKGNDNISRTEQENATLLLRIMLYSHLSAKQCIFEYRLNEQAFKYILG 1067

Query: 1057 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1116
             I+ RF +S+VAPGEM+G +A QSIGEP+TQMTLNTFH+AG+SA +VTLGVPRL E++N+
Sbjct: 1068 SIKDRFYRSIVAPGEMVGTIAGQSIGEPSTQMTLNTFHFAGISAHDVTLGVPRLNELMNL 1127

Query: 1117 AKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDV 1176
            AK I+TPS++V  +  V   +E  K V+  +E  + +      E++YDP+P  TIIE D 
Sbjct: 1128 AKHIRTPSVTVEFERDVAKDEEIVKAVRAQIESASFKKFVIKAEIYYDPNPEETIIEPDT 1187

Query: 1177 EFVKSYYEMPD-EDIAPEKISPWLLRIELNREMMVDKKL-SMAAVAEKINQEFDDDLTCI 1234
            +++ +       ED   + ++PW+LR E+NRE M+   + S++ + +KI   + D    I
Sbjct: 1188 KWINTRIRYGGVEDRELQDLAPWVLRFEINREEMIASNIESISDIVQKIKGMYGDKFFVI 1247

Query: 1235 FNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-------- 1286
              DD+A  + ++ R+ +++A       E A D  FL++ E  M     L+G+        
Sbjct: 1248 -GDDDARIIRMQARLKDEQA-------EFAMDVKFLRETEQQMYKSFTLKGIPGISRVKI 1299

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                             ++  + VD   T +N + ++ +VLGIE
Sbjct: 1300 NSAAEKMFLNPETHGFDKEKVSCLYTEGTAFREILSLDHVDTVHTITNDIYQVCDVLGIE 1359

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            A R +L  E+ +++   G+ +N RHL +L DTMT  G L  ++RHGIN+  TG +MR S+
Sbjct: 1360 AARHSLSYEMMLIMENAGAALNRRHLDLLADTMTQYGVLYPVSRHGINKTPTGTLMRASY 1419

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEML---------KNA 1428
            E T D+  DAAVF+E DY+R V+ NI+ G+ +  GTG   + +N+++L         ++ 
Sbjct: 1420 EMTNDVFFDAAVFSEIDYMRDVSSNIIAGKPSRAGTGIVEVLINEDLLPMTKGNNGGEDL 1479

Query: 1429 IELQLPSYM-----EGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSP 1483
            I    PS M     +G         SP    P +D + SP         +SPV+  + SP
Sbjct: 1480 IGPATPSMMISPVPQGYVSQDNIVTSPFQDMPTNDIVQSP---------MSPVSPIE-SP 1529

Query: 1484 YVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPS 1543
              GG A SP      SP   G   ++         YS T P  SP+  G +    T + +
Sbjct: 1530 LNGG-ALSPMLMDAQSPYLYGAENAASPIMTYKQNYSITMP--SPSYQGNAQLLNT-TIT 1585

Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS--YSPT--SPSYSPTSPSYSPTSPSYSPT 1599
               YSP + A SP SP       S SP SP+  Y PT  SP+   ++  Y+P SP   P 
Sbjct: 1586 DHAYSPIAAA-SPLSP--QAMGQSMSPLSPAQQYDPTNFSPAGGFSNTRYNPLSPQTRPM 1642

Query: 1600 SPSYSPTSPAYSPTSPAYSP 1619
              +YSP +   +P SP Y P
Sbjct: 1643 --TYSPNND--TPYSPTYEP 1658


>gi|300122988|emb|CBK23995.2| unnamed protein product [Blastocystis hominis]
          Length = 1828

 Score = 1138 bits (2943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 593/1295 (45%), Positives = 827/1295 (63%), Gaps = 106/1295 (8%)

Query: 10   AEVAKVRMVQFGILSPDEIRQMSVVQ--------IEHGETTERGKPKPGGLSDPRLGTID 61
            A + ++R + FGILSPDE+ + SV          I   E +  GKP  GGL+DPR+GTI 
Sbjct: 9    APLRRIRSIDFGILSPDEVVKNSVTTGIGGEDNGITRVEISANGKPVKGGLNDPRMGTIS 68

Query: 62   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILAD-----E 116
               KCETC  +  +CPGHFGH+ L   +FH GF+  +  ++  +CFNC K L       E
Sbjct: 69   SSGKCETCNRSYEDCPGHFGHIHLNAEIFHTGFLDIIYRVLTCICFNCGKCLVPRGDIPE 128

Query: 117  DDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQP 176
            ++       K+    NR+K I D                          +  GGCG   P
Sbjct: 129  NETDTDNCRKLSRVFNRVKTIKDC------------------------SREHGGCGHAWP 164

Query: 177  KLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
             L    +K++  YK     NDD +++ + +      +   V  + ++IS EDC+ +G N 
Sbjct: 165  HLLSRSLKILITYK-----NDDNQEVSDYI------SPSSVKDLFRKISPEDCRFMGFNY 213

Query: 237  KYARPDWMILQVLPIPPPPVRP-----------SDDLTHQLAMIIRHNENLRRQERNGAP 285
               +P++MIL  +P+PP  VRP            DD+T+ L+ I++ N+ +      G  
Sbjct: 214  PEIKPEYMILSEIPVPPLAVRPPVMLPGSTTPSEDDITYALSNILKANKAISGDRFRGKG 273

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             + + +  ++LQ + + Y DNE    P+A Q++ RP+K+   R+K K GR+RGNLMGKRV
Sbjct: 274  RNGMDDDLEMLQTYYSNYCDNERKNVPQAIQKNKRPLKTFRQRIKGKTGRVRGNLMGKRV 333

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            +FS R+VIT DPTI+ID++GVP S+A  LT+PE VT YNI+ L++LV      P    GA
Sbjct: 334  NFSGRSVITADPTIDIDEVGVPKSLAAILTFPERVTRYNIKELEKLVNQRDKWP----GA 389

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            KYII  DG+R DLRY   +    L+ G  VERH+N+GD VLFNRQPSLHKMSIMGHR+++
Sbjct: 390  KYIIDLDGRRYDLRY--TNGIPQLKEGMIVERHINNGDIVLFNRQPSLHKMSIMGHRVRV 447

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            + YSTFRLNLS T+PYNADFDGDEMN+HVPQ+ + RAEV ELMMV K I+SP+SN PVMG
Sbjct: 448  LNYSTFRLNLSCTTPYNADFDGDEMNIHVPQTVQARAEVTELMMVHKNIISPKSNGPVMG 507

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTIL-----KPRPLWTGKQV 580
            IVQDTLLG +K+T+RDTF+ KD+ MN++MW +DFDG +P P +      K  PLWTGKQ+
Sbjct: 508  IVQDTLLGSQKLTQRDTFVAKDMMMNMVMWVDDFDGNIPIPAVTAHKDGKLVPLWTGKQM 567

Query: 581  FNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLG-TSTGSLIH 639
            ++LI+PK +N+ R +  +  N K  L   D  V IE+GELL G + K ++G T +G + H
Sbjct: 568  YSLILPKDLNIQRFSTPYDKNKKVPLNMMDCEVLIEEGELLMGIIDKNSIGNTKSGGITH 627

Query: 640  VIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVK 699
            V+  + GPDAA+ FLG  Q +VNYWL+   FS+G+GD +   +TM  + D I+KAK  V 
Sbjct: 628  VLMNDRGPDAAKAFLGLNQRMVNYWLMNRGFSVGLGDMVPTPETMNEVMDLIAKAKRKVT 687

Query: 700  NLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGS 759
            +LI+Q Q K LE +PG+T+ + FE  VN  LNT  ++   +  K L   N+L+AM  AGS
Sbjct: 688  SLIQQGQHKQLEKQPGKTIEQYFEWSVNSELNTMANQTQKTIMKHLKSDNSLQAMAVAGS 747

Query: 760  KGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQ 819
            KG+ +N+ Q++ CVGQQNV+GKRI +GF+ RTLPHF KDD G ++ GFV NSYL+GLTPQ
Sbjct: 748  KGAPLNLQQISGCVGQQNVDGKRIAYGFMYRTLPHFCKDDLGADAHGFVVNSYLKGLTPQ 807

Query: 820  EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGED 879
            EF+FHAMGGREG+IDTAVKTS+TGYIQRRL+K+MED+MV YDGTVRNS G ++QFLYGED
Sbjct: 808  EFYFHAMGGREGIIDTAVKTSKTGYIQRRLIKSMEDLMVYYDGTVRNSRGQIVQFLYGED 867

Query: 880  GMDSVWIESQTLDSLKMKKSEFDKAFRFEM-----------DEENWNPNYMLQEYIDDLK 928
            GMDS WIE Q++ +L MK  +  + +R+++            +  W  +  ++    DL 
Sbjct: 868  GMDSRWIEDQSIPTLHMKLRDMTRVYRWDLAYNRLEYCDAVSDRIWMSHEAVETIRKDLD 927

Query: 929  TIKELRDVFDAEVQKLEADRYQLATEIATSGDS-----SWPLPVNLKRLIWNAQKTFKVD 983
            +  EL    D+E  +L  DR  L + I  +         + LPVN+ RLIW A+  F+VD
Sbjct: 928  SQHEL----DSEFNQLLEDRTHLRSIITVTDQKVQDVRVFHLPVNISRLIWTAKTRFRVD 983

Query: 984  PRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKE 1043
            P   SD+ P  V+  V  + +R+ V+     +  E+Q NA L F+I  RS  ASK ++KE
Sbjct: 984  PNGVSDLSPSYVIVQVRDMLKRICVISNRVGMP-ESQDNAKLLFSIFARSMLASKPLMKE 1042

Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
            HRLT +AF+W+I EIE+RF+++ VA GE+ G VAAQSIGEPATQMTLNTFH+AGVSAKNV
Sbjct: 1043 HRLTIKAFDWLIAEIENRFMKAQVAAGEVCGIVAAQSIGEPATQMTLNTFHFAGVSAKNV 1102

Query: 1104 TLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWY 1163
            TLGVPRL EIIN  K+I TP++++ L+  +  ++E A+ +Q  L   TL  V  + E++Y
Sbjct: 1103 TLGVPRLEEIINCVKEISTPTMTLKLRKDLRGSREDAQRIQNTLGLATLDKVISSAEIYY 1162

Query: 1164 DPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKI 1223
            DPDP+ T++++D   VK++++   ED+ P  +S W+LR+ LN++M+V KK+S   +AE+I
Sbjct: 1163 DPDPVNTVVKQDAVLVKNFFDT--EDLNPAMLSSWMLRLVLNQQMIVAKKISPQVIAEQI 1220

Query: 1224 NQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGE 1258
             +     ++ I ++D            ND  P+GE
Sbjct: 1221 KELTGLKISTIASND------------NDSNPRGE 1243


>gi|120561227|gb|ABM26999.1| RNA polymerase II largest subunit, partial [Catenaria anguillulae]
          Length = 1020

 Score = 1137 bits (2942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/1030 (55%), Positives = 736/1030 (71%), Gaps = 35/1030 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELA P++HI F+  V  I+ +VCF+CS++ AD +  +FK+  KIRN   R K++ + C
Sbjct: 1    HIELACPVYHISFLPRVKKILEAVCFHCSRLRADPNAEEFKKVSKIRNRNERFKRMHELC 60

Query: 142  KNKTKCE--------GGDEIDVPGQDG---EEPLKKNKGGCGAQQPKLTIEGMKMIAEYK 190
            K  T C+        GG+  DV G      ++P +    GCG +QP++  + + + A++K
Sbjct: 61   KKVTTCKVDALGDGEGGELGDVYGSRAAHMQDPGRIPLLGCGKKQPQIRKKQLTLSAQWK 120

Query: 191  AQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP 250
                K+DD     E  E K  LT   VL +LK+ISD DC  LGL+P+YARP+WM+L V P
Sbjct: 121  GAAAKDDD----GEIKEGKHDLTPAEVLQILKKISDADCLHLGLDPEYARPEWMLLTVFP 176

Query: 251  ----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHI 300
                      +     R  DDLT++L  I++ N +L++ +  GA  H++ E   LLQFH 
Sbjct: 177  VPPPPVRPSILMDGTSRGEDDLTYKLCDIVKANAHLKKAQEQGATGHMMREHEDLLQFHC 236

Query: 301  ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTIN 360
            AT+ DNE+ G PRA QRSGRPIK+I SRLK KEGR+RGNLMGKRVDFSARTVIT DP ++
Sbjct: 237  ATFVDNEISGMPRANQRSGRPIKAIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLS 296

Query: 361  IDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRY 420
            IDQ+GVP SIA NLTYPE VT +N+ RL+E VE GP   PG   AKY+IR DG R+DLR 
Sbjct: 297  IDQVGVPRSIASNLTYPEMVTRHNVNRLQEAVERGPEEHPG---AKYVIRPDGTRVDLRV 353

Query: 421  LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP 480
               +    L+ G+ VERHL D D ++FNRQPSLHKMS+MGHR+K+MPYSTFRLNLSVTSP
Sbjct: 354  TGVTGAPSLQPGWIVERHLMDDDVIIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSP 413

Query: 481  YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
            YNADFDGDEMN+HVPQS E RAE+ +L MVP  IVSPQSN+PVMGIVQDTL G  K T+R
Sbjct: 414  YNADFDGDEMNLHVPQSVEARAEIQQLCMVPLQIVSPQSNKPVMGIVQDTLCGITKFTRR 473

Query: 541  DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD 600
            DTF+++ + MN+LMW   +DG +P P I+KP+P+WTGKQ+ +LIIPK +N     + H D
Sbjct: 474  DTFMDRAMVMNLLMWVPGWDGNMPPPAIVKPKPMWTGKQIMSLIIPK-VNAVTFHSTHPD 532

Query: 601  NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
             +  +L+ GDT V +E GEL++G +CKKT+GT+ G L+HV W E GP+AA+  L   Q +
Sbjct: 533  GETDLLSPGDTRVIVEDGELVAGIVCKKTVGTAAGGLVHVSWMEHGPEAAKALLNGCQTI 592

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            VNYWLL   FS+GIGDT+AD +T + IN  I  A+  V  +I +AQ   LE + G T+ E
Sbjct: 593  VNYWLLHTGFSVGIGDTVADDETTDLINKMIFDARQRVNEIIGEAQSDKLERQTGMTLRE 652

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FE  VN+ LN A ++AG +A KS    NN+K MV AGSKGS INISQM+ACVGQQNVEG
Sbjct: 653  TFEANVNRTLNEAVNKAGGAAAKSFKVHNNVKHMVVAGSKGSNINISQMSACVGQQNVEG 712

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIPFGF  R+LPHF KDDY PESRGFVENSYLRGL PQEFFFHAMGGREGLIDTAVKT+
Sbjct: 713  KRIPFGFQYRSLPHFVKDDYSPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDTAVKTA 772

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRLVKA+EDIMVKYDGTVRN+ G++IQFLYGEDGMD   +ESQ L+ L+M  S+
Sbjct: 773  ETGYIQRRLVKALEDIMVKYDGTVRNAQGNIIQFLYGEDGMDGTRVESQVLEPLRMSDSK 832

Query: 901  FDKAFRFEMDEENWNPNYMLQEYID--DLKTIK--ELRDVFDAEVQKLEADRYQLATEIA 956
            F+  FR ++ E +  P  +    ++   +K I+  E++D+ D E ++L+ DR QL  ++ 
Sbjct: 833  FETRFRVDVTEPD-TPRGLRSASVEFGIMKEIQTAEVQDLLDDEFRQLQVDRAQL-QQVF 890

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
              GD+ WPLP NL R+IWNAQ  FK+D  +PS++HP  +V +V  L  +L VVPG D LS
Sbjct: 891  KRGDARWPLPGNLNRIIWNAQNMFKLDKSKPSNLHPEHIVASVKSLCTQLVVVPGTDKLS 950

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
             EAQKNAT+   IL+RST A+KRVL+E+ L R AF++V+GEI++RF  + V PGEM+G +
Sbjct: 951  REAQKNATVLMQILVRSTLATKRVLQEYCLDRRAFDYVVGEIKTRFATAQVHPGEMVGII 1010

Query: 1077 AAQSIGEPAT 1086
            AAQSIGEPAT
Sbjct: 1011 AAQSIGEPAT 1020


>gi|120561203|gb|ABM26987.1| RNA polymerase II largest subunit, partial [Taphrina deformans]
          Length = 1001

 Score = 1137 bits (2941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/1020 (55%), Positives = 726/1020 (71%), Gaps = 34/1020 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELAKP+FHIGF+  V  ++  +C+NC K+  D +D KF +  + R+PK ++  +    
Sbjct: 1    HIELAKPVFHIGFITKVKKMLECICWNCGKLKIDANDPKFAETQRFRDPKVKMNAVWQLA 60

Query: 142  KNKTKCE----GGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKND 197
            K K  CE    G   ID   + G +  K N GGCG  QP +  EG+K+   +K   K  D
Sbjct: 61   KMKMICESDVKGEGSIDT--ETGIDMSKSNHGGCGNAQPVIRKEGLKLWGTWK---KSKD 115

Query: 198  DQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVR 257
             +   PE    ++ LT   V  V + I   D   +GL+  YARPDWMI+ VLP+PPP VR
Sbjct: 116  VEGGEPE----RRLLTPMEVHSVFRHIPSVDLVRMGLSENYARPDWMIITVLPVPPPTVR 171

Query: 258  PS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
            PS         DDLT++LA II+ N N+++ E  GAPAH+I EF  LLQ+H+ATY DN++
Sbjct: 172  PSVEQGGMKSHDDLTYKLADIIKANANVKKGEVEGAPAHVIKEFEDLLQYHVATYMDNDI 231

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
             GQP+A Q+SGR IKSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP 
Sbjct: 232  AGQPKALQKSGRAIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 291

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIA  LTYPE VTP+NI +L++LV  GP   PG   AKYI+RD G+R+DLRY K + D  
Sbjct: 292  SIARTLTYPERVTPFNIHKLQQLVRNGPDEHPG---AKYILRDTGERIDLRYNKNAGDTP 348

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            L+ G+ VERHL +GD V+FNRQPSLHKMS+MGHR+++MPYSTFRLNLSVTSPYNADFDGD
Sbjct: 349  LQYGWTVERHLQNGDVVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTSPYNADFDGD 408

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMN+HVPQS ETRAE+ E+ MVP+ I++PQ+N+P MGIVQD L G RK T RDTF+ K  
Sbjct: 409  EMNLHVPQSEETRAEITEICMVPRQILAPQANKPCMGIVQDALCGIRKFTIRDTFMAKSH 468

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
             MNILMW   ++G VP P ILKP+ LWTGKQ+ +++IPK IN  R      D+ +G+   
Sbjct: 469  VMNILMWVPGWNGIVPPPAILKPQQLWTGKQILSMVIPKGINHSRN-----DDKQGLDNP 523

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
             D  + IE GE+L G + KKT+G+S G LIH+I +E G +A R F   TQ +VNYW L N
Sbjct: 524  NDVGMMIEDGEILYGVVNKKTVGSSQGGLIHIIMKEKGWEACRDFFTATQMVVNYWFLHN 583

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDTIAD +TME I + I+KAK  V+ ++  AQ   L+ EPG T+ ESFE  V+Q
Sbjct: 584  GFSIGIGDTIADRQTMEEITNEIAKAKLKVQGIVSDAQLNKLKQEPGMTLRESFEAGVSQ 643

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
            VLN ARD  G +A+ SLS+ N +K MV AGSKGSFINISQM+ACVGQQ VEGKRIP+GF 
Sbjct: 644  VLNGARDTVGKNAESSLSKQNAVKQMVIAGSKGSFINISQMSACVGQQMVEGKRIPYGFK 703

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             RTLPHFTKDDY PESRGFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRR
Sbjct: 704  FRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRR 763

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKA+ED+ VKYDGTVRNSLGD+I F+YGEDG+D+  +E Q LD++++  + F++A+R +
Sbjct: 764  LVKALEDVGVKYDGTVRNSLGDIINFVYGEDGLDAASVEYQVLDTMRLSNAAFEEAYRVD 823

Query: 909  MDEENWN--PNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLP 966
            + + +    P++   E   D+    E++ + D E ++L  DR  L T I  SGDSSWPLP
Sbjct: 824  VTDPDRTIPPSFF--EPGHDIDGDFEVQKLLDQEFKELSEDRRDLQTLIFPSGDSSWPLP 881

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            VNL R+I N+++ F + P R +D+ P ++   V  L  RL +V G D +S E Q+ AT  
Sbjct: 882  VNLDRIILNSKQIFHIAPHRRTDLSPAKIYTGVRDLLSRLIIVRGNDRISKEHQQQATGL 941

Query: 1027 FNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1086
            F IL+R   + +++++ H LT EAF+WVIGEIESRF QS+   GEM G +AAQSIGEPAT
Sbjct: 942  FQILVRMKLSVRKLIEVHHLTSEAFDWVIGEIESRFTQSVAHAGEMCGTLAAQSIGEPAT 1001


>gi|83320426|gb|ABC02840.1| RNA polymerase II largest subunit, partial [Hyaloraphidium curvatum]
          Length = 1002

 Score = 1136 bits (2938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/1018 (55%), Positives = 730/1018 (71%), Gaps = 34/1018 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELA+P+FH+  +  V  I+  VCF C K+  D  +  F Q   I++ K + K++ D  
Sbjct: 1    HIELARPVFHVSLIGKVKKILECVCFECGKLKVDASNPLFAQKRLIKDQKRKFKEVWDLA 60

Query: 142  KNKTKCEGGDEIDVP-GQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
            K    CEGGDE +   G +G+ P KK+ GGCGA QPK+  +G+K++A    +        
Sbjct: 61   KGIMVCEGGDEEEDEFGANGDAPKKKSHGGCGAAQPKIRKDGLKLLAVTTKE-------- 112

Query: 201  QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS- 259
                P + ++ +T  +V  V + ISD+DC+ +GL+P++ARP+WM++ VLP+PPP VRPS 
Sbjct: 113  --SGPRQDRKVITPSKVREVFRVISDQDCRDMGLSPEFARPEWMLVTVLPVPPPQVRPSV 170

Query: 260  ------------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNE 307
                        DDLT +L  I++ N  L+R +   +PAHI  EF ++LQ+H+AT  DN 
Sbjct: 171  SMDGASGGMRSQDDLTFKLGDILKANIALKRHDAENSPAHITREFEEILQYHVATMVDNN 230

Query: 308  LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 367
            + G P+A Q+SGRPIKSI  RLK KEGRIRGNLMGKRVDFS+RTVIT DP I+ID++GVP
Sbjct: 231  ISGMPQAMQKSGRPIKSIRQRLKGKEGRIRGNLMGKRVDFSSRTVITGDPNISIDEVGVP 290

Query: 368  WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 427
             SIA  LT+PE VTP+N+ RL+ELV  G    PG   A YI+R  G R+ L+++ ++ D 
Sbjct: 291  RSIARTLTFPEIVTPHNVARLQELVRNGALEHPG---ANYIVRQSGDRISLKFVPQAGDQ 347

Query: 428  HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDG 487
             L++G  VERHL DGD+V+FNRQPSLHKMS+MGHR+KIMP+STFRLNLSVT+PYNADFDG
Sbjct: 348  PLQIGDTVERHLQDGDYVIFNRQPSLHKMSMMGHRVKIMPFSTFRLNLSVTTPYNADFDG 407

Query: 488  DEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
            DEMN+H PQS+ETRAE+ E+MMVP+ I+SPQ+N+PVMGIVQDT  G RK T RD  + +D
Sbjct: 408  DEMNLHAPQSYETRAEIKEIMMVPRQIISPQANKPVMGIVQDTFCGIRKFTLRDNMMTRD 467

Query: 548  VFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILT 607
            + MNI MW  D+DG+ P P ILKP+PLWTGKQ+ +++IP +IN+    + H D+++  ++
Sbjct: 468  MVMNICMWIPDWDGQPPPPAILKPQPLWTGKQLMSMVIPSRINVTGKHSTHPDDERDNIS 527

Query: 608  AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 667
             GDT V IE G +L+G L K+T+G S G +IHVI  E GP+ A+KF   TQ +VNYWLLQ
Sbjct: 528  PGDTQVVIEDGVVLAGILSKRTVGNSAGGIIHVIMNEYGPEMAKKFFNGTQRVVNYWLLQ 587

Query: 668  NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVN 727
            N FSIGIGDT+AD  TM  IN  + +AK +V   I +AQ   LEP+PG T+ E+FE+ VN
Sbjct: 588  NGFSIGIGDTVADKATMHQINQILKRAKEDVGETIARAQQNQLEPQPGMTIRETFESVVN 647

Query: 728  QVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 787
            ++LN AR++AG +A KSL+  NN K MV AGSKGS INISQM ACVGQQNVEGKRIPFGF
Sbjct: 648  KILNKAREDAGKAATKSLAPFNNAKQMVDAGSKGSEINISQMAACVGQQNVEGKRIPFGF 707

Query: 788  VDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQR 847
              RTLPHFTKDD  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQR
Sbjct: 708  RLRTLPHFTKDDQSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQR 767

Query: 848  RLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF 907
            RLVKA+ED+MVKYDGTVRNSLG VIQF YGEDGMD+V +E Q L+ L+M    F + + F
Sbjct: 768  RLVKALEDVMVKYDGTVRNSLGHVIQFAYGEDGMDAVGVERQDLEILRMSDISFKRRYEF 827

Query: 908  EMDEENWNPNYMLQEYID-DLKTI---KELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
             +   +     +LQ  +  D + +    E ++  D E ++LE DR  L  +I  SG+SSW
Sbjct: 828  NLQGRD---RQLLQRILRPDARALLDWAETQEAVDGEFEQLENDRKVLRKDIFPSGESSW 884

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNA 1023
            PLP NL+RLI NA+  F +  R  +D+ P ++V+ V  L     VVPG D LS +AQ NA
Sbjct: 885  PLPGNLRRLIDNARIQFGLSDRAKTDLLPTKIVQDVRALLAECVVVPGTDGLSRQAQANA 944

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            TL + IL+RST ASKRVL E+RLT EAFE+V+GEI+++F+ + V  GEM+G +AAQSI
Sbjct: 945  TLLWQILVRSTLASKRVLSEYRLTSEAFEFVVGEIKTKFMWAKVQGGEMVGTIAAQSI 1002


>gi|110669635|gb|ABG81912.1| RNA polymerase II largest subunit [Pertusaria dactylina]
          Length = 1015

 Score = 1135 bits (2935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/1038 (55%), Positives = 743/1038 (71%), Gaps = 46/1038 (4%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P+FHIGFM     ++  VC NC KILADE + +  +A + R+PK R 
Sbjct: 1    ECPGHFGHIELAVPVFHIGFMSKTKKLLEVVCHNCGKILADESEPEMAEACRYRDPKKRF 60

Query: 135  KKILDACKNKTKCE----GGDE-IDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEY 189
              I   C+ KT CE    G DE +D P    +EP K + GGCG +QP++  EG+K+   +
Sbjct: 61   NAIWTLCRKKTVCETTVAGDDENMDKP----KEP-KHDHGGCGNRQPQIRREGLKLTGTW 115

Query: 190  KAQR--KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQ 247
            KA++  ++ND Q+   +P+      T +  L + + IS ED + +GL+  YARP+WMI+ 
Sbjct: 116  KAEKGDEENDGQQAEKKPI------TPQMALNIFRHISTEDIKKMGLSNDYARPEWMIIT 169

Query: 248  VLPIPPPP-------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            VLP+PPPP             +R  DDLT++L  IIR N N+RR E  G+PAH+++EF Q
Sbjct: 170  VLPVPPPPVRPSISVDGSGQGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQ 229

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQ+H+ATY DN++ GQP+A Q SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 230  LLQYHVATYMDNDIAGQPQALQSSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVIT 289

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP +++D++GVP SIA  LTYPETVTPYNI +L +LV+ GP+  PG   AKY+IRD G+
Sbjct: 290  GDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPG---AKYVIRDSGE 346

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+ K++ +  L+ G+KVERH+ DGD+++FNRQPSLHK S+MGHR+++MPYSTFRLN
Sbjct: 347  RIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLN 406

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+HVPQS ETRAEV +L MVP  IVSPQ N P+MGIVQDTL G 
Sbjct: 407  LSVTSPYNADFDGDEMNLHVPQSEETRAEVSQLCMVPLNIVSPQRNAPLMGIVQDTLCGI 466

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
             KI +RD F+ K+  MN+L+W  D+DG +PQP I+KPRP WTGKQ+ +L+IP+ +NL R 
Sbjct: 467  YKICRRDVFLTKEQIMNVLLWVPDWDGVIPQPAIIKPRPKWTGKQIISLVIPEGLNLIRK 526

Query: 595  ---AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 651
                ++   ND G+  +G        GEL+ G L KKT+G S+  LIH+I+ E+GP AA 
Sbjct: 527  DKKESFSPINDDGVFVSG--------GELMYGLLNKKTVGASSSGLIHIIYNELGPQAAM 578

Query: 652  KFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711
             F    Q ++NYWLL N FSIGIGDTI D  T++ I + ++K K+ V  L + A +  LE
Sbjct: 579  NFFNGAQTVINYWLLHNGFSIGIGDTIPDRDTIQLIENAVNKRKDEVAELTRSATENELE 638

Query: 712  PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 771
            P PG  + E+FE+KV++ LNTARD+AG+  + SL + NN   M  +GSKGS INISQMTA
Sbjct: 639  PLPGMNVRETFESKVSKALNTARDDAGTVTEDSLKDLNNAIQMARSGSKGSSINISQMTA 698

Query: 772  CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 831
             VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREG
Sbjct: 699  VVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREG 758

Query: 832  LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL 891
            LIDTAVKT+ETGYIQRRLVKAMED+M KYDGTVRNSLGDV+QF+YGEDG+D   IESQ L
Sbjct: 759  LIDTAVKTAETGYIQRRLVKAMEDVMAKYDGTVRNSLGDVVQFVYGEDGLDGGHIESQRL 818

Query: 892  DSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL 951
            D +      F+K FR ++ + +++ +  + E  + +    ++++  D E ++L+A R  L
Sbjct: 819  DIITCSDGHFEKKFRVDLMDPSFSISADVLEQANVIAGDVKVQNYLDEEWEQLKAARTFL 878

Query: 952  ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG 1011
             T   T  +    LP+N+ R++  A+ TFK+     SD+HP +V+  V +L +RL VV G
Sbjct: 879  RTN-KTDENEQLQLPINVLRILETAKTTFKIKDGARSDLHPADVIPQVRELLDRLVVVRG 937

Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
            ED LS E Q NATL F   LRS  A KRV+ E+ L + AF+ V+GEIESRF ++ V PGE
Sbjct: 938  EDALSKEGQHNATLLFKAHLRSRLAFKRVVMEYSLNKLAFQNVLGEIESRFCRAAVNPGE 997

Query: 1072 MIGCVAAQSIGEPATQMT 1089
            M+G +AAQSIGEPATQMT
Sbjct: 998  MVGVLAAQSIGEPATQMT 1015


>gi|110669637|gb|ABG81913.1| RNA polymerase II largest subunit [Lecanora hybocarpa]
          Length = 1016

 Score = 1132 bits (2927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/1037 (54%), Positives = 746/1037 (71%), Gaps = 43/1037 (4%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P+FH+GFM  +  ++ +VC NC KIL DE +  F  AL+ R+PK R 
Sbjct: 1    ECPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKILVDESNPAFVDALRYRDPKRRF 60

Query: 135  KKILDACKNKTKCEGGDEID--VPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQ 192
              +   CK K  CE    +D   P +  +EP K + GGCG  QP++  EG+++   +K Q
Sbjct: 61   DAVWRLCKPKMICETTIAMDDDAPPEKQKEP-KHDHGGCGNIQPEIRREGLRLNGTWKPQ 119

Query: 193  RKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIP 252
            +   +++ Q PE    K+ +T +  L + + I+ ED + +GL+  YARP+WMI+ VLP+P
Sbjct: 120  KGDEENEVQQPE----KKPITPQMALNIFRHITTEDIRRMGLSNDYARPEWMIITVLPVP 175

Query: 253  PPPV------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHI 300
            PPPV            R  DDLT++L  IIR N N+RR E  G+PAH+++EF QLLQFH+
Sbjct: 176  PPPVRPSISVDGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHV 235

Query: 301  ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTIN 360
            ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP ++
Sbjct: 236  ATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLS 295

Query: 361  IDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRY 420
            +D++GVP SIA  LTYPETVTPYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+
Sbjct: 296  LDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG---AKYVIRDSGERIDLRH 352

Query: 421  LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP 480
             K++ +  L+ G+KVERH+ DGD+++FNRQPSLHK S+MGHR+++MPYSTFRLNLSVTSP
Sbjct: 353  HKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSP 412

Query: 481  YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
            YNADFDGDEMN+HVPQS ETRAEV +L MVP  IVSPQ N P+MGIVQDTL G  K+ +R
Sbjct: 413  YNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRR 472

Query: 541  DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA--AWH 598
            D F+ K+  MNIL+W  D+DG +PQP ILKPRP+WTGKQ+ +L+IP  +NL R +   + 
Sbjct: 473  DVFLTKEQVMNILLWVPDWDGVIPQPAILKPRPMWTGKQILSLVIPAGLNLLRGSDEGFS 532

Query: 599  ADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQ 658
              ND G+L +G        GEL+ G L KK++G + G +IH+I+ E GP+AA  F    Q
Sbjct: 533  PLNDDGLLVSG--------GELMYGLLNKKSVGATGGGVIHIIFNEKGPEAAMNFFNGAQ 584

Query: 659  WLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTM 718
             +VNYWLL N FSIGIGDTI D +T++ I + ++  K+ V  + + A D  LE  PG  +
Sbjct: 585  TVVNYWLLHNGFSIGIGDTIPDRETIKRIQNAVTAQKDEVDRITRSATDNELESLPGMNV 644

Query: 719  MESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNV 778
             E+FE+KV++ LN ARDEAG   + SL + NN   M  +GSKGS INISQMTA VGQQ+V
Sbjct: 645  RETFESKVSKALNNARDEAGRVTEDSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSV 704

Query: 779  EGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 838
            EGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVK
Sbjct: 705  EGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 764

Query: 839  TSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
            T+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D V IESQ +D +   K
Sbjct: 765  TAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIESQRVDIITCSK 824

Query: 899  SEFDKAFRFEMD----EENWNPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLA 952
             +FD+ FR ++     E + +P+++ Q  E + D++T    ++V D E ++L A R  L 
Sbjct: 825  KQFDRKFRVDLMGSKPETSISPDFLEQANELVGDVET----QEVLDHEYEQLLAAREFLR 880

Query: 953  TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGE 1012
                   + +  LP+N+ R++  A+ TFK+     S++HP EV+  VD+L +RL +V G+
Sbjct: 881  VN-KQDDNENLQLPINIIRILDTAKTTFKIKNGARSNLHPGEVIPQVDQLLDRLVIVRGD 939

Query: 1013 DPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEM 1072
            D LS E Q NATL F   LRS  A KR++ E+ L + AF+ V+GEIESRF +++V PGEM
Sbjct: 940  DELSKEGQHNATLLFKAQLRSRLAFKRLVMENSLNKLAFQHVLGEIESRFSRAVVNPGEM 999

Query: 1073 IGCVAAQSIGEPATQMT 1089
            +G +AAQSIGEPATQMT
Sbjct: 1000 VGVLAAQSIGEPATQMT 1016


>gi|120561209|gb|ABM26990.1| RNA polymerase II largest subunit, partial [Phragmidium sp. MB]
          Length = 1013

 Score = 1129 bits (2920), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/1025 (56%), Positives = 724/1025 (70%), Gaps = 32/1025 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL--KIRNPKNRLKKILD 139
            H++LA+ ++H+GFM  V  I+  VC  C K+ AD       + L  + ++PK R   +  
Sbjct: 1    HIDLARKVYHVGFMNRVKKILECVCVKCGKLKADIRTDPALELLYRRTKDPKRRFVAVHQ 60

Query: 140  ACKNKTKCEGGDEIDVPGQDGEEPLK------KNKGGCGAQQPKLTIEGMKMIAEYKAQR 193
             C+ K  CE  D  D P  D  E +       K  GGCG  QP++  EG+KM  +Y  ++
Sbjct: 61   LCRGKNICET-DSTDEPPPDHPEDIPPEDQPPKGHGGCGHYQPQIRKEGLKMFLQYTRRK 119

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL---- 249
              +D+          ++ L A     +L +I DED +++GL+ + ARP+WM+L  L    
Sbjct: 120  GDDDEDGGGTLAGTERRPLPAHDAYNILHQIPDEDLRIMGLHTEEARPEWMVLTALPIPP 179

Query: 250  -------PIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT 302
                    +     R  DDLT++LA +I+ N+ L      G+PAHII+EF  LLQ+HIAT
Sbjct: 180  PPVRPSIAMDGGATRGEDDLTYKLAEVIKTNKALGEHILAGSPAHIITEFETLLQWHIAT 239

Query: 303  YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
            Y DN+LPGQP+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP + +D
Sbjct: 240  YMDNDLPGQPQAMQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLD 299

Query: 363  QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK 422
            Q+GVP+SIA NLTYPE VTPYNI  L+ELV+ GP   PG   A+Y+IRD G R+DL+Y  
Sbjct: 300  QVGVPYSIARNLTYPERVTPYNISYLQELVQNGPTEYPG---ARYVIRDTGDRIDLKY-N 355

Query: 423  KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 482
            K +D  L+ G+ VERHL DGD+VLFNRQPSLHKMS+M HRIK+MPYSTFRLNLSVT PYN
Sbjct: 356  KRADTFLQYGWIVERHLKDGDYVLFNRQPSLHKMSMMAHRIKLMPYSTFRLNLSVTPPYN 415

Query: 483  ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 542
            ADFDGDEMN+HVPQS ETRAE+ ++  VP+ IVSPQ+N+PVMGIVQDTL G RK T RD 
Sbjct: 416  ADFDGDEMNLHVPQSEETRAELAQIAWVPRNIVSPQANKPVMGIVQDTLCGVRKFTLRDC 475

Query: 543  FIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADND 602
            F+++D   NIL+W   +DG VP P ILKP+PLWTGKQ+ ++ IPK INLFR      D +
Sbjct: 476  FMDRDFVQNILLWVPGWDGVVPPPAILKPKPLWTGKQILSMCIPKGINLFRD-----DEN 530

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +  +   D  + IE GE++ G + KKT+G S G +IHVI+ E GP+  R      Q +VN
Sbjct: 531  QTSIPVADKGMWIEDGEIIYGVVDKKTVGASQGGIIHVIFREKGPEVTRGLFSGIQMVVN 590

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL + FSIGIGDT+ D  TME I + IS AK  V ++I  AQ+  L PEPG T+ ESF
Sbjct: 591  YWLLHHGFSIGIGDTVPDKATMEAITNFISDAKREVSDVIIAAQEDKLLPEPGMTIRESF 650

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E KVN+ LN ARD AG SA++SL + NN+K MVTAGSKGSFINISQM+ACVGQQ+VEGKR
Sbjct: 651  EAKVNRALNMARDNAGRSAEQSLKDDNNVKQMVTAGSKGSFINISQMSACVGQQSVEGKR 710

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IP+GF  RTLPHFTKDDY PESRGFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ET
Sbjct: 711  IPYGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAET 770

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRL+KA+ED+MV YDGTVRNSLGD++QF+YGEDG+D   +E Q LD +++   +FD
Sbjct: 771  GYIQRRLLKALEDVMVTYDGTVRNSLGDIVQFVYGEDGVDGGTVEYQNLDPVRLSNEKFD 830

Query: 903  KAFRFEM-DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDS 961
            K FR ++ D        +LQ  +DD  +   L+ V D E ++L  DR  L   I T G+ 
Sbjct: 831  KKFRVDVTDPAMTYKAGVLQVGLDD--SSAALQSVLDKEWEQLIKDRKMLREFIFTDGNG 888

Query: 962  SWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQK 1021
              PLPVN++R+I NAQ+ F +D R+PSD+ P ++++ V+ L  RL VV G+D LS  AQ 
Sbjct: 889  RKPLPVNIRRIIQNAQQIFHIDFRKPSDLPPPDIIQMVNDLCNRLIVVRGDDALSRAAQX 948

Query: 1022 NATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            NATL F ILLRS FA++RVL+E  L+REAF WV+GEIE+RF QSL APGEM G +AAQSI
Sbjct: 949  NATLLFRILLRSNFATRRVLEEFHLSREAFVWVLGEIEARFNQSLAAPGEMCGTLAAQSI 1008

Query: 1082 GEPAT 1086
            GEPAT
Sbjct: 1009 GEPAT 1013


>gi|407418760|gb|EKF38234.1| RNA polymerase IIA largest subunit, putative [Trypanosoma cruzi
            marinkellei]
          Length = 1733

 Score = 1129 bits (2919), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 688/1783 (38%), Positives = 991/1783 (55%), Gaps = 162/1783 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
             P S  ++ KV  VQF I    +I+  +V  +EH ++ ERG+P  GG++D R+GT D + 
Sbjct: 7    LPPSQMDLQKVVEVQFEIFKEKQIKDYAVCLVEHAKSYERGQPVRGGINDLRMGTTDFEF 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
             CETC     ECPGHFG+++LA+P+F+IG    VL +++ VC +C  +L D +D +  + 
Sbjct: 67   ACETCHRKHPECPGHFGYIDLAEPVFNIGVFDIVLQVLKCVCKSCGALLMDTNDPQVHKK 126

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            L+     NRL++++  C    KC    +   P    EE +     GCGA QP++     +
Sbjct: 127  LQHLTGVNRLRQVVKMCG--MKCRMSTDATTP----EEAVVAR--GCGATQPRIG----R 174

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
             +  Y     K   +EQ            A+    VL R+SDED +++G +     P  +
Sbjct: 175  YLGIYPTLIIKATLEEQ-------DMVWHADTARQVLDRVSDEDARVMGFDALRCHPRDL 227

Query: 245  ILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
            +L VLP+PPP VRP+         D+LTHQ+  I++ N  LR+ + +   A +    A L
Sbjct: 228  VLTVLPVPPPQVRPAISFGSLKSDDELTHQIMSIVKRNNQLRKDKESDVQAAVDRSRA-L 286

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQ H+ATYF+N             + +KS+  RLK K GR+RGNLMGKRVDFSARTVIT 
Sbjct: 287  LQEHVATYFNNASMYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITG 346

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP I++D++GVP+SIA+ LT+PE V   N +RL E V    +P      A YI   +G  
Sbjct: 347  DPNIDVDEVGVPFSIAMTLTFPERVNAINKKRLTEFVRRPVYP-----SANYIHHPNGTT 401

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
              L   +  S   L +G  VERH+ +GD VLFNRQP+LH+MS+MGHR++++ Y+TFRLNL
Sbjct: 402  TKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNL 461

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            S T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGIVQD+LLG  
Sbjct: 462  SCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSY 521

Query: 536  KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
            ++T +DTF++K    ++ +W + +  ++P P +LKPRPLWTGKQVF+LI+P ++N   T 
Sbjct: 522  RLTDKDTFLDKYFVQSVALWLDLW--QLPVPAVLKPRPLWTGKQVFSLILP-EVNHPATP 578

Query: 596  AWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLG 655
                  ++      D+ + I +G+LL G + K  +G + GSLIHVI+ E G D   +F+ 
Sbjct: 579  -----QERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIHVIFNERGSDEVARFIN 633

Query: 656  HTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPG 715
              Q +  ++L+   FS+G+ DT+ADA T+  +N+ + K + NV+ +   A +++L  + G
Sbjct: 634  GVQRITTFFLINFGFSVGVQDTVADADTLRQMNEVLVKTRENVEKIGAAANNRTLNRKAG 693

Query: 716  RTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQ 775
             T+++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKG+ +NI Q+   VGQ
Sbjct: 694  MTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQ 753

Query: 776  QNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 835
            QNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EFFFH M GREGLIDT
Sbjct: 754  QNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDT 813

Query: 836  AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLK 895
            AVKTS+TGY+QR+L+KA+ED+   YDGTVRN+  ++IQF+YGEDG+D   IE   L  L 
Sbjct: 814  AVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANQELIQFMYGEDGLDGARIEGGQLFPLP 873

Query: 896  MKKS-EFDKAFRFEMDEENWNPNYMLQEYID---------DLKTIKELRDVFDAEVQKLE 945
             + + E +  +++E DE       +   Y+D         D + +++L+  FD    +L 
Sbjct: 874  FRDNKEMESTYKYEYDETGAFNEKVGGAYMDPHVKKMLRADPENVRKLQSEFD----QLM 929

Query: 946  ADR--YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            ADR   +   ++         LPVN+ RLI NA+ T      + S++ P+ +++ V KLQ
Sbjct: 930  ADRDWARRMMDLEEREKLKLNLPVNIGRLIQNARSTMG-KRSQVSNLSPVTIIDHVRKLQ 988

Query: 1004 E-RLKVVP----GEDP-----LSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEW 1053
            E  LK+ P    G D      LS +  +NA   F++ LR   ASKRVL+E++L  +AFE+
Sbjct: 989  EDMLKLFPCYHKGVDGRIHNLLSRQRIENALTLFSVHLRQLLASKRVLREYKLNDKAFEY 1048

Query: 1054 VIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREI 1113
            ++ EI +++LQSLV+PGE IG +AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E+
Sbjct: 1049 LLKEIRTKYLQSLVSPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLEL 1108

Query: 1114 INVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIE 1173
            +NV++  K  S++V L P  +  K  A+  Q  +EY TL SVT+  +  YDPDP  T++E
Sbjct: 1109 LNVSRHQKHASMNVSLYPPWDK-KRTAQQAQHLIEYCTLESVTKRIQFIYDPDPRETVVE 1167

Query: 1174 EDVEFVKSYYEMPDEDIAPEKI------SPWLLRIELNREMMVDKKLSMAAVAEKINQEF 1227
             D   ++  + + DE     ++      SPW+ R+EL+ +M VDK L+M  V + I +  
Sbjct: 1168 ADRAILELEWSVMDESDERARLQEVENGSPWIARLELDADMFVDKALNMKDVKQAILRVD 1227

Query: 1228 DDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVN 1287
            D  +      ++  +  +R+R      PK    ++  +    LK+    +L  + LRG+ 
Sbjct: 1228 DGYVIETGMANDTKERTIRMR------PK---KNDGVDSIPRLKQAIPELLARVHLRGIP 1278

Query: 1288 LLAVMCHED-------------------------------------------VDARRTTS 1304
             +     +D                                           ++A RT+S
Sbjct: 1279 GVRKALLKDRTTFTVDPATGKMTGEKTWLIDTDGTALRRAFIGIVDEKGNNIINATRTSS 1338

Query: 1305 NHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGI 1364
            N + E+  +LGIEA R  +L ELR      G  +NYRH  IL DT+  RG+LMA++R GI
Sbjct: 1339 NKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYRHYTILVDTICQRGYLMAVSRVGI 1398

Query: 1365 NRND-TGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE 1423
            NR++ +GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG  A IGTG   L LN  
Sbjct: 1399 NRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVSANLVLGNQARIGTGLFDLVLNMA 1458

Query: 1424 MLKNAI---ELQLPSYMEGLEFGMTPARSPVSGTPYH--DGMMSPGYLFSPNLRLSPVTD 1478
             L+ A+   +   P     +  G+   ++  S  PY   D   +P            V D
Sbjct: 1459 ALQQAVPQEDAVAPGKDVNVYHGLASTQNLPSSMPYRAKDNEATPF-----------VND 1507

Query: 1479 AQ--FSPYVGGMAFSPTSSPGYSPSSPG--YSPSSPGYSPTSP--GYSPTSPGYSPTSPG 1532
            A   F   VGG   S +++P  + +  G  +  S+  +S   P  G        S  S  
Sbjct: 1508 ASLFFREGVGG---SSSAAPLTASTLYGGMHEASAVHFSQAYPAMGMLDQRVRASSVSQP 1564

Query: 1533 YSPTS--PTYSPSS---PGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1587
            YS  S    Y+P+S   P   P S  YS  S S+   S    P+ PS  P     +    
Sbjct: 1565 YSVMSSASVYNPASMQVPSAFPNSVDYSEAS-SFHLQSSMAMPSVPSSPPFEAPQAFGGS 1623

Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT-SPSYSPTSPSYSPTSPSYS 1646
             +   SP+Y P+  S   T P Y     + S  S +Y PT SP+YS  +   S  +   S
Sbjct: 1624 RFGGLSPAYVPSVMSSVATQP-YQCVGDSESQQSASYVPTLSPAYSAYTARRSVVASRAS 1682

Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSP 1689
             +              SP+Y PTSPG     P     SPT  P
Sbjct: 1683 ASRVDQQAQQQQEEDDSPSYLPTSPGLHGLPPPVGEFSPTEDP 1725


>gi|1143740|gb|AAB50025.1| RNA polymerase II [Trichomonas vaginalis]
          Length = 1661

 Score = 1128 bits (2918), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 660/1695 (38%), Positives = 959/1695 (56%), Gaps = 132/1695 (7%)

Query: 11   EVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCT 70
            E   V  + FG+  P++I      +I   +  ++G+   GGLSD R+GT  R+  C+TC 
Sbjct: 10   ESCLVGSIDFGLFDPEKIEMFGACEITENQMMDKGEYVKGGLSDLRMGTQTRERLCDTCG 69

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP 130
             N  +CPGHFG++ LA+P FH+GF+     +++ VC  C ++L    D + +  +     
Sbjct: 70   RNQEDCPGHFGYIRLAEPFFHVGFLPHCYKLLQMVCHKCGRVLCSYSDPEIQYIVTHYKG 129

Query: 131  KNRLKKILDACKNKT-KCEGGDEIDVPGQ---------------DGEEPLKKNKGGCGAQ 174
            KNR  K+ +   +K+ KC+   ++  P +               D      + K  C A 
Sbjct: 130  KNRFLKLFEKIASKSGKCQHSPDLKNPNEPDVCLDERFWELVNGDSHSEHVRVKKPCNAA 189

Query: 175  QPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGL 234
             P +  +G   + + K   K  +D             L+AE VL + + ISD+D +LLG 
Sbjct: 190  VPAIE-QGKDFLIKLKDVSKTEEDY------------LSAEVVLRIFENISDQDVRLLGF 236

Query: 235  NPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNG 283
            NPK + P WMIL++LP+PP  VRP            DD+TH+L+ II  N+ LR Q    
Sbjct: 237  NPKRSHPKWMILKILPVPPLAVRPQVVSPGQSAPSQDDITHKLSDIIICNKRLRAQRSES 296

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGK 343
            +    + E   LLQ+HI TY  N+ P   RA  +SGRP+K I  RLK KEG +RG+L GK
Sbjct: 297  STDTAMKETRTLLQYHITTYMINDKPSIERAVTKSGRPLKVISQRLKGKEGHLRGHLSGK 356

Query: 344  RVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKT 403
            R D+SAR+VI+PD +I+IDQ+GVP  +A  LT+PE VTP N + L+ +V  G H   G  
Sbjct: 357  RDDYSARSVISPDTSISIDQVGVPEQLAKILTFPEVVTPTNQKWLESIVMKG-HDDLG-- 413

Query: 404  GAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
            GA ++I D G R DL      S   L  GY VERHL D D V+FNRQPSLHKMS+MGHR 
Sbjct: 414  GANFVINDHGTRTDLSCCTDLSTITLSPGYIVERHLRDDDIVIFNRQPSLHKMSMMGHRA 473

Query: 464  KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
             IM   TFRLN   T+PYNADFDGDEMN+HVPQS   R EV  +M VPK I+SPQ+N+PV
Sbjct: 474  LIMSGRTFRLNPCDTTPYNADFDGDEMNLHVPQSQTARTEVRHIMAVPKQIISPQANKPV 533

Query: 524  MGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW-EDFDGKVPQPTILKPRPLWTGKQVFN 582
            +G+VQD LLGCR ++KRDTF+ ++  MN++MW     D  +P P ILKP  LW+GKQVF+
Sbjct: 534  IGLVQDALLGCRLLSKRDTFLTRNQVMNLMMWLPTTKDTILPPPCILKPVQLWSGKQVFS 593

Query: 583  LIIPK-QINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            L +PK   N +   A   D +   +   D  V I  G LL+G L KKT+  S GSLIHV+
Sbjct: 594  LFLPKISHNSYSQDANKMDQNS--IPLADRHVIIRDGNLLAGILGKKTVARSEGSLIHVV 651

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
                  + A+ FL  TQ +VN WL    FSIG+ D +     ++ +   I   ++ V+  
Sbjct: 652  INSYNTNIAKDFLNQTQLIVNNWLEHRGFSIGLIDCVVPDFVLQEVKHEIDDVESKVQAT 711

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
            I +AQD  LE  PG + M+SFE +VN + N    +        +   N+L  M++AGSKG
Sbjct: 712  IIKAQDGQLERMPGMSYMQSFETEVNNLTNEILSKTYKVINAKIRGDNSLSEMLSAGSKG 771

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            +  N+SQ+   VGQQN+EGKR+ FGF  RTLPHF K +YG   RGF +NSY+ GLTP EF
Sbjct: 772  ADTNMSQIIGVVGQQNMEGKRVKFGFNGRTLPHFQKHEYGLVERGFCKNSYIAGLTPPEF 831

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
             FHAMGGR G+IDTA KTS+TGYIQRRLVK+ME   V YDGTVRNS  +++QF+YG DG+
Sbjct: 832  LFHAMGGRTGIIDTACKTSDTGYIQRRLVKSMESHHVAYDGTVRNSQNEIVQFIYGGDGL 891

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNP----NYMLQEYIDDLKTIKELRDVF 937
            D+  +E+Q L  + +   +F K +    ++  +      +++L E++      K L++  
Sbjct: 892  DATGLETQRLALVTLNDEDFMKKYHLATEDPTFGQVEMDDFVLDEFLKTPNKDKFLKE-- 949

Query: 938  DAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPR-RPSDMHPMEVV 996
              E  +L   R  L  EI  +G ++  +PVN+ R+I ++Q+ F ++     SD++P++++
Sbjct: 950  --EENRLREYREILQKEIFPNGSNTVVVPVNIARIIESSQRQFDINVHVSKSDLNPLDII 1007

Query: 997  EAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIG 1056
              VD+    L VV G D +S   Q+NATL   I+L S  ++K+ + E+RL  +AF++++G
Sbjct: 1008 SRVDECVNSLIVVKGNDNISRTEQENATLLLRIMLYSHLSAKQCIFEYRLNEQAFKYILG 1067

Query: 1057 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1116
             I+ RF +S+VAPGEM+G +A QSIGEP+TQMTLNTFH+AG+SA +VTLGVPRL E++N+
Sbjct: 1068 SIKDRFYRSIVAPGEMVGTIAGQSIGEPSTQMTLNTFHFAGISAHDVTLGVPRLNELMNL 1127

Query: 1117 AKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDV 1176
            AK I+TPS++V  +  V   +E  K V+  +E  + +      E++YDP+P  TIIE D 
Sbjct: 1128 AKHIRTPSVTVEFERDVAKDEEIVKAVRAQIESASFKKFVIKAEIYYDPNPEETIIEPDT 1187

Query: 1177 EFVKSYYEMPD-EDIAPEKISPWLLRIELNREMMVDKKL-SMAAVAEKINQEFDDDLTCI 1234
            +++ +       ED   + ++PW+LR E+NRE M+   + S++ + +KI   + D    I
Sbjct: 1188 KWINTRIRYGGVEDRELQDLAPWVLRFEINREEMIASNIESISDIVQKIKGMYGDKFFVI 1247

Query: 1235 FNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-------- 1286
              DD+A  + ++ R+ +++A       E A D  FL++ E  M     L+G+        
Sbjct: 1248 -GDDDARIIRMQARLKDEQA-------EFAMDVKFLRETEQQMYKSFTLKGIPGISRVKI 1299

Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
                                             ++  + VD   T +N + ++ +VLGIE
Sbjct: 1300 NSAAEKMFLNPETHGFDKEKVSCLYTEGTAFREILSLDHVDTVHTITNDIYQVCDVLGIE 1359

Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
            A R +L  E+ +++   G+ +N RHL +L DTMT  G L  ++RHGIN+  TG +MR S+
Sbjct: 1360 AARHSLSYEMMLIMEKAGAALNRRHLDLLADTMTQYGVLYPVSRHGINKTPTGTLMRASY 1419

Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEML---------KNA 1428
            E T D+  DAAVF+E DY+R V+ NI+ G+ +  GTG   + +N+++L         ++ 
Sbjct: 1420 EMTNDVFFDAAVFSEIDYMRDVSSNIIAGKPSRAGTGIVEVLINEDLLPMTKGNNGGEDL 1479

Query: 1429 IELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGM 1488
            I    PS M         ++  +  +P+ D M++   + SP   +SPV+  + SP  GG 
Sbjct: 1480 IGPATPSMMISPVPQGYVSQDNIVTSPFQD-MLTNDIVQSP---MSPVSPIE-SPLNGG- 1533

Query: 1489 AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1548
            A SP      SP   G   ++         YS T P  SP+  G +    T + +   YS
Sbjct: 1534 ALSPMLMDAQSPYLYGAENAASPIMTYKQNYSITMP--SPSYQGNAQLLNT-TITDHAYS 1590

Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPS--YSPT--SPSYSPTSPSYSPTSPSYSPTSPSYS 1604
            P + A SP SP       S SP SP+  Y PT  SP+    +  Y+P SP   P   +YS
Sbjct: 1591 PIAAA-SPLSP--QAMGQSMSPLSPAQQYDPTNFSPAGGFFNTRYNPLSPQTRPM--TYS 1645

Query: 1605 PTSPAYSPTSPAYSP 1619
            P +   +P SP Y P
Sbjct: 1646 PNND--TPYSPTYEP 1658


>gi|45439293|gb|AAS64314.1| DNA-dependent RNA polymerase II largest subunit [Amanita phalloides]
          Length = 1007

 Score = 1127 bits (2915), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/1026 (55%), Positives = 732/1026 (71%), Gaps = 40/1026 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK-IRNPKNRLKKILDA 140
            H+ELA+P+FH GF+  V  I+ S+C NC K+ AD  D  F   ++ IR+PK R+  + + 
Sbjct: 1    HIELARPVFHPGFIVKVKKILESICVNCGKLKADIMDPNFADKIRHIRDPKARMAVVWNH 60

Query: 141  CKNKTKCEGGDEIDVPGQDGE--EPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDD 198
            CK K  CE  +     G +GE  EP KK  GGCG  QP++  EG+K+   YK   K  DD
Sbjct: 61   CKTKMGCEPDEPPKEDGAEGENDEP-KKGHGGCGHVQPQIRKEGLKLFVHYK---KTKDD 116

Query: 199  QEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV---------- 248
             E +      K+  T   V    K++SD D  LLGL+ +YARP+WMIL V          
Sbjct: 117  DEDMKSLQPEKRPFTPSEVYTTFKKMSDSDLHLLGLSDEYARPEWMILTVLPVPPPPVRP 176

Query: 249  -LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNE 307
             + +    +R  DDLT++L  II+ + N+RR E+ GAPAH+I+EF QLLQFH+ATY DN+
Sbjct: 177  SIAVDGGTMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVINEFEQLLQFHVATYMDND 236

Query: 308  LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 367
            + G P+A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT DP + +D++GVP
Sbjct: 237  IAGVPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVP 296

Query: 368  WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 427
             SIA+NLTYPE VTPYNI  L+ELV  GP   PG   A+Y++RD G+R+DLRY  K +D 
Sbjct: 297  RSIAMNLTYPERVTPYNIGYLQELVRNGPTAYPG---ARYVVRDTGERIDLRY-NKRADA 352

Query: 428  HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDG 487
            HL+ G+ VERHL DGDFVLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVT PYNADFDG
Sbjct: 353  HLQYGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDG 412

Query: 488  DEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
            DEMNMH+PQS ETRAE+ ++  VP+ I+SPQ+N+PVMGIVQDTL G RK+T RDTF++ +
Sbjct: 413  DEMNMHIPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKLTLRDTFLDWN 472

Query: 548  VFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKG 604
               NIL+W  D+DG VP P ILKP+PLW+GKQ+ ++ IP+ IN+ R+    + N   D G
Sbjct: 473  QVQNILLWVPDWDGSVPIPAILKPKPLWSGKQILSMTIPRGINIHRSPDPKSSNPVFDDG 532

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            ++        IE GE++ G + KKT+G S G L+HV++ E GP+A R  L   Q +VNYW
Sbjct: 533  MM--------IENGEIIFGIVEKKTVGASQGGLVHVVFREKGPEATRMLLTGIQMVVNYW 584

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            L  N FSIGIGDTI D  TM  I  +I   K+NV  LI+ A    L+ +PG T+ ESFE+
Sbjct: 585  LFHNGFSIGIGDTIVDLPTMAYIRKSIQDRKSNVAKLIEDAIHDHLKAKPGMTLRESFES 644

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
               + LN ARD +G  AQ+ + E NN+K MV AGSKGSFINISQM+ CVGQQ+VEG+RIP
Sbjct: 645  MAERELNLARDRSGKYAQEHMKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGRRIP 704

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF  R+LPHFTKDD+GP++RGFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 705  FGFRHRSLPHFTKDDFGPDARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 764

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+ED+MV YDGTVRNSLGD+IQF+YGEDGMD  +IE QT++   +   EF+  
Sbjct: 765  IQRRLVKALEDVMVCYDGTVRNSLGDLIQFIYGEDGMDGAFIEKQTIEXFGLNDKEFEHN 824

Query: 905  FRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSS 962
            +R ++ +    + P  +LQ  IDD  +  EL+   D E  +L  DR  L   I     +S
Sbjct: 825  YRVDVTDPAGGFLPG-VLQVGIDD--SSLELQAKLDEEYNQLVTDRRTLRKFIFPRAPTS 881

Query: 963  WP--LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
             P  LPVNL R++ NA + F +D R+PSD+ P  +V+AV +  +RL VV G+DPLS+EAQ
Sbjct: 882  LPHYLPVNLFRIVQNALQIFHIDRRKPSDLDPAYIVDAVREQCKRLIVVRGDDPLSLEAQ 941

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            +N++L F + LR+TFAS+RVL+   LTREAF+WV+GE+ES+F QSLV PGEM G +AAQS
Sbjct: 942  ENSSLMFRMHLRATFASRRVLERFHLTREAFDWVLGEVESKFNQSLVHPGEMCGTLAAQS 1001

Query: 1081 IGEPAT 1086
            IGEPAT
Sbjct: 1002 IGEPAT 1007


>gi|113957551|gb|ABI49122.1| RNA polymerase II largest subunit [Pleopsidium gobiense]
          Length = 1017

 Score = 1126 bits (2912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 566/1033 (54%), Positives = 732/1033 (70%), Gaps = 34/1033 (3%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH-KFKQALKIRNPKNR 133
            ECPGHFGH+ELA P+FH+GFM  +  ++ +VC NC KIL DE D+  F  AL+ R+PK R
Sbjct: 1    ECPGHFGHIELATPVFHVGFMTKIKKLLETVCHNCGKILVDEHDNPAFADALRYRDPKRR 60

Query: 134  LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK----GGCGAQQPKLTIEGMKMIAEY 189
               I   CK K  CE     D     G +P K  K    GGCG  QP++  EG+++   +
Sbjct: 61   FDAIWRLCKPKLVCETSTVED--SDYGSKPEKGKKISKHGGCGNLQPEVRREGLRLTGTW 118

Query: 190  KAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL 249
            KAQ+   +++ Q PE    K+ +T +  L + + IS E+ + +GL+  YARP+WMI+ VL
Sbjct: 119  KAQKGDEENETQQPE----KKPITPQMALNIFRHISTEEIKNMGLSNDYARPEWMIITVL 174

Query: 250  PIPPPP-------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLL 296
            P+PPPP             +R  DDLT++L  IIR N N+RR E+ G+PAH++SEF  LL
Sbjct: 175  PVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANGNVRRCEQEGSPAHVVSEFEALL 234

Query: 297  QFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPD 356
            QFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT D
Sbjct: 235  QFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGD 294

Query: 357  PTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRL 416
            P I++D++GVP SIA  LTYPETVTPYNI +L +LV+ GP+  PG   AKY+IRD G+R+
Sbjct: 295  PNISLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPG---AKYVIRDSGERI 351

Query: 417  DLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLS 476
            DLR+ K++ +  L+ G+KVERH+ DGD+++FNRQPSLHK S+MGHR+++MPYSTFRLNLS
Sbjct: 352  DLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLS 411

Query: 477  VTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRK 536
            VTSPYNADFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  K
Sbjct: 412  VTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYK 471

Query: 537  ITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAA 596
            + +RD F+ K+  MNIL+W  D+DG +PQP ILKPRP WTGKQ+ +L+IPK +NL R + 
Sbjct: 472  MCRRDVFLTKEQVMNILLWVPDWDGVIPQPAILKPRPTWTGKQIVSLVIPKGLNLIRGS- 530

Query: 597  WHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGH 656
                 ++G+  A D  + +  GEL+ G   KK++G S G +IH+I+ E GP+ A  F   
Sbjct: 531  -----EEGLSPANDDGLFVHGGELMYGLFSKKSVGASGGGIIHIIFNEKGPEVAMNFFNG 585

Query: 657  TQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR 716
             Q +VNYWLL N FSIGIGDTI D  T+  I + +++ K +V  + + A +  LEP PG 
Sbjct: 586  AQTVVNYWLLHNGFSIGIGDTIPDRNTIRQIENAVNRQKADVAEITRSATENELEPLPGM 645

Query: 717  TMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 776
             + E+FE+KV++ LN ARDEAG+  +KSL + NN   M  +GSKGS INISQMTA VGQQ
Sbjct: 646  NVRETFESKVSKALNAARDEAGAETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQQ 705

Query: 777  NVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 836
            +VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTA
Sbjct: 706  SVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTA 765

Query: 837  VKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKM 896
            VKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D   IE+Q +D++  
Sbjct: 766  VKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGSHIEAQRVDTIAC 825

Query: 897  KKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIA 956
               +F+K FR ++ +        + E   D+    E++   D E ++L+ DR  L     
Sbjct: 826  SDKQFEKKFRVDLMDPKAGIAPDVLELAADIAGDVEVQQYLDEEWEQLKLDRAFLRKN-K 884

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
                    LP+N+ R++  A+ TF++     SD+HP+ V+ AV  L +RL VV G+D LS
Sbjct: 885  QDDTEQMQLPINILRILETAKTTFRIKDGARSDLHPIVVIPAVRDLLDRLVVVRGDDKLS 944

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
             EAQ NATL F   LRS  A KRV+ E+ L + AF+ V+GEIESRF ++ V PGEM+G +
Sbjct: 945  KEAQDNATLLFKAHLRSRLAFKRVVTEYSLNKLAFQHVLGEIESRFCRAAVNPGEMVGVL 1004

Query: 1077 AAQSIGEPATQMT 1089
            AAQSIGEPATQMT
Sbjct: 1005 AAQSIGEPATQMT 1017


>gi|110669641|gb|ABG81915.1| RNA polymerase II largest subunit [Umbilicaria mammulata]
          Length = 1014

 Score = 1124 bits (2908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 563/1030 (54%), Positives = 734/1030 (71%), Gaps = 35/1030 (3%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P+FH+GFM  +  ++ +VC NC KIL DE    F  AL+ R+PK R 
Sbjct: 1    ECPGHFGHIELATPVFHVGFMTKIKKLLETVCHNCGKILVDESTAAFADALRFRDPKRRF 60

Query: 135  KKILDACKNKTKCEGGDEIDVPG----QDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYK 190
              I   CK K  CE    + VP     +D +EP K + GGCG  QP++  EG+K+   +K
Sbjct: 61   DAIWRLCKPKMVCE---TMAVPDDDSLKDSKEP-KHDHGGCGNIQPEVRREGLKLTGTWK 116

Query: 191  AQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP 250
            AQ+   +++ Q PE    K+ +T +  L + + IS E+ + +GL+  YARP+WMI+ VLP
Sbjct: 117  AQKGDEENEGQHPE----KKPITPQMALNIFRHISTEEIRKMGLSNDYARPEWMIITVLP 172

Query: 251  IPPPP-------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
            +PPPP             +R  DDLT++L  IIR N N+RR E  G+PAH++SEF  LLQ
Sbjct: 173  VPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVSEFESLLQ 232

Query: 298  FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
            FH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP
Sbjct: 233  FHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDP 292

Query: 358  TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
             +++D++GVP SIA  LTYPETVTPYNI++L +LV+ GP+  PG   AKY+IRD G+R+D
Sbjct: 293  NLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG---AKYVIRDSGERID 349

Query: 418  LRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 477
            LR+ K++ +  L+ G+KVERH+ DGD+++FNRQPSLHK S+MGHR++++PYSTFRLNLSV
Sbjct: 350  LRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHRVRVVPYSTFRLNLSV 409

Query: 478  TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
            TSPYNADFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  K+
Sbjct: 410  TSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKM 469

Query: 538  TKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAW 597
             +RD F+ KD  MNIL+W  D+DG +PQP ILKPRP WTGKQ+ +L+IP  +NL RT+  
Sbjct: 470  CRRDVFLTKDQVMNILLWVPDWDGVIPQPAILKPRPKWTGKQLISLVIPAGLNLIRTS-- 527

Query: 598  HADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHT 657
                ++G+  A D  + +  GEL+ G L KK++G S G +IH+I+ E GP+AA  F    
Sbjct: 528  ----EEGLSPANDDGLFVHGGELMYGLLSKKSVGASAGGIIHIIFNEKGPEAAMNFFNGA 583

Query: 658  QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
            Q +VNYWLL N FSIGIGDTI D  T++ I D ++  K +V  + + A +  LEP PG  
Sbjct: 584  QTVVNYWLLHNGFSIGIGDTIPDRHTIQQIEDAVNNQKADVAEITRSATENELEPLPGMN 643

Query: 718  MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
            + E+FE+KV++ LN ARD+AG+  ++SL + NN   M  +GSKGS INISQMTA VGQQ+
Sbjct: 644  VRETFESKVSKALNKARDDAGTKTEESLKDLNNAIQMARSGSKGSTINISQMTAVVGQQS 703

Query: 778  VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
            VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAV
Sbjct: 704  VEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 763

Query: 838  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
            KT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D V IE+Q LD +   
Sbjct: 764  KTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFIYGEDGLDGVHIEAQRLDIITCS 823

Query: 898  KSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIAT 957
              +F+K FR ++ +     +  + +  +++    +++   D E  +L+A R  L      
Sbjct: 824  DDQFEKKFRVDLMDPKAGISPGILDQANEIAGDVKVQSYLDEEWDQLKAARAFLRKN-KQ 882

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
              +    LP+N+ R++  A+ TF++     SD+HP EV+  V  L +RL VV G+D LS 
Sbjct: 883  DDNEQLQLPINVLRILDTAKTTFRIKDGARSDLHPAEVIPQVKDLLDRLVVVRGDDVLSK 942

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            E Q NATL F   LRS  A KRV+ E+ L + AF+ V+GEIESRF ++ V PGEM+G +A
Sbjct: 943  EGQHNATLLFKAHLRSRLAFKRVVTEYSLNKLAFQHVLGEIESRFCRATVNPGEMVGVLA 1002

Query: 1078 AQSIGEPATQ 1087
            AQSIGEPATQ
Sbjct: 1003 AQSIGEPATQ 1012


>gi|110669614|gb|ABG81902.1| RNA polymerase II largest subunit [Canoparmelia caroliniana]
          Length = 1016

 Score = 1124 bits (2908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 567/1037 (54%), Positives = 740/1037 (71%), Gaps = 43/1037 (4%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P++H+GFM  +  ++ +VC NC KIL DE +  F  A++ R+PK R 
Sbjct: 1    ECPGHFGHIELAVPVYHVGFMTKIKKLLETVCHNCGKILVDESNPAFADAIRRRDPKKRF 60

Query: 135  KKILDACKNKTKCEGGDEID--VPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQ 192
              +   CK K  CE    +D  VP    +EP K + GGCG  QP++  EG+++   +KAQ
Sbjct: 61   DMVWRLCKPKMICETTMALDNDVPSDKTKEP-KHDHGGCGNIQPEVRREGLRLTGTWKAQ 119

Query: 193  RKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIP 252
            +   +++ Q PE    K+ +T +  L + + IS ED + +GL+  YARP+WMI+ VLP+P
Sbjct: 120  KGDEENEGQQPE----KKPITPQMALNIFRHISTEDIKRIGLSNDYARPEWMIITVLPVP 175

Query: 253  PPPV------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHI 300
            PPPV            R  DDLT++L  IIR N N+RR E  G+PAH+++EF QLLQFH+
Sbjct: 176  PPPVRPSISVDGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHV 235

Query: 301  ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTIN 360
            ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP ++
Sbjct: 236  ATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLS 295

Query: 361  IDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRY 420
            +D++GVP SIA  LTYPETVTPYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+
Sbjct: 296  LDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG---AKYVIRDTGERIDLRH 352

Query: 421  LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP 480
             K++ +  L+ G+KVERH+ DGD+++FNRQPSLHK S+MGHR+++MPYSTFRLNLSVTSP
Sbjct: 353  HKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSP 412

Query: 481  YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
            YNADFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  K+ +R
Sbjct: 413  YNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRR 472

Query: 541  DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA--AWH 598
            D F+ K+  MNIL+W  D+DG +PQP I+KP  +WTGKQ+ +L+IP  +NL R +   + 
Sbjct: 473  DVFLTKEQVMNILLWVPDWDGVIPQPAIVKPLAMWTGKQILSLVIPTGLNLLRGSEEGFS 532

Query: 599  ADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQ 658
              ND G+L +G        GEL+ G L KKT+G S G LIH+++ E GP+AA  F    Q
Sbjct: 533  PLNDDGLLISG--------GELMYGLLAKKTVGASGGGLIHIVFNEKGPEAAMNFFNGAQ 584

Query: 659  WLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTM 718
             +VNYWLL N FSIGIGDTI D  T++ I + ++  K  V  + + A +  LE  PG  +
Sbjct: 585  TVVNYWLLHNGFSIGIGDTIPDRHTIQQIENAVNNQKAEVLEITRSATENELESLPGMNV 644

Query: 719  MESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNV 778
             E+FE+KV++ LN ARD+AG+  +KSL + NN   M  +GSKGS INISQMTA VGQQ+V
Sbjct: 645  RETFESKVSKALNKARDDAGTVTEKSLKDLNNAPQMARSGSKGSTINISQMTAVVGQQSV 704

Query: 779  EGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 838
            E KRIPFGF  RTLPHFTKDDY PES+GFVENSYLRGLTP EFFFHAM GREGLIDTAVK
Sbjct: 705  EAKRIPFGFKYRTLPHFTKDDYSPESKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVK 764

Query: 839  TSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
            T+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D  +IE Q +D +    
Sbjct: 765  TAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGAYIEQQRVDIIACST 824

Query: 899  SEFDKAFRFEM----DEENWNPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLA 952
             +F++ FR ++     E + +P ++ Q  E I D++T K L    D E ++LE DR +L 
Sbjct: 825  KQFERKFRVDLMDSKQETSISPEFLEQANEMIGDVETQKHL----DNEYRQLEKDRAELR 880

Query: 953  TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGE 1012
                   + +  LP+N+ R++  A+ TFK+     S++HP EV+  V  L +RL VV G 
Sbjct: 881  RNRQDESE-NLQLPLNVIRILETAKTTFKIKNGARSNLHPAEVIPQVQGLLDRLVVVRGT 939

Query: 1013 DPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEM 1072
            D LS EAQ NATL F I LRS  A KR++ E+ L + AF+ V+GEIESRF ++ V PGEM
Sbjct: 940  DKLSEEAQHNATLLFKIQLRSRLAFKRLVMENSLNKLAFQHVLGEIESRFCRAAVNPGEM 999

Query: 1073 IGCVAAQSIGEPATQMT 1089
            +G +AAQSIGEPATQMT
Sbjct: 1000 VGVLAAQSIGEPATQMT 1016


>gi|336041419|gb|AEH95287.1| RNA polymerase II largest subunit [Malawimonas jakobiformis]
          Length = 1042

 Score = 1122 bits (2902), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 575/1058 (54%), Positives = 736/1058 (69%), Gaps = 73/1058 (6%)

Query: 81   GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDA 140
            GH+ELAKP+FH GF KTV+ ++R VCF CS++LAD  D +F +AL ++N K+R +++ D 
Sbjct: 1    GHVELAKPVFHYGFFKTVVKVLRCVCFYCSRLLADTSDPRFLRALTLKNRKHRFREVHDC 60

Query: 141  CKNKTKCEGGD----------------EIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM- 183
            C  +  CE G+                +  VPG  G+   K   GGCG  QP + +E M 
Sbjct: 61   CVGRKVCEAGEDGRRADPLGVLNDPSSQQQVPGAPGK---KAAHGGCGNVQPHIKVESML 117

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
            +++AE+     K DD+ Q      RK  LT E+V  +L  ISD+DC+ LG NP  ARPDW
Sbjct: 118  RLVAEFP----KRDDEAQ-----PRKMVLTPEKVHNILSHISDDDCRALGFNPALARPDW 168

Query: 244  MILQVLPIPP----------PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            M++ VLP+PP                DDLT +L  I+R N  L+R+ + GAP HII EF 
Sbjct: 169  MVISVLPVPPPAVRPPIAMDSTTAAQDDLTFKLGDIVRTNVELKRKIKAGAPQHIIDEFW 228

Query: 294  QLLQFHIATYFDNELPGQPRATQR-SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
             +LQ+H+A   + ++ G P+  Q+ SGR +KSI SRLK K GRIRGNLMGKRVDFSAR+V
Sbjct: 229  LMLQYHVANIIETDISGFPKPVQKGSGRVLKSIRSRLKGKHGRIRGNLMGKRVDFSARSV 288

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
            IT DP ++++++GVP +IALNLTYPETVTP+NI+R+++LVE GPH  PG   A Y+IR+D
Sbjct: 289  ITADPNLSVNEVGVPRTIALNLTYPETVTPFNIQRMRQLVENGPHKHPG---ANYVIRED 345

Query: 413  GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
            G+RLDLR ++  S   L  G+KVERH++DGD V+FNRQP+LHKMS+MGHR++++PYSTFR
Sbjct: 346  GERLDLRRIRDRSTVPLSYGWKVERHIHDGDVVVFNRQPTLHKMSMMGHRVRVLPYSTFR 405

Query: 473  LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
            LNLSVT+PYNADFDGDEMN+HVPQS ETRAE+ ELMMVP+ IVSPQ+N+PVMGIVQD+LL
Sbjct: 406  LNLSVTTPYNADFDGDEMNLHVPQSHETRAELEELMMVPRNIVSPQANKPVMGIVQDSLL 465

Query: 533  GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
            G +  TKRDTF+E+D+  N LMW   +DG VP+P ILKP+ LWTGKQVF+LI+P  +N+ 
Sbjct: 466  GTKLFTKRDTFLERDLVNNTLMWLPSWDGHVPKPAILKPKQLWTGKQVFSLIVPP-VNVL 524

Query: 593  RTAAWHADN-DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 651
            R +    D  D    TA DT VRIE+GE+LSG +CK T+G ++GSL+H+IW E+G +A R
Sbjct: 525  RKSIGAPDKEDNDDFTASDTKVRIEQGEVLSGIVCKNTVGNASGSLVHIIWNELGHEATR 584

Query: 652  KFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711
             FL   Q ++NYWL+   FSIGIGDTIAD  TM+ I   I ++K  V +LI Q  +  LE
Sbjct: 585  NFLDSVQTVINYWLMNRGFSIGIGDTIADPATMQNITKIIGRSKQEVSDLITQLHEGKLE 644

Query: 712  PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 771
              PGRT+ME+FE KVN  LN ARDEAG +A  SL  +N  K MVTAGSKGS INI+QM A
Sbjct: 645  ATPGRTLMETFEMKVNTALNKARDEAGKAAVGSLRATNAAKEMVTAGSKGSNINIAQMIA 704

Query: 772  CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 831
            CVGQQNVEGKRIP+GF +RTLPHF  +D  PESRGFVENSYLRGL PQEFFFHAMGGREG
Sbjct: 705  CVGQQNVEGKRIPYGFRNRTLPHFVTNDMTPESRGFVENSYLRGLNPQEFFFHAMGGREG 764

Query: 832  LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL 891
            LIDTAVKTSETGYIQRRL+KAMED+MVKYDGTVRNS+G+V+QFLYGEDG D   IE Q L
Sbjct: 765  LIDTAVKTSETGYIQRRLMKAMEDVMVKYDGTVRNSVGEVVQFLYGEDGFDGTAIEFQML 824

Query: 892  DSLKMKK-------------------SEFDKAFRFEMDEENWNPN----YMLQEYIDDLK 928
            D + M                     S   KA+R ++       +    YM  + ++DL+
Sbjct: 825  DHMFMDDEYARSLRFLISSLTVYSVCSRMRKAYRIDVRVGQRGADAPEHYMQPDVLEDLR 884

Query: 929  TIKELRDVFDAEVQKLEADRYQLATEIATS----GDSSWPLPVNLKRLIWNAQKTFKVDP 984
            +  E     + E  +L  DR  L +E+ +         WP+P NLKR+IWNA+K F  + 
Sbjct: 885  SNAEHMAALEREFARLVKDRXLLRSEVFSQSLRPNQDRWPMPGNLKRIIWNARKLFPTER 944

Query: 985  RRPSDMHP-MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKE 1043
               SD+HP ++VV AV+ L  RL +VPG D ++ EAQ+NATL F IL+RS  A+KRVL E
Sbjct: 945  DEVSDLHPVLDVVAAVESLTRRLVIVPGTDFIAQEAQENATLLFGILVRSELAAKRVLTE 1004

Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            ++L + +FEWV+GEIE RF     A GEM+G +AAQSI
Sbjct: 1005 YKLNKRSFEWVLGEIEHRFKAGRAAAGEMVGPIAAQSI 1042


>gi|120561229|gb|ABM27000.1| RNA polymerase II largest subunit, partial [Blastocladiella
            emersonii]
          Length = 1005

 Score = 1120 bits (2897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/1021 (55%), Positives = 734/1021 (71%), Gaps = 32/1021 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELA+P++HI F+  V  I+  +CF+CS++L D +   FK+A++ R+   R K++   C
Sbjct: 1    HIELARPVYHISFLPRVKKILECICFHCSRLLGDPNHPAFKKAVRTRDRNRRFKEVHAHC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNK---GGCGAQQPKLTIEGMKMIAEYKAQRKKNDD 198
            K    C   D    P +  E P  +++    GCG +QP +  + + + +++K     +DD
Sbjct: 61   KAINVCPAED----PNKADEMPDLEDRIPLHGCGKRQPDIRKKNLTLYSQWKPN--ASDD 114

Query: 199  QEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP---- 254
                   +E +  LT ++VL +LKRI DEDC+ LGLNP+YARP+WMIL V P+PPP    
Sbjct: 115  -----AALEGRHDLTPDQVLQILKRIPDEDCEALGLNPEYARPEWMILTVFPVPPPPVRP 169

Query: 255  ------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
                    R  DDLT +L  I++ N  + ++ R+G+  H + E  +LLQFH AT  DNE+
Sbjct: 170  SIRSDGAARGEDDLTFKLCDIVKANAAIYQKIRDGSTGHQLKEHEELLQFHCATLVDNEI 229

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
             G PRA Q+SGRPIK+I +RLK KEGR+RGNLMGKRVDFSARTVIT DP ++IDQ+GVP 
Sbjct: 230  SGMPRAAQKSGRPIKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVPR 289

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIALNLTYPE VT +NI RL+E+V  G    PG   AKY+IR DG R+DLR        +
Sbjct: 290  SIALNLTYPEMVTRHNIRRLQEMVHRGAEEHPG---AKYVIRPDGSRVDLRVSGAQGAPN 346

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            L+ G+ VERHL+D D ++FNRQPSLHKMS+MGH++K+MPYSTFRLNLSVTSPYNADFDGD
Sbjct: 347  LQPGWVVERHLSDNDVIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDGD 406

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMN+HVPQS E RAE+ +L MVP  IVSPQSN+PVMGIVQDTL G  K T+RDTF++K +
Sbjct: 407  EMNLHVPQSVEARAEIQQLCMVPLQIVSPQSNKPVMGIVQDTLCGITKFTRRDTFMDKAM 466

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
             MN+LMW   +DG VP P ILKP+PLWTGKQ+ +LIIPK +N     + H D +   ++ 
Sbjct: 467  VMNLLMWVPGWDGNVPVPAILKPKPLWTGKQILSLIIPK-VNCITLHSTHPDGETTDISP 525

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            GDT V +E GELL+G +CKKT+GTS G L+HV W E GP+AA+  L   Q +VN+WLL N
Sbjct: 526  GDTRVIVEDGELLAGIVCKKTVGTSAGGLVHVSWMEHGPEAAKALLNGCQTIVNHWLLHN 585

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDTIAD  TM+ IN+ I +A+  V  +I+ AQ  +L+ E G T+ E+FE +VN+
Sbjct: 586  GFSIGIGDTIADDDTMQRINELIGEARAGVNAVIEAAQKDTLKVETGLTLRETFEAQVNR 645

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
            +LN A + AG +A KS    NN+K MV AGSKGS INISQM+ACVGQQNVEGKRIPFGF 
Sbjct: 646  LLNGAVNAAGGAAAKSFKVHNNVKHMVVAGSKGSNINISQMSACVGQQNVEGKRIPFGFQ 705

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             R+LPHF KDDY PESRGFVENSYLRGL PQEFFFHAMGGREGLIDTAVKT+ETGYIQRR
Sbjct: 706  YRSLPHFVKDDYSPESRGFVENSYLRGLNPQEFFFHAMGGREGLIDTAVKTAETGYIQRR 765

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKA+EDIMVKYDGTVRN+ G++IQF YGEDGMD   +ESQ L+ L+M  ++FD+ +R +
Sbjct: 766  LVKALEDIMVKYDGTVRNAQGNIIQFAYGEDGMDGTRVESQVLEPLRMSDAKFDRRYRID 825

Query: 909  MDEENWNPNY---MLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL 965
            + +   +       ++  I       E++++ +AE ++L  DR  L  +I   GD+ WPL
Sbjct: 826  VTDVGGSSGLRPGTVEFGIQREMQSAEVQELLNAEYEQLLRDRRDL-QQIFPRGDARWPL 884

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
            P NL R+IWNAQ  FK+D  +PS++HP  VV+ V  L + L V+PG D +SVEAQ+NATL
Sbjct: 885  PCNLNRIIWNAQNLFKIDKSKPSNLHPDYVVKKVRALCDGLVVIPGTDKISVEAQRNATL 944

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPA 1085
                L+RST A+KRVL+E+RL   AF++V+GEI++RF QSLV PGEM+G +AAQSIGEPA
Sbjct: 945  LMQALVRSTLATKRVLEEYRLDSRAFDYVVGEIQTRFAQSLVHPGEMVGIIAAQSIGEPA 1004

Query: 1086 T 1086
            T
Sbjct: 1005 T 1005


>gi|110669612|gb|ABG81901.1| RNA polymerase II largest subunit [Cladonia caroliniana]
          Length = 1016

 Score = 1118 bits (2892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/1038 (55%), Positives = 741/1038 (71%), Gaps = 45/1038 (4%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P+FH+GFM  +  ++ +VC NC KI  DE + KF  AL+ R+PK R 
Sbjct: 1    ECPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKIKLDESNPKFADALRFRDPKKRF 60

Query: 135  KKILDACKNKTKCE---GGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKA 191
              I   CK K  CE     DE D P +  +EP K   GGCG  QP++  EG+++   +K 
Sbjct: 61   DAIWRHCKVKMVCETTVALDE-DAPPEKQKEP-KHEHGGCGNVQPEIRREGLRLTGTWKP 118

Query: 192  QRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPI 251
            Q+   + + Q PE    K+ +T +  L + + IS+ED   LGL+  YARP+WMI+ VLP+
Sbjct: 119  QKGDEETEGQQPE----KKPITPQMALNIFRHISEEDIATLGLSKDYARPEWMIITVLPV 174

Query: 252  PPPP------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFH 299
            PPPP            +R  DDLT++L  IIR N N+RR E  G+PAH+++EF QLLQFH
Sbjct: 175  PPPPVRPSISVDGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFH 234

Query: 300  IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTI 359
            +ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +
Sbjct: 235  VATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNL 294

Query: 360  NIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLR 419
            ++D++GVP S+A  LTYPETVTPYNI +L +LV+ GP+  PG   AKY+IR DG+R+DLR
Sbjct: 295  SLDEVGVPRSVARTLTYPETVTPYNIHKLHQLVKNGPNDHPG---AKYVIRADGERIDLR 351

Query: 420  YLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTS 479
            + K++ +  L+ G+KVERH+ DGDF++FNRQPSLHK S+MGHR+++MPYSTFRLNLSVTS
Sbjct: 352  HHKRAGEIPLQYGWKVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTS 411

Query: 480  PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 539
            PYNADFDGDEMN+HVPQS ETRAEV +L MVP  IV PQ N P+MGIVQDTL G  K+ +
Sbjct: 412  PYNADFDGDEMNLHVPQSEETRAEVSQLCMVPLNIVPPQRNGPLMGIVQDTLCGIYKMCR 471

Query: 540  RDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA--AW 597
            RD F+ K+  MNIL+W  D+DG +PQP I+KPRPLWTGKQ+ +L++P  +NL R +   +
Sbjct: 472  RDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPRPLWTGKQILSLVMPVGLNLLRVSNEGF 531

Query: 598  HADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHT 657
                D G+L +G        GE++ G L KKT+G S G ++H+I+ E GP+AA KF    
Sbjct: 532  SPLRDDGLLISG--------GEIMYGLLNKKTVGASGGGVVHIIFNEKGPEAAMKFFNGA 583

Query: 658  QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
            Q +VNYWLL N FSIGIGDTI D  T+  I   ++K K+ V  + K A +  LE  PG  
Sbjct: 584  QTVVNYWLLHNGFSIGIGDTIPDRATIGKIEAAVNKQKDEVGVITKSATENELESLPGMN 643

Query: 718  MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
            + E+FE+KV++ LN ARD+AG   ++SL + NN   M  +GSKGS INISQMTA VGQQ+
Sbjct: 644  VRETFESKVSKALNNARDDAGRVTEESLKDLNNATQMARSGSKGSTINISQMTAVVGQQS 703

Query: 778  VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
            VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAV
Sbjct: 704  VEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 763

Query: 838  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
            KT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D+V IESQ +D +   
Sbjct: 764  KTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDAVHIESQRVDIITCS 823

Query: 898  KSEFDKAFRFE-MD---EENWNPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQL 951
              +F+K F+ + MD   + + +P+++ Q  E I DL+T + L    D E  KL A R  L
Sbjct: 824  DKQFEKKFKVDLMDPKPDTSISPDFLEQANEMIGDLETQQYL----DDEYNKLLAAREFL 879

Query: 952  ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG 1011
             +  A   +    LP+N+ R++  A+ TFK+     S++ P+EVV  V++L ++L +V G
Sbjct: 880  RSTRADD-NEQLQLPLNVIRILDTAKTTFKIKNGARSNLQPVEVVTKVNELLDKLVIVRG 938

Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
            +D LS E Q NATL F   LRS  A KR++ E+ L + AF+ VIGEIESRF ++ V PGE
Sbjct: 939  DDELSREGQHNATLLFKAQLRSRLAFKRLVMENSLNKLAFQHVIGEIESRFSRAAVNPGE 998

Query: 1072 MIGCVAAQSIGEPATQMT 1089
            M+G +AAQSIGEPATQMT
Sbjct: 999  MVGVLAAQSIGEPATQMT 1016


>gi|113957534|gb|ABI49121.1| RNA polymerase II largest subunit [Pyxine subcinerea]
          Length = 1015

 Score = 1117 bits (2889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 565/1030 (54%), Positives = 733/1030 (71%), Gaps = 30/1030 (2%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P+FH GF+  +  ++  VC NC KIL D+ +  FK AL+IR+PK R 
Sbjct: 1    ECPGHFGHIELAVPVFHTGFISKIKKLLEMVCHNCGKILVDDSNPAFKDALRIRDPKKRF 60

Query: 135  KKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRK 194
              I   CK K  CE     D   +D ++ L    GGCG  QP++  +G+K+I  +KAQ+ 
Sbjct: 61   DAIWRLCKTKMICETTIPQDDDSKDLQKDLGPGHGGCGNVQPEVRKDGLKLIGTWKAQKG 120

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
             ++ + Q PE    K+ +T +  L + + +S ED + +GL+  YARP+WMI+ VLP+PPP
Sbjct: 121  DDETEAQQPE----KKPITPQMALNIFRHMSAEDVKNIGLSNDYARPEWMIITVLPVPPP 176

Query: 255  PVRPS------------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT 302
            PVRPS            DDLT++L  IIR N N+RR E  G PAHII EF  LLQFH+AT
Sbjct: 177  PVRPSIKTDAGDGPAGEDDLTYKLGDIIRANGNVRRGEVEGTPAHIIEEFETLLQFHVAT 236

Query: 303  YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
            Y  N+  GQP+A Q+SGRP+K+I SRL+ KEGR+RGNLMGKRVDFSARTVIT DP I++D
Sbjct: 237  YMANDTAGQPQALQKSGRPVKAIRSRLEGKEGRVRGNLMGKRVDFSARTVITGDPNISLD 296

Query: 363  QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK 422
            ++GVP SIA  LTYPETVTPYNI +L +LV+ GP+  PG   A+Y+IRD G+R+DLRY K
Sbjct: 297  EVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPG---ARYVIRDTGERIDLRYHK 353

Query: 423  KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 482
            ++ D  L+ G+KVERH+ DGD+++FNRQPSLHK S+MGHR+++MPYSTFRLNLSVTSPYN
Sbjct: 354  RAGDISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYN 413

Query: 483  ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 542
            ADFDGDEMN+HVPQS ETRAEV +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD 
Sbjct: 414  ADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDV 473

Query: 543  FIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADND 602
            F+ +D  MNIL+W  D+DG +PQP ILKP P+WTGKQ+ +L+IP  +NL R+       D
Sbjct: 474  FLNQDQVMNILLWVPDWDGIIPQPAILKPSPMWTGKQIISLVIPPGLNLGRSG------D 527

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
             G     D+ + I  GEL+ G L KK +G S+  +IH+++ E GP+AA  F    Q +VN
Sbjct: 528  DGFSPIDDSGLLISNGELMYGLLSKKIVGASSAGIIHIVYNEKGPEAAMAFFNGAQTVVN 587

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDTI D +T++ I D ++K K  V  + K A +  L+  PG  + E+F
Sbjct: 588  YWLLHNGFSIGIGDTIPDRETIKHIEDAVNKQKAEVLEITKSATESVLDTLPGMNVRETF 647

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E++V++ LN ARD+AG+  +KSL + NN   M  +GSKGS I+ISQMTA VGQQ+VEGKR
Sbjct: 648  ESRVSKALNKARDDAGTETEKSLKDLNNAIQMARSGSKGSTIDISQMTAVVGQQSVEGKR 707

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 708  IPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 767

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+ED+M KYDGT+RNSLGD++QFLYGEDG+D   IE Q LD +K   + F+
Sbjct: 768  GYIQRRLVKALEDVMAKYDGTIRNSLGDIVQFLYGEDGLDGATIEPQLLDIIKCSDARFE 827

Query: 903  KAFRFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQLATEIATSG 959
            K FR ++ E++   + +  E+++    +    E++   D E ++L+A R +   +  T  
Sbjct: 828  KMFRVDLMEDDPRTS-ISAEFLEQATEVAGNIEVQQYLDQEFEQLKAAR-EFLRKNKTDE 885

Query: 960  DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEA 1019
            +    LP+N+ R++  A+ TF +     S++HP EV+  V+ L +RL VV G+D LS E+
Sbjct: 886  NEQLQLPLNVIRILDTAKTTFNIKTGARSNLHPAEVIPQVNDLLDRLVVVRGDDALSKES 945

Query: 1020 QKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQ 1079
            Q NATL F   LRS  A KR++ E  L + AF+ V+GEIESRF ++ V+PGEM+G +AAQ
Sbjct: 946  QHNATLLFKAQLRSRLAFKRLVLESSLNKLAFQHVLGEIESRFCRATVSPGEMVGVLAAQ 1005

Query: 1080 SIGEPATQMT 1089
            SIGEPATQMT
Sbjct: 1006 SIGEPATQMT 1015


>gi|110669645|gb|ABG81917.1| RNA polymerase II largest subunit, partial [Hypocenomyce scalaris]
          Length = 1027

 Score = 1117 bits (2888), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 570/1046 (54%), Positives = 737/1046 (70%), Gaps = 50/1046 (4%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P+FH+GFM  +  ++ +VC NC KIL DE +  F  AL+ R+PK R 
Sbjct: 1    ECPGHFGHIELATPVFHVGFMTKIKKLLETVCHNCGKILVDEHNPAFADALRYRDPKKRF 60

Query: 135  KKILDACKNKTKCEG--------------GDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
              I   CK K  CE                 +I   G   +EP   + GGCG  QP++  
Sbjct: 61   DAIWRLCKPKLVCETLAAQDKEEEDSSTRTGKIGKQGGRDKEP-AHDHGGCGNIQPEVRR 119

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            +G+K+   +KAQ+   +++ Q PE    K+ LT +  L + + ISDE+ + +GL+  Y R
Sbjct: 120  DGLKLTGSWKAQKGDEENEGQQPE----KKPLTPQMALNIFRHISDEEIKKMGLSNDYVR 175

Query: 241  PDWMILQVLPIPPPP-------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
            P+WMI+ VLP+PPPP             +R  DDLT++L  IIR N N+RR E  G+PAH
Sbjct: 176  PEWMIITVLPVPPPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAH 235

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            I  +F  LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDF
Sbjct: 236  ISKDFEDLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 295

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVIT DP +++D++GVP SIA  LTYPETV PYNI +L +LV+ GP+  PG   AKY
Sbjct: 296  SARTVITGDPNLSLDEVGVPRSIARTLTYPETVAPYNIHKLHQLVKNGPNEHPG---AKY 352

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            +IRD G+R+DLR+ K++ +  L+ G+KVERH+ DGDF++FNRQPSL+K S+MGHR+++MP
Sbjct: 353  VIRDSGERIDLRHHKRAGEIMLQYGWKVERHIVDGDFIIFNRQPSLYKESMMGHRVRVMP 412

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            YSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAEV +L MVP  IVSPQ N P+MGIV
Sbjct: 413  YSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEVSQLCMVPLNIVSPQRNGPLMGIV 472

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL G  K+ +RD F+ K+  MNIL+W  D+DG +PQP ILKPRP WTGKQ+ +L+IP 
Sbjct: 473  QDTLCGVYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAILKPRPKWTGKQIISLVIPA 532

Query: 588  QINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
             +NL R +A      +G+  A D  + +  GEL+ G   KKT+G S G +IH+I+ E GP
Sbjct: 533  GLNLIRPSA------EGLSPANDDGLFVHGGELMYGLFVKKTIGASGGGIIHIIFNEKGP 586

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            +AA  F    Q +VNYWLL N FSIGIGDTI D  T++ I + ++K K +V ++ + A +
Sbjct: 587  EAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRSTIQKIENAVNKQKADVADITQSATE 646

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
             +LE  PG  + E+FE+KV++ LN ARD+AG++ + SL + NN   M  +GSKGS INIS
Sbjct: 647  NTLESLPGMNVRETFESKVSKALNKARDDAGTATEDSLKDLNNAIQMARSGSKGSTINIS 706

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            QMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM 
Sbjct: 707  QMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMA 766

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D V IE
Sbjct: 767  GREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIE 826

Query: 888  SQTLDSLKMKKSEFDKAFRFE-MD-EENWNPNYMLQ--EYIDDLKTIKELRDVFDAEVQK 943
            +Q LD +     +F+K FR + MD +   +P+ + Q  E   D+K    ++   D E ++
Sbjct: 827  AQRLDIITCSDQQFEKKFRVDLMDPKAGISPDILDQANEIAGDVK----IQTYLDEEWEQ 882

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            L+A R  L  +     +    LP+N+ R++  A+  FK+     SD+HPM+V+  V  L 
Sbjct: 883  LKAARAFLRKD-KQDDNEQLQLPINILRILETAKTIFKIKDGARSDLHPMDVIPQVSDLL 941

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
            +RL VV G+D LS EAQ NATL F   LRS  A KRV+ E+ L + AF+ V+GEIESRF 
Sbjct: 942  DRLVVVRGDDVLSREAQHNATLLFKAHLRSRLAFKRVVIEYSLNKLAFQHVLGEIESRFS 1001

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMT 1089
            ++LV PGEM+G +AAQSIGEPATQMT
Sbjct: 1002 RALVNPGEMVGVLAAQSIGEPATQMT 1027


>gi|83320430|gb|ABC02842.1| RNA polymerase II largest subunit, partial [Cladochytrium replicatum]
          Length = 981

 Score = 1116 bits (2886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/1013 (54%), Positives = 726/1013 (71%), Gaps = 45/1013 (4%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+EL KP++H G+++ +  ++  +CF C K+  ++ + +F +  ++ +   R +++   C
Sbjct: 1    HIELVKPIYHAGYLRKIKKVLECICFFCGKLKLNDGNPQFARMKRLTDNNRRFQEVWILC 60

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            K K  C+        G D    ++   GGCG +QP      + ++A Y A          
Sbjct: 61   KGKKICDAD-----TGNDKNNNIEH--GGCGQKQPSFRRGPLGLVARYDA---------- 103

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS-- 259
              +P ++     + +VL + + IS+ D + +GL+P++ARP+WMI+QVL +PP  VRPS  
Sbjct: 104  --DPTDQ----VSSKVLALFESISESDQEAMGLSPEWARPEWMIIQVLLVPPLSVRPSVH 157

Query: 260  --------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 311
                    DDLTH+L  II+ N NLR+ E +G+P H++++   +LQ+H+ATY +NEL G 
Sbjct: 158  MDGMGRSEDDLTHKLMDIIKANNNLRKHEADGSPPHLVTDLESILQYHVATYMNNELSGV 217

Query: 312  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 371
            P ATQ+SGRPIKSI  RLK KEGR+RGNLMGKRVDFSARTVIT DP I+IDQ+GVP SIA
Sbjct: 218  PTATQKSGRPIKSIRDRLKGKEGRLRGNLMGKRVDFSARTVITGDPNISIDQVGVPRSIA 277

Query: 372  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL 431
             NLT+PETVT  N ERL++LV  GP   PG   A+YIIR++G R+DLRY  +S +  L++
Sbjct: 278  RNLTFPETVTAANQERLQQLVRNGPTEHPG---ARYIIRENGDRIDLRYSNRS-EVSLQV 333

Query: 432  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 491
            GY+VERHL D DFV+FNRQPSLHKM +MGHR+K+MP+STFRLNLSVTSPYNADFDGDEMN
Sbjct: 334  GYRVERHLMDDDFVIFNRQPSLHKMGMMGHRVKVMPFSTFRLNLSVTSPYNADFDGDEMN 393

Query: 492  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 551
            +HVPQS ETRAE++EL MVP+ IVSPQ N PVMGIVQDTL G RK+T+RD F+  D+  N
Sbjct: 394  LHVPQSHETRAEIMELCMVPRQIVSPQKNAPVMGIVQDTLCGIRKLTRRDCFLTMDLMKN 453

Query: 552  ILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDT 611
            ILMW  ++DG VP P ILKP PLWTGKQ  +L++PK +N+    + H D +  +++ GDT
Sbjct: 454  ILMWVPNWDGVVPMPAILKPVPLWTGKQAISLVLPK-VNMIGFHSQHPDGEHTLVSPGDT 512

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
             V+IE+GELL G LCK+T+G+S+G +IH+   ++G +  + F    Q +VNYWLL N FS
Sbjct: 513  RVQIEEGELLMGILCKQTVGSSSGGIIHIAMNDLGHEQCKMFFEGAQAVVNYWLLHNGFS 572

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDTI DA TM+ +N TI  AK  V+ +I  AQ  +L+ +PG T+ ESFE+ VN  L 
Sbjct: 573  IGIGDTITDATTMDHVNLTIESAKLEVEKIIATAQAGTLQRKPGMTVRESFESLVNYELG 632

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             AR+  G+ +  SL E NN K MV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RT
Sbjct: 633  RARERTGARSTNSLREQNNFKQMVVAGSKGSNINISQIMACVGQQNVEGKRIPFGFKGRT 692

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHF KDD+ P+SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVK
Sbjct: 693  LPHFKKDDHSPQSRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVK 752

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            A+ED+ VKYD TVR+++G+++QF+YG+DGMD   +E QTL+S+KM  ++F + +  +  E
Sbjct: 753  ALEDLSVKYDSTVRDAVGNIVQFVYGDDGMDGAKVEKQTLESMKMSDTKFRETYFVDAKE 812

Query: 912  ENWNPNYMLQEY--IDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDS-SWPLPVN 968
                 +Y L EY  + D+    E++++   E  +L  DR  L  EI  +  S S PLPVN
Sbjct: 813  S--CISYELVEYHVVKDVMESMEVQELLHNEYDQLYEDRRVLREEIFAAEHSFSLPLPVN 870

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            LKR+IW AQK F  D R+ SD+HP  ++++V +L ER  V+ G+D LSVEAQ NATL F 
Sbjct: 871  LKRVIWKAQKLF--DRRKQSDLHPRHIIKSVQELLERTVVIRGKDELSVEAQANATLLFQ 928

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            IL+RST A++RVL+E RL R AF+W+IGEI+SRF Q+LV PGEM+G +AAQSI
Sbjct: 929  ILVRSTLATRRVLEEFRLDRRAFDWIIGEIDSRFNQTLVHPGEMVGTIAAQSI 981


>gi|72388454|ref|XP_844651.1| RNA polymerase IIA largest subunit [Trypanosoma brucei TREU927]
 gi|62360128|gb|AAX80548.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
 gi|70801184|gb|AAZ11092.1| RNA polymerase IIA largest subunit [Trypanosoma brucei brucei strain
            927/4 GUTat10.1]
          Length = 1765

 Score = 1115 bits (2884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/1746 (38%), Positives = 975/1746 (55%), Gaps = 146/1746 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
             P S  E+ KV  VQF I    +I+  +V  +EH ++ ERG+P  GG++D R+GT D + 
Sbjct: 7    LPVSQMELQKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGRPVRGGINDLRMGTTDFEF 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
             CETC     ECPGHFG++ELA+P+F+IG    VL +++ VC  C  +L +  +    + 
Sbjct: 67   ACETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLQVLKCVCKTCGALLLNTREQDVHKK 126

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKG---------GCGAQQ 175
            L+     NRL+++    + K +     E D+ G DG +    N G         GCGA Q
Sbjct: 127  LQHMTGLNRLRQVAKMAEAKCRVSTSTEDDM-GIDGFDSAPFNGGSGMGPGATRGCGASQ 185

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P+++    +    Y     K   +EQ  E         A++V  VL R+SD+D +L+G +
Sbjct: 186  PRVS----RFYGIYPTLVIKAVHEEQDAE-------WHADKVRQVLDRVSDDDARLMGFD 234

Query: 236  PKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPA 286
            P+   P  ++L VLP+PPP VRP+         D+LTHQ+  I++ N  LRR + +   A
Sbjct: 235  PQRCHPRDLVLTVLPVPPPQVRPAISFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQA 294

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
             I    A LLQ H+ATYF+N             + +KS+  RLK K GR+RGNLMGKRVD
Sbjct: 295  AIDRSRA-LLQEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVD 353

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP I++D++GVP+S+A+ LT+PE V   N +RL E      +P      A 
Sbjct: 354  FSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFARRTVYP-----SAN 408

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            YI   +G    L  L+  S   L +G  VERH+ +GD VLFNRQP+LH+MS+MGHR++++
Sbjct: 409  YIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVL 468

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
             Y+TFRLNLS T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGI
Sbjct: 469  NYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGI 528

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQD+LLG  ++T +DTF++K    ++ +W + +  ++P P ILKPRPLWTGKQVF+LI+P
Sbjct: 529  VQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLW--QLPIPAILKPRPLWTGKQVFSLILP 586

Query: 587  KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
             ++N   T       D+      D++V I +G+LL G + K  +G + GSLIHVI+ E G
Sbjct: 587  -EVNHPATP-----QDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHG 640

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             D   +F+   Q +  ++LL   FS+G+ DT+AD+ T+  +ND + K + NV+ +   A 
Sbjct: 641  SDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAAN 700

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +++L  + G T+++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKG+ +NI
Sbjct: 701  NRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNI 760

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
             Q+   VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EFFFH M
Sbjct: 761  CQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTM 820

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
             GREGLIDTAVKTS+TGY+QR+L+KA+ED+   YDGTVRN+  ++IQF+YGEDG+D   I
Sbjct: 821  AGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGARI 880

Query: 887  ESQTLDSLKMK-KSEFDKAFRFEMDEENWNPNYMLQEYID---------DLKTIKELRDV 936
            E   L  L  +   E +  +++E D +      +   Y+D         D + +++L++ 
Sbjct: 881  EGGQLFPLPFRDDKEMEDTYKYEYDVDGTFSGKVGGNYMDPHVRKMLRADPQNVRKLQE- 939

Query: 937  FDAEVQKLEADR--YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPME 994
               E ++L ADR   +   ++         LPVN  RLI NA+ T      + S++ P+ 
Sbjct: 940  ---EYEQLTADREWSRKMLDLEDRDKLKLNLPVNPGRLIQNARSTMG-KRSQVSNLSPIT 995

Query: 995  VVEAVDKLQERL-KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEH 1044
            +++ V KLQE L K+ P           + LS E  ++A   FN+ LR   ASKRVLKE+
Sbjct: 996  IIDHVRKLQEDLMKLFPSYHRGGDGYIRNTLSRERIESALTLFNVHLRQLLASKRVLKEY 1055

Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
            +L   AFE+++ EI +++ QSL  PGE IG +AAQS GEPATQMTLNTFH AG+S+KNVT
Sbjct: 1056 KLNDRAFEYLLKEIRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVT 1115

Query: 1105 LGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYD 1164
            LGVPRL E++NV++  K  S++V L P  +  K  A+  Q  +EY TL S+T   +  YD
Sbjct: 1116 LGVPRLLELLNVSRNQKHASMTVSLFPPYDE-KRNAQKAQHLIEYCTLESITRRIQFIYD 1174

Query: 1165 PDPMGTIIEEDVEFVKSYYEMPDEDIAPEKI------SPWLLRIELNREMMVDKKLSMAA 1218
            PDP  T++E D + ++  + + DE  A  +I      SPW++R+EL+ +M+ DK L M  
Sbjct: 1175 PDPRHTVVEADRDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDKALDMKD 1234

Query: 1219 VAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEA----PKGELNDESAEDDVFLK--- 1271
            V + I +  +  +      +N  +  +R+R   +E     PK +    +    V L+   
Sbjct: 1235 VKQAILRVDESYIIETGMANNVRQRTIRMRSRYNEGADSIPKLKREIPALLARVHLRGIP 1294

Query: 1272 --------------------KIESNMLTEMALRGVNL---LAVMCHED----VDARRTTS 1304
                                K+  N +  +   G  L      +  ED    ++A +T+S
Sbjct: 1295 GVRRALLKDTTEFTVDQATGKMSGNKIWAIDTDGTALRRAFIGVVGEDGKNIINAVKTSS 1354

Query: 1305 NHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGI 1364
            N + E+  +LGIEA R  +L ELR      G  +NYRH  IL DT+   G+LMA++R GI
Sbjct: 1355 NKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVSRSGI 1414

Query: 1365 NRNDT-GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE 1423
            NR+DT GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG  A +GTG   L LN  
Sbjct: 1415 NRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDLVLNMA 1474

Query: 1424 MLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPV---TDAQ 1480
             L+ A+  Q  +   G +  +           YH    S G     N++ S      D  
Sbjct: 1475 ALQQAVP-QAEAVAPGKDVNV-----------YH----SLGSTLQQNIQSSIAYRPRDHD 1518

Query: 1481 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1540
             +P+V   +       G   SS   + S+P Y+P++  +       +        TSP  
Sbjct: 1519 ATPFVNNASLFLRQGFGGGSSSAPVTASAP-YNPSTTYHGGRLEASAVHRSQAYSTSPAL 1577

Query: 1541 ------SPSSPGYS--PTSPAYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSP 1591
                  + +S  YS   ++ A++P S   S  +      +  S      S +PTS   S 
Sbjct: 1578 EYGGREASASQMYSVMSSASAFNPVSTRMSSVAHSYSEYSEASSYHLQHSVAPTSMQASL 1637

Query: 1592 TSPSYSPTSPSYSPTSPAYSPTS-PAYSPTSPAYSPTSPSYSPTSPSYSPTS---PSYSP 1647
                 S T       S  Y+P +  + +P S  Y+ T    S +  S S ++   P+ SP
Sbjct: 1638 PRTDNSMTMQGIGSVSVPYTPHAMSSAAPPSQVYASTEVGRSHSEDSRSQSALYVPTLSP 1697

Query: 1648 TSPSYS 1653
            T   Y+
Sbjct: 1698 THAGYA 1703


>gi|110669656|gb|ABG81922.1| RNA polymerase II largest subunit, partial [Acarospora laqueata]
          Length = 1016

 Score = 1115 bits (2884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/1030 (54%), Positives = 727/1030 (70%), Gaps = 29/1030 (2%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P+FH+GFM  +  ++ +VC NC KIL DED+  F    + R+PK R 
Sbjct: 1    ECPGHFGHIELATPVFHVGFMTKIKKLLETVCHNCGKILVDEDNPAFADTQRHRDPKRRF 60

Query: 135  KKILDACKNKTKCEGGDEIDVPGQDGEEPLKK--NKGGCGAQQPKLTIEGMKMIAEYKAQ 192
              +   CK K  CE     D       E  KK    GGCG  QP++  EG+++   +KA 
Sbjct: 61   DAVWRLCKPKLICETSTVEDNDFDSKPEKGKKVSRHGGCGNVQPEVRREGLRLTGTWKAM 120

Query: 193  RKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIP 252
            +   +++ Q PE    K+ +T +  L + + IS ED + +GL+  YARP+WMI+ VLP+P
Sbjct: 121  KGDEENEAQQPE----KKPITPQMALNIFRHISPEDARKMGLSNDYARPEWMIITVLPVP 176

Query: 253  PPP-------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFH 299
            PPP             +R  DDLT++L  IIR N N+RR E+ G+PAH++SEF  LLQFH
Sbjct: 177  PPPVRPSISVDGTGQGMRGEDDLTYKLGDIIRANGNVRRCEQEGSPAHVVSEFEALLQFH 236

Query: 300  IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTI 359
            +ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +
Sbjct: 237  VATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNL 296

Query: 360  NIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLR 419
            ++D++GVP SIA  LTYPETVTPYNI +L +LV+ GP+  PG   AKY+IRD G+R+DLR
Sbjct: 297  SLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPG---AKYVIRDSGERIDLR 353

Query: 420  YLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTS 479
            + K++ +  L+ G+KVERH+ DGDF++ NRQPSLHK S+MGHR+++MPYSTFRLNLSVTS
Sbjct: 354  HHKRAGEISLQYGWKVERHIVDGDFIILNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTS 413

Query: 480  PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 539
            PYNADFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  K+ +
Sbjct: 414  PYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGVYKMCR 473

Query: 540  RDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHA 599
            RD F+ K+  MNIL+W  D+DG +PQP I+KPRP WTGKQ+ +L+IPK +NL R++    
Sbjct: 474  RDVFLTKEQVMNILLWVPDWDGVIPQPAIIKPRPKWTGKQIISLVIPKGLNLIRSS---- 529

Query: 600  DNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW 659
              ++G+  A D  + +  GEL+ G   KK++G S G +IH+I+ E GP+ A  F    Q 
Sbjct: 530  --EEGLSPANDEGLFVHGGELMYGLFSKKSVGASGGGIIHIIFNEKGPEVAMNFFNGAQT 587

Query: 660  LVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMM 719
            +VNYWLL N FSIGIGDTI D  T++ I + ++K K +V  + + A +  LEP PG  + 
Sbjct: 588  VVNYWLLHNGFSIGIGDTIPDRSTIQQIENAVNKQKADVAEITRSATENELEPLPGMNVR 647

Query: 720  ESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 779
            E+FE++V++ LN ARDEAG+  +KSL + NN   M  +GSKGS INISQMTA VGQQ+VE
Sbjct: 648  ETFESRVSKALNAARDEAGAVTEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQQSVE 707

Query: 780  GKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 839
            GKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT
Sbjct: 708  GKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKT 767

Query: 840  SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKS 899
            +ETGYIQRRLVKA+E +M KYDGTVRNSLGDV+QF+YGEDG+D   IE Q +D +     
Sbjct: 768  AETGYIQRRLVKALEGVMAKYDGTVRNSLGDVVQFVYGEDGLDGSHIEQQRVDIIACSDK 827

Query: 900  EFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSG 959
            +F+K FR ++ +     +  + E   ++    E++  FD E ++L+ DR  L        
Sbjct: 828  QFEKKFRVDLMDTKAGISPDVLELATEIAGDVEVQQYFDEEWEQLKLDRAFLRKN-KQDD 886

Query: 960  DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEA 1019
                 LP+N+ R++  A+ T ++     SD+HP  V+ AV  L +RL VV G+D LS+EA
Sbjct: 887  TEQLQLPINVLRILETAKTTLRIKDGARSDLHPSVVIPAVRDLLDRLVVVRGDDKLSIEA 946

Query: 1020 QKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQ 1079
            Q+NAT+ F   LRS  A KR++ E+ L + AF+ V+GEIESRF ++ V PGEM+G +AAQ
Sbjct: 947  QENATMLFKAHLRSRLAFKRIVTEYSLNKLAFQHVLGEIESRFARAAVNPGEMVGVLAAQ 1006

Query: 1080 SIGEPATQMT 1089
            SIGEPATQMT
Sbjct: 1007 SIGEPATQMT 1016


>gi|162215|gb|AAA30229.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
 gi|261327848|emb|CBH10825.1| RNA polymerase IIA largest subunit, putative [Trypanosoma brucei
            gambiense DAL972]
          Length = 1765

 Score = 1115 bits (2883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/1746 (38%), Positives = 975/1746 (55%), Gaps = 146/1746 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
             P S  E+ KV  VQF I    +I+  +V  +EH ++ ERG+P  GG++D R+GT D + 
Sbjct: 7    LPVSQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGRPVRGGINDLRMGTTDFEF 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
             CETC     ECPGHFG++ELA+P+F+IG    VL +++ VC  C  +L +  +    + 
Sbjct: 67   ACETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHKK 126

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKG---------GCGAQQ 175
            L+     NRL+++    + K +     E D+ G DG +    N G         GCGA Q
Sbjct: 127  LQHMTGLNRLRQVAKMAEAKCRVSTSTEDDM-GIDGFDSAPFNGGSGMGPGATRGCGASQ 185

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P+++    +    Y     K   +EQ  E         A++V  VL R+SD+D +L+G +
Sbjct: 186  PRVS----RFYGIYPTLVIKAVHEEQDAE-------WHADKVRQVLDRVSDDDARLMGFD 234

Query: 236  PKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPA 286
            P+   P  ++L VLP+PPP VRP+         D+LTHQ+  I++ N  LRR + +   A
Sbjct: 235  PQRCHPRDLVLTVLPVPPPQVRPAISFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQA 294

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
             I    A LLQ H+ATYF+N             + +KS+  RLK K GR+RGNLMGKRVD
Sbjct: 295  AIDRSRA-LLQEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVD 353

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP I++D++GVP+S+A+ LT+PE V   N +RL E      +P      A 
Sbjct: 354  FSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFARRTVYP-----SAN 408

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            YI   +G    L  L+  S   L +G  VERH+ +GD VLFNRQP+LH+MS+MGHR++++
Sbjct: 409  YIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVL 468

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
             Y+TFRLNLS T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGI
Sbjct: 469  NYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGI 528

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQD+LLG  ++T +DTF++K    ++ +W + +  ++P P ILKPRPLWTGKQVF+LI+P
Sbjct: 529  VQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLW--QLPIPAILKPRPLWTGKQVFSLILP 586

Query: 587  KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
             ++N   T       D+      D++V I +G+LL G + K  +G + GSLIHVI+ E G
Sbjct: 587  -EVNHPATP-----QDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHG 640

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             D   +F+   Q +  ++LL   FS+G+ DT+AD+ T+  +ND + K + NV+ +   A 
Sbjct: 641  SDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAAN 700

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +++L  + G T+++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKG+ +NI
Sbjct: 701  NRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNI 760

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
             Q+   VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EFFFH M
Sbjct: 761  CQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTM 820

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
             GREGLIDTAVKTS+TGY+QR+L+KA+ED+   YDGTVRN+  ++IQF+YGEDG+D   I
Sbjct: 821  AGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGARI 880

Query: 887  ESQTLDSLKMK-KSEFDKAFRFEMDEENWNPNYMLQEYID---------DLKTIKELRDV 936
            E   L  L  +   E +  +++E D +      +   Y+D         D + +++L++ 
Sbjct: 881  EGGQLFPLPFRDDKEMEDTYKYEYDVDGTFSGKVGGNYMDPHVRKMLRADPQNVRKLQE- 939

Query: 937  FDAEVQKLEADR--YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPME 994
               E ++L ADR   +   ++         LPVN  RLI NA+ T      + S++ P+ 
Sbjct: 940  ---EYEQLTADREWSRKMLDLEDRDKLKLNLPVNPGRLIQNARSTMG-KRSQVSNLSPIT 995

Query: 995  VVEAVDKLQERL-KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEH 1044
            +++ V KLQE L K+ P           + LS E  ++A   FN+ LR   ASKRVLKE+
Sbjct: 996  IIDHVRKLQEDLMKLFPSYHRGGDGYIRNTLSRERIESALTLFNVHLRQLLASKRVLKEY 1055

Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
            +L   AFE+++ EI +++ QSL  PGE IG +AAQS GEPATQMTLNTFH AG+S+KNVT
Sbjct: 1056 KLNDRAFEYLLKEIRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVT 1115

Query: 1105 LGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYD 1164
            LGVPRL E++NV++  K  S++V L P  +  K  A+  Q  +EY TL S+T   +  YD
Sbjct: 1116 LGVPRLLELLNVSRNQKHASMTVSLFPPYDE-KRNAQKAQHLIEYCTLESITRRIQFIYD 1174

Query: 1165 PDPMGTIIEEDVEFVKSYYEMPDEDIAPEKI------SPWLLRIELNREMMVDKKLSMAA 1218
            PDP  T++E D + ++  + + DE  A  +I      SPW++R+EL+ +M+ DK L M  
Sbjct: 1175 PDPRHTVVEADRDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDKALDMKD 1234

Query: 1219 VAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEA----PKGELNDESAEDDVFLK--- 1271
            V + I +  +  +      +N  +  +R+R   +E     PK +    +    V L+   
Sbjct: 1235 VKQAILRVDESYIIETGMANNVRQRTIRMRSRYNEGADSIPKLKREIPALLARVHLRGIP 1294

Query: 1272 --------------------KIESNMLTEMALRGVNL---LAVMCHED----VDARRTTS 1304
                                K+  N +  +   G  L      +  ED    ++A +T+S
Sbjct: 1295 GVRRALLKDTTEFTVDQATGKMSGNKIWAIDTDGTALRRAFIGVVGEDGKNIINAVKTSS 1354

Query: 1305 NHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGI 1364
            N + E+  +LGIEA R  +L ELR      G  +NYRH  IL DT+   G+LMA++R GI
Sbjct: 1355 NKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVSRSGI 1414

Query: 1365 NRNDT-GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE 1423
            NR+DT GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG  A +GTG   L LN  
Sbjct: 1415 NRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDLVLNMA 1474

Query: 1424 MLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPV---TDAQ 1480
             L+ A+  Q  +   G +  +           YH    S G     N++ S      D  
Sbjct: 1475 ALQQAVP-QAEAVAPGKDVNV-----------YH----SLGSTLQQNIQSSIAYRPRDHD 1518

Query: 1481 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1540
             +P+V   +       G   SS   + S+P Y+P++  +       +        TSP  
Sbjct: 1519 ATPFVNNASLFLRQGFGGGSSSAPVTASAP-YNPSTTYHGGRLEASAVHRSQAYSTSPAL 1577

Query: 1541 ------SPSSPGYS--PTSPAYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSP 1591
                  + +S  YS   ++ A++P S   S  +      +  S      S +PTS   S 
Sbjct: 1578 EYGGREASASQMYSVMSSASAFNPVSTRMSSVAHSYSEYSEASSYHLQHSVAPTSMQASL 1637

Query: 1592 TSPSYSPTSPSYSPTSPAYSPTS-PAYSPTSPAYSPTSPSYSPTSPSYSPTS---PSYSP 1647
                 S T       S  Y+P +  + +P S  Y+ T    S +  S S ++   P+ SP
Sbjct: 1638 PRTDNSMTMQGIGSVSVPYTPHAMSSAAPPSQVYASTEVGRSHSEDSRSQSALYVPTLSP 1697

Query: 1648 TSPSYS 1653
            T   Y+
Sbjct: 1698 THAGYA 1703


>gi|68300797|gb|AAY89341.1| RNA polymerase II largest subunit [Rhododendron macrophyllum]
          Length = 589

 Score = 1114 bits (2882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/589 (88%), Positives = 561/589 (95%)

Query: 482  NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRD 541
            NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDTLLGCRKITKRD
Sbjct: 1    NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLGCRKITKRD 60

Query: 542  TFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN 601
            TFIEKDVFMNILMWWEDFDGK+P P ILKP+PLWTGKQVFNLIIPKQINL RT+AWHA++
Sbjct: 61   TFIEKDVFMNILMWWEDFDGKIPAPAILKPKPLWTGKQVFNLIIPKQINLLRTSAWHAES 120

Query: 602  DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            + G +T GDT VRIEKGE+++GTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQ LV
Sbjct: 121  ETGPITPGDTHVRIEKGEVITGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQRLV 180

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLLQ+ FSIGIGDTIADA TME IN+TISKAKN VK+LI+ AQDK LE EPGRTMMES
Sbjct: 181  NYWLLQSGFSIGIGDTIADAATMEKINETISKAKNEVKDLIRAAQDKQLEAEPGRTMMES 240

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FEN+VNQVLN ARD+AGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK
Sbjct: 241  FENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 300

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE
Sbjct: 301  RIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 360

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+Q LDSLKMKKSEF
Sbjct: 361  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQRLDSLKMKKSEF 420

Query: 902  DKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDS 961
            DK FR+E+D+ NWNP+YML E+++DLKTI+E R+VFDAEVQKLEADR QL TEIAT+GD+
Sbjct: 421  DKKFRYEIDDGNWNPSYMLAEHVEDLKTIREFRNVFDAEVQKLEADRLQLGTEIATTGDN 480

Query: 962  SWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQK 1021
            +WP+PVNL RLIWNAQKTFK+D RRPSDMHPME+VEAVDKLQERLKVVPG+D LS+EAQK
Sbjct: 481  NWPMPVNLGRLIWNAQKTFKIDLRRPSDMHPMEIVEAVDKLQERLKVVPGDDLLSMEAQK 540

Query: 1022 NATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            NAT FFNILLRSTFASKRVL E++LTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 541  NATTFFNILLRSTFASKRVLSEYKLTREAFEWVIGEIESRFLQSLVAPG 589


>gi|72393537|ref|XP_847569.1| RNA polymerase IIA largest subunit [Trypanosoma brucei TREU927]
 gi|62175081|gb|AAX69230.1| RNA polymerase IIA largest subunit [Trypanosoma brucei]
 gi|70803599|gb|AAZ13503.1| RNA polymerase IIA largest subunit [Trypanosoma brucei brucei strain
            927/4 GUTat10.1]
          Length = 1765

 Score = 1114 bits (2882), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 672/1746 (38%), Positives = 973/1746 (55%), Gaps = 146/1746 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
             P S  E+ KV  VQF I    +I+  +V  +EH ++ ERG+P  GG++D R+GT D + 
Sbjct: 7    LPVSQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGRPVRGGINDLRMGTTDFEF 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
             CETC     ECPGHFG++ELA+P+F+IG    VL +++ VC  C  +L +  +    + 
Sbjct: 67   ACETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLQVLKCVCKTCGALLLNTREQDVHKK 126

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKG---------GCGAQQ 175
            L+     NRL+++    + K +     E D+ G DG +    N G         GCGA Q
Sbjct: 127  LQHMTGLNRLRQVAKMAEAKCRVSTSTEDDM-GIDGFDSAPFNGGSGMGPGATRGCGASQ 185

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P+++    +    Y     K   +EQ  E         A++V  VL R+SD+D +L+G +
Sbjct: 186  PRVS----RFYGIYPTLVIKAVHEEQDAE-------WHADKVRQVLDRVSDDDARLMGFD 234

Query: 236  PKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPA 286
            P+   P  ++L VLP+PPP VRP+         D+LTHQ+  I++ N  LRR + +   A
Sbjct: 235  PQRCHPRDLVLTVLPVPPPQVRPAISFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQA 294

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
             I    A LLQ H+ATYF+N             + +KS+  RLK K GR+RGNLMGKRVD
Sbjct: 295  AIDRSRA-LLQEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVD 353

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP I++D++GVP+S+A+ LT+PE V   N +RL E      +P      A 
Sbjct: 354  FSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFARRTVYP-----SAN 408

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            YI   +G    L  L+  S   L +G  VERH+ +GD VLFNRQP+LH+MS+MGHR++++
Sbjct: 409  YIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVL 468

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
             Y+TFRLNLS T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGI
Sbjct: 469  NYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGI 528

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQD+LLG  ++T +DTF++K    ++ +W + +  ++P P ILKPRPLWTGKQVF+LI+P
Sbjct: 529  VQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLW--QLPIPAILKPRPLWTGKQVFSLILP 586

Query: 587  KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
             ++N   T       D+      D++V I +G+LL G + K  +G + GSLIHVI+ E G
Sbjct: 587  -EVNHPATP-----QDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHG 640

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             D   +F+   Q +  ++LL   FS+G+ DT+AD+ T+  +ND + K + NV+ +   A 
Sbjct: 641  SDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAAN 700

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +++L  + G T+++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKG+ +NI
Sbjct: 701  NRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNI 760

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
             Q+   VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EFFFH M
Sbjct: 761  CQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTM 820

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
             GREGLIDTAVKTS+TGY+QR+L+KA+ED+   YDGTVRN+  ++IQF+YGEDG+D   I
Sbjct: 821  AGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGARI 880

Query: 887  ESQTLDSLKMK-KSEFDKAFRFEMDEENWNPNYMLQEYID---------DLKTIKELRDV 936
            E   L  L  +   E +  +++E D +      +   Y+D         D + +++L++ 
Sbjct: 881  EGGQLFPLPFRDDKEMEDTYKYEYDVDGTFSGKVGGNYMDPHVRKMLRADPQNVRKLQE- 939

Query: 937  FDAEVQKLEADR--YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPME 994
               E ++L ADR   +   ++         LPVN  RLI NA+ T      + S++ P+ 
Sbjct: 940  ---EYEQLTADREWSRKMLDLEDRDKLKLNLPVNPGRLIQNARSTMG-KRSQVSNLSPIT 995

Query: 995  VVEAVDKLQERL-KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEH 1044
            +++ V KLQE L K+ P           + LS E  ++A   FN+ LR   ASKRVLKE+
Sbjct: 996  IIDHVRKLQEDLMKLFPSYHRGGDGYIRNTLSRERIESALTLFNVHLRQLLASKRVLKEY 1055

Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
            +L   AFE+++ EI +++ QSL  PGE IG +AAQS GEPATQMTLNTFH AG+S+KNVT
Sbjct: 1056 KLNDRAFEYLLKEIRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVT 1115

Query: 1105 LGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYD 1164
            LGVPRL E++NV++  K  S++V L P  +  K  A+  Q  +EY TL S+T   +  YD
Sbjct: 1116 LGVPRLLELLNVSRNQKHASMTVSLFPPYDE-KRNAQKAQHLIEYCTLESITRRIQFIYD 1174

Query: 1165 PDPMGTIIEEDVEFVKSYYEMPDEDIAPEKI------SPWLLRIELNREMMVDKKLSMAA 1218
            PDP  T++E D + ++  + + DE  A  +I      SPW++R+EL+ +M+ DK L M  
Sbjct: 1175 PDPRHTVVEADRDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDKALDMKD 1234

Query: 1219 VAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAP----------------------- 1255
            V + I +  +  +      +N  +  +R+R   +E                         
Sbjct: 1235 VKQAILRVDESYIIETGMANNVRQRTIRMRSRYNEGADSIPQLKREIPALLARVHLRGIP 1294

Query: 1256 ---KGELNDESA-EDDVFLKKIESNMLTEMALRGVNL---LAVMCHED----VDARRTTS 1304
               +  L D +    D    K+  N +  +   G  L      +  ED    ++A +T+S
Sbjct: 1295 GVRRALLKDTTEFTVDQATGKMSGNKIWAIDTDGTALRRAFIGVVGEDGKNIINAVKTSS 1354

Query: 1305 NHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGI 1364
            N + E+  +LGIEA R  +L ELR      G  +NYRH  IL DT+   G+LMA++R GI
Sbjct: 1355 NKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVSRSGI 1414

Query: 1365 NRNDT-GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE 1423
            NR+DT GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG  A +GTG   L LN  
Sbjct: 1415 NRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDLVLNMA 1474

Query: 1424 MLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPV---TDAQ 1480
             L+ A+  Q  +   G +  +           YH    S G     N++ S      D  
Sbjct: 1475 ALQQAVP-QAEAVAPGKDVNV-----------YH----SLGSTLQQNIQSSIAYRPRDHD 1518

Query: 1481 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1540
             +P+V   +       G   SS   + S+P Y+P++  +       +        TSP  
Sbjct: 1519 ATPFVNNASLFLRQGFGGGSSSAPVTASAP-YNPSTTYHGGRLEASAVHRSQAYSTSPAL 1577

Query: 1541 ------SPSSPGYS--PTSPAYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSP 1591
                  + +S  YS   ++ A++P S   S  +      +  S      S +PTS   S 
Sbjct: 1578 EYGGREASASQMYSVMSSASAFNPVSTRMSSVAHSYSEYSEASSYHLQHSVAPTSMQASL 1637

Query: 1592 TSPSYSPTSPSYSPTSPAYSPTS-PAYSPTSPAYSPTSPSYSPTSPSYSPTS---PSYSP 1647
                 S T       S  Y+P +  + +P S  Y+ T    S +  S S ++   P+ SP
Sbjct: 1638 PRTDNSMTMQGIGSVSVPYTPHAMSSAAPPSQVYASTEVGRSHSEDSRSQSALYVPTLSP 1697

Query: 1648 TSPSYS 1653
            T   Y+
Sbjct: 1698 THAGYA 1703


>gi|162221|gb|AAA30232.1| RNA polymerase IIB largest subunit [Trypanosoma brucei]
          Length = 1765

 Score = 1114 bits (2881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 673/1746 (38%), Positives = 975/1746 (55%), Gaps = 146/1746 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
             P S  E+ KV  VQF I    +I+  +V  +EH ++ ERG+P  GG++D R+GT D + 
Sbjct: 7    LPVSQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGRPVRGGINDLRMGTTDFEF 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
             CETC     ECPGHFG++ELA+P+F+IG    VL +++ VC  C  +L +  +    + 
Sbjct: 67   ACETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHKK 126

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKG---------GCGAQQ 175
            L+     NRL+++    + K +     E D+ G DG +    N G         GCGA Q
Sbjct: 127  LQHMTGLNRLRQVAKMAEAKCRVSTSTEDDM-GIDGFDSAPFNGGSGMGPGATRGCGASQ 185

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P+++    +    Y     K   +EQ  E         A++V  VL R+SD+D +L+G +
Sbjct: 186  PRVS----RFYGIYPTLVIKAVHEEQDAE-------WHADKVRQVLDRVSDDDARLMGFD 234

Query: 236  PKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPA 286
            P+   P  ++L VLP+PPP VRP+         D+LTHQ+  I++ N  LRR + +   A
Sbjct: 235  PQRCHPRDLVLTVLPVPPPQVRPAISFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQA 294

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
             I    A LLQ H+ATYF+N             + +KS+  RLK K GR+RGNLMGKRVD
Sbjct: 295  AIDRSRA-LLQEHVATYFNNASTHYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVD 353

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP I++D++GVP+S+A+ LT+PE V   N +RL E      +P      A 
Sbjct: 354  FSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTINKKRLTEFARRTVYP-----SAN 408

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            YI   +G    L  L+  S   L +G  VERH+ +GD VLFNRQP+LH+MS+MGHR++++
Sbjct: 409  YIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVL 468

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
             Y+TFRLNLS T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGI
Sbjct: 469  NYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGI 528

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQD+LLG  ++T +DTF++K    ++ +W + +  ++P P ILKPRPLWTGKQVF+LI+P
Sbjct: 529  VQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLW--QLPIPAILKPRPLWTGKQVFSLILP 586

Query: 587  KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
             ++N   T       D+      D++V I +G+LL G + K  +G + GSLIHVI+ E G
Sbjct: 587  -EVNHPATP-----QDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHG 640

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             D   +F+   Q +  ++LL   FS+G+ DT+AD+ T+  +ND + K + NV+ +   A 
Sbjct: 641  SDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAAN 700

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +++L  + G T+++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKG+ +NI
Sbjct: 701  NRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNI 760

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
             Q+   VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EFFFH M
Sbjct: 761  CQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTM 820

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
             GREGLIDTAVKTS+TGY+QR+L+KA+ED+   YDGTVRN+  ++IQF+YGEDG+D   I
Sbjct: 821  AGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGARI 880

Query: 887  ESQTLDSLKMK-KSEFDKAFRFEMDEENWNPNYMLQEYID---------DLKTIKELRDV 936
            E   L  L  +   E +  +++E D +      +   Y+D         D + +++L++ 
Sbjct: 881  EGGQLFPLPFRDDKEMEDTYKYEYDVDGTFSGKVGGNYMDPHVRKMLRADPQNVRKLQE- 939

Query: 937  FDAEVQKLEADR--YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPME 994
               E ++L ADR   +   ++         LPVN  RLI NA+ T      + S++ P+ 
Sbjct: 940  ---EYEQLTADREWSRKMLDLEDRDKLKLNLPVNPGRLIQNARSTMG-KRSQVSNLSPIT 995

Query: 995  VVEAVDKLQERL-KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEH 1044
            +++ V KLQE L K+ P           + LS E  ++A   FN+ LR   ASKRVLKE+
Sbjct: 996  IIDHVRKLQEDLMKLFPSYHRGGDGYIRNTLSRERIESALTLFNVHLRQLLASKRVLKEY 1055

Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
            +L   AFE+++ EI +++ QSL  PGE IG +AAQS GEPATQMTLNTFH AG+S+KNVT
Sbjct: 1056 KLNDRAFEYLLKEIRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVT 1115

Query: 1105 LGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYD 1164
            LGVPRL E++NV++  K  S++V L P  +  K  A+  Q  +EY TL S+T   +  YD
Sbjct: 1116 LGVPRLLELLNVSRNQKHASMTVSLFPPYDE-KRNAQKAQHLIEYCTLESITRRIQFIYD 1174

Query: 1165 PDPMGTIIEEDVEFVKSYYEMPDEDIAPEKI------SPWLLRIELNREMMVDKKLSMAA 1218
            PDP  T++E D + ++  + + DE  A  +I      SPW++R+EL+ +M+ DK L M  
Sbjct: 1175 PDPRHTVVEADRDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDKALDMKD 1234

Query: 1219 VAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEA----PKGELNDESAEDDVFLK--- 1271
            V + I +  +  +      +N  +  +R+R   +E     PK +    +    V L+   
Sbjct: 1235 VKQAILRVDESYIIETGMANNVRQRTIRMRSRYNEGADSIPKLKREIPALLARVHLRGIP 1294

Query: 1272 --------------------KIESNMLTEMALRGVNL---LAVMCHED----VDARRTTS 1304
                                K+  N +  +   G  L      +  ED    ++A +T+S
Sbjct: 1295 GVRRALLKDTTEFTVDQATGKMSGNKIWAIDTDGTALRRAFIGVVGEDGKNIINAVKTSS 1354

Query: 1305 NHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGI 1364
            N + E+  +LGIEA R  +L ELR      G  +NYRH  IL DT+   G+LMA++R GI
Sbjct: 1355 NKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVSRSGI 1414

Query: 1365 NRNDT-GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE 1423
            NR+DT GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG  A +GTG   L LN  
Sbjct: 1415 NRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDLVLNMA 1474

Query: 1424 MLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPV---TDAQ 1480
             L+ A+  Q  +   G +  +           YH    S G     N++ S      D  
Sbjct: 1475 ALQQAVP-QAEAVAPGKDVNV-----------YH----SLGSTLQQNIQSSIAYRPRDHD 1518

Query: 1481 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1540
             +P+V   +       G   SS   + S+P Y+P++  +       +        TSP  
Sbjct: 1519 ATPFVNNASLFLRQGFGGGSSSAPVTASAP-YNPSTTYHGGRLEARAVHRSQAYSTSPAL 1577

Query: 1541 ------SPSSPGYS--PTSPAYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSP 1591
                  + +S  YS   ++ A++P S   S  +      +  S      S +PTS   S 
Sbjct: 1578 EYGGREASASQLYSVMSSASAFNPVSTRMSSVAHSYSEYSEASSYHLQHSVAPTSMQASL 1637

Query: 1592 TSPSYSPTSPSYSPTSPAYSPTS-PAYSPTSPAYSPTSPSYSPTSPSYSPTS---PSYSP 1647
                 S T       S  Y+P +  + +P S  Y+ T    S +  S S ++   P+ SP
Sbjct: 1638 PRTDNSMTMQGIGSVSVPYTPHAMSSAAPPSQVYASTEVGRSHSEDSRSQSALYVPTLSP 1697

Query: 1648 TSPSYS 1653
            T   Y+
Sbjct: 1698 THAGYA 1703


>gi|110669633|gb|ABG81911.1| RNA polymerase II largest subunit [Mycoblastus sanguinarius]
          Length = 1016

 Score = 1113 bits (2878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 564/1038 (54%), Positives = 736/1038 (70%), Gaps = 45/1038 (4%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P+FH+GFM  +  ++ +VC NC KIL DE +  F  AL+ R+PK R 
Sbjct: 1    ECPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKILVDESNPAFADALRYRDPKRRF 60

Query: 135  KKILDACKNKTKCEGG---DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKA 191
              +   CK K  CE     DE D P    +EP K + GGCG  QP++  EG+++   +KA
Sbjct: 61   DAVWRLCKPKMICETTMTLDE-DAPSDKMKEP-KHDHGGCGNIQPEVRREGLRLNGTWKA 118

Query: 192  QRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPI 251
            Q+   +++ Q PE    K+ +T +  L + + IS ++ + +GL+  YARP+WMI+ VLP+
Sbjct: 119  QKGDEENEGQQPE----KKPITPQMALNIFRHISTDEIRRMGLSNDYARPEWMIITVLPV 174

Query: 252  PPPP------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFH 299
            PPPP            +R  DDLT++L  IIR N N+RR E  G+PAH+++EF QLLQFH
Sbjct: 175  PPPPVRPSISVDGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFH 234

Query: 300  IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTI 359
            +ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +
Sbjct: 235  VATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNL 294

Query: 360  NIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLR 419
            ++D++GVP SIA  LTYPETVTPYNI +L +LV+ GP+  PG   AKY+IRD G+R+DLR
Sbjct: 295  SLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPG---AKYVIRDSGERIDLR 351

Query: 420  YLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTS 479
            + K++ +  L+ G+KVERH+ DGD+++FNRQPSLHK S+MGHR+++MPYSTFRLNLSVT 
Sbjct: 352  HHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTG 411

Query: 480  PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 539
            PYNADFDGDEMN+HVPQS ETRAEV  L MVP  IVSPQ N P+MGIVQDTL G  K+ +
Sbjct: 412  PYNADFDGDEMNLHVPQSEETRAEVSGLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCR 471

Query: 540  RDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA--AW 597
            RD F+ K+  MNIL+W  D+DG +PQP I KPRP+WTGKQ+ +L+IP  +NL R +   +
Sbjct: 472  RDVFLSKEQVMNILLWVPDWDGVIPQPAIFKPRPMWTGKQILSLVIPAGLNLLRGSNEGF 531

Query: 598  HADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHT 657
             +  D G+L +G        GEL+ G   KK++G + G +IH+I+ E GP+ A  F    
Sbjct: 532  TSLTDDGLLVSG--------GELMYGLFNKKSVGATGGGVIHIIYNEKGPEVAMNFFNGA 583

Query: 658  QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
            Q +VNYWLL N FSIGIGDTI D  T++ I D +++ K+ V  + + A +  LE  PG  
Sbjct: 584  QTVVNYWLLHNGFSIGIGDTIPDRNTIQQIEDAVNRQKDEVGEITRNATENELESLPGMN 643

Query: 718  MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
            + E+FE++V++ LN ARD+AG+  + SL + NN   M  +GSKGS INISQMTA VGQQ+
Sbjct: 644  VRETFESEVSKALNKARDDAGTVTENSLKDLNNATQMARSGSKGSTINISQMTAVVGQQS 703

Query: 778  VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
            VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAV
Sbjct: 704  VEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 763

Query: 838  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
            KT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D V IESQ +D +   
Sbjct: 764  KTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIESQRVDIITCS 823

Query: 898  KSEFDKAFRFE-MD---EENWNPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQL 951
              +F+K FR + MD   E + +P+++ Q  E I DL+T    ++  + E + L A R +L
Sbjct: 824  DKQFEKKFRVDLMDPKPETSISPDFLEQASELIGDLET----QEYLEGEYKDLLAAR-EL 878

Query: 952  ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG 1011
              +     +    LP+N+ R++  A+ TFK+     S++HP EV+  V  L +RL VV G
Sbjct: 879  LRKNKQDDNEHLQLPINVIRILETAKSTFKIKNGARSNLHPAEVIPQVKDLLDRLVVVRG 938

Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
             D LS E Q NATL     LRS  A KR++ E+ L + AF+ V+GEIESRF ++ V PGE
Sbjct: 939  GDDLSKEGQYNATLLIKAQLRSRLAFKRLVMENSLNKLAFQHVLGEIESRFCRAAVNPGE 998

Query: 1072 MIGCVAAQSIGEPATQMT 1089
            M+G +AAQSIGEPATQMT
Sbjct: 999  MVGVLAAQSIGEPATQMT 1016


>gi|110669650|gb|ABG81919.1| RNA polymerase II largest subunit, partial [Lichinella iodopulchra]
          Length = 1020

 Score = 1112 bits (2877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/1035 (54%), Positives = 737/1035 (71%), Gaps = 35/1035 (3%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P+FH+GFM  +  ++ +VC NC K+L DE + +F  AL+ R+PK R 
Sbjct: 1    ECPGHFGHIELATPVFHVGFMTKIKKLLETVCHNCGKVLVDESNPQFANALRYRDPKKRF 60

Query: 135  KKILDACKNKTKCEGG-------DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIA 187
              I   CK K  C+         ++ D+  + G +  K + GGCG  QP +  EG+K+  
Sbjct: 61   DAIWRICKPKLICDSDQPQTDFPEDSDILSKAGMK--KPSHGGCGNAQPDVRREGLKLWG 118

Query: 188  EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQ 247
             +K  +K +DD+ Q    +  K+ +T +  L + + I+ ++ +++GL+  YARP+WMIL 
Sbjct: 119  TWK-MKKTDDDEHQ--GAITEKRPITPQMALNIFRLITTDELRMIGLSNDYARPEWMILT 175

Query: 248  VLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            VLP+PPPPV             R  DDLT++L  IIR N N+RR E++G+PAH+ +EF Q
Sbjct: 176  VLPVPPPPVRPSISVDGSSQGPRGEDDLTYKLGDIIRANGNVRRCEQDGSPAHVATEFEQ 235

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQFH+ATY DN++ GQP+A Q+SGRPIKSI SRLK KEGR+RGNLMGKRVDFS+RTVIT
Sbjct: 236  LLQFHVATYMDNDIAGQPQALQKSGRPIKSIRSRLKGKEGRLRGNLMGKRVDFSSRTVIT 295

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP +++D++GVP SIA  LTYPETVTPYNI +L +LV  GP   PG   AKY+IRD G+
Sbjct: 296  GDPNLSLDEVGVPISIAKILTYPETVTPYNIHKLHQLVRNGPSGHPG---AKYVIRDTGE 352

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+ K++ +  L+ G+KVERH+ DGD+++FNRQPSLHK S+MGHR+++MPYSTFRLN
Sbjct: 353  RIDLRHHKRAGEISLQYGWKVERHIIDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLN 412

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVT+PYNADFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL+G 
Sbjct: 413  LSVTTPYNADFDGDEMNLHVPQSEETRAEISQLCMVPLNIVSPQRNGPLMGIVQDTLVGI 472

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
             KI +RD F+ K+  MNIL+W  ++ G +PQP I+KP P WTGKQ+ ++ IPK IN  R 
Sbjct: 473  YKICRRDVFLTKEQVMNILLWVPEWGGVIPQPAIIKPSPKWTGKQLISMAIPKDINFVRP 532

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
                   ++G    GD  V +  GEL+ G   KK++G +   L+H+I+ E G + A KF 
Sbjct: 533  G------EEGFSPVGDDGVFVLGGELIFGQFSKKSVGATRNGLVHIIFNEKGWEIAMKFF 586

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
               Q +VNYWLL   FSIGIGDTI D  T++ I D ++K K  V  + + A +  LEP P
Sbjct: 587  NGAQTIVNYWLLHFGFSIGIGDTIPDRNTIQQIEDAVNKQKAEVAEITRSATENELEPLP 646

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G  + E+FE+KV++ LN ARDEAGS+ +KSL + NN   M  +GSKGS INISQMTA VG
Sbjct: 647  GMNVRETFESKVSKALNAARDEAGSATEKSLKDLNNAIQMARSGSKGSTINISQMTAVVG 706

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLID
Sbjct: 707  QQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLID 766

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+ED M KYDGTVRNSLGD+IQF+YGEDG+D V +E Q +D +
Sbjct: 767  TAVKTAETGYIQRRLVKALEDAMAKYDGTVRNSLGDIIQFVYGEDGLDGVQVEEQRVDII 826

Query: 895  KMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATE 954
                S+F+  FR ++ + N   +  + E   ++    +++   D E ++L+ADR  L ++
Sbjct: 827  ACSDSQFEDKFRIDLMDSNPGISAEVLEQASEIIGDIKVQHYLDEEWEQLKADREFLRSQ 886

Query: 955  IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDP 1014
             +T  +    LP N+ R+I  A+ TFK+     SD+HP++V+ AV  L  RL ++ G+DP
Sbjct: 887  -STDDNEKMHLPFNVIRIIETAKSTFKLKDNGRSDLHPVDVIPAVKDLLSRLIIIRGDDP 945

Query: 1015 LSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIG 1074
            LS+E+Q+NATL F I LRS  A KRV K++RL + AF+ V+GEIESRF ++ V PGEM+G
Sbjct: 946  LSIESQENATLLFKIQLRSRLAFKRVAKQYRLNKLAFQHVLGEIESRFSRAAVNPGEMVG 1005

Query: 1075 CVAAQSIGEPATQMT 1089
             +AAQSIGEPATQMT
Sbjct: 1006 VLAAQSIGEPATQMT 1020


>gi|71423780|ref|XP_812569.1| RNA polymerase IIA largest subunit [Trypanosoma cruzi strain CL
            Brener]
 gi|70877365|gb|EAN90718.1| RNA polymerase IIA largest subunit, putative [Trypanosoma cruzi]
          Length = 1731

 Score = 1112 bits (2876), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 684/1793 (38%), Positives = 991/1793 (55%), Gaps = 184/1793 (10%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
             P S  ++ KV  VQF +    +I+  +V  +EH ++ ERG+P  GG++D R+GT D + 
Sbjct: 7    LPPSQMDLQKVVEVQFEMFKEKQIKDYAVCLVEHAKSYERGQPVRGGINDLRMGTTDFEF 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
             CETC     ECPGHFG+++LA+P+F+IG    VL +++ VC +C  +L D +D +  + 
Sbjct: 67   ACETCHRKHPECPGHFGYIDLAEPVFNIGVFDIVLQVLKCVCKSCGALLMDTNDPQVHKK 126

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            L+     NRL++++  C    KC    +   P    EE +     GCGA QP++     +
Sbjct: 127  LQHLTGVNRLRQVVKMCG--MKCRMSTDATTP----EEAVVAR--GCGATQPRIG----R 174

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
             +  Y     K   +EQ            A+    VL R+SDED +++G +     P  +
Sbjct: 175  YLGIYPTLIIKATLEEQ-------DMVWHADTARQVLDRVSDEDARVMGFDALRCHPRDL 227

Query: 245  ILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
            +L VLP+PPP VRP+         D+LTHQ+  I++ N  LR+ + +     +    A L
Sbjct: 228  VLTVLPVPPPQVRPAISFGSLKSDDELTHQIMSIVKRNNQLRKDKESDVQVAVDRSRA-L 286

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQ H+A YF+N             + +KS+  RLK K GR+RGNLMGKRVDFSARTVIT 
Sbjct: 287  LQEHVAAYFNNASMYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITG 346

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP I++D++GVP+SIA+ LT+PE V+  N +RL E V    +P      A YI   +G  
Sbjct: 347  DPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLTEFVRRPVYP-----SANYIHHPNGTT 401

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
              L   +  S   L +G  VERH+ +GD VLFNRQP+LH+MS+MGHR++++ Y+TFRLNL
Sbjct: 402  TKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNL 461

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            S T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGIVQD+LLG  
Sbjct: 462  SCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSY 521

Query: 536  KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
            ++T +DTF++K    ++ +W + +  ++P P +LKPRPLWTGKQVF+LI+P ++N   T 
Sbjct: 522  RLTDKDTFLDKYFVQSVALWLDLW--QLPVPAVLKPRPLWTGKQVFSLILP-EVNHPATP 578

Query: 596  AWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLG 655
                  ++      D+ + I +G+LL G + K  +G + GSLIHVI+ E G D   +F+ 
Sbjct: 579  -----QERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIHVIFNERGSDEVARFIN 633

Query: 656  HTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPG 715
              Q +  ++L+   FS+G+ DT+ADA T+  +N+ + K + NV+ +   A +++L  + G
Sbjct: 634  GVQRITTFFLINFGFSVGVQDTVADADTLRQMNEVLVKTRENVEKIGAAANNRTLNRKAG 693

Query: 716  RTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQ 775
             T+++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKG+ +NI Q+   VGQ
Sbjct: 694  MTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQ 753

Query: 776  QNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 835
            QNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EFFFH M GREGLIDT
Sbjct: 754  QNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDT 813

Query: 836  AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLK 895
            AVKTS+TGY+QR+L+KA+ED+   YDGTVRN+  ++IQF+YGEDG+D   IE   L  L 
Sbjct: 814  AVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANQELIQFMYGEDGLDGARIEGGQLFPLP 873

Query: 896  MKKS-EFDKAFRFEMDEENWNPNYMLQEYID---------DLKTIKELRDVFDAEVQKLE 945
             + + E +  +++E DE       +   Y+D         D + +++L+  FD    +L 
Sbjct: 874  FRDNKEMESTYKYEYDETGAFNEKVGGAYMDPHVKKMLRADPENVRKLQSEFD----QLM 929

Query: 946  ADR--YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            ADR   +   ++         LPVN+ RLI NA+ T      + S++ P+ +++ V KLQ
Sbjct: 930  ADRDWARRMMDLEEREKLKLNLPVNIGRLIQNARSTMG-KRSQVSNLSPVTIIDHVRKLQ 988

Query: 1004 E-RLKVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEW 1053
            E  LK+ P           + LS +  +NA   F++ LR   ASKRVL+E++L  +AFE+
Sbjct: 989  EDMLKLFPCYHKGVDGRIHNLLSRQRIENALTLFSVHLRQLLASKRVLREYKLNDKAFEY 1048

Query: 1054 VIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREI 1113
            ++ EI +++LQSLV+PGE IG +AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E+
Sbjct: 1049 LLKEIRTKYLQSLVSPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLEL 1108

Query: 1114 INVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIE 1173
            +NV++  K  S++V L P  +  K  A+  Q  +EY TL SVT+  +  YDPDP  T++E
Sbjct: 1109 LNVSRHQKHASMNVSLYPPWDK-KRTAQQAQHLIEYCTLESVTKRIQFIYDPDPRETVVE 1167

Query: 1174 EDVEFVKSYYEMPDEDIAPEKI------SPWLLRIELNREMMVDKKLSMAAVAEKINQEF 1227
             D   ++  + + DE     ++      SPW+ R+EL+ +M VDK L+M  V + I +  
Sbjct: 1168 ADRAILELEWSVMDESDERARLQEVENGSPWIARLELDADMFVDKALNMKDVKQAILRVD 1227

Query: 1228 DDDL--TCIFND-------------DNAD----------KLILRIR----------IMND 1252
            D  +  T + ND             D  D          +L+ R+           ++ D
Sbjct: 1228 DGYVIETGMANDTKERTIRMRPKKNDGVDSIPRLKHAIPELLARVHLRGIPGVRKALLKD 1287

Query: 1253 EA------PKGELNDESA----EDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRT 1302
                      G++  E       D   L++    ++ E   +G N++        +A RT
Sbjct: 1288 RTTFTVDPATGKMTGEKTWLIDTDGTALRRAFIGIVDE---KGNNII--------NATRT 1336

Query: 1303 TSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRH 1362
            +SN + E+  +LGIEA R  +L ELR      G  +NYRH  IL DT+  RG+LMA++R 
Sbjct: 1337 SSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYRHYTILVDTICQRGYLMAVSRV 1396

Query: 1363 GINRND-TGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLN 1421
            GINR++ +GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG  A IGTG   L LN
Sbjct: 1397 GINRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVSANLVLGNQARIGTGLFDLVLN 1456

Query: 1422 DEMLKNAI---ELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTD 1478
               L+ A+   +   P     +  G+   ++  S  PY                     D
Sbjct: 1457 MAALQQAVPQEDAVAPGKEVNVYHGLASTQNLPSSMPYR------------------AKD 1498

Query: 1479 AQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG--YSPTSPGYSPTSP--GYS 1534
             + +P+V        +S  +     G S ++P  + T  G  +  ++  +S   P  G S
Sbjct: 1499 HETTPFVN------DASLFFREGVGGSSSAAPLTASTLYGGMHEASAVHFSQAYPAMGMS 1552

Query: 1535 PTSPTYSPSSPGYSPTSPA--YSPTS---PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1589
                  S  S  YS  S A  Y+P S   PS  P+S  YS  S S+   S    P+ PS 
Sbjct: 1553 DQRVRASSVSQPYSVMSSASVYNPASMQVPSALPSSVDYSEAS-SFHIQSSMAMPSVPSS 1611

Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT-SPSYSPT 1648
                   +     +   SPAY P+  +   T P Y     S S  S SY PT SP+YS  
Sbjct: 1612 PQFEAPQAFGGGRFGGLSPAYVPSVMSSVATQP-YQCVGDSESQQSASYVPTLSPAYSAY 1670

Query: 1649 SPSYSPTSPSYSPT------------SPAYSPTSPGYSPTSPSYSPTSPTYSP 1689
            +   S  +   S +            S +Y P SPG     P     S T  P
Sbjct: 1671 TARRSVVASRASASRVDQQSQQQEDDSASYLPKSPGLHGLPPPVGEFSLTEDP 1723


>gi|23345055|gb|AAN17722.1| RNA polymerase II largest subunit [Trypanosoma cruzi]
          Length = 1731

 Score = 1112 bits (2875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 684/1793 (38%), Positives = 991/1793 (55%), Gaps = 184/1793 (10%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
             P S  ++ KV  VQF +    +I+  +V  +EH ++ ERG+P  GG++D R+GT D + 
Sbjct: 7    LPPSQMDLQKVVEVQFEMFKEKQIKDYAVCLVEHAKSYERGQPVRGGINDLRMGTTDFEF 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
             CETC     ECPGHFG+++LA+P+F+IG    VL +++ VC +C  +L D +D +  + 
Sbjct: 67   ACETCHRKHPECPGHFGYIDLAEPVFNIGVFDIVLQVLKCVCKSCGALLMDTNDPQVHKK 126

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            L+     NRL++++  C    KC    +   P    EE +     GCGA QP++     +
Sbjct: 127  LQHLTGVNRLRQVVKMCG--MKCRMSTDATTP----EEAVVAR--GCGATQPRIG----R 174

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
             +  Y     K   +EQ            A+    VL R+SDED +++G +     P  +
Sbjct: 175  YLGIYPTLIIKATLEEQ-------DMVWHADTARQVLDRVSDEDARVMGFDALRCHPRDL 227

Query: 245  ILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
            +L VLP+PPP VRP+         D+LTHQ+  I++ N  LR+ + +     +    A L
Sbjct: 228  VLTVLPVPPPQVRPAISFGSLKSDDELTHQIMSIVKRNNQLRKDKESDVQVAVDRSRA-L 286

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQ H+A YF+N             + +KS+  RLK K GR+RGNLMGKRVDFSARTVIT 
Sbjct: 287  LQEHVAAYFNNASMYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITG 346

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP I++D++GVP+SIA+ LT+PE V+  N +RL E V    +P      A YI   +G  
Sbjct: 347  DPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLTEFVRRPVYP-----SAFYIHHPNGTS 401

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
              L   +  S   L +G  VERH+ +GD VLFNRQP+LH+MS+MGHR++++ Y+TFRLNL
Sbjct: 402  TKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNL 461

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            S T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGIVQD+LLG  
Sbjct: 462  SCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSY 521

Query: 536  KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
            ++T +DTF++K    ++ +W + +  ++P P +LKPRPLWTGKQVF+LI+P ++N   T 
Sbjct: 522  RLTDKDTFLDKYFVQSVALWLDLW--QLPVPAVLKPRPLWTGKQVFSLILP-EVNHPATP 578

Query: 596  AWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLG 655
                  ++      D+ + I +G+LL G + K  +G + GSLIHVI+ E G D   +F+ 
Sbjct: 579  -----QERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIHVIFNERGSDEVARFIN 633

Query: 656  HTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPG 715
              Q +  ++L+   FS+G+ DT+ADA T+  +N+ + K + NV+ +   A +++L  + G
Sbjct: 634  GVQRITTFFLINFGFSVGVQDTVADADTLRQMNEVLVKTRENVEKIGAAANNRTLNRKAG 693

Query: 716  RTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQ 775
             T+++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKG+ +NI Q+   VGQ
Sbjct: 694  MTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQ 753

Query: 776  QNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 835
            QNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EFFFH M GREGLIDT
Sbjct: 754  QNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDT 813

Query: 836  AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLK 895
            AVKTS+TGY+QR+L+KA+ED+   YDGTVRN+  ++IQF+YGEDG+D   IE   L  L 
Sbjct: 814  AVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANQELIQFMYGEDGLDGARIEGGQLFPLP 873

Query: 896  MKKS-EFDKAFRFEMDEENWNPNYMLQEYID---------DLKTIKELRDVFDAEVQKLE 945
             + + E +  +++E DE       +   Y+D         D + +++L+  FD    +L 
Sbjct: 874  FRDNKEMESTYKYEYDETGAFNEKVGGAYMDPHVKKMLRADPENVRKLQSEFD----QLM 929

Query: 946  ADR--YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            ADR   +   ++         LPVN+ RLI NA+ T      + S++ P+ +++ V KLQ
Sbjct: 930  ADRDWARRMMDLEEREKLKLNLPVNIGRLIQNARSTMG-KRSQVSNLSPVTIIDHVRKLQ 988

Query: 1004 E-RLKVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEW 1053
            E  LK+ P           + LS +  +NA   F++ LR   ASKRVL+E++L  +AFE+
Sbjct: 989  EDMLKLFPCYHKGVDGRIHNLLSRQRIENALTLFSVHLRQLLASKRVLREYKLNDKAFEY 1048

Query: 1054 VIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREI 1113
            ++ EI +++LQSLV+PGE IG +AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E+
Sbjct: 1049 LLKEIRTKYLQSLVSPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLEL 1108

Query: 1114 INVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIE 1173
            +NV++  K  S++V L P  +  K  A+  Q  +EY TL SVT+  +  YDPDP  T++E
Sbjct: 1109 LNVSRHQKHASMNVSLYPPWDK-KRTAQQAQHLIEYCTLESVTKRIQFIYDPDPRETVVE 1167

Query: 1174 EDVEFVKSYYEMPDEDIAPEKI------SPWLLRIELNREMMVDKKLSMAAVAEKINQEF 1227
             D   ++  + + DE     ++      SPW+ R+EL+ +M VDK L+M  V + I +  
Sbjct: 1168 ADRAILELEWSVMDESDERARLQEVENGSPWIARLELDADMFVDKALNMKDVKQAILRVD 1227

Query: 1228 DDDL--TCIFND-------------DNAD----------KLILRIR----------IMND 1252
            D  +  T + ND             D  D          +L+ R+           ++ D
Sbjct: 1228 DGYVIETGMANDTKERTIRMRPKKNDGVDSIPRLKHAIPELLARVHLRGIPGVRKALLKD 1287

Query: 1253 EA------PKGELNDESA----EDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRT 1302
                      G++  E       D   L++    ++ E   +G N++        +A RT
Sbjct: 1288 RTTFTVDPATGKMTGEKTWLIDTDGTALRRAFIGIVDE---KGNNII--------NATRT 1336

Query: 1303 TSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRH 1362
            +SN + E+  +LGIEA R  +L ELR      G  +NYRH  IL DT+  RG+LMA++R 
Sbjct: 1337 SSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYRHYTILVDTICQRGYLMAVSRV 1396

Query: 1363 GINRND-TGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLN 1421
            GINR++ +GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG  A IGTG   L LN
Sbjct: 1397 GINRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVSANLVLGNQARIGTGLFDLVLN 1456

Query: 1422 DEMLKNAI---ELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTD 1478
               L+ A+   +   P     +  G+   ++  S  PY                     D
Sbjct: 1457 MAALQQAVPQEDAVAPGKEVNVYHGLASTQNLPSSMPYR------------------AKD 1498

Query: 1479 AQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG--YSPTSPGYSPTSP--GYS 1534
             + +P+V        +S  +     G S ++P  + T  G  +  ++  +S   P  G S
Sbjct: 1499 HEATPFVN------DASLFFREGVGGSSSAAPLTASTLYGGMHEASAVHFSQAYPAMGMS 1552

Query: 1535 PTSPTYSPSSPGYSPTSPA--YSPTS---PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1589
                  S  S  YS  S A  Y+P S   PS  P+S  YS  S S+   S    P+ PS 
Sbjct: 1553 DQRVRASSVSQPYSVMSSASVYNPASMQVPSALPSSVDYSEAS-SFHIQSSMAMPSVPSS 1611

Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT-SPSYSPT 1648
                   +     +   SPAY P+  +   T P Y     S S  S SY PT SP+YS  
Sbjct: 1612 PQFEAPQAFGGGRFGGLSPAYVPSVMSSVATQP-YQCVGDSESQQSASYVPTLSPAYSAY 1670

Query: 1649 SPSYSPTSPSYSPT------------SPAYSPTSPGYSPTSPSYSPTSPTYSP 1689
            +   S  +   S +            S +Y P SPG     P     S T  P
Sbjct: 1671 TARRSVVASRASASRVDQQSQQQEDDSASYLPKSPGLHGLPPPVGEFSLTEDP 1723


>gi|22002086|gb|AAK97604.2|AF372503_1 RNA polymerase II largest subunit [Trypanosoma cruzi]
          Length = 1731

 Score = 1112 bits (2875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 684/1793 (38%), Positives = 991/1793 (55%), Gaps = 184/1793 (10%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
             P S  ++ KV  VQF +    +I+  +V  +EH ++ ERG+P  GG++D R+GT D + 
Sbjct: 7    LPPSQMDLQKVVEVQFEMFKEKQIKDYAVCLVEHAKSYERGQPVRGGINDLRMGTTDFEF 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
             CETC     ECPGHFG+++LA+P+F+IG    VL +++ VC +C  +L D +D +  + 
Sbjct: 67   ACETCHRKHPECPGHFGYIDLAEPVFNIGVFDIVLQVLKCVCKSCGALLMDTNDPQVHKK 126

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            L+     NRL++++  C    KC    +   P    EE +     GCGA QP++     +
Sbjct: 127  LQHLTGVNRLRQVVKMCG--MKCRMSTDATTP----EEAVVAR--GCGATQPRIG----R 174

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
             +  Y     K   +EQ            A+    VL R+SDED +++G +     P  +
Sbjct: 175  YLGIYPTLIIKATLEEQ-------DMVWHADTARQVLDRVSDEDARVMGFDALRCHPRDL 227

Query: 245  ILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
            +L VLP+PPP VRP+         D+LTHQ+  I++ N  LR+ + +     +    A L
Sbjct: 228  VLTVLPVPPPQVRPAISFGSLKSDDELTHQIMSIVKRNNQLRKDKESDVQVAVDRSRA-L 286

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQ H+A YF+N             + +KS+  RLK K GR+RGNLMGKRVDFSARTVIT 
Sbjct: 287  LQEHVAAYFNNASMYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITG 346

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP I++D++GVP+SIA+ LT+PE V+  N +RL E V    +P      A YI   +G  
Sbjct: 347  DPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLTEFVRRPVYP-----SANYIHHPNGTT 401

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
              L   +  S   L +G  VERH+ +GD VLFNRQP+LH+MS+MGHR++++ Y+TFRLNL
Sbjct: 402  TKLALRRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNL 461

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            S T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGIVQD+LLG  
Sbjct: 462  SCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSY 521

Query: 536  KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
            ++T +DTF++K    ++ +W + +  ++P P +LKPRPLWTGKQVF+LI+P ++N   T 
Sbjct: 522  RLTDKDTFLDKYFVQSVALWLDLW--QLPVPAVLKPRPLWTGKQVFSLILP-EVNHPATP 578

Query: 596  AWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLG 655
                  ++      D+ + I +G+LL G + K  +G + GSLIHVI+ E G D   +F+ 
Sbjct: 579  -----QERPPFPHNDSSIMIRRGQLLCGPITKGIVGAAPGSLIHVIFNERGSDEVARFIN 633

Query: 656  HTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPG 715
              Q +  ++L+   FS+G+ DT+ADA T+  +N+ + K + NV+ +   A +++L  + G
Sbjct: 634  GVQRITTFFLINFGFSVGVQDTVADADTLRQMNEVLVKTRENVEKIGAAANNRTLNRKAG 693

Query: 716  RTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQ 775
             T+++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKG+ +NI Q+   VGQ
Sbjct: 694  MTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQ 753

Query: 776  QNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 835
            QNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EFFFH M GREGLIDT
Sbjct: 754  QNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTMAGREGLIDT 813

Query: 836  AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLK 895
            AVKTS+TGY+QR+L+KA+ED+   YDGTVRN+  ++IQF+YGEDG+D   IE   L  L 
Sbjct: 814  AVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANQELIQFMYGEDGLDGARIEGGQLFPLP 873

Query: 896  MKKS-EFDKAFRFEMDEENWNPNYMLQEYID---------DLKTIKELRDVFDAEVQKLE 945
             + + E +  +++E DE       +   Y+D         D + +++L+  FD    +L 
Sbjct: 874  FRDNKEMESTYKYEYDETGAFNEKVGGAYMDPHVKKMLRADPENVRKLQSEFD----QLM 929

Query: 946  ADR--YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            ADR   +   ++         LPVN+ RLI NA+ T      + S++ P+ +++ V KLQ
Sbjct: 930  ADRDWARRMMDLEEREKLKLNLPVNIGRLIQNARSTMG-KRSQVSNLSPVTIIDHVRKLQ 988

Query: 1004 E-RLKVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEW 1053
            E  LK+ P           + LS +  +NA   F++ LR   ASKRVL+E++L  +AFE+
Sbjct: 989  EDMLKLFPCYHKGVDGRIHNLLSRQRIENALTLFSVHLRQLLASKRVLREYKLNDKAFEY 1048

Query: 1054 VIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREI 1113
            ++ EI +++LQSLV+PGE IG +AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E+
Sbjct: 1049 LLKEIRTKYLQSLVSPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLEL 1108

Query: 1114 INVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIE 1173
            +NV++  K  S++V L P  +  K  A+  Q  +EY TL SVT+  +  YDPDP  T++E
Sbjct: 1109 LNVSRHQKHASMNVSLYPPWDK-KRTAQQAQHLIEYCTLESVTKRIQFIYDPDPRETVVE 1167

Query: 1174 EDVEFVKSYYEMPDEDIAPEKI------SPWLLRIELNREMMVDKKLSMAAVAEKINQEF 1227
             D   ++  + + DE     ++      SPW+ R+EL+ +M VDK L+M  V + I +  
Sbjct: 1168 ADRAILELEWSVMDESDERARLQEVENGSPWIARLELDADMFVDKALNMKDVKQAILRVD 1227

Query: 1228 DDDL--TCIFND-------------DNAD----------KLILRIR----------IMND 1252
            D  +  T + ND             D  D          +L+ R+           ++ D
Sbjct: 1228 DGYVIETGMANDTKERTIRMRPKKNDGVDSIPRLKHAIPELLARVHLRGIPGVRKALLKD 1287

Query: 1253 EA------PKGELNDESA----EDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRT 1302
                      G++  E       D   L++    ++ E   +G N++        +A RT
Sbjct: 1288 RTTFTVDPATGKMTGEKTWLIDTDGTALRRAFIGIVDE---KGNNII--------NATRT 1336

Query: 1303 TSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRH 1362
            +SN + E+  +LGIEA R  +L ELR      G  +NYRH  IL DT+  RG+LMA++R 
Sbjct: 1337 SSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYRHYTILVDTICQRGYLMAVSRV 1396

Query: 1363 GINRND-TGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLN 1421
            GINR++ +GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG  A IGTG   L LN
Sbjct: 1397 GINRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVSANLVLGNQARIGTGLFDLVLN 1456

Query: 1422 DEMLKNAI---ELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTD 1478
               L+ A+   +   P     +  G+   ++  S  PY                     D
Sbjct: 1457 MAALQQAVPQEDAVAPGKEVNVYHGLASTQNLPSSMPYR------------------AKD 1498

Query: 1479 AQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG--YSPTSPGYSPTSP--GYS 1534
             + +P+V        +S  +     G S ++P  + T  G  +  ++  +S   P  G S
Sbjct: 1499 HEATPFVN------DASLFFREGVGGSSSAAPLTASTLYGGMHEASAVHFSQAYPAMGMS 1552

Query: 1535 PTSPTYSPSSPGYSPTSPA--YSPTS---PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1589
                  S  S  YS  S A  Y+P S   PS  P+S  YS  S S+   S    P+ PS 
Sbjct: 1553 DQRVRASSVSQPYSVMSSASVYNPASMQVPSALPSSVDYSEAS-SFHIQSSMAMPSVPSS 1611

Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT-SPSYSPT 1648
                   +     +   SPAY P+  +   T P Y     S S  S SY PT SP+YS  
Sbjct: 1612 PQFEAPQAFGGGRFGGLSPAYVPSVMSSVATQP-YQCVGDSESQHSASYVPTLSPAYSAY 1670

Query: 1649 SPSYSPTSPSYSPT------------SPAYSPTSPGYSPTSPSYSPTSPTYSP 1689
            +   S  +   S +            S +Y P SPG     P     S T  P
Sbjct: 1671 TARRSVVASRASASRVDQQSQQQEDDSASYLPKSPGLHGLPPPVGEFSLTEDP 1723


>gi|113957514|gb|ABI49120.1| RNA polymerase II largest subunit [Anaptychia palmatula]
          Length = 1020

 Score = 1110 bits (2871), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 558/1041 (53%), Positives = 737/1041 (70%), Gaps = 47/1041 (4%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P+FH+GF+  +  ++ ++C NC KI  DE +  FK AL+IR+PK R 
Sbjct: 1    ECPGHFGHIELAVPVFHVGFITKIKKLLETICHNCGKIKVDESNEHFKDALRIRDPKKRF 60

Query: 135  KKILDACKNKTKCEGGDEIDVPGQDGEEPLKKN----------KGGCGAQQPKLTIEGMK 184
              I    K K  CE    +D P  + ++   K+           GGCG  QP++  +G+K
Sbjct: 61   DAIWRVSKPKGICE----MDAPSDESDKDSAKDSPKSKQPRIPHGGCGNIQPEVRRDGLK 116

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
            +I  +K Q+  ++++ Q PE    K+ +T    L +  ++S ED + +G++  YARP+WM
Sbjct: 117  LIGTWKPQKGDDENEGQQPE----KKPITPAMALAIFLQMSPEDIKTMGMSNDYARPEWM 172

Query: 245  ILQVLPIPPPPVRPS------------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
            I+ VLP+PPPPVRPS            DDLT++L  IIR N N+RR E  G PAHII EF
Sbjct: 173  IITVLPVPPPPVRPSIKVDSGDGPTGEDDLTYKLGDIIRANGNVRRGETEGTPAHIIEEF 232

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
              LLQFH+ATY  N+  GQP+A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTV
Sbjct: 233  ETLLQFHVATYMSNDTAGQPQALQKSGRPVKAIRARLKGKEGRVRGNLMGKRVDFSARTV 292

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
            IT DP +++D++GVP SIA  LTYPETVTPYNI++L +L++ GP+  PG   A+Y+IRD+
Sbjct: 293  ITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLIKNGPNEHPG---ARYVIRDN 349

Query: 413  GQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
            G+R+DLRY +++ D  L+ G+KVERH+ DGDF++FNRQPSLHK S+MGHR+++MPYSTFR
Sbjct: 350  GERIDLRYHRRAGDLVLQYGWKVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFR 409

Query: 473  LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
            LNLSVTSPYNADFDGDEMN+HVPQS ETRAEV +L MVP  IVSPQ N P+MGIVQDTL 
Sbjct: 410  LNLSVTSPYNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLC 469

Query: 533  GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
            G  KI +RD F+ +   MNIL+W  D+DG +PQP ILKP P+WTGKQ+ +LIIP  +NL 
Sbjct: 470  GIYKICRRDVFLNQGQVMNILLWVPDWDGIIPQPAILKPTPVWTGKQIVSLIIPAGLNLV 529

Query: 593  RTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARK 652
            R    +  +DKG L +G        GEL+ G L K+ +G     +IH+++ E GP+AA  
Sbjct: 530  RDKNHNPLDDKGALISG--------GELMYGLLTKRIVGAQMAGVIHIVYNEKGPEAAMN 581

Query: 653  FLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEP 712
            F    Q +VNYWLL N FSIGIGDTI D +T+  I + ++K K+ V  + K+A + +LE 
Sbjct: 582  FFNGAQAVVNYWLLHNGFSIGIGDTIPDRETIRLIEEAVTKKKDEVAVITKEATNSTLET 641

Query: 713  EPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 772
             PG  + E+FE+KV++ LN+ARD AG+  + SL + NN   M  +GSKGS INISQMTA 
Sbjct: 642  LPGMNIRETFESKVSKALNSARDNAGTVTEDSLKDLNNATQMARSGSKGSSINISQMTAV 701

Query: 773  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 832
            VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP  FFFHAM GREGL
Sbjct: 702  VGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTGFFFHAMAGREGL 761

Query: 833  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLD 892
            IDTAVKT+ETGYIQRRLVKA+ED+M KYDGT+RNSLGD++QF+YGEDG+D   IE Q +D
Sbjct: 762  IDTAVKTAETGYIQRRLVKALEDVMAKYDGTIRNSLGDIVQFVYGEDGLDGAHIEPQPID 821

Query: 893  SLKMKKSEFDKAFRFEMDEEN----WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
             +K   ++F+K FR ++ EE+     +P+++  E   ++    +++   D E ++L+A R
Sbjct: 822  IIKCSDAKFEKDFRVDLMEEDPKTSISPDFL--EQATEIAGNVQVQQHLDEEFEQLKAAR 879

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
              L  +   + D++  LP+N+ R++  A  TF +     S++ P+EV+  V++L ERL V
Sbjct: 880  EFLRKDKPIAADATIYLPLNISRILETAMTTFNIKHGSRSNLDPVEVITEVNRLLERLVV 939

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            V G+  LS E Q NATL F  LLRS  A KR++ E+ L + AF+ V+GEIESRF ++ V 
Sbjct: 940  VRGDHSLSKEGQHNATLLFKALLRSRLAFKRLVXEYSLNKLAFQHVVGEIESRFSRAAVN 999

Query: 1069 PGEMIGCVAAQSIGEPATQMT 1089
            PGEM+G +AAQSIGEPATQMT
Sbjct: 1000 PGEMVGVLAAQSIGEPATQMT 1020


>gi|83320444|gb|ABC02849.1| RNA polymerase II largest subunit, partial [Coemansia reversa]
          Length = 1013

 Score = 1109 bits (2868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1024 (52%), Positives = 722/1024 (70%), Gaps = 35/1024 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            +++LAKP++HIGF+  V  ++  VC+NC ++ AD     F++ L I +   R K + + C
Sbjct: 1    YIDLAKPVYHIGFINKVKKVLECVCWNCGRLKADYSRPDFQRLLSIPDASQRAKYVWEYC 60

Query: 142  KNKTKCE---------GGDEI--DVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYK 190
            K +T CE         G D +  DV    G       + GCGA+QP     G+K+  + K
Sbjct: 61   KKETTCEKPPEDADMAGPDGVPNDVSMDGGIHGELGTRHGCGARQPNFRKTGLKLYVKNK 120

Query: 191  AQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP 250
                +        EP   +  ++ ERVL  L++I+D D + LG++P +ARP+WM+L V+P
Sbjct: 121  PAAGE--------EPTNDRDEVSVERVLQTLRKITDRDAETLGIDPYFARPEWMVLHVMP 172

Query: 251  IPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHI 300
            +PP  VRPS          DDLT++L+ I++ NE L+R    GAPAH+I+EF  LLQFH 
Sbjct: 173  VPPMTVRPSIQMDAMRPSEDDLTYKLSDILKANERLQRCIVEGAPAHVINEFVTLLQFHT 232

Query: 301  ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTIN 360
            A + +NE  G P+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP I+
Sbjct: 233  AAFMNNEASGMPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNIS 292

Query: 361  IDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRY 420
            IDQ+GVP SIA NLTYPETVTPYNI+RL+E V  G    PG   AK+++RD+G++++L+Y
Sbjct: 293  IDQVGVPRSIARNLTYPETVTPYNIDRLQEYVRNGRDAYPG---AKFVVRDNGEQINLQY 349

Query: 421  LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP 480
             K+  D  L++GY+VER+L D D ++FNRQPSLHKMS+MGHR+K+MPYSTFRLNLSVTSP
Sbjct: 350  NKQRGDFPLQIGYRVERNLIDDDVIIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSP 409

Query: 481  YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
            YNADFDGDEMN+HVPQS E+RAE+ E+ MVPK  +SPQSN+PVMGIVQDTL   RK T+R
Sbjct: 410  YNADFDGDEMNLHVPQSEESRAEIKEICMVPKQFISPQSNKPVMGIVQDTLCAIRKFTRR 469

Query: 541  DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD 600
            D F++ D+ M ++MW  D+DG +P P ILKP+PLWTGKQ+++++IPK  N +R +  H D
Sbjct: 470  DNFLDTDMIMLLMMWLPDWDGTLPTPCILKPKPLWTGKQIYSMVIPKGTNCYRESEGHPD 529

Query: 601  NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
             +   ++ GDT V I  GEL+ G +CKKT+GTS G L+H I+ E G ++AR+F   TQ +
Sbjct: 530  GETTWISPGDTKVYIRDGELVCGMVCKKTVGTSEGGLVHTIFNEFGSESARRFFDGTQRV 589

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            +N W + N FS+GIGD + D  TME +    ++    V   I++AQ+ +LE  PG T+ E
Sbjct: 590  INNWFIHNGFSVGIGDAVTDNATMENVGTITNECYARVDRYIEEAQNDALECMPGMTIKE 649

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            SFE +VN  LN ARD+AG      L ++NN+  M  AGSKGS INISQ++ACVGQQNVEG
Sbjct: 650  SFEVRVNTALNNARDDAGKQVLDRLKDTNNIAQMSLAGSKGSKINISQISACVGQQNVEG 709

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIPFGF  RTLPHF KDDY PESRGFV NSYLRGLTPQEF+FHAMGGREGLIDTAVKT+
Sbjct: 710  KRIPFGFKYRTLPHFGKDDYSPESRGFVRNSYLRGLTPQEFYFHAMGGREGLIDTAVKTA 769

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRL+KA+EDIM +YDG++RNS G ++QF+YGEDGMD  +IE Q + SL+     
Sbjct: 770  ETGYIQRRLIKALEDIMCQYDGSIRNSQGHIVQFVYGEDGMDGCFIEKQKILSLRPSHKV 829

Query: 901  FDKAFRFEMDEEN--WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS 958
            FD+ ++  + +    + P  +    + +++  + ++ V D E  KL  DR  +   I  S
Sbjct: 830  FDRTYKVNVMDHGSIFRPGSLDFSILKNIEGNEAVQRVLDDEFAKLADDRRMMREFILKS 889

Query: 959  GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE-RLKVVPGEDPLSV 1017
            G    PLP+N++RLI  AQ+TF +D RRPS+++P+E+V  V  L E R+ V+ GED LSV
Sbjct: 890  GTDKQPLPLNVERLIKIAQQTFNIDVRRPSNLNPVEIVNLVKSLTESRIPVIRGEDQLSV 949

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ NATL F I LR++ A+KRV++E  LT+EAF+W++ EIE+RF ++ V PGEM+G +A
Sbjct: 950  EAQTNATLLFQIHLRASLATKRVIEEFHLTKEAFDWLLAEIETRFKRAQVNPGEMVGVLA 1009

Query: 1078 AQSI 1081
            AQSI
Sbjct: 1010 AQSI 1013


>gi|110669639|gb|ABG81914.1| RNA polymerase II largest subunit [Bacidia schweinitzii]
          Length = 1016

 Score = 1103 bits (2853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/1035 (53%), Positives = 730/1035 (70%), Gaps = 39/1035 (3%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P+FH+GFM  +  ++ +VC NC KIL DE +  F  A + R+PK R 
Sbjct: 1    ECPGHFGHIELAAPVFHVGFMTKIKKLLETVCHNCGKILVDESNPAFADAQRYRDPKRRF 60

Query: 135  KKILDACKNKTKCEG--GDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQ 192
              +   CK K  CE     E D P  D ++  K + GGCG  QP++  EG+++   +K Q
Sbjct: 61   DAVWRLCKPKLICEATPAAEDDAPTDDPKKQ-KHDHGGCGNAQPEIRREGLRLTGTWKPQ 119

Query: 193  RKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIP 252
            +  ++ + Q P+    K+ +T + VL + + IS+ED + +GL+  YARP+WMI+ VLP+P
Sbjct: 120  KGDDETEAQQPD----KRPITPQMVLNIFRHISNEDIERMGLSNDYARPEWMIITVLPVP 175

Query: 253  PPP------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHI 300
            PPP            +R  DDLT++L  IIR N N++R +  G+PAH+++EF QLLQFH+
Sbjct: 176  PPPVRPSISVDGGNGLRGEDDLTYKLGDIIRANGNVQRCDAEGSPAHVVNEFEQLLQFHV 235

Query: 301  ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTIN 360
            ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP ++
Sbjct: 236  ATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLS 295

Query: 361  IDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRY 420
            +D++GVP SIA  LTYPETVTPYNI++L +LV+ GP+  PG   AKY++RD G+R+DLR+
Sbjct: 296  LDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNDHPG---AKYVLRDTGERIDLRH 352

Query: 421  LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP 480
             K++ +  L+ G+KVERH+ DGD+++FNRQPSLHK S+MGHR+++MPYSTFRLNLSVTSP
Sbjct: 353  HKRAGEISLQYGWKVERHIIDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSP 412

Query: 481  YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
            YNADFDGDEMN+HVPQS ETRAEV +L MVP  +VSPQ N P+MGIVQDTL G  KI +R
Sbjct: 413  YNADFDGDEMNLHVPQSEETRAEVNQLCMVPLNVVSPQRNGPLMGIVQDTLCGIYKICRR 472

Query: 541  DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD 600
            D F+ +D  MNIL+W  D+DG +PQP I+KPR +WTGKQ+ +L++P  +NL R       
Sbjct: 473  DVFLSRDQVMNILLWVPDWDGVIPQPAIIKPRAMWTGKQLISLVVPTGLNLVRPG----- 527

Query: 601  NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
             D G     D  + +  GEL+ G L K  +G S G +IH+I+ E G DAA  F    Q L
Sbjct: 528  -DHGFFPLEDDTLVVLGGELMVGLLKKAYVGASPGGIIHIIYNEKGSDAAMSFFNGAQTL 586

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            VNYWLL N FSIGIGDTI D +T+  I + ++  K+ V  +  +A    LE  PG  + E
Sbjct: 587  VNYWLLHNGFSIGIGDTIPDRETILQIQNAVNNQKDEVTKITDEATRNQLESLPGMNVRE 646

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FE+KV+Q LN ARDEAG+  +KSL + NN   M  +GSKGS INISQMTA VGQQ+V G
Sbjct: 647  TFESKVSQALNKARDEAGTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVGG 706

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+
Sbjct: 707  KRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTA 766

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+    IE+Q +D +     +
Sbjct: 767  ETGYIQRRLVKALEDVMCKYDGTVRNSLGDIVQFVYGEDGLGGAHIEAQRVDIIACSDKQ 826

Query: 901  FDKAFRFE-MD---EENWNPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLATE 954
            F+  FR + MD   + + +P ++ Q  E I DL T    ++  + E ++L A R +   +
Sbjct: 827  FENKFRVDLMDPRPDTSISPEFLEQANELIGDLDT----QEYLEEEYRQLLAAR-EFLRK 881

Query: 955  IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDP 1014
                 +  + LP+N+ R++  A  TFK+     S++HP +V+ +V+ L +RL V+ GED 
Sbjct: 882  NKQDNEEVYQLPINVARILDTAMTTFKIRSGARSNLHPTDVIPSVNALLDRLIVIRGEDA 941

Query: 1015 LSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIG 1074
            LS E Q NATL F   LRS  A KR++ E+ L + AF+ V+GEIESRF +++  PGEM+G
Sbjct: 942  LSQEGQHNATLLFKAQLRSRLAFKRLVTENSLNKLAFQHVLGEIESRFCRAIANPGEMVG 1001

Query: 1075 CVAAQSIGEPATQMT 1089
             +AAQSIGEPATQMT
Sbjct: 1002 VLAAQSIGEPATQMT 1016


>gi|113707384|gb|ABI36591.1| RNA polymerase II largest subunit [Gyalideopsis vulgaris]
          Length = 1015

 Score = 1103 bits (2852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/1033 (53%), Positives = 724/1033 (70%), Gaps = 36/1033 (3%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P+FH+GF+  +  ++ +VC NC KIL DE +  F +AL+ R+PK R 
Sbjct: 1    ECPGHFGHIELAAPVFHVGFLTKIKKLLETVCHNCGKILVDESNPAFLEALRSRDPKRRF 60

Query: 135  KKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRK 194
              I   CK K  CE    +D    +  +  + + GGCG  QP++  E +K+   +KAQ+ 
Sbjct: 61   DMIWRLCKPKLICETSMPLDDDHSEKTKEPRHDHGGCGNIQPEVRREALKLTGTWKAQKG 120

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP- 253
             ++ + Q  E    K+ +T +  L V + IS ED + +GL+  YARP+WMI+ VLP+PP 
Sbjct: 121  DDEHEAQQAE----KKPITPQMALNVFRNISTEDIKTMGLSNDYARPEWMIITVLPVPPP 176

Query: 254  -----------PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT 302
                         +R  DDLT++L  IIR N N++R + +G+P H+I EF  LLQFH+AT
Sbjct: 177  PVRPSISMDGGAGMRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLIQEFENLLQFHVAT 236

Query: 303  YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
            Y DN + G P+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D
Sbjct: 237  YMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLD 296

Query: 363  QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK 422
            ++GVP SIA  LTYPETVTPYNI +L +LV  GP+  PG   AKY+IRD G+R+DLR+ K
Sbjct: 297  EVGVPRSIARTLTYPETVTPYNIHKLHQLVRNGPNEHPG---AKYVIRDSGERIDLRHHK 353

Query: 423  KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 482
            ++ D +L  G+KVERH+ DGDF++FNRQPSLHK S+MGHR+++MPYSTFRLNLSVTSPYN
Sbjct: 354  RAGDINLAYGWKVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYN 413

Query: 483  ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 542
            ADFDGDEMN+HVPQS ETRAEV +L MVP  IVSPQ N P+MGIVQDTL G  K+ +RD 
Sbjct: 414  ADFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDV 473

Query: 543  FIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA--AWHAD 600
            F+ K+  MNIL+W  D+DG +PQP I KP+PLWTGKQ+  L+IP  +NL R +   +   
Sbjct: 474  FLTKERVMNILLWVPDWDGVIPQPAIFKPKPLWTGKQILGLVIPPGLNLLRGSEEGFFPL 533

Query: 601  NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
            ND G+L AG        GEL+ G L KK++G S G +IH+I+ E GP+ A  F    Q +
Sbjct: 534  NDDGLLIAG--------GELMYGLLNKKSVGASGGGVIHIIFNEKGPEVAMNFFNGAQTV 585

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            VNYWLL N FSIGIGDTI D  T+  I   ++K K+ V+ + K A +  LE  PG  + E
Sbjct: 586  VNYWLLHNGFSIGIGDTIPDRNTIRQIEGAVNKQKDEVEEITKSATENQLESLPGMNVRE 645

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FE+KV++ LN ARD+AGS  +++L + NN   M  +GSKGS INISQ TA VGQQ+VEG
Sbjct: 646  TFESKVSKALNKARDDAGSVTEENLKDLNNAIQMARSGSKGSTINISQTTAVVGQQSVEG 705

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KR PFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+
Sbjct: 706  KRTPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTA 765

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D  +IE+Q +D +     +
Sbjct: 766  ETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFIYGEDGLDGSFIEAQKVDIIACSDQK 825

Query: 901  FDKAFRFEMDEEN----WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIA 956
            F + FR  + +++     +P ++  E    L+   + ++  + E ++L A R  L     
Sbjct: 826  FQRMFRVNLLDDDPETSISPEFL--ESATALRGDLQAQEHLEEEYKQLLAARESLRIN-R 882

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
              G+    LP+N+ R++  A+ TFK+     S++HP EV+  V++L +RL V+ G+D LS
Sbjct: 883  QDGNEQLQLPINVIRILDTAKTTFKIKDGARSNLHPAEVIPQVNQLLDRLVVIRGDDILS 942

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
             E Q NATL F   LRS  A KR++ E+ L R AF+ V+GEIESRFL++ V PGEM+G +
Sbjct: 943  KEGQHNATLLFKAQLRSRLAFKRLVLENSLNRLAFQHVVGEIESRFLKAAVNPGEMVGVL 1002

Query: 1077 AAQSIGEPATQMT 1089
            AAQSIGEPATQMT
Sbjct: 1003 AAQSIGEPATQMT 1015


>gi|83320460|gb|ABC02857.1| RNA polymerase II largest subunit, partial [Paraglomus occultum]
          Length = 847

 Score = 1102 bits (2849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/831 (64%), Positives = 662/831 (79%), Gaps = 11/831 (1%)

Query: 257  RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQ 316
            R  DDLTH+L  I++ N+N+RR E  G PAH+ISEF  LLQFH ATY DNE+ GQP+A Q
Sbjct: 22   RGEDDLTHKLVDILKANQNVRRCESEGQPAHVISEFETLLQFHCATYMDNEMAGQPQALQ 81

Query: 317  RSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTY 376
            +SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP I++D++GVP SIA NLTY
Sbjct: 82   KSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISVDEVGVPRSIARNLTY 141

Query: 377  PETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVE 436
            PE VT  NI+ L+ELV  GP   PG   AKY+IRD G+R+DL++ K++ +  L++G+KVE
Sbjct: 142  PELVTRLNIDHLQELVRNGPSEHPG---AKYVIRDTGERIDLKHYKRAGEVRLQIGWKVE 198

Query: 437  RHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 496
            RH++DGD V+FNRQPSLHKMS+MGHR+++MPYSTFRLNLSVT+PYNADFDGDEMNMH+PQ
Sbjct: 199  RHIDDGDIVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMHIPQ 258

Query: 497  SFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW 556
            S ET+AE++E+ MVPK IVSPQSN+PVMGIVQDTL   RK TKRD F+ +D+ MNILMW 
Sbjct: 259  SVETKAEIMEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFLTRDLVMNILMWV 318

Query: 557  EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL--FRTAAWHADNDKGILTAGDTLVR 614
             D+DG +P P ILKP P+WTGKQ+ ++IIPK +N    R +  H DN+   ++ GDT V 
Sbjct: 319  PDWDGHIPIPCILKPVPMWTGKQILSIIIPKGVNSDNLRHST-HPDNETSDISPGDTKVL 377

Query: 615  IEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGI 674
            IE GELLSG +CKKT+GTS   LIHVI +E+GP+AA+ FL   Q +VNYWLLQN FSIGI
Sbjct: 378  IEDGELLSGIVCKKTVGTSQQGLIHVIMQELGPEAAKNFLNGCQGVVNYWLLQNGFSIGI 437

Query: 675  GDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR 734
            GDTIAD  T+E+I  TIS AK+ V+ +I QAQ   LEP+PG T+ ++FENKVN+ LNTAR
Sbjct: 438  GDTIADKDTIESIAQTISNAKSRVQEIIIQAQQDKLEPQPGMTIRKTFENKVNKELNTAR 497

Query: 735  DEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPH 794
            D AG SA+KSL E NN+K MV +GSKGSFINISQM+ACVGQQNVEGKRIPFGF  RTLPH
Sbjct: 498  DAAGRSAEKSLGEYNNVKQMVISGSKGSFINISQMSACVGQQNVEGKRIPFGFKYRTLPH 557

Query: 795  FTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAME 854
            FTKDD+ PESRGFVENSYLRGLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+E
Sbjct: 558  FTKDDHSPESRGFVENSYLRGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALE 617

Query: 855  DIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEE-N 913
            D+MVKYDGTVRNSLGDVI+F YGEDG D  ++ESQTLDSL++  ++F+K +  ++ ++ +
Sbjct: 618  DVMVKYDGTVRNSLGDVIRFCYGEDGTDGCYVESQTLDSLRLSDADFEKKYYIDLRKDPD 677

Query: 914  WNPNYM---LQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLK 970
             NP+ +   + + I D  + K  +   D E  KL  DR  L   I  +GD+ WPLPVN+K
Sbjct: 678  LNPSLVDPRVWDRISDDGSDK-YQQHLDQEYSKLLEDRKILREFIFPNGDNKWPLPVNIK 736

Query: 971  RLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 1030
            RLI N+Q+TFK   R  SD+ P+E +  ++KL ERLKVV GED +S+EAQ+N+TL F IL
Sbjct: 737  RLIKNSQQTFKSHLRGGSDIDPIEAITDLNKLSERLKVVNGEDKISIEAQRNSTLLFQIL 796

Query: 1031 LRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            LRST A++R+++E+ L  +AF+W++GEIE RF +SLVAPGEM+G VAAQSI
Sbjct: 797  LRSTPATRRLIEEYHLDTQAFKWILGEIEERFQRSLVAPGEMVGTVAAQSI 847


>gi|168920044|gb|AAV54050.2| RNA polymerase II largest subunit [Boletellus projectellus]
          Length = 997

 Score = 1102 bits (2849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 561/1016 (55%), Positives = 718/1016 (70%), Gaps = 39/1016 (3%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALK-IRNPKNRLKKILDACKNKTKCEGGD- 151
            F+  V  I   +C NC K+ AD  D  F   ++ +R+PK R+      CK K  C+  D 
Sbjct: 1    FIVKVKKIFECICVNCGKLKADISDPNFADKIRHVRDPKARMAVAWSHCKTKMTCDTDDP 60

Query: 152  -EIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
             E  V G D +EP KK  GGCG  QP +  EG+K+  +YK  + +++D + L +P   K+
Sbjct: 61   KEEGVEG-DVDEP-KKGHGGCGHIQPLIRKEGLKLFVQYKRHKDEDEDLKSL-QP--DKR 115

Query: 211  TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-----------LPIPPPPVRPS 259
              T   V    K++SD D  L+GL+ +YARP+WMIL V           + +    +R  
Sbjct: 116  LFTPSEVYTTFKKMSDSDLHLIGLSDEYARPEWMILTVMPVPPPPVRPSIAVDGGAMRSE 175

Query: 260  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
            DDLT++L  II+ + N+RR E+ GAPAH+I+EF QLLQFH+ATY DN++ G P+A Q+SG
Sbjct: 176  DDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQLLQFHVATYMDNDIAGIPQALQKSG 235

Query: 320  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
            RP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT DP + +D++GVP SIA+NLTYPE 
Sbjct: 236  RPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPRSIAMNLTYPER 295

Query: 380  VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHL 439
            VTPYNI  L+ELV  GP   PG   A+Y++RD G+R+DLRY  K +D  L+ G+ VERHL
Sbjct: 296  VTPYNIAYLQELVRNGPSTYPG---ARYVVRDTGERIDLRY-NKRADAFLQYGWIVERHL 351

Query: 440  NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 499
             DGDFVLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVT PYNADFDGDEMNMH+PQS E
Sbjct: 352  KDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQSEE 411

Query: 500  TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 559
            TRAE+ ++  VP+ I+SPQ+N+PVMGIVQDTL G RK T RDTF++     NIL+W  ++
Sbjct: 412  TRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWQQVQNILLWVPEW 471

Query: 560  DGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGDTLVRIE 616
            DG VP P I+KP+PLWTGKQ+ +++IP+ IN+ R     + N   D G++        ++
Sbjct: 472  DGNVPTPAIIKPKPLWTGKQIISMVIPRGINIHRAPEPKSSNPLFDDGMM--------VD 523

Query: 617  KGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD 676
             GE+L G + KKT+G + G LIHV++ E GP+A R      Q +VN+WL  N FSIGIGD
Sbjct: 524  NGEILFGIVDKKTVGATQGGLIHVVFREKGPEATRSVFTGIQMVVNFWLFHNGFSIGIGD 583

Query: 677  TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDE 736
            TIA    ME I   I   K  V  +I+ A +  L+P PG T+ ESFE+KV + LN ARD+
Sbjct: 584  TIAGPNVMEFITRRIKDKKQQVAEIIEDAYNDRLKPMPGMTIRESFESKVERELNRARDD 643

Query: 737  AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFT 796
            +G  AQK+L E NN+K MVTAGSKGS+INISQM+ CVGQQ+VEG+RIPFGF  RTLPHFT
Sbjct: 644  SGQYAQKNLKEDNNVKQMVTAGSKGSYINISQMSVCVGQQSVEGRRIPFGFRHRTLPHFT 703

Query: 797  KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDI 856
            KDD+ PE+RGFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+
Sbjct: 704  KDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDV 763

Query: 857  MVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM-DEENWN 915
            MV YDGTVRNSLGD++QF+YGEDGMD  +IE Q +D+      EF+ ++R ++ D+E   
Sbjct: 764  MVCYDGTVRNSLGDLVQFIYGEDGMDGAFIERQKIDTFGTSDKEFEHSYRVDVTDKEGGF 823

Query: 916  PNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP--LPVNLKRLI 973
               +LQ  IDD  +  EL+   D E  +L  DR  L   I    D   P  LPVNL+R+I
Sbjct: 824  LPGVLQVGIDD--SSLELQAKLDEEYARLVEDRRLLRRFIFPHADGLTPHYLPVNLQRII 881

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
             +A + F +D R+PSD+ P   V+AV +L ERL  V G+DPLS E Q NA+L F + +R+
Sbjct: 882  QDATQIFHIDRRKPSDLEPSYTVDAVHQLTERLLSVCGDDPLSKEVQANASLTFRMHVRA 941

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1089
            T A++RVL+ + L REAFEWV+GEIE++F QSLV PGEM G +AAQSIGEPATQMT
Sbjct: 942  TLATRRVLELYHLNREAFEWVLGEIEAKFNQSLVNPGEMCGTLAAQSIGEPATQMT 997


>gi|120561207|gb|ABM26989.1| RNA polymerase II largest subunit, partial [Hydnum repandum]
          Length = 1010

 Score = 1100 bits (2845), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/1026 (53%), Positives = 718/1026 (69%), Gaps = 37/1026 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK-IRNPKNRLKKILDA 140
            H+ELA+P+FH+GF+  V  I+  VC  C ++  D  D  F + LK IR+ K R+ K+ D 
Sbjct: 1    HIELARPVFHVGFLGKVKKILECVCVQCGRLKIDFSDVSFVEKLKHIRDVKVRMTKVHDH 60

Query: 141  CKNKTKCEGGD-EIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            CK K  C+  + ++D        P    K GCG  QP +  E +K+   YK  + K+DD+
Sbjct: 61   CKGKMICDATEPDMDTEADQNAIPDALKKTGCGHVQPLIRKEALKLFLVYK--KIKDDDE 118

Query: 200  EQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV----------- 248
            + +   +  K+  TA  V   LK+IS+E  +L+GL+ +YARP+WMIL V           
Sbjct: 119  QDIRTQLPDKRQFTASDVYNTLKKISEEHLELMGLSVEYARPEWMILTVLPVPPPPVRPS 178

Query: 249  LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
            + +    +R  DDLT +L  +++ + ++R+ E+ GAP H+I+E+ QLLQFH+ATY DN++
Sbjct: 179  ISVDGGTMRSEDDLTFKLGDVLKASASVRKCEQEGAPPHVITEYEQLLQFHVATYMDNDI 238

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
             G P+A Q+SGRP+K+I SRLK KEGR+RGNLMGKRVDFS+RTVIT DP I +D++GVP 
Sbjct: 239  SGIPQAMQKSGRPVKAIRSRLKGKEGRLRGNLMGKRVDFSSRTVITGDPNIMLDEVGVPK 298

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIA+ LTYPE VTPYNI +L+ELV  GP   PG   A+Y++RD G+R+DLRY  K +D  
Sbjct: 299  SIAMTLTYPERVTPYNIAQLQELVRNGPREYPG---ARYVVRDTGERIDLRY-NKRADAF 354

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            L+ G+ VERHL DGD+VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVT PYNADFDGD
Sbjct: 355  LQYGWIVERHLRDGDYVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGD 414

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMNMHVPQS ETRAE+ ++  VP+ I+SPQ+N+PVMGIVQDTL G RK T RDTF++   
Sbjct: 415  EMNMHVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWSA 474

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGI 605
              NILMW  D+DG VP P +L P+PLWTGKQ+ ++ IP  IN+ R     + N   D G+
Sbjct: 475  VQNILMWVPDWDGNVPIPAVLAPKPLWTGKQILSMTIPVGINIVRAPEVSSPNPVEDDGM 534

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
            L        IE GE++ G + KKT+G + G L+HV++ E GP+A R      Q +VNYWL
Sbjct: 535  L--------IENGEIIYGIVDKKTVGAAQGGLVHVVFREKGPEACRGLFSGLQMVVNYWL 586

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
              N FSIGIGDTIAD KTM+ I + I+ AK  V   I+Q Q   ++ +PG T+ ESFE++
Sbjct: 587  FHNGFSIGIGDTIADEKTMDHITNRIAMAKAKVYKYIEQGQRDEIKAKPGMTIRESFESE 646

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            VN  LN  RD+ G  A+KSL   NN+K MV AGSKGSFINISQM+ACVGQQ+VEGKRIPF
Sbjct: 647  VNAELNICRDDTGRHAEKSLKNDNNVKQMVVAGSKGSFINISQMSACVGQQSVEGKRIPF 706

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF  RTLPHF KDDY PE+RGFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 707  GFKHRTLPHFAKDDYSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 766

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRLVKA+ED+ V YDGTVRNSLGD++QF+YGEDGMD  +IE Q +D+  +    F + +
Sbjct: 767  QRRLVKALEDVAVCYDGTVRNSLGDILQFIYGEDGMDGAFIERQRVDTYHLSNRAFYRKY 826

Query: 906  RFEMDEENWNPNY---MLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSS 962
            R ++  E+    +   +LQ  +D+     EL+   D   ++L+ADR  L   +  + D S
Sbjct: 827  RVDVIGEDVASGFSPGILQVGLDN--GTPELQRELDMXWEQLQADRKILREFVFGNSDPS 884

Query: 963  WP--LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
             P  LPVNL+R+I N+Q+ F +D R+ SD+ P+ ++  V  L ERL +V G D ++ E Q
Sbjct: 885  RPHYLPVNLRRIIQNSQQIFHIDRRKASDLDPIHIIAEVRNLGERLVIVRGNDNIAKELQ 944

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
             NATL F + +R + A + VL+EH L REAF+WVIGEIE++F Q+LV PGEM G +AAQS
Sbjct: 945  YNATLLFLMHMRGSLACRPVLQEHHLNREAFDWVIGEIEAKFNQALVNPGEMCGTLAAQS 1004

Query: 1081 IGEPAT 1086
            IGEPAT
Sbjct: 1005 IGEPAT 1010


>gi|351518437|gb|AEQ39959.1| RNA polymerase II largest subunit [Lecophagus sp. ATCC 56071]
          Length = 1000

 Score = 1096 bits (2834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/1019 (53%), Positives = 711/1019 (69%), Gaps = 38/1019 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELAKP+FHIGFM  +  ++ SVC NC K+L DE + +F  A++IR+P  R   +   C
Sbjct: 1    HIELAKPVFHIGFMTKIKRVLESVCVNCGKLLLDESNLQFADAMRIRDPIARFNAVWRLC 60

Query: 142  KNKTKCE----GGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKND 197
            + K  CE      D+ D      E+  K++ GGCG  QP +  +G+K+I  +K  +   D
Sbjct: 61   RAKNICESDAPADDDFDSNAAAAEKSKKRSHGGCGNAQPTIRKDGLKLIGMWKPSK---D 117

Query: 198  DQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVR 257
            + E+ P+P   K+ LT + VL + K ISDED   +GL+  YARP+WMIL  + +PPPPVR
Sbjct: 118  EDEENPQPT--KKVLTPQDVLNIFKHISDEDILRMGLSKDYARPEWMILTCMAVPPPPVR 175

Query: 258  PS-------------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
            PS             DDLT +L+ II+ N NLRR E+ G+PAH+++EF  LLQFH+AT+ 
Sbjct: 176  PSISVEGMGGGMRGEDDLTFKLSDIIKANVNLRRCEQEGSPAHVVAEFESLLQFHVATFM 235

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++
Sbjct: 236  DNDIAGQPQAVQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEV 295

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPETVTPYNI RL +LV  GP+  PG   AK +IRD G+R+DLR+ K++
Sbjct: 296  GVPRSIARTLTYPETVTPYNIHRLHQLVRNGPNDHPG---AKCVIRDTGERIDLRHHKRA 352

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             +  L+ G+KVERH+ DGDF++FNRQPSLHK S+MGHRI+++PYSTFRL+LSVTSPYNAD
Sbjct: 353  GEISLQYGWKVERHIIDGDFIIFNRQPSLHKESMMGHRIRVLPYSTFRLHLSVTSPYNAD 412

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAEV +L MVP  IVSPQ N P+MGIVQDTL G  K+T+RD F+
Sbjct: 413  FDGDEMNLHVPQSEETRAEVSQLCMVPLQIVSPQRNGPLMGIVQDTLCGVYKMTRRDVFL 472

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            +++  MNIL+W   +DG +P P I+KPR  WTGKQV +LIIP  INL +T+      D G
Sbjct: 473  DRNAVMNILLWVPGWDGVIPPPAIIKPRARWTGKQVISLIIPPNINLVKTSDMPPLTDDG 532

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +         +  GELL G L KK +G S G LIH+I+ E G      F    Q + NYW
Sbjct: 533  LW--------VSNGELLFGLLSKKVVGASQGGLIHIIYNEKGSKTCMGFFNGCQLVTNYW 584

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTI DAKT++ I + +   K  V+ + ++AQ+ +LE  PG  + E+FEN
Sbjct: 585  LLHNGFSIGIGDTIPDAKTVKRIQEIVDAKKAEVEEVTRKAQENTLEALPGMNIRETFEN 644

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
            KV++ LN ARDEAGS+ +KSL + NN   M  +GSKGS INISQM+A VGQQ+VEGKRIP
Sbjct: 645  KVSKSLNGARDEAGSATEKSLKDLNNAIQMARSGSKGSNINISQMSAVVGQQSVEGKRIP 704

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF  RTLPHFTKDDY  ESRGFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 705  FGFKYRTLPHFTKDDYSAESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 764

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+ED+M KYDGTVRNSLGD++ F YGEDG+D   IE Q +D +    + F++ 
Sbjct: 765  IQRRLVKALEDVMAKYDGTVRNSLGDIVTFCYGEDGLDGQHIELQKVDIITCSDAVFEEK 824

Query: 905  FRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSS 962
            F+ ++ +   +  P Y+  E   +++    ++ V D E  +L   R     E+  S D  
Sbjct: 825  FKIDLMDPIPSIPPEYL--EVASEIQGDVNIQLVLDQEFDRLLHARRTF-REVFKSADDQ 881

Query: 963  WPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKN 1022
              LP+N+ R++ NA+  F++     SD+HP+E +  V +L  RL +V G D LS+EAQ N
Sbjct: 882  HQLPINVLRILDNAKTIFRIKKGGRSDLHPLETIAKVQELMSRLVIVRGSDRLSLEAQDN 941

Query: 1023 ATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            AT  F   ++   A KR++ E+ +T  A +WV+GE+E+RF +++V PGEM+G +AAQSI
Sbjct: 942  ATTLFRAHVQGRLAFKRLVMEYHMTNVALDWVLGEVENRFARAIVPPGEMVGVLAAQSI 1000


>gi|110669631|gb|ABG81910.1| RNA polymerase II largest subunit [Peltigera degenii]
          Length = 1011

 Score = 1095 bits (2833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/1034 (54%), Positives = 727/1034 (70%), Gaps = 43/1034 (4%)

Query: 76   CPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLK 135
            CPGHFGH+ELA P+FH+GFM  +  ++ +VC NC KIL DE +  FK AL+ R+PK R  
Sbjct: 1    CPGHFGHIELAVPVFHVGFMTKIKKLLETVCHNCGKILLDESNADFKNALRFRDPKRRFD 60

Query: 136  KILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKK 195
             I  ACK K  C+     D    D  +  K + GGCG +QP++  EG+K+   +KA  +K
Sbjct: 61   AIWKACKPKMVCDMLVLADDDAPDKSQEPKHDHGGCGNRQPEIRKEGLKLTGTWKA--RK 118

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
            +D++ Q     + K+ +T +  L + + IS ED Q +GLN  YARP+WMI+ VLP+PPPP
Sbjct: 119  DDEESQ-----DEKRPITPQNALNIFRHISSEDIQKMGLNVDYARPEWMIITVLPVPPPP 173

Query: 256  ------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                        +R  DDLT++L  IIR N N+R  E  G+PAH+++EF QLLQFH+ATY
Sbjct: 174  VRPSIAVDGGNGMRGEDDLTYKLGDIIRANGNVRTCEAEGSPAHVVAEFEQLLQFHVATY 233

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D+
Sbjct: 234  MDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDE 293

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVTPYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K+
Sbjct: 294  VGVPRSIARTLTYPETVTPYNIQKLHQLVKTGPNDHPG---AKYVIRDTGERIDLRHHKR 350

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            + +  L+ G+KVERH+ DG           +K S+MGHR+++MPYSTFRLNLSVTSPYNA
Sbjct: 351  AGEISLQYGWKVERHIIDGXXXXXXXXXXXYKESMMGHRVRVMPYSTFRLNLSVTSPYNA 410

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETRAEV +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 411  DFDGDEMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 470

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD--N 601
            + K++ MNIL+W  D+DG +PQP ILKPRP WTGKQ+ +LIIP  +NLFR+++      N
Sbjct: 471  LSKELVMNILLWVPDWDGVIPQPAILKPRPKWTGKQIISLIIPPGLNLFRSSSEGPSPLN 530

Query: 602  DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            D G+  +G        GEL+ G   KK++G ++  ++H+I+ E GPDAA  F    Q +V
Sbjct: 531  DDGLQVSG--------GELMYGLFNKKSVGATSNGVVHIIFNEKGPDAAMSFFNGCQTVV 582

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FSIGIGDTI D  T++ I   +++ K  V  + + A +  LEP PG  + E+
Sbjct: 583  NYWLLHNGFSIGIGDTIPDRVTIQAIEAAVNEQKAEVAEITRSATENELEPLPGMNVRET 642

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV + LN ARD+AG+  +KSL ++NN   M  +GSKGS INISQMTA VGQQ+VEGK
Sbjct: 643  FESKVQKALNKARDDAGTVTEKSLKDTNNATQMARSGSKGSTINISQMTAVVGQQSVEGK 702

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM  REGLIDTAVKT+E
Sbjct: 703  RIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMARREGLIDTAVKTAE 762

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D V IE Q +D +    + F
Sbjct: 763  TGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEGQLVDIITCSDARF 822

Query: 902  DKAFRFE-MD---EENWNPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEI 955
            ++ FR + MD   E + +P+++ Q  E   DL    E++   D E   L+A R  L  + 
Sbjct: 823  ERKFRVDLMDPRPETSISPDFLEQANEMAGDL----EIQGYLDEEYDHLQAARDFLRKDK 878

Query: 956  ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPL 1015
                +  + LP N+ R++  A+ TFK+     S++HP EV+  V  L +RL +V G+D L
Sbjct: 879  RDDLEQVY-LPTNIIRILDTAKTTFKIKDGARSNLHPAEVIPQVQDLLDRLVIVRGDDSL 937

Query: 1016 SVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGC 1075
            S EAQ+NAT+ F   LRS  A KR++ E+ L + AF+ V+GEIESRF ++ V PGEM+G 
Sbjct: 938  SREAQQNATILFKAQLRSRLAFKRLVIENSLNKLAFQHVLGEIESRFCKAAVNPGEMVGV 997

Query: 1076 VAAQSIGEPATQMT 1089
            +AAQSIGEPATQMT
Sbjct: 998  LAAQSIGEPATQMT 1011


>gi|120561176|gb|ABM26983.1| RNA polymerase II largest subunit [Vairimorpha necatrix]
          Length = 1255

 Score = 1095 bits (2832), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 585/1290 (45%), Positives = 810/1290 (62%), Gaps = 126/1290 (9%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANM 73
            ++  +QFG+ SP+EIR+ SVVQI H ET E G PK GGL D ++GT +R   C +C  + 
Sbjct: 9    RISSIQFGLFSPEEIRKSSVVQIIHPETMENGFPKSGGLIDLKMGTTERAFLCSSCEKDN 68

Query: 74   AECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNR 133
              CPGHFGH+EL KPMFH+G+M  +  I+  VCF CS++            +  +N K  
Sbjct: 69   FSCPGHFGHIELTKPMFHVGYMTKIKKILECVCFYCSRL-----------KISTKNLKKD 117

Query: 134  LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQR 193
            L  + +  K K+ CEG  EI   G++G         GCG +QP +  E M +IA  K + 
Sbjct: 118  LNFVWNISKTKSVCEG--EI---GENGFT-------GCGNKQPVIKKELMSLIAFMKGE- 164

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
                      E  + K  L  ERV  +LK+I + D   LG + K+ +P+W+IL VL +PP
Sbjct: 165  ----------EESDGKVILNGERVHNILKKIVNXDAVFLGFDQKFTKPEWLILTVLLVPP 214

Query: 254  PPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
            P VRPS          DDLTH+LA I++ N  L++ E  GAP H++ ++ QLLQFHIAT 
Sbjct: 215  PSVRPSIVMEGMLRAEDDLTHKLADIVKANTYLKKYELEGAPGHVVRDYEQLLQFHIATM 274

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSAR+VITPDP I++++
Sbjct: 275  IDNDISGQPQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITPDPNISVEE 334

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP  IA   T+PE +TP+NI+RL +LV  GP+  PG   A Y+IR+DGQR+DL +   
Sbjct: 335  VGVPSEIAKIHTFPEIITPFNIDRLTKLVSNGPNEYPG---ANYVIRNDGQRIDLNF--N 389

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
              D  LE GY VERH+ DGD VLFNRQPSLHKMS+M H +++M   TFRLNLS  SPYNA
Sbjct: 390  RGDIKLEEGYVVERHMQDGDVVLFNRQPSLHKMSMMAHFVRVMEGKTFRLNLSCVSPYNA 449

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+H+PQS+ ++AE+ EL +V K ++SPQSN+PVMGIVQD+L   R  T RD+F
Sbjct: 450  DFDGDEMNLHMPQSYNSKAELEELCLVSKQVLSPQSNKPVMGIVQDSLTALRLFTLRDSF 509

Query: 544  IEKDVFMNIL-----------------MWWED-FDGKVPQ------------PTILKPRP 573
             ++   M +L                 M  +D F   +              P I  P+ 
Sbjct: 510  FDRRETMQLLYSVNINNYEFTDSSKLIMTHDDSFXNNLHTEESSNIMKILNFPAISYPKK 569

Query: 574  LWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTS 633
            LWTGKQ+ + I+P   N       +  N++ +    D+ V I  GE+LSG + KK +G++
Sbjct: 570  LWTGKQILSYILP---NTIYNGKSNEHNEEDLENVEDSYVIIRNGEILSGIIDKKAVGST 626

Query: 634  TGSLIHVIWEEVGPDAARKFLGHTQWLVN-YWLLQNAFSIGIGDTIADAKTMETINDTIS 692
             G LIH+I  + GPD    F    Q ++N Y+   NAFSIGIGD IAD +TM  +  +I 
Sbjct: 627  QGGLIHIIANDFGPDRVTCFFDDAQKMMNLYFATINAFSIGIGDAIADKETMSQVQRSIE 686

Query: 693  KAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLK 752
             AK  V  +I +AQ   LE  PG +M ESFE++VN +LN  RD +G+SA KSLS  NN++
Sbjct: 687  TAKEQVNEIIVKAQKNKLERLPGMSMRESFESQVNYILNKPRDISGASASKSLSFCNNMR 746

Query: 753  AMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSY 812
             MV AGSKGSFINISQ+TAC+GQQNVEGKRIPFGF  R+LPHF+K DY  +SRGFVENSY
Sbjct: 747  TMVLAGSKGSFINISQVTACLGQQNVEGKRIPFGFNYRSLPHFSKADYSGKSRGFVENSY 806

Query: 813  LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 872
            ++G+TP+EFFFHAMGGREGLIDTA+KT+ETGYIQRRLVKAMED  V  D +VR + G + 
Sbjct: 807  VKGITPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVTLDRSVRGADGFIY 866

Query: 873  QFLYGEDGMDSVWIESQ--------TLDSLKMKKSEFDKAF---RFEMDEENWNPNYMLQ 921
            Q+ YGEDG D+ ++E Q        T D +  K       F    F + +EN      + 
Sbjct: 867  QYEYGEDGFDATFLEMQKMTHDDVATKDDVSFKNLHLXDMFTDLNFAIKKEN------VT 920

Query: 922  EYIDDLKTIKELRDVFDAEVQKLEADRYQLATE-IATSGDSSWPLPVNLKRLIWNAQKTF 980
            + I  L T        D  +QK+  D ++   E +      +   P N +R+I  A   +
Sbjct: 921  DQIYKLLTT-------DVNLQKILYDEFEWLNENVKKYEKMNIASPCNFQRIINLA--IY 971

Query: 981  KVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRV 1040
            K D R+  D+ P  +++ +  L E L +                L   IL++   + KR+
Sbjct: 972  KFDCRK-GDISPYLILDTJKNLIENLPI--------------KNLLIEILIKYNLSIKRI 1016

Query: 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
            L E++L+ EA+ W++ EI+ + L+S+++P EM+G +AAQS+GEPATQMTLNTFH AGVSA
Sbjct: 1017 LNEYKLSLEAYNWILKEIKXKILKSIISPNEMVGTLAAQSVGEPATQMTLNTFHLAGVSA 1076

Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATE 1160
             N+T+GVPRL+EIINVAK IKTP + ++LK   N T E AK +Q  LE++ ++S+ E +E
Sbjct: 1077 -NITMGVPRLKEIINVAKNIKTPCMKIYLKDPFNKTLEMAKKIQSELEFSDIKSLCEFSE 1135

Query: 1161 VWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVA 1220
            ++YDP    T I+ED +FV+ Y++ PDE +   K+  +++R++++R  +V K L +  + 
Sbjct: 1136 IYYDPVIEDTSIKEDKDFVQEYFDFPDEHLDFSKMPKFIIRLKIDRIKLVSKNLKLENIV 1195

Query: 1221 EKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
            + +++ F +    I +D+N+  LI+RIR +
Sbjct: 1196 KSLHEAFPNIFHIIRSDENSQNLIIRIRCI 1225


>gi|110669625|gb|ABG81907.1| RNA polymerase II largest subunit [Echinoplaca strigulacea]
          Length = 1017

 Score = 1093 bits (2828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/1028 (53%), Positives = 724/1028 (70%), Gaps = 24/1028 (2%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P+FH+GF+  +  ++ +VC NC KIL DE +  F  AL+ R+PK R 
Sbjct: 1    ECPGHFGHIELAVPVFHVGFITKIKKLLETVCHNCGKILVDESNPAFADALRYRDPKRRF 60

Query: 135  KKILDACKNKTKCEGGDEI-DVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQR 193
              +   CK K  CE    + D    +  +  + + GGCG  QP++  EG+++   +K Q+
Sbjct: 61   DAVWRLCKPKMICETTSMLEDDQANEESKKTRHDHGGCGNVQPEIRREGLRLNGTWKVQK 120

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
               +++   PE    K+ +T +  L V   IS +D Q +GL+  YARP+WMI+ VLP+PP
Sbjct: 121  GDEENENAQPE----KRQITPQMALNVFHHISSQDIQRMGLSNDYARPEWMIITVLPVPP 176

Query: 254  PP------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIA 301
            PP            VR  DDLT++L  IIR N N+RR E  G+PAH+++EF QLLQFH+A
Sbjct: 177  PPVRPSVAVDGGNGVRGEDDLTYKLGDIIRANGNVRRCEAEGSPAHVVNEFEQLLQFHVA 236

Query: 302  TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 361
            TY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++
Sbjct: 237  TYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSL 296

Query: 362  DQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYL 421
            D++GVP S+A  LTYPETVTPYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+ 
Sbjct: 297  DEVGVPRSVARTLTYPETVTPYNIQKLHQLVKNGPNDHPG---AKYVIRDTGERIDLRHH 353

Query: 422  KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPY 481
            K++ +  L+ G+KVERH+ DGDF++FNRQPSLHK S+MGHR+++MPYSTFRLNLSVTSPY
Sbjct: 354  KRAGELSLQYGWKVERHITDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPY 413

Query: 482  NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRD 541
            NADFDGDEMN+HVPQS ETR+EV  L  VP+ I+SP  N P+MGIVQD+L G  K+T++D
Sbjct: 414  NADFDGDEMNLHVPQSEETRSEVANLCWVPRQILSPAKNGPLMGIVQDSLCGFYKMTRKD 473

Query: 542  TFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN 601
             ++  +  MNIL+W  D+DG +PQP I+KP P WTGKQV +LI+P+ ++L R       N
Sbjct: 474  VYLNYEDVMNILLWVPDWDGTIPQPAIIKPIPKWTGKQVVSLILPEGLSLHRVDG--GKN 531

Query: 602  DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            + G     D  V I+ GEL+ G + K+ +G + G ++HV   E G DAA KF   +Q ++
Sbjct: 532  EPGFFPRTDVHVLIQNGELVFGQMTKQVVGAAGGGVVHVTTAEFGFDAALKFFKGSQVVI 591

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FS+GIGDTI D  T++ I +  +  K  VK +   AQ   LEP PG T+ E+
Sbjct: 592  NYWLLHNGFSVGIGDTIPDKSTVDAIGEIFTSKKEKVKEITAMAQANELEPLPGMTVRET 651

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+ V + LN AR+E+GS+  K L + NN  AM  +GSKGS INI+QM+A VGQQNVEG+
Sbjct: 652  FESLVAKELNDARNESGSTVVKRLKDLNNTLAMSNSGSKGSQINIAQMSAAVGQQNVEGQ 711

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
                GF  R+LPHFTKDDY PES GF+ENSYLRGLTP EF+FHAM GREGLIDTAVKT+E
Sbjct: 712  TYSLGFAYRSLPHFTKDDYSPESGGFIENSYLRGLTPTEFYFHAMSGREGLIDTAVKTAE 771

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVK+MED++VKYDGTVRNSLGD++QF+YGEDGMD    E+Q+LD LK     F
Sbjct: 772  TGYIQRRLVKSMEDLIVKYDGTVRNSLGDIVQFVYGEDGMDGSHAENQSLDFLKSSHEVF 831

Query: 902  DKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDS 961
            +K +R ++ + +    + L E  +      +++D+FDAE QKLE  R  L        + 
Sbjct: 832  EKHYRVDLSKADTGLRHDLIEDQNIFNADSDVQDLFDAEFQKLEEARLYLRK--TRGSED 889

Query: 962  SWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQK 1021
              P+PVN+ R+I  A++ FK+ P   SD+ P EV+ AV  L +RL VV G+DP+SVEAQ+
Sbjct: 890  RLPIPVNITRIIETAKRIFKIRPGNRSDLQPAEVIPAVIALLDRLIVVQGDDPISVEAQQ 949

Query: 1022 NATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            NATL     +RS  A KR++ EH L + +F+ V+GEIESRF ++LV PGEMIG +AA SI
Sbjct: 950  NATLILKAHIRSRLAFKRLVNEHNLNKLSFQHVLGEIESRFSRALVNPGEMIGVIAAXSI 1009

Query: 1082 GEPATQMT 1089
            GEPATQMT
Sbjct: 1010 GEPATQMT 1017


>gi|113707380|gb|ABI36589.1| RNA polymerase II largest subunit [Flavoparmelia caperata]
          Length = 1008

 Score = 1090 bits (2819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/1030 (54%), Positives = 728/1030 (70%), Gaps = 45/1030 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            +ELA     +GFM  +  ++ +VC NC KIL DE +  F  A++ R+PK R   +   CK
Sbjct: 1    IELAVACLLVGFMTKIKKLLETVCHNCGKILVDESNPAFADAIRRRDPKKRFDMVWRLCK 60

Query: 143  NKTKCE---GGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
             K  CE     DE D P    +EP K + GGCG  QP++  EG+++   +KAQ+   +++
Sbjct: 61   PKMICETTMALDE-DAPSDKTKEP-KHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENE 118

Query: 200  EQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV--- 256
             Q PE    K+ +T +  L + + IS ED + +GL+  YARP+WMI+ VLP+PPPPV   
Sbjct: 119  GQQPE----KKPITPQMALNIFRHISTEDIKRMGLSNDYARPEWMIITVLPVPPPPVRPS 174

Query: 257  ---------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNE 307
                     R  DDLT++L  IIR N N+RR E  G+PAH+++EF QLLQFH+ATY DN+
Sbjct: 175  ISVDGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDND 234

Query: 308  LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 367
            + GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP
Sbjct: 235  IAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVP 294

Query: 368  WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 427
             SIA  LTYPETVTPYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ + 
Sbjct: 295  RSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG---AKYVIRDTGERIDLRHHKRAGEI 351

Query: 428  HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDG 487
             L+ G+KVERH+ DGD+++FNR P  HK S+MGHR+++MPYSTFRLNLSVTSPYNADFDG
Sbjct: 352  SLQYGWKVERHIVDGDYIIFNRHPXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDG 411

Query: 488  DEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
            DEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  K+ +RD F+ K+
Sbjct: 412  DEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLSKE 471

Query: 548  VFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA--AWHADNDKGI 605
              MNIL+W  D+DG +PQP I+KP  +WTGKQ+ +LIIP  +N+ R +   +   ND G+
Sbjct: 472  QVMNILLWVPDWDGVIPQPAIVKPLAMWTGKQILSLIIPTGMNILRVSEEGFSPLNDDGL 531

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
            L +G        GEL+ G L KK +G S G +IH+++ E GP+AA  F    Q +VNYWL
Sbjct: 532  LISG--------GELMYGLLHKKIVGASGGGVIHIVFNEKGPEAAMSFFNGAQTVVNYWL 583

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGDTI D  T++ I + ++  K  V  + + A +  LE  PG  + E+FE+K
Sbjct: 584  LHNGFSIGIGDTIPDRHTIQQIENAVNNQKAEVLEIPRSATENELESLPGMNVRETFESK 643

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            V++ LN ARD+AG+  +KSL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPF
Sbjct: 644  VSKALNKARDDAGAVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPF 703

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 704  GFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYI 763

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D V IE Q +D +     +F++ F
Sbjct: 764  QRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEQQRVDVILCSTKQFERKF 823

Query: 906  RFE-MD---EENWNPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSG 959
            R + MD   E + +P ++ Q  E I D++T K L    D E ++LE DR +L  +I    
Sbjct: 824  RVDLMDSQPETSISPEFLEQANEMIGDVETQKHL----DDEYRQLEKDRVEL-RKIRQDD 878

Query: 960  DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEA 1019
              +  LP+N+ R++  A+ TFK+     S++HP EV+  V +L +RL VV G D LS EA
Sbjct: 879  TENLQLPLNVLRILETAKTTFKIKTGARSNLHPAEVIPQVQELLDRLVVVRGTDKLSEEA 938

Query: 1020 QKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQ 1079
            Q NATL F I LRS  A KR++ E+ L + AF+ V+GEIESRF ++ V PGEM+G +AAQ
Sbjct: 939  QHNATLLFKIQLRSRLAFKRLVMENSLNKLAFQHVLGEIESRFCRAAVNPGEMVGVLAAQ 998

Query: 1080 SIGEPATQMT 1089
            SIGEPATQMT
Sbjct: 999  SIGEPATQMT 1008


>gi|83320458|gb|ABC02856.1| RNA polymerase II largest subunit, partial [Endogone pisiformis]
          Length = 845

 Score = 1089 bits (2817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/827 (62%), Positives = 647/827 (78%), Gaps = 5/827 (0%)

Query: 257  RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQ 316
            R  DDLTH+L+ I++ N+N+RR E  GAP H++ EF QLLQFH+ATY DN++ GQP+A  
Sbjct: 22   RGEDDLTHKLSDILKANQNVRRCETEGAPVHVVQEFEQLLQFHVATYMDNDIAGQPQALH 81

Query: 317  RSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTY 376
            +SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP + +D++GVP SIA NLTY
Sbjct: 82   KSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLMLDEVGVPRSIARNLTY 141

Query: 377  PETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVE 436
            PE VTPYNI++L+ +V  GP   PG   AKY+IRD G+R+DLRY K++ D  L  GYKVE
Sbjct: 142  PEIVTPYNIDKLQLMVRNGPTEHPG---AKYVIRDTGERIDLRYHKRAGDIPLSYGYKVE 198

Query: 437  RHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 496
            RH+NDGD V+FNRQPSLHKMS+MGHRI++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ
Sbjct: 199  RHINDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 258

Query: 497  SFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW 556
            S ETRAE+ E+  VPK IVSPQSN PVMGIVQDTL G RK TKRD F+ K++ MNI+++ 
Sbjct: 259  SVETRAEITEICRVPKQIVSPQSNXPVMGIVQDTLCGIRKFTKRDCFLTKEMVMNIVLYV 318

Query: 557  EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIE 616
              +DG++P   ILKP+P+WTGKQ+ +++IP+ IN     + H + +   ++ GDT V IE
Sbjct: 319  PAWDGQIPAXAILKPKPMWTGKQIVSMVIPEXINCDTFHSSHPEAENTWMSPGDTRVHIE 378

Query: 617  KGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD 676
             G+L+ G +CKKT+GT+ G LIH I  E+G  AAR FL  TQ +VN+WLL + FSIGIGD
Sbjct: 379  DGDLICGIVCKKTVGTADGGLIHTIVNELGHTAARDFLSGTQTVVNFWLLNHGFSIGIGD 438

Query: 677  TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDE 736
            TIAD +TM +I + IS AK+ V ++I  AQ   LE EPG T+ ESFE KVNQ LN ARD+
Sbjct: 439  TIADKETMNSITNIISTAKSRVSDIILAAQQDKLECEPGMTIRESFEAKVNQALNKARDD 498

Query: 737  AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFT 796
            AG  AQ SL E NN+K MV +GSKGSFINISQM+ACVGQQNVEGKRIP+GF  RTLPHFT
Sbjct: 499  AGKKAQASLREDNNVKQMVVSGSKGSFINISQMSACVGQQNVEGKRIPYGFKFRTLPHFT 558

Query: 797  KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDI 856
            KDD+ PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+ED+
Sbjct: 559  KDDHSPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDV 618

Query: 857  MVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM--DEENW 914
            MVKYDGTVRNSLGDVIQF YGEDGMD+ ++E Q L SL  K+++F++ +R ++   +   
Sbjct: 619  MVKYDGTVRNSLGDVIQFCYGEDGMDACFVERQKLHSLDCKQTDFERRYRLDVLNTKGGL 678

Query: 915  NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIW 974
             PN +  +    ++  ++++ + D E Q+L+ DR  L+  I  +GD  WPLP NL+RLI 
Sbjct: 679  KPNTLEFDVQRQIEGNEDVQGLLDEEFQQLQEDRDTLSKFIFKTGDGKWPLPTNLQRLIT 738

Query: 975  NAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRST 1034
            NAQ+ F +D R+PSD++P+ ++E V KL E L VV G D +SVEAQ+NATL + ILLRST
Sbjct: 739  NAQQIFHIDRRKPSDLNPVNIIEGVRKLSEELLVVRGSDKISVEAQRNATLLYQILLRST 798

Query: 1035 FASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            F++KRVL+E  L   AF +V+GEI+SRFL S+VAPG M+G +AAQSI
Sbjct: 799  FSTKRVLEEFHLNSAAFTYVLGEIKSRFLTSVVAPGGMVGTIAAQSI 845


>gi|401426590|ref|XP_003877779.1| RNA polymerase ii largest subunit [Leishmania mexicana
            MHOM/GT/2001/U1103]
 gi|322494025|emb|CBZ29319.1| RNA polymerase ii largest subunit [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1662

 Score = 1089 bits (2816), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 620/1508 (41%), Positives = 878/1508 (58%), Gaps = 139/1508 (9%)

Query: 6    PYSPAEVA--KVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRK 63
            P  P+++A  KV  VQF +    +I+  +   IEH ++ E G+P  GG++D R+GT D +
Sbjct: 6    PLPPSQMALQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYEHGQPVRGGINDLRMGTTDFE 65

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
              CETC     ECPGHFG++ELA+P+F+I     VL  ++ VC  C  +L D +D    +
Sbjct: 66   YSCETCGLKHPECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTNDPSEMK 125

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
             +      NRL+ +   C +  K       D+ G +G+            +QP++     
Sbjct: 126  KIAHLQGLNRLRMVAKLCGSVCK----RTKDIQGCEGK-----------GRQPRIG---- 166

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
            + +  Y   + K   +EQ            AE    VL R+SD D  ++G +P++  P  
Sbjct: 167  RFVGIYPGLQIKVTQEEQ-------DYVWHAENARQVLDRVSDSDALIMGFDPRFCHPRD 219

Query: 244  MILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            +IL VLPIPPP VRP+         D+LTHQ+  I++ N  LR+ + +G  A +    A 
Sbjct: 220  LILTVLPIPPPQVRPAVAFGSAKSDDELTHQIMSIVKRNIQLRKDKESGVKAAVDRSRA- 278

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQ H+AT+F+N       A     + +KS+  RLK K GR+RGNLMGKRVDFSARTVIT
Sbjct: 279  LLQEHVATFFNNASTYYKPAKVGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVIT 338

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP I++D++GVP+S+A+ LT+PE V   N +RL E V+   +P      A YIIR +G 
Sbjct: 339  GDPNIDVDEVGVPFSVAMTLTFPERVNVINRKRLTEFVQRTVYP-----SANYIIRPNGN 393

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
               L  +K  S  HL++G  VERH+ DGD VLFNRQP+LH+MS+MGHR++++ Y+TFRLN
Sbjct: 394  VTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLN 453

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LS T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGIVQD+LLG 
Sbjct: 454  LSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGS 513

Query: 535  RKITKRDTFIEKDVFMNILMW---WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
             ++T +DTF++K    ++ +W   WE     +P P ILKPRPLWTGKQ+F+LI+P ++N 
Sbjct: 514  YRLTDKDTFVDKYFIQSVALWLDLWE-----LPIPAILKPRPLWTGKQIFSLILP-EVN- 566

Query: 592  FRTAAWHADN--DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
                  H  +  DK      D  + I++G+LL G + K  +G + GSLIHVI+ E G D 
Sbjct: 567  ------HPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDE 620

Query: 650  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
              KF+   Q +  Y+    AFS+G+ DT+ADA T++ +N+ + K + +V+ +   A +  
Sbjct: 621  VAKFINGVQRITTYFNYCFAFSVGVQDTVADATTLKEMNNVLHKTRQSVEKIGAAANNGK 680

Query: 710  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
            L  + G ++++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKGS +NI Q+
Sbjct: 681  LTRKAGMSLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQI 740

Query: 770  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
               VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EF+FH M GR
Sbjct: 741  AVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMATRGYVEGLQPHEFYFHTMAGR 800

Query: 830  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE-S 888
            EGLIDTAVKTS+TGY+QR+LVKA+ED+   YDGTVRN+  ++IQ  YGEDG+D   IE +
Sbjct: 801  EGLIDTAVKTSDTGYLQRKLVKALEDVHASYDGTVRNANQELIQLAYGEDGLDGARIEGN 860

Query: 889  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRD-----VFDAEVQK 943
            Q      M  SE  + +R+E ++E      M   Y+D       LRD         E  +
Sbjct: 861  QAFPIPHMTNSEMAEKYRYEYNDEGSFSENMGGHYMDPFVRDSLLRDPQSVLKLQEEFDQ 920

Query: 944  LEADRY--QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
            L  DR   +L  ++         LPVN+ RLI NA+ T      + S+++P+ V+  V +
Sbjct: 921  LMKDRAMSRLVIDMEDKNKLKMNLPVNVARLIQNARTTMG-KRSQVSNLNPITVINRVRE 979

Query: 1002 LQERL-KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAF 1051
            LQE L ++ P           + LS +    A   F I LR    SKRVLKE++L  +AF
Sbjct: 980  LQEDLVQLFPSYHKDYNGRFVNVLSQQRVARALTLFGIHLRQILGSKRVLKEYKLNDKAF 1039

Query: 1052 EWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLR 1111
            E+++ EI +++ QSL+ PGE+IG +AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL 
Sbjct: 1040 EYLLKEIRTKYQQSLITPGEIIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLL 1099

Query: 1112 EIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTI 1171
            E++NV+K  +  S++V L       + +A+  Q  +EY TL ++T   ++ YDPDP  T+
Sbjct: 1100 ELLNVSKNQRNASVAVCLIREYQK-RNKAQEAQQFIEYCTLANITTTVQIIYDPDPRNTV 1158

Query: 1172 IEEDVEFVK-SYYEMPDEDIAPEKI---SPWLLRIELNREMMVDKKLSMAAVAEKINQEF 1227
            + ED E ++     M +ED  P+     SP++ R+ L+ ++  DK+L+M  V   + Q  
Sbjct: 1159 VAEDEEMIRWEQAVMNEEDEEPDAEQPPSPFIARLILDNDLFNDKRLNMKDVKSAVRQ-V 1217

Query: 1228 DDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV- 1286
            DD      N +N  + I+R+R      P+     +S      L K  + +L  + LRG+ 
Sbjct: 1218 DDTYMVQANMENDGQRIVRLR------PRKCTGADSVPA---LTKAVAQLLQSVHLRGIP 1268

Query: 1287 ---------------------------------------NLLAVMCHED---VDARRTTS 1304
                                                     + V+  E    +D  +T+S
Sbjct: 1269 GIKKTLLKEGNTFRVDPETGGIKNESSWMVDTEGTALQRIFVGVVNSEGKNIIDFSKTSS 1328

Query: 1305 NHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGI 1364
            N + E++ VLGIEA RR LL ELR      G  +NYRH  IL DTM  RG+LMA++R GI
Sbjct: 1329 NKIPEVVTVLGIEAARRKLLSELREAYLAYGLNINYRHYTILVDTMCQRGYLMAVSRTGI 1388

Query: 1365 NRNDT-GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE 1423
            NR++T GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG  A IGTG   L L+  
Sbjct: 1389 NRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSANLVLGNQARIGTGLFDLMLDMS 1448

Query: 1424 MLKNAIEL 1431
             L++ + L
Sbjct: 1449 KLQHVVPL 1456


>gi|83320442|gb|ABC02848.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
          Length = 983

 Score = 1088 bits (2815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/993 (54%), Positives = 700/993 (70%), Gaps = 42/993 (4%)

Query: 101  IMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEID------ 154
            I+  VC+ CSK+  DE +  ++ A K++N   RLK + D CK++  CE   E D      
Sbjct: 1    ILECVCWYCSKLKIDETEVAYQMAQKVKNSNRRLKLVWDVCKSRMVCEASVEADEREINI 60

Query: 155  -----------VPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLP 203
                       V G  G +      GGCG +QP    +G+K+ A +K             
Sbjct: 61   SRADEDLRREEVEGMLGTKRKALGHGGCGHKQPTFRKDGLKLTATFKGVALSGG------ 114

Query: 204  EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS---- 259
            E  E KQ LT  +VL VLK+ISD D + +G+NP+YARP+W+I+ V+P+PP  VRPS    
Sbjct: 115  EDTEGKQVLTVLQVLQVLKKISDTDVRAIGMNPEYARPEWLIISVMPVPPMCVRPSIQMD 174

Query: 260  ------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
                  DDLT++L  I++ N  +R  E  GAP HII EF  LLQFH+AT+ +N++ G P+
Sbjct: 175  ATRHSEDDLTYKLNDILKANARVRSCEVEGAPQHIIDEFETLLQFHVATFINNDISGIPQ 234

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP + IDQ+GVP +IA N
Sbjct: 235  ALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLEIDQVGVPKAIAKN 294

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPE VTPYNI+RL+ELV+ GP   PG   AKY+IRD G+R+DL+Y K+  D  L++GY
Sbjct: 295  LTYPEVVTPYNIDRLQELVQNGPTEHPG---AKYVIRDSGERIDLKYSKRGGDIPLQIGY 351

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVER L D D V+FNRQPSLHKMS+MGHR+K+M YSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 352  KVERSLMDNDVVIFNRQPSLHKMSMMGHRVKVMDYSTFRLNLSVTSPYNADFDGDEMNLH 411

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            +PQS ETRAEV EL MVPK IVSPQ NRP+MGIVQDTL      TKRD  +++D+ M++L
Sbjct: 412  LPQSEETRAEVRELCMVPKQIVSPQGNRPIMGIVQDTLCAMIMFTKRDNLMKQDLVMDLL 471

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLV 613
            +    +DG +P P ILKP+PLW+GKQ+++L+IP  IN +     H D +    + GDT V
Sbjct: 472  LKVPGWDGMIPPPCILKPQPLWSGKQLYSLLIPDGINCYTFLKEHPDLETSWSSPGDTRV 531

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
             +E G LLSG +CK+T+G   G L+H I+ E+GP+A + FLG TQ ++N WL+ N FSIG
Sbjct: 532  VVENGVLLSGIVCKQTVGAVRGGLVHTIFNELGPEATKVFLGGTQRVINQWLVTNGFSIG 591

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGDTI DA TM++++  IS+A   V  +IK   +  ++  PG T  E+FEN +N  LN A
Sbjct: 592  IGDTITDASTMDSVSKIISEAHRIVDQIIKDCIEDKMKGLPGMTYKETFENNINFELNKA 651

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            R+ AG S Q  L + NN++ MV +GSKGS+IN+SQMTA VGQQNVEGKRIPFGF DRTLP
Sbjct: 652  RENAGKSVQAQLKDCNNVRKMVVSGSKGSYINVSQMTAAVGQQNVEGKRIPFGFRDRTLP 711

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HFTKDDY P SRGFVENSYL GLTPQEF+FHAMGGREGLIDTAVKT+ETGYIQRRLVKA+
Sbjct: 712  HFTKDDYTPHSRGFVENSYLSGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKAL 771

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEE 912
            ED+MV YDGTVRNSLG +I+F YG DG D+  +E+Q + S++   + F+K ++ + MD  
Sbjct: 772  EDVMVHYDGTVRNSLGAIIEFAYGHDGADASLLENQKVASVRCSDARFEKMYKVDVMDPA 831

Query: 913  NWNPNYMLQEYIDDLKTIKE---LRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNL 969
                +  L   I  LKTI+    ++ V DAE Q L  DR  + T I+ +G+ ++PLPVNL
Sbjct: 832  KSFRSDSLDFSI--LKTIEANDGVQQVLDAEYQTLLTDRKLMQTFISPNGEDTFPLPVNL 889

Query: 970  KRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNI 1029
             R+I NA++ FK+D R+PS++HP+ +V ++++L +RL VV G DPLS+EAQ NA +   I
Sbjct: 890  ARMITNARQLFKIDSRKPSNLHPVTIVNSINQLIDRLVVVRGSDPLSIEAQNNAVMLLKI 949

Query: 1030 LLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
             LRST +SKRV++E  L   AF+WV+GEIE+RF
Sbjct: 950  HLRSTLSSKRVIEEFHLDSNAFDWVVGEIETRF 982


>gi|146095454|ref|XP_001467585.1| RNA polymerase ii largest subunit [Leishmania infantum JPCM5]
 gi|134071950|emb|CAM70645.1| RNA polymerase ii largest subunit [Leishmania infantum JPCM5]
          Length = 1662

 Score = 1088 bits (2815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/1507 (41%), Positives = 876/1507 (58%), Gaps = 137/1507 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
             P S   + KV  VQF +    +I+  +   IEH ++ E G+P  GG++D R+GT D + 
Sbjct: 7    LPPSQMPLQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYEHGQPVRGGINDLRMGTTDFEY 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
             CETC     ECPGHFG++ELA+P+F+I     VL  ++ VC  C  +L D +D    + 
Sbjct: 67   SCETCGLKHPECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTNDPSEMKK 126

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            +      NRL+ +   C +  K       D+ G +G+            +QP++     +
Sbjct: 127  IAHLQGLNRLRMVAKLCGSVCK----RSKDIQGCEGK-----------GRQPRIG----R 167

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
                Y   + K   +EQ            AE    VL R+SD D  ++G +P++  P  +
Sbjct: 168  FAGIYPGLQIKVTQEEQ-------DYVWHAENARQVLDRVSDSDALIMGFDPRFCHPRDL 220

Query: 245  ILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
            IL VLPIPPP VRP+         D+LTHQ+  I++ N  LR+ + +G  A +    A L
Sbjct: 221  ILTVLPIPPPQVRPAVAFGSAKSDDELTHQIMSIVKRNIQLRKDKESGVKAAVDRSRA-L 279

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQ H+AT+F+N       A     + +KS+  RLK K GR+RGNLMGKRVDFSARTVIT 
Sbjct: 280  LQEHVATFFNNASTYYKPAKVGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITG 339

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP I++D++GVP+S+A+ LT+PE V   N +RL E V+   +P      A YIIR +G  
Sbjct: 340  DPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRTTYP-----SANYIIRPNGNV 394

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
              L  +K  +  HL++G  VERH+ DGD VLFNRQP+LH+MS+MGHR++++ Y+TFRLNL
Sbjct: 395  TKLALVKDRNAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNL 454

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            S T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGIVQD+LLG  
Sbjct: 455  SCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSY 514

Query: 536  KITKRDTFIEKDVFMNILMW---WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
            ++T +DTF++K    ++ +W   WE     +P P ILKPRPLWTGKQ+F+LI+P ++N  
Sbjct: 515  RLTDKDTFVDKYFIQSVALWLDLWE-----LPIPAILKPRPLWTGKQIFSLILP-EVN-- 566

Query: 593  RTAAWHADN--DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
                 H  +  DK      D  + I++G+LL G + K  +G + GSLIHVI+ E G D  
Sbjct: 567  -----HPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEV 621

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
             KF+   Q +  Y+    AFS+G+ DT+ADA T++ +N+ + K + +V+ +   A +  L
Sbjct: 622  AKFINGVQRITTYFNYCFAFSVGVQDTVADATTLKEMNNVLHKTRQSVEKIGAAANNGKL 681

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
              + G ++++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKGS +NI Q+ 
Sbjct: 682  TRKAGMSLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIA 741

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
              VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EF+FH M GRE
Sbjct: 742  VFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMATRGYVEGLQPHEFYFHTMAGRE 801

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE-SQ 889
            GLIDTAVKTS+TGY+QR+LVKA+ED+   YDGTVRN+  ++IQ  YGEDG+D   IE +Q
Sbjct: 802  GLIDTAVKTSDTGYLQRKLVKALEDVHASYDGTVRNANQELIQLAYGEDGLDGARIEGNQ 861

Query: 890  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRD-----VFDAEVQKL 944
                  M  SE    +R+E ++E      M   Y+D       LRD         E ++L
Sbjct: 862  AFPIPHMTNSEMADKYRYEYNDEGSFSENMGGHYMDPFVRDSLLRDPQSVLKLQEEFEQL 921

Query: 945  EADRY--QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
              DR   +L  ++         LPVN+ RLI NA+ T      + S+++P+ V+  V +L
Sbjct: 922  MKDRAMSRLVIDMEDKNKLKMNLPVNVARLIQNARTTMG-KRSQVSNLNPITVINRVREL 980

Query: 1003 QERL-KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1052
            QE L ++ P           + LS +  + A   F I LR    SKRVLKE++L  +AFE
Sbjct: 981  QEDLAQLFPSYHKDYNGRFANVLSQQRVERALTLFGIHLRQILGSKRVLKEYKLNDKAFE 1040

Query: 1053 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1112
            +++ EI +++ QSL+ PGE+IG +AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E
Sbjct: 1041 YLLKEIRTKYQQSLITPGEIIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLE 1100

Query: 1113 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1172
            ++NV+K  +  S++V L       + +A+  Q  +EY TL ++T   ++ YDPDP  T++
Sbjct: 1101 LLNVSKNQRNASVAVCLIREYQK-RNKAQEAQQFIEYCTLANITTTVQIIYDPDPRNTVV 1159

Query: 1173 EEDVEFVK-SYYEMPDEDIAPEKI---SPWLLRIELNREMMVDKKLSMAAVAEKINQEFD 1228
             ED E ++     M +ED  P+     SP++ R+ L+ ++  DK+L+M  V   I Q  D
Sbjct: 1160 AEDEEMIRWEQAVMNEEDEEPDAEQPPSPFIARLILDNDLFNDKRLNMKDVKSAIRQ-VD 1218

Query: 1229 DDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-- 1286
            D      N +N  + I+R+R      P+     +S      L K  + +L  + LRG+  
Sbjct: 1219 DTYMVQANMENDGQRIVRLR------PRKCTGADSVPA---LTKAVAQLLQSVHLRGIPG 1269

Query: 1287 --------------------------------------NLLAVMCHED---VDARRTTSN 1305
                                                    + V+ +E    +D  +T+SN
Sbjct: 1270 IKKTLLKEGNTFRVDPETGGIKNESSWMVDTEGTALQRIFVGVVNNEGKNIIDFSKTSSN 1329

Query: 1306 HLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1365
             + E++ VLGIEA RR LL ELR      G  +NYRH  IL DTM  RG+LMA++R GIN
Sbjct: 1330 KIPEVVTVLGIEAARRKLLSELREAYLAYGLNINYRHYTILVDTMCQRGYLMAVSRTGIN 1389

Query: 1366 RNDT-GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEM 1424
            R++T GP+MRCSFEETV +L+ AA F E D +RGV+ +++LG  A IGTG   L L+   
Sbjct: 1390 RSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSASLVLGNQARIGTGLFDLLLDMSK 1449

Query: 1425 LKNAIEL 1431
            L++ + L
Sbjct: 1450 LQHVVPL 1456


>gi|110669629|gb|ABG81909.1| RNA polymerase II largest subunit [Roccella fuciformis]
          Length = 1017

 Score = 1088 bits (2815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/1039 (52%), Positives = 720/1039 (69%), Gaps = 46/1039 (4%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P+FH GF+  V  I+ SVC NC K+L DE +  FK A  I++PK R 
Sbjct: 1    ECPGHFGHIELAVPVFHAGFVTKVKKILESVCHNCGKLLDDERNPHFKAACNIKDPKRRF 60

Query: 135  KKILDACKNKTKCE------GGDEIDVPGQDGEEPLK-KNKGGCGAQQPKLTIEGMKMIA 187
              I   CK K  CE      G D+    G + +  LK K  GGCG  QP++  + +++  
Sbjct: 61   DAIHKLCKPKMVCEPDIQDDGNDDF---GGNPKAKLKVKGHGGCGNIQPEIRRDALRLTG 117

Query: 188  EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQ 247
             +K  + +  ++++ PE    K+ +T +  L V + I+D    LLG N  YARP+W+IL 
Sbjct: 118  TWKLPKGEEQEEDKGPE----KKIITPQMALNVFRNITDRGLTLLGSNADYARPEWLILT 173

Query: 248  VLPIPPPPVRPS-------------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            VLP+PPP VRPS             DDLT++L+ IIR N N++R E+ G+P H++ EF  
Sbjct: 174  VLPVPPPAVRPSISVDGTSQGMRSEDDLTYKLSDIIRANSNVKRCEQEGSPQHVVDEFVS 233

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQ+H+ATY DN++ G P+A Q+SGRP+K+I +RLK+KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 234  LLQYHVATYMDNDIAGLPKAQQKSGRPVKAIRARLKSKEGRLRGNLMGKRVDFSARTVIT 293

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP +++D++GVP SIA  LT+PETV  YNI ++ ELV  GP   PG   AKY+IRD+G+
Sbjct: 294  GDPNLSLDEVGVPRSIARTLTFPETVNSYNINKMHELVRNGPDIHPG---AKYVIRDNGE 350

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R+DLR+ K+  +  L++G+KVERH+ DGD+++FNRQPSLHK S MGHR+++MPYSTFRLN
Sbjct: 351  RIDLRHHKQPQNIQLQVGWKVERHIVDGDYIIFNRQPSLHKESRMGHRVRVMPYSTFRLN 410

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LSVTSPYNADFDGDEMN+HVPQS ETRAEV+ L MVP  IVSPQ N P+MGIVQDTL G 
Sbjct: 411  LSVTSPYNADFDGDEMNLHVPQSEETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLCGI 470

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
             KI +RD F+ ++  MN+L+W   +DG +PQP I+KP P WTGKQ+ ++ +   +NL R 
Sbjct: 471  YKICRRDVFLTQEQVMNVLLWVPSWDGVLPQPAIVKPSPRWTGKQIISMALVPGLNLVRK 530

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
                   ++G     D  + I+ GEL+ G   KK++G + G +IH I+ E GP+AA  F+
Sbjct: 531  G------EEGDCPVNDDGLLIDNGELIYGLFSKKSVGATGGGVIHTIFNERGPEAAVAFI 584

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
               Q +VNYWLL N FSIGIGDT+ D  T   IN  +++ K  V+ +   A    LE  P
Sbjct: 585  NGAQTIVNYWLLHNGFSIGIGDTVPDDNTTIGINQAVAEQKEAVRQITHSATGNELEALP 644

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G  + E+FE+KV++ LN+ARD AGS  +KSL + NN   M  AGSKGS INISQMTA VG
Sbjct: 645  GMNIRETFESKVSKALNSARDNAGSRTEKSLKDLNNAIQMARAGSKGSTINISQMTAVVG 704

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVEN YL+GLTP EFFFHAM GREGLID
Sbjct: 705  QQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENPYLQGLTPAEFFFHAMAGREGLID 764

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D+V IE Q LD +
Sbjct: 765  TAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDAVHIEQQRLDII 824

Query: 895  KMKKSEFDKAFRFEMDEENWNPNYMLQEYI---DDLKTIKELRDVFDAEVQKLEADRYQL 951
                ++FD+ F+ ++     N    LQ +I   +D+     ++ +FD E + L  DR  L
Sbjct: 825  ACSNAKFDEMFKVDV----MNSTAPLQGHIQISNDISGDSRVQALFDEEYEALRKDRAFL 880

Query: 952  ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG 1011
                  S +    LP+N+ R+I  AQ TF++    PSD+ P  V+  V +L   L VV G
Sbjct: 881  RE--TQSDNEMMHLPLNIHRMIKTAQTTFRIRGDTPSDLDPSYVIPQVKRLLGSLMVVRG 938

Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLK-EHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            +DPLS EAQ++AT+    L+RS  A KR+++ +++L   AF+ ++G+IE+RF ++ V+PG
Sbjct: 939  DDPLSQEAQESATMLVKALVRSRLAYKRIVRGDYKLNNLAFDNILGDIENRFTRAAVSPG 998

Query: 1071 EMIGCVAAQSIGEPATQMT 1089
            EM+G ++AQSIGEPATQMT
Sbjct: 999  EMVGVLSAQSIGEPATQMT 1017


>gi|398020383|ref|XP_003863355.1| RNA polymerase ii largest subunit [Leishmania donovani]
 gi|322501587|emb|CBZ36666.1| RNA polymerase ii largest subunit [Leishmania donovani]
          Length = 1662

 Score = 1088 bits (2813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 618/1507 (41%), Positives = 876/1507 (58%), Gaps = 137/1507 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
             P S   + KV  VQF +    +I+  +   IEH ++ E G+P  GG++D R+GT D + 
Sbjct: 7    LPPSQMPLQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYEHGQPVRGGINDLRMGTTDFEY 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
             CETC     ECPGHFG++ELA+P+F+I     VL  ++ VC  C  +L D +D    + 
Sbjct: 67   SCETCGLKHPECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTNDPSEMKK 126

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            +      NRL+ +   C +  K       D+ G +G+            +QP++     +
Sbjct: 127  IAHLQGLNRLRMVAKLCGSVCK----RSKDIQGCEGK-----------GRQPRIG----R 167

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
                Y   + K   +EQ            AE    VL R+SD D  ++G +P++  P  +
Sbjct: 168  FAGIYPGLQIKVTQEEQ-------DYVWHAENARQVLDRVSDSDALIMGFDPRFCHPRDL 220

Query: 245  ILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
            IL VLPIPPP VRP+         D+LTHQ+  I++ N  LR+ + +G  A +    A L
Sbjct: 221  ILTVLPIPPPQVRPAVAFGPAKSDDELTHQIMSIVKRNIQLRKDKESGVKAAVDRSRA-L 279

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQ H+AT+F+N       A     + +KS+  RLK K GR+RGNLMGKRVDFSARTVIT 
Sbjct: 280  LQEHVATFFNNASTYYKPAKVGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITG 339

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP I++D++GVP+S+A+ LT+PE V   N +RL E V+   +P      A YIIR +G  
Sbjct: 340  DPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRTTYP-----SANYIIRPNGNV 394

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
              L  +K  +  HL++G  VERH+ DGD VLFNRQP+LH+MS+MGHR++++ Y+TFRLNL
Sbjct: 395  TKLALVKDRNAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNL 454

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            S T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGIVQD+LLG  
Sbjct: 455  SCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSY 514

Query: 536  KITKRDTFIEKDVFMNILMW---WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
            ++T +DTF++K    ++ +W   WE     +P P ILKPRPLWTGKQ+F+LI+P ++N  
Sbjct: 515  RLTDKDTFVDKYFIQSVALWLDLWE-----LPIPAILKPRPLWTGKQIFSLILP-EVN-- 566

Query: 593  RTAAWHADN--DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
                 H  +  DK      D  + I++G+LL G + K  +G + GSLIHVI+ E G D  
Sbjct: 567  -----HPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEV 621

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
             KF+   Q +  Y+    AFS+G+ DT+ADA T++ +N+ + K + +V+ +   A +  L
Sbjct: 622  AKFINGVQRITTYFNYCFAFSVGVQDTVADATTLKEMNNVLHKTRQSVEKIGAAANNGKL 681

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
              + G ++++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKGS +NI Q+ 
Sbjct: 682  TRKAGMSLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIA 741

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
              VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EF+FH M GRE
Sbjct: 742  VFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMATRGYVEGLQPHEFYFHTMAGRE 801

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE-SQ 889
            GLIDTAVKTS+TGY+QR+LVKA+ED+   YDGTVRN+  ++IQ  YGEDG+D   IE +Q
Sbjct: 802  GLIDTAVKTSDTGYLQRKLVKALEDVHASYDGTVRNANQELIQLAYGEDGLDGARIEGNQ 861

Query: 890  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRD-----VFDAEVQKL 944
                  M  SE    +R+E ++E      M   Y+D       LRD         E ++L
Sbjct: 862  AFPIPHMTNSEMADKYRYEYNDEGSFSENMGGHYMDPFVRDSLLRDPQSVLKLQEEFEQL 921

Query: 945  EADRY--QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
              DR   +L  ++         LPVN+ RLI NA+ T      + S+++P+ V+  V +L
Sbjct: 922  MKDRAMSRLVIDMEDKNKLKMNLPVNVARLIQNARTTMG-KRSQVSNLNPITVINRVREL 980

Query: 1003 QERL-KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1052
            QE L ++ P           + LS +  + A   F I LR    SKRVLKE++L  +AFE
Sbjct: 981  QEDLVQLFPSYHKDYNGRFANVLSQQRVERALTLFGIHLRQILGSKRVLKEYKLNDKAFE 1040

Query: 1053 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1112
            +++ EI +++ QSL+ PGE+IG +AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E
Sbjct: 1041 YLLKEIRTKYQQSLITPGEIIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLE 1100

Query: 1113 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1172
            ++NV+K  +  S++V L       + +A+  Q  +EY TL ++T   ++ YDPDP  T++
Sbjct: 1101 LLNVSKNQRNASVAVCLIREYQK-RNKAQEAQQFIEYCTLANITTTVQIIYDPDPRNTVV 1159

Query: 1173 EEDVEFVK-SYYEMPDEDIAPEKI---SPWLLRIELNREMMVDKKLSMAAVAEKINQEFD 1228
             ED E ++     M +ED  P+     SP++ R+ L+ ++  DK+L+M  V   I Q  D
Sbjct: 1160 AEDEEMIRWEQAVMNEEDEEPDAEQPPSPFIARLILDNDLFNDKRLNMKDVKSAIRQ-VD 1218

Query: 1229 DDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-- 1286
            D      N +N  + I+R+R      P+     +S      L K  + +L  + LRG+  
Sbjct: 1219 DTYMVQANMENDGQRIVRLR------PRKCTGADSVPA---LTKAVAQLLQSVHLRGIPG 1269

Query: 1287 --------------------------------------NLLAVMCHED---VDARRTTSN 1305
                                                    + V+ +E    +D  +T+SN
Sbjct: 1270 IKKTLLKEGNTFRVDPETGGIKNESSWMVDTEGTALQRIFVGVVNNEGKNIIDFSKTSSN 1329

Query: 1306 HLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1365
             + E++ VLGIEA RR LL ELR      G  +NYRH  IL DTM  RG+LMA++R GIN
Sbjct: 1330 KIPEVVTVLGIEAARRKLLSELREAYLAYGLNINYRHYTILVDTMCQRGYLMAVSRTGIN 1389

Query: 1366 RNDT-GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEM 1424
            R++T GP+MRCSFEETV +L+ AA F E D +RGV+ +++LG  A IGTG   L L+   
Sbjct: 1390 RSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSASLVLGNQARIGTGLFDLLLDMSK 1449

Query: 1425 LKNAIEL 1431
            L++ + L
Sbjct: 1450 LQHVVPL 1456


>gi|110669620|gb|ABG81905.1| RNA polymerase II largest subunit [Physcia aipolia]
          Length = 1015

 Score = 1087 bits (2811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 559/1038 (53%), Positives = 725/1038 (69%), Gaps = 46/1038 (4%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P+FH+GF+  +  ++ +VC NC KI  DE    FK AL+IR+PK R 
Sbjct: 1    ECPGHFGHIELATPVFHVGFITKIKKLLETVCHNCGKIKVDESSVAFKDALRIRDPKRRF 60

Query: 135  KKILDACKNKTKCEGGDEIDVPGQDGEEPLKK---NKGGCGAQQPKLTIEGMKMIAEYKA 191
              I   CK K  CE     D   +D ++P+K+     GGCG  QP++  +G+K++  +K 
Sbjct: 61   DGIWRLCKPKLICEMSATQD---EDNKDPVKEPLPGHGGCGNIQPEVRRDGLKLMGTWKP 117

Query: 192  QRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPI 251
            Q+  ++ + Q  E    K+ +T +  L V + IS  D + LGL+  YARP+WMI+ VLP+
Sbjct: 118  QKGDDEGEVQQAE----KKPITPKMALAVFQEISAGDIRKLGLSNDYARPEWMIITVLPV 173

Query: 252  PPPPVRPS------------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFH 299
            PPPPVRPS            DDLT++L  IIR N N+RR E  G PAHII EF  LLQFH
Sbjct: 174  PPPPVRPSIKVDGGDGPTGEDDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETLLQFH 233

Query: 300  IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTI 359
            +ATY  N+  GQP+A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT DP +
Sbjct: 234  VATYMSNDTAGQPQALQKSGRPVKAIRARLKGKEGRVRGNLMGKRVDFSARTVITGDPNL 293

Query: 360  NIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLR 419
            ++D++GVP SIA  LTYPETVTPYNI +L +LV+ GP+  PG   A+Y+IRD G+R+DLR
Sbjct: 294  SLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPG---ARYVIRDSGERIDLR 350

Query: 420  YLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTS 479
            + +++ D  L+ G++VERH+ DGDF++FNRQPSLHK S+MGHR+++MPYSTFRLNLSVTS
Sbjct: 351  FHRRAGDLVLQYGWQVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTS 410

Query: 480  PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 539
            PYNADFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  K+ +
Sbjct: 411  PYNADFDGDEMNLHVPQSEETRAEISQLCMVPLNIVSPQRNWPIMGIVQDTLCGIYKMCR 470

Query: 540  RDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT--AAW 597
            RD F+ ++  MNIL+W  D+DG +PQP ILKPRP W+GKQ+ +L++P  +N  +   A +
Sbjct: 471  RDVFLSEEQVMNILLWVPDWDGVIPQPAILKPRPRWSGKQIISLVLPFTLNYLQADKAGF 530

Query: 598  HADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHT 657
                D+G+   G        GEL+ G   K+ +G S   +IH+I+ E GP+AA  F    
Sbjct: 531  SPLKDEGVFVDG--------GELMYGLFRKQAVGASKQGIIHIIFNEKGPEAALNFFNGA 582

Query: 658  QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
            Q +VNYWLL N FSIGIGDTI D KT++ I + +S+ K  V  + ++A    LE  PG +
Sbjct: 583  QTVVNYWLLHNGFSIGIGDTIPDRKTIQGIENAVSEQKTEVTEITRKATADELESLPGMS 642

Query: 718  MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
            + E+FE+KV   LN AR+ AG+  Q+SL + NN   M  +GSKGS INISQMTA VGQQ 
Sbjct: 643  IRETFESKVQAALNQARENAGTKTQESLKDLNNAVQMALSGSKGSTINISQMTAIVGQQA 702

Query: 778  VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
            VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGL+DTAV
Sbjct: 703  VEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLVDTAV 762

Query: 838  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
            KT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGDV+QFLYGEDG+D+V IESQ +D +   
Sbjct: 763  KTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDVVQFLYGEDGLDAVHIESQPVDIVTCS 822

Query: 898  KSEFDKAFRFEMDE---ENWNPNYMLQ---EYIDDLKTIKELRDVFDAEVQKLEADRYQL 951
              +F++  R ++ +   E   P+  L+   E   DL     L    D E ++L+  R   
Sbjct: 823  HDQFERKCRLDLMDSRPETSIPSEFLECSKEIAGDLNVQSHL----DEEYERLQKAR-DF 877

Query: 952  ATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG 1011
              E  T   S++ LP+N+ R++ NA+  FK+     S++HP EV+  V+ L +RL +V G
Sbjct: 878  LREKKTDDGSNYYLPLNIIRILENAKAAFKIRNNSRSNLHPAEVIPQVNDLLDRLVIVRG 937

Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
            ED LS EAQ NAT+ F   LRS    KR++ E+ L + AF+ V+GEIES+F ++ V PGE
Sbjct: 938  EDSLSQEAQHNATILFKAQLRSRLVFKRLVLENSLNKLAFQHVLGEIESKFCRAAVNPGE 997

Query: 1072 MIGCVAAQSIGEPATQMT 1089
            M+G +AAQSIGEPATQMT
Sbjct: 998  MVGVLAAQSIGEPATQMT 1015


>gi|329132889|gb|AEB78335.1| Rpb1, partial [Jakoba libera]
          Length = 1040

 Score = 1085 bits (2807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 553/1068 (51%), Positives = 728/1068 (68%), Gaps = 63/1068 (5%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELAKPM+H+G+M  V  ++  VC  CS  L +    +  +  K  N K R+
Sbjct: 1    ECPGHFGHIELAKPMYHVGYMNVVRKVLDCVCMKCSSPLFNPVSKRLGELAKYCNSKVRM 60

Query: 135  KKILDACKNKTKCEGGDEIDVPGQDGEEPLKKN-KGGCGAQQPKLTIEGMKMIAEYKAQR 193
                  C +++    G      G +G+     +   GCG  +PK+T +   ++ E K+  
Sbjct: 61   ------CGDRSLAAAGAAGGAEGAEGQGQGAMDIDHGCGFTKPKITRKEYFLMKEEKSPG 114

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
            +++  Q+        ++ LTAE    VLK +++E C++LG NP +ARPDW+++ VLP+PP
Sbjct: 115  QESGSQKV------SQRILTAEEAHQVLKALTNEACEMLGFNPNFARPDWLLVTVLPVPP 168

Query: 254  PPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT 302
            P VRPS           DDLT +L  I+  N+ LRRQE +G     +    ++LQFH+ T
Sbjct: 169  PAVRPSIDMGGSGRAAQDDLTFKLGDILSTNQLLRRQEEHGVNPQTLRNTEEMLQFHLFT 228

Query: 303  YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
            + DNEL G      +SG+ +KSI  RLK K GRIR NLMGKRVDFSAR+VIT DP + ID
Sbjct: 229  FVDNELAG------KSGKVLKSISQRLKGKSGRIRNNLMGKRVDFSARSVITADPILEID 282

Query: 363  QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK 422
            Q+GVP  IA  +T PE VTP+NI+RL+ELV +GP   PG   A+++  +DG R DL +  
Sbjct: 283  QVGVPVDIAKIMTVPEVVTPFNIKRLQELVNHGPSVHPG---ARFVFMEDGTRQDLEF-- 337

Query: 423  KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 482
             S +  L  GY VERHL D D VLFNRQP+LH+M +MGHR+K M + TFRLNLSVTSPYN
Sbjct: 338  -SPNFPLAYGYTVERHLEDNDVVLFNRQPTLHRMGMMGHRVKTMKFKTFRLNLSVTSPYN 396

Query: 483  ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 542
            ADFDGDEMN+H PQS  T+AE+LELMM+PK ++SP+SN PVMG+VQD+LL CR+IT RD 
Sbjct: 397  ADFDGDEMNLHAPQSLLTKAELLELMMIPKNMISPKSNSPVMGLVQDSLLACRRITLRDV 456

Query: 543  FIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADND 602
            F+E+D FMN LMW +DFDG++P P ILKP+PLWTGKQ+F+ I+PK +NL   +  H  ++
Sbjct: 457  FLERDHFMNCLMWVDDFDGQLPMPAILKPKPLWTGKQLFSQILPK-VNLRLRSKDHPRSE 515

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
              +++ GDT V IE+GELL+G  CK T+GTS GSL+HV++ E GP+   + +G  Q LVN
Sbjct: 516  NTLVSPGDTQVIIEQGELLAGKCCKNTMGTSQGSLVHVVYTEQGPEVCARMMGQVQRLVN 575

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL   FSIGIGD + D  TM TI + I+  K  V  +IK+   + LE +PG T++ESF
Sbjct: 576  YWLLTVGFSIGIGDCVPDEITMRTITEAITDDKKQVTGVIKELHKRKLEKKPGLTLLESF 635

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E  VN  LN ARD+AG++A +SLSE NN K MVTAGSKG+ +NISQ+ ACVGQQNVEG+R
Sbjct: 636  EAVVNDKLNQARDKAGNAALESLSERNNFKNMVTAGSKGNELNISQVIACVGQQNVEGRR 695

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF +RTLPHF +++YGPES+GFV NSYL GLTPQEFFFH+MGGREG+IDTAVKTSET
Sbjct: 696  IPFGFRNRTLPHFRQENYGPESKGFVSNSYLSGLTPQEFFFHSMGGREGIIDTAVKTSET 755

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKAMEDIMV+YDGTVR++ G V+QF+YGEDG+DS+ +ESQ  + + M ++ F 
Sbjct: 756  GYIQRRLVKAMEDIMVRYDGTVRDARGKVLQFVYGEDGLDSIRVESQNFELVSMSQNAFR 815

Query: 903  KAFRF------EMDEENWNPNYMLQ-EYIDDLKTIKELR------DVFDAEVQKLEADRY 949
            + F +       +     +   +L    +   + I+ LR      D    EV++L  DR 
Sbjct: 816  QLFEYPPHNHPLLSSSQSSFTVLLACIMVSRAQVIESLRNDPTKVDELVDEVEQLREDRR 875

Query: 950  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMH---------PMEVVEAVD 1000
             LA  I TSG+   P+PVN+ RLI NAQKTF +D    SD+H         P +V+ AV 
Sbjct: 876  ALA-RIFTSGEGRSPMPVNVDRLIVNAQKTFTIDMYSKSDLHPNDVPPVPSPWQVLRAVK 934

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
            KL   + V    D    E  +NAT  F I LR+  ASKRV++++ L +++FEW+I EI +
Sbjct: 935  KLCSDVMVTNIPDS---EGSRNATYLFEIYLRTKLASKRVIQKYHLDKQSFEWLISEIRT 991

Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVP 1108
            RF Q+L+ PGE +G +AAQS+GEPATQMTLNTFH+AGVSAKNVT GVP
Sbjct: 992  RFFQALITPGECVGVIAAQSVGEPATQMTLNTFHFAGVSAKNVTXGVP 1039


>gi|157873478|ref|XP_001685248.1| RNA polymerase ii largest subunit [Leishmania major strain Friedlin]
 gi|68128319|emb|CAJ08467.1| RNA polymerase ii largest subunit [Leishmania major strain Friedlin]
          Length = 1662

 Score = 1084 bits (2803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 617/1507 (40%), Positives = 874/1507 (57%), Gaps = 137/1507 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
             P S   + KV  VQF +    +I+  +   IEH ++ E G+P  GG++D R+GT D + 
Sbjct: 7    LPPSQMPLQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYEHGQPVRGGINDLRMGTTDFEY 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
             CETC     ECPGHFG++ELA+P+F+I     VL  ++ VC  C  +L D +D    + 
Sbjct: 67   SCETCGLRHPECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTNDPSEMKK 126

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            +      NRL+ +   C +  K       D+ G +G+            +QP++     +
Sbjct: 127  IAHLQGLNRLRMVAKLCGSVCK----RSKDIQGCEGK-----------GRQPRIG----R 167

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
             +  Y   + K   +EQ            AE    VL R+SD D  ++G + ++  P  +
Sbjct: 168  FVGIYPGLQIKVTQEEQ-------DYVWHAENARQVLDRVSDSDALIMGFDRRFCHPRDL 220

Query: 245  ILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
            IL VLPIPPP VRP+         D+LTHQ+  I++ N  LR+ + +G  A +    A L
Sbjct: 221  ILTVLPIPPPQVRPAVTFGSAKSDDELTHQIMSIVKRNIQLRKDKESGVKAAVDRSRA-L 279

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQ H+AT+F+N       A     + +KS+  RLK K GR+RGNLMGKRVDFSARTVIT 
Sbjct: 280  LQEHVATFFNNASTYYKPAKVGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITG 339

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP I++D++GVP+S+A+ LT+PE V   N +RL E V+   +P      A YIIR +G  
Sbjct: 340  DPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRTTYP-----SANYIIRPNGNV 394

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
              L  +K  S  HL++G  VERH+ DGD VLFNRQP+LH+MS+MGHR++++ Y+TFRLNL
Sbjct: 395  TKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNL 454

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            S T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGIVQD+LLG  
Sbjct: 455  SCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSY 514

Query: 536  KITKRDTFIEKDVFMNILMW---WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
            ++T +DTF++K    ++ +W   WE     +P P ILKPRPLWTGKQ+F+LI+P ++N  
Sbjct: 515  RLTDKDTFVDKYFIQSVALWLDLWE-----LPIPAILKPRPLWTGKQIFSLILP-EVN-- 566

Query: 593  RTAAWHADN--DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
                 H  +  DK      D  + I++G+LL G + K  +G + GSLIHVI+ E G D  
Sbjct: 567  -----HPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEV 621

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
             KF+   Q +  Y+    AFS+G+ DT+ADA T++ +N+ + K + +V+ +   A +  L
Sbjct: 622  AKFINGVQRITTYFNYCFAFSVGVQDTVADATTLKEMNNVLHKTRQSVEKIGAAANNGKL 681

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
              + G ++++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKGS +NI Q+ 
Sbjct: 682  TRKAGMSLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIA 741

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
              VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EF+FH M GRE
Sbjct: 742  VFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMATRGYVEGLQPHEFYFHTMAGRE 801

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE-SQ 889
            GLIDTAVKTS+TGY+QR+LVKA+ED+   YDGTVRN+  ++IQ  YGEDG+D   IE +Q
Sbjct: 802  GLIDTAVKTSDTGYLQRKLVKALEDVHASYDGTVRNANQELIQLAYGEDGLDGARIEGNQ 861

Query: 890  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRD-----VFDAEVQKL 944
                  M  SE    +R+E ++E      M   Y+D       LRD         E ++L
Sbjct: 862  AFPIPHMTNSEMADKYRYEYNDEGSFSENMGGHYMDPFVRDSLLRDPQSVLKLQEEFEQL 921

Query: 945  EADRY--QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
              DR   +L  ++         LPVN+ RLI NA+ T      + S+++P+ V+  V +L
Sbjct: 922  MRDRAMSRLVIDMEDKNKLKMNLPVNVARLIQNARTTMG-KRSQVSNLNPITVINRVREL 980

Query: 1003 QERL-KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1052
            QE L ++ P           + LS +  + A   F I LR    SKRVLKE++L  +AFE
Sbjct: 981  QEDLVQLFPSYHKDYNGRFVNVLSQQRVERALTLFGIHLRQILGSKRVLKEYKLNDKAFE 1040

Query: 1053 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1112
            +++ EI +++ QSL+ PGE+IG +AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E
Sbjct: 1041 YLLKEIRTKYQQSLITPGEIIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLE 1100

Query: 1113 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1172
            ++NV++  +  S++V L       + +A+  Q  +EY TL ++T   ++ YDPDP  T++
Sbjct: 1101 LLNVSRNQRNASVAVCLIREYQK-RNKAQEAQQFIEYCTLANITTTVQIIYDPDPRNTVV 1159

Query: 1173 EEDVEFVK-SYYEMPDEDIAPEKI---SPWLLRIELNREMMVDKKLSMAAVAEKINQEFD 1228
             ED E ++     M  ED  P+     SP++ R+ L+ ++  DK+L+M  V   I Q  D
Sbjct: 1160 AEDEEMIRWEQAVMNAEDEEPDAEQPPSPFIARLILDNDLFNDKRLNMKDVKSAIRQ-VD 1218

Query: 1229 DDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV-- 1286
            D      N +N  + I+R+R      P+     +S      L K  + +L  + LRG+  
Sbjct: 1219 DTYMVQANMENDGQRIVRLR------PRKCTGADSVPA---LTKAVAQLLQSVHLRGIPG 1269

Query: 1287 --------------------------------------NLLAVMCHED---VDARRTTSN 1305
                                                    + V+  E    +D  +T+SN
Sbjct: 1270 IKKTLLKEGNTFRVDPEAGGIKNESSWMVDTEGTALQRIFVGVVNSEGKNIIDFSKTSSN 1329

Query: 1306 HLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1365
             + E++ VLGIEA RR LL ELR      G  +NYRH  IL DTM  RG+LMA++R GIN
Sbjct: 1330 KIPEVVTVLGIEAARRKLLSELREAYLAYGLNINYRHYTILVDTMCQRGYLMAVSRTGIN 1389

Query: 1366 RNDT-GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEM 1424
            R++T GP+MRCSFEETV +L+ AA F E D +RGV+ +++LG  A IGTG   L L+   
Sbjct: 1390 RSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSASLVLGNQARIGTGLFDLLLDMSK 1449

Query: 1425 LKNAIEL 1431
            L++ + L
Sbjct: 1450 LQHVVPL 1456


>gi|133332|sp|P17546.1|RPB1A_TRYBB RecName: Full=DNA-directed RNA polymerase II subunit RPB1-A;
            Short=RNA polymerase II subunit B1-A; AltName:
            Full=DNA-directed RNA polymerase II largest subunit A
 gi|10505|emb|CAA31846.1| unnamed protein product [Trypanosoma brucei]
          Length = 1766

 Score = 1082 bits (2799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 665/1747 (38%), Positives = 964/1747 (55%), Gaps = 147/1747 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGT-IDRK 63
             P S  E+ KV  VQF I    +I+  +V  +EH ++      + G  S   +   +   
Sbjct: 7    LPVSQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYANAADQSGEASMICVWVPLTSN 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
              CETC     ECPGHFG++ELA+P+F+IG    VL +++ VC  C  +L +  +    +
Sbjct: 67   SACETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHK 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKG---------GCGAQ 174
             L+     NRL+++    + K +     E D+ G DG +    N G         GCGA 
Sbjct: 127  KLQHVTGLNRLRQVAKMAEAKCRVSTSTEDDM-GIDGFDSAPFNGGSGMGPGATRGCGAS 185

Query: 175  QPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGL 234
            QP+++    +    Y     K   +EQ  E         A++V  VL R+SD+D +L+G 
Sbjct: 186  QPRVS----RFYGIYPTLVIKAVHEEQDAE-------WHADKVRQVLDRVSDDDARLMGF 234

Query: 235  NPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAP 285
            +P+   P  ++L VLP+PPP VRP+         D+LTHQ+  I++ N  LRR + +   
Sbjct: 235  DPQRCHPRDLVLTVLPVPPPQVRPAISFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQ 294

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
            A I    A LLQ H+ATYF+N             + +KS+  RLK K GR+RGNLMGKRV
Sbjct: 295  AAIDRSRA-LLQEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRV 353

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT DP I++D++GVP+S+A+ LT+PE V   N +RL E      +P      A
Sbjct: 354  DFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFARRTVYP-----SA 408

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
             YI   +G    L  L+  S   L +G  VERH+ +GD VLFNRQP+LH+MS+MGHR+++
Sbjct: 409  NYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRV 468

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            + YSTFRLNLS T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MG
Sbjct: 469  LNYSTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMG 528

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQD+LLG  ++T +DTF++K    ++ +W + +  ++P P ILKPRPLWTGKQVF+LI+
Sbjct: 529  IVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLW--QLPIPAILKPRPLWTGKQVFSLIL 586

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            P ++N   T       D+      D++V I +G+LL G + K  +G + GSLIHVI+ E 
Sbjct: 587  P-EVNHPATP-----QDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEH 640

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G D   +F+   Q +  ++LL   FS+G+ DT+AD+ T+  +ND + K + NV+ +   A
Sbjct: 641  GSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAA 700

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +++L  + G T+++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKG+ +N
Sbjct: 701  NNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLN 760

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            I Q+   VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EFFFH 
Sbjct: 761  ICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHT 820

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKTS+TGY+QR+L+KA+ED+   YDGTVRN+  ++IQF+YGEDG+D   
Sbjct: 821  MAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGAR 880

Query: 886  IESQTLDSLKMK-KSEFDKAFRFEMDEENWNPNYMLQEYID---------DLKTIKELRD 935
            IE   L  L  +   E +  +++E D +      +   Y+D         D + +++L++
Sbjct: 881  IEGGQLFPLPFRDDKEMEDTYKYEYDVDGTFSGKVGGNYMDPHVRKMLRADPQNVRKLQE 940

Query: 936  VFDAEVQKLEADR--YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPM 993
                E ++L ADR   +   ++         LPVN  RLI NA+ T      + S++ P+
Sbjct: 941  ----EYEQLTADREWSRKMLDLEDRDKLKLNLPVNPGRLIQNARSTMG-KRSQVSNLSPI 995

Query: 994  EVVEAVDKLQERL-KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKE 1043
             +++ V KLQE L K+ P           + LS E  ++A   FN+ LR   ASKRVLKE
Sbjct: 996  TIIDHVRKLQEDLMKLFPSYHRGGDGYIRNTLSRERIESALTLFNVHLRQLLASKRVLKE 1055

Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
            ++L   AFE+++ EI +++ QSL  PGE IG +AAQS GEPATQMTLNTFH AG+S+KNV
Sbjct: 1056 YKLNDRAFEYLLKEIRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNV 1115

Query: 1104 TLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWY 1163
            TLGVPRL E++NV++  K  S++V L P  +  K  A+  Q  +EY TL S+T   +  Y
Sbjct: 1116 TLGVPRLLELLNVSRNQKHASMTVSLFPPYDE-KRNAQKAQHLIEYCTLESITRRIQFIY 1174

Query: 1164 DPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKI------SPWLLRIELNREMMVDKKLSMA 1217
            DPDP  T++E D + ++  + + DE  A  +I      SPW++R+EL+ +M+ DK L M 
Sbjct: 1175 DPDPRHTVVEADRDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDKALDMK 1234

Query: 1218 AVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEA----PKGELNDESAEDDVFLK-- 1271
             V + I +  +  +      +N  +  +R+R   +E     PK +    +    V L+  
Sbjct: 1235 DVKQAILRVDESYIIETGMANNVRQRTIRMRSRYNEGADSIPKLKREIPALLARVHLRGI 1294

Query: 1272 ---------------------KIESNMLTEMALRGVNL---LAVMCHED----VDARRTT 1303
                                 K+  N +  +   G  L      +  ED    ++A +T+
Sbjct: 1295 PGVRRALLKDTTEFTVDQATGKMSGNKIWAIDTDGTALRRAFIGVVGEDGKNIINAVKTS 1354

Query: 1304 SNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHG 1363
            SN + E+  +LGIEA R  +L ELR      G  +NYRH  IL DT+   G+LMA++R G
Sbjct: 1355 SNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVSRSG 1414

Query: 1364 INRNDT-GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLND 1422
            INR+DT GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG  A +GTG   L LN 
Sbjct: 1415 INRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDLVLNM 1474

Query: 1423 EMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPV---TDA 1479
              L+ A+  Q  +   G +  +           YH    S G     N++ S      D 
Sbjct: 1475 AALQQAVP-QAEAVAPGKDVNV-----------YH----SLGSTLQQNIQSSIAYRPRDH 1518

Query: 1480 QFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT 1539
              +P+V   +       G   SS   + S+P Y+P++  +       +        TSP 
Sbjct: 1519 DATPFVNNASLFLRQGFGGGSSSAPVTASAP-YNPSTTYHGGRLEASAVHRSQAYSTSPA 1577

Query: 1540 Y------SPSSPGYS--PTSPAYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1590
                   + +S  YS   ++ A++P S   S  +      +  S      S +PTS   S
Sbjct: 1578 LEYGGREASASQMYSVMSSASAFNPVSTRMSSVAHSYSEYSEASSYHLQHSVAPTSMQAS 1637

Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTS-PAYSPTSPAYSPTSPSYSPTSPSYSPTS---PSYS 1646
                  S T       S  Y+P +  + +P S  Y+ T    S +  S S ++   P+ S
Sbjct: 1638 LPRTDNSMTMQGIGSVSVPYTPHAMSSAAPPSQVYASTEVGRSHSEDSRSQSALYVPTLS 1697

Query: 1647 PTSPSYS 1653
            PT   Y+
Sbjct: 1698 PTHAGYA 1704


>gi|133329|sp|P17545.1|RPB1B_TRYBB RecName: Full=DNA-directed RNA polymerase II subunit RPB1-B;
            Short=RNA polymerase II subunit B1-B; AltName:
            Full=DNA-directed RNA polymerase II largest subunit B
 gi|10503|emb|CAA31847.1| unnamed protein product [Trypanosoma brucei]
          Length = 1766

 Score = 1082 bits (2798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 664/1747 (38%), Positives = 964/1747 (55%), Gaps = 147/1747 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGT-IDRK 63
             P S  E+ KV  VQF I    +I+  +V  +EH ++      + G  S   +   +   
Sbjct: 7    LPVSQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYANAADQSGEASMICVWVPLTSN 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
              CETC     ECPGHFG++ELA+P+F+IG    VL +++ VC  C  +L +  +    +
Sbjct: 67   SACETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHK 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKG---------GCGAQ 174
             L+     NRL+++    + K +     E D+ G DG +    N G         GCGA 
Sbjct: 127  KLQHMTGLNRLRQVAKMAEAKCRVSTSTEDDM-GIDGFDSAPFNGGSGMGPGATRGCGAS 185

Query: 175  QPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGL 234
            QP+++    +    Y     K   +EQ  E         A++V  VL R+SD+D +L+G 
Sbjct: 186  QPRVS----RFYGIYPTLVIKAVHEEQDAE-------WHADKVRQVLDRVSDDDARLMGF 234

Query: 235  NPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAP 285
            +P+   P  ++L VLP+PPP VRP+         D+LTHQ+  I++ N  LRR + +   
Sbjct: 235  DPQRCHPRDLVLTVLPVPPPQVRPAISFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQ 294

Query: 286  AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
            A I    A LLQ H+ATYF+N             + +KS+  RLK K GR+RGNLMGKRV
Sbjct: 295  AAIDRSRA-LLQEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRV 353

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFSARTVIT DP I++D++GVP+S+A+ LT+PE V   N +RL E      +P      A
Sbjct: 354  DFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTINKKRLTEFARRTVYP-----SA 408

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
             YI   +G    L  L+  S   L +G  VERH+ +GD VLFNRQP+LH+MS+MGHR+++
Sbjct: 409  NYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRV 468

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            + Y+TFRLNLS T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MG
Sbjct: 469  LNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMG 528

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQD+LLG  ++T +DTF++K    ++ +W + +  ++P P ILKPRPLWTGKQVF+LI+
Sbjct: 529  IVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLW--QLPIPAILKPRPLWTGKQVFSLIL 586

Query: 586  PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            P ++N   T       D+      D++V I +G+LL G + K  +G + GSLIHVI+ E 
Sbjct: 587  P-EVNHPATP-----QDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEH 640

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G D   +F+   Q +  ++LL   FS+G+ DT+AD+ T+  +ND + K + NV+ +   A
Sbjct: 641  GSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAA 700

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +++L  + G T+++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKG+ +N
Sbjct: 701  NNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLN 760

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            I Q+   VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EFFFH 
Sbjct: 761  ICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHT 820

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKTS+TGY+QR+L+KA+ED+   YDGTVRN+  ++IQF+YGEDG+D   
Sbjct: 821  MAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGAR 880

Query: 886  IESQTLDSLKMK-KSEFDKAFRFEMDEENWNPNYMLQEYID---------DLKTIKELRD 935
            IE   L  L  +   E +  +++E D +      +   Y+D         D + +++L++
Sbjct: 881  IEGGQLFPLPFRDDKEMEDTYKYEYDVDGTFSGKVGGNYMDPHVRKMLRADPQNVRKLQE 940

Query: 936  VFDAEVQKLEADR--YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPM 993
                E ++L ADR   +   ++         LPVN  RLI NA+ T      + S++ P+
Sbjct: 941  ----EYEQLTADREWSRKMLDLEDRDKLKLNLPVNPGRLIQNARSTMG-KRSQVSNLSPI 995

Query: 994  EVVEAVDKLQERL-KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKE 1043
             +++ V KLQE L K+ P           + LS E  ++A   FN+ LR   ASKRVLKE
Sbjct: 996  TIIDHVRKLQEDLMKLFPSYHRGGDGYIRNTLSRERIESALTLFNVHLRQLLASKRVLKE 1055

Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
            ++L   AFE+++ EI +++ QSL  PGE IG +AAQS GEPATQMTLNTFH AG+S+KNV
Sbjct: 1056 YKLNDRAFEYLLKEIRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNV 1115

Query: 1104 TLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWY 1163
            TLGVPRL E++NV++  K  S++V L P  +  K  A+  Q  +EY TL S+T   +  Y
Sbjct: 1116 TLGVPRLLELLNVSRNQKHASMTVSLFPPYDE-KRNAQKAQHLIEYCTLESITRRIQFIY 1174

Query: 1164 DPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKI------SPWLLRIELNREMMVDKKLSMA 1217
            DPDP  T++E D + ++  + + DE  A  +I      SPW++R+EL+ +M+ DK L M 
Sbjct: 1175 DPDPRHTVVEADRDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDKALDMK 1234

Query: 1218 AVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEA----PKGELNDESAEDDVFLK-- 1271
             V + I +  +  +      +N  +  +R+R   +E     PK +    +    V L+  
Sbjct: 1235 DVKQAILRVDESYIIETGMANNVRQRTIRMRSRYNEGADSIPKLKREIPALLARVHLRGI 1294

Query: 1272 ---------------------KIESNMLTEMALRGVNL---LAVMCHED----VDARRTT 1303
                                 K+  N +  +   G  L      +  ED    ++A +T+
Sbjct: 1295 PGVRRALLKDTTEFTVDQATGKMSGNKIWAIDTDGTALRRAFIGVVGEDGKNIINAVKTS 1354

Query: 1304 SNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHG 1363
            SN + E+  +LGIEA R  +L ELR      G  +NYRH  IL DT+   G+LMA++R G
Sbjct: 1355 SNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVSRSG 1414

Query: 1364 INRNDT-GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLND 1422
            INR+DT GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG  A +GTG   L LN 
Sbjct: 1415 INRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDLVLNM 1474

Query: 1423 EMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPV---TDA 1479
              L+ A+  Q  +   G +  +           YH    S G     N++ S      D 
Sbjct: 1475 AALQQAVP-QAEAVAPGKDVNV-----------YH----SLGSTLQQNIQSSIAYRPRDH 1518

Query: 1480 QFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT 1539
              +P+V   +       G   SS   + S+P Y+P++  +       +        TSP 
Sbjct: 1519 DATPFVNNASLFLRQGFGGGSSSAPVTASAP-YNPSTTYHGGRLEASAVHRSQAYSTSPA 1577

Query: 1540 Y------SPSSPGYS--PTSPAYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1590
                   + +S  YS   ++ A++P S   S  +      +  S      S +PTS   S
Sbjct: 1578 LEYGGREASASQMYSVMSSASAFNPVSTRMSSVAHSYSEYSEASSYHLQHSVAPTSMQAS 1637

Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTS-PAYSPTSPAYSPTSPSYSPTSPSYSPTS---PSYS 1646
                  S T       S  Y+P +  + +P S  Y+ T    S +  S S ++   P+ S
Sbjct: 1638 LPRTDNSMTMQGIGSVSVPYTPHAMSSAAPPSQVYASTEVGRSHSEDSRSQSALYVPTLS 1697

Query: 1647 PTSPSYS 1653
            PT   Y+
Sbjct: 1698 PTHAGYA 1704


>gi|31127048|gb|AAC03137.3| RNA polymerase II largest subunit [Mastigoproctus giganteus]
          Length = 887

 Score = 1081 bits (2796), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/893 (59%), Positives = 664/893 (74%), Gaps = 10/893 (1%)

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVITPDP + ID++G+P SIA NLT+PE VTP+NI+++ ELV  G +  PG   AKY
Sbjct: 1    SARTVITPDPNLRIDEVGIPRSIAQNLTFPEIVTPFNIDKMHELVRRGNNQYPG---AKY 57

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            IIRD+G+R+DLR+  K+SD HL+ GYKVERH+ +GD V+FNRQP+LHKMS+MGH+I+++P
Sbjct: 58   IIRDNGERIDLRFHPKASDLHLQCGYKVERHVKNGDVVIFNRQPTLHKMSMMGHKIRVLP 117

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            +STFRLNLSVT+PYNADFDGDEMN+HVPQS ETRAEV EL +VP+ I++PQSN+PVMGIV
Sbjct: 118  WSTFRLNLSVTTPYNADFDGDEMNLHVPQSLETRAEVQELALVPRQIITPQSNKPVMGIV 177

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL   RK+TKRD F+EKD  MN+LM+   +DGK+P P +LKP+PLWTGKQ+F+LIIP 
Sbjct: 178  QDTLTAVRKMTKRDVFLEKDQMMNLLMFLPIWDGKMPMPAVLKPKPLWTGKQLFSLIIPD 237

Query: 588  QINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
             +NL RT + H D+ D G    ++ GDT V IE G+L+SG +CKKT+G+++GSL+HV++ 
Sbjct: 238  NVNLIRTHSTHPDDEDDGPYKWISPGDTKVLIEHGQLISGIVCKKTVGSASGSLMHVVFA 297

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
            E+G + A  F GH Q +VN WLL    +IGIGDTIAD +T   I +TI KAK++V  +I+
Sbjct: 298  ELGHEVAGAFYGHIQTVVNNWLLLEGHTIGIGDTIADPQTYIDIQNTIKKAKHDVIEVIE 357

Query: 704  QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
            +A +  LEP PG T+ ++FEN+VN++LN ARD+ G+SAQKSLSE NN KAMV +G+KGS 
Sbjct: 358  KAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMVVSGAKGSK 417

Query: 764  INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
            INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 418  INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF 477

Query: 824  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
            HAMGGREGLIDTAVKT+ETGYIQRRL+KAME +M  YDGT+RNS G VIQ  YGEDG+D 
Sbjct: 478  HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMATYDGTIRNSTGQVIQLRYGEDGLDG 537

Query: 884  VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
              +E Q+L +LK     F+K FRF+   E        ++ + DL          + E ++
Sbjct: 538  SAVEFQSLPTLKPSNKAFEKRFRFDAANERHLRRIFTEDVVRDLLGSATALSELEKEWER 597

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            L+ DR  L T   T GDS   LP NL+R+IWNAQK F+V+ R P+D+ P  V+  V+ L 
Sbjct: 598  LKKDREVLRTVFPT-GDSKVVLPCNLQRMIWNAQKIFRVNARAPTDLSPFRVIHGVEDLV 656

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
            ++L +VPGED LS++A +NATL F  LLRST  +KRV +E RL+ EAFEW++GEI++RF 
Sbjct: 657  KKLIIVPGEDRLSIQANENATLLFRALLRSTLCTKRVAEEFRLSSEAFEWLLGEIDTRFQ 716

Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
            Q+ V P                          AGVSAKNVTLGVPRL+EIIN++K+ KTP
Sbjct: 717  QAQVQPXXXXXXXXXXXXXXXXXXXXXXXXXXAGVSAKNVTLGVPRLKEIINISKRPKTP 776

Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
            SL+VFL        E+AK+V C LE+TTLR VT  T ++YDPDP  T+I ED EFV  YY
Sbjct: 777  SLTVFLTGAAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYY 836

Query: 1184 EMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
            EMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIFN
Sbjct: 837  EMPDFD--PSRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFN 887


>gi|123979348|gb|ABM81499.1| RNA polymerase II largest subunit [Erioderma verruculosum]
          Length = 995

 Score = 1080 bits (2794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/1013 (54%), Positives = 712/1013 (70%), Gaps = 36/1013 (3%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            FM  +  ++ +VC NC KIL DE +  F  AL+ R+PK R   +   CK K  CE     
Sbjct: 1    FMTKIKKLLETVCHNCGKILVDESNPAFTDALRYRDPKRRFDAVWRLCKPKMICETASHA 60

Query: 154  DVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLT 213
            D    D  +  K + GGCG  QP++  EG+++   +KAQ+   +++ Q P     K+ +T
Sbjct: 61   DDDSMDKLKEPKHDHGGCGNVQPEVRREGLRLNGTWKAQKGDEENEGQQPG----KKPIT 116

Query: 214  AERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP------------VRPSDD 261
             +  L + + IS E+ + +GL+  YARP+WMI+ VLP+PPPP            VR  DD
Sbjct: 117  PQMALNIFRHISTEEIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGVRGEDD 176

Query: 262  LTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 321
            LT++L  IIR N N+RR E  G+PAH++ EF QLLQFH+ATY DN++ GQP+A Q+SGRP
Sbjct: 177  LTYKLGDIIRANGNVRRCETEGSPAHVVMEFEQLLQFHVATYMDNDIAGQPQALQKSGRP 236

Query: 322  IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 381
            +KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPETVT
Sbjct: 237  VKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVT 296

Query: 382  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 441
            PYNI +L +LV+ GP+  PG   AKY+IR+ G+R+DLR+ K++ +  L+ G+KVERH+ D
Sbjct: 297  PYNIHKLHQLVKNGPNEHPG---AKYVIRESGERIDLRHHKRAGEISLQYGWKVERHIVD 353

Query: 442  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 501
            GDF++FNRQPSLHK S+MGHR+++MPYSTFRLNLSVTSPYNADFDG EMN+HVPQS ETR
Sbjct: 354  GDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGGEMNLHVPQSEETR 413

Query: 502  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 561
            AE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ K+  MNIL+W  D+DG
Sbjct: 414  AEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQAMNILLWVPDWDG 473

Query: 562  KVPQPTILKPRPLWTGKQVFNLIIPKQINLFR--TAAWHADNDKGILTAGDTLVRIEKGE 619
             +PQP ILKPRP WTGKQ+ +L+IP  +NL R  +  +   ND G+L +G        G+
Sbjct: 474  LLPQPAILKPRPKWTGKQIISLVIPPGLNLNRPVSEGFSPVNDDGLLVSG--------GK 525

Query: 620  LLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 679
            L+ G L KK++G S   ++H+I+ E GP+AA KF    Q +VN+WLL N FSIGIGDTI 
Sbjct: 526  LMYGLLSKKSVGASGSGIVHIIFNEKGPEAAMKFFNGAQTVVNFWLLHNGFSIGIGDTIP 585

Query: 680  DAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGS 739
            D  T++ I D ++K K +V  + + A +  LEP PG  + E+FE+KV++ LN ARD+AG+
Sbjct: 586  DRNTIQQIEDAVNKQKEDVAEITRSATENELEPLPGMNVRETFESKVSKALNKARDDAGT 645

Query: 740  SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDD 799
              +KSL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDD
Sbjct: 646  VTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDD 705

Query: 800  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
            Y PESRGFVENSYLRGLTP EFFFHAM GREG IDTAVKT+ETGYIQRRLVKA+ED+M K
Sbjct: 706  YSPESRGFVENSYLRGLTPTEFFFHAMAGREGFIDTAVKTAETGYIQRRLVKALEDVMAK 765

Query: 860  YDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE----ENWN 915
            YDGTVRNSLGD++QF+YGEDG+D V IESQ +D +     +F K FR ++ E     + +
Sbjct: 766  YDGTVRNSLGDIVQFVYGEDGLDGVHIESQHVDIITCSDEQFKKKFRVDLMEPRPDTSIS 825

Query: 916  PNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWN 975
            P+++  E + D+     L+ + D E  +++A R  L       G+    LP+N+ R++  
Sbjct: 826  PDFL--EQVQDMVGDSNLQVLLDEEYDQIKAAREFLRLN-TQDGNDQLQLPINVIRILDT 882

Query: 976  AQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1035
            A+ TFK+     S++HP +VV  V  L ERL VV G+D LS E Q NATL F   LRS  
Sbjct: 883  AKTTFKIKDGSRSNLHPTDVVPQVQDLLERLVVVRGDDDLSKEGQHNATLLFKAQLRSRL 942

Query: 1036 ASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQM 1088
            A KR++ E  L + AF+ V+GEIESRF ++ V PGEM+G +AAQSIGEPATQM
Sbjct: 943  AFKRLIMESSLNKLAFQHVLGEIESRFCRAAVNPGEMVGVLAAQSIGEPATQM 995


>gi|154342676|ref|XP_001567286.1| RNA polymerase ii largest subunit [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134064615|emb|CAM42715.1| RNA polymerase ii largest subunit [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1662

 Score = 1077 bits (2786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1725 (38%), Positives = 957/1725 (55%), Gaps = 170/1725 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
             P S   + KV  VQF +    +I+  +   +EH ++ E G+P  GG++D R+GT D + 
Sbjct: 7    LPPSQMPLQKVHEVQFEVFKESQIKAYAKCIVEHAKSYEHGQPVRGGINDLRMGTTDFEY 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
             CETC     ECPGHFG++ELA+P+F+I     VL  ++ VC  C  +L D +D    + 
Sbjct: 67   SCETCGLKHPECPGHFGYVELAEPIFNINVFDIVLIALKCVCKYCGALLMDTNDPSELKK 126

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            +      NRL+ +   C +  K       D+ G +G+            +QP++     +
Sbjct: 127  IAHLQGLNRLRMVAKLCGSVCK----RSKDIQGCEGK-----------GRQPRIG----R 167

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
                Y   + K   +EQ            A+    VL R+SD D  ++G +P+   P  +
Sbjct: 168  FAGIYPGLQIKVTQEEQ-------DYVWHADNAWQVLDRVSDSDALIMGFDPRCCHPRDL 220

Query: 245  ILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
            IL VLPIPPP VRP+         D+LTHQ+  I++ N  LR+ + +G  A +    A L
Sbjct: 221  ILTVLPIPPPQVRPAVSFGSAKSDDELTHQIMSIVKRNIQLRKDKESGVKAAVDRSRA-L 279

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQ H+AT+F+N       A     + +KS+  RLK K GR+RGNLMGKRVDFSARTVIT 
Sbjct: 280  LQEHVATFFNNASTFYKPAKVGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITG 339

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP I++D++GVP+S+A+ LT+PE V   N +RL + V+   +P      A Y+IR +G  
Sbjct: 340  DPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTDFVQRVTYP-----SANYVIRPNGNV 394

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
              L  +K  S  +L++G  VERH+ DGD VLFNRQP+LH+MS+MGHR++++ Y+TFRLNL
Sbjct: 395  TKLALVKDRSAVNLDVGDVVERHIIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNL 454

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            S T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGIVQD+LLG  
Sbjct: 455  SCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSY 514

Query: 536  KITKRDTFIEKDVFMNILMW---WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
            ++T +DTF++K    ++ +W   WE     +P P ILKPRPLWTGKQ+F+LI+P ++N  
Sbjct: 515  RLTDKDTFVDKYFIQSVALWLDLWE-----LPIPAILKPRPLWTGKQIFSLILP-EVN-- 566

Query: 593  RTAAWHADN--DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
                 H  +  DK      D  + I++G+LL G++ K  +G + GSLIHVI+ E G D  
Sbjct: 567  -----HPASPYDKPPFPHNDKKIMIQRGQLLVGSITKGVVGAAPGSLIHVIFNERGSDEV 621

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
             KF+   Q +  Y+    AFS+G+ DT+ADA T++ +N+ + K + +V+ +   A +  L
Sbjct: 622  AKFINGVQRVTTYFNYCFAFSVGVQDTVADATTLKEMNNVLHKTRQSVEKIGAAANNGKL 681

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
              + G ++++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKGS +NI Q+ 
Sbjct: 682  TRKAGMSLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIA 741

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
              VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EF+FH M GRE
Sbjct: 742  VFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMATRGYVEGLQPHEFYFHTMAGRE 801

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE-SQ 889
            GLIDTAVKTS+TGY+QR+LVKA+ED+   YDGTVRN+  ++IQ +YGEDG+D   IE +Q
Sbjct: 802  GLIDTAVKTSDTGYLQRKLVKALEDVHASYDGTVRNANQELIQLVYGEDGLDGARIEGNQ 861

Query: 890  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYID---------DLKTIKELRDVFDAE 940
                  M   E    +R+E ++E      M   Y+D         D +++ +L++ FD  
Sbjct: 862  AFPIPHMTNCELVDKYRYEYNDEGSFSENMGGHYMDPFVRDSLLRDPQSVLKLQEEFDQL 921

Query: 941  VQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
            V+     R  L  ++         LPVN+ RLI NA+ T      + S+++P+ V+  V 
Sbjct: 922  VKDRAMSR--LVIDMEDKNKLKMNLPVNVARLIQNARTTMG-KRSQVSNLNPITVINRVR 978

Query: 1001 KLQERL-KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREA 1050
            +LQE L ++ P           + LS +  + A   F I LR    SKRVLKE++L  +A
Sbjct: 979  ELQEDLVQLFPSYHKDYNGRFVNVLSQQRVERALTLFGIHLRQVLGSKRVLKEYKLNDKA 1038

Query: 1051 FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL 1110
            FE+++ EI +++ QSL+ PGE+IG +AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL
Sbjct: 1039 FEYLLKEIRTKYQQSLITPGEIIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRL 1098

Query: 1111 REIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGT 1170
             E++NV+K  +  S++V L       + +A+  Q  +EY TL ++T   ++ YDP+P  T
Sbjct: 1099 LELLNVSKNQRNASVAVCLIREYQK-RNKAQEAQQFIEYCTLANITTTVQIIYDPNPRNT 1157

Query: 1171 IIEEDVEFVKSYYEMPDEDIAPEKI----SPWLLRIELNREMMVDKKLSMAAVAEKINQE 1226
            ++ ED E ++    + +E+   + +    SP++ R+ L+ ++  DK+L+M  V   I Q 
Sbjct: 1158 VVAEDEEMIRWEQAVMNEEEEEQDVEQPPSPFIARLILDSDLFNDKRLNMKDVKSAIRQ- 1216

Query: 1227 FDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV 1286
             DD  T   N +N  + I+R+R      P+     +S      L K  + +L  + LRG+
Sbjct: 1217 VDDTYTVQANMENDGQRIVRLR------PRKCTGADSVPA---LTKAVAQLLQSVHLRGI 1267

Query: 1287 ----------------------------------------NLLAVMCHED---VDARRTT 1303
                                                      + V+ +E    +D  +T+
Sbjct: 1268 PGIKKTLLKEGNTFRVDPETGGMKNESSWMVDTEGTALQRIFVGVVNNEGKNIIDFVKTS 1327

Query: 1304 SNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHG 1363
            SN + E++ VLGIEA RR LL ELR      G  +NYRH  IL DTM  RG+LMA++R G
Sbjct: 1328 SNKIPEVVSVLGIEAARRKLLFELREAYLAYGLNINYRHYTILVDTMCQRGYLMAVSRTG 1387

Query: 1364 INRNDT-GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLND 1422
            INR++T GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG  A IGTG   L L+ 
Sbjct: 1388 INRSETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSANLVLGNQARIGTGLFDLMLDM 1447

Query: 1423 EMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPG--YLFSPNLRLSPVTDAQ 1480
              L++ + L             T AR+  S   + D  ++PG   L  P   L P T  +
Sbjct: 1448 SKLQHVVPLD----------KATEART--SNVYHTDTSVAPGSSTLQGPYGELPPSTVHE 1495

Query: 1481 FSPYVGGMA--FSPTSSPGYSPSSPGYSPSSPGYS---PTSPGYSPTSPGYSP-TSPGYS 1534
             S    G +  + P    G     P    S+  +S   PT+ G +  +   S   S  + 
Sbjct: 1496 NSSLAAGTSSVYPPHRGAGLYGGIP-IEASAVQFSSILPTTMGAALVASNTSEYQSSHHL 1554

Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTS 1593
              + TY  SS    P++ A      SY   S + S T+  Y+P  +P       +  P  
Sbjct: 1555 SGASTYLASSA--LPSTSALDTELSSYHLQSAANS-TAYGYAPMVAPRIPMPGGAQLPVG 1611

Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPA-YSPT---SPSYSPT 1634
               S + P  +     +     A S  + A Y PT   S  +SPT
Sbjct: 1612 EGGSISYPYEASNGDLFGSLGGAASSRASAPYDPTQQLSQEFSPT 1656


>gi|13310932|gb|AAF36438.2|AF126254_1 RNA polymerase II largest subunit [Leishmania donovani]
          Length = 1665

 Score = 1075 bits (2780), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/1499 (40%), Positives = 874/1499 (58%), Gaps = 120/1499 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
             P S   + KV  VQF +    +I+  +   IEH ++ E G+P  GG++D R+GT D + 
Sbjct: 7    LPPSQMPLQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYEHGQPVRGGINDLRMGTTDFEY 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
             CETC     ECPGHFG++ELA+P+F+I     VL  ++ VC  C  +L D +D    + 
Sbjct: 67   SCETCGLKHPECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTNDPSEMKK 126

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            +      NRL+ +   C +  K       D+ G +G+            +QP++     +
Sbjct: 127  IAHLQGLNRLRMVAKLCGSVCK----RSKDIQGCEGK-----------GRQPRIG----R 167

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
                Y   + K   +EQ            AE    VL R+SD D  ++G +P++  P  +
Sbjct: 168  FAGIYPGLQIKVTQEEQ-------DYVWHAENARQVLDRVSDSDALIMGFDPRFCHPRDL 220

Query: 245  ILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
            IL VLPIPPP VRP+         D+LTHQ+  I++ N  LR+ + +G  A +    A L
Sbjct: 221  ILTVLPIPPPQVRPAVAFASAKSDDELTHQIMSIVKRNIQLRKDKESGVKAAVDRSRA-L 279

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQ H+AT+F+N       A     + +KS+  RLK K GR+RGNLMG RVDFSARTVIT 
Sbjct: 280  LQEHVATFFNNASTYYKPAKVGDTKKLKSLTERLKGKYGRLRGNLMGSRVDFSARTVITG 339

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP I++D++GVP+S+A+ LT+PE V   N +RL E V+   +P      A YIIR +G  
Sbjct: 340  DPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRTTYP-----SANYIIRPNGNV 394

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
              L  +K  +  HL++G  VERH+ DGD VLFNRQP+LH+MS+MGHR++++ Y+TFRLNL
Sbjct: 395  TKLALVKDRNAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNL 454

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            S T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGIVQD+LLG  
Sbjct: 455  SCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSY 514

Query: 536  KITKRDTFIEKDVFMNILMW---WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
            ++T +DTF++K    ++ +W   WE     +P P ILKPRPLWTGKQ+F+LI+P ++N  
Sbjct: 515  RLTDKDTFVDKYFIQSVALWLDLWE-----LPIPAILKPRPLWTGKQIFSLILP-EVN-- 566

Query: 593  RTAAWHADN--DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
                 H  +  DK      D  + I++G+LL G + K  +G + GSLIHVI+ E G D  
Sbjct: 567  -----HPASPYDKPPFPHNDKKIMIQRGQLLVGAITKGVVGAAPGSLIHVIFNERGSDEV 621

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
             KF+   Q +  Y+    AFS+G+ DT+ADA T++ +N+ + K + +V+ +   A +  L
Sbjct: 622  AKFINGVQRITTYFNYCFAFSVGVQDTVADATTLKEMNNVLHKTRQSVEKIGAAANNGQL 681

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
              + G ++++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKGS +NI Q+ 
Sbjct: 682  TRKAGMSLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIA 741

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
              VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EF+FH M GRE
Sbjct: 742  VFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMATRGYVEGLQPHEFYFHTMAGRE 801

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE-SQ 889
            GLIDTAVKTS+TGY+QR+LVKA+ED+   YDGTVRN+  ++IQ  YGEDG+D   IE +Q
Sbjct: 802  GLIDTAVKTSDTGYLQRKLVKALEDVHASYDGTVRNANQELIQLAYGEDGLDGARIEGNQ 861

Query: 890  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRD-----VFDAEVQKL 944
                  M  SE    +R+E ++E      M   Y+D       LRD         E ++L
Sbjct: 862  AFPIPHMTNSEMADKYRYEYNDEGSFSENMGGHYMDPFVRDSLLRDPQSVLKVQEEFEQL 921

Query: 945  EADRY--QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
              DR   +L  ++         LPVN+ RLI NA+ T     +  +      V+  V +L
Sbjct: 922  MKDRAMSRLVIDMEDKNKLKMNLPVNVARLIQNARTTMGKRSQVSNLNRITTVINRVREL 981

Query: 1003 QERL-KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFE 1052
            QE L ++ P           + LS +  + A   F I LR    SKRVLKE++L  +AFE
Sbjct: 982  QEDLVQLFPSYHKDYSGRFANVLSQQRVERALTLFGIHLRQILGSKRVLKEYKLNDKAFE 1041

Query: 1053 WVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLRE 1112
            +++ EI +++ +SL+ PGE+IG +AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E
Sbjct: 1042 YLLKEIRTKYQESLITPGEIIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLE 1101

Query: 1113 IINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTII 1172
            ++NV+K  +  S++V L       + +A+  Q  +EY TL ++T   ++ YDPDP  T++
Sbjct: 1102 LLNVSKNQRNASVAVCLIREYQK-RNKAQEAQQFIEYCTLANITTTVQIIYDPDPRNTVV 1160

Query: 1173 EEDVEFVK-SYYEMPDEDIAPEKI---SPWLLRIELNREMMVDKKLSMAAVAEKINQEFD 1228
             ED E ++     M +ED  P+     SP++ R+ L+ ++  DK+L+M  V   I Q  D
Sbjct: 1161 AEDEEMIRWEQAVMNEEDEEPDAEQPPSPFIARLILDNDLFNDKRLNMKDVKSAIRQ-VD 1219

Query: 1229 DDLTCIFNDDNADKLILRIR-------------------IMNDEAPKG----------EL 1259
            D      N +N  + I+R+R                   ++     +G          E 
Sbjct: 1220 DTYMVQANMENDGQRIVRLRPRKCTGADSVPALTKAVAQLLQSVHHRGIPGIKKTLLKEG 1279

Query: 1260 NDESAEDDVFLKKIESNMLTE---MALRGVNLLAVMCHED---VDARRTTSNHLIEIIEV 1313
            N    + +    K ES+ + +    AL+ +  + V+ +E    +D  +T+SN + E++ V
Sbjct: 1280 NTFRVDPETGGIKNESSWMVDTEGTALQRI-FVGVVNNEGKNIIDFSKTSSNKIPEVVTV 1338

Query: 1314 LGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT-GPM 1372
            LGIEA RR LL ELR      G  +NYRH  IL DTM  RG+LMA++R GINR++T GP+
Sbjct: 1339 LGIEAARRKLLSELREAYLAYGLNINYRHYTILVDTMCQRGYLMAVSRTGINRSETSGPL 1398

Query: 1373 MRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL 1431
            MRCSFEETV +L+ AA F E D +RGV+ +++LG  A IGTG   L L+   L++ + L
Sbjct: 1399 MRCSFEETVKVLMTAAAFGEKDPVRGVSASLVLGNQARIGTGLFDLLLDMSKLQHVVPL 1457


>gi|358030892|dbj|BAL15355.1| RNA polymerase II largest subunit, partial [Olpidium bornovanus]
          Length = 838

 Score = 1074 bits (2777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/836 (60%), Positives = 648/836 (77%), Gaps = 9/836 (1%)

Query: 260  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
            DDLTH+L+ +++ N N++R E  GAPAHII EF+ LLQFH+ T  +NE  G P+A Q+SG
Sbjct: 6    DDLTHKLSDMLKANANVKRCETEGAPAHIIEEFSNLLQFHVNTMINNEGAGSPQALQKSG 65

Query: 320  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
            RP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP ++ID++G+P SIA NLT+PE 
Sbjct: 66   RPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEVGIPRSIARNLTFPEI 125

Query: 380  VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHL 439
            VTPYNI+ +++LV  GP+  PG   AKY+IRD G+R+DLRY ++S D  L++G++VERHL
Sbjct: 126  VTPYNIDAMQQLVRNGPNEHPG---AKYVIRDTGERIDLRYHRRSGDIPLQIGWRVERHL 182

Query: 440  NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV----TSPYNADFDGDEMNMHVP 495
             DGD ++FNRQPSLHKMS+MGH+++IMPYSTFRLNLSV    + PYNADFDGDEMNMHVP
Sbjct: 183  VDGDTIVFNRQPSLHKMSMMGHKVRIMPYSTFRLNLSVCGPISHPYNADFDGDEMNMHVP 242

Query: 496  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 555
            QS E +AE+ E+ MVPK IV+P S++P MGIVQDTL G RK+TKRD F++K   MN+ MW
Sbjct: 243  QSLEAKAEINEICMVPKQIVAPASSKPCMGIVQDTLCGIRKMTKRDVFLDKAFVMNMAMW 302

Query: 556  WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRI 615
              D+DG +P P ILKP+PLWTGKQ+ +++IPK +N+    + H DN+   ++ GDT V I
Sbjct: 303  VPDWDGVLPIPAILKPKPLWTGKQMLSMLIPKGVNVQTFHSEHPDNELTDISPGDTKVII 362

Query: 616  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 675
            E GELL+G +CKKT+G S G L+HVIW+E GP+  + +   TQ LVNYWL Q  FSIGIG
Sbjct: 363  ENGELLAGIVCKKTVGASAGGLVHVIWQEKGPEVCKTWFNGTQRLVNYWLFQYGFSIGIG 422

Query: 676  DTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARD 735
            DT+AD KTM+ +   I +AK  V  LI +A    ++P PG T+ E+FE +VN  LNTARD
Sbjct: 423  DTVADTKTMQNVTSAIQQAKERVAELILEAHQDRMKPMPGMTIRETFEAQVNSALNTARD 482

Query: 736  EAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 795
            +AG SAQ+SL+  NN+K MV AGSKGS+INISQMTACVGQQNVEGKRIPFGF  RTLP F
Sbjct: 483  QAGKSAQQSLNPENNVKQMVVAGSKGSYINISQMTACVGQQNVEGKRIPFGFKYRTLPCF 542

Query: 796  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 855
            TKDD+ PESRGFVENSYLRGLTPQEF+FHAMGGREGLIDTAVKT+ETGYIQRRL+KA+ED
Sbjct: 543  TKDDHTPESRGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKALED 602

Query: 856  IMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE--EN 913
            +MVKYDGTVRNS+ +VIQF YGEDG+D  ++E Q L+ L+M  + F++ +   + +  + 
Sbjct: 603  VMVKYDGTVRNSMNEVIQFSYGEDGLDGAFVERQQLEGLRMSSARFEQHYCVNLKDRKKT 662

Query: 914  WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLI 973
            +    +  E ++ L    + + V DAE ++L+ D+  L+  I  SG+  WPLP NL+RLI
Sbjct: 663  FRSGSLRPELLEQLSKSDQAQKVLDAEFEQLKXDKRLLSDFIFVSGEDKWPLPCNLRRLI 722

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
            WNA++ F +  R PSD+HP +VV  V KL ERL VV G D +S +AQ NATL F +LLR 
Sbjct: 723  WNAKQIFHLSGREPSDIHPAQVVXGVKKLSERLMVVRGSDKISEQAQANATLLFQMLLRQ 782

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1089
            TFAS+RV++++RL+ +AFEW++GE+E+RF  SLVAPGEM+G +AAQSIGEPATQMT
Sbjct: 783  TFASRRVIEDYRLSAQAFEWILGEVEARFNTSLVAPGEMVGPLAAQSIGEPATQMT 838


>gi|91095991|gb|AAW56763.2| RNA polymerase II largest subunit [Hygrophoropsis aurantiaca]
          Length = 991

 Score = 1071 bits (2769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/1011 (54%), Positives = 709/1011 (70%), Gaps = 42/1011 (4%)

Query: 93   GFMKTVLSIMRSVCFNCSKILAD-EDDHKFKQALK-IRNPKNRLKKILDACKNKTKCEGG 150
            GF+  V  I+  +C NC K+ AD   D  F   ++ +R+PK R+  +   CK K  CE  
Sbjct: 1    GFIVKVKKILECICVNCEKLKADISSDPNFADKIRHVRDPKARMAVVWAHCKTKMTCET- 59

Query: 151  DEIDVPGQDG--EEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            DE    G +G  EEP KK  GGCG  QP++  EG+K+  +YK  + +++D + L +P   
Sbjct: 60   DEPKEEGDNGDTEEP-KKGHGGCGHIQPQIRKEGLKLFVQYKRPKDEDEDVKSL-QP--D 115

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-----------LPIPPPPVR 257
            K+  T   V    K++SD D  L+GL+ +YARP+WMIL V           + +    +R
Sbjct: 116  KRLFTPSEVYTTFKKMSDSDLHLIGLSDEYARPEWMILTVMPVPPPPVRPSIAVDGGAMR 175

Query: 258  PSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQR 317
              DDLT++L  II+ + N+RR E+ GAPAH+I+EF QLLQFH+ATY DN++ G P+A Q+
Sbjct: 176  SEDDLTYKLGDIIKASVNVRRCEQEGAPAHVITEFEQLLQFHVATYMDNDIAGIPQALQK 235

Query: 318  SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYP 377
            SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT DP + +D++GVP SIA+NLTYP
Sbjct: 236  SGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLQLDEVGVPRSIAMNLTYP 295

Query: 378  ETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVER 437
            E VTPYNI  L+ELV  GP   PG   A+Y++RD G+R+DLRY  K +D  L+ G+ VER
Sbjct: 296  ERVTPYNIAYLQELVRNGPTAYPG---ARYVVRDTGERIDLRY-NKRADAFLQYGWIVER 351

Query: 438  HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
            HL DGDFVLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVT PYNADFDGDEMNMH+PQS
Sbjct: 352  HLKDGDFVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNMHIPQS 411

Query: 498  FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 557
             ETRAE+ ++  VP+ I+SP +N+PVMGIVQDTL G RK T RDTF++ +   NIL+W  
Sbjct: 412  EETRAELSQIAWVPRQIISPHANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNILLWVP 471

Query: 558  DFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGDTLVR 614
            D+DG VP P I+KP+PLWTGKQ+ +L+IP+ IN+ R     + N   D G++        
Sbjct: 472  DWDGAVPTPAIIKPKPLWTGKQILSLVIPRGINIHRAPDPKSSNPVFDDGMM-------- 523

Query: 615  IEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGI 674
            IE GE++ G + KKT+G S G LIHV++ E GP+A R      Q +VN+WL  N FSIGI
Sbjct: 524  IENGEIVFGIVEKKTVGASQGGLIHVVFREKGPEATRDLFTGIQMVVNFWLFHNGFSIGI 583

Query: 675  GDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR 734
            GD IA    M  I   I+  K  V  +I+ A    L+  PG T+ ESFE+KV + LN AR
Sbjct: 584  GDAIAGPNVMSFITQEINDRKQQVTTIIEDAYHDRLKAMPGMTIRESFESKVERELNRAR 643

Query: 735  DEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPH 794
            D +G  AQ++L E NN+K MV AGSKGS+INISQM+ CVGQQ+VEG+RIPFGF  RTLPH
Sbjct: 644  DTSGRYAQENLKEDNNVKQMVVAGSKGSYINISQMSVCVGQQSVEGRRIPFGFRHRTLPH 703

Query: 795  FTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAME 854
            FTKDD+ PE+RGFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E
Sbjct: 704  FTKDDFSPEARGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALE 763

Query: 855  DIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEE-- 912
            D+MV YDGTVRNSLGD++QF+ GEDGMD  +IE Q +D+  +   EF+  +R ++ +   
Sbjct: 764  DVMVCYDGTVRNSLGDLLQFVCGEDGMDGAFIERQKIDTFGLGDKEFEHNYRVDVTDAAG 823

Query: 913  NWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP--LPVNLK 970
             + P  +LQ  +DD  +  +L+   D E  +L +DR QL   +     +  P  LPVNL+
Sbjct: 824  GFLPG-VLQVGLDD--SSLDLQAKLDEEYNQLVSDRRQLREFVFPGATNLTPHYLPVNLQ 880

Query: 971  RLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 1030
            R+I NA +TF +D R+PSD+ P  +VEAV +L  RL VV G+D LS E Q NA+L F + 
Sbjct: 881  RIIQNAIQTFHIDRRKPSDLEPAYIVEAVQQLTSRLVVVLGDDHLSKETQANASLTFRMH 940

Query: 1031 LRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            +R+T AS+ VL+   L REAFEWV+GEIE++F QSLV PGEM G +AAQSI
Sbjct: 941  IRATLASRCVLERFHLNREAFEWVLGEIETKFNQSLVNPGEMCGTLAAQSI 991


>gi|119643502|gb|ABL85573.1| RNA polymerase II largest subunit [Lecidea fuscoatra]
          Length = 1016

 Score = 1070 bits (2768), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/992 (55%), Positives = 710/992 (71%), Gaps = 44/992 (4%)

Query: 118  DHKFKQALKIRNPKNRLKKILDACKNKTKCE--GGDEIDVPGQDGEEPLKKNKGGCGAQQ 175
            D +F+ AL+ R+PK R   I   CK K KCE   G E D  G D  +  K + GGCG   
Sbjct: 45   DPRFRDALRFRDPKKRFDAIWRLCKPKKKCETTAGQEDD--GLDKTKEPKHDHGGCGNTH 102

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P++  EG+K+I  +KAQ+ + +++ Q PE    K+ +T +  L V + IS  D + +GL+
Sbjct: 103  PEVRREGLKLIGTWKAQKGEEENEGQQPE----KKPITPQMALNVFRHISTGDIKTMGLS 158

Query: 236  PKYARPDWMILQVLPIPPPP------------VRPSDDLTHQLAMIIRHNENLRRQERNG 283
              YARP+WMI+ VLP+PPPP            +R  DDLT++L  IIR N N++R E  G
Sbjct: 159  NDYARPEWMIITVLPVPPPPVRPSISVDGGNGMRGEDDLTYKLGDIIRANGNVQRCETEG 218

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGK 343
            +PAHI++EF  LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGK
Sbjct: 219  SPAHIVTEFEHLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGK 278

Query: 344  RVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKT 403
            RVDFSARTVIT DP +++D++GVP SIA  LTYPETVTPYNIE+L + V+ GP+  PG  
Sbjct: 279  RVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIEKLHQXVKNGPNDHPG-- 336

Query: 404  GAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
             AKY+IRD G+R+DLR+ K++ +  L+ G+KVERH+ DGD+++FNRQPSLHK S+MGHR+
Sbjct: 337  -AKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHRV 395

Query: 464  KIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPV 523
            ++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+
Sbjct: 396  RVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNGPL 455

Query: 524  MGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNL 583
            MGIVQDTL G  K+ +RD F+ K+  MNIL+W  D+DG +PQP ILKPRP WTGKQ+ +L
Sbjct: 456  MGIVQDTLAGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAILKPRPKWTGKQIISL 515

Query: 584  IIPKQINL--FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            ++P  +NL  F +      ND G++ +G        GEL+ G   KK++G ++G +IH+I
Sbjct: 516  VVPPGLNLTRFSSEGLCPINDDGLMVSG--------GELMYGLFSKKSVGAASGGVIHII 567

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E GP+AA  F    Q +VN+WLL N FSIGIGDTI D  T++ I D +SK K +V  +
Sbjct: 568  FNEKGPEAATNFFNGAQTVVNHWLLHNGFSIGIGDTIPDRNTIKQIEDAVSKQKADVAEI 627

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
             + A +  LEP PG  + E+FE+KV++ LN ARD+AG+  ++SL + NN   M  +GSKG
Sbjct: 628  TRSATENELEPLPGVNVRETFESKVSKALNKARDDAGTVTEESLKDLNNAIQMARSGSKG 687

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EF
Sbjct: 688  STINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEF 747

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+
Sbjct: 748  FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGL 807

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFE-MD---EENWNPNYMLQ--EYIDDLKTIKELRD 935
            D V IE Q LD +     +F++ FR + MD   E + +P+Y+ Q  E   DL    E++ 
Sbjct: 808  DGVHIEPQKLDIITCSHEQFEQKFRVDLMDPRPEASISPDYLEQANEIAGDL----EVQS 863

Query: 936  VFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEV 995
              D E ++L+A R  L        +    LP+N+ R+I  A+ TFK+     S++HP EV
Sbjct: 864  FLDEEFEQLQAARDFLRKN-KQDDNEQLQLPINVLRIIDTAKTTFKIKNGARSNLHPAEV 922

Query: 996  VEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVI 1055
            +  V +L ERL VV G+D LS+EAQ NATL F   LRS  A KR++KE+ L + AF+ +I
Sbjct: 923  IPQVRELLERLVVVRGDDELSIEAQHNATLLFKAQLRSRLAFKRLVKENSLNKLAFQHII 982

Query: 1056 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQ 1087
            GEIESRF ++ V PGEM+G +AAQSIGEPATQ
Sbjct: 983  GEIESRFCRAAVNPGEMVGVLAAQSIGEPATQ 1014


>gi|113957457|gb|ABI49115.1| RNA polymerase II largest subunit [Lobariella pallida]
          Length = 996

 Score = 1070 bits (2767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/1016 (53%), Positives = 717/1016 (70%), Gaps = 40/1016 (3%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            FM  +  ++ +VC NC KIL DE +  F  AL+ R+PK R   I   CK K  CE     
Sbjct: 1    FMTKIKKLLETVCHNCGKILVDESNPAFADALRFRDPKRRFDAIWRLCKPKLVCETAAVT 60

Query: 154  DVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLT 213
            +    D  +  K + GGCG  QP++  EGMK+   +K Q+   +++ Q PE    K+ +T
Sbjct: 61   EDENMDKTKEPKHDHGGCGNVQPEVRREGMKLNGTWKPQKGDEENEGQQPE----KKPIT 116

Query: 214  AERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP------------VRPSDD 261
             +  L + + IS+++ + +GL+  YARP+WMI+ VLP+PPPP            +R  DD
Sbjct: 117  PQTALNIFRHISNDEIRKMGLSSDYARPEWMIITVLPVPPPPVRPSISVDGGNGMRGEDD 176

Query: 262  LTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 321
            LT++L  IIR + N+R  E  G+PAH++++F QLLQFH+ATY DN++ GQP+A Q+SGRP
Sbjct: 177  LTYKLGDIIRASGNVRTCEAEGSPAHVVADFEQLLQFHVATYMDNDIAGQPQALQKSGRP 236

Query: 322  IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 381
            +KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPETVT
Sbjct: 237  VKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVT 296

Query: 382  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 441
            PYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KVERH+ D
Sbjct: 297  PYNIQKLHQLVKNGPNDHPG---AKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIID 353

Query: 442  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 501
            GD+++FNRQPSLHK S+MGHR+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETR
Sbjct: 354  GDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETR 413

Query: 502  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 561
            AE+ +L MVP  IVSPQ N P+MGIVQDTL G  K+ +RD F+ K+  MNIL+W  D+DG
Sbjct: 414  AEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKLCRRDVFLNKEQVMNILLWVPDWDG 473

Query: 562  KVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAA--WHADNDKGILTAGDTLVRIEKGE 619
             +PQP ILKPRP WTGKQ+ +L+IP  +NL R+++  +   ND G+  +G        GE
Sbjct: 474  VLPQPAILKPRPKWTGKQIISLVIPPGLNLTRSSSEGFSPLNDDGLFVSG--------GE 525

Query: 620  LLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 679
            L+ G   KK++G ++G +IH+I+ E GP+AA  F    Q +VNYWLL N FSIGIGDTI 
Sbjct: 526  LMYGLFDKKSVGATSGGIIHIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIP 585

Query: 680  DAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGS 739
            D  T++ I + +++ K +V  + + A +  LEP PG  + E+FE+KV++ LN ARD+AG+
Sbjct: 586  DRNTIQRIENAVNQQKEDVAEITRSATENDLEPLPGMNVRETFESKVSKALNKARDDAGT 645

Query: 740  SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDD 799
              ++ L + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDD
Sbjct: 646  VTEEGLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDD 705

Query: 800  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
            Y PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M K
Sbjct: 706  YSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAK 765

Query: 860  YDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD---EENWN 915
            YDGTVRNSLGD++QF+YGEDG+D V IE Q +D +     +F+K FR + MD   E + +
Sbjct: 766  YDGTVRNSLGDIVQFVYGEDGLDGVHIEPQRVDIITCSDEQFEKKFRVDLMDQRPEASIS 825

Query: 916  PNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLI 973
            P+++ Q  E   DL    E++   D E  +L+A R  L        +    LP+N+ R++
Sbjct: 826  PDFLEQATEMAGDL----EIQSYLDEEYDQLQAARDFLRKN-KRDDNEQLQLPINVIRIL 880

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
              A+ TFK+     S++HP EV+  V  L +RL VV G+D LS E Q NAT+ F   LRS
Sbjct: 881  DTAKTTFKIKDGARSNLHPAEVIPQVQDLLDRLIVVRGDDDLSREGQHNATILFKAQLRS 940

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1089
              A KR++ E  L + AF+ V+GEIESRF ++ V PGEM+G +AAQSIGEPATQMT
Sbjct: 941  RLAFKRLVMECSLNKLAFQHVLGEIESRFCRAAVNPGEMVGVLAAQSIGEPATQMT 996


>gi|110669652|gb|ABG81920.1| RNA polymerase II largest subunit, partial [Pleopsidium chlorophanum]
          Length = 1011

 Score = 1070 bits (2766), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 549/1024 (53%), Positives = 713/1024 (69%), Gaps = 32/1024 (3%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH-KFKQALKIRNPKNRLKKILDAC 141
            +ELA P+FH+GFM  +  ++ +VC NC K L DE D+  F  AL+ R+PK R   I   C
Sbjct: 3    IELATPVFHVGFMTKIKKLLETVCHNCGKPLVDEHDNPAFADALRQRDPKRRFDAIWRLC 62

Query: 142  KNKTKCEGG--DEIDVPGQDGEEPLKKNK-GGCGAQQPKLTIEGMKMIAEYKAQRKKNDD 198
            K K  CE    D+ D  G   E+  K +K GGCG  QP++  EG+++   +KAQR   ++
Sbjct: 63   KPKLICETSTVDDGDY-GSKLEKGKKTSKHGGCGNLQPEVRREGLRLTGTWKAQRGDEEN 121

Query: 199  QEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP--- 255
            + Q PE    K+ +T +  L + + IS ED + +GL+  YARP+WMI+ VLP+PPPP   
Sbjct: 122  ENQQPE----KKLITPQMALNIFRHISTEDIKKMGLSNDYARPEWMIITVLPVPPPPVRP 177

Query: 256  ----------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
                      +R  DDLT++L  IIR N N+RR E+ G+PAH++SEF  LLQFH+ATY D
Sbjct: 178  SISVDGTGQGMRGEDDLTYKLGDIIRANGNVRRCEQEGSPAHVVSEFEALLQFHVATYMD 237

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            N++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++G
Sbjct: 238  NDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVG 297

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP SIA  LTYPETVTPYNI +L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ 
Sbjct: 298  VPRSIAKTLTYPETVTPYNIHKLHQLVKNGPNEHPG---AKYVIRDSGERIDLRHHKRAG 354

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
            +  L+ G+KVERH+ DG           HK S+MGHR+++MPYSTFRLNLSVTSPYNADF
Sbjct: 355  EISLQYGWKVERHIVDGXXXXXXXXXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADF 414

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  K+ +RD F+ 
Sbjct: 415  DGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGVYKMCRRDVFLT 474

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGI 605
            K+  MNIL+W  D+DG +PQP ILKP P WTGKQ+ +L+IPK +NL R +      ++G+
Sbjct: 475  KEQVMNILLWVPDWDGVIPQPAILKPHPKWTGKQIISLVIPKGLNLIRGS------EEGL 528

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
              A D  + +  GEL+ G   KK++G S G +IH+I+ E GP+ A  F    Q +VNYWL
Sbjct: 529  SPANDDGLFVHGGELMYGLFSKKSVGASGGGIIHIIFNEKGPEVAMNFFNGAQTVVNYWL 588

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGDTI D  T++ I + ++K K +V  + + A +  LEP PG  + E+FE+K
Sbjct: 589  LHNGFSIGIGDTIPDRNTIQQIENAVNKHKADVAEITRSATENELEPLPGMNVRETFESK 648

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            V++ LN ARDEAG+  +KSL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPF
Sbjct: 649  VSKALNAARDEAGAETEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPF 708

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 709  GFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYI 768

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D   IE+Q +D +     +F+K F
Sbjct: 769  QRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGSHIEAQRVDIIACSDKQFEKKF 828

Query: 906  RFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL 965
            R ++ +     +  + E   ++    E++   D E ++L+ DR  L             L
Sbjct: 829  RVDLMDPKAGISPDVLELAAEIGGDVEVQQYLDEEWEQLKLDRAFLRKN-KHDDTEQMQL 887

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
            P+N+ R++  A+ TF++     SD+HP  V+ AV  L +RL VV G+D LS E Q NATL
Sbjct: 888  PINILRILETAKTTFRIKDGARSDLHPTIVIPAVRDLLDRLVVVRGDDKLSKEGQDNATL 947

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPA 1085
             F   LRS  A KRV+ E+ L + AF+ V+GEIESRF ++ V PGEM+G +AAQSIGEPA
Sbjct: 948  LFKAHLRSRLAFKRVVTEYSLNKLAFQHVLGEIESRFCRAAVDPGEMVGVLAAQSIGEPA 1007

Query: 1086 TQMT 1089
            TQMT
Sbjct: 1008 TQMT 1011


>gi|113957504|gb|ABI49116.1| RNA polymerase II largest subunit [Lobariella pallida]
          Length = 1002

 Score = 1069 bits (2764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/1022 (53%), Positives = 717/1022 (70%), Gaps = 40/1022 (3%)

Query: 88   PMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKC 147
            P+FH+G M  +  ++ +VC NC KIL DE +  F  AL+ R+PK R   I   CK K  C
Sbjct: 1    PVFHVGLMTKIKKLLETVCHNCGKILVDESNPAFADALRFRDPKRRFDAIWRLCKPKLVC 60

Query: 148  EGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVE 207
            E     +    D  +  K + GGCG  QP++  EGMK+   +K Q+   +++ Q PE   
Sbjct: 61   ETAAVTEDDNMDKTKEPKHDHGGCGNVQPEVRREGMKLNGTWKPQKGDEENEGQQPE--- 117

Query: 208  RKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP------------ 255
             K+ +T +  L + + IS+++ + +GL+  YARP+WMI+ VLP+PPPP            
Sbjct: 118  -KKPITPQMALNIFRHISNDEIRKMGLSSDYARPEWMIITVLPVPPPPVRPSISVDGGNG 176

Query: 256  VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRAT 315
            +R  DDLT++L  IIR + N+R  E  G+PAH++++F QLLQFH+ATY DN++ GQP+A 
Sbjct: 177  MRGEDDLTYKLGDIIRASGNVRTCEAEGSPAHVVADFEQLLQFHVATYMDNDIAGQPQAL 236

Query: 316  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 375
            Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LT
Sbjct: 237  QKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLT 296

Query: 376  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 435
            YPETVTPYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KV
Sbjct: 297  YPETVTPYNIQKLHQLVKNGPNDHPG---AKYVIRDTGERIDLRHHKRAGEISLQYGWKV 353

Query: 436  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 495
            ERH+ DGD++ FNR  + HK S+MGHR+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVP
Sbjct: 354  ERHIIDGDYIXFNRHHAXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 413

Query: 496  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 555
            QS ETRAE+ +L MVP  IVSPQ N P+MG VQDTL G  KI +RD F+ K+  MNIL+W
Sbjct: 414  QSEETRAEINQLCMVPLNIVSPQRNGPLMGTVQDTLCGIYKICRRDVFLNKEQVMNILLW 473

Query: 556  WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAA--WHADNDKGILTAGDTLV 613
              D+DG +PQP ILKPRP WTGKQ+ +L+IP  +NL R+++  +   ND G+  +G    
Sbjct: 474  VPDWDGVLPQPAILKPRPKWTGKQIISLVIPPGLNLTRSSSEGFSPLNDDGLFVSG---- 529

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
                GEL+ G   KK++G ++G +IH+I+ E GP+AA  F    Q +VNYWLL N FSIG
Sbjct: 530  ----GELMYGLFNKKSVGATSGGIIHIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIG 585

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGDTI D  T++ I + +++ K +V  + + A +  LEP PG  + E+FE+KV++ LN A
Sbjct: 586  IGDTIPDRNTIQRIENAVNQQKEDVAEITRSATENDLEPLPGMNVRETFESKVSKALNKA 645

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RD+AG+  ++ L + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLP
Sbjct: 646  RDDAGTVTEEGLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLP 705

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+
Sbjct: 706  HFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 765

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD-- 910
            ED+M KYDGTVRNSLGD++QF+YGEDG+D V IE Q +D +     +F+K FR + MD  
Sbjct: 766  EDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQRVDIITCSDQQFEKKFRVDLMDQR 825

Query: 911  -EENWNPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPV 967
             E + +P+++ Q  E   DL    E++   D E  +L+A R  L        +    LP+
Sbjct: 826  PEASISPDFLEQATEMAGDL----EIQSYLDEEYDQLQAARDFLRKN-KRDDNEQLQLPI 880

Query: 968  NLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFF 1027
            N+ R++  A+ TFK+     S++HP EV+  V  L +RL VV G+D LS E Q NAT+ F
Sbjct: 881  NVIRILDTAKTTFKIKDGARSNLHPAEVIPQVQDLLDRLIVVRGDDDLSREGQHNATILF 940

Query: 1028 NILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQ 1087
               LRS  A KR++ E  L + AF+ V+GEIESRF ++ V PGEM+G +AAQSIGEPATQ
Sbjct: 941  KAQLRSRLAFKRLVMECSLNKLAFQHVLGEIESRFCRAAVNPGEMVGVLAAQSIGEPATQ 1000

Query: 1088 MT 1089
            MT
Sbjct: 1001 MT 1002


>gi|83320478|gb|ABC02866.1| RNA polymerase II largest subunit, partial [Neocallimastix sp. GE13]
          Length = 813

 Score = 1066 bits (2756), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/816 (62%), Positives = 639/816 (78%), Gaps = 8/816 (0%)

Query: 269  IIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSR 328
            IIR N NLR  E +G+PAH+++E+  LLQFH+AT+ DN+  G P+A Q+SGRP+K+I +R
Sbjct: 3    IIRANINLRNHEADGSPAHVVNEYEALLQFHVATFMDNDTAGIPQAMQKSGRPLKAIRAR 62

Query: 329  LKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERL 388
            LK KEGRIRGNLMGKRVDFSARTVIT DP I+IDQ+GVP SIA NLT+PETVTP+NI+ L
Sbjct: 63   LKGKEGRIRGNLMGKRVDFSARTVITGDPNISIDQVGVPRSIARNLTFPETVTPFNIDEL 122

Query: 389  KELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFN 448
            ++LV  GP+  PG   AKY+ +D+G R+DL++  +S   HL++GYKVERH+NDGD V+FN
Sbjct: 123  QQLVNNGPNEHPG---AKYVFKDNGDRIDLKF-ARSGSVHLQVGYKVERHINDGDLVIFN 178

Query: 449  RQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELM 508
            RQPSLHKMS+MGH+IK+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS+ET+AEV E+ 
Sbjct: 179  RQPSLHKMSMMGHKIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSYETKAEVQEIC 238

Query: 509  MVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTI 568
            MVPK IVSPQ+N+PVMGIVQDTL G RK TKRD F+ +D  MNI+MW  D+DG VP P I
Sbjct: 239  MVPKQIVSPQANKPVMGIVQDTLCGIRKFTKRDCFLTRDFVMNIIMWVPDWDGVVPPPCI 298

Query: 569  LKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKK 628
            LKP PLWTGKQ+ +LIIPK IN+    + H DN+   ++ GDT V IE GELL+G LCKK
Sbjct: 299  LKPIPLWTGKQIMSLIIPK-INIVGYHSTHPDNEDTDISPGDTKVLIENGELLAGILCKK 357

Query: 629  TLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETIN 688
            T+G+S   +IHV+  E GP+ A+ F   TQ +VNYWLLQN FSIGIGDTIAD  TMETIN
Sbjct: 358  TVGSSQNGIIHVVMNEYGPETAKLFFNGTQTVVNYWLLQNGFSIGIGDTIADRNTMETIN 417

Query: 689  DTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSES 748
              I+ AK  V  +I QAQ   LE +PG T+ E+FE+ VN+ LN ARD AG+SAQKSL E 
Sbjct: 418  KAIASAKQAVNEVILQAQQCKLECQPGLTIRETFESLVNRHLNKARDSAGASAQKSLREY 477

Query: 749  NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 808
            NN+K MV +GSKGSFINISQMTACVGQQNVEGKRIPFGF  RTLPHFTKDD  PESRGFV
Sbjct: 478  NNVKQMVVSGSKGSFINISQMTACVGQQNVEGKRIPFGFKYRTLPHFTKDDQSPESRGFV 537

Query: 809  ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 868
            ENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRL+K++ED+ +KYDGTVRNS 
Sbjct: 538  ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSLEDVSIKYDGTVRNSF 597

Query: 869  GDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWN--PNYMLQEYIDD 926
            G +IQF YGEDGMD   +E Q L+S++M  ++F+K ++ ++ ++++   P  +    ++D
Sbjct: 598  GHIIQFCYGEDGMDGTSVEKQQLESIRMSDAKFEKFYKIDLTDKDFGLKPKTLQFSILED 657

Query: 927  L-KTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPR 985
            L +    +++  D E + L+ DR      I  +GDSSWPLPVN++RLIWNAQ  F ++ R
Sbjct: 658  LAQQSNVVQEKLDEEYKSLQEDRKLFREFIFKNGDSSWPLPVNVRRLIWNAQNIFSINKR 717

Query: 986  RPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHR 1045
            + SD+HP+ + E  D+L +RL VV G+D LS EAQ N+T+ F  L+++  ++KR+L+ + 
Sbjct: 718  KESDLHPLYICEKRDELLKRLVVVRGDDKLSKEAQINSTINFFALIKTCLSTKRILEYYH 777

Query: 1046 LTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            L + AF+W+IGEIE RF Q+LV PGEM+G +AAQSI
Sbjct: 778  LNKAAFDWLIGEIEVRFNQALVQPGEMVGTIAAQSI 813


>gi|123979340|gb|ABM81495.1| RNA polymerase II largest subunit [Tornabea scutellifera]
          Length = 993

 Score = 1065 bits (2754), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1014 (53%), Positives = 714/1014 (70%), Gaps = 40/1014 (3%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+  +  ++ ++C NC KI  DE +  FK AL++R+PK R   I   CK K  CE     
Sbjct: 1    FITKIKKLLETICHNCGKIKVDESNQAFKDALRMRDPKKRFDAIWRLCKPKMVCEMSVSQ 60

Query: 154  DVPGQDGEEPLKKN---KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
            D   +D +EP+K +    GGCG  QP++  +G+K++  +K Q+   + + Q PE    K+
Sbjct: 61   D---EDNKEPVKDSGSGHGGCGNVQPEVRRDGLKLMGTWKPQKGDEESEGQQPE----KK 113

Query: 211  TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------- 259
             +T +  L V + +S +D + LGL+  YARP+WMI+ VLP+PPPPVRPS           
Sbjct: 114  PITPKMALAVFQAMSTDDIKKLGLSNDYARPEWMIITVLPVPPPPVRPSIKVDGGDGPTG 173

Query: 260  -DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRS 318
             DDLT++L  IIR N N+RR E  G PAHII EF  LLQFH+ATY  N+  GQP+A Q+S
Sbjct: 174  EDDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETLLQFHVATYMSNDTAGQPQALQKS 233

Query: 319  GRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPE 378
            GRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPE
Sbjct: 234  GRPVKAIRARLKGKEGRVRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPE 293

Query: 379  TVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERH 438
            TVTPYNI +L +LV+ GP+  PG   A+Y+IRD G+R+DLR+ +++ D  L+ G+KVERH
Sbjct: 294  TVTPYNIHKLHQLVKNGPNEHPG---ARYVIRDGGERIDLRFHRRAGDLVLQYGWKVERH 350

Query: 439  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
            + DGDF++FNRQPSLHK S+MGHR+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS 
Sbjct: 351  IVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 410

Query: 499  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
            ETRAEV +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+  +  MNIL+W  +
Sbjct: 411  ETRAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLNHEQVMNILLWVPE 470

Query: 559  FDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKG 618
            +DG +PQP +LKP+PLWTGKQ+ +L+IP  +NL + + +    D+GI  AG        G
Sbjct: 471  WDGIIPQPAVLKPKPLWTGKQIVSLVIPSGLNLVKGSDYAPLKDEGIFVAG--------G 522

Query: 619  ELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            EL+ G L KK +G + G +IH+++ E G +AA  F    Q +VNYWLL N FSIGIGDTI
Sbjct: 523  ELMFGLLNKKVVGAAMGGIIHIVYNEKGSEAAMNFFNGAQAVVNYWLLHNGFSIGIGDTI 582

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
             D +T+  I + ++  K  V  + + A +  L+  PG  + E+FE++V++ LN ARD+AG
Sbjct: 583  PDRETIRLIEEAVNTQKQEVTEITQMATESRLDTLPGMNVRETFESRVSKALNKARDDAG 642

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
            +  + SL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKD
Sbjct: 643  TVTEDSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKD 702

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
            DY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M 
Sbjct: 703  DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMA 762

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN----W 914
            KYDGT+RNSLGD++QF+YGEDG+D   IE Q LD +   +++F+K FR ++ + N     
Sbjct: 763  KYDGTIRNSLGDIVQFVYGEDGLDGAHIEPQKLDIIVCSEAKFEKDFRVDLMDNNPRTTI 822

Query: 915  NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIW 974
            +P+++ Q  +  + T ++++   D E ++L+A R +   +          LP+N+ R++ 
Sbjct: 823  SPDFLEQATV--IATDQKVQKALDEEYEQLKAAR-EFLRKNKKDASEDLQLPLNIPRILE 879

Query: 975  NAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRST 1034
             A  TF +     S++ P+EV+  V+ L +RL VV G+DPLS E Q NATL F  LLRS 
Sbjct: 880  TAMTTFNIKNGSRSNLDPVEVITDVNNLLDRLVVVRGDDPLSREGQHNATLLFKALLRSR 939

Query: 1035 FASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQM 1088
             A KR++ E+ L + AF+ V+GEIESRF ++ V PGEM+G +AAQSIGEPATQM
Sbjct: 940  LAFKRLVMEYSLNKLAFQHVLGEIESRFARAAVNPGEMVGVLAAQSIGEPATQM 993


>gi|113707382|gb|ABI36590.1| RNA polymerase II largest subunit [Teloschistes exilis]
          Length = 1003

 Score = 1063 bits (2750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1025 (52%), Positives = 716/1025 (69%), Gaps = 44/1025 (4%)

Query: 86   AKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKT 145
            A  +FHIGF++ +  ++ +VC NC KIL DE +  F +AL+ R+PK R   I   CK K 
Sbjct: 2    AAXVFHIGFLRHIKKLLETVCHNCGKILVDESNPAFAEALRHRDPKRRFDAIWRLCKPKL 61

Query: 146  KCEG-----GDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
             CE       D++D  G    EP + + GGCG  QP++  E + +   +KAQ+  ++ + 
Sbjct: 62   VCETTPPQTDDQLDRSG----EP-RHDHGGCGNVQPEIRKEALALNGTWKAQKGDDEHEG 116

Query: 201  QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP----- 255
            Q  E    K+ +T +  L V + IS +D + +GL+  YARP+WMI+ VLP+PPPP     
Sbjct: 117  QQAE----KKPITPQMALSVFRNISTDDIKKMGLSNDYARPEWMIITVLPVPPPPVRPSI 172

Query: 256  -------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
                   +R  DDLT++L  IIR N N++R + +G+P H+  EF  LLQFH+ATY DN +
Sbjct: 173  SMDGANGLRGEDDLTYKLGDIIRANGNVKRCDLDGSPQHLTQEFENLLQFHVATYMDNNI 232

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
             G  +A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP 
Sbjct: 233  AGLGQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPR 292

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIA  LTYPETVTPYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  
Sbjct: 293  SIAKTLTYPETVTPYNIQKLHQLVKNGPNEHPG---AKYVIRDSGERIDLRHHKRAGEIS 349

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            L+ G+KVERH+ DGDF++FNRQPS HK S+MGHR+++MPYSTFRLNLSVTSPYNADFDGD
Sbjct: 350  LQYGWKVERHIVDGDFIIFNRQPSXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGD 409

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMN+HVPQS ETRAEV +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++ 
Sbjct: 410  EMNLHVPQSEETRAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLNQEQ 469

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
             MNIL+W  ++DG +PQP +LKP PLWTGKQ+ +L+IP  +NL + + +    D GI   
Sbjct: 470  VMNILLWVPEWDGIIPQPAVLKPTPLWTGKQIVSLVIPAGLNLVKGSDYAPLKDDGIF-- 527

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
                  +  GEL+ G L KK +G + G +IH+++ E GP+AA  F    Q +VNYWLL N
Sbjct: 528  ------VSSGELMFGLLNKKVVGAAMGGIIHIVYNEKGPEAAMNFFNGAQAVVNYWLLHN 581

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDTI D +T+  I + ++  K  V  + + A +  L+  PG  + E+FE++V++
Sbjct: 582  GFSIGIGDTIPDRETIRLIEEAVNAQKREVAEITQMATESRLDTLPGMNVRETFESRVSK 641

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
             LN ARD+AG+  + SL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF 
Sbjct: 642  ALNKARDDAGTVTEDSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFK 701

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRR
Sbjct: 702  YRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRR 761

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKA+ED+M KYDGT+RNSLGD++QF+YGEDG+D   IE Q LD +    ++F+K FR +
Sbjct: 762  LVKALEDVMAKYDGTIRNSLGDIVQFVYGEDGLDGAHIEPQRLDIIVCSDAKFEKDFRID 821

Query: 909  MDEENWNPNYMLQ-EYIDDLKTIK---ELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            + ++  NP   +  E+++    I    +++ V D E ++L+A R +   +          
Sbjct: 822  LMDD--NPRTTVSAEFLEQATEIAADGKVQQVLDEEYEQLKAAR-EFLRKNKKDDSQDLQ 878

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LP+N+ R++  A  TF +     S++HP+EV+  V++L +RL VV G+DPLS E Q NAT
Sbjct: 879  LPLNIPRILETAMTTFNIKNGSRSNLHPVEVITEVNQLLDRLVVVRGDDPLSKEGQHNAT 938

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEP 1084
            L F  LLRS  A KR++ E+ L + AF+ V+GEIESRF ++ V PGEM+G +AAQSIGEP
Sbjct: 939  LLFKALLRSRLAFKRLVMEYSLNKLAFQHVLGEIESRFSRAAVNPGEMVGVLAAQSIGEP 998

Query: 1085 ATQMT 1089
            ATQMT
Sbjct: 999  ATQMT 1003


>gi|1945435|gb|AAC49712.1| RNA polymerase II largest subunit [Spirogyra sp.]
          Length = 613

 Score = 1063 bits (2748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/613 (80%), Positives = 554/613 (90%)

Query: 481  YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
            YNADFDGDEMNMHV Q+FETRAE +ELMMVPKC+VSPQSNRPVMGIVQDTLLGCRK+TKR
Sbjct: 1    YNADFDGDEMNMHVCQTFETRAETMELMMVPKCVVSPQSNRPVMGIVQDTLLGCRKVTKR 60

Query: 541  DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD 600
            DTFIEKDVFMNILMWWEDF+GK+P PTILKPRPLWTGKQVF+LIIP+ +NL R +AWH D
Sbjct: 61   DTFIEKDVFMNILMWWEDFEGKIPSPTILKPRPLWTGKQVFSLIIPRAVNLERYSAWHPD 120

Query: 601  NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
            +++G  + GDT VR+EKGELL+G LCKK+LGTS GSL+H+IWEEVGPDAARKFLGHTQWL
Sbjct: 121  SERGDFSPGDTQVRVEKGELLAGILCKKSLGTSGGSLVHIIWEEVGPDAARKFLGHTQWL 180

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            VNYWLLQ  FSIGIGDTIADA TM+TIN+TI+KAK  VK+LI+ A +K LE +PGRT+ME
Sbjct: 181  VNYWLLQQGFSIGIGDTIADASTMDTINETIAKAKTEVKDLIEAACEKQLEAQPGRTLME 240

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            SFEN+VNQVLN ARD+AG +AQ SLSESNN+KAMVTAGSKGSFINISQM ACVGQQNVEG
Sbjct: 241  SFENRVNQVLNKARDDAGRAAQSSLSESNNVKAMVTAGSKGSFINISQMIACVGQQNVEG 300

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS
Sbjct: 301  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 360

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRLVKAMED+MVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQ+L S+KM KS 
Sbjct: 361  ETGYIQRRLVKAMEDVMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQSLPSMKMNKST 420

Query: 901  FDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGD 960
            FD  +R+E+D+E+W+P+YM  ++  D K + E R V DAEV +LE DR  L  EIA +GD
Sbjct: 421  FDATYRYEIDQEDWSPDYMDPQFAKDAKIVAEFRQVMDAEVLQLEQDRRTLGLEIAPTGD 480

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
            SSWPLPVN+KRLIWNAQK FK+D R+PSDM+PM+VV+ +DKLQERLKVV G+D +S EAQ
Sbjct: 481  SSWPLPVNIKRLIWNAQKIFKIDLRKPSDMNPMDVVDGMDKLQERLKVVVGDDHISREAQ 540

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            KNATLFFN LLRST +SK+VLK++RL  EAF+WVIGEIE+RFLQS VAPGEMIGCVAAQS
Sbjct: 541  KNATLFFNCLLRSTMSSKQVLKDYRLNMEAFQWVIGEIEARFLQSQVAPGEMIGCVAAQS 600

Query: 1081 IGEPATQMTLNTF 1093
            IGEPATQMTLNTF
Sbjct: 601  IGEPATQMTLNTF 613


>gi|113957512|gb|ABI49119.1| RNA polymerase II largest subunit [Coccocarpia erythroxyli]
          Length = 997

 Score = 1062 bits (2746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/1017 (53%), Positives = 713/1017 (70%), Gaps = 40/1017 (3%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GFM  +  ++  VC NC KIL DE +  F  AL+ R+PK R   I   CK K  CE    
Sbjct: 1    GFMTKIKKLLEIVCHNCGKILVDESNPAFADALRYRDPKRRFDAIWRLCKPKRICETLRP 60

Query: 153  IDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTL 212
            ++    + ++  + + GGCG  QP++   G+K+   +KAQ+   + + Q PE    K+ +
Sbjct: 61   LEDDNAEKQKEPRHDHGGCGNLQPEIRRAGLKLNGTWKAQKGDEEIEGQQPE----KKPI 116

Query: 213  TAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP------------VRPSD 260
            T +  L V + IS ++ + +GL+  YARP+WMI+ VLP+PPPP            +R  D
Sbjct: 117  TPQMALNVFRHISSDEIRKIGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGMRGED 176

Query: 261  DLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGR 320
            DLT++L  IIR N N+RR E  G+PAH++SEF QLLQFH+ATY DN++ GQP+A Q+SGR
Sbjct: 177  DLTYKLGDIIRANGNVRRCETEGSPAHVVSEFEQLLQFHVATYMDNDIAGQPQALQKSGR 236

Query: 321  PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETV 380
            P+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPETV
Sbjct: 237  PVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETV 296

Query: 381  TPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLN 440
            TPYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KVERH+ 
Sbjct: 297  TPYNIQKLHQLVKNGPNDHPG---AKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIV 353

Query: 441  DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFET 500
            DGD+++FNRQPS HK S+MGHR+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS ET
Sbjct: 354  DGDYIIFNRQPSXHKESMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEET 413

Query: 501  RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFD 560
            RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ K+  MNIL+W  D+D
Sbjct: 414  RAEINQLCMVPLNIVSPQKNGPLMGIVQDTLCGIYKICRRDVFLTKEQIMNILLWVPDWD 473

Query: 561  GKVPQPTILKPRPLWTGKQVFNLIIPKQINLF--RTAAWHADNDKGILTAGDTLVRIEKG 618
            G +PQP ILKPRP WTGKQ+ +L+IP  +N      A W   ND G++ +G        G
Sbjct: 474  GVLPQPAILKPRPRWTGKQIISLVIPTGLNFTMPSGAGWSPLNDNGLMVSG--------G 525

Query: 619  ELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            EL+ G   KK++G +  +++H+I+ E GP+AA  F    Q +VNYWLL N FSIGIGDTI
Sbjct: 526  ELMYGLFTKKSVGVTPSAVVHIIFNEKGPEAAMSFFNGAQTVVNYWLLHNGFSIGIGDTI 585

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
             D  T++ I + ++K K  V ++ + A D  LEP PG  + E+FE+KV + LN ARD+AG
Sbjct: 586  PDRNTIQQIENAVNKQKEEVASITRIATDNELEPLPGMNVRETFESKVARALNKARDDAG 645

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
            +  ++SL + NN   M  +GSKGS INISQMTA       EGKRIPFGF  RTLPHFTKD
Sbjct: 646  TVTEESLKDINNATQMARSGSKGSTINISQMTAXXXXXXXEGKRIPFGFKYRTLPHFTKD 705

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
            DY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M 
Sbjct: 706  DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMA 765

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD---EENW 914
            KYDGTVRNSLGD++QF+YGEDG+D+V +E Q +D +     +F++ FR + MD   E + 
Sbjct: 766  KYDGTVRNSLGDIVQFVYGEDGIDAVHVEEQRVDIILSSDEQFERKFRVDLMDPRPEISI 825

Query: 915  NPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRL 972
            +  Y+ Q  E + DL    E++   D E ++L+A R  L  ++   G     LP+N+ R+
Sbjct: 826  SSEYLEQANEIVGDL----EVQAYLDEEYEQLQAARDML-RKVKQDGTDLLQLPINIVRI 880

Query: 973  IWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 1032
            +  A+ TFK+     S++HP EV+  V +L +RL VV G+D LS E+Q NATL F   LR
Sbjct: 881  LDTAKTTFKIKNGTRSNLHPAEVIPQVRELLDRLIVVRGDDDLSKESQHNATLLFKAQLR 940

Query: 1033 STFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1089
            S  A KR++ E+ L R AF+ V+GEIESRF ++ V PGEM+G +AAQSIG+PATQMT
Sbjct: 941  SRLAFKRLVMENSLNRLAFQHVLGEIESRFCRATVNPGEMVGVLAAQSIGDPATQMT 997


>gi|120561197|gb|ABM26984.1| RNA polymerase II largest subunit, partial [Sclerotinia sclerotiorum]
          Length = 1011

 Score = 1060 bits (2742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/1026 (52%), Positives = 711/1026 (69%), Gaps = 36/1026 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELAKP++H GF+K    ++  VC NC K+  D  +  +K A+ IR+PK R + I   C
Sbjct: 1    HIELAKPVYHPGFLKKTKKLLEMVCHNCGKVKLDRSNPAYKAAVSIRDPKRRFEAIWKLC 60

Query: 142  KNKTKCEGGDEIDVP--GQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
            K K  C+   +++      D +E  KK+ GGCG  QP++    + +   +KA   K++D 
Sbjct: 61   KTKMICDSDVQMNEEEFNADPKEAAKKSHGGCGNIQPEVRQTALALWGTWKA--PKDEDG 118

Query: 200  EQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV----------- 248
            E + +P +R+  +T +  L V + +S  + Q +GLN  YARP+WMI+ V           
Sbjct: 119  EAV-QPDKRQ--ITPDMALNVFRSMSTAEIQDVGLNADYARPEWMIITVLPVPPPPVRPS 175

Query: 249  --LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
              +      +R  DDLT++L  IIR N N+R+ ++ G+P HI+ +F  LLQ+H+ATY DN
Sbjct: 176  ISMDGTGQGMRGEDDLTYKLGDIIRANGNVRQAQQEGSPQHILQDFETLLQYHVATYMDN 235

Query: 307  ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
            ++ GQP A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GV
Sbjct: 236  DIAGQPPALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGV 295

Query: 367  PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
            P SIA  LTYPETVTP NI++L +LV+ GP   PG   AKY+IR DG R+DLR+ K++  
Sbjct: 296  PRSIARILTYPETVTPLNIDKLHQLVKNGPDEHPG---AKYVIRSDGTRIDLRHHKRAGA 352

Query: 427  HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 486
              LE G+KVERH+ DGDF++FNRQPSLHK S+MGHR+++MPYSTFRLNLSVTSPYNADFD
Sbjct: 353  ISLEYGWKVERHIVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFD 412

Query: 487  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
            GDEMN+HVPQ++ETRAEV+ L MVP  IVSPQ N P+MGIVQDTL G  KI +RD FI K
Sbjct: 413  GDEMNLHVPQTYETRAEVMNLCMVPLNIVSPQRNGPLMGIVQDTLAGVYKICRRDVFITK 472

Query: 547  DVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGIL 606
            +  MNIL+W  D+DG +PQP ILKPRP WTGKQ+ +LIIPK +N     +++A  DK  L
Sbjct: 473  EHLMNILLWVPDWDGVIPQPAILKPRPRWTGKQIVSLIIPKIVN-----SYNASKDKEHL 527

Query: 607  TA--GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
             A   D    I++G+L+ G + KK +G S   ++H+++ E GPDAA  F    Q ++NYW
Sbjct: 528  HAPLNDDGCLIQEGQLMYGLMAKKNVGASGNGIVHIVFNEQGPDAAMAFFNGCQRVINYW 587

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTI + +T+E I   I+K K  V  L+++A    LE  PG  + E+FE+
Sbjct: 588  LLHNGFSIGIGDTIPNKETIEQIEKAIAKQKAEVTELVEKATSNELESLPGMNVRETFES 647

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
            +V++ LN AR+ AG+  +  L + NN   M  +GSKGS INISQM+A VGQQ+VEGKRIP
Sbjct: 648  QVSKALNEARNTAGTKTEDGLLDINNAVQMARSGSKGSTINISQMSALVGQQSVEGKRIP 707

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 708  FGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 767

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D V  E+Q +D + +    F+  
Sbjct: 768  IQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVIFENQKMDHINISNKAFNDL 827

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIAT----SGD 960
            F+ E+  E  + + +  E+ ++L    E + + DAE   LE DR  L   + +      D
Sbjct: 828  FKLEVMSERISTDVL--EHANELYGDLETQQLLDAEFAALEEDRRILRDFVHSRTKEKDD 885

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
              + LP+N+ R+I +A++ FK D  + SD+HP +V+  V +L +R+ +V G D LSVEAQ
Sbjct: 886  DHFQLPLNIIRIIDSAKRLFKTDDGKRSDLHPRDVIPRVQQLLDRMIIVRGTDELSVEAQ 945

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
             NAT+F     RS  A KR+     L + AFE ++GE+E+RF ++LV PGEM+G +AAQS
Sbjct: 946  YNATIFIKAQFRSRLAYKRIALGMHLNKLAFEHILGELETRFTRALVNPGEMVGVLAAQS 1005

Query: 1081 IGEPAT 1086
            IGEPAT
Sbjct: 1006 IGEPAT 1011


>gi|110669627|gb|ABG81908.1| RNA polymerase II largest subunit [Astrothelium cinnamomeum]
          Length = 1021

 Score = 1060 bits (2742), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/1037 (53%), Positives = 715/1037 (68%), Gaps = 38/1037 (3%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P+FH+GF+  +  ++   C +C KIL DE +  F +A+K R+ K R 
Sbjct: 1    ECPGHFGHIELAVPVFHVGFIGKIKKLLEICCHHCGKILMDETNPAFIEAMKTRDRKRRF 60

Query: 135  KKILDACKNKTKCEGGDEIDVPGQDG--EEPLK--KNKGGCGAQQPKLTIEGMKMIAEYK 190
             KI   CK K KCE  D  D P  D   ++PLK    +GGCG   P +  +G+K++  +K
Sbjct: 61   DKIWTLCKTKKKCER-DPQDDPNADENPDQPLKPSSTRGGCGNVAPGIRKDGLKLLGTWK 119

Query: 191  AQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP 250
              +     +E+  E    K+ +T  +VL     IS+ED + +GL   YA+P WMIL VLP
Sbjct: 120  YDKS----EEEDEERRIEKKYITPHQVLEAFNHISNEDLEKVGLGSDYAKPTWMILTVLP 175

Query: 251  IPPPP-------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
            +PPPP             +R  DDLT++L+ IIR N N+++ +  G+P         LLQ
Sbjct: 176  VPPPPVRPSISVDGTGQGMRGEDDLTYKLSDIIRANANVKKCKGEGSPRSHCRRVETLLQ 235

Query: 298  FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
            +H+ATY DN++ GQP+A Q+SGRPIKSI SRLK KEGR+RGNLMGKRVDFSARTVIT DP
Sbjct: 236  YHVATYMDNDIAGQPQAMQKSGRPIKSIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDP 295

Query: 358  TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
             +++DQ+GVP +I   LTYPETVTPYNI +L ELV  GP+  PG   AKY+IRD G+R+D
Sbjct: 296  NLDLDQVGVPRTICKTLTYPETVTPYNISKLHELVRNGPNEHPG---AKYVIRDTGERID 352

Query: 418  LRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 477
            LR+ K++S+  L+ G+KVERHL DGDF++FNRQPSLHK S+MGHR+K+MPYSTFRLNLSV
Sbjct: 353  LRHHKRASEITLQYGWKVERHLMDGDFIIFNRQPSLHKESMMGHRVKVMPYSTFRLNLSV 412

Query: 478  TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
            TSPYNADFDGDEMN+HVPQS ETRAEV+ L MVP  IVSPQ N+P+MGI+QDTL G  KI
Sbjct: 413  TSPYNADFDGDEMNLHVPQSEETRAEVMNLCMVPLNIVSPQGNKPLMGIIQDTLCGIYKI 472

Query: 538  TKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAW 597
             ++D FI K+  MN L+W  D+DG VP PTI++PRP+WTG+Q+ ++ +P  +NLFR A+ 
Sbjct: 473  CRKDVFITKEQVMNTLLWVPDWDGVVPPPTIVRPRPMWTGEQIISMALPAGLNLFRKAST 532

Query: 598  HAD-NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGH 656
            H   +D+G+   G        GEL+ G   KK +G     +IH I+ E G +AA  F   
Sbjct: 533  HNPPSDQGLFVKG--------GELMYGLFNKKIVGAGPQGVIHSIYNEKGWEAAVAFFNA 584

Query: 657  TQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR 716
             Q +V +WLL N FS+GIGDTI D  T E I   I++ K  V+    QAQ+  LE  PG 
Sbjct: 585  AQRIVCFWLLHNGFSVGIGDTIPDKDTTEQIETVINEQKAEVEKPTAQAQENKLEALPGM 644

Query: 717  TMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 776
            ++ E+FENKV+  LN AR+ AG   + SL + NN   M  +GSKGS INISQMTA VGQQ
Sbjct: 645  SIRETFENKVSNALNEARNRAGKVTEDSLKDLNNAIQMARSGSKGSAINISQMTAAVGQQ 704

Query: 777  NVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 836
            +VEGKRIPFGF  R+LPHFTKDDY PE+RGFVENS LRGLTP EFFFHAM GREGLIDTA
Sbjct: 705  SVEGKRIPFGFKYRSLPHFTKDDYSPEARGFVENSCLRGLTPTEFFFHAMAGREGLIDTA 764

Query: 837  VKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKM 896
            VKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D+V IE Q +D +  
Sbjct: 765  VKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDAVHIEQQHIDHITS 824

Query: 897  KKSEFDKAFRFEMDEENW--NPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLA 952
            K  +F   FR ++ + N+  +P+ + Q  E   D++  + L D ++   Q  E  R  + 
Sbjct: 825  KTEKFKNDFRMDVMDPNYSLSPDILEQAHEIAGDVEVQRHLDDEWELLQQDREFMRTWMK 884

Query: 953  TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGE 1012
             +     +    LP+N+ R+I  A+  F+V     SD+HP EV+  V  L +RL V+ GE
Sbjct: 885  GKAKNEIEDQLQLPLNILRIIETAKHKFRVKDGSRSDLHPAEVIPQVRDLLDRLIVIRGE 944

Query: 1013 DPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEM 1072
            D LS EA  +AT+ F +LLR+  A KR++ +H L + AFE V+G+IE+RF +SLV+PGEM
Sbjct: 945  DRLSQEADHSATILFKVLLRARLAFKRLVAQHSLNKLAFENVLGDIEARFSRSLVSPGEM 1004

Query: 1073 IGCVAAQSIGEPATQMT 1089
            +G +AAQSIGEPATQMT
Sbjct: 1005 VGVLAAQSIGEPATQMT 1021


>gi|57472114|gb|AAW51135.1| RNA polymerase II largest subunit [Calostoma cinnabarinum]
          Length = 994

 Score = 1060 bits (2741), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/1015 (53%), Positives = 698/1015 (68%), Gaps = 44/1015 (4%)

Query: 90   FHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK-IRNPKNRLKKILDACKNKTKCE 148
            FH GF+  V  I+  +C NC K+ AD  D  F   ++ +R+ K R+  +   CK+K  CE
Sbjct: 1    FHPGFIVKVKKILECICVNCGKLKADISDPNFADKIRHVRDRKARMAVVWSHCKSKMICE 60

Query: 149  GGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
              +  +   +   E  KK  GGCG QQP +  EG+K+  +YK   +  DD E +      
Sbjct: 61   TDEPREEGAEGEPEEPKKGHGGCGHQQPLIRKEGLKLFVQYK---RPKDDDEDIKSLQPD 117

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-----------LPIPPPPVR 257
            K+  T   V    K++SD D  LLGL+ +YARP+WMI+ V           + +    +R
Sbjct: 118  KRLFTPSEVYTTFKKMSDSDLHLLGLSDEYARPEWMIITVLPVPPPPVRPSIAVDGGAMR 177

Query: 258  PSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQR 317
              DDLT++L  II+ + N+RR E+ GAPAH+I+EF QLLQFH ATY DN++ G P+A  +
Sbjct: 178  SEDDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQLLQFHXATYMDNDIAGIPQALAK 237

Query: 318  SGRPIKSICSR-----LKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIAL 372
                I+S C       LK KEGR+RGNLMGKRVDFSARTVIT DP + +D++GVP S+A+
Sbjct: 238  ----IRSSCESYPVRGLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPISVAM 293

Query: 373  NLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELG 432
            NLTYPE VTP+NI +L+ELV  GP+  PG   A+Y++RD G+R+DLRY  K +D  L+ G
Sbjct: 294  NLTYPERVTPFNIHKLQELVRNGPNEYPG---ARYVVRDTGERIDLRY-NKRTDAFLQHG 349

Query: 433  YKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNM 492
            + VERHL DGD+VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVT PYNADFDGDEMNM
Sbjct: 350  WIVERHLRDGDYVLFNRQPSLHKMSMMSHRVKLMPYSTFRLNLSVTPPYNADFDGDEMNM 409

Query: 493  HVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNI 552
            H+PQS ETRAE+ ++  VP  I+SPQ+N+PVMGIVQDTL G RK T RDTF++ +   NI
Sbjct: 410  HIPQSEETRAELSQIAWVPLQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQVQNI 469

Query: 553  LMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAG 609
            L+W  D+DG VP P I+KP+PLW+GKQ+ +++IP+ IN+       + N   D G+L   
Sbjct: 470  LLWVPDWDGHVPTPAIIKPKPLWSGKQILSMVIPRGINIHXAPDPKSSNPVFDDGML--- 526

Query: 610  DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
                 I+ GE+L G + KKT+G + G LIHV++ E GPDA R+     Q +VNYWL  N 
Sbjct: 527  -----IDNGEILFGIMDKKTVGATQGGLIHVVFREKGPDATRQVFTGIQIVVNYWLYHNG 581

Query: 670  FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
            FSI IGDTIA  K M  I D I++ K  V  +I  A    L   PG T+ ESFEN V + 
Sbjct: 582  FSIXIGDTIAGPKVMSFITDKIAEKKQKVSEIIDDAYHDRLRAMPGMTIRESFENMVERE 641

Query: 730  LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
            LN ARDE+G  AQK+L E NN+K MVTAGSKGS+INISQM+ CVGQQ+VEGKRIPFGF  
Sbjct: 642  LNRARDESGQYAQKNLKEDNNVKQMVTAGSKGSYINISQMSVCVGQQSVEGKRIPFGFRH 701

Query: 790  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 849
            RTLPHF KDD+ PE+RGFVENSYLRGLTPQEFFFHAMGG EGLIDTAVKT+ETGYIQRRL
Sbjct: 702  RTLPHFNKDDFSPEARGFVENSYLRGLTPQEFFFHAMGGXEGLIDTAVKTAETGYIQRRL 761

Query: 850  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM 909
            VKA+ED+MV YDGTVRNSLGD+IQF+YGEDGMD  +IE Q +D+  +   EF+  +R ++
Sbjct: 762  VKALEDVMVHYDGTVRNSLGDLIQFIYGEDGMDGAFIERQKIDTFALSDKEFEHKYRVDV 821

Query: 910  -DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP--LP 966
             D++      +LQ  +DD     EL+   D E  +L  DR +L   I   GD   P  +P
Sbjct: 822  TDKQGGFLPGVLQIGVDDSSV--ELQAKLDEEYSRLMQDRRELRGFIFPRGDPLTPHYMP 879

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            VNL R+I NA + F +D R+ SD+ P  +V+AV +L +RL  + G+D LS EAQ NA+L 
Sbjct: 880  VNLHRIIQNALQIFHIDRRKASDLEPAYIVDAVHQLTQRLLAILGDDELSREAQANASLT 939

Query: 1027 FNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            F + +R+T A++RVL+E  L REAFEWV+GEIE++F QSLV PGEM G ++AQSI
Sbjct: 940  FRMHVRATLATRRVLEEFHLNREAFEWVLGEIEAKFNQSLVNPGEMCGTLSAQSI 994


>gi|110669618|gb|ABG81904.1| RNA polymerase II largest subunit [Simonyella variegata]
          Length = 1013

 Score = 1060 bits (2740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 532/1029 (51%), Positives = 706/1029 (68%), Gaps = 30/1029 (2%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+ELA P+FHIGF+     ++ +VC NCSK+L DE +  F  AL+IR+PK R 
Sbjct: 1    ECPGHFGHIELAAPVFHIGFINKTKKLLETVCHNCSKVLLDESNQAFAAALRIRDPKRRF 60

Query: 135  KKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRK 194
              +   CK++  C      +    D +E +K   GGCG + P++  EG+K+   +K    
Sbjct: 61   DTVHKLCKSRPICVPDPSPEEKEADPKEAMKPTHGGCGNRHPQIRKEGLKIQGTWKV--P 118

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            K +D+E+     E K+ +T +  L + + IS ED + LGL+  YARP+WMI+ VLP+PPP
Sbjct: 119  KGEDEEERG-ATEEKRMITPQMALDIFRNISQEDIRKLGLSNDYARPEWMIITVLPVPPP 177

Query: 255  PVRPS-------------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIA 301
             VRPS             DDLT++L  I+R N N+RR E  G+P H+ +EF  LLQFH+A
Sbjct: 178  QVRPSVVVSNSGAGPRGEDDLTYKLGDIVRANMNVRRCESEGSPQHVKTEFESLLQFHVA 237

Query: 302  TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 361
            TY DN + GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++
Sbjct: 238  TYMDNNIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSL 297

Query: 362  DQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR-DDGQRLDLRY 420
            D++GVP +I   LTY ETV P NI  L  LVE GP+  PG   A Y+I  D  +  DLR 
Sbjct: 298  DEVGVPVTICKTLTYVETVNPRNIAYLSRLVETGPNLHPG---ANYVINMDRTKTWDLRR 354

Query: 421  LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP 480
            +K      LE G++VERH++DGD+++FNRQPSLHK S+MGHR+K+MP+STFRLNLSVT P
Sbjct: 355  VKNPP--RLEYGWQVERHIDDGDYIIFNRQPSLHKESMMGHRVKVMPWSTFRLNLSVTGP 412

Query: 481  YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
            YNADFDGDEMN+HVPQ+  TRAEV EL MVP  IVSPQ N P+MGIVQDTL G  KI +R
Sbjct: 413  YNADFDGDEMNLHVPQTEATRAEVKELCMVPHNIVSPQRNGPLMGIVQDTLCGIYKICRR 472

Query: 541  DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD 600
            D F+ ++  MN+LMW  ++DG +PQP +LKP+P+WTGKQ+ +L +P  +NL R +     
Sbjct: 473  DVFLTQEQAMNVLMWVPEWDGIMPQPALLKPKPMWTGKQIISLALPAGLNLLRGS----- 527

Query: 601  NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
             ++G+    D  + +  GEL+ G   KK++G S G +IHVI+ E GPDAA +F    Q +
Sbjct: 528  -EEGMSPVNDDGLFVNNGELMFGLFSKKSVGASGGGIIHVIFNEKGPDAAVRFFNGAQQI 586

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            VNYWLLQN FSIGIGDT  D  T++ I   I + K  V+ +  +A +  LEP PG  + E
Sbjct: 587  VNYWLLQNGFSIGIGDTTPDPTTVQQIQGAIDEQKAEVEAITTEATNNELEPLPGMNIRE 646

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FE+KV++ LN+ARD AGS  +KSL + NN   M  AGSKGS INISQMTA VGQQ+VEG
Sbjct: 647  TFESKVSKALNSARDNAGSKTEKSLKDINNAVQMARAGSKGSTINISQMTAVVGQQSVEG 706

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIPFGF  RTLPHFTKDDY PE+          GLTP EFFFHAM GREGLIDTAVKT+
Sbjct: 707  KRIPFGFKYRTLPHFTKDDYSPEAPWLCGKFLSXGLTPTEFFFHAMAGREGLIDTAVKTA 766

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRLVKA+ED+M KYD TVRNSLGD++QF+YGEDG+D+V+IE Q LD +    ++
Sbjct: 767  ETGYIQRRLVKALEDVMAKYDTTVRNSLGDIVQFVYGEDGLDAVYIEQQRLDFIACSNAQ 826

Query: 901  FDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGD 960
            FDK F+ ++ + +  P     E   ++    +++ +FD E   L+ DR  L     +  +
Sbjct: 827  FDKKFKVDVMDTS-APLAESLELSSEIAGNVDIQTLFDEEYDALKKDRAFLRQN-RSDDN 884

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
                LP+N++R+I  A+ TF++     SD+ P   +  V +L ERL +V G+DPLS+EAQ
Sbjct: 885  EMMQLPLNVQRMIETAKTTFRIKDGAKSDLDPSYAIPQVQQLLERLVIVRGDDPLSLEAQ 944

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            ++ATL     LRS  A KRV++E+ L + AF+ ++G++E+RF ++ V+ GEM+G +AAQS
Sbjct: 945  ESATLLIKAHLRSRLAFKRVVEEYSLNKLAFDNILGDVENRFTRAAVSAGEMVGVLAAQS 1004

Query: 1081 IGEPATQMT 1089
            IGEPATQMT
Sbjct: 1005 IGEPATQMT 1013


>gi|13183799|gb|AAK15346.1|AF338253_1 RNA polymerase II largest subunit [Leptomonas seymouri]
          Length = 1657

 Score = 1057 bits (2734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1503 (40%), Positives = 873/1503 (58%), Gaps = 136/1503 (9%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
             P S   + KV  VQF +    +I+  +  +IEH ++ E G+P  GG++D R+GT D   
Sbjct: 7    LPPSQMPLQKVHDVQFEVFKERQIKAYATCRIEHAKSYEHGQPVRGGINDLRMGTTDFDY 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
             CETC     ECPGHFG++ELA+P+F+I     VL  ++ VC  C  +L D +D    + 
Sbjct: 67   SCETCGLKHPECPGHFGYIELAEPIFNINVFDVVLIALKCVCKYCGALLMDTNDPTEMKK 126

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            +      NRL+ +   C +  K       D+ G +G+            +QP++     +
Sbjct: 127  ITHVQGLNRLRLVAKLCGSVCK----RSKDIQGCEGK-----------GRQPRIG----R 167

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
             +  Y   + K   +EQ            A+    VL R+SD D  ++G +P++  P  +
Sbjct: 168  FLGIYPGLQIKVTQEEQ-------DYVWHADNARQVLDRVSDSDATIMGFDPRFCHPRDL 220

Query: 245  ILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
            IL V+PIPPP VRP+         D+LTHQ+  I++    LR+ + +G  A +    A L
Sbjct: 221  ILTVVPIPPPQVRPAVAFGSAKSDDELTHQIMSIVKREHQLRKDKESGVKAAVDRSRA-L 279

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQ H+AT+F+N       A     + +KS+  RLK K GR+RGNLMGKRVDFSARTVIT 
Sbjct: 280  LQEHVATFFNNASTFYKPAKVGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITG 339

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP I++D++GVP+SIA+ LT+PE V   N +RL E V+   +P      A YI+R +G  
Sbjct: 340  DPNIDVDEVGVPFSIAMTLTFPERVNVINKKRLTEFVQRSTYPS-----ANYIMRPNGNV 394

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
              L  +K  S  HL++G  VERH+ DGD VLFNRQP+LH+MS+MGHR++++ Y+TFRLNL
Sbjct: 395  TKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNL 454

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
            S T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGIVQD+LLG  
Sbjct: 455  SCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSY 514

Query: 536  KITKRDTFIEKDVFMNILMW---WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
            ++T +DTF++K    ++ +W   WE     +P P ILKPRPLWTGKQ+F+LI+P ++N  
Sbjct: 515  RLTDKDTFVDKYFIQSVALWLDLWE-----LPIPAILKPRPLWTGKQIFSLILP-EVN-- 566

Query: 593  RTAAWHAD-----NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
              A+ +       NDK I         I++G LL G + K  +G + GSLIHVI+ E G 
Sbjct: 567  HPASPYGKPPFPHNDKKI---------IQRGLLLVGAITKGVVGAAPGSLIHVIFNERGS 617

Query: 648  DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
            D   KF+   Q +  Y+    AFS+G+ DT+ADA T++ +N+ + K + +V+ +   A +
Sbjct: 618  DEVAKFINGVQRITTYFNYCFAFSVGVQDTVADASTLKEMNNVLHKTRQSVEKIGAAANN 677

Query: 708  KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
              L  + G ++++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKGS +NI 
Sbjct: 678  GKLTRKAGMSLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNIC 737

Query: 768  QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
            Q+   VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EF+FH M 
Sbjct: 738  QIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMATRGYVEGLQPHEFYFHTMA 797

Query: 828  GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
            GREGLIDTAVKTS+TGY+QR+L+KA+ED+   YDGTVRN+  ++IQ  YGEDG+D   IE
Sbjct: 798  GREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANQELIQLAYGEDGLDGARIE 857

Query: 888  -SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYID---------DLKTIKELRDVF 937
             +Q      M  +E    +R+E +EE      M   Y+D         D +++ +L++ F
Sbjct: 858  GNQAFPIPHMANNEMIDKYRYEYNEEGSFSENMGGSYMDPFVRDSLLRDPQSVSKLQEEF 917

Query: 938  DAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVE 997
            D  V+  + D  +L  ++         LPVN+ RLI NA  T      + S+++P+ V++
Sbjct: 918  DQLVK--DRDMSRLIIDMEEKNKLKMNLPVNVARLIQNATTTMG-QAHQVSNLNPITVIQ 974

Query: 998  AVDKLQERL-KVVPGE---------DPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLT 1047
             V   ++ L ++ P           + LS +  K A   F+I LR    SKRVLKE++L 
Sbjct: 975  RVRDCRKTLVQLFPSYHKDYSGRFLNVLSQQRVKRALTLFDIHLRQILGSKRVLKEYKLN 1034

Query: 1048 REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGV 1107
             +AFE+++ EI +++ QSL+ PGE+IG +AAQS GEPATQMTLNTFH AG+S+KNVTLGV
Sbjct: 1035 DKAFEYLLKEIRTKYQQSLITPGEIIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGV 1094

Query: 1108 PRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDP 1167
            PRL E++NV+K  +  S++V L       +++A+  Q  +EY TL ++T        P P
Sbjct: 1095 PRLLELLNVSKNQRNASVAVCLTREYQQ-RQKAQEAQQYIEYCTLANITTTV-----PRP 1148

Query: 1168 MGTIIEEDVEFVKSYYEMPDED--IAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQ 1225
            + T++ EDV  ++    + +ED  +   + SP++ R+ LN E+  +K+L+M  V   I Q
Sbjct: 1149 LNTVVVEDVNILEWEQAVMNEDEGLDAAQPSPFIARLILNTELFNNKQLNMKDVKSAIQQ 1208

Query: 1226 EFDDDLTCIFNDDNADKLILRIR----IMNDEAPKGELNDESAE--DDVFLKKI------ 1273
              D  L      +N    ++R+R       D  P  EL    A+    V L  I      
Sbjct: 1209 MDDSYLMQANLKNNIRHRVVRLRPRKCAGADSVP--ELTKAVAQLLQSVHLLGIPGIKKT 1266

Query: 1274 -------------------ESNMLTE---MALRGVNLLAVMCH--EDVDARRTTSNHLIE 1309
                               ES+ + +    AL+ + +  V  H    VD  +T+SN + E
Sbjct: 1267 LLKEGTTFNVDPATGGITKESSWMVDTEGTALQRIFVGVVNQHGVNIVDFAKTSSNKIPE 1326

Query: 1310 IIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDT 1369
            I+ VLGIEA R  LL EL       G  +NYRH  IL DTM  RG+LMA++R GINR++T
Sbjct: 1327 IVTVLGIEAARPKLLFELCQAYLAYGLNINYRHYTILVDTMCQRGYLMAVSRTGINRSET 1386

Query: 1370 -GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNA 1428
             GP+MRCSFEETV +L+ AA F E D +RGV+ N+++G  A IGTG   L L+     N 
Sbjct: 1387 SGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSANLVMGNQARIGTGLFDLMLDMGNCSNV 1446

Query: 1429 IEL 1431
            + L
Sbjct: 1447 VPL 1449


>gi|113957418|gb|ABI49110.1| RNA polymerase II largest subunit [Letrouitia domingensis]
          Length = 998

 Score = 1057 bits (2734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 548/1021 (53%), Positives = 713/1021 (69%), Gaps = 46/1021 (4%)

Query: 92   IGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGD 151
            IGF+  +  I+ +VC NC KIL DE +  F  A +IR+PK R   +   CK KT CE   
Sbjct: 1    IGFLGKIKKILETVCHNCGKILVDESNPAFVDAQRIRDPKRRFDAVWRLCKPKTLCE--- 57

Query: 152  EIDVPGQDGEEPLK-----KNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPV 206
               +P  DG+ P K      + GGCG  QP++  E +K+   +KA++  ++++EQ   P 
Sbjct: 58   -TSMPA-DGDNPEKLKEPRHDHGGCGNIQPEVRREALKLTGTWKARKGDDENEEQ---PA 112

Query: 207  ERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP----------- 255
            E+K  +T +  L V + IS +D + +GL+  YARP+WMI+ VLP+PPPP           
Sbjct: 113  EKK-PITPQMALNVFRHISTQDIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGAN 171

Query: 256  -VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRA 314
             +R  DDLT++L  IIR N N+RR E +GAPAHI+SEF  LLQFH+ATY DN++ G P+A
Sbjct: 172  GMRGEDDLTYKLGDIIRANGNVRRCENDGAPAHIVSEFENLLQFHVATYMDNDIAGLPQA 231

Query: 315  TQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNL 374
             Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  L
Sbjct: 232  LQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 291

Query: 375  TYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK 434
            TYPETVTPYNI +L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+K
Sbjct: 292  TYPETVTPYNIHKLHQLVKNGPNEHPG---AKYVIRDSGERIDLRHHKRAGEISLQYGWK 348

Query: 435  VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHV 494
            VERH+ DGDF++FN     HK S+MGHR+++MPYSTFRLNLSVTSPYNADFDGDEMN+HV
Sbjct: 349  VERHIVDGDFMIFNGXXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 408

Query: 495  PQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM 554
            PQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++  MNIL+
Sbjct: 409  PQSEETRAEISQLCMVPLNIVSPQRNWPIMGIVQDTLCGIYKICRRDVFLSEEQVMNILL 468

Query: 555  WWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR--TAAWHADNDKGILTAGDTL 612
            W  D+DG +PQP ILKPRP WTGKQ+ +L++P  +N  +   + +   ND G+L  G   
Sbjct: 469  WVPDWDGVIPQPAILKPRPRWTGKQIISLVLPPTLNYLQLDKSGFSPINDAGMLVDG--- 525

Query: 613  VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSI 672
                 GE++ G   K+ +G S   +IH+I+ E GP+AA  F    Q +VNYWLL N FSI
Sbjct: 526  -----GEVIFGLFRKQAVGASKQGIIHIIFNEKGPEAALNFFNGAQTVVNYWLLHNGFSI 580

Query: 673  GIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNT 732
            GIGDTI D KT++ I + +S+ K  V  + ++A    LE  PG ++ E+FE+KV   LN 
Sbjct: 581  GIGDTIPDRKTIQGIENAVSEQKKEVIEITRKATADELESLPGMSIRETFESKVQAALNQ 640

Query: 733  ARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTL 792
            AR+ AG+  Q+SL + NN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  RTL
Sbjct: 641  ARENAGTKTQESLKDLNNAVQMALSGSKGSTINISQMTAIVGQQAVEGKRIPFGFKYRTL 700

Query: 793  PHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKA 852
            PHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA
Sbjct: 701  PHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 760

Query: 853  MEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD- 910
            +ED+M KYDGTVRNSLGDV+QFLYGEDG+D+V IESQ +D +     +F++  R + MD 
Sbjct: 761  LEDVMAKYDGTVRNSLGDVVQFLYGEDGLDAVHIESQAVDIVTCSHDQFERKCRVDVMDP 820

Query: 911  --EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
              E +  P ++  E   ++    E++   D E ++L+  R     E  +  +S + LP+N
Sbjct: 821  RPETSIPPEFL--ESSTEIAGELEVQKHLDEEYEQLQKAR-DFLREKKSEDNSMYYLPLN 877

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            + R++ NA+  FK+     S++HP EV+  V+ L +RL VV G DPLS EAQ NATL F 
Sbjct: 878  IVRILENAKAAFKIKKNGRSNLHPAEVIPQVNGLLDRLVVVRGHDPLSAEAQHNATLLFK 937

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQM 1088
              LRS  A KR++ E+ L + AF+ V+GEIES+F ++ V PGEM+G +AAQSIGEPATQM
Sbjct: 938  AQLRSRLAFKRLVLENSLNKLAFQHVLGEIESKFCRAAVNPGEMVGVLAAQSIGEPATQM 997

Query: 1089 T 1089
            T
Sbjct: 998  T 998


>gi|119643888|gb|ABL85593.1| RNA polymerase II largest subunit [Protopannaria pezizoides]
          Length = 1016

 Score = 1056 bits (2732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/987 (54%), Positives = 703/987 (71%), Gaps = 36/987 (3%)

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            F  AL+ R+PK R   I   CK K  CE    I+    +  +  K + GGCG  QP++  
Sbjct: 48   FADALRYRDPKRRFDAIWRLCKPKMTCETAAAIEDDNMEKSKEPKHDHGGCGNIQPEVRR 107

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EG+++   +KAQ+   +++ Q PE    K+ +T +  L + + IS+++ + +GL+  YAR
Sbjct: 108  EGLRLNGTWKAQKGDEENEGQQPE----KKPITPQMALNIFRHISNDEIKKMGLSNDYAR 163

Query: 241  PDWMILQVLPIPPPP------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            P+WMI+ VLP+PPPP            +R  DDLT++L  IIR N N+RR E  G+PAH+
Sbjct: 164  PEWMIITVLPVPPPPVRPSISVDGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHV 223

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ++EF QLLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFS
Sbjct: 224  VTEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFS 283

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVIT DP +++D++GVP SIA  LTYPETVTPYNI++L +LV+ GP+  PG   AKY+
Sbjct: 284  ARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG---AKYV 340

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IRD G+R+DLR+ K++ +  L+ G+KVERH+ DGD+++FNRQPSLHK S+MGHR+++MPY
Sbjct: 341  IRDSGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMPY 400

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQ
Sbjct: 401  STFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQ 460

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL G  K+ +RD F+ K+  MNIL+W  D+DG +PQP ILKPRP WTGKQ+ +L++P  
Sbjct: 461  DTLCGIYKMCRRDVFLSKEQVMNILLWVPDWDGILPQPAILKPRPKWTGKQIISLVVPAG 520

Query: 589  INLFR--TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            +NL R  +  +   ND G+L +G        G+L+ G L KK++G ++  +IHVI+ E G
Sbjct: 521  LNLTRPSSEGFSPVNDDGLLVSG--------GKLMYGLLNKKSVGATSSGIIHVIFNEKG 572

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
             +AA  F    Q +VNYWLL N FSIGIGDTI D  T++ I D ++K K +V  + + A 
Sbjct: 573  SEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDKNTIQQIEDAVNKQKEDVAEITRSAT 632

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LEP PG  + E+FE+KV++ LN ARD+AG+  +KSL + NN   M  +GSKGS INI
Sbjct: 633  ENELEPLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMALSGSKGSTINI 692

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PES+GFVENSYLRGLTP EFFFHA 
Sbjct: 693  SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESKGFVENSYLRGLTPTEFFFHAT 752

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
             GREGLIDTAVKT+ETGYIQR LVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D V I
Sbjct: 753  AGREGLIDTAVKTAETGYIQRCLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHI 812

Query: 887  ESQTLDSLKMKKSEFDKAFRFE-MD---EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQ 942
            ESQ +D +     +F++ +R + MD   E   +P ++ Q +  DL    E++  FD E +
Sbjct: 813  ESQRVDIITCSDEQFERKYRVDVMDPRPEATISPEFLEQAH--DLTGDSEVQAHFDEEYE 870

Query: 943  KLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            +L+A R  L        D    LP+N+ R++  A+ TFK+     S++HP EV+  V  L
Sbjct: 871  QLQAARDFLRKNKQDDND-QLQLPINVIRILDTAKTTFKIKDGTRSNLHPTEVIPQVRDL 929

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
             ERL VV G+D LS EAQ NAT+ F   LRS  A KR++ E  L + AF+ V+GEIESRF
Sbjct: 930  LERLIVVRGDDDLSREAQHNATMLFKAQLRSRLAFKRLVMEASLNKLAFQHVLGEIESRF 989

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMT 1089
             ++ V PGEM+G +AAQSIGEPATQMT
Sbjct: 990  CRAAVNPGEMVGVLAAQSIGEPATQMT 1016


>gi|113957476|gb|ABI49117.1| RNA polymerase II largest subunit [Heterodermia vulgaris]
          Length = 996

 Score = 1056 bits (2731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1017 (52%), Positives = 715/1017 (70%), Gaps = 40/1017 (3%)

Query: 92   IGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGD 151
            +GF+  +  ++ +VC NC KI  DE    FK AL++R+PK R   I   CK KT CE   
Sbjct: 1    VGFITKIKKLLETVCHNCGKIKVDESTPAFKDALRVRDPKRRFDSIWRLCKPKTICEMSA 60

Query: 152  EIDVPGQDGEEPLKK---NKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
              D    D ++P+K+     GGCG  QP++  +G+K++  +K Q+  ++++ Q PE    
Sbjct: 61   PQD---DDNKDPIKEPVAGHGGCGNIQPEVRRDGLKLMGTWKPQKGDDENEGQQPE---- 113

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS--------- 259
            K+ ++ +  L V +++S ED + LGL+  YARP+WMI+ VLP+PPPPVRPS         
Sbjct: 114  KKPISPKMALEVFRQMSTEDNKKLGLSNDYARPEWMIITVLPVPPPPVRPSIKVDGGDGP 173

Query: 260  ---DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQ 316
               DDLT++L  IIR N N+RR E  G PAHII EF  LLQFH+ATY  N+  GQP+A Q
Sbjct: 174  TGEDDLTYKLGDIIRANGNVRRGETEGTPAHIIEEFETLLQFHVATYMSNDTAGQPQALQ 233

Query: 317  RSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTY 376
            +SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTY
Sbjct: 234  KSGRPVKAIRARLKGKEGRVRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTY 293

Query: 377  PETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVE 436
            PETVTPYNI++L +LV+ GP+  PG   A+Y+IRD G+R+DLR+ +++ D  L+ G+KVE
Sbjct: 294  PETVTPYNIQKLHQLVKNGPNEHPG---ARYVIRDTGERIDLRFHRRAGDLVLQYGWKVE 350

Query: 437  RHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 496
            RH+ DGD ++FNRQP  HK S+MGHR+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ
Sbjct: 351  RHIVDGDXIIFNRQPYXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 410

Query: 497  SFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW 556
            S ETRAEV +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++  MNIL+W 
Sbjct: 411  SEETRAEVNQLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLNQEQVMNILLWV 470

Query: 557  EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIE 616
             ++DG +PQP +LKP PLWTGKQ+ +L+IP  +NL + + +    D GI         + 
Sbjct: 471  PEWDGIIPQPAVLKPTPLWTGKQIVSLVIPAGLNLVKGSDYAPLKDDGIF--------VS 522

Query: 617  KGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD 676
             GEL+ G L KK +G + G +IH+++ E GP+AA  F    Q +VNYWLL N FSIGIGD
Sbjct: 523  SGELMFGLLNKKVVGAAMGGIIHIVYNEKGPEAAMNFFNGAQAVVNYWLLHNGFSIGIGD 582

Query: 677  TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDE 736
            TI D +T+  I + ++  K  V  + + A +  L+  PG  + E+FE++V++ LN ARD+
Sbjct: 583  TIPDRETIRLIEEAVNAQKREVAEITQMATESRLDTLPGMNVRETFESRVSKALNKARDD 642

Query: 737  AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFT 796
            AG+  + SL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFT
Sbjct: 643  AGTVTEDSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFT 702

Query: 797  KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDI 856
            KDDY PESRGFVENSYLRGLTP EFFFHAM GREG IDTAVKT+ETGYIQRRLVKA+ED+
Sbjct: 703  KDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGPIDTAVKTAETGYIQRRLVKALEDV 762

Query: 857  MVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNP 916
            M KYDGT+RNSLGD++QF+YGEDG+D   IE Q LD +    ++F+K FR ++ ++  NP
Sbjct: 763  MAKYDGTIRNSLGDIVQFVYGEDGLDGAHIEPQRLDIIVCSDAKFEKDFRIDLMDD--NP 820

Query: 917  NYMLQ-EYIDDLKTIK---ELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRL 972
               +  E+++    I    +++ V D E ++L+A R +   +          LP+N+ R+
Sbjct: 821  RTTVSAEFLEQATEIAADGKVQQVLDEEYEQLKAAR-EFLRKNKKDDSQDLQLPLNIPRI 879

Query: 973  IWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 1032
            +  A  TF +     S++HP+EV+  V++L +RL VV G+DPLS E Q NATL F  LLR
Sbjct: 880  LETAMTTFNIKNGSRSNLHPVEVITEVNQLLDRLVVVRGDDPLSKEGQHNATLLFKALLR 939

Query: 1033 STFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1089
            S  A KR++ E+ L + AF+ V+GEIESRF ++ V PGEM+G +AAQSIGEPATQMT
Sbjct: 940  SRLAFKRLVMEYSLNKLAFQHVLGEIESRFSRAAVNPGEMVGVLAAQSIGEPATQMT 996


>gi|123979328|gb|ABM81489.1| RNA polymerase II largest subunit [Ophioparma lapponica]
          Length = 981

 Score = 1054 bits (2725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 534/998 (53%), Positives = 707/998 (70%), Gaps = 33/998 (3%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEG---G 150
            FM  +  ++ +V  NC KIL DE +  F  AL+ R+PK R   I   CK K  CE     
Sbjct: 1    FMTKIKKLLETVRHNCGKILVDESNPAFADALRYRDPKRRFDAIWRLCKPKLVCETMAVQ 60

Query: 151  DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
            DE ++  ++ +EP K + GGCG  QP++  EG+K+   +KAQ+   +++ Q PE    K+
Sbjct: 61   DEDNI--KESKEP-KHDHGGCGNIQPEVRREGLKLTGTWKAQKGDEENEGQQPE----KK 113

Query: 211  TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP-------------VR 257
             +T +  L + + IS E+ + +GL+  YARP+WMI+ VLP+PPPP             +R
Sbjct: 114  PITPQMALNIFRHISTEEIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGTGQGMR 173

Query: 258  PSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQR 317
              DDLT++L  IIR N N+RR E  G+PAH++SEF  LLQFH+ATY DN++ GQP+A Q+
Sbjct: 174  GEDDLTYKLGDIIRANGNVRRCETEGSPAHVVSEFESLLQFHVATYMDNDIAGQPQALQK 233

Query: 318  SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYP 377
            SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYP
Sbjct: 234  SGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYP 293

Query: 378  ETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVER 437
            ETVTPYNI +L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KVER
Sbjct: 294  ETVTPYNIHKLHQLVKTGPNDHPG---AKYVIRDSGERIDLRHHKRAGEISLQYGWKVER 350

Query: 438  HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
            H+ DGD+++FNRQPSLHK S+MGHR+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS
Sbjct: 351  HIVDGDYIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 410

Query: 498  FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 557
             ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  K+ +RD F+ K+  MNIL+W  
Sbjct: 411  EETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGVYKMCRRDVFLTKEQAMNILLWVP 470

Query: 558  DFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEK 617
            D+DG +PQP  LKPRP WTGKQ+ +L+IP  +NL R ++      +G+  A D  + +  
Sbjct: 471  DWDGVIPQPATLKPRPKWTGKQIISLVIPAGLNLIRPSS------EGLSPANDDGLFVHG 524

Query: 618  GELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDT 677
            GEL+ G   KK++G S G ++H+++ E GPDAA KF    Q LVNYWLL N FSIGIGDT
Sbjct: 525  GELMYGLFMKKSVGASGGGIVHIVFNEKGPDAAMKFFNGAQTLVNYWLLHNGFSIGIGDT 584

Query: 678  IADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEA 737
            I D  T++ I + ++  K +V ++ + A + +LE  PG  + E+FE+KV++ LN ARD+A
Sbjct: 585  IPDRNTIQKIENAVNTQKADVADITQSATENTLEALPGMNVRETFESKVSKALNKARDDA 644

Query: 738  GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTK 797
            G++ ++SL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTK
Sbjct: 645  GTATEESLKDLNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTK 704

Query: 798  DDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIM 857
            DDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M
Sbjct: 705  DDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVM 764

Query: 858  VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPN 917
             KYDGTVRNSLGD++QF+YGEDG+D V IE+Q LD +     +F K FR ++ +     +
Sbjct: 765  AKYDGTVRNSLGDIVQFIYGEDGLDGVHIEAQRLDIITCSDEQFGKKFRVDLMDPKMGIS 824

Query: 918  YMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQ 977
              + +  +++    +++   D E ++L+A R  L        +    LP+N+ R+I  A+
Sbjct: 825  PDILDQANEIAGDVKIQTYLDEEWEQLKAARAFLRKN-KQDDNEQLQLPINVLRIIETAK 883

Query: 978  KTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFAS 1037
             TFK+     SD+HP++V+  V  L +RL +V GED LS EAQ NATL F   LRS  A 
Sbjct: 884  TTFKIKDGARSDLHPLDVIPQVSDLLDRLVIVRGEDILSKEAQHNATLLFKAHLRSRLAF 943

Query: 1038 KRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGC 1075
            KRV+ E+ L + AF+ V+GEIESRF ++LV PGEM+G 
Sbjct: 944  KRVVTEYSLNKLAFQNVLGEIESRFSRALVNPGEMVGV 981


>gi|123979330|gb|ABM81490.1| RNA polymerase II largest subunit [Asahinea scholanderi]
          Length = 983

 Score = 1051 bits (2718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/1004 (53%), Positives = 705/1004 (70%), Gaps = 43/1004 (4%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            FM  +  ++ +VC NC KIL DE +  F  A++ R+PK R   +   CK K  CE    +
Sbjct: 1    FMTKIKKLLETVCHNCGKILVDESNPAFADAIRRRDPKKRFDLVWRLCKPKMICETTMAL 60

Query: 154  D--VPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT 211
            D   P    +EP K + GGCG  QP++  EG+++   +KAQ+   +++ Q PE    K+ 
Sbjct: 61   DDDAPSDKTKEP-KHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPE----KKP 115

Query: 212  LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------------RPS 259
            +T +  L + + IS +D + +GL+  YARP+WMI+ VLP+PPPPV            R  
Sbjct: 116  ITPQMALNIFRHISTDDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGE 175

Query: 260  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
            DDLT++L  IIR N N+RR E  G+PAH+++EF QLLQFH+ATY DN++ GQP+A Q+SG
Sbjct: 176  DDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSG 235

Query: 320  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
            RP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPET
Sbjct: 236  RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 295

Query: 380  VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHL 439
            VTPYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KVERH+
Sbjct: 296  VTPYNIQKLHQLVKNGPNEHPG---AKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHI 352

Query: 440  NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 499
             DGD++ FNRQ   HK S+MGHR+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS E
Sbjct: 353  VDGDYIXFNRQXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEE 412

Query: 500  TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 559
            TRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  K+ +RD F+ K+  MNIL+W  D+
Sbjct: 413  TRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDW 472

Query: 560  DGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA--AWHADNDKGILTAGDTLVRIEK 617
            DG +PQP I+KP  +WTGKQ+ +L+IP  +NL R +   +   ND G+L +G        
Sbjct: 473  DGVIPQPAIVKPLAMWTGKQILSLVIPTGLNLLRGSKEGFSPLNDDGLLISG-------- 524

Query: 618  GELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDT 677
            GEL+ G L KK++G S G +IH+++ E GP+AA  F    Q +VNYWLL N FSIGIGDT
Sbjct: 525  GELMYGLLNKKSVGASGGGVIHIVFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDT 584

Query: 678  IADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEA 737
            I D  T++ I   +S  K+ V ++ + A +  LE  PG  + E+FE+KV++ LN ARD+A
Sbjct: 585  IPDRHTIQQIEKAVSTQKDEVTDITRSATENELESLPGMNVRETFESKVSKALNKARDDA 644

Query: 738  GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTK 797
            G+  +KSL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTK
Sbjct: 645  GTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTK 704

Query: 798  DDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIM 857
            DDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M
Sbjct: 705  DDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVM 764

Query: 858  VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD---EEN 913
             KYDGTVRNSLGD++QF+YGEDG+D V IE Q +D +     +F++ FR + MD   E +
Sbjct: 765  AKYDGTVRNSLGDIVQFVYGEDGLDGVHIEQQRVDIIACSTKQFERKFRVDLMDSKPETS 824

Query: 914  WNPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
             +P ++ Q  E + D++T K L    D E ++LE DR +L          +  LP+N+ R
Sbjct: 825  ISPEFLEQANEMVGDVETQKHL----DIEYRQLEKDRAELRKN-RQDDTENLQLPLNVIR 879

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            ++  A+ TFK+     S++HP EV+  V  L +RL VV G D LS EAQ NATL F I L
Sbjct: 880  ILETAKTTFKIKNGARSNLHPAEVIPQVQDLLDRLVVVRGTDKLSEEAQHNATLLFKIQL 939

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGC 1075
            RS  A KR++ E+ L + AF+ V+GEIESRF ++ V PGEM+G 
Sbjct: 940  RSRLAFKRLVMENSLNKLAFQHVLGEIESRFCRAAVNPGEMVGV 983


>gi|120561199|gb|ABM26985.1| RNA polymerase II largest subunit, partial [Trichophyton rubrum]
          Length = 1015

 Score = 1050 bits (2716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/1033 (52%), Positives = 720/1033 (69%), Gaps = 46/1033 (4%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+EL+ P+FHIGF+  +  ++ +VC NC KI A+  D K+  AL+ R+PK R   I    
Sbjct: 1    HIELSTPVFHIGFLTKIKKLLETVCHNCGKIKANASDQKYLDALRFRDPKKRFDAIWRLS 60

Query: 142  KNKTKCEGG--DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKN--D 197
            K+   CE    +E D   ++  +P++ + GGCG  QP++  EG+ ++  +K  + ++  D
Sbjct: 61   KDILICEADPPEEDDPFAKESSKPVQGH-GGCGNVQPQVRKEGITLMGTWKPSKMRDMMD 119

Query: 198  DQE-QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D E Q PE    K+ +T +  L + + IS+ED +L+GL+  YARP+WMI+ VLP+PPPPV
Sbjct: 120  DNEIQQPE----KKQITPQMALTIFRNISEEDVRLMGLSNDYARPEWMIITVLPVPPPPV 175

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT++LA IIR N+N+ R E+ G+P H++ EF  LLQ+H+ATY
Sbjct: 176  RPSVLVGGSGTGQRGEDDLTYKLAEIIRANQNVTRCEQEGSPEHVVREFESLLQYHVATY 235

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ G P+A Q+S RP+K+I  RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 236  MDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 295

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPE VTPYNI RL +LV+ GP   PG   A+Y+IR  G+R+DLR+ K 
Sbjct: 296  VGVPISIAQTLTYPEVVTPYNIHRLGQLVDNGPDVHPG---ARYVIRSSGERIDLRHHKG 352

Query: 424  SSDHH-LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 482
                + L+ G+KVERHL DGDF+LFNRQPSLHK S+M HR+++MPYSTFRLNLSVT+PYN
Sbjct: 353  GGGRNFLQWGWKVERHLMDGDFILFNRQPSLHKESMMSHRVRVMPYSTFRLNLSVTTPYN 412

Query: 483  ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 542
            ADFDGDEMN+HVPQS E RAE+ +L +VP  IVSPQ N P+MGIVQDTL G  KI +RD 
Sbjct: 413  ADFDGDEMNLHVPQSEEARAELNQLCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDV 472

Query: 543  FIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADND 602
            F+ K+  MN+L+W  D+DG +PQP ILKPRP W+GKQ+ ++++P  +NL R      D D
Sbjct: 473  FLTKEQVMNVLLWVPDWDGVLPQPAILKPRPRWSGKQMISMVLPSGLNLLRI-----DKD 527

Query: 603  KGILTA-----GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHT 657
            K  ++       D  V +  GEL+ G   KKT+G S G ++H I+ E GPDAA  F    
Sbjct: 528  KSPISEKFSPLADGGVLVHGGELMYGMFSKKTVGASGGGIVHTIFNEYGPDAAMSFFNGA 587

Query: 658  QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
            Q +VNYWLL N FSIGIGDTI D +T++ I + +   K  V ++   A + +LE  PG  
Sbjct: 588  QAVVNYWLLHNGFSIGIGDTIPDLETIQKIENAVRVRKEEVDSITASATENTLEALPGMN 647

Query: 718  MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
            + E+FE+KV++ LN ARDEAG++ +KSL +SNN   M  +GSKGS INISQMTA VGQQ+
Sbjct: 648  VRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQMTAVVGQQS 707

Query: 778  VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
            VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAV
Sbjct: 708  VEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 767

Query: 838  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
            KT+ETGYIQR+LVKA+E++MVKYDGTVRNSLGD++QFLYGEDG+D   IE+Q +D +K  
Sbjct: 768  KTAETGYIQRKLVKALEEVMVKYDGTVRNSLGDIVQFLYGEDGLDGQCIENQRVDVIKCS 827

Query: 898  KSEFDKAFRFE-MD-EENWNPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLAT 953
              +F   FR + MD E   +P+ + Q  E   D++  K L    D E ++L  DR  L T
Sbjct: 828  DEQFRNRFRVDLMDPERLLSPDILEQATEIAGDIEVQKHL----DEEWEQLLKDRAFLRT 883

Query: 954  EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED 1013
             +    D    LP+N++R++ +A+ TF++     SD+HP EVV  V +L +RL VV G+D
Sbjct: 884  -VVKEDDEMMQLPINIQRILESAKTTFRIRDGTISDLHPAEVVPQVRQLLDRLLVVRGDD 942

Query: 1014 PLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMI 1073
             LS EAQ++ATL F   LRS  A +R++ E+ L + AF+ V+G IESRF ++   PGEM+
Sbjct: 943  ALSREAQESATLLFKAQLRSRLAFRRLVVEYSLNKLAFQHVLGAIESRFGKAAANPGEMV 1002

Query: 1074 GCVAAQSIGEPAT 1086
            G +AAQSIGEPAT
Sbjct: 1003 GVLAAQSIGEPAT 1015


>gi|5263288|gb|AAC47792.2| RNA polymerase II large subunit [Leishmania major]
          Length = 1663

 Score = 1049 bits (2713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/1506 (40%), Positives = 863/1506 (57%), Gaps = 134/1506 (8%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDP-RLGTIDRK 63
             P S   + KV  VQF +    +I+  +   IEH ++      + G  S           
Sbjct: 7    LPPSQMPLQKVHEVQFEVFKEAQIKAYAKCIIEHAKSYASTASRCGAASTTCAWARQTSS 66

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
            + CETC     ECPGHFG++ELA+P+F+I     VL  ++ VC  C  +L D +D    +
Sbjct: 67   IACETCGLRHPECPGHFGYVELAEPIFNINVFDVVLIALKCVCKYCGALLMDTNDPSEMK 126

Query: 124  ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
             +      NRL+ +   C +  K       D+ G +G  P         A +P + I   
Sbjct: 127  KIAHLQGLNRLRMVAKLCGSVCK----RSKDIQGCEGXGP-------PAAHRPFVGI--- 172

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
                 Y   + K   +EQ            AE    VL R+SD D  ++G + ++  P  
Sbjct: 173  -----YPGLQIKVTQEEQ-------DYVWHAENARQVLDRVSDSDALIMGFDRRFCHPRD 220

Query: 244  MILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            + L VLPIPPP VR S         DDLTHQ+  I++ N  LR+ + +G  A +    A 
Sbjct: 221  LDLTVLPIPPPQVRSSIYLGGLMQVDDLTHQIMSIVKRNIQLRKDKESGVKAAVDRSRA- 279

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQ H+AT+F+N       A     + +KS+  RLK K GR+RGNLMGKRVDFSARTVIT
Sbjct: 280  LLQEHVATFFNNASTYYKPAKVGDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVIT 339

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
             DP I++D++GVP+S+A+ LT+PE V   N +RL E V+   +P      A YIIR +G 
Sbjct: 340  GDPNIDVDEVGVPFSVAMTLTFPERVNVINKKRLTEFVQRTTYP-----SANYIIRPNGN 394

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
               L  +K  S  HL++G  VERH+ DGD VLFNRQP+LH+MS+MGHR++++ Y+TFRLN
Sbjct: 395  VTKLALVKDRSAVHLDVGDVVERHVIDGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLN 454

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            LS T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGIVQD++LG 
Sbjct: 455  LSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSVLGS 514

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
             K+T++DTF++K       +W + +  ++P PTILKPRPLWTGKQ+F+LI+P ++N    
Sbjct: 515  YKLTEKDTFLDKYFIAERPLWLDLW--QLPIPTILKPRPLWTGKQIFSLILP-EVN--HP 569

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
            A+ H   DK      D+ + I++G+LL G + K  +G + GSLIHVI+ E G D   KF+
Sbjct: 570  ASPH---DKPPFPHNDSKIMIQRGQLLGGAITKGVVGAAPGSLIHVIFNERGSDEVAKFI 626

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
               Q +  Y+    AFS+G+ DT+ADA T++ +N+ + K + +V+ +   A +  L  + 
Sbjct: 627  NGVQRITTYFNYCFAFSVGVQDTVADATTLKEMNNVLHKTRQSVEKIGAAANNGKLTRKA 686

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G ++++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKGS +NI Q+   VG
Sbjct: 687  GMSLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGSDLNICQIAVFVG 746

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EF+FH M GREGLID
Sbjct: 747  QQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMATRGYVEGLQPHEFYFHTMAGREGLID 806

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE-SQTLDS 893
            TAVKTS+TGY+QR+LVKA+ED+   YDGTVRN+  ++IQ  YGEDG+D   IE +Q    
Sbjct: 807  TAVKTSDTGYLQRKLVKALEDVHASYDGTVRNANQELIQLAYGEDGLDGARIEGNQAFPI 866

Query: 894  LKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRD-----VFDAEVQKLEADR 948
              M  SE    +R+E ++E      M   Y+D       LRD         E ++L  DR
Sbjct: 867  PHMTNSEMADKYRYEYNDEGSFSENMGGHYMDPFVRDSLLRDPQSVLKLQEEFEQLMKDR 926

Query: 949  Y--QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
               +L  ++         LPVN+ RLI NA+ T      + S+++P+ V+  V +LQE L
Sbjct: 927  AMSRLVIDMEDKNKLKMNLPVNVARLIQNARTTMG-KRSQVSNLNPITVINRVRELQEDL 985

Query: 1007 -KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIG 1056
             ++ P           + LS +  + A   F I LR    SKRVLKE++L  +AFE+++ 
Sbjct: 986  VQLFPSYHKDYNGRFVNVLSQQRVERALTLFGIHLRQILGSKRVLKEYKLNDKAFEYLLK 1045

Query: 1057 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1116
            EI +++ QSL+ PGE+IG +AAQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E++NV
Sbjct: 1046 EIRTKYQQSLITPGEIIGAIAAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLNV 1105

Query: 1117 AKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDV 1176
            +K  +  S++V L       + +A+  Q  +EY TL ++T   ++ YDPDP  T++ ED 
Sbjct: 1106 SKNQRNASVAVCLIREYQK-RNKAQEAQQFIEYCTLANITTTVQIIYDPDPRNTVVAEDE 1164

Query: 1177 EFVK-------SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDD 1229
            E ++       +  E PD +  P   SP++ R+ L+ ++  DK+L+M  V   I Q  DD
Sbjct: 1165 EMIRWEQAVMNAEDEEPDAEQPP---SPFIARLILDNDLFNDKRLNMKDVKSAIRQ-VDD 1220

Query: 1230 DLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV--- 1286
                  N +N  + I+R+R      P+       A+    L K  + +L  + LRG+   
Sbjct: 1221 TYMVQANMENDGQRIVRLR------PR---KCTGADSXPALTKAVAQLLQSVHLRGIPGI 1271

Query: 1287 -------------------------------------NLLAVMCHED---VDARRTTSNH 1306
                                                   + V+  E    +D  +T+SN 
Sbjct: 1272 KKTLLKEGNTFRVDPEAGGIKNESSWMVDTEGTALQRIFVGVVNSEGKNIIDFSKTSSNK 1331

Query: 1307 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1366
            + E++ VLGIEA RR +L ELR      G  +NYRH  IL DTM  RG+LMA++R GINR
Sbjct: 1332 IPEVVTVLGIEAARRKMLSELREAYLAYGLNINYRHYTILVDTMCQRGYLMAVSRTGINR 1391

Query: 1367 NDT-GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEML 1425
            ++T GP+MRCSFEETV +L+ AA F E D +RGV+ +++LG  A IGTG   L L+   L
Sbjct: 1392 SETSGPLMRCSFEETVKVLMTAAAFGEKDPVRGVSASLVLGNQARIGTGLFDLLLDMSKL 1451

Query: 1426 KNAIEL 1431
            ++ + L
Sbjct: 1452 QHVVPL 1457


>gi|3063677|gb|AAC14137.1| RNA polymerase II largest subunit [Dictyostelium discoideum]
          Length = 757

 Score = 1048 bits (2711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/770 (65%), Positives = 598/770 (77%), Gaps = 27/770 (3%)

Query: 75  ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
           ECPGHFGH+ELAKP+FHIGF+ TVL I+R VC++CSK+L D ++H F+QALKIRN K+RL
Sbjct: 1   ECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQALKIRNQKHRL 60

Query: 135 KKILDACKNKTKCEGG----DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYK 190
             ++D CKNK  C  G    +E D+   D E       GGCG   PK+T E +K+I E+K
Sbjct: 61  NAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVKHGGCGNVLPKITKEDLKIIVEFK 120

Query: 191 AQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP 250
                    +     +E+K  L+AERVL +LKRI DED + +G+NP +AR DWMI  VLP
Sbjct: 121 ---------DVTDGSIEKKSVLSAERVLNILKRIKDEDSRAMGINPDWARADWMIATVLP 171

Query: 251 ----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHI 300
                     +     R  DDLTH+LA I++ N  L+RQE+NGAPAHII+E  Q LQFH+
Sbjct: 172 VPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAHIIAEAIQFLQFHV 231

Query: 301 ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTIN 360
           ATY DNE+PG P+A QRSGRP+KSI  RLK KEGRIRGNLMGKRVDFSARTVIT DP ++
Sbjct: 232 ATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLS 291

Query: 361 IDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRY 420
           IDQ+GVP SIALNLTYPETVTP+NI++++EL+  GP   PG   AKYIIR+DG R DLR+
Sbjct: 292 IDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPG---AKYIIREDGTRFDLRF 348

Query: 421 LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP 480
           +KK SD HLE GYKVERH+NDGD V+FNRQPSLHKMS+MGHRIK+MPYSTFRLNLSVTSP
Sbjct: 349 VKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSP 408

Query: 481 YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
           YNADFDGDEMN+HVPQ+ ETRAEV+E+MMVP+ IVSPQSNRPVMGIVQDTLLG R  TKR
Sbjct: 409 YNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQDTLLGSRLFTKR 468

Query: 541 DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD 600
           D F+EKD+ MNILMW   +DGKVP P ILKP+ LWTGKQ+F+LIIP  INL R  + H D
Sbjct: 469 DCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP-DINLIRFTSTHND 527

Query: 601 NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
                 +AGDT V IE+ ELL+G LCK++LG + GS+IHV+  E G D  R F+  TQ +
Sbjct: 528 KKPNECSAGDTRVIIERSELLAGILCKRSLGAANGSIIHVVMNEHGHDTCRLFIDQTQTV 587

Query: 661 VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
           VN+WL+   F++GIGDTIAD+ TM  +  TIS AKN VK LI +AQ+K  E +PG++++E
Sbjct: 588 VNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNKQFECQPGKSVIE 647

Query: 721 SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
           +FE KVNQVLN ARD AGSSAQ SLSE NNLKAMVTAGSKGSFINISQM ACVGQQNVEG
Sbjct: 648 TFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQMMACVGQQNVEG 707

Query: 781 KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
           KRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 708 KRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 757


>gi|123979332|gb|ABM81491.1| RNA polymerase II largest subunit [Masonhalea richardsonii]
          Length = 993

 Score = 1048 bits (2709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/1014 (53%), Positives = 707/1014 (69%), Gaps = 54/1014 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            FM  +  ++ +VC NC KI+ DE +  F  A++ R+PK R   +   CK K  CE    +
Sbjct: 1    FMTKIKKLLETVCHNCGKIVVDESNPAFADAIRRRDPKKRFDLVWRLCKPKMICETTMAL 60

Query: 154  D--VPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT 211
            D   P    +EP K + GGCG  QP++  EG+++   +KAQ+   +++ Q PE    K+ 
Sbjct: 61   DDDAPSDKAKEP-KHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPE----KKP 115

Query: 212  LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------------RPS 259
            +T +  L + + IS +D + +GL+  YARP+WMI+ VLP+PPPPV            R  
Sbjct: 116  ITPQMALNIFRHISADDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGE 175

Query: 260  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
            DDLT++L  IIR N N+RR E  G+PAH+++EF QLLQFH+ATY DN++ GQP+A Q+SG
Sbjct: 176  DDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSG 235

Query: 320  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
            RP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPET
Sbjct: 236  RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 295

Query: 380  VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHL 439
            VTPYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KVERH+
Sbjct: 296  VTPYNIQKLHQLVKNGPNEHPG---AKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHI 352

Query: 440  NDGDFVLFNRQPSLHKMSIMGH-----------RIKIMPYSTFRLNLSVTSPYNADFDGD 488
             DGD+++FNRQPSLHK S+MGH           R+++MPYSTFRLNLSVTSPYNADFDGD
Sbjct: 353  VDGDYIIFNRQPSLHKESMMGHKGXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGD 412

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  K+ +RD F+ K+ 
Sbjct: 413  EMNLHVPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQ 472

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA--AWHADNDKGIL 606
             MNIL+W  D+DG +PQP I+KP  +WTGKQ+ +L+IP  +NL R +   +   ND G+L
Sbjct: 473  VMNILLWVPDWDGVIPQPAIVKPLAMWTGKQILSLVIPTGLNLLRGSEEGFSPLNDDGLL 532

Query: 607  TAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 666
             +G        GEL+ G L KKT+G S G +IH+++ E GP+AA  F    Q +VNYWLL
Sbjct: 533  ISG--------GELMYGLLNKKTVGASGGGVIHIVFNEKGPEAAMTFFNGAQTVVNYWLL 584

Query: 667  QNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKV 726
             N FSIGIGDTI D  T++ I   ++  K+ V  + K A +  LE  PG  + E+FE+KV
Sbjct: 585  HNGFSIGIGDTIPDRHTIQQIEKAVNLQKDEVAKITKSATENELESLPGMNVRETFESKV 644

Query: 727  NQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 786
            ++ LN ARD+AG++ +KSL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFG
Sbjct: 645  SKALNKARDDAGTATEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFG 704

Query: 787  FVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 846
            F  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQ
Sbjct: 705  FKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 764

Query: 847  RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFR 906
            RRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D V IE Q +D +     +F++ FR
Sbjct: 765  RRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEQQRVDIVACSTKQFERKFR 824

Query: 907  FE-MD---EENWNPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGD 960
             + MD   E + +P ++ Q  E I D++T K L    D E ++LE DR +L         
Sbjct: 825  VDLMDSKPETSISPEFLEQANEMIGDVETQKHL----DDEYRQLEKDRAELRKN-RQDDT 879

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
             +  LP+N+ R++  A+ TFK+     S++HP EV+  V  L +RL VV G D LS EAQ
Sbjct: 880  ENLQLPLNVIRILDTAKTTFKIKNGARSNLHPAEVIPQVQDLLDRLVVVRGNDKLSEEAQ 939

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIG 1074
             NATL F I LRS  A KR++ E+ L   AF+ V+GEIESRF ++ V PGEM G
Sbjct: 940  HNATLLFKIQLRSRLAFKRLVMENSLNXLAFQHVLGEIESRFCRAAVNPGEMEG 993


>gi|397135938|gb|AFO11464.1| RNA polymerase I, partial [Candida tepae]
          Length = 872

 Score = 1047 bits (2708), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 524/885 (59%), Positives = 660/885 (74%), Gaps = 26/885 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN ++   PE    K+ LT   +L V K IS ED   +GL+  YARP+WMI+ VLP+PPP
Sbjct: 2    KNSEEGDQPE----KRILTPSEILNVFKHISKEDVTRMGLSEDYARPEWMIITVLPVPPP 57

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT++LA I++ N N++R E++GAPAH+I+EF  LLQ+H+ATY 
Sbjct: 58   PVRPSIAINDTARGEDDLTYKLADILKANGNVQRCEQDGAPAHVINEFEALLQYHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPE VTPYNI RL +LV  GP+  PG   AKY+IRD G+R+DLRY K++
Sbjct: 178  GVPRSIARTLTYPEIVTPYNIHRLTQLVRNGPNEHPG---AKYVIRDTGERIDLRYHKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERH++DGD VLFNRQPSLHKMS+M HR+++MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHIDDGDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ +L MVP  I+SPQSN+PVMGIVQDTL G RK+TKRDTF+
Sbjct: 295  FDGDEMNLHVPQSEETRAELSQLCMVPLQIISPQSNKPVMGIVQDTLCGIRKLTKRDTFV 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MNIL W  D+DG VPQP ILKP+PLWTGKQ+ +L IPK I + R      D+   
Sbjct: 355  EFDQVMNILFWIPDWDGVVPQPAILKPKPLWTGKQMVSLCIPKGIFMQRF-----DDQNP 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            I +  D  + I KGE++ G + KKT+G + G LIH I  E GP     F G+ Q ++NYW
Sbjct: 410  ITSPKDNGMLIAKGEIIYGVVDKKTVGATAGGLIHTIMREKGPQICCNFFGNLQKVINYW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIADA TM+ I +TI++AKN V+ +I +AQ   L PEPG T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADAATMKDITNTIAEAKNKVQEIIFEAQMNKLAPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ SL E NN+K MV AGSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  NVSRVLNQARDTAGRSAEMSLKELNNVKQMVIAGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DR+LPHFTKDD+ PES+GF+ENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFQDRSLPHFTKDDHSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+ED+MV+YDGT RNSLGDVIQF+YGEDG+D   +E QT+D++      F+K 
Sbjct: 650  IQRRLVKALEDVMVQYDGTTRNSLGDVIQFVYGEDGLDGTQVEKQTVDTIPGSDEAFEKR 709

Query: 905  FRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSS 962
            +R ++ +  ++   NY+  E  +++     L+ + D E  +L  DR  L + + T+GD +
Sbjct: 710  YRIDLMDVAKSIKTNYL--ESGNEILGDVALQKILDEEYDQLLDDRSFLRSFVFTNGDHN 767

Query: 963  WPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKN 1022
            WPLPVNL+R++ NAQ+ F +D  + SD+   E+V  V  + E+  VV GE  L+ EAQ N
Sbjct: 768  WPLPVNLRRIVQNAQQIFNIDRTKASDLTLSEIVRGVANVCEKFTVVRGEGRLTKEAQAN 827

Query: 1023 ATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            A+  F  L+RS  A KRV++E +L R AFEW +GEIES+F +S+V
Sbjct: 828  ASYLFQCLVRSRLACKRVIEEFKLNRIAFEWALGEIESQFAKSIV 872


>gi|83320420|gb|ABC02837.1| RNA polymerase II largest subunit, partial [Rozella allomycis]
          Length = 809

 Score = 1047 bits (2707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/821 (61%), Positives = 633/821 (77%), Gaps = 18/821 (2%)

Query: 267  AMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSIC 326
            A II+ N +L++ E  GAP H++SE+ QLLQFH+ATY +N +PG P+A Q+SGRP+KSI 
Sbjct: 1    ADIIKANVHLKKCEAEGAPGHVVSEYEQLLQFHVATYMENSIPGLPKAIQKSGRPLKSIS 60

Query: 327  SRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIE 386
            +RLK KEGR+RGNLMGKRVDFSARTVITPDP +++DQ+GVP +IA  LTYPE VTPYNIE
Sbjct: 61   ARLKGKEGRLRGNLMGKRVDFSARTVITPDPNLSLDQVGVPRTIAKTLTYPEIVTPYNIE 120

Query: 387  RLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVL 446
             L++LV  GP   PG   A+Y++RDDG R+DLR+    +D  L+ GY VERH+NDGD VL
Sbjct: 121  YLQKLVNNGPTEHPG---ARYVVRDDGNRIDLRF---KTDVVLQPGYLVERHINDGDVVL 174

Query: 447  FNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLE 506
            FNRQPSLHKMS+MGHRIK+MPYSTFRLNLSVT+PYNADFDGDEMN+H+PQS E +AE++E
Sbjct: 175  FNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTTPYNADFDGDEMNLHIPQSVEAKAELVE 234

Query: 507  LMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQP 566
            L +VP  IVSPQSN+P MGIVQDTL G RK T+R++F+ K + MNI+MW   ++GK+P+P
Sbjct: 235  LALVPTQIVSPQSNKPCMGIVQDTLCGVRKFTRRESFLNKAMVMNIVMWLPSWEGKLPRP 294

Query: 567  TILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLC 626
             ILKP PLW+GKQ+F++IIPK +N     + H DN+   ++ GDT V IE GEL+SG +C
Sbjct: 295  CILKPVPLWSGKQIFSMIIPKGVNCVTFHSTHPDNEYSDISPGDTKVLIEDGELISGIVC 354

Query: 627  KKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMET 686
            KKT+G + G LIHVI+ E G + A++F    Q +VN WLL N FSIGIGDTIAD +TM+ 
Sbjct: 355  KKTVGPAAGGLIHVIYNEHGSEVAKQFFNGVQTVVNNWLLINGFSIGIGDTIADRQTMKN 414

Query: 687  INDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLS 746
            IN+TI+ AK  VK  I+QAQ   L  EPG T+ E+FE+KVN+ LN ARD AG SAQ SL 
Sbjct: 415  INETIAIAKEEVKATIQQAQKGLLSCEPGMTLRETFESKVNKSLNKARDSAGKSAQTSLK 474

Query: 747  ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRG 806
            E NN+K MV AGSKGS+INISQMTACVGQQNVEGKRIPFGF  RTLPHFTK DYGPESRG
Sbjct: 475  EQNNVKQMVVAGSKGSYINISQMTACVGQQNVEGKRIPFGFRYRTLPHFTKGDYGPESRG 534

Query: 807  FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRN 866
            FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQR+LVKA+ED+M+KYDGTVRN
Sbjct: 535  FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRKLVKALEDVMIKYDGTVRN 594

Query: 867  SLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDD 926
            +LG++IQF YGEDGMD+V IE Q+LDS+++   +F+  ++ +      NP Y + E +  
Sbjct: 595  ALGEIIQFKYGEDGMDAVKIEKQSLDSMRLNNKKFEIKYKVDF----LNPMYGISENVLQ 650

Query: 927  LKTIKELRD------VFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTF 980
             + I+E+          D E ++L  DR  L  EI  SGDSSWPLP+N+KR+IWNAQ  F
Sbjct: 651  KEIIEEILATPVMLIALDKEYRQLTEDRNVL-REIFKSGDSSWPLPLNIKRMIWNAQSLF 709

Query: 981  KVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRV 1040
            K+D R+PSD+HP+++ + V    ++L     +D LS E  +NAT+ F IL+RS  + KRV
Sbjct: 710  KIDFRKPSDLHPIKIYKDVKDFCDKLNKNSEKDSLS-EQDRNATMLFQILIRSILSVKRV 768

Query: 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            L+E  L  ++FEW++GEIES+F  S V  GEM+G +AAQSI
Sbjct: 769  LEEFHLDIKSFEWLMGEIESKFYNSFVDSGEMVGTIAAQSI 809


>gi|113957452|gb|ABI49113.1| RNA polymerase II largest subunit [Pseudocyphellaria anomala]
          Length = 997

 Score = 1046 bits (2705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 539/1017 (52%), Positives = 710/1017 (69%), Gaps = 40/1017 (3%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GFM  +  ++ +VC NC KIL DE +  F  AL+ R+PK R   I   CK K  CE    
Sbjct: 1    GFMTKIKKLLETVCHNCGKILVDESNSAFADALRYRDPKRRFDAIWRLCKTKMVCETAAA 60

Query: 153  IDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTL 212
             +    D  +  K + GGCG  QP++  EGMK+   +K Q+   +++ Q PE    K+ +
Sbjct: 61   AEDDNMDKSKEPKHDHGGCGNVQPEVRREGMKLNGTWKPQKGDEENEGQQPE----KKPI 116

Query: 213  TAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP------------VRPSD 260
            T +  L + + IS E+ Q +GL+  YARP+WMI+ VLP+PPPP            +R  D
Sbjct: 117  TPQMALNIFRHISTEEIQKIGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGMRGED 176

Query: 261  DLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGR 320
            DLT++L  IIR + N+R  E  G+PAH++++F QLLQFH+ATY DN++ GQP+A Q+SGR
Sbjct: 177  DLTYKLGDIIRASGNVRTCEAEGSPAHVVADFEQLLQFHVATYMDNDIAGQPQALQKSGR 236

Query: 321  PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETV 380
            P+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPETV
Sbjct: 237  PVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETV 296

Query: 381  TPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLN 440
            TPYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KVERH+ 
Sbjct: 297  TPYNIQKLHQLVKNGPNDHPG---AKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHII 353

Query: 441  DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFET 500
            DGD+++       HK S+MGHR+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ET
Sbjct: 354  DGDYIIXXXXXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 413

Query: 501  RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFD 560
            RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ K+  MNIL+W  D+ 
Sbjct: 414  RAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNILLWVPDWG 473

Query: 561  GKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAA--WHADNDKGILTAGDTLVRIEKG 618
            G +PQP ILKPRP WTGKQ+ +L++P  +NL R+++  +   ND G+L +G        G
Sbjct: 474  GVLPQPAILKPRPKWTGKQIISLVVPPGLNLSRSSSEGFSPLNDDGLLVSG--------G 525

Query: 619  ELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            EL+ G   KK++G ++G +IH+I+ E GP+AA  F    Q +VNYWLL N FSIGIGDTI
Sbjct: 526  ELMYGLFNKKSVGATSGGIIHIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTI 585

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
             D  T++ I + ++K K +V  + + A +  LEP PG  + E+FE+KV++ LN ARD+AG
Sbjct: 586  PDRNTIQRIENAVNKQKEDVAEITRSATENDLEPLPGMNVRETFESKVSKALNKARDDAG 645

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
            +  ++SL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKD
Sbjct: 646  TVTEESLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKD 705

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
            DY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M 
Sbjct: 706  DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMA 765

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE----ENW 914
            KYDGTVRNSLGD++QF+YGEDG+D V IESQ +D +     +F+K FR ++ +     + 
Sbjct: 766  KYDGTVRNSLGDIVQFVYGEDGLDGVHIESQRVDIITCSDEQFEKKFRVDLMDPRPGASI 825

Query: 915  NPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRL 972
            +P+++ Q  E   DL    E++   D E  +L+A R  L        +    LP+N+ R+
Sbjct: 826  SPDFLEQATEMAGDL----EIQGYLDEEYDQLQAARDFLRKN-KRDDNEQLQLPINVIRI 880

Query: 973  IWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 1032
            +  A+ TFK+     S++HP EV+  V  L +RL VV  +D LS E Q NAT+ F   LR
Sbjct: 881  LDTAKTTFKIKDGARSNLHPAEVIPQVQNLLDRLVVVRDDDDLSREGQHNATILFKAQLR 940

Query: 1033 STFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1089
            S  A KR++ E  L + AF+ V+GEIESRF ++ V PGEM+G +AAQSIGEPATQMT
Sbjct: 941  SRLAFKRLVMECSLNKLAFQHVLGEIESRFCRAAVNPGEMVGVLAAQSIGEPATQMT 997


>gi|397135969|gb|AFO11479.1| RNA polymerase I, partial [Trigonopsis variabilis]
          Length = 871

 Score = 1042 bits (2694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/883 (58%), Positives = 655/883 (74%), Gaps = 23/883 (2%)

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
            K  DD +Q PE    ++ LT + VL V K IS+ED Q LGLN  YARP+WMI+ VLP+PP
Sbjct: 2    KHADDSDQ-PE----RRQLTPQEVLNVFKHISNEDIQKLGLNEDYARPEWMIVTVLPVPP 56

Query: 254  P----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
            P            R  DDLT++LA I++ N N++R ++ GAPAH+++EF  LLQFH+ATY
Sbjct: 57   PPVRPSIAINDTARGEDDLTYKLADILKANANVQRCDQEGAPAHVVNEFETLLQFHVATY 116

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP + +D+
Sbjct: 117  MDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLALDE 176

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPE VTPYNI +L ELV  GP   PG   AKY+IRD G+R+DLRY K+
Sbjct: 177  VGVPRSIAKTLTYPEMVTPYNIHKLSELVRNGPDEHPG---AKYVIRDTGERIDLRYHKR 233

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            + D  L+ G+KVERH+ DGD VLFNRQPSLHKMS+M HR+++MPYSTFRLNLSVTSPYNA
Sbjct: 234  AGDIRLQYGWKVERHIVDGDAVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNA 293

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETR E+ ++ MVP  I+SPQSNRPVMGIVQDTL G RK+T RD F
Sbjct: 294  DFDGDEMNLHVPQSEETRTELSQICMVPLQIISPQSNRPVMGIVQDTLCGVRKMTVRDNF 353

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            I     MNI+MW  D+DG +P P +LKP+PLWTGKQ+ +++IPK INL R      D   
Sbjct: 354  IGYQETMNIMMWVPDWDGIIPPPAVLKPKPLWTGKQILSMVIPKGINLQRF-----DEGT 408

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
             ++   D  + IE GE++ G + KKT+G + G L+H+I  E GP   R F G  Q +VNY
Sbjct: 409  TLMNPKDNGMLIENGEIMFGVVDKKTVGATAGGLVHIIMREKGPYICRDFFGGVQTVVNY 468

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            WLL N FSIGIGDTIADA TM  I  TI +AK  V+NLI +AQ   L PEPG T+ ESFE
Sbjct: 469  WLLHNGFSIGIGDTIADADTMRHITKTIDEAKQQVQNLINEAQHNVLAPEPGMTLRESFE 528

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
            +KV++ LN ARD AG SA+ SL   NN+K MV AGSKGSFINISQM+ACVGQQ VEGKRI
Sbjct: 529  HKVSRALNQARDTAGRSAEMSLKNDNNVKQMVIAGSKGSFINISQMSACVGQQIVEGKRI 588

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
            PFGF DRTLPHFTKDDY PES+GF+ENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETG
Sbjct: 589  PFGFKDRTLPHFTKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 648

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRRLVKA+ED+ V+YD TVRNSLGD+IQF+YGEDG+D   +E QT+D++    + F++
Sbjct: 649  YIQRRLVKALEDVSVEYDSTVRNSLGDIIQFIYGEDGIDGTAVEKQTVDTIPGSDAAFER 708

Query: 904  AFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
             +R ++ + +      L E  +D+    E++ V D E ++L +DR  L   + T+GD +W
Sbjct: 709  RYRVDVTDRSKALKPSLLECGNDILDDIEVQKVLDQEYEQLLSDREYLRKVVFTNGDYNW 768

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNA 1023
            PLPVN++R+I NAQ+ F ++  + SD+ P EVVE V +L  +L V+ G+  L  EAQ+NA
Sbjct: 769  PLPVNIRRVIQNAQQIFNLNRSKASDLTPTEVVERVHELISKLVVLRGKGKLVHEAQENA 828

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
            T  F  L+RS  A +RV++E+RL R A +WV+G+IE++F +S+
Sbjct: 829  TYLFQCLIRSRLAVRRVIEEYRLNRVALDWVLGDIEAQFARSI 871


>gi|83320450|gb|ABC02852.1| RNA polymerase II largest subunit, partial [Rhizophlyctis rosea]
          Length = 1006

 Score = 1042 bits (2694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1021 (52%), Positives = 702/1021 (68%), Gaps = 36/1021 (3%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADED-DHKFKQALKIRNPKNRLKKILDA 140
            H+ELAKP+FH GF+  +  ++  +C +C+K+  DE  D +F +   +++ K R  ++   
Sbjct: 1    HIELAKPVFHPGFVTKIKKVLECICVSCAKLKIDETMDSRFARIRNLKDKKRRFNEVWRL 60

Query: 141  CKNKTKCE--GGDEIDVPGQDGEEPLKKNKGGCGAQQPKL--TIEGMKMIAEYKAQRKKN 196
             K+K  CE    D+ + PG   ++  K +  GCGA+QP+     EG ++  +YK   K  
Sbjct: 61   AKDKKTCEQPSADDDEEPGNSNKKAHKHD--GCGARQPEFRKEKEGFRLTMKYKQSSKDE 118

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D      +P  + +T++ ERVL + + ISDED + +GL+P++ARP+WM++ VLP+PP PV
Sbjct: 119  D------KPEVKAETISPERVLTIFRNISDEDIKDMGLSPQFARPEWMMISVLPVPPMPV 172

Query: 257  RPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
            RP+          DDLT+ L  I+  N+ LR     GAP H+IS+F   LQ+H+AT+ DN
Sbjct: 173  RPAVAVEGQAKGEDDLTYALRNIVETNKKLREALEQGAPLHVISDFELALQYHVATFMDN 232

Query: 307  ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
            +  G   A  +SGRP+K+I SRLK KEGR+RGNLMGKRVDFSARTVIT DP ++IDQ+GV
Sbjct: 233  DGAGANAAAHKSGRPLKTIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGV 292

Query: 367  PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
            P SIA NLT+PE VT  N E+L   V  GP   PG   AKY+I  +G R DLRY ++ S 
Sbjct: 293  PRSIARNLTFPEVVTKCNFEKLAAAVANGPTAHPG---AKYVINSNGDRTDLRYAREDS- 348

Query: 427  HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 486
              L++G KVERHL D D ++FNRQPSLHKMS+MGHR+K+MPYSTFRLNLSVTSPYNADFD
Sbjct: 349  VILKIGDKVERHLMDDDLIIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFD 408

Query: 487  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
            GDEMN+HVPQS++T+AE+ EL +VP+ IVSPQ N PVMGIVQDTL G    T+RDTF+ K
Sbjct: 409  GDEMNLHVPQSYQTKAEIQELCVVPRQIVSPQKNGPVMGIVQDTLCGITMFTQRDTFLRK 468

Query: 547  DVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGIL 606
            D+ MNILMW  D+DG +P+P ILKP PLWTGKQ+ +LIIP+ IN+      H D +K  +
Sbjct: 469  DMMMNILMWVPDWDGNIPEPAILKPVPLWTGKQMMSLIIPR-INMEGKHFGHPDAEKTWM 527

Query: 607  TAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 666
            + GDT V I+ GEL++G L K T+G++ G +IH    E GP+ A+ F   TQ +VNYWLL
Sbjct: 528  SPGDTRVIIQDGELIAGILSKGTVGSAAGGIIHTTMNEHGPEVAKGFFNGTQLVVNYWLL 587

Query: 667  QNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKV 726
             N FSIGIGDT+A+A  +  ++D +   K  V ++I +A++++LEP PG T+ E+FE+ V
Sbjct: 588  HNGFSIGIGDTVANAALLRRVDDHLRNGKEQVADIIAKAENEALEPSPGMTIKETFESYV 647

Query: 727  NQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 786
               L+ AR++AG      L + NN + MV AGSKGS +NI QM ACVGQQ VEGKRIP+G
Sbjct: 648  GAALSKAREDAGKGGLAGLGKQNNARHMVYAGSKGSDVNIGQMAACVGQQLVEGKRIPYG 707

Query: 787  FVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 846
            F  RTLPH+TKDDY  ESRGFV+NSY+RGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQ
Sbjct: 708  FRFRTLPHYTKDDYEAESRGFVDNSYVRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQ 767

Query: 847  RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFR 906
            RRLVKAMED+M KYDGTVRNSLG+V+QFLYGEDGMD   +E Q L+S+ M    F + ++
Sbjct: 768  RRLVKAMEDVMAKYDGTVRNSLGEVVQFLYGEDGMDGAKVEKQALESMVMSDETFRRKYK 827

Query: 907  FEMDEENWNPNYMLQEYIDDLKTIKEL-----RDVFDAEVQKLEADRYQLATEIATSG-D 960
             +M  E  N  Y L   + + K  + L         +AE ++LE DR QL T+I     D
Sbjct: 828  IDMHSE--NRRYALNGDLFEHKIRESLVGSTVEKTVEAEWRQLEEDRRQLWTKIFKGEFD 885

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
            + W LP N+ R I NAQ  F +   +  DM P  V   V  L   L VV G D LS EAQ
Sbjct: 886  NKWALPGNIMRWIKNAQHQFSISRSQLLDMGPDYVFNKVRDLCGDLVVVRGRDNLSKEAQ 945

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
             NAT  + IL+RS  AS+RVL+E RL R AF+WV+  I++RF Q+++ PGEM+G +AAQS
Sbjct: 946  ANATQLYQILIRSILASRRVLEEFRLNRAAFDWVLETIKARFDQAIINPGEMVGTLAAQS 1005

Query: 1081 I 1081
            I
Sbjct: 1006 I 1006


>gi|397135920|gb|AFO11455.1| RNA polymerase I, partial [Nakazawaea holstii]
          Length = 870

 Score = 1042 bits (2694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/882 (57%), Positives = 650/882 (73%), Gaps = 22/882 (2%)

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
            N D+ + PE    ++ LT   +L V K IS ED   LG N  YARP+WM++ VLP+PPP 
Sbjct: 1    NTDENEQPE----RRLLTPGEILNVFKHISPEDSYKLGFNDDYARPEWMLITVLPVPPPH 56

Query: 256  VRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
            VRPS          DDLT +LA I+++N ++++ E +G+P H+I+E+  LLQFH+ATY D
Sbjct: 57   VRPSVQVNDTARSEDDLTFKLADIVKYNMSVQKLEMDGSPQHVIAEYEALLQFHVATYMD 116

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            N++ GQP+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+G
Sbjct: 117  NDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVG 176

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP SIA  LTYPE VTPYNI +L ELV  GP+  PG   A+Y+ RD G+R+DL+Y K++ 
Sbjct: 177  VPRSIARTLTYPEMVTPYNIHKLTELVRNGPNEHPG---ARYVFRDTGERIDLKYHKRAG 233

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
            D  L+ G+ VERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFR+NLS TSPYNADF
Sbjct: 234  DIALQYGWIVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSATSPYNADF 293

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS ETRAE+ ++  VP  IVSPQSN+P+MGIVQDTL G RK+T RD FIE
Sbjct: 294  DGDEMNLHVPQSEETRAELSQICAVPLQIVSPQSNKPIMGIVQDTLCGVRKMTLRDVFIE 353

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGI 605
             D  MNIL W  D+DG++P+PTI+KP+PLWTGKQ+ +++IPK IN+ R      D     
Sbjct: 354  YDEVMNILYWIPDWDGRIPEPTIVKPKPLWTGKQMLSMVIPKGINIER-----KDEKFTY 408

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
            L+  DT + I  GE++ G + KKT+G + G LIH ++ E GP A     G+ Q +VNYWL
Sbjct: 409  LSKDDTGMLIVDGEIMLGVVNKKTVGATGGGLIHAVFREKGPQACATLFGNIQKVVNYWL 468

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGDTIADA T+ +I DTI+ AK+ V+ +I +AQ+  L PEPG T+ ESFE  
Sbjct: 469  LHNGFSIGIGDTIADAPTVRSITDTINAAKDKVQEIITKAQNNQLPPEPGMTLRESFEQN 528

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            V+QVLN ARD+ G +   SL + NN+K MV+AGSKGS INISQM+ACVGQQ VEGKRIPF
Sbjct: 529  VSQVLNQARDDVGKATADSLQDWNNVKQMVSAGSKGSNINISQMSACVGQQIVEGKRIPF 588

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 589  GFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 648

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRLVKA+EDIMV YDGT RNSLG+V+QF+YGEDG+D+  +E Q +D++      F+K +
Sbjct: 649  QRRLVKALEDIMVHYDGTTRNSLGNVLQFVYGEDGLDATQVEKQAIDTIPGTHEAFEKRY 708

Query: 906  RFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL 965
            + ++ +E+ + N  L EY  D+    EL+ V D+E ++L  DR  L      +GD  WPL
Sbjct: 709  KIDLMQESTSINPELLEYGSDILGNVELQQVLDSEYEQLLQDRQYLREVCFPTGDFQWPL 768

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
            PVN++R+I NAQK F +D  + SD+   E+V  V  L +RL V  G   L  E++ NAT+
Sbjct: 769  PVNIRRVIQNAQKIFHIDMTKASDLTLQEIVSGVQDLCQRLFVTKGFGELYEESKANATM 828

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
             F  L+RS  A +RV++E RL R AFEWV+GEIE +F +S+V
Sbjct: 829  LFQCLVRSRLACRRVIEEFRLNRVAFEWVVGEIEVQFQKSVV 870


>gi|123979354|gb|ABM81502.1| RNA polymerase II largest subunit [Parmeliella sp. AFTOL 334]
          Length = 982

 Score = 1041 bits (2693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1005 (53%), Positives = 694/1005 (69%), Gaps = 46/1005 (4%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEG---- 149
            FM  +  ++ +VC NC KIL DE +  F  AL+ R+PK R   I   CK K  CE     
Sbjct: 1    FMTKIKKLLETVCHNCGKILHDESNPAFADALRYRDPKRRFDAIWRLCKPKMVCETISAS 60

Query: 150  -GDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
              D +D P    +EP K + GGCG  QP++  EG+++   +K Q+   +++ Q  E    
Sbjct: 61   EDDNLDKP----KEP-KHDHGGCGNVQPEVRREGLRLTGTWKVQKGDEENEGQQNE---- 111

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP------------V 256
            K+ +T +  L + + IS E+ + +GL+  YARPDWMI+ VLP+PPPP            +
Sbjct: 112  KKPITPQMALNIFRHISTEEIKKMGLSNDYARPDWMIITVLPVPPPPVRPSISVDGGNGM 171

Query: 257  RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQ 316
            R  DDLT++L  IIR N N+RR E  G+PAH+++EF QLLQFH+ATY DN++ GQP+A Q
Sbjct: 172  RGEDDLTYKLGDIIRANGNVRRCETEGSPAHVVAEFEQLLQFHVATYMDNDIAGQPQALQ 231

Query: 317  RSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTY 376
            +SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTY
Sbjct: 232  KSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTY 291

Query: 377  PETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVE 436
            PETVTPYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KVE
Sbjct: 292  PETVTPYNIQKLHQLVKNGPNEHPG---AKYVIRDSGERIDLRHHKRAGEISLQYGWKVE 348

Query: 437  RHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 496
            RH+ DGDF         HK S+MGHR+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ
Sbjct: 349  RHIVDGDFXXXXXXXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 408

Query: 497  SFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW 556
            S ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ K+  MNIL+W 
Sbjct: 409  SEETRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSKEQVMNILLWV 468

Query: 557  EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAA--WHADNDKGILTAGDTLVR 614
             D+DG +PQP ILKPRP WTGKQ+ +L+IP  +NL R     +   ND G+L +G     
Sbjct: 469  PDWDGILPQPAILKPRPKWTGKQIISLVIPSGLNLNRAGGEGFSPVNDDGLLVSG----- 523

Query: 615  IEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGI 674
               G+L+ G L KK++G ++  +IH+I+ E GP+AA KF    Q +VNYWLL N FSIGI
Sbjct: 524  ---GKLMYGLLNKKSVGATSSGIIHIIFNEKGPEAAMKFFNGAQTVVNYWLLHNGFSIGI 580

Query: 675  GDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR 734
            GDTI D  T++ I D ++K K +V  + + A +  LEP PG  + E+FE+KV++ LN AR
Sbjct: 581  GDTIPDRNTIQQIEDAVNKQKEDVAEITRSATENELEPLPGMNVRETFESKVSKALNKAR 640

Query: 735  DEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPH 794
            D+AG+  +KSL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPH
Sbjct: 641  DDAGTVTEKSLKDLNNATQMALSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPH 700

Query: 795  FTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAME 854
            FTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAV+T+ETGYIQRRLVKA+E
Sbjct: 701  FTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVETAETGYIQRRLVKALE 760

Query: 855  DIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM----D 910
            D+M KYDGTVRNSLGD++QF+YGEDG+D V IESQ +D +     +F K FR ++     
Sbjct: 761  DVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIESQRVDIITCSDEQFKKKFRVDLMDPRQ 820

Query: 911  EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLK 970
            E   +P ++  E++ D+     L+   D E  +L+A R  L        D    LP+N+ 
Sbjct: 821  ETTISPEFL--EHVQDMFGDSNLQAYLDEEYDQLKAAREFLRMNKQDDND-QLQLPINII 877

Query: 971  RLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 1030
            R++  A+ TFK+     S++HP EVV  V  L ERL VV G+D LS E Q NATL F   
Sbjct: 878  RILDTAKTTFKIKDGARSNLHPGEVVPQVRDLLERLVVVRGDDDLSKEGQHNATLLFKAQ 937

Query: 1031 LRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGC 1075
            LRS  A KR++ E  L + AF+ V+GEIESRF ++ V PGEM+G 
Sbjct: 938  LRSRLAFKRLVVESSLNKLAFQHVLGEIESRFCRAAVNPGEMVGV 982


>gi|397135902|gb|AFO11446.1| RNA polymerase I, partial [Millerozyma farinosa]
          Length = 872

 Score = 1041 bits (2692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/883 (58%), Positives = 648/883 (73%), Gaps = 22/883 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN ++ + PE    ++ LT   +L V K IS +DC  LG N  YARP+WM++ VL +PPP
Sbjct: 2    KNFEENEQPE----RRLLTPSEILSVFKHISPDDCFRLGFNEDYARPEWMLITVLAVPPP 57

Query: 255  PVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
            PVRPS          DDLT +LA I++ N N++R E +G+P H+ISEF  LLQFH+ATY 
Sbjct: 58   PVRPSIAFNDTARGEDDLTFKLADILKANINVQRLEMDGSPQHVISEFEALLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  L+YPE VTPYNI RL E V  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 178  GVPISIAKTLSYPEIVTPYNIHRLTEYVRNGPNEHPG---AKYVIRDTGDRIDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMSHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ E+  VP  IVSPQSN+PVMGIVQDTL G RK+T RDTFI
Sbjct: 295  FDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKLTLRDTFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MN+L W   +DG +P P I+KP+PLWTGKQ+ ++ IPK I+L R      D+ K 
Sbjct: 355  EYDQVMNMLYWIPVWDGVIPPPAIVKPKPLWTGKQLLSMAIPKGIHLQR-----FDDGKN 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  D+ + I  GE++ G + KKT+G++ G LIH +  E GP    +  G  Q +VNYW
Sbjct: 410  LLSPKDSGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVMREKGPQVCAQLFGSIQKVVNYW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIADA TM+ +  TI  AK  V+ +I  AQ   L+PEPG T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADASTMKNVTTTIEDAKRKVQEIINDAQQNKLDPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ +L + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  NVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DRTLPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E Q +DS+      F++ 
Sbjct: 650  IQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQAIDSIPGSDESFERR 709

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            +R ++ + N +    L E   +++   +L+ V D E  +L +DR  L       GD +WP
Sbjct: 710  YRIDVLDPNRSIKESLLETGKEIRGDVKLQKVLDEEYNQLLSDRQYLREVCFPGGDFNWP 769

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVNL+R+I NAQ+ F     + SD+   E+V +V  L  +L VV G+  L  EAQ NAT
Sbjct: 770  LPVNLRRIIQNAQQIFHNGRHKTSDLKLDEIVRSVQDLCSKLLVVRGDKALVKEAQNNAT 829

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L F  LLRS  AS+R+++E++L + +FEWV+GEIE++F +S+V
Sbjct: 830  LLFQCLLRSRLASRRIIEEYKLNKISFEWVLGEIETQFQKSIV 872


>gi|397135810|gb|AFO11400.1| RNA polymerase I, partial [Ogataea glucozyma]
          Length = 870

 Score = 1040 bits (2690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/882 (58%), Positives = 659/882 (74%), Gaps = 25/882 (2%)

Query: 198  DQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV- 256
            + E+  E VER+Q +TA  +L + K IS EDC  LG N  YARP+WM++ VLP+PPPPV 
Sbjct: 2    NSEEETEQVERRQ-VTATEILNIFKHISTEDCYKLGFNEDYARPEWMLITVLPVPPPPVR 60

Query: 257  ---------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNE 307
                     R  DDLT++LA I++ N N+++ E +G+P H+ISEF  LLQ+H+ATY DN+
Sbjct: 61   PSVAFTDSKRSEDDLTYKLADILKANINVQKFEMDGSPQHVISEFEALLQYHVATYMDND 120

Query: 308  LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 367
            + GQP+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP + +DQ+GVP
Sbjct: 121  IAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVP 180

Query: 368  WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 427
             SIA  L+YPE VTPYNI++L ELV  GP+  PG   AKY+IRD G R+DLR+ K++ D 
Sbjct: 181  KSIARTLSYPEIVTPYNIQKLTELVRNGPNEHPG---AKYVIRDSGDRIDLRFNKRAGDI 237

Query: 428  HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDG 487
             L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFR+NLSVTSPYNADFDG
Sbjct: 238  QLQYGWKVERHLMDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDG 297

Query: 488  DEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
            DEMN+HVPQS+ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD+FIE D
Sbjct: 298  DEMNLHVPQSYETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIEYD 357

Query: 548  VFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILT 607
              MN+  W  ++DG VPQP ILKP+PLW+GKQ+ ++ IP+ I L R        D  +L+
Sbjct: 358  QVMNMCFWIPNWDGVVPQPAILKPKPLWSGKQILSMCIPRGIFLQRL-------DGSLLS 410

Query: 608  AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 667
              D+ + I  GE++ G + K T+G S G LIH +  E GP    +  G+ Q +VNYWLL 
Sbjct: 411  PKDSGMLIVNGEIMFGVVNKATVGASAGGLIHTVMREKGPTVCAQLFGNIQKVVNYWLLH 470

Query: 668  NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVN 727
            N FSIGIGD IAD+ TM+TI +TI+ AK  V+ +I  AQ+  LE EPG T+ ESFE KV+
Sbjct: 471  NGFSIGIGDAIADSATMKTITETIAVAKEKVQEVIIDAQNNLLEAEPGMTVRESFEQKVS 530

Query: 728  QVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 787
            ++LN ARD AG SA+ SL +SNN+K MVTAGSKGS+INISQM+ACVGQQ VEGKRI FGF
Sbjct: 531  KLLNEARDSAGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGF 590

Query: 788  VDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQR 847
             DR+LPHFTKDDY  ES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQR
Sbjct: 591  ADRSLPHFTKDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 650

Query: 848  RLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF 907
            RL+KA+EDIMV YDGT RNSLGD+IQFLYGEDG+D   +E QT+D++    + F+K +R 
Sbjct: 651  RLLKALEDIMVHYDGTTRNSLGDIIQFLYGEDGIDGTQVEKQTVDTIPGSLAAFEKKYRV 710

Query: 908  EM--DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL 965
            ++   E +  P+  L EY  ++     L+ + D E ++L ADR  L  +  T+G+++WPL
Sbjct: 711  DLMNAETSIRPD--LVEYGSEIVGDISLQKILDEEYEQLLADREYLRKDCFTTGENNWPL 768

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
            PVN++R+I NAQ+ F VD  + SD+   E+V+ V +L ++ KVV G   L  EAQ+NATL
Sbjct: 769  PVNIRRVIQNAQQIFHVDQAKASDLTIPEIVKGVQELTKKFKVVRGTGGLLDEAQENATL 828

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
             F  L+RS  A++RVL+E RL R+AFEWV+G IE  FL+SLV
Sbjct: 829  LFQCLVRSRLATRRVLEEFRLNRDAFEWVVGTIEQHFLKSLV 870


>gi|397135934|gb|AFO11462.1| RNA polymerase I, partial [Candida petrohuensis]
          Length = 868

 Score = 1039 bits (2687), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/880 (58%), Positives = 654/880 (74%), Gaps = 26/880 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN +    PE    K+ LT   VL V K IS ED   +GL+  YARP+WMI+ VLP+PPP
Sbjct: 2    KNSEDGDQPE----KRVLTPTEVLNVFKHISKEDVTRMGLSEDYARPEWMIITVLPVPPP 57

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT++LA I++ N N++R E++GAPAH+I+EF  LLQ+H+ATY 
Sbjct: 58   PVRPSIAINDTARGEDDLTYKLADILKANGNVQRCEQDGAPAHVINEFEALLQYHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPE VTPYNI RL +LV  GP+  PG   AKY+IRD G+R+DLRY K++
Sbjct: 178  GVPRSIARTLTYPEIVTPYNIHRLTQLVRNGPNEHPG---AKYVIRDTGERIDLRYHKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERH++DGD  LFNRQPSLHKMS+M HR+++MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHIDDGDPXLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ +L MVP  I+SPQSN+PVMGIVQDTL G RK+TKRDTF+
Sbjct: 295  FDGDEMNLHVPQSEETRAELSQLCMVPLQIISPQSNKPVMGIVQDTLCGIRKLTKRDTFV 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MN+L W  D+DG VPQP +LKP+PLWTGKQ+ +L IPK I + R      D+   
Sbjct: 355  EFDQVMNLLFWIPDWDGVVPQPAVLKPKPLWTGKQIVSLCIPKGIFMQRF-----DDQNP 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            I +  D  + I KGE++ G + KKT+G + G LIH I  E GP     F G+ Q +VNYW
Sbjct: 410  ITSPKDNGMLIAKGEVIYGVVDKKTVGATAGGLIHTIMREKGPQICCNFFGNLQKVVNYW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIADA TM+ I +TI++AKN V+ +I +AQ   L PEPG T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADAATMKDITNTIAEAKNKVQEIILEAQANKLAPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ SL E NN+K MV AGSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  NVSRVLNQARDTAGRSAEMSLKELNNVKQMVIAGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DR+LPHFTKDD+ PES+GF+ENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFQDRSLPHFTKDDHSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+ED+MV+YDGT RNSLGDVIQF+YGEDG+D   +E QT+D++      F K 
Sbjct: 650  IQRRLVKALEDVMVQYDGTTRNSLGDVIQFVYGEDGLDGTQVEKQTVDTIPGSDEAFVKR 709

Query: 905  FRFEMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSS 962
            FR ++ +  ++   NY+  E  +++     L+++ D E Q+L  DR  L + + T+GD +
Sbjct: 710  FRIDLMDASKSIKTNYL--ESGNEILGDVALQNILDEEYQQLVDDRNTLRSFVFTNGDHN 767

Query: 963  WPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKN 1022
            WPLPVN +R++ NAQ+ F +D  + SD+   E+V  V ++ ++  VV GE  L+ +AQ N
Sbjct: 768  WPLPVNFRRIVQNAQQIFNIDRTKASDLTLSEIVTGVAEVCQKFTVVRGEGRLTKDAQAN 827

Query: 1023 ATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
            A+  F  L+RS  A KRV++E +L R AFEW +GEIES+ 
Sbjct: 828  ASYLFQCLVRSRLACKRVIEEFKLNRIAFEWXLGEIESQL 867


>gi|397135963|gb|AFO11476.1| RNA polymerase I, partial [Dipodascopsis uninucleata]
          Length = 871

 Score = 1038 bits (2685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/883 (58%), Positives = 658/883 (74%), Gaps = 23/883 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIP-- 252
            KN D+  L +P ER+Q L  + +L V K ISD+D + LGLN  YARPDW+I+ VLP+P  
Sbjct: 2    KNSDE--LDQP-ERRQ-LKPQAILNVFKHISDQDIERLGLNADYARPDWLIITVLPVPPP 57

Query: 253  --------PPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT++LA I++ N N+RR ++ GAPAH+++EF  LLQFH+ATY 
Sbjct: 58   PVRPSIAITEAARGEDDLTYKLADILKANANVRRCDQEGAPAHVLNEFESLLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP + +DQ+
Sbjct: 118  DNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLALDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPE VTPYNI RL +LV  GP+  PG   AKY+IRD G+R+DLRY K++
Sbjct: 178  GVPRSIARTLTYPEVVTPYNIHRLTQLVRNGPNEHPG---AKYVIRDTGERIDLRYHKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G++VERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDITLQYGWRVERHIVDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+PVMGIVQDTL G RK+TKRDTF+
Sbjct: 295  FDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTKRDTFL 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
              D  MNIL W  ++DG +P P ILKP+PLWTGKQ+ +++IPK INL R      D+   
Sbjct: 355  NFDQVMNILYWVPNWDGSIPHPAILKPKPLWTGKQLLSMVIPKGINLQR-----FDDKNT 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  D  + IE GE++ G + KKT+G ++G LIH I  E GP   R F    Q +VNYW
Sbjct: 410  LLSPRDNGMMIENGEIMYGVVDKKTVGATSGGLIHTIMREKGPTVTRDFFSGVQTVVNYW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIADAKTM  I +TI++AK  V+ +I  AQ   L PEPG T+ ESFE 
Sbjct: 470  LLHNGFSIGIGDTIADAKTMRNITNTIAQAKREVQQVILDAQANRLPPEPGMTLRESFEQ 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
            KV++VLNTARD AG SA+ SL++ NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  KVSKVLNTARDTAGRSAETSLTDMNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF  RTLPHFTKDDY PESRGF+ENSYLRGLTPQEFFFHAM GREG+IDTAVKT+ETGY
Sbjct: 590  FGFSYRTLPHFTKDDYSPESRGFIENSYLRGLTPQEFFFHAMVGREGIIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+ED+ V+YD TVRNSLGD++QF+YGEDG+D+ ++E Q+LDS+      F++ 
Sbjct: 650  IQRRLVKALEDVSVQYDCTVRNSLGDILQFVYGEDGLDATYVEKQSLDSMSGSNERFEQR 709

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            ++ ++ +        L E  +D+    E + V D E ++L ADR  L T +  +GD +WP
Sbjct: 710  YKIDLMDPARTLKPTLLECGNDIIGDSETQKVLDEEYEQLCADRKFLRT-VFKNGDDAWP 768

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVN++R+I N+Q+ F ++ ++ SD+ P+EV E V  L  +  V  G++ +  E Q+NAT
Sbjct: 769  LPVNIQRVIRNSQQIFHLNRQKASDLTPIEVAERVRDLCRKFIVTRGDNRIVQEIQENAT 828

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
              F  L+RS  A KRV +E+RL R AFEWV+G+IE++F +++V
Sbjct: 829  TLFQCLVRSRLACKRVFEEYRLNRVAFEWVVGQIEAQFARAVV 871


>gi|397135808|gb|AFO11399.1| RNA polymerase I, partial [Ogataea methanolica]
          Length = 870

 Score = 1038 bits (2683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/880 (58%), Positives = 656/880 (74%), Gaps = 25/880 (2%)

Query: 200  EQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV--- 256
            E+  E VER+Q L A  +L + K IS EDC  LG N  YARP+WM++ VLP+PPPPV   
Sbjct: 4    EEDTEQVERRQ-LNATEILNIFKHISPEDCIKLGFNEDYARPEWMLITVLPVPPPPVRPS 62

Query: 257  -------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELP 309
                   R  DDLT++LA I++ N N+++ E +G+P H+ISEF  LLQ+H+ATY DN++ 
Sbjct: 63   VAFTDSKRSEDDLTYKLADILKANINVQKFEMDGSPQHVISEFEGLLQYHVATYMDNDIA 122

Query: 310  GQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWS 369
            GQP+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+GVP S
Sbjct: 123  GQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKS 182

Query: 370  IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHL 429
            IA  L+YPE VTPYNI++L E V  GP+  PG   AKY+IRD G R+DLR+ K++ D  L
Sbjct: 183  IARTLSYPEIVTPYNIQKLTEYVRNGPNEHPG---AKYVIRDSGDRIDLRFNKRAGDIQL 239

Query: 430  ELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDE 489
            + G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFR+NLSVTSPYNADFDGDE
Sbjct: 240  QYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDE 299

Query: 490  MNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVF 549
            MN+HVPQS+ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RDTF+E D  
Sbjct: 300  MNLHVPQSYETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFVEYDQV 359

Query: 550  MNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAG 609
            MN+  W   +DG VPQP ILKP+PLWTGKQ+ +L IPK I L R        D  +L+  
Sbjct: 360  MNMCFWIPQWDGVVPQPAILKPKPLWTGKQMMSLCIPKGIFLQRL-------DGSLLSPK 412

Query: 610  DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
            D+ + I  GE++ G + K T+G + G LIH +  E GP    +  G+ Q +VNYWLL N 
Sbjct: 413  DSGMLIVDGEIMFGVVNKATVGATAGGLIHTVMREKGPQVCAQMFGNIQKVVNYWLLHNG 472

Query: 670  FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
            FSIGIGD IAD +TM+TI +TI  AK  V+ +I  AQ+  LEPEPG T+ ESFE KV+++
Sbjct: 473  FSIGIGDAIADTETMKTITETIGVAKEKVQEVILDAQNNILEPEPGMTVRESFEQKVSKI 532

Query: 730  LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
            LN ARD AG SA+ SL E+NN+K MVTAGSKGS+INISQM+ACVGQQ VEGKRI FGF D
Sbjct: 533  LNEARDTAGKSAESSLKEANNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFSD 592

Query: 790  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 849
            R+LPHFTKDDY  ES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRL
Sbjct: 593  RSLPHFTKDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRL 652

Query: 850  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM 909
            +KA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E QT+D++    + F+K +R ++
Sbjct: 653  LKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQTVDTIPGSSAAFEKKYRVDL 712

Query: 910  --DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPV 967
               E++  P+Y+  EY  ++    E++   D E ++L  DR  L  E   +G+++WPLPV
Sbjct: 713  MNAEKSIRPDYI--EYGTEILGDIEIQKALDEEFEQLVKDRDYLRNECFITGENNWPLPV 770

Query: 968  NLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFF 1027
            N++R++ NAQ+ F VD  + SD+   E+VEAV KL ++  VV G   +  EAQ+NATL F
Sbjct: 771  NIRRIVQNAQQIFHVDQAKASDLTIPEIVEAVQKLCKKFIVVRGSGGILDEAQENATLLF 830

Query: 1028 NILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
              L+RS  A++RVL+E RL R+AFEWVIG IE +F +SLV
Sbjct: 831  QCLVRSRLATRRVLEEFRLNRDAFEWVIGTIEHQFFKSLV 870


>gi|397135967|gb|AFO11478.1| RNA polymerase I, partial [Dipodascopsis anomala]
          Length = 872

 Score = 1037 bits (2682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/871 (58%), Positives = 648/871 (74%), Gaps = 19/871 (2%)

Query: 207  ERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIP----------PPPV 256
            ERKQ L  + +  V K IS ++ + LGLN  YARP+W+I+ VLP+P              
Sbjct: 11   ERKQ-LKPQDIFNVFKHISTDELEKLGLNADYARPEWLIITVLPVPPPPVRPSIAITEAA 69

Query: 257  RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQ 316
            R  DDLT++LA I++ N N+RR ++ GAPAH+++EF  LLQFH+ATY DN++ GQP+A Q
Sbjct: 70   RGEDDLTYKLADILKANANVRRCDQEGAPAHVVNEFEALLQFHVATYMDNDIAGQPQALQ 129

Query: 317  RSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTY 376
            +SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP + +DQ+GVP SIA  LTY
Sbjct: 130  KSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLALDQVGVPRSIARTLTY 189

Query: 377  PETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVE 436
            PE VTPYNI +L +LV  GP+  PG   AKY+IRD G+R+DLRY K++ +  L+ G++VE
Sbjct: 190  PEIVTPYNIHKLSQLVRNGPNEHPG---AKYVIRDTGERIDLRYHKRAGEISLQYGWRVE 246

Query: 437  RHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 496
            RH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ
Sbjct: 247  RHIVDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 306

Query: 497  SFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW 556
            S ETRAE+  L  VP  IVSPQSN+PVMGIVQD+L G RK+TKRD+F+  D  MNIL W 
Sbjct: 307  SEETRAELRMLCAVPLQIVSPQSNKPVMGIVQDSLCGVRKMTKRDSFLSYDQVMNILFWV 366

Query: 557  EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIE 616
             ++DG +PQP ILKP+  WTGKQ+ +++IPK IN+ R      D+   +L+  D  + IE
Sbjct: 367  PNWDGVIPQPAILKPKAYWTGKQMMSMVIPKGINMQRF-----DDKNTLLSVRDNGMMIE 421

Query: 617  KGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD 676
             GE++ G + KKT+G ++G LIH I  + GP   R F+G  Q +VNYWLL N FSIGIGD
Sbjct: 422  NGEIMYGVVDKKTVGATSGGLIHTIMRDKGPVPTRDFIGGVQTVVNYWLLHNGFSIGIGD 481

Query: 677  TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDE 736
            TIADAKTM  I +TIS+AK  V+ LI  AQ   L  EPG T+ ESFE KV++VLN ARD 
Sbjct: 482  TIADAKTMRNITNTISQAKKEVQQLILDAQANVLPAEPGMTLRESFEQKVSKVLNQARDT 541

Query: 737  AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFT 796
            AG SA+ SL+++NN+K MV AGSKGSFINISQM+ACVGQQ VEGKRIPFGF  RTLPHFT
Sbjct: 542  AGRSAETSLTDANNVKQMVVAGSKGSFINISQMSACVGQQIVEGKRIPFGFSYRTLPHFT 601

Query: 797  KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDI 856
            KDDY PESRGF+ENSYLRGLTPQEFFFHAM GREG+IDTAVKT+ETGYIQRRLVKA+ED+
Sbjct: 602  KDDYSPESRGFIENSYLRGLTPQEFFFHAMAGREGIIDTAVKTAETGYIQRRLVKALEDV 661

Query: 857  MVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNP 916
            MVKYD TVRNSLGDV+QF+YGEDG+D+ ++E Q +DS+      F+  F+ ++ +  +  
Sbjct: 662  MVKYDATVRNSLGDVVQFVYGEDGLDATYVEKQVIDSMSGSNDRFEHRFKIDLMDPEFTL 721

Query: 917  NYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNA 976
               L E  +D+    E + V D E  +L  DR  L  ++  +G+ SWPLPVN++R+I NA
Sbjct: 722  KPSLLECGNDIIGDLETQKVLDEEFAQLSEDRKFLREKVFKNGEDSWPLPVNIQRIIRNA 781

Query: 977  QKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFA 1036
            Q+ F +D ++ SD+ P+E+VE V  L +R  VV G++ +  E Q NAT  F   +RS  A
Sbjct: 782  QQIFHLDKQKASDLTPVEIVEKVRALGDRFFVVRGDNEVVREVQTNATHLFQTFVRSRLA 841

Query: 1037 SKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
             KRVL+E+RL R AFEWV+GEIE++F +++V
Sbjct: 842  CKRVLEEYRLNRIAFEWVLGEIEAQFGRAVV 872


>gi|110669643|gb|ABG81916.1| RNA polymerase II largest subunit, partial [Agonimia sp. AFTOL 684]
          Length = 1023

 Score = 1036 bits (2678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 540/1037 (52%), Positives = 702/1037 (67%), Gaps = 36/1037 (3%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFG ++LA P++H GF+  V  I+ +VC NC KI A  D  + + AL IR+ K R 
Sbjct: 1    ECPGHFGTIKLAVPVYHYGFLGKVKKILETVCHNCGKIKA-VDSEELRYALSIRDRKKRF 59

Query: 135  KKILDACKNKTKCEG--GDEIDVP-GQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKA 191
            + I    + +  C+    DE D P G+D    +K   GGCG  QP +   G+++ A+YK 
Sbjct: 60   ELIWRLSQKQNICQADSADEEDDPFGKDKGGKIKH--GGCGNAQPAIRKTGLELWAQYKP 117

Query: 192  QRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPI 251
             RK +DD+E +PE    K  +   + L V + ++D+  + LGLN  +ARP+WMILQ LP+
Sbjct: 118  -RKGDDDEETVPE----KSQIWPAQALQVFQHLTDDTLETLGLNLDFARPEWMILQSLPV 172

Query: 252  PPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQF 298
            PPPPV             R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+
Sbjct: 173  PPPPVRPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRVNAEGAPEHIAKELQALLQY 232

Query: 299  HIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPT 358
            H+ATY DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP 
Sbjct: 233  HVATYMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPN 292

Query: 359  INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDL 418
            +++D++GVP SIA  LTYPETVT YNI +L  LV  GP   PG   A+YIIR  G+R+DL
Sbjct: 293  LSLDEVGVPISIARTLTYPETVTQYNINKLARLVASGPEQHPG---ARYIIRPQGERIDL 349

Query: 419  RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVT 478
            R+ K +S   L+ G+KVERH+ DGD +LFNRQPSLHK S+MGHR+++MPYSTFRLNLSVT
Sbjct: 350  RFHKNTSQIILQNGWKVERHIMDGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVT 409

Query: 479  SPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKIT 538
            +PYNADFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI 
Sbjct: 410  TPYNADFDGDEMNLHVPQSEETRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKIC 469

Query: 539  KRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAW- 597
            +RD F+ ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     
Sbjct: 470  RRDIFLSREEVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMISMVLPPALNLVRIDGKP 529

Query: 598  HADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHT 657
            +    +    AGD+ + +  G+LL G   KK++GT +  +IH I+ E G + A  F    
Sbjct: 530  NLPAGERFAPAGDSGLFVADGQLLFGLFNKKSVGTGSNGIIHTIYNEFGHETAMGFFNGA 589

Query: 658  QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
            Q +VNYWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  
Sbjct: 590  QTVVNYWLLHNGFSIGIGDTVPDVGTVEKIKLEVDKKKAEVERITQSAVAEDLEALPGMN 649

Query: 718  MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
            + E+FE+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+
Sbjct: 650  VRETFESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQS 709

Query: 778  VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
            VEGKRIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAV
Sbjct: 710  VEGKRIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 769

Query: 838  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
            KT+ETGYIQRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M 
Sbjct: 770  KTAETGYIQRRLVKALEEVTVKYDSTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMS 829

Query: 898  KSEFDKAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLAT- 953
               FDK FR ++ E     W       E   ++    +++ +FD E  +L  DR  L + 
Sbjct: 830  DGAFDKQFRVDLMEPKKLVWQGRL---EQASEIHGDVDVQKLFDEEYDQLVEDRSFLRSI 886

Query: 954  -EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGE 1012
             + ATS D   PLP+N+ R++  A+ TFK+    PSD+HP  V+  V +L + L +V G 
Sbjct: 887  KKAATSADEMMPLPMNIVRILNQARTTFKIQSGAPSDLHPSYVIPKVKRLLDSLVIVRGG 946

Query: 1013 DPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEM 1072
            D +S+EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G +E+RF+++  +PGEM
Sbjct: 947  DRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAVETRFIKATASPGEM 1006

Query: 1073 IGCVAAQSIGEPATQMT 1089
            +G +AAQSIGEPATQMT
Sbjct: 1007 VGVLAAQSIGEPATQMT 1023


>gi|397135952|gb|AFO11471.1| RNA polymerase I, partial [Yarrowia lipolytica]
          Length = 870

 Score = 1036 bits (2678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/884 (58%), Positives = 650/884 (73%), Gaps = 24/884 (2%)

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
            K  DD    PE    K+ LT   +L V K IS EDCQ LGLN  YARP+W+I+  LP+PP
Sbjct: 1    KNGDDMGDSPE----KRLLTPAEILNVFKHISSEDCQRLGLNEDYARPEWLIITTLPVPP 56

Query: 254  P----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
            P            R  DDLT++LA I++ N N++R E+ GAPAH+++EF  LLQ+H+ATY
Sbjct: 57   PPVRPSIAINDTARGEDDLTYKLADILKANANVQRCEQEGAPAHVVNEFESLLQYHVATY 116

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP + +DQ
Sbjct: 117  MDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQ 176

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPE VTP+NI +L E V  GP+  PG   AKY+IRD G+R+DLRY K+
Sbjct: 177  VGVPRSIARTLTYPEIVTPFNIHKLTEYVRNGPNEHPG---AKYVIRDTGERIDLRYHKR 233

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            + D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+++MPYSTFRLNLSVTSPYNA
Sbjct: 234  AGDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNA 293

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQSN+PVMGIVQDTL G RK+T RD+F
Sbjct: 294  DFDGDEMNLHVPQSEETRAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGVRKMTIRDSF 353

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            I+ D+ MNIL W  ++DG VP P ILKP+PLWTGKQ+ ++ IPK I+L R      D+  
Sbjct: 354  IDYDMVMNILFWIPNWDGVVPTPAILKPKPLWTGKQMVSMCIPKGIHLQR-----FDDQN 408

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
             I    D  + I  G+++ G + KKT+G + G L+H I  E G      F G  Q +VN+
Sbjct: 409  PITCPKDNGMYIIDGQIMWGVVDKKTIGATGGGLVHTIMREKGSAVCCNFFGTIQKVVNF 468

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            WLL   FSIGIGDTIAD+ TM  + +TI +AK  VK +I +A   +L  E G TM ESFE
Sbjct: 469  WLLHYGFSIGIGDTIADSATMRDVTETIEEAKKKVKEIILEAHANTLTAEAGMTMRESFE 528

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
            + V++VLN ARD AG SA+ SL + NN+K MV AGSKGSFINISQM+ACVGQQ VEGKR+
Sbjct: 529  HNVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVAGSKGSFINISQMSACVGQQMVEGKRV 588

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
            PFGF DRTLPHF KDDY PES+GF+ENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETG
Sbjct: 589  PFGFADRTLPHFCKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 648

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRRLVKA+ED+MV+YDGTVRNSLGDVIQF+YGEDG+D   +E QT+D++      F++
Sbjct: 649  YIQRRLVKALEDVMVQYDGTVRNSLGDVIQFVYGEDGLDGAQVEKQTVDTIPGSDESFER 708

Query: 904  AFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
              R+++D  N     +  E  +D+    E++ V D E  +L  DR  L  E+ T+GD +W
Sbjct: 709  --RYKIDLMNPKTKPLNIESGNDIVGDVEVQRVLDEEYNQLLTDRRLLREEVFTNGDHNW 766

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNA 1023
            PLPVN++R++ N+Q+ F VD  + SD+   E+VE V  L +RL +V G+  L+ EAQ+NA
Sbjct: 767  PLPVNIRRVVQNSQRIFNVDKSKVSDLTIPEIVEGVQSLCKRLTIVRGDSSLAKEAQENA 826

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            T+ F  L+RS F +KRV++E+RL R AFEWV+GEIE++F +S+V
Sbjct: 827  TMLFQCLVRSRFPTKRVIEEYRLNRAAFEWVMGEIETQFAKSVV 870


>gi|397135960|gb|AFO11475.1| RNA polymerase I, partial [Dipodascus albidus]
          Length = 870

 Score = 1035 bits (2677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/874 (58%), Positives = 648/874 (74%), Gaps = 20/874 (2%)

Query: 204  EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP---------- 253
            E V+ ++ L+   +L V K IS +D   LGLN  YARPDWMI+ VLP+PP          
Sbjct: 7    EAVQERRPLSPAEILNVFKHISSQDLYRLGLNEDYARPDWMIITVLPVPPPPVRPSIAIN 66

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++LA II+ N N++R E+ GAPAH+I+EF  LLQ+H+ATY DN++ GQP+
Sbjct: 67   ESARGEDDLTYKLADIIKANANVQRCEQEGAPAHVINEFEALLQYHVATYMDNDIAGQPQ 126

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++DQ+GVP SIA  
Sbjct: 127  ALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPRSIART 186

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            L+YPETVTPYNI +L + V  GP+  PG   AKY+IRD G+R+DLRY K++ D  L+ G+
Sbjct: 187  LSYPETVTPYNIHKLTQYVRNGPNEHPG---AKYVIRDTGERIDLRYHKRAGDIALQYGW 243

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 244  KVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS ETRAE+ ++ +VP  I++PQSN+P MGIVQDTL G RK+TKRD+FI+ +  MNIL
Sbjct: 304  VPQSEETRAELSQICLVPLQIITPQSNKPCMGIVQDTLCGIRKLTKRDSFIDYEHMMNIL 363

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLV 613
             W   ++G VP+P I+KP+PLWTGKQ+    IP  I++ R        DK  L+  D  +
Sbjct: 364  FWIPGWNGVVPEPAIVKPKPLWTGKQIIAQCIPDGIHIRRL-------DKSPLSPEDDGM 416

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
             I KGE++ G + KKT+G S G LI VI+ E GP+  R F G+ Q +VN+WLL N FSIG
Sbjct: 417  LIVKGEIMYGVINKKTIGASAGGLIDVIFREKGPEKCRDFFGNIQKVVNFWLLHNGFSIG 476

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGDTIAD  TM  I +TIS+AK+ V+ +I  AQ   LE E G T+ ESFE  V++ LN A
Sbjct: 477  IGDTIADGATMRHITETISEAKSKVQEIINAAQLNKLEREQGMTLRESFEQNVSRTLNQA 536

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RD AG SA+KSL E NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIP+GF DRTLP
Sbjct: 537  RDNAGKSAEKSLKELNNVKQMVISGSKGSFINISQMSACVGQQIVEGKRIPYGFADRTLP 596

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HFTKDDY PES+GF+ENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+
Sbjct: 597  HFTKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 656

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN 913
            ED+MV+YDGTVRNSLGD++QF+YGEDG+DSV +E+Q +DS+    + F++ +R ++ + N
Sbjct: 657  EDVMVQYDGTVRNSLGDILQFVYGEDGLDSVKVENQQIDSIPGDNNAFERRYRVDLMDFN 716

Query: 914  WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLI 973
             +    L E  +D+    EL+   D E  +L  DR  L        DS W LPVNLKR+I
Sbjct: 717  KSLKPSLIESANDIFGDIELQRFLDEEYDQLWGDRQFLRDGNFPGSDSGWHLPVNLKRVI 776

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
             NAQ+ F VD  + S++  +E++  V  L ERL VV G D L++EAQ NAT+ F  +LRS
Sbjct: 777  LNAQQIFNVDLNKASNLTVLEIITGVRGLTERLTVVRGTDELTIEAQNNATILFKCMLRS 836

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
             F+ KRV++E+ L R +FEW +GE+ES+F +SLV
Sbjct: 837  VFSVKRVIEEYHLNRASFEWALGEVESQFARSLV 870


>gi|397135977|gb|AFO11483.1| RNA polymerase I, partial [Schizosaccharomyces pombe]
          Length = 868

 Score = 1035 bits (2677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/884 (58%), Positives = 652/884 (73%), Gaps = 28/884 (3%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN D    PE    K+ ++AE +L V K IS ED   LG N  ++RP+WMIL VLP+PPP
Sbjct: 2    KNADDSDQPE----KRIISAEEILNVFKHISPEDGWRLGFNEDFSRPEWMILTVLPVPPP 57

Query: 255  PV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
            PV          R  DDLT++L  I++ N N+++ E NG+P H+I E   LLQFH+ATY 
Sbjct: 58   PVRPSISFNESQRGEDDLTYKLGDILKANINVQKLEINGSPQHVIQESESLLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ G       SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D+L
Sbjct: 118  DNDIAGXXXXXXXSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEL 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPETVTPYNI +L+ELV  GP   PG   AKYIIRD G+R+DLRY K++
Sbjct: 178  GVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPG---AKYIIRDTGERIDLRYHKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L  G++VERH+ DGD V+FNRQPSLHKMS+MGHRI++MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMNMHVPQS ETRAE+ E+ MVPK IVSPQSN+PVMGIVQDTL G RK + RD F+
Sbjct: 295  FDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFL 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
             ++  MNI++W  D+DG +P P ILKP+ LWTGKQ+ +LIIPK INL R      D+DK 
Sbjct: 355  TRNAVMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGINLIR------DDDKQ 408

Query: 605  ILTA-GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
             L+   D+ + IE GE++ G + KKT+G S G L+H IW+E GP+  + F    Q +VNY
Sbjct: 409  SLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNY 468

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            WLL N FSIGIGDTIADA TM+ +  T+ +A+  V   I+ AQ   L+PEPG T+ ESFE
Sbjct: 469  WLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFE 528

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
             KV+++LN ARD AG SA+ SL +SNN+K MV AGSKGSFINISQM+ACVGQQ VEGKRI
Sbjct: 529  AKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRI 588

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
            PFGF  RTLPHF KDD  PESRGF+ENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETG
Sbjct: 589  PFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 648

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRRLVKAMED+MV+YDGTVRN++GD+IQF YGEDG+D+  +E Q  DSL++   +F+K
Sbjct: 649  YIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQVFDSLRLSTKQFEK 708

Query: 904  AFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
             +R ++ E+     YM     +D      ++D+ D E  +L ADR  L   I   GD+ W
Sbjct: 709  KYRIDLMEDRSLSLYMENSIEND----SSVQDLLDEEYTQLVADRELLCKFIFPKGDARW 764

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNA 1023
            PLPVN++R+I NA + F ++ ++P+D+ P +++  +++L  +L +  G D ++ + Q NA
Sbjct: 765  PLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFRGSDRITRDVQNNA 824

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            TL F ILLRS FA KRV+ E+RL + AFEW++GE+E+RF Q++V
Sbjct: 825  TLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVV 868


>gi|397135940|gb|AFO11465.1| RNA polymerase I, partial [Spencermartinsiella europaea]
          Length = 868

 Score = 1035 bits (2677), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/864 (59%), Positives = 644/864 (74%), Gaps = 18/864 (2%)

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP----------PPVRP 258
            K+ LT   +L VLK IS +D   LGL+  YARP+W+++ VLP+PP             R 
Sbjct: 12   KRLLTPTEILNVLKHISPQDTHRLGLSEDYARPEWLVITVLPVPPPPVRPSIAINETARG 71

Query: 259  SDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRS 318
             DDLT++LA I++ N N+ R E+ GAPAH+I+EF  LLQ+H+ATY DN++ GQPRA Q+S
Sbjct: 72   EDDLTYKLADILKANSNVERCEQEGAPAHVINEFEALLQYHVATYMDNDIAGQPRALQKS 131

Query: 319  GRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPE 378
            GRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++DQ+GVP SIA  LTYPE
Sbjct: 132  GRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPKSIARTLTYPE 191

Query: 379  TVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERH 438
             VTPYNI+RL ELV  GP+  PG   AKYIIRD G+R+DLRY K++ D  L+ G+KVERH
Sbjct: 192  IVTPYNIQRLTELVRNGPNEHPG---AKYIIRDTGERIDLRYHKRAGDIALQYGWKVERH 248

Query: 439  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
            + D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS 
Sbjct: 249  IVDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 308

Query: 499  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
            ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+TKRDTFI+ +  MNIL+W   
Sbjct: 309  ETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTKRDTFIDYEQVMNILLWIPG 368

Query: 559  FDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKG 618
            +DG VPQP ILKPRP+WTGKQ+ ++ IP  I L R      D+   I +  D  + I+KG
Sbjct: 369  WDGVVPQPAILKPRPMWTGKQMVSMTIPSGIFLQR-----FDDGNPISSPKDNGMLIQKG 423

Query: 619  ELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            E++ G + KKT+G + G LIH I  E GP     F G+ Q +VNYWLL N FSIGIGDTI
Sbjct: 424  EIIYGVVDKKTVGATGGGLIHTIMREKGPKVCAGFFGNIQKVVNYWLLHNGFSIGIGDTI 483

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
            AD  TM  I +TIS+AK  V+ +I +AQ   L PEPG T+ ESFE+ V++VLN ARD AG
Sbjct: 484  ADGATMRDIANTISEAKQKVQEIILEAQSNKLSPEPGMTLRESFEHNVSRVLNQARDNAG 543

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
             SA+ SL E NN+K MV AGSKGSFINIS M+ACVGQQ VEGKRIPFGF DR+LPHFTKD
Sbjct: 544  RSAEMSLKELNNVKQMVVAGSKGSFINISLMSACVGQQIVEGKRIPFGFGDRSLPHFTKD 603

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
            DY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+EDIMV
Sbjct: 604  DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMV 663

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNY 918
            +YDGT RNSLGDVIQF+YGEDG+D   +E QT+D++      FD+ +R +  + + +   
Sbjct: 664  QYDGTTRNSLGDVIQFVYGEDGLDGTQVEKQTVDTIPGSHDAFDRKYRIDRMDSSKSLRP 723

Query: 919  MLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQK 978
             L E  +D+    +L+ + D E  +L+ DR  L   +   GD +WPLPVN++R++ NAQ+
Sbjct: 724  SLLESGNDILGDVDLQRILDEEYDQLQNDRKTLREFVFPEGDHNWPLPVNVRRIVQNAQQ 783

Query: 979  TFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASK 1038
             F +DP + SD+   E+VE V KL ++L VV G+  +  EAQ+NA+  F  L+RS  AS+
Sbjct: 784  IFNIDPSKASDLTLGEIVEDVKKLCDKLIVVRGKGEILEEAQENASYLFRCLIRSRLASR 843

Query: 1039 RVLKEHRLTREAFEWVIGEIESRF 1062
            RV++E+RL R AFEWV+GEIE++ 
Sbjct: 844  RVIEEYRLNRLAFEWVLGEIETQL 867


>gi|397135860|gb|AFO11425.1| RNA polymerase I, partial [Kregervanrija fluxuum]
          Length = 870

 Score = 1033 bits (2672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/882 (58%), Positives = 662/882 (75%), Gaps = 23/882 (2%)

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
            N D+E   E +ERKQ + A  +L VLK IS EDC+ LG N ++ARP+WMIL VLP+PPPP
Sbjct: 2    NMDEE--TENLERKQ-VHASDILNVLKHISPEDCKKLGFNEEWARPEWMILTVLPVPPPP 58

Query: 256  V----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
            V          R  DDLT++LA I++ N N+++ E +G+P H+ISEF  LLQ+H+ATY D
Sbjct: 59   VRPSVAFTDSKRSEDDLTYKLADILKANINVQKFEMDGSPQHVISEFEALLQYHVATYMD 118

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            N++ GQP+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP + +DQ+G
Sbjct: 119  NDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVG 178

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP SIA  L+YPE VTPYNI++L E+V  GP+  PG   AKY+IRD G R+DLR+ K++ 
Sbjct: 179  VPISIAKTLSYPEIVTPYNIQKLTEMVRNGPNEHPG---AKYVIRDSGDRIDLRFNKRAG 235

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
            D  L+ G+KVERHL D D VLFNRQPSLHKMS+M H++K+MPYSTFR+NLSVTSPYNADF
Sbjct: 236  DIQLQYGWKVERHLMDNDPVLFNRQPSLHKMSMMCHKVKVMPYSTFRMNLSVTSPYNADF 295

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS+ETRAE+ +L  VP  IVSPQSN+PVMGIVQDTL G RK+T RD F+E
Sbjct: 296  DGDEMNLHVPQSYETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFLE 355

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGI 605
             D  MNI  W  ++DG VPQP ILKP+PLW+GKQV +L IPK I L R        D  +
Sbjct: 356  YDQVMNICFWIPNWDGVVPQPAILKPKPLWSGKQVLSLCIPKGIFLQRL-------DGSL 408

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
            L+  D+ + I  GE++ G + K T+G S G LIH    E GP+   K  G+ Q +VN+WL
Sbjct: 409  LSPKDSGMLIVNGEIMFGVVNKATVGASAGGLIHTTMREKGPEVCAKMFGNIQKVVNFWL 468

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGD IAD +TM+TI +TI  AK  V+ +I+ AQ   LEPEPG T+ ESFE K
Sbjct: 469  LHNGFSIGIGDAIADPETMKTITETIDVAKEKVQVVIRDAQHNLLEPEPGMTVRESFEQK 528

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            V+++LN ARD AG SA+ SL +SNN+K MVTAGSKGS+INISQM+ACVGQQ VEGKRI F
Sbjct: 529  VSKILNEARDAAGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRIHF 588

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF DR+LPHFTKDDY  ES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 589  GFSDRSLPHFTKDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 648

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRL+KA+EDIMV YDGT RNSLGDVIQF+YGEDG+D+  +E QT+D++    SEF++ +
Sbjct: 649  QRRLLKALEDIMVHYDGTTRNSLGDVIQFIYGEDGLDATSVEKQTVDTIPGSTSEFERKY 708

Query: 906  RFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL 965
            R ++ + + +    L EY  ++    +L+ + D E ++L  DR  L T +  +GD++WPL
Sbjct: 709  RIDLMDSSKSLRPDLVEYGSEILGDIKLQKILDEEYEQLLKDREYLRTVVFPNGDNNWPL 768

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
            PVN++R+I NAQ+ F VD  + +D+   E+V+ V +L +R  VV G+  +  EAQ+NATL
Sbjct: 769  PVNIRRVIQNAQQVFHVDQYKATDLTITEIVKGVQELCKRFIVVRGKGGVLNEAQQNATL 828

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
             F  L+RS  A++R+++E RL ++AFEWV+G IE +F +SLV
Sbjct: 829  LFQCLVRSRLATRRIIEEFRLNKDAFEWVLGTIEQQFARSLV 870


>gi|397135812|gb|AFO11401.1| RNA polymerase I, partial [Ogataea minuta]
          Length = 870

 Score = 1033 bits (2670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/878 (58%), Positives = 658/878 (74%), Gaps = 29/878 (3%)

Query: 204  EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------- 256
            +  ER+Q ++A  VL + K IS EDC  LG N  YARP+WM++ VLP+PPPPV       
Sbjct: 8    DQAERRQ-ISAAEVLNIFKHISPEDCYKLGFNEDYARPEWMLITVLPVPPPPVRPSVAFT 66

Query: 257  ---RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++LA I++ N N++R E +G+P H++SEF  LLQ+H+ATY DN++ GQP+
Sbjct: 67   DSKRSEDDLTYKLADILKANINVQRCEMDGSPQHVVSEFEALLQYHVATYMDNDIAGQPQ 126

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+GVP SIA  
Sbjct: 127  ALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKV 186

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPE VTPYNI++L ELV  GP+  PG   AKY+IRD G R+DLRY K++ D  L+ G+
Sbjct: 187  LTYPEIVTPYNIQKLTELVLNGPNEHPG---AKYVIRDSGDRIDLRYNKRAGDIQLQYGW 243

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFR+NLSVTSPYNADFDGDEMN+H
Sbjct: 244  KVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLH 303

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS+ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD+FIE D  MN+ 
Sbjct: 304  VPQSYETRAELEQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIEYDQVMNMC 363

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLV 613
             W  ++DG VPQP ILKP+PLW+GKQV ++ IP+ I L R        D  +L+  D+ +
Sbjct: 364  FWIPNWDGVVPQPAILKPKPLWSGKQVLSMCIPQGIFLQRL-------DGSLLSPKDSGM 416

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
             I  GE++ G + K T+G S G LIH +  E GP    +  G+ Q +VNYWLL N FSIG
Sbjct: 417  LIVNGEIMFGVVNKATVGASAGGLIHTVMREKGPQVCAQLFGNIQKVVNYWLLHNGFSIG 476

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGD IAD+ TM+TI +TI+ AK  V+ +I  AQ+  LE EPG T+ ESFE KV+++LN A
Sbjct: 477  IGDAIADSATMKTITETIAIAKEKVQEVIMDAQNNLLEAEPGMTVRESFEQKVSKLLNEA 536

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RD AG SA+ SL +SNN+K MVTAGSKGS+INISQM+ACVGQQ VEGKRI FGF DR+LP
Sbjct: 537  RDSAGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLP 596

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HFTKDDY  ES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRL+KA+
Sbjct: 597  HFTKDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKAL 656

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM--DE 911
            EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E QT+D++      FDK +R ++   E
Sbjct: 657  EDIMVHYDGTTRNSLGDIIQFVYGEDGLDGTQVEKQTVDTIPGSTEAFDKRYRVDLMNVE 716

Query: 912  ENWNPNYML--QEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNL 969
             +  P+ +    E I D+KT    +   D E ++L ADR  L TE  T+G+++WPLPVN+
Sbjct: 717  TSIRPDLVEYGTEIIGDIKT----QIYLDEEYEQLLADREYLRTECFTTGENNWPLPVNI 772

Query: 970  KRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNI 1029
            +R+I NAQ+ F VD  + SD+  +++V+ V +L ++  V+ G+  +  EAQ+NATL F  
Sbjct: 773  RRVIQNAQQIFHVDQTKASDLPIIDIVKGVQELTKKFLVIRGKGDVLSEAQENATLLFQC 832

Query: 1030 LLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L+RS  A++RVL+E RL ++AFEWV+G IE +FL+SLV
Sbjct: 833  LVRSRLATRRVLEEFRLNKDAFEWVLGTIEQQFLKSLV 870


>gi|123979324|gb|ABM81487.1| RNA polymerase II largest subunit [Cladonia stipitata]
          Length = 984

 Score = 1032 bits (2669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/1003 (52%), Positives = 694/1003 (69%), Gaps = 40/1003 (3%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGG--- 150
            FM  +  ++ +VC NC KI   E + KF  AL+ R+PK R   I   CK K  CE     
Sbjct: 1    FMTKIKKLLETVCHNCGKIKLXESNPKFADALRFRDPKKRFDAIWRHCKVKMVCETTVPL 60

Query: 151  DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
            DE D P +  +EP K   GGCG  QP++  EG+++   +K Q+   + + Q PE    K+
Sbjct: 61   DE-DAPPEKQKEP-KHEHGGCGNVQPEIRREGLRLTGTWKPQKGDEETEGQQPE----KK 114

Query: 211  TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP------------VRP 258
             +T +  L + + IS+ED   LGL+  YARP+WMI+ VLP+PPPP            +R 
Sbjct: 115  PITPQMALNIFRHISEEDIATLGLSKDYARPEWMIITVLPVPPPPVRPSISVDGGNGMRG 174

Query: 259  SDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRS 318
             DDLT++L  IIR N N+RR E  G+PAH+++EF QLLQFH+ATY DN++ GQP+A Q+S
Sbjct: 175  EDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKS 234

Query: 319  GRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPE 378
            GRP+K I +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP S+A  LTYPE
Sbjct: 235  GRPVKLIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSVARTLTYPE 294

Query: 379  TVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERH 438
            TVTPYNI +L +LV+ GP+  PG   AKY+IR DG+R+DLR+ K++ +  L+ G+KVERH
Sbjct: 295  TVTPYNIHKLHQLVKNGPNDHPG---AKYVIRADGERIDLRHHKRAGEISLQYGWKVERH 351

Query: 439  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
            + DGDF++FNRQPSLHK S+MGHR+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS 
Sbjct: 352  IVDGDFIIFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 411

Query: 499  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
            ETRAEV +L MVP  IVS Q N P+MGIVQDTL G  K+ +RD F+ K+  MNIL+W  D
Sbjct: 412  ETRAEVNQLCMVPLNIVSSQRNGPLMGIVQDTLCGTYKMCRRDVFMTKEAVMNILLWVPD 471

Query: 559  FDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKG 618
            +DG +PQP I+KPRP+WTGKQ+ +L+IP  +N  +      D  +G     D    I  G
Sbjct: 472  WDGVIPQPAIIKPRPMWTGKQILSLVIPAGLNYMKL-----DETEGFTALTDEGQFIHGG 526

Query: 619  ELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            EL+ G L KK +G +T  +IH+I+ E+G DAA  F    Q +VNYWLL N FSIGIGDTI
Sbjct: 527  ELMFGLLDKKAVGAATQGVIHLIFNELGSDAAMSFFNGAQTVVNYWLLHNGFSIGIGDTI 586

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
             D  T+  I   ++  K  V+ + + AQ   LE  PG  + ++FE+KV+  LN AR+EAG
Sbjct: 587  PDRGTINRIKTVVNAQKQEVEEITQSAQLNELESLPGMNVRDTFESKVSNALNKAREEAG 646

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
               ++SL + NN   M  +GSKG+ INISQMTA VGQQ+VEGKRIPFGF  R+LPHF KD
Sbjct: 647  KVTEESLKDVNNAIQMARSGSKGTNINISQMTAVVGQQSVEGKRIPFGFKYRSLPHFAKD 706

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
            DY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M 
Sbjct: 707  DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMA 766

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD----EENW 914
            KYDGTVRNSLGD++QF+YGEDG+D V IE Q +D + + + +FD+ FR ++     E + 
Sbjct: 767  KYDGTVRNSLGDIVQFVYGEDGLDGVHIERQRVDIITIPRKQFDRIFRVDLMASKPETSI 826

Query: 915  NPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRL 972
             P ++ Q  E + D+KT    +++ D E +++ A R  L        D    LP+N++R+
Sbjct: 827  FPEFLEQANELVGDVKT----QEILDHEYEQVSAAREFLRMNKQNDED-YLQLPINVQRI 881

Query: 973  IWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 1032
            +  A+  FK+     S++HP EV+  V+ L +RL VV G+D LS E Q NATL F   LR
Sbjct: 882  LDTAKSKFKIKNGARSNLHPAEVIPQVEWLLDRLVVVRGDDELSREGQHNATLLFKAQLR 941

Query: 1033 STFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGC 1075
            S  A KR++ E+ L + AF+ V+GEIESRF ++ V PGEM+G 
Sbjct: 942  SRLAFKRLVMENFLNKLAFQHVLGEIESRFCRAAVNPGEMVGV 984


>gi|397135928|gb|AFO11459.1| RNA polymerase I, partial [Nadsonia fulvescens]
          Length = 872

 Score = 1032 bits (2669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/883 (58%), Positives = 647/883 (73%), Gaps = 22/883 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN +    P+    K+ L+   +L V K I+ ED   LGLN  YARP+WMI+ VLP+PPP
Sbjct: 2    KNSEDSDTPD----KRALSPTDILNVFKHITPEDAARLGLNEDYARPEWMIITVLPVPPP 57

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT++LA I++ N N+ R E+ GAP H+I+EF  LLQ+H+ATY 
Sbjct: 58   PVRPSIAINDTARGEDDLTYKLADILKANSNVDRCEQEGAPGHVINEFEALLQYHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP + +DQ+
Sbjct: 118  DNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPE VTPYNI RL E V  GP+  PG   AKY+IRD G+R+DLRY K++
Sbjct: 178  GVPRSIARTLTYPEIVTPYNIHRLTEYVRNGPNEHPG---AKYVIRDTGERIDLRYHKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+++MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQSN+PVMGIVQDTL G RK+T RDTFI
Sbjct: 295  FDGDEMNLHVPQSEETRAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            + +  MNI  W   +DG VP P ILKP+PLWTGKQ+ +L IPK I+L R      D+   
Sbjct: 355  DYEQVMNICFWVPGWDGVVPHPAILKPKPLWTGKQMASLCIPKGIHLQR-----FDDSNP 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            I++  D  + I  G+++ G + KKT+G + G L+H I  E G      F G  Q  VN+W
Sbjct: 410  IISPKDNGMYIVDGQIIYGVVDKKTIGATGGGLVHTIMREKGSQICCNFFGSIQKTVNFW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIADA TM  I +TI++AK  V+ +I  AQ  +L PEPG T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADAGTMRDITNTIAEAKQKVQEIINDAQANTLSPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ SL + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  NVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            +GF DRTLPHFTKDDY PES+GF+ENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  YGFSDRTLPHFTKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+ED+MV+YDGT RNSLGD+IQF+YGEDG+D   +E QT+DS+    + FDK 
Sbjct: 650  IQRRLVKALEDVMVQYDGTTRNSLGDIIQFVYGEDGIDGAQVEKQTIDSIPNSDATFDKR 709

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            +R ++ + + +      E  +D+    EL+ + D E  +L  DR  L TE+   G+ +WP
Sbjct: 710  YRIDLMDNSKSIKSTFLESGNDIMGDIELQKILDREYGRLIEDRNFLRTEVFPDGEHNWP 769

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVN++R+I NAQ  F++D  + SD+   E+VE ++ L  +L ++ G+  L++EAQ NAT
Sbjct: 770  LPVNIRRIIQNAQNIFRIDRSKASDLTLPEIVETIENLGSKLTILRGDSRLAIEAQNNAT 829

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L F  L+RS  ASKR+++E+RL R AF WV GE+ES+F +S+V
Sbjct: 830  LLFQCLVRSRLASKRIIEEYRLNRSAFHWVCGEVESQFARSVV 872


>gi|452819030|gb|EME26138.1| DNA-directed RNA polymerase II subunit A, partial [Galdieria
            sulphuraria]
          Length = 1275

 Score = 1032 bits (2668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/1274 (46%), Positives = 755/1274 (59%), Gaps = 139/1274 (10%)

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL GC   T RD FI +D   N+ M  E FDG++P P I KP+ LWTGKQ+F+   P 
Sbjct: 1    QDTLXGCSLFTXRDVFITRDXXXNLXMHIEGFDGQIPTPAIXKPKELWTGKQLFSXXTP- 59

Query: 588  QINLFRTAAWH---ADNDKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
             +N+ R A  H   +D+D       T  DT V I  GEL+ G + K T+GT  GSLIHV 
Sbjct: 60   NVNIIRFAETHXEESDSDPIFGPDXTIHDTRVVISGGELVCGVIDKSTVGTRAGSLIHVC 119

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            W+E GPDA   F+   Q L+N+WLLQ  FSIGIGDTIAD +T   I  T+  A+     L
Sbjct: 120  WKEHGPDATCDFISSVQLLINHWLLQRGFSIGIGDTIADDETXNYIVRTMEAARQEXTLL 179

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
            I++ Q+  ++ +PG+T MES E+++N V N AR++ GS+A +SL  SNN K M  AGSKG
Sbjct: 180  IEKGQNGEIQCKPGKTXMESXEDQINSVXNQARNKVGSAAARSLPASNNXKRMXNAGSKG 239

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S  NISQ+ A VGQQNVEGKRI +GF  RTLPH+  DD G ESRGFV NSY  G TP EF
Sbjct: 240  STXNISQIMASVGQQNVEGKRIFYGFRRRTLPHYPADDXGAESRGFVFNSYXSGXTPDEF 299

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            F HA  GREG+IDTA KTSETGYIQRR  KAMEDIMV YD TVR+S G  +QFLYGEDGM
Sbjct: 300  FLHAXSGREGIIDTAXKTSETGYIQRRXXKAMEDIMVNYDHTVRDSGGHAVQFLYGEDGM 359

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWN--PN---YMLQEYIDDLKTIKELRDV 936
            D   IE Q + S++    E + A+R +  +  +   PN   Y+  + ++ + +  EL  +
Sbjct: 360  DGAIIERQIIPSMRXSDRELEVAYRMDPFDTRFGQAPNGRRYLEVDVLEAVHSDPELAVL 419

Query: 937  FDAEVQKLEADRYQLATEIA-TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEV 995
             + E + ++ DRY     +   + D+   LP N +RLI N +K F + P   S+++P  V
Sbjct: 420  XNQEFETIKEDRYIXRHSVFPRTDDNRXALPXNXERLIDNTKKIFGIHPNSVSNLNPRAV 479

Query: 996  VEAVDKLQERLKVVP---------------------GEDPLSVEAQKNATLFFNILLRST 1034
            +E    L  R +V                        ED +S E Q NATL F I +R+T
Sbjct: 480  LEGXKLLLRRTRVXALEXELYEQGKDDNTKAHHCSKQEDSISTELQLNATLLFQIHIRAT 539

Query: 1035 FASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFH 1094
             A+KR++  HRL  EAF W++GEIESRFL++ V+PGE  G +AAQSIGEP TQ T NTFH
Sbjct: 540  LATKRIIAFHRLHSEAFSWLLGEIESRFLRAQVSPGEXXGAIAAQSIGEPTTQXTXNTFH 599

Query: 1095 YAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRS 1154
             AGVS KN TLGVPR +E+INVAK  K PSL+V+ K      +E AK V   L+Y T ++
Sbjct: 600  LAGVSEKNXTLGVPRFKEVINVAKNXKKPSLTVYXKGDAARDEEAAKRVXSELQYITXKN 659

Query: 1155 VTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDED--IAPEKISPWLLRIELNREMMVDK 1212
            V   +E++YDPDP  T IEED E  +  Y   D +  +  +++SPW+LR  L R  M D 
Sbjct: 660  VVHYSEIYYDPDPRNTXIEEDTELXEDRYLXXDAEGTMDEKRLSPWVLRFVLLRSNMEDS 719

Query: 1213 KLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM---NDEAPKG--------ELND 1261
            ++    +A + N EF +D  CI++DDNA+KL+LRIR +   ND A +         + +D
Sbjct: 720  RIXXRDIAAQXNNEFGEDXDCIYSDDNAEKLVLRIRXVEAHNDNAKEWTQEENVNEDNDD 779

Query: 1262 ESAEDDVFLKKIESNMLTEMALRGV----------------------------------- 1286
            E   D+ F KK+E+++ T +  RG+                                   
Sbjct: 780  EXTNDERFXKKVEAHLXTNLHXRGIPGIHRAYMRXTKXKQVDLHTGSFXTTDEWVLDTEG 839

Query: 1287 -NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAI 1345
             NLLAV+ H   DARRT SN + E+ E+ G+EA R  LL E+R V+   G   NYRH AI
Sbjct: 840  TNLLAVLSHPAXDARRTXSNDVXEVYEIXGVEAARALLLSEIRAVMEPYGXDXNYRHXAI 899

Query: 1346 LCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRG-VTENIM 1404
            L D  T+RG L + TRHG NR + G + + SFEETVDILL+AA F E D  R  VTENI 
Sbjct: 900  LADXXTHRGFLQSXTRHGXNRVERGALAKSSFEETVDILLEAATFGELDDFRNSVTENIX 959

Query: 1405 LGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPA--RSPVS--GTPYHDGM 1460
            +GQ+   GTG   +  N+E           +  +  +  M P+  R+P    GTP  +G+
Sbjct: 960  MGQMCNFGTGSFGVLXNEEAXIREEXRDXSTIWQDTQNFMAPSWERTPGHEPGTPRGEGI 1019

Query: 1461 MSPGYL-----FSPNLRLSPVTDAQFSPYVG----GMAFSPTSSPGYSPS---------- 1501
              P        FSP   ++   + QFSPY G      +FSP  S                
Sbjct: 1020 FDPAATPLYGSFSPKTSINYSGNLQFSPYTGDGISNYSFSPNRSSFQFSPSSPGHXGMGI 1079

Query: 1502 SPGYSPSSP----GYSPTSPGYSPTSPG------YSPTSPGYSPTSP--TYSPSSPGYSP 1549
            SP YSPSSP    G SPTSP YSPTSPG      YSPTSP YSPTSP   YSPSSP YSP
Sbjct: 1080 SPLYSPSSPMXEHGSSPTSPAYSPTSPGXXSGQRYSPTSPAYSPTSPGIRYSPSSPAYSP 1139

Query: 1550 TSPA------YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-------- 1595
            TSPA      YSPTSP+YSPTSP+Y P SP+YSPTSP YSPTSP+ S  + S        
Sbjct: 1140 TSPANGLSARYSPTSPAYSPTSPAYMPRSPAYSPTSPGYSPTSPAXSRVAESGHHNGGTQ 1199

Query: 1596 ------YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
                  YSP SP+YSP SPAYSP SPAYSP SPAYSP SP+YSP SP+YSP SP+YSP S
Sbjct: 1200 GGEAWIYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKS 1259

Query: 1650 PSYSPTSPSYSPTS 1663
            P+YSP SP+YSP S
Sbjct: 1260 PAYSPKSPAYSPHS 1273



 Score =  186 bits (472), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 142/290 (48%), Positives = 169/290 (58%), Gaps = 54/290 (18%)

Query: 1530 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSP-TSPSYSPTSPSYSP------TSPSY 1582
            +PG+ P +P       G     PA +P   S+SP TS +YS  +  +SP      ++ S+
Sbjct: 1006 TPGHEPGTPR------GEGIFDPAATPLYGSFSPKTSINYS-GNLQFSPYTGDGISNYSF 1058

Query: 1583 SPTSPSYSPT-----------SPSYSPTSP----SYSPTSPAYSPTSPA------YSPTS 1621
            SP   S+  +           SP YSP+SP      SPTSPAYSPTSP       YSPTS
Sbjct: 1059 SPNRSSFQFSPSSPGHXGMGISPLYSPSSPMXEHGSSPTSPAYSPTSPGXXSGQRYSPTS 1118

Query: 1622 PAYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
            PAYSPTSP   YSP+SP+YSPTSP+ +  S  YSPTSP+YSPTSPAY P SP YSPTSP 
Sbjct: 1119 PAYSPTSPGIRYSPSSPAYSPTSPA-NGLSARYSPTSPAYSPTSPAYMPRSPAYSPTSPG 1177

Query: 1680 YSPTSPTYSPTSPS-YNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTS 1738
            YSPTSP  S  + S ++    +   +  YSP SP       YSP SP YSP S +YSP S
Sbjct: 1178 YSPTSPAXSRVAESGHHNGGTQGGEAWIYSPKSP------AYSPKSPAYSPKSPAYSPKS 1231

Query: 1739 PSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP-SAGYSPSAPGYSPSS 1787
            P+YSP SP YSP SP         YSP SP YSP S  YSP +P YSP S
Sbjct: 1232 PAYSPKSPAYSPKSPA--------YSPKSPAYSPKSPAYSPKSPAYSPHS 1273



 Score =  120 bits (300), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/179 (48%), Positives = 101/179 (56%), Gaps = 45/179 (25%)

Query: 1649 SPSYSPTSP----SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
            SP YSP+SP      SPTSPAYSPTSPG   +   YSPTSP YSPTSP            
Sbjct: 1080 SPLYSPSSPMXEHGSSPTSPAYSPTSPGXX-SGQRYSPTSPAYSPTSPG----------- 1127

Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP----------- 1753
            + YSPSSP  SP SP +  S  YSPTS +YSPTSP+Y P SP YSP+SP           
Sbjct: 1128 IRYSPSSPAYSPTSPANGLSARYSPTSPAYSPTSPAYMPRSPAYSPTSPGYSPTSPAXSR 1187

Query: 1754 ------YNAG--GG--------NPDYSPSSPQYSP-SAGYSPSAPGYSPSSTSQYTPQT 1795
                  +N G  GG        +P YSP SP YSP S  YSP +P YSP S + Y+P++
Sbjct: 1188 VAESGHHNGGTQGGEAWIYSPKSPAYSPKSPAYSPKSPAYSPKSPAYSPKSPA-YSPKS 1245


>gi|397135956|gb|AFO11473.1| RNA polymerase I, partial [Komagataella pastoris]
          Length = 872

 Score = 1032 bits (2668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/880 (57%), Positives = 645/880 (73%), Gaps = 22/880 (2%)

Query: 198  DQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVR 257
            D++  PE    ++ LT   +L V + IS EDC  LG N  YARP+WMI+ VLP+PPP VR
Sbjct: 5    DRDAQPE----RKLLTPGEILNVFRHISPEDCFRLGFNEDYARPEWMIITVLPVPPPQVR 60

Query: 258  PS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNE 307
            PS          DDLTH+L+ I++ N N+++ E +G+P HII+E  QLLQFH+ATY DN+
Sbjct: 61   PSIAMDETTQGQDDLTHKLSDILKANINVQKLEMDGSPQHIINEVEQLLQFHVATYMDND 120

Query: 308  LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 367
            + GQP+A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVI+ DP + +DQ+GVP
Sbjct: 121  IAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVP 180

Query: 368  WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 427
             SIA  L+YPETVT YNI RL E V  GP+  PG   AKY+IRD+G R+DLRY K++ D 
Sbjct: 181  ISIAKTLSYPETVTQYNIHRLTEYVRNGPNEHPG---AKYVIRDNGDRIDLRYHKRAGDI 237

Query: 428  HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDG 487
             L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDG
Sbjct: 238  VLQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDG 297

Query: 488  DEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
            DEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+PVMGIVQDTL G RK+T RDTFIE +
Sbjct: 298  DEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFIEYE 357

Query: 548  VFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILT 607
              MN+L W   +DG VPQP I+KP+PLWTGKQ+ ++ IP  I+L RT     D    +L+
Sbjct: 358  QVMNMLFWVPSWDGVVPQPAIMKPKPLWTGKQLLSIAIPSGIHLQRT-----DGGNSLLS 412

Query: 608  AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 667
              D  + I  G ++ G + KKT+G+  G LIH +  E GP    +  G+ Q +VNYWLL 
Sbjct: 413  PKDNGMLIVDGNVMFGVVDKKTVGSGGGGLIHTVMREKGPKICAELFGNIQKVVNYWLLH 472

Query: 668  NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVN 727
            N FSIGIGD IADA TM+ I   IS AK  V+ +I +AQ   LE +PG T+ ESFE +V+
Sbjct: 473  NGFSIGIGDAIADASTMKEITHAISSAKEQVQEIIYKAQHNELELKPGMTLRESFEGEVS 532

Query: 728  QVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 787
            + LN ARD AG SA+ +L + NN+K MV+AGSKGSFINI+QM+ACVGQQ VEGKRI FGF
Sbjct: 533  RTLNDARDSAGRSAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQMVEGKRIAFGF 592

Query: 788  VDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQR 847
             DR+LPHFTKDD+ PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQR
Sbjct: 593  ADRSLPHFTKDDFSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQR 652

Query: 848  RLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF 907
            RLVKA+EDIMV YDGT RNSLGD+IQFLYGEDG+D   +E QT+D++      F K +  
Sbjct: 653  RLVKALEDIMVHYDGTTRNSLGDIIQFLYGEDGLDGTQVERQTIDTIPGSDKAFHKRYYV 712

Query: 908  EMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPV 967
            ++ +E  +    + EY  D+    EL+   ++E ++L  DR  L   +  +GD +WPLPV
Sbjct: 713  DLMDEKNSIKADVIEYAADIIGDVELQKELNSEYEQLVNDRKFLREIVFVNGDHNWPLPV 772

Query: 968  NLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFF 1027
            NL+R+I NAQ+ F +D  + SD+   E++  V  L ++L V+ GE+ L  EAQ+NAT  F
Sbjct: 773  NLRRIIQNAQQIFHLDRAKASDLTIPEIIHGVRDLCKKLFVLRGENELIKEAQQNATSLF 832

Query: 1028 NILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
              L+R+  A++R+L+E RL R+AFEWV+G IE++F +SLV
Sbjct: 833  QCLVRARLATRRILEEFRLNRDAFEWVLGTIEAQFQRSLV 872


>gi|119643566|gb|ABL85577.1| RNA polymerase II largest subunit [Hypotrachyna degelii]
          Length = 925

 Score = 1031 bits (2666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/945 (55%), Positives = 682/945 (72%), Gaps = 40/945 (4%)

Query: 165  KKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRI 224
            K + GGCG  QP++  EG+++   +KAQ+   +++ Q PE    K+ +T +  L + + I
Sbjct: 1    KHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENEGQQPE----KKPITPQMALNIFRHI 56

Query: 225  SDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------------RPSDDLTHQLAMIIRH 272
            S ED + +GL+  YARP+WMI+ VLP+PPPPV            R  DDLT++L  IIR 
Sbjct: 57   STEDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLGDIIRA 116

Query: 273  NENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAK 332
            N N+RR E  G+PAH+++EF QLLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK K
Sbjct: 117  NGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGK 176

Query: 333  EGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELV 392
            EGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPETVTPYNI++L +LV
Sbjct: 177  EGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLV 236

Query: 393  EYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPS 452
            + GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KV RH+ DGD+++FNRQ  
Sbjct: 237  KNGPNEHPG---AKYVIRDTGERIDLRHHKRAGEISLQYGWKVXRHIVDGDYIIFNRQLX 293

Query: 453  LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPK 512
             HK S+MGHR+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L MVP 
Sbjct: 294  XHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPL 353

Query: 513  CIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPR 572
             IVSPQ N P+MGIVQDTL G  K+ +RD F+ K+  MNIL+W  D+DG +PQP I+KP 
Sbjct: 354  NIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPL 413

Query: 573  PLWTGKQVFNLIIPKQINLFRTA--AWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTL 630
             +WTGKQ+ +L+IP  +NL R +   +   ND G+L +G        GEL+ G L KKT+
Sbjct: 414  AMWTGKQILSLVIPTGLNLLRGSEEGFSPLNDDGLLISG--------GELMYGLLNKKTV 465

Query: 631  GTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDT 690
            G S G +IH+++ E GP+AA  F    Q +VNYWLL N FSIGIGDTI D  T++ I + 
Sbjct: 466  GASPGGVIHIVFNEKGPEAAMDFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHTIQQIENA 525

Query: 691  ISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNN 750
            ++  K  V  + + A +  LE  PG  + E+FE+KV++ LN ARD+AG+  +KSL + NN
Sbjct: 526  VNNQKAEVLEITRSATENELESLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNN 585

Query: 751  LKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVEN 810
               M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVEN
Sbjct: 586  ATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVEN 645

Query: 811  SYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD 870
            SYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD
Sbjct: 646  SYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGD 705

Query: 871  VIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD---EENWNPNYMLQ--EYI 924
            ++QF+YGEDG+D V IE Q +D +     +F++ FR + MD   E + + +++ Q  E I
Sbjct: 706  IVQFVYGEDGLDGVHIEQQRVDIIACSTKQFERKFRIDLMDSKPETSISLDFLEQATEMI 765

Query: 925  DDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDP 984
             D++T K L    D E ++LE DR +L        + +  LP+N+ R++  A+ TFK+  
Sbjct: 766  GDVETQKHL----DNEYRQLEKDRAELRKNRQDDAE-NLQLPLNVIRILDTAKTTFKIKN 820

Query: 985  RRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEH 1044
               S++HP EV+  V  L +RL VV G D LS EAQ NATL F I LRS  A KR++ E+
Sbjct: 821  GARSNLHPAEVIPQVQDLLDRLVVVRGTDKLSEEAQHNATLLFKIQLRSRLAFKRLVMEN 880

Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1089
             L + AF+ V+GEIESRF ++ V PGEM+G +AAQSIGEPATQMT
Sbjct: 881  SLNKLAFQHVLGEIESRFCRAAVNPGEMVGVLAAQSIGEPATQMT 925


>gi|119643869|gb|ABL85591.1| RNA polymerase II largest subunit [Degelia plumbea]
          Length = 1002

 Score = 1031 bits (2666), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/973 (54%), Positives = 682/973 (70%), Gaps = 36/973 (3%)

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            F  AL+ R+PK R   I   CK K  CE     +    D     K + GGCG  QP++  
Sbjct: 48   FADALRYRDPKRRFDAIWRLCKPKMTCETASAAEDDNIDKSREPKHDHGGCGNIQPEVRR 107

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EG+++   +KAQ+   +++ Q PE    K+ +T +  L + + IS E+ + +GL+  YAR
Sbjct: 108  EGLRLNGTWKAQKGDEENEGQQPE----KKPITPQMALNIFRHISTEEIKKMGLSNDYAR 163

Query: 241  PDWMILQVLPIPPPP------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            P+WMI+ VLP+PPPP            +R  DDLT++L  IIR N N+RR E  G+PAH+
Sbjct: 164  PEWMIITVLPVPPPPVRPSISVDGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHV 223

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            + EF QLLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFS
Sbjct: 224  VMEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFS 283

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVIT DP +++D++GVP SIA  LTYPETVTPYNI++L +LV+ GP+  PG   AKY+
Sbjct: 284  ARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG---AKYV 340

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IR+ G+R+DLR+ K++ +  L+ G+KVERH+ DGDF++FNRQPSLHK S+MGHR+++MPY
Sbjct: 341  IRESGERIDLRHHKRAGEISLQYGWKVERHIIDGDFIIFNRQPSLHKESMMGHRVRVMPY 400

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQ
Sbjct: 401  STFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIVQ 460

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL G  K+ +RD F+ K+  MNIL+W  D+DG +PQP ILKPRP WTGKQ+ +L+IP  
Sbjct: 461  DTLCGIYKLCRRDVFLSKEQVMNILLWIPDWDGILPQPAILKPRPKWTGKQIISLVIPSG 520

Query: 589  INLFRTAA--WHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            +NL R     +   ND G+L +G        G+L+ G L KK++G ++  +IH+I+ E G
Sbjct: 521  LNLTRAGGEGFSPLNDDGLLVSG--------GKLMYGLLSKKSVGATSSGIIHIIFNEKG 572

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
            P+ A KF    Q +VNYWLL N FSIGIGDTI D  T++ I D ++K K +V  + + A 
Sbjct: 573  PEVAMKFFNGAQTVVNYWLLHNGFSIGIGDTIPDRGTIKQIKDAVNKQKEDVAVITQSAT 632

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
               LEP PG  + E+FE+KV++ LN ARD+AG+  +KSL + NN   M  +GSKGS INI
Sbjct: 633  ANELEPLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMALSGSKGSTINI 692

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM
Sbjct: 693  SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 752

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
             GREGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D+V I
Sbjct: 753  AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDAVHI 812

Query: 887  ESQTLDSLKMKKSEFDKAFRFE-MD---EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQ 942
            ESQ +D +     +F K FR + MD   E + +  ++  E + D+     L+   D E  
Sbjct: 813  ESQRVDIITCSDEQFKKKFRVDLMDPRPETSISSEFL--EQVQDMLGDSHLQAYLDEEYD 870

Query: 943  KLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            +L+A R  L        D    LP+N+ R++  A+ TFK+     S++HP +VV  V  L
Sbjct: 871  QLKAAREFLRVNKQDDND-QLQLPINVIRILDTAKTTFKIKDGARSNLHPSDVVPQVQNL 929

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
             ERL VV G+D LS E Q NATL F   LRS  A KR++ E  L + AF+ V+GEIESRF
Sbjct: 930  LERLIVVRGDDALSKEGQHNATLLFKAQLRSRLAFKRLVMESSLNKLAFQHVLGEIESRF 989

Query: 1063 LQSLVAPGEMIGC 1075
             ++ V PGEM+G 
Sbjct: 990  CRAAVNPGEMVGV 1002


>gi|397135818|gb|AFO11404.1| RNA polymerase I, partial [Kuraishia capsulata]
          Length = 870

 Score = 1031 bits (2665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/874 (59%), Positives = 647/874 (74%), Gaps = 21/874 (2%)

Query: 204  EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------- 256
            E  ER+  +TA  VL V + IS +DCQ LG N  YARP+WM++ VLP+PPPPV       
Sbjct: 8    EQTERR-LITAAEVLNVFRHISPQDCQRLGFNEDYARPEWMLITVLPVPPPPVRPSVAFT 66

Query: 257  ---RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++LA I++ N N+++ E +G+P H+ISEF  LLQ+H+ATY DN++ GQP+
Sbjct: 67   DTKRGEDDLTYKLADILKANINVQKLEMDGSPQHVISEFEALLQYHVATYMDNDIAGQPQ 126

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP + +DQ+GVP SIA  
Sbjct: 127  ALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIART 186

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            L+YPETVTPYNI++L E V  GP+  PG   AKY+IRD G R+DLRY K++ D  L+ G+
Sbjct: 187  LSYPETVTPYNIQKLTEYVRNGPNEHPG---AKYVIRDSGDRIDLRYNKRAGDIALQYGW 243

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFR+NLSVTSPYNADFDGDEMN+H
Sbjct: 244  KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLH 303

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD FIE D  MN+L
Sbjct: 304  VPQSEETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNML 363

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLV 613
             W   +DG +PQP ILKP+PLW+GKQ+ +  IPK I L R        D  +L+  D+ +
Sbjct: 364  FWIPQWDGVIPQPAILKPKPLWSGKQLLSTCIPKGIYLQRF-------DGSLLSPKDSGM 416

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
             I  GE++ G + K T+G + G LIH +  E GP    +  G+ Q +VNYWLL N FSIG
Sbjct: 417  LIVNGEIMFGVVNKATVGATAGGLIHTVMREKGPQVCAQLFGNIQKVVNYWLLHNGFSIG 476

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGD IAD +TM  I +TI +AK  V+N+I  AQ   LEPEPG T+ ESFE KV++VLN A
Sbjct: 477  IGDAIADRETMRVITETIGEAKEKVQNIILDAQRNLLEPEPGMTVRESFEQKVSKVLNEA 536

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RD AG SA+ SL +SNN+K MVTAGSKGS+INISQM+ACVGQQ VEGKRI FGF DR+LP
Sbjct: 537  RDSAGKSAELSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRISFGFADRSLP 596

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HFTKDDY  ES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRL+KA+
Sbjct: 597  HFTKDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKAL 656

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN 913
            EDIMV YDGT RNSLGDVIQFLYGEDG+D   +E QT+D++      F+K +R ++   +
Sbjct: 657  EDIMVHYDGTARNSLGDVIQFLYGEDGIDGTQVEKQTVDTIPGTDDAFEKRYRVDLMNAS 716

Query: 914  WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLI 973
                  L EY  ++    EL+ + D E  +L  DR  L     ++GD +WPLPVN++R+I
Sbjct: 717  QGIKPELVEYGTEILGSVELQKLLDEEYTQLLEDRKYLRDVCFSNGDYNWPLPVNIRRII 776

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
             NAQ+ F VD  + SD+   ++V+ V +L +RL VV G+  L  EAQ+NATL F  LLRS
Sbjct: 777  QNAQQIFHVDHAKASDLAIPDIVQGVQELCKRLHVVRGKSELMQEAQRNATLLFQCLLRS 836

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
              A++RVL+E RLT++AF+WV+G IE++F +S+V
Sbjct: 837  RLATRRVLEEFRLTKDAFDWVVGTIEAQFFKSVV 870


>gi|397135806|gb|AFO11398.1| RNA polymerase I, partial [Ogataea angusta]
          Length = 866

 Score = 1029 bits (2660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/880 (58%), Positives = 654/880 (74%), Gaps = 29/880 (3%)

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
            +DD +Q     ER+Q   AE VL + K IS EDC  LG N  YARP+WM++ VLP+PPPP
Sbjct: 4    DDDGDQ----AERRQISAAE-VLNIFKHISPEDCHKLGFNEDYARPEWMLITVLPVPPPP 58

Query: 256  V----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
            V          R  DDLT++LA I++ N N++R E +G+P H+ISEF  LLQ+H+ATY D
Sbjct: 59   VRPSVAFTDSKRSEDDLTYKLADILKANINVQRFEMDGSPQHVISEFEALLQYHVATYMD 118

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            N++ GQP+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+G
Sbjct: 119  NDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVG 178

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP SIA  L+YPE VTPYNI++L ELV  GP+  PG   AKY+IRD G R+DLRY K++ 
Sbjct: 179  VPKSIAKVLSYPEIVTPYNIQKLTELVRNGPNEHPG---AKYVIRDSGDRIDLRYNKRAG 235

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
            D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFR+NLSVTSPYNADF
Sbjct: 236  DIQLQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNADF 295

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS+ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RDTFIE
Sbjct: 296  DGDEMNLHVPQSYETRAELEQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFIE 355

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGI 605
             D  MN+  W  ++DG VPQP ILKP+PLW+GKQV ++ IP+ I L R        D  +
Sbjct: 356  YDQVMNMCFWIPNWDGVVPQPAILKPKPLWSGKQVLSMCIPQGIFLQRL-------DGSL 408

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
            L+  D+ + I  GE++ G + K T+G+S G LIH +  E GP    +  G+ Q +VNYWL
Sbjct: 409  LSPKDSGMLIVNGEIMFGVVNKATVGSSAGGLIHTVMREKGPKVCAQLFGNIQKVVNYWL 468

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGD IAD++TM+TI +TI+ AK  V+ +I  AQ   LE EPG T+ ESFE K
Sbjct: 469  LHNGFSIGIGDAIADSETMKTITETIAIAKEKVQEVIMDAQKNLLEAEPGMTVRESFEQK 528

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            V+++LN ARD AG SA+ SL +SNN+K MVTAGSKGS+INISQM+ACVGQQ VEGKRI F
Sbjct: 529  VSKLLNEARDSAGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINF 588

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF DR+LPHFTKDDY  ES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 589  GFADRSLPHFTKDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 648

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRL+KA+EDIMV YDGT RNSLGDVIQF+YGEDG+D   +E QT+D++      F+K +
Sbjct: 649  QRRLLKALEDIMVHYDGTTRNSLGDVIQFIYGEDGLDGTQVEKQTVDTIPGSTEAFEKRY 708

Query: 906  RFEMD--EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
            R ++   E +  P+  L EY  ++    EL+   D E ++L ADR  L T+  T+G+++W
Sbjct: 709  RVDLMSPETSIRPD--LIEYGAEIIGDIELQKYLDEEYEQLLADREYLRTKCFTTGENNW 766

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNA 1023
            PLPVN++R+I NAQ+ F VD  + SD+   ++V  V +L ++ KV+ G+  +  EAQ+NA
Sbjct: 767  PLPVNIRRVIQNAQQIFHVDQTKASDLPIKDIVVGVQELSKKFKVIRGKGEILAEAQENA 826

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
            TL F  L+RS  A++ VL+E RL + AFEWV+G IE  FL
Sbjct: 827  TLLFQCLVRSRLATRXVLEEFRLNKXAFEWVLGTIEQHFL 866


>gi|321450862|gb|EFX62718.1| hypothetical protein DAPPUDRAFT_67765 [Daphnia pulex]
          Length = 1138

 Score = 1028 bits (2658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 551/1114 (49%), Positives = 743/1114 (66%), Gaps = 56/1114 (5%)

Query: 1    MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLG 58
            MDT    S A +  V+ VQ GILSPDEIR+MSV +  I H    E GK K GGL DPR G
Sbjct: 1    MDTLGSDSKATIRLVKKVQLGILSPDEIRRMSVTEGGIIHPYIYEGGKRKLGGLMDPRQG 60

Query: 59   TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
             + RK KC+TC   + ECPGHFGH+ LAKP++H+GF +  + I+R VC+ CSK+L + ++
Sbjct: 61   VVIRKAKCQTCDGTINECPGHFGHINLAKPVYHVGFFEKTIEILRCVCYYCSKLLVNPNN 120

Query: 119  HKFKQAL--KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQP 176
             KFK+ L      P   +  + D CK    CE G+                 GGCG   P
Sbjct: 121  PKFKEILVKSKDQPLKCMAHVYDLCKGINICEVGN-----------------GGCGRYLP 163

Query: 177  KLT-IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            K+  ++G K+  E+K      D+  Q     E+K  LTAERV  + KRISDEDC +LG++
Sbjct: 164  KIRRLKGFKINGEWK----HVDEDSQ-----EKKIVLTAERVWEIFKRISDEDCAILGMD 214

Query: 236  PKYARPDWMILQVLPIPPPPV---------RPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
            PKYARPDWMI+  LP+PPP V         +  +DLT +LA I+R N  L    ++G   
Sbjct: 215  PKYARPDWMIVTCLPVPPPAVRPAQIIGMDQIENDLTMKLADIVRANNKLLGAVQSG--- 271

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
             I+S   ++LQ HIA+  D++    P     S  P +SI  RL+ ++GRIRGNLMGKRVD
Sbjct: 272  EILSGKTKMLQLHIASMMDSKSTLLPAYYHESTLPTQSIKDRLEGRDGRIRGNLMGKRVD 331

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            F+ARTVITPDP + IDQ+G+P SIA N+T+PE V P+NIE+++ELV+ G    PG   AK
Sbjct: 332  FAARTVITPDPNLRIDQVGIPRSIAQNMTFPERVAPFNIEKMQELVQRGNSQYPG---AK 388

Query: 407  Y-IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            + II+ +G R+DLR+  KS D  LE G  VERH+ DGD V+ NRQPSL K  +MGHR+K+
Sbjct: 389  FCIIKKNGDRIDLRFPSKSPDLRLECGDIVERHICDGDLVVLNRQPSLRKEGVMGHRVKV 448

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            +P STF LN SV + YNA+FDGDEMN+HVPQS ETR+EV  L++  + I++PQ+++PVMG
Sbjct: 449  LPCSTFCLNPSVATAYNANFDGDEMNLHVPQSMETRSEVESLLVSSRLIITPQASKPVMG 508

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
            IVQDTL+G  K+TKRD F+EK+  MN+LM+   +DGK+PQP ILKPRP WT   V ++II
Sbjct: 509  IVQDTLVGAYKLTKRDVFLEKEQMMNLLMFLPTWDGKMPQPAILKPRPQWTAA-VHSIII 567

Query: 586  PKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            P  +N+ RT + H D+ D+G    ++ GDT V IE GEL+ G LCKKTLG S  SL+H+I
Sbjct: 568  PGNVNMMRTHSTHPDDEDEGPYKWISPGDTKVVIENGELVMGILCKKTLGASAASLLHII 627

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E+G +   +F G+ Q ++N WLL    SIGI DT+AD +T   I DTI KAK +V  +
Sbjct: 628  FMELGHEVCGRFYGNIQTVINNWLLYEGHSIGIEDTLADCQTYMGIQDTIQKAKEDVIEI 687

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
            I+++ +  LEP PG T+ ++FEN+VN++LN A+ +A + A+ SL+E NNLKAM  AGS G
Sbjct: 688  IQKSHNDELEPTPGNTLRQTFENQVNRILNNAQQQASALAKNSLTEYNNLKAMAVAGSSG 747

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S I  SQ  ACVGQQNVEG+RIPFGF  RTLPHF KDD GPESRGFVENSYL GLTP EF
Sbjct: 748  SSITTSQAIACVGQQNVEGQRIPFGFRKRTLPHFIKDDNGPESRGFVENSYLTGLTPSEF 807

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            +FHAM GRE LI  A   +ET  I R+LVK ME +MV YDGTVRNS G ++QF YGEDG+
Sbjct: 808  YFHAMAGRELLIYEA--RTETDII-RQLVKGMESVMVHYDGTVRNSAGRLLQFCYGEDGL 864

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
             +  +E Q + ++ +  + F+K F+F+   E+   +   +E   +L +  E+    + E 
Sbjct: 865  AAESVELQKMPTVNLSNTVFEKKFKFDPSNEHNLRSMFNEEITRELTSSAEVITEIEHEW 924

Query: 942  QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
            ++L  DR  L  +I  +G++   LP NL+R+IW+ QK F ++ R P+D+ P+ V++ V  
Sbjct: 925  EQLYKDREAL-RQIFPTGENKVVLPCNLQRMIWDVQKIFHINKRAPTDLSPLRVIQGVRD 983

Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
            L  +  +V GED LS++A +NATL F  L+RST  SKR+ +E+RL+ EAFEW+IG+IE+R
Sbjct: 984  LLAKCVIVVGEDKLSIQANQNATLLFQCLVRSTLCSKRLAEEYRLSSEAFEWLIGKIETR 1043

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1095
            F Q+   PGEM+G +AAQS+G+PAT     T+ Y
Sbjct: 1044 FQQAQAQPGEMVGALAAQSLGQPATMDVDCTWRY 1077


>gi|397135914|gb|AFO11452.1| RNA polymerase I, partial [Cephaloascus fragrans]
          Length = 871

 Score = 1028 bits (2657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/883 (58%), Positives = 651/883 (73%), Gaps = 23/883 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            K+DD EQ PE    ++ LT   +L V K IS EDC  LG N  YARP+WM++ VLP+PPP
Sbjct: 2    KSDDSEQ-PE----RRLLTPSEILNVFKHISVEDCHRLGFNEDYARPEWMLITVLPVPPP 56

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT +LA +I+ N N++R E +G+P H+ISEF  LLQFH+ATY 
Sbjct: 57   PVRPSIAFNDTARGEDDLTFKLADVIKANINVQRLEMDGSPQHVISEFEALLQFHVATYM 116

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP + +DQ+
Sbjct: 117  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQV 176

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  L+YPE VTPYNI RL E V  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 177  GVPRSIARTLSYPEIVTPYNIHRLTEYVINGPNEHPG---AKYVIRDTGDRIDLRYHKRA 233

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 234  GDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 293

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD FI
Sbjct: 294  FDGDEMNLHVPQSPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFI 353

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MNIL W   +DG +P+P ILKP+PLWTGKQ+ ++ IPK I+L R      D+   
Sbjct: 354  EYDQVMNILYWIPGWDGVIPKPAILKPKPLWTGKQMVSMAIPKGIHLQR-----FDDGNS 408

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  DT + I  GE++ G + KKT+G + G LIH +  E GP       G+ Q +VNYW
Sbjct: 409  MLSPKDTGMLIINGEIMFGVVDKKTVGATGGGLIHTVMREKGPAICATLFGNIQKVVNYW 468

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIADA TM  I +TIS+AK  V+ +I +AQ  +L PEPG T+ ESFE+
Sbjct: 469  LLHNGFSIGIGDTIADASTMRDITNTISEAKQKVQEIIIEAQQNTLSPEPGMTLRESFEH 528

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ +L + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 529  NVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIP 588

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 589  FGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 648

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E Q++D++    + F++ 
Sbjct: 649  IQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSIDTISGSDTSFERR 708

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            +R ++ +++ +      E   +++   EL+ V D E  +L  DR  L      +GD++WP
Sbjct: 709  YRIDLLDDSKSIRESFLENGKEIRGDVELQKVLDEEYNQLLEDRRYLRDICFPNGDNNWP 768

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVN++R++ NAQ+ F +D  R SD+   +VV  V  L  +L V+ G+  L  EAQ+NAT
Sbjct: 769  LPVNIRRIVQNAQQIFHLDRSRASDLTLDDVVRGVQDLCTKLYVIRGKTLLMKEAQENAT 828

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L F  LLRS  A++RV++E+RL R AFEW++GEIE++F +S+V
Sbjct: 829  LLFQCLLRSRLATRRVIEEYRLNRLAFEWIMGEIETQFQKSIV 871


>gi|397135936|gb|AFO11463.1| RNA polymerase I, partial [Candida santjacobensis]
          Length = 873

 Score = 1028 bits (2657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/884 (59%), Positives = 648/884 (73%), Gaps = 23/884 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP- 253
            KN ++   PE    K+ LT   +L VLK IS ED   LGLN  YARP+W+++ VLP+PP 
Sbjct: 2    KNSEEGDQPE----KRLLTPSEILNVLKHISAEDIAKLGLNEDYARPEWLVITVLPVPPP 57

Query: 254  ---------PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT++LA I++ N N++R E+ GAPAH+I+EF  LLQ+H+ATY 
Sbjct: 58   PVRPSIAINETARGEDDLTYKLADILKANGNVQRCEQEGAPAHVINEFESLLQYHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKYIIRD G+R+DLRY K+ 
Sbjct: 178  GVPKSIARTLTYPEIVTPYNIQRLTQLVRNGPNEHPG---AKYIIRDTGERIDLRYHKRV 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVT+PYNAD
Sbjct: 235  GDIALQYGWKVERHIVDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTTPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQSN+PVMGIVQDTL G RK+TKRDTFI
Sbjct: 295  FDGDEMNLHVPQSEETRAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGIRKMTKRDTFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MNIL W   +DG VPQP ILKP+PLWTGKQ+ +L IPK I L R      D    
Sbjct: 355  EFDQVMNILFWVPHWDGVVPQPAILKPKPLWTGKQMASLCIPKGIFLQR-----FDEGNP 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +++  D  + I KGE++ G + KKT+G + G LIH I  E GP     F G+ Q +VN+W
Sbjct: 410  LISPKDNGMLISKGEIMYGVVDKKTVGATGGGLIHTIMREKGPQVCSSFFGNIQKVVNFW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIAD  TM  I +TIS+AK  V+ +I QAQ  +L PEPG T+ ESFE 
Sbjct: 470  LLHNGFSIGIGDTIADGATMRDIANTISEAKQKVQEIILQAQANTLSPEPGMTLRESFEQ 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ SL E NN+K MV AGSKGSFINIS M+ACVGQQ VEG+RIP
Sbjct: 530  NVSRVLNQARDTAGRSAEMSLKELNNVKQMVVAGSKGSFINISLMSACVGQQIVEGRRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            I RRLVKA+EDIMV YDGT RNSLGDVIQF+YGEDG+D   +E Q++D++      F + 
Sbjct: 650  IXRRLVKALEDIMVHYDGTTRNSLGDVIQFIYGEDGLDGTQVEKQSVDTIPGSDETFRRR 709

Query: 905  FRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
            +R + +D         L E   +++   +L+ + D E ++L  DR  L      +GD +W
Sbjct: 710  YRVDLLDPTKGGIRDELLESGKEIRGDVKLQKILDEEFKQLVEDRNYLRNICFPNGDYNW 769

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNA 1023
            PLPVNL+R+I NAQ+ F     + SD+   EVV  V +L  +L VV G+  LS+EAQ NA
Sbjct: 770  PLPVNLRRIIQNAQQIFHNGRHKASDLKLDEVVLGVRELCTKLLVVRGKSELSLEAQANA 829

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            TL F  LLRS  A++RV++E +L++ +F+WV+GE+E++F +SLV
Sbjct: 830  TLLFQCLLRSRLATRRVIEEFKLSKISFDWVLGEVETQFQKSLV 873


>gi|119514096|gb|ABL75821.1| RNA polymerase II largest subunit [Aspicilia cinerea]
          Length = 989

 Score = 1028 bits (2657), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/1009 (52%), Positives = 694/1009 (68%), Gaps = 41/1009 (4%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            FM  +  ++  VC NC KIL DE D +   A++ R+PK R   I   CK K  CE    +
Sbjct: 1    FMTKIKKVLEIVCHNCGKILVDESDPQMADAMRYRDPKRRFDAIWRLCKPKMVCESMPVV 60

Query: 154  DVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLT 213
            D    D  +  K + GGCG  QP++  E +     +KAQ+   +++ Q PE    K+ +T
Sbjct: 61   DDDDMDKSKGPKHDHGGCGNIQPEVRKEPLGFTGTWKAQKGDEENEGQQPE----KKPIT 116

Query: 214  AERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV-------------RPSD 260
             +  L + + IS ++ + +GL+  YARP+WMI+ VLP+PPPPV             R  D
Sbjct: 117  PQMALNIFRHISIDEIKKMGLSNDYARPEWMIISVLPVPPPPVRPSISVDGTGQGSRGED 176

Query: 261  DLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGR 320
            DLTH+L+ +IR N N+RR E  G+PAH++SEF  LLQ+H+ATY DN++ G P+A Q+SGR
Sbjct: 177  DLTHKLSDVIRANGNVRRCETEGSPAHVVSEFEALLQYHVATYMDNDIAGIPQALQKSGR 236

Query: 321  PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETV 380
            P+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPETV
Sbjct: 237  PVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETV 296

Query: 381  TPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLN 440
            TPYNI +L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KVERH+ 
Sbjct: 297  TPYNIHKLHQLVKNGPNDHPG---AKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIV 353

Query: 441  DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFET 500
            DGD                  R+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ET
Sbjct: 354  DGDXXXXXXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 413

Query: 501  RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFD 560
            RAEV +L MVP  IVSPQ N P+MGIVQDTL G  K+ +RD F+ KD  +NIL+W  D+D
Sbjct: 414  RAEVSQLCMVPLNIVSPQRNSPLMGIVQDTLCGVYKMCRRDVFLTKDQVINILLWVPDWD 473

Query: 561  GKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD----NDKGILTAGDTLVRIE 616
            G +PQP ILKPRP WTGKQ+ +L+IP  +NL RT A   D    ND G+         + 
Sbjct: 474  GVIPQPAILKPRPKWTGKQIISLVIPDGLNLIRTGAVKEDLSPINDDGLY--------VN 525

Query: 617  KGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD 676
             G+L+ G L KK +G S+G +IH+I+ E+GP AA  F    Q +VN+WLL N FSIGIGD
Sbjct: 526  NGDLMYGLLNKKIVGASSGGIIHIIYNELGPQAAMSFFNGAQTVVNFWLLHNGFSIGIGD 585

Query: 677  TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDE 736
            TI D +T++ I + ++K K+ V  L + A +  LEP PG  + E+FE+KV++ LNTARDE
Sbjct: 586  TIPDRETIQAIENAVNKRKDEVTELTRSATENELEPMPGMNVRETFESKVSKALNTARDE 645

Query: 737  AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFT 796
            AG++ + +L + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFT
Sbjct: 646  AGTATEDNLKDLNNAIQMARSGSKGSSINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFT 705

Query: 797  KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDI 856
            KDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKAMED+
Sbjct: 706  KDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDV 765

Query: 857  MVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNP 916
            M KYDGTVRNSLGD++QF+YGEDG+D   IESQ LD +    ++F+K FR ++     +P
Sbjct: 766  MAKYDGTVRNSLGDIVQFVYGEDGLDGAHIESQRLDIITCSDAQFEKKFRVDL----MDP 821

Query: 917  NYMLQ-EYIDDLKTIK---ELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRL 972
               +  + ++  KTI    ++++  D E ++L+A R  L T      +  + LP+N+ R+
Sbjct: 822  KACISADVLEQAKTITGDVKVQNYLDEEWEQLKAARSFLRTN-KKDDNEQFQLPINVLRI 880

Query: 973  IWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 1032
            + +A+ TFK+    PSD+HP EV+  V ++  RL VV GED LS E Q NAT+ F   LR
Sbjct: 881  LESAKTTFKIKDGTPSDLHPAEVIPQVREMLNRLVVVRGEDALSKEGQHNATILFKAHLR 940

Query: 1033 STFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            S  A KRV+ E+ L + AF+ V+GEIESRF ++ V PGEM+G +AAQSI
Sbjct: 941  SRLAFKRVVTEYALNKLAFQNVLGEIESRFCRAAVNPGEMVGVLAAQSI 989


>gi|123979344|gb|ABM81497.1| RNA polymerase II largest subunit [Rhizocarpon superficiale]
          Length = 991

 Score = 1027 bits (2656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/1007 (51%), Positives = 694/1007 (68%), Gaps = 41/1007 (4%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            FM  +  ++ +V  NC KIL DE+   F +AL+ R+PK R   I   CK K  CE     
Sbjct: 1    FMTKIKKLLETVYHNCGKILVDENVPAFAEALRYRDPKRRFDAIWRICKPKMICESTMPQ 60

Query: 154  DVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLT 213
            +    +  + +  + GGCG  QP++  EG+++   +KAQ+   ++  Q PE    K+ +T
Sbjct: 61   NEDNAEKAKEITHDHGGCGNIQPEVRREGLRLTGTWKAQKGDEENDGQQPE----KKPIT 116

Query: 214  AERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP-------------VRPSD 260
             +  L + + IS ++ + +GL+  YARP+WMI+ VLP+PPPP             +R  D
Sbjct: 117  PQMALNIFRNISTDEIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGTGQGMRGED 176

Query: 261  DLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGR 320
            DLT++L  IIR N N+RR E  G+PAH++SEF QLLQFH+ATY DN++ GQP+A Q+SGR
Sbjct: 177  DLTYKLGDIIRANGNVRRCETEGSPAHVVSEFEQLLQFHVATYMDNDIAGQPQALQKSGR 236

Query: 321  PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETV 380
            P+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPETV
Sbjct: 237  PVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYPETV 296

Query: 381  TPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLN 440
            TPYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KVERH+ 
Sbjct: 297  TPYNIQKLHQLVKNGPNEHPG---AKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIV 353

Query: 441  DGDFVLFNRQPSLHKMSIMGH----------RIKIMPYSTFRLNLSVTSPYNADFDGDEM 490
            DGDF++FNRQPSLHK S+MGH          R+++MPYSTFRLNLSVTSPYNADFDGDEM
Sbjct: 354  DGDFIIFNRQPSLHKESMMGHKGHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEM 413

Query: 491  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
            N+HVPQS ETRAEV +L MVP  IVSPQ N P+MGIVQDTL G  K+ +RD F+ K+  M
Sbjct: 414  NLHVPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVM 473

Query: 551  NILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR--TAAWHADNDKGILTA 608
            NIL+W  D+DG +P P I KPRP+WTGKQ+ +L+IP+ ++L R  +  +   ND G+   
Sbjct: 474  NILLWVPDWDGVIPHPAIFKPRPMWTGKQIISLVIPENLSLVRPSSEGFSPLNDDGLGVH 533

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            G        G+L+ G   KK++G S G +IH+++ E GP+AA KF    Q +VNYWLL+N
Sbjct: 534  G--------GQLMYGLFNKKSVGASGGGIIHIVFNEKGPEAAMKFFNGAQTVVNYWLLRN 585

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDTI D  T++ I D ++K K +V  + + A +  LEP PG  + E+FE+KV++
Sbjct: 586  GFSIGIGDTIPDRNTIQQIEDAVNKQKEDVAEITRNATENELEPLPGMNVRETFESKVSK 645

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
             LN ARD+AG+  ++SL + NN   M  +GSKGS INISQMTA  GQQ+VEGKRIPFGF 
Sbjct: 646  ALNKARDDAGTVTEESLKDLNNAIQMARSGSKGSTINISQMTAVAGQQSVEGKRIPFGFK 705

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRR
Sbjct: 706  YRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRR 765

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D V IE Q +D +     +F + FR +
Sbjct: 766  LVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGVHIEPQRVDIITCSDDQFAERFRVD 825

Query: 909  MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
            + +     +    E   ++     ++   D E ++L+A R  L        +    LP+N
Sbjct: 826  LMDPKGAISAAYLEQAGEIAGDVRIQSYLDEEWEQLKAARDFLRKN-KQDDNEQLQLPIN 884

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            + R+I +A+  F +     SD++P++V+  V  L +RL VV G+DPLS E Q NATL F 
Sbjct: 885  VIRIIESAKTKFHIKDSARSDLNPVDVITQVRALLDRLVVVRGDDPLSKEGQHNATLLFK 944

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGC 1075
              LR   A KR++ E  L + AF+ V+GEIESRF Q++V PGEM+G 
Sbjct: 945  AQLRPRLAFKRLVLETSLNKLAFQSVLGEIESRFSQAMVNPGEMVGV 991


>gi|397135973|gb|AFO11481.1| RNA polymerase I, partial [Candida caseinolytica]
          Length = 872

 Score = 1027 bits (2656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/871 (58%), Positives = 651/871 (74%), Gaps = 19/871 (2%)

Query: 207  ERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP----------PV 256
            ER+Q LT   +L V + IS +D Q LGLN  YARP+W+I+ VLP+PPP            
Sbjct: 11   ERRQ-LTPSEILNVFRHISPKDIQNLGLNEDYARPEWLIISVLPVPPPPVRPSIAINDSA 69

Query: 257  RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQ 316
            R  DDLT +LA I++ + N++R  + GAPAH+I+EF  LLQ+H+ATY DN++   P+A Q
Sbjct: 70   RGEDDLTSKLADILKASANVQRCLQEGAPAHVINEFETLLQYHVATYMDNDIASVPQALQ 129

Query: 317  RSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTY 376
            +SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++DQ+GVP SIA  LTY
Sbjct: 130  KSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDQVGVPRSIARTLTY 189

Query: 377  PETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVE 436
            PE VTPYNI+RL +LV+ GP+  PG   AKY+IRD G+R+DLRY K++ D  L+ G+ VE
Sbjct: 190  PEIVTPYNIQRLSQLVQNGPNEHPG---AKYVIRDTGERIDLRYHKRAGDIPLQYGWTVE 246

Query: 437  RHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 496
            RHL D D VLFNRQPSLHKMS+M HR+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ
Sbjct: 247  RHLQDDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 306

Query: 497  SFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW 556
            S ETRAE+ +L MVP  IVSPQSN+PVMGIVQD+L G RK+T RDTF+  +  MN+L+W 
Sbjct: 307  SEETRAELTQLAMVPLQIVSPQSNKPVMGIVQDSLCGIRKLTLRDTFLNYEQVMNVLLWV 366

Query: 557  EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIE 616
             D+DG+VP P I+KP+PLWTGKQ+ +L IPK INL R      D++  + +  D  + IE
Sbjct: 367  PDWDGQVPIPAIMKPKPLWTGKQIVSLCIPKGINLIRI-----DDNNPLSSPKDNGMLIE 421

Query: 617  KGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD 676
             GE++ G + KKT+G + G L+H I  E GP     F    Q +VNYWLL N FSIGIGD
Sbjct: 422  NGEIIFGVVDKKTVGATGGGLVHTIMREKGPQVCCNFFTGIQMVVNYWLLHNGFSIGIGD 481

Query: 677  TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDE 736
            TIADA TM  I +TI+ AK  V+++I+ AQ+  L  EPG T+ ESFE+KV+Q LN ARD 
Sbjct: 482  TIADAATMRDITNTITAAKEKVQDIIRDAQENRLPAEPGMTLRESFEHKVSQTLNQARDT 541

Query: 737  AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFT 796
             G SA+ SL ++NN+K MVTAGSKGSFINISQM+ACVGQQ VEGKRIPFGF DR+LPHFT
Sbjct: 542  TGRSAEMSLKDTNNVKQMVTAGSKGSFINISQMSACVGQQIVEGKRIPFGFKDRSLPHFT 601

Query: 797  KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDI 856
            KDDY PES+GF+ENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+EDI
Sbjct: 602  KDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 661

Query: 857  MVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNP 916
            MV YDGT RNSLGDVIQF+YGEDG+D   +E QT+D++    + F+K +R ++ + + + 
Sbjct: 662  MVHYDGTTRNSLGDVIQFVYGEDGVDGTSVEKQTIDTIPGSDASFEKRYRIDLLDPSTSI 721

Query: 917  NYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNA 976
            +  L E   D+K   +L+ V D E  +L  DR  L      +GD +WPLPVNL+R+I NA
Sbjct: 722  SESLLESGKDIKGDVKLQKVLDQEYDQLLKDRKYLREVCFPNGDYNWPLPVNLRRIIQNA 781

Query: 977  QKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFA 1036
            Q+ F    ++ SD+   E+VE V  L  ++ VV G+  L+ EAQ+NATL F  LLRS  A
Sbjct: 782  QQIFHSGRQKASDLKLSEIVEGVRDLCTKVHVVRGKGKLAEEAQENATLLFQCLLRSRLA 841

Query: 1037 SKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            ++RV++E +L+R +FEWV+GEIE++F +S+V
Sbjct: 842  ARRVIEEFKLSRISFEWVMGEIETQFQKSIV 872


>gi|119514058|gb|ABL75802.1| RNA polymerase II largest subunit [Psora rubiformis]
          Length = 973

 Score = 1027 bits (2656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/1010 (51%), Positives = 693/1010 (68%), Gaps = 59/1010 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            FM  +  ++ +VC NC KIL DE +  F  AL+ R+PK R   +   CK K  CE    +
Sbjct: 1    FMTKIKKLLETVCHNCGKILVDESNAAFADALRYRDPKRRFDAVWRLCKPKMVCETTATL 60

Query: 154  D--VPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT 211
            D   P  D ++P K + GGCG  QP++  EG+++   +K Q+   +++ Q PE    K+ 
Sbjct: 61   DDDAPSDDTKKP-KHDHGGCGNIQPEIRREGLRLNGTWKVQKGDEENESQQPE----KKP 115

Query: 212  LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMIL------------QVLPIPPPPVRPS 259
            +T +  L + + IS +D +L+GL+  YARP+WMI+             +       +R  
Sbjct: 116  ITPQMALNIFRHISVDDIKLMGLSNDYARPEWMIITVLPVPPPPVRPSIAVDGGNGMRGE 175

Query: 260  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
            DDLT++L  IIR N N+RR E  G+PAH++ EF QLLQFH+ATY DN++ GQP+A Q+SG
Sbjct: 176  DDLTYKLGDIIRANGNVRRCETEGSPAHVVDEFEQLLQFHVATYMDNDIAGQPQALQKSG 235

Query: 320  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
            RP+KSI +RLK KEGR+RGNLMGKRVD+SARTVIT DP +++D++GVP SIA  LTYPET
Sbjct: 236  RPVKSIRARLKGKEGRLRGNLMGKRVDYSARTVITGDPNLSLDEVGVPRSIAKTLTYPET 295

Query: 380  VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHL 439
            VTPYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KVERH+
Sbjct: 296  VTPYNIQKLHQLVKNGPNEHPG---AKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHI 352

Query: 440  NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 499
             DG ++                R+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS E
Sbjct: 353  VDGGYI----------------RVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEE 396

Query: 500  TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 559
            TRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ K+  MNIL+W  D+
Sbjct: 397  TRAEINQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNILLWVPDW 456

Query: 560  DGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA--AWHADNDKGILTAGDTLVRIEK 617
            DG +PQP I+KPRP+WTGKQ+ +L+IP  +NL R++   +   ND G+L        +  
Sbjct: 457  DGVIPQPAIIKPRPMWTGKQLVSLVIPSGLNLLRSSDDGFSPKNDDGLL--------VSN 508

Query: 618  GELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDT 677
            GEL+ G L KK++G S+G +IH+I+ E G +AA  F    Q +VNYWLL N FSIGIGDT
Sbjct: 509  GELMYGLLNKKSVGASSGGIIHIIYNEKGWEAAVSFFNGAQTVVNYWLLHNGFSIGIGDT 568

Query: 678  IADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEA 737
            I D  T+E I   + K K++V ++ K+A +  LE  PG  + E+FE+KV++ LN ARD+A
Sbjct: 569  IPDRVTIEKIKSAVDKQKDDVTDITKEATENKLESLPGMNVRETFESKVSKALNKARDDA 628

Query: 738  GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTK 797
            G+  ++SL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIP GF  RTLPHFTK
Sbjct: 629  GTVTEESLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPLGFKYRTLPHFTK 688

Query: 798  DDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIM 857
            DDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M
Sbjct: 689  DDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVM 748

Query: 858  VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM----DEEN 913
             KYDGTVRNSLGD++QF+YGEDG+D   IE+Q +D +     +F++ FR ++     E +
Sbjct: 749  CKYDGTVRNSLGDIVQFVYGEDGLDGAHIEAQRVDIITCSDKQFERKFRVDLMDSRSETS 808

Query: 914  WNPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
             +  ++ Q  E I DL+T + L D    E ++L A R +   +     +  + LP+N+ R
Sbjct: 809  ISAEFLEQANEMIGDLETQEYLED----EYKQLVAAR-EFLRKNKQDDNEQYQLPINVIR 863

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            ++  A+ TFK+     S++HP EV+ AV+ L +RL VV G D LS E Q NATL F   L
Sbjct: 864  ILDTAKTTFKIKTGAKSNLHPAEVIPAVNNLLDRLVVVRGSDSLSREGQHNATLLFKAQL 923

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            RS  A KR++ E+ L + AF+ V+GEIESRF ++ V PGEM+G +AAQSI
Sbjct: 924  RSRLAFKRLVMENSLNKLAFQHVLGEIESRFGKAAVHPGEMVGVLAAQSI 973


>gi|397135922|gb|AFO11456.1| RNA polymerase I, partial [Pachysolen tannophilus]
          Length = 870

 Score = 1027 bits (2655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/882 (57%), Positives = 644/882 (73%), Gaps = 22/882 (2%)

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
            N D+   PE    ++ LT   +L V K IS EDC+ LG N  YARP+WMI+ VLP+PPP 
Sbjct: 1    NVDEADQPE----RRLLTPAEILNVFKHISPEDCKKLGFNEDYARPEWMIITVLPVPPPA 56

Query: 256  VRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
            VRPS          DDLT +LA I+++N ++++ E +G+P H+ISE+  LLQFH+ATY D
Sbjct: 57   VRPSVQVNDTARGEDDLTFKLADIVKYNMSVQKLEMDGSPLHVISEYEALLQFHVATYMD 116

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            N++ GQP+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP + +DQ+G
Sbjct: 117  NDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVG 176

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP SIA  LTYPE VTPYNI +L  LV  GP+  PG   A+Y+ RD G+R+DL+Y K++ 
Sbjct: 177  VPRSIARTLTYPEMVTPYNIHKLTLLVRNGPNEHPG---ARYVFRDTGERIDLKYHKRAG 233

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
            D  L+ G+ VERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADF
Sbjct: 234  DIALQYGWIVERHLMDNDPVLFNRQPSLHKMSMMTHRVKVMPYSTFRLNLSVTSPYNADF 293

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+PVMGIVQDTL G RK+T RD FIE
Sbjct: 294  DGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDVFIE 353

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGI 605
             D  MNIL W   +DG +P+PTI+KP+PLWTGKQ+ +++IPK IN+ R      D     
Sbjct: 354  YDQVMNILYWIPTWDGVIPEPTIIKPKPLWTGKQMLSMVIPKGINIER-----KDEKFTY 408

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
            L+  DT + I  GE++ G + KKT+G + G LIH +  E GP       G+ Q +VNYWL
Sbjct: 409  LSKDDTGMLIIDGEIMLGVVNKKTVGATGGGLIHAVMREKGPQVCADLFGNIQKVVNYWL 468

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGDTIADA T+  I +TI KAK+ V+ +I +AQ+  L PEPG T+ ESFE  
Sbjct: 469  LHNGFSIGIGDTIADAPTVRQITNTILKAKDKVQEIILRAQNNELPPEPGMTLRESFEQN 528

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            V+QVLN ARD+ G +   +L + NN+K MV+AGSKGS INISQM+ACVGQQ VEGKRIPF
Sbjct: 529  VSQVLNQARDDVGKATADALKDLNNVKQMVSAGSKGSNINISQMSACVGQQIVEGKRIPF 588

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF DR+LPHFTKDDY PESRGFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 589  GFSDRSLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 648

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRLVKA+EDIMV YDGT RNSLG+V+QF+YGEDG+D+  +E Q +D++      F++ +
Sbjct: 649  QRRLVKALEDIMVHYDGTTRNSLGNVLQFIYGEDGLDATQVEKQAIDTIPGTDEAFERRY 708

Query: 906  RFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL 965
            R ++ +++ +    L EY  ++     L+ + D E  +L  DR  L  E   +GD  WPL
Sbjct: 709  RIDVMDQSKSIRPELIEYGSEIIGDVNLQSILDEEYNQLLEDRRYLREECFLNGDFQWPL 768

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
            PVN++R+I N+QK F +D  + SD+   ++V  V +L  +L V  G   L  E+  NATL
Sbjct: 769  PVNIRRVIQNSQKIFHIDHSKASDLTLQDIVRGVQELCGKLYVTKGSGKLYEESTANATL 828

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
             F  L+RS  A++R+++E+RL++ AFEWV+G+IE +F +S+V
Sbjct: 829  LFQCLIRSRLATRRIVEEYRLSKIAFEWVLGQIEDQFQRSVV 870


>gi|21280519|gb|AAM45152.1|AF395111_1 RNA polymerase II largest subunit [Ochromonas danica]
          Length = 1064

 Score = 1026 bits (2654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 537/1075 (49%), Positives = 701/1075 (65%), Gaps = 71/1075 (6%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
            ECPGHFGH+EL + +FH GF+  V+ I+R VCF+CS++L DE   K ++ ++I +P+ R 
Sbjct: 1    ECPGHFGHIELHRAVFHCGFIDEVVRILRCVCFHCSRLLLDEKIPKDREVMQITDPETRF 60

Query: 135  KKILDAC-KNKTKCEGGDE---------------------IDVPGQDGEEPLKKNKGG-- 170
            +KI D C +   KCE  D                       D+ G D  +  + +     
Sbjct: 61   RKIHDRCNRTMVKCEVADSEQMTRFLDEANPDASEARNFIDDIFGADAFQSTQASSSSHN 120

Query: 171  -----CGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRIS 225
                 CG  QPK   EG+ +   + ++          P    R++ L+A     VL++IS
Sbjct: 121  SKRPPCGNVQPKFKREGLTIRITFSSE------DSDAPTLGPRQRELSATEAYEVLRKIS 174

Query: 226  DEDCQLLGLNPKYARPDWMILQVLPIPPP---------PVRPSDDLTHQLAMIIRHNENL 276
            DED ++LG NPKY+RPDWM++ VLP+PPP          V+  DDLT+QL  I++ N  L
Sbjct: 175  DEDVEMLGFNPKYSRPDWMVVTVLPVPPPHVRPTVTEGDVQSQDDLTYQLTNIVKTNLIL 234

Query: 277  RRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRI 336
            +     G    II E+ + LQ H+   FDNE    PR TQ++GRP+K++  RLK KEGR+
Sbjct: 235  KDTIMKGGSKLIIQEYEKALQAHVNALFDNERDDNPRVTQKTGRPLKTVRQRLKGKEGRL 294

Query: 337  RGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYP-ETVTPYNIERLKELVEYG 395
            RGNLMGKRVDFSARTVIT DP ++IDQ+GVP     +L     +    NI+ L+++V  G
Sbjct: 295  RGNLMGKRVDFSARTVITADPNLSIDQVGVPRLYCFDLDCSCNSDNHINIDELRDMVARG 354

Query: 396  PHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHK 455
            P   PG   A+YI+R DG R+DLR ++ S+D  LE G+ VERHL D D VLFNRQPSLHK
Sbjct: 355  PLEWPG---ARYIVRADGVRIDLRKVRSSNDVQLEYGWTVERHLRDDDIVLFNRQPSLHK 411

Query: 456  MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 515
            MS MGHR K++ +STFRLNLSVT+PYNADFDGDEMN+HVPQS   RA+  ELMMVP+ IV
Sbjct: 412  MSTMGHRAKVLDWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLTARADAQELMMVPRNIV 471

Query: 516  SPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLW 575
            +PQSNR VMGIVQD LLG  ++TKRD F++K+V MN ++W   +DG +P P ILKP+PLW
Sbjct: 472  TPQSNRNVMGIVQDALLGVTRMTKRDVFVDKEVVMNTMVWLPTWDGNIPAPAILKPKPLW 531

Query: 576  TGKQVFNLIIPKQINLFRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGTLCKKTLGT 632
            TGKQ+F++I PK IN +R  + +   DK +       D+ V I  G LL G + K  +G 
Sbjct: 532  TGKQLFSMICPK-IN-YRGRSKNHVEDKNVTDPFNYLDSEVLIHSGNLLQGIVDKNIVGA 589

Query: 633  STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTIS 692
            S GS++H+ W   G +  R F+   Q +VNYW++  ++S+G+ DT+ADA T+  I  T++
Sbjct: 590  SGGSIVHICWLSKGWEETRDFMNQIQAVVNYWMVNTSYSVGVSDTVADATTINAIQSTLN 649

Query: 693  KAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLK 752
            +AK  VK ++ +AQ+ SL+  PG+ +MESFE  +N+VLN AR   G +AQ+SL E N +K
Sbjct: 650  EAKEKVKAIMTKAQEGSLKMMPGKPLMESFEMXINEVLNDARSTVGKAAQRSLKERNAIK 709

Query: 753  AMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSY 812
              V AGSKGS +NISQ+ ACVGQQNV+GKRI +GF  RTLPHF KDD G ESRGFVENSY
Sbjct: 710  GTVMAGSKGSELNISQIIACVGQQNVQGKRIAYGFNQRTLPHFAKDDLGMESRGFVENSY 769

Query: 813  LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 872
            LRGL+PQEFFFHAMGGREG IDTAVKT+ETGYIQRRLVKAME +M +YD T+RNS G VI
Sbjct: 770  LRGLSPQEFFFHAMGGREGCIDTAVKTAETGYIQRRLVKAMETVMAQYDTTLRNSRGCVI 829

Query: 873  QFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEE------------NWNPNYML 920
            QFLYGEDGMD+  IE Q  DS     S+F + +  ++  E            N    YM 
Sbjct: 830  QFLYGEDGMDAQRIEKQVFDSYTFTASKFREVYYLDVTSEYLGRLSYINTATNERALYMH 889

Query: 921  QEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP-----LPVNLKRLIWN 975
               I+  +   ELR + D E ++L  DR  L   +   G  S       LPVN+ RLIWN
Sbjct: 890  PLVIEKCRNDPELRMLLDEEYEQLLKDRGSLREIMGCRGSGSESDPNTYLPVNIDRLIWN 949

Query: 976  AQKTFKVDPRRPSDMHPMEVVEAVDKL-QERLKVVPGEDPLSVEAQKNATLFFNILLRST 1034
            AQ+ F+++   P  MHP  V++AV KL QE L +V G DP+S EAQ NATL F IL+RS 
Sbjct: 950  AQRQFRININEPCPMHPRIVLDAVKKLCQEDLLIVRGSDPISREAQSNATLLFQILVRSK 1009

Query: 1035 FASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1089
             A+KRVL+++RLT++A EWV+G I S F  S+V PGEM G +AAQSIGEPATQMT
Sbjct: 1010 LATKRVLRDYRLTKDALEWVVGAIVSDFRASVVHPGEMAGVLAAQSIGEPATQMT 1064


>gi|397135932|gb|AFO11461.1| RNA polymerase I, partial [Candida blankii]
          Length = 872

 Score = 1026 bits (2653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/886 (57%), Positives = 644/886 (72%), Gaps = 28/886 (3%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP- 253
            KN D   + E    K+ LT   VL V K ISDED   LGLN  YARPDWM++ VLP+PP 
Sbjct: 2    KNADYGDMAE----KRMLTPSDVLNVFKHISDEDITRLGLNGDYARPDWMVITVLPVPPP 57

Query: 254  ---------PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT++LA I++ N N++R ++ GAPAH+I+EF  LLQ+H+ATY 
Sbjct: 58   PVRPSIAINETARGEDDLTYKLADILKANGNVQRCDQEGAPAHVINEFESLLQYHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP + +DQ+
Sbjct: 118  DNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPE VTPYNI+RL ELV  GP+  PG   AKY+IRD G+R+DLRY K++
Sbjct: 178  GVPKSIARTLTYPEIVTPYNIQRLSELVRNGPNEHPG---AKYVIRDTGERIDLRYHKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T+RDTF+
Sbjct: 295  FDGDEMNLHVPQSEETRAELSQIAAVPLQIVSPQSNKPVMGIVQDTLCGIRKLTRRDTFL 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR---TAAWHADN 601
            E D  MNIL W   ++G VPQP ILKP+PLWTGKQ+ +L IP  I L R      W +  
Sbjct: 355  EYDQVMNILFWVPQWNGIVPQPAILKPKPLWTGKQMVSLTIPSGIFLQRFDEGTTWLSPK 414

Query: 602  DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            D G+L A        KGE++ G + K T+G++ G LIH I  E GP     F G  Q +V
Sbjct: 415  DNGMLIA--------KGEIVYGAVDKATVGSTGGGLIHTIMREKGPQVCCNFFGAVQKVV 466

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            N+WLL N FSIGIGDTIAD+ TM  I + IS+AK  V   I++A    L+   G T+ E+
Sbjct: 467  NFWLLHNGFSIGIGDTIADSATMRDITNAISEAKQAVAGFIEEAHQNKLKQAAGMTLRET 526

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE KV   LN ARD+AG S+Q SL+E NN+K MV +GSKGSFINISQM+ACVGQQ VEGK
Sbjct: 527  FEQKVMVALNEARDQAGKSSQVSLTEKNNVKQMVVSGSKGSFINISQMSACVGQQVVEGK 586

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF DR+LPHFTKDD+GPESRGF+ENSYLRGLTPQEFFFHAM GREGLIDTAVKT+E
Sbjct: 587  RIPFGFADRSLPHFTKDDFGPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 646

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+EDIMV+YDGT RNSLGD+IQFLYGEDG+D   +E Q +D++      F
Sbjct: 647  TGYIQRRLVKALEDIMVQYDGTTRNSLGDIIQFLYGEDGLDGAQVEKQPIDTIPGSDEAF 706

Query: 902  DKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDS 961
            DK +R ++ +   +    L E  +++    EL+ + D E ++L  DR  L T +  +G+ 
Sbjct: 707  DKRYRIDLMDSTKSIKPSLLESGNEILGDVELQKLLDEEYEQLLDDRKNLRTFVFENGEH 766

Query: 962  SWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQK 1021
             WPLPVN++R++ NAQ+ F +D  + SD+   ++++ V  L  +L VV G+   S EAQ+
Sbjct: 767  VWPLPVNIRRVVQNAQQIFNLDRNKASDLQLGDLIKGVRSLLSKLIVVRGQGTTSGEAQE 826

Query: 1022 NATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            +A   F  L+RS  A++R+++E+RL + AFEWV+GEIES+F +S+V
Sbjct: 827  DAVYLFRCLVRSRLAARRIIEEYRLNKVAFEWVLGEIESQFARSIV 872


>gi|123979322|gb|ABM81486.1| RNA polymerase II largest subunit [Myelochroa aurulenta]
          Length = 984

 Score = 1025 bits (2651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/976 (54%), Positives = 687/976 (70%), Gaps = 41/976 (4%)

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPG-QDGEEPLKKNKGGCGAQQPKLT 179
            F  A++ R+PK R   +   CK K  CE    +D     D  +  K + GGCG  QP++ 
Sbjct: 29   FADAIRRRDPKKRFDLVWRLCKPKMICETTMALDDDAPSDKTKETKHDHGGCGNMQPEVR 88

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
             EG+++   +KAQ+   +++ Q PE    K+ +T +  L + + IS ED + +GL+  YA
Sbjct: 89   REGLRLTGTWKAQKGDEENEGQQPE----KKPITPQMALNIFRHISTEDIKKIGLSNDYA 144

Query: 240  RPDWMILQVLPIPPPPV------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
            RP+WMI+ VLP+PPPPV            R  DDLT++L  IIR N N+RR E  G+PAH
Sbjct: 145  RPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPAH 204

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            +++EF QLLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDF
Sbjct: 205  VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 264

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVIT DP +++D++GVP SIA  LTYPETVTPYNI++L +LV+ GP+  PG   AKY
Sbjct: 265  SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG---AKY 321

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            +IRD G+R+DLR+ K++ +  L+ G+KVERH+ DGD+++FNRQPSL   S+MGHR+++MP
Sbjct: 322  VIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLALESMMGHRVRVMP 381

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            YSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIV
Sbjct: 382  YSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNGPLMGIV 441

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL G  K+ +RD F+ K+  MNIL+W  D+DG +PQP I+KP  +WTGKQ+ +L+IP 
Sbjct: 442  QDTLCGIYKMCRRDVFLIKEQVMNILLWVPDWDGVIPQPAIVKPLAMWTGKQILSLVIPT 501

Query: 588  QINLFRTA--AWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
             +NL R     +   ND G+L +G        GEL+ G L KKT+G S G +IH+++ E 
Sbjct: 502  GLNLLRGTEEGFSPLNDDGLLISG--------GELMYGLLNKKTVGASGGGVIHIVFNEK 553

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            GP+AA  F    Q +VNYWLL N FSIGIGDTI D  T++ I + ++  K  V  + + A
Sbjct: 554  GPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHTIQQIENAVNNQKAEVMEITRSA 613

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LE  PG  + E+FE+KV++ LN ARD+AG+  +KSL + NN   M  +GSKGS IN
Sbjct: 614  TENELESLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMARSGSKGSTIN 673

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHA
Sbjct: 674  ISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHA 733

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGDV+QF+YGEDG+D V 
Sbjct: 734  MAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDVVQFVYGEDGLDGVH 793

Query: 886  IESQTLDSLKMKKSEFDKAFRFE-MD---EENWNPNYMLQ--EYIDDLKTIKELRDVFDA 939
            IE Q +D +     +F++ FR + MD   E + +P  + Q  E I D++T K L    D 
Sbjct: 794  IEQQRVDIIACSTKQFERKFRIDLMDSKPETSISPELLEQANEMIGDVETQKHL----DN 849

Query: 940  EVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAV 999
            E ++LE DR +L        + +  LP+N+ R++  A+ TFK+     S++HP EV+  V
Sbjct: 850  EYRQLEKDRAELRKNRQDDSE-NLQLPLNIIRILDTAKTTFKIKNGARSNLHPAEVIPQV 908

Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
              L +RL VV G D LS EAQ NATL F I LRS  A KR++ E+ L + AF+ V+GEIE
Sbjct: 909  QDLLDRLVVVRGTDELSQEAQHNATLLFKIQLRSRLAFKRLVMENSLNKLAFQHVLGEIE 968

Query: 1060 SRFLQSLVAPGEMIGC 1075
            SRF ++ V PGEM+G 
Sbjct: 969  SRFCRAAVNPGEMVGV 984


>gi|119643527|gb|ABL85575.1| RNA polymerase II largest subunit [Flavopunctelia flaventior]
          Length = 995

 Score = 1025 bits (2651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/975 (54%), Positives = 687/975 (70%), Gaps = 39/975 (4%)

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEID--VPGQDGEEPLKKNKGGCGAQQPKL 178
            F  A++ R+PK R   +   CK K  CE    +D   P    +EP K + GGCG  QP++
Sbjct: 40   FADAIRRRDPKKRFDMVWRLCKPKMICETTMALDDDAPSDKTKEP-KHDHGGCGNIQPEV 98

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              EG+++   +KAQ+   +++ Q PE    K+ +T +  L + + IS ED + +GL+  Y
Sbjct: 99   RREGLRLTGTWKAQKGDEENEGQQPE----KKPITPQMALNIFRHISTEDIKRMGLSNDY 154

Query: 239  ARPDWMILQVLPIPPPPV------------RPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
            ARP+WMI+ VLP+PPPPV            R  DDLT++L  IIR N N+RR E  G+PA
Sbjct: 155  ARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPA 214

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            H+++EF QLLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVD
Sbjct: 215  HVVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVD 274

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP +++D++GVP SIA  LTYPETVTPYNI +L +LV+ GP+  PG   AK
Sbjct: 275  FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPG---AK 331

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            Y+IRD G+R+DLR+ K++ +  L+ G+KVERH+ DG++++FNRQP  HK S+MGHR+++M
Sbjct: 332  YVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGNYIIFNRQPXXHKESMMGHRVRVM 391

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            PYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGI
Sbjct: 392  PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNGPLMGI 451

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDTL G  K+ +RD F+ K+  MNIL+W  D+DG +PQP I+KP  +WTGKQ+ +L+IP
Sbjct: 452  VQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPLAMWTGKQILSLVIP 511

Query: 587  KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
              +NL R       N++G     D  + I  GEL+ G L KKT+G S G +IH+++ E G
Sbjct: 512  TGLNLLR------GNEEGFSPLNDDGLLISSGELMYGLLAKKTVGASGGGVIHIVFNEKG 565

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
            P+AA  F    Q +VNYWLL N FSIGIGDTI D  T++ I + ++  K  V  + + A 
Sbjct: 566  PEAAMTFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHTIQQIENAVNNQKAEVLEITRSAT 625

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
            +  LE  PG  + E+FE+KV++ LN ARD+AG+  +KSL + NN   M  +GSKGS INI
Sbjct: 626  ENELESLPGMNVRETFESKVSKALNKARDDAGAVTEKSLKDLNNATQMARSGSKGSTINI 685

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM
Sbjct: 686  SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 745

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
             GREGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D   I
Sbjct: 746  AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGGHI 805

Query: 887  ESQTLDSLKMKKSEFDKAFRFE-MD---EENWNPNYMLQ--EYIDDLKTIKELRDVFDAE 940
            E Q +D L     +F++ FR + MD   E + +P ++ Q  E + D++T K L    D E
Sbjct: 806  EPQRVDILACSTKQFERKFRVDLMDSKPETSISPEFLEQANEMVGDVETQKHL----DNE 861

Query: 941  VQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
             ++LE DR +L  +I      +  LP+N+ R++  A+  FK+     S++HP EV+  V 
Sbjct: 862  YRQLEKDRAEL-RKIRQDDAETLQLPLNVLRILETAKTAFKIKNGARSNLHPAEVIPQVQ 920

Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
             L +RL VV G D LS EAQ NATL F I LRS  A KR++ E+ L + AF+ V+GEIES
Sbjct: 921  DLLDRLVVVRGTDKLSEEAQHNATLLFKIQLRSRLAFKRLVLENSLNKLAFQHVLGEIES 980

Query: 1061 RFLQSLVAPGEMIGC 1075
            RF ++ V PGEM+G 
Sbjct: 981  RFCRAAVNPGEMVGV 995


>gi|119514098|gb|ABL75822.1| RNA polymerase II largest subunit [Aspicilia caesiocinerea]
          Length = 989

 Score = 1025 bits (2649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/1009 (52%), Positives = 690/1009 (68%), Gaps = 41/1009 (4%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            FM  +  ++  VC NC KIL DE D +   A++ R+PK R   I   CK K  CE     
Sbjct: 1    FMTKIKKVLEIVCHNCGKILVDESDPQMADAMRYRDPKRRFDAIWRLCKPKMVCESMPVA 60

Query: 154  DVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLT 213
            D    D  +  K + GGCG  QP++  E +     +KAQ+   +++ Q PE    K+ +T
Sbjct: 61   DDDDMDKSKGPKHDHGGCGNIQPEVRKEPLGFTGTWKAQKGDEENEGQQPE----KKPIT 116

Query: 214  AERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV-------------RPSD 260
             +  L + + IS ++ + +GL+  YARP+WMI+ VLP+PPPPV             R  D
Sbjct: 117  PQMALNIFRHISTDEIKKMGLSNDYARPEWMIISVLPVPPPPVRPSISVDGTGQGSRGED 176

Query: 261  DLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGR 320
            DLTH+L+ +IR N N+RR E  G+PAH++SEF  LLQ+H+ATY DN++ G P+A Q+SGR
Sbjct: 177  DLTHKLSDVIRANGNVRRCETEGSPAHVVSEFEALLQYHVATYMDNDIAGIPQALQKSGR 236

Query: 321  PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETV 380
            P+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPETV
Sbjct: 237  PVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETV 296

Query: 381  TPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLN 440
            TPYNI +L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KVERH+ 
Sbjct: 297  TPYNIHKLHQLVKNGPNDHPG---AKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIV 353

Query: 441  DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFET 500
                                 R+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ET
Sbjct: 354  XXXXXXXXXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 413

Query: 501  RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFD 560
            RAEV +L MVP  IVSPQ N P+MGIVQDTL G  K+ +RD F+ +D  MNIL+W  D+D
Sbjct: 414  RAEVSQLCMVPLNIVSPQRNSPLMGIVQDTLCGVYKMCRRDVFLTRDQVMNILLWVPDWD 473

Query: 561  GKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD----NDKGILTAGDTLVRIE 616
            G +PQP ILKPRP WTGKQ+ +L+IP  +NL RT A   D    ND G+         + 
Sbjct: 474  GVIPQPAILKPRPKWTGKQIISLVIPDGLNLIRTGAVKEDLSPINDDGLY--------VN 525

Query: 617  KGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD 676
             G+L+ G L KK +G S+G +IH+I+ E+GP AA  F    Q +VN+WLL N FSIGIGD
Sbjct: 526  NGDLMYGLLNKKIVGASSGGIIHIIYNELGPQAAMSFFNGAQTVVNFWLLHNGFSIGIGD 585

Query: 677  TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDE 736
            TI D +T++ I + ++K K+ V  L + A +  LEP PG  + E+FE+KV++ LNTARDE
Sbjct: 586  TIPDRETIQAIENAVNKRKDEVTELTRSATENELEPMPGMNVRETFESKVSKALNTARDE 645

Query: 737  AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFT 796
            AG++ + +L + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFT
Sbjct: 646  AGTATEDNLKDLNNAIQMARSGSKGSSINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFT 705

Query: 797  KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDI 856
            KDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKAMED+
Sbjct: 706  KDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDV 765

Query: 857  MVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNP 916
            M KYDGTVRNSLGD++QF+YGEDG+D   IESQ LD +    ++F+K FR ++     +P
Sbjct: 766  MAKYDGTVRNSLGDIVQFVYGEDGLDGAHIESQRLDIITCSDAQFEKKFRVDL----MDP 821

Query: 917  NYMLQ-EYIDDLKTIK---ELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRL 972
               +  + ++  KTI    ++++  D E ++L+A R  L T      +  + LP+N+ R+
Sbjct: 822  KACISADVLEQAKTITGDVKVQNYLDEEWEQLKAARSFLRTN-KKDDNEQFQLPINVLRI 880

Query: 973  IWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 1032
            + +A+ TFK+    PSD+HP EV+  V ++  RL VV GED LS E Q NAT+ F   LR
Sbjct: 881  LESAKTTFKIKDGTPSDLHPAEVIPQVREMLNRLVVVRGEDALSKEGQHNATILFKAHLR 940

Query: 1033 STFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            S  A KRV+ E+ L + AF+ V+GEIESRF ++ V PGEM+G +AAQSI
Sbjct: 941  SRLAFKRVVTEYALNKLAFQNVLGEIESRFCRAAVNPGEMVGVLAAQSI 989


>gi|119643505|gb|ABL85574.1| RNA polymerase II largest subunit [Cetraria islandica]
          Length = 1003

 Score = 1024 bits (2648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/977 (54%), Positives = 685/977 (70%), Gaps = 43/977 (4%)

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEID--VPGQDGEEPLKKNKGGCGAQQPKL 178
            F  A++ R+PK R   +   C+ K  CE    +D   P    +EP + + GGCG  QP++
Sbjct: 48   FADAMRRRDPKKRFDSVWRLCRPKMICETTMALDDDAPSDKAKEP-RHDHGGCGNIQPEV 106

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              EG+K+   +KAQ+   +++ Q PE    K+ +T +  L + + IS +D + +GL+  Y
Sbjct: 107  RREGLKLTGTWKAQKGDEENEGQQPE----KKPITPQMALNIFRHISADDIKRMGLSNDY 162

Query: 239  ARPDWMILQVLPIPPPPV------------RPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
            ARP+WMI+ VLP+PPPPV            R  DDLT++L  IIR N N RR E  G+PA
Sbjct: 163  ARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLGDIIRANGNARRCETEGSPA 222

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            H+++EF QLLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVD
Sbjct: 223  HVVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVD 282

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP +++D++GVP SIA  LTYPE VTPYNI++L +LV+ GP+  PG   AK
Sbjct: 283  FSARTVITGDPNLSLDEVGVPRSIARTLTYPEXVTPYNIQKLHQLVKNGPNEHPG---AK 339

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            Y+IRD G+R+DLR+ K++ +  L+ G+KVERH+ DGD+++FNRQPSLHK S+MGHR+++M
Sbjct: 340  YVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHRVRVM 399

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            PYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGI
Sbjct: 400  PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNGPLMGI 459

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDTL G  K+ +RD F+ K+  MNIL+W  D+DG +PQP I+KP  +WTGKQ+ +L+IP
Sbjct: 460  VQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPLAMWTGKQILSLVIP 519

Query: 587  KQINLFRTA--AWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
              +NL R +   +   ND G+L +G        GEL+ G L KK +G S G +IH+++ E
Sbjct: 520  TGLNLLRGSEEGFSPLNDDGLLISG--------GELMYGLLNKKVVGASGGGVIHIVFNE 571

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
             GP+AA  F    Q +VNYWLL N FSIGIGDTI D  T+  I + +   K  V  +   
Sbjct: 572  KGPEAAMSFFNGAQTVVNYWLLHNGFSIGIGDTIPDRNTIAQIEEAVILQKKEVAAITLS 631

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            A    LE  PG  + E+FE+KV++ LN ARD+AG+  +KSL + NN   M  +GSKGS I
Sbjct: 632  ATANELESLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMARSGSKGSTI 691

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFH
Sbjct: 692  NISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFH 751

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D V
Sbjct: 752  AMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGV 811

Query: 885  WIESQTLDSLKMKKSEFDKAFRFE-MD---EENWNPNYMLQ--EYIDDLKTIKELRDVFD 938
             IE Q +D +     +F++ FR + MD   E + +P ++ Q  E I D++T K L    D
Sbjct: 812  HIEQQRVDIIACSTKQFERKFRVDLMDSKPETSISPEFLEQANEMIGDVETQKHL----D 867

Query: 939  AEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
             E ++LE DR +L          +  LP+N+ R++  A+ TFK+     S++HP EV+  
Sbjct: 868  DEYRQLEKDRAELRKN-RQDDTENLQLPLNVIRILDTAKTTFKIKNGARSNLHPAEVIPQ 926

Query: 999  VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            V  L +RL VV G D LS EAQ NATL F I LRS  A KR++ E+ L + AF+ V+GEI
Sbjct: 927  VQDLLDRLVVVRGTDKLSEEAQHNATLLFKIQLRSRLAFKRLVMENSLNKLAFQHVLGEI 986

Query: 1059 ESRFLQSLVAPGEMIGC 1075
            ESRF ++ V PGEM+G 
Sbjct: 987  ESRFCRAAVNPGEMVGV 1003


>gi|119643881|gb|ABL85592.1| RNA polymerase II largest subunit [Degelia plumbea]
          Length = 1002

 Score = 1024 bits (2647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/973 (54%), Positives = 679/973 (69%), Gaps = 36/973 (3%)

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            F  AL+ R+PK R   I   CK K  CE     +    D     K + GGCG  QP++  
Sbjct: 48   FADALRYRDPKRRFDAIWRLCKPKMTCETASAAEDDNIDKSREPKHDHGGCGNIQPEVRR 107

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            EG+++   +KAQ+   +++ Q PE    K+ +T +  L + + IS E+ + +GL+  YAR
Sbjct: 108  EGLRLNGTWKAQKGDEENEGQQPE----KKPITPQMALNIFRHISTEEIKKMGLSNDYAR 163

Query: 241  PDWMILQVLPIPPPP------------VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            P+ MI+ VLP+PPPP            +R  DDLT++L  IIR N N+RR E  G+PAH+
Sbjct: 164  PEXMIITVLPVPPPPVRPSISVDGGNGMRGEDDLTYKLGDIIRANGNVRRCETEGSPAHV 223

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            + EF QLLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFS
Sbjct: 224  VMEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFS 283

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            ARTVIT DP +++D++GVP SIA  LTYPETVTPYNI++L +LV+ GP+  PG   AKY+
Sbjct: 284  ARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG---AKYV 340

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            IR+ G+R+DLR+ K++ +  L+ G+KVERH+ DGDF++FNRQPSLHK S MGHR+++MPY
Sbjct: 341  IRESGERIDLRHHKRAGEISLQYGWKVERHIIDGDFIIFNRQPSLHKESTMGHRVRVMPY 400

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNLSVTSPYNADFDGDEMN+HVPQS ETRA + +L MVP  IVSPQ N P+MGIVQ
Sbjct: 401  STFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAGINQLCMVPLNIVSPQRNGPLMGIVQ 460

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQ 588
            DTL G  K+ +RD F+ K+  MNIL+W  D+DG +PQP ILKPRP WTGKQ+ +L+IP  
Sbjct: 461  DTLCGIYKLCRRDVFLSKEQVMNILLWIPDWDGILPQPAILKPRPKWTGKQIISLVIPSG 520

Query: 589  INLFRTAA--WHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            +NL R     +   ND G+L +G        G+L+ G L KK++G ++  +IH+I+ E G
Sbjct: 521  LNLTRAGGEGFSPLNDDGLLVSG--------GKLMYGLLSKKSVGATSSGIIHIIFNEKG 572

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
            P+ A KF    Q +VNYWLL N FSIGIGDTI D  T++ I D ++K K +V  + + A 
Sbjct: 573  PEVAMKFFNGAQTVVNYWLLHNGFSIGIGDTIPDRGTIKQIEDAVNKQKEDVAVITQSAT 632

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
               LEP PG  + E+FE+KV++ LN ARD+AG+  +KSL + NN   M  +GSKGS INI
Sbjct: 633  ANELEPLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMALSGSKGSTINI 692

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM
Sbjct: 693  SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 752

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
             GREGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D+V I
Sbjct: 753  AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDAVHI 812

Query: 887  ESQTLDSLKMKKSEFDKAFRFE-MD---EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQ 942
            ESQ +D +     +F K FR + MD   E + +  ++  E + D+     L+   D E  
Sbjct: 813  ESQRVDIITCSDEQFKKKFRVDLMDPRPETSISSEFL--EQVQDMLGDSHLQAYLDEEYD 870

Query: 943  KLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            +L+A R  L        D    LP+N+ R++  A+ TFK+     S++HP +VV  V  L
Sbjct: 871  QLKAAREFLRVNKQDDND-QLQLPINVIRILDTAKTTFKIKDGARSNLHPSDVVPQVQNL 929

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
             ERL VV G+D LS E Q NATL F   LRS  A KR++ E  L + AF+ V+GEIESRF
Sbjct: 930  LERLIVVRGDDALSKEGQHNATLLFKAQLRSRLAFKRLVMESSLNKLAFQHVLGEIESRF 989

Query: 1063 LQSLVAPGEMIGC 1075
             ++ V PGEM+G 
Sbjct: 990  CRAAVNPGEMVGV 1002


>gi|123979346|gb|ABM81498.1| RNA polymerase II largest subunit [Nephroma parile]
          Length = 979

 Score = 1023 bits (2646), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/999 (52%), Positives = 692/999 (69%), Gaps = 38/999 (3%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            FM  +  ++ +VC NC KIL DE    F  AL+ R+PK R   I   CK+K  CE     
Sbjct: 1    FMTKIKKLLETVCHNCGKILVDESHPAFADALRFRDPKRRFDAIWRLCKSKMICEASVAP 60

Query: 154  DVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLT 213
            D    D  +  K + GGCG  QP++  EG+++   +K Q+  ++++ Q PE    K+ +T
Sbjct: 61   DDDNPDRSKEPKHDHGGCGNVQPEVRREGLRLNGTWKPQKGDDENEGQQPE----KKPIT 116

Query: 214  AERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP------------VRPSDD 261
             +  L + +RIS E+   +GL+  YARP+WMI+ VLP+PPPP            +R  DD
Sbjct: 117  PQMALNIFRRISTEEITKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGMRGEDD 176

Query: 262  LTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 321
            LT++L  IIR N N+RR E  G+PAH++ EF QLLQFH+ATY DN++ GQP+A Q+SGRP
Sbjct: 177  LTYKLGDIIRANGNVRRCETEGSPAHVVVEFEQLLQFHVATYMDNDIAGQPQALQKSGRP 236

Query: 322  IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 381
            +KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPETVT
Sbjct: 237  VKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVT 296

Query: 382  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 441
            PYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KVERH+ D
Sbjct: 297  PYNIQKLHQLVKNGPNDHPG---AKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHIID 353

Query: 442  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 501
            GD+++FNRQPSL                TFRLNLSVT+PYNADFDGDEMN+HVPQS ETR
Sbjct: 354  GDYIIFNRQPSLXXXXXXXXXXXXXXXXTFRLNLSVTTPYNADFDGDEMNLHVPQSEETR 413

Query: 502  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 561
            AEV +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ KD  MNIL+W  D+DG
Sbjct: 414  AEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLNKDQVMNILLWVPDWDG 473

Query: 562  KVPQPTILKPRPLWTGKQVFNLIIPKQINLF--RTAAWHADNDKGILTAGDTLVRIEKGE 619
             +PQP ILKP+P WTGKQ+ +L++P  +NL+   +  +   ND+G+L +G        GE
Sbjct: 474  VLPQPAILKPQPKWTGKQIISLVVPPGLNLWTGSSEGYSPLNDEGLLVSG--------GE 525

Query: 620  LLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 679
            L+ G   KK++G S G ++H+I+ E GP+ A KF    Q +VNYWLL N FSIGIGDTI 
Sbjct: 526  LMYGLFKKKSVGNSPGGVVHIIFNEKGPETAMKFFNGAQTVVNYWLLHNGFSIGIGDTIP 585

Query: 680  DAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGS 739
            D  T++ I D ++K K+ V  + + A +  LEP PG  + E+FE+KV++ LN ARD+AG+
Sbjct: 586  DRNTIQRIEDAVNKQKDEVAEITRSATENELEPLPGMNVRETFESKVSKALNKARDDAGT 645

Query: 740  SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDD 799
              ++SL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDD
Sbjct: 646  VTEESLKDINNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDD 705

Query: 800  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
            Y PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M K
Sbjct: 706  YSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAK 765

Query: 860  YDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD---EENWN 915
            YDGTVRNSLGD++QF+YGEDG+D+V IESQT+D +     +F++ FR + MD   E + +
Sbjct: 766  YDGTVRNSLGDIVQFVYGEDGLDAVHIESQTMDIIACSDEQFERKFRVDVMDPRPEASIS 825

Query: 916  PNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWN 975
            P ++  E  ++L    E++   D E ++L+  R  L  +     D    LP+N+ R++ +
Sbjct: 826  PEFL--EQANELAGDLEIQGYLDEEYEQLQVAREFLRKD---KRDEQMQLPINVIRILDS 880

Query: 976  AQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1035
            A+ TFK+     S++HP EV+  V  L ERL VV G+D LS EAQ NAT+ F   LRS  
Sbjct: 881  AKTTFKIKDGARSNLHPAEVIPQVRDLLERLVVVRGDDDLSREAQHNATILFKAQLRSRL 940

Query: 1036 ASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIG 1074
            A KR++ E  L + AF  V+GEIESRF ++ + PGEM+G
Sbjct: 941  AFKRLVLESSLNKLAFGHVLGEIESRFCRAAINPGEMVG 979


>gi|397135816|gb|AFO11403.1| RNA polymerase I, partial [Candida boidinii]
          Length = 870

 Score = 1023 bits (2644), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/876 (58%), Positives = 648/876 (73%), Gaps = 25/876 (2%)

Query: 204  EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------- 256
            E  ER+  L +E +L + K IS EDC  LG N  +ARP+WMI+ VLP+PPPPV       
Sbjct: 8    EQNERRVLLPSE-ILNIFKHISVEDCNKLGFNEDFARPEWMIITVLPVPPPPVRPSVAFT 66

Query: 257  ---RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++LA +++ N N+++ E +G+P H I+EF  LLQ+HIATY DN++ GQPR
Sbjct: 67   DSKRSEDDLTYKLAEVLKANINVQKLEMDGSPQHTINEFEALLQYHIATYMDNDIAGQPR 126

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRPIKSI SRLK KEGR+RGNLMGKRVDFSARTVI+ DP + +DQ+GVP SIA  
Sbjct: 127  ALQKSGRPIKSIRSRLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIART 186

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPE VTPYNI++L E V  GP+  PG   AKY+IRD G R+DLRY K++ D  L+ G+
Sbjct: 187  LTYPEIVTPYNIQKLTEYVRNGPNEHPG---AKYVIRDSGDRIDLRYNKRAGDIQLQYGW 243

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 244  KVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS+ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD+FIE D  MNI 
Sbjct: 304  VPQSYETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFIEYDQVMNIC 363

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLV 613
             W  ++DG VPQP ILKP+PLW+GKQ+ ++ IPK I L R        D  +L   D+ +
Sbjct: 364  YWIPNWDGVVPQPAILKPKPLWSGKQMLSMCIPKGIFLQRL-------DGSLLCPKDSGM 416

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
             I  GE++ G + K T+G + G LIH    E GP       G+ Q +VN+WLL N FSIG
Sbjct: 417  LIINGEIMFGVVNKATVGATAGGLIHTTMREKGPYVCAGMFGNIQKVVNFWLLHNGFSIG 476

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGD IAD  TM+TI +TI+ AK  V+ +I  A    LEPEPG T+ ESFE KV+++LN A
Sbjct: 477  IGDAIADGATMKTITETIAVAKEKVQQVITDAHKNLLEPEPGMTVRESFEQKVSKILNEA 536

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RD AG SA+ SL +SNN+K MVTAGSKGS+INISQM+ACVGQQ VEGKRI FGF DR+LP
Sbjct: 537  RDAAGKSAEASLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRIRFGFSDRSLP 596

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HFTKDDY  ES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+
Sbjct: 597  HFTKDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 656

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM--DE 911
            EDIMV YD ++RNS+GD+IQFLYGEDG+D+  +E QT+D++    + F+K +R ++   E
Sbjct: 657  EDIMVHYDSSIRNSVGDIIQFLYGEDGLDATQVEKQTVDTIPGSTAAFEKRYRVDLMNAE 716

Query: 912  ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
            ++  P+Y+  EY  ++    EL+ + D E ++LE DR  L T    SGD +WPLPVN++R
Sbjct: 717  KSIRPDYI--EYGSEIVGDIELQKLLDEEWEQLEKDREFLRTVCFPSGDYNWPLPVNMRR 774

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            +I NAQ+ F VD  + SD+   E+V  V +L  +  VV G+  L  EAQ NATL F  L+
Sbjct: 775  IIQNAQQVFHVDQSKASDLTIPEIVRGVQELCSKFIVVRGDSDLQREAQANATLLFQCLV 834

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            RS  +++R+L+E++L R++FEWV+G IES+F +SLV
Sbjct: 835  RSRLSTRRILEEYKLNRDSFEWVLGNIESQFSRSLV 870


>gi|397135858|gb|AFO11424.1| RNA polymerase I, partial [Pichia membranifaciens]
          Length = 870

 Score = 1022 bits (2643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/882 (57%), Positives = 656/882 (74%), Gaps = 25/882 (2%)

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
            +DD E L    ER+Q + A  +L V + IS EDC  LG N ++ARP+WM+L VLP+PPPP
Sbjct: 4    DDDTENL----ERRQ-INASDILNVFRHISPEDCIKLGFNEEWARPEWMVLTVLPVPPPP 58

Query: 256  V----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
            V          R  DDLT++LA I++ N N+++ E +G+P H+ISEF  LLQ+H+ATY D
Sbjct: 59   VRPSVAFTDSKRSEDDLTYKLADILKANINVQKFEMDGSPQHVISEFEALLQYHVATYMD 118

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            N++ GQP+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP + +DQ+G
Sbjct: 119  NDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVG 178

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP SIA  LTYPE VTPYNI+ L E+V  GP+  PG   AKY+IR++G R+DLR+ K++ 
Sbjct: 179  VPRSIAKTLTYPEIVTPYNIQALTEMVRNGPNEHPG---AKYVIRENGDRIDLRFNKRAG 235

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
            D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+++MPYSTFR+NLSVTSPYNADF
Sbjct: 236  DIQLQYGWKVERHLMDNDPVLFNRQPSLHKMSMMCHRVRVMPYSTFRMNLSVTSPYNADF 295

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS+ETRAE+ EL  VP  I+SPQSN+PVMGIVQDTL G RK+T RD+F+E
Sbjct: 296  DGDEMNLHVPQSYETRAELSELCAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLRDSFLE 355

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGI 605
                M+I  W  D+DG +PQP ILKP+PLWTGKQ+ +L IPK I L R        D  +
Sbjct: 356  YSEVMSICYWIPDWDGVIPQPAILKPKPLWTGKQIMSLCIPKGIFLQRL-------DGSL 408

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
            L+  D+ + I  GE++ G + K T+G+S G LIH    E GP    K  G+ Q +VNYWL
Sbjct: 409  LSPKDSGMLILDGEIIFGVVNKATVGSSAGGLIHTTMREKGPTVCAKLFGNIQKVVNYWL 468

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGD IAD +TM+ I +TI +AK+ V+ +I+ AQ   LE EPG T+ ESFE K
Sbjct: 469  LHNGFSIGIGDAIADPETMKAITETIKEAKDKVQGVIRDAQKNLLEAEPGMTLRESFEQK 528

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            V+++LN ARD AG SA+ SL + NN+K MVTAGSKGS+INISQM+ACVGQQ VEGKRI F
Sbjct: 529  VSKILNEARDSAGKSAETSLKDDNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINF 588

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF DR+LPHFT DDY  ES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 589  GFADRSLPHFTTDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 648

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRL+KA+EDIMV YDGT RNSLGDVIQF+YGEDG+D+  +E QT+D++    S F++ +
Sbjct: 649  QRRLLKALEDIMVHYDGTTRNSLGDVIQFIYGEDGLDATTVEKQTVDTIPGSNSAFERKY 708

Query: 906  RFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL 965
            R ++ +E  +    + EY  ++    +L+ + D E ++L +DR  L T++  +GD++WPL
Sbjct: 709  RVDLMDEKMSIRSDMVEYGTEILGDIKLQKILDEEYEQLLSDRDYLRTKVFPNGDNNWPL 768

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
            PVN++R++ NAQ+ F VD  + SD+   E+V+ V KL E   V+ G      EA+KN+TL
Sbjct: 769  PVNVRRIVQNAQQIFHVDRYKASDLTISEIVKTVQKLCENFTVIRGNGGCLTEAKKNSTL 828

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
             F  L+RS  A++R+L+E+RL R+AFEWV+G +E +F +SLV
Sbjct: 829  LFQCLIRSKLATRRILEEYRLNRDAFEWVVGTVEQQFARSLV 870


>gi|397135904|gb|AFO11447.1| RNA polymerase I, partial [Meyerozyma guilliermondii]
          Length = 872

 Score = 1022 bits (2643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/883 (58%), Positives = 647/883 (73%), Gaps = 22/883 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN D+ + PE    ++ LT   +L V K I+ EDC  LG N  YARP+WM++ VLP+PPP
Sbjct: 2    KNYDETEQPE----RRLLTPSEILNVFKHINSEDCVRLGFNEDYARPEWMLITVLPVPPP 57

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT +LA +I+ N N++R E +G+P H+ISEF  LLQFH+ATY 
Sbjct: 58   PVRPSIAFNDTARGEDDLTFKLADVIKANINVQRLELDGSPQHVISEFEALLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPE VTPYNI RL E V  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 178  GVPISIARTLTYPEIVTPYNIHRLTEYVRNGPNEHPG---AKYVIRDTGDRIDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ E+  VP  IVSPQSN+PVMGIVQDTL G RK+T RD FI
Sbjct: 295  FDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MN+L W  D+DG +P P ++KP+PLWTGKQ+ ++ IPK I++ R      D    
Sbjct: 355  EYDQVMNMLYWIPDWDGVIPPPAVIKPKPLWTGKQLLSMAIPKGIHIQRL-----DGGTS 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  DT + I  GE++ G + KKT+G ++G LIH +  E GP    K     Q +VNYW
Sbjct: 410  MLSPKDTGILIVDGEIMFGVVDKKTVGATSGGLIHTVMREKGPQVCAKLFSALQKVVNYW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIAD+ TM+T+  TI +AK  V+ +I  AQ   LEPEPG T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADSDTMKTVTTTIEEAKQKVQEIILDAQKNRLEPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ +L + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  NVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +ESQ++D +      F++ 
Sbjct: 650  IQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGVDGTQVESQSVDVIPGTDESFERR 709

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            +R ++ +        L E   +++    L+ V D E ++L  DR  L     T+GD +WP
Sbjct: 710  YRVDLLDPEKCIRDSLLESGKEVRGDVNLQRVLDEEYEQLCNDRRYLREVCFTNGDYTWP 769

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVNL+R+I NAQ+ F     + SD+   E+VE V +L ++L V+ G+ PL  E+Q+NAT
Sbjct: 770  LPVNLRRIIQNAQQLFHGGRHKASDLRLEEIVEGVKELCKKLLVLRGDSPLVKESQENAT 829

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L F  L+RS  A++RV++E RL R +FEWV+GEIE++F +SLV
Sbjct: 830  LLFQCLVRSRLATRRVIEEFRLNRMSFEWVMGEIETQFQKSLV 872


>gi|397135971|gb|AFO11480.1| RNA polymerase I, partial [Botryozyma nematodophila]
          Length = 872

 Score = 1022 bits (2642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/878 (58%), Positives = 651/878 (74%), Gaps = 20/878 (2%)

Query: 200  EQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP------ 253
            E+L +P ER+Q LT   +L V K +S  D Q LGLN  YARP+WMI+ VLP+PP      
Sbjct: 5    EELDQP-ERRQ-LTPSEILNVFKHMSGTDIQRLGLNEDYARPEWMIITVLPVPPPPVRPS 62

Query: 254  ----PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELP 309
                   R  DDLT++LA I++ N N++R ++ GAPAH+++EF  LLQFH+ATY DN++ 
Sbjct: 63   VAINETARGEDDLTYKLADILKANANVQRCDQEGAPAHVVNEFETLLQFHVATYMDNDIA 122

Query: 310  GQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWS 369
            GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP S
Sbjct: 123  GQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 182

Query: 370  IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHL 429
            IA  LTYPE VTPYNI +L +L+  GP+  PG   AKY+IRD G+R+DLRY K++ D  L
Sbjct: 183  IARTLTYPEIVTPYNINKLSQLIRNGPNEHPG---AKYVIRDTGERIDLRYHKRTGDIPL 239

Query: 430  ELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDE 489
            + G+ VERH+ DGD VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDE
Sbjct: 240  QYGWIVERHIQDGDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDE 299

Query: 490  MNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVF 549
            MN+HVPQS ETRAE+ +L MV   IVSPQSN+PVMGIVQD+L G RK+TKRDTFI  +  
Sbjct: 300  MNLHVPQSEETRAELSQLCMVSLQIVSPQSNKPVMGIVQDSLCGIRKLTKRDTFITFEEM 359

Query: 550  MNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAG 609
            M+ILMW  D++G V QP I++P+PLWTGKQV ++ IPK IN+ R      +   G L+  
Sbjct: 360  MDILMWVPDWNGIVVQPAIIRPKPLWTGKQVISMCIPKGINIQR-----YEEGTGKLSPT 414

Query: 610  DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
            D  + ++ GE++ G + KKT+G   G LIH I  E G      F    Q +VN+WLL N 
Sbjct: 415  DNGMLVDNGEIIYGVVDKKTVGGKEGDLIHTIMREKGNVVCCNFFTGIQQVVNFWLLHNG 474

Query: 670  FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
            FSIGIGDTIADA TM  I  TI +AK  V+ +I  A+   L  EPG T+ ESFE+KV+Q 
Sbjct: 475  FSIGIGDTIADAATMTDITRTIDEAKEKVQQIITDAEANKLPAEPGMTVRESFEHKVSQT 534

Query: 730  LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
            LN ARD AG SA+ SL +SNN+K MV AGSKGSFINISQM+ACVGQQ VEGKRIPFGF  
Sbjct: 535  LNQARDVAGRSAEISLKDSNNVKQMVIAGSKGSFINISQMSACVGQQIVEGKRIPFGFKY 594

Query: 790  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 849
            RTLPHFTKDDY PESRGF+ENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRL
Sbjct: 595  RTLPHFTKDDYSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRL 654

Query: 850  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM 909
            VKA+ED+MV+YD TVRNSLGD+IQF+YGEDG+D   +E QT+D++      F++ +R ++
Sbjct: 655  VKALEDVMVQYDTTVRNSLGDIIQFIYGEDGLDGAQVEKQTIDTIPGSDEAFERRYRIDL 714

Query: 910  DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNL 969
             ++  + N  L E  +++     ++ V D E  +L  DR  L  ++  +GD++WPLPVNL
Sbjct: 715  MDQEKSLNPSLLEVGNEIIGDISVQRVLDEEFAQLLDDRQYLRNKVFLNGDNNWPLPVNL 774

Query: 970  KRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNI 1029
            +R+I N+Q+ F++D  + SD+ P EVVE V  L + + ++ G+D L+ EAQ+NATL F  
Sbjct: 775  RRVIQNSQQIFRLDQYKASDLTPTEVVEKVRNLLDNIPIIRGDDYLTKEAQENATLLFKC 834

Query: 1030 LLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L+RS  A+KRV +E+ L R AF WVIGEIES+F +++V
Sbjct: 835  LVRSRLAAKRVFEEYHLNRHAFLWVIGEIESQFSRAIV 872


>gi|397135814|gb|AFO11402.1| RNA polymerase I, partial [Ambrosiozyma monospora]
          Length = 870

 Score = 1022 bits (2642), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/882 (57%), Positives = 653/882 (74%), Gaps = 23/882 (2%)

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
            N D+E   + +E++Q + +E +L + K IS EDC  LG N  YARP+WM++ VLP+PPPP
Sbjct: 2    NVDEE--SDTIEKRQLMPSE-ILNIFKHISPEDCVKLGFNEDYARPEWMLITVLPVPPPP 58

Query: 256  V----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
            V          R  DDLT++LA I++ N N+++ E +G+P H+ISEF  LLQ+H+ATY D
Sbjct: 59   VRPSVAFTDSKRSEDDLTYKLADILKANINVQKMEMDGSPQHVISEFEALLQYHVATYMD 118

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            N++ GQP+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+G
Sbjct: 119  NDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVG 178

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP SIA  L+YPE VTPYNI++L ELV  GP+  PG   AKY+IRD G R+DLR+ K++ 
Sbjct: 179  VPKSIAKTLSYPEIVTPYNIQKLTELVRNGPNEHPG---AKYVIRDSGDRIDLRFNKRAG 235

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
            D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFR+NLSVT+PYNADF
Sbjct: 236  DIQLQYGWKVERHLMDNDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRMNLSVTTPYNADF 295

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS+ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD FIE
Sbjct: 296  DGDEMNLHVPQSYETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGARKMTLRDIFIE 355

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGI 605
             D  MNI  W  ++DG VPQP I+KP+PLW+GKQ+ +L IPK I L R        D  +
Sbjct: 356  YDQVMNICFWIPNWDGVVPQPCIMKPKPLWSGKQMMSLCIPKGIFLQRL-------DGPL 408

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
            +   D+ + +  GE++ G + K T+G S G LIH    E GP    +  G+ Q +VN+WL
Sbjct: 409  ICPKDSGMLVVNGEIMFGVVNKATIGASAGGLIHTTMREKGPQVCAQLFGNIQKVVNFWL 468

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGD IAD  TM+ I +TI+ AK+ V+ +I  AQ+  LE EPG T+ ESFE K
Sbjct: 469  LHNGFSIGIGDAIADPDTMKNITETIATAKDKVQGVIMDAQNNRLEAEPGMTVRESFEQK 528

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            V+ +LN ARD AG SA+ SL +SNN+K MVTAGSKGS+INISQM+ACVGQQ VEGKRI F
Sbjct: 529  VSNILNKARDVAGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINF 588

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF DR+LPHFTKDDY  ES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 589  GFADRSLPHFTKDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 648

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRL+KA+EDIMV YDGT RNSLGD+IQFLYGEDG+D   +E QT+D++    + F+K +
Sbjct: 649  QRRLLKALEDIMVHYDGTTRNSLGDIIQFLYGEDGLDPTQVEKQTVDTIPGSDAAFEKKY 708

Query: 906  RFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL 965
            R ++          + EY  ++    +L+ + D E ++L  DR  L  E  T+G+++WPL
Sbjct: 709  RVDLMNSEMAIRPDVVEYGSEILGDIQLQKILDEEYEQLLNDRAYLRNECFTTGENNWPL 768

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
            PVNL+R+I NAQ+ F VD  + SD+   E+V  V +L ++  VV GE  +  EAQ+NATL
Sbjct: 769  PVNLRRIIQNAQQIFHVDHTKASDLTIPEIVRGVQELCKKFIVVRGEGEVLHEAQENATL 828

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
             F  L+RS  A++RVL+E RLTR+AF+WV+G IE +FL+SLV
Sbjct: 829  LFQCLVRSRLATRRVLEEFRLTRDAFDWVVGTIEEKFLRSLV 870


>gi|397135916|gb|AFO11453.1| RNA polymerase I, partial [Babjeviella inositovora]
          Length = 872

 Score = 1021 bits (2641), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/886 (57%), Positives = 644/886 (72%), Gaps = 28/886 (3%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP- 253
            KN ++ + PE    ++ LT   +L V K IS EDC  LG N  YARP+WM++ VLP+PP 
Sbjct: 2    KNYEENEQPE----RRVLTPTEILNVFKHISPEDCHRLGFNEDYARPEWMLITVLPVPPP 57

Query: 254  ---------PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT++LA +++ N ++++ E +G+P H+ISE   LLQFH+ATY 
Sbjct: 58   PVRPSIAFNETARGEDDLTYKLAEVLKTNISVQKLEMDGSPQHVISEIETLLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQAMQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPE VTPYNI RL ELV  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 178  GVPKSIARTLTYPEIVTPYNIHRLTELVRNGPNEHPG---AKYVIRDTGDRIDLRYHKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ ++  VP  I+SPQSN+P+MGIVQDTL G RK+T RD F+
Sbjct: 295  FDGDEMNLHVPQSEETRAELSQICAVPLQIISPQSNKPIMGIVQDTLCGVRKMTLRDNFV 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR---TAAWHADN 601
            E D  MN+  W  D+DG +P+P ILKP+PLWTGKQ+ +L IPK I+L R    A+W +  
Sbjct: 355  EYDQVMNMCFWIPDWDGVIPEPAILKPKPLWTGKQLLSLCIPKGIHLQRFDGGASWSSPT 414

Query: 602  DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            D G+L        I  GE+L G + KKT+G + G LIH +  E G     K  G+ Q +V
Sbjct: 415  DSGML--------IIDGEVLFGVVDKKTVGATAGGLIHTVMREKGSAVCAKLFGNMQKVV 466

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            N+WLL N FSIGIGDTIADA TM  I +TIS+AK  V+ +I  A   +LEPEPG T+ ES
Sbjct: 467  NFWLLHNGFSIGIGDTIADASTMREITNTISEAKEKVQEIILLAHLNTLEPEPGMTLRES 526

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FEN V++VLN ARD AG SA+ +L + NN+K MV  GSKGSFINISQM+ACVGQQ VEG+
Sbjct: 527  FENNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVCGSKGSFINISQMSACVGQQIVEGR 586

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF DRTLPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+E
Sbjct: 587  RIPFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAE 646

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+EDIMV YD T RNSLGDVIQF+YGEDG+D   +E QT+D++      F
Sbjct: 647  TGYIQRRLVKALEDIMVHYDSTARNSLGDVIQFVYGEDGIDGTQVEKQTIDTIPGSDVVF 706

Query: 902  DKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDS 961
            D+ +R ++ +     N  L E   ++    +L+ + D E  +L +DR  L      +GD 
Sbjct: 707  DRRYRIDLLDNTHGINPSLLESGSEIVGDVKLQKIVDEEYNQLLSDRKYLREVCFPNGDH 766

Query: 962  SWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQK 1021
            +WPLPVNL+R++ NAQ+ F VD  + SD+   E+V  V  L  +L V+ G+  L  EAQ 
Sbjct: 767  NWPLPVNLRRVVQNAQQIFHVDRAKASDLTLDEIVTKVQVLCSKLLVIRGKTELMQEAQS 826

Query: 1022 NATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            NATL F  LLRS  +++RVL+E+RL R AF+W++GE+E++F +S+V
Sbjct: 827  NATLLFLCLLRSRLSARRVLEEYRLNRLAFDWIVGEVEAQFQKSIV 872


>gi|327242125|gb|AEA40841.1| RNA polymerase II largest subunit [Tritrichomonas foetus]
          Length = 1293

 Score = 1021 bits (2640), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 577/1318 (43%), Positives = 819/1318 (62%), Gaps = 101/1318 (7%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            HL+LA+P+FHIG++  V  +M+ +C  C ++  +  + +F++ +K  + K RL  + + C
Sbjct: 1    HLKLAEPLFHIGYLDVVYKLMQCICHRCGRLKVNYAEPEFQRIIKNYHGKQRLIHMHEFC 60

Query: 142  KNKTKC---------------------EGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
             ++ KC                     E G EI+   Q  E+   +NK  C    P+++ 
Sbjct: 61   SSRKKCDHVKVPTPETPDVVKDISFWKELGVEIENEAQLSEDL--RNKTPCSHDVPEISR 118

Query: 181  E--GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
            +  G   + E+       D              ++A ++L + K++SD D   LGL+PK 
Sbjct: 119  DEDGNFRLKEHSGGGGGID-------------IISASQILEIFKQMSDYDILALGLDPKR 165

Query: 239  ARPDWMILQVLPIPPPPVR---------PS-DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            + P+WMI  VLPIPPP VR         PS DD+TH+LA II+ N +L + ++ GA    
Sbjct: 166  SHPEWMICTVLPIPPPHVRPPVRAEGSAPSQDDVTHKLASIIQANNHLLKLKQEGAQQVA 225

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            ++E  +LLQ+H+ TYF N+ P   RAT ++G+PIK+I  RLK KEG IRG+L GKRVDFS
Sbjct: 226  LNENIELLQWHVTTYFINDKPSIKRATTKNGKPIKAISQRLKGKEGHIRGHLSGKRVDFS 285

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            AR+VI+PDP+I IDQ+GVP  IA  LT+PE VTP N E L +LV  GP    G   A YI
Sbjct: 286  ARSVISPDPSIRIDQVGVPQEIAKILTFPEVVTPRNREELTKLVINGPEELKG---ANYI 342

Query: 409  IRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
            I     ++DL +  + +  HL+    VERHL DGD V+FNRQPSLHKMS+MGH   I+P 
Sbjct: 343  ITPQQMKIDLSHATERTAIHLDDLAIVERHLTDGDIVIFNRQPSLHKMSMMGHHALILPG 402

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
            STFRLNL VT+PYNADFDGDEMN+HVPQ+   RAEV  +M+VP  I++PQ N+P++G+VQ
Sbjct: 403  STFRLNLCVTTPYNADFDGDEMNLHVPQTQSARAEVKHIMLVPNQIITPQGNKPIIGLVQ 462

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV-PQPTILKPRP---LWTGKQVFNLI 584
            D+LL CR ++ + +F+ ++  MN++MW       V P P I+ P     LW+GKQVF+L 
Sbjct: 463  DSLLACRLLSLKSSFLNRNEMMNLMMWVRSKQNLVLPPPCIIHPGNKVFLWSGKQVFSLF 522

Query: 585  IPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
            +P   + F      A      +   DT + I  G+LL+G L K T+  S  SL HV+   
Sbjct: 523  LPSINHDFVQKG--AKEPGSWIPVDDTRIIIRDGQLLAGILDKDTVAKSEKSLAHVVINS 580

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
               + AR FL  TQ +VN WL    FSIG+ D +A  KT ET++  I   +++VK +I +
Sbjct: 581  WDKNLARDFLSETQMVVNSWLESRGFSIGLIDAVATDKTNETVDQQIRDLESDVKEIISR 640

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
             Q   L  +PG T++ESFE +VN  LN A D  GS+ QKS    N+L  MV AGSKGS +
Sbjct: 641  TQKGQLTIQPGMTLIESFEREVNTKLNKAIDACGSTVQKSSRFWNSLVQMVKAGSKGSLL 700

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQ+ A VGQQN+EGKRI FGF +RTLPHFTKDD+G ESRGF  + +L GL P EFFFH
Sbjct: 701  NISQIIATVGQQNIEGKRIRFGFKNRTLPHFTKDDFGLESRGFCRHCFLEGLNPPEFFFH 760

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AM GREG+IDTA KTS+TGYIQRRL K+ME   V YDGTVRNSL +VIQF+YG DG+D V
Sbjct: 761  AMAGREGIIDTACKTSDTGYIQRRLCKSMESHCVMYDGTVRNSLNEVIQFIYGGDGLDPV 820

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTI-KELRDVFDAEVQK 943
             +E+Q L  +     +FD+ FRF++ +  +    M QE +D+L +     ++  D E+ +
Sbjct: 821  GLETQNLTFMGDSDEDFDRKFRFDLTQAAFGQGIMDQEIVDELMSNPNHTKNRLDHEINR 880

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRR-PSDMHPMEVVEAVDKL 1002
            L   R  L  EI T   +   LPVN++RLI +AQ++  ++P    S+++P+ V++ V++L
Sbjct: 881  LLKFRQILREEIFTDASNKVWLPVNIRRLIESAQQSHHINPHSDKSNLNPLTVIQKVEEL 940

Query: 1003 QERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
             ++L +V GED LS EAQ NATL   I + S  ASK V+ +HRLT +A  +V+GEI++RF
Sbjct: 941  VDQLVIVKGEDALSREAQDNATLLLRIHIFSNLASKPVIFQHRLTEQALIFVLGEIKTRF 1000

Query: 1063 LQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKT 1122
            +Q++V+PGEM+G +A QSIGEP+TQMTLNTFH+AGVSAKNVTLGVPRL E++N+A+ +KT
Sbjct: 1001 VQTIVSPGEMVGTIAGQSIGEPSTQMTLNTFHFAGVSAKNVTLGVPRLNEVMNLARVMKT 1060

Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
            P ++V+L+P     K++AK++Q  LE ++L+ +   +E++YDP  M ++IEED E+ + Y
Sbjct: 1061 PQVTVYLEPDSRGDKDKAKDIQAELEXSSLKKLVARSEIYYDPSDMNSMIEED-EWAR-Y 1118

Query: 1183 YEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADK 1242
                D       +SPW+LR+ LN+  +VDK ++   + EKIN  + +    I N+ ++  
Sbjct: 1119 QGRED----SSNLSPWVLRLVLNQAALVDKNINPIEIVEKINILYANVYYAITNEGSSGD 1174

Query: 1243 LILRIR-IMNDEAPKG------ELNDESAEDDVFLKKI------------------ESNM 1277
             I+RIR +MND++ +       +  ++   D + LK I                  ESN 
Sbjct: 1175 PIIRIRGLMNDKSFEDKDGRALQFAEQHLYDSLSLKGIEGINRAVMEETTRYEVDPESNA 1234

Query: 1278 LT---------EMAL--RGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                       E  L   G  L  V+ H  VD RR+ SN+++E +E+LGIEA R+++L
Sbjct: 1235 FNTERKECKHKEWVLYTEGSALREVLNHPRVDCRRSVSNNILETLEILGIEAARQSIL 1292


>gi|119643929|gb|ABL85595.1| RNA polymerase II largest subunit [Xanthoria polycarpa]
          Length = 1020

 Score = 1020 bits (2638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 529/991 (53%), Positives = 691/991 (69%), Gaps = 38/991 (3%)

Query: 120  KFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
            ++ +AL+ R+PK R + I  A K K  CE     D    +  +  + + GGCG  QP++ 
Sbjct: 47   EYVEALRHRDPKRRFELIWRASKKKLICETSMPADDDNPEKAKSQRHDHGGCGNIQPEIR 106

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
             E +K+   +KAQ+  ++ + Q  E    K+ +T +  L + + IS +D + +GL+  YA
Sbjct: 107  REALKLTGTWKAQKGDDEHEGQQAE----KKPITPQMALNIFRNISTDDIKDMGLSNDYA 162

Query: 240  RPDWMILQVLPIPP------------PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAH 287
            RP+WMI+ VLP+PP              +R  DDLT++L  IIR N N++R +  G+P H
Sbjct: 163  RPEWMIITVLPVPPPPVRPSISMDGGAGMRGEDDLTYKLGDIIRANGNVKRCDIEGSPQH 222

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            +I EF  LLQFH+ATY DN + G P+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDF
Sbjct: 223  LIQEFESLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 282

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVIT DP +++D++GVP SIA  LTYPETVTPYNI +L ELV+ GP+  PG   AKY
Sbjct: 283  SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHELVKNGPNEHPG---AKY 339

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            +IRD G+R+DLR+ K++ D +L  G+KVERH+ DGD+++FNRQPSLHK S+MGHR+++MP
Sbjct: 340  VIRDSGERIDLRHHKRAGDINLAYGWKVERHIVDGDYIIFNRQPSLHKESMMGHRVRVMP 399

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            YSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L MV   IVSPQ N P+MGIV
Sbjct: 400  YSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEISQLCMVSLNIVSPQRNWPIMGIV 459

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL G  K+ +RD  + +   MNIL+W  D+DG +PQP ILKP+P WTGKQ+ +LI+P 
Sbjct: 460  QDTLCGIYKMCRRDVVLSEAQVMNILLWVPDWDGVIPQPAILKPQPRWTGKQIISLILPA 519

Query: 588  QINLFRTAAWHADNDKGILT-AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
             +N +R        +K + +   D  V ++ GEL+ G L K  +G S   +IH+I+ E G
Sbjct: 520  TLN-YRQIEKEKKTEKPLFSPLKDEGVMVDSGELMFGLLKKSAVGASKQGIIHIIFNEKG 578

Query: 647  PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
            P+AA  F    Q +VNYWLL N FSIGIGDTI D KT++ I D +S+ K+ V  + + A 
Sbjct: 579  PEAALNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRKTIQGIEDAVSEQKSAVTEITRLAT 638

Query: 707  DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
               LE  PG ++ E+FE+KV   LN AR+ AG+  Q+SL + NN   M  +GSKGS INI
Sbjct: 639  ADQLESLPGMSIRETFESKVQAALNQARENAGTKTQESLKDLNNGVQMALSGSKGSTINI 698

Query: 767  SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            SQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM
Sbjct: 699  SQMTAIVGQQAVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAM 758

Query: 827  GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
             GREGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGDV+QFLYGEDG+D+V I
Sbjct: 759  AGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDVVQFLYGEDGLDAVHI 818

Query: 887  ESQTLDSLKMKKSEFDKAFRFEMDE---ENWNPNYMLQ---EYIDDLKTIKELRDVFDAE 940
            ESQ +D +K    +F++  R ++ +   E   P+ +L+   E   DL    +++   D E
Sbjct: 819  ESQPVDIVKCSNGQFERKCRVDLMDPRPETSIPSELLECSKEIAGDL----DVQGHLDEE 874

Query: 941  VQKLEADRYQLATEIATSG--DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
             ++L     Q A E    G  D S  LP+N+ R++ NA+  FK+     S++HP EV+  
Sbjct: 875  YEQL-----QKAREFLREGKTDDSAYLPLNIIRILENAKAAFKIRNNARSNLHPAEVIPQ 929

Query: 999  VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            V++L +RL +V G+DPLS EAQ NATL F   LRS  A KR++ E+ L + AF+ V+GEI
Sbjct: 930  VNELLDRLVIVRGDDPLSQEAQHNATLLFKAQLRSRLAFKRLVLENSLNKLAFQHVLGEI 989

Query: 1059 ESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1089
            ES+F ++ V PGEM+G +AAQSIGEPATQMT
Sbjct: 990  ESKFCRAAVNPGEMVGVLAAQSIGEPATQMT 1020


>gi|397135856|gb|AFO11423.1| RNA polymerase I, partial [Saturnispora dispora]
          Length = 870

 Score = 1019 bits (2636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/874 (58%), Positives = 650/874 (74%), Gaps = 21/874 (2%)

Query: 204  EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------- 256
            E +ER+Q   ++ VL V K+IS ED   LG N ++ARP+WMIL VLP+PPPPV       
Sbjct: 8    ENLERRQIHPSD-VLNVFKQISKEDSNKLGFNEEWARPEWMILTVLPVPPPPVRPSVAFT 66

Query: 257  ---RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++LA I++ N N+++ E +G+P H+ISEF  LLQ+H+ATY DN++ GQP+
Sbjct: 67   DSKRSEDDLTYKLADILKANINVQKFEMDGSPQHVISEFEALLQYHVATYMDNDIAGQPQ 126

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP + +DQ+GVP SIA  
Sbjct: 127  ALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGVPRSIART 186

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPE VTPYNI++L E+V  GP+  PG   AKY+IRD+G R+DLR+ K++ D  L+ G+
Sbjct: 187  LTYPEIVTPYNIQKLTEMVRNGPNEHPG---AKYVIRDNGDRIDLRFNKRAGDIQLQYGW 243

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFR+NLSVTSPYNADFDGDEMN+H
Sbjct: 244  KVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRMNLSVTSPYNADFDGDEMNLH 303

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS+ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD FIE D  MN+ 
Sbjct: 304  VPQSYETRAELSQIAAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIEYDQVMNMC 363

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLV 613
             W  ++DG +P P ILKP+PLW+GKQ+ +L IPK I L R        D  +L+  D+ +
Sbjct: 364  YWIPEWDGVIPPPCILKPKPLWSGKQMMSLCIPKGIFLQRL-------DGSLLSPKDSGM 416

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
             I  GE++ G + K T+G+S G LIH    E GP    +  G+ Q ++NYWLL N FSIG
Sbjct: 417  LIMNGEIMFGVVNKATVGSSAGGLIHTTMREKGPTICARMFGNIQKVINYWLLHNGFSIG 476

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGD IAD +TM+TI +TI +AK  V+ +IK AQ   LEPEPG T+ ESFE KV+++LN A
Sbjct: 477  IGDAIADPETMKTITETIKEAKEKVQLVIKDAQQNLLEPEPGMTVRESFEQKVSKILNEA 536

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RD AG SA+ SL  SNN+K MVTAGSKGS+INISQM+ACVGQQ VEGKRI FGF DR+LP
Sbjct: 537  RDSAGKSAETSLKNSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLP 596

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HFTKDDY  ES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRL+KA+
Sbjct: 597  HFTKDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKAL 656

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN 913
            EDIMV YDGT RNSLGD+IQFLYGEDG+D   +E QT+D++     +F+K +R ++  E 
Sbjct: 657  EDIMVHYDGTTRNSLGDIIQFLYGEDGLDGTSVEKQTVDTIPGSTEQFEKKYRVDLMNEK 716

Query: 914  WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLI 973
             +    L EY  ++    EL+ V D E ++L  DR  L T +  +GD++WPLPVN++R+I
Sbjct: 717  KSIRSDLIEYGSEILGDIELQKVLDEEYEQLLTDREFLRTVVFPNGDNNWPLPVNIRRII 776

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
             NAQ+ F VD  + SD+    +V +V +L  +  VV G+  +  EAQ+NAT  F  L+RS
Sbjct: 777  QNAQQVFHVDQYKASDLKISHLVNSVQQLCTKFIVVRGKGSIISEAQENATNLFQCLVRS 836

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
              A++RVL+E+RL + AF+WVIG IE +F +SLV
Sbjct: 837  RLATRRVLEEYRLNKNAFDWVIGTIEQQFARSLV 870


>gi|397135896|gb|AFO11443.1| RNA polymerase I, partial [Schwanniomyces etchellsii]
          Length = 872

 Score = 1019 bits (2635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/883 (57%), Positives = 645/883 (73%), Gaps = 22/883 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP- 253
            KN D+ + PE    ++ LT   +L V K IS EDC  LG N  YARP+WM++ VLP+PP 
Sbjct: 2    KNFDENEQPE----RRLLTPAEILSVFKHISAEDCYRLGFNEDYARPEWMLITVLPVPPP 57

Query: 254  ---------PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT +LA +++ N N++R E +G+P H+ISEF  LLQFH+ATY 
Sbjct: 58   PVRPSIAFNETARGEDDLTFKLADVLKANINVQRLEMDGSPQHVISEFEALLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPE VTPYNI RL E V  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 178  GVPLSIARTLTYPEIVTPYNIHRLTEFVRNGPNEHPG---AKYVIRDTGDRIDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ E+  VP  IVSPQSN+PVMGIVQDTL G RK+T RD+FI
Sbjct: 295  FDGDEMNLHVPQSHETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MN+L W  +++G +P P +++P+PLWTGKQ+ ++ IPK I+L R      D+   
Sbjct: 355  EYDQVMNMLYWIPNWNGIIPPPAVVRPKPLWTGKQILSMAIPKGIHLQRF-----DDGTN 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  D  + I  GE++ G + KKT+G + G LIH +  E GP    +     Q +VN+W
Sbjct: 410  LLSPKDNGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQKVVNFW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIAD +TM+ I  TI +AK+ V+ +I  AQ   L+PEPG T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADPETMKDITITIQEAKDKVQQIILDAQLNKLDPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ SL + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  NVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E Q +D++    + F+K 
Sbjct: 650  IQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQAVDTIPGSDASFEKR 709

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            +R ++     +    L E   +++   EL+ V D E  +L+ADR  L      SGD SWP
Sbjct: 710  YRIDLLNPELSIRDSLLESGKEIRGDVELQKVLDEEYDQLKADRKYLREVCFPSGDFSWP 769

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVNL+R+I NAQ+ F     R SD+   E+V  V +L  +L V+ G+ PL  EAQ+NAT
Sbjct: 770  LPVNLRRIIQNAQQIFHSGLNRASDLRLDEIVRGVQELCTKLLVLRGDTPLIKEAQENAT 829

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L F  LLRS  A++RV++E++L R +FEWV+GE E++F +S+V
Sbjct: 830  LLFQCLLRSRLAARRVIEEYKLNRASFEWVLGEAETQFQRSIV 872


>gi|397135942|gb|AFO11466.1| RNA polymerase I, partial [Trichomonascus petasosporus]
          Length = 873

 Score = 1019 bits (2635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/890 (57%), Positives = 641/890 (72%), Gaps = 41/890 (4%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP- 253
            KN ++   PE    K+ LT   +L VLK IS ED   LGLN  YARP+W+I+ VLP+PP 
Sbjct: 2    KNAEEGDQPE----KRVLTPTEILNVLKHISPEDIIKLGLNEDYARPEWLIITVLPVPPP 57

Query: 254  ---------PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT++LA I++ N N+ R E+ GAPAH+++EF  LLQ+H+ATY 
Sbjct: 58   PVRPSIAINETARGEDDLTYKLADILKANSNVARCEQEGAPAHVVNEFESLLQYHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP + +DQ+
Sbjct: 118  DNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPE +TPYNI+RL ELV  GP+  PG   AKYIIRD G+R+DLRY K++
Sbjct: 178  GVPKSIARTLTYPEIITPYNIQRLTELVRNGPNEHPG---AKYIIRDTGERIDLRYHKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHIQDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQSN+PVMGIVQDTL G RK++KRD F+
Sbjct: 295  FDGDEMNLHVPQSEETRAELSQLCMVPLQIVSPQSNKPVMGIVQDTLCGIRKMSKRDNFL 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT-----AAWHA 599
            E D  MNIL W   +DG VP PTIL+P+PLWTGKQ+ ++ IP  I L R      +AW +
Sbjct: 355  EFDQVMNILFWIPSWDGNVPTPTILRPKPLWTGKQIISMCIPNGIYLQRLDSEGGSAWIS 414

Query: 600  DNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQW 659
              D G+L        I KGE++ G + KKT+G ++G L+H I  E GP  A  F G  Q 
Sbjct: 415  PKDTGML--------ISKGEIMFGAVDKKTVGATSGGLVHTIMREKGPQVACNFFGEVQK 466

Query: 660  LVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMM 719
            +VNYWLL N+FSIGIGDTIADA TM  + D I+ AK  V+ LI + Q   L P+PG T+ 
Sbjct: 467  VVNYWLLHNSFSIGIGDTIADATTMSQVYDHIATAKAEVQKLILKVQSNDLSPDPGMTLR 526

Query: 720  ESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 779
            E+FE   ++  N ARD+AG SA+KSL E NN+K MV +GSKGSFINISQM+ACVGQQ VE
Sbjct: 527  ETFEAHASKAFNQARDDAGKSAEKSLKELNNVKQMVVSGSKGSFINISQMSACVGQQIVE 586

Query: 780  GKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 839
            GKRIPFGF DRTLPHFTKDD+  ESRGF+ENSYLRGLTPQEFFFHAM GREGLIDTAVKT
Sbjct: 587  GKRIPFGFQDRTLPHFTKDDFSGESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKT 646

Query: 840  SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKS 899
            +ETGYIQRRLVKA+ED+MV YDGT RNSLGD+IQFLYGEDG+D   +E Q +D++    +
Sbjct: 647  AETGYIQRRLVKALEDVMVHYDGTARNSLGDIIQFLYGEDGLDGTQVEKQNVDTMSGSMA 706

Query: 900  EFDKAFRFEMDEENWNPNYMLQ------EYIDDLKTIKELRDVFDAEVQKLEADRYQLAT 953
            +F++ +R ++ + +       Q      E + DL T +    + D E  +L  DR  L  
Sbjct: 707  QFERRYRIDLMDSHGVKALKSQLLESGAEIMGDLDTQR----LLDEEYDQLLEDRNFLRH 762

Query: 954  EIATSGD-SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGE 1012
            ++    D SSWPLPVNL+R+I NAQ TF +D  + SD+   E+V  +  L   L VV GE
Sbjct: 763  KVFPGNDESSWPLPVNLRRVIRNAQSTFNIDESKASDLTVPEIVRGIQNLMNDLPVVRGE 822

Query: 1013 DPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
              +  EAQ+NAT  F  L+RS  A+KR+++E+RL + AF+WV+GE+ S+F
Sbjct: 823  GDVLTEAQENATYLFKALVRSRLATKRIIEEYRLNKIAFDWVLGEVRSQF 872


>gi|397135882|gb|AFO11436.1| RNA polymerase I, partial [Spathaspora passalidarum]
          Length = 872

 Score = 1019 bits (2635), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/883 (58%), Positives = 647/883 (73%), Gaps = 22/883 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN D+ + PE    ++ L+   +L V K I+ EDC  LG N  YARP+WM++ VLP+PPP
Sbjct: 2    KNFDENEQPE----RRLLSPSEILNVFKHINSEDCYKLGFNEDYARPEWMLITVLPVPPP 57

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT +LA +I+ N N++R E +G+P H+ISEF  LLQFH+ATY 
Sbjct: 58   PVRPSIAFNDTARGEDDLTFKLADVIKANINVQRLETDGSPQHVISEFEALLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  L+YPE VTPYNI RL E V  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 178  GVPISIAKTLSYPEIVTPYNIHRLTEYVRNGPNEHPG---AKYVIRDTGDRIDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ ++  VP  I+SPQSN+PVMGIVQDTL G RK+T RDT+I
Sbjct: 295  FDGDEMNLHVPQSPETRAELSQICAVPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDTYI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MN+  W  ++DG +P P I+KP+PLWTGKQ+ ++ IPK I+L R      D  + 
Sbjct: 355  EFDQVMNMCYWIPNWDGVIPPPAIVKPKPLWTGKQLLSMAIPKGIHLQR-----FDGGRD 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+A DT + I  GE++ G + KKT+G + G LIH +  E GP    +     Q +VNYW
Sbjct: 410  LLSAKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQKVVNYW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIADA TM+ I  TI +AK  V+ +I  AQ   LEPEPG T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADASTMKDITTTIQEAKTKVQEIILDAQQNRLEPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ +L + NN+K MVT+GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  NVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E Q++D++      FD+ 
Sbjct: 650  IQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIPGSDESFDQR 709

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            +R ++ +   + +  L E   ++K   +L+ V D E  +L  DR  L      +GD SWP
Sbjct: 710  YRIDVLDPAKSISESLLESGKEIKGDVKLQRVLDEEYHQLLDDRRYLRDVCFPNGDFSWP 769

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVNL+R+I NAQ+ F     + SD+   E++  V +L  +L VV G+ PLS EAQ NAT
Sbjct: 770  LPVNLRRIIQNAQQIFHNGRYKASDLRLDEIILGVRQLCTKLLVVRGDSPLSKEAQANAT 829

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L F  LLRS  A++RV++E +L R +FEWV+GEIE++F +S+V
Sbjct: 830  LLFQCLLRSRLAARRVIEEFKLNRASFEWVVGEIETQFQKSIV 872


>gi|119643649|gb|ABL85581.1| RNA polymerase II largest subunit [Platismatia glauca]
          Length = 996

 Score = 1019 bits (2634), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/977 (54%), Positives = 687/977 (70%), Gaps = 43/977 (4%)

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEID--VPGQDGEEPLKKNKGGCGAQQPKL 178
            F  A++ R+PK R   +   CK K  CE    +D   P    ++P K + GGCG  QP++
Sbjct: 41   FADAIRRRDPKKRFDLVWRLCKPKMICETTMALDDDAPSDKTKQP-KLDHGGCGNIQPEV 99

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              EG+++   +KAQ+   +++ Q PE    K+ +T +  L + + IS ED + +GL+  Y
Sbjct: 100  RREGLRLTGTWKAQKGDEENEGQQPE----KKPITPQMALNIFRHISTEDIKRMGLSNDY 155

Query: 239  ARPDWMILQVLPIPPPPV------------RPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
            ARP+WMI+ VLP+PPPPV            R  DDLT++L  IIR N N+RR E  G+PA
Sbjct: 156  ARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPA 215

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            H++SEF QLLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KE R+RGNLMGKRVD
Sbjct: 216  HVVSEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEXRLRGNLMGKRVD 275

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP +++D++GVP SIA  LTYPETVTPYNI++L +LV+ GP+  PG   AK
Sbjct: 276  FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG---AK 332

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            Y+IRD G+R+DLR+ K++ +  L+ G+KVERH+ DGD++ FNRQP  HK S+MGHR+++M
Sbjct: 333  YVIRDTGERIDLRHHKRAGEISLQYGWKVERHVVDGDYIXFNRQPXXHKESMMGHRVRVM 392

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            PYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGI
Sbjct: 393  PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNGPLMGI 452

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDTL G  K+ +RD F+ K   MNIL+W  D+DG +PQP I+KP  +WTGKQ+ +L+IP
Sbjct: 453  VQDTLCGIYKMCRRDVFLTKKQVMNILLWVPDWDGVIPQPAIVKPLAMWTGKQILSLVIP 512

Query: 587  KQINLFRTAAWHAD--NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
              +NL R +       ND G+L +G        GEL+ G L KK++G S G +IH+I+ E
Sbjct: 513  TGLNLLRGSEEGLSPVNDDGLLISG--------GELMYGLLNKKSVGASGGGVIHIIFNE 564

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
             GP+AA  F    Q +VNYWLL N FSIGIGDTI D  T++ I + +++ K  V  + + 
Sbjct: 565  KGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIPDRHTIQQIENAVNEQKAEVLEITRS 624

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            A +  L+  PG  + E+FE+KV++ LN ARD+AG+  + SL + NN   M  +GSKGS I
Sbjct: 625  ATENQLDSLPGMNVRETFESKVSKALNKARDDAGTVTENSLKDFNNATQMARSGSKGSTI 684

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFH
Sbjct: 685  NISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFH 744

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D V
Sbjct: 745  AMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGV 804

Query: 885  WIESQTLDSLKMKKSEFDKAFRFE-MD---EENWNPNYM--LQEYIDDLKTIKELRDVFD 938
             IESQ +D L     +F++ FR + MD   E +  P ++    E I D++T K L    D
Sbjct: 805  HIESQRVDILACSTKQFERKFRVDLMDSKPETSIFPEFLEGANEMIGDVETQKHL----D 860

Query: 939  AEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
             E ++LE DR +L        ++ + LP+N+ R++  A+ TFK+     S++HP EV+  
Sbjct: 861  NEYRQLEKDRAELRKNRQDDSENLY-LPLNVIRILDTAKTTFKIKNGARSNLHPAEVIPQ 919

Query: 999  VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            V  L +RL VV G D LS EAQ NATL F I LRS  A KR++ E+ L + AF+ V+GEI
Sbjct: 920  VQNLLDRLVVVRGTDKLSEEAQHNATLPFKIQLRSRLAFKRLVMENSLNKLAFQHVLGEI 979

Query: 1059 ESRFLQSLVAPGEMIGC 1075
            ESRF ++ V PGEM+G 
Sbjct: 980  ESRFCRAAVNPGEMVGV 996


>gi|397135924|gb|AFO11457.1| RNA polymerase I, partial [Peterozyma toletana]
          Length = 870

 Score = 1017 bits (2630), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/881 (57%), Positives = 640/881 (72%), Gaps = 23/881 (2%)

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            DD EQ PE    ++ LT   +L V K IS EDC  LG +  YARP+WMI+ VLP+PPP V
Sbjct: 3    DDNEQ-PE----RRLLTPGEILNVFKHISPEDCYKLGFSEDYARPEWMIITVLPVPPPAV 57

Query: 257  RPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
            RPS          DDLT +LA I+++N ++++ E +G+P H+ISE+  LLQFH+ATY DN
Sbjct: 58   RPSVQVTDTTRGEDDLTFKLADIVKYNMSVQKLEMDGSPQHVISEYESLLQFHVATYMDN 117

Query: 307  ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
            ++ GQP+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP + +DQ+GV
Sbjct: 118  DIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVGV 177

Query: 367  PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
            P SIA  LTYPE VTPYNI +L ELV  GP+  PG    +Y+ RD G+R+DL+Y K++ D
Sbjct: 178  PRSIARTLTYPEMVTPYNIHKLTELVRNGPNEHPG---LRYVFRDTGERIDLKYHKRAGD 234

Query: 427  HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 486
              L+ G+ VERHL D D VLFNRQPSLHKMS+M HR+K+MPYS+FRLNLSVTSPYNADFD
Sbjct: 235  IALQYGWIVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSSFRLNLSVTSPYNADFD 294

Query: 487  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
            GDEMN+HVPQS ETRAE+ ++  VP  I+SPQSN+PVMGIVQDTL G RK+T RD FIE 
Sbjct: 295  GDEMNLHVPQSEETRAELSQICAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLRDVFIEY 354

Query: 547  DVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGIL 606
            D  MNIL W   +DG +P+PTI+KP+PLWTGKQ+ +++IPK INL R      D     L
Sbjct: 355  DEVMNILYWIPSWDGVIPEPTIVKPKPLWTGKQMLSMVIPKGINLER-----KDEKFTYL 409

Query: 607  TAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 666
            +  DT + I  GE++ G + KKT+G + G LIH ++ E GP       G+ Q +VNYWLL
Sbjct: 410  SNDDTGMLIVDGEIMLGVVNKKTVGATGGGLIHAVFREKGPQVCADLFGNMQKVVNYWLL 469

Query: 667  QNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKV 726
               FSIGIGDTIADA T+++I  TI  AK  V  +I +AQ   L PEPG T+ ESFE  V
Sbjct: 470  HYGFSIGIGDTIADAPTVKSITHTIVTAKEKVHEIILKAQRNELPPEPGMTLRESFEQSV 529

Query: 727  NQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 786
            +QVLN ARD+ G +   +L + NN+K MV+AGSKGS INISQM+ACVGQQ VEGKRIPFG
Sbjct: 530  SQVLNQARDDVGKATADALQDWNNVKQMVSAGSKGSNINISQMSACVGQQIVEGKRIPFG 589

Query: 787  FVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 846
            F DR+LPHFTKDDY PESRGFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQ
Sbjct: 590  FADRSLPHFTKDDYSPESRGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQ 649

Query: 847  RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFR 906
            RRLVKA+EDIMV YDGT RNSLG+V+QF+YGEDG+D+  +E Q++D++      F   +R
Sbjct: 650  RRLVKALEDIMVHYDGTARNSLGNVLQFVYGEDGLDATQVEKQSIDTIPGTDFAFANRYR 709

Query: 907  FEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLP 966
             ++ EE  +    L E   ++     L+ V D E  +L +DR  L      +GD  WPLP
Sbjct: 710  IDVMEEEHSLRPELIENGSEILGDIALQKVLDREYNQLLSDRRYLRDVCFQNGDFQWPLP 769

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            VN++R+I NAQK F +D  R SD+   E+V+ V+ L  ++ V  GE  L  ++Q +ATL 
Sbjct: 770  VNIRRVIQNAQKIFYIDSSRVSDLTLPEIVDGVETLCSKIYVTKGEGKLYEQSQADATLL 829

Query: 1027 FNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            F  L+RS  A++RV++E +L++ AFEWV+ EIE++F +S+V
Sbjct: 830  FQCLVRSRLAARRVIEEFKLSKSAFEWVLSEIEAQFQKSIV 870


>gi|397135944|gb|AFO11467.1| RNA polymerase I, partial [Sugiyamaella smithiae]
          Length = 868

 Score = 1017 bits (2630), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/865 (58%), Positives = 643/865 (74%), Gaps = 20/865 (2%)

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP----------PPVRP 258
            K+ LT   VL V K IS ED   LGLN  YARP+WMI+ VLP+PP             R 
Sbjct: 12   KRLLTPSEVLNVFKHISQEDIIKLGLNEDYARPEWMIITVLPVPPPPVRPSIAINETARG 71

Query: 259  SDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRS 318
             DDLT++LA I++ N N++R ++ GAPAH+I+EF  LLQ+H+ATY DN++ GQP+A Q+S
Sbjct: 72   EDDLTYKLADILKANGNVQRCDQEGAPAHVINEFESLLQYHVATYMDNDIAGQPQALQKS 131

Query: 319  GRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPE 378
            GRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+GVP SIA  LTYPE
Sbjct: 132  GRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPRSIARTLTYPE 191

Query: 379  TVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERH 438
             VTPYNI++L ELV  GP+  PG   AKY+IRD G+R+DLRY K++ D  L+ G+KVERH
Sbjct: 192  IVTPYNIQKLTELVRNGPNEHPG---AKYVIRDTGERIDLRYHKRAGDIALQYGWKVERH 248

Query: 439  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
            L D D VLFNRQPSLHKMS+M HR+K+MPYS+FR+NLSVTSPYNADFDGDEMN+HVPQS 
Sbjct: 249  LMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSSFRMNLSVTSPYNADFDGDEMNLHVPQSE 308

Query: 499  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
            ETRAE+ +L  VP  IVSPQSN+PVMGIVQDTL G RK++KRD+FI+ +  MNIL W  +
Sbjct: 309  ETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMSKRDSFIDYEQVMNILFWVPN 368

Query: 559  FDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKG 618
            +DG++P P I KP+P+WTGKQ+ +L IP  I L R      D+   +++  D  + I +G
Sbjct: 369  WDGRIPPPAIWKPKPMWTGKQMVSLCIPDGIFLQRF-----DDGNPLISPKDNGMLISRG 423

Query: 619  ELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            E++ G + KKT+G + G LIH I  E GP  A  F G+ Q +VNYWLL N FSIGIGDTI
Sbjct: 424  EIIYGVVDKKTVGATGGGLIHTIMREKGPKVAAGFFGNIQKVVNYWLLHNGFSIGIGDTI 483

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
            AD  TM  I +TI++AK  V+++I  AQ+ +L PEPG T+ ESFE+ V++VLN ARD AG
Sbjct: 484  ADGSTMRDIANTIAEAKQKVQDIIADAQNNTLSPEPGMTLRESFEHNVSRVLNQARDNAG 543

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
             SA+ SL + NN+K MV +GSKGSFINISQM ACVGQQ VEGKRIPFGF DR+LPHFTKD
Sbjct: 544  RSAELSLKDLNNVKQMVVSGSKGSFINISQMMACVGQQIVEGKRIPFGFADRSLPHFTKD 603

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
            DY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+EDIMV
Sbjct: 604  DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMV 663

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNY 918
            +YDGT RNSLGDVIQF+YGEDG+D   +E QT+D++      F++ +R ++ + ++  + 
Sbjct: 664  QYDGTTRNSLGDVIQFIYGEDGLDGTQVEKQTIDTIPGSDEAFERRYRIDVMDPSFARSI 723

Query: 919  M--LQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNA 976
               L E  +++    E++ V D E  +L  DR  L   + T+GD +WPLPVNL R+I NA
Sbjct: 724  KPSLLESGNEILGDLEIQRVLDIEFNQLLDDRNHLRQFVFTNGDHNWPLPVNLXRVIQNA 783

Query: 977  QKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFA 1036
            Q+ F +D  RPSD+   E+V  V +L  +L V+ G+  L  EAQ NA   F+ L+RS  A
Sbjct: 784  QQIFNIDRSRPSDLTIPEIVHGVRELIGKLIVIRGKGSLVEEAQNNAXYLFSTLVRSRLA 843

Query: 1037 SKRVLKEHRLTREAFEWVIGEIESR 1061
            SKR+ +E RL R AFEWVIGE++++
Sbjct: 844  SKRIXEEFRLNRTAFEWVIGEVKAQ 868


>gi|397135930|gb|AFO11460.1| RNA polymerase I, partial [Zygoascus hellenicus]
          Length = 871

 Score = 1016 bits (2627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/873 (57%), Positives = 645/873 (73%), Gaps = 29/873 (3%)

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP----------PPVRP 258
            K+ LT   +L V K I+ ED Q LGLN  YARP+WMI+ VLP+PP             R 
Sbjct: 12   KRVLTPLEILNVFKHITAEDAQKLGLNEDYARPEWMIITVLPVPPPPVRPSIAINETARG 71

Query: 259  SDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRS 318
             DDLT++LA I++ N N++R E+ GAPAH+I+EF  LLQ+H+ATY DN++ GQP+A Q+S
Sbjct: 72   EDDLTYKLADILKANANVQRCEQEGAPAHVINEFESLLQYHVATYMDNDIAGQPQALQKS 131

Query: 319  GRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPE 378
            GRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++DQ+GVP SIA  L+YPE
Sbjct: 132  GRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLDLDQVGVPKSIARTLSYPE 191

Query: 379  TVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERH 438
             VTPYNI++L E V  GP+  PG   AKY+IRD G+R+DLRY K++ D  L+ G+KVERH
Sbjct: 192  IVTPYNIQKLTEYVRNGPNEHPG---AKYVIRDTGERIDLRYHKRAGDIALQYGWKVERH 248

Query: 439  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
            L D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS 
Sbjct: 249  LMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSQ 308

Query: 499  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
            ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK++ RDTF++ D  MNIL W  +
Sbjct: 309  ETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKLSLRDTFLDFDQVMNILFWVPN 368

Query: 559  FDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGDTLVRI 615
            +DG VP P +LKPRP+WTGKQ+ +L IP  I + R    +  N   D G+L        +
Sbjct: 369  WDGVVPTPAVLKPRPMWTGKQMVSLAIPSGIFMQRFDEGNPANSPKDNGML--------V 420

Query: 616  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 675
             KGE++ G + KKT+G + G LIH I  E GP  A  F G+ Q +VN+WLL + FS+GIG
Sbjct: 421  YKGEIMYGVVDKKTVGATAGGLIHTIMREKGPYVAAGFFGNIQKIVNFWLLHHGFSVGIG 480

Query: 676  DTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARD 735
            DTIAD+ TM  I  TIS+AK  V   I +AQ+  L PEPG T+ ESFE+ V++VLN ARD
Sbjct: 481  DTIADSATMTGIAATISEAKQKVSEYIMEAQENKLAPEPGMTLRESFEHNVSRVLNQARD 540

Query: 736  EAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 795
             AG SA+ SL +SNN+K MVT+GSKGSFINISQM+ACVGQQ VEGKRIPFGF DR+LPHF
Sbjct: 541  TAGRSAETSLKDSNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPHF 600

Query: 796  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 855
            TKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED
Sbjct: 601  TKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALED 660

Query: 856  IMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM---DEE 912
            +MV+YDGT RNSLG++IQF+YGEDG+D+  +E QT+D++      F++ +R ++      
Sbjct: 661  VMVQYDGTTRNSLGNIIQFVYGEDGLDATQVEKQTVDTIPGSDEAFERRYRIDLLGDSRY 720

Query: 913  NWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRL 972
               PN +  E  +++    +L+ V D E ++L ADR+ L TE+   GD +WPLPVNL+R+
Sbjct: 721  QLKPNLLESE--NEIIGDSDLQKVLDDEYEQLLADRHFLRTEVFPDGDHNWPLPVNLRRV 778

Query: 973  IWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 1032
            I N+Q+ F VD  + SD+   E+V+ V  L +++  V GE  +  +AQ NA+     L+R
Sbjct: 779  IQNSQQIFNVDXNKASDLTIGEIVKGVKDLCDKIIAVRGEGDILQDAQNNASWLMKCLIR 838

Query: 1033 STFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
            S  A+KR+++E+RL R +FEWV+ E+ES + +S
Sbjct: 839  SRLATKRIIEEYRLNRASFEWVLYEVESLYARS 871


>gi|397135888|gb|AFO11439.1| RNA polymerase I, partial [Priceomyces haplophilus]
          Length = 867

 Score = 1016 bits (2627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/880 (58%), Positives = 646/880 (73%), Gaps = 25/880 (2%)

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
            K  DD EQ PE    ++ LT   +L V K IS EDC  LG N  YARP+WM++ VLP+PP
Sbjct: 2    KNFDDGEQ-PE----RRLLTPSEILSVFKHISPEDCHKLGFNEDYARPEWMLITVLPVPP 56

Query: 254  P----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
            P            R  DDLT +LA +I+ N N++R E +G+P H+I+EF  LLQFH+ATY
Sbjct: 57   PPVRPSISFNDTARGEDDLTXKLADVIKANXNVQRLEMDGSPQHVINEFEALLQFHVATY 116

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP+A Q++GRPIKSI +RLK KEGRIRGNLMGKRVDFSARTV + DP +++DQ
Sbjct: 117  MDNDIAGQPQAXQKTGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVXSGDPNLDLDQ 176

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPE VTPYNI RL ELV  GP+  PG   AKY+IRD+G R+DLR  K+
Sbjct: 177  VGVPISIARTLTYPEIVTPYNIHRLTELVRNGPNEHPG---AKYVIRDNGDRIDLRXNKR 233

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            + D  L  G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNA
Sbjct: 234  AGDIALXYGWKVERHLMDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNA 293

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETRAE+ E+  VP  IVSPQSN+PVMGIVQDTL G RK+T RD F
Sbjct: 294  DFDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIF 353

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            I+ +  MN+L W  ++DG++P P I+KP+PLWTGKQ+ ++ IPK I+L R      D+  
Sbjct: 354  IDYEQVMNMLYWIPNWDGRIPSPAIIKPKPLWTGKQILSMAIPKGIHLQR-----FDDGM 408

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
             +L+A D  + I  GE++ G + KKT+G + G LIH +  E GP A  +     Q +VNY
Sbjct: 409  NLLSAKDNGMLIIDGEIIFGVVDKKTVGATGGGLIHTVMREKGPKACAQLFNSIQKVVNY 468

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            WLL N FSIGIGDTIADA TM+ + +TI +AK  V+ +I  AQ   L+PEPG T+ ESFE
Sbjct: 469  WLLHNGFSIGIGDTIADASTMKDVTNTIQEAKKKVQEIILDAQQNRLDPEPGMTLRESFE 528

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
            + V++VLN ARD AG SA+ +L + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRI
Sbjct: 529  HNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRI 588

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
            PFGF DR+LPHFTKD+Y PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETG
Sbjct: 589  PFGFSDRSLPHFTKDNYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 648

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRR++KA+EDIMV YDGT RNSLGDVIQFLYGEDG+D   +E Q++D++      F +
Sbjct: 649  YIQRRIIKALEDIMVHYDGTTRNSLGDVIQFLYGEDGIDGTQVEKQSVDTIPGSDVNFGR 708

Query: 904  AFRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSS 962
             +R + ++ EN     +L E   ++K   +L+ + D+E  +L+ DR  L   + T+GD +
Sbjct: 709  RYRVDVLNSENSIAESLL-ESGKEIKGNVKLQKILDSEYDQLQEDRKYLREVVFTNGDYN 767

Query: 963  WPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKN 1022
            WPLPVNL+R+I NAQ+ F     + SD+   E+V  V  L  +L V+ G+ PL  EAQ N
Sbjct: 768  WPLPVNLRRIIQNAQEIFHSGRNKASDLRLEEIVSGVKDLCTKLLVIRGDSPLMKEAQSN 827

Query: 1023 ATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
            ATL F  L+RS  AS+RV++E +L+R +FEWV+GEIE++F
Sbjct: 828  ATLLFQCLVRSKLASRRVIEEFKLSRTSFEWVMGEIETQF 867


>gi|119514066|gb|ABL75806.1| RNA polymerase II largest subunit [Tephromela atra]
          Length = 989

 Score = 1016 bits (2626), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/1008 (52%), Positives = 695/1008 (68%), Gaps = 39/1008 (3%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            FM  +  ++ +VC NC KIL DE +  F  AL+ R+PK R   +   CK K  CE    +
Sbjct: 1    FMTKIKKLLETVCHNCGKILVDESNPAFADALRYRDPKRRFDAVWRLCKPKMICETTMAL 60

Query: 154  D--VPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT 211
            D   P +  +EP K + GGCG  QP++  EG+++   +KAQ+   +++ Q PE    K+ 
Sbjct: 61   DDDAPPEKLKEP-KHDHGGCGNIQPEIRREGLRLNGTWKAQKGDEENEGQQPE----KKP 115

Query: 212  LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP------------VRPS 259
            +T +  L + + IS +D + +GL+  YARP+WMI+ VLP+PPPP            +R  
Sbjct: 116  ITPQMALSIFRHISTDDIKRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGMRGE 175

Query: 260  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
            DDLT++L  IIR N N+RR E  G+PAH+++EF QLLQFH+ATY DN++ GQP+A Q+SG
Sbjct: 176  DDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKSG 235

Query: 320  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
            RP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPET
Sbjct: 236  RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 295

Query: 380  VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHL 439
            VTPYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KVERH+
Sbjct: 296  VTPYNIQKLHQLVKNGPNEHPG---AKYVIRDSGERIDLRHHKRAGEISLQYGWKVERHI 352

Query: 440  NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 499
             DGD                  R+++MPYSTFRLNLSVT PYNADFDGDEMN+HVPQS E
Sbjct: 353  VDGDXXXXXXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTGPYNADFDGDEMNLHVPQSEE 412

Query: 500  TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 559
            TRAEV +L MVP  IVSPQ N P+MGIVQDTL G  K+ +RD F+ K+  MNIL+W  D+
Sbjct: 413  TRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDW 472

Query: 560  DGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGE 619
            DG +PQP I+KPR +WTGKQ+ +L+IP  +NL R +      D+G     D  + +  GE
Sbjct: 473  DGVIPQPAIVKPRLMWTGKQILSLVIPPGLNLMRGS------DEGFCPLSDDELLVSGGE 526

Query: 620  LLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 679
            L+ G L KK++G + G +IH+I+ E GP+AA  F    Q +VNYWLL N FSIGIGDTI 
Sbjct: 527  LMYGLLNKKSVGAAPGGVIHIIFNEKGPEAAMNFFNGAQTVVNYWLLHNGFSIGIGDTIP 586

Query: 680  DAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGS 739
            D KT++ I D ++K K+ V  + + A +  L   PG  + ++FE+KV++ L+ ARD+AG+
Sbjct: 587  DRKTIQRIEDAVNKQKDEVGEITRSATENELGSLPGMNVRQTFESKVSKALDKARDDAGT 646

Query: 740  SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDD 799
              + SL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDD
Sbjct: 647  VTENSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDD 706

Query: 800  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
            Y PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M K
Sbjct: 707  YSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAK 766

Query: 860  YDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD---EENWN 915
            YDGTVRNSLGD++QF+YGEDG+D V IE+Q +D +     +F+K FR + MD   E + +
Sbjct: 767  YDGTVRNSLGDIVQFVYGEDGLDGVHIEAQRVDIITCSDKQFEKKFRVDLMDAKPETSIS 826

Query: 916  PNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLI 973
            P+++ Q  E I DL T + L D    E ++L A R  L        +    LP+N+ R++
Sbjct: 827  PDFLEQVTEMIGDLGTQEHLED----EWKQLLAARDFLRKN-KQDDNEQLQLPINVIRIL 881

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
              A+ TFK+     S++HP EVV  V+ L  RL VV G+D LS E Q NATL F   LRS
Sbjct: 882  DTAKTTFKIKNGARSNLHPAEVVPQVNGLLNRLVVVRGDDILSKEGQHNATLLFKAQLRS 941

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
              A KR++ E+ L + AF+ V+GEIESRF ++ V PGEM+G +AAQSI
Sbjct: 942  RLAFKRLVVENSLNKLAFQHVLGEIESRFCRAAVNPGEMVGVLAAQSI 989


>gi|119514039|gb|ABL75792.1| RNA polymerase II largest subunit [Loxospora ochrophaea]
          Length = 975

 Score = 1015 bits (2625), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/996 (52%), Positives = 680/996 (68%), Gaps = 41/996 (4%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCE---GG 150
            FM  +  I+ +VC  C KIL DE   +F++A+  R+PK R + +   C+ K  CE   GG
Sbjct: 1    FMTKIKKILETVCHGCGKILVDESSAEFREAMGYRSPKKRFELVWRLCQKKNVCEKNAGG 60

Query: 151  DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
            ++ D   +  +EP K + GGCG  QP++  EG+++I  +KAQ+   +++ Q PE    K+
Sbjct: 61   EDNDF--EKSKEP-KHDHGGCGNIQPQIRREGLRLIGTWKAQKGDEENEGQQPE----KK 113

Query: 211  TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPPPPVR 257
             +T +  L V ++I  ED + +GL+  YARP+WMI+ V             +      +R
Sbjct: 114  PITPQMALTVFRQIVPEDIKKMGLSNDYARPEWMIITVLPVPPPPVRPSISIDGSAQGMR 173

Query: 258  PSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQR 317
              DDLT++L  IIR N N+RR E +G+PAHI+ EF +LLQFH+ATY DN++ GQP+A Q+
Sbjct: 174  GEDDLTYKLGDIIRANGNVRRCEADGSPAHIVHEFGELLQFHVATYMDNDIAGQPQALQK 233

Query: 318  SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYP 377
            SGRP+KS  +RLK K+GR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYP
Sbjct: 234  SGRPVKSSRARLKGKDGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYP 293

Query: 378  ETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVER 437
            ETVTPYNI +L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KVER
Sbjct: 294  ETVTPYNIHKLHQLVKNGPNEHPG---AKYVIRDSGERIDLRHHKRAGEISLQYGWKVER 350

Query: 438  HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
            H+  GD                  R+++MPY TFRLNLSVT PYNADFDGDEMN+HVPQS
Sbjct: 351  HIVGGDXXXXXXXXXXXXXXXXXXRVRVMPYXTFRLNLSVTGPYNADFDGDEMNLHVPQS 410

Query: 498  FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 557
             ETRAEV +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ KD  MN L+W  
Sbjct: 411  EETRAEVSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIFKICRRDVFLTKDQVMNALLWVP 470

Query: 558  DFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEK 617
            D+DG VPQP ILKP+P WTGKQ+ +LIIP+ +N+ R +       +G+ +  D  + I  
Sbjct: 471  DWDGFVPQPAILKPQPKWTGKQLISLIIPEGLNIVRPST------EGLASLHDDGLFIHG 524

Query: 618  GELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDT 677
            G+L+ G L KKT+G S G ++H+I+ E+GP+AA KF    Q +VNYWLL   FSIGIGDT
Sbjct: 525  GDLMYGLLNKKTVGASAGGVVHIIFNELGPEAAMKFFNGAQTVVNYWLLHTGFSIGIGDT 584

Query: 678  IADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEA 737
            I D  T++ I + ++  K  V +L + A +  LEP PG  + E+FE+KV++ LNTARD+A
Sbjct: 585  IPDRDTIQQIENAVNTRKEEVADLTRSATENELEPLPGMNVRETFESKVSKALNTARDDA 644

Query: 738  GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTK 797
            G+  +KSL + NN   M  +GSKGS INISQMTA VGQQ+ EGKRIPFGF  RTLPHFTK
Sbjct: 645  GTVTEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQQSAEGKRIPFGFKYRTLPHFTK 704

Query: 798  DDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIM 857
            DDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKAMED+M
Sbjct: 705  DDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVM 764

Query: 858  VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPN 917
             KYDGTVRNSLGD++QF+YGEDG+D   IESQ LD +      F+K FR ++      P 
Sbjct: 765  AKYDGTVRNSLGDIVQFVYGEDGLDGAHIESQRLDIIVCSNEAFEKKFRVDL----MVPK 820

Query: 918  YML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLI 973
            + +  EY+D    I    +L+DVFD E + L+A R  L T      +    LP+N+ R++
Sbjct: 821  FQIPPEYLDQSAEINGDVKLQDVFDEEWEGLKAARAFLRTN-KYDDNEQLQLPINVVRIL 879

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
              A+ TFK+     SD+HP++V+  V  L ERL VV G+DPLS E Q NATL F   +RS
Sbjct: 880  DTAKTTFKIKDGMRSDLHPLDVIPQVRGLLERLVVVRGDDPLSKEGQHNATLLFKAHVRS 939

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1069
              A KRV+ EH L + AF+ V+GEIESRF ++ V P
Sbjct: 940  RLAFKRVVMEHSLNKLAFQHVLGEIESRFCRAAVNP 975


>gi|397135848|gb|AFO11419.1| RNA polymerase I, partial [Eremothecium cymbalariae]
          Length = 871

 Score = 1014 bits (2623), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/891 (57%), Positives = 655/891 (73%), Gaps = 39/891 (4%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN +    PE    K+ L+AE +L V K I+ ED   LG N  +ARP+WMIL VLP+PPP
Sbjct: 2    KNSEDSDQPE----KRILSAEEILNVFKHITPEDSLRLGFNEDFARPEWMILTVLPVPPP 57

Query: 255  PV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
            PV          R  DDLT++L  I++ N N++R E NG+P H+I E   LLQFH+ATY 
Sbjct: 58   PVRPSISFNESQRGEDDLTYKLGDILKANINVQRLEINGSPQHVIQESESLLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q+SGRPIKSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD+G R+DLRY K++
Sbjct: 178  GVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDNGDRIDLRYSKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIQLQYGWKVERHIIDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ +L  VP+ IVSPQSN+P MGIVQDTL G RK+T RDTFI
Sbjct: 295  FDGDEMNLHVPQSEETRAELSQLCAVPQQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  +N+L W  D+DG +P+PTILKP+PLW+GKQ+ ++ IP  I+L R      D    
Sbjct: 355  ELDQVLNMLYWIPDWDGVIPKPTILKPKPLWSGKQLLSMAIPNGIHLQR-----FDEGTT 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
             L+  D  + I  G+++ G + KKT+G+S+G LIHV+  E GP    K  G+ Q +VNYW
Sbjct: 410  YLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQVCAKLFGNIQKVVNYW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIAD KTM  I + I+ AK  V+ + K+AQ   L  + G T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADEKTMREITEAIALAKKRVQEVTKEAQANLLTAKHGMTLRESFED 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V + LN ARD+AG SA+ +L + NN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI 
Sbjct: 530  NVVRFLNEARDKAGRSAELNLRDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIA 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGY
Sbjct: 590  FGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLG++IQF+YGEDGMD+  IE Q++D++      F+K 
Sbjct: 650  IQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMDASHIEKQSIDTIPGSDLAFEKR 709

Query: 905  FRFEMDEENWNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIA 956
            +R ++     NP Y L         E + DLK    L+++ D E ++L  DR QL   + 
Sbjct: 710  YRIDL----LNPEYGLDPSLLESATEIMGDLK----LQNMLDEEYKQLVQDR-QLLRSVF 760

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
              G+ +WPLPVN++R+I NAQ+TF++D  +P+D+   +VV  V KLQ+ L V+ G   + 
Sbjct: 761  LDGEHNWPLPVNIRRIIQNAQQTFRIDTTKPTDLTIKDVVLGVRKLQDNLLVLRGSSNIL 820

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
             EAQ+NA   F  L+RS  A++RVL E+RLT++ F+WV+  IE++FL+S+V
Sbjct: 821  KEAQENAVTLFCSLVRSRLATRRVLTEYRLTKQTFQWVLNNIEAQFLRSIV 871


>gi|123979336|gb|ABM81493.1| RNA polymerase II largest subunit [Buellia dialyta]
          Length = 994

 Score = 1014 bits (2622), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/1008 (52%), Positives = 698/1008 (69%), Gaps = 40/1008 (3%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+  +  ++  VCF+CSK+L DE +  FK AL+ R+PK R  +I   CK K  CE     
Sbjct: 1    FISKIKKLLEMVCFSCSKLLVDESNPAFKDALRNRDPKKRFDQIWRICKPKMVCERLYPQ 60

Query: 154  DVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLT 213
            D   +D ++    + GGCG  QP++  +G+K++  +K Q+  +++  Q  +    K+ +T
Sbjct: 61   DDDNKDLQKDTAHDHGGCGNPQPEVRKDGLKLMGTWKPQKGDDENDAQQGD----KRPIT 116

Query: 214  AERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS------------DD 261
             +  L + + IS ED + +GL+  YARP+WMI+ VLP+PPPPVRPS            DD
Sbjct: 117  PQMALKIFRDISPEDVKNIGLSNDYARPEWMIITVLPVPPPPVRPSIKTDSGDGPAGEDD 176

Query: 262  LTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 321
            LT++L  IIR + N+RR E+ G P HI+ EF  LLQFH+ATY  N+  GQP+A Q+SGRP
Sbjct: 177  LTYKLGDIIRASGNVRRGEQEGTPQHIVEEFETLLQFHVATYMSNDTAGQPQALQKSGRP 236

Query: 322  IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 381
            +K+I SRLK KEGR+RGNLMGKRVDFSARTVIT DP + +D++GVP SIA  +TYPETVT
Sbjct: 237  VKAIRSRLKGKEGRVRGNLMGKRVDFSARTVITGDPNLCLDEVGVPRSIARTMTYPETVT 296

Query: 382  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 441
            PYNI +L +LV+ GP+  PG   A+Y+IRD G+R+DLRY K++ +  L+ G+KVERH+ D
Sbjct: 297  PYNIHKLHQLVKNGPNEHPG---ARYVIRDSGERIDLRYHKRAGELSLQYGWKVERHIVD 353

Query: 442  GDFVLFNRQPSLHKMSIMGH----------RIKIMPYSTFRLNLSVTSPYNADFDGDEMN 491
            GD+++FNRQPSLHK S+MG           R+++MPYSTFRLNLSVTSPYNADFDGDEMN
Sbjct: 354  GDYIIFNRQPSLHKESMMGQGXTRNLXWVXRVRVMPYSTFRLNLSVTSPYNADFDGDEMN 413

Query: 492  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 551
            +HVPQS ETRAEV +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ +   MN
Sbjct: 414  LHVPQSEETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLNQYQVMN 473

Query: 552  ILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDT 611
            IL+W  D+DG +PQP ILKP P+WTGKQ+ +LIIP  +NL R      + +     + D 
Sbjct: 474  ILLWVPDWDGIIPQPAILKPTPMWTGKQIVSLIIPAGLNLVRPG----EKENPFSPSDDG 529

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
             + I  GEL+ G L KK +G S+G +IH+++ E GP+AA  F    Q +VNYWLL N FS
Sbjct: 530  GLYISNGELMYGLLAKKIVGASSGGIIHIVFNEKGPEAAMNFFNGAQTVVNYWLLHNGFS 589

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDTI D  T++ I D +++ K +V  + K+A +  L+  PG  + E+FE+KV++ LN
Sbjct: 590  IGIGDTIPDRDTIKRIEDAVNQQKADVTEITKEATESVLDTLPGMNVRETFESKVSKALN 649

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARD+AG++ ++SL + NN   M  +GSKGS INIS+MTA VGQQ+VEGKRIPFGF  RT
Sbjct: 650  KARDDAGTATEQSLKDINNAIQMARSGSKGSTINISRMTAVVGQQSVEGKRIPFGFKYRT 709

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVK
Sbjct: 710  LPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 769

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            A+ED+M KYDGTVRNSLGD++QF+YGEDG+D   IE Q LD +     +F++ FR ++ E
Sbjct: 770  ALEDVMAKYDGTVRNSLGDIVQFIYGEDGLDGTAIEQQRLDIILCSNRDFERNFRVDLME 829

Query: 912  ENWNPNYMLQ-EYIDDLKTIK---ELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPV 967
               +P+  +  E +D    I    E+++  D E ++L+A R  L             LP+
Sbjct: 830  N--DPDTSISAEILDQATEIAGNVEVQEHLDQEYEQLKAARTFLRKN-KQDDIEQLQLPL 886

Query: 968  NLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFF 1027
            N+ R+I  A+ TF +     S++HP EV+  V+ L +RL VV G DPLS+E+Q NATL F
Sbjct: 887  NVARIIDTARTTFHIKSGGRSNLHPAEVIPQVNDLLDRLIVVRGSDPLSLESQHNATLLF 946

Query: 1028 NILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGC 1075
               LRS  A KR++ E  L + AF+ V+GEIESRF +++V PGEM+G 
Sbjct: 947  KAQLRSRLAFKRLVIESSLNKLAFQHVLGEIESRFSRAIVNPGEMVGV 994


>gi|397135878|gb|AFO11434.1| RNA polymerase I, partial [Wickerhamia fluorescens]
          Length = 872

 Score = 1014 bits (2621), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/883 (57%), Positives = 647/883 (73%), Gaps = 22/883 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN D+ + PE    ++ LT   +L VLK I+ EDC  LG N  YARP+WM++ VLP+PPP
Sbjct: 2    KNFDENEQPE----RRLLTPSEILNVLKHINSEDCVRLGFNEDYARPEWMLITVLPVPPP 57

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT +LA +++ N N++R E +G+P H+ISEF  LLQFH+ATY 
Sbjct: 58   PVRPSIAFNDTARGEDDLTFKLADVLKANINVQRLEMDGSPQHVISEFEALLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  L+YPE VTPYNI RL E V  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 178  GVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEHPG---AKYVIRDTGDRIDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETR+E+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD FI
Sbjct: 295  FDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MN+L W  D+DG +P P ++KP+P+WTGKQ+ ++ IPK I+L R      D  K 
Sbjct: 355  EYDQVMNMLYWIPDWDGVIPPPAVIKPKPMWTGKQLLSMAIPKGIHLQR-----FDGGKD 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  DT + I  GE++ G + KKT+G + G LIH +  E GP    +     Q +VNYW
Sbjct: 410  MLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPYVCAQLFSRIQKVVNYW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIADA TM  +  TI +AK+ V+ +I +AQ  +LEPEPG T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADASTMRDVTTTIQEAKDKVQEIILEAQQNTLEPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ +L + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  NVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLGDVIQF+YGEDG+D   +E Q++D++      F++ 
Sbjct: 650  IQRRLVKALEDIMVHYDGTTRNSLGDVIQFVYGEDGIDGTQVEKQSVDTIPGSDVSFERR 709

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            +R ++ + + + +  L E   ++K   +L+ V D E  +L  DR  L      +GD SWP
Sbjct: 710  YRIDVLDPSKSISEALLESGKEIKGDVKLQKVLDEEYNQLLDDRRYLRDVCFPNGDFSWP 769

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVNL+R+I N+Q+ F     + SD+   E++  V  L  +L VV G+  L  EAQ+NAT
Sbjct: 770  LPVNLRRIIQNSQQIFHSGRNKASDLRLDEIIRGVQVLCSKLIVVRGDGELLKEAQENAT 829

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L F  LLRS  +++R+++E +L R +FEWV+GEIES+F +S+V
Sbjct: 830  LLFQCLLRSRLSARRIIEEFKLNRSSFEWVVGEIESQFQKSIV 872


>gi|329132887|gb|AEB78334.1| RNA polymerase II largest subunit [Percolomonas cosmopolitus]
          Length = 1028

 Score = 1013 bits (2620), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/1071 (49%), Positives = 702/1071 (65%), Gaps = 86/1071 (8%)

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADED---------DHKFK--- 122
            ECPGHFGH+ LA+ +FHI ++ TV  I+R +C+ CSK+L D D         D   K   
Sbjct: 1    ECPGHFGHINLAQDVFHISYVTTVAKILRCICYKCSKLLVDIDSGDGLNQAGDENRKRIY 60

Query: 123  ---QALKIRNPKN-RLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPK- 177
               Q+LK   PK+ R +K++   +   +C+                     GC  +QPK 
Sbjct: 61   ERYQSLKNIVPKSKRFEKMVQLSREVHRCKND-------------------GCTEEQPKS 101

Query: 178  LTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
               +G+K+    +A  + N+ +   PE  + K           L+RISDE  + LG  P+
Sbjct: 102  YKTDGLKI----EAILRNNNRENITPEAAKLK-----------LERISDEHARDLGFEPE 146

Query: 238  YARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAH 287
            + RP WMIL  LP+ PP VRPS          DDLT++L+ I++ N  LR +E+NG    
Sbjct: 147  HIRPHWMILSKLPVVPPCVRPSIEHGTAGAGQDDLTYKLSDIVKTNNRLREKEKNGETDF 206

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
             ISE   LL  ++A   DN  P   +A Q+SGR +K I SRLK KEGR+R NLMGKRVDF
Sbjct: 207  NISETRDLLMLYVAQMMDNTNPKLTQAIQKSGRVLKCISSRLKGKEGRLRNNLMGKRVDF 266

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVITPDP + IDQ+GVP SIA N+T+PE VT YN+ERLKE VE G   P    GAK+
Sbjct: 267  SARTVITPDPNLEIDQVGVPISIASNMTFPERVTLYNMERLKEKVENGSEYP----GAKF 322

Query: 408  IIRDDGQRLDLRYLKKSSDHHLEL--GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            II  DG  +D+     +SD + +L  GY VERH+ D D +LFNRQP+LHKMS+MGHR+K+
Sbjct: 323  IIHKDGTSVDVEL---ASDEYKQLQPGYIVERHVEDDDLILFNRQPTLHKMSMMGHRVKV 379

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
            +PYSTFRLN+SVTSPYNADFDGDEMN+H+PQS   +AE+ E+MMV K IVS Q N PV+ 
Sbjct: 380  LPYSTFRLNVSVTSPYNADFDGDEMNLHLPQSLGAKAELQEMMMVSKNIVSTQGNAPVIA 439

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWW-EDFDGKVPQPTILKPRPLWTGKQVFNLI 584
            IVQD LLG   +TKRD F+EKD+ MN  M   E+F+G++PQP ILKP+ LW+GKQ+F+L+
Sbjct: 440  IVQDALLGSVLMTKRDVFLEKDIMMNCCMRLKENFNGELPQPCILKPKQLWSGKQLFSLV 499

Query: 585  IPK-QINLFRTAAWHADNDKGI-------LTAGDTLVRIEKGELLSGTLCKKTLGTSTGS 636
            +   ++NLFR A  + D  K +       +   DT V I +GEL+SG   K+TLG   GS
Sbjct: 500  LKGCEVNLFREANQYDDVKKIMGKEFDEDICPMDTKVVISRGELISGVADKRTLGKGGGS 559

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            LIH I+ E     A  FL   QW+VNYW+LQ+ +SIG+ DTIAD  T + +  T+SKA  
Sbjct: 560  LIHTIFNEYSFIEASNFLNTLQWVVNYWMLQHGYSIGVEDTIADENTADQVQQTLSKAHE 619

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
             V   IK+AQ+  L+ +PG ++ ESFE  VN+ LN +   AG ++  SLS+ N +K MV 
Sbjct: 620  EVSKYIKEAQEGKLKSKPGMSLQESFEAAVNKTLNDSMSSAGKNSASSLSKRNRIKTMVV 679

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
             GSKGS  NISQ+ ACVGQQN+EGKRI FGF  RTLPHF ++D+ P SRGFV+NSYLRGL
Sbjct: 680  GGSKGSNTNISQIIACVGQQNIEGKRITFGFRKRTLPHFEQNDHRPISRGFVQNSYLRGL 739

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
             PQEFFFH MGGREGLIDTAVKT++TGYIQRRL+K+MED  VKYDGTVR+S G+++QFLY
Sbjct: 740  LPQEFFFHTMGGREGLIDTAVKTAKTGYIQRRLIKSMEDFQVKYDGTVRDSAGNILQFLY 799

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNP----NYMLQEYIDDLKTIKE 932
            GEDGMD V +ESQ     KM   +F + +++E    + +P     Y+ Q+  ++  T   
Sbjct: 800  GEDGMDGVKLESQYFGMYKMSDKKFSETYQYETKNGSLSPEFGSKYLSQKIHEEFVTTPS 859

Query: 933  LRDVFDAEVQKLEADRYQLATEIATS-GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMH 991
               + +AE Q+L  DR  L   I ++        PVN+KRL+ NA K +    R  SD+ 
Sbjct: 860  RIHILEAEYQQLLRDRELLRDSIFSNPTIKKLCQPVNIKRLLLNASKKYL--NRGKSDLD 917

Query: 992  PMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAF 1051
            P+ +++ V++L ++L V+ G+D L+ EAQ+NAT+  NIL+R   ASK V+ +H+L    F
Sbjct: 918  PIVIIQKVEELSKKLVVISGDDYLAREAQQNATILVNILIRFNLASKVVITKHKLNANGF 977

Query: 1052 EWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKN 1102
            EW++GEIE+ F ++ V PGEM+G +AAQSIGEPATQMTLNTFH+AGVSAKN
Sbjct: 978  EWILGEIETTFKRAFVQPGEMVGALAAQSIGEPATQMTLNTFHFAGVSAKN 1028


>gi|397135874|gb|AFO11432.1| RNA polymerase I, partial [Hyphopichia burtonii]
          Length = 872

 Score = 1013 bits (2620), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/883 (57%), Positives = 650/883 (73%), Gaps = 22/883 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN ++ + PE    ++ LT   +L V K IS EDC  LG N  YARP+WM++ VLP+PPP
Sbjct: 2    KNFEENEQPE----RRLLTPAEILSVFKHISSEDCFKLGFNEDYARPEWMLITVLPVPPP 57

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT +LA +I+ N N++R E +G+P H+ISEF  LLQFH+ATY 
Sbjct: 58   PVRPSIAFNDTARGEDDLTFKLADVIKANINVQRLEMDGSPQHVISEFEALLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  L+YPE VTPYNI +L E V  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 178  GVPISIARTLSYPEIVTPYNIHKLTEYVRNGPNEHPG---AKYVIRDTGDRIDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ ++  VP  IVS QSN+PVMGIVQDTL G RK+T RD+FI
Sbjct: 295  FDGDEMNLHVPQSPETRAELSQICAVPLQIVSAQSNKPVMGIVQDTLCGIRKMTLRDSFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MN+L W  ++DG +P P I+KP+PLW+GKQ+ ++ IPK I+L R      D+ K 
Sbjct: 355  EYDQVMNMLYWIPNWDGVIPPPAIVKPKPLWSGKQLLSMAIPKGIHLQR-----FDDGKN 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  D  + I  GE++ G + KKT+G + G LIH +  E G     +     Q +VN+W
Sbjct: 410  LLSPKDNGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGSQVCAQLFSAIQKVVNFW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIAD++TM T+  TI +AK+ V+ +I  AQ   L+PEPG T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADSETMRTVTTTIQEAKDKVQEIILDAQSNKLDPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ +L + NN+K MVT+GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  NVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E Q++D++      F+K 
Sbjct: 650  IQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDESFEKR 709

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            +R ++ + + +    L E    +K   +L+ V D E ++L+ DR  L     T+GD +WP
Sbjct: 710  YRIDVLDPSRSIAESLLESGKQIKGDVKLQKVLDDEYRQLQDDRRYLREVCFTNGDYNWP 769

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVNL+R+I NAQ+ F     + SD+   E+VE+V  L  +L V+ G+  L  EAQ+NAT
Sbjct: 770  LPVNLRRIIQNAQQIFHNGRHKASDLRLDEIVESVKDLCTKLLVIRGKSELVKEAQENAT 829

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L F  LLRS  AS+RV++E +L+R +FEWV+GEIE++F +S+V
Sbjct: 830  LLFQCLLRSRLASRRVIEEFKLSRISFEWVLGEIETQFQKSIV 872


>gi|397135910|gb|AFO11450.1| RNA polymerase I, partial [Yamadazyma scolyti]
          Length = 863

 Score = 1013 bits (2619), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/882 (57%), Positives = 649/882 (73%), Gaps = 29/882 (3%)

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP- 254
            N ++E+ PE    ++ L+   +L V + IS EDC  LG N  YARP+WM++ VLP+PPP 
Sbjct: 1    NKNEEEQPE----RRLLSPSEILNVFRHISSEDCHKLGFNEDYARPEWMLITVLPVPPPP 56

Query: 255  ---------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
                       R  DDLT +LA +++ N N++R E +G+P H+I+EF  LLQFH+ATY D
Sbjct: 57   VRPSIAFNDTARGEDDLTFKLADVLKANINVQRLELDGSPQHVIAEFEALLQFHVATYMD 116

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            N++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP + +DQ+G
Sbjct: 117  NDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQVG 176

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP SIA  L+YPE VTP+NI RL E V  GP+  PG   AKY+IRD G R+DLRY K++ 
Sbjct: 177  VPISIARTLSYPEIVTPFNIHRLTEYVRNGPNEHPG---AKYVIRDSGDRIDLRYNKRAG 233

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
            D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADF
Sbjct: 234  DIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADF 293

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD FIE
Sbjct: 294  DGDEMNLHVPQSPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFIE 353

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGI 605
             D  MN+L W  ++DG +P P +LKP+PLWTGKQ+ ++ IPK I++ R        +  +
Sbjct: 354  YDQVMNMLYWIPNWDGVIPPPAVLKPKPLWTGKQLLSMAIPKGIHIQRL-------ESNL 406

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
            L+  D  + I  GE++ G + KKT+G + G LIH +  E GP    +  G+ Q +VN+WL
Sbjct: 407  LSPNDNGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFGNIQKVVNFWL 466

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGDTIAD++TM+T+  TI +AK  V+ +I  AQ   LEPEPG T+ ESFE+ 
Sbjct: 467  LHNGFSIGIGDTIADSETMKTVTTTIEEAKTKVQEIILDAQRNKLEPEPGMTLRESFEHN 526

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            V++VLN ARD AG SA+ SL + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIPF
Sbjct: 527  VSRVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPF 586

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF DRTLPHFTKDDY PES+GF+ENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 587  GFSDRTLPHFTKDDYSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYI 646

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E Q++D++    + FDK +
Sbjct: 647  QRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGLDGTQVEKQSIDTIPGSDAAFDKRY 706

Query: 906  RFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL 965
            + ++  ++     +  E   ++K   +L+ + D E  +L  DR+ L T    +GDSSWPL
Sbjct: 707  KIDLLNDD-----LPIESAKEIKGDVDLQRLVDEEYSQLLKDRHYLRTICFPNGDSSWPL 761

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
            PVNL+R+I NAQ+ F    ++ SD+   +++  V  L  +L ++ G+ PL+ EAQ+NATL
Sbjct: 762  PVNLRRIIQNAQQIFHSGRQKVSDLKLDDIINGVKDLCTKLFIIRGDSPLAKEAQENATL 821

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
             F  LLRS  AS+RV++E +L + +FEWV+GEIE++F +S V
Sbjct: 822  LFQCLLRSRLASRRVIEEFKLNKVSFEWVVGEIETQFQKSAV 863


>gi|397135948|gb|AFO11469.1| RNA polymerase I, partial [Starmerella bombicola]
          Length = 869

 Score = 1012 bits (2617), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/884 (58%), Positives = 648/884 (73%), Gaps = 28/884 (3%)

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP--- 253
            D   +L  P   K+ LT   +  V + ISD D   LG++P YARP+W+++ VLP+PP   
Sbjct: 1    DKSSELDHP--EKRYLTPSEIYNVFRHISDTDIYNLGMDPDYARPEWLLVTVLPVPPPPV 58

Query: 254  -------PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
                      R  DDLT++LA II+ N N++R E  GAPAH+++EF  LLQ+H+ATY DN
Sbjct: 59   RPSIAVNETARGEDDLTYKLADIIKANANVQRSETEGAPAHVLNEFEMLLQYHVATYMDN 118

Query: 307  ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
             + GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRV+FSARTVIT DP + +DQ+GV
Sbjct: 119  NIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVNFSARTVITGDPNLELDQVGV 178

Query: 367  PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
            P SIA  L+YPETVTPYNI RL E V  GP+  PG   AKYIIRD G+R+DLRY K+  D
Sbjct: 179  PKSIARTLSYPETVTPYNIHRLTEYVRNGPNEHPG---AKYIIRDSGERIDLRYHKRVGD 235

Query: 427  HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 486
              L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MP+STFRLNLSVTSPYNADFD
Sbjct: 236  IQLQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPFSTFRLNLSVTSPYNADFD 295

Query: 487  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
            GDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+PVMGIVQDTL G RK+T RDTF++ 
Sbjct: 296  GDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDTFLDY 355

Query: 547  DVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGIL 606
                NIL W  ++DG VPQP ILKP+PLWTGKQ+ ++ IP  I + R      D +  I 
Sbjct: 356  HSVQNILFWVPNWDGVVPQPAILKPKPLWTGKQMVSMAIPPGIFMQRF-----DENNPIN 410

Query: 607  TAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 666
            +  D  + + KGE++ G + KKT+G + G LIH I+ E GP A  +F+G  Q +VNYWLL
Sbjct: 411  SPKDNGMLVYKGEVMYGVVNKKTVGATAGGLIHTIFREKGPQACSQFVGDLQKIVNYWLL 470

Query: 667  QNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKV 726
               FSIGIGDTIADA TM  +  TI+ AK+ V+ +I  AQ  +L PEPG T+ ESFE  V
Sbjct: 471  HVGFSIGIGDTIADAATMYNVTQTIADAKSKVQQIINDAQANTLNPEPGMTLRESFEASV 530

Query: 727  NQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 786
             + LN+ARD +G  A+ SL + NN+K MV+AGSKGSFINISQM+ACVGQQ VEGKRI FG
Sbjct: 531  IRELNSARDTSGREAETSLKDDNNVKQMVSAGSKGSFINISQMSACVGQQIVEGKRIGFG 590

Query: 787  FVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 846
            FVDR+LPHFT+DDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQ
Sbjct: 591  FVDRSLPHFTRDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQ 650

Query: 847  RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFR 906
            RRLVKA+ED+MV+YDG+ RNSLGDVIQF+YGEDG+D   +ESQTLDSL      F++ ++
Sbjct: 651  RRLVKALEDVMVQYDGSARNSLGDVIQFVYGEDGLDGGQVESQTLDSLPGSHESFERRYK 710

Query: 907  FEMDEENWNPNYMLQ---EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
             ++  +   P+  ++   E + DL+T +    + D+E  +L+ADR+ L + I   GD   
Sbjct: 711  VDVLNDQ-GPSLRIESASEIVGDLETQR----LLDSEFGQLQADRHILRSFIFKDGDYQK 765

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNA 1023
            PLPVNL+R+I NAQ+ F VD  R SD+   E++E V  L +   VV   D + VEAQ+NA
Sbjct: 766  PLPVNLRRVIQNAQQIFNVDQHRVSDLTVKEIIEKVQDLCDNKLVVVRGDGIRVEAQENA 825

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            TL F  L+RS  A+KR+++E+RL+R AFEWV+GEIE++F +SLV
Sbjct: 826  TLLFKCLVRSRLATKRIVQEYRLSRIAFEWVLGEIETQFAKSLV 869


>gi|397135926|gb|AFO11458.1| RNA polymerase I, partial [Sporopachydermia lactativora]
          Length = 871

 Score = 1012 bits (2617), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/883 (57%), Positives = 639/883 (72%), Gaps = 23/883 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN +    PE    ++ LT   +L V K IS ED   LG N  +ARP+WMI+ VLP+PPP
Sbjct: 2    KNYEDSDQPE----RRVLTPSEILNVFKHISPEDSTKLGFNEDFARPEWMIVSVLPVPPP 57

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT++LA I++ N  ++R E+ GAP H+ SEF  LLQFH+ATY 
Sbjct: 58   PVRPSVAVNDTARSEDDLTYKLADILKANAQVQRCEQEGAPQHVTSEFENLLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A  +SGRPIK+I +RLK KEGR+RGNLMGKRVDFSARTVI+ DP + +DQ+
Sbjct: 118  DNDIAGQPQALHKSGRPIKAIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPETVTPYNI+RL ELV  GP+  PG   A+Y+IRD G R+DLRY K++
Sbjct: 178  GVPRSIARTLTYPETVTPYNIQRLSELVRNGPNEHPG---ARYVIRDSGDRIDLRYHKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERH+NDGD VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQFGWKVERHINDGDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS E RAE+ +L +VP  IVSPQSN+PVMGIVQDTL G RK+T RD FI
Sbjct: 295  FDGDEMNLHVPQSEEARAELSQLCLVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MN+  W  ++DG +PQP ILKP+PLWTGKQ+ ++ IPK I+L R       +DK 
Sbjct: 355  EYDKVMNLCYWIPEWDGVIPQPAILKPKPLWTGKQMVSMAIPKGIHLQRV------DDKN 408

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
             L   D  + I  GE++ G + KK++G ++G +IH I +  GP  A KF G+ Q LVNYW
Sbjct: 409  RLNPKDNSMLIIDGEIIYGVVDKKSVGATSGGIIHTIRQSKGPQVAAKFFGNVQKLVNYW 468

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIADA TM  I  TI+ AK  V+ +  +AQ   LE  PG T+  +FE+
Sbjct: 469  LLHNGFSIGIGDTIADASTMREITTTIADAKKKVEEITLKAQRDELELLPGMTLRSTFES 528

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V  VLN ARD AG S++ +L   NN+K MV AGSKGSFINISQM+ACVGQQ VEGKR+P
Sbjct: 529  LVTSVLNQARDNAGKSSEVNLKNDNNVKQMVVAGSKGSFINISQMSACVGQQIVEGKRVP 588

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DRTLPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 589  FGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 648

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E Q+LD+L      F + 
Sbjct: 649  IQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGLDGAQVEKQSLDTLPGSDEAFVRR 708

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            ++ ++ +     +  L E    +    E++ + D E  +L ADR  L   +  +G+S WP
Sbjct: 709  YKIDVMDSKHGIDPNLIESGTSIFGDVEVQSILDEEYDQLCADRAFLRNFVFPTGESGWP 768

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVN++R++ +AQ+ F+VD  + SD+   E+V +V  +  RL+V+ GE PL  EA++NAT
Sbjct: 769  LPVNIRRVLEDAQQIFRVDKSKASDLSIPEIVTSVRDMCSRLRVIGGESPLISEARRNAT 828

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
              F  L+RS  A+KRVL E+ L + +F+WV+GEIES F +++V
Sbjct: 829  SLFQCLVRSRLATKRVLSEYHLNKTSFDWVLGEIESLFQKAIV 871


>gi|397135906|gb|AFO11448.1| RNA polymerase I, partial [Yamadazyma philogaea]
          Length = 865

 Score = 1011 bits (2614), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/883 (57%), Positives = 650/883 (73%), Gaps = 32/883 (3%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            ++DDQ   PE    ++ LT   +L V + IS  DC  LG N  YARP+WM++ VLP+PPP
Sbjct: 5    ESDDQ---PE----RRLLTPSEILNVFRHISSYDCFKLGFNEDYARPEWMLITVLPVPPP 57

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT +LA +++ N N++R E +G+P H+ISEF  LLQFH+ATY 
Sbjct: 58   PVRPSIAFNDTARGEDDLTFKLADVLKANINVQRLEMDGSPQHVISEFEALLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  L+YPE VTP+NI RL E V  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 178  GVPLSIARTLSYPEIVTPFNIHRLTEYVRNGPNEHPG---AKYVIRDSGDRIDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD FI
Sbjct: 295  FDGDEMNLHVPQSQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MN+L W   +DG +P P ++KP+PLWTGKQ+ ++ IPK I+L R        +  
Sbjct: 355  ELDQVMNMLYWIPTWDGVIPPPAVMKPKPLWTGKQLLSIAIPKGIHLQRL-------ESS 407

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  D  + I  GE++ G + KKT+G++ G LIH ++ E  P    +   + Q +VN+W
Sbjct: 408  LLSPKDNGMLIVDGEIMFGVVDKKTVGSTGGGLIHTVFREKSPQVCAQLFSNIQKVVNFW 467

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIAD++TM+ +  TI +AK+ V+++I  AQ   LEPE G T+ E+FEN
Sbjct: 468  LLHNGFSIGIGDTIADSETMKVVTTTIEEAKSKVQDIIMNAQRDKLEPEAGMTLRETFEN 527

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ SL + NN+K MVT+GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 528  NVSRVLNQARDTAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIP 587

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DRTLPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 588  FGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 647

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLGD++QFLYGEDGMD   +E Q++D++    + F+K 
Sbjct: 648  IQRRLVKALEDIMVHYDGTTRNSLGDIVQFLYGEDGMDGTQVEKQSVDTIPGSDAVFEKR 707

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            ++ ++  +      +  E   ++K   EL+ V D E ++L+ DR  L T    +GDSSWP
Sbjct: 708  YKIDLLHDE-----LPIESAKEIKGDVELQKVLDEEFEQLKKDREYLRTVCFPNGDSSWP 762

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVN++R++ NAQ+ F    ++ SD+   EVV  V  L  +L VV G+ PL+ EAQ+NAT
Sbjct: 763  LPVNMRRIVQNAQQIFHSGRQKVSDLKLDEVVNDVKDLCSKLLVVRGDSPLAKEAQENAT 822

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L F  L+RS  A++RV++E++L + +FEWV+GEIE++F +S V
Sbjct: 823  LLFQCLVRSRLAARRVIEEYKLNKVSFEWVVGEIENQFQKSAV 865


>gi|397135908|gb|AFO11449.1| RNA polymerase I, partial [Yamadazyma mexicana]
          Length = 863

 Score = 1011 bits (2614), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/883 (57%), Positives = 649/883 (73%), Gaps = 31/883 (3%)

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP- 254
            N ++E+ PE    ++ L+   +L V + IS +DC  LG +  YARP+WM++ VLP+PPP 
Sbjct: 1    NKNEEEQPE----RRLLSPSEILNVFRHISPQDCYRLGFSEDYARPEWMLITVLPVPPPP 56

Query: 255  ---------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
                       R  DDLT +LA +++ N N++R E +G+P H+ISEF  LLQFH+ATY D
Sbjct: 57   VRPSIAFNDTARGEDDLTFKLADVLKANINVQRLEMDGSPQHVISEFEALLQFHVATYMD 116

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            N++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+G
Sbjct: 117  NDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVG 176

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP SIA  L+YPE VTPYNI RL E V  GP+  PG   AKY+IRD G R+DLRY K++ 
Sbjct: 177  VPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEHPG---AKYVIRDSGDRIDLRYNKRAG 233

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
            D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADF
Sbjct: 234  DIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADF 293

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD+FIE
Sbjct: 294  DGDEMNLHVPQSPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDSFIE 353

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAA-WHADNDKG 604
             D  MN+L W   +DG +P P ++KP+PLWTGKQ+ ++ IPK I+L R  +     ND G
Sbjct: 354  YDQVMNMLYWIPTWDGVIPPPAVMKPKPLWTGKQLLSMAIPKGIHLQRLESNLSCPNDNG 413

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L        I  GE++ G + KKT+G + G LIH +  E GP    +   + Q +VNYW
Sbjct: 414  ML--------IVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSNIQKVVNYW 465

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIAD+ TM+T+  TI +AK  V+ +I  AQ   LEPEPG T+ ESFE+
Sbjct: 466  LLHNGFSIGIGDTIADSDTMKTVTTTIEEAKAKVQEIILNAQRNKLEPEPGMTLRESFEH 525

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ SL + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 526  NVSRVLNQARDTAGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIP 585

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DRTLPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 586  FGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 645

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E Q++D++    + F+K 
Sbjct: 646  IQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDAAFEKR 705

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            ++ ++  ++     +  E   ++K   EL+ V D+E ++L+ DR+ L T    +GDSSWP
Sbjct: 706  YKIDLLNDD-----LPIESGKEIKGDVELQRVLDSEFEQLKQDRHYLRTVCFPNGDSSWP 760

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVNL+R+I NAQ+ F    ++ SD+   E++E V  L  +L ++ G   L+ EAQ NAT
Sbjct: 761  LPVNLRRIIQNAQQIFHSGRQKVSDLRIDEIIEGVRDLCGKLSIIRGNSELAKEAQANAT 820

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            + F  LLRS  A++RV++E +L + +FEWV+GEIE++F +S V
Sbjct: 821  MLFQCLLRSRLATRRVIEEFKLNKVSFEWVMGEIENQFQKSTV 863


>gi|397135918|gb|AFO11454.1| RNA polymerase I, partial [Citeromyces matritensis]
          Length = 860

 Score = 1011 bits (2613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/875 (56%), Positives = 634/875 (72%), Gaps = 30/875 (3%)

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
            +DDQ +       ++ +T   +L V K IS +DC  LG N  ++RP+W+++ V+P+PPP 
Sbjct: 4    DDDQAE-------RRVITPSEILNVFKLISPKDCFRLGFNEDFSRPEWLLVTVIPVPPPQ 56

Query: 256  VRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
            VRPS          DDLT++L  I++ N N+++ E +G+P H+ISEF  LLQFH+ATY D
Sbjct: 57   VRPSIAMSETMRSEDDLTYKLGDILKANINVQKLEMDGSPQHVISEFETLLQFHVATYMD 116

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            NE+ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+G
Sbjct: 117  NEIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVG 176

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP SIA  L+ PE VTPYNI +L ELV  GP+  PG   AKY+IRD G R+DLRY K++ 
Sbjct: 177  VPKSIARTLSXPEVVTPYNIHKLTELVRNGPNEHPG---AKYVIRDTGDRIDLRYHKRAG 233

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
            D  L+ G++VERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADF
Sbjct: 234  DIDLQYGWRVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADF 293

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+PVMGIVQDTL G RK+T RD+FI+
Sbjct: 294  DGDEMNLHVPQSEETRAELSQLCSVPSQIVSPQSNKPVMGIVQDTLCGVRKMTLRDSFID 353

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT--AAWHADNDK 603
             D  M++L W   +DG +PQP ILKP+PLW+GKQ+F++ IP+ I+L R   A + + ND 
Sbjct: 354  YDQVMSMLFWIPQWDGVIPQPAILKPKPLWSGKQLFSMAIPRGIHLLRLDGATYLSPNDT 413

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
            G++        I  GE++ G + KKT+G++ G L+H +  E G        G+ Q +VN+
Sbjct: 414  GMM--------IRNGEVMFGVVDKKTVGSAGGGLVHTVMREKGSAICSDLFGNIQKVVNF 465

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            WLL N FSIGIGDTIAD  TM  I DTI++AK  V+ +I  AQ   LE EPG T+ E+ E
Sbjct: 466  WLLHNGFSIGIGDTIADGSTMREITDTITRAKEEVQEIILDAQSNQLEAEPGMTLRETXE 525

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
            +KV++ LN ARD AG SA+ SL + NN+K MVT+GSKGSFINISQM+ACVGQQ VEGKRI
Sbjct: 526  SKVSRTLNQARDSAGRSAEMSLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRI 585

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
            PFGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGL DTAVKT+ TG
Sbjct: 586  PFGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLXDTAVKTASTG 645

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRRLVKA+EDIMV YDGT RNSLGD++QF+YGEDG+D   +E Q +D++    ++F K
Sbjct: 646  YIQRRLVKALEDIMVHYDGTTRNSLGDIVQFIYGEDGLDGTQVEKQPVDTIPGSDADFMK 705

Query: 904  AFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
             ++ ++        +   +Y  ++    EL+   D E  +L  DR  L  E+  +GD +W
Sbjct: 706  RYKVDLMTPGGGXRHEAVDYGTEILGDVELQKYLDQEYDQLVEDRKFLRNEVFLNGDYNW 765

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNA 1023
            PLPVNL+R+I NAQ+ F VD  R SD+   ++V  V  L  +L V+ GE  L  EAQ+NA
Sbjct: 766  PLPVNLRRVIQNAQQIFHVDQSRASDLAIPDIVNGVKDLCSKLLVLRGESRLIEEAQQNA 825

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            T  F  L+RS  A++RVL+E RL+  AFEWV+G I
Sbjct: 826  TRLFQCLIRSRXATRRVLEEFRLSHAAFEWVLGTI 860


>gi|397135854|gb|AFO11422.1| RNA polymerase I, partial [Candida abiesophila]
          Length = 870

 Score = 1011 bits (2613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/875 (58%), Positives = 643/875 (73%), Gaps = 23/875 (2%)

Query: 204  EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------- 256
            E +ERKQ +    VL   KRIS EDC  LG + ++ARP+WMIL VLP+PPPPV       
Sbjct: 8    ENMERKQ-IHPXDVLAAFKRISSEDCIKLGFDEEWARPEWMILTVLPVPPPPVRPSVAXT 66

Query: 257  ---RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++LA I++ N N+++ E +G+P H+ SEF  LLQ+H+ATY DN++ GQP 
Sbjct: 67   DSKRSEDDLTYKLADILKANINVQKFETDGSPQHVXSEFEALLQYHVATYMDNDIAGQPX 126

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A   SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP + +D++GVP SIA  
Sbjct: 127  AXXXSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLELDEVGVPRSIAKT 186

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            L+YPE VTPYNI++L E+V  GP+  PG   AKY+IRD+G R+DLR+ K++ D  L+ G+
Sbjct: 187  LSYPEIVTPYNIQKLTEMVRNGPNEHPG---AKYVIRDNGDRIDLRFNKRAGDIQLQYGW 243

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYST R+NLSVTSPYNAD DGDEMN+H
Sbjct: 244  KVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVMPYSTXRMNLSVTSPYNADXDGDEMNLH 303

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD FIE D  MN+ 
Sbjct: 304  VPQSXETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTXRDNFIEYDQVMNMC 363

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLV 613
             W  D+DG VPQP I KP+PLW+GKQV +L I K I L R        D  +L+  D+ +
Sbjct: 364  YWIPDWDGIVPQPCIFKPKPLWSGKQVLSLCISKGIFLQRL-------DGSMLSPKDSGM 416

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
             I  GE++ G + K T+G S G LIH    E G     K  G+ Q +VNYWLL N FSIG
Sbjct: 417  LILNGEIMFGVVNKATVGPSAGGLIHTTMREKGSTVCAKMFGNIQKVVNYWLLHNGFSIG 476

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGD IAD +TM+TI +TI +AK  V+N+IK AQ   LEPEPG T+ ESFE KV+++LN A
Sbjct: 477  IGDAIADPETMKTITETIREAKEKVQNVIKDAQANLLEPEPGMTIRESFEQKVSKILNEA 536

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RD AG SA+ SL +SNN+K MVTAGSKGS+INISQM+ACVGQQ VEG+RI FGF DRTLP
Sbjct: 537  RDSAGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGRRIHFGFADRTLP 596

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HFTKDDY  ES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRL+KA+
Sbjct: 597  HFTKDDYSAESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLLKAL 656

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEE 912
            EDIMV YDGT RNSLGDVIQFLYGEDG+D+  +E QT+D++    +EF+K +R + MDE+
Sbjct: 657  EDIMVHYDGTTRNSLGDVIQFLYGEDGLDATTVEKQTIDTIPGSNAEFEKKYRVDLMDEK 716

Query: 913  NWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRL 972
                  ++    + L  I EL+ + D E  +L  DR  L T +  +GD++WPLPVN++R+
Sbjct: 717  KSIRTDLIXSGSEILGDI-ELQKILDEEYDQLLKDREYLRTVVFPNGDNNWPLPVNIRRV 775

Query: 973  IWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 1032
            I NAQ+ F VD  + SD+   ++V+ V  L +   VV G+  +  EAQ NATL F  L+R
Sbjct: 776  IQNAQQIFHVDQYKASDLTISDIVKGVQALAKLFTVVRGKGEIMEEAQSNATLLFECLVR 835

Query: 1033 STFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            S  A++RVL+E RL ++AFEWV+G IE +F +SLV
Sbjct: 836  SRLATRRVLEEFRLNKDAFEWVVGTIEQQFARSLV 870


>gi|397135892|gb|AFO11441.1| RNA polymerase I, partial [Debaryomyces hansenii]
          Length = 872

 Score = 1010 bits (2612), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/883 (57%), Positives = 645/883 (73%), Gaps = 22/883 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN D+ + PE    ++ LT   +L V K I+ +DC  LG N  YARP+WM++ VLP+PPP
Sbjct: 2    KNFDENEQPE----RRLLTPSEILSVFKHINSQDCYRLGFNEDYARPEWMLITVLPVPPP 57

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT +LA +++ N N++R E +G+P H+ISEF  LLQFH+ATY 
Sbjct: 58   PVRPSIAFNDTARGEDDLTFKLADVLKANINVQRLEMDGSPQHVISEFEALLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  L+YPE VTPYNI RL E V  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 178  GVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEHPG---AKYVIRDTGDRIDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD FI
Sbjct: 295  FDGDEMNLHVPQSQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MN+L W  ++DG +P P I+ P+PLWTGKQ+ ++ IPK I+L R      D+ K 
Sbjct: 355  EYDQVMNMLYWIPNWDGVIPPPAIVSPKPLWTGKQLLSMAIPKGIHLQR-----FDDGKN 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  D  + +  GE++ G + KKT+G + G LIH +  E G     +     Q +VN+W
Sbjct: 410  LLSPKDNGMLVVDGEIMFGVVDKKTVGATGGGLIHTVMREKGSQVCAQLFSSIQKVVNFW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIAD+ TM  +  TI  AK+ V+ +I  AQ   LEPEPG T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADSSTMRDVTTTIQDAKDKVQEIILDAQSNKLEPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ +L + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  NVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDG+ RNSLGD+IQF+YGEDG+D   +E Q++D++      F+K 
Sbjct: 650  IQRRLVKALEDIMVHYDGSTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDESFEKR 709

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            +R ++ + + +    L E   ++K   +L+ V D E ++LEADR  L      +GD +WP
Sbjct: 710  YRIDVLDPSKSIRESLLESGKEIKGDVKLQKVLDEEYRQLEADRRYLRDVCFPNGDFNWP 769

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVNL+R+I NAQ+ F     + SD+   EVV  V  L  +L V+ G+  L+ EAQ+NAT
Sbjct: 770  LPVNLRRIIQNAQQIFHNGRHKASDLRLDEVVRGVQDLCTKLLVIRGKTALTKEAQENAT 829

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L F  LLRS  A++RV++E +L+R +FEWV+GEIE++F +S+V
Sbjct: 830  LLFQCLLRSRLATRRVIEEFKLSRISFEWVMGEIETQFQKSIV 872


>gi|397135870|gb|AFO11430.1| RNA polymerase I, partial [Metschnikowia agaves]
          Length = 872

 Score = 1010 bits (2611), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/886 (57%), Positives = 648/886 (73%), Gaps = 28/886 (3%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            K+ D+ + PE    ++ LT   +L V + IS EDC  LG N  YARP+WM++ VLP+PPP
Sbjct: 2    KSYDENEQPE----RRLLTPSEILSVFRHISPEDCHKLGFNEDYARPEWMLITVLPVPPP 57

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT +LA I++ N N++R E +G+P H+ISEF  LLQFH+ATY 
Sbjct: 58   PVRPSIAFNDTARGEDDLTFKLADILKANINVQRLEIDGSPQHVISEFEALLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPE VTPYNI RL E V  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 178  GVPISIARTLTYPEVVTPYNIHRLTEYVRNGPNEHPG---AKYVIRDTGDRIDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD FI
Sbjct: 295  FDGDEMNLHVPQSPETRAEMSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E +  MN+L W  ++DG +P P ++KP+PLWTGKQ+ ++ IPK I+L R      D+ + 
Sbjct: 355  EYEQVMNMLYWIPNWDGVIPPPAVIKPKPLWTGKQLLSMAIPKGIHLQR-----FDDGRD 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  D  + I  GE++ G + KKT+G + G LIH +  E GP    +     Q +VNYW
Sbjct: 410  MLSPKDKGILIVDGEIIFGVVDKKTVGATGGGLIHTVMREKGPQICAQLFSSIQKVVNYW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIAD  TM  +  TI +AK  V+ +I  AQ   LEPEPG T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADKDTMRDVTITIQEAKQKVQEIILDAQQNKLEPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ +L + NN+K MVT+GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  NVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E Q++D++    + F+K 
Sbjct: 650  IQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTSVEKQSVDTIPGPDASFEKR 709

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQLATEIATSGDS 961
            +R ++ +E+   N +L+  ++  K IK    L+ V D E  +L  DR  L   +  +GD 
Sbjct: 710  YRVDLLDED---NCILESLLESGKQIKGDVTLQKVLDEEYNQLLEDRKFLREVVFPNGDY 766

Query: 962  SWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQK 1021
            +W LPVNL+R+I NAQ+ F    ++ SD+   E+VE V +L  +L V+ G+  L  EAQ+
Sbjct: 767  NWSLPVNLRRIIQNAQQIFHSGRQKASDLKLDEIVEGVRRLCSKLLVIRGKSDLVKEAQE 826

Query: 1022 NATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            NATL F  LLRS  AS+RV++E +L + +FEWV GEIE++F +S+V
Sbjct: 827  NATLLFQCLLRSRLASRRVIEEFKLNKVSFEWVCGEIETQFQKSVV 872


>gi|397135844|gb|AFO11417.1| RNA polymerase I, partial [Lachancea thermotolerans]
          Length = 871

 Score = 1009 bits (2609), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/892 (57%), Positives = 655/892 (73%), Gaps = 40/892 (4%)

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
            K  DD +Q PE    ++ ++A+ VL V K IS ED   LG N  +ARP+WMIL VLP+PP
Sbjct: 2    KGADDADQ-PE----RRVISADEVLNVFKHISPEDSVRLGFNEDFARPEWMILTVLPVPP 56

Query: 254  PPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
            PPV          R  DDLT++L  I++ N N++R E NG+P H+I E   LLQFH+ATY
Sbjct: 57   PPVRPSISFNETQRGEDDLTYKLGDILKANINVQRLEINGSPQHVIQESEALLQFHVATY 116

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP+A Q+SGRPIKSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP +++DQ
Sbjct: 117  MDNDIAGQPQALQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQ 176

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKYIIRD+G R+DLRY K+
Sbjct: 177  VGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYIIRDNGDRIDLRYSKR 233

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            + D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNA
Sbjct: 234  AGDIQLQYGWKVERHIIDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNA 293

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETRAE+ +L  VP+ IVS QSN+P MGIVQDTL G RK+T RDTF
Sbjct: 294  DFDGDEMNLHVPQSEETRAELSQLCAVPQQIVSAQSNKPCMGIVQDTLCGVRKMTLRDTF 353

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            IE D  +N+L W  D+DG +P P ILKP+PLW+GKQ+ ++ IP  I+L R      D   
Sbjct: 354  IELDQVLNMLYWIPDWDGVIPTPIILKPKPLWSGKQILSIAIPSGIHLQRF-----DEGT 408

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
             +L+  D  + I  G+++ G + KKT+G+S+G LIHV+  E GP    +   + Q +VN+
Sbjct: 409  TLLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPKICARLFSNLQKVVNF 468

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            WLL N FSIGIGDTIAD K+M  I + I  AK  V+ + K+AQ   L  + G T+ ESFE
Sbjct: 469  WLLHNGFSIGIGDTIADEKSMREITEAIIVAKRKVEEVTKEAQANLLTAKHGMTLRESFE 528

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
            + V + LN ARD+AG SA+ +L + NN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI
Sbjct: 529  DSVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRI 588

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
             FGF DRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETG
Sbjct: 589  AFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETG 648

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRRLVKA+EDIMV YDGT RNSLG+VIQF+YGEDGMD+  IE QT+D++    + F++
Sbjct: 649  YIQRRLVKALEDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQTIDTIASSDAAFER 708

Query: 904  AFRFEMDEENWNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEI 955
             FR ++     NP + L         E I DLK    L+ + D E ++L  DR +   +I
Sbjct: 709  RFRIDL----LNPRHALDPSLLESGSEIIGDLK----LQALLDEEFKQLVEDR-EFLRKI 759

Query: 956  ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPL 1015
               G+ +WPLPVN++R+I NAQ+TF++D  +P+D+   +VV  V +LQE+L V+ G+  +
Sbjct: 760  FVDGEQNWPLPVNIRRIIQNAQQTFRIDQTKPTDLTIRDVVYGVKELQEKLLVLRGKSKI 819

Query: 1016 SVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
              EAQ+NA   F  LLRS  A++RV++E+RL ++ FEWV+  +ES+FL+S+V
Sbjct: 820  LQEAQQNAVTLFCCLLRSRLATRRVIQEYRLNKQTFEWVLSNVESQFLRSIV 871


>gi|397135876|gb|AFO11433.1| RNA polymerase I, partial [Hyphopichia heimii]
          Length = 872

 Score = 1009 bits (2608), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/883 (57%), Positives = 645/883 (73%), Gaps = 22/883 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN ++ + PE    ++ LT   +L V + IS EDC  LG N  YARP+W+++ VLP+PPP
Sbjct: 2    KNFEENEQPE----RRLLTPSEILSVFRHISAEDCHRLGFNEDYARPEWLLITVLPVPPP 57

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT +LA +++ N N++R E +G+P H+ISEF  LLQFH+ATY 
Sbjct: 58   PVRPSIAFNDTARGEDDLTFKLADVLKANINVQRLEMDGSPQHVISEFEALLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  L+YPE VTPYNI RL E V  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 178  GVPISIARTLSYPEIVTPYNIHRLTEYVRNGPNEHPG---AKYVIRDTGDRIDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+  +  VP  IVSPQSN+PVMGIVQDTL G RK+T RDTFI
Sbjct: 295  FDGDEMNLHVPQSPETRAELSLICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDTFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MN+L W  ++DG +P P I+KP+PLW+GKQ+ ++ IPK I+L R      D+   
Sbjct: 355  EYDQVMNMLYWIPNWDGVIPPPAIVKPKPLWSGKQLLSMAIPKGIHLQR-----FDDGTN 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +++  D  + I  GE++ G + K T+G + G LIH +  E GP    +     Q +VNYW
Sbjct: 410  LMSPKDNGMLIVDGEIMFGVVTKLTVGATGGGLIHTVMREKGPYVCAQLFSAIQKVVNYW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIAD+ TM+T+  TI +AKN V+ +I +AQ   LEPEPG T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADSDTMKTVTTTIQEAKNKVQEIILEAQQNKLEPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ +L + NN+K MVT+GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  NVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFADRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E Q++D++      F++ 
Sbjct: 650  IQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSHENFERR 709

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            +R ++ + + +    L +   +++    L+ V D E  +L  DR  L      +GD +WP
Sbjct: 710  YRIDVLDTSKSIAESLLQSGKEIRGDVNLQKVLDEEYNQLLDDRRYLREVCFPNGDYNWP 769

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVNL+R+I NAQ+ F     + SD+   E+V  V  L  +L VV G++ LS EAQ NAT
Sbjct: 770  LPVNLRRIIQNAQQIFHNGRHKASDLRLDEIVNEVKTLCTKLMVVRGDNQLSREAQANAT 829

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L F  LLRS  A++RV++E +L R +FEWV+GEIE++F +S+V
Sbjct: 830  LLFQCLLRSRLAARRVIEEFKLNRISFEWVLGEIETQFQKSIV 872


>gi|380495547|emb|CCF32312.1| DNA-directed RNA polymerase II subunit RPB1 [Colletotrichum
            higginsianum]
          Length = 1192

 Score = 1008 bits (2607), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 576/1186 (48%), Positives = 768/1186 (64%), Gaps = 122/1186 (10%)

Query: 553  LMWWEDFDG-KVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTA 608
            ++W  ++DG  +P P I++PRP WTGKQ+ ++ +P  ++L        DN   D+G+L  
Sbjct: 1    MLWVPNWDGCIIPPPAIVRPRPRWTGKQIMSMAVPNIVSLHSAPDSKEDNPLKDEGLL-- 58

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
                  I+ G+++ G L KK +G ++G ++H+++ E GP+AA KFL   Q  VNYWLL N
Sbjct: 59   ------IQSGQIMYGLLSKKNIGAASGGIVHIVYNEHGPEAAMKFLNGVQQTVNYWLLHN 112

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDTI D  T+E +   I + K  V+   +QA    LEP PG  + E+FE+KV++
Sbjct: 113  GFSIGIGDTIPDKVTIEKVQVHIDEHKAEVEEFTRQATANELEPLPGMNIRETFESKVSK 172

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
             LNTARD+AG++ QKSL + NN   M ++GSKGS INISQMTA VGQQ VEGKRIPFGF 
Sbjct: 173  ALNTARDKAGTTTQKSLKDLNNAVTMASSGSKGSSINISQMTALVGQQIVEGKRIPFGFK 232

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             RTLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRR
Sbjct: 233  YRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRR 292

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKA+ED+  KYDGTVRNSLGD++QFLYGEDG+D+++IE Q +D L M   +F   FR +
Sbjct: 293  LVKALEDVSAKYDGTVRNSLGDILQFLYGEDGLDAIYIEKQRMDHLNMSNKKFADRFRLD 352

Query: 909  MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL-ATEIATSGDSSWPLPV 967
            +  EN        EY +++     ++ + D E + L ADR Q+         D S  LP+
Sbjct: 353  VMAENRPEELEWLEYGNEIAGDPAVQQLLDEEFEALTADRKQVRQINFKRKDDESMQLPL 412

Query: 968  NLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFF 1027
            N+ RL+  ++K F V+  + SD+ P +V+ AV  +  R+ +V G D +S EA ++AT+ F
Sbjct: 413  NIVRLMETSKKLFAVEDFQRSDLRPQDVIPAVQAMLNRMTIVRGNDDISKEADRSATILF 472

Query: 1028 NILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQ 1087
               +RS  A KR+  + RL + AFE V+GE+E+R+ ++ V+PGEM+G +AAQSIGEPATQ
Sbjct: 473  KAQIRSRLAFKRIACQQRLNKMAFEHVLGELEARWDRAFVSPGEMVGVIAAQSIGEPATQ 532

Query: 1088 MTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCAL 1147
            MTLNTFH+AGVS+KNVTLGVPRL+EI+N+A+ IKTPS+ V+L    N+++E AK ++  +
Sbjct: 533  MTLNTFHFAGVSSKNVTLGVPRLKEILNLAQNIKTPSMVVYLSGEDNASQEAAKALRSTV 592

Query: 1148 EYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI-APEKISPWLLRIELNR 1206
            E+TTLRSVT  TE++YDP+   T I +D++ V+SYY +PDE     E  S WLLR+ L+R
Sbjct: 593  EHTTLRSVTAVTEIYYDPEITSTNIPDDLDMVESYYLIPDESHDKTEDQSRWLLRLTLDR 652

Query: 1207 EMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAED 1266
            + ++DK+L++  VA +I +E+ +DL  IF+D+NA++ I+RIR M+    K E  ++  ED
Sbjct: 653  QKLLDKELTVEDVARRIKEEYPNDLAVIFSDNNAEEQIIRIRPMHAGNDKDEDGEKKIED 712

Query: 1267 DVFLKKIESNMLTEMALRGVN--------------------LLA---------------- 1290
            DV LK++E+++L  ++LRGV                     LLA                
Sbjct: 713  DVMLKRLETHLLDTLSLRGVKGIERAFLNKETKLIETDDGALLAAKADERCSEWYLDTSG 772

Query: 1291 -----VMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAI 1345
                 V+  + VD+ RT +NHL +I+EV GIEA R AL+ EL  V++FDGSYVN+RHLA+
Sbjct: 773  TALRQVLAVDGVDSNRTYTNHLWQIVEVFGIEAARAALVRELTQVLAFDGSYVNHRHLAL 832

Query: 1346 LCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIML 1405
            LCD MTYRG + A+TRHGINR DTG +MRCSFEETV+ILL+AA   E D  RG++EN+ML
Sbjct: 833  LCDVMTYRGTISAVTRHGINRADTGALMRCSFEETVEILLEAAAVGELDDCRGISENVML 892

Query: 1406 GQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSG---TPYHDG--M 1460
            GQ+AP+GTG   + L+ +ML+  I     +   GL  GM P +   +G   TPY  G  M
Sbjct: 893  GQMAPMGTGHFDVLLDPKMLETVIS---DNSRMGLMPGM-PVKGGEAGGAATPYDSGSPM 948

Query: 1461 MSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS----------------SPGYSPSSPG 1504
               GY+      LS      FSP VG  + SPT                    YS +SPG
Sbjct: 949  ADSGYM-----SLSSPAAGNFSPIVGAGSDSPTGFGTEYGGSGGFGGIGSVSHYSGASPG 1003

Query: 1505 ----------YSPSSPGYSPTSPGYSPTSP--GYSPTSPGYSPTSPTYSPSSPGYSPTSP 1552
                       SP S GY     GYSP+SP  GYSPTSP     +  Y  +SP +SP+SP
Sbjct: 1004 RPTSPFSTSPTSPFSSGYG----GYSPSSPNAGYSPTSPLIDGAAGRYGATSPQFSPSSP 1059

Query: 1553 AYSPTSPSYSPTSPSYSPTSPSYSPTSPS-----------YSPTSPSY--SPTSPSYSPT 1599
            ++SPTSP   PTSP+    SP+YSPTSPS           YSPTSP+   SPTSPSYSP 
Sbjct: 1060 SFSPTSPMLRPTSPA----SPNYSPTSPSYSPASPSSPRHYSPTSPAQYASPTSPSYSPA 1115

Query: 1600 SPSYSPTSP---AYSPTSPAYSPTSPAYSPTSPS-YSPTSPSYSPT 1641
            SP+YSP SP      PTSP+YSP SP +SPTSP+ YSPTSPS+  T
Sbjct: 1116 SPNYSPASPNLHGAGPTSPSYSPASPTWSPTSPAQYSPTSPSFQQT 1161



 Score = 59.3 bits (142), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 77/144 (53%), Gaps = 35/144 (24%)

Query: 1672 GYSPTSPS--YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSP 1729
            GYSP+SP+  YSPTSP     +  Y   S ++SPS      +  +    P SP SPNYSP
Sbjct: 1023 GYSPSSPNAGYSPTSPLIDGAAGRYGATSPQFSPSSPSFSPTSPM--LRPTSPASPNYSP 1080

Query: 1730 TSSS-----------YSPTSPSY--SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGY 1776
            TS S           YSPTSP+   SP+SP+YSP+SP        +YSP+SP      G 
Sbjct: 1081 TSPSYSPASPSSPRHYSPTSPAQYASPTSPSYSPASP--------NYSPASPNLH---GA 1129

Query: 1777 SPSAPGYSPS-------STSQYTP 1793
             P++P YSP+       S +QY+P
Sbjct: 1130 GPTSPSYSPASPTWSPTSPAQYSP 1153


>gi|397135864|gb|AFO11427.1| RNA polymerase I, partial [Kodamaea ohmeri]
          Length = 870

 Score = 1008 bits (2606), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/883 (58%), Positives = 646/883 (73%), Gaps = 24/883 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN D+ + PE    ++ LT   +L VLK +S EDC  +G N  YARP+WM++ VLP+PPP
Sbjct: 2    KNFDESEQPE----RRLLTPSEILNVLKHVSPEDCHKMGFNEDYARPEWMLITVLPVPPP 57

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT +LA +++ N N+++ E +G+PAH+I+EF  LLQFH+ATY 
Sbjct: 58   PVRPSIAFNDTARGEDDLTFKLADVLKANINVQKLEMDGSPAHVIAEFEALLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  L+YPE VTPYNI RL E V  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 178  GVPISIARTLSYPEIVTPYNIHRLTEFVRNGPNEHPG---AKYVIRDTGDRIDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFR+NLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRMNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD FI
Sbjct: 295  FDGDEMNLHVPQSPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MNI  W  D+DG +P P I+KP+PLW+GKQ+ +L IPK I+L        D  K 
Sbjct: 355  EYDQVMNICYWIPDWDGVIPPPAIIKPKPLWSGKQILSLAIPKGIHL-------QDGVKD 407

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  D+ + I  GE++ G + KKT+G S G LIH +  E GP    K     Q LVNYW
Sbjct: 408  MLSPNDSGMLIVDGEIMFGVVLKKTVGASAGGLIHTVMREKGPYECAKLFSSIQKLVNYW 467

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIAD+ TM+ + +TI +AK  V  +I  AQ   LEPEPG T+ ESFE+
Sbjct: 468  LLHNGFSIGIGDTIADSATMKNVTETIQEAKEKVLEIISDAQQNRLEPEPGMTLRESFEH 527

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V+++LN ARD AG SA+ +L + NN+K MVT+GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 528  NVSRILNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIP 587

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DRTLPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 588  FGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 647

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLGD++QF+YGEDG+D   +E Q+LD+L    + F++ 
Sbjct: 648  IQRRLVKALEDIMVHYDGTTRNSLGDIVQFIYGEDGLDGTQVEKQSLDTLPGSDAAFERR 707

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            +R ++ +   + +  L E   ++K   +L+ V D E  +L  DR  L      +GD SWP
Sbjct: 708  YRIDVLDPTKSISESLLESGKEIKGDVKLQKVLDEEYDQLLEDRRFLREVCFPNGDLSWP 767

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVNL+R++ NAQ+ F     + SD+   E++  V +L E+L V+ G  PL  EAQ NAT
Sbjct: 768  LPVNLRRIVQNAQQIFHNGRHKASDLRLDEIIRGVQQLCEKLLVIRGSTPLMKEAQDNAT 827

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L F  LLRS  AS+RV++E +L + +FEWVIGEIES+F +SLV
Sbjct: 828  LLFKCLLRSRLASRRVIEEFKLNKASFEWVIGEIESQFQKSLV 870


>gi|119643711|gb|ABL85584.1| RNA polymerase II largest subunit [Vulpicida pinastri]
          Length = 996

 Score = 1007 bits (2604), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 522/977 (53%), Positives = 678/977 (69%), Gaps = 43/977 (4%)

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEID--VPGQDGEEPLKKNKGGCGAQQPKL 178
            F  A++ R+PK R   +   CK K  CE    +D   P    +EP K + GGCG  QP++
Sbjct: 41   FADAMRRRDPKKRFDSVWRLCKPKMICETTMALDDDAPSDKAKEP-KHDHGGCGNIQPEV 99

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              EG+K+   +KAQ+   +++ Q PE    K+ +T +  L + + IS +D + +GL+  Y
Sbjct: 100  RREGLKLTGTWKAQKGDEENEGQQPE----KKPITPQMALNIFRHISADDIKRMGLSNDY 155

Query: 239  ARPDWMILQVLPIPPPPV------------RPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
            ARP+WMI+ VLP+PPPPV            R  DDLT++L  IIR N N+RR E  G+PA
Sbjct: 156  ARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPA 215

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            H+++EF QLLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVD
Sbjct: 216  HVVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVD 275

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP +++D++GVP SIA  LTYPETVTPYNI++L +LV+ GP+  PG   AK
Sbjct: 276  FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG---AK 332

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            Y+IRD G+R+DLR+ K++ +  L+ G+KVERH+ DGD+++F      HK S+MGH +++M
Sbjct: 333  YVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFXXXXXXHKESMMGHSVRVM 392

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            PYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGI
Sbjct: 393  PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAEINQLCMVPLNIVSPQRNGPLMGI 452

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDTL G  K+ +RD F+ K+  MNIL+W  D+DG +PQP I+KP  +WTGKQ+ +L+IP
Sbjct: 453  VQDTLCGIYKMCRRDVFLTKEQVMNILLWVPDWDGVIPQPAIVKPLAMWTGKQILSLVIP 512

Query: 587  KQINLFRTA--AWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
              +NL R +   +   ND G+L +G        GEL+ G L KK +G S G +IH+++ E
Sbjct: 513  TGLNLLRGSEEGFSPLNDDGLLISG--------GELMYGLLNKKVVGASGGGVIHIVFNE 564

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
             GP+AA  F    Q +VNYWLL N FSIGIGDTI D  T+  I   +   K  V  +   
Sbjct: 565  KGPEAAMTFFNGAQTVVNYWLLHNGFSIGIGDTIPDRDTIAQIERAVIAQKEEVTAITAS 624

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
            A    LE  PG  + E+FE+KV++ LN ARD+AG+  +KSL + NN   M  +GSKGS I
Sbjct: 625  ATANELESLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMARSGSKGSTI 684

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKDDY PESRGFVENSYLRGLTP EFFFH
Sbjct: 685  NISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFH 744

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M KYDGTVRNSLGD++QF+YGEDG+D V
Sbjct: 745  AMAGREGLIDTAVKTAETGYIQRRLVKALEDVMAKYDGTVRNSLGDIVQFVYGEDGLDGV 804

Query: 885  WIESQTLDSLKMKKSEFDKAFRFE-MD---EENWNPNY--MLQEYIDDLKTIKELRDVFD 938
             IE Q +D +     +F++ FR + MD   E + +P +  +  E I D++T K L    D
Sbjct: 805  HIEQQRVDIIACSTKQFERKFRVDLMDSKPETSISPEFLELANEMIGDVETQKHL----D 860

Query: 939  AEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
             E ++LE DR +L          +  LP+N+ R++  A+ TFK+     S++HP EV+  
Sbjct: 861  DEYRQLEKDRAELRKN-RQDDTENLQLPLNVIRILDTAKTTFKIKNGARSNLHPAEVIPQ 919

Query: 999  VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            V  L +RL VV G D LS EAQ NATL F I LRS  A KR++ E+ L + AF+ V+G+I
Sbjct: 920  VHDLLDRLVVVRGTDKLSEEAQHNATLLFKIQLRSRLAFKRLVMENSLNKLAFQHVLGQI 979

Query: 1059 ESRFLQSLVAPGEMIGC 1075
            ESRF ++ V PGEM+G 
Sbjct: 980  ESRFCRAAVNPGEMVGV 996


>gi|397135804|gb|AFO11397.1| RNA polymerase I, partial [Cyberlindnera americana]
          Length = 870

 Score = 1006 bits (2600), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/882 (57%), Positives = 649/882 (73%), Gaps = 23/882 (2%)

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
            N ++ + PE    ++ LT   +L V K IS EDC+ LG +  YARP+W+I+ VLP+PPPP
Sbjct: 2    NAEEGEQPE----RRLLTPSEILNVFKHISKEDCRKLGFHEDYARPEWLIISVLPVPPPP 57

Query: 256  V----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
            V          R  DDLT++L+ I++ N N+++ E +G+P H+I+EF  LLQFH+ATY D
Sbjct: 58   VRPSISFNDTQRGEDDLTYKLSDIMKANINVQKLEMDGSPQHVINEFEALLQFHVATYMD 117

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            N++ GQP+A Q+SGRPIKSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP + +DQ+G
Sbjct: 118  NDIAGQPQALQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVG 177

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP SIA  LTYPETVTPYNI++L ELV  GP+  PG   AKY+IRD G R+DLRY K++ 
Sbjct: 178  VPKSIARTLTYPETVTPYNIQKLTELVRNGPNEHPG---AKYVIRDTGDRIDLRYNKRAG 234

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
            D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADF
Sbjct: 235  DIVLQYGWKVERHLMDNDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNADF 294

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS ETRAE++ +  VP  IVSPQSN+P MGIVQDTL G RK+T RD+FIE
Sbjct: 295  DGDEMNLHVPQSEETRAELMNICAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFIE 354

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGI 605
             D  MNIL W  ++DG +P PTILKP+PLWTGKQ+ ++ IPK I+L R      D    +
Sbjct: 355  YDQMMNILYWIPEWDGVIPAPTILKPKPLWTGKQMLSMTIPKGIHLQR-----FDEGTTL 409

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
            L+  D  + +  G++L G + KKT+G + G LIH +  E GP A     G+ Q +VN+WL
Sbjct: 410  LSPNDNGMLVIDGQILFGVVDKKTVGATNGGLIHTVMREKGPRACADLFGNIQKVVNFWL 469

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGDTIADA TM+ I + I+ AK  V+ +  +AQ   L  + G T+ ESFE+ 
Sbjct: 470  LHNGFSIGIGDTIADAGTMKEITEAIAIAKEKVEEVTLEAQQNKLTAKHGMTLRESFEDN 529

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            V + LN ARD+AG SA+ +L   NN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI F
Sbjct: 530  VIRYLNEARDKAGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAF 589

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF DRTLPHF+KDDY PES+GFVENSYLRGLTPQEF+FHAMGGREGLIDTAVKT+ETGYI
Sbjct: 590  GFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYI 649

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRLVKA+EDIMV YDGT RNS+G++IQF+YGEDG+D+  +E QT+D+L  + + F+K +
Sbjct: 650  QRRLVKALEDIMVHYDGTTRNSMGNIIQFIYGEDGLDAGHVEKQTIDTLPGEDAAFEKRY 709

Query: 906  RFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL 965
            R ++  E       L E   D+    EL+ + D E  +L  DR  L  ++   G+ +WPL
Sbjct: 710  RIDLMSEKSTIKPSLLESGRDIIGNTELQTILDEEYNQLLEDRVML-RKVFVDGEHNWPL 768

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
            P N++R+I N+Q+ F VD  + SD+   E++  V  L ++L V+ GE PL  EA++NAT 
Sbjct: 769  PANIRRIIQNSQQIFHVDRSKASDLTLDEIIRTVQDLSKKLYVLRGETPLIQEARENATT 828

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
             F  LLRS  AS+RV++E+RL R AF WVIGEIE++F +++V
Sbjct: 829  LFQCLLRSRLASRRVIEEYRLNRTAFNWVIGEIEAQFHRAVV 870


>gi|397135820|gb|AFO11405.1| RNA polymerase I, partial [Saccharomycopsis capsularis]
          Length = 871

 Score = 1005 bits (2599), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/887 (57%), Positives = 648/887 (73%), Gaps = 29/887 (3%)

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
            K ++D +  PE    K+ LT   +L V K ISDED QLLG N  YARP+W++L VLP+PP
Sbjct: 1    KNSEDSDSQPE----KRLLTPSEILNVFKHISDEDAQLLGFNIDYARPEWLVLTVLPVPP 56

Query: 254  ----------PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT++LA I++ N N+++ E +G+PAH+I+EF  LLQ+H+ATY
Sbjct: 57   PPVRPSIAFNETARGEDDLTYKLAEILKANINVQKLEMDGSPAHVITEFESLLQYHVATY 116

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ
Sbjct: 117  MDNDIAGQPVALQKSGRPIKSIRARLKGKEGRVRGNLMGKRVDFSARTVISGDPNLDLDQ 176

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPE VTPYNI RL E V  GP+  PG   AKY+IRD G R+DLRY K+
Sbjct: 177  VGVPRSIARTLTYPEIVTPYNIHRLTEYVRNGPNEHPG---AKYVIRDTGDRIDLRYHKR 233

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            + D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MP+STFR+NLSVTSPYNA
Sbjct: 234  AGDIQLQYGWKVERHLIDEDPVLFNRQPSLHKMSMMAHRVKVMPFSTFRINLSVTSPYNA 293

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETR+E+  L  VP  I+SPQSN+PVMGIVQDTL G RK+T +D F
Sbjct: 294  DFDGDEMNLHVPQSHETRSELKNLAAVPLQIISPQSNKPVMGIVQDTLCGVRKMTLKDIF 353

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR---TAAWHAD 600
            IE D  MNI  W +D++G VPQPTILKP+PLWTGKQV ++ IP+ INL R      + + 
Sbjct: 354  IEYDQVMNICYWIKDWNGIVPQPTILKPKPLWTGKQVLSMGIPEGINLIRFEEKTTYLSP 413

Query: 601  NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
             D G+L        I  GE++ G + KKT+G+S G LIH ++ E G     +  G+ Q +
Sbjct: 414  QDDGML--------IVNGEIMFGVVNKKTVGSSAGGLIHTVFREKGHKVCAQLFGNIQKI 465

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            VNYWLL N FSIGIGDTIAD  TM  I  TI++AK  V+ +I  A    L+PEPG T+ E
Sbjct: 466  VNYWLLHNGFSIGIGDTIADKTTMTRITTTINEAKQKVQEVILDAHANRLQPEPGMTLRE 525

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FE  V Q+LN ARD+ G  ++KSL +SNN+K MV +GSKGSFINISQM+ACVGQQ VEG
Sbjct: 526  AFEANVAQLLNKARDDVGKYSEKSLKDSNNVKQMVISGSKGSFINISQMSACVGQQMVEG 585

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIPFGF DRTLPHFTKDD+ PES+GF+ENSYLRGLTPQEFFFHAM GREGLIDTAVKT+
Sbjct: 586  KRIPFGFADRTLPHFTKDDFSPESKGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTA 645

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRLVKA+EDI V YDGTVRNS G V+QF+YGEDG+D   +ESQ LDSL   +  
Sbjct: 646  ETGYIQRRLVKALEDITVHYDGTVRNSTGTVLQFIYGEDGLDGTQVESQPLDSLPASEET 705

Query: 901  FDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGD 960
            F+  ++ ++ + +      L EY DD++   EL+++ D E ++L  DR  L  E+  +G+
Sbjct: 706  FENRYKIDLMDSSKMIKPSLIEYGDDIRGDAELQNMLDEEYEQLRKDRLFL-REVFPTGE 764

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
              WPLPVNL+R++ N+Q+ F+VD  + SD+    ++  V +L ++L V+ GE  L  EAQ
Sbjct: 765  HKWPLPVNLRRVVQNSQQIFRVDRNKASDLPLDHIILKVRELCDKLTVIRGEGELVTEAQ 824

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            +NATL F  L+RS  AS+RV++E RL ++AF WVIG++E  F +S+V
Sbjct: 825  ENATLLFQCLIRSRLASRRVIEEFRLNKDAFNWVIGKVEELFQRSVV 871


>gi|397135800|gb|AFO11395.1| RNA polymerase I, partial [Barnettozyma populi]
          Length = 871

 Score = 1005 bits (2599), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/883 (57%), Positives = 649/883 (73%), Gaps = 23/883 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            K+ D+ + PE    K+ LT   +L V K IS EDC  LG +  YARP+W+I+ VLP+PPP
Sbjct: 2    KDLDENEQPE----KRLLTPSEILNVFKHISPEDCVKLGFHNDYARPEWLIISVLPVPPP 57

Query: 255  PV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
            PV          R  DDLT++L+ I++ N N+++ E +G+P H+I+EF  LLQFH+ATY 
Sbjct: 58   PVRPSISFNDTQRGEDDLTYKLSDIMKANINVQKLEMDGSPQHVINEFESLLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q+SGRPIKSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP + +DQ+
Sbjct: 118  DNDIAGQPQALQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPETVTPYNI++L ELV  GP+  PG   AKY+IRD+G RLDLRY K++
Sbjct: 178  GVPKSIARTLTYPETVTPYNIQKLTELVRNGPNEHPG---AKYVIRDNGDRLDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIVLQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE++ +  VP  IVSPQSN+P MGIVQDTL G RK+T RD+FI
Sbjct: 295  FDGDEMNLHVPQSEETRAELMNIAAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MNIL W  ++DG +PQP ILKP+PLW+GKQ+ ++ IPK INL R      D    
Sbjct: 355  EYDQMMNILYWIPEWDGVIPQPAILKPKPLWSGKQMMSMTIPKGINLQR-----FDEGTT 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  D  + +  GE++ G + KKT+G + G LIH +  E G        G  Q +VN+W
Sbjct: 410  LLSPNDNGMLVINGEIMFGVVDKKTVGATNGGLIHTVMREKGSRQCADLFGSIQKVVNFW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIAD +TM+ I + I+ AK  V+ +  +AQ   L  + G T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADTETMKEITEAIAIAKEKVEEVTDEAQQNKLTAKHGMTLRESFED 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V + LN ARD+AG SA+ +L   NN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI 
Sbjct: 530  NVIRYLNEARDKAGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIA 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DRTLPHF KDDY P+S+GFVENSYLRGLTPQEF+FHAMGGREGLIDTAVKT+ETGY
Sbjct: 590  FGFGDRTLPHFAKDDYSPQSKGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLG++IQF+YGEDG+D+  +E QT+D++  + + F+K 
Sbjct: 650  IQRRLVKALEDIMVHYDGTTRNSLGNIIQFIYGEDGLDAGHVEKQTIDTIPGEDAAFEKR 709

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            +R ++  E  +    L E   ++    EL+ + D E  +L  DR +   ++   G+ +WP
Sbjct: 710  YRVDLVSEKTSIKPSLLETGREIIGNTELQVLLDEEYNQLLVDR-KFLRKVFVDGEHNWP 768

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVN++R+I NAQK F +D  + SD+   E+VE V  L ++L V+ GE+PL  EAQ NAT
Sbjct: 769  LPVNIRRVIQNAQKIFHIDGNKASDLTLSEIVEGVQSLSKKLLVLRGENPLIQEAQDNAT 828

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
              F  LLRS   ++RV++E+RL R AF+WV+GEIE++F +S+V
Sbjct: 829  TLFQCLLRSRLTTRRVIEEYRLNRTAFKWVLGEIEAQFQRSVV 871


>gi|397135866|gb|AFO11428.1| RNA polymerase I, partial [Aciculoconidium aculeatum]
          Length = 872

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/884 (57%), Positives = 641/884 (72%), Gaps = 24/884 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN ++ + PE    ++ LT   +L VLK I  EDC  LG N  YARP+WM++ VLP+PPP
Sbjct: 2    KNFEENEQPE----RRLLTPSEILNVLKHIXPEDCHKLGFNEDYARPEWMLITVLPVPPP 57

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT +LA +++ N N+++ E +G+P H+ISEF  LLQFH+ATY 
Sbjct: 58   PVRPSIAFNDTARGEDDLTFKLADVLKANINVQKLEMDGSPQHVISEFEALLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  L+YPE VTPYNI RL E V  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 178  GVPISIARTLSYPEIVTPYNIHRLTEFVRNGPNEHPG---AKYVIRDTGDRIDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETR+E+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD +I
Sbjct: 295  FDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDIYI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MNI  W  ++DG +P P I+KP+PLWTGKQ+ ++ IPK I+L R      D  K 
Sbjct: 355  EYDQVMNICYWIPNWDGVIPPPAIVKPKPLWTGKQLLSMAIPKGIHLQRF-----DGGKD 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  DT + I  GE++ G + KKT+G + G LIH +  E GP    K     Q +VNYW
Sbjct: 410  MLSPNDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAKLFSSIQKVVNYW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIADA T +TI  TI +AK  V  +I  AQ    EPEPG T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADAGTXKTITSTIQEAKEKVXEIILDAQQNRXEPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V+++LN ARD AG SA+ +L + NN+K MVT+GSKGSFINISQM+A VGQQ VEGKRIP
Sbjct: 530  NVSRILNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSAXVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DRTLPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFSDRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLGD++QF+YGEDG+D   +E Q++D++    + F+K 
Sbjct: 650  IQRRLVKALEDIMVHYDGTTRNSLGDIVQFVYGEDGIDGTQVEKQSVDTIPGSDASFEKR 709

Query: 905  FRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
            +R + +D     P   L E   ++K   +++ V D E  +L  DR  L      +GDSSW
Sbjct: 710  YRIDVLDPSKSIPEASL-ESGKEIKGDVKVQKVLDEEYNQLLDDRQYLREVCFPNGDSSW 768

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNA 1023
            PLPVNL+R++ NAQ+ F     + SD+   E+V  V +L  +L V+ G   L  EAQ+NA
Sbjct: 769  PLPVNLRRIVQNAQQIFHNGRHKASDLRLEEIVHGVQQLCTKLLVIRGSTALMKEAQENA 828

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            TL F  LLRS  A++RV++E +L R +FEWV+GE+E++F +S+V
Sbjct: 829  TLLFQCLLRSRLAARRVIEEFKLNRASFEWVVGEVEAQFQKSIV 872


>gi|397135886|gb|AFO11438.1| RNA polymerase I, partial [Kurtzmaniella cleridarum]
          Length = 872

 Score = 1004 bits (2597), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/884 (57%), Positives = 648/884 (73%), Gaps = 23/884 (2%)

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
            K+ D+ EQ PE    ++ LT   +L V K IS EDCQ LG N  YARP+WM++ VLP+PP
Sbjct: 2    KQFDENEQ-PE----RRLLTPLEILSVFKHISVEDCQRLGFNEDYARPEWMLITVLPVPP 56

Query: 254  P----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
            P            R  DDLT +LA +++ N N++R E +G+P H+I+EF  LLQFH+ATY
Sbjct: 57   PPVRPSIAFNDTARGEDDLTFKLADVLKANINVQRLEMDGSPQHVIAEFEALLQFHVATY 116

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ
Sbjct: 117  MDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQ 176

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  L+YPE VTPYNI +L E V  GP+  PG   AKY+IRD G R+DLRY K+
Sbjct: 177  VGVPISIARTLSYPEVVTPYNIHKLTEYVRNGPNDHPG---AKYVIRDTGDRIDLRYNKR 233

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            + D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNA
Sbjct: 234  AGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNA 293

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQ  ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD F
Sbjct: 294  DFDGDEMNLHVPQLPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNF 353

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            IE D  MN+L W  ++DG +P P I+KP+PLWTGKQ+ ++ IPK I++ R      D+ K
Sbjct: 354  IEFDQVMNMLYWIPNWDGVIPPPAIVKPKPLWTGKQLLSMAIPKGIHIQRF-----DDGK 408

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
             +L+  D+ + I  GE++ G + KKT+G + G LIH +  E GP    +     Q +VNY
Sbjct: 409  DLLSPKDSGMLIVDGEIIFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSLIQKVVNY 468

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            WLL N FSIGIGDTIAD++TM T+  TI  AK  V+ +I  AQ   LEPEPG T+ ESFE
Sbjct: 469  WLLHNGFSIGIGDTIADSETMRTVTTTIDAAKKKVQEIILDAQRNKLEPEPGMTLRESFE 528

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
            + V++VLN ARD AG SA+ +L + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRI
Sbjct: 529  HNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRI 588

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
            PFGF DR+LPHFTKDDY PE +GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETG
Sbjct: 589  PFGFADRSLPHFTKDDYSPELKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 648

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E Q++D++    + F+K
Sbjct: 649  YIQRRLVKALEDIMVHYDGTTRNSLGDIIQFIYGEDGVDGTQVEKQSVDTIPGSDASFEK 708

Query: 904  AFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
             +R ++ + + + + +L E   +++   +L+ + D E  +L +DR  L     T+GD +W
Sbjct: 709  RYRIDVLDPSKSISELLLELGKEIRGDVKLQKILDEEYNQLLSDRRYLRDICFTNGDYNW 768

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNA 1023
            PLPVNL+R+I NAQ+ F        D+   E+V+ V +L ++L VV G   L  EAQ+NA
Sbjct: 769  PLPVNLRRVIQNAQQIFHSGRHVALDLRLDEIVKGVQELCQKLVVVRGSGRLLEEAQENA 828

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            TL F  L+RS  AS+RV++E +L + +FEWV GEIE++F +SLV
Sbjct: 829  TLLFKCLVRSRLASRRVIEEFKLNKISFEWVCGEIETQFARSLV 872


>gi|397135880|gb|AFO11435.1| RNA polymerase I, partial [Lodderomyces elongisporus]
          Length = 872

 Score = 1003 bits (2594), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/871 (58%), Positives = 645/871 (74%), Gaps = 19/871 (2%)

Query: 207  ERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP----------PV 256
            ER+Q LT   +L + K I+ EDC  LG N  YARP+WM++ VLP+PPP            
Sbjct: 11   ERRQ-LTPTEILQIFKHITSEDCYRLGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTA 69

Query: 257  RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQ 316
            R  DDLT +LA +I+ N N++R E +G+P H+ISEF  LLQFH+ATY DN++ GQP+A Q
Sbjct: 70   RGEDDLTFKLADVIKANMNVQRLEMDGSPQHVISEFEALLQFHVATYMDNDIAGQPQALQ 129

Query: 317  RSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTY 376
            ++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+GVP SIA  LTY
Sbjct: 130  KTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIAKTLTY 189

Query: 377  PETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVE 436
            PE VTPYNI +L ELV  GP   PG   AKY+IRD G R+DLRY K++ D  L+ G++VE
Sbjct: 190  PEIVTPYNIHKLTELVRNGPSEHPG---AKYVIRDTGDRIDLRYNKRAGDIALQYGWRVE 246

Query: 437  RHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 496
            RHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ
Sbjct: 247  RHLMDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 306

Query: 497  SFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW 556
            S ETR+E+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD FIE D  MN+  W 
Sbjct: 307  SPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMCYWI 366

Query: 557  EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIE 616
             ++DG +P P I+KP+PLW+GKQ+ +L IPK I+L R      D  + +L+A DT + I 
Sbjct: 367  PNWDGVIPPPAIIKPKPLWSGKQMLSLAIPKGIHLQR-----FDGGRDLLSAKDTGMLIV 421

Query: 617  KGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD 676
             GE++ G + KKT+G + G LIH +  E GP    +     Q +VN+WLL N FSIGIGD
Sbjct: 422  DGEIMFGVVDKKTVGATGGGLIHTVMREKGPTVCAQLFSSIQKVVNFWLLHNGFSIGIGD 481

Query: 677  TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDE 736
            TIADA TM+ I  TI +AK  V+ +I  AQ   LEPEPG T+ ESFE+ V++VLN ARD 
Sbjct: 482  TIADAATMKDITKTIQEAKAKVQEIILDAQHNKLEPEPGMTLRESFEHNVSRVLNQARDT 541

Query: 737  AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFT 796
            AG SA+ SL + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIPFGF DR+LPHFT
Sbjct: 542  AGRSAEMSLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPHFT 601

Query: 797  KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDI 856
            KDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+EDI
Sbjct: 602  KDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDI 661

Query: 857  MVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNP 916
            MV YDGT RNSLGD+IQF+YGEDG+D+  +E Q++D++      F++ +R ++ E+N + 
Sbjct: 662  MVHYDGTTRNSLGDIIQFIYGEDGIDATQVEKQSVDTIPGSDESFERRYRIDVLEKNASI 721

Query: 917  NYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNA 976
            +  L E  ++++   EL+ + D E  +L  DR  L   +  +GD SWPLPVNL+R+I NA
Sbjct: 722  STNLLESGEEIQGDVELQKILDEEYNQLLEDRKYLRDVVFPNGDFSWPLPVNLRRIIQNA 781

Query: 977  QKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFA 1036
            Q+ F     +PSD+   E+VE+V  L  +  VV G+ PL  EAQ+NATL F  L+RS  A
Sbjct: 782  QQIFHSGRDKPSDLRLDEIVESVRDLCTKFLVVRGDTPLMKEAQENATLLFQCLVRSRLA 841

Query: 1037 SKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            S+RV++E +L + +FEW +GEIE++F +S+V
Sbjct: 842  SRRVIEEFKLNKASFEWALGEIETQFQKSVV 872


>gi|397135900|gb|AFO11445.1| RNA polymerase I, partial [Scheffersomyces spartinae]
          Length = 872

 Score = 1003 bits (2593), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/869 (57%), Positives = 638/869 (73%), Gaps = 18/869 (2%)

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP----------PVRP 258
            ++ LT   +L V K IS  DC  LG N  YARP+WM++ VLP+PPP            R 
Sbjct: 12   RRLLTPSEILSVFKHISSVDCLRLGFNEDYARPEWMLITVLPVPPPPVRPSIAFNDTARG 71

Query: 259  SDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRS 318
             DDLT +LA +++ N N++R E +G+P H+ISEF  LLQFH+ATY DN++ GQP+A Q++
Sbjct: 72   EDDLTFKLADVLKANINVQRLEMDGSPQHVISEFEALLQFHVATYMDNDIAGQPQALQKT 131

Query: 319  GRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPE 378
            GRPIKSI +RLK K+GRIRGNLMGKRVDFSARTVI+ DP +++DQ+GVP SIA  L+YPE
Sbjct: 132  GRPIKSIRARLKGKDGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPISIARTLSYPE 191

Query: 379  TVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERH 438
             VTPYNI RL E V  GP+  PG   AKY+IRD G R+DLRY K++ D  L+ G++VERH
Sbjct: 192  IVTPYNIHRLTEYVRNGPNEHPG---AKYVIRDTGDRIDLRYNKRAGDIALQYGWRVERH 248

Query: 439  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
            L D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS 
Sbjct: 249  LMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSP 308

Query: 499  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
            ETR+E+ ++  VP  I+SPQSN+PVMGIVQDTL G RK+T RD FIE D  MN+L W  +
Sbjct: 309  ETRSELSQICAVPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNMLYWIPN 368

Query: 559  FDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKG 618
            +DG +P P ++KP+ LWTGKQ+ ++ IPK I+L R      D+ + +    D  + I  G
Sbjct: 369  WDGVIPPPAVMKPKQLWTGKQLLSMAIPKGIHLQR-----FDDGRDLSCPKDKGMLIVDG 423

Query: 619  ELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            E++ G + KKT+G + G LIH ++ E GP    +     Q +VN+WLL N FSIGIGDTI
Sbjct: 424  EIMFGVVDKKTVGATGGGLIHTVFREKGPQVCAQMFSAIQKVVNFWLLHNGFSIGIGDTI 483

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
            ADA+TM+TI  TI +AK+ V+ +I  AQ   LEPEPG T+ ESFE+ V++VLN ARD AG
Sbjct: 484  ADAETMKTITSTIREAKDKVQEIILDAQLNKLEPEPGMTLRESFEHNVSRVLNQARDTAG 543

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
             SA+ +L + NN+K MVT+GSKGSFINISQM+ACVGQQ VEGKRIPFGF DRTLPHFTKD
Sbjct: 544  RSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIPFGFGDRTLPHFTKD 603

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
            DY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRR++KA+EDIMV
Sbjct: 604  DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRIIKALEDIMV 663

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNY 918
             YDGT RNSLGD+IQF+YGEDGMD   +E Q++D++      F++ +R ++ +   + N 
Sbjct: 664  HYDGTTRNSLGDIIQFVYGEDGMDGTQVEKQSIDTIPGSDRAFERRYRIDLLDSENSINE 723

Query: 919  MLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQK 978
             L E   +++   EL++V D E  +L  DR  L      +GD +WPLPVN++R+I N+Q+
Sbjct: 724  SLLESGKEIRGDVELQEVLDEEYSQLLEDRKFLRDVCFPNGDYNWPLPVNIRRIIQNSQQ 783

Query: 979  TFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASK 1038
             F     + SD+   E+V  V  L  +L V+ G+ PL  EAQ NATL F  LLRS  AS+
Sbjct: 784  IFHSGRMKASDLRLDEIVNGVKDLCTKLLVIRGDTPLIKEAQANATLLFQSLLRSRLASR 843

Query: 1039 RVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            RV++E +L R +FEWV+GEIE++F +S+V
Sbjct: 844  RVIEEFKLNRTSFEWVMGEIEAQFQKSVV 872


>gi|397135872|gb|AFO11431.1| RNA polymerase I, partial [Metschnikowia bicuspidata]
          Length = 872

 Score = 1003 bits (2592), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/883 (56%), Positives = 645/883 (73%), Gaps = 22/883 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            K  D+ + PE    ++ L    +L V + IS EDCQ LG N  YARP+WM++ VLP+PPP
Sbjct: 2    KTYDENEQPE----RRLLNPLEILSVFRHISAEDCQKLGFNEDYARPEWMLITVLPVPPP 57

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT +LA I++ N N++R E +G+P H+ISEF  LLQFH+ATY 
Sbjct: 58   PVRPSIAFNDTARGEDDLTFKLADILKANINVQRLEIDGSPQHVISEFEALLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  L+YPE VTPYNI++L E V  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 178  GVPISIARTLSYPEVVTPYNIQKLTEYVRNGPNEHPG---AKYVIRDTGDRIDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD+FI
Sbjct: 295  FDGDEMNLHVPQSPETRAEMSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDSFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E +  MN+L W  ++DG +P P + KP+PLW+GKQ+ ++ IPK I+L R      D+ + 
Sbjct: 355  EYEQVMNMLYWIPNWDGVIPPPAVFKPKPLWSGKQLLSMAIPKGIHLQRF-----DDGRD 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  D  + +  GE++ G + KKT+G + G LIH +  E GP    +     Q +VNYW
Sbjct: 410  MLSPKDLGMLVVDGEIIFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQKVVNYW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIAD  TM  +  TI +AK  V+ +I  AQ   LEPEPG T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADKDTMRDVTTTIQEAKQKVQEIIMDAQQNKLEPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V+++LN ARD AG SA+ +L + NN+K MVT+GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  NVSRILNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DRTLPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFGDRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D+  +E Q++D++    + F+K 
Sbjct: 650  IQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDATSVEKQSVDTIPGSDASFEKR 709

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            +R ++ + + + +  L E    +K    ++ V D E  +L  DR  L   +  +GD +WP
Sbjct: 710  YRIDVLDPSKSISESLLESGKQIKGDVAVQKVLDEEYDQLLKDRKFLREVVFPNGDYNWP 769

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVNL+R+I NAQ+ F    ++ SD+   E+VE +  L  +L V+ G+  L  EAQ+NAT
Sbjct: 770  LPVNLRRIIQNAQQIFHSGRQKASDLRLEEIVEGIQSLCTKLLVLRGKTELIKEAQENAT 829

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L F  LLRS  A++RV++E +L + +FEWV GEIES+F +S+V
Sbjct: 830  LLFQCLLRSRLAARRVIEEFKLNKVSFEWVCGEIESQFQKSIV 872


>gi|397135798|gb|AFO11394.1| RNA polymerase I, partial [Starmera amethionina]
          Length = 870

 Score = 1001 bits (2589), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/883 (56%), Positives = 648/883 (73%), Gaps = 24/883 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            K D+ EQ PE    ++ L+   +L V + IS  DC  LG N +YARP+W+I+ VLP+PPP
Sbjct: 2    KEDENEQ-PE----RRVLSPSEILNVFRHISSSDCHKLGFNEEYARPEWLIISVLPVPPP 56

Query: 255  PV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
            PV          R  DDLT++L+ I++ N N+++ E +G+P H+I+EF  LLQFH+ATY 
Sbjct: 57   PVRPSISFNDTQRGEDDLTYKLSDIMKANINVQKLEMDGSPQHVINEFESLLQFHVATYM 116

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q+SGRPIKSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP + + Q+
Sbjct: 117  DNDIAGQPQALQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELGQV 176

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPETVTP+NI++L ELV  GP+  PG   AKYIIRD G R+DLRY K++
Sbjct: 177  GVPKSIARTLTYPETVTPFNIKKLTELVMNGPNEHPG---AKYIIRDTGDRIDLRYNKRA 233

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL DGD VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 234  GDIALQYGWKVERHLMDGDPVLFNRQPSLHKMSMMCHRVKVMPYSTFRLNLSVTSPYNAD 293

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+L +  VP  IVSPQSN+P MGIVQDTL G RK+T RD+FI
Sbjct: 294  FDGDEMNLHVPQSEETRAELLNICAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDSFI 353

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            + D  MNIL W +D+DG +PQPTILKPRPLWTGKQ+ ++ IPK I+L R      D    
Sbjct: 354  DYDQMMNILYWIKDWDGVIPQPTILKPRPLWTGKQMLSMAIPKGIHLQRF-----DEGTT 408

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +++  D  + I  G+++ G + KKT+G + G LIH +  E GP       G  Q +VN+W
Sbjct: 409  LISPKDNGMLIIDGKIIFGVVDKKTVGATNGGLIHTVMREKGPTECANLFGKLQKVVNFW 468

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIADA TM+ I D I+ AK  V  +  + Q   L  + G T+ ESFE+
Sbjct: 469  LLHNGFSIGIGDTIADASTMKEITDAIALAKVKVDEVTLEVQQNKLTAKHGMTLRESFED 528

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V + LN ARD+AG SA+ +L   NN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI 
Sbjct: 529  NVIRYLNEARDKAGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIA 588

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DRTLPHF KDDY PES+GFVENSYLRGLTPQEF+FHAMGGREGLIDTAVKT+ETGY
Sbjct: 589  FGFADRTLPHFAKDDYSPESKGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGY 648

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLG +IQF+YGEDG+D+  +E Q++D++  + + F+K 
Sbjct: 649  IQRRLVKALEDIMVHYDGTTRNSLGGIIQFVYGEDGLDAGHVEKQSIDTIPGEDAAFEKR 708

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            +R ++     + N  L E   D+    EL+   D E Q+L  DR +L  ++   G+ +WP
Sbjct: 709  YRVDLTNPKASINIQLLESGLDIFGNNELQQALDEEYQQLCRDR-ELLRKVFVDGEHNWP 767

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVN++R+I N+Q+ F +D  + S++   E+++ V +L  +L V+ G+  L  EAQ NAT
Sbjct: 768  LPVNIRRIIQNSQQAFHIDRSKASNLSLTEIIDGVKELNSKLLVIRGDTKLIKEAQVNAT 827

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
              F  L+RS  +++RV++E+RL R+AF WV+GEIE++F +++V
Sbjct: 828  TLFQCLVRSRLSTRRVIEEYRLNRDAFYWVLGEIEAQFQRAVV 870


>gi|111278789|gb|ABH09092.1| RNA polymerase II largest subunit [Endocarpon pallidulum]
          Length = 1010

 Score = 1001 bits (2587), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/1025 (50%), Positives = 689/1025 (67%), Gaps = 42/1025 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILA-DEDDHKFKQALKIRNPKNRLKKILDAC 141
            ++LA P++H GF+  V  ++ +VC NC KI A D      + AL +RNPK R + I    
Sbjct: 2    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVDVSSEDLRYALTVRNPKKRFEPIWRLS 61

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKK 195
            + +  C+     D P +D E+P  + +      GGCG  QP++   G+++ A+YK  RK 
Sbjct: 62   QKQNICQA----DSP-EDEEDPTARERSGKVGHGGCGNAQPQIRRSGLELWAQYKP-RKG 115

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
            +DD+E +PE    K  +   + L V + ++DE    LGLN  +ARP+WMILQ LP+PPPP
Sbjct: 116  DDDEETVPE----KSQIWPAQALEVFQHLTDETLDTLGLNLDFARPEWMILQSLPVPPPP 171

Query: 256  V-------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT 302
            V             R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+AT
Sbjct: 172  VRPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVAT 231

Query: 303  YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
            Y DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D
Sbjct: 232  YMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLD 291

Query: 363  QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK 422
            ++GVP SIA  LTYPETVT +NI +LK+LV  GP   PG   A+YIIR++ +R+DLRY K
Sbjct: 292  EVGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEAHPG---ARYIIRENNERIDLRYHK 348

Query: 423  KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 482
             +S   L+ G+KVERH+ DGD +LFNRQPSL        R+++MPYSTFRLNLSVT+PYN
Sbjct: 349  DTSQIALKTGWKVERHIMDGDVILFNRQPSLXXXXXXXXRVRVMPYSTFRLNLSVTTPYN 408

Query: 483  ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 542
            ADFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD 
Sbjct: 409  ADFDGDEMNLHVPQSEETRAELSQLCMVPLDIVSPQRNGPLMGIVQDTLCGIYKICRRDV 468

Query: 543  FIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN- 601
            F+ ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +   
Sbjct: 469  FLSREQVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMISMVLPPALNLVRIDGKASQPP 528

Query: 602  DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
             +    AGD+ + +  GEL+ G   KK++GT +  +IH I+ E G + A  F    Q ++
Sbjct: 529  IERFAPAGDSGLFVSDGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVI 588

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYW L N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+
Sbjct: 589  NYWFLHNGFSIGIGDTVPDRGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRET 648

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV+  LN ARDEAG++ + SL +SNN   M  AGSKGS INISQMTA VGQQ+VEGK
Sbjct: 649  FESKVSAALNGARDEAGTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGK 708

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 709  RIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 768

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F
Sbjct: 769  TGYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAF 828

Query: 902  DKAFRFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQLAT--EIA 956
            +K FR ++ E       + Q+ ++    I    +++ +FD E ++L  DR  L +  + A
Sbjct: 829  EKMFRVDLMEPK---KLVWQDRLEQASEIHGDVDVQKLFDEEYEQLMEDRRFLRSIKKAA 885

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            TS D   PLP+N++R++  A+ TFK+    PSD+HP   +  V +L +RL +V G+DP+S
Sbjct: 886  TSADEMMPLPMNVQRILNQARTTFKIQSGAPSDLHPTYAIPKVQQLLDRLVIVRGDDPIS 945

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
            +EAQ NATL    LLRS  A KR++ E+ L R AF+ V+G IE+RF+++   PGEM+G +
Sbjct: 946  LEAQNNATLLIKALLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKAAANPGEMVGVL 1005

Query: 1077 AAQSI 1081
            AAQSI
Sbjct: 1006 AAQSI 1010


>gi|407852687|gb|EKG06051.1| RNA polymerase IIA largest subunit, putative, partial [Trypanosoma
            cruzi]
          Length = 1588

 Score = 1001 bits (2587), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 623/1612 (38%), Positives = 894/1612 (55%), Gaps = 165/1612 (10%)

Query: 170  GCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDC 229
            GCGA QP++     + +  Y     K   +EQ            A+    VL R+SDED 
Sbjct: 19   GCGATQPRIG----RYLGIYPTLIIKATLEEQ-------DMVWHADTARQVLDRVSDEDA 67

Query: 230  QLLGLNPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQE 280
            +++G +     P  ++L VLP+PPP VRP+         D+LTHQ+  I++ N  LR+ +
Sbjct: 68   RVMGFDALRCHPRDLVLTVLPVPPPQVRPTISFGSLKSDDELTHQIMSIVKRNNQLRKDK 127

Query: 281  RNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 340
             +     +    A LLQ H+A YF+N             + +KS+  RLK K GR+RGNL
Sbjct: 128  ESDVQVAVDRSRA-LLQEHVAAYFNNASMYYKPTMVNDTKKLKSLTERLKGKYGRLRGNL 186

Query: 341  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 400
            MGKRVDFSARTVIT DP I++D++GVP+SIA+ LT+PE V+  N +RL E V    +P  
Sbjct: 187  MGKRVDFSARTVITGDPNIDVDEVGVPFSIAMTLTFPERVSAVNKKRLTEFVRRPVYP-- 244

Query: 401  GKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 460
                A YI   +G    L   +  S   L +G  VERHL +GD VLFNRQP+LH+MS+MG
Sbjct: 245  ---SANYIHHPNGTTTKLALRRDRSKVTLNIGDVVERHLINGDVVLFNRQPTLHRMSMMG 301

Query: 461  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
            HR++++ Y+TFRLNLS T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  +
Sbjct: 302  HRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKS 361

Query: 521  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQV 580
             P MGIVQD+LLG  ++T +DTF++K    ++ +W + +  ++P P +L+PRPLWTGKQV
Sbjct: 362  APCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLW--QLPVPAVLRPRPLWTGKQV 419

Query: 581  FNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHV 640
            F+LI+P ++N   T       ++      D+ + I +G+LL G + K  +G + GSLIHV
Sbjct: 420  FSLILP-EVNHPATP-----QERPPFPHNDSSIMIRRGQLLCGPITKSIVGAAPGSLIHV 473

Query: 641  IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKN 700
            I+ E G D   +F+   Q +  ++L+   FS+G+ DT+ADA T+  +N+ + K + NV+ 
Sbjct: 474  IFNERGSDEVARFINGVQRITTFYLINFGFSVGVQDTVADADTLRQMNEVLVKTRENVEK 533

Query: 701  LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760
            +   A +++L  + G T+++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSK
Sbjct: 534  IGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSK 593

Query: 761  GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 820
            G+ +NI Q+   VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P E
Sbjct: 594  GTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHE 653

Query: 821  FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 880
            FFFH M GREGLIDTAVKTS+TGY+QR+L+KA+ED+   YDGTVRN+  ++IQF+YGEDG
Sbjct: 654  FFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANQELIQFMYGEDG 713

Query: 881  MDSVWIESQTLDSLKMKKS-EFDKAFRFEMDEENWNPNYMLQEYID---------DLKTI 930
            +D   IE   L  L  + + E +  +++E DE       +   Y+D         D + +
Sbjct: 714  LDGARIEGGQLFPLPFRDNKEMESTYKYEYDETGAFNEKVGGAYMDPHVKKMLRADPENV 773

Query: 931  KELRDVFDAEVQKLEADR--YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPS 988
            ++L+  FD    +L ADR   +   ++         LPVN+ RLI NA+ T      + S
Sbjct: 774  RKLQSEFD----QLMADRDWARQMMDLEEREKLKLNLPVNIGRLIQNARSTMG-KRSQVS 828

Query: 989  DMHPMEVVEAVDKLQE-RLKVVP----GEDP-----LSVEAQKNATLFFNILLRSTFASK 1038
            ++ P+ +++ V KLQE  LK+ P    G D      LS +  +NA   F++ LR   ASK
Sbjct: 829  NLSPVTIIDHVRKLQEDMLKLFPCYHKGVDGRIHNLLSRQRIENALTLFSVQLRQLLASK 888

Query: 1039 RVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1098
            RVL+E++L  +AFE+++ EI +++LQSLV+PGE IG +AAQS GEPATQMTLNTFH AG+
Sbjct: 889  RVLREYKLNDKAFEYLLKEIRTKYLQSLVSPGENIGAIAAQSCGEPATQMTLNTFHNAGI 948

Query: 1099 SAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEA 1158
            S+KNVTLGVPRL E++NV++  K  S++V L P  +  K  A+  Q  +EY TL SVT+ 
Sbjct: 949  SSKNVTLGVPRLLELLNVSRHQKHASMNVSLYPPWDK-KRTAQQAQHLIEYCTLESVTKR 1007

Query: 1159 TEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKI------SPWLLRIELNREMMVDK 1212
             +  YDPDP  T++E D   ++  + + DE     ++      SPW+ R+EL+ +M VDK
Sbjct: 1008 IQFIYDPDPRETVVEADRAILELEWSVMDESDERARLQEVENGSPWIARLELDADMFVDK 1067

Query: 1213 KLSMAAVAEKINQEFDDDL--TCIFND-------------DNAD----------KLILRI 1247
             L+M  V + I +  D  +  T + ND             D  D          +L+ R+
Sbjct: 1068 ALNMKDVKQAILRVDDGYVIETGMANDTKERTIRMRPKKNDGVDSIPRLKHAIPELLARV 1127

Query: 1248 R----------IMNDEAP----------KGELNDESAEDDVFLKKIESNMLTEMALRGVN 1287
                       ++ D             KGE       D   L++    ++ E   +G N
Sbjct: 1128 HLRGIPGVRKALLKDRTTFTVDPATGKMKGEKTWLIDTDGTALRRAFIGIVDE---KGNN 1184

Query: 1288 LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILC 1347
            ++        +A RT+SN + E+  +LGIEA R  +L ELR      G  +NYRH  +L 
Sbjct: 1185 II--------NATRTSSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYRHYTVLV 1236

Query: 1348 DTMTYRGHLMAITRHGINRND-TGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLG 1406
            DT+  RG+LMA++R GINR++ +GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG
Sbjct: 1237 DTICQRGYLMAVSRVGINRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVSANLVLG 1296

Query: 1407 QLAPIGTGDCSLYLNDEMLKNAI---ELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSP 1463
              A IGTG   L LN   L+ A+   +   P     +  G+   ++  S  PY       
Sbjct: 1297 NQARIGTGLFDLVLNMAALQQAVPQEDAVAPGKEVNVYHGLASTQNLPSSMPYR------ 1350

Query: 1464 GYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG--YSP 1521
                          D + +P+V        +S  +     G S ++P  + T  G  +  
Sbjct: 1351 ------------AKDHEATPFVN------DASLFFREGVGGSSSAAPLTASTLYGGMHEA 1392

Query: 1522 TSPGYSPTSPGYSPTSPTYSPSSPG--YSPTSPA--YSPTS---PSYSPTSPSYSPTSPS 1574
            ++  +S   P           SS    YS  S A  Y+P S   PS  P S  YS  S  
Sbjct: 1393 SAVHFSQAYPAMGMLDQRVRASSVSQPYSVMSSASVYNPASMQVPSALPGSVDYSEASSF 1452

Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT 1634
            +  +S +     PS    +P  +     +   SPAY P+  +   T P Y     S S  
Sbjct: 1453 HIQSSMAMPSVPPSLQFEAPQ-AFGGGRFGGLSPAYVPSVMSSVATQP-YQCIGDSESQQ 1510

Query: 1635 SPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
            S SY PT SP+YS  +   S  + S +  S     +       S SY P SP
Sbjct: 1511 SASYVPTLSPAYSAYTARRSVVA-SRASASRVDQQSQQQKEDESASYLPKSP 1561



 Score =  153 bits (386), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 133/427 (31%), Positives = 189/427 (44%), Gaps = 58/427 (13%)

Query: 1297 VDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1356
            ++A RT+SN + E+  +LGIEA R  +L ELR      G  +NYRH  +L DT+  RG+L
Sbjct: 1186 INATRTSSNKVPEVCSLLGIEAARYKMLHELREAYLAYGLNINYRHYTVLVDTICQRGYL 1245

Query: 1357 MAITRHGINRND-TGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGD 1415
            MA++R GINR++ +GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG  A IGTG 
Sbjct: 1246 MAVSRVGINRSEMSGPLMRCSFEETVKVLMAAAAFGERDPVRGVSANLVLGNQARIGTGL 1305

Query: 1416 CSLYLNDEMLKNAI---ELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLR 1472
              L LN   L+ A+   +   P     +  G+   ++  S  PY                
Sbjct: 1306 FDLVLNMAALQQAVPQEDAVAPGKEVNVYHGLASTQNLPSSMPYR--------------- 1350

Query: 1473 LSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG--YSPTSPGYSPTS 1530
                 D + +P+V        +S  +     G S ++P  + T  G  +  ++  +S   
Sbjct: 1351 ---AKDHEATPFVN------DASLFFREGVGGSSSAAPLTASTLYGGMHEASAVHFSQAY 1401

Query: 1531 PGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTS---PSYSPTSPSYSPTSP 1587
            P           SS      S  YS  S     ++  Y+P S   PS  P S  YS  S 
Sbjct: 1402 PAMGMLDQRVRASS-----VSQPYSVMS-----SASVYNPASMQVPSALPGSVDYSEASS 1451

Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
             +  +S +     PS    +P  +     +   SPAY P+  S   T P        Y  
Sbjct: 1452 FHIQSSMAMPSVPPSLQFEAPQ-AFGGGRFGGLSPAYVPSVMSSVATQP--------YQC 1502

Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY 1707
               S S  S SY PT       SP YS  +   S  +   S +      Q  K   S +Y
Sbjct: 1503 IGDSESQQSASYVPT------LSPAYSAYTARRSVVASRASASRVDQQSQQQKEDESASY 1556

Query: 1708 SPSSPRL 1714
             P SP L
Sbjct: 1557 LPKSPGL 1563


>gi|397135842|gb|AFO11416.1| RNA polymerase I, partial [Vanderwaltozyma polyspora]
          Length = 871

 Score = 1000 bits (2585), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/878 (57%), Positives = 653/878 (74%), Gaps = 29/878 (3%)

Query: 204  EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------- 256
            EP +R   L+ E +L + K IS ED   LG N ++ARP+WM+L VLP+PPPPV       
Sbjct: 9    EPEQR--VLSTEEILNIFKHISSEDYIRLGFNEEFARPEWMLLTVLPVPPPPVRPSISFN 66

Query: 257  ---RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT +LA I++ N +L   E NGAP H I E   LLQFH+ATY DN++ GQP+
Sbjct: 67   ESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQ 126

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP + +DQ+GVP SIA  
Sbjct: 127  ALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKT 186

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD+G R+DLRY K++ D  L+ G+
Sbjct: 187  LTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDNGDRIDLRYSKRAGDIQLQYGW 243

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 244  KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G RK+T RD+FIE D  +N+L
Sbjct: 304  VPQSEETRAELSQLCAVPMQIVSPQSNKPCMGIVQDTLCGIRKLTLRDSFIEFDQVLNML 363

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLV 613
             W  D+DG +PQP ILKP+PLWTGKQ+ ++ IPK I+L R      D    +L+  D  +
Sbjct: 364  YWVPDWDGVIPQPAILKPKPLWTGKQILSIAIPKGIHLQR-----FDEGTTMLSPKDNGM 418

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
             +  G+++ G + KKT+G+S+G LIHV+  E GP    K  G+ Q +VN+WLL N FS G
Sbjct: 419  LVIDGQIVFGVVDKKTVGSSSGGLIHVVTREKGPQVCAKMFGNIQKVVNFWLLHNGFSTG 478

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGDTIAD +TM+ I +TI++AK  V+ + K+AQ   L  + G T+ ESFE+ V + LN A
Sbjct: 479  IGDTIADGETMKEITETIAEAKKKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEA 538

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RD+AG  A+ +L+++NN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI FGFVDRTLP
Sbjct: 539  RDKAGRLAEVNLNDTNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLP 598

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+
Sbjct: 599  HFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAL 658

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEE 912
            EDIMV YD T RNSLG+VIQF+YGEDG+D+ +IE Q++D++      F+K +R + M  E
Sbjct: 659  EDIMVHYDSTTRNSLGNVIQFVYGEDGIDASYIEKQSIDTIGGSNQAFEKRYRIDLMSPE 718

Query: 913  NWNPNYMLQ---EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNL 969
            +     +L+   E I D+K    ++ + D E ++L  DR +    +   G+ +WPLPVN+
Sbjct: 719  HSLDTTLLESGSEIIGDVK----IQSMLDEEYKQLVNDR-RFLRNVFIDGEQNWPLPVNI 773

Query: 970  KRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNI 1029
            +R++ NAQ+TF++D  +PSD+   +VV  V +L+ +L V+ G+  +  EAQ +A   F  
Sbjct: 774  RRIVQNAQQTFRIDHTKPSDLTIRDVVYGVKELESKLLVLRGKSKIIEEAQNDAITLFCC 833

Query: 1030 LLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            LLRS  A++RVL+E+RLT++AF+WV+  IES+FL+S+V
Sbjct: 834  LLRSRLAARRVLEEYRLTKQAFDWVLSNIESQFLRSIV 871


>gi|397135802|gb|AFO11396.1| RNA polymerase I, partial [Wickerhamomyces canadensis]
          Length = 871

 Score =  999 bits (2583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/886 (57%), Positives = 647/886 (73%), Gaps = 28/886 (3%)

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
            K  +D EQ PE    ++ LT   +L V K I+  DC  LG +  YARP+W+I+ VLP+PP
Sbjct: 2    KDLEDNEQ-PE----RRLLTPSEILNVFKHITPSDCHKLGFHEDYARPEWLIISVLPVPP 56

Query: 254  PPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
            PPV          R  DDLT++L+ I++ N N+++ E +G+P H+I+EF  LLQFH+ATY
Sbjct: 57   PPVXPSISFNDTQRGEDDLTYKLSDIMKANINVQKLEMDGSPQHVINEFESLLQFHVATY 116

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP+A Q+SGRPIKSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP + +DQ
Sbjct: 117  MDNDIAGQPQALQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQ 176

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVTPYNI++L ELV  GP+  PG   AKY+IRD+G R+DLRY K+
Sbjct: 177  VGVPKSIARTLTYPETVTPYNIQKLTELVRNGPNEHPG---AKYVIRDNGDRIDLRYNKR 233

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            + D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNA
Sbjct: 234  AGDVVLQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNA 293

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETRAE++ +  VP  IVSPQSN+P MGIVQDTL G RK+T RD F
Sbjct: 294  DFDGDEMNLHVPQSEETRAELMNICAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRDVF 353

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            IE D  MN L W  D++G +PQP ILKP+PLWTGKQ+ ++ IP  I+L R        D+
Sbjct: 354  IEYDQMMNTLYWIPDWNGVIPQPAILKPKPLWTGKQLLSVAIPDGIHLQRL-------DE 406

Query: 604  GILTAG--DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            G   A   D  + I  GE+L G + KKT+G + G LIH +  E GP A     G  Q +V
Sbjct: 407  GTTMASPKDNGMLIVDGEILFGVVDKKTVGATNGGLIHTVMREKGPRACADLFGKLQKVV 466

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            N+WLL N FSIGIGDTIADA TM+ I + I+ AK  V  +  +AQ   L  + G T+ ES
Sbjct: 467  NFWLLHNGFSIGIGDTIADASTMKEITEAIAIAKEKVDEVTLEAQQNKLTAKHGMTLRES 526

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+ V + LN ARD+AG SA+ +L   NN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGK
Sbjct: 527  FEDNVIRYLNEARDKAGRSAEVNLKGLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGK 586

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RI FGF DRTLPHF KDDY PES+GFVENSYLRGLTPQEF+FHAMGGREGLIDTAVKT+E
Sbjct: 587  RIAFGFADRTLPHFAKDDYSPESKGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAE 646

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+EDIMV YDGT RNS G++IQF+YGEDG+D+  +E QT+D+L  + S F
Sbjct: 647  TGYIQRRLVKALEDIMVHYDGTTRNSTGNIIQFVYGEDGLDAGHVEKQTIDTLPGEDSTF 706

Query: 902  DKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDS 961
            +K ++ ++  E  + N  L E   ++    E++D+ DAE  +L  DR +   ++   G+ 
Sbjct: 707  EKRYKVDLVSEKTSINPSLLESGREIIGNTEIQDILDAEYAQLVEDR-KFLRKVFVDGEH 765

Query: 962  SWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQK 1021
            +WPLPVN++R++ N+Q+ F +D  + SD+   E+V  V +L  +L V+ G+ PL  EAQ 
Sbjct: 766  NWPLPVNIRRIVQNSQQIFHLDRSKASDLTIPEIVNGVKELCTKLLVLRGDTPLIHEAQA 825

Query: 1022 NATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            NAT  F  LLRS  A++RV++E+RL+R AF WV+GEIE++F +++V
Sbjct: 826  NATALFQCLLRSRLATRRVIEEYRLSRTAFIWVLGEIEAQFQRAVV 871


>gi|397135954|gb|AFO11472.1| RNA polymerase I, partial [Phaffomyces opuntiae]
          Length = 871

 Score =  999 bits (2583), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/869 (57%), Positives = 641/869 (73%), Gaps = 19/869 (2%)

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV----------RP 258
            K+ LT   +L V K I  EDC  LG +  +ARP+W+I+ VLP+PPPPV          R 
Sbjct: 12   KRVLTPGEILNVFKHIPPEDCIKLGFHNDFARPEWLIISVLPVPPPPVRPSISFNDTQRG 71

Query: 259  SDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRS 318
             DDLT++L+ I++ N N+++ E +G+P H+I+EF  LLQFH+ATY DN++ GQP+A Q+S
Sbjct: 72   EDDLTYKLSDILKANINVQKLEMDGSPQHVINEFESLLQFHVATYMDNDIAGQPQALQKS 131

Query: 319  GRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPE 378
            GRPIKSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP + +DQ+GVP SIA  LTYPE
Sbjct: 132  GRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIARTLTYPE 191

Query: 379  TVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERH 438
            TVTPYNI++L ELV  GP+  PG   AKY+IRD+G R+DLRY K++ D  L+ G+KVERH
Sbjct: 192  TVTPYNIQKLTELVRNGPNEHPG---AKYVIRDNGDRIDLRYNKRAGDIVLQYGWKVERH 248

Query: 439  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
            L D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS 
Sbjct: 249  LMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 308

Query: 499  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
            ETRAE++ +  VP  IVSPQSN+P MGIVQDTL G RK+T RD+FIE D  MNIL W  D
Sbjct: 309  ETRAELMNIAAVPLQIVSPQSNKPCMGIVQDTLAGVRKMTLRDSFIEYDQMMNILYWISD 368

Query: 559  FDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKG 618
            +DG +PQP ILKP+PLW+GKQ+ ++ IPK I+L R      D    +L+  D  + I  G
Sbjct: 369  WDGVIPQPAILKPKPLWSGKQMLSMTIPKGIHLQRF-----DEGTTLLSPKDNGMLIVNG 423

Query: 619  ELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            E+L G + KKT+G + G LIH +  E G        G  Q +VN+WLL N FSIGIGDTI
Sbjct: 424  EILFGVVDKKTVGATNGGLIHTVMREKGAAQCADLFGKIQKVVNFWLLHNGFSIGIGDTI 483

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
            ADA TM+ I + I+ AK  V  +  +AQ   L  + G T+ ESFE+ V + LN ARD+AG
Sbjct: 484  ADAGTMKEITEAIAIAKEKVDEVTLEAQQNKLTAKHGMTLRESFEDNVIRYLNEARDKAG 543

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
             SA+ +L   NN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI FGF DRTLPHF KD
Sbjct: 544  RSAEVNLKGLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFAKD 603

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
            DY PES+GFVENSYLRGLTPQEF+FHAMGGREGLIDTAVKT+ETGYIQRRLVKA+EDIMV
Sbjct: 604  DYSPESKGFVENSYLRGLTPQEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMV 663

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNY 918
             YDGT RNSLG++IQF+YGEDG+D+  +E QT+D++  +   F+K ++ ++  E  +   
Sbjct: 664  HYDGTTRNSLGNIIQFIYGEDGLDAGHVEKQTIDTIPGEDIAFEKRYKIDLVSEKTSIKP 723

Query: 919  MLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQK 978
             L E   ++    EL+ + D E  +L  DR  L  ++ + G+ +WPLPVN++R+I NAQ+
Sbjct: 724  SLLETGREIIGNTELQSLLDEEYSQLVEDRSFL-RKVFSDGEHNWPLPVNIRRIIQNAQQ 782

Query: 979  TFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASK 1038
             F +D  + SD+   E++E V +L  +L V+ GE+PL  EAQ+NAT  F  LLRS  A++
Sbjct: 783  IFHIDRSKASDLTIQEIIEGVKELTAKLFVLRGENPLIKEAQENATTLFQCLLRSRMATR 842

Query: 1039 RVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            RV++E+RL R A+ WV+GEIE++F +S+V
Sbjct: 843  RVVEEYRLNRIAYRWVLGEIEAQFQRSVV 871


>gi|397135836|gb|AFO11413.1| RNA polymerase I, partial [Torulaspora delbrueckii]
          Length = 871

 Score =  998 bits (2581), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/882 (57%), Positives = 646/882 (73%), Gaps = 37/882 (4%)

Query: 204  EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------- 256
            EP +R   LT E +L + K IS ED   LG N ++ARP+WMIL VLP+PPPPV       
Sbjct: 9    EPEQR--ILTMEEILNIFKHISKEDSNRLGFNEEFARPEWMILTVLPVPPPPVRPSISFN 66

Query: 257  ---RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT +LA I++ N +L   E NGAP H I E   LLQFH+ATY DN++ GQP+
Sbjct: 67   ESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQ 126

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP + +DQ+GVP SIA  
Sbjct: 127  ALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKT 186

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPE VTPYNI+RL  LV  GP+  PG   AKY+IRD+G R+DLRY K++ D  L+ G+
Sbjct: 187  LTYPEVVTPYNIDRLTFLVRNGPNEHPG---AKYVIRDNGDRIDLRYSKRAGDIQLQYGW 243

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 244  KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G RK+T RD FIE D  +N+L
Sbjct: 304  VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDNFIELDQVLNML 363

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLV 613
             W  D+DG +P P I+KP+PLWTGKQ+ ++ IPK I+L R      D    +L+  D  +
Sbjct: 364  YWVPDWDGVIPTPAIIKPKPLWTGKQILSIAIPKGIHLQR-----FDEGTTLLSPKDNGM 418

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
             I  G+++ G + KKT+G+S+G LIHV+  E GP    +  G+ Q +VNYW L N FS G
Sbjct: 419  LIIDGKIIFGVVDKKTVGSSSGGLIHVVTREKGPQICARLFGNIQKVVNYWFLHNGFSTG 478

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGDTIAD +TM  I +TI+ AK  V+++ K+AQ   L  + G T+ ESFE+ V + LN A
Sbjct: 479  IGDTIADGQTMREITETIADAKKKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEA 538

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RD+AG  A+ +L + NN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI FGFVDRTLP
Sbjct: 539  RDKAGRLAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLP 598

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+
Sbjct: 599  HFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAL 658

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN 913
            EDIMV YD T RNSLG+VIQF+YGEDGMD+  IE Q +D++    S F+K +R ++    
Sbjct: 659  EDIMVHYDSTTRNSLGNVIQFVYGEDGMDASHIEKQAIDTIGGSDSAFEKRYRIDL---- 714

Query: 914  WNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL 965
             NP+++L         E + DLK    L+ + D E ++L  DR+ L + +   G+ +WPL
Sbjct: 715  LNPDHLLDPSLLESGSEIVGDLK----LQVLLDEEYKQLVEDRFFLRS-VFVDGEPNWPL 769

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
            PVN++R++ NAQ+TF++D  +PSD+   +V  AV  LQ++L V+ G   +   AQ++A  
Sbjct: 770  PVNIRRIVQNAQQTFRIDHTKPSDLSIRDVYFAVKNLQDKLLVLRGNSEIIKNAQQDAVS 829

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
             F  L+RS  A++RV++E+RLT++AFEWV+  IE +FL+S+V
Sbjct: 830  LFCCLMRSRLATRRVIEEYRLTKQAFEWVLNNIEIQFLRSIV 871


>gi|397135884|gb|AFO11437.1| RNA polymerase I, partial [Candida multigemmis]
          Length = 872

 Score =  998 bits (2581), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/884 (56%), Positives = 649/884 (73%), Gaps = 23/884 (2%)

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
            KK +DQEQ PE    ++ L+   +L VLK IS EDC  LG +  +ARP+WM++ VLP+PP
Sbjct: 2    KKYEDQEQ-PE----RRQLSPSEILAVLKHISPEDCFKLGFSEDFARPEWMLITVLPVPP 56

Query: 254  P----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
            P            R  DDLT +LA +++ N N++R E +G+PAH+ISEF  LLQFH+ATY
Sbjct: 57   PPVRPSIAFNDTARGEDDLTFKLADVLKANINVQRLEMDGSPAHVISEFEALLQFHVATY 116

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ
Sbjct: 117  MDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQ 176

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  L+YPE VTP+NI RL E V  GP+  PG   AKY+IRD G R+DLRY K+
Sbjct: 177  VGVPISIARTLSYPEIVTPHNIHRLTEFVRNGPNEHPG---AKYVIRDTGDRIDLRYNKR 233

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            + D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNA
Sbjct: 234  AGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNA 293

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETR+E+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD F
Sbjct: 294  DFDGDEMNLHVPQSPETRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGVRKMTLRDNF 353

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            IE D  MN+  W  D+DG +P P I+KP+PLW+GKQ+ ++ IPK I+L R      D+  
Sbjct: 354  IEYDQVMNMSYWIPDWDGVIPPPAIVKPKPLWSGKQLLSMAIPKGIHLQR-----FDDGV 408

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
             +++  D+ + I  GE++ G + KKT+G + G LIH +  E GP    +     Q +VN+
Sbjct: 409  NLMSPKDSGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQICAQLFSRIQKVVNF 468

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            WLL N FSIGIGDTIAD+ TM+ +  TI +AK  V+ +I  AQ  +LEPEPG T+ ESFE
Sbjct: 469  WLLHNGFSIGIGDTIADSSTMKDVTTTIQEAKAKVQEIILDAQRNTLEPEPGMTLRESFE 528

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
            + V+++LN ARD AG +A+ +L + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRI
Sbjct: 529  HNVSRILNQARDTAGRTAEVNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRI 588

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
            PFGF DR+LPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETG
Sbjct: 589  PFGFSDRSLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETG 648

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E Q++D++      F++
Sbjct: 649  YIQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSDLNFER 708

Query: 904  AFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
             F+ ++ + +      L E   ++K   +L+ + D E  +L+ DR  L      +GD +W
Sbjct: 709  RFKVDLLDSSLGIRESLLESGKEIKGDVKLQKILDEEYNQLQQDRKYLREVCFPNGDYNW 768

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNA 1023
            PLPVNL+RLI NAQ+ F     + SD+   E+V  V +L ++L V+ G+  L+ EAQ+NA
Sbjct: 769  PLPVNLRRLIQNAQQIFHNGRPKASDLRLDEIVNGVKQLCKKLWVIRGDSNLTKEAQENA 828

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            TL F  LLRS   ++RV++E +L R +F+WV+GEIE++F +SLV
Sbjct: 829  TLLFQCLLRSRLTTRRVIEEFKLNRISFDWVLGEIETQFQKSLV 872


>gi|397135890|gb|AFO11440.1| RNA polymerase I, partial [Priceomyces castillae]
          Length = 872

 Score =  998 bits (2581), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/887 (57%), Positives = 651/887 (73%), Gaps = 30/887 (3%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP- 253
            KN D+ + PE    ++ LT   +L V + I+ EDC  LG N  YARP+WM++ VLP+PP 
Sbjct: 2    KNFDEGEQPE----RRLLTPSEILSVFRHINSEDCHKLGFNEDYARPEWMLITVLPVPPP 57

Query: 254  ---------PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT +LA +I+ N N++R E +G+P H+I+EF  LLQFH+ATY 
Sbjct: 58   PVRPSISFNDTARGEDDLTFKLADVIKANINVQRLEMDGSPQHVINEFEALLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPE VTPYNI RL ELV  GP+  PG   AKY+IRD+G R+DLRY K++
Sbjct: 178  GVPISIARTLTYPEIVTPYNIHRLTELVRNGPNEHPG---AKYVIRDNGDRIDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ E+  VP  IVS QSN+PVMGIVQDTL G RK+T RD FI
Sbjct: 295  FDGDEMNLHVPQSPETRAELSEICAVPLQIVSAQSNKPVMGIVQDTLCGVRKMTLRDIFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            + +  MN+L W  ++DG VP P+I+KP+PLWTGKQ+ ++ IPK I+L R      D+   
Sbjct: 355  DYEQVMNMLYWIPNWDGIVPPPSIIKPKPLWTGKQLLSMAIPKGIHLQR-----FDDGVN 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+A D  + I  G+++ G + KKT+G + G LIH +  E GP A  +     Q +VNYW
Sbjct: 410  LLSAKDNGMLIIDGQIMFGVVDKKTVGATGGGLIHTVMREKGPKACAQLFNSIQKVVNYW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIADA TM  +  TI +AK  V+ +I  AQ   L+PEPG T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADASTMTDVTTTIQEAKKKVQEIILDAQQNRLDPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ +L + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  NVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DR+LPHFTKD+Y PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFADRSLPHFTKDNYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRR++KA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E Q++D++      F++ 
Sbjct: 650  IQRRIIKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSVDTIPGSDLNFERR 709

Query: 905  FRFEMDEENWNPNYMLQE-YIDDLKTIK---ELRDVFDAEVQKLEADRYQLATEIATSGD 960
            +R ++     NP+  + E  ++  K IK   +L+ + D+E  +L +DR  L   + T+GD
Sbjct: 710  YRVDV----LNPDNSISESLLESGKEIKGDVKLQKILDSEYDQLLSDRKYLREVVFTNGD 765

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
             +WPLPVN++R+I NAQ+ F     + SD+   E+V  V +L  +L V+ G+ PL  EAQ
Sbjct: 766  YNWPLPVNMRRIIQNAQEIFHSGRNKASDLRLEEIVTGVKELCTKLLVIRGDTPLMKEAQ 825

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
             NATL F  L+RS  AS+RV++E +L R +FEWV+GEIE++F +S+V
Sbjct: 826  NNATLLFQCLVRSKLASRRVIEEFKLNRTSFEWVMGEIETQFQKSIV 872


>gi|397135828|gb|AFO11409.1| RNA polymerase I, partial [Nakaseomyces delphensis]
          Length = 871

 Score =  998 bits (2579), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/878 (57%), Positives = 650/878 (74%), Gaps = 29/878 (3%)

Query: 204  EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------- 256
            EP +R   L+ E +L + K IS ED   LG N ++ARP+WMIL VLP+PPPPV       
Sbjct: 9    EPEQR--VLSTEEILNIFKHISPEDSYRLGFNEEFARPEWMILTVLPVPPPPVRPSISFN 66

Query: 257  ---RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT +LA I++ N +L   E NGAP H + E   LLQFH+ATY DN++ GQP+
Sbjct: 67   ESQRGEDDLTFKLADILKANISLETLEHNGAPHHAVEEAESLLQFHVATYMDNDIAGQPQ 126

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP + +DQ+GVP SIA  
Sbjct: 127  ALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIART 186

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD+G R+DLRY K+S D  L+ G+
Sbjct: 187  LTYPEVVTPYNIDRLSQLVRNGPNEHPG---AKYVIRDNGDRIDLRYSKRSGDVQLQYGW 243

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 244  KVERHIMDEDPVLFNRQPSLHKMSMMAHRVKVVPYSTFRLNLSVTSPYNADFDGDEMNLH 303

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G RK+T RD+F+E D  +N+L
Sbjct: 304  VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDSFLEFDEVLNML 363

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLV 613
             W  D+DG +P P +LKP+PLWTGKQ+ ++ IP  I+L R      D    +L+  D  +
Sbjct: 364  YWVPDWDGVIPIPAVLKPKPLWTGKQILSVAIPNGIHLQR-----FDEGTTLLSPKDNGM 418

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
             I  GE++ GT+ KKT+G+S+G LIHV+  E GP    +  G+ Q +VN+WLL N FS G
Sbjct: 419  LIIDGEIIFGTVDKKTVGSSSGGLIHVVTREKGPTVCARLFGNIQKVVNFWLLHNGFSTG 478

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGDT+AD +TM  I++TI+ AK  V+ + K+AQ   L  + G T+ ESFE+ V + LN A
Sbjct: 479  IGDTVADGQTMREISETIADAKKKVEAVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEA 538

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RD+AG  A+ +L + NN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI FGFVDRTLP
Sbjct: 539  RDKAGRLAEMNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGFGFVDRTLP 598

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+
Sbjct: 599  HFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAL 658

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM--DE 911
            EDIMV YDGT RNSLG+VIQF+YGEDGMD+  IE Q+LD++      F++ +R ++    
Sbjct: 659  EDIMVHYDGTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTMGGSDRAFERRYRIDLLNTT 718

Query: 912  ENWNPNYML--QEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNL 969
             +  P+ +    E I DLK    ++   D E ++L  DR  L  +I + G+S+WPLPVN+
Sbjct: 719  NSLEPSLLESGSEIIGDLK----IQTALDEEYKQLVEDRRSL-RKIFSDGESNWPLPVNI 773

Query: 970  KRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNI 1029
            +R+I NAQ+TF++D  +PSD+   E++  V  LQE+L V+  +  +  +AQ++A   F  
Sbjct: 774  RRIIQNAQQTFRIDHTKPSDLTIPEIINNVRDLQEKLLVLRSKSDIIQKAQQDAITLFCC 833

Query: 1030 LLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L+RS  A++RVL+E+RLT+EAFEWV+  +ES+FL+S+V
Sbjct: 834  LVRSRLATRRVLQEYRLTKEAFEWVLNNVESQFLRSIV 871


>gi|157741600|gb|ABV69505.1| RNA polymerase II largest subunit, partial [Verrucaria nigrescens]
          Length = 999

 Score =  997 bits (2577), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 520/1023 (50%), Positives = 690/1023 (67%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D    + AL +RNPK R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEDLRYALTVRNPKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D E+P+ K+K      GGCG  QP++   G+++ A+YK  RK +
Sbjct: 60   KQNVCQA----DSP-EDEEDPMAKDKSGKVGHGGCGNAQPQIRRSGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            DD+E +PE    K  +   + L V + ++DE  + LGLN  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DDEETVPE----KSQIWPAQALEVFQHLTDETLETLGLNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI +LK+LV  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEAHPG---ARYIIRENNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKTGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +    
Sbjct: 460  LSREQVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMISMVLPPALNLVRIDGKASQPPI 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  GEL+ G   KK++GT +  +IH I+ E G + A  F    Q ++N
Sbjct: 520  ERFAPAGDSGLFVSDGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVIN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + K K+ V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDIGTVEKIKSEVDKKKSEVERITQSAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDGAFE 819

Query: 903  KAFRFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E       + Q+ ++    I    +++ +FD E ++L  DR  L    + AT
Sbjct: 820  KLFRVDLMEPK---KLVWQDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAAT 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            S D   PLP+N++R++  A+ TFK+    PSD+HP  V+  V +L +RL +V G+DP+S+
Sbjct: 877  SADEMMPLPMNVQRILNQARTTFKIQSGAPSDLHPTYVIPKVQQLLDRLVIVRGDDPISL 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ NATL    LLRS  A KR++ E+ L R AF+ V+G IE+RF+++   PGEM+G +A
Sbjct: 937  EAQNNATLLIKALLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKAAANPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|397135868|gb|AFO11429.1| RNA polymerase I, partial [Clavispora lusitaniae]
          Length = 872

 Score =  996 bits (2576), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/887 (57%), Positives = 648/887 (73%), Gaps = 30/887 (3%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP- 253
            K+ D+ + PE    ++ LT   +L V K IS EDC  LG N  YARP+WM++ VLP+PP 
Sbjct: 2    KSFDESEQPE----RRLLTPSEILSVFKHISSEDCHRLGFNEDYARPEWMLITVLPVPPP 57

Query: 254  ---------PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT +LA II+ N N++R E +G+P H+ISEF  LLQFH+ATY 
Sbjct: 58   PVRPSIAFNDTARGEDDLTFKLADIIKANINVQRLEMDGSPQHVISEFEALLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPE VTPYNI RL E V  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 178  GVPLSIARTLTYPEIVTPYNIHRLTEYVRNGPNEHPG---AKYVIRDTGDRIDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD FI
Sbjct: 295  FDGDEMNLHVPQSQETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E +  MN+L W  ++DG +P P I+KP+PLW+GKQ+ ++ IPK I+L R      D+   
Sbjct: 355  EYEQVMNMLYWIPNWDGVIPPPAIIKPKPLWSGKQILSMAIPKGIHLQRF-----DDGND 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  D  + I  GE++ G + KKT+G + G LIH +  E G     +     Q +VNYW
Sbjct: 410  MLSPKDKGILIVDGEIIFGVVDKKTVGATGGGLIHTVMREKGSQVCAQLFSSIQKVVNYW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIAD  TM  +  TI +AK  V+ +I  AQ   LEPEPG T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADKDTMRDVTTTIQEAKQKVQEIIMDAQQNRLEPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ +L + NN+K MVT+GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  NVSRVLNQARDTAGRSAEMNLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DRTLPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E Q++D++    ++F+K 
Sbjct: 650  IQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTAVEKQSVDTIPGSDAKFEKR 709

Query: 905  FRFEMDEENWNPNYMLQE-YIDDLKTIK---ELRDVFDAEVQKLEADRYQLATEIATSGD 960
            +R ++     +P+  + E  +D  K IK   +L+ V D+E ++L  DR  L      +GD
Sbjct: 710  YRIDL----LDPSKSISESLLDSGKEIKGDVKLQKVLDSEYEQLLKDRKYLREVCFPNGD 765

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
             +WPLPVNL+R+I NAQ+ F    +R SD+   E+VE V  L  +L V+ G+  L+ EAQ
Sbjct: 766  FNWPLPVNLRRIIQNAQQIFHSGRQRASDLKLDEIVEGVKALCSKLLVIRGKSRLAKEAQ 825

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            ++ATL F  L+RS  A++R+++E +L+R +FEWV GEIE++F +S+V
Sbjct: 826  EDATLLFQCLVRSRLAARRIIEEFKLSRISFEWVCGEIETQFQKSIV 872


>gi|37726869|gb|AAO38801.1| DNA-dependent RNA polymerase II largest subunit [Gregarina
            niphandrodes]
          Length = 1020

 Score =  996 bits (2574), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1042 (47%), Positives = 694/1042 (66%), Gaps = 55/1042 (5%)

Query: 77   PGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKK 136
            PGHFGH+E  KP+F+IGF+  V++++R VC++C K+L  +DD +F   ++IR P+ RL K
Sbjct: 1    PGHFGHIEFVKPVFNIGFLPAVITVLRCVCYSCGKLLVSQDDARFLSVMRIRGPRARLAK 60

Query: 137  ILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQR--- 193
            +L  C+ K  CE G E                GGCG  QP+   + + ++ ++ A     
Sbjct: 61   LLTLCRTKPSCEPGPE----------------GGCGCLQPQYRKDNVNILVDFGAAAAAG 104

Query: 194  -------KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMIL 246
                   ++N   +Q+ +    K+  +AE VL V  +IS+ D +L+G +  +ARP WM++
Sbjct: 105  AGGDESGRENGGDDQIGDT---KRVFSAEEVLAVFSKISEHDMKLMGFDITFARPSWMVI 161

Query: 247  QVLPIPPPPVRP---------SDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
            Q + + PP VRP          DDLT +L  I++ N  L++ E  G   H++ E   +LQ
Sbjct: 162  QSMLVIPPCVRPYVHFGSDRSEDDLTIKLLDIVKVNRQLQKYESTGVAQHVVQETVAVLQ 221

Query: 298  FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
            +H+AT+ +NE+PG P AT +S +P+KSI  RLK KEGR+RGNLMGKRVDFSARTVIT DP
Sbjct: 222  YHVATFMNNEIPGLPVATTKSKKPMKSIRERLKGKEGRLRGNLMGKRVDFSARTVITGDP 281

Query: 358  TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
             + IDQ+GVP SIA+NLTYPE VT  N+E L++ V  GP   PG   A+YI R DG R D
Sbjct: 282  NLQIDQVGVPRSIAMNLTYPELVTSMNLEMLRKAVSNGPSVWPG---ARYITRTDGTRFD 338

Query: 418  LRYLKKS-SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLS 476
            LR+   + +   LE GYKVERH+ DGD+VLFNRQPSLHKMSIMGHR+K++P+STFR NLS
Sbjct: 339  LRHCAGNPAVLQLEPGYKVERHVRDGDYVLFNRQPSLHKMSIMGHRVKVLPWSTFRCNLS 398

Query: 477  VTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRK 536
            VT+PYNADFDGDEMN+H+ QS ETRAE+ +L +VPK IVSPQ N+PVMGIVQD+LLG  K
Sbjct: 399  VTAPYNADFDGDEMNLHLAQSQETRAEIKQLCLVPKQIVSPQGNKPVMGIVQDSLLGLAK 458

Query: 537  ITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII------PKQIN 590
            +T RDTFI++ + M + +W  D+DG +P P I KP  LWTGKQ+  +I+         + 
Sbjct: 459  MTSRDTFIDRPIMMGLCLWVRDWDGILPAPVIYKPEKLWTGKQLITMILKAGQRGANHVT 518

Query: 591  LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
            L R  A     D   L+A D  + I+  E ++G +CK+T GTS+GSLIHV+W + GP+  
Sbjct: 519  LHRDGAIRLKQDNEYLSANDGRIIIQDSEHVAGIICKRTAGTSSGSLIHVLWHQCGPEKT 578

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            + FL  TQ +VN WL+   F++G+ D +AD+KT+  + + +  +   V  LI+ A+   L
Sbjct: 579  KDFLSSTQKVVNNWLVSIGFTVGVSDIVADSKTVSRVKEALDDSYVKVDELIRLARQGKL 638

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            E +PG++++ESFEN+VNQ LN AR+ +G  A ++L+  NN+ +MV AGSKGS INISQ+ 
Sbjct: 639  ETQPGKSLLESFENRVNQELNQAREASGRIAAENLTNKNNIISMVNAGSKGSTINISQIM 698

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQNVEGKRIPFGF DR+LPHF + DYGP+SRGFV NSYL GL P E FFHAMGGRE
Sbjct: 699  ACVGQQNVEGKRIPFGFQDRSLPHFLRHDYGPDSRGFVYNSYLSGLLPHELFFHAMGGRE 758

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            G+IDTA KTSETGYIQRRLVKAMED++V YD TVRNS G+++QFLYGEDGM   ++E Q 
Sbjct: 759  GIIDTACKTSETGYIQRRLVKAMEDVLVTYDRTVRNSNGEIVQFLYGEDGMAGEYVEDQL 818

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYM-LQEYIDDLKTIKELRDVFDAEVQKLEADRY 949
            LD L++   + +K ++    + ++   ++  +E  DD+    E + +   E Q+L     
Sbjct: 819  LDLLRLDYDKIEKRYKHNFRDPDYGTGWIPSKEVRDDIMYSIEKQTILVGEWQQLVQGHR 878

Query: 950  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL-QERLKV 1008
            +L TEI   G++   LPVN+ RLI  A+  +  +    + + P+++V+A +KL    L V
Sbjct: 879  RLCTEIFCDGEAKQHLPVNIPRLIQIAKSKYGAEDM--TKVSPIDIVQATEKLVNNDLMV 936

Query: 1009 VPGEDPLSV---EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
                + L+    EAQ NAT  F+I  R+   S++++++ +L  +A +W+  E+  +F +S
Sbjct: 937  FSQHNMLASIYKEAQNNATTLFSINCRTNLNSRKLMEKDKLGPQALDWLFKEVGRQFQRS 996

Query: 1066 LVAPGEMIGCVAAQSIGEPATQ 1087
            L  PGE++G +AAQSIGEPATQ
Sbjct: 997  LAPPGEVVGALAAQSIGEPATQ 1018


>gi|397135822|gb|AFO11406.1| RNA polymerase I, partial [Ascoidea rubescens]
          Length = 872

 Score =  996 bits (2574), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/868 (57%), Positives = 632/868 (72%), Gaps = 20/868 (2%)

Query: 211  TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP----------PPVRPSD 260
            TL    VL   K IS EDC+ LG +  YARP+WMI+ VLP+PP             R  D
Sbjct: 14   TLAPSEVLEAFKHISLEDCRRLGFDENYARPEWMIITVLPVPPPPVRPSIAFNESARGED 73

Query: 261  DLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGR 320
            DLT +LA I++ + N+++ E +G+P H+I EF  LLQ+H+ATY DN++ GQP A  +SGR
Sbjct: 74   DLTFKLADILKASINVQKLELDGSPQHVIIEFENLLQYHVATYMDNDIAGQPLAKHKSGR 133

Query: 321  PIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETV 380
             IKSI +RLK+KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+GVP SIA  LTYPE V
Sbjct: 134  AIKSIRARLKSKEGRVRGNLMGKRVDFSARTVISGDPNLDLDQVGVPRSIARILTYPEIV 193

Query: 381  TPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLN 440
            TPYNI RL E V  GP+  PG   AK++IRD G R+DL+Y KK+ D  L+ G++VERHL 
Sbjct: 194  TPYNIHRLTEYVRNGPNEHPG---AKHVIRDTGDRIDLKYHKKAGDIQLQYGWRVERHLM 250

Query: 441  DGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFET 500
            D D VLFNRQPSLHKMS+M HR KIMPYSTFR+NLSVTSPYNADFDGDEMN+HVPQS ET
Sbjct: 251  DDDPVLFNRQPSLHKMSMMCHRAKIMPYSTFRINLSVTSPYNADFDGDEMNLHVPQSAET 310

Query: 501  RAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFD 560
            RAE+  L+ VP  IVSPQSN+PVMGIVQDTL G RK+T RD FIE D  M I  W +D++
Sbjct: 311  RAELQNLVAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMQICYWVKDWN 370

Query: 561  GKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGEL 620
            G +P P ILKP+PLWTGKQ+ +L IP+ I+L R      D    +L+  D  + I  GE+
Sbjct: 371  GIMPPPAILKPKPLWTGKQLLSLAIPEGIHLLRF-----DEKTTLLSPNDDGMLIINGEI 425

Query: 621  LSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIAD 680
            + G + KKT+G + G LIH +  E G  A     G+ Q +VNYWLL N FSIGIGDTIAD
Sbjct: 426  MFGIVNKKTVGATNGGLIHTVMREKGSKACADLFGNIQKIVNYWLLHNGFSIGIGDTIAD 485

Query: 681  AKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSS 740
            A TM+ I  TI++AK  V++LI  AQ   LE EPG T+ ESFE+KV++VLN ARD+AG  
Sbjct: 486  ADTMKKITTTIAEAKQKVQDLILDAQANRLELEPGMTLRESFESKVSRVLNQARDDAGHC 545

Query: 741  AQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDY 800
            AQ +L E NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIPFGF DRTLPHFTKDD+
Sbjct: 546  AQMNLKELNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRTLPHFTKDDF 605

Query: 801  GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKY 860
             PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+EDIMV Y
Sbjct: 606  SPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHY 665

Query: 861  DGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEENWNPNYM 919
            DGT RNS+G +IQF+YGEDG+D+  +E Q +D++    ++F+K +R + MD      + +
Sbjct: 666  DGTTRNSVGAIIQFIYGEDGLDATQVEKQPIDTIPGSDNKFEKKYRIDLMDPSKCIRSSL 725

Query: 920  LQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKT 979
            LQ   DD++   +L+ + D E  +L  DR  L T +  +G+  WPLPVN++R+I NAQ+ 
Sbjct: 726  LQSG-DDIRGNSQLQAILDEEYNQLLEDRKYLRTSVFPNGEYKWPLPVNIRRVIQNAQQN 784

Query: 980  FKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKR 1039
            F  D    SD++  ++V  V +L  +L V+ GE  L  E Q+NATL F  L+RS  AS+R
Sbjct: 785  FHCDNGEASDLNLEDIVRGVQELCSKLTVIRGEGKLVEEVQQNATLLFLCLIRSRLASRR 844

Query: 1040 VLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            V++E +L + AFEW++G+I+S F +S+V
Sbjct: 845  VIEEFKLNKAAFEWILGDIQSLFQKSIV 872


>gi|397135894|gb|AFO11442.1| RNA polymerase I, partial [Schwanniomyces occidentalis]
          Length = 872

 Score =  995 bits (2573), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/883 (57%), Positives = 641/883 (72%), Gaps = 22/883 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN D+ + PE    ++ LT   +L V K IS EDC  LG N  YARP+WM++ VLP+PPP
Sbjct: 2    KNFDESEQPE----RRLLTPSEILSVFKHISPEDCHRLGFNEDYARPEWMLITVLPVPPP 57

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT +LA +I+ N N++R E +G+P H+ISEF  LLQFH+ATY 
Sbjct: 58   PVRPSIAFNDTARGEDDLTFKLADVIKANINVQRLEMDGSPQHVISEFEALLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  L+YPE VTPYNI RL E V  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 178  GVPISIARTLSYPEVVTPYNIHRLTEFVRNGPNEHPG---AKYVIRDTGDRIDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ E+  VP  I+SPQSN+PVMGIVQDTL G RK+T RD FI
Sbjct: 295  FDGDEMNLHVPQSPETRAELSEICAVPLQIISPQSNKPVMGIVQDTLCGIRKMTLRDNFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E D  MN+L W  ++DG +P P I+KP+PLWTGKQ+ ++ IPK I+L R      D  K 
Sbjct: 355  EYDQVMNMLYWIPNWDGVIPPPAIIKPKPLWTGKQILSMAIPKGIHLQRF-----DEGKN 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  D  + I  GE++ G + KKT+G + G LIH +  E GP    +     Q +VN+W
Sbjct: 410  LLSPKDNGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPQVCAQLFSSIQKVVNFW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL + FSIGIGDTIADA TM  +  TI +AKN V+ +I  AQ   LEPEPG T+ ESFE+
Sbjct: 470  LLHSGFSIGIGDTIADASTMRDVTSTIQEAKNKVQEIILDAQLNKLEPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ +L + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  NVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DRTLPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRR++KA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E Q++DS+      F + 
Sbjct: 650  IQRRIIKALEDIMVHYDGTTRNSLGDIIQFIYGEDGIDGTQVEKQSIDSIPGSDVSFGRR 709

Query: 905  FRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWP 964
            +R ++ + + +    L E   ++K   +L+ + D E  +L  DR  L      +GD +WP
Sbjct: 710  YRIDVLDPSKSIAESLLESGKEIKGDVKLQKILDEEYNQLLEDRKYLREICFPNGDYNWP 769

Query: 965  LPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNAT 1024
            LPVNL+R I NAQ+ F     + SD+   E+V  V +L  +L V+ G+  L  EAQ NAT
Sbjct: 770  LPVNLRRTIQNAQQIFHSGRHKASDLRLDEIVNGVKELCTKLLVIRGDTSLMKEAQANAT 829

Query: 1025 LFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L F  LLRS  A++RV++E RL+R +FEWV+GEIE++F +S+V
Sbjct: 830  LLFQCLLRSRLAARRVIEEFRLSRISFEWVLGEIETQFQKSIV 872


>gi|157741608|gb|ABV69509.1| RNA polymerase II largest subunit, partial [Wahlenbergiella
            striatula]
          Length = 999

 Score =  994 bits (2571), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1018 (50%), Positives = 678/1018 (66%), Gaps = 39/1018 (3%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            + LA P++H GF+  V  I+ +VC NC KI A  D  + + AL +R+ K R + I    +
Sbjct: 1    IRLAVPVYHYGFLGKVKKILETVCHNCGKIKAI-DSEELRYALSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK-GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
             +  C+     D      +E + + + GGCG  QP +   G+++ A+YK   K +D+++ 
Sbjct: 60   KQNTCQADPPDDGDDALIKEKIGRVRHGGCGNAQPAIRKTGLELWAQYKPA-KGDDEEDI 118

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS-- 259
            +PE    K  +   + L V + +SDE    LGLN  +ARP+WMILQ L +PPPPVRPS  
Sbjct: 119  IPE----KSQIWPAQALQVFQHLSDETLDTLGLNLDFARPEWMILQSLTVPPPPVRPSIS 174

Query: 260  -----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
                       DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN++
Sbjct: 175  VDGSGQGQRGEDDLTFKLGDIIRANQNLLRVSAEGAPDHIAKELQALLQYHVATYMDNDI 234

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
                +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP 
Sbjct: 235  ANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPR 294

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            +IA NLTYPETVT +NI RL +LV  GP+  PG   AKY++R  G+R+DLR++K S    
Sbjct: 295  TIARNLTYPETVTKFNIGRLSQLVANGPNVHPG---AKYVVRKQGERIDLRHMKTSRGVE 351

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            L+ G KVERHL D D +LFNRQP          R+++MPYSTFRLNLSVT+PYNADFDGD
Sbjct: 352  LQTGMKVERHLMDEDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGD 404

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ +D 
Sbjct: 405  EMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRDE 464

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKGILT 607
             MNI++W  D+DG +PQP I KPRP WTGKQ+ N+++P  +NL R  A  + +  +    
Sbjct: 465  VMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMINMVLPTALNLVRIDAKASQSPCERFAP 524

Query: 608  AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 667
            AGD  + +  G+LL G   KK++GT +  +IH I+ E G +A   F    Q +VNYWLL 
Sbjct: 525  AGDGGLFVADGQLLFGLFNKKSVGTGSNGIIHTIFNEFGHEATMAFFNGAQTVVNYWLLH 584

Query: 668  NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVN 727
            N FSIGIGDT+ D  T+E +   ++K K  V+ + + A  + LE  PG  + E+FE+KV+
Sbjct: 585  NGFSIGIGDTVPDVGTVEKVRLEVNKKKAEVEEITQSAVAEDLEALPGMNVRETFESKVS 644

Query: 728  QVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 787
              LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKRIPFGF
Sbjct: 645  AALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPFGF 704

Query: 788  VDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQR 847
              RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQR
Sbjct: 705  KYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQR 764

Query: 848  RLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF 907
            RLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + +    F+K FR 
Sbjct: 765  RLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIALSDKAFEKQFRV 824

Query: 908  EMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR--YQLATEIATSGDSS 962
            ++ E     W+      E   +++   +++ +FD E  +LE DR   +   + ATS D  
Sbjct: 825  DLMESKNLTWHDRL---ELASEIQGDVDVQKLFDEEYDQLEEDRKFLRFIKQAATSSDEM 881

Query: 963  WPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKN 1022
             PLP+N+ R++  A+ TF +     SD+HP  V+  V +L +RL VV G+D +S+EAQ+N
Sbjct: 882  MPLPMNIVRILNQARTTFNIQSGAASDLHPSYVIPKVKQLLDRLVVVRGDDRISIEAQEN 941

Query: 1023 ATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            ATL     LRS  A KR++ E+ L R AF+ V+G +E+RF+++  +PGEM+G +AAQS
Sbjct: 942  ATLLIKAQLRSRLAFKRLVLEYSLNRLAFDHVVGAVETRFIKAAASPGEMVGVLAAQS 999


>gi|397135898|gb|AFO11444.1| RNA polymerase I, partial [Scheffersomyces stipitis]
          Length = 872

 Score =  994 bits (2571), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/884 (58%), Positives = 642/884 (72%), Gaps = 24/884 (2%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN ++ + PE    ++ LT   +L VLK IS  DC  LG N  YARP+WM++ VLP+PPP
Sbjct: 2    KNFEENEQPE----RRLLTPSEILNVLKHISSLDCLRLGFNEDYARPEWMLITVLPVPPP 57

Query: 255  ----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
                        R  DDLT +LA +++ N N++R E +G+P H+ISEF  LLQFH+ATY 
Sbjct: 58   PVRPSIAFNDTARGEDDLTFKLADVLKANINVQRLEMDGSPQHVISEFEALLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  L+YPE VTPYNI RL E V  GP+  PG   AKY+IRD G R+DLRY K++
Sbjct: 178  GVPISIARTLSYPEVVTPYNIHRLTEYVRNGPNEHPG---AKYVIRDTGDRIDLRYNKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIALQYGWKVERHLMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ E+  VP  IVSPQSN+PVMGIVQDTL G RK+T RD FI
Sbjct: 295  FDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            + D  MN+L W  ++DG +P P I KP+PLWTGKQ+ ++ IPK I+L R      D  K 
Sbjct: 355  DYDQVMNMLYWIPNWDGVIPPPAIAKPKPLWTGKQLLSMAIPKGIHLQR-----FDGGKD 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  DT + I  GE++ G + KKT+G + G LIH +  E GP    +     Q + NYW
Sbjct: 410  LLSPKDTGMLIVDGEIMFGVVDKKTVGATGGGLIHTVMREKGPRVCAQLFSSIQKVTNYW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL N FSIGIGDTIAD  TM+ I  TIS+AK  V+ +I  AQ   LEPEPG T+ ESFE+
Sbjct: 470  LLHNGFSIGIGDTIADVSTMKDITSTISEAKIKVQEIILDAQSNKLEPEPGMTLRESFEH 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V++VLN ARD AG SA+ +L + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIP
Sbjct: 530  NVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIP 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF DRTLPHFTKDDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 590  FGFSDRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLGD+IQF+YGEDG+D   +E Q++D++      F++ 
Sbjct: 650  IQRRLVKALEDIMVHYDGTTRNSLGDIIQFVYGEDGIDGTQVEKQSVDTIPGSNDSFERR 709

Query: 905  FRFE-MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
            FR + +D     P  +L E   ++K   +L+ V D E ++L  DR  L      +GD SW
Sbjct: 710  FRIDVLDSSKSIPESLL-ESGKEIKGDVKLQKVLDEEYKQLLDDRKYLREVCFPNGDFSW 768

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNA 1023
            PLPVNL+R+I NAQ+ F     + SD+   EV+  V  L E+L VV G+  L  EAQ NA
Sbjct: 769  PLPVNLRRIIQNAQQIFHNGRYKASDLRLDEVIVGVRSLCEKLLVVRGDTELVKEAQANA 828

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            TL F  L+RS  AS+RV++E +L R +FEWV+GEIE++F +S+V
Sbjct: 829  TLLFQCLVRSRLASRRVIEEFKLNRSSFEWVVGEIETQFQKSIV 872


>gi|397135834|gb|AFO11412.1| RNA polymerase I, partial [Saccharomyces cerevisiae]
          Length = 871

 Score =  994 bits (2569), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/872 (57%), Positives = 640/872 (73%), Gaps = 27/872 (3%)

Query: 210  QTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV----------RPS 259
            + L+ E +L + K IS +D   LG N  ++RP+WMIL  LP+PPPPV          R  
Sbjct: 13   RVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGE 72

Query: 260  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
            DDLT +LA I++ N +L   E NGAP H I E   LLQFH+ATY DN++ GQP+A Q+SG
Sbjct: 73   DDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQALQKSG 132

Query: 320  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
            RP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP + +DQ+GVP SIA  LTYPE 
Sbjct: 133  RPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKTLTYPEV 192

Query: 380  VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHL 439
            VTPYNI+RL +LV  GP+  PG   AKY+IRD G R+DLRY K++ D  L+ G+KVERH+
Sbjct: 193  VTPYNIDRLTQLVRNGPNEHPG---AKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHI 249

Query: 440  NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 499
             D D VLFNRQPSLHKMS+M HR+K++PYSTFRLNLSVTSPYNADFDGDEMN+HVPQS E
Sbjct: 250  MDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEE 309

Query: 500  TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 559
            TRAE+ +L  VP  IVSPQSN+P MGIVQDTL G RK+T RDTFIE D  +N+L W  D+
Sbjct: 310  TRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDW 369

Query: 560  DGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGE 619
            DG +P P I+KP+PLW+GKQ+ ++ IP  I+L R      D    +L+  D  + I  G+
Sbjct: 370  DGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQR-----FDEGTTLLSPKDNGMLIIDGQ 424

Query: 620  LLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 679
            ++ G + KKT+G+S G LIHV+  E GP    K  G+ Q +VN+WLL N FS GIGDTIA
Sbjct: 425  IIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIA 484

Query: 680  DAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGS 739
            D  TM  I +TI++AK  V ++ K+AQ   L  + G T+ ESFE+ V + LN ARD+AG 
Sbjct: 485  DGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGR 544

Query: 740  SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDD 799
             A+ +L + NN+K MV AGSKGSFINI+QM+ACVGQQ+VEGKRI FGFVDRTLPHF+KDD
Sbjct: 545  LAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDD 604

Query: 800  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
            Y PES+GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+EDIMV 
Sbjct: 605  YSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVH 664

Query: 860  YDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM--DEENWNPN 917
            YD T RNSLG+VIQF+YGEDGMD+  IE Q+LD++    + F+K +R ++   +   +P+
Sbjct: 665  YDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPS 724

Query: 918  YML--QEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWN 975
             +    E + DLK    L+ + D E ++L  DR +   E+   G+++WPLPVN++R+I N
Sbjct: 725  LLESGSEILGDLK----LQVLLDEEYKQLVKDR-KFLREVFVDGEANWPLPVNIRRIIQN 779

Query: 976  AQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1035
            AQ+TF +D  +PSD+   ++V  V  LQE L V+ G++ +   AQ++A   F  LLRS  
Sbjct: 780  AQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRL 839

Query: 1036 ASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            A++RVL+E+RLT++AF+WV+  IE++FL+S+V
Sbjct: 840  ATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVV 871


>gi|119643486|gb|ABL85572.1| RNA polymerase II largest subunit [Candelariella reflexa]
          Length = 989

 Score =  993 bits (2566), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/1004 (51%), Positives = 683/1004 (68%), Gaps = 53/1004 (5%)

Query: 103  RSVCFNCSKI-----LADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCE---GGDEID 154
            RS    C+ I     L    + +F +AL+ R+PK R +    +CK K  CE      E  
Sbjct: 8    RSFLKQCATIVGRYWLMKLSNPQFTEALRFRDPKRRFEAFWRSCKPKMFCEPDEDSKEES 67

Query: 155  VPGQDGEEPLKKNK--GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTL 212
              G + +EP KKN+  GGCG  QP++  EG+K++  +K  + + D+     +P E+K  +
Sbjct: 68   FGGDNLKEP-KKNRTHGGCGNVQPEVRREGLKLMGTWKVPKGEEDE----GQPNEKK-PI 121

Query: 213  TAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPPPPVRPS 259
            T +  L V + IS E+ + +GL+  YARP+WMI+ V             +      +R  
Sbjct: 122  TPQAALNVFRHISTEEIRKMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGSGQGMRGE 181

Query: 260  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
            DDLT++L  IIR N N+RR E+ G+PAH++ EF  LLQFH+ATY DN++ GQP+A Q+SG
Sbjct: 182  DDLTYKLGDIIRANGNVRRCEQEGSPAHVVQEFESLLQFHVATYMDNDIAGQPQALQKSG 241

Query: 320  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
            RP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPET
Sbjct: 242  RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 301

Query: 380  VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHL 439
            VTPYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KVERH+
Sbjct: 302  VTPYNIQKLHQLVKNGPNEHPG---AKYVIRDTGERIDLRHHKRAGEISLQYGWKVERHI 358

Query: 440  NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 499
             DGDF         HK S+MGHR+++MPYSTFRLNLSVTSPYNADFDG EMN+HVPQS E
Sbjct: 359  VDGDFXXXXXXXXXHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGYEMNLHVPQSEE 418

Query: 500  TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 559
            TRAEV +L MVP  IVSPQ N P+MGIVQDTL G   + +RD F+ K++ MN+L+W  D+
Sbjct: 419  TRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYNMCRRDVFLTKELXMNVLLWVPDW 478

Query: 560  DGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA--AWHADNDKGILTAGDTLVRIEK 617
            DG +PQP I+KP+P+WTGKQ+ +L+IP  +NL R++   ++  ND G+L +G        
Sbjct: 479  DGVIPQPAIIKPKPMWTGKQILSLVIPTGLNLLRSSDEGFYPINDHGLLISG-------- 530

Query: 618  GELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDT 677
            GEL+ G L KK++G S G +IH+I+ E G  AA  F    Q +VNYWLL   FSIGIGDT
Sbjct: 531  GELMYGLLNKKSVGASGGGIIHIIYNEKGWGAAMNFFNGAQTVVNYWLLHXGFSIGIGDT 590

Query: 678  IADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEA 737
            I D  T++ I D ++K K+    + + A +  L+  PG  + E+FE+KV++ LN ARD+A
Sbjct: 591  IPDRNTIQQIEDAVNKQKDEAGEITRSATENELDSLPGMNVRETFESKVSKALNKARDDA 650

Query: 738  GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTK 797
            G+  +KSL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTK
Sbjct: 651  GTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTK 710

Query: 798  DDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIM 857
            DDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M
Sbjct: 711  DDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVM 770

Query: 858  VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN---- 913
             KYDGTVRNSLGD++QF+YGEDG+D V IESQ +D +     + +K FR ++ + N    
Sbjct: 771  AKYDGTVRNSLGDIVQFVYGEDGLDGVHIESQRVDIITCSDKQLEKKFRIDLMDSNPDTS 830

Query: 914  WNPNYM--LQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
             +P ++    + I DL+T + L D    E ++L A R +              LP+N+ R
Sbjct: 831  ISPEFLEGANDMIGDLETQEYLED----EYRQLLAAR-EFLRRNKQDDSEQLQLPINVIR 885

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            ++  A+ TFK+     S++HP +VV  V+ L +RL VV GED LS E Q NATL F   L
Sbjct: 886  ILDTAKSTFKIKNGARSNLHPAQVVPQVNDLLDRLVVVRGEDALSKEGQHNATLLFKAQL 945

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGC 1075
            RS  A KR++ E+ L + AF+ V+GEIESRF ++ V PGEM+G 
Sbjct: 946  RSRLAFKRLVMENSLNQLAFQHVLGEIESRFCRAAVNPGEMVGV 989


>gi|397135852|gb|AFO11421.1| RNA polymerase I, partial [Hanseniaspora valbyensis]
          Length = 871

 Score =  992 bits (2565), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/869 (56%), Positives = 649/869 (74%), Gaps = 19/869 (2%)

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS--------- 259
            ++ ++ E VL + + IS EDC  LG +  Y+RP+WM+L VLP+PPP VRPS         
Sbjct: 12   QRNISPEEVLNIFRHISVEDCWRLGFDEDYSRPEWMLLTVLPVPPPCVRPSVAFNESQRG 71

Query: 260  -DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRS 318
             DDLT++L  I++ N N+++ E  GAP H+I +F +LLQ+H+ATY DN++ GQP+A Q+S
Sbjct: 72   EDDLTYKLGDILKANINVQKLEIEGAPQHVIHDFEKLLQYHVATYMDNDIAGQPQALQKS 131

Query: 319  GRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPE 378
            GRP+KSI +RLK KEGRIR NLMGKRVDFSARTVI+ DP + +DQ+GVP SIA  LTYPE
Sbjct: 132  GRPVKSIRARLKGKEGRIRSNLMGKRVDFSARTVISGDPNLELDQVGVPLSIAKTLTYPE 191

Query: 379  TVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERH 438
             VTPYNI+RL +LV+ GP+  PG   AKY+IRD+G R+DLRY K++ D  L+ G+KVERH
Sbjct: 192  IVTPYNIDRLTQLVKNGPNQHPG---AKYVIRDNGTRIDLRYNKRAGDLQLQYGWKVERH 248

Query: 439  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
            + D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS 
Sbjct: 249  IVDEDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 308

Query: 499  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
            ET+AE+ +L  VP  IVSPQSN+P MGIVQDTL G RK+T R+ FI+ +  +N+L W  D
Sbjct: 309  ETKAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGVRKMTLRNNFIDYEQVLNMLYWIPD 368

Query: 559  FDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKG 618
            +DG VP P I+KP+PLWTGKQ+ +  IPK I+L R      D+   +L+  D  + +  G
Sbjct: 369  WDGNVPPPAIIKPKPLWTGKQLLSAAIPKGIHLQR-----FDDGTTMLSPKDNGILVVDG 423

Query: 619  ELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            E++ G + KKT+G+S G LIHV+ +E GP    K   + Q +VNYW L N FSIGIGDTI
Sbjct: 424  EIIFGVVDKKTVGSSAGGLIHVVTKEKGPYVCAKLFSNIQKVVNYWFLHNGFSIGIGDTI 483

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
            AD KTM  I + I+ AK  V+ + K+AQ+  L  + G T+ ESFE+ V + LN ARD+AG
Sbjct: 484  ADEKTMLEITEAIAIAKVKVEEVTKEAQENLLSAKHGMTLRESFEDNVVRFLNEARDKAG 543

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
             SA+ +L   NN+K MV++GSKGSFINI+QM+ACVGQQ+VEGKRIPFGF DRTLPHF+KD
Sbjct: 544  RSAEVNLKSLNNVKQMVSSGSKGSFINIAQMSACVGQQSVEGKRIPFGFADRTLPHFSKD 603

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
            DY PES+GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+EDIMV
Sbjct: 604  DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMV 663

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNY 918
             YDGT RNSLG+VIQF+YGEDG+D+  +E Q++D++    + F+K +R ++  ++ +   
Sbjct: 664  HYDGTTRNSLGNVIQFIYGEDGLDAGHVEKQSIDTIPGSDAAFEKKYRLDIMNKDADMVR 723

Query: 919  MLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQK 978
            +L E   ++   KE++ + + E ++L +DR  L  ++ T G+++WPLP NL+R+I NAQ 
Sbjct: 724  LLLESGSEVIGNKEIQSMLNQEYKQLISDRITL-RKVFTDGENNWPLPGNLRRIIQNAQN 782

Query: 979  TFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASK 1038
            TFK+D  +PSD+   E++E+V  LQ RL V+ G++ +  EAQ+N+   F  L+RS  + K
Sbjct: 783  TFKIDITKPSDLTIPEIIESVKGLQGRLNVIRGKNDVLKEAQENSITLFCCLIRSRLSVK 842

Query: 1039 RVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            R+++E RL ++  +WVI  IES+F +S+V
Sbjct: 843  RIIQEFRLNKQTLKWVIDNIESQFQKSIV 871


>gi|397135838|gb|AFO11414.1| RNA polymerase I, partial [Naumovozyma dairenensis]
          Length = 871

 Score =  992 bits (2564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/882 (56%), Positives = 648/882 (73%), Gaps = 37/882 (4%)

Query: 204  EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------- 256
            EP +R   L+ E +L + K IS ED   LG N ++ARP+WMIL VLP+PPPPV       
Sbjct: 9    EPEQR--VLSTEEILNIFKHISPEDSTRLGFNEEFARPEWMILNVLPVPPPPVRPSISFN 66

Query: 257  ---RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT +LA I++ N +L   E NGAP H I E   LLQFH+ATY DN++ GQP+
Sbjct: 67   ESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQPQ 126

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP + +DQ+GVP SIA  
Sbjct: 127  ALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIART 186

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD+G R+DLRY K++ D  L+ G+
Sbjct: 187  LTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDNGDRIDLRYSKRAGDIQLQYGW 243

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 244  KVERHITDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLH 303

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS ETRAE+ +L  VP  IVS QSN+P MGIVQDTL G RK+T RDTF+E D  +N+L
Sbjct: 304  VPQSEETRAELSQLCAVPLQIVSAQSNKPCMGIVQDTLCGIRKLTLRDTFLEFDEVLNML 363

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLV 613
             W  D+DG +P P I+KP+PLW+GKQV ++ IP+ I+L R      D    +L+  D  +
Sbjct: 364  YWVPDWDGVIPTPAIIKPKPLWSGKQVLSIAIPRGIHLQR-----FDEGTTLLSPKDNGM 418

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
             +  G+++ G + KKT+G+S G LIHV+  E GP    K  G+ Q +VN+WLL N FS G
Sbjct: 419  LVVDGQIIFGVVDKKTVGSSNGGLIHVVTREKGPTICAKLFGNIQKVVNFWLLHNGFSTG 478

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGDTIAD  T++ I +TI+ AK  V+++ K+AQ   L  + G T+ ESFE+ V + LN A
Sbjct: 479  IGDTIADGSTIKEITETIADAKRKVEDVTKEAQSNLLTAKHGMTLRESFEDNVVRFLNEA 538

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RD+AG  A+ +L++ NN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI +GFVDRTLP
Sbjct: 539  RDKAGRLAEMNLNDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGYGFVDRTLP 598

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+
Sbjct: 599  HFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAL 658

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN 913
            EDIMV YDGT RNSLG+VIQF+YGEDGMD+  IE Q+LD++    + F+K +R ++    
Sbjct: 659  EDIMVHYDGTARNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRIDL---- 714

Query: 914  WNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL 965
             NP   L         E   D+K    L+ + D E ++L  DR +   +I   G+S+WPL
Sbjct: 715  MNPKNALDPSLLESGSEITGDVK----LQSLLDEEYKQLIKDR-KFLRKIFVDGESNWPL 769

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
            PVN++R+I NAQ+TF++D  +PSD+   +++  +  L+ERL V+ G+  +  +AQ +A  
Sbjct: 770  PVNIRRIIQNAQQTFRIDHSKPSDLTIRDIIFGLKDLEERLLVLRGKSEIIQKAQDDAIT 829

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
             F  L+RS  +++R+L+E+RLT++AFEWV+  +E++FL+S+V
Sbjct: 830  LFCCLVRSRLSTRRILQEYRLTKQAFEWVLNNVEAQFLRSVV 871


>gi|397135846|gb|AFO11418.1| RNA polymerase I, partial [Kluyveromyces marxianus]
          Length = 871

 Score =  992 bits (2564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/869 (57%), Positives = 643/869 (73%), Gaps = 19/869 (2%)

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV----------RP 258
            K+ ++AE +L V K IS ED   LG N  ++RP+WMIL VLP+PPPPV          R 
Sbjct: 12   KRIISAEEILNVFKHISPEDGWRLGFNEDFSRPEWMILTVLPVPPPPVRPSISFNESQRG 71

Query: 259  SDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRS 318
             DDLT++L  I++ N N+++ E NG+P H+I E   LLQFH+ATY DN++ GQP+A Q+S
Sbjct: 72   EDDLTYKLGDILKANINVQKLEINGSPQHVIQESESLLQFHVATYMDNDIAGQPQAVQKS 131

Query: 319  GRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPE 378
            GRPIKSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP +++DQ+GVP SIA  LTYPE
Sbjct: 132  GRPIKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQVGVPKSIAKTLTYPE 191

Query: 379  TVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERH 438
             VTPYNI+RL +LV  GP+  PG   AKY+IR++G R+DLRY K++ D  L+ G+KVERH
Sbjct: 192  VVTPYNIDRLTQLVRNGPNEHPG---AKYVIRENGDRIDLRYSKRAGDIQLQYGWKVERH 248

Query: 439  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
            + D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADF GDEMN+HVPQS 
Sbjct: 249  ITDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFXGDEMNLHVPQSE 308

Query: 499  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
            ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G RK+T RDTFIE D  +N+L W  D
Sbjct: 309  ETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKMTLRDTFIEIDQVLNMLYWIPD 368

Query: 559  FDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKG 618
            + G +P P ILKP+PLW+GKQ+ ++ IP  I+L R      D+    L+  D  + I  G
Sbjct: 369  WXGIIPTPAILKPKPLWSGKQILSMAIPNGIHLQR-----FDDGTTFLSPKDNGMLIIDG 423

Query: 619  ELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            +++ G + KKT+G+S+G LIHV+  E GP+   +   + Q +VNYW L N FSIGIGDTI
Sbjct: 424  QIIFGVVDKKTVGSSSGGLIHVVTREKGPEICARLFSNIQKVVNYWFLHNGFSIGIGDTI 483

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
            AD KTM  I + I+ AK  V+++ K+AQ   L  + G T+ ESFE+ V + LN ARD+AG
Sbjct: 484  ADEKTMREITEAIAIAKKKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAG 543

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
             SA+ +L + NN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI FGF DRTLPHF+KD
Sbjct: 544  RSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKD 603

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
            DY PES+GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ TGYIQRRLVKA+EDIMV
Sbjct: 604  DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAXTGYIQRRLVKALEDIMV 663

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNY 918
             YDGT RNSLG+VIQF+YGEDGMD+  IE Q+ D++    + F K ++ ++  E ++ + 
Sbjct: 664  HYDGTTRNSLGNVIQFIYGEDGMDASHIEKQSXDTIPGSDAAFXKRYKIDLLNEEYSLDP 723

Query: 919  MLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQK 978
             L E   ++    +L+ + + E ++L  DR  L  +I   G+ +WPLPVN+KR+I N+Q+
Sbjct: 724  SLLESGSEIIGDSKLQLLLNEEYKQLVEDRQSL-RKIFVDGEHNWPLPVNIKRIIQNSQQ 782

Query: 979  TFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASK 1038
            TF+VD  +P+D+   +V+  V  LQ+ L +V G+  +  EAQKNA   F  LLRS  A++
Sbjct: 783  TFRVDLTKPTDLTIEDVIHGVXNLQKXLLIVRGQSDILKEAQKNAITLFCCLLRSRLATR 842

Query: 1039 RVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            RV++E+RL ++ FEWV+  IE++FL+S+V
Sbjct: 843  RVIEEYRLNKQTFEWVLNNIEAQFLRSIV 871


>gi|397135958|gb|AFO11474.1| RNA polymerase I, partial [Magnusiomyces magnusii]
          Length = 869

 Score =  992 bits (2564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/886 (57%), Positives = 640/886 (72%), Gaps = 29/886 (3%)

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
            +KN+D     E V+ K+TLT   +L   K  + ED    GL   YARP+WMI+ VLP+PP
Sbjct: 1    EKNED----GESVQEKRTLTPSEILNXFKHXTXEDXFKXGLXQDYARPEWMIITVLPVPP 56

Query: 254  ----------PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT++LA II+ ++N+ R E+ GAPAH+I+EF  LLQ+H+ATY
Sbjct: 57   PPVRPSIAINESARGEDDLTYKLADIIKASQNVDRCEQEGAPAHVINEFEALLQYHVATY 116

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP I++DQ
Sbjct: 117  MDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNIDLDQ 176

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPE VTPYNI RL E V  GP+  PG   AKYIIRD G+R+DLRY K+
Sbjct: 177  VGVPRSIARTLTYPEVVTPYNIHRLTEYVRNGPNEHPG---AKYIIRDTGERIDLRYHKR 233

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            + D  L+ G+ VERH  D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNA
Sbjct: 234  AGDIALQYGWXVERHXLDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNA 293

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETRAE+  + MVP  I++PQSN+PVMGIVQDTL G RK+TKRDTF
Sbjct: 294  DFDGDEMNLHVPQSEETRAELSXICMVPLQIITPQSNKPVMGIVQDTLCGVRKMTKRDTF 353

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
             + D  MNIL W  +++G VP+PTI+KP+PLWTGKQ+ ++ IP  I+L R        DK
Sbjct: 354  CDFDQVMNILFWIPNWNGIVPEPTIIKPKPLWTGKQMLSMCIPDGIHLRRL-------DK 406

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
              ++  D  + + KGE++ G + KKT+G S G LI +I++E G    R   G+ Q +VN+
Sbjct: 407  SPISPDDDGMLVVKGEIMYGVVNKKTIGASAGGLIDIIFKEKGAYICRDXFGNIQKVVNF 466

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            WLL N FSIGIGDTIADA TM+TI +TI +A+  V  +I  A+   LE   G T+ E+FE
Sbjct: 467  WLLHNGFSIGIGDTIADADTMKTITETIEEARXQVSQIISDAERNKLERAQGMTLRETFE 526

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
              V++ LN ARD AG  A+KSL E NN+K MV +GSKGSFINISQM+ACVGQQ VEG RI
Sbjct: 527  QNVSRTLNQARDNAGKYAEKSLKEXNNVKQMVISGSKGSFINISQMSACVGQQIVEGXRI 586

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
            PFGF DRTLPHF KDDY PES+GFVENSYLRGL+PQEFFFHAM GREGLIDTAVKT+ TG
Sbjct: 587  PFGFADRTLPHFAKDDYSPESKGFVENSYLRGLSPQEFFFHAMAGREGLIDTAVKTAXTG 646

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRRLVKA+ED+MV YDGTVRNSLGD++QF+YGEDG+D   +E Q++D++    + F +
Sbjct: 647  YIQRRLVKALEDVMVHYDGTVRNSLGDILQFVYGEDGLDPCKVEKQSIDTVPNNDASFXR 706

Query: 904  AFRFE-MDEEN-WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDS 961
             ++ + MD  N   P+ +  +  +D+    EL+ + D E   L  DR  L + I  S D 
Sbjct: 707  RYKIDLMDSSNSLKPSDI--DSGNDIIGDIELQRILDEEYNXLVQDREFLRSGIFGS-DP 763

Query: 962  SWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQK 1021
               LPVNL+R+I NAQ+ F VDP + +++   E+V  V  L ERL V+ G D L+ EAQ 
Sbjct: 764  ECHLPVNLRRVILNAQQIFNVDPNKATNLTIPEIVNGVKDLAERLVVIRGTDXLTKEAQA 823

Query: 1022 NATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            NAT  F   +RS FA KRV+ E+ LTR+A++WV+GE+ES+FL+S V
Sbjct: 824  NATXLFKSFVRSVFAVKRVVSEYXLTRDAWDWVLGEVESQFLRSAV 869


>gi|157741602|gb|ABV69506.1| RNA polymerase II largest subunit, partial [Verrucaria polysticta]
          Length = 999

 Score =  991 bits (2562), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/1020 (50%), Positives = 684/1020 (67%), Gaps = 43/1020 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC K+ A  D    + AL +RNPK R   I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKVKA-VDSEDLRYALSVRNPKKRFDLIWRLSQ 59

Query: 143  NKTKCEGG---DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
             +  C+     DE D   +  E+  K   GGCG  QP++   G+++ A+YK  RK +DD+
Sbjct: 60   KQNVCQADSPEDEQDSMAK--EKSGKVGHGGCGNAQPQIRKSGLELWAQYKP-RKGDDDE 116

Query: 200  EQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV--- 256
            E +PE    K  +   + L V + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV   
Sbjct: 117  ETVPE----KSQIWPAQALEVFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPVRPS 172

Query: 257  ----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
                      R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN
Sbjct: 173  ISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDN 232

Query: 307  ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
            ++    +A  +SGRPIKSI  RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GV
Sbjct: 233  DIANLDKAQHKSGRPIKSIRVRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGV 292

Query: 367  PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
            P SIA  LTYPETVT +NI RLK+LV  GP   PG   A+YIIR++ +R+DLRY K +S 
Sbjct: 293  PRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPG---ARYIIRENNERIDLRYHKDTSQ 349

Query: 427  HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 486
              L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNADFD
Sbjct: 350  IALKTGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFD 402

Query: 487  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
            GDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ +
Sbjct: 403  GDEMNLHVPQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462

Query: 547  DVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKGI 605
            +  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +    +  
Sbjct: 463  EEVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMISMVLPPALNLVRIDGKASQPPIERF 522

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
              AGD+ + +  GEL+ G   KK++GT +  ++H I+ E G + A  F    Q ++NYWL
Sbjct: 523  APAGDSGLFVADGELMFGLFNKKSVGTGSNGIVHTIFNEFGHETAMAFFNGAQTVINYWL 582

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+FE+K
Sbjct: 583  LHNGFSIGIGDTVPDIGTVEKIKYEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESK 642

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            V+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKRIPF
Sbjct: 643  VSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPF 702

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 703  GFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYI 762

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M  S F+K F
Sbjct: 763  QRRLVKALEEVTVKYDGTVRDSRGNIVQFVYGEDGLDGAHIESQRVDIIAMSDSAFEKLF 822

Query: 906  RFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIATSGD 960
            R ++ E       + Q+ ++    I    +++ +FD E  +L  DR  L    + ATS D
Sbjct: 823  RVDLMEPK---KLVWQDRLEQASEIHGDVDVQKLFDEEYDQLMEDRKFLRHIKKAATSAD 879

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
               PLP+N++R++  A+ TFK+    PSD+HP  V+  V +L +RL +V GEDP+S+EAQ
Sbjct: 880  EMMPLPMNVQRILNQARTTFKIQAGAPSDLHPTYVIPKVQQLLDRLVIVRGEDPISLEAQ 939

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
             NATL    LLRS  A KR++ E+ L R AF+ V+G IE+RF+++  +PGEM+G +AAQS
Sbjct: 940  NNATLLIKALLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKAAASPGEMVGVLAAQS 999


>gi|157741616|gb|ABV69513.1| RNA polymerase II largest subunit, partial [Verrucaria viridula]
          Length = 999

 Score =  991 bits (2561), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/1023 (50%), Positives = 687/1023 (67%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC K  A  D    + AL +RNPK R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKTKA-VDSEDLRYALTVRNPKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D E+P+ K K      GGCG  QP++   G+++ A+YK  RK +
Sbjct: 60   KQNVCQA----DSP-EDEEDPMAKEKSGKVGHGGCGNAQPQIRRSGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            DD+E +PE    K  +   + L V + ++DE    LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DDEETVPE----KSQIWPAQALEVFQHLTDETLDTLGLSLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK+LV  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPG---ARYIIRENNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKTGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEETRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +    
Sbjct: 460  LSREQVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMVSMVLPPALNLVRIDGKASQPPI 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  GEL+ G   KK++GT +  +IH I+ E G + A  F    Q ++N
Sbjct: 520  ERFAPAGDSGLFVSDGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVIN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + K K+ V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDIGTVEKIKSEVDKKKSEVERITQSAVAEELEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M  + F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDATVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDAAFE 819

Query: 903  KAFRFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E       + Q+ ++    I    +++ +FD E ++L  DR  L    + AT
Sbjct: 820  KLFRVDLMEPK---KLVWQDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHVKKAAT 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            S D   PLP++++R++  A+ TFK+    PSD+HP  V+  V +L ERL +V G+DP+S+
Sbjct: 877  SADEMMPLPMDVQRILNQARTTFKIQSGAPSDLHPTYVIPKVQQLLERLIIVRGDDPISL 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ NATL    LLRS  A KR++ E+ L R AF+ V+G IE+RF+++   PGEM+G +A
Sbjct: 937  EAQNNATLLIKALLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKAAANPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|397135826|gb|AFO11408.1| RNA polymerase I, partial [Tetrapisispora phaffii]
          Length = 871

 Score =  989 bits (2557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/882 (57%), Positives = 640/882 (72%), Gaps = 37/882 (4%)

Query: 204  EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------- 256
            EP +R   L  E +L + K IS  D   LG N ++ARPDWMIL VLP+PPPPV       
Sbjct: 9    EPEQR--VLNTEEILNIFKHISVHDSNTLGFNEQFARPDWMILTVLPVPPPPVRPSISFN 66

Query: 257  ---RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT +LA I++ N +L   E NGAP H I E   LLQFHIATY DN++ GQP+
Sbjct: 67   ESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHIATYMDNDIAGQPQ 126

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP + +DQ+GVP SIA  
Sbjct: 127  ALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIAKT 186

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD+G R+DLRY K++ D  L+ G+
Sbjct: 187  LTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDNGDRIDLRYSKRAGDIQLQYGW 243

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 244  KVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G RK+T RD FIE D  +N+L
Sbjct: 304  VPQSEETRAELSQLCSVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDCFIELDQLLNML 363

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLV 613
             W  D+DG +P P I+KP PLW+GKQ+ ++ IPK I+L R      D    +L+  D  +
Sbjct: 364  YWVPDWDGIIPTPAIIKPVPLWSGKQILSIAIPKGIHLQR-----FDEGTTMLSPKDNGM 418

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
             I  G+++ G + KKT+G+S G LIHV+  E GP    K  G+ Q +VN+W L N FS G
Sbjct: 419  LIIDGQIIFGVVDKKTVGSSNGGLIHVVTREKGPQICAKMFGNIQKVVNFWFLHNGFSTG 478

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGDTIAD  TM+ I +TI+ AK  V+ + K+AQ   L  + G T+ ESFE+ V + LN A
Sbjct: 479  IGDTIADGGTMKEITETIADAKRKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEA 538

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RD+AG  A+ +L++ NN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI FGFVDRTLP
Sbjct: 539  RDKAGRLAEVNLNDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLP 598

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+
Sbjct: 599  HFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAL 658

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN 913
            EDIMV YD T RNSLG+VIQF+YGEDG+D+  IE Q++D++    + F+K +R ++    
Sbjct: 659  EDIMVHYDSTTRNSLGNVIQFVYGEDGIDAGHIEKQSIDTIGGSDAAFEKRYRIDL---- 714

Query: 914  WNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL 965
             +PN+ L         E   D+K    L+ + D E ++L  DR +    +   G+ +W L
Sbjct: 715  MSPNHALDPSLLESGLEITGDVK----LQSILDTEYKQLVDDR-RFLRNVFIDGEPNWHL 769

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
            PVN++R+I NAQ+TF++D  +PSD+   EV+  V +LQE L V+ G+  +  EAQ +A  
Sbjct: 770  PVNIRRIIQNAQQTFRIDHTKPSDLTINEVIRDVARLQENLLVLRGKGKIIEEAQNDAIT 829

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
             F  L+RS  A +RVL+E+RLT++AF+WV+  IES+FL+S+V
Sbjct: 830  LFCCLVRSRLAVRRVLQEYRLTKQAFQWVLNNIESQFLRSIV 871


>gi|119643730|gb|ABL85585.1| RNA polymerase II largest subunit [Xanthoparmelia conspersa]
          Length = 1000

 Score =  989 bits (2557), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/980 (51%), Positives = 683/980 (69%), Gaps = 44/980 (4%)

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEID--VPGQDGEEPLKKNKGGCGAQQPKL 178
            F  A++ R+PK R   +   CK K  CE    +D   P    +EP K + GGCG  QP++
Sbjct: 40   FADAIRRRDPKKRFDMVWRLCKPKMICETTMALDDDSPSDKTKEP-KHDHGGCGNIQPEV 98

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              EG+++   +KAQ+   +++ Q PE    K+ +T +  L + + IS ED + +GL+  Y
Sbjct: 99   RREGLRLTGTWKAQKGDEENEGQQPE----KKPITPQMALNIFRHISTEDIRRMGLSNDY 154

Query: 239  ARPDWMILQVLPIPPPPV------------RPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
            ARP+WMI+ VLP+PPPPV            R  DDLT++L  IIR N N+RR E  G+PA
Sbjct: 155  ARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPA 214

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            H+++EF QLLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVD
Sbjct: 215  HVVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVD 274

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP +++D++GVP SIA  LTYPETVTPYNI++L +LV+ GP+  PG   AK
Sbjct: 275  FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG---AK 331

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            Y+IRD G+R+DLR+ K++ +  L+ G+KVERH+ DG+++ FNRQPS HK S+MGHR++++
Sbjct: 332  YVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGEYIXFNRQPSXHKESMMGHRVRVL 391

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            PYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E+RAE+ +L +VP+ IVSPQ N P+MGI
Sbjct: 392  PYSTFRLNLSVTTPYNADFDGDEMNLHVPQSQESRAELQQLCLVPRNIVSPQKNAPLMGI 451

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            VQDTL G  KI +RD F+ K+  MNI++W  ++DG +PQP ILKP P WTGKQ+ ++++P
Sbjct: 452  VQDTLCGIYKICRRDNFLTKEQVMNIMLWVPEWDGTIPQPAILKPTPRWTGKQIISMVLP 511

Query: 587  KQINLFRTAA-----WHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
            K +NL  T +     ++A +D+G++        I++GEL+ G L KK +GTS G +IH I
Sbjct: 512  KNLNLEETESGSVKDYYAPSDEGLM--------IQEGELMFGLLKKKNVGTSAGGVIHTI 563

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E G DAA  F    Q +VNYWLL N FSIGIGDTI D  T++ I   +++ K  V   
Sbjct: 564  FNENGHDAAMAFFNGAQVVVNYWLLHNGFSIGIGDTIPDGDTVKKIQSAVAEQKALVAKT 623

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
             + A +  LEP PG  +  +FE+KV   LN ARD+AG +AQ SL + N+   M  AGSKG
Sbjct: 624  TETAYNDELEPSPGMNIRMTFESKVMADLNKARDKAGGAAQDSLPDYNDFVQMSRAGSKG 683

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S INI+Q+ A VGQQ VEGKRIPFGF  RTLPHF+KDDY P SRGF+ENSYLRGLTP EF
Sbjct: 684  SGINIAQIMALVGQQAVEGKRIPFGFNYRTLPHFSKDDYSPTSRGFIENSYLRGLTPPEF 743

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E++ VKYDGTVR+S G+++QFLYGEDG+
Sbjct: 744  FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEVCVKYDGTVRDSRGNIMQFLYGEDGL 803

Query: 882  DSVWIESQTLDSLKMKKSEFDKAFRFEM---DEENWNPNYMLQEYIDDLKTIKELRDVFD 938
            D   IE Q +D L    ++F+K ++ ++    E+ W    +  ++I   K   +L+++FD
Sbjct: 804  DGAHIEKQKIDMLNQSDADFEKTYKVDLIDRSEKQWRGVLLRAQHI---KGDADLQNMFD 860

Query: 939  AEVQKLEADRYQLATEIATS---GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEV 995
             E ++L   R  + +  A S    DSS+ LP+N+ R+I  A + FK+     +D+ P  V
Sbjct: 861  EEYEELLKAREFVRSMYANSNKGADSSFQLPLNVARIINQAMRAFKIRKGDKTDLDPRHV 920

Query: 996  VEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVI 1055
            +  V  L  +L ++  +D LS EA++NATL F   LRS  A KR++  H LT  AF+ ++
Sbjct: 921  LNKVKDLMSKLILIRQKDALSREAEENATLLFKCQLRSKLAYKRLVLNHSLTEMAFDNIV 980

Query: 1056 GEIESRFLQSLVAPGEMIGC 1075
            G IES+FL + VAPGEM+G 
Sbjct: 981  GSIESKFLAAAVAPGEMVGV 1000


>gi|397135832|gb|AFO11411.1| RNA polymerase I, partial [Zygosaccharomyces rouxii]
          Length = 871

 Score =  988 bits (2555), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/891 (56%), Positives = 646/891 (72%), Gaps = 39/891 (4%)

Query: 195  KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP 254
            KN    + PE    ++ L  E +L + K IS ED   LG N ++ARP+WMIL VLP+PPP
Sbjct: 2    KNSGDNEEPE----QRVLNMEEILNIFKHISPEDSWKLGFNEEFARPEWMILTVLPVPPP 57

Query: 255  PV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYF 304
            PV          R  DDLT +LA I++ N +L   E NGAP H I E   LLQFH+ATY 
Sbjct: 58   PVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHTIEEAESLLQFHVATYM 117

Query: 305  DNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQL 364
            DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP +++DQ+
Sbjct: 118  DNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLDLDQV 177

Query: 365  GVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKS 424
            GVP SIA  LTYPE VTPYNI+RL  LV  GP+  PG   AKY+IRD+G R+DLRY K++
Sbjct: 178  GVPKSIAKTLTYPEVVTPYNIDRLTMLVRNGPNEHPG---AKYVIRDNGDRIDLRYSKRA 234

Query: 425  SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNAD 484
             D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M H++K+MPYSTFRLNLSVTSPYNAD
Sbjct: 235  GDIQLQYGWKVERHVIDNDPVLFNRQPSLHKMSMMAHKVKVMPYSTFRLNLSVTSPYNAD 294

Query: 485  FDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFI 544
            FDGDEMN+HVPQS ETRAE+ +L  VP+ IVSPQSN+P MG+VQDTL G RK+T RD FI
Sbjct: 295  FDGDEMNLHVPQSEETRAELSQLCAVPQQIVSPQSNKPCMGVVQDTLCGIRKLTLRDNFI 354

Query: 545  EKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG 604
            E    +N+L W  D+DG +P P ILKP+PLWTGKQ+ ++ IPK I+L R      D    
Sbjct: 355  ELGQVLNMLYWVPDWDGVIPTPAILKPKPLWTGKQLLSVAIPKGIHLQR-----FDEGTT 409

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            +L+  D  + +  G+++ G + KKT+G+S+G LIHV+  E GP        + Q +VNYW
Sbjct: 410  LLSPKDNGMLVIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQVCATLFSNIQKVVNYW 469

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
             L   FS GIGDTIAD +TM  I + I++AK  V+++ K+AQ   L  + G T+ ESFE+
Sbjct: 470  FLHCGFSTGIGDTIADGQTMRQITEAIAEAKVKVEDVTKEAQANLLTAKHGMTLRESFED 529

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
             V + LN ARD+AG  A+ +L+++N +K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI 
Sbjct: 530  NVVRYLNEARDKAGRLAEVNLNDTNFVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIA 589

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGY
Sbjct: 590  FGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGY 649

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+EDIMV YDGT RNSLG++IQF+YGEDGMD+  IE Q ++++      F++ 
Sbjct: 650  IQRRLVKALEDIMVHYDGTTRNSLGNIIQFIYGEDGMDAAHIEKQAVETIGGSDRNFERR 709

Query: 905  FRFEMDEENWNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIA 956
            +R ++     NP+Y L         E I DLK    L+ + D E ++L  DR +    I 
Sbjct: 710  YRIDL----LNPDYSLDPSLLESGSEIIGDLK----LQSLLDEEYKQLVEDR-KFLRRIF 760

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
              G+ +WPLPVN++R+I NAQ+TF++D  +PSD+   +VV  V +LQERL VV G   + 
Sbjct: 761  VDGEVNWPLPVNIRRIIQNAQQTFRIDRSKPSDVTIRDVVWGVKELQERLLVVRGNSRII 820

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
             EAQ++A   F  L+RS  AS+RV++E+RLT++AFEWV+  IE +FL+S+V
Sbjct: 821  KEAQEDAITLFCCLMRSRLASRRVIQEYRLTKQAFEWVLNNIEVQFLRSVV 871


>gi|157741506|gb|ABV69458.1| RNA polymerase II largest subunit, partial [Neocatapyrenium
            rhizinosum]
          Length = 999

 Score =  988 bits (2554), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/1023 (50%), Positives = 686/1023 (67%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D    + AL +RNPK R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEDLRYALTVRNPKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D E+P+ + K      GGCG  QP++   G+++ A+YK  RK +
Sbjct: 60   KQNNCQA----DSP-EDEEDPMAREKSSKVGHGGCGNAQPQIRRSGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            DD+E +PE    K  +   + L V + +SDE    LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DDEETVPE----KSQIWPAQALEVFQHLSDETLDTLGLSLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK+LV  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPG---ARYIIRENNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKTGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEETRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +    
Sbjct: 460  LSREQVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMISMVLPPALNLVRIDGKASQPPI 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  GEL+ G   KK++GT +  ++H I+ E G + A  F    Q ++N
Sbjct: 520  ERFAPAGDSGLFVSDGELMFGLFNKKSVGTGSNGVVHTIFNEFGHETAMAFFNGAQAVIN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + + K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDIGTVEKIKLEVDRKKAEVERITQSAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M  + F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDATVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDAAFE 819

Query: 903  KAFRFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K F  ++ E       + Q+ ++    I    +++ +FD E ++L  DR  L    + AT
Sbjct: 820  KLFHVDLMEPK---KLVWQDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHVKKAAT 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            S D   PLP+N++R++  A+ TFK+    PSD+HP  V+  V +L +RL +V G+DP+S+
Sbjct: 877  SADEMMPLPMNVQRILNQARTTFKIQSGAPSDLHPSYVIPKVQQLLDRLVIVRGDDPISL 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ NATL    LLRS  A KR++ E+ L R AF+ V+G IE+RF+++   PGEM+G +A
Sbjct: 937  EAQNNATLLIKALLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKAAANPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|157741612|gb|ABV69511.1| RNA polymerase II largest subunit, partial [Verrucaria weddellii]
          Length = 999

 Score =  988 bits (2554), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/1023 (50%), Positives = 686/1023 (67%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC K+ A  D    + AL +RNPK R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVRKLLETVCHNCGKVKA-VDSEDLRYALTVRNPKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D ++P+ K K      GGCG  QP++   G+++ A+YK  RK +
Sbjct: 60   KQNVCQA----DSP-EDEDDPMGKEKSGKVGHGGCGNAQPQIRRSGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            DD+E +PE    K  +   + L V + ++DE    LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DDEETVPE----KSQIWPAQALEVFQHLTDETLDTLGLSLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK+LV  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPG---ARYIIRENNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKTGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETRAE  +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEETRAEPSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD-ND 602
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +    
Sbjct: 460  LSREQVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMVSMVLPPALNLVRIDGKASQPAI 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  GEL+ G   KK++GT +  +IH I+ E G + A  F    Q ++N
Sbjct: 520  ERFAPAGDSGLFVSDGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVIN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + K K+ V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDIGTVEKIKSEVDKKKSEVERITQSAVAEELEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA V QQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVEQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M  + F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDATVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDAAFE 819

Query: 903  KAFRFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E       + Q+ ++    I    +++ +FD E ++L  DR  L    + AT
Sbjct: 820  KLFRVDLMEPK---KLVWQDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHVKKAAT 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            S D   PLP+N++R++  A+ TFK+    PSD+HP  V+  V +L ERL +V G+DP+S+
Sbjct: 877  SADEMMPLPMNVQRILNQARTTFKIQSGAPSDLHPTYVIPKVQQLLERLIIVRGDDPISL 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ NATL    LLRS  A KR++ E+ L R AF+ V+G IE+RF+++   PGEM+G +A
Sbjct: 937  EAQNNATLLIKALLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKAAANPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|83320428|gb|ABC02841.1| RNA polymerase II largest subunit, partial [Spizellomyces
           punctatus]
          Length = 792

 Score =  987 bits (2552), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/799 (61%), Positives = 598/799 (74%), Gaps = 22/799 (2%)

Query: 82  HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
           H++LAKP++H GF+  +  I+  VCF+C K+    ++ +F+QA  I++ K R   + + C
Sbjct: 1   HIDLAKPVYHAGFISKIKKILECVCFHCGKLKTGHNNERFRQARIIKDKKRRFHAVWEIC 60

Query: 142 KNKTKCEGGDEI--DVPGQDGEEPLKKN--KGGCGAQQPKLTIEGMKMIAEYKAQRKKND 197
           K K  CEG D    D    D E+P K     GGCG +QP    EG   +A Y    K  D
Sbjct: 61  KTKMVCEGSDTAPDDDDMMDMEDPYKSKPTHGGCGGRQPIFKKEGPLQLATYWKATK--D 118

Query: 198 DQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVR 257
           ++E   EP  + + LTAE+V  + ++IS++DC  LGLNP +ARP+WMI+ VLP+PP  VR
Sbjct: 119 EEESGQEP--KTEPLTAEKVHQLFQKISEDDCMSLGLNPDWARPEWMIITVLPVPPMAVR 176

Query: 258 PS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNE 307
           P+          DDLTH+L  I+  N  LR+ E  G+PAH+I+EF +LLQ+HIATY DN+
Sbjct: 177 PAVSMDGVATNQDDLTHKLRDIVLANSFLRKHETEGSPAHVINEFEKLLQYHIATYMDND 236

Query: 308 LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 367
           + G P + Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP ++ID++GVP
Sbjct: 237 IAGLPPSLQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEVGVP 296

Query: 368 WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 427
            SIA NLT+PETVTPYNI RL+E+V  GP       GAKY+I+DDGQR+DLRY ++  D 
Sbjct: 297 RSIARNLTFPETVTPYNIHRLQEMVRKGPLE---HGGAKYVIKDDGQRIDLRYNRRGGDI 353

Query: 428 HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDG 487
           HL+ GY+VERHL D D V+FNRQPSLHKMS+MGHR+K+MPYSTFR NLSVTSPYNADFDG
Sbjct: 354 HLQNGYRVERHLMDNDIVIFNRQPSLHKMSMMGHRVKVMPYSTFRXNLSVTSPYNADFDG 413

Query: 488 DEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
           DEMN+HVPQS+ET+AE++EL MVPK IVSPQ N PVMGIVQDTL G RK TKRDTF+ +D
Sbjct: 414 DEMNLHVPQSYETKAELMELCMVPKQIVSPQKNAPVMGIVQDTLCGIRKFTKRDTFLRRD 473

Query: 548 VFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF-RTAAWHADNDKGIL 606
             MN+LMW  D+DG VPQP ILKP PLWTGKQ+ +L+IP +IN+    +A+    DK   
Sbjct: 474 FVMNLLMWVPDWDGTVPQPAILKPVPLWTGKQIMSLVIPPKINVTGYHSAFDEQTDKDDG 533

Query: 607 TAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 666
           ++ D  V IE GELL+G LCKKT+G+S   +IHV   E GP+AA+ F   TQ +VN+WLL
Sbjct: 534 SSSDCKVLIENGELLTGILCKKTVGSSANGIIHVTMNEHGPEAAKAFFNGTQLVVNHWLL 593

Query: 667 QNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKV 726
           QN FSIGIGDTIAD  T + I  TIS AK  V  +I++AQ   LE  PG T+ ESFE+ V
Sbjct: 594 QNGFSIGIGDTIADRPTSDQITSTISNAKKEVTKIIEKAQSDKLEGLPGMTIRESFESLV 653

Query: 727 NQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 786
           N+ LN ARD AG SAQ SL E NN+K MV AGSKGS+INISQM+ACVGQQNVEGKRIPFG
Sbjct: 654 NKELNRARDNAGKSAQASLKEYNNVKQMVVAGSKGSYINISQMSACVGQQNVEGKRIPFG 713

Query: 787 FVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 846
           F  R+LPHFTKDD+ PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQ
Sbjct: 714 FKYRSLPHFTKDDHTPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQ 773

Query: 847 RRLVKAMEDIMVKYDGTVR 865
           RRLVKA+ED+M +YDGTVR
Sbjct: 774 RRLVKALEDLMAQYDGTVR 792


>gi|342180836|emb|CCC90312.1| putative RNA polymerase IIA largest subunit [Trypanosoma congolense
            IL3000]
          Length = 1756

 Score =  986 bits (2548), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/1270 (42%), Positives = 771/1270 (60%), Gaps = 83/1270 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
             P S  E+ KV  VQF I    +I+  +V  +EH ++ ERGKP  GG++D R+GT D + 
Sbjct: 7    LPPSHMELQKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGKPVRGGINDLRMGTTDFEF 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILAD---EDDHKF 121
             CETC     ECPGHFG++ELA+P+F+IG    VL +++ VC +C  +L +   +D HK 
Sbjct: 67   ACETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLQVLKCVCKSCGALLLNTRADDVHK- 125

Query: 122  KQALKIRNPKNRLKKILDACK-NKTKCEGGDEI-DVPGQDGEEPLK----------KNKG 169
                K+ N    L ++  A K  +TKC    ++ D  G DG               +   
Sbjct: 126  ----KLHNLTG-LSRLRQAAKMAETKCRMSTDLEDEVGDDGLNGGSFGGGGAVTGARATR 180

Query: 170  GCGAQQPKLT-IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDED 228
            GCGA QP+++   G+      KA     D +              A++V  VL R+SDED
Sbjct: 181  GCGASQPRVSRFYGIYPTLIVKAVHGDQDAEWH------------ADKVRQVLDRVSDED 228

Query: 229  CQLLGLNPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQ 279
             +L+G +P    P  ++L VLP+PPP VRP+         D+LTHQ+  I++ N  LR+ 
Sbjct: 229  ARLMGFDPLRCHPRDLVLTVLPVPPPQVRPAISFGGLKSDDELTHQIMAIVKRNNQLRKD 288

Query: 280  ERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGN 339
            + +   A I    A LLQ H+ATYF+N             + +KS+  RLK K GR+RGN
Sbjct: 289  KESDVQAAIDRSRA-LLQEHVATYFNNSSTYYKPTKVNDSKKLKSLTERLKGKYGRLRGN 347

Query: 340  LMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 399
            LMGKRVDFSARTVIT DP I++D++GVP+S+A+ LT+PE V   N +RL E V    +P 
Sbjct: 348  LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFVRREVYP- 406

Query: 400  PGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM 459
                 A YI   +G    L  L+  S   L +G  VERH+ +GD VLFNRQP+LH+MS+M
Sbjct: 407  ----SANYIHHPNGTITKLALLRDRSKVTLNIGDIVERHVINGDVVLFNRQPTLHRMSMM 462

Query: 460  GHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQS 519
            GHR++++ Y+TFRLNLS T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  
Sbjct: 463  GHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNK 522

Query: 520  NRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQ 579
            + P MGIVQD+LLG  ++T +DTF++K    ++ +W + +  ++P P +LKPRPLWTGKQ
Sbjct: 523  SAPCMGIVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLW--QLPIPAVLKPRPLWTGKQ 580

Query: 580  VFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIH 639
            VF+LI+P ++N   T      +DK      D+ V I +GELL G + K  +G + GSLIH
Sbjct: 581  VFSLILP-EVNHPTTP-----HDKPPFPHNDSSVMIRRGELLCGPITKGIVGAAPGSLIH 634

Query: 640  VIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVK 699
            VI+ E G D   +F+   Q +  ++LL   FS+G+ DT+AD  T+  +N+ + K + NV+
Sbjct: 635  VIFNEQGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADTDTLRQMNEVLVKTRENVE 694

Query: 700  NLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGS 759
             +   A +++L  + G T+++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGS
Sbjct: 695  KIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGS 754

Query: 760  KGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQ 819
            KG+ +NI Q+   VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P 
Sbjct: 755  KGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPH 814

Query: 820  EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGED 879
            EFFFH M GREGLIDTAVKTS+TGY+QR+L+KA+ED+   YDGTVRN+  ++IQF+YGED
Sbjct: 815  EFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANEELIQFMYGED 874

Query: 880  GMDSVWIESQTLDSLKMKKS-EFDKAFRFEMDEE-----NWNPNYMLQEYIDDLKTIKEL 933
            G+D   IE   L  L  + + E ++ +++E + +         NYM       L+   E 
Sbjct: 875  GLDGARIEGGQLFPLPFRDNKEMEQMYKYEYEADGTFTGKVGGNYMDPHVKKMLRADPEN 934

Query: 934  RDVFDAEVQKLEADR--YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMH 991
                  E ++L ADR   +   ++         LPVN  RLI NA+ T      + S++ 
Sbjct: 935  VRKLHGEYEQLMADREWSRKMLDLEDREKLKLNLPVNPGRLIQNARSTMG-KRSQVSNLS 993

Query: 992  PMEVVEAVDKLQERL-KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVL 1041
            P+ +++ V KLQE L K+ P           + LS +  ++A   FN+ LR   ASKRVL
Sbjct: 994  PITIIDHVRKLQEDLMKLFPSYHRDADRRITNVLSRQRIESALTLFNVHLRQLLASKRVL 1053

Query: 1042 KEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1101
            KE++L  +AFE+++ EI +++ QSL  PGE IG +AAQS GEPATQMTLNTFH AG+S+K
Sbjct: 1054 KEYKLNDKAFEYLLKEIRTKYHQSLATPGENIGAIAAQSCGEPATQMTLNTFHNAGISSK 1113

Query: 1102 NVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEV 1161
            NVTLGVPRL E++NV++  K  S++V L P  +  K  A+  Q  +EY TL S+T+  + 
Sbjct: 1114 NVTLGVPRLLELLNVSRHQKHASMTVTLFPPWDK-KRVAQKAQHLIEYCTLESITQRIQF 1172

Query: 1162 WYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKI------SPWLLRIELNREMMVDKKLS 1215
             YDPDP  T++E D + ++  +++ DE  A +++      SPW++R+EL+ +M+ DK L 
Sbjct: 1173 IYDPDPRHTVVEVDRDILELEWDVMDESDAEQRVREVEEGSPWVVRLELDVDMVTDKALD 1232

Query: 1216 MAAVAEKINQ 1225
            M  V + I +
Sbjct: 1233 MKDVKQAIQR 1242



 Score =  143 bits (361), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 137/423 (32%), Positives = 203/423 (47%), Gaps = 53/423 (12%)

Query: 1297 VDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1356
            ++A +T+SN + E+  +LGIEA R  +L ELR      G  +NYRH  IL DT+  RG+L
Sbjct: 1348 INATKTSSNKVPEVCSLLGIEAARYRMLTELREAYLAYGLNINYRHYTILVDTICQRGYL 1407

Query: 1357 MAITRHGINRNDT-GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGD 1415
            MA++R GINR+DT GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG  A +GTG 
Sbjct: 1408 MAVSRTGINRSDTSGPLMRCSFEETVKVLMAAASFGEHDPVRGVSANLVLGNQARVGTGL 1467

Query: 1416 CSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSP 1475
              L +N   L+ A+  +              A +P      + G+   G     NL+ S 
Sbjct: 1468 FDLIINMPALQQAVTQE-------------DAVAPGKNVNVYHGL---GSTLQQNLQSSM 1511

Query: 1476 V---TDAQFSPYVGGMAFSPTSSPG------YSPSSPGYSPSSP---GYSPTSPGYSPTS 1523
            V    +   +P+V   +      P        + +S   +PS P    +  ++  +S   
Sbjct: 1512 VYRPRENDATPFVNDASIFFHGGPAGGSSSAPATASAPLNPSLPYGGRFEASTVHHSQIY 1571

Query: 1524 PGYSPTSPGYSPTSPTYSPSSPGYSPTSP-AYSPTS---PSYSPTSPSYSPTSP---SYS 1576
            P  S T   YS    +YS     YS  S  A++P S   PS +  S  YS  S     YS
Sbjct: 1572 PSASVTE--YSAREVSYSQQ---YSVASASAFNPISTHLPSTAQVSADYSAMSSYHLQYS 1626

Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT-SPAYSPTSPSYSPTS 1635
              +PS   + P  S TS + +P++     TS  Y P++ + +   S AY+ T     P+ 
Sbjct: 1627 VAAPSMHTSFPR-SETSMA-TPSANREQSTSAPYMPSAMSSTALPSHAYASTEVDLLPSD 1684

Query: 1636 PSYSPTSPSYSPT-SPSYSPTSPSYSPTSPAYSPTSPGYSPT-----SPSYSPTSPTYSP 1689
             S S  S  Y PT SP+++  S  ++   P     + G +       S +Y PT+   S 
Sbjct: 1685 NSRS-QSALYVPTFSPAHAGASTHHN--EPGDRQRAGGTAAAEDEDLSVNYLPTTQVQSS 1741

Query: 1690 TSP 1692
              P
Sbjct: 1742 AVP 1744



 Score = 42.4 bits (98), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 72/165 (43%), Gaps = 12/165 (7%)

Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS-YSPTSPTYSPTS 1691
            P    +  ++  +S   PS S T   YS    +YS     YS  S S ++P S     T+
Sbjct: 1555 PYGGRFEASTVHHSQIYPSASVTE--YSAREVSYSQQ---YSVASASAFNPISTHLPSTA 1609

Query: 1692 PSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPS--SPTYS 1749
                  SA  S  L YS ++P +  + P S TS   +P+++    TS  Y PS  S T  
Sbjct: 1610 QVSADYSAMSSYHLQYSVAAPSMHTSFPRSETSM-ATPSANREQSTSAPYMPSAMSSTAL 1668

Query: 1750 PSSPYNAGGGNPDYSPSSPQYSPSAGYSPS-APGYSPSSTSQYTP 1793
            PS  Y       D  PS    S SA Y P+ +P ++ +ST    P
Sbjct: 1669 PSHAY--ASTEVDLLPSDNSRSQSALYVPTFSPAHAGASTHHNEP 1711


>gi|157741486|gb|ABV69448.1| RNA polymerase II largest subunit, partial [Clavascidium umbrinum]
          Length = 999

 Score =  985 bits (2546), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/1023 (50%), Positives = 686/1023 (67%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D  + + AL +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-LDSEELRYALSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGG------CGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D ++P+ K KGG      CG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQA----DAP-EDEDDPIAKEKGGKIRHGGCGNAQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +   + L V + ++DE  + LG+N  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEETVPE----KSQIWPAQALQVFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK+ V  GP   PG   A+YIIR+  +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEIHPG---ARYIIREHNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L++G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKVGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP ILKPRP WTGKQ+ ++++P  +NL R     + +  
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAILKPRPRWTGKQMVSMVLPPALNLVRIDGKASQSPC 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q ++N
Sbjct: 520  ERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVIN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDVGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAGS+ + SL +SNN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGSATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GY+QRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IE+Q +D + M    F+
Sbjct: 760  GYVQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIENQRVDVIAMSDDAFE 819

Query: 903  KAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E     W+      E   ++    +++ +FD E ++L  DR  L    + AT
Sbjct: 820  KQFRVDLMESKKLVWHDRL---EQASEIHGDVDVQKLFDEEYEQLLEDRKFLRYIKKAAT 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            S D   PLP+N+ R++  A+ TFK+    PSD+HP  V+  V +L ERL VV G D +SV
Sbjct: 877  SSDEMMPLPMNVVRILNQARTTFKIRSGGPSDLHPSYVIPKVRQLLERLTVVRGNDSISV 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF +++ +PGEM+G +A
Sbjct: 937  EAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFTKAIASPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|119643674|gb|ABL85582.1| RNA polymerase II largest subunit [Punctelia hypoleucites]
          Length = 1004

 Score =  984 bits (2543), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/981 (52%), Positives = 676/981 (68%), Gaps = 50/981 (5%)

Query: 121  FKQALKIRNPKNRLKKILDACKNKTKCEGGDEID--VPGQDGEEPLKKNKGGCGAQQPKL 178
            F  A++ R+PK R   +   CK K  CE    +D   P    +EP K + GGCG  QP++
Sbjct: 48   FADAVRRRDPKKRFDMVWRLCKPKMICETTMALDDEAPSDKTKEP-KHDHGGCGNIQPEV 106

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              EG+++   +KAQ+   +++ Q PE    K+ +T +  L + + IS ED + +GL+  Y
Sbjct: 107  RREGLRLTGTWKAQKGDEENEGQQPE----KKPITPQMALNIFRHISTEDIKRMGLSNDY 162

Query: 239  ARPDWMILQVLPIPPPPV------------RPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
            ARP+WMI+ VLP+PPPPV            R  DDLT++L  IIR N N+RR E  G+PA
Sbjct: 163  ARPEWMIITVLPVPPPPVRPSISVDGGNGPRGEDDLTYKLGDIIRANGNVRRCETEGSPA 222

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            H+++EF QLLQFH+A Y DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVD
Sbjct: 223  HVVNEFEQLLQFHVAAYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVD 282

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVIT DP +++D++GVP SIA  LTYPETVTPYNI++L +LV+ GP+  PG   AK
Sbjct: 283  FSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG---AK 339

Query: 407  YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
            Y+IRD G+R+DLR+ K++ +  L+ G+KVERH+ DGD+++FNRQPSLHK S+MGHR+++M
Sbjct: 340  YVIRDTGERIDLRHHKRAGEISLQYGWKVERHIVDGDYIIFNRQPSLHKESMMGHRVRVM 399

Query: 467  PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            PYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E+RAE+  L MVP  IVSPQ N P+MGI
Sbjct: 400  PYSTFRLNLSVTAPYNADFDGDEMNLHVPQSQESRAELANLCMVPLNIVSPQRNSPLMGI 459

Query: 527  VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
            +QDTL G  KI +RD F+ K+  MNI++W  D+DG +PQP I+KP P WTGKQ+ ++++P
Sbjct: 460  IQDTLCGIYKICRRDVFLTKEQVMNIMLWVPDWDGVIPQPAIIKPTPRWTGKQMISMVLP 519

Query: 587  KQINLFRTAAWHAD-----NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
              +NL R  A   D     ND G++        + +G ++ G L KK +GTS G +IH I
Sbjct: 520  PALNLERLDAKGEDPFTPVNDTGLI--------VLEGNVMFGLLSKKYVGTSAGGIIHTI 571

Query: 642  WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
            + E+G + A  F    Q +VNYWLL N FSIGIGDT+ D +T++ I D +   K  V  +
Sbjct: 572  YNELGWETALAFFNGAQTVVNYWLLHNGFSIGIGDTVPDPETVQKIQDAVDTKKAEVDAI 631

Query: 702  IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
             K AQ   LE  PG  + ++FE+KV   LN ARD+AG++ + SL + NN   M  AGSKG
Sbjct: 632  SKLAQGMRLEASPGMNIRQTFESKVMNSLNQARDQAGAATEDSLKDLNNAITMARAGSKG 691

Query: 762  SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
            S INI+QMTA VGQQ VEGKRIPFGF  R+LPHFTKDDY   SRGFVENSYLRGLTP EF
Sbjct: 692  STINIAQMTAIVGQQAVEGKRIPFGFKYRSLPHFTKDDYSAPSRGFVENSYLRGLTPTEF 751

Query: 822  FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
            FFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E++ VKYD TVR+S G+V+QF+YGEDG+
Sbjct: 752  FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDSTVRDSRGNVVQFIYGEDGL 811

Query: 882  DSVWIESQTLDSLKMKKSEFDKAF--RFEMDEEN-----WNPNYMLQEYIDDLKTIKELR 934
            D   IE+Q +D +    +  DKAF  RF++D  N     W    +LQ    +++   +L+
Sbjct: 812  DGAHIENQKVDIM----TASDKAFNDRFQVDIMNGDVSMWK-GRLLQAR--EIQGDTDLQ 864

Query: 935  DVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPME 994
            ++FD E + L   + +L   +    + S  LP+N+ R+I  AQK FK+     +D+    
Sbjct: 865  ELFDQEYENLRTSQ-RLIRNMGKGTEDSMQLPLNIGRIIDQAQKNFKIRRGDKTDLDARY 923

Query: 995  VVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWV 1054
             + AVD+L ERL +V GED +S EAQ NATL     LRS  A KR++ EH L R AF+ +
Sbjct: 924  ALTAVDQLLERLVIVRGEDAISKEAQDNATLLVKAQLRSRLAYKRLVLEHGLNRLAFDNI 983

Query: 1055 IGEIESRFLQSLVAPGEMIGC 1075
            IG +ESRF+ +  APGEM+G 
Sbjct: 984  IGAVESRFIAAHAAPGEMVGV 1004


>gi|157741540|gb|ABV69475.1| RNA polymerase II largest subunit, partial [Endocarpon diffractellum]
          Length = 999

 Score =  983 bits (2542), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/1023 (50%), Positives = 684/1023 (66%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D    + AL +RNPK R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEDLRYALTVRNPKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D E+P  + +      GGCG  QP++   G+++ A+YK  RK +
Sbjct: 60   KQNICQA----DSP-EDEEDPAARERSGKVGHGGCGNAQPQIRRSGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            DD+E +PE    K  +   + L V + ++DE    LGLN  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DDEETVPE----KSQIWPAQALEVFQHLTDETLDTLGLNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK+LV  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEAHPG---ARYIIRENNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKTGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  M+I++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +    
Sbjct: 460  LSREQVMSIMLWVPDWDGVIPQPAIFKPRPRWTGKQMISMVLPPALNLVRIDGKASQPPI 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  GEL+ G   KK++GT +  +IH I+ E G + A  F    Q ++N
Sbjct: 520  ERFAPAGDSGLFVSDGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVIN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDIGTVEKIKLEVDKKKAEVERITQSAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFE 819

Query: 903  KAFRFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E       + Q+ ++    I    +++ +FD E ++L  DR  L    + AT
Sbjct: 820  KLFRVDLMEPK---KLVWQDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAAT 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            S D   PLP+N++R++  A+ TFK+    PSD+HP  V+  V +L  RL +V G+DP+S+
Sbjct: 877  SADEMMPLPMNVQRILNQARTTFKIQSGAPSDLHPTYVIPKVQQLLGRLVIVRGDDPISL 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
             AQ NATL    LLRS  A KR++ E+ L R +F+ V+G IE+RF+++   PGEM+G +A
Sbjct: 937  GAQNNATLLIKALLRSRLAFKRLVMEYSLNRLSFDHVVGAIETRFIKAAANPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|397135965|gb|AFO11477.1| RNA polymerase I, partial [Lipomyces starkeyi]
          Length = 794

 Score =  983 bits (2542), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/804 (59%), Positives = 612/804 (76%), Gaps = 20/804 (2%)

Query: 197 DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIP---- 252
           D  E+L +P ER+Q L  + +L V K ISD+D + LGLN  YARP+W+I+ VLP+P    
Sbjct: 1   DKNEELDQP-ERRQ-LKPQEILNVFKHISDQDLERLGLNVDYARPEWLIITVLPVPPPPV 58

Query: 253 ------PPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
                     R  DDLT++LA I++ N N+RR ++ GAPAH+++EF  LLQFH+ATY DN
Sbjct: 59  RPSIAITEAARGEDDLTYKLADILKANANVRRCDQEGAPAHVLNEFESLLQFHVATYMDN 118

Query: 307 ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
           ++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP + +DQ+GV
Sbjct: 119 DIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLALDQVGV 178

Query: 367 PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
           P SIA  LTYPE VTPYNI +L +LV  GP+  PG   AKY+IRD G+R+DLRY K++ +
Sbjct: 179 PRSIARTLTYPEIVTPYNIHKLTQLVRNGPNEHPG---AKYVIRDTGERIDLRYHKRAGE 235

Query: 427 HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 486
             L+ G++VERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFD
Sbjct: 236 ITLQYGWRVERHIVDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFD 295

Query: 487 GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
           GDEMN+HVPQS ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+TKRD F+  
Sbjct: 296 GDEMNLHVPQSEETRAELTQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKLTKRDNFLTF 355

Query: 547 DVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGIL 606
           D  MN+L W  ++DG +PQP I KP+PLWTGKQ+F++ IPK INL R      D+   +L
Sbjct: 356 DQVMNVLYWVPNWDGVIPQPAIQKPKPLWTGKQMFSMAIPKGINLQRY-----DDKNTLL 410

Query: 607 TAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 666
           +  D  + IE GE++ G + KKT+G ++G LIH I  E GP AAR F+G TQ +VNYWLL
Sbjct: 411 SVRDNGMMIENGEVMFGIVDKKTVGATSGGLIHTIMREKGPIAARDFIGGTQTVVNYWLL 470

Query: 667 QNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKV 726
            N FSIGIGDTIADAKTM  I +TI++AK  V+ +I  AQ   L PEPG T+ ESFE KV
Sbjct: 471 HNGFSIGIGDTIADAKTMRNITNTIAQAKREVQQIILDAQANRLPPEPGMTLRESFEQKV 530

Query: 727 NQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 786
           ++VLNTARD AG SA+ SL+E+NN+K MV AGSKGSFINISQM+ACVGQQ VEGKR+PFG
Sbjct: 531 SKVLNTARDTAGRSAETSLTEANNVKQMVVAGSKGSFINISQMSACVGQQMVEGKRVPFG 590

Query: 787 FVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 846
           F  RTLPHFTKDDY PESRGF+ENSYLRGLTPQEFFFHAM GREG+IDTAVKT+ETGYIQ
Sbjct: 591 FSYRTLPHFTKDDYSPESRGFIENSYLRGLTPQEFFFHAMAGREGIIDTAVKTAETGYIQ 650

Query: 847 RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFR 906
           RRLVKA+ED+ VKYDGTVRNSLGD++QF+YGEDG+D+ ++E Q++DS+      F++ ++
Sbjct: 651 RRLVKALEDVSVKYDGTVRNSLGDILQFVYGEDGLDATYVEKQSVDSMSGSNDRFEQRYK 710

Query: 907 FEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLP 966
            ++ +  W+    L E  +D+    E++ V D E ++L  DR  L   +  +G+ +WPLP
Sbjct: 711 IDLMDAMWSLKPSLLECGNDIIGDVEVQQVLDEEYEQLWQDRKFLRDFVFKNGEDAWPLP 770

Query: 967 VNLKRLIWNAQKTFKVDPRRPSDM 990
           VN+ R+I N+Q+ F +D ++ SD+
Sbjct: 771 VNIHRIIRNSQQIFHLDRQKASDL 794


>gi|111278791|gb|ABH09093.1| RNA polymerase II largest subunit [Staurothele frustulenta]
          Length = 1010

 Score =  983 bits (2540), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1026 (50%), Positives = 688/1026 (67%), Gaps = 44/1026 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILA-DEDDHKFKQALKIRNPKNRLKKILDAC 141
            ++LA P++H GF+  V  I+ +VC NC KI A D      + AL +R+ K R + I    
Sbjct: 2    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKAVDVSSEDLRYALSVRDRKKRFELIWRLS 61

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKG------GCGAQQPKLTIEGMKMIAEYKAQRKK 195
            + +  C+     D P +DG++   K+KG      GCG  QP +   G+++ A+YK  RK 
Sbjct: 62   QKQNVCQA----DAP-EDGDDQGAKDKGVKTRHGGCGNAQPVIRKTGLELWAQYKP-RKG 115

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
            +D++E +PE    K  +   + L V + ++DE  + LGL+  +ARP+WMILQ LP+PPPP
Sbjct: 116  DDEEESVPE----KSQIWPAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLPVPPPP 171

Query: 256  V-------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT 302
            V             R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+AT
Sbjct: 172  VRPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVAT 231

Query: 303  YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
            Y DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D
Sbjct: 232  YMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLD 291

Query: 363  QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK 422
            ++GVP SIA  LTYPETVT +N E+LK+LV  GP   PG   A+YIIR+ G+R+DLR+ K
Sbjct: 292  EVGVPRSIARTLTYPETVTRFNAEKLKQLVVNGPERHPG---ARYIIREQGERIDLRFHK 348

Query: 423  KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 482
             ++   L+ G+KVERH+ DGD +LFNRQPSL        R+++MPYSTFRLNLSVT+PYN
Sbjct: 349  NTNSITLKAGWKVERHIMDGDVILFNRQPSLXXXXXXXXRVRVMPYSTFRLNLSVTTPYN 408

Query: 483  ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 542
            ADFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD 
Sbjct: 409  ADFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDV 468

Query: 543  FIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN- 601
            F+ ++  MNI++W  D+DG +PQP I KPRP WTGKQV ++++P  +NL R     +   
Sbjct: 469  FLSREEVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQVISMVLPPALNLVRIDGKPSQPP 528

Query: 602  DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
             +    AGD+ + I  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q ++
Sbjct: 529  GERFAPAGDSGLFISDGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMSFFNGAQTVI 588

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+
Sbjct: 589  NYWLLHNGFSIGIGDTVPDVSTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRET 648

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGK
Sbjct: 649  FESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGK 708

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDY    +GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 709  RIPFGFKYRTLPHFAKDDYSAAPKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 768

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F
Sbjct: 769  TGYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAF 828

Query: 902  DKAFRFEMDEENWNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEI 955
            +K FR ++ E    P  ++ Q+ +D    I    +++ +FD E ++L  DR  L    + 
Sbjct: 829  EKQFRVDLME----PKKLVWQDRLDQASEIHGDVDVQKMFDEEYEQLAEDRRFLRHIKKA 884

Query: 956  ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPL 1015
            AT+ D   PLP+N+ R++  A+ TFK+     SD+HP   +  V +L +RL +V GED +
Sbjct: 885  ATTSDEMMPLPMNIVRILNQARTTFKIQSGATSDLHPSYAIPKVKQLLDRLVIVRGEDRI 944

Query: 1016 SVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGC 1075
            S+EAQ+NATL     LRS  A KR++ E+ L+R AF+ V+G +E+RF+++  +PGEM+G 
Sbjct: 945  SLEAQENATLLIKAQLRSRLAFKRLVMEYSLSRLAFDHVVGAVETRFIKATASPGEMVGV 1004

Query: 1076 VAAQSI 1081
            +AAQSI
Sbjct: 1005 LAAQSI 1010


>gi|157741500|gb|ABV69455.1| RNA polymerase II largest subunit, partial [Endocarpon pusillum]
          Length = 999

 Score =  981 bits (2537), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/1023 (50%), Positives = 685/1023 (66%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D    + AL +RNPK R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEDLRYALTVRNPKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQ------QPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D E+P  K +GG          QP++   G+++ A+YK  RK +
Sbjct: 60   KQNICQA----DSP-EDEEDPAAKERGGKVGHGGCGNAQPQIRRSGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            DD+E +PE    K  +   + L V + ++DE  + LGLN  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DDEETVPE----KSQIWPAQALEVFQHLTDETLETLGLNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI +LK+LV  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEAHPG---ARYIIRENNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKTGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +    
Sbjct: 460  LSREQVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMISMVLPPALNLVRIDGKASQPPI 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  GEL+ G   KK++GT +  +IH I+ E G + A  F    Q ++N
Sbjct: 520  ERFAPAGDSGLFVSDGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVIN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YW L N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWFLHNGFSIGIGDTVPDRGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL +SNN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFE 819

Query: 903  KAFRFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E       + Q+ ++    I    +++ +FD E ++L  DR  L    + AT
Sbjct: 820  KLFRVDLMEPK---KLVWQDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHIKKAAT 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            S D   PLP+N++R++  A+ TFK+    PSD+HP   +  V +L +RL +V G+DP+S+
Sbjct: 877  SADEMMPLPMNVQRILNQARTTFKIQSGAPSDLHPTYAIPKVQQLLDRLVIVRGDDPISL 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQKNATL    LLRS  A KR++ E+ L R AF+ V+G IE+RF+++   PGEM+G +A
Sbjct: 937  EAQKNATLLIKALLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKAAANPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|157741594|gb|ABV69502.1| RNA polymerase II largest subunit, partial [Hydropunctaria maura]
          Length = 999

 Score =  981 bits (2536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/1024 (50%), Positives = 689/1024 (67%), Gaps = 51/1024 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D  + + AL +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKAI-DSEELRYALSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D E+ L K K      GGCG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQA----DAP-EDDEDSLAKEKMGKARHGGCGNAQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            +++E +PE   R Q   A+  L V + ++D+  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  EEEETVPE---RSQIWPAQ-ALQVFQHLTDDTLETLGLSLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK+ V  GP   PG   A+YIIR+  +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTQFNISRLKQFVTNGPEMHPG---ARYIIREHNERIDLRYHKN 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +++  L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TAEITLKTGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + +D  MNI++W  D+DG +PQP I+KPRP WTGKQ+ ++++P  +NL R     +    
Sbjct: 460  LSRDEVMNIMLWVPDWDGVIPQPAIVKPRPRWTGKQMISMVLPPALNLVRIDGKASQPPA 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  G+L+ G   KK++GT +  +IH ++ E G +AA  F    Q LVN
Sbjct: 520  ERFAPAGDSGLFVADGKLMFGLFNKKSVGTGSNGIIHTVFNEFGHEAAMAFFNGAQTLVN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + + K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDVGTVEKIKSEVDRKKTEVERITQSAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGK 
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKG 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSHDAFE 819

Query: 903  KAFRFEMDEENWNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIA 956
            K +R ++ E    P  ++ Q+ ++    I    +++ +FD E ++L  DR  L    + A
Sbjct: 820  KQYRVDLME----PKKLVWQDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHIKQAA 875

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            TS D   PLP+N+ R++  A+ TFK+    PSD+HP  V+  V +L +RL VV GEDP+S
Sbjct: 876  TSSDEMMPLPMNVVRILNQARTTFKIQAGAPSDLHPSYVIPKVKQLLDRLVVVRGEDPIS 935

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
            VEAQ+NATL     LRS  A KR++ E+ L R AF+ V+G +E+RF+++  +PGEM+G +
Sbjct: 936  VEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAVETRFIKAAASPGEMVGVL 995

Query: 1077 AAQS 1080
            AAQS
Sbjct: 996  AAQS 999


>gi|157741532|gb|ABV69471.1| RNA polymerase II largest subunit, partial [Placopyrenium bucekii]
          Length = 999

 Score =  979 bits (2532), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/1028 (50%), Positives = 684/1028 (66%), Gaps = 59/1028 (5%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D  + + A  +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEELRYAHSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGG------CGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P  D ++P+ K KGG      CG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQA----DSP-DDEDDPIAKEKGGKIRHGGCGNVQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +   + L V + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEETVPE----KSQIWPAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSITVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NIERLK+LV  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNIERLKQLVTNGPQMHPG---ARYIIRENNERIDLRYHKN 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            ++D  L  G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TADIALRTGWKVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ NRP+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNRPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R      D   
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPPALNLVRI-----DGKP 514

Query: 604  G------ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHT 657
            G         AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    
Sbjct: 515  GQPPVERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGA 574

Query: 658  QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
            Q +VNYWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  
Sbjct: 575  QTVVNYWLLHNGFSIGIGDTVPDVGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMN 634

Query: 718  MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
            + E+FE+KV   LN ARD+AG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+
Sbjct: 635  VRETFESKVAAALNGARDQAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQS 694

Query: 778  VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
            VEGKRIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAV
Sbjct: 695  VEGKRIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 754

Query: 838  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
            KT+ETGYIQRRLVKA+E++ VKYDGTVR+S G+V+QF+YGEDG+D   IESQ +D + M 
Sbjct: 755  KTAETGYIQRRLVKALEEVTVKYDGTVRDSRGNVVQFIYGEDGLDGAHIESQRVDVIAMS 814

Query: 898  KSEFDKAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLAT- 953
             + F+K FR ++ E     W+      E   ++    +++ +FD E ++L  DR  L + 
Sbjct: 815  DAAFEKQFRVDLMEPKKLVWHDRL---EQASEIHGDVDVQKLFDEEFEQLAEDRKFLRSI 871

Query: 954  -EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGE 1012
             + A S D   PLP+N+ R++  A+ TFK+     SD+HP  V+  V +L +RL +V GE
Sbjct: 872  NQAANSADEMMPLPMNVVRILNQARTTFKIQAGAASDLHPSYVIPKVRQLLDRLVIVRGE 931

Query: 1013 DPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEM 1072
            D +S+EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF +S V+PGEM
Sbjct: 932  DRISLEAQENATLLIKAQLRSRLAFKRLVLEYGLNRLAFDHVVGAIETRFTRSTVSPGEM 991

Query: 1073 IGCVAAQS 1080
            +G +AAQS
Sbjct: 992  VGVLAAQS 999


>gi|157741498|gb|ABV69454.1| RNA polymerase II largest subunit, partial [Endocarpon psorodeum]
          Length = 999

 Score =  978 bits (2529), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/1023 (50%), Positives = 684/1023 (66%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D    + AL +RNPK R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEDLRYALTVRNPKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQ------QPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D E+P+ K +GG          QP++   G+++ A+YK  RK +
Sbjct: 60   KQNICQA----DSP-EDEEDPVAKERGGKVGHGGCGNAQPQIRRSGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            DD+E +PE    K  +   + L V + ++DE    LGLN  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DDEETVPE----KSQIWPAQALEVFQHLTDETLDTLGLNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKS+ +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSLRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI +LK+LV  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEAHPG---ARYIIRENNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKTGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +    
Sbjct: 460  LSREQVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMISMVLPPALNLVRIDGKASQPPI 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  GEL+ G   KK++GT +  +IH I+ E G + A  F    Q ++N
Sbjct: 520  ERFAPAGDSGLFVSDGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVIN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YW L N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWFLHNGFSIGIGDTVPDIGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL +SNN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFE 819

Query: 903  KAFRFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E       + Q+ ++    I    +++ +FD E ++L  DR  L    + AT
Sbjct: 820  KLFRVDLMEPK---KLVWQDRLEQALEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAAT 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            S D   PLP+N++R++  A+ TFK+    PSD+HP   +  V +L +RL +V G+DP+S+
Sbjct: 877  SADEMMPLPMNVQRILNQARTTFKIQSGSPSDLHPTYAIPKVQQLLDRLVIVRGDDPISL 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ NATL    LLRS  A KR++ E+ L R AF+ V+G IE+RF+++   PGEM+G +A
Sbjct: 937  EAQNNATLLIKALLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKAAANPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|407039913|gb|EKE39890.1| DNA-directed RNA polymerase II large subunit, putative [Entamoeba
            nuttalli P19]
          Length = 1635

 Score =  978 bits (2528), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 614/1700 (36%), Positives = 929/1700 (54%), Gaps = 181/1700 (10%)

Query: 11   EVAKVRMVQFGILSPDEIRQMSVVQI-EHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
            E  +V+ ++F +LS ++IR+M V +I E    +  GKP  GGL+DPR+G  ++  +C+TC
Sbjct: 7    ETKRVKQIKFTLLSSEQIRKMGVCKITESTSVSSDGKPVLGGLADPRMGPFEKGEECQTC 66

Query: 70   TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRN 129
                 ECPGHFG++EL +P+++  +MK +L +++ VC  C +I    D+       +++N
Sbjct: 67   RGTRTECPGHFGYIELTQPVYNAIYMKYILHVLKCVCPICKRIYCHGDE-------RVKN 119

Query: 130  PKN----RLKKILDAC-KNKTKC----EGGDEIDVPGQDGEEPLKKNKGG--CGAQQPKL 178
             K+    RLK+I +   KN   C    E   ++D   Q+ EE  +    G     + PKL
Sbjct: 120  IKSTGEERLKEIYEFIHKNYKACGVLSEKKKDLD-KHQNNEEEEQNPCNGPIVDYELPKL 178

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              E  K+    K   K N++ +  P              L + K ++DED ++LG +P  
Sbjct: 179  KSEN-KLEIRRKNGIKTNEENDFKPRDA-----------LAIFKDMTDEDVRVLGFDPID 226

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
              P +MI  ++P+PPP VRPS          DDLT     +I  NE L+  E N     +
Sbjct: 227  CHPKFMIFTLIPVPPPCVRPSIVSEGAKESKDDLTVLYENVITANERLK--EENQKCEGV 284

Query: 289  ISEFAQLLQFH-IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
               + +L++   I      +    P    R  +  KSI  RL +K+GR+R NLMGKRVDF
Sbjct: 285  SEYYNKLMELQTICAKISMKNVKLPETMLRK-KNFKSIEERLSSKQGRLRLNLMGKRVDF 343

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVI+PDP +++D++GVP  +A  LT+PE VT +N E+L++LV  G +  PG   A  
Sbjct: 344  SARTVISPDPNLSMDEVGVPTGVAKILTFPEVVTQHNKEKLQKLVNAGMNDYPG---AFM 400

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            + R +GQ     Y    S+  +++G  V R++ +GD+V+FNRQPSLH+MS+MGH+++++P
Sbjct: 401  LERKNGQT----YRLNGSEKIIDIGDTVHRYIMNGDYVIFNRQPSLHRMSMMGHKVRVLP 456

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            +STFR+NL  T+PYNADFDGDEMN+HVPQ+ E RAEV  LM+ P  I++PQ N P+MGIV
Sbjct: 457  FSTFRMNLCDTTPYNADFDGDEMNLHVPQTLEARAEVATLMLTPTQIITPQDNGPIMGIV 516

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDT  G   ITKR+TFIE+ VF NIL   ++FDG VP P ILKP P WTGKQVF  I+P 
Sbjct: 517  QDTQCGSYLITKRETFIEQLVFYNILQCLDNFDGTVPIPAILKPIPKWTGKQVFTQILP- 575

Query: 588  QINLFRTAAWHADNDKGILTAG----DTLVRIEKGELLSGTLCKKT-LGTSTGSLIHVIW 642
             IN  R   W     K +L  G    D+ V I  G  L G+L  K+  G +   +I  I+
Sbjct: 576  TINFHR-GNWSI---KELLKRGPAVADSDVYILDGVHLVGSLRNKSEFGKNRSGIIQTIF 631

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
            ++ G +A + F   TQ  VN W+L   F++G+GD +      ++I   + K+K      +
Sbjct: 632  KDKGMEATKVFFNKTQATVNSWILTRGFTVGVGDIVVPQSVHDSIRANVEKSKKEAVKFL 691

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
                D  ++ + G TM E+ E+++  +L   ++E  S   KSL + NNL AMV +GSKGS
Sbjct: 692  SHQHDDEIKVQAGNTMFENLESELGSLLEKLKNECDSITTKSLKKDNNLLAMVDSGSKGS 751

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
              NI QM A VG+Q +   RIPFGF  RTLPH+ K+DYG  SRGFVENSY+ GL+PQEFF
Sbjct: 752  TTNILQMVAFVGKQEINNLRIPFGFYKRTLPHYWKEDYGFVSRGFVENSYVMGLSPQEFF 811

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAM GR+G+IDTAVKTS+TGYIQR++VK MED+  KYD TVR S GD+++F+YG DG+D
Sbjct: 812  FHAMAGRQGIIDTAVKTSDTGYIQRKMVKCMEDVQCKYDRTVRRSSGDMVEFMYGGDGVD 871

Query: 883  SVWIESQTL--------DSLKMKKSEFD-----KAFRFEMDEENWNPNYMLQEYIDDLKT 929
            ++  E+Q          D+ +   +E+D     + +++++++E  +   +L E I +   
Sbjct: 872  ALMCETQKYIYCNDSKPDNFEGSINEYDTLKMNELYKWDLNDEKLSE--LLDEDIYNKLF 929

Query: 930  IKELRDVFDAEVQKLEADRYQLATEIATSGD---SSWPLPVNLKRLIWNAQKTFKVDPRR 986
              E + +FD E Q++  +R +L      S D       + VN  R I N      +   +
Sbjct: 930  SDEYQTLFDNEFQRILDERAELYQPWRRSLDLKPCDIHIVVNFARQIDNVIAARYLPKSQ 989

Query: 987  PSDMHPMEVVEAVDKLQERLKVVPG--EDPLSVEAQKNATLFFNILLRSTFASKRVLKEH 1044
             S++ P  V+E  + L + L  +     D    E  K+A   F  LL  T +SK+ L +H
Sbjct: 990  RSNLDPKYVIERENALIKELSSIGAVKNDKFDEERFKDALGSFGKLLHCTLSSKQCLIQH 1049

Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
             L++E+F+ ++  I++ + +S + PGEM+G +AAQSIG PATQMTLNTFH+AG+S+ +VT
Sbjct: 1050 HLSKESFDDLMDRIKNIYERSFINPGEMVGSIAAQSIGAPATQMTLNTFHHAGISSASVT 1109

Query: 1105 LGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERA----KNVQCALEYTTLRSVTEATE 1160
             GVPRL+E++NV+K  KTPS++V+L    N T+E      K +   + YT L+ + +  E
Sbjct: 1110 EGVPRLKELLNVSKTPKTPSMNVYL---TNDTRESMVDLDKELNKTIPYTKLKDLIDNVE 1166

Query: 1161 VWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAA-- 1218
            +W+DPD   ++IEED EF+  + E+  E+I PE    W +R+      MV   +   +  
Sbjct: 1167 IWFDPDIANSVIEEDREFINDFIEV--EEIKPEDYCKWTIRLVFGYNKMVSMGVDSDSDI 1224

Query: 1219 VAEKINQEFDDDLTCIFNDDN----ADKLILRIRI----MNDEAPKGELNDE---SAEDD 1267
            +  KI + F D L    + +N      K+++ IR     +++ +    L DE   S E  
Sbjct: 1225 LRVKIKELFKDALVIPSDSNNIVNGTVKIVVHIRFRVGSISECSNIDHLTDEVDKSVEAV 1284

Query: 1268 VFLKKIESNMLTEMALRGV--------------------------------------NLL 1289
             + K     +L  + + G+                                      N+ 
Sbjct: 1285 AYYKSKLDELLRTVVISGIEGITKVIIPQKPKNTIVVDPETKMLRDQLQWVVFTEGSNMA 1344

Query: 1290 AVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDT 1349
             +   ++VD  +T +N++ E    LGIEA R  L  E  ++ +  GSYVN+RHLA++ D 
Sbjct: 1345 GLAECDNVDFYKTVTNNVYETFLYLGIEAGRTQL--EAELIKTLSGSYVNFRHLALMADV 1402

Query: 1350 MTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLA 1409
            MT+ G +    R G++R   G + R SFE+T++    AA F+ESD L G+++NI++GQ  
Sbjct: 1403 MTFTGRIQPFNRMGLSRGRAGVITRASFEQTLEQFRRAAAFSESDILNGISQNILMGQRT 1462

Query: 1410 PIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSP 1469
              GTG  ++ L+ + LK A  +   S+ E                 + DG          
Sbjct: 1463 VAGTGAFTVLLDIDSLK-ASNIDENSFSE----------EEADKKAFIDGF--------- 1502

Query: 1470 NLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPT 1529
                        SP    +  SPT++    P   G+SPS      T P ++  SP  + +
Sbjct: 1503 ----------DVSPIRTHLVMSPTNTN--KPKPMGFSPSPVSPRKTHPQFATPSPFITSS 1550

Query: 1530 SPGYSPTSPTYSPS-SPGYSPTSPAYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTS 1586
            SP  SP    ++P  S G SP +PA    S     +SP ++   +SP  +P    +  ++
Sbjct: 1551 SPRSSPMLMQFTPRFSSGPSPYNPATGALSKPAFLSSPMFAGKQSSPYNNPNPSPFLGST 1610

Query: 1587 PSYSP-TSPSYSPTSPSYSP 1605
            P++   +SP  + +SPS  P
Sbjct: 1611 PAFQGISSPFINYSSPSIFP 1630


>gi|357289799|gb|AET73112.1| RNA polymerase II largest subunit [Phaeocystis globosa virus 12T]
 gi|357292599|gb|AET73935.1| RNA polymerase II largest subunit [Phaeocystis globosa virus 14T]
          Length = 1512

 Score =  978 bits (2528), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 569/1501 (37%), Positives = 864/1501 (57%), Gaps = 145/1501 (9%)

Query: 13   AKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            +K+  +QF +LSP EI++ SV +I + +T    KP  GGL DPR+G ++    C T   +
Sbjct: 10   SKIIGIQFSLLSPHEIQKGSVAEIVNRDTYINNKPVLGGLFDPRMGILEPGFICPTDGLD 69

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKN 132
              + PG+FGH+ LA+P+F+I ++ T++ I+R VC  CSK+L D+D + +   L   N   
Sbjct: 70   YIQTPGYFGHINLARPVFYIQYLTTIMKILRCVCIKCSKLLIDKDKYSY---LLNCNSDE 126

Query: 133  RLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK-MIAEY-- 189
            R  K+      K +C            GE      K GCG  QPKL  EG+  +IAE+  
Sbjct: 127  RWNKVFALASKKKRC------------GECC----KNGCGCLQPKLKKEGLATLIAEWNE 170

Query: 190  KAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL 249
            K +  KN +  +     +    L  E V+ +L++ISDED   +G +  ++RP+WMI Q +
Sbjct: 171  KEEEIKNYEFSKDDGTGKLIMKLIPEIVIKILRKISDEDVNFMGFSSIWSRPEWMICQTM 230

Query: 250  PIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFH 299
             +PPP VRPS          DDLTH +  II+ N+ L+ +    A +++I +++ +LQ++
Sbjct: 231  AVPPPAVRPSVKHDSQQRSEDDLTHIIVNIIKANKTLQEKIEQNANSNVIDDWSTVLQYY 290

Query: 300  IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTI 359
            +AT  DN++PG     QRSGRP+K+I  RL  K GR+RGNLMGKRVDFSAR+VITPDP +
Sbjct: 291  VATLVDNKIPGVAAVAQRSGRPLKAIKDRLNGKGGRVRGNLMGKRVDFSARSVITPDPNL 350

Query: 360  NIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLR 419
            +I +LGVP  IA NLT P TV   N + L   ++ GP   PG   AK   + +G  + LR
Sbjct: 351  SISELGVPLKIAKNLTKPVTVNSRNKQYLMTFIKNGPDVYPG---AKIYEKKNGDCISLR 407

Query: 420  YLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS-TFRLNLSVT 478
            Y+ + S   LE G KV RH+ +GD VLFNRQP+LH+MS+M H+ ++M    TFR+N++ T
Sbjct: 408  YVDRDS-IVLEDGDKVHRHVLNGDPVLFNRQPTLHRMSMMCHKARVMMQGDTFRMNVADT 466

Query: 479  SPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKIT 538
             PYNADFDGDEMN+H+PQ  E+  E+  L  V   I+SP +N+ ++GI QD+LL     +
Sbjct: 467  KPYNADFDGDEMNLHMPQDEESETELRLLATVKNNIISPANNKSIVGIFQDSLLSTYLFS 526

Query: 539  KRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWH 598
            + D   +    MN+LM  +  D      T    +   +  ++ + I+P     ++T  + 
Sbjct: 527  REDITFDSRTAMNLLMHHKKIDLNAIDFT----KDRISSFEILSQILPNFSLKYKTKRFK 582

Query: 599  ADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQ 658
             D+D       + ++ I  G ++ G + K  LG +T  L+  I+ + G DA+++F+   Q
Sbjct: 583  DDDD---YKTSNNVLEINNGTIVRGHIEKGILGDTTRGLLQRIYNDFGVDASQEFIDSLQ 639

Query: 659  WLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTM 718
             +V  ++  + +S+GI D IAD  T + I + I++ K+ VK+LI +      E + G+  
Sbjct: 640  DIVTEYMKIHGYSVGISDLIADKDTNQKIVEVITQKKSEVKSLIDETHLGIFENKTGKPN 699

Query: 719  MESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNV 778
            +E FE +VN +LN A  EAG   + +L ++N    MV AGSKGS +NISQM +C+GQQNV
Sbjct: 700  VEEFETQVNNILNKASFEAGKLGRTNLDKNNRFVIMVNAGSKGSDLNISQMISCLGQQNV 759

Query: 779  EGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 838
            +GKRIP+G+ +RTLPHFTK D  PE+RGFVE+S++ GL P+E FFHAMGGR GLIDTAVK
Sbjct: 760  DGKRIPYGYENRTLPHFTKFDDSPEARGFVESSFIGGLRPEELFFHAMGGRVGLIDTAVK 819

Query: 839  TSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
            TS TGYIQRRL+K+MEDIM+ YD TVRN+   +IQ+ YG+DG+D + +ESQ L  + M  
Sbjct: 820  TSTTGYIQRRLIKSMEDIMIGYDMTVRNNKNKIIQYSYGDDGIDPIKVESQGLGFITMTI 879

Query: 899  SE--------------------FDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFD 938
             E                    + K      ++E    +   +EYID    I E R V  
Sbjct: 880  EEIYGHYQMPTDKTKDSVYATLYTKTAYTRFNKEKTAMDKKCKEYID---YIIEARKVI- 935

Query: 939  AEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
              V+K+  + ++           +  LPV+   +I N       +     D+ P+E+ + 
Sbjct: 936  --VEKVLKNIFK----------GTVNLPVSFVNIINNIAGN--QEENVIVDITPLELFKM 981

Query: 999  VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            +++  E+L  +    P         +  F IL     + K ++   +LT+++ E ++  I
Sbjct: 982  IEENMEKLNKIYYCKP---------SELFKILYYYYLSPKELIMHKKLTKKSVEVLLLTI 1032

Query: 1059 ESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK-NVTLGVPRLREIINVA 1117
             + + +S+VAPGEM+G +AAQSIGEP TQ+TLNTFH+AGV++K NVT GVPR+ EI++++
Sbjct: 1033 NNAYKKSIVAPGEMVGMIAAQSIGEPTTQLTLNTFHFAGVASKSNVTRGVPRIEEILSLS 1092

Query: 1118 KKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVE 1177
            +  K PS +++L       + +AK    +LE+T LR + +A E+ YDPD + T+I++D  
Sbjct: 1093 ENTKNPSCTIYLNEQDRYDQNKAKQYINSLEHTKLREIVDAIEICYDPDDLKTLIKKDEA 1152

Query: 1178 FVKSYYEMPD--EDI-----APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDD 1230
             +K Y E  +  +D      AP+  S W+LR+E+N+  M+DK ++M  +   +   + ++
Sbjct: 1153 LMKEYGEFEELLDDCKTTLHAPKDKSKWILRLEMNKAEMLDKNITMEDIHFALGNSY-NN 1211

Query: 1231 LTCIFNDDNADKLILRIRI-MNDEAPKG-------ELNDESAE----------------- 1265
            ++C++ND N+D L+ RIR+  N +A K        E  D+S E                 
Sbjct: 1212 ISCVYNDYNSDNLVFRIRLNKNIQALKKKKASSTPETLDQSDEIYILKNLQDELLDTLIL 1271

Query: 1266 ------DDVFLKKIESNMLTEMALR------------GVNLLAVMCHEDVDARRTTSNHL 1307
                  D V L+KI  N   E+ L+            G NL+ ++  E +D  +T +  +
Sbjct: 1272 RGIKNIDKVLLRKITDN-FEEIDLKYIKKEVWVLDTVGTNLIDILALEFIDKTKTYTTDI 1330

Query: 1308 IEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN 1367
            +EI  VLG+EA R+A+ +E    I FDG+Y+NY HL +L D M     +++I RHGIN +
Sbjct: 1331 MEIYNVLGVEAGRQAIFNEFSEAIEFDGAYINYHHLTMLADRMCCNDKMVSIFRHGINND 1390

Query: 1368 DTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLN-DEMLK 1426
            D GP+ + SFEET ++ L AA   E D +RGV+ NIM GQ    GT    L ++ D+M+ 
Sbjct: 1391 DVGPIAKASFEETPEMFLKAARHGELDAMRGVSANIMCGQEGYYGTSSFKLLVDMDKMMT 1450

Query: 1427 N 1427
            N
Sbjct: 1451 N 1451


>gi|149794933|gb|ABR31762.1| RNA polymerase II largest subunit [Polyblastia melaspora]
          Length = 1003

 Score =  977 bits (2525), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1026 (50%), Positives = 690/1026 (67%), Gaps = 51/1026 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D  + + A  +RN K R + I    +
Sbjct: 2    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEELRYAHTVRNGKKRFELIWRMSQ 60

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D ++P+ K+K      GGCG  QP +   G+++ A+YK  RK +
Sbjct: 61   KQNVCQA----DSP-EDEDDPMGKDKSGKIRHGGCGNAQPVIRKSGLELWAQYKP-RKGD 114

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            +++E +PE    K  +   + L + + ++DE  + LG+N  +ARP+WMILQ LP+PPPPV
Sbjct: 115  EEEEAVPE----KSQIWPAQALQIFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPV 170

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N++L R    GAP HI  E   LLQ+H+ATY
Sbjct: 171  RPSISVDGSGQGSRGEDDLTFKLGDIIRANQDLIRINAEGAPDHIAKELQALLQYHVATY 230

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +R K KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 231  MDNDIANLDKAQHKSGRPIKSIRARSKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 290

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLKELV  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 291  VGVPRSIARTLTYPETVTRFNISRLKELVTRGPEMHPG---ARYIIRENNERIDLRYHKD 347

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            ++   L++G+KVERH+ DGD +LFNRQPSL        R+++MPYSTFRLNLSVT+PYNA
Sbjct: 348  TAGIALKVGWKVERHIMDGDVILFNRQPSLXXX-----RVRVMPYSTFRLNLSVTTPYNA 402

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 403  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 462

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     A    
Sbjct: 463  LSREAVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPPALNLVRIDG-KASQPP 521

Query: 604  G--ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            G     AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +V
Sbjct: 522  GERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVV 581

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+
Sbjct: 582  NYWLLHNGFSIGIGDTVPDVGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRET 641

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGK
Sbjct: 642  FESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGK 701

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 702  RIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 761

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M  + F
Sbjct: 762  TGYIQRRLVKALEEVTVKYDSTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDNAF 821

Query: 902  DKAFRFEMDEENWNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEI 955
            +K FR ++ E    P  ++ Q+ ++    I    +++ +FD E ++L  DR  L    + 
Sbjct: 822  EKLFRVDLME----PKKLVWQDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRYVKKA 877

Query: 956  ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPL 1015
            ATS D   PLP+N+ R++  A+ TFK+     SD+HP  V+  V +L +RL +V GED +
Sbjct: 878  ATSSDEMMPLPMNVVRILNQARTTFKIQSGALSDLHPSYVIPKVRQLLDRLIIVRGEDRI 937

Query: 1016 SVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGC 1075
            S+EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF+++  +PGEM+G 
Sbjct: 938  SLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKATASPGEMVGV 997

Query: 1076 VAAQSI 1081
            +AAQSI
Sbjct: 998  LAAQSI 1003


>gi|157741490|gb|ABV69450.1| RNA polymerase II largest subunit, partial [Dermatocarpon luridum]
          Length = 999

 Score =  977 bits (2525), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1028 (50%), Positives = 686/1028 (66%), Gaps = 59/1028 (5%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC K+ A  D  + + AL +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKVKA-VDSEELRYALSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P  D ++P+ K K      GGCG  QP++   G+++ A+YK  RK +
Sbjct: 60   KQNVCQA----DSP-DDEDDPIAKEKSGKIRHGGCGNAQPQVRKSGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +   + L V + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEETIPE----KSQIWPAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI +LK+LV  GP   PG   A+YIIR+  +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEMHPG---ARYIIREHNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L++G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKVGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     + +  
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMISMVLPPALNLVRIDGKSSQSPS 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  G+LL G   KK++GT +  +IH I+ E G + A  F    Q ++N
Sbjct: 520  ERFAPAGDSGLFVADGQLLFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVIN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T++ I   + K K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDINTVDAIKLEVDKKKAEVERITQSAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFE 819

Query: 903  KAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATE-------- 954
            K FR ++ E    P  ++  + D L+   E+    D +VQKL  D Y+  TE        
Sbjct: 820  KQFRVDLME----PKKLV--WQDRLEQASEIHG--DVDVQKLFDDEYEQLTEDRKFLRYV 871

Query: 955  --IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGE 1012
               ATS D   PLP+N+ R++  A+ TFK+    PSD+HP  V+  V +L +RL VV GE
Sbjct: 872  KQAATSADEMMPLPMNVVRILNQARTTFKIQSGAPSDLHPSYVIPKVKQLLDRLIVVRGE 931

Query: 1013 DPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEM 1072
            D +S+EAQ+N TL     LRS  A +R++ E+ L R AF+ V+G IE+RF+++  +PGEM
Sbjct: 932  DRISLEAQENPTLLIKAQLRSRLAFRRLVMEYSLNRLAFDHVVGAIETRFIKAAASPGEM 991

Query: 1073 IGCVAAQS 1080
            +G +AAQS
Sbjct: 992  VGVLAAQS 999


>gi|157741492|gb|ABV69451.1| RNA polymerase II largest subunit, partial [Dermatocarpon miniatum]
          Length = 999

 Score =  977 bits (2525), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1024 (50%), Positives = 688/1024 (67%), Gaps = 51/1024 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D  + + AL +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEELRYALSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P  D ++P+ K K      GGCG  QP++   G+++ A+YK  RK +
Sbjct: 60   KQNVCQA----DSP-DDEDDPIAKEKSGKIRHGGCGNAQPQVRKSGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +   + L V + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEETIPE----KSQIWPAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI +LK+LV  GP   PG   A+YIIR+  +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEMHPG---ARYIIREHNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L++G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKVGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     + +  
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMISMVLPPALNLVRIDGKSSQSPS 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  G+LL G   KK++GT +  +IH I+ E G + A  F    Q ++N
Sbjct: 520  ERFAPAGDSGLFVADGQLLFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVIN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+  I   + K K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDINTVNAIKLEVDKKKAEVERITESAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFE 819

Query: 903  KAFRFEMDEENWNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIA 956
            K FR ++ E    P  ++ Q+ ++    I    +++ +FD E ++L  DR  L    + A
Sbjct: 820  KQFRVDLME----PKKLVWQDRLEQASEIHGDVDVQKLFDDEYEQLMEDRKFLRYVKQAA 875

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            TS D   PLP+N+ R++  A+ TFK+    PSD+HP  V+  V +L +RL VV GED +S
Sbjct: 876  TSADEMMPLPMNVVRILNQARTTFKIQSGSPSDLHPSYVIPKVKQLLDRLIVVRGEDRIS 935

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
            +EAQ++ATL     LRS  A +R++ E+ L R AF+ V+G IE+RF+++  +PGEM+G +
Sbjct: 936  LEAQEDATLLIKAQLRSRLAFRRLVMEYSLNRLAFDHVVGAIETRFIKAAASPGEMVGVL 995

Query: 1077 AAQS 1080
            AAQS
Sbjct: 996  AAQS 999


>gi|157741544|gb|ABV69477.1| RNA polymerase II largest subunit, partial [Staurothele fissa]
          Length = 999

 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/1024 (50%), Positives = 685/1024 (66%), Gaps = 51/1024 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D    + AL +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKA-VDSEDLRYALSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKG------GCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +DG++   K+KG      GCG  QP +   G+++ A+YKA RK +
Sbjct: 60   KQNVCQA----DAP-EDGDDQGAKDKGVKPRHGGCGNAQPVIRKTGLELWAQYKA-RKVD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +   + L V + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEESVPE----KSQIWXAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +N E+LK+LV  GP   PG   A+YIIR+ G+R+DLR+ K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNAEKLKQLVVNGPERHPG---ARYIIREHGERIDLRFHKN 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +    L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TDSITLKAGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQV ++++P  +NL R     +    
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQVISMVLPPALNLVRIDGKPSQPPG 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VN
Sbjct: 520  ERFAPAGDSGLFVSDGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMSFFNGAQTVVN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDVGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFE 819

Query: 903  KAFRFEMDEENWNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIA 956
            K FR ++ E    P  ++ Q+ +D    I    +++ +FD E ++L  DR  L    + A
Sbjct: 820  KQFRVDLME----PKKLVWQDRLDQASEIHGDVDVQKMFDEEYEQLVEDRRFLRRIKKAA 875

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            T+ D   PLP+N+ R++  A+ TFK+     SD+H   V+  V +L +RL +V GED +S
Sbjct: 876  TTSDEMMPLPMNIVRILNQARTTFKIQSGATSDLHASYVIPKVKQLLDRLVIVRGEDRIS 935

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
            +EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G +E+RF+++  +PGEM+G +
Sbjct: 936  LEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAVETRFIKATASPGEMVGVL 995

Query: 1077 AAQS 1080
            AAQS
Sbjct: 996  AAQS 999


>gi|157741504|gb|ABV69457.1| RNA polymerase II largest subunit, partial [Heteroplacidium
            imbricatum]
          Length = 999

 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/1024 (50%), Positives = 683/1024 (66%), Gaps = 51/1024 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D  + + AL +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEELRYALSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGG------CGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+       P  D E+P+ K KGG      CG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNICQAD-----PPDDEEDPIAKEKGGKIKHGGCGNAQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            +++E +PE    K  +   + L V + ++DE  + LGLN  +ARP+WMILQ LP+PPPPV
Sbjct: 114  EEEETVPE----KSQIWPAQALQVFQHLTDETLETLGLNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK+LV  GP   PG   A+YIIR+  +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEMHPG---ARYIIREHNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L++G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKVGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L +VP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCVVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            + ++  MNI +W  D+DG +PQP I+KPRP WTGKQ+ ++++P  +NL R     A    
Sbjct: 460  LSREEVMNITLWVPDWDGVIPQPAIVKPRPRWTGKQMISMVLPPALNLVRIDG-KASQPP 518

Query: 604  G--ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            G     AGD+ + +  G+L+ G   KK++GT + S+IH I+ E G + A  F    Q  V
Sbjct: 519  GERFAPAGDSGLFVADGQLMFGMFNKKSVGTGSNSVIHTIFNEFGHETAMAFFNGAQTAV 578

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FSIGIGDT+ D  T+E I + + K K  V+ + + A  + LE  PG  + E+
Sbjct: 579  NYWLLHNGFSIGIGDTVPDVGTVEKIKNEVDKKKAEVERITQSAVAEDLEALPGMNVRET 638

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGK
Sbjct: 639  FESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGK 698

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 699  RIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 758

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F
Sbjct: 759  TGYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDDAF 818

Query: 902  DKAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIA 956
            +K FR ++ E     W+      E   ++    +++ +FD E ++L  DR  L    + A
Sbjct: 819  EKQFRVDLMEPKKLVWHDRL---EQASEIHGDVDVQKLFDEEYEQLVEDRRFLRYIRKAA 875

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            TS D   PLP+N+ R++  A+ TFK+    PSD+HP  V+  V +L +RL +V GED +S
Sbjct: 876  TSSDEMMPLPMNVVRILNQARTTFKIQSGAPSDLHPSYVIPKVKQLLDRLIIVRGEDRIS 935

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
            +EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF +++ +PGEM+G +
Sbjct: 936  LEAQENATLLIKGQLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFTKAIASPGEMVGVL 995

Query: 1077 AAQS 1080
             AQS
Sbjct: 996  VAQS 999


>gi|157741476|gb|ABV69443.1| RNA polymerase II largest subunit, partial [Verrucaria baldensis]
          Length = 998

 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1018 (49%), Positives = 683/1018 (67%), Gaps = 40/1018 (3%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A E + + + AL +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKATESE-ELRYALSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQL 202
             +  C+     D    + ++ +K   GGCG  QP +   G+++ A+YK  RK +D++E +
Sbjct: 60   KQNVCQADGPEDEDDPNAKDKIKVKHGGCGNAQPAIRKSGLELWAQYKP-RKGDDEEEAV 118

Query: 203  PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------ 256
            PE    K  +   + L V + ++D+  + LGL+  +ARP+WMILQ LP+PPPPV      
Sbjct: 119  PE----KSQIWPAQALQVFQHLTDDTLETLGLSLDFARPEWMILQSLPVPPPPVRPSISV 174

Query: 257  -------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELP 309
                   R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN++ 
Sbjct: 175  DGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPEHIAKELQALLQYHVATYMDNDIA 234

Query: 310  GQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWS 369
               +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP S
Sbjct: 235  NLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 294

Query: 370  IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHL 429
            IA  LTYPETVT +N+++LK+LV  GP+  PG   A++I+R++ +R+DLRY K +++  L
Sbjct: 295  IAKTLTYPETVTLWNMDKLKQLVVNGPNNHPG---ARFIVRENNERIDLRYHKNTAEITL 351

Query: 430  ELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDE 489
            + G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNADFDGDE
Sbjct: 352  KTGWKVERHIKDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDE 404

Query: 490  MNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVF 549
            MN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  K+ +RD F+ ++  
Sbjct: 405  MNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKVCRRDVFLSREEV 464

Query: 550  MNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG--ILT 607
            MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     A    G     
Sbjct: 465  MNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMISMVLPPALNLVRIDG-KASQPPGERFAP 523

Query: 608  AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 667
            AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A+ F    Q +VNYWLL 
Sbjct: 524  AGDSGLFVSDGQLMFGLFNKKSVGTGSNGIIHTIYNEFGHEVAQAFFNGAQTVVNYWLLH 583

Query: 668  NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVN 727
            N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+FE+KV+
Sbjct: 584  NGFSIGIGDTVPDVGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVS 643

Query: 728  QVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 787
              LN ARDEAGS+ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKRIPFGF
Sbjct: 644  AALNGARDEAGSATENSLKDINNAITMARAGSKGSTINISQMTAIVGQQSVEGKRIPFGF 703

Query: 788  VDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQR 847
              RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQR
Sbjct: 704  KYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQR 763

Query: 848  RLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF 907
            RLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IE Q +D + M    F+K FR 
Sbjct: 764  RLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIEHQRVDVIAMSDDAFEKQFRV 823

Query: 908  EMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR--YQLATEIATSGDSS 962
            ++ E     W       E   ++    +++ +FD E ++L  DR   +   + AT+ D  
Sbjct: 824  DLMEPKKLVWRDRL---EQASEIHGDVDVQKLFDEEYEQLLEDRQFLRFIKKAATTSDEM 880

Query: 963  WPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKN 1022
             PLP+N+ R++  A+ TFK+     SD+HP  V+  V +L +RL +V GED +S+EAQ+N
Sbjct: 881  MPLPMNIIRILNQARTTFKIQTGAASDLHPSYVIPKVKQLLDRLVIVRGEDKISLEAQEN 940

Query: 1023 ATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            AT+     LRS  A KR++ EH L R AF+ VIG IE+RF+++  +PGEM+G +AAQS
Sbjct: 941  ATMLIKAQLRSRLAFKRLVMEHSLNRLAFDHVIGAIETRFIKATASPGEMVGVLAAQS 998


>gi|157741598|gb|ABV69504.1| RNA polymerase II largest subunit, partial [Verrucaria muralis]
          Length = 999

 Score =  976 bits (2522), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1024 (50%), Positives = 683/1024 (66%), Gaps = 51/1024 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D  + + A  +RN KNR + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAI-DSEELRYAQTVRNRKNRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D ++P+ K +      GGCG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNICQA----DSP-EDEDDPMGKERSGKIRHGGCGNAQPAIRRSGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +   + L + + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEEAVPE----KSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLKELV  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKELVTRGPEMHPG---ARYIIRENNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
             +   L++G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  PAGIALKVGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     A    
Sbjct: 460  LSREAVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPPALNLVRIDG-KASQPP 518

Query: 604  G--ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            G     AGD+ + +  GEL+ G   KK++GT +  +IH I+ E G + A  F    Q +V
Sbjct: 519  GERFAPAGDSGLFVADGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVV 578

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+
Sbjct: 579  NYWLLHNGFSIGIGDTVPDVGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRET 638

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGK
Sbjct: 639  FESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGK 698

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFF AM GREGLIDTAVKT+E
Sbjct: 699  RIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFRAMAGREGLIDTAVKTAE 758

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M  + F
Sbjct: 759  TGYIQRRLVKALEEVTVKYDSTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDNAF 818

Query: 902  DKAFRFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIA 956
            +K FR ++ E       + Q+ ++    I    +++ +FD E  +L  DR  L    + A
Sbjct: 819  EKLFRVDLMEPK---KLVWQDRLEQASEIHGDVDVQKLFDEEYDQLVEDRKFLRYVKKAA 875

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            TSGD   PLP+N+ R++  A+ TFK+     SD+HP  V+  V +L +RL +V GED +S
Sbjct: 876  TSGDEMMPLPMNVVRILNQARTTFKIQSGALSDLHPSYVIPKVKQLLDRLIIVRGEDRIS 935

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
            +EAQ NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF+++  +PGEM+G +
Sbjct: 936  LEAQDNATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKATASPGEMVGVL 995

Query: 1077 AAQS 1080
            AAQS
Sbjct: 996  AAQS 999


>gi|157741538|gb|ABV69474.1| RNA polymerase II largest subunit, partial [Staurothele areolata]
          Length = 999

 Score =  975 bits (2521), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1024 (50%), Positives = 685/1024 (66%), Gaps = 51/1024 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D    + AL +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKA-VDSEDLRYALSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKG------GCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +DG++   K+KG      GCG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQA----DAP-EDGDDQGAKDKGVKTRHGGCGNAQPVIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +   + L V + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEESVPE----KSQIWPAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +N E+LK+LV  GP   PG   A+YIIR+ G+R+DLR+ K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNAEKLKQLVVNGPERHPG---ARYIIREQGERIDLRFHKN 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            ++   L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TNSITLKAGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQV ++++P  +NL R     +    
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQVISMVLPPALNLVRIDGKPSQPPG 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VN
Sbjct: 520  ERFAPAGDSGLFVSDGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMSFFNGAQTVVN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDVGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFE 819

Query: 903  KAFRFEMDEENWNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIA 956
            K FR ++ E    P  ++ Q+ +D    I    +++ +FD E ++L  DR  L    + A
Sbjct: 820  KQFRVDLME----PKKLVWQDRLDQASEIHGDVDVQKMFDEEYEQLAEDRRFLRHIKKAA 875

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            T+ D   PLP+N+ R++  A+ TFK+     SD+HP   +  V +L +RL +V GED +S
Sbjct: 876  TTSDEMMPLPMNIVRILNQARTTFKIQSGATSDLHPSYAIPKVKQLLDRLVIVRGEDRIS 935

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
            +EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G +E+RF+++  +PGEM+G +
Sbjct: 936  LEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAVETRFIKATASPGEMVGVL 995

Query: 1077 AAQS 1080
            AAQS
Sbjct: 996  AAQS 999


>gi|111278799|gb|ABH09097.1| RNA polymerase II largest subunit [Ramichloridium anceps]
          Length = 1002

 Score =  975 bits (2520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1021 (49%), Positives = 675/1021 (66%), Gaps = 42/1021 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILA-DEDDHKFKQALKIRNPKNRLKKILDAC 141
            ++LA P++H GFM  V  I+ +VC NC KI A D    + + AL +R+ K R   +    
Sbjct: 2    IKLATPVYHYGFMTKVKKILETVCHNCGKIKALDVSSEELRHALSLRDRKRRFDAVWRLS 61

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            K +  CE     D      + P++   GGCG  QP++  +G+++ A +K  RK  D+++ 
Sbjct: 62   KPRLICEADPAEDQESDPKKGPVQVKHGGCGNAQPEIRRQGLQLWASWKP-RKGEDEEDA 120

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV----- 256
             PE    K+ +  +  L   + ++DE   ++GL+  YARP+WMIL  LP+PPPPV     
Sbjct: 121  APE----KRRIFPQDALNTFRTLTDETLDMMGLSLDYARPEWMILSALPVPPPPVRPSIS 176

Query: 257  --------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
                    R  DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DNE+
Sbjct: 177  VDGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNEI 236

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
             G  +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP 
Sbjct: 237  AGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPR 296

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIA  LT+PETVTP+N+++LK LV  GP   PG   A+YIIRD G+R+DLR+ K++ D  
Sbjct: 297  SIARTLTFPETVTPFNLDKLKRLVANGPTEHPG---ARYIIRDTGERIDLRHHKRTGDVV 353

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            L+ G+KVERH+ D D +LFNRQPSL        R+++MPYSTFRLNLSVT+PYNADFDGD
Sbjct: 354  LQYGWKVERHIQDRDVILFNRQPSLXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGD 413

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMN+HVPQS E+RAE+  L MVP  IVSPQ N P+MGIVQDTL G  K+ +RD F+ +D 
Sbjct: 414  EMNLHVPQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKVCRRDVFLTRDQ 473

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAA-----WHADNDK 603
             MNI++W  D+DG +PQP I+KPRP WTGKQ+ ++I+P  +NL R  A     W+  +D 
Sbjct: 474  VMNIMLWVPDWDGVIPQPAIIKPRPRWTGKQMISMILPTALNLERVDAKGEDKWNPSSDT 533

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
            GIL        + +GEL+ G   KK +GTS G +IH I+ E+G +AA  F    Q +VNY
Sbjct: 534  GIL--------VLEGELMLGLFSKKFVGTSAGGVIHTIFNELGHEAAMAFFNGAQTVVNY 585

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            WLL + FSIG+GDT+ D +T+  I D +   K  V  +  QA    LEP PG  + ++FE
Sbjct: 586  WLLHHGFSIGVGDTVPDPETVAKIQDAVDTKKAEVDAITLQAYKDDLEPLPGMNVRQTFE 645

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
            +KV   LN ARD+AG++ + SL + NN   M  AGSKGS INI+QMTA VGQQ VEGKRI
Sbjct: 646  SKVMNALNQARDQAGAATENSLKDLNNAIQMARAGSKGSTINIAQMTAIVGQQAVEGKRI 705

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
            PFGF  RTLPHF KDDY   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETG
Sbjct: 706  PFGFKYRTLPHFAKDDYSAPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETG 765

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IE+Q +D + M    F+ 
Sbjct: 766  YIQRRLVKALEEVTVKYDSTVRDSRGNIVQFIYGEDGLDGAHIENQKVDIITMSDKAFND 825

Query: 904  AFRFEM---DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGD 960
             +  ++   D   W    +LQ    +L+   EL+++FD E++ L   R     ++    +
Sbjct: 826  RYAVDVMSGDVSLWR-GKLLQAR--ELQGDTELQEMFDEELESLRESR-DFLRKMGKGTE 881

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
             S  LP+N++R+I  AQK FK+     +D+ P   + +V +L ERL VV GEDP+S EAQ
Sbjct: 882  DSMQLPLNIQRIIDQAQKNFKIRRGDKTDLDPRHALVSVKQLLERLVVVRGEDPISKEAQ 941

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
             NATL     LRS  A KR++ EH + R AF+ +IG +ESRF+ +   PGEM+G +AAQS
Sbjct: 942  NNATLLLKGQLRSRLAFKRLVLEHGINRLAFDNIIGGVESRFIAAAANPGEMVGVLAAQS 1001

Query: 1081 I 1081
            I
Sbjct: 1002 I 1002


>gi|183233415|ref|XP_651781.2| DNA-directed RNA polymerase II large subunit [Entamoeba histolytica
            HM-1:IMSS]
 gi|48249473|gb|AAT40981.1| RNA polymerase II largest subunit [Entamoeba histolytica]
 gi|169801584|gb|EAL46395.2| DNA-directed RNA polymerase II large subunit, putative [Entamoeba
            histolytica HM-1:IMSS]
 gi|449709040|gb|EMD48386.1| DNA-directed RNA polymerase II large subunit, putative [Entamoeba
            histolytica KU27]
          Length = 1636

 Score =  974 bits (2517), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 610/1695 (35%), Positives = 922/1695 (54%), Gaps = 170/1695 (10%)

Query: 11   EVAKVRMVQFGILSPDEIRQMSVVQI-EHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
            E  +V+ ++F +LS ++IR+M V +I E    +  GKP  GGL+DPR+G  ++  +C+TC
Sbjct: 7    ETKRVKQIKFTLLSSEQIRKMGVCKITESTSVSSDGKPVLGGLADPRMGPFEKGEECQTC 66

Query: 70   TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRN 129
                 ECPGHFG++EL +P+++  +MK +L +++ VC  C +I    D+       +++N
Sbjct: 67   RGTRTECPGHFGYIELTQPVYNAIYMKYILHVLKCVCPICKRIYCHGDE-------RVKN 119

Query: 130  PKN----RLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKM 185
             K+    RLK+I +      K  G         D  +  ++ +       P +  E  K+
Sbjct: 120  IKSTGEERLKEIYEFIHKNYKACGVLSEKKKDHDKHQNNEEEEEQNPCNGPIVDYELPKL 179

Query: 186  IAEYKAQ-RKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
             +E K + R+KN  +         +        L + K ++DED ++LG +P    P +M
Sbjct: 180  KSENKLEIRRKNGIK------TNEENDFKPRDALAIFKDMTDEDVRVLGFDPIDCHPKFM 233

Query: 245  ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            I  ++P+PPP VRPS          DDLT     +I  NE L+  E N     +   + +
Sbjct: 234  IFTLIPVPPPCVRPSIVSEGAKESKDDLTVLYENVITANERLK--EENQKCEGVSEYYNK 291

Query: 295  LLQFH-IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
            L++   I      +    P    R  +  KSI  RL +K+GR+R NLMGKRVDFSARTVI
Sbjct: 292  LMELQTICAKISMKNVKLPETMLRK-KNFKSIEERLSSKQGRLRLNLMGKRVDFSARTVI 350

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            +PDP +++D++GVP  +A  LT+PE VT +N E+L++LV  G +  PG   A  + R +G
Sbjct: 351  SPDPNLSMDEVGVPTGVAKILTFPEVVTQHNKEKLQKLVSAGMNDYPG---AFMLERKNG 407

Query: 414  QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
            Q     Y    S+  +++G  V R++ +GD+V+FNRQPSLH+MS+MGH+++++P+STFR+
Sbjct: 408  QT----YRLNGSEKIIDIGDTVHRYIMNGDYVIFNRQPSLHRMSMMGHKVRVLPFSTFRM 463

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NL  T+PYNADFDGDEMN+HVPQ+ E RAEV  LM+ P  I++PQ N P+MGIVQDT  G
Sbjct: 464  NLCDTTPYNADFDGDEMNLHVPQTLEARAEVATLMLTPTQIITPQDNGPIMGIVQDTQCG 523

Query: 534  CRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
               ITKR+TFIE+ VF NIL   ++FDG VP P ILKP P WTGKQVF  I+P  IN  R
Sbjct: 524  SYLITKRETFIEQLVFYNILQCLDNFDGTVPIPAILKPIPKWTGKQVFTQILP-TINFHR 582

Query: 594  TAAWHADNDKGILTAG----DTLVRIEKGELLSGTLCKKT-LGTSTGSLIHVIWEEVGPD 648
               W     K +L  G    D+ V I  G  L G+L  K+  G +   +I  I+++ G +
Sbjct: 583  -GNWSI---KELLKNGPAVADSDVYILDGVHLVGSLRNKSEFGKNRSGIIQTIFKDKGME 638

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
            A + F   TQ  VN W+L   F++G+GD +      ++I   + K+K      +    D 
Sbjct: 639  ATKVFFNKTQATVNSWILTRGFTVGVGDIVVPQSVHDSIRANVEKSKKEAVKFLSHQHDD 698

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             ++ + G TM E+ E+++  +L   ++E  S   KSL + NNL AMV +GSKGS  NI Q
Sbjct: 699  EIKVQAGNTMFENLESELGSLLEKLKNECDSITTKSLKKDNNLLAMVDSGSKGSTTNILQ 758

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            M A VG+Q +   RIPFGF  RTLPH+ K+DYG  SRGFVENSY+ GL+PQEFFFHAM G
Sbjct: 759  MVAFVGKQEINNLRIPFGFYKRTLPHYWKEDYGFVSRGFVENSYVMGLSPQEFFFHAMAG 818

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            R+G+IDTAVKTS+TGYIQR++VK MED+  KYD TVR S GD+++F+YG DG+D++  E+
Sbjct: 819  RQGIIDTAVKTSDTGYIQRKMVKCMEDVQCKYDRTVRRSSGDMVEFMYGGDGVDALMCET 878

Query: 889  QTL--------DSLKMKKSEFDKAFRFEMDE-ENWNPN-----YMLQEYIDDLKTIKELR 934
            Q          D+ +   +++D    F+M+E   W+ N      +L E I +     E +
Sbjct: 879  QKYIYCNDSKPDNFEGSINDYDT---FKMNELYKWDLNDEKLSELLDEDIYNKLFSDEYQ 935

Query: 935  DVFDAEVQKLEADRYQLATEIATSGD---SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMH 991
             +FD E Q++  +R +L      S D       + VN  R I N      +   + S++ 
Sbjct: 936  TLFDNEFQRILDERAELYQPWRRSLDLKPCDIHIVVNFARQIDNVIAARYLPKSQRSNLD 995

Query: 992  PMEVVEAVDKLQERLKVVPG--EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTRE 1049
            P  V+E  + L + L  +     D    E  K+A   F  LL  T +SK+ L +H L++E
Sbjct: 996  PKYVIERENALIKELSSIGAVKNDKFDEERFKDALGSFGKLLHCTLSSKQCLIQHHLSKE 1055

Query: 1050 AFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPR 1109
            +F+ ++  I++ + +S + PGEM+G +AAQSIG PATQMTLNTFH+AG+S+ +VT GVPR
Sbjct: 1056 SFDDLMDRIKNIYERSFINPGEMVGSIAAQSIGAPATQMTLNTFHHAGISSASVTEGVPR 1115

Query: 1110 LREIINVAKKIKTPSLSVFLKPGVNSTKERA----KNVQCALEYTTLRSVTEATEVWYDP 1165
            L+E++NV+K  KTPS++V+L    N T+E      K +   + YT L+ + +  E+W+DP
Sbjct: 1116 LKELLNVSKTPKTPSMNVYL---TNDTRESMVDLDKELNKTIPYTKLKDLIDNVEIWFDP 1172

Query: 1166 DPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAA--VAEKI 1223
            D   ++IEED EF+  + E+  E+I PE    W +R+      MV   +   +  +  KI
Sbjct: 1173 DIANSVIEEDREFINDFIEV--EEIKPEDYCKWTIRLVFGYNKMVSMGVDSDSDILRVKI 1230

Query: 1224 NQEFDDDLTCIFNDDN----ADKLILRIRI----MNDEAPKGELNDE---SAEDDVFLKK 1272
             + F D L    + +N      K+++ IR     +++ +    L DE   S E   + K 
Sbjct: 1231 KELFKDALVIPSDSNNIVNGTVKIVVHIRFRVGSISECSNIDHLTDEVDKSVEAVAYYKS 1290

Query: 1273 IESNMLTEMALRGV--------------------------------------NLLAVMCH 1294
                +L  + + G+                                      N+  +   
Sbjct: 1291 KLDELLRTVVISGIEGITKVIIPQKPKNAIVVDPETKMLRDQLQWVVFTEGSNMAGLAEC 1350

Query: 1295 EDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRG 1354
            ++VD  +T +N++ E    LGIEA R  L  E  ++ +  GSYVN+RHLA++ D MT+ G
Sbjct: 1351 DNVDFYKTVTNNVYETFLYLGIEAGRTQL--EAELIKTLSGSYVNFRHLALMADVMTFTG 1408

Query: 1355 HLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
             +    R G++R   G + R SFE+T++    AA F+ESD L G+++NI++GQ    GTG
Sbjct: 1409 RIQPFNRMGLSRGRAGVITRASFEQTLEQFRRAAAFSESDILNGISQNILMGQRTVAGTG 1468

Query: 1415 DCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLS 1474
              ++ L+ + LK A  +   S+ E                 + DG               
Sbjct: 1469 AFTVLLDIDSLK-ASNIDENSFSE----------EEADKKAFIDGF-------------- 1503

Query: 1475 PVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYS 1534
                   SP    +  SPT++    P   G+SPS      T P ++  SP  + +SP  S
Sbjct: 1504 -----DVSPIRTHLVMSPTNTN--KPKPMGFSPSPVSPRKTHPQFATPSPFITSSSPRSS 1556

Query: 1535 PTSPTYSPS-SPGYSPTSPAYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSP 1591
            P    ++P  S G SP +PA    S     +SP ++   +SP  +P    +  ++P++  
Sbjct: 1557 PMLMQFTPRFSSGPSPYNPATGALSKPAFLSSPMFAGKQSSPYNNPNPSPFLGSTPAFQG 1616

Query: 1592 -TSPSYSPTSPSYSP 1605
             +SP  + +SPS  P
Sbjct: 1617 ISSPFINYSSPSIFP 1631


>gi|145490118|ref|XP_001431060.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124398162|emb|CAK63662.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1750

 Score =  974 bits (2517), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 641/1828 (35%), Positives = 965/1828 (52%), Gaps = 289/1828 (15%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSV-VQIEHGETTE-RGKPKPGGLSDPRLGTIDR 62
            F YS A +AKVR V+FG++S + I++ +  ++I+  +T E  G PK  GL+D R+G    
Sbjct: 8    FTYSTAPIAKVRRVEFGLMSHELIKEWTGDIEIKELQTNELDGTPKQNGLNDLRMGVNTN 67

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD---H 119
              KC+TC      C GHFG +EL KP++H+GF++ V  +++ +C +C K+   + +    
Sbjct: 68   AQKCKTC-GETKYCQGHFGRIELNKPVYHVGFLQIVKKVLKCICHSCGKLRQPQSEDAWQ 126

Query: 120  KFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQP-KL 178
             F++A + R  + RL +I+       KCE         +  +E  + N   CG + P ++
Sbjct: 127  SFQKAKEHRLNRKRLNEIVKLLGRIEKCE-------TSKHKQEENQGNDDFCGEKIPTRI 179

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
                 ++  +Y  +              E  + LTAER L + K+I DED  +LG   K 
Sbjct: 180  QAINGQIKIQYNTK--------------EAAKELTAERCLEIFKKIRDEDAIILGFT-KD 224

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            +RP  +I++ L + PP VRP+          D  T     I++ N  +     +     +
Sbjct: 225  SRPRDLIIKFLLVMPPQVRPAIEMNPARIAQDQYTQIYKSILQKNNEIANCSSDAERVRL 284

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
              E  +     +A   D+E  G+ +   +S +P+KSI +RLK KEGR R NLMGKRVDF 
Sbjct: 285  APELMR----EVAKIIDSEKAGKIKM--KSTQPLKSIRARLKGKEGRFRQNLMGKRVDFC 338

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            AR+VI+PD  + +D+LGVP  +A  LT PE VT YN+ER+ +L +            KY+
Sbjct: 339  ARSVISPDANLGMDELGVPQIVADQLTIPEEVTEYNLERVIQLAK--------TNKIKYV 390

Query: 409  I------RDDGQRLDLRYL-----KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 457
            I      R   ++    Y      +      +  G  VER L DGDFVLFNRQP+LH+MS
Sbjct: 391  IVPITDPRSKQRKFQALYFDFTDTEDQIRQKINQGVIVERCLQDGDFVLFNRQPTLHRMS 450

Query: 458  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 517
            +MGHR++I+PYSTFRLNLSV +PYNADFDGDEMNMHVPQS+ET AE+  L  VP+ IV+P
Sbjct: 451  MMGHRVRILPYSTFRLNLSVCTPYNADFDGDEMNMHVPQSYETIAELKYLAHVPRQIVTP 510

Query: 518  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTG 577
            +SN+PVMGIVQD+LLGC   T+RDTF+ +D  M+++MW E F G++P P ILKP+ LWTG
Sbjct: 511  KSNQPVMGIVQDSLLGCCLFTQRDTFLTRDQVMHLMMWNEQFTGELPMPAILKPQELWTG 570

Query: 578  KQVFNLIIPKQINL--------FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKT 629
            KQ+ ++IIP+ IN          R   W+AD DK +         I++G L+SG   K+ 
Sbjct: 571  KQIMSMIIPQSINTERGIREDDLRKPNWNAD-DKSLC--------IQRGSLVSGIFNKEL 621

Query: 630  LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETIND 689
            +G   GS++H+ W ++G +   +F+   Q +VN WL+ ++F++G  D    A  +  + +
Sbjct: 622  VGQGAGSVVHLCWLDLGAEKTLEFMTSCQRIVNNWLIMHSFTVGCQDI---APHINLVAE 678

Query: 690  TISKAKNNVKNLI---------KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSS 740
            T  ++K   +  I         K+ QD     + G+ +M+SFE   N  LN  RD+  S 
Sbjct: 679  TEKRSKEQDEEYIKLLQIFLDAKKIQDNRYH-QKGKRIMDSFEYSFNMKLNKVRDDINSK 737

Query: 741  AQKSLSESNN-LKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDD 799
              +++ +  N +  M+ A SKG   N++Q+T+ VGQQN+E KRI FGF  RTLPHF+K D
Sbjct: 738  VTETIDQIRNCMYKMIWAKSKGEASNLAQITSLVGQQNLESKRIQFGFAYRTLPHFSKFD 797

Query: 800  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
            YGPE+RGFV +++ +GL P EFFFH MGGR+GLIDTAVKTS TGYIQR+L+KA+ED+ V+
Sbjct: 798  YGPEARGFVASNFFKGLKPTEFFFHTMGGRDGLIDTAVKTSRTGYIQRKLIKAVEDVFVR 857

Query: 860  YDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYM 919
            YD + R+S+G V QF YGED M + +IE Q +  + +  ++ ++  ++E+ +E W  + +
Sbjct: 858  YDSSCRDSVGAVYQFHYGEDKMAAEFIEHQEIKCVNLSNAQLEE--KYELIKEQWFGSEI 915

Query: 920  LQEYIDDL--KTIKELRDVFDA---------EVQKLEADRYQLATEIATSGD---SSWPL 965
             Q+Y + L    IK++ + F+          E++K+  +  +L    +   +   + + L
Sbjct: 916  RQKYQNILTEDVIKDIEEDFEGQALLKGEFDEIKKIRNELRRLFLIDSAPKEELFTHYYL 975

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
             VN++R+I   +   K+  R    ++P+ V + VD+L +++  +   D   +E +K+   
Sbjct: 976  VVNIERIISTIKINKKISDREKCRLNPIYVTQQVDELIQKVDKLLSYD---LEERKDCIN 1032

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPA 1085
             F   L+ + ASK +   HRLT EAF+ +I EI  +  +S+  PGE +G +AAQS+GEP 
Sbjct: 1033 LFRTHLKVSLASKDLCCRHRLTPEAFQELISEIIYKLKKSMAHPGEAVGAIAAQSLGEPT 1092

Query: 1086 TQMTLNTFHYAGVSA-KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKN-- 1142
            TQMTLNTFH +GV+  KNVTLGVPRL+E+++ +KK KTPSL+++  P +   +   K+  
Sbjct: 1093 TQMTLNTFHKSGVTGDKNVTLGVPRLQELLDASKKTKTPSLTIYFDPPLEYAELELKDDK 1152

Query: 1143 ---------------------------VQCALEYTTLRSVTEATEVWYDPDPMGTI-IEE 1174
                                       +Q  +   T       +E++Y  DP   + I E
Sbjct: 1153 DKKSYLKTEQLVHPHKQDDFTQSMLVQMQGRILGQTFGQYIIKSEIYYQSDPNNPLHITE 1212

Query: 1175 DVE--FVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDD--- 1229
            D E  F    +   D+D A  K   W+L + ++ + ++    +   + + I +  D+   
Sbjct: 1213 DQEDNFTDGIF---DQDEAKYK---WILFLHMDHQKILSNLETWDKIRDSIPKILDETQV 1266

Query: 1230 -----DLTCIFNDDNADKLILRIRIMND---------EAPKGELNDESAEDD-------- 1267
                     I + D+ +   ++I+  +D         E  KG  +DE A D+        
Sbjct: 1267 KFGISSQNTIVDPDSMNHKYIQIKYFHDYADQKKFKPERGKGNFDDEIAFDEENKTKTYV 1326

Query: 1268 ----VFLKKIESNMLTEMALRGVNLLAVMCH----------------------------- 1294
                  LK++E   +   +L G++ +  + H                             
Sbjct: 1327 DTPYTILKRLEET-IRGYSLGGISKITRILHSQIEKQFYINNKTGGFLKQANVDGKGKWK 1385

Query: 1295 -------------------EDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
                               E VD RRTT++ + EI +VLGIEA R AL+ E R + +  G
Sbjct: 1386 IIEKYLETEGTNLKEILRLEHVDQRRTTTDDVYEISQVLGIEAARAALVGETRKIFNHYG 1445

Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRN-DTGPMMRCSFEETVDILLDAAVFAESD 1394
             Y+NYRHL +L D MT+RG L A+ R+GINR  +   + + SFEETV+IL DAAVF+E D
Sbjct: 1446 IYINYRHLYLLYDWMTHRGRLTAVNRNGINRIPEVSVLRKSSFEETVEILYDAAVFSEID 1505

Query: 1395 YLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS-----YMEGLEFGMTPARS 1449
            ++RG++ENI+ GQL P GTG   L +N    KN  E +L S     + +G E+       
Sbjct: 1506 HMRGLSENIIFGQLCPHGTGCFELMVN---AKNVKEFKLKSSHADKFTQGGEY------- 1555

Query: 1450 PVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSP-- 1507
                +PY     +P  L +P                      P  S G+  +SP Y+P  
Sbjct: 1556 LAEQSPYDQNQQTPLMLNTP---------------------GPGVSQGFIENSP-YTPYH 1593

Query: 1508 SSPGYSPTSPG--YSPTSPGYSPTSPGYSPTSPT----YSP--SSPGYSPTSPAYSPTSP 1559
             SP    T  G  Y+P S   SP  P  +P  P      SP  S  G   +    +  S 
Sbjct: 1594 KSPANFATPFGREYTPNSSHCSPFYPN-TPLMPNDPYQLSPVGSDSGIQQSVQKQANVSD 1652

Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPAY-SPTSPAY 1617
            S+SP SP Y+  + S SP+  S    +     +SP   S  SP+Y  TS  Y SP SP  
Sbjct: 1653 SHSPGSPHYTSHTNSPSPSYRSSERATSGQRSSSPILNSSRSPNY--TSSVYNSPLSPTN 1710

Query: 1618 --SPTSPAYSPTSPS---YSPTSPSYSP 1640
              SP  P  SP SP    ++  SP Y P
Sbjct: 1711 TGSPRVPTGSPHSPQGSIFTTYSPVYQP 1738



 Score =  177 bits (448), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 148/401 (36%), Positives = 200/401 (49%), Gaps = 64/401 (15%)

Query: 1271 KKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
            K IE  + TE    G NL  ++  E VD RRTT++ + EI +VLGIEA R AL+ E R +
Sbjct: 1385 KIIEKYLETE----GTNLKEILRLEHVDQRRTTTDDVYEISQVLGIEAARAALVGETRKI 1440

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN-DTGPMMRCSFEETVDILLDAAV 1389
             +  G Y+NYRHL +L D MT+RG L A+ R+GINR  +   + + SFEETV+IL DAAV
Sbjct: 1441 FNHYGIYINYRHLYLLYDWMTHRGRLTAVNRNGINRIPEVSVLRKSSFEETVEILYDAAV 1500

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS-----YMEGLEFGM 1444
            F+E D++RG++ENI+ GQL P GTG   L +N    KN  E +L S     + +G E+  
Sbjct: 1501 FSEIDHMRGLSENIIFGQLCPHGTGCFELMVN---AKNVKEFKLKSSHADKFTQGGEY-- 1555

Query: 1445 TPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPG 1504
                     +PY     +P  L +P                      P  S G+  +SP 
Sbjct: 1556 -----LAEQSPYDQNQQTPLMLNTP---------------------GPGVSQGFIENSP- 1588

Query: 1505 YSP--SSPGYSPTSPG--YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS 1560
            Y+P   SP    T  G  Y+P S   SP    + P +P   P+ P     SP  S +   
Sbjct: 1589 YTPYHKSPANFATPFGREYTPNSSHCSP----FYPNTPLM-PNDP--YQLSPVGSDSGIQ 1641

Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY-SPTSPAYSP 1619
             S    +    S S+SP SP Y+  + S SP+  S    +     +SP   S  SP Y  
Sbjct: 1642 QSVQKQA--NVSDSHSPGSPHYTSHTNSPSPSYRSSERATSGQRSSSPILNSSRSPNY-- 1697

Query: 1620 TSPAY-SPTSPSY--SPTSPSYSPTSPS---YSPTSPSYSP 1654
            TS  Y SP SP+   SP  P+ SP SP    ++  SP Y P
Sbjct: 1698 TSSVYNSPLSPTNTGSPRVPTGSPHSPQGSIFTTYSPVYQP 1738



 Score = 49.7 bits (117), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 4/159 (2%)

Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
            SP +P +   +   +P    Y+P S   SP  P  +P  P+  P   S   +      + 
Sbjct: 1587 SPYTPYHKSPANFATPFGREYTPNSSHCSPFYPN-TPLMPN-DPYQLSPVGSDSGIQQSV 1644

Query: 1650 PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN-PQSAKYSPSLAYS 1708
               +  S S+SP SP Y+  +   SP+  S    +     +SP  N  +S  Y+ S+  S
Sbjct: 1645 QKQANVSDSHSPGSPHYTSHTNSPSPSYRSSERATSGQRSSSPILNSSRSPNYTSSVYNS 1704

Query: 1709 PSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPT 1747
            P SP  +  SP  PT   +SP  S ++  SP Y P   T
Sbjct: 1705 PLSP-TNTGSPRVPTGSPHSPQGSIFTTYSPVYQPGGGT 1742



 Score = 46.2 bits (108), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 78/193 (40%), Gaps = 36/193 (18%)

Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1628
            SP +P +   +   +P    Y+P S   SP  P+ +P  P   P   +   +      + 
Sbjct: 1587 SPYTPYHKSPANFATPFGREYTPNSSHCSPFYPN-TPLMPN-DPYQLSPVGSDSGIQQSV 1644

Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY-SPTSPTY 1687
               +  S S+SP SP Y  TS + SP SPSY  +  A S    G   +SP   S  SP Y
Sbjct: 1645 QKQANVSDSHSPGSPHY--TSHTNSP-SPSYRSSERATS----GQRSSSPILNSSRSPNY 1697

Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPT 1747
              TS  YN                   SP SP +  SP   PT S +SP    ++  SP 
Sbjct: 1698 --TSSVYN-------------------SPLSPTNTGSPRV-PTGSPHSPQGSIFTTYSPV 1735

Query: 1748 YSPSSPYNAGGGN 1760
            Y P      G GN
Sbjct: 1736 YQPG----GGTGN 1744


>gi|157741564|gb|ABV69487.1| RNA polymerase II largest subunit, partial [Placopyrenium canellum]
          Length = 999

 Score =  974 bits (2517), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1023 (50%), Positives = 681/1023 (66%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D  + + A  +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGRVKKLLETVCHNCGKIKA-VDSEELRYAHSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P  D ++P+ K K      GGCG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQA----DSP-DDEDDPIAKEKSGKIRHGGCGNAQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +   + L V + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEEAVPE----KSQIWPAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NIERLK+LV  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNIERLKQLVTNGPQMHPG---ARYIIRENNERIDLRYHKN 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            ++D  L  G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TADIALRTGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +    
Sbjct: 460  LAREEVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPPALNLVRIDGKSSQPPL 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VN
Sbjct: 520  ERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDVGTVEKIKYEVDKKKAEVERITQSAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E+I VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M  + F+
Sbjct: 760  GYIQRRLVKALEEITVKYDTTVRDSRGNILQFIYGEDGLDGAHIESQRVDVIAMSDNAFE 819

Query: 903  KAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E     W       E   ++    +++ +FD E ++L  DR  L      AT
Sbjct: 820  KQFRVDLMEPKKLAWQDRL---EQASEIHGDVDVQKLFDEEYEQLVEDRQFLRSVNLAAT 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            S D    LP+N+ R++  A+ TFK+    PSD+HP  V+  V +L +RL VV GED +S+
Sbjct: 877  SADEMMYLPMNVVRILNQARTTFKIQSGAPSDLHPSYVIPKVKQLLDRLIVVRGEDRISL 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF+++  +PGEM+G +A
Sbjct: 937  EAQENATLLMKAQLRSRLAFKRLVVEYSLNRLAFDHVVGAIETRFIRATASPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|157741596|gb|ABV69503.1| RNA polymerase II largest subunit, partial [Wahlenbergiella mucosa]
          Length = 999

 Score =  973 bits (2514), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1023 (49%), Positives = 678/1023 (66%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D  + + A  +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLAKVKKILETVCHNCGKIKA-VDSEELRYAHSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +DG++ + K K      GGCG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNMCQA----DAP-EDGDDGIVKEKAGKIKHGGCGNAQPAIRKSGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D+ + +PE    K  +   + L V + +SDE  + LGLN  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEDDFVPE----KSQIWPSQALQVFQHMSDETLETLGLNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRVSAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP +IA NLTYPETVT +NI RL +LV  GP+  PG   AKY+IR  G R+DLR++K 
Sbjct: 290  VGVPRTIARNLTYPETVTKFNIGRLSQLVANGPNVHPG---AKYVIRKQGDRIDLRHVKS 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            S    L+ G KVERHL DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  SRGVELQTGMKVERHLLDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + +D  MNI++W  D+DG +P+P I KPR  WTGKQ+ ++++P  +NL R     + +  
Sbjct: 460  LSRDEVMNIMLWVPDWDGVIPEPAIFKPRTRWTGKQIISMVLPTALNLVRIDGKASQSPC 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD  + +  G+LL G   KK++GT +  +IH I+ E G + A  F    Q +VN
Sbjct: 520  ERFAPAGDGGLFVADGQLLFGLFNKKSVGTGSNGIIHTIFNEFGHETAMSFFNGAQTVVN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E +   + K K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDVGTVEKVKREVDKKKTEVEEITQSAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E++V+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESRVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + +  + F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISLSDNAFE 819

Query: 903  KAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E     W       E   +++   +++ +FD E  +L  DR  L    + AT
Sbjct: 820  KQFRIDLMEPKKLAWQGRL---EQASEIQGDVDVQKLFDQEYDQLVEDRRFLRDIKQAAT 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            S D   PLP+N+ R++  A+ TF +    PSD+HP  V+  V +L +RL VV G D +S+
Sbjct: 877  SSDEMMPLPMNIVRILNQARTTFHIQSGAPSDLHPSYVIPKVKQLLDRLVVVRGTDRISL 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G +E+RF+++  +PGEM+G +A
Sbjct: 937  EAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAVETRFIKAAASPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|157741484|gb|ABV69447.1| RNA polymerase II largest subunit, partial [Catapyrenium daedaleum]
          Length = 999

 Score =  972 bits (2512), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1020 (50%), Positives = 682/1020 (66%), Gaps = 43/1020 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D  + + AL +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKA-VDSEELRFALSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGG---DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
             +  C+     +E D  G++    +K   GGCG  QP +   G+++ A+YK  RK +D++
Sbjct: 60   KQNACQADTADEENDALGKEKAGRIKH--GGCGNAQPVIRKTGLELWAQYKP-RKGDDEE 116

Query: 200  EQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV--- 256
            E +PE    K  +   +VL + + ++D+  + LGL+  +ARP+WMILQ LP+PPPPV   
Sbjct: 117  ETVPE----KSQIWPAQVLQIFQHLTDDTLETLGLSLDFARPEWMILQSLPVPPPPVRPS 172

Query: 257  ----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
                      R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN
Sbjct: 173  ISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPEHIAKELQALLQYHVATYMDN 232

Query: 307  ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
            ++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GV
Sbjct: 233  DIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGV 292

Query: 367  PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
            P SIA  LTYPETVT +N ERLK+ V  GP   PG   A+YIIR+ G+R+DLR+ K    
Sbjct: 293  PRSIARTLTYPETVTQFNKERLKQFVTNGPDTHPG---ARYIIREQGERIDLRFHKDPKS 349

Query: 427  HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 486
              L  G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNADFD
Sbjct: 350  ITLLTGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFD 402

Query: 487  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
            GDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ +
Sbjct: 403  GDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462

Query: 547  DVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKGI 605
            +  MNI++W  D+DG +PQP I KPRP WTGKQV ++++P  +NL R     +    +  
Sbjct: 463  EEVMNIMLWIPDWDGVIPQPAIFKPRPRWTGKQVISMVLPPALNLVRIDGKPSQPPGERF 522

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
              AGD+ + +  G+LL G   KK++GT    +IH I+ E G + A  F    Q +VNYWL
Sbjct: 523  APAGDSGLFVADGQLLFGLFNKKSVGTGANGIIHTIFNEFGHETAMAFFNGAQTVVNYWL 582

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+FE+K
Sbjct: 583  LHNGFSIGIGDTVPDVGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESK 642

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            V+  LN ARDEAG++ + SL +SNN   M  AGSKGS INISQMTA VGQQ+VEGKRIPF
Sbjct: 643  VSAALNGARDEAGTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPF 702

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 703  GFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYI 762

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+K F
Sbjct: 763  QRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDKAFEKQF 822

Query: 906  RFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIATSGD 960
            R ++ E       + Q+ ++    I    +++ +FD E ++L  DR  L    + AT+ D
Sbjct: 823  RVDLMEPK---KLVWQDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRYIKKAATTAD 879

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
               PLP+N+ R++  A+ TFK+    PSD+HP  V+  V +L +RL VV G+D +S+EAQ
Sbjct: 880  EMMPLPMNILRILNQARTTFKIQLGCPSDLHPSYVIPKVKQLLDRLVVVRGDDRISLEAQ 939

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            +NATL     LRS  A KR++ E+ L R AF+ V+G +E+RF++++ +PGEM+G +AAQS
Sbjct: 940  ENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAVETRFIKAMASPGEMVGVLAAQS 999


>gi|157741510|gb|ABV69460.1| RNA polymerase II largest subunit, partial [Placidiopsis cinerascens]
          Length = 999

 Score =  971 bits (2511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1020 (50%), Positives = 681/1020 (66%), Gaps = 43/1020 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D  + + AL +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKA-VDSEELRFALSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGG---DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
             +  C+     +E D  G++    +K   GGCG  QP +   G+++ A+YK  RK +D++
Sbjct: 60   KQNVCQADSADEESDAFGKEKAGRIKH--GGCGNAQPAIRKTGLELWAQYKP-RKGDDEE 116

Query: 200  EQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV--- 256
            E +PE    K  +   + L V + ++D+  + LGL+  +ARP+WMILQ LP+PPPPV   
Sbjct: 117  ETVPE----KSQIWPAQALQVFQHLTDDTLETLGLSLDFARPEWMILQSLPVPPPPVRPS 172

Query: 257  ----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
                      R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN
Sbjct: 173  ISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDN 232

Query: 307  ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
            ++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GV
Sbjct: 233  DIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGV 292

Query: 367  PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
            P SIA  LTYPETVT +N ERLK+ V  GP   PG   A+YIIR+ G+R+DLR+ K    
Sbjct: 293  PRSIARTLTYPETVTRFNKERLKQFVTNGPDIHPG---ARYIIREQGERIDLRFHKDPKS 349

Query: 427  HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 486
              L  G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNADFD
Sbjct: 350  ITLLTGWKVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFD 402

Query: 487  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
            GDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ +
Sbjct: 403  GDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462

Query: 547  DVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKGI 605
            +  MNI++W  D+DG +PQP I KPRP WTGKQV ++++P  +NL R     +    +  
Sbjct: 463  EEVMNIMLWIPDWDGVIPQPAIFKPRPRWTGKQVISMVLPPALNLVRIDGKPSQPPGERF 522

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
              AGD+ + +  G L+ G   KK++GT    +IH I+ E G + A  F    Q +VNYWL
Sbjct: 523  APAGDSGLFVADGLLMFGLFNKKSVGTGANGIIHTIFNEFGHETAMAFFNGAQTVVNYWL 582

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+FE+K
Sbjct: 583  LHNGFSIGIGDTVPDVGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESK 642

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            V+  LN ARDEAG++ + SL +SNN   M  AGSKGS INISQMTA VGQQ+VEGKRIPF
Sbjct: 643  VSAALNGARDEAGTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPF 702

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 703  GFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYI 762

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M  + F+K F
Sbjct: 763  QRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDNAFEKQF 822

Query: 906  RFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIATSGD 960
            R ++ E       + Q+ ++    I    +++ +FD E ++L  DR  L    + AT+ D
Sbjct: 823  RVDLMEPT---KLVWQDRLEQASEIHGDVDVQKLFDVEYEQLVEDRRFLRYIKQAATTSD 879

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
               PLP+N+ R++  A+ TFK+    PSD+HP  V+  V +L +RL VV GED +S+EAQ
Sbjct: 880  EMMPLPMNILRILNQARTTFKIQSGSPSDLHPSYVIPKVKQLLDRLVVVRGEDRISLEAQ 939

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            +NATL     LRS  A KR++ E+ L R AF+ V+G +E+RF++++ +PGEM+G +AAQS
Sbjct: 940  ENATLLLKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAVETRFIKAMASPGEMVGVLAAQS 999


>gi|157741558|gb|ABV69484.1| RNA polymerase II largest subunit, partial [Thelidium pyrenophorum]
          Length = 999

 Score =  971 bits (2509), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1024 (50%), Positives = 684/1024 (66%), Gaps = 51/1024 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D    + A+ +R+ K R   I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEDLRYAVSVRDRKKRFDLIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGG------CGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D ++P  K KGG      CG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQHVCQA----DSP-EDEDDPNAKEKGGKLRHGGCGNAQPVIRKAGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +   + L V + ++DE  + LG+N  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEETVPE----KSQIWPAQALQVFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVTP+NI +LK L+  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTPFNISKLKNLIIRGPEHHPG---ARYIIRENNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
                 L++G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  LKGIALKVGWKVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     A    
Sbjct: 460  LSREAVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPPALNLVRIDG-KASQPP 518

Query: 604  G--ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            G     AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +V
Sbjct: 519  GERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVV 578

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+
Sbjct: 579  NYWLLHNGFSIGIGDTVPDFGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMNVRET 638

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV+  LN ARDEAG++ + SL + NN   MV AGSKGS INISQMTA VGQQ+VEGK
Sbjct: 639  FESKVSAALNGARDEAGTATENSLKDINNAIQMVRAGSKGSTINISQMTAIVGQQSVEGK 698

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 699  RIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 758

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M    F
Sbjct: 759  TGYIQRRLVKALEEVTVKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDHAF 818

Query: 902  DKAFRFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQLAT--EIA 956
            +K FR ++ E       + Q+ ++    I    +++ +FD E ++L  DR  L +  + A
Sbjct: 819  EKLFRVDLMEPK---KLVWQDRLEQASEIHGDVDVQKLFDEEYEQLTEDRNFLRSIKKAA 875

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            TSGD   PLP+N+ R++  A+ TFK+     SD+HP  V+  + +L +RL +V GED +S
Sbjct: 876  TSGDEMMPLPMNVVRILNQARTTFKIQSGALSDLHPSYVIPKIKQLLDRLIIVRGEDRIS 935

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
            +EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF++++ +PGEM+G +
Sbjct: 936  LEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKAIASPGEMVGVL 995

Query: 1077 AAQS 1080
            AAQS
Sbjct: 996  AAQS 999


>gi|397135840|gb|AFO11415.1| RNA polymerase I, partial [Kazachstania viticola]
          Length = 871

 Score =  970 bits (2508), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/886 (56%), Positives = 652/886 (73%), Gaps = 25/886 (2%)

Query: 192  QRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPI 251
            ++  ND +E  PE    ++ L  E +L + K IS +D   +G N ++ARP+WMIL VLP+
Sbjct: 1    EKTTNDTEE--PE----QRVLDTEEILNIFKHISSDDSNKMGFNEEFARPEWMILTVLPV 54

Query: 252  PPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIA 301
            PPPPV          R  DDLT +LA I++ N +L   E NGAP H I E   LL FHIA
Sbjct: 55   PPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLHFHIA 114

Query: 302  TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 361
            TY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP + +
Sbjct: 115  TYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLEL 174

Query: 362  DQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYL 421
            DQ+GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD+G R+DLRY 
Sbjct: 175  DQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDNGDRIDLRYS 231

Query: 422  KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPY 481
            K++ D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLNLSVTSPY
Sbjct: 232  KRAGDIQLQYGWKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPY 291

Query: 482  NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRD 541
            NADFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G R +T RD
Sbjct: 292  NADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRILTLRD 351

Query: 542  TFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN 601
            TF+E D  +N+L W  D+DG +P P I+KP+PLWTGKQ+ +  IPK I+L R      D 
Sbjct: 352  TFLEFDHVLNMLYWVPDWDGVIPPPAIIKPKPLWTGKQILSAAIPKGIHLQR-----FDE 406

Query: 602  DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
               +L+  D  + I  G+++ G + KKT+G+S+G LIHV+  E GP    +  G+ Q +V
Sbjct: 407  GTTLLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPQVCARLFGNIQKVV 466

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            N+WLL N FS GIGDTIA+ +T++ I +TI++AK  V+N+ K+AQ   L  + G T+ ES
Sbjct: 467  NFWLLHNGFSTGIGDTIANGETIKEITETIAEAKKKVENVTKEAQSNLLTAKHGMTLRES 526

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+ V + LN ARD+AG  A+ +L++SNN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGK
Sbjct: 527  FEDNVVRYLNEARDKAGRLAEVNLNDSNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGK 586

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIP+GFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+E
Sbjct: 587  RIPYGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAE 646

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDG+D+  IE Q++D++    S F
Sbjct: 647  TGYIQRRLVKALEDIMVHYDSTTRNSLGNVIQFVYGEDGIDASHIEKQSIDTIGGSDSAF 706

Query: 902  DKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDS 961
            +K +R ++     + +  L E   ++    +L+ + D E ++L +DR  L   +   G+S
Sbjct: 707  EKRYRIDLLNVKNSLDPTLLESGSEITGDLKLQSLLDQEYKQLVSDRAFLRN-VFVDGES 765

Query: 962  SWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQK 1021
            +WPLPVN++R+I NAQ TF++D  +PSD+   +++  ++ LQE L V+ G   +  +AQ 
Sbjct: 766  NWPLPVNIRRIIQNAQNTFRIDRSKPSDLTIRDIITRINTLQENLLVLRGXSDIIKKAQD 825

Query: 1022 NATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            +A   F  L+RS  A++RVL+E++LT+EAF WV+  IE++FL+S+V
Sbjct: 826  DAITLFCCLVRSRLATRRVLQEYKLTKEAFNWVVNNIEAQFLRSVV 871


>gi|397135850|gb|AFO11420.1| RNA polymerase I, partial [Saccharomycodes ludwigii]
          Length = 871

 Score =  970 bits (2508), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/888 (56%), Positives = 652/888 (73%), Gaps = 32/888 (3%)

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
            K  DD +Q PE    ++ L  + +L V K IS EDC  LG N +++RP+WMIL VLP+PP
Sbjct: 2    KGTDDTDQ-PE----QKVLLPDEILNVFKHISREDCWRLGFNEQFSRPEWMILTVLPVPP 56

Query: 254  PPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
            PPV          R  DDLT++L  I++ N N+++ E +G+P H+I +  +LLQ+H+ATY
Sbjct: 57   PPVRPSISFNESQRGEDDLTYKLGDILKANINVQKLELDGSPQHVIQDIEKLLQYHVATY 116

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP+A Q+SGRP+KSI +RLK KEGRIR NLMGKRVDFS RTVI+ DP + +DQ
Sbjct: 117  MDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRNNLMGKRVDFSGRTVISGDPNLELDQ 176

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD+G R+DLRY K+
Sbjct: 177  VGVPLSIARTLTYPEIVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDNGTRIDLRYSKR 233

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            + D  L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNA
Sbjct: 234  TGDIQLQYGWKVERHIVDNDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNA 293

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G RK+T + TF
Sbjct: 294  DFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLAGVRKLTLKSTF 353

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            IE D  +N+L W  ++DG VP PTI+KP+PLWTGKQV ++ IP  I+L R      D+  
Sbjct: 354  IEYDQVLNMLYWIPEWDGIVPPPTIIKPKPLWTGKQVLSMAIPSGIHLQR-----FDDGT 408

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
             +L+  D  + I  G+++ G + KKT+G+S+G LIHV+  E GP       G+ Q +VN+
Sbjct: 409  TMLSPKDNGILIIDGKIMFGVVDKKTVGSSSGGLIHVVTREKGPYVCASLFGNIQKVVNF 468

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            W L N FSIGIGDTIAD KTM  I ++I+ AK  V+ + K+AQ   L  + G T+ ESFE
Sbjct: 469  WFLHNGFSIGIGDTIADEKTMREITESIAVAKQKVEEVTKEAQANLLTAKHGMTLRESFE 528

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
            + V + LN ARD+AG SA+ +L + NN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI
Sbjct: 529  DNVVRFLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRI 588

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
             FGF DRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETG
Sbjct: 589  AFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETG 648

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRRLVKA+EDIMV YDGT RNSLG++IQF+YGEDG+D+  IE Q++D++    + F+K
Sbjct: 649  YIQRRLVKALEDIMVHYDGTTRNSLGNIIQFIYGEDGIDASHIEKQSIDTISGSDAAFEK 708

Query: 904  AFRFEMD--EENWNPNYML--QEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSG 959
             +R ++   E   NP  +    E + D+K    ++ + D E ++L  DR  L  ++   G
Sbjct: 709  RYRIDVLNPEHGLNPALLESGSEILGDVK----IQAILDEEYKQLLKDRSFL-RKVFVDG 763

Query: 960  DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEA 1019
            +++WPLP+N++R+I NAQ TFK+D  RP+D+   EVV +V +L  +L V+ G   +  EA
Sbjct: 764  ENNWPLPINIRRIIQNAQNTFKIDRTRPTDLTIPEVVNSVKELHSKLLVLRGRSEILKEA 823

Query: 1020 QKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            Q+NA   F+ L+RS  A +RV++E+RL RE F WV+  IES+FL+S+V
Sbjct: 824  QENAITLFSCLVRSRLACRRVVEEYRLNRETFRWVLDNIESQFLRSVV 871


>gi|157741562|gb|ABV69486.1| RNA polymerase II largest subunit, partial [Placopyrenium canellum]
          Length = 999

 Score =  970 bits (2507), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1023 (50%), Positives = 680/1023 (66%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D  + + A  +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEELRYAHSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P  D ++P+ K K      GGCG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQA----DSP-DDEDDPIAKEKSGKIRHGGCGNAQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +   + L V + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEEAVPE----KSQIWPAQALQVSQHLTDETLETLGLSVDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NIERLK+LV  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNIERLKQLVTNGPQMHPG---ARYIIRENNERIDLRYHKN 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            ++D  L  G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TADIALRTGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +    
Sbjct: 460  LAREEVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPPALNLVRIDGKSSQPPL 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+   +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VN
Sbjct: 520  ERFAPAGDSGPFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDVGTVEKIKYEVDKKKAEVERITQSAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E+I VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M  + F+
Sbjct: 760  GYIQRRLVKALEEITVKYDTTVRDSRGNILQFIYGEDGLDGAHIESQRVDVIAMSDNAFE 819

Query: 903  KAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E     W       E   ++    +++ +FD E ++L  DR  L      AT
Sbjct: 820  KQFRVDLMEPKKLAWQDRL---EQASEIHGDVDVQKLFDEEHEQLVEDRQFLRSVNLAAT 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            S D    LP+N+ R++  A+ TFK+    PSD+HP  V+  V +L +RL VV GED +S+
Sbjct: 877  SADEMMYLPMNVVRILNQARTTFKIQSGAPSDLHPSYVIPKVKQLLDRLIVVRGEDRISL 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF+++  +PGEM+G +A
Sbjct: 937  EAQENATLLMKAQLRSRLAFKRLVVEYSLNRLAFDHVVGAIETRFIRATASPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|440301955|gb|ELP94337.1| DNA-directed RNA polymerase II subunit RPB1, putative [Entamoeba
            invadens IP1]
          Length = 1650

 Score =  970 bits (2507), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 604/1687 (35%), Positives = 920/1687 (54%), Gaps = 177/1687 (10%)

Query: 11   EVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCT 70
            E  +V+ ++F ++S ++I++M+V+++   E  + GKP  GGLSDPR+G  D+  +C+TC 
Sbjct: 7    ETKRVQQIKFTLMSTEDIKKMAVLEVVKAEEVDDGKPVEGGLSDPRMGPFDKGDECKTCR 66

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP 130
               ++CPGHFG+++L  P+++  ++K +L +++ VC +C ++   +D+     +LK +  
Sbjct: 67   CTRSDCPGHFGYIQLYAPVYNPVYVKYILKVLKCVCPSCHRLYCHDDERL--NSLKSKG- 123

Query: 131  KNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQ-----PKLTIEGMKM 185
            + RLK + D   +K   + G   D  G + ++  ++    C + +     PK  +E  K+
Sbjct: 124  EERLKDVYDII-DKDYIQCGKRKDKKGAEKQQQHEEEDRICHSAKVDYELPKSKLEN-KL 181

Query: 186  IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
               YK    K ++ + +P              L +LK ++DED ++LG +PKY+ P +M+
Sbjct: 182  EIRYKGS--KAEESKFMPRDA-----------LNILKEMTDEDVKILGFDPKYSHPKFMV 228

Query: 246  LQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEF-- 292
             +V P+ PP VRP            DDLT     IIR NE L+ ++   +  +   E   
Sbjct: 229  FEVFPVAPPAVRPQAVSDKGSRNNKDDLTVMYENIIRANEELKNEQSKVSGINRYDEIFK 288

Query: 293  -AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              Q +   +      +LP  P     S +  KSI  RL  K+GR+R NLMGKRVDFSART
Sbjct: 289  EVQTICAKVCLKNVKDLPDNP-----SKKKYKSIEDRLSGKQGRMRLNLMGKRVDFSART 343

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VI+PDP +++D++GVP  IA  LT+PE VT YN+++L+ LV  G +  PG   A  + R 
Sbjct: 344  VISPDPNLSMDEVGVPTGIAKILTFPEVVTRYNMDKLQSLVNAGMNSYPG---AFMLQRK 400

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            +G+   L       D  L +G  V R L DGD+V+FNRQPSLH+MS+MGHR +++P+STF
Sbjct: 401  NGETFRL----NGGDKILNIGDVVHRFLMDGDYVIFNRQPSLHRMSMMGHRARVLPFSTF 456

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            R+NL  T+PYNADFDGDEMN+H+PQ+ E RAE+  LMM P  I++P+ N P+MGIVQDT 
Sbjct: 457  RMNLCDTTPYNADFDGDEMNLHIPQTLEARAEISVLMMTPTQIITPEKNCPIMGIVQDTQ 516

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
             G   ITKR TFIEK +F NIL W +  +  VP P ILKP+PLWTGKQVF LI+P  IN 
Sbjct: 517  CGSYIITKRQTFIEKLIFYNILQWLDKLNVTVPIPAILKPKPLWTGKQVFTLILPP-INY 575

Query: 592  FRTAAWHADNDKGILTA-----GDTLVRIEKGELLSGTLCKKT-LGTSTGSLIHVIWEEV 645
                  + D   G L        D+ V I KG L++G LC  +  G +   ++H I+++V
Sbjct: 576  -----ENGDYSIGTLLKKGPCYDDSKVYIHKGILVTGYLCNSSGFGKNQSGIVHSIYKDV 630

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G +A + F   TQ  VN W+L   F++G+GD +      + I + + K+  N +  +   
Sbjct: 631  GMEATKIFFNQTQATVNSWMLTRGFTVGLGDIVVKQDVHDRIREAVKKSIQNSEKYLDHK 690

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             D  +EP  G+TM ++ E K++ +L+  + E     + +L + NNL  MV +GSKGS  N
Sbjct: 691  HDDEIEPVAGQTMFQNLETKLSLLLSNVKTECDKITKDALKKDNNLLQMVDSGSKGSNSN 750

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQM A VG+Q +  +RIPFGF  RTLPH+ K+DYG  +RGF ENS++ GL+PQE FFHA
Sbjct: 751  ISQMVAFVGKQEINNQRIPFGFYKRTLPHYWKEDYGFVTRGFCENSFVMGLSPQEVFFHA 810

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GR+G+IDTA+KTSETGYIQRRLVK+MED+  KYD TVR + GD+++F+YG DG+D++ 
Sbjct: 811  MAGRQGIIDTAIKTSETGYIQRRLVKSMEDVQCKYDRTVRRTTGDMVEFMYGSDGVDALM 870

Query: 886  IESQ----TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEV 941
             ESQ     LD  KM  +   K    ++DE+N    Y       +LK I    DV+   +
Sbjct: 871  CESQKFPYCLDVNKMNDAS--KTVE-QVDEQNMKKLYQWDFSDPNLKNIVS-EDVYMVLL 926

Query: 942  --QKLEADR-------------YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRR 986
              + LEA R             Y  + ++         + V+  R I N   T      +
Sbjct: 927  SDECLEATRKEYDNVLNERAELYAASRQMIGVKPEDVHVVVHFDRQISNVIATSFNPFDK 986

Query: 987  PSDMHPMEVVEAVDKLQERLK---VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKE 1043
              D+ P  V+E  + L +RL    V    D    E   +A   F+ L+ +  +SK+ +  
Sbjct: 987  GVDLDPKYVIEQENNLVKRLAEVGVSKTPDAEDKERAIDALRPFSYLMHAKLSSKQCILG 1046

Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
            +R+ + AF+ ++  +E+ +L S V PGEMIG +AAQSIG PATQMTLNTFH+AG S   V
Sbjct: 1047 YRMCKAAFDDLMKRMENIYLHSRVNPGEMIGSIAAQSIGAPATQMTLNTFHHAGTSEATV 1106

Query: 1104 TLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERA-KNVQCALEYTTLRSVTEATEVW 1162
            T GVPRL+E++N++K  KTPS++V+L    +  K    K +   + +T L+ + E  E+W
Sbjct: 1107 TEGVPRLKELLNMSKMPKTPSMTVWLTVDPDEKKSVLDKELNTKIPFTLLKDLVEKVEIW 1166

Query: 1163 YDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIEL--NREMMVDKKLSMAAVA 1220
            +DP+   +++EED EF+  Y E+   DI  EK S W +R+ L  N+ + +   +    + 
Sbjct: 1167 FDPNLRESVVEEDREFLAEYAEI--SDINQEKYSKWTIRMLLGYNKIVAMGIDVDNDNLK 1224

Query: 1221 EKINQEFDDDLTCIFND-----DNADKLILRIRIMNDEAPKGE----------------- 1258
            ++++ +F   L  I +D     D + K++L IR  + +  + +                 
Sbjct: 1225 KRVSDKFPSCLV-IQSDSNHVVDGSVKIVLYIRFPDSDVARCDSIENLTRALSSDREPVA 1283

Query: 1259 ---------LNDESAEDDVFLKKI--------------ESNMLTE-----MALRGVNLLA 1290
                     LND      V + KI              E+ +L E     +   G N++ 
Sbjct: 1284 FHKKMIDQILNDVQISGVVGISKIIIRDKPTPFLVIDPETKLLHEKKQWVIFTEGSNMVG 1343

Query: 1291 VMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM 1350
            +   E+VD  +T +N++ E+ + LGIEA R  L  E    +S  GSYVNYRHL +L D M
Sbjct: 1344 LTQFEEVDFTKTVTNNVYEVYQFLGIEAGRIQLASEFIKCLS--GSYVNYRHLGLLADVM 1401

Query: 1351 TYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAP 1410
            T+ G +  + R G++R+  G + R SFE+T++    AA F ESD L GV++N+++GQ   
Sbjct: 1402 THTGRVEPVNRMGLSRSHAGVITRASFEQTLEQFRRAAAFGESDMLNGVSQNVLMGQRTI 1461

Query: 1411 IGTGDCS----------LYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGM 1460
            +GTG  +          L ++ E+L ++ E +     +GL       ++ V  +P    +
Sbjct: 1462 VGTGAFTVLIDVEKLQRLNVDAEVLDDSEESEDVKAWDGLMMSPIKQKASVQFSPSRSQL 1521

Query: 1461 ---MSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSP 1517
                  GY        SP+ + Q      G  F  +  P  +P+ P  + +S      SP
Sbjct: 1522 PNKTQMGY-------QSPIYNTQM-----GQGFKTSPRPMVTPAMPVQTNTSSFNKFASP 1569

Query: 1518 GYSPTSP----GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP 1573
                 SP      SP   G +  SP +      Y  +SP  +  SP+++  SP  S  +P
Sbjct: 1570 SLGGASPYIIQNASPILFGAAQASPLFRSGPSPYQMSSPQ-NFASPNFA--SPQLSRPTP 1626

Query: 1574 SYSPTSP 1580
             ++  SP
Sbjct: 1627 PFTQFSP 1633


>gi|157741570|gb|ABV69490.1| RNA polymerase II largest subunit, partial [Verrucaria cyanea]
          Length = 999

 Score =  969 bits (2506), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1023 (49%), Positives = 681/1023 (66%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D  + + AL +R+ K R + +    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKAI-DSEELRYALSVRDRKKRFELVWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+  D +    +D ++PL K K      GGCG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQA-DGL----EDDDDPLGKEKAGKIRHGGCGNAQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++  +PE    K  +   + L V + ++D+  + LGLN  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEVTVPE----KSQIWPAQALQVFQHLTDDTLETLGLNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP S+A  LTYPETVT +N+ RLK LV  GP   PG   A+YIIR+  +R+DLRY K 
Sbjct: 290  VGVPRSVARVLTYPETVTLFNMGRLKRLVTNGPENHPG---ARYIIREHNERIDLRYHKN 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
              D  L++G+K+ERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  PGDIVLKVGWKIERHIQDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +    
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMISMVLPPALNLVRIDGKSSQPPG 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  G+L+ G   KK++GT +  ++H I+ E GP+ A  F    Q +VN
Sbjct: 520  ERFAPAGDSGLFVSDGQLMFGLFNKKSVGTGSNGIVHTIFNEFGPETATSFFNGAQTVVN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDVGTVEKIKLEVDKKKTEVERITQSAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AG KGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGPKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFE 819

Query: 903  KAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLAT--EIAT 957
            K FR ++ E     W       E   ++    +++ +FD E ++L  DR  L +  + AT
Sbjct: 820  KQFRVDLMEPKKLAWQGRL---EQASEIHGDVDVQKLFDEEYEQLVEDRKFLRSIKKAAT 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            S D   PLP+N+ R++  A+ TFK+     SD+HP  V+  + +L +RL VV GED +S+
Sbjct: 877  SSDEMMPLPMNIVRILNQARTTFKIQTGVASDLHPSYVIPKIGQLLDRLIVVRGEDRISL 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ NATL   + LRS  A KR++ E+ L R AF+ VIG IE+RF+++  +PGEM+G +A
Sbjct: 937  EAQDNATLLIKVQLRSRLAFKRLVMEYSLNRLAFDHVIGAIETRFIKAGASPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|157741572|gb|ABV69491.1| RNA polymerase II largest subunit, partial [Verrucaria dolosa]
          Length = 999

 Score =  969 bits (2505), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1029 (49%), Positives = 681/1029 (66%), Gaps = 61/1029 (5%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D  + + A  +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEELRYAHGVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C      D P +DG++P+ K K      GGCG  QP++   G+++ A+YK  RK +
Sbjct: 60   KQNVCLA----DAP-EDGDDPMAKEKSGKISHGGCGNAQPQIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +   + L V + ++DE  + LG++  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEEAVPE----KSQIWPAQALQVFQHLTDETLETLGMSLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIARELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK+ V  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTQFNISRLKQFVTNGPEMHPG---ARYIIRENNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PY+A
Sbjct: 347  TSGIALKTGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYDA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+H PQS ETRAE+  L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHAPQSEETRAELSRLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     A    
Sbjct: 460  LSREDVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPPALNLVRIDG-KASQPP 518

Query: 604  G--ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            G     AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q ++
Sbjct: 519  GERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVI 578

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+
Sbjct: 579  NYWLLHNGFSIGIGDTVPDVGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMNVRET 638

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV+  LN ARDEAGS+ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGK
Sbjct: 639  FESKVSAALNGARDEAGSATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGK 698

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 699  RIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 758

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F
Sbjct: 759  TGYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAF 818

Query: 902  DKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATE------- 954
            ++ FR ++ E    P  ++  + D L+   E+    D +VQKL  D Y+   E       
Sbjct: 819  ERQFRVDLME----PKKLV--WQDRLEQASEIHG--DVDVQKLFDDEYEQLVEDRRFLRY 870

Query: 955  ---IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG 1011
                ATS D   PLP+N+ R++  A+ TFK+     SD+HP  V+  V +L +RL +V G
Sbjct: 871  IKKAATSSDEMMPLPMNVVRILNQARTTFKIQSGALSDLHPSYVIPKVKQLLDRLVIVRG 930

Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
            ED +S+EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF+++  +PGE
Sbjct: 931  EDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKATASPGE 990

Query: 1072 MIGCVAAQS 1080
            M+G +AAQS
Sbjct: 991  MVGVLAAQS 999


>gi|157741494|gb|ABV69452.1| RNA polymerase II largest subunit, partial [Endocarpon adscendens]
          Length = 999

 Score =  969 bits (2504), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1024 (50%), Positives = 682/1024 (66%), Gaps = 51/1024 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D    + AL +RN K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEDLRYALTVRNSKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQ------QPKLTIEGMKMIAEYKAQRKKN 196
                C+     D P +D E+P  K +GG          QP++   G+++ A+YK  RK +
Sbjct: 60   KLNICQA----DNP-EDEEDPAAKERGGKVGHGGCGNAQPQIRRSGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            DD+E +PE    +  +   + L V + ++DE    LGLN  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DDEETVPE----ESQIWPAQALEVFQHLTDETLDTLGLNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI +LK+LV  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISKLKQLVTNGPEAHPG---ARYIIRENNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKTGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I KP P WTGKQ+ ++++P  +NL R     +    
Sbjct: 460  LSREQVMNIMLWVPDWDGVIPQPAIFKPGPRWTGKQMISMVLPPALNLVRIDGKASQPPI 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  GEL+ G   KK++GT +  +IH I+ E G + A  F    Q ++N
Sbjct: 520  ERFAPAGDSGLFVSDGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVIN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YW L N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWFLHNGFSIGIGDTVPDIGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL +SNN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFE 819

Query: 903  KAFRFEMDEENWNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIA 956
            K FR ++ E    P  ++ Q+ ++    I    +++ +FD E ++L  DR  L    + A
Sbjct: 820  KLFRVDLME----PKKLVWQDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAA 875

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            TS D   PLP+N++R++  A+ TFK+    PSD+HP   +  V +L +RL +V G+DP+S
Sbjct: 876  TSADEMMPLPMNVQRILNQARTTFKIQSGAPSDLHPTYAIPKVQQLLDRLVIVRGDDPIS 935

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
            +EAQ NATL    LLRS  A KR++ E+ L R AF+ V+G IE+RF+++   PGEM+G +
Sbjct: 936  LEAQNNATLLIKALLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKAAANPGEMVGVL 995

Query: 1077 AAQS 1080
            AAQS
Sbjct: 996  AAQS 999


>gi|111278801|gb|ABH09098.1| RNA polymerase II largest subunit [Pyrenula pseudobufonia]
          Length = 1007

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1024 (47%), Positives = 682/1024 (66%), Gaps = 41/1024 (4%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILA-DEDDHKFKQALKIRNPKNRLKKILDA 140
            H+ELA P++H GF+K V  I+ +VC NC K+ A D    + + A  I N + R +K+   
Sbjct: 1    HIELAVPVYHHGFLKMVKKILETVCHNCGKVKAIDVSGEELRLAKAIPNKRTRFEKVWQL 60

Query: 141  CKNKTKCEGGDEIDVPGQDGEEPLKKNKG-------GCGAQQPKLTIEGMKMIAEYKAQR 193
             K    CE     D+  ++G++   K KG       GCG  QP++ + G+ ++  +K  +
Sbjct: 61   SKKHRICEA----DIS-EEGDQEFSKEKGPPRPKHGGCGNAQPEIRLSGLNLMTSWKPTK 115

Query: 194  KKNDDQEQLPEPVERK-QTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV---- 248
              ++      EPV+ + + LT    L +L+ ++DE+ + +GL+ K ARP+WMIL V    
Sbjct: 116  DGDN------EPVQAETRPLTPPTALNILRLMNDEEMEEIGLDTKNARPEWMILSVLPVP 169

Query: 249  ---------LPIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFH 299
                     +       R  DDLT +L  I+R N+N+RR ++ G+P HI++E  QLLQ+H
Sbjct: 170  PPPVRPSISMDGSGQGARGEDDLTFKLGDIVRANQNVRRVQQEGSPEHILNEHVQLLQWH 229

Query: 300  IATYFDNELPGQP--RATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
            +ATY +N++ G    +A  ++GRPIKSI +RLK K+GR+R NLMGKRVDFSARTVIT DP
Sbjct: 230  VATYMNNDIAGMDGLKAQHKTGRPIKSIRARLKGKDGRLRQNLMGKRVDFSARTVITGDP 289

Query: 358  TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
             +++D++GVP SIA NLTYPE VTP+N+++LK LV  GP   PG   A++++RDDG R+D
Sbjct: 290  NLSLDEVGVPRSIARNLTYPEVVTPFNVDKLKRLVANGPTEHPG---ARFVVRDDGTRID 346

Query: 418  LRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 477
            LR+ K++S+  L+ G+KVERH++ GD +LFNRQPSL        R+++MPYSTFRLNLSV
Sbjct: 347  LRHHKRTSELTLQFGWKVERHISHGDIILFNRQPSLXXXXXXXXRVRVMPYSTFRLNLSV 406

Query: 478  TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
            T+PYNADFDGDEMN+HVPQS E RAE+  L MVP  IVSPQ N P+MGIVQDTL G  KI
Sbjct: 407  TTPYNADFDGDEMNLHVPQSEEARAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKI 466

Query: 538  TKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAW 597
             +RD F+ ++  MN ++W  D+DG +PQP +LKPRP WTGKQV ++++P  +NL R    
Sbjct: 467  CRRDVFLSREQVMNTMLWVPDWDGVIPQPAVLKPRPRWTGKQVISMVLPPNLNLVRIDKD 526

Query: 598  HADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHT 657
              +  +      D  + +++GEL+ G   KK++GTS G +IH ++ E GP+ A  F    
Sbjct: 527  SGEEYERFSPLADGGLFVDRGELMFGLFNKKSVGTSAGGIIHTVFNEFGPETAMAFFNGA 586

Query: 658  QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
            Q +VNYWLL   FSIGIGDT+ D  T+E+I + +++ K+ V+++ ++AQ++ LE +PG  
Sbjct: 587  QTVVNYWLLHYGFSIGIGDTVPDNATVESIKEQVNQRKSEVESITQKAQNQELEAQPGMN 646

Query: 718  MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
            + E+FE+KV + LN ARD AG + + SL + NN   M  AGSKGS INI+QMTA VGQQ+
Sbjct: 647  VRETFESKVAKALNDARDGAGGATESSLKDLNNAIQMARAGSKGSTINIAQMTAIVGQQS 706

Query: 778  VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
            VEGKRIPFGF  RTLPHF KDDY  +SRGFVENSYLRGLTP EFFFHAM GREGLIDTAV
Sbjct: 707  VEGKRIPFGFKYRTLPHFAKDDYSAQSRGFVENSYLRGLTPSEFFFHAMAGREGLIDTAV 766

Query: 838  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
            KT+ETGYIQRRLVKA+E+  V+YD TVR++ G+V+QF+YGEDG+D   IE+Q +D + M 
Sbjct: 767  KTAETGYIQRRLVKALEETTVRYDNTVRDARGNVVQFIYGEDGLDGAHIENQRVDVITMS 826

Query: 898  KSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIAT 957
               F+K +R ++ E+   P +       D +   E + + D E  +L  DR  L +    
Sbjct: 827  DEAFNKRYRVDLMEK--APQFPKGRLETDFRADVERQQLLDEEYDQLREDRAFLRS-FRK 883

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
              D    LP+N+ R+I  A+ TFKVD  +  ++ P  V+  V +L   L VV G+D +S 
Sbjct: 884  GSDEMMQLPLNILRIIDQAKTTFKVDATQTCNLDPKHVIPEVQRLLRELVVVRGDDTISD 943

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ NATL F   LRS  A KR++ E+RL+  AF  VIG ++SR++++   PGEM+G +A
Sbjct: 944  EAQTNATLLFKAQLRSRLAFKRLVNENRLSTVAFNHVIGNVKSRWVKAQAQPGEMVGVLA 1003

Query: 1078 AQSI 1081
            AQSI
Sbjct: 1004 AQSI 1007


>gi|157741518|gb|ABV69464.1| RNA polymerase II largest subunit, partial [Placidium lacinulatum]
          Length = 989

 Score =  968 bits (2503), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1016 (49%), Positives = 678/1016 (66%), Gaps = 55/1016 (5%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D  + + AL +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-LDSEELRYALSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGG------CGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D ++P+ K KGG      CG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQA----DAP-EDEDDPIVKEKGGKIRHGGCGNAQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +   + L V + ++DE  + LG+N  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEETVPE----KSQIWPAQALQVFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK+ V  GP   PG   A+YIIR+  +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEMHPG---ARYIIREHNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L++G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKVGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELSQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            + ++  MNI++W  D+DG +PQP I+KPRP WTGKQ+ ++++P  +NL R       + K
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIVKPRPRWTGKQMVSMVLPPALNLVRI------DGK 513

Query: 604  GILT-------AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGH 656
              L        AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F   
Sbjct: 514  ASLPPGERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNG 573

Query: 657  TQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR 716
             Q ++NYWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG 
Sbjct: 574  AQTVINYWLLHNGFSIGIGDTVPDVGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGM 633

Query: 717  TMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 776
             + E+FE+KV+  LN ARDEAGS+ + SL +SNN   M  AGSKGS INISQMTA VGQQ
Sbjct: 634  NVRETFESKVSAALNGARDEAGSATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQ 693

Query: 777  NVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 836
            +VEGKRIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTA
Sbjct: 694  SVEGKRIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTA 753

Query: 837  VKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKM 896
            VKT+ETGYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IE+Q +D + M
Sbjct: 754  VKTAETGYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIENQRVDVIAM 813

Query: 897  KKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATE 954
                F+K FR ++ E      +   E   ++    +++ +FD E ++L  DR  L    +
Sbjct: 814  SDDAFEKQFRVDLMEPKKLVRHDRLEQASEIHGDVDVQKLFDEEYEQLLEDRKFLRYIKK 873

Query: 955  IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDP 1014
             ATS D   PLP+N+ R++  A+ TFK+    PSD+HP  V+  V +L ERL +V G+D 
Sbjct: 874  AATSADEMMPLPMNVVRILNQARTTFKIQSGGPSDLHPSYVIPKVKQLLERLTIVRGDDS 933

Query: 1015 LSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            +S+EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF++++ +PG
Sbjct: 934  ISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKAIASPG 989


>gi|157741592|gb|ABV69501.1| RNA polymerase II largest subunit, partial [Verrucaria marmorea]
          Length = 999

 Score =  968 bits (2502), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1023 (49%), Positives = 684/1023 (66%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D  + + AL +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKA-LDSEELRYALSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D ++P  K+K      GGCG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNICQA----DGP-EDEDDPNAKDKVSKIRHGGCGNAQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            +++E +PE    K  +   + L V + ++D+  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  EEEESVPE----KSQIWPAQALQVFQHLTDDTLETLGLSLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +N+ +LK+LV  GP+  PG   A++I+R++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTLWNMGKLKQLVVNGPNNHPG---ARFIVRENNERIDLRYHKN 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S+  L++G+KVERH+ DGDF+LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSEITLKVGWKVERHIKDGDFILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + +D  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +    
Sbjct: 460  LSRDEVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMISMVLPPALNLVRIDGKASQPPA 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G +    FL   Q +VN
Sbjct: 520  ERFAPAGDSGLFVSDGQLMFGLFNKKSVGTGSNGIIHTIYNEFGHETCMAFLNGAQTVVN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDVGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAGS+ + SL + NN   M  AGSKGS INISQMTA  GQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGSATENSLKDINNAITMARAGSKGSTINISQMTAIAGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVE+SYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVESSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR S G+++QF+YGEDG+D   IESQ +D + M    F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRGSRGNIVQFIYGEDGLDGGHIESQRVDVIAMSDDAFE 819

Query: 903  KAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E     W       E   ++    +++ +FD E  +L  DR  L    + AT
Sbjct: 820  KQFRVDLMEPKKLVWRDRL---EQASEIHGDVDVQKLFDEEYDQLLEDRKFLRHMKKAAT 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            S D   PLP+N+ R++  A+ TFK+     SD+HP  V+  V +L +RL +V GED +S+
Sbjct: 877  SSDEMMPLPMNIVRILNQARTTFKIQTGAASDLHPSYVIPKVRQLLDRLIIVRGEDKISL 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ+NATL     LRS  A KR++ EH L R AF+ VIG +E+RF+++  +PGEM+G +A
Sbjct: 937  EAQENATLLIKAQLRSRLAFKRLVMEHSLNRLAFDHVIGAVETRFIKATASPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|74830406|emb|CAI39063.1| DNA-directed RNA polymerase II largest subunit [Paramecium
            tetraurelia]
          Length = 1751

 Score =  968 bits (2502), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 640/1827 (35%), Positives = 965/1827 (52%), Gaps = 286/1827 (15%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSV-VQIEHGETTE-RGKPKPGGLSDPRLGTIDR 62
            F YS A +AKVR V+FG++S + I++ +  ++I+  +T E  G PK  GL+D R+G    
Sbjct: 8    FTYSTAPIAKVRRVEFGLMSHELIKEWTGDIEIKELQTNELDGTPKQNGLNDLRMGVNTN 67

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD---H 119
              KC+TC      C GHFG +EL KP++H+GF++ V  +++ +C +C K+   + +    
Sbjct: 68   AQKCKTC-GETKYCQGHFGRIELNKPVYHVGFLQIVKKVLKCICHSCGKLRQPQSEDAWQ 126

Query: 120  KFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQP-KL 178
             F++A + R  + RL +I+       KCE         +  +E  + N   CG + P ++
Sbjct: 127  SFQKAKEHRLNRKRLNEIVKLLGRIEKCE-------TSKHKQEENQGNDDFCGEKIPTRI 179

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
                 ++  +Y  +              E  + LTAER L + K+I DED  +LG   K 
Sbjct: 180  QAINGQIKIQYNTK--------------EAAKELTAERCLEIFKKIRDEDAIILGFT-KD 224

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            +RP  +I++ L + PP VRP+          D  T     I++ N  +     +     +
Sbjct: 225  SRPRDLIIKFLLVMPPQVRPAIEMNPARIAQDQYTQIYKSILQKNNEIANCSSDAERVRL 284

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
              E  +     +A   D+E  G+ +   +S +P+KSI +RLK KEGR R NLMGKRVDF 
Sbjct: 285  APELMR----EVAKIIDSEKAGKIKM--KSTQPLKSIRARLKGKEGRFRQNLMGKRVDFC 338

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
            AR+VI+PD  + +D+LGVP  +A  LT PE VT YN+ER+ +L +            KY+
Sbjct: 339  ARSVISPDANLGMDELGVPQIVADQLTIPEEVTEYNLERVIQLAK--------TNKIKYV 390

Query: 409  I------RDDGQRLDLRYL-----KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 457
            I      R   ++    Y      +      +  G  VER L DGDFVLFNRQP+LH+MS
Sbjct: 391  IVPITDPRSKQRKFQALYFDFTDTEDQIRQKINQGVIVERCLQDGDFVLFNRQPTLHRMS 450

Query: 458  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 517
            +MGHR++I+PYSTFRLNLSV +PYNADFDGDEMNMHVPQS+ET AE+  L  VP+ IV+P
Sbjct: 451  MMGHRVRILPYSTFRLNLSVCTPYNADFDGDEMNMHVPQSYETIAELKYLAHVPRQIVTP 510

Query: 518  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTG 577
            +SN+PVMGIVQD+LLGC   T+RDTF+ +D  M+++MW E F G++P P ILKP+ LWTG
Sbjct: 511  KSNQPVMGIVQDSLLGCCLFTQRDTFLTRDQVMHLMMWNEQFTGELPMPAILKPQELWTG 570

Query: 578  KQVFNLIIPKQINL--------FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKT 629
            KQ+ ++IIP+ IN          R   W+AD DK +         I++G L+SG   K+ 
Sbjct: 571  KQIMSMIIPQSINTERGIREDDLRKPNWNAD-DKSLC--------IQRGSLVSGIFNKEL 621

Query: 630  LGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETIND 689
            +G   GS++H+ W ++G +   +F+   Q +VN WL+ ++F++G  D    A  +  + +
Sbjct: 622  VGQGAGSVVHLCWLDLGAEKTLEFMTSCQRIVNNWLIMHSFTVGCQDI---APHINLVAE 678

Query: 690  TISKAKNNVKNLI---------KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSS 740
            T  ++K   +  I         K+ QD     + G+ +M+SFE   N  LN  RD+  S 
Sbjct: 679  TEKRSKEQDEEYIKLLQIFLDAKKIQDNRYH-QKGKRIMDSFEYSFNMKLNKVRDDINSK 737

Query: 741  AQKSLSESNN-LKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDD 799
              +++ +  N +  M+ A SKG   N++Q+T+ VGQQN+E KRI FGF  RTLPHF+K D
Sbjct: 738  VTETIDQIRNCMYKMIWAKSKGEASNLAQITSLVGQQNLESKRIQFGFAYRTLPHFSKFD 797

Query: 800  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
            YGPE+RGFV +++ +GL P EFFFH MGGR+GLIDTAVKTS TGYIQR+L+KA+ED+ V+
Sbjct: 798  YGPEARGFVASNFFKGLKPTEFFFHTMGGRDGLIDTAVKTSRTGYIQRKLIKAVEDVFVR 857

Query: 860  YDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYM 919
            YD + R+S+G V QF YGED M + +IE Q +  + +  ++ ++  ++E+ +E W  + +
Sbjct: 858  YDSSCRDSVGAVYQFHYGEDKMAAEFIEHQEIKCVNLSNAQLEE--KYELIKEQWFGSEI 915

Query: 920  LQEYIDDL--KTIKELRDVFDA---------EVQKLEADRYQLATEIATSGD---SSWPL 965
             Q+Y + L    IK++ + F+          E++K+  +  +L    +   +   + + L
Sbjct: 916  RQKYQNILTEDVIKDIEEDFEGQALLKGEFDEIKKIRNELRRLFLIDSAPKEELFTHYYL 975

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
             VN++R+I   +   K+  R    ++P+ V + VD+L +++  +   D   +E +K+   
Sbjct: 976  VVNIERIISTIKINKKISDREKCRLNPIYVTQQVDELIQKVDKLLSYD---LEERKDCIN 1032

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPA 1085
             F   L+ + ASK +   HRLT EAF+ +I EI  +  +S+  PGE +G +AAQS+GEP 
Sbjct: 1033 LFRTHLKVSLASKDLCCRHRLTPEAFQELISEIIYKLKKSMAHPGEAVGAIAAQSLGEPT 1092

Query: 1086 TQMTLNTFHYAGVSA-KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKN-- 1142
            TQMTLNTFH +GV+  KNVTLGVPRL+E+++ +KK KTPSL+++  P +   +   K+  
Sbjct: 1093 TQMTLNTFHKSGVTGDKNVTLGVPRLQELLDASKKTKTPSLTIYFDPPLEYAELELKDDK 1152

Query: 1143 ---------------------------VQCALEYTTLRSVTEATEVWYDPDPMGTI-IEE 1174
                                       +Q  +   T       +E++Y  DP   + I E
Sbjct: 1153 DKKSYLKTEQLVHPHKQDDFTQSMLVQMQGRILGQTFGQYIIKSEIYYQSDPNNPLHITE 1212

Query: 1175 DVE--FVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDD--- 1229
            D E  F    +   D+D A  K   W+L + ++ + ++    +   + + I +  D+   
Sbjct: 1213 DQEDNFTDGIF---DQDEAKYK---WILFLHMDHQKILSNLETWDKIRDSIPKILDETQV 1266

Query: 1230 -----DLTCIFNDDNADKLILRIRIMND---------EAPKGELNDESAEDD-------- 1267
                     I + D+ +   ++I+  +D         E  KG  +DE A D+        
Sbjct: 1267 KFGISSQNTIVDPDSMNHKYIQIKYFHDYADQKKFKPERGKGNFDDEIAFDEENKTKTYV 1326

Query: 1268 ----VFLKKIESNMLTEMALRGVNLLAVMCH----------------------------- 1294
                  LK++E   +   +L G++ +  + H                             
Sbjct: 1327 DTPYTILKRLEET-IRGYSLGGISKITRILHSQIEKQFYINNKTGGFLKQANVDGKGKWK 1385

Query: 1295 -------------------EDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
                               E VD RRTT++ + EI +VLGIEA R AL+ E R + +  G
Sbjct: 1386 IIEKYLETEGTNLKEILRLEHVDQRRTTTDDVYEISQVLGIEAARAALVGETRKIFNHYG 1445

Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRN-DTGPMMRCSFEETVDILLDAAVFAESD 1394
             Y+NYRHL +L D MT+RG L A+ R+GINR  +   + + SFEETV+IL DAAVF+E D
Sbjct: 1446 IYINYRHLYLLYDWMTHRGRLTAVNRNGINRIPEVSVLRKSSFEETVEILYDAAVFSEID 1505

Query: 1395 YLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS-----YMEGLEFGMTPARS 1449
            ++RG++ENI+ GQL P GTG   L +N    KN  E +L S     + +G E+       
Sbjct: 1506 HMRGLSENIIFGQLCPHGTGCFELMVN---AKNVKEFKLKSSHADKFTQGGEY------- 1555

Query: 1450 PVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSP-- 1507
                +PY     +P  L +P                      P  S G+  +SP Y+P  
Sbjct: 1556 LAEQSPYDQNQQTPLMLNTP---------------------GPGVSQGFIENSP-YTPYH 1593

Query: 1508 SSPGYSPTSPG--YSPTSPGYSPTSPGYSPTSPT----YSP--SSPGYSPTSPAYSPTSP 1559
             SP    T  G  Y+P S   SP  P  +P  P      SP  S  G   +    +  S 
Sbjct: 1594 KSPANFATPFGREYTPNSSHCSPFYPN-TPLMPNDPYQLSPVGSDSGIQQSVQKQANVSD 1652

Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY-SPTSPAY- 1617
            S+SP SP Y+  + S SP+  S    +     +S S S + PS + TS  Y SP SP   
Sbjct: 1653 SHSPGSPHYTSHTNSPSPSYRSSERATSGQRSSSISISLSPPSPNYTSSVYNSPLSPTNT 1712

Query: 1618 -SPTSPAYSPTSPS---YSPTSPSYSP 1640
             SP  P  SP SP    ++  SP Y P
Sbjct: 1713 GSPRVPTGSPHSPQGSIFTTYSPVYQP 1739



 Score = 43.5 bits (101), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 79/189 (41%), Gaps = 22/189 (11%)

Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS 1618
            P  S      SP +P +   +   +P    Y+P S   SP  P+ +P  P   P   +  
Sbjct: 1577 PGVSQGFIENSPYTPYHKSPANFATPFGREYTPNSSHCSPFYPN-TPLMPN-DPYQLSPV 1634

Query: 1619 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1678
             +      +    +  S S+SP SP Y  TS + SP SPSY  +  A S    G   +S 
Sbjct: 1635 GSDSGIQQSVQKQANVSDSHSPGSPHY--TSHTNSP-SPSYRSSERATS----GQRSSSI 1687

Query: 1679 SYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTS 1738
            S S + P+ + TS  YN            SP SP  +  SP  PT   +SP  S ++  S
Sbjct: 1688 SISLSPPSPNYTSSVYN------------SPLSP-TNTGSPRVPTGSPHSPQGSIFTTYS 1734

Query: 1739 PSYSPSSPT 1747
            P Y P   T
Sbjct: 1735 PVYQPGGGT 1743


>gi|83320466|gb|ABC02860.1| RNA polymerase II largest subunit, partial [Synchytrium
           macrosporum]
          Length = 808

 Score =  968 bits (2502), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/822 (57%), Positives = 599/822 (72%), Gaps = 36/822 (4%)

Query: 82  HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
           H+ELAKP+FH GF+  +  ++ +VC +C +I  D+ +  FK+AL++ + K R   +   C
Sbjct: 1   HIELAKPVFHAGFLVKIKKVLETVCCSCGEIKLDDTNEAFKRALRMTDRKKRFNAVWKLC 60

Query: 142 KNKTKCEGGDEID---VPGQDGEEPLKKNK----GGCGAQQPKLTIEGMKM-IAEYKAQR 193
            +K +CEG  E D       + +E   K K    GGCGA QP    +G+ + + E + + 
Sbjct: 61  ASKKECEGSSEDDDFMADADNNQEGRGKKKNSTHGGCGASQPTFRKKGLSLEMVERQTKD 120

Query: 194 KKNDD---QEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP 250
            +  D   + ++  P E KQ         + + ISD+D + +G +P Y+RP+WM++ +LP
Sbjct: 121 SEGGDLAGKGRVIAPGEVKQ---------LFESISDDDAEAMGFSPDYSRPEWMVISILP 171

Query: 251 IPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHI 300
           +PP  VRPS          DDLTH+L  I++ N  L++ E++GAP  II EF  LLQ+ +
Sbjct: 172 VPPMAVRPSVHQEGLGRSEDDLTHKLMDILKANNTLKKNEQDGAPQQIIREFEALLQYQV 231

Query: 301 ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTIN 360
           AT  DN+L G P++ Q+S RPIKSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP ++
Sbjct: 232 ATLMDNDLAGVPQSLQKSRRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLS 291

Query: 361 IDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRY 420
           IDQ+GVP SIA N+T+PE VTP+NIE L + VE GP+  PG   AK++IRD+G R+DLR+
Sbjct: 292 IDQVGVPRSIAKNMTFPEKVTPFNIEVLTKTVENGPNEHPG---AKFVIRDNGDRIDLRH 348

Query: 421 LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSP 480
            +  +   L++GY VERH+ D D V+FNRQPSLHKMS+MGHR+K+MPYSTFRLNLSVT+P
Sbjct: 349 ARAGA-IALQVGYIVERHMRDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTTP 407

Query: 481 YNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKR 540
           YNADFDGDEMN+H+PQS+ET AE++EL +VPK IVSPQ N PVMGIVQDTL G RK TKR
Sbjct: 408 YNADFDGDEMNLHLPQSYETAAEIVELCIVPKQIVSPQKNAPVMGIVQDTLCGVRKFTKR 467

Query: 541 DTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD 600
           DTF++ D+ MN+LMW  D+DG +P P I+KP PLWTGKQ  +LIIP  INL    A H D
Sbjct: 468 DTFLDMDIMMNLLMWVPDWDGTLPTPCIIKPIPLWTGKQAMSLIIP-NINLTAYHAAHPD 526

Query: 601 NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGS-LIHVIWEEVGPDAARKFLGHTQW 659
            + G  + GDT V IE GEL+ G LCKKT+G+S G  +IH    E GP+ A+KF    Q 
Sbjct: 527 KEVGDNSPGDTKVLIEHGELVMGILCKKTVGSSAGGGIIHTAVMEHGPETAKKFFNAAQR 586

Query: 660 LVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMM 719
           +VNYWLL   FSIGIGDTIADA++M  IN+TI +AK  V  +I  AQ   LE +PG T+ 
Sbjct: 587 VVNYWLLHRGFSIGIGDTIADARSMTDINNTIQQAKTQVSEIIAMAQQGRLEAQPGMTIR 646

Query: 720 ESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVE 779
           +SFE KVN  LN ARD+AG +AQ SL   NN+K MV AGSKGS+INISQMTACVGQQNVE
Sbjct: 647 QSFEAKVNHELNNARDKAGKAAQDSLPSFNNVKQMVVAGSKGSYINISQMTACVGQQNVE 706

Query: 780 GKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 839
           G+RIP+GF  RTLPHF KDD+ PE+RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT
Sbjct: 707 GRRIPYGFQYRTLPHFVKDDHSPEARGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT 766

Query: 840 SETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
           +ETGYIQRRLVKA+ED+MVKYDGTVRN+ GDV+QF YGEDGM
Sbjct: 767 AETGYIQRRLVKALEDVMVKYDGTVRNAQGDVVQFCYGEDGM 808


>gi|157741534|gb|ABV69472.1| RNA polymerase II largest subunit, partial [Polyblastia cupularis]
          Length = 999

 Score =  967 bits (2501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1024 (49%), Positives = 685/1024 (66%), Gaps = 51/1024 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A E +   + A+  R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVESE-DLRYAVSSRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGG------CGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D ++P  K KGG      CG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQA----DSP-EDEDDPNAKEKGGKIRHGGCGNAQPVIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +   + L V + ++DE  + LG+N  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEETVPE----KSQIWPAQALQVFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGSRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVTP+NI RLK LV  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTPFNISRLKYLVTRGPDNHPG---ARYIIRENNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +    L++G+KVERH+ DGD++LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  AKGIALKVGWKVERHIMDGDYILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +    
Sbjct: 460  LSREAVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPPALNLVRIDGKASQPPI 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VN
Sbjct: 520  ERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMGFFNRAQTVVN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDVGTVEKIKHEVDKKKAEVERITQSAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M    F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDCTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDHAFE 819

Query: 903  KAFRFEMDEENWNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQLAT--EIA 956
            K FR ++ E    P  ++ Q+ ++    I    +++ +FD E ++L  DR  L +  + A
Sbjct: 820  KLFRVDLME----PKKLVWQDRLEQASEIHGDVDVQKLFDEEYEQLADDRKFLRSIKKAA 875

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            TS D    LP+N+ R++  A+ TFK+     SD+HP  V+  V +L +RL +V GED +S
Sbjct: 876  TSSDEMMALPMNVVRILNQARTTFKIQSGALSDLHPSYVIPKVKQLLDRLVIVRGEDRIS 935

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
            +EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G +E+RF++++  PGEM+G +
Sbjct: 936  LEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAVETRFIKAIANPGEMVGVL 995

Query: 1077 AAQS 1080
            AAQS
Sbjct: 996  AAQS 999


>gi|157741514|gb|ABV69462.1| RNA polymerase II largest subunit, partial [Verrucaria chiloensis]
          Length = 999

 Score =  967 bits (2501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1019 (50%), Positives = 673/1019 (66%), Gaps = 41/1019 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D    + A  +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEDLRYARSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK-GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
             +  C+     D      +E   K + GGCG  QP +   G+++ A+YK  RK +D++E 
Sbjct: 60   KQNVCQADPPDDEDDPIAKEKTGKVRHGGCGNAQPAIRKSGLELWAQYKP-RKSDDEEEA 118

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV----- 256
            +PE    K  +   + L V + ++DE    LGLN  +ARP+WMILQ LP+PPPPV     
Sbjct: 119  VPE----KSQIWPAQALQVFQHLTDETLATLGLNLDFARPEWMILQSLPVPPPPVRPSIS 174

Query: 257  --------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
                    R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN++
Sbjct: 175  VDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDNDI 234

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
                +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP 
Sbjct: 235  ANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPR 294

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIA  LTYPETVT +NI RLK+ V  GP   PG   A+YIIR+  +R+DLRY K +S   
Sbjct: 295  SIARTLTYPETVTRFNISRLKQFVTNGPEMHPG---ARYIIREHNERIDLRYHKDTSQIA 351

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            L++G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNADFDGD
Sbjct: 352  LKVGWKVERHIVDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGD 404

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++ 
Sbjct: 405  EMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREE 464

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
             MNI++W  D+DG +P P I KPRP WTGKQ+ ++++P  +NL R     A    G   A
Sbjct: 465  VMNIMLWVPDWDGVIPLPAIFKPRPRWTGKQMVSMVLPSALNLVRIDG-KASQPPGERFA 523

Query: 609  --GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 666
              GD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q ++NYWLL
Sbjct: 524  PVGDSGLFVADGQLMFGMFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVINYWLL 583

Query: 667  QNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKV 726
             N FSIGIGDT+ D  T+E I + + K K  V+ + + A  + LE  PG  + E+FE+KV
Sbjct: 584  HNGFSIGIGDTVPDVGTVEKIKNEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKV 643

Query: 727  NQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 786
            +  LN ARDEAGS+ + SL +SNN   M  AG KGS INISQMTA VGQQ+VEGKRIPFG
Sbjct: 644  SAALNGARDEAGSATENSLKDSNNAIQMARAGPKGSTINISQMTAIVGQQSVEGKRIPFG 703

Query: 787  FVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 846
            F  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQ
Sbjct: 704  FKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 763

Query: 847  RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFR 906
            RRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+K FR
Sbjct: 764  RRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIISMSNDAFEKQFR 823

Query: 907  FEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR--YQLATEIATSGDS 961
             ++ E     W+      E   ++    +++ +FD E ++L  DR   +   + ATS D 
Sbjct: 824  VDLMEPKKLVWHDRL---EQAPEIHGDIDVQKLFDEEYEQLVEDRKFLRFINKAATSSDE 880

Query: 962  SWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQK 1021
              PLP+N+ R++  AQ TFK+ P   SD+HP  V+  V +L ERL +V GED +S EAQ 
Sbjct: 881  MMPLPMNVVRILNQAQTTFKIQPGAASDLHPSYVIPKVKQLLERLVIVRGEDKISREAQD 940

Query: 1022 NATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            NATL     LRS  A KR++ E+ L R AF+ V+G IE+R +++  +PGEM+G +AAQS
Sbjct: 941  NATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRSIKATASPGEMVGVLAAQS 999


>gi|157741556|gb|ABV69483.1| RNA polymerase II largest subunit, partial [Thelidium papulare]
          Length = 999

 Score =  967 bits (2499), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1024 (49%), Positives = 683/1024 (66%), Gaps = 51/1024 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D    + A+ +R+ K R   I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEDLRYAVSVRDRKKRFDLIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGG------CGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D ++P  K KGG      CG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQHVCQA----DSP-EDEDDPNAKEKGGKLRHGGCGNAQPVIRKAGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +   + L V + ++DE  + LG+N  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEETVPE----KSQIWPAQALQVFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVTP+NI +LK L+  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTPFNISKLKNLIIRGPEHHPG---ARYIIRENNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
                 L++G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  LKGIALKVGWKVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     A    
Sbjct: 460  LSREAVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPPALNLVRIDG-KASQPP 518

Query: 604  G--ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            G     AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +V
Sbjct: 519  GERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVV 578

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+
Sbjct: 579  NYWLLHNGFSIGIGDTVPDFGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMNVRET 638

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS I+ISQMTA VGQQ+VEGK
Sbjct: 639  FESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTISISQMTAIVGQQSVEGK 698

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 699  RIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 758

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M    F
Sbjct: 759  TGYIQRRLVKALEEVTVKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDHAF 818

Query: 902  DKAFRFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQLAT--EIA 956
            +K FR ++ E       + Q+ ++    I    +++ +FD E ++L  DR  L +  + A
Sbjct: 819  EKLFRVDLMEPK---KLVWQDRLEQASEIHGDVDVQKLFDEEYEQLTEDRNFLRSIKKAA 875

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            TSGD   PLP+N+ R++  A+ TFK+     SD+HP  V+  + +L +RL +V GED +S
Sbjct: 876  TSGDEMMPLPMNVVRILNQARTTFKIQSGALSDLHPSYVIPKIKQLLDRLIIVRGEDRIS 935

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
            +EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF++++ +PGEM+G +
Sbjct: 936  LEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKAIASPGEMVGVL 995

Query: 1077 AAQS 1080
            AAQS
Sbjct: 996  AAQS 999


>gi|157741580|gb|ABV69495.1| RNA polymerase II largest subunit, partial [Verrucaria hochstetteri]
          Length = 999

 Score =  967 bits (2499), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1026 (49%), Positives = 687/1026 (66%), Gaps = 55/1026 (5%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILA-DEDDHKFKQALKIRNPKNRLKKILDAC 141
            ++LA P++H GF+  V  ++ +VC NC KI A D +D ++  A+ +R+ K R   I    
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKALDSEDLRY--AVSVRDRKKRFDLIWRLS 58

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGG------CGAQQPKLTIEGMKMIAEYKAQRKK 195
            + +  C+  D +    +D ++P  K KGG      CG  QP +   G+++ A+YK  RK 
Sbjct: 59   QKQNVCQA-DSL----EDEDDPNAKEKGGKIRHGGCGNAQPAIRKAGLELWAQYKP-RKG 112

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
            +D++E +PE    K  +   + L + + ++DE    LG+N  +ARP+WMILQ LP+PPPP
Sbjct: 113  DDEEETVPE----KSQIWPAQALQIFQHLTDETLDSLGMNLDFARPEWMILQSLPVPPPP 168

Query: 256  V-------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT 302
            V             R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+AT
Sbjct: 169  VRPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVAT 228

Query: 303  YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
            Y DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D
Sbjct: 229  YMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLD 288

Query: 363  QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK 422
            ++GVP SIA  LTYPE+VTP+NI +LK L+  GP   PG   A+YIIR++ +R+DLRY K
Sbjct: 289  EVGVPRSIARTLTYPESVTPFNISKLKNLIIRGPENHPG---ARYIIRENNERIDLRYHK 345

Query: 423  KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 482
                  L++G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYN
Sbjct: 346  DLKGIALKVGWKVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYN 398

Query: 483  ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 542
            ADFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD 
Sbjct: 399  ADFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDV 458

Query: 543  FIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADND 602
            F+ ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     A   
Sbjct: 459  FLSREAVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPPALNLVRIDG-KASQP 517

Query: 603  KG--ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
             G     AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +
Sbjct: 518  AGERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTV 577

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            VNYWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E
Sbjct: 578  VNYWLLHNGFSIGIGDTVPDFGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMNVRE 637

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FE+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEG
Sbjct: 638  TFESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEG 697

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+
Sbjct: 698  KRIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTA 757

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M    
Sbjct: 758  ETGYIQRRLVKALEEVTVKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDQA 817

Query: 901  FDKAFRFEMDEENWNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQLAT--E 954
            F+K FR ++ E    P  ++ Q+ ++    I    +++ +FD E ++L  DR  L +  +
Sbjct: 818  FEKLFRVDLME----PKKLVWQDRLEQASEIHGDVDVQKLFDEEYEQLTEDRNFLRSIKK 873

Query: 955  IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDP 1014
             ATSGD   PLP+N+ R++  A+ TFK+     SD+HP  V+  + +L +RL +V GED 
Sbjct: 874  AATSGDEMMPLPMNVVRILNQARTTFKIQSGALSDLHPSYVIPKIKQLLDRLVIVRGEDR 933

Query: 1015 LSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIG 1074
            +S+EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G +E+RF++++ +PGEM+G
Sbjct: 934  ISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAVETRFIKAIASPGEMVG 993

Query: 1075 CVAAQS 1080
             +AAQS
Sbjct: 994  VLAAQS 999


>gi|226876247|gb|ACO89444.1| RNA polymerase II largest subunit, partial [Arachnomyces glareosus]
          Length = 993

 Score =  967 bits (2499), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1011 (50%), Positives = 679/1011 (67%), Gaps = 42/1011 (4%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEG--GD 151
            F+  +  ++ +VC NC KI A+  D K+ +AL+ R+PK R   I    K+   CE     
Sbjct: 1    FLTKIKKLLETVCHNCGKIKANTTDQKYAEALRFRDPKRRFDAIWRLSKDVLICEADPSP 60

Query: 152  EIDVP-GQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKND-DQEQLPEPVERK 209
            E D P G+D  +P++ + GGCG  QP++  EG+ +I  +K  + ++  D    P+P E+K
Sbjct: 61   EDDAPFGKDAGKPVRHH-GGCGNAQPQIRKEGISLIGTWKPNKMRDMMDDGDTPQP-EKK 118

Query: 210  QTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------------- 256
            Q +T +  LG+ + +S ED +L+GL+  YARP+WMI+ VLP+PPPPV             
Sbjct: 119  Q-ITPQMALGIFRNLSIEDVRLMGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGSGQ 177

Query: 257  RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQ 316
            R  DDLT++LA I+R N+N+ R E+ G+P H++ EF  LLQ+H+ATY DN++ GQP+A Q
Sbjct: 178  RGEDDLTYKLAEIVRANQNVTRCEQEGSPEHVVREFESLLQYHVATYMDNDIAGQPQAMQ 237

Query: 317  RSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTY 376
            +S RP+K+I  RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA +LTY
Sbjct: 238  KSNRPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARSLTY 297

Query: 377  PETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVE 436
            PE VTPYNI +L ELV  GP+  PG   A+ +IR+ G+R+DLR+ K++ +  L+ G+KVE
Sbjct: 298  PELVTPYNIHKLHELVAXGPNEHPG---ARXVIRETGERIDLRHHKRAGEMVLQYGWKVE 354

Query: 437  RHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 496
            RH                       R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQ
Sbjct: 355  RHXX----XXXXXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQ 410

Query: 497  SFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW 556
            S E RAE+ EL +VP  IVSPQ N P+MGIVQDTL G  KI +RD F+ +D  MNIL+W 
Sbjct: 411  SQEARAELRELCLVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTRDEVMNILLWV 470

Query: 557  EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA-----GDT 611
             D+DG +P+P I+KPR  WTGKQ+ +L++P+ +NL R      D DK  L        D 
Sbjct: 471  PDWDGVIPEPAIIKPRARWTGKQLISLVLPQGLNLLRV-----DKDKASLVEKFSPLNDN 525

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
             V +  G+L+ G   KKT+G + G +IH I+ E G D A  F    Q +VNYWLL N FS
Sbjct: 526  GVLVHGGQLMYGMFSKKTVGATGGGIIHTIYNEYGHDVALSFFNGAQTVVNYWLLHNGFS 585

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDTI D  T+  I + +   K  V ++   A D +LE  PG  + E+FE+KV++ LN
Sbjct: 586  IGIGDTIPDPSTILKIEEAVRVKKEEVDSITASATDNTLEALPGMNVRETFESKVSRALN 645

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARDEAG+  +K L + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RT
Sbjct: 646  NARDEAGTETEKGLKDLNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRT 705

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQR+LVK
Sbjct: 706  LPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVK 765

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD 910
            A+E+IMVKYDGTVRNSLGDV+QFLYGEDG+D   IE+Q +D +K    +F + FR + MD
Sbjct: 766  ALEEIMVKYDGTVRNSLGDVVQFLYGEDGLDGAHIENQRVDIIKCSDEKFYERFRVDLMD 825

Query: 911  -EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNL 969
             E +  P  +  E   ++    E++   D E ++L+ DR  L + +A   +    LP+N+
Sbjct: 826  PERSLGPEVL--EQATEIAGDVEVQKYLDEEWEQLQKDRTFLRS-VANQDEEMMQLPINV 882

Query: 970  KRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNI 1029
            +R++ +A+ TF++     SD+HP EV+  V  L +RL VV G D +S EAQ NATL F  
Sbjct: 883  QRILESAKTTFRIRDGNISDLHPSEVIPQVQALLDRLVVVRGNDEISREAQDNATLLFKA 942

Query: 1030 LLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
             LRS  A +R++ E+ + + +F+ V+G IESRF ++   PGEM+G +AAQS
Sbjct: 943  QLRSRLAFRRLVTEYYMNKLSFQHVLGAIESRFCKAGANPGEMVGVLAAQS 993


>gi|397135824|gb|AFO11407.1| RNA polymerase I, partial [Cyniclomyces guttulatus]
          Length = 871

 Score =  966 bits (2498), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/876 (56%), Positives = 640/876 (73%), Gaps = 21/876 (2%)

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV----- 256
            + EP +R   L+ E +L + K IS ED   LG + ++ARP+WMIL VLP+PPPPV     
Sbjct: 7    IEEPEQR--VLSVEEILNIFKHISPEDSTRLGFDEEFARPEWMILTVLPVPPPPVRPSIS 64

Query: 257  -----RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 311
                 R  DDLT +LA I++ N +L   E NGAP H I E   LLQFH+ATY DN++ GQ
Sbjct: 65   FNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQ 124

Query: 312  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 371
            P+A Q+SGRP+ SI +RLK KEGRIRGNLMGKRVDFSARTVI+ DP + +DQ+GVP SIA
Sbjct: 125  PQALQKSGRPVXSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPKSIA 184

Query: 372  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL 431
              LTYPE VTPYNI+RL +LV  GP+  PG   AKY+IRD+G R+DLRY K++ D  L+ 
Sbjct: 185  RTLTYPEVVTPYNIDRLTKLVRNGPNEHPG---AKYVIRDNGDRIDLRYSKRAGDIQLQY 241

Query: 432  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 491
            G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLNLSVTSPYNADFDGDEMN
Sbjct: 242  GWKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVVPYSTFRLNLSVTSPYNADFDGDEMN 301

Query: 492  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 551
            +HVPQS ETRAE+ +L  VP  IVSPQSN P MGIVQDTL G R +T +DTFIE D  +N
Sbjct: 302  LHVPQSEETRAELSQLCAVPLQIVSPQSNXPCMGIVQDTLCGIRILTLKDTFIEYDHALN 361

Query: 552  ILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDT 611
            +L    D+DG VP P+ILKP+PLWTGKQ+ +  IPK I+L R           +L+  D 
Sbjct: 362  MLYQIPDWDGIVPPPSILKPKPLWTGKQLLSAAIPKGIHLQRFX-----EGTTLLSPKDN 416

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
             + I  G+++ G + KKT+G+S G LIHV+  E GP    +   + Q +VN+WLL N FS
Sbjct: 417  GMLIIDGQIIXGVVDKKTVGSSNGGLIHVVTREKGPTTCARLFINIQKIVNFWLLHNGFS 476

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            +GIGDTIA+ +T+  I +T ++AK  V+ + K+AQ   L  + G T+ ESFE+ V + LN
Sbjct: 477  VGIGDTIANGETIRQITETXAEAKKKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRYLN 536

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARD+AG  A+ +L+++N +K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI FG VDRT
Sbjct: 537  EARDKAGRLAEVNLNDTNFVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGXVDRT 596

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
             PHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLI TAVKT+ETGYIQRRLVK
Sbjct: 597  XPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIXTAVKTAETGYIQRRLVK 656

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            A+EDIMV YD T RNSLG++IQFLYGEDG+D+ +IE Q+LD++    + F+K ++ ++  
Sbjct: 657  ALEDIMVHYDSTTRNSLGNIIQFLYGEDGIDASYIEKQSLDTIGGSDAAFEKKYKVDLMS 716

Query: 912  ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
             N + +  L E   ++    +L+ + D E ++L ADR  L + +   G+S+WPLP+N++R
Sbjct: 717  PNXSLDPTLLESGSEIAGDLKLQAILDEEYKQLVADRVFLRS-VFVDGESNWPLPINIRR 775

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            +I NAQ+TF++D  +PSD+   ++VE V KLQ +L V+ G       AQ +A   F  L+
Sbjct: 776  IIQNAQQTFRIDHSKPSDLTXPDIVEGVKKLQTKLLVLRGPGKFVEXAQXDAITLFCCLV 835

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            RS  + +RVL+E++LT+EAFEWV+  IES+FL+S+V
Sbjct: 836  RSRLSVRRVLQEYKLTKEAFEWVLNNIESQFLRSVV 871


>gi|157741574|gb|ABV69492.1| RNA polymerase II largest subunit, partial [Parabagliettoa dufourii]
          Length = 999

 Score =  966 bits (2497), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1024 (49%), Positives = 679/1024 (66%), Gaps = 51/1024 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC K+ A  D  + + AL +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKVKAI-DSEELRYALSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+         +D ++PL K K      GGCG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQADG-----FEDDDDPLGKEKAGKIRHGGCGNAQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++  +PE    K  +   + L V + ++D+  + LGLN  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEVTVPE----KSQIWPAQALQVFQHLTDDTLETLGLNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP S+A  LTYPETVT +N+ +LK LV  GP   PG   A+YIIR+  +R+DLRY K 
Sbjct: 290  VGVPRSVARVLTYPETVTLFNMGKLKRLVTNGPENHPG---ARYIIREHNERIDLRYHKN 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
              D  L++G+K+ERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  PGDIVLKVGWKIERHIQDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     A    
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMISMVLPPALNLVRIDG-KASQPP 518

Query: 604  G--ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            G     AGD+ + +  G+L+ G   KK++GT +  ++H I+ E GP+ A  F    Q +V
Sbjct: 519  GERFGPAGDSGLFVSDGQLMFGLFNKKSVGTGSNGIVHTIFNEFGPETATSFFNGAQTVV 578

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+
Sbjct: 579  NYWLLHNGFSIGIGDTVPDVGTVEKIKLEVDKKKAEVERITQSAVAEDLEALPGMNVRET 638

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGK
Sbjct: 639  FESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGK 698

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 699  RIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 758

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F
Sbjct: 759  TGYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAF 818

Query: 902  DKAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIA 956
            +K FR ++ E     W       E   ++    +++ +FD E ++L  DR  L    + A
Sbjct: 819  EKQFRVDLMEPKKLVWQGRL---EQASEIHGDVDVQKLFDEEYEQLVEDRKFLRYIKKAA 875

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            TS D   PLP+N+ R++  A+ TFK+     SD+HP  V+  + +L +RL VV GED +S
Sbjct: 876  TSSDEMMPLPMNIVRILNQARTTFKIQTGAASDLHPSYVIPKIGQLLDRLIVVRGEDRIS 935

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
            +EAQ+NATL     LRS  A KR++ E+ L R AF+ VIG IE+RF+++  +PGEM+G +
Sbjct: 936  LEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVIGAIETRFIKAGASPGEMVGVL 995

Query: 1077 AAQS 1080
            AAQS
Sbjct: 996  AAQS 999


>gi|157741552|gb|ABV69481.1| RNA polymerase II largest subunit, partial [Thelidium decipiens]
          Length = 999

 Score =  965 bits (2495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1024 (49%), Positives = 680/1024 (66%), Gaps = 51/1024 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D    + A+ +R+ K R   +    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEDLRYAVSVRDRKKRFDLVWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGG------CGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D ++P  K+KGG      CG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQA----DSP-EDEDDPNAKDKGGKIRHGGCGNAQPAIRKSGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +   + L V + ++DE    LG+N  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEETVPE----KSQIWPAQALQVFQHLTDETLDTLGMNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVTP+NI +LK L+  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTPFNISKLKNLIIRGPENHPG---ARYIIRENNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
                 L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  LKGIALKTGWKVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     A    
Sbjct: 460  LSREAVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPPALNLVRIDG-KASQPP 518

Query: 604  GILTA--GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            G   A  GD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +V
Sbjct: 519  GERFAPVGDSGLFVADGQLMFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVV 578

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+
Sbjct: 579  NYWLLHNGFSIGIGDTVPDFGTVEKIKFEVDKKKAEVERITESAVAEDLEALPGMNVRET 638

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+V GK
Sbjct: 639  FESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVAGK 698

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 699  RIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 758

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M    F
Sbjct: 759  TGYIQRRLVKALEEVTVKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDHAF 818

Query: 902  DKAFRFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQLAT--EIA 956
            +K FR ++ E       + Q+ ++    I    +++ +FD E ++L  DR  L +  + A
Sbjct: 819  EKLFRVDLMEPK---KLVWQDRLEQASEIHGDVDVQKLFDEEYEQLMEDRNFLRSIKKAA 875

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            TSGD   PLP+N+ R++  A+ TFK+     SD+HP  V+  + +L ERL +V GED +S
Sbjct: 876  TSGDEMMPLPMNVVRILNQARTTFKIQSGALSDLHPSYVIPKIKQLLERLIIVRGEDRIS 935

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
            +EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF +++ +PGEM+G +
Sbjct: 936  LEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFTKAIASPGEMVGVL 995

Query: 1077 AAQS 1080
            AAQS
Sbjct: 996  AAQS 999


>gi|157741560|gb|ABV69485.1| RNA polymerase II largest subunit, partial [Hydropunctaria adriatica]
          Length = 988

 Score =  965 bits (2495), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1013 (50%), Positives = 679/1013 (67%), Gaps = 51/1013 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+  V  I+ +VC NC KI A  D  + + AL +R+ K R + +    + +  C+     
Sbjct: 1    FLGKVKKILETVCHNCGKIKAI-DSEELRYALSVRDRKKRFELVWRPSQKQNVCQA---- 55

Query: 154  DVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVE 207
            D P +D E+ L K K      GGCG  QP +   G+++ A+YK  RK ++++E +PE   
Sbjct: 56   DAP-EDDEDQLAKEKVGKAKHGGCGNAQPAIRKTGLELWAQYKP-RKGDEEEEAVPE--- 110

Query: 208  RKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV----------- 256
            R Q   A+  L V + ++D+    LGL+  +ARP+WMILQ LP+PPPPV           
Sbjct: 111  RSQIWPAQ-ALQVFQHLTDDTLDTLGLSLDFARPEWMILQSLPVPPPPVRPSISVDGSGQ 169

Query: 257  --RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRA 314
              R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN++    +A
Sbjct: 170  GQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDNDIANLDKA 229

Query: 315  TQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNL 374
              +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  L
Sbjct: 230  QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 289

Query: 375  TYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK 434
            TYPETVT +NI RLK+ V  GP   PG   A+YIIR+  +R+DLRY K +++  L+ G+K
Sbjct: 290  TYPETVTQFNISRLKQFVTNGPEMHPG---ARYIIREHNERIDLRYHKNTAEITLKTGWK 346

Query: 435  VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHV 494
            VERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HV
Sbjct: 347  VERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 399

Query: 495  PQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM 554
            PQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ +D  MNI++
Sbjct: 400  PQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRDEVMNIML 459

Query: 555  WWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKGILTAGDTLV 613
            W  D+DG +PQP I+KPRP WTGKQ+ ++++P  +NL R     +    +    AGD+ +
Sbjct: 460  WVPDWDGVIPQPAIVKPRPRWTGKQMISMVLPPALNLVRIDGKASQPPAERFAPAGDSGL 519

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
             +  G+L+ G   KK++GT +  +IH ++ E G +AA  F    Q LVNYWLL N FSIG
Sbjct: 520  FVADGKLMFGLFNKKSVGTGSNGIIHTVFNEFGHEAAMAFFNGAQTLVNYWLLHNGFSIG 579

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGDT+ D  T+E I   + + K  V+ + + A  + LE  PG  + E+FE+KV+  LN A
Sbjct: 580  IGDTVPDVGTVEKIKSEVDRKKTEVERITQSAVAEDLEALPGMNVRETFESKVSAALNGA 639

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLP
Sbjct: 640  RDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPFGFKYRTLP 699

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+
Sbjct: 700  HFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 759

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN 913
            E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+K +R ++ E  
Sbjct: 760  EEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSHDAFEKQYRVDLME-- 817

Query: 914  WNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIATSGDSSWPLPV 967
              P  ++ Q+ ++    I    +++ +FD E ++L  DR  L    + ATS D   PLP+
Sbjct: 818  --PKKLVWQDRLEQASEIHGDVDVQKLFDEEYEQLMEDRKFLRHIKQAATSSDEMMPLPM 875

Query: 968  NLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFF 1027
            N+ R++  A+ TFK+    PSD+HP  V+  V +L +RL VV GED +SVEAQ+NATL  
Sbjct: 876  NVVRILNQARTTFKIQAGAPSDLHPSYVIPKVKQLLDRLVVVRGEDRISVEAQENATLLI 935

Query: 1028 NILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
               LRS  A KR++ E+ L R AF+ V+G +E+RF+++  +PGEM+G +AAQS
Sbjct: 936  KAQLRSRLAFKRLVMEYSLNRLAFDHVVGAVETRFIKAAASPGEMVGVLAAQS 988


>gi|157741582|gb|ABV69496.1| RNA polymerase II largest subunit, partial [Verrucaria hochstetteri]
          Length = 999

 Score =  965 bits (2494), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1025 (49%), Positives = 687/1025 (67%), Gaps = 53/1025 (5%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILA-DEDDHKFKQALKIRNPKNRLKKILDAC 141
            ++LA P++H GF+  V  ++ +VC NC KI A D +D ++  A+ +R+ K R   I    
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKALDSEDLRY--AVSVRDRKKRFDLIWRLS 58

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGG------CGAQQPKLTIEGMKMIAEYKAQRKK 195
            + +  C+  D +    +D ++P  K KGG      CG  QP +   G+++ A+YK  RK 
Sbjct: 59   QKQNVCQA-DSL----EDEDDPNAKEKGGKIRHGGCGNAQPAIRKAGLELWAQYKP-RKG 112

Query: 196  NDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP 255
            +D++E +PE    K  +   + L + + ++DE    LG+N  +ARP+WMILQ LP+PPPP
Sbjct: 113  DDEEETVPE----KSQIWPAQALQIFQHLTDETLDSLGMNLDFARPEWMILQSLPVPPPP 168

Query: 256  V-------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT 302
            V             R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+AT
Sbjct: 169  VRPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVAT 228

Query: 303  YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
            Y DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D
Sbjct: 229  YMDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLD 288

Query: 363  QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK 422
            ++GVP SIA  LTYPE+VTP+NI +LK L+  GP   PG   A+YIIR++ +R+DLRY K
Sbjct: 289  EVGVPRSIARTLTYPESVTPFNISKLKNLIIRGPENHPG---ARYIIRENNERIDLRYHK 345

Query: 423  KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 482
                  L++G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYN
Sbjct: 346  DLKGIALKVGWKVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYN 398

Query: 483  ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 542
            ADFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD 
Sbjct: 399  ADFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDV 458

Query: 543  FIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD-N 601
            F+ ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +   
Sbjct: 459  FLSREAVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPPALNLVRIDGKASQPA 518

Query: 602  DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
             +    AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +V
Sbjct: 519  AERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVV 578

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+
Sbjct: 579  NYWLLHNGFSIGIGDTVPDFGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMNVRET 638

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV+  LN ARDEAG++ + SL + +N   M  AGSKGS INISQMTA VGQQ+VEGK
Sbjct: 639  FESKVSAALNGARDEAGTATENSLKDISNAIQMARAGSKGSTINISQMTAIVGQQSVEGK 698

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 699  RIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 758

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M    F
Sbjct: 759  TGYIQRRLVKALEEVTVKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDQAF 818

Query: 902  DKAFRFEMDEENWNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQLAT--EI 955
            +K FR ++ E    P  ++ Q+ ++    I    +++ +FD E ++L  DR  L +  + 
Sbjct: 819  EKLFRVDLME----PKKLVWQDRLEQASEIHGDVDVQKLFDEEYEQLTEDRNFLRSIKKA 874

Query: 956  ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPL 1015
            ATSGD   PLP+N+ R++  A+ TFK+     SD+HP  V+  + +L +RL +V GED +
Sbjct: 875  ATSGDEMMPLPMNVVRILNQARTTFKIQSGALSDLHPSYVIPKIKQLLDRLVIVRGEDRI 934

Query: 1016 SVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGC 1075
            S+EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G +E+RF++++ +PGEM+G 
Sbjct: 935  SLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAVETRFIKAIASPGEMVGV 994

Query: 1076 VAAQS 1080
            +AAQS
Sbjct: 995  LAAQS 999


>gi|157741536|gb|ABV69473.1| RNA polymerase II largest subunit, partial [Polyblastia viridescens]
          Length = 999

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1025 (49%), Positives = 683/1025 (66%), Gaps = 53/1025 (5%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D    + A+ +R+ K R   I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEDLRYAVSVRDGKKRFDLIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGG------CGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D ++P  K KGG      CG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNICQA----DSP-EDEDDPNAKEKGGKIRHGGCGNAQPAIRKAGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +   + L V + ++DE  + LG+N  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEETVPE----KSQIWPAQALQVFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVTP+NI +LK L+  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTPFNISKLKNLIIRGPENHPG---ARYIIRENNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
                 L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  LKGITLKTGWKVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     A    
Sbjct: 460  LSREAVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPPALNLVRIDG-KASQPP 518

Query: 604  G--ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            G     AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +V
Sbjct: 519  GERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVV 578

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NY LL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+
Sbjct: 579  NYRLLHNGFSIGIGDTVPDFGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMNVRET 638

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGK
Sbjct: 639  FESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGK 698

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 699  RIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 758

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M    F
Sbjct: 759  TGYIQRRLVKALEEVTVKYDSTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDHAF 818

Query: 902  DKAFRFEMDEENWNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQLAT--EI 955
            +K FR ++ E    P  ++ Q+ ++    I    +++ +FD E ++L  DR  L +  + 
Sbjct: 819  EKLFRVDLME----PKKLVWQDRLEQASEIHGDVDVQKLFDEEYEQLMEDRNFLRSIKKA 874

Query: 956  ATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPL 1015
            ATSGD   PLP+N+ R++  A+ TFK+     SD+HP  V+  + +L +RL +V GED +
Sbjct: 875  ATSGDEMMPLPMNVVRILNQARTTFKIQSGALSDLHPSYVIPKIKQLLDRLIIVRGEDRI 934

Query: 1016 SVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGC 1075
            S+EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF++++ +PGEM+G 
Sbjct: 935  SLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKAIASPGEMVGV 994

Query: 1076 VAAQS 1080
            +AAQS
Sbjct: 995  LAAQS 999


>gi|157741618|gb|ABV69514.1| RNA polymerase II largest subunit, partial [Verrucula biatorinaria]
          Length = 999

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1023 (49%), Positives = 672/1023 (65%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D  + + AL +R+ K R + I     
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKA-LDSEELRYALSVRDRKKRFELIWRLSS 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+       P  D EEP  K K      GGCG  QP +   G+++ A+YKA RK +
Sbjct: 60   KQNVCQAD-----PPIDEEEPNLKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKA-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            +++E +PE    K  +   + L + + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  EEEETVPE----KSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPEHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK  V  GP   PG   A+Y+IR+ G+R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPG---ARYVIRETGERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L+ G+KVERHL DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKTGWKVERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDIF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I+KPRP WTGKQV ++++P  +NL R          
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIVKPRPRWTGKQVISMVLPPALNLVRIDGKELQPPG 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VN
Sbjct: 520  ERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + + K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDVGTVEKIKREVDRKKAEVERITQMAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKG+ INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGTTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IE Q +D + M  + F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIEKQRVDVIAMSDAAFE 819

Query: 903  KAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E     W       E   ++    +++ +FD E ++L  DR  L      A 
Sbjct: 820  KQFRVDLMESKKLVWQGRL---EQASEIHGDVDVQKLFDEEYERLVEDRKFLRYTNSAAN 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            + D    LP+N+ R++  A+ TF +     SD+HP  V+  V +L +RL +V G+D +S 
Sbjct: 877  AADEMMYLPMNVVRILNQARTTFNIQSGSTSDLHPSYVIPKVKQLLDRLIIVRGDDRISQ 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ+NATL     LRS  A KR+  E+ L R AF+ VIG IE+RF+++  +PGEM+G +A
Sbjct: 937  EAQENATLLIKAQLRSRLAFKRLALEYSLNRLAFDHVIGAIETRFIKATASPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|157741576|gb|ABV69493.1| RNA polymerase II largest subunit, partial [Verrucaria fuscula]
          Length = 999

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/1024 (50%), Positives = 681/1024 (66%), Gaps = 51/1024 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D  + + AL +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEELRYALSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQ------QPKLTIEGMKMIAEYKAQRKKN 196
             +  C+       P +D E+P+ K KGG          QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQAD-----PPEDEEDPIAKEKGGRIGHGGCGNAQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            +++E +PE    K  +   + L V + ++DE  + LGLN  +ARP+WMILQ LP+PPPPV
Sbjct: 114  EEEETIPE----KSQIWPAQALQVFQHLTDETLETLGLNHDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK+LV  GP   PG   A+YIIR+  +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKQLVTNGPEMHPG---ARYIIREHNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L++G+KVERH+ DGD  LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKVGWKVERHIMDGDVTLFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDEF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            + ++  MNI++W  D+DG +PQP I+KPRP WTGKQ+ ++++P  +NL R     A    
Sbjct: 460  LSREQVMNIMLWVPDWDGVIPQPAIVKPRPRWTGKQMVSMVLPPALNLVRIDG-KASQPP 518

Query: 604  G--ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            G     AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +V
Sbjct: 519  GERFAPAGDSGLFVADGQLMFGMFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVV 578

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FSIGIGDT+ D  T++ I D + K K  V+ + + A  + LE  PG  +  +
Sbjct: 579  NYWLLHNGFSIGIGDTVPDVGTVQKIKDEVDKKKAEVERITQSAVAEDLEALPGMNVRGT 638

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGK
Sbjct: 639  FESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGK 698

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 699  RIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 758

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F
Sbjct: 759  TGYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDDAF 818

Query: 902  DKAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIA 956
            +K FR ++ E     W       E   ++    +++ +FD E ++L  DR  L    + A
Sbjct: 819  EKQFRVDLMEPKKPVWQDRL---EQASEIHGDVDVQKLFDEEYEQLVEDRRFLRYIKKAA 875

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            TS D   PLP+N+ R++  A+ TFK+    PSD+HP  V+  V +L +RL +V GED +S
Sbjct: 876  TSSDEMMPLPMNVVRILNQARTTFKIQSGAPSDLHPSYVIPKVKQLLDRLIIVRGEDRIS 935

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
            +EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF +++ +PGEM+G +
Sbjct: 936  LEAQENATLLIKAQLRSRLAFKRLVMEYCLNRLAFDHVVGAIETRFTKAIASPGEMVGVL 995

Query: 1077 AAQS 1080
            AAQS
Sbjct: 996  AAQS 999


>gi|397135912|gb|AFO11451.1| RNA polymerase I, partial [Yamadazyma triangularis]
          Length = 859

 Score =  964 bits (2492), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/884 (56%), Positives = 632/884 (71%), Gaps = 36/884 (4%)

Query: 194  KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
            K  +D EQ PE    ++ LT   +L V + IS E C  LG N  YARP+WM++ V P+PP
Sbjct: 2    KXYEDSEQ-PE----RRLLTPSEILSVFRXISPEXCHRLGFNEDYARPEWMLVTVXPVPP 56

Query: 254  P----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
            P            R  DDLT +LA +I+ N  ++R E +G+P H+ISEF  LLQFH+ATY
Sbjct: 57   PPVRPSIAFNDTARGEDDLTFKLADVIKANIXVQRLEMDGSPQHVISEFEALLQFHVATY 116

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVI+ DP +++DQ
Sbjct: 117  MDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISGDPNLDLDQ 176

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  L+YPE VTP+NI RL E V+ GP+  PG   AKY+IR +G RLDLRY K+
Sbjct: 177  VGVPISIARTLSYPEIVTPFNIHRLTEYVKNGPNEXPG---AKYVIRXNGDRLDLRYNKR 233

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            + D  L+ G+KVERHL D D VLFNRQPSLHKMS+M H++K+MPYSTFRLNLSVTSPYNA
Sbjct: 234  AGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMAHKVKVMPYSTFRLNLSVTSPYNA 293

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN HVPQS ETRAE+ ++  VP  IVSPQSN+PVMGIVQDTL G RK+T RD F
Sbjct: 294  DFDGDEMNXHVPQSPETRAELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDNF 353

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            IE D  MN+L W  ++DG +P P I+KP+PLW+GKQ+ ++ IPK I+L       + ND 
Sbjct: 354  IEYDQVMNMLYWIPNWDGVIPPPAIVKPKPLWSGKQLLSMAIPKGIHLQXDVNXMSPNDG 413

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
            G+         I  GE++ G + KKT+G++ G L H +  E GP    +     Q +VN+
Sbjct: 414  GM--------XIVDGEIIFGVVDKKTVGSTGGGLXHTVMREKGPQVCAQLFSSLQKVVNF 465

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            WLL N FSIGIGDTIAD+++M  +  TI  AK  V+ +I  AQ   L+PEPG T+ ESFE
Sbjct: 466  WLLHNGFSIGIGDTIADSRSMNQVTSTIEDAKAKVQEIILNAQQNKLDPEPGMTLRESFE 525

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
            + V++VLN ARD AG SA+ +L + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRI
Sbjct: 526  HNVSRVLNQARDTAGRSAEMNLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRI 585

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
            PFGF DRTLPHFTKDDY PES+GFVENSYLRGLTPQEFFF AM GREGLIDTAVKT+ETG
Sbjct: 586  PFGFADRTLPHFTKDDYSPESKGFVENSYLRGLTPQEFFFXAMAGREGLIDTAVKTAETG 645

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRRLVKA+EDIMV YDGT RNSLGD IQ +YGEDG+D   +E Q +D++    + F+K
Sbjct: 646  YIQRRLVKALEDIMVXYDGTTRNSLGDXIQXIYGEDGLDGTQVEXQPIDTIPGSDAAFEK 705

Query: 904  AFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
             +R ++ + ++     L E   ++K   +L+ V D E  +L+ DR +    + ++GD  W
Sbjct: 706  RYRVDVLDGSFE---XLLESGXEIKGDVKLQRVLDEEFXQLQEDR-KFXRNVXSNGDFXW 761

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNA 1023
            PLPV L+R+I NAQ+ F  D  R SD+    +V +V +L  +L +V   DP   EAQ+NA
Sbjct: 762  PLPVXLRRIIQNAQQIFHSD--RASDLRLDXIVLSVXELCGKL-IVSRSDP---EAQENA 815

Query: 1024 TLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            TL F  LLRS  AS+RV++E  L + +FEWVIGE ES+F +S+V
Sbjct: 816  TLLFQCLLRSRLASRRVIEEFXLNKASFEWVIGEXESQFQKSIV 859


>gi|157741528|gb|ABV69469.1| RNA polymerase II largest subunit, partial [Placocarpus schaereri]
          Length = 999

 Score =  963 bits (2490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1023 (49%), Positives = 670/1023 (65%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D    + AL +R+ K R + I     
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKA-VDSEDLRYALSVRDRKKRFELIWRLSS 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+       P  D EEP  K K      GGCG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQAD-----PPNDEEEPNLKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            +++E +PE    K  +   + L + + +SDE  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  EEEETVPE----KSQIWPAQALQIFQHLSDETLETLGLSLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPEHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK  V  GP   PG   A+Y+IR+ G+R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPG---ARYVIRETGERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L+ G+KVERHL DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKTGWKVERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I+KPRP WTGKQV ++++P  +NL R          
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIVKPRPRWTGKQVISMVLPPALNLVRIDGKEPQPPG 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G D A  F    Q +VN
Sbjct: 520  ERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHDTAMAFFNGAQTVVN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + + K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDVGTVEKIKLEVDRKKAEVERITQMAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQ RLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M  + F+
Sbjct: 760  GYIQHRLVKALEEVTVKYDSTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDAAFE 819

Query: 903  KAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E     W       E   ++    +++ +FD E ++L  DR  L      A 
Sbjct: 820  KQFRVDLMEPKKLVWQGRL---EQASEIHGDVDVQKLFDDEYERLVEDRKFLRYIKSAAN 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            + D   PLP+N+ R++  A+ TF +     SD+HP  V+  V +L +RL +V G+D +S 
Sbjct: 877  AADEMMPLPMNVVRILNQARTTFNIQSGSTSDLHPSYVIPKVKQLLDRLIIVRGDDRISQ 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ+NATL     LRS  A KR+  E+ L R AF+ VIG IE+RF+++  +PGEM+G +A
Sbjct: 937  EAQENATLLIKAQLRSRLAFKRLALEYSLNRLAFDHVIGAIETRFIKATASPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|157741516|gb|ABV69463.1| RNA polymerase II largest subunit, partial [Placidium lachneum]
          Length = 989

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1014 (50%), Positives = 670/1014 (66%), Gaps = 51/1014 (5%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D    + A  +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEDLRYARSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGG------CGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P  D ++P+ K KGG      CG  QP +   G+++ A+YK   +K+
Sbjct: 60   KQNVCQA----DSP-DDEDDPIAKEKGGKVRHGGCGNAQPAIRKSGLELWAQYKP--RKS 112

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            DD+E   E V  K  +   + L V + ++DE  + LGLN  +ARP+WMILQ LP+PPPPV
Sbjct: 113  DDEE---ETVSEKSQIWPAQALQVFQHLTDETLETLGLNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK+ V  GP   PG   A+YIIR+  +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEMHPG---ARYIIREHNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L++G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKVGWKVERHIVDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     A    
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMVSMVLPSALNLVRIDG-KASQPP 518

Query: 604  GILTA--GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            G   A  GD  + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q ++
Sbjct: 519  GERFAPVGDGGLFVADGQLMFGMFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVI 578

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FSIGIGDT+ D  T+E I + + K K  V+ + + A  + LE  PG  + E+
Sbjct: 579  NYWLLHNGFSIGIGDTVPDVGTVEKIKNEVDKKKAEVERITQSAVAEDLEALPGMNVRET 638

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV+  LN ARDEAGS+ + SL +SNN   M  AGSKGS INISQMTA VGQQ+VEGK
Sbjct: 639  FESKVSAALNGARDEAGSATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGK 698

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 699  RIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 758

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F
Sbjct: 759  TGYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAF 818

Query: 902  DKAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIA 956
            +K FR ++ E     W+      E   ++    +++ +FD E ++L  DR  L    + A
Sbjct: 819  EKQFRVDLMEPRKLVWHDRL---EQASEIHGDVDVQKLFDEEYEQLVEDRRFLRYINKAA 875

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            TS D   PLP+N+ R++  AQ TFK+     SD+HP  V+  V +L ERL +V G D +S
Sbjct: 876  TSSDEMMPLPMNVVRILNQAQTTFKIQSGAASDLHPSHVIPKVKQLLERLVIVRGNDKIS 935

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            +EAQ NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF++++ +PG
Sbjct: 936  LEAQDNATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKAIASPG 989


>gi|316997019|dbj|BAJ52637.1| RNA polymerase II largest subunit [Monosiga ovata]
          Length = 1289

 Score =  962 bits (2488), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/1159 (45%), Positives = 723/1159 (62%), Gaps = 124/1159 (10%)

Query: 491  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
            N+HVPQS  TRAE++E MMV K ++SPQ+NRPVMGIVQDTL   RK+TKRDTFIE+   M
Sbjct: 1    NLHVPQSQLTRAEIIENMMVHKNVLSPQANRPVMGIVQDTLCAARKLTKRDTFIERSQLM 60

Query: 551  NILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG------ 604
             +L++  +++G++P P ++KP+ LWTGKQ+F+LI+P  INL R  + H   +        
Sbjct: 61   CLLLFLPNWNGRLPPPAVVKPKELWTGKQLFSLILPPGINLTREHSAHQSKNDTPQPSDS 120

Query: 605  ---------ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLG 655
                      +T  DT V +E G+LLSG +CKK+LG S GSLIH+IW + GP+  R+F G
Sbjct: 121  PETVMWKDPAITTFDTKVLVENGQLLSGIICKKSLGASGGSLIHIIWLDYGPEITRQFFG 180

Query: 656  HTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPG 715
            + Q ++N WLL    SIG+ DTIAD  T   +   + +A   V   I +A++  LEP+PG
Sbjct: 181  NVQTVINNWLLLEGQSIGVKDTIADENTYRAVRSCLERATKEVDKTITEARNDLLEPKPG 240

Query: 716  RTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQ 775
             T++++FE  VN++LN AR+E GS A+KSLSE NN KAM  AGSKGS +NISQ+ ACVGQ
Sbjct: 241  NTLLQTFELTVNEILNKAREETGSDAEKSLSEFNNFKAMAIAGSKGSSLNISQVIACVGQ 300

Query: 776  QNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 835
            QNVEGKRIPFGF  RTLPHF KDDYGPESRGFV NSYL GL+PQEFFFHAMGGREGLIDT
Sbjct: 301  QNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVFNSYLAGLSPQEFFFHAMGGREGLIDT 360

Query: 836  AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLK 895
            AVKT+ TGYIQRRLVKAME + + YDG+VRNS GD++Q LYGED MD V +E Q +  + 
Sbjct: 361  AVKTATTGYIQRRLVKAMEGLTLHYDGSVRNSNGDLLQLLYGEDFMDGVSVEHQNVPVVT 420

Query: 896  MKKSEFDKAFRFEMDEENWNPNYMLQEYI--DDLK---TIKELRDVFDAEVQKLEADRYQ 950
                +F   +  +++ +       L E I  D L     ++ L + F+ ++Q++ ++  Q
Sbjct: 421  QSNRDFKNRYNLDVEADKELIAGRLDESISRDVLSNPTVMQRLVEEFE-DLQRVRSECRQ 479

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRR----PSDMHPMEVVEAVDKLQERL 1006
            L       G+    LPVNL RLIWNAQK FK D ++     SD+HP++V++ V  L ++L
Sbjct: 480  LFLR----GEDKAVLPVNLDRLIWNAQKLFKTDSKKSKGQKSDLHPVDVIDGVRDLIKKL 535

Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
             +VPG D LS  AQ N+TLFF+ +L+S  ++K+VLK+HRLT+ AF W++GE+E RF+ + 
Sbjct: 536  VIVPGNDQLSATAQHNSTLFFSSMLKSVLSAKKVLKDHRLTQSAFSWILGEVEQRFMLAR 595

Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
              PGEM+G +AA+ +GEP TQMTLNTFHYAGVS+KNVTLGVPRL+EIINV+K  KTPSL 
Sbjct: 596  AHPGEMVGALAAECLGEPLTQMTLNTFHYAGVSSKNVTLGVPRLQEIINVSKAPKTPSLV 655

Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM- 1185
            ++L     S K  AK V   LE  TLR VT ++ + ++PD   +++ ED +FV+ +    
Sbjct: 656  IYLLGEAVSDKNEAKKVLNELELCTLRQVTASSAIIFEPDHFNSVVVEDRDFVRDFIGTD 715

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            P      +   PW+LRI ++ ++  DK  S++ +  +I ++   ++   +ND+NA +L+L
Sbjct: 716  PQVREQLKTCPPWVLRIVMDSKLFWDKGFSLSDIQTRITEKV-PEVVVTYNDENASQLVL 774

Query: 1246 RIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVN------------------ 1287
            R+ I        E+  E ++D   L+ +E+  + ++ L G+                   
Sbjct: 775  RLSI---NKAGEEVAVEVSDDLSTLRALEA-FIMDIPLAGLKAITKVYMNFPDDKVQRDK 830

Query: 1288 -------------------------LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
                                     LL VMC+  VDA RT +N ++E   VLGIEA R+ 
Sbjct: 831  QRMTVSDDGSYKFTPEWLLETDGSALLDVMCNRHVDAYRTMTNDVVECFSVLGIEAGRQC 890

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            + +E++ V+   G+YVNYRHL++LC+ MT +G+LMAITRHG+NR   G +MRCSFEETVD
Sbjct: 891  VENEIKNVLDNSGAYVNYRHLSLLCNIMTSKGYLMAITRHGVNRQKVGALMRCSFEETVD 950

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI----ELQLPSYME 1438
            IL++A+  AE D+LRGV+ENIMLG L P GTG   L+LN+ ML+ A+    E+  P +  
Sbjct: 951  ILMEASAHAECDHLRGVSENIMLGNLVPAGTGFFDLFLNEGMLEYALPHNTEINDPVF-- 1008

Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGY 1498
                       P++ TP      +P Y F P    +PV +  FSP       SP  S   
Sbjct: 1009 ---------DKPIAPTPAQMS-STPDYTFGPG---TPVANMGFSPADTNAGMSPGWSAAA 1055

Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP--AYSP 1556
            SP   GY     GY   SPG             GY+P SP+   SS GY+  SP  AY+ 
Sbjct: 1056 SPG--GYD----GYGGRSPG-------------GYNPMSPS---SSFGYA-QSPYNAYAA 1092

Query: 1557 TSPSY-SPTSPSY-SPTSP 1573
             SP Y S  SP + SPTSP
Sbjct: 1093 NSPQYSSAASPQHMSPTSP 1111


>gi|157741614|gb|ABV69512.1| RNA polymerase II largest subunit, partial [Verrucaria tristis]
          Length = 988

 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1013 (50%), Positives = 676/1013 (66%), Gaps = 51/1013 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+  V  I+ +VC NC KI A  D  + + AL +R+ K R + I    + +  C+  D  
Sbjct: 1    FLGKVKKILETVCHNCGKIKA-VDSEEMRYALSVRDRKKRFELIWRLSQKQNVCQA-DAH 58

Query: 154  DVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVE 207
            D    D E+PL K K      GGCG  QP +   G+++ A+YK  RK +D++E +PE   
Sbjct: 59   D----DEEDPLAKEKAGKTRHGGCGNAQPAIRKTGLELWAQYKP-RKGDDEEETVPE--- 110

Query: 208  RKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV----------- 256
             K  +   + L V + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV           
Sbjct: 111  -KSQIWPAQALQVFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPVRPSISVDGSGQ 169

Query: 257  --RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRA 314
              R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN++    +A
Sbjct: 170  GSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDNDIANLDKA 229

Query: 315  TQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNL 374
              +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  L
Sbjct: 230  QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 289

Query: 375  TYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK 434
            TYPETVTP+N++RLK LV  GP   PG   A+YIIR+ G+R+DLR+ K + +  L+ G+K
Sbjct: 290  TYPETVTPFNLDRLKRLVTNGPEHHPG---ARYIIREQGERIDLRFHKNTGEITLKTGWK 346

Query: 435  VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHV 494
            VERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HV
Sbjct: 347  VERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHV 399

Query: 495  PQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM 554
            PQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++  MNI++
Sbjct: 400  PQSEESRAELHQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIML 459

Query: 555  WWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKGILTAGDTLV 613
            W  D+DG +PQP I KPRP WTGKQV ++++P  +NL R     +    +    AGD+ +
Sbjct: 460  WVPDWDGVIPQPAIFKPRPRWTGKQVISMVLPPALNLVRIDGKPSQPPGERFAPAGDSGL 519

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
             +  G+L+ G   KK++GT +   IH I+ E G + A  F    Q +VNYWLL N FSIG
Sbjct: 520  XVSDGQLMFGLFNKKSVGTGSNGTIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSIG 579

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+FE+KV+  LN A
Sbjct: 580  IGDTVPDVGTVERIKFEVDKKKAEVEKITQSAVAEDLEALPGMNVRETFESKVSAALNGA 639

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLP
Sbjct: 640  RDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPFGFKYRTLP 699

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+
Sbjct: 700  HFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 759

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN 913
            E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M    F+K FR ++ E  
Sbjct: 760  EEVTVKYDSTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAFEKQFRVDLME-- 817

Query: 914  WNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIATSGDSSWPLPV 967
              P  ++ Q+ ++    I    +++ +FD E ++L  DR  L    + AT+ D   PLP+
Sbjct: 818  --PKKLVWQDRLEQASEIHGDVDVQKMFDEEYEQLVEDRRFLRHIKKAATTSDEMMPLPM 875

Query: 968  NLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFF 1027
            N+ R++  A+ TFK+    PSD+HP  V+  V  L +RL +V G+D +S+EAQ+NATL  
Sbjct: 876  NIVRILNQARTTFKIHSGSPSDLHPSYVIPKVKLLLDRLIIVRGDDRISLEAQENATLLI 935

Query: 1028 NILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
               LRS  A KR++ E+ L R AF+ V+G +E+RF+++  +PGEM+G +AAQS
Sbjct: 936  KAQLRSRLAFKRLVMEYSLNRLAFDHVVGAVETRFIKATASPGEMVGVLAAQS 988


>gi|157741584|gb|ABV69497.1| RNA polymerase II largest subunit, partial [Verrucaria hydrela]
          Length = 999

 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1018 (49%), Positives = 678/1018 (66%), Gaps = 39/1018 (3%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D  + + AL +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKA-VDSEELRFALTVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK-GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
             +  C+     D     G+E   + + GGCG  QP +   G+++ A+YK  RK +D++E 
Sbjct: 60   KQNICQADAADDENDALGKEKAGRIRHGGCGNAQPAIRKTGLELWAQYKP-RKGDDEEET 118

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV----- 256
            +PE    K  +   + L V + ++D+  + LGL+  +ARP+WMILQ LP+PPPPV     
Sbjct: 119  VPE----KSQIWPAQALQVFQHLTDDTLETLGLSLDFARPEWMILQSLPVPPPPVRPSIS 174

Query: 257  --------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
                    R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN++
Sbjct: 175  VDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDNDI 234

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
                +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP 
Sbjct: 235  ANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPR 294

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIA  LTYPETVT +N ERLK+ V  GP   PG   A+YI+R+ G+R+DLR+ K      
Sbjct: 295  SIARTLTYPETVTRFNKERLKKFVTNGPDNHPG---ARYIVREQGERIDLRFHKDPKSIT 351

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            L  G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNADFDGD
Sbjct: 352  LLTGWKVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGD 404

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++ 
Sbjct: 405  EMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREA 464

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKGILT 607
             MNI++W  D+DG +PQP I KPRP WTGKQV ++++P  +NL R     +    +    
Sbjct: 465  VMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQVISMVLPPALNLVRIDGKPSQPPGERFAP 524

Query: 608  AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 667
            AGD+ + +  G L+ G   KK++GT +  +IH I+ E G + A  F    Q +VNYWLL 
Sbjct: 525  AGDSGLFVADGLLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLH 584

Query: 668  NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVN 727
            N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+FE+KV+
Sbjct: 585  NGFSIGIGDTVPDVGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVS 644

Query: 728  QVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 787
              LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKRIPFGF
Sbjct: 645  AALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPFGF 704

Query: 788  VDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQR 847
              RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQR
Sbjct: 705  KYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQR 764

Query: 848  RLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF 907
            RLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+K FR 
Sbjct: 765  RLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDHAFEKQFRV 824

Query: 908  EMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIATSGDSS 962
            ++ E       + Q+ ++    I    +++ +FD E ++L  DR  L    + AT+ D  
Sbjct: 825  DLMEPK---KLVWQDRLEQASEIHGDVDVQKLFDEEYEQLVEDRRFLRHIKKAATTSDEM 881

Query: 963  WPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKN 1022
             PLP+N+ R++  A+ TFK+    PSD+HP  V+  V +L +RL +V GED +S+EAQ+N
Sbjct: 882  MPLPMNIVRILNQARTTFKIQSGCPSDLHPSYVIPKVKQLLDRLIIVRGEDRISLEAQEN 941

Query: 1023 ATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            ATL     LRS  A KR++ E+ L R AF+ ++G +E+RF++++ +PGEM+G +AAQS
Sbjct: 942  ATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHIVGAVETRFIKAMASPGEMVGVLAAQS 999


>gi|157741632|gb|ABV69521.1| RNA polymerase II largest subunit, partial [Verruculopsis poeltiana]
          Length = 988

 Score =  962 bits (2486), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1019 (50%), Positives = 680/1019 (66%), Gaps = 63/1019 (6%)

Query: 94   FMKTVLSIMRSVCFNCSKILA-DEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            F+  V  ++ +VC NC KI A D +D ++  AL +R+ K R + I    + +  C+    
Sbjct: 1    FLGKVKKLLETVCHNCGKIKAIDSEDLRY--ALSVRDRKKRFELIWRLSQKQNVCQA--- 55

Query: 153  IDVPGQDGEEPLKKNKGG------CGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPV 206
             D P +D ++P  K KGG      CG  QP++   G+++ A+YK  RK +D++E +PE  
Sbjct: 56   -DSP-EDEDDPTAKEKGGKVRHGGCGNAQPQIRKSGLELWAQYKP-RKGDDEEETVPE-- 110

Query: 207  ERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV---------- 256
              K  +   + L V + ++D+  + LGL+  +ARP+WMILQ LP+PPPPV          
Sbjct: 111  --KSQIWPAQALQVFQHLTDDTLEKLGLSLDFARPEWMILQSLPVPPPPVRPSISVDGSG 168

Query: 257  ---RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN++    +
Sbjct: 169  QGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDNDIANLDK 228

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  
Sbjct: 229  AQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 288

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVT +N+ERLK  V  GP   PG   A+YIIR++ +R+DLRY K +S+  L+ G+
Sbjct: 289  LTYPETVTRFNMERLKNFVANGPQMHPG---ARYIIRENNERIDLRYHKNTSEIALKKGW 345

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNADFDGDEMN+H
Sbjct: 346  KVERHIMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 398

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++  MNI+
Sbjct: 399  VPQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREAVMNIM 458

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG------ILT 607
            +W  D+DG +PQP ILKPRP WTGKQ+ ++++P  +NL R      D   G         
Sbjct: 459  LWVPDWDGVIPQPAILKPRPRWTGKQIISMVLPPALNLVRI-----DGKPGQPPGERFAP 513

Query: 608  AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 667
            AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q ++NYWLL 
Sbjct: 514  AGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVINYWLLH 573

Query: 668  NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVN 727
            N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+FE+KV+
Sbjct: 574  NGFSIGIGDTVPDVGTVEKIKFEVDKKKTEVERITQSAVAEELEALPGMNVRETFESKVS 633

Query: 728  QVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 787
              LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKRIPFGF
Sbjct: 634  AALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPFGF 693

Query: 788  VDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQR 847
              RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E GYIQR
Sbjct: 694  KYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAEAGYIQR 753

Query: 848  RLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF 907
            RLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+K FR 
Sbjct: 754  RLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDDAFEKQFRV 813

Query: 908  EMDEENWNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQLAT--EIATSGDS 961
            ++ E    P  ++ Q+ ++    I    +++ +FD E  +L  DR  L +  + ATS D 
Sbjct: 814  DLME----PKKLVWQDRLEQASEIHGDVDVQKLFDEEYDQLVEDRQFLRSIKKAATSADE 869

Query: 962  SWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQK 1021
              PLP+N+ R++  A+ TF +    PSD+HP  V+  V +L +RL +V GED +S+EAQ+
Sbjct: 870  MMPLPMNVVRILDQARTTFAIQSGAPSDLHPSYVIPKVKQLLDRLVIVRGEDRISLEAQE 929

Query: 1022 NATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF+++  +PGEM+G +AAQS
Sbjct: 930  NATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKAAASPGEMVGVLAAQS 988


>gi|157741554|gb|ABV69482.1| RNA polymerase II largest subunit, partial [Thelidium incavatum]
          Length = 999

 Score =  961 bits (2485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1021 (49%), Positives = 682/1021 (66%), Gaps = 45/1021 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILA-DEDDHKFKQALKIRNPKNRLKKILDAC 141
            ++LA P++H GF+  V  ++ +VC NC KI A D +D ++  A+ +R+ K R   I    
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKALDSEDLRY--AVSVRDRKKRFDLIWRLS 58

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNK-GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
            + +  C+     D    +G+E   K + GGCG  QP +   G+++ A+YK  RK +D++E
Sbjct: 59   QKQNMCQADSTEDEDDPNGKEKGGKIRHGGCGNAQPAIRKAGLELWAQYKP-RKGDDEEE 117

Query: 201  QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV---- 256
             +PE    K  +   + L V + ++DE  + LG+N  +ARP+WMILQ LP+PPPPV    
Sbjct: 118  TVPE----KSQIWPAQALQVFQHLTDETLETLGMNLDFARPEWMILQSLPVPPPPVRPSI 173

Query: 257  ---------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNE 307
                     R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN+
Sbjct: 174  SVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMDND 233

Query: 308  LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 367
            +    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP
Sbjct: 234  IANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVP 293

Query: 368  WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 427
             SIA  LTYPETVT +NI +LK L+  GP   PG   A+YIIR++ +R+DLRY K     
Sbjct: 294  RSIARTLTYPETVTRFNISKLKNLIIRGPENHPG---ARYIIRENNERIDLRYHKDLKGI 350

Query: 428  HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDG 487
             L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNADFDG
Sbjct: 351  ALKAGWKVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDG 403

Query: 488  DEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
            DEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++
Sbjct: 404  DEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLPRE 463

Query: 548  VFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILT 607
              MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     A    G   
Sbjct: 464  AVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPPALNLVRIDG-KASQPPGERF 522

Query: 608  A--GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
            A  GD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VNYWL
Sbjct: 523  APVGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWL 582

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+FE+K
Sbjct: 583  LHNGFSIGIGDTVPDFGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESK 642

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            V+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKRIPF
Sbjct: 643  VSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPF 702

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF  RTLPHF KDDY    +GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 703  GFKYRTLPHFAKDDYSAAPKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYI 762

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M    F+K F
Sbjct: 763  QRRLVKALEEVTVKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDHAFEKLF 822

Query: 906  RFEMDEENWNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIATSG 959
            R ++ E    P  ++ Q+ ++    I    +++ +FD E ++L  DR  L    + ATSG
Sbjct: 823  RVDLME----PKKLVWQDRLEQASEIHGDVDVQKLFDEEYEQLTEDRNFLRGIKKAATSG 878

Query: 960  DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEA 1019
            D   PLP+N+ R++  A+ TFK+     SD+HP  V+  + +L +RL +V GED +S+EA
Sbjct: 879  DEMMPLPMNVVRILNQARTTFKIQSGALSDLHPSYVIPKIKQLLDRLVIVRGEDRISLEA 938

Query: 1020 QKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQ 1079
            Q+NATL     LRS  A KR++ E+ L R AF+ V+G +E+RF++++ +PGEM+G +AAQ
Sbjct: 939  QENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAVETRFIKAIASPGEMVGVLAAQ 998

Query: 1080 S 1080
            S
Sbjct: 999  S 999


>gi|157741630|gb|ABV69520.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
          Length = 999

 Score =  961 bits (2485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1024 (49%), Positives = 672/1024 (65%), Gaps = 51/1024 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D  + + AL +R+ K R + I     
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKA-LDSEELRYALSVRDRKKRFELIWRLSS 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+       P  D EEP  K K      GGCG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQAD-----PPIDEEEPNLKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            +++E +PE    K  +   + L + + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  EEEETVPE----KSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPEHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITSDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK  V  GP   PG   A+Y+IR+ G+R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPG---ARYVIRETGERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L+ G+KVERHL DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKTGWKVERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD--N 601
            + ++  MNI++W  D+DG +PQP I+KPRP WTGKQV ++++P  +NL R          
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIVKPRPRWTGKQVISMVLPPALNLVRIDGKEPQPPG 519

Query: 602  DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            ++    AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +V
Sbjct: 520  ERSA-PAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVV 578

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FSIGIGDT+ D  T+E I   + + K  V+ + + A  + LE  PG  + E+
Sbjct: 579  NYWLLHNGFSIGIGDTVPDVGTVEKIKLEVDRKKAEVERITQMAVAEDLEALPGMNVRET 638

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGK
Sbjct: 639  FESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGK 698

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 699  RIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 758

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IE Q +D + M  + F
Sbjct: 759  TGYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIEKQRVDVIAMSDAAF 818

Query: 902  DKAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIA 956
            +K FR ++ E     W       E   ++    +++ +FD E ++L  DR  L      A
Sbjct: 819  EKQFRVDLMESKKLVWQGRL---EQASEIHGDVDVQKLFDEEYERLVEDRKFLRYTNSAA 875

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
             + D    LP+N+ R++  A+ TF +     SD+HP  V+  V +L +RL +V G+D +S
Sbjct: 876  NAADEMMYLPMNVVRILNQARTTFNIQSGSTSDLHPSYVIPKVKQLLDRLIIVRGDDRIS 935

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
             EAQ+NATL     LRS  A KR+  E+ L R AF+ VIG IE+RF+++  +PGEM+G +
Sbjct: 936  QEAQENATLLIKAQLRSRLAFKRLALEYSLNRLAFDHVIGAIETRFIKATASPGEMVGVL 995

Query: 1077 AAQS 1080
            AAQS
Sbjct: 996  AAQS 999


>gi|397135830|gb|AFO11410.1| RNA polymerase I, partial [Zygotorulaspora mrakii]
          Length = 871

 Score =  961 bits (2484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/878 (56%), Positives = 635/878 (72%), Gaps = 29/878 (3%)

Query: 204  EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------- 256
            EP +R   LT E +L + K IS ED   +G N +Y+RP+WMIL VLP+PPPPV       
Sbjct: 9    EPEQR--VLTMEEILNIFKHISPEDSTRMGFNEQYSRPEWMILTVLPVPPPPVRPSISFN 66

Query: 257  ---RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT +LA I++ N +L   E NGAP H I E   LLQFH+ATY DN++ GQ +
Sbjct: 67   ESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDNDIAGQXQ 126

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+KSI + LK KEG IRGNLMGKRVDFSARTVI+    +   Q+GVP SIA  
Sbjct: 127  ALQKSGRPVKSIRAXLKGKEGCIRGNLMGKRVDFSARTVISGXXNLXXXQVGVPKSIAKT 186

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPE VTPYNI+ L +LV  GP+  PG   AKY+IRD+G R+DLRY  ++ D  L   +
Sbjct: 187  LTYPEVVTPYNIDSLTQLVRNGPNEHPG---AKYVIRDNGDRIDLRYXXRAGDIXLXYXW 243

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERH+ D D  LFN QPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 244  KVERHIXDNDPXLFNXQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 303

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS ETRAE+ +L  VP  IVSPQSN+P MGIVQDTL G RK+T RD FIE D  +N+L
Sbjct: 304  VPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDNFIELDQVLNML 363

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLV 613
             W  D+DG +P P I+KP+PLWTGKQ+ ++ IPK I+L R      D    +L+  D  +
Sbjct: 364  YWVPDWDGVIPTPAIIKPKPLWTGKQILSIAIPKGIHLQR-----FDEGTTLLSPKDNGM 418

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
             I  G+++ G + KKT+G+S+G LIHV+  E GP    +  G+ Q +VNYW L N FS G
Sbjct: 419  LIIDGQIIFGVVEKKTVGSSSGGLIHVVTREKGPQVCARLFGNIQKVVNYWFLHNGFSTG 478

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGDTIAD +TM  I +TI+ AK  V+++ K+AQ   L  + G T+ ESFE+ V + LN A
Sbjct: 479  IGDTIADGQTMREITETIADAKKKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEA 538

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RD+AG  A+ +L + NN+K MV+AGSKGSFINI+QM+ACVGQQ+VEGKRI FGFVDRTLP
Sbjct: 539  RDKAGRLAEVNLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLP 598

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+
Sbjct: 599  HFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAL 658

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN 913
            EDIMV YD T RNSLG+VIQF+YGEDG+D+  IE Q++D++      F++ +R ++  ++
Sbjct: 659  EDIMVHYDSTTRNSLGNVIQFVYGEDGVDASHIEKQSIDTIGGSDLAFERKYRIDLLSDD 718

Query: 914  WNPNYML----QEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNL 969
            +  +  L     E + D+K    L+ + D E  +L +DR  L  +I   G+ +WPLPVN+
Sbjct: 719  YLLDPSLLEPGTEMVGDIK----LQALLDEEHTQLVSDRTFL-RKIFPDGEPNWPLPVNI 773

Query: 970  KRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNI 1029
            +R+I NAQ+TF++D  +PSD+   +++  V +LQ+RL V+ GE  +  +AQK+A   F  
Sbjct: 774  RRIIQNAQQTFRIDHTKPSDLSIRDIIGGVRELQDRLLVLRGESSIIKQAQKDAVKLFGC 833

Query: 1030 LLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            L+RS  A+KRV++E+RLT++AFEWV+  IE +FL+SLV
Sbjct: 834  LMRSRLATKRVIQEYRLTKQAFEWVLNNIEIQFLRSLV 871


>gi|157741620|gb|ABV69515.1| RNA polymerase II largest subunit, partial [Verrucula arnoldaria]
          Length = 999

 Score =  961 bits (2484), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1023 (49%), Positives = 671/1023 (65%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D  + + AL +R+ K R + I     
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKA-LDSEELRYALSVRDRKKRFELIWRLSS 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+       P  D EEP  K K      GGCG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQAD-----PPIDEEEPNLKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            +++E +PE    K  +   + L + + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  EEEETVPE----KSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPEHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK  V  GP   PG   A+Y+IR+ G+R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPG---ARYVIRETGERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L+ G+KVERHL DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKTGWKVERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNAPLMGIVQDTLCGIYKICRRDIF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I+KPRP WTGKQV ++++P  +NL R          
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIVKPRPRWTGKQVISMVLPPALNLVRIDGKEPQPPG 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VN
Sbjct: 520  ERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + + K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDVGTVEKIKREVDRKKAEVERITQMAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKG+ INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGTTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IE Q +D + M  + F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIEKQRVDVIAMSDAAFE 819

Query: 903  KAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E     W       E   ++    +++ +FD E ++L  DR  L      A 
Sbjct: 820  KQFRVDLMESKKLVWQGRL---EQASEIHGDVDVQKLFDEEYERLVEDRKFLRYTNSAAN 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            + D    LP+N+ R++  A+ TF +     SD+HP  V+  V +L +RL +V G+D +S 
Sbjct: 877  AADEMMYLPMNVVRILNQARTTFNIQSGSTSDLHPSYVIPKVKQLLDRLIIVRGDDRISQ 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ+NATL     LRS  A KR+  E+ L R AF+ VIG IE+RF+++  +PGEM+G +A
Sbjct: 937  EAQENATLLIKAQLRSRLAFKRLALEYSLNRLAFDHVIGAIETRFIKATASPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|167376643|ref|XP_001733237.1| DNA-directed RNA polymerase II subunit RPB1 [Entamoeba dispar SAW760]
 gi|165904563|gb|EDR29776.1| DNA-directed RNA polymerase II subunit RPB1, putative [Entamoeba
            dispar SAW760]
          Length = 1619

 Score =  959 bits (2480), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 603/1657 (36%), Positives = 902/1657 (54%), Gaps = 189/1657 (11%)

Query: 11   EVAKVRMVQFGILSPDEIRQMSVVQI-EHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
            E  +V+ ++F +LS ++IR+M V +I E       GKP  GGL+DPR+G  ++  +C+TC
Sbjct: 7    ETKRVKQIKFTLLSSEQIRKMGVCKITESTLVNSDGKPVLGGLADPRMGPFEKGEECQTC 66

Query: 70   TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRN 129
                 ECPGHFG++EL +P+++  +MK +L +++ VC  C +I    D+       +I+N
Sbjct: 67   RGTRTECPGHFGYIELTQPVYNAIYMKYILQVLKCVCPICKRIYCHGDE-------RIKN 119

Query: 130  PKN----RLKKILDAC-KNKTKC----EGGDEIDVPGQDGEEPLKKNKGG--CGAQQPKL 178
             K+    RLK+I +   KN   C    E   ++D   Q+ EE  +    G     + PKL
Sbjct: 120  IKSTGEERLKEIYEFIHKNYKACGVLSEKKKDLD-KHQNNEEEEQNPCNGPIVDYELPKL 178

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              E  K+    K   K N++ +  P              L + K ++DED + LG +P  
Sbjct: 179  KSEN-KLEIRRKNGIKTNEENDFKPRDA-----------LAIFKDMTDEDVRALGFDPID 226

Query: 239  ARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
              P +MI  ++P+PP  VRPS          DDLT     +I  NE L+  E N     +
Sbjct: 227  CHPKFMIFTLIPVPPLCVRPSIVSEGAKESKDDLTVLYENVITANERLK--EENQKCEGV 284

Query: 289  ISEFAQLLQFH-IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
               + +L++   I      +    P    R  +  KSI  RL +K+GR+R NLMGKRVDF
Sbjct: 285  SEYYNKLMELQTICAKISMKNVKLPETMLRK-KNFKSIEERLSSKQGRLRLNLMGKRVDF 343

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVI+PDP +++D++GVP  +A  LT+PE VT +N E+L++LV  G +  PG   A  
Sbjct: 344  SARTVISPDPNLSMDEVGVPTGVARILTFPEVVTQHNKEKLQKLVNAGMNDYPG---AFM 400

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            + R +GQ     Y    S+  +++G  V R++ +GD+V+FNRQPSLH+MS+MGH+++++P
Sbjct: 401  LERKNGQT----YRLNGSEKIIDIGDTVHRYIMNGDYVIFNRQPSLHRMSMMGHKVRVLP 456

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            +STFR+NL  T+PYNADFDGDEMN+HVPQ+ E RAEV  LM+ P  I++PQ N PVMGIV
Sbjct: 457  FSTFRMNLCDTTPYNADFDGDEMNLHVPQTLEARAEVATLMLTPTQIITPQHNGPVMGIV 516

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDT  G   ITKR+TFIE+ VF NIL W ++FDG VP P ILKP P WTGKQVF  I+P 
Sbjct: 517  QDTQCGSYLITKRETFIEQLVFYNILQWLDNFDGTVPIPAILKPVPKWTGKQVFTQILP- 575

Query: 588  QINLFRTAAWHADNDKGILTAG----DTLVRIEKGELLSGTLCKKT-LGTSTGSLIHVIW 642
             IN F+   W     K +L  G    D+ V I  G  L G+L  K+  G +   +I  I+
Sbjct: 576  TIN-FQRGNWSI---KELLKHGPAVNDSDVYILDGVHLVGSLRDKSEFGKNRSGIIQTIF 631

Query: 643  EEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
            ++ G +A + F   TQ  VN W+L   F++G+GD +      ++I   + K+K   +  +
Sbjct: 632  KDKGMEATKVFFNKTQATVNSWILTRGFTVGVGDIVVPQSVHDSIRANVEKSKKEAEKFL 691

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
                D  ++ + G TM E+ E+++  +L   + E  S   KSL + NNL AMV +GSKGS
Sbjct: 692  SHQHDDEIKVQAGNTMFENLESELGNLLEKLKKECDSITTKSLKKDNNLLAMVDSGSKGS 751

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
              NI QM A VG+Q +   RIPFGF  RTLPH+ K+DYG  SRGFVENSY+ GL+PQEFF
Sbjct: 752  TTNILQMVAFVGKQEINNLRIPFGFYKRTLPHYWKEDYGFVSRGFVENSYVMGLSPQEFF 811

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAM GR+G+IDTAVKTS+TGYIQR++VK MED+  KYD TVR S GD+++F+YG DG+D
Sbjct: 812  FHAMAGRQGIIDTAVKTSDTGYIQRKMVKCMEDVQCKYDRTVRRSSGDMVEFMYGGDGVD 871

Query: 883  SVWIESQTL--------DSLKMKKSEFD-----KAFRFEMDEENWNPNYMLQEYIDDLKT 929
            ++  E+Q          D+ +   +E+D     + +R+++++E  N   +L E I +   
Sbjct: 872  ALMCETQKYIYCNDQKPDNFEGSINEYDTLKMNELYRWDLNDEKLNE--LLDEDIYNKLF 929

Query: 930  IKELRDVFDAEVQKLEADRYQLATEIATSGD---SSWPLPVNLKRLIWNAQKTFKVDPRR 986
              E + +FD E Q++  +R +L      S D       + VN  R I N      +   +
Sbjct: 930  TDEYQTLFDNEFQRILDEREELYQPWRRSLDLKPCDIHIVVNFARQIDNVIAARYLPKSQ 989

Query: 987  PSDMHPMEVVEAVDKLQERLKVVPG--EDPLSVEAQKNATLFFNILLRSTFASKRVLKEH 1044
             S++ P  ++E  + L + L  +     D L  E  K+A   F  LL  T +SK+ L +H
Sbjct: 990  RSNLDPKYIIERENALIKELSSIGAVKNDKLDEERFKDALGSFGKLLHCTLSSKQCLVQH 1049

Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
             L++E+F+ ++  I++ + +S + PGEM+G +AAQSIG PATQMTLNTFH+AG+S+ +VT
Sbjct: 1050 HLSKESFDDLMDRIKNIYERSFINPGEMVGSIAAQSIGAPATQMTLNTFHHAGISSASVT 1109

Query: 1105 LGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYD 1164
             GVPRL+E++NV+K  KTP L        N T          + YT L+ + +  E+W+D
Sbjct: 1110 EGVPRLKELLNVSKTPKTPKL--------NKT----------IPYTKLKDLIDDVEIWFD 1151

Query: 1165 PDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAA--VAEK 1222
            PD   ++IEED EF+  + E+  E++ PE    W +R+      MV   +   +  +  K
Sbjct: 1152 PDITNSVIEEDREFINDFIEV--EEVKPEDYCKWTIRLVFGYNKMVSMGVDSDSDILRVK 1209

Query: 1223 INQEFDDDLTCIFNDDN----ADKLILRIRI----MNDEAPKGELNDE-----------S 1263
            I + F D L    + +N      K+++ IR     +++ +    L DE            
Sbjct: 1210 IKELFKDALVIPSDSNNIVNGTVKIVVHIRFRVGSISECSNIDHLTDEVDKSIEAVAYYK 1269

Query: 1264 AEDDVFLKKI-------------------------ESNMLTE-----MALRGVNLLAVMC 1293
            ++ D  L+ +                         E+ ML +     +   G N+  +  
Sbjct: 1270 SKLDELLRTVVISGIEGITKVIIPQKPKNTIVVDPETKMLKDQLQWVVFTEGSNMAGLAE 1329

Query: 1294 HEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYR 1353
             ++VD  +T +N++ E    LGIEA R  L  E   + +  GSYVN+RHLA++ D MT+ 
Sbjct: 1330 CDNVDFYKTVTNNVYETFLYLGIEAGRTQL--EAEFIKTLSGSYVNFRHLALMADVMTFT 1387

Query: 1354 GHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGT 1413
            G +    R G++R   G + R SFE+T++    AA F+ESD L G+++NI++GQ    GT
Sbjct: 1388 GRIQPFNRMGLSRGRAGVITRASFEQTLEQFRRAAAFSESDILNGISQNILMGQRTVAGT 1447

Query: 1414 GDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRL 1473
            G  ++ L+ + LK A  +   S+ E                 + DG              
Sbjct: 1448 GAFTVLLDIDSLK-ASNIDENSFSE----------EEADKKAFIDGF------------- 1483

Query: 1474 SPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGY 1533
                    SP    +  SPT++    P   G+SPS      T P ++  SP  + +SP  
Sbjct: 1484 ------DVSPIRTHLVMSPTNTN--KPKPMGFSPSPVSPRKTHPQFATPSPFITSSSPRS 1535

Query: 1534 SPTSPTYSPS-SPGYSPTSPAYSPTSPSYSPTSPSYS 1569
            SP    ++P  + G SP +PA    S     +SP ++
Sbjct: 1536 SPMLMQFTPRFTSGPSPYNPATGALSKPAFLSSPMFA 1572


>gi|157741530|gb|ABV69470.1| RNA polymerase II largest subunit, partial [Placopyrenium bucekii]
          Length = 989

 Score =  959 bits (2479), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/1018 (50%), Positives = 675/1018 (66%), Gaps = 59/1018 (5%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A E + + + A  +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKAVESE-ELRYAHSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGG------CGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P  D ++P+ K KGG      CG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQA----DSP-DDEDDPIAKEKGGKIRHGGCGNVQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +   + L V + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEETVPE----KSQIWPAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSITVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NIERLK+LV  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNIERLKQLVTNGPQMHPG---ARYIIRENNERIDLRYHKN 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            ++D  L  G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TADIALRTGWKVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ NRP+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNRPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R      D   
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPPALNLVRI-----DGKP 514

Query: 604  G------ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHT 657
            G         AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    
Sbjct: 515  GQPPVERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGA 574

Query: 658  QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
            Q +VNYWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  
Sbjct: 575  QTVVNYWLLHNGFSIGIGDTVPDVGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMN 634

Query: 718  MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
            + E+FE+KV   LN ARD+AG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+
Sbjct: 635  VRETFESKVAAALNGARDQAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQS 694

Query: 778  VEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAV 837
            VEGKRIPFG   RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAV
Sbjct: 695  VEGKRIPFGSKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAV 754

Query: 838  KTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK 897
            KT+ETGYIQRRLVKA+E++ VKYDGTVR+S G+V+QF+YGEDG+D   IESQ +D + M 
Sbjct: 755  KTAETGYIQRRLVKALEEVTVKYDGTVRDSRGNVVQFIYGEDGLDGAHIESQRVDVIAMS 814

Query: 898  KSEFDKAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLAT- 953
             + F+K FR ++ E     W+      E   ++    +++ +FD E ++L  DR  L + 
Sbjct: 815  DAAFEKQFRVDLMEPKKLVWHDRL---EQASEIHGDVDVQKLFDEEFEQLAEDRKFLRSI 871

Query: 954  -EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGE 1012
             + A S D   PLP+N+ R++  A+ TFK+     SD+HP  V+  V +L +RL +V GE
Sbjct: 872  NQAANSADEMMPLPMNVVRILNQARTTFKIQAGAASDLHPSYVIPKVRQLLDRLVIVRGE 931

Query: 1013 DPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            D +S+EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF +S V+PG
Sbjct: 932  DRISLEAQENATLLIKAQLRSRLAFKRLVLEYGLNRLAFDHVVGAIETRFTRSTVSPG 989


>gi|157741622|gb|ABV69516.1| RNA polymerase II largest subunit, partial [Verrucula granulosaria]
          Length = 999

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1023 (49%), Positives = 670/1023 (65%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D  + + AL +R+ K R + I     
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKA-LDSEELRYALSVRDRKKRFELIWRLSS 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+       P  D EEP  K K      GGCG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQAD-----PPIDEEEPNVKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            +++E +PE    K  +   + L + + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  EEEETVPE----KSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPEHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK  V  GP   PG   A+Y+IR+ G+R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPG---ARYVIRETGERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L+ G+KVERHL DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKTGWKVERHLMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+ GIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLKGIVQDTLCGIYKICRRDIF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I+KPRP WTGKQV ++++P  +NL R          
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIVKPRPRWTGKQVISMVLPPALNLVRIDGKEPQPPG 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VN
Sbjct: 520  ERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + + K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDVGTVEKIKLEVDRKKAEVERITQMAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IE Q +D + M  + F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIEKQRVDVIAMSDAAFE 819

Query: 903  KAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E     W       E   ++    +++ +FD E ++L  DR  L      A 
Sbjct: 820  KQFRVDLMESKKLVWQGRL---EQASEIHGDVDVQKLFDEEYERLVEDRKFLRYTNSAAN 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            + D    LP+N+ R++  A+ TF +     SD+HP  V+  V +L +RL +V G+D +S 
Sbjct: 877  AADEMMYLPMNVVRILNQARTTFNIQSGSTSDLHPSYVIPKVKQLLDRLIIVRGDDRISQ 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ+NATL     LRS  A KR+  E+ L R AF+ VIG IE+RF+++  +PGEM+G +A
Sbjct: 937  EAQENATLLIKAQLRSRLAFKRLALEYSLNRLAFDHVIGAIETRFIKATASPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|157741628|gb|ABV69519.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
          Length = 999

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1023 (49%), Positives = 670/1023 (65%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D  + + AL +R+ K R + +     
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKA-LDSEELRYALSVRDRKKRFELVWRLSS 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+       P  D EEP  K K      GGCG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQAD-----PPIDEEEPNLKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            +++E +PE    K  +   + L + + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  EEEETVPE----KSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPEHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK  V  GP   PG   A+Y+IR+ G+R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPG---ARYVIRETGERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L+ G+KVERHL DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKTGWKVERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I+KPRP WTGKQV ++++P  +NL R          
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIVKPRPRWTGKQVISMVLPPALNLVRIDGKEPQPPG 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VN
Sbjct: 520  ERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + + K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDVGTVEKIKLEVDRKKAEVERITQMAVAEDLEALPGMNVREAF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IE Q +D + M  + F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIEKQRVDVIAMSDAAFE 819

Query: 903  KAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E     W       E   ++    +++ +FD E ++L  DR  L      A 
Sbjct: 820  KQFRVDLMESKKLVWQGRL---EQASEIHGDVDVQKLFDEEYERLVEDRKFLRYTNSAAN 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            + D    LP+N  R++  A+ TF +     SD+HP  V+  V +L +RL +V G+D +S 
Sbjct: 877  AADEMMYLPMNAVRILNQARTTFNIQSGSTSDLHPSYVIPKVKQLLDRLIIVRGDDRISQ 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ+NATL     LRS  A KR+  E+ L R AF+ VIG IE+RF+++  +PGEM+G +A
Sbjct: 937  EAQENATLLIKAQLRSRLAFKRLALEYSLNRLAFDHVIGAIETRFIKATASPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|157741626|gb|ABV69518.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
          Length = 999

 Score =  959 bits (2478), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1023 (49%), Positives = 670/1023 (65%), Gaps = 49/1023 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D  + + AL +R+ K R + I     
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKA-LDSEELRYALSVRDRKKRFELIWRLSS 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+       P  D EEP  K K      GGCG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQAD-----PPIDEEEPNLKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            +++E +PE    K  +   + L + + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  EEEETVPE----KSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPEHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
              N++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MGNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK  V  GP   PG   A+Y+IR+ G+R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPG---ARYVIRETGERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L+ G+KVERHL DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKTGWKVERHLMDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I+KPRP WTGKQV ++++P  +NL R          
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIVKPRPRWTGKQVISMVLPPALNLVRIDGKEPQPPG 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VN
Sbjct: 520  ERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + + K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDVGTVEKIKLEVDRKKAEVERITQMAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IE Q +D + M  + F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIEKQRVDVIAMSDAAFE 819

Query: 903  KAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E     W       E   ++    +++ +FD E ++L  DR  L      A 
Sbjct: 820  KQFRVDLMESKKLVWQGRL---EQASEIHGDVDVQKLFDEEYERLVEDRKFLRYTNSAAN 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            + D    LP+N+ R++  A+ TF +     SD+HP  V+  V +L +RL +V G+D +S 
Sbjct: 877  AADEMMYLPMNVVRILNQARTTFNIQSGSTSDLHPSYVIPKVKQLLDRLIIVRGDDRISQ 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVA 1077
            EAQ+NATL     LRS  A KR+  E+ L R AF+ VIG IE+RF+++  +PGEM+G +A
Sbjct: 937  EAQENATLLIKAQLRSRLAFKRLALEYSLNRLAFDHVIGAIETRFIKATASPGEMVGVLA 996

Query: 1078 AQS 1080
            AQS
Sbjct: 997  AQS 999


>gi|149794944|gb|ABR31768.1| RNA polymerase II largest subunit [Ceramothyrium carniolicum]
          Length = 994

 Score =  958 bits (2476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1023 (49%), Positives = 671/1023 (65%), Gaps = 54/1023 (5%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GFM  V  I+ +VC NC KI A  D+ + +QAL IR+ K R   +    K
Sbjct: 2    IKLATPVYHYGFMAKVKKILETVCHNCGKIKA-LDNEELRQALAIRDRKRRFDAVWRLSK 60

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKK---NKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
             +  CE       P +D E P        GGCG  QP +   G+++ A +KA RK  DD+
Sbjct: 61   PRLICEAD-----PPEDEEVPKGATVVRHGGCGNAQPDIRRTGLQLWASWKA-RKGEDDE 114

Query: 200  EQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV--- 256
            +  PE    ++ +  +  L   K ++D+  + +GLN  YARP+WMILQ LP+PPPPV   
Sbjct: 115  DVTPE----RKRIFPQDTLDTFKNLTDDTLEKMGLNLDYARPEWMILQALPVPPPPVRPS 170

Query: 257  ----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
                      R  DDLT +L+ IIR N+ + R E +G P HI  +   LLQ+HIATY DN
Sbjct: 171  ISVDGSGQGQRGEDDLTFKLSDIIRANQAVLRTEVDGTPDHIKIDLWDLLQYHIATYMDN 230

Query: 307  ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
            ++ G  +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GV
Sbjct: 231  DIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGV 290

Query: 367  PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
            P SIA  LTYPETVTP+NIERLK  V  GP   PG   A+Y+IR  G+R+DLR+ K++ +
Sbjct: 291  PRSIARTLTYPETVTPFNIERLKRFVANGPTEHPG---ARYVIRSTGERVDLRHHKRAGE 347

Query: 427  HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 486
             +LE G+KVERHL  GD +LFNRQPSL        R+++MPYSTFRLNLSVTSPYNADFD
Sbjct: 348  MNLEYGWKVERHLMTGDVILFNRQPSLXXXX----RVRVMPYSTFRLNLSVTSPYNADFD 403

Query: 487  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
            GDEMN+HVPQS E++AE+ +L +VP+ IVSPQ N P+MGIVQDTL G  KI +RD F+ K
Sbjct: 404  GDEMNLHVPQSEESKAELSQLCLVPRNIVSPQRNSPLMGIVQDTLCGVYKICRRDIFLNK 463

Query: 547  DVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAA-----WHADN 601
            +  MNI++W  D+DG +PQP ILKPRP WTGKQ+ ++++  Q+NL R        W+ + 
Sbjct: 464  EAVMNIMLWVPDWDGVLPQPAILKPRPRWTGKQMISMVLHPQLNLERPEGKVKDPWNPEA 523

Query: 602  DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            D+G L        I +GEL+ G L KK +G   G +IH ++ E G + A  F    Q +V
Sbjct: 524  DQGHL--------ILEGELMFGILNKKIVGAGAGGVIHTVFNEFGFEQAMSFFNGAQCVV 575

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL + FSIGIGDT+ D  T+  I   + + K  V+N+ K A +  LEP PG  + ++
Sbjct: 576  NYWLLHHGFSIGIGDTVPDPDTVIAIQSAVDEQKKEVENITKIAYNNELEPSPGMNVRQT 635

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE++V   LN AR+ AGS+ + SL + NN   M  +GSKGS INI+QMTA VGQQ VEGK
Sbjct: 636  FESRVMAALNKARETAGSATEDSLKDLNNAIQMARSGSKGSAINIAQMTAIVGQQAVEGK 695

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RI FGF  R+LPHF KDDY   SRGFVENSYL+GLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 696  RINFGFKYRSLPHFAKDDYSAPSRGFVENSYLKGLTPTEFFFHAMAGREGLIDTAVKTAE 755

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYDGT+R+S G+++QF+YGEDG+D   IE+Q +D L       
Sbjct: 756  TGYIQRRLVKALEEVTVKYDGTIRDSRGNIVQFIYGEDGLDGAHIENQRVDILAASDESM 815

Query: 902  DKAFRFEM---DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS 958
             K F+ ++   D   W    +      +L+   +L+ +FD E + L + R  L T +   
Sbjct: 816  RKRFQVDIMSGDVSMWKGRLIQAR---ELQGDADLQQMFDDEWEALTSARKFLRT-MGKG 871

Query: 959  GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVE 1018
             D    LP+N+ R+I  AQK FK+     +D+ P  V+ +V+ L ER+ VV GED +S E
Sbjct: 872  ADEMMQLPMNIARIIDQAQKGFKIRRGDRTDLDPRHVINSVNGLLERIIVVRGEDAISKE 931

Query: 1019 AQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAA 1078
            AQ NATL     LRS  A KR++ EH L R AF+ +IG +ESRFL +   PGEM+G +AA
Sbjct: 932  AQHNATLLIKAQLRSKLAFKRLVMEHSLNRLAFDNIIGGVESRFLAAAANPGEMVGVLAA 991

Query: 1079 QSI 1081
            QSI
Sbjct: 992  QSI 994


>gi|342183052|emb|CCC92532.1| unnamed protein product [Trypanosoma congolense IL3000]
          Length = 1754

 Score =  958 bits (2476), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1271 (42%), Positives = 763/1271 (60%), Gaps = 87/1271 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
             P S  E+ KV  VQF I    +I+  +V  +EH ++ ERGKP  GG++D R+GT D + 
Sbjct: 7    LPPSHMELQKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGKPVRGGINDLRMGTTDFEF 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILAD---EDDHKF 121
             CETC     ECPGHFG++ELA+P+F+IG    VL +++ VC +C  +L +   +D HK 
Sbjct: 67   ACETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLQVLKCVCKSCGALLLNTRADDVHK- 125

Query: 122  KQALKIRNPKNRLKKILDACK-NKTKCEGGDEI-DVPGQDG----------EEPLKKNKG 169
                K+ N    L ++  A K  +TKC    ++ D  G DG               +   
Sbjct: 126  ----KLHNLTG-LSRLRQAAKMAETKCRMSTDLEDEVGDDGLNGGSFGGGGAVAGARAAR 180

Query: 170  GCGAQQPKLT-IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDED 228
            GCGA QP+++   G+      KA     D +              A++V  VL R+SDED
Sbjct: 181  GCGASQPRVSRFYGIYPTLIVKAVHGDQDAEWH------------ADKVRQVLDRVSDED 228

Query: 229  CQLLGLNPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQ 279
             +L+G +P    P  ++L VLP+PPP VRP+         D+LTHQ+  I++ N  LR+ 
Sbjct: 229  ARLMGFDPLRCHPRDLVLTVLPVPPPQVRPAISFGGLKSDDELTHQIMAIVKRNNQLRKD 288

Query: 280  ERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGN 339
            + +   A I    A LLQ H+ATYF+N             + +KS+  RLK K GR+RGN
Sbjct: 289  KESDVQAAIDRSRA-LLQEHVATYFNNSSTYYKPTKVNDSKKLKSLTERLKGKYGRLRGN 347

Query: 340  LMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 399
            LMGKRVDFSARTVIT DP I++D++GVP+S+A+ LT+PE V   N +RL E V    +P 
Sbjct: 348  LMGKRVDFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFVRREVYP- 406

Query: 400  PGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM 459
                 A YI   +G    L  L+  S   L +G  VERH+ +GD VLFNRQP+LH+MS+M
Sbjct: 407  ----SANYIHHPNGTITKLALLRDRSKVTLNIGDIVERHVINGDVVLFNRQPTLHRMSMM 462

Query: 460  GHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQS 519
            GHR++++ Y+TFRLNLS T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP S
Sbjct: 463  GHRVRVLNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPTS 522

Query: 520  NRPVMGIVQDTLLGCRKIT-KRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGK 578
             R    + +     C + T  +DTF++K    ++ +W + +  ++P P +LKPRPLWTGK
Sbjct: 523  QRRAWELCRTV---CSEATGDKDTFLDKYFVQSVALWLDLW--QLPIPAVLKPRPLWTGK 577

Query: 579  QVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLI 638
            QVF+LI+P ++N   T      +DK      D+ V I +GELL G + K  +G + GSLI
Sbjct: 578  QVFSLILP-EVNHPTTP-----HDKPPFPHNDSSVMIRRGELLCGPITKGIVGAAPGSLI 631

Query: 639  HVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNV 698
            HVI+ E G D   +F+   Q +  ++LL   FS+G+ DT+AD  T+  +N+ + K + NV
Sbjct: 632  HVIFNEQGSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADTDTLRQMNEVLVKTRENV 691

Query: 699  KNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAG 758
            + +   A +++L  + G T+++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AG
Sbjct: 692  EKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAG 751

Query: 759  SKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTP 818
            SKG+ +NI Q+   VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P
Sbjct: 752  SKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKP 811

Query: 819  QEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGE 878
             EFFFH M GREGLIDTAVKTS+TGY+QR+L+KA+ED+   YDGTVRN+  ++IQF+YGE
Sbjct: 812  HEFFFHTMAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANEELIQFMYGE 871

Query: 879  DGMDSVWIESQTLDSLKMKKS-EFDKAFRFEMDEE-----NWNPNYMLQEYIDDLKTIKE 932
            DG+D   IE   L  L  + + E ++ +++E + +         NYM       L+   E
Sbjct: 872  DGLDGARIEGGQLFPLPFRDNKEMEQMYKYEYEADGTFTGKVGGNYMDPHVKKMLRADPE 931

Query: 933  LRDVFDAEVQKLEADR--YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDM 990
                   E ++L ADR   +   ++         LPVN  RLI NA+ T      + S++
Sbjct: 932  NVRKLHGEYEQLMADREWSRKMLDLEDREKLKLNLPVNPGRLIQNARSTMG-KRSQVSNL 990

Query: 991  HPMEVVEAVDKLQERL-KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRV 1040
             P+ +++ V KLQE L K+ P           + LS +  ++A   FN+ LR   ASKRV
Sbjct: 991  SPITIIDHVRKLQEDLMKLFPSYHRDADRRITNVLSRQRIESALTLFNVHLRQLLASKRV 1050

Query: 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
            LKE++L  +AFE+++ EI +++ QSL  PGE IG +AAQS GEPATQMTLNTFH AG+S+
Sbjct: 1051 LKEYKLNDKAFEYLLKEIRTKYHQSLATPGENIGAIAAQSCGEPATQMTLNTFHNAGISS 1110

Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATE 1160
            KNVTLGVPRL E++NV++  K  S++V L P  +  K  A+  Q  +EY TL S+T+  +
Sbjct: 1111 KNVTLGVPRLLELLNVSRHQKHASMTVTLFPPWDK-KRVAQKAQHLIEYCTLESITQRIQ 1169

Query: 1161 VWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKI------SPWLLRIELNREMMVDKKL 1214
              YDPDP  T++E D + ++  +++ DE  A +++      SPW++R+EL+ +M+ DK L
Sbjct: 1170 FIYDPDPRHTVVEVDRDILELEWDVMDESDAEQRVREVEEGSPWVVRLELDVDMVTDKAL 1229

Query: 1215 SMAAVAEKINQ 1225
             M  V + I +
Sbjct: 1230 DMKDVKQAIQR 1240



 Score =  143 bits (361), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 133/420 (31%), Positives = 197/420 (46%), Gaps = 47/420 (11%)

Query: 1297 VDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1356
            ++A +T+SN + E+  +LGIEA R  +L ELR      G  +NYRH  IL DT+  RG+L
Sbjct: 1346 INATKTSSNKVPEVCSLLGIEAARYRMLTELREAYLAYGLNINYRHYTILVDTICQRGYL 1405

Query: 1357 MAITRHGINRNDT-GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGD 1415
            MA++R GINR+DT GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG  A +GTG 
Sbjct: 1406 MAVSRTGINRSDTSGPLMRCSFEETVKVLMAAASFGEHDPVRGVSANLVLGNQARVGTGL 1465

Query: 1416 CSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSP 1475
              L +N   L+ A+  +              A +P      + G+   G     NL+ S 
Sbjct: 1466 FDLIINMPALQQAVTQE-------------DAVAPGKNVNVYHGL---GSTLQQNLQSSM 1509

Query: 1476 V---TDAQFSPYVGGMAFSPTSSPG------YSPSSPGYSPSSP---GYSPTSPGYSPTS 1523
            V    +   +P+V   +      P        + +S   +PS P    +  ++  +S   
Sbjct: 1510 VYRPRENDATPFVNDASIFFHGGPAGGSSSAPATASAPLNPSLPYGGRFEASTVHHSQIY 1569

Query: 1524 PGYSPTSPGYSPTSPTYSPSSPGYSPTSP-AYSPTS---PSYSPTSPSYSPTSP---SYS 1576
            P  S T   YS    +YS     YS  S  A++P S   PS +  S  YS  S     YS
Sbjct: 1570 PSASVTE--YSAREVSYSQQ---YSVASASAFNPISTHLPSTAQVSVDYSAMSSYHLQYS 1624

Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT-SPAYSPTSPSYSPTS 1635
              +PS   + P  S TS + +P++     TS  Y P++ + +   S AY+ T     P+ 
Sbjct: 1625 VAAPSMHTSFPR-SETSMA-TPSANREQSTSAPYMPSAMSSTALPSHAYASTEVDLLPSD 1682

Query: 1636 PSYSPTS---PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
             S S ++   P++SP     S           A    +      S +Y PT+   S   P
Sbjct: 1683 NSRSQSALYVPTFSPAHAGASTHHNEPGDRQRAGGTAAAEDEDLSVNYLPTTQVQSSAVP 1742



 Score = 42.0 bits (97), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 72/165 (43%), Gaps = 12/165 (7%)

Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS-YSPTSPTYSPTS 1691
            P    +  ++  +S   PS S T   YS    +YS     YS  S S ++P S     T+
Sbjct: 1553 PYGGRFEASTVHHSQIYPSASVTE--YSAREVSYSQQ---YSVASASAFNPISTHLPSTA 1607

Query: 1692 PSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPS--SPTYS 1749
                  SA  S  L YS ++P +  + P S TS   +P+++    TS  Y PS  S T  
Sbjct: 1608 QVSVDYSAMSSYHLQYSVAAPSMHTSFPRSETSM-ATPSANREQSTSAPYMPSAMSSTAL 1666

Query: 1750 PSSPYNAGGGNPDYSPSSPQYSPSAGYSPS-APGYSPSSTSQYTP 1793
            PS  Y       D  PS    S SA Y P+ +P ++ +ST    P
Sbjct: 1667 PSHAY--ASTEVDLLPSDNSRSQSALYVPTFSPAHAGASTHHNEP 1709


>gi|157741548|gb|ABV69479.1| RNA polymerase II largest subunit, partial [Staurothele immersa]
          Length = 999

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1024 (49%), Positives = 677/1024 (66%), Gaps = 51/1024 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D    + A+ +R+ K R   I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEDLRYAVSVRDRKKRFDLIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGG------CGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P +D ++P  K KGG      CG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQA----DSP-EDDDDPNAKEKGGKIRHGGCGNAQPAIRKAGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            D++E +PE    K  +     L V + ++DE    LG+N  +ARP+WMILQ LP+PPPPV
Sbjct: 114  DEEETVPE----KSQIWPAHALQVFQHLTDETLDTLGMNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RL+ KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLRGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVTP+NI +LK L+  GP   PG   A+YIIR++ +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTPFNISKLKNLIIRGPESHPG---ARYIIRENNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
                 L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  LKGIALKTGWKVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            + ++  MNI++W  D+DG +P P I KPRP WTGKQ+ ++++P  +NL R     A    
Sbjct: 460  LSREAVMNIMLWVPDWDGVIPLPAIFKPRPRWTGKQIISMVLPPALNLVRIDG-KASQPP 518

Query: 604  G--ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            G     AGD+ + +  G+L+ G   KK++GT +  ++H I+ E G + A  F    Q +V
Sbjct: 519  GERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGVVHTIFNEFGHETAMAFFNGAQTVV 578

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+
Sbjct: 579  NYWLLHNGFSIGIGDTVPDFGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMNVRET 638

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGK
Sbjct: 639  FESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGK 698

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 699  RIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 758

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M    F
Sbjct: 759  TGYIQRRLVKALEEVTVKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDIIAMSDHAF 818

Query: 902  DKAFRFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQLAT--EIA 956
            +K F  ++ E       + Q+ ++    I    +++ +FD E ++L  DR  L +  + A
Sbjct: 819  EKLFHVDLMEPK---KLVWQDRLEQASEIHGDVDVQKLFDEEYEQLLEDRNFLRSIKKAA 875

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
             SGD   PLP+N+ R++  A+ TFK+     SD+HP  V+  + +L +RL +V GED +S
Sbjct: 876  PSGDEMMPLPMNVVRILNQARTTFKIQSGALSDLHPSYVIPKIKQLLDRLIIVRGEDRIS 935

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
            +EAQ+NATL     LRS  A KR++ E+ L R AF+ V+G +E+RF++++ +PGEM+G +
Sbjct: 936  LEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAVETRFIKAIASPGEMVGVL 995

Query: 1077 AAQS 1080
            AAQS
Sbjct: 996  AAQS 999


>gi|157741522|gb|ABV69466.1| RNA polymerase II largest subunit, partial [Placidium arboreum]
          Length = 989

 Score =  957 bits (2473), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1014 (50%), Positives = 669/1014 (65%), Gaps = 51/1014 (5%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  ++ +VC NC KI A  D  + + AL +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKLLETVCHNCGKIKA-VDSEELRYALSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+     D P  D ++P+ K K      GGCG  QP +   G+++ A+ K   +K+
Sbjct: 60   KQNVCQA----DSP-DDEDDPVAKEKSGKVRHGGCGNAQPAIRKSGLELWAQCKP--RKS 112

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            DD+E   E V  K  +   + L V + ++DE  + LGLN  +ARP+WMILQ LP+PPPPV
Sbjct: 113  DDEE---ETVSEKSQIWPAQALQVFQHLTDETLETLGLNLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRIHAEGAPDHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK+ V  GP   PG   A+YIIR+  +R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKQFVTNGPEMHPG---ARYIIREHNERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L++G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNA
Sbjct: 347  TSQIALKVGWKVERHIVDGDVILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            + ++  MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     A    
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMVSMVLPSALNLVRIDG-KASQPP 518

Query: 604  GILTA--GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            G   A  GD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q ++
Sbjct: 519  GERFAPVGDSGLFVADGQLMFGMFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVI 578

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL N FSIGIGDT+ D  T+E I + + K K  V+ + + A  + LE  PG  + E+
Sbjct: 579  NYWLLHNGFSIGIGDTVPDVGTVEKIKNEVDKKKAEVERITQSAVAEDLEALPGMNVRET 638

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE+KV+  LN ARDEAGS+ + SL +SNN   M  AGSKGS INISQMTA VGQQ+VEGK
Sbjct: 639  FESKVSAALNGARDEAGSATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGK 698

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RIPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 699  RIPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAE 758

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F
Sbjct: 759  TGYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAF 818

Query: 902  DKAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIA 956
            +K FR ++ E     W+      E   ++    +++ +FD E ++L  DR  L    + A
Sbjct: 819  EKQFRVDLMEPKKLVWHDRL---EQASEIHGDIDVQKLFDEEYEQLAEDRRFLRYINKAA 875

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            TS D    LP+N+ R++  AQ TFK+     SD+HP  V+  V +L  RL +V G D +S
Sbjct: 876  TSSDEMMMLPMNVVRILNQAQTTFKIQSGATSDLHPSYVIPKVKQLLGRLVIVRGNDKIS 935

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            +EAQ NATL     LRS  A KR++ E+ L R AF+ V+G IE+RF+++  +PG
Sbjct: 936  LEAQDNATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKATASPG 989


>gi|316997001|dbj|BAJ52628.1| RNA polymerase II largest subunit [Stephanoeca diplocostata]
          Length = 999

 Score =  956 bits (2470), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/983 (50%), Positives = 670/983 (68%), Gaps = 60/983 (6%)

Query: 491  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
            N+H+PQS+ TRAE+ E+M V + I++PQ+NRPVMGIVQDTL   R ++KRDTF+++   M
Sbjct: 1    NLHMPQSYLTRAEIEEMMKVERNILTPQANRPVMGIVQDTLRAARMMSKRDTFMDRQQVM 60

Query: 551  NILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWH---ADN-DKGIL 606
            ++LM++ ++DG++P P ILKP+ LWTGKQ+ +L+I +++NL +  + H    DN D   +
Sbjct: 61   HLLMFYPEWDGRIPCPCILKPKELWTGKQLLSLVIDEKVNLDQKHSAHNRDEDNSDNRWI 120

Query: 607  TAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 666
               DT V I  G LLSG +CK TLG  +GSL+H+   E G   A+   G+ Q L+N WL+
Sbjct: 121  PYHDTRVLIRGGVLLSGLICKATLGAKSGSLMHITRLECGYQVAKNLYGNLQTLINNWLV 180

Query: 667  QNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKV 726
             N  SIGIGDTIAD +T   I + + KA   V  +I++A    LE  PG T+ ++FEN+V
Sbjct: 181  GNGASIGIGDTIADDETFAEIQELLDKASKEVNRIIRKAYRGMLEATPGNTIRQTFENQV 240

Query: 727  NQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 786
            N+VLN AR + G SA+ SLSE NN K M  +GSKG  +NISQ+ ACVGQQNVEGKRI FG
Sbjct: 241  NRVLNKARSDTGQSAETSLSEYNNFKCMSRSGSKGGTLNISQVIACVGQQNVEGKRIKFG 300

Query: 787  FVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 846
            F  R+LPH+ KDDYGP+S+GFV NSYLRGLTP E FFHAMGGREGLIDTAVKT+ETGYIQ
Sbjct: 301  FQYRSLPHYIKDDYGPDSKGFVFNSYLRGLTPTELFFHAMGGREGLIDTAVKTAETGYIQ 360

Query: 847  RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFR 906
            RRL+K+ME + ++YDG+VRNS G++ Q LYGEDGM + W+E Q L++LK   ++F+K FR
Sbjct: 361  RRLIKSMEGLTLRYDGSVRNSNGELCQLLYGEDGMAAEWLEFQNLNTLKQSDADFEKQFR 420

Query: 907  FEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLP 966
            F+++E      Y+L +  + + T   +      E ++L+ DR QL   +   G     +P
Sbjct: 421  FDLNEYEMRK-YVLDDIAEKVSTNPSVAHELAEEFEQLKRDR-QLLRILRPDGKDQVVMP 478

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +NL RLI NAQK FK+D +  SD++P  VV+ V  L +RL VV G DPLS +AQ NAT+F
Sbjct: 479  LNLPRLILNAQKQFKLDEKTVSDLNPETVVQDVRDLIKRLVVVKGSDPLSQDAQFNATIF 538

Query: 1027 FNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1086
               L+R+  ++K+++ + RL+ EAF+W++GE+E+ F+Q+   PGEM+G +AAQS+GEPAT
Sbjct: 539  MTSLIRAHLSTKQLMTKSRLSHEAFKWIVGEVEASFMQAQSNPGEMVGALAAQSLGEPAT 598

Query: 1087 QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQC- 1145
            QMTLNTFH+AGVSAKNVTLGVPRL+EIINV+K+ KTPSL+V L+P   ST E  K V+  
Sbjct: 599  QMTLNTFHFAGVSAKNVTLGVPRLKEIINVSKQPKTPSLTVKLEPEYAST-ENTKYVEVF 657

Query: 1146 -ALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIEL 1204
             ALE+TTL+ +T++TE+ YDPDP  T IEEDV+ V+ Y+ + ++D   + +SPW+LRIEL
Sbjct: 658  NALEHTTLKQITKSTEIHYDPDPRTTTIEEDVDMVQVYHTLEEDDF--DNLSPWMLRIEL 715

Query: 1205 NREMMVDKKLSMAAVAEKINQEFDDDLTCIFN-----DDNADKLILRIRIMNDEAPKGEL 1259
            + E M  K + M  +AEK+N+ F  DL CI +     D++ D L++RIR+      K E 
Sbjct: 716  DFEKMNPKGIKMDVLAEKVNESFKRDLQCIVSDDNDFDEDEDHLVMRIRLRTQ--GKDES 773

Query: 1260 NDESAEDDVFLKKIESNMLTEMALRGV--------------------------------- 1286
              + AED   L++IE N+L+EM+L G+                                 
Sbjct: 774  ASDEAEDHELLQQIEHNLLSEMSLSGIQDISRVYIVTPKEDEKAKHRIFINEDGKFDTIN 833

Query: 1287 ---------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSY 1337
                     +L+A M    VD  RTT N + EI   LGIEAVR+++  E+  VISF GSY
Sbjct: 834  EVHLETDGSDLMATMRERGVDCVRTTCNDICEIFYCLGIEAVRKSIDTEMSAVISFGGSY 893

Query: 1338 VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLR 1397
            VN RHL++LCD MT RG+LMAITRHGINR +TG +MRCSFEETVDIL++AA  AE+D L 
Sbjct: 894  VNQRHLSLLCDIMTSRGYLMAITRHGINRQNTGALMRCSFEETVDILMEAAAHAENDRLE 953

Query: 1398 GVTENIMLGQLAPIGTGDCSLYL 1420
            GV+ N+M+G LAP GTG   L  
Sbjct: 954  GVSGNLMVGNLAPCGTGTFGLLF 976


>gi|226876154|gb|ACO89398.1| RNA polymerase II largest subunit, partial [Capronia semiimmersa]
          Length = 993

 Score =  955 bits (2468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1018 (49%), Positives = 676/1018 (66%), Gaps = 45/1018 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P+FH GFM  V  I+ +VC NC KI A  D+  F+QA+  R+PK R + +    K
Sbjct: 1    IKLATPVFHYGFMNKVKKILETVCHNCGKIKA-LDNADFQQAIATRDPKRRFEAVWRLSK 59

Query: 143  NKTKCEGGDEIDVPGQDGEE----PLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDD 198
             +  CE       P +D ++    P     GGCG  QP +   G+ + A +K  R+ +DD
Sbjct: 60   PRNICEAD-----PPEDADQLSKGPAPPKHGGCGNAQPDIRRTGLHLYATWKP-RRGDDD 113

Query: 199  QEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV-- 256
            ++  P+    K+ +  + VL   + ++DE  Q++G++  YARP+WMIL  LP+PPPPV  
Sbjct: 114  EDTTPD----KKRIFPQDVLNTFRTLTDETLQMMGISLDYARPEWMILTALPVPPPPVRP 169

Query: 257  -----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
                       R  DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY D
Sbjct: 170  SISIDGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMD 229

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            NE+ G  +A  ++GRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++G
Sbjct: 230  NEIAGLDKAQHKTGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVG 289

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP SIA  LT+PE VT  NI++LK LV  GP+  PG   A+Y+IRD G+R+DLR+ K +S
Sbjct: 290  VPRSIARTLTFPERVTQKNIDKLKRLVANGPNEHPG---ARYVIRDSGERIDLRHHKNAS 346

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
            + +L+ G+ VERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNADF
Sbjct: 347  EMNLQHGWIVERHIQDGDVILFNRQPXXXXXX----RVRVMPYSTFRLNLSVTAPYNADF 402

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS E+RAE+  L MVP  IVSPQ N P+MGI+QDTL G  KI +RD F+ 
Sbjct: 403  DGDEMNLHVPQSQESRAELANLCMVPLNIVSPQRNAPLMGIIQDTLCGIYKICRRDIFLT 462

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGI 605
            ++  MNI++W  D+DG +PQP I+KP P WTGKQ+ ++++P  +NL R  A   D     
Sbjct: 463  REQVMNIMLWVPDWDGVIPQPAIIKPTPRWTGKQMISMVLPPALNLERLDAKGEDP---Y 519

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
            + A DT + + +G L+ G L KK +GT  G +IH I+ E G + A  F    Q +VNYWL
Sbjct: 520  VPANDTGLIVLEGNLMFGVLSKKFVGTGAGGIIHTIYNEFGWETALSFFNGAQTVVNYWL 579

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGDT+ D  T++ I + +   K  V++L K+A+ + LEP PG  + ++FE+K
Sbjct: 580  LHNGFSIGIGDTVPDPDTVQKIQNAVDTKKAEVEDLQKKAEAEDLEPSPGMNVRQTFESK 639

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
                LN ARD+AG++ + SL + NN   M  AGSKGS INI+QMTA VGQQ VEGKRIPF
Sbjct: 640  AMNALNQARDQAGAATEDSLKDLNNAITMARAGSKGSTINIAQMTAIVGQQAVEGKRIPF 699

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF  R+LPHFTKDDY   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 700  GFKYRSLPHFTKDDYSAPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYI 759

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IE+Q +D + M    F+  +
Sbjct: 760  QRRLVKALEEVTVKYDSTVRDSRGNIVQFIYGEDGLDGAHIENQKVDIITMSTKAFNDRY 819

Query: 906  RFEM---DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSS 962
              ++   D + W    +LQ    +++   EL+++FD E   L+  + QL   +    + S
Sbjct: 820  HVDIMSGDVKMWK-GRLLQAR--EIQGDVELQEMFDLEFANLKESQ-QLLRNMGKGTEDS 875

Query: 963  WPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKN 1022
              LP+N+ R+I  AQK FK+     +D+ P   + AV++L ERL +V G+DP+S EAQ N
Sbjct: 876  MQLPLNIGRIIDQAQKNFKIRRGDKTDLDPRYALTAVNQLLERLVIVRGDDPISKEAQDN 935

Query: 1023 ATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            ATL     LRS  A KR++ EH + R AF+ +IG +ESRF  +  APGEM+G +AAQS
Sbjct: 936  ATLLLKAQLRSRLAYKRLVLEHGVNRLAFDNIIGAVESRFTAANAAPGEMVGVLAAQS 993


>gi|157741478|gb|ABV69444.1| RNA polymerase II largest subunit, partial [Bagliettoa cazzae]
          Length = 999

 Score =  955 bits (2468), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1020 (49%), Positives = 677/1020 (66%), Gaps = 43/1020 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKI--LDA 140
            ++LA P++H GF+  V  I+ +VC NC KI A  D  + + AL +R+ K R + I  L  
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKA-FDSEELRYALSVRDRKKRFELIWRLSQ 59

Query: 141  CKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
             +N  + +G ++ D P      P K   GGCG  QP +   G+++ A+YK  RK  D++E
Sbjct: 60   KQNVCQADGPEDEDDPNARDRIP-KAKHGGCGNAQPAIRKTGLELWAQYKP-RKGEDEEE 117

Query: 201  QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV---- 256
             +PE    K  +   + L V + ++DE  + LGLN  +ARP+WMILQ LP+PPPPV    
Sbjct: 118  TVPE----KSQIWPAQALQVFQHLTDETLETLGLNLDFARPEWMILQSLPVPPPPVRPSI 173

Query: 257  ---------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNE 307
                     R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN+
Sbjct: 174  SVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDND 233

Query: 308  LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 367
            +    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP
Sbjct: 234  IANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVP 293

Query: 368  WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 427
             SIA  LTYPETVT +N+ +LK+LV  GP+  PG   A++I+R+  +R+DLRY K +S+ 
Sbjct: 294  RSIAKTLTYPETVTRWNMHKLKQLVVNGPNNHPG---ARFIVREHNERIDLRYHKNTSEI 350

Query: 428  HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDG 487
             L+ G+KVERH+ DGDF+LFNRQP          R+++MPYSTFRLNLSVT+PYNADFDG
Sbjct: 351  TLKTGWKVERHIKDGDFILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDG 403

Query: 488  DEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
            DEMN+HVPQ+ E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++
Sbjct: 404  DEMNLHVPQNEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRE 463

Query: 548  VFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILT 607
              MNI++W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R      +   G   
Sbjct: 464  EVMNIMLWVPDWDGVIPQPAIFKPRPRWTGKQMISMVLPPALNLVRIDG-KPNQPPGERF 522

Query: 608  A--GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
            A  GD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VNYWL
Sbjct: 523  APIGDSGLFVSDGQLMFGLFNKKSVGTGSNGIIHTIYNEFGHEVAMAFFNGAQTVVNYWL 582

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+FE+K
Sbjct: 583  LHNGFSIGIGDTVPDVGTVEKIKSEVDKQKAEVERITQSAVAEDLEALPGMNIRETFESK 642

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            V   LN AR+ AG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR+PF
Sbjct: 643  VLAALNGAREGAGNATEGSLKDINNAITMARAGSKGSTINISQMTAIVGQQSVEGKRVPF 702

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 703  GFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYI 762

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRLVKAME++ VKYD TVR+S G+++QF+YGEDG+D   IE+Q +D + M    F+K F
Sbjct: 763  QRRLVKAMEEVTVKYDSTVRDSRGNIVQFIYGEDGLDGAHIENQRVDIIAMSDDAFEKQF 822

Query: 906  RFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR--YQLATEIATSGD 960
            R ++ E     W       E   ++    +++ +FD E ++L  DR   +   + A S +
Sbjct: 823  RVDLMEPKKLVWRDRL---EQASEIHGDVDVQKLFDEEYEQLLEDRKFLRFIKKAANSSE 879

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
               PLP+N+ R++  A+ TFK+     SD+HP  V+  V +L +RL +V G D +S+EAQ
Sbjct: 880  EMMPLPMNIVRILNQARTTFKIPTGAASDLHPSYVILKVKQLLDRLVIVRGGDRISLEAQ 939

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            +NAT+     LRS  A KR++ E+ L R AF+ VIG IE+RF+++  APGEM+G +AAQS
Sbjct: 940  ENATMLIKAHLRSRLAFKRLVMEYSLNRLAFDHVIGAIETRFIKATAAPGEMVGVLAAQS 999


>gi|229428543|gb|ACQ65686.1| RNA polymerase II largest subunit [Alyxoria varia]
          Length = 979

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1008 (50%), Positives = 673/1008 (66%), Gaps = 47/1008 (4%)

Query: 92   IGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGD 151
            IGF+     ++ +VC NC K L D ++ ++  A+ IR+PK R  ++   CK K KC+  +
Sbjct: 1    IGFITKTKKLLETVCHNCGKPLQDINNPEYAHAINIRDPKWRFNEVHKLCKKKKKCDLDE 60

Query: 152  EIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT 211
                  ++ ++P     GGCG + P +  EG+++I  YK   K ++D+E+     + K+ 
Sbjct: 61   PAKEGEEEKKKP---GHGGCGNRHPDIRKEGLRLIGTYKPV-KSDEDEEEGGNRQDEKRP 116

Query: 212  LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS------------ 259
            +T +  L V K +++E    +GLN  +ARP+W++L VLP+PPP VRPS            
Sbjct: 117  ITPQMALDVFKILTNETISEIGLNNDFARPEWLVLTVLPVPPPHVRPSVQAGAGSGPKSE 176

Query: 260  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
            DDLT++L  I+R N N+RR E  G+P H+ +EF  LLQFH+ATY DN + GQP+A Q+SG
Sbjct: 177  DDLTYKLGDIVRANSNVRRCESEGSPQHVKNEFESLLQFHVATYMDNNIAGQPQALQKSG 236

Query: 320  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
            RP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP I++D++GVP  +A  LTYPE 
Sbjct: 237  RPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISLDEVGVPLQVARTLTYPEI 296

Query: 380  VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRL-DLRYLKKSSDHHLELGYKVERH 438
            VTP NI+ L  L++ GP   PG   A +++  D  ++ DL+ ++  +   +E G+ VERH
Sbjct: 297  VTPRNIDFLGHLIDRGPTEWPG---ANFVMNSDKTKVWDLKRVR--TKPPIEYGWIVERH 351

Query: 439  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
                  +L               R+++M ++TFRLNLSVTSPYNADFDGDEMNMHVPQ+ 
Sbjct: 352  ------ILTEXXXXXXXXXXXXXRVRVMQFNTFRLNLSVTSPYNADFDGDEMNMHVPQTN 405

Query: 499  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
            ETRAE+ EL MVPK IVSPQ N P+MGIVQDTL G  KI +RD F+ +D  MN+LMW  D
Sbjct: 406  ETRAEIAELCMVPKNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTQDEVMNVLMWVPD 465

Query: 559  FDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD--NDKGILTAGDTLVRIE 616
            +DG +PQP ILKP+P WTGKQV ++ +P  INL RT+    +  ND G+         I 
Sbjct: 466  WDGIIPQPAILKPKPRWTGKQVISMALPSGINLLRTSKEGMNPLNDDGLF--------IS 517

Query: 617  KGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD 676
             GEL+ G L KKT G S G +IHV++ E GP AA +F    Q +VNYWLL N FSIGIGD
Sbjct: 518  NGELMFGLLNKKTAGASGGGIIHVVFNEQGPQAAVRFFNGAQQIVNYWLLHNGFSIGIGD 577

Query: 677  TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDE 736
            TI D  T   I   I + K  V+ + K A D  LEP PG  + E+FE+KV++ LN+ARD 
Sbjct: 578  TIPDDATTSQIVKAIEEKKTEVEEITKDATDNKLEPLPGMNIRETFESKVSRALNSARDN 637

Query: 737  AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFT 796
            AG+  + SL ++NN   M  AGSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFT
Sbjct: 638  AGAKTEDSLKDNNNAVQMARAGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFT 697

Query: 797  KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDI 856
            KDDY PE+RGFVENSYL+GLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+
Sbjct: 698  KDDYSPEARGFVENSYLKGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDV 757

Query: 857  MVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNP 916
            M KYD TVRNSLGD++QF+YGEDG+D+V+IE Q LD +      FDK  +F++D  +  P
Sbjct: 758  MAKYDYTVRNSLGDIVQFVYGEDGLDAVYIEQQRLDIIVCSDEIFDK--KFKVDVMDRAP 815

Query: 917  NYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLI 973
               LQE ++    I    +++ +FD E + L+ DR     E          LP+N++R+I
Sbjct: 816  ---LQESLEVSSEIAGNIKIQALFDEEYRLLKKDR-DFLRENKHDDSELMQLPLNIERMI 871

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
              A+ TF++     SD+ P   +  V +L ERL +V G+DPLS EAQ++AT+    L+RS
Sbjct: 872  DTAKTTFRIKDGAKSDLSPSYAIPQVRELLERLVIVRGDDPLSQEAQESATILVKALIRS 931

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
              A KRV++E+ L R AF+ +IG+IESRF ++ V+PGEM+G +AAQSI
Sbjct: 932  RLAFKRVVEEYSLNRLAFDNIIGDIESRFTRAAVSPGEMVGVLAAQSI 979


>gi|83320448|gb|ABC02851.1| RNA polymerase II largest subunit, partial [Rhopalomyces elegans]
          Length = 792

 Score =  954 bits (2465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/803 (58%), Positives = 595/803 (74%), Gaps = 30/803 (3%)

Query: 82  HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
           H+ELAKP++H+GF+  V  I+  VCF CSK+  DE + +F  A++I +PK RLK + + C
Sbjct: 1   HVELAKPVYHVGFLTKVKKILECVCFYCSKLKVDESNPRFGLAMRIHDPKARLKAVWELC 60

Query: 142 KNKTKCEGGDEIDVPGQDGE---------EPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQ 192
           K KT C+  DE      D +         +P K   GGCG +QP L  EG+K+   Y  Q
Sbjct: 61  KVKTMCDQDDEDADKRDDEDGEDEDTLLGKPKKHRHGGCGRRQPTLRKEGLKL---YATQ 117

Query: 193 RKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIP 252
           R  + +Q     P+E KQ +  ++ L +LKRISD+D + +GL+ ++ARP+ +I+ VLP+P
Sbjct: 118 RSSSKEQN----PLEGKQLVKPDQALQILKRISDDDLESMGLSVEFARPENLIIMVLPVP 173

Query: 253 PPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIAT 302
           PP VRPS          DDLTH+L+ +++ N  + R+ER+GAP H+  EF  LLQFH+AT
Sbjct: 174 PPQVRPSIQMDGTSKGEDDLTHKLSDVLKANAXVARRERDGAPHHVTEEFETLLQFHVAT 233

Query: 303 YFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINID 362
           Y DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP ++ID
Sbjct: 234 YMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSID 293

Query: 363 QLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK 422
           ++GVP  IA NLT+PE VTPYN+ +L+ELV  GP+  PG   A+Y+ RD+G+R+DLR+ +
Sbjct: 294 EVGVPLLIAKNLTFPEIVTPYNVGKLQELVANGPNAHPG---ARYVYRDNGERIDLRFNR 350

Query: 423 KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYN 482
           +  D  L+ G++VERHL DGD V+FNRQPSLHKMS+MGHR+++MP+ TFRLNLSVT+PYN
Sbjct: 351 RGGDIPLQYGWRVERHLVDGDLVIFNRQPSLHKMSMMGHRVRVMPHHTFRLNLSVTTPYN 410

Query: 483 ADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDT 542
           ADFDGDEMNMHVPQS E++AE+ E+ MVP+ IVSPQ N PVMGIVQDTL G    T+RDT
Sbjct: 411 ADFDGDEMNMHVPQSLESKAEIQEICMVPRQIVSPQKNAPVMGIVQDTLCGVNIFTRRDT 470

Query: 543 FIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADND 602
           F+ +   MNILMW  ++DG++P P ILKP+PLWTGKQ+  LIIPK ++     + + D +
Sbjct: 471 FLSRQQTMNILMWVPNWDGRIPAPAILKPKPLWTGKQMLTLIIPKGVSYTGAHSGNPDGE 530

Query: 603 KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
              LT  DT V IE GELL+G +CKKT+G  + +LI VI  E GP+  + F    Q + N
Sbjct: 531 HPHLTPNDTKVLIENGELLTGIVCKKTVGVGS-ALIQVIMREHGPEVTKYFFNGIQHITN 589

Query: 663 YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
           YWLLQ+ FSIGIGD +AD  TMETI +TI+ AK  V  +I +AQ   L+ EPG T+ E+F
Sbjct: 590 YWLLQHGFSIGIGDAVADRHTMETITNTITNAKTAVNEVIYEAQQDRLDCEPGMTLRETF 649

Query: 723 ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
           E KVN+ LN AR+ AG SAQ SL  +NN+K MVTAGSKG+++NI QMTACVGQQNVEGKR
Sbjct: 650 EYKVNRELNRARENAGKSAQSSLRRNNNVKLMVTAGSKGNYLNICQMTACVGQQNVEGKR 709

Query: 783 IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
           IPFGF  RTLPHFTKDD+ P SRGFV+NSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 710 IPFGFQYRTLPHFTKDDHTPASRGFVDNSYLRGLTPTEFFFHAMSGREGLIDTAVKTAET 769

Query: 843 GYIQRRLVKAMEDIMVKYDGTVR 865
           GYIQRRLVKA+ED+MVKYDGTVR
Sbjct: 770 GYIQRRLVKALEDVMVKYDGTVR 792


>gi|157741606|gb|ABV69508.1| RNA polymerase II largest subunit, partial [Bagliettoa steineri]
          Length = 988

 Score =  954 bits (2465), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1009 (49%), Positives = 668/1009 (66%), Gaps = 43/1009 (4%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGG--- 150
            F+  V   + +VC NC KI A  D  + + AL +R+ K R + I    + +  C+     
Sbjct: 1    FLGRVKKTLETVCHNCGKIKA-LDSEELRYALSVRDRKKRFELIWRLSQKQNVCQADGPE 59

Query: 151  DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
            DE D   +D    +K   GGCG  QP +   G+++ A+YK  RK +D++E +PE    K 
Sbjct: 60   DEDDPNARDKTSKIKH--GGCGNAQPAIRKTGLELWAQYKP-RKGDDEEEAVPE----KS 112

Query: 211  TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV-------------R 257
             +   + L V + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV             R
Sbjct: 113  QIWPAQTLQVFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPVRPSISVDGSGQGQR 172

Query: 258  PSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQR 317
              DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN++    +A  +
Sbjct: 173  GEDDLTFKLGDIIRANQNLLRINAEGAPDHIAKELQALLQYHVATYMDNDIANLDKAQHK 232

Query: 318  SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYP 377
            SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYP
Sbjct: 233  SGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYP 292

Query: 378  ETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVER 437
            ETVT +N+ +LK+LV  GP+  PG   A++IIR+  +R+DLRY K +S+  L  G+KVER
Sbjct: 293  ETVTKWNMSKLKQLVVNGPNNHPG---ARFIIREHNERIDLRYHKNTSEIVLRTGWKVER 349

Query: 438  HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
            H+ DGD++LFNRQP          R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS
Sbjct: 350  HIKDGDYILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQS 402

Query: 498  FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 557
             E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++  MNI++W  
Sbjct: 403  EESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVP 462

Query: 558  DFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKGILTAGDTLVRIE 616
            D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +    +     GD  + + 
Sbjct: 463  DWDGVIPQPAIFKPRPRWTGKQMISMVLPSALNLVRIDGKPSQPPGERFAPVGDGGLFVS 522

Query: 617  KGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD 676
             G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VNYWLL N FSIGIGD
Sbjct: 523  DGQLMFGLFNKKSVGTGSNGIIHTIYNEFGHEVAMAFFNGAQTVVNYWLLHNGFSIGIGD 582

Query: 677  TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDE 736
            T+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+FE+KV+  LN ARDE
Sbjct: 583  TVPDVGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALNGARDE 642

Query: 737  AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFT 796
            AG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHF 
Sbjct: 643  AGTATENSLKDINNAITMARAGSKGSTINISQMTAIVGQQSVEGKRIPFGFKYRTLPHFA 702

Query: 797  KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDI 856
            KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E++
Sbjct: 703  KDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEV 762

Query: 857  MVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN--- 913
             VKYD TVR+S G+++QF+YGEDG+D   IE Q +D + M  S F+K FR ++ E     
Sbjct: 763  TVKYDSTVRDSRGNIVQFIYGEDGLDGAHIEHQRVDVIAMSDSAFEKQFRIDLMEPKKLV 822

Query: 914  WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIATSGDSSWPLPVNLKR 971
            W       E   ++    +++ +FD E ++L  DR  L    + ATS D   PLP+N+ R
Sbjct: 823  WRNRL---EQASEIHGDVDVQKLFDEEYEQLLEDRKFLRHMKKAATSSDEMMPLPMNIIR 879

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            ++  A+ TFK+     SD+HP  V+  V +L +RL +V GED +S+EAQ+NAT+     L
Sbjct: 880  ILNQARTTFKIPTGATSDLHPSYVIPKVKQLLDRLVIVRGEDKISLEAQENATMLIKAQL 939

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            RS  A KR++ E+ L R AF+ VIG IE+RF+++  APGEM+G +AAQS
Sbjct: 940  RSRLAFKRLVMENSLNRLAFDHVIGAIETRFIKATAAPGEMVGVLAAQS 988


>gi|226876164|gb|ACO89403.1| RNA polymerase II largest subunit, partial [Capronia sp. WUC 315]
          Length = 983

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1008 (50%), Positives = 663/1008 (65%), Gaps = 45/1008 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GFM  V  I+ +VC NC KI A  D    + AL +R+ K R   +    K
Sbjct: 1    IKLATPVYHYGFMTKVKKILETVCHNCGKIKA-VDSEDLRHALSLRDRKRRFDAVWRLSK 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKK----NKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDD 198
             K  CE       P +D ++PLK       GGCG  QP++  +G+++ A +K  RK  DD
Sbjct: 60   PKLVCEAD-----PPEDPDQPLKGPAQPKHGGCGNAQPEIRRQGLQLWATWKP-RKGEDD 113

Query: 199  QEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV-- 256
            ++  PE    K+ +  +  L   + ++DE  +L+GL+  YARPDWMIL  LP+PPPPV  
Sbjct: 114  EDTTPE----KKRIFPQDALNTFRTLTDETLELMGLSLDYARPDWMILSALPVPPPPVRP 169

Query: 257  -----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
                       R  DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY D
Sbjct: 170  SISVDGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMD 229

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            NE+ G  RA  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++G
Sbjct: 230  NEIAGLDRAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVG 289

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP SIA NLTYPETVTP+N+++LK LV  GP+  PG   A+Y+IRD G+R+DLR+ K++ 
Sbjct: 290  VPRSIARNLTYPETVTPFNLDKLKRLVANGPNEHPG---ARYVIRDTGERIDLRHHKRAG 346

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
            +  L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNADF
Sbjct: 347  EMTLQYGWKVERHIQDGDVILFNRQPXXXXXX----RVRVMPYSTFRLNLSVTTPYNADF 402

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS E+RAE+  L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ 
Sbjct: 403  DGDEMNLHVPQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLT 462

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGI 605
            ++  MNI++W  D+DG +PQP ++KPRP WTGKQ+ ++I+P  +NL R  A   D     
Sbjct: 463  REHVMNIMLWVPDWDGVIPQPAVIKPRPRWTGKQMISMILPAALNLERLDAKGEDP---Y 519

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
            + A DT + + +G L+ G   KK +GTS G +IH I+ E G  AA  F    Q +VNYWL
Sbjct: 520  VPANDTGLMVLEGNLMFGLFSKKFVGTSAGGIIHTIFNEFGHQAAMSFFNGAQTVVNYWL 579

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGDT+ D +T+  I   +   K  V  L  +A  + LEP PG    ++FE+K
Sbjct: 580  LHNGFSIGIGDTVPDPETVLKIQSAVDTKKAEVDELTIRAYKEDLEPSPGMNARQTFESK 639

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            V   LN ARD+AG++ + SL + NN   M  AGSKGS INI+QMTA VGQQ VEGKRIPF
Sbjct: 640  VMNSLNQARDQAGTATEDSLKDLNNGITMARAGSKGSTINIAQMTAIVGQQAVEGKRIPF 699

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF  RTLPHF KDDY   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 700  GFKYRTLPHFAKDDYSAPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYI 759

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRLVKA+E++ VKYD TVR+S G+V+QF+YGEDG+D   IE+Q +D + M    F+  F
Sbjct: 760  QRRLVKALEEVTVKYDSTVRDSRGNVVQFIYGEDGLDGAHIENQKVDIITMSDKAFNNRF 819

Query: 906  RFEM---DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSS 962
              ++   D   W    +LQ    +L+   EL+++FD E++ L   R     ++    + S
Sbjct: 820  AVDIMSGDVSLWR-GKLLQAR--ELQGDTELQEMFDEELETLRECR-DFLRKMGKGIEDS 875

Query: 963  WPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKN 1022
              LP+N+ R+I  AQK FK+     +D+ P   + +V+ L +RL VV G+DP+S EAQ N
Sbjct: 876  MQLPLNIGRIIDQAQKNFKIRRGDKTDLDPRHALSSVNNLLDRLIVVRGDDPISQEAQSN 935

Query: 1023 ATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            ATL     LRS  A KR++ EH L R AF+ +IG +ESRF+ +   PG
Sbjct: 936  ATLLLKAQLRSRLAYKRLVLEHGLNRLAFDNIIGGVESRFIAAAANPG 983


>gi|226876245|gb|ACO89443.1| RNA polymerase II largest subunit, partial [Arachniotus littoralis]
          Length = 992

 Score =  952 bits (2462), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/1009 (49%), Positives = 669/1009 (66%), Gaps = 42/1009 (4%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGG-- 150
            GF+  +  ++ +VC NC KI A+  D K+  AL+ R+PK R   I    K+   CE    
Sbjct: 1    GFLTKIKKLLETVCHNCGKIKANTSDQKYLDALRFRDPKRRFDAIWRLSKDVLICEADPT 60

Query: 151  DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
            D+ +  G++G     K  GGCG  QP +  EG+ ++  +K  + ++   E +      K+
Sbjct: 61   DDDEPFGKEGASKPSKGHGGCGNSQPTIRKEGLTLVGTWKPNKNRDIMDEDMDMQQPEKR 120

Query: 211  TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV-------------R 257
            T+T +  L + + +S++D +++GL+  YARP+WMI+ VLP+PPPPV             R
Sbjct: 121  TITPQMALNIFRNVSEDDVRIIGLSNDYARPEWMIITVLPVPPPPVRPSVLVGGSGSGQR 180

Query: 258  PSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQR 317
              DDLT++LA I+R N N+   E  G+P H++ EF  LLQ+H+ATY DN++ GQP+A Q+
Sbjct: 181  GEDDLTYKLAEIVRANGNVLECESAGSPEHVVREFEALLQYHVATYMDNDIAGQPQAMQK 240

Query: 318  SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYP 377
            S RP+K++  RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP +IA  LTYP
Sbjct: 241  SNRPVKALRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKTIAQTLTYP 300

Query: 378  ETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH-LELGYKVE 436
            E VTPYNI +L +LV+ GP   PG   A+Y+IR  G+R+DLR+ K     + L+ G+KVE
Sbjct: 301  EVVTPYNINKLAQLVDNGPDIHPG---ARYVIRSTGERIDLRHHKGGGGRNFLQWGWKVE 357

Query: 437  RHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 496
            RHL DGD                   +++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQ
Sbjct: 358  RHLMDGD----XXXXXXXXXXXXXXXVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQ 413

Query: 497  SFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW 556
            S E RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++  MNIL+W 
Sbjct: 414  SEEARAELNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDEFLTREQVMNILLWV 473

Query: 557  EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA-----GDT 611
             ++DG VPQP ILKPRP WTGKQ+ ++++P  +NL R      D D+  L+       D 
Sbjct: 474  PEWDGVVPQPAILKPRPRWTGKQMISMVLPSGLNLLRV-----DKDRAPLSEKFSPLADG 528

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
             + +  GEL+ G   KKT+G + G +IH I+ E GP+    F    Q +VNYWLL N FS
Sbjct: 529  GLLVHGGELMYGMFSKKTVGATGGGIIHTIYNEYGPEVCMNFFNGAQTVVNYWLLHNGFS 588

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDTI D  T+E I + +   K  V ++ + A D +LE  PG  + E+FE+KV++ LN
Sbjct: 589  IGIGDTIPDNATIEKIENAVRIRKEEVDSITESATDNTLEALPGMNVRETFESKVSRALN 648

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARDEAG+  +KSL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RT
Sbjct: 649  NARDEAGTETEKSLKDLNNAVQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRT 708

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHFTKDDY PESRGFV NSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQR+LVK
Sbjct: 709  LPHFTKDDYSPESRGFVHNSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVK 768

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MD 910
            A+E++MVKYDGTVRNSLGD+IQFLYGEDG+D   IE+Q +D ++    +F   +R + MD
Sbjct: 769  ALEEVMVKYDGTVRNSLGDIIQFLYGEDGLDGAHIENQRVDVIRCSDEQFRNRYRIDLMD 828

Query: 911  EENWNPNYMLQ---EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPV 967
             E+   + +L+   E   D++  K L    D E ++L  DR  L T  A   +    LP+
Sbjct: 829  PESTLSSDILEQAGEIAGDMEVQKHL----DEEWEQLLKDRAFLRTA-AKEDEEMMQLPI 883

Query: 968  NLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFF 1027
            N++R++ +A+  F++     SD+HP EV+  V +L +RL VV G+DP+S EAQ+NATL F
Sbjct: 884  NVQRILESAKTAFRIRDGTISDLHPAEVIPQVRELLDRLLVVRGDDPISHEAQENATLLF 943

Query: 1028 NILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
               LRS  A +R++ E+ L + AF+ V+G IE+RF  +  +PG M+G +
Sbjct: 944  KAQLRSRLAFRRLVAEYSLNKLAFQHVLGAIETRFAXAXASPGXMVGVL 992


>gi|397135862|gb|AFO11426.1| RNA polymerase I, partial [Dekkera bruxellensis]
          Length = 793

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/820 (57%), Positives = 599/820 (73%), Gaps = 39/820 (4%)

Query: 254  PPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
            PPV PS          DDLT++LA I++ N N+++ + +G+P H+I+EF  LLQ+H+ATY
Sbjct: 1    PPVSPSVAFTDSKRSEDDLTYKLADILKANINVQKFQMDGSPQHVINEFEALLQYHVATY 60

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++ GQP+A Q+SGRPIKSI +RL+ KEGR+RGNLMGKRVD SAR+VI+ DP I +DQ
Sbjct: 61   MDNDIAGQPQALQKSGRPIKSIRARLRGKEGRLRGNLMGKRVDSSARSVISGDPNIELDQ 120

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP ++A  LTYPE VTPYNI +L +LV  GP+  PG   A+Y+IRD G+R+DLR+ K+
Sbjct: 121  VGVPRTVAQTLTYPEVVTPYNIGQLTQLVRNGPNQYPG---ARYVIRDSGERIDLRFNKR 177

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            + D  L+ G+KVERHL DGD VLFNRQPSLHKMS+M H++++MP+STFR+NLSVT+PYNA
Sbjct: 178  AGDIQLQYGWKVERHLMDGDPVLFNRQPSLHKMSMMCHKVRVMPFSTFRINLSVTTPYNA 237

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMNMHVPQS+ET+AE+ E+  VP+ IVSPQSN+PVMGIVQDTL+G RK+T RD+F
Sbjct: 238  DFDGDEMNMHVPQSYETKAELEEICAVPRQIVSPQSNKPVMGIVQDTLVGVRKMTLRDSF 297

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
            +  D  MN+  W   +DG VPQP +LKPRP WTGKQVF+L IP+ I L R        D 
Sbjct: 298  VAYDQLMNMCFWNPGWDGVVPQPAVLKPRPXWTGKQVFSLTIPRGIFLQRV-------DG 350

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
              L+  D+ + I  G+++ G + K T+GTS+G LIH    E GP    + +G  Q + NY
Sbjct: 351  PPLSPRDSGMLIRNGDVMFGVVNKATVGTSSGGLIHTCMREKGPRECARMIGSIQKVCNY 410

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            WLL N FSIGIGD IAD  TM+TI  TI+ AK+ V+ +I  AQ   L+PEPG T+ ESFE
Sbjct: 411  WLLHNGFSIGIGDAIADPDTMKTITKTIATAKDQVQGVIADAQANRLQPEPGMTVRESFE 470

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
             KV+++LN ARD AG SA+ SL +SNN+K MVTAGSKGS+INISQM+ACVGQQ VEG+RI
Sbjct: 471  QKVSKILNEARDAAGKSAETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGRRI 530

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
             FGF DR+LPHFTKDDY  ES+GFVENSYLRGLTPQE FFHAM GREGLIDTAVKT+ETG
Sbjct: 531  YFGFADRSLPHFTKDDYSAESKGFVENSYLRGLTPQELFFHAMAGREGLIDTAVKTAETG 590

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRRLVKA+EDIMV+YDGT RNSLGDVIQFLYGEDG+D+  +E QT+D++    + F++
Sbjct: 591  YIQRRLVKALEDIMVQYDGTTRNSLGDVIQFLYGEDGLDATQVEKQTIDTIGGSTAAFER 650

Query: 904  AFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW 963
                               Y+D+ +    ++   DAE  +L ADR  L   +  +GD +W
Sbjct: 651  ------------------RYLDNSEVDDAVQRARDAEYSQLCADRAFLRKVVFPTGDDAW 692

Query: 964  PLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL-QERLKVVPGEDPLSVEAQKN 1022
            PLPVN++R++ NAQ+ F VD  R SD+   EVV  V  L  ++L VV G      +AQ+N
Sbjct: 693  PLPVNIRRIVQNAQQIFHVDRARSSDLTVPEVVRRVAVLCHDKLPVVRGSGGCLDQAQQN 752

Query: 1023 ATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRF 1062
            AT  F  L+RS  ASKRVL E RL R++F+WV+G +E + 
Sbjct: 753  ATYLFQCLVRSRLASKRVLHELRLNRDSFDWVLGMVEQQL 792


>gi|226876166|gb|ACO89404.1| RNA polymerase II largest subunit, partial [Ceramothyrium
            carniolicum]
          Length = 992

 Score =  952 bits (2460), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1022 (49%), Positives = 668/1022 (65%), Gaps = 54/1022 (5%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GFM  V  I+ +VC NC KI A  D+ + +QAL IR+ K R   +    K
Sbjct: 1    IKLATPVYHYGFMAKVKKILETVCHNCGKIKA-LDNEELRQALAIRDRKRRFDAVWRLSK 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKK---NKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
             +  CE       P +D E P        GGCG  QP +   G+++ A +KA RK  DD+
Sbjct: 60   PRLICEAD-----PPEDEEVPKGATVVRHGGCGNAQPDIRRTGLQLWASWKA-RKGEDDE 113

Query: 200  EQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV--- 256
            +  PE    ++ +  +  L   K ++D+  + +GLN  YARP+WMILQ LP+PPPPV   
Sbjct: 114  DVTPE----RKRIFPQDTLDTFKNLTDDTLEKMGLNLDYARPEWMILQALPVPPPPVRPS 169

Query: 257  ----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
                      R  DDLT +L+ IIR N+ + R E +G P HI  +   LLQ+HIATY DN
Sbjct: 170  ISVDGSGQGQRGEDDLTFKLSDIIRANQAVLRTEVDGTPDHIKIDLWDLLQYHIATYMDN 229

Query: 307  ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
            ++ G  +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GV
Sbjct: 230  DIAGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGV 289

Query: 367  PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
            P SIA  LTYPETVTP+NIERLK  V  GP   PG   A+Y+IR  G+R+DLR+ K++ +
Sbjct: 290  PRSIARTLTYPETVTPFNIERLKRFVANGPTEHPG---ARYVIRSTGERVDLRHHKRAGE 346

Query: 427  HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 486
             +LE G+KVERHL  GD +LFNRQP          R+++MPYSTFRLNLSVTSPYNADFD
Sbjct: 347  MNLEYGWKVERHLMTGDVILFNRQPXXXXXX----RVRVMPYSTFRLNLSVTSPYNADFD 402

Query: 487  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
            GDEMN+HVPQS E++AE+ +L +VP+ IVSPQ N P+MGIVQDTL G  KI +RD F+ K
Sbjct: 403  GDEMNLHVPQSEESKAELSQLCLVPRNIVSPQRNSPLMGIVQDTLCGVYKICRRDIFLNK 462

Query: 547  DVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAA-----WHADN 601
            +  MNI++W  D+DG +PQP ILKPRP WTGKQ+ ++++  Q+NL R        W+ + 
Sbjct: 463  EAVMNIMLWVPDWDGVLPQPAILKPRPRWTGKQMISMVLHPQLNLERPEGKVKDPWNPEA 522

Query: 602  DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            D+G L        I +GEL+ G L KK +G   G +IH ++ E G + A  F    Q +V
Sbjct: 523  DQGHL--------ILEGELMFGILNKKIVGAGAGGVIHTVFNEFGFEQAMSFFNGAQCVV 574

Query: 662  NYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMES 721
            NYWLL + FSIGIGDT+ D  T+  I   + + K  V+N+ K A +  LEP PG  + ++
Sbjct: 575  NYWLLHHGFSIGIGDTVPDPDTVIAIQSAVDEQKKEVENITKIAYNNELEPSPGMNVRQT 634

Query: 722  FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
            FE++V   LN AR+ AGS+ + SL + NN   M  +GSKGS INI+QMTA VGQQ VEGK
Sbjct: 635  FESRVMAALNKARETAGSATEDSLKDLNNAIQMARSGSKGSAINIAQMTAIVGQQAVEGK 694

Query: 782  RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
            RI FGF  R+LPHF KDDY   SRGFVENSYL+GLTP EFFFHAM GREGLIDTAVKT+E
Sbjct: 695  RINFGFKYRSLPHFAKDDYSAPSRGFVENSYLKGLTPTEFFFHAMAGREGLIDTAVKTAE 754

Query: 842  TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
            TGYIQRRLVKA+E++ VKYDGT+R+S G+++QF+YGEDG+D   IE+Q +D L       
Sbjct: 755  TGYIQRRLVKALEEVTVKYDGTIRDSRGNIVQFIYGEDGLDGAHIENQRVDILAASDESM 814

Query: 902  DKAFRFEM---DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS 958
             K F+ ++   D   W    +      +L+   +L+ +FD E + L + R  L T +   
Sbjct: 815  RKRFQVDIMSGDVSMWKGRLIQAR---ELQGDADLQQMFDDEWEALTSARKFLRT-MGKG 870

Query: 959  GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVE 1018
             D    LP+N+ R+I  AQK FK+     +D+ P  V+ +V+ L ER+ VV GED +S E
Sbjct: 871  ADEMMQLPMNIARIIDQAQKGFKIRRGDRTDLDPRHVINSVNGLLERIIVVRGEDAISKE 930

Query: 1019 AQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAA 1078
            AQ NATL     LRS  A KR++ EH L R AF+ +IG +ESRFL +   PGEM+G +AA
Sbjct: 931  AQHNATLLIKAQLRSKLAFKRLVMEHSLNRLAFDNIIGGVESRFLAAAANPGEMVGVLAA 990

Query: 1079 QS 1080
            QS
Sbjct: 991  QS 992


>gi|341858938|gb|AEK97379.1| ribosomal polymerase II largest subunit [Beauveria asiatica]
          Length = 954

 Score =  951 bits (2459), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/979 (50%), Positives = 650/979 (66%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPAVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEIT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDELDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAPGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFESQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +LA +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLARDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +++V G+DP+SVEA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPFDVITTVQNLLANMQIVRGKDPISVEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|111278793|gb|ABH09094.1| RNA polymerase II largest subunit [Capronia pilosella]
          Length = 1001

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1016 (49%), Positives = 665/1016 (65%), Gaps = 33/1016 (3%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE-DDHKFKQALKIRNPKNRLKKILDAC 141
            ++LA P++H GFM  V  I+ +VC NC KI A E    + K AL +R+ K R   +    
Sbjct: 2    IKLATPVYHYGFMTKVKKILETVCHNCGKIKALEVSSEELKHALSLRDRKRRFDAVWRLS 61

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            K +  CE     D   Q  + P     GGCG  QP +   G+++ A +K  RK  DD++ 
Sbjct: 62   KPRAVCEADPPDDPD-QPMKGPAPPKHGGCGNAQPDIRRTGLQLWATWKP-RKGEDDEDT 119

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV----- 256
             P+    K+ +  +  L   + ++DE  +++GL+  YARP+WMIL  LP+PPPPV     
Sbjct: 120  TPD----KKRIFPQDALNTFRTLTDETLEMMGLSLDYARPEWMILSALPVPPPPVRPSIS 175

Query: 257  --------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNEL 308
                    R  DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DNE+
Sbjct: 176  VDGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNEI 235

Query: 309  PGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
             G  +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP 
Sbjct: 236  AGLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPR 295

Query: 369  SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
            SIA  LT+PETVT +N+E+LK LV+ GP+  PG   A+Y+IRD G+R+DLR+ K  S+  
Sbjct: 296  SIARTLTFPETVTRFNVEKLKVLVKNGPNVHPG---ARYVIRDTGERIDLRHHKNLSEMT 352

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            L  G+KVERH+ DGD +LFNRQPSL        R+++MPYSTFRLNLSVT+PYNADFDGD
Sbjct: 353  LGWGWKVERHIQDGDVILFNRQPSLXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGD 412

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMN+HVPQS E+RAE+  L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ +  
Sbjct: 413  EMNLHVPQSQESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTRGQ 472

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
             MNI++W  D++G +PQP I+KPRP WTGKQ+ ++++P  +NL R  A   D     +  
Sbjct: 473  VMNIMLWVPDWNGVIPQPAIIKPRPRWTGKQMISMVLPNALNLERLDAKGEDP---YVPT 529

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
             DT + + +G L+ G   KK +GTS G +IH I+ E G DAA  F    Q +VNYWLL  
Sbjct: 530  HDTGLMVLEGNLMFGLFSKKFVGTSAGGIIHTIFNEFGHDAAMAFFNGAQTVVNYWLLHT 589

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDT+ D  T+  I   +   K  V+ L   A ++ LEP PG  + ++FE+KV  
Sbjct: 590  GFSIGIGDTVPDPDTVLKIQSAVDIKKEEVRELTVLAYNEELEPSPGMNVRQTFESKVMN 649

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
             LN ARD+AGS+ + SL + NN   M  AGSKGS INI+QMTA VGQQ VEGKRIPFGF 
Sbjct: 650  SLNQARDQAGSATEDSLKDLNNAIQMARAGSKGSTINIAQMTAIVGQQAVEGKRIPFGFK 709

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             RTLPHF KDDY   SRGFVENSYLRGLTP EFFFHAM GREGLID AVKT+ETGYIQRR
Sbjct: 710  YRTLPHFAKDDYSAPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDXAVKTAETGYIQRR 769

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IE+Q +D + M    F+  F  +
Sbjct: 770  LVKALEEVTVKYDSTVRDSRGNIVQFIYGEDGLDGAHIENQKVDIITMSDKAFNNRFAVD 829

Query: 909  M---DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL 965
            +   D   W    +LQ    +L+   EL+++FD E++ L   R     ++    + S  L
Sbjct: 830  VMSGDVSMWRGK-LLQAR--ELQGDTELQEMFDEELEALRESR-DFLRKMGKGTEDSMQL 885

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
            P+N+ R+I  +QK FK+     +D+ P   + AV +L +RL +V GED +S EAQ NATL
Sbjct: 886  PLNIGRIIDQSQKNFKIRRGDKTDLDPRHALTAVKQLLDRLIIVRGEDAISREAQDNATL 945

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
                 LRS  + KR++ EH L R AF+ +IG IESRF+ +  APGEM+G +AAQSI
Sbjct: 946  LLKAQLRSRLSYKRLVLEHGLNRLAFDNIIGAIESRFIAAQAAPGEMVGVLAAQSI 1001


>gi|341859016|gb|AEK97418.1| ribosomal polymerase II largest subunit [Cordyceps cicadae]
          Length = 954

 Score =  951 bits (2458), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/979 (50%), Positives = 650/979 (66%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A++ R+PK R K++   CK K KCE  D  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVAAIRTRDPKLRFKRVWAVCKKKRKCENEDRQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGAKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNMGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
              +R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K+   N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGAYKLCRRDTFIDKEFVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPKHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK +G ++G +IH+ + E+GP+ A  FL   Q +V YWLL    
Sbjct: 524  ----IQSGELMYGLLKKKNVGAASGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGH 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D +T+E +   I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKQTIEKVQAHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S QKSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTQKSLKDSNNAVTMAESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F++ +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSDAAFERQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR  +  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALLADRRSV-RDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +K+V G DP+S+EA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITTVQNLLANMKIVRGNDPISLEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|341859014|gb|AEK97417.1| ribosomal polymerase II largest subunit [Beauveria malawiensis]
          Length = 954

 Score =  951 bits (2457), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/979 (50%), Positives = 650/979 (66%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+ IR+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHIRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVIEGHGGCGNMQPQVRQAALQLKAAFEIT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFENQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+ AV  L   +++V G DP+S+EA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITAVQTLLANMQIVRGTDPISIEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|149794935|gb|ABR31763.1| RNA polymerase II largest subunit [Capronia munkii]
          Length = 991

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1017 (49%), Positives = 663/1017 (65%), Gaps = 51/1017 (5%)

Query: 85   LAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNK 144
            LA P++H GFM  V  I+ +VC NC KI A  D  +F++A+ +R+ K R   +    K +
Sbjct: 1    LATPVYHYGFMSKVKKILETVCHNCGKIKA-LDSEEFRRAISLRDRKRRFDAVWRLSKPR 59

Query: 145  TKCEGGDEIDVPGQDGEEPLKK----NKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
              CE       P +D ++PLK       GGCG  QP +   G+++ A +KA  K  D+++
Sbjct: 60   NICEAD-----PPEDPDQPLKGPPQPKHGGCGNMQPDIRRTGLQLWATWKAS-KAEDEED 113

Query: 201  QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV---- 256
              P+    K+ +  +  L   + ++DE  +++GL+  YARP+WMIL  LP+PPPPV    
Sbjct: 114  TAPD----KKRIFPQDALNTFRTLTDETLEMMGLSLDYARPEWMILSALPVPPPPVRPSI 169

Query: 257  ---------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNE 307
                     R  DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DN+
Sbjct: 170  SVDGSGQGSRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDND 229

Query: 308  LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 367
            + G  RA  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP
Sbjct: 230  IAGLERAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVP 289

Query: 368  WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 427
             SIA  LTYPETVTP+N++RLK LV  GP   PG   A+Y+IRD G+R+DLR+ K++ + 
Sbjct: 290  RSIARTLTYPETVTPFNLDRLKRLVANGPTELPG---ARYVIRDTGERIDLRHHKRAGEM 346

Query: 428  HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDG 487
             L+ G+KVERH+ DGD +LFNRQP              MPYSTFR NLSVT+PYN DFDG
Sbjct: 347  TLQYGWKVERHIQDGDVILFNRQPXXXXXXXXXXXXXXMPYSTFRXNLSVTTPYNXDFDG 406

Query: 488  DEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
            DEMN+HVPQS E+RAE+  L MVP  IVSPQ N P+MGIVQDTL G  K+ +RD F+ ++
Sbjct: 407  DEMNLHVPQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKVCRRDVFLTRE 466

Query: 548  VFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD-----ND 602
              MNI++W  D+DG +PQP I+KPRP WTGKQ+ ++++P  +NL R  A   D     ND
Sbjct: 467  QVMNIMLWVPDWDGVIPQPAIIKPRPRWTGKQMISMVLPHALNLERLDAKGEDPYVPAND 526

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
             G+L        + +G L+ G   KK +GTS+G +IH I+ E G +AA  F    Q +VN
Sbjct: 527  TGLL--------VLEGHLMFGLFSKKFVGTSSGGIIHTIFNEFGHEAAMAFFNGAQHVVN 578

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            +WLL N FSIGIGDT+ D  T++ I D +   K  V+ +  +A  + LEP PG  + ++F
Sbjct: 579  FWLLHNGFSIGIGDTVPDPATVQKIQDVVDAKKTEVEEITIRAYKEDLEPSPGMNVRQTF 638

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV   LN ARD+AG+  + SL + NN   M  AGSKGS INI+QMTA VGQQ VEGKR
Sbjct: 639  ESKVMNALNQARDQAGAVTENSLKDLNNAITMARAGSKGSTINIAQMTAIVGQQAVEGKR 698

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 699  IPFGFKYRTLPHFAKDDYSAPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 758

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IE+Q +D + M    F+
Sbjct: 759  GYIQRRLVKALEEVTVKYDSTVRDSRGNIVQFIYGEDGLDGAHIENQKVDIITMSDKAFN 818

Query: 903  KAFRFEM---DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSG 959
              F  ++   D   W    +LQ    +++   EL+++FD E+  L  D  +   ++    
Sbjct: 819  NRFAVDIMSGDTSMWR-GKLLQAR--EIQGDTELQEMFDEELDALR-DSREFLRKMGKGT 874

Query: 960  DSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEA 1019
            + S  LP+N+ R+I  AQK FK+     +D+ P   + +V +L +RL VV G+DP+S EA
Sbjct: 875  EDSMQLPLNIARIIDQAQKNFKIRRGDKTDLDPRHALVSVKQLLDRLVVVRGDDPISQEA 934

Query: 1020 QKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
            Q NATL     LRS  A KR++ EH L R AF+ VIG +ESRF+ +   PGEM+G +
Sbjct: 935  QSNATLLLKAQLRSRLAYKRLVLEHGLNRLAFDNVIGAVESRFIAAHANPGEMVGVL 991


>gi|195566227|ref|XP_002105705.1| GD15986 [Drosophila simulans]
 gi|194204074|gb|EDX17650.1| GD15986 [Drosophila simulans]
          Length = 1150

 Score =  950 bits (2456), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/800 (57%), Positives = 600/800 (75%), Gaps = 32/800 (4%)

Query: 8   SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
           S A + +V+ VQFGILSPDEIR+MSV +  ++  ET E G+PK GGL DPR G IDR  +
Sbjct: 7   SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66

Query: 66  CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
           C+TC  NM ECPGHFGH++LAKP+FHIGF+   + I+R VCF CSK+L    + K K+  
Sbjct: 67  CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126

Query: 125 LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIE 181
           +K R  P+ RL  + D CK KT CEGG+++D+  ++ + +P KK   GGCG  QP +   
Sbjct: 127 MKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRT 186

Query: 182 GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
           G+ + AE+K Q   N+D +      E+K  ++AERV  +LK I+DE+C +LG++PKYARP
Sbjct: 187 GLDLTAEWKHQ---NEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYARP 237

Query: 242 DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
           DWMI+ VLP+PP  VRP+          DDLTH+L+ II+ N  LR+ E +GA AH+I E
Sbjct: 238 DWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQE 297

Query: 292 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
             ++LQFH+AT  DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 298 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357

Query: 352 VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
           VITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV  G    PG   AKYI+RD
Sbjct: 358 VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRD 414

Query: 412 DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
           +G+R+DLR+  KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 415 NGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474

Query: 472 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
           R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 475 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTL 534

Query: 532 LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
              RK+TKRD FI ++  MN+LM+   +D K+PQP ILKPRPLWTGKQ+F+LIIP  +N+
Sbjct: 535 TAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNM 594

Query: 592 FRTAAWHAD-NDKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
            RT + H D  D+G    ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G 
Sbjct: 595 IRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGH 654

Query: 648 DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
           D A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK++V N+I++A +
Sbjct: 655 DIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHN 714

Query: 708 KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
             LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 715 MELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 774

Query: 768 QMTACVGQQNVEGKRIPFGF 787
           Q+ ACVGQQNVEGKRIP+GF
Sbjct: 775 QVIACVGQQNVEGKRIPYGF 794


>gi|157741480|gb|ABV69445.1| RNA polymerase II largest subunit, partial [Bagliettoa parmigera]
          Length = 988

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1009 (49%), Positives = 667/1009 (66%), Gaps = 43/1009 (4%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGG--- 150
            F+  V  I+ +VC NC KI A  D  + + AL +R+ K R + I    + +  C+     
Sbjct: 1    FLGKVKKILETVCHNCGKIKA-LDSEELRYALSVRDRKKRFELIWRLSQKQNVCQADGPE 59

Query: 151  DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
            DE D   +D    +K   GGCG  QP +   G+++ A+YK  RK +D++E +PE    K 
Sbjct: 60   DEDDPNARDKISKIKH--GGCGNAQPAIRKTGLELWAQYKP-RKGDDEEEAVPE----KS 112

Query: 211  TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV-------------R 257
             +   + L V + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV             R
Sbjct: 113  QIWPAQTLQVFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPVRPSISVDGSGQGQR 172

Query: 258  PSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQR 317
              DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN++    +A  +
Sbjct: 173  GEDDLTFKLGDIIRANQNLLRINAEGAPDHIAKELQALLQYHVATYMDNDIANLDKAQHK 232

Query: 318  SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYP 377
            SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYP
Sbjct: 233  SGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAKTLTYP 292

Query: 378  ETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVER 437
            ETVT +N+ +LK+LV  GP+  PG   A++IIR+  +R+DLRY K +S+  L  G+KVER
Sbjct: 293  ETVTKWNMSKLKQLVVNGPNNHPG---ARFIIREHNERIDLRYHKNTSEIVLRTGWKVER 349

Query: 438  HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
            H+ DGD++LFNRQP          R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS
Sbjct: 350  HIKDGDYILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQS 402

Query: 498  FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 557
             E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++  MNI++W  
Sbjct: 403  EESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIMLWVP 462

Query: 558  DFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKGILTAGDTLVRIE 616
            D+DG +PQP   KPRP WTGKQ+ ++++P  +NL R     +    +     GD  + + 
Sbjct: 463  DWDGVIPQPATFKPRPRWTGKQMISMVLPSALNLVRIDGKPSQPPGERFAPVGDGGLFVS 522

Query: 617  KGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD 676
             G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VNYWLL N FSIGIGD
Sbjct: 523  DGQLMFGLFNKKSVGTGSNGIIHTIYNEFGHEVAMAFFNGAQTVVNYWLLHNGFSIGIGD 582

Query: 677  TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDE 736
            T+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+FE+KV+  LN ARDE
Sbjct: 583  TVPDVGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALNGARDE 642

Query: 737  AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFT 796
            AG++ + SL + NN   M  AGSKGS INISQMTA VG Q+VEGKRIPFGF  RTLPHF 
Sbjct: 643  AGTATENSLKDINNAITMARAGSKGSTINISQMTAIVGPQSVEGKRIPFGFKYRTLPHFA 702

Query: 797  KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDI 856
            KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E++
Sbjct: 703  KDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEV 762

Query: 857  MVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN--- 913
             VKYD TVR+S G+++QF+YGEDG+D   IE Q +D + M  S F+K FR ++ E     
Sbjct: 763  TVKYDSTVRDSRGNIVQFIYGEDGLDGAHIEHQRVDVIAMSDSAFEKQFRIDLMEPKKLV 822

Query: 914  WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIATSGDSSWPLPVNLKR 971
            W       E   ++    +++ +FD E ++L  DR  L    + ATS D   PLP+N+ R
Sbjct: 823  WRNRL---EQASEIHGDVDVQKLFDEEYEQLLEDRKFLRHMKKAATSSDEMMPLPMNIIR 879

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            ++  A+ TFK+     SD+HP  V+  V +L +RL +V GED +S+EAQ+NAT+     L
Sbjct: 880  ILNQARTTFKIPTGATSDLHPSYVIPKVKQLLDRLVIVRGEDKISLEAQENATMLIKAQL 939

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            RS  A KR++ E+ L R AF+ VIG IE+RF+++  APGEM+G +AAQS
Sbjct: 940  RSRLAFKRLVMENSLNRLAFDHVIGAIETRFIKATAAPGEMVGVLAAQS 988


>gi|226876225|gb|ACO89433.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
            TRN488]
          Length = 985

 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1015 (48%), Positives = 649/1015 (63%), Gaps = 57/1015 (5%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GFM  V  I+ +VC NC KI A  D  + + ALK R+PK R   I    K K  CE    
Sbjct: 1    GFMTKVKKILETVCHNCGKIKA-TDSEELRVALKSRDPKRRFDAIWKLSKPKLICEAD-- 57

Query: 153  IDVPGQDGEE------PLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPV 206
               P +D +       P     GGCG  QPK+   G+++ A + A RK  D+++  PE  
Sbjct: 58   ---PPEDADASFNPKGPQLPKHGGCGNAQPKIRRTGLQLWASWDA-RKGEDEEDTTPE-- 111

Query: 207  ERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS------- 259
              K+ +  +  L   + ++DE  + +GLN  +A P+WMIL  LP+PPP VRPS       
Sbjct: 112  --KKRIFPQDALNTFRTLTDETIETMGLNANFAHPEWMILSALPVPPPAVRPSISVDGSG 169

Query: 260  ------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
                  DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DN++ G  +
Sbjct: 170  QGSRGEDDLTFKLGDIIRANQAVLRTEVDGTPEHIKVDLCDLLQYHIATYMDNDIAGLDK 229

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  
Sbjct: 230  AQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 289

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTP+NI++L  LV  GP   PG   A+Y+IRD G+R+DLR+ K++ +  L+ G+
Sbjct: 290  LTYPETVTPFNIQKLARLVANGPTEHPG---ARYVIRDTGERIDLRHHKRAGEMTLQYGW 346

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERH+ DGD                  R+++MPYSTFRLNLSVT+PYNADFDGDEMN+H
Sbjct: 347  KVERHIQDGDVX----XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLH 402

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS E+RAE+  L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++  MNI+
Sbjct: 403  VPQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLAGIYKICRRDVFLNREQVMNIM 462

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR-----TAAWHADNDKGILTA 608
            +W  D+DG +P P I KPRP WTGKQ+ ++++PK +NL R        W    D G+L  
Sbjct: 463  LWVPDWDGVIPNPAIFKPRPRWTGKQMISMVLPKNLNLERLDGKGIDGWFPTVDNGLL-- 520

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
                  +  G L+ G   KK +GTS+G ++H I+ E G +AA  F    Q ++NYWLL N
Sbjct: 521  ------VLDGNLMFGLFSKKFVGTSSGGIVHTIFNEFGHEAAMGFFNGAQTVINYWLLHN 574

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDT+ DA T++ I D ++  KN V  + K A+ + LE  PG  + E+FE+KV  
Sbjct: 575  GFSIGIGDTVPDAVTVQKIQDEVTGRKNEVAKITKIAEMEELEALPGMNVRETFESKVQA 634

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
             LN ARD+AG++ ++SL + NN   M  AGSKGS INI+QMTA VGQQ VEGKRIPFGF 
Sbjct: 635  ELNGARDKAGTATEQSLKDLNNAIQMARAGSKGSTINIAQMTAIVGQQAVEGKRIPFGFN 694

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             R+LPHF KDDY P SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRR
Sbjct: 695  YRSLPHFAKDDYSPPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRR 754

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKA+E+I VKYDGTVR+S G+V QF+YGEDG+D   IE+Q +D++ +    F   F  +
Sbjct: 755  LVKALEEITVKYDGTVRDSKGNVTQFIYGEDGLDGAHIENQKVDTITVSDKAFANRFLVD 814

Query: 909  M---DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL 965
            +   D   W   +   + I       +L+  FD E ++L  DR Q    +    + S  L
Sbjct: 815  LMTGDTSTWRGRFTKAKQI---LGNSDLQQHFDDEFEQLTKDR-QFLRSMGKGTEESMQL 870

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
            P+N+ R+I  AQK F +     +D+ P   + AV +L +RL VV GED +SVEAQ NAT+
Sbjct: 871  PLNVGRIIDQAQKKFNIRSGDQTDLDPEYAIPAVQRLMDRLIVVRGEDSISVEAQHNATI 930

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
                 LRS  A +R++ +H L + AF+ V+  IE RF+ +   PGEM+G +AAQS
Sbjct: 931  LLKAQLRSRLAFRRLVVDHSLNKLAFDNVLNNIEQRFIAAHANPGEMVGVLAAQS 985


>gi|31127034|gb|AAF26651.2|AF139001_1 RNA polymerase II largest subunit [Polyxenus fasciculatus]
          Length = 751

 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/755 (61%), Positives = 571/755 (75%), Gaps = 8/755 (1%)

Query: 336  IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 395
            IRGNLMGKRVDFSARTVITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ELV  G
Sbjct: 1    IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRG 60

Query: 396  PHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHK 455
                PG   AKYIIRD+G+R+DLR+  K SD HL+ GY+VERH+ DGD V+FNRQP+LHK
Sbjct: 61   NSQYPG---AKYIIRDNGERIDLRFHPKPSDLHLQCGYRVERHVRDGDVVIFNRQPTLHK 117

Query: 456  MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 515
            MS+MGH I++ P+STFR+NLSVT+PYNADFDGDEMN+HVPQS ETRAE+ EL +VP+ I+
Sbjct: 118  MSMMGHHIRVFPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAIVPRQII 177

Query: 516  SPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLW 575
            +PQSNRPVMGIVQDTL   RK+TKRD F++KD  MNILM+   +DGK+PQP ILKP+P+W
Sbjct: 178  TPQSNRPVMGIVQDTLTAVRKMTKRDVFLDKDQMMNILMFLPIWDGKMPQPAILKPKPVW 237

Query: 576  TGKQVFNLIIPKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLG 631
            TGKQVF+LIIP  +N+ RT + H D+ D G    ++ GDT V +E GEL+ G LCKK+LG
Sbjct: 238  TGKQVFSLIIPGNVNMIRTHSTHPDDEDDGPYKWISPGDTKVLVEHGELMCGILCKKSLG 297

Query: 632  TSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTI 691
            TS GSL+H++  E+G + A  F  H Q +VN WLL    +IGIGDTIAD +T   I +TI
Sbjct: 298  TSAGSLLHIVMLELGWETAGLFYSHIQTVVNNWLLLEGHTIGIGDTIADQQTYHEIQETI 357

Query: 692  SKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNL 751
             KAK +V  +I++A +  LEP PG T+ ++FEN+VN++LN ARD+ G SAQ+SLSE NN 
Sbjct: 358  RKAKQDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAQRSLSEFNNF 417

Query: 752  KAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENS 811
            KAMV +G+KGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENS
Sbjct: 418  KAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS 477

Query: 812  YLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 871
            YL GLTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +
Sbjct: 478  YLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTVRNSVGQL 537

Query: 872  IQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIK 931
            IQ  YGEDG+D   +E Q L +LK     F+K FRF+   E        +E + DL    
Sbjct: 538  IQLRYGEDGLDGGAVEFQALPTLKPSNKAFEKKFRFDASNERQLRRVFNEEIVKDLFGSA 597

Query: 932  ELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMH 991
                  + E   L+ DR  L T I   GDS   LP NL+R+IWNAQK F ++ R P+D+ 
Sbjct: 598  SAVGELEREWXTLKLDREVLRT-IFPKGDSKVVLPCNLQRMIWNAQKIFHINVRTPTDLS 656

Query: 992  PMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAF 1051
            P+ V+E V  L ++L +V GED LS +A  NATL  N L+RST  +KRV +E RL+ EAF
Sbjct: 657  PLRVIEGVRDLTKKLVIVVGEDALSKQANDNATLLINCLIRSTLCTKRVAEEFRLSAEAF 716

Query: 1052 EWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1086
            EW++GEIE+RF  + V PGEM+G +AAQS+GEPAT
Sbjct: 717  EWLLGEIETRFQHAQVQPGEMVGALAAQSLGEPAT 751


>gi|341859010|gb|AEK97415.1| ribosomal polymerase II largest subunit [Beauveria malawiensis]
 gi|341859012|gb|AEK97416.1| ribosomal polymerase II largest subunit [Beauveria malawiensis]
          Length = 954

 Score =  949 bits (2452), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/979 (50%), Positives = 649/979 (66%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVIEGHGGCGNMQPQVRQAALQLKAAFEIT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFENQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+ AV  L   +++V G DP+S+EA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITAVQTLLANMQIVRGTDPISIEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|226876158|gb|ACO89400.1| RNA polymerase II largest subunit, partial [Capronia sp. WUC 26]
          Length = 983

 Score =  948 bits (2451), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1013 (49%), Positives = 666/1013 (65%), Gaps = 55/1013 (5%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GFM  V  I+ +VC NC KI A E +   + AL +R+ K R   +    K
Sbjct: 1    IKLATPVYHYGFMTKVKKILETVCHNCGKIKAPESE-DLRHALSLRDRKRRFDAVWRLSK 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKK----NKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDD 198
             +  CE       P +D ++PLK       GGCG  QP++  +G+++ A +K  RK  D+
Sbjct: 60   PRLVCEAD-----PPEDPDQPLKGPPQPKHGGCGNAQPEIRRQGLQLWASWKP-RKGEDE 113

Query: 199  QEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV-- 256
            ++  PE    K+ +  +  L   + ++DE  +L+GL+  YARPDWMIL  LP+PPPPV  
Sbjct: 114  EDTTPE----KKRIFPQDALNTFRTLTDETLELMGLSLDYARPDWMILSALPVPPPPVRP 169

Query: 257  -----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
                       R  DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY D
Sbjct: 170  SISVDGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMD 229

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            NE+ G  RA  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++G
Sbjct: 230  NEIAGLDRAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVG 289

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP SIA  LTYPETVTP+N+++LK LV  GP+  PG   A+Y+IRD G+R+DLR+ K++ 
Sbjct: 290  VPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPG---ARYVIRDTGERIDLRHHKRAG 346

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
            +  L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNADF
Sbjct: 347  EMTLQYGWKVERHIQDGDVILFNRQPXXXXXX----RVRVMPYSTFRLNLSVTTPYNADF 402

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS E+RAE+  L MVP  IVSPQ N P+MGIVQDTL G  K+ +RD F+ 
Sbjct: 403  DGDEMNLHVPQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKLCRRDVFLS 462

Query: 546  KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD----- 600
            ++  MNI++W  D+DG +PQP I+KPRP WTGKQ+ ++I+P  +NL R  A   D     
Sbjct: 463  REHVMNIMLWVPDWDGVIPQPAIIKPRPRWTGKQMVSMILPAALNLERLDAKGEDPFVPT 522

Query: 601  NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWL 660
            ND G++        + +G L+ G   KK +GTS G +IH I+ E G +AA  F    Q +
Sbjct: 523  NDTGLM--------VLEGNLMFGLFSKKFVGTSAGGVIHTIFNEFGHEAAMAFFNGAQTV 574

Query: 661  VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
            VNYWLL N FSIGIGDT+ D  T+  I + +   K  V+ L  +A  + LEP PG  + +
Sbjct: 575  VNYWLLHNGFSIGIGDTVPDPGTVIKIQNAVDTKKAEVQELTIRAYKEDLEPSPGMNVRQ 634

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            +FE+KV   LN ARD+AG++ + SL + NN   M  AGSKGS INI+QMTA VGQQ VEG
Sbjct: 635  TFESKVMNSLNQARDQAGAATEDSLKDLNNGITMARAGSKGSTINIAQMTAIVGQQAVEG 694

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIPFGF  RTLPHF KDDY   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+
Sbjct: 695  KRIPFGFKYRTLPHFAKDDYSAPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTA 754

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRLVKA+E++ VKYD TVR+S G+V+QF+YGEDG+D   IE+Q +D + M    
Sbjct: 755  ETGYIQRRLVKALEEVTVKYDSTVRDSRGNVVQFIYGEDGLDGAHIENQKVDIITMSDKA 814

Query: 901  FDKAFRFEM---DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIAT 957
            F+  F  ++   D   W    +LQ    +L+   EL+++FD E++ L   R     ++  
Sbjct: 815  FNNRFAVDVMSGDVSLWR-GKLLQAR--ELQGDTELQEMFDEELETLWECR-DFLRKMGK 870

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
              + S  LP+N+ R+I  AQK FK+     +D+ P   + AV+ L +RL VV G+DP+S 
Sbjct: 871  GTEDSMQLPLNIGRIIDQAQKNFKIRRGDKTDLDPRHAITAVNNLLDRLIVVRGDDPISQ 930

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            EAQ NATL     LRS  A KR++ EH L R AF+ +IG IESRF+ +   PG
Sbjct: 931  EAQTNATLLLKAQLRSRLAYKRLVLEHGLNRLAFDNIIGGIESRFIAAAANPG 983


>gi|341858934|gb|AEK97377.1| ribosomal polymerase II largest subunit [Beauveria asiatica]
 gi|341858936|gb|AEK97378.1| ribosomal polymerase II largest subunit [Beauveria asiatica]
          Length = 953

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/978 (50%), Positives = 649/978 (66%), Gaps = 52/978 (5%)

Query: 95   MKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEID 154
            +K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  D
Sbjct: 1    IKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQD 60

Query: 155  VPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERK 209
                +   P  KN      GGCG  QP++    +++ A ++         E+ P+   RK
Sbjct: 61   KNKDEEFAPAVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEIT------SEEGPK---RK 111

Query: 210  QT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPPP 254
            +T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +     
Sbjct: 112  ETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGT 171

Query: 255  PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRA 314
              R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPRA
Sbjct: 172  GTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRA 231

Query: 315  TQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNL 374
             Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  L
Sbjct: 232  LQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTL 291

Query: 375  TYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK 434
            TYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+K
Sbjct: 292  TYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGWK 348

Query: 435  VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHV 494
            VERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+HV
Sbjct: 349  VERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHV 408

Query: 495  PQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM 554
            PQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N+++
Sbjct: 409  PQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLML 468

Query: 555  WWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGDT 611
            W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L     
Sbjct: 469  WVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDELDNPRHDAGLL----- 522

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
               I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   FS
Sbjct: 523  ---IQSGELMYGLLKKKSVGAAPGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGFS 579

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  LN
Sbjct: 580  IGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMALN 639

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  RT
Sbjct: 640  MARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRT 699

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVK
Sbjct: 700  LPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 759

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            A+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++  
Sbjct: 760  ALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFESQYRLDLAN 819

Query: 912  --ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLPV 967
              E +  +Y   EY ++L   +   ++ D E   L ADR +LA +I  S  G+    LP+
Sbjct: 820  PPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLARDINKSKMGEEMMQLPL 875

Query: 968  NLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFF 1027
            N+ R+I +A++ F +     S++ P +V+  V  L   +++V G+DP+SVEA  NAT+ F
Sbjct: 876  NIGRIIESAKRVFNIRETDRSNLRPSDVITTVQNLLANMQIVRGKDPISVEADYNATILF 935

Query: 1028 NILLRSTFASKRVLKEHR 1045
              LLRS  A K ++  HR
Sbjct: 936  KALLRSRLAFKEIVYVHR 953


>gi|341858880|gb|AEK97350.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
 gi|341858882|gb|AEK97351.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
 gi|341858886|gb|AEK97353.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
 gi|341858888|gb|AEK97354.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
 gi|341858890|gb|AEK97355.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
 gi|341858892|gb|AEK97356.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
 gi|341858894|gb|AEK97357.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
 gi|341858896|gb|AEK97358.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858898|gb|AEK97359.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858900|gb|AEK97360.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858902|gb|AEK97361.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858904|gb|AEK97362.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858906|gb|AEK97363.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858908|gb|AEK97364.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858910|gb|AEK97365.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858912|gb|AEK97366.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858914|gb|AEK97367.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858916|gb|AEK97368.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858918|gb|AEK97369.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858920|gb|AEK97370.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858922|gb|AEK97371.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858924|gb|AEK97372.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858926|gb|AEK97373.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858930|gb|AEK97375.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858932|gb|AEK97376.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
 gi|341858942|gb|AEK97381.1| ribosomal polymerase II largest subunit [Beauveria australis]
 gi|341858944|gb|AEK97382.1| ribosomal polymerase II largest subunit [Beauveria australis]
          Length = 954

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/979 (50%), Positives = 648/979 (66%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFESQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +++V G DP+SVEA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITTVQNLLANMQIVRGTDPISVEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|341858990|gb|AEK97405.1| ribosomal polymerase II largest subunit [Beauveria sungii]
          Length = 954

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/979 (50%), Positives = 648/979 (66%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKENKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFENQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+ AV  L   +++V G D +S+EA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITAVQTLLANMQIVRGTDAISIEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|341859000|gb|AEK97410.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
 gi|341859002|gb|AEK97411.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
 gi|341859006|gb|AEK97413.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
          Length = 954

 Score =  948 bits (2450), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/979 (50%), Positives = 648/979 (66%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFENQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +++V G DP+S+EA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITTVQTLLANMQIVRGTDPISIEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|341859008|gb|AEK97414.1| ribosomal polymerase II largest subunit [Beauveria vermiconia]
          Length = 954

 Score =  947 bits (2449), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/979 (50%), Positives = 648/979 (66%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFETQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +++V G DP+S+EA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITTVQTLLANMQIVRGTDPISIEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|341858946|gb|AEK97383.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
 gi|341858948|gb|AEK97384.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
 gi|341858950|gb|AEK97385.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
 gi|341858954|gb|AEK97387.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
 gi|341858956|gb|AEK97388.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
 gi|341858960|gb|AEK97390.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
 gi|341858962|gb|AEK97391.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
          Length = 954

 Score =  947 bits (2449), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/979 (50%), Positives = 648/979 (66%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFENQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +++V G DP+S+EA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITTVQTLLANMQIVRGTDPISIEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|341858884|gb|AEK97352.1| ribosomal polymerase II largest subunit [Beauveria bassiana]
          Length = 954

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/979 (50%), Positives = 648/979 (66%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNS+GDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSMGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFESQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +++V G DP+SVEA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITTVQNLLANMQIVRGTDPISVEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|341858982|gb|AEK97401.1| ribosomal polymerase II largest subunit [Beauveria sungii]
 gi|341858984|gb|AEK97402.1| ribosomal polymerase II largest subunit [Beauveria sungii]
 gi|341858986|gb|AEK97403.1| ribosomal polymerase II largest subunit [Beauveria sungii]
 gi|341858988|gb|AEK97404.1| ribosomal polymerase II largest subunit [Beauveria sungii]
 gi|341858992|gb|AEK97406.1| ribosomal polymerase II largest subunit [Beauveria sungii]
 gi|341858994|gb|AEK97407.1| ribosomal polymerase II largest subunit [Beauveria sungii]
          Length = 954

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/979 (50%), Positives = 648/979 (66%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFENQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+ AV  L   +++V G D +S+EA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITAVQTLLANMQIVRGTDAISIEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|341859004|gb|AEK97412.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
          Length = 954

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/979 (50%), Positives = 648/979 (66%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFENQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +++V G DP+S+EA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITTVQTLLANMQIVRGMDPISIEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|341858958|gb|AEK97389.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
          Length = 954

 Score =  947 bits (2448), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/979 (50%), Positives = 648/979 (66%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELIYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFENQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +++V G DP+S+EA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITTVQTLLANMQIVRGTDPISIEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|341859022|gb|AEK97421.1| ribosomal polymerase II largest subunit [Cordyceps militaris]
          Length = 952

 Score =  947 bits (2447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/973 (50%), Positives = 644/973 (66%), Gaps = 44/973 (4%)

Query: 96   KTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDV 155
            K V  ++  VC NCSK+LADE D +F  A++ R+PK R K+I   CK K KCE  +  D 
Sbjct: 1    KKVKKVLEIVCHNCSKVLADESDPEFVAAVRTRDPKVRFKRIWAVCKKKRKCENEERQDK 60

Query: 156  PGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
               +   P  KN      GGCG  QP++    +++ A ++       + E+ P+   RK+
Sbjct: 61   NKDEEFAPAVKNTVLEGHGGCGNMQPQVRQAALQLKAAFEV------NSEEGPK---RKE 111

Query: 211  T--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPPPP 255
            T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +      
Sbjct: 112  TVNISAEMAHGILRRISERDLHNMGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 171

Query: 256  VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRAT 315
             R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPRA 
Sbjct: 172  TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 231

Query: 316  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 375
            Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  LT
Sbjct: 232  QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 291

Query: 376  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 435
            YPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+KV
Sbjct: 292  YPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGWKV 348

Query: 436  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 495
            ERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVP
Sbjct: 349  ERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 408

Query: 496  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 555
            Q+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L GC K+ +RDTFI+K++  NI++W
Sbjct: 409  QTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGCYKLCRRDTFIDKELVQNIMLW 468

Query: 556  WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRI 615
              ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+      +  DK      D  + I
Sbjct: 469  VPNWDGVIPQPAILKPRPRWTGKQIISMVIPAEISLY------SKEDKLDNPKHDAGMLI 522

Query: 616  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 675
            + G+L+ G L KK +G + G +IH+ + E+GPD A  FL   Q +V YWLL    SIGIG
Sbjct: 523  QSGQLIYGLLKKKYVGAAAGGIIHLCYNELGPDGAMAFLNGVQQVVTYWLLNTGHSIGIG 582

Query: 676  DTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARD 735
            DTI D +T++ I   I + K  V  L  QA    LE  PG  +  +FE+KV+  LN ARD
Sbjct: 583  DTIPDKETIDKIQAHIDEHKAEVARLTAQATANELEALPGMNVRATFESKVSLALNMARD 642

Query: 736  EAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 795
            +AG+S QKSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  RTLPHF
Sbjct: 643  QAGTSTQKSLKDSNNAVTMSESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHF 702

Query: 796  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 855
            TKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED
Sbjct: 703  TKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALED 762

Query: 856  IMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE--EN 913
            +  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F++ +R ++    E 
Sbjct: 763  LSARYDGTVRNSLGDVIQFLYGEDGLDAMCIERQRLGTIKMSDAAFERQYRLDLANPPEW 822

Query: 914  WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLA-TEIATSGDSSWPLPVNLKRL 972
            +  +Y   EY ++L   K   ++ D E   L ADR  +        G+    LP+N+ R+
Sbjct: 823  FRKDY---EYGNELAGDKASMELLDMEWDTLLADRRAVRDINKHKMGEEMMQLPLNIGRI 879

Query: 973  IWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 1032
            I +A++ F +     S++ P +V+  V  L   +K+V G DP+S+EA  NAT+ F  LLR
Sbjct: 880  IESAKRVFNIRETDRSNLRPSDVITTVQTLLSGMKIVRGSDPISLEADFNATILFKALLR 939

Query: 1033 STFASKRVLKEHR 1045
            S  A K ++  HR
Sbjct: 940  SRLAFKEIVYVHR 952


>gi|341858972|gb|AEK97396.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
 gi|341858976|gb|AEK97398.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
 gi|341858978|gb|AEK97399.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
 gi|341858980|gb|AEK97400.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
          Length = 954

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/979 (50%), Positives = 648/979 (66%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAPGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFESQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +++V G DP+S+EA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITTVQTLLANMQIVRGTDPISIEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|157741508|gb|ABV69459.1| RNA polymerase II largest subunit, partial [Placidiopsis
            cartilaginea]
          Length = 989

 Score =  946 bits (2446), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1010 (49%), Positives = 669/1010 (66%), Gaps = 43/1010 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D  + +  L +R+ K R + I    +
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKA-VDSEELRFTLSVRDRKKRFELIWRLSQ 59

Query: 143  NKTKCEGG---DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
             +  C+     +E D  G++    +K   GGCG  QP +   G+++ A+YK  RK +D++
Sbjct: 60   KQNVCQADAVDEENDAFGKEKAGRIKH--GGCGNAQPAIRKTGLELWAQYKP-RKGDDEE 116

Query: 200  EQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV--- 256
            E +PE    K  +   + L V + ++D+    LGL+  +ARP+WMILQ LP+PPPPV   
Sbjct: 117  ETVPE----KSQIWPAQALQVFQHLTDDTLGTLGLSLDFARPEWMILQSLPVPPPPVRPS 172

Query: 257  ----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
                      R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN
Sbjct: 173  ISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDN 232

Query: 307  ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
            ++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GV
Sbjct: 233  DIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGV 292

Query: 367  PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
            P SIA  LTYPETVT +N +RLK+ V  GP   PG   A+YIIR+ G+R+DLR+ K    
Sbjct: 293  PRSIARTLTYPETVTRFNKDRLKQFVTNGPDIHPG---ARYIIREQGERIDLRFHKDPKS 349

Query: 427  HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 486
              L  G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNADFD
Sbjct: 350  ITLLTGWKVERHIMDGDIILFNRQPXXX-------RVRVMPYSTFRLNLSVTTPYNADFD 402

Query: 487  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
            GDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ +
Sbjct: 403  GDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSR 462

Query: 547  DVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKGI 605
            +  MNI++W  D+DG +PQP I KPRP WTGKQV ++++P  +NL R     +    +  
Sbjct: 463  EEVMNIMLWIPDWDGVIPQPAIFKPRPRWTGKQVISMVLPPALNLVRIDGKPSQPPGERF 522

Query: 606  LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
              AGD+ + +  G L+ G   KK++GT    +IH I+ E G + A  F    Q +VNYWL
Sbjct: 523  APAGDSGLFVTDGLLMFGLFNKKSVGTGANGIIHTIFNEFGHETAMAFFNGAQTVVNYWL 582

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
            L N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+FE+K
Sbjct: 583  LHNGFSIGIGDTVPDVGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESK 642

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            V+  LN ARDEAG++ + SL +SNN   M  AGSKGS INISQMTA VGQQ+VEGKRIPF
Sbjct: 643  VSAALNGARDEAGTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPF 702

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYI
Sbjct: 703  GFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYI 762

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
            QRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F++ F
Sbjct: 763  QRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDIAFEQQF 822

Query: 906  RFEMDEENWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADR--YQLATEIATSGD 960
            R ++ E       + Q+ ++    I    +++ +FD E ++L  DR   +   + AT+ D
Sbjct: 823  RVDLMEPT---KLVWQDRLEQASEIHGDVDVQKLFDEEYEQLVEDRGFLRYIKQAATTSD 879

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
               PLP+N+ R++  A+ TFK+    PSD+HP  V+  V +L +RL VV GED +S+EAQ
Sbjct: 880  EMMPLPMNILRILNQARTTFKIQSGSPSDLHPSYVIPKVKQLLDRLIVVRGEDRISLEAQ 939

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
            +NATL     LRS  A KR++ E+ L R AF+ V+G +E+RF++++ +PG
Sbjct: 940  ENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAVETRFIKAMASPG 989


>gi|341858968|gb|AEK97394.1| ribosomal polymerase II largest subunit [Beauveria varroae]
          Length = 954

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/979 (50%), Positives = 648/979 (66%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFESQYRLDLA 819

Query: 911  EENWNPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
                 P++  +  EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NP---PDWFRKDYEYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +++V G DP+S+EA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITTVQNLLANMQIVRGTDPISIEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|341858964|gb|AEK97392.1| ribosomal polymerase II largest subunit [Beauveria varroae]
 gi|341858966|gb|AEK97393.1| ribosomal polymerase II largest subunit [Beauveria varroae]
          Length = 954

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/979 (50%), Positives = 648/979 (66%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFESQYRLDLA 819

Query: 911  EENWNPNYMLQ--EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
                 P++  +  EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NP---PDWFRKDYEYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +++V G DP+S+EA  NAT+ 
Sbjct: 876  LNVGRIIESAKRVFNIRETDRSNLRPSDVITTVQNLLANMQIVRGTDPISIEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|336091018|gb|AEI00186.1| RNA polymerase II largest subunit [Capronia peltigerae]
          Length = 973

 Score =  945 bits (2443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1008 (49%), Positives = 657/1008 (65%), Gaps = 62/1008 (6%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA+P++H GF+  V  ++ +VC NC KI A  D+ + + AL  ++PK R +K+    K
Sbjct: 2    VKLAEPVYHHGFLTKVKKVLETVCHNCGKIKA-LDNLERQAALATKHPKGRFEKLWRLSK 60

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQL 202
             +  CE     D    + + P   + GGCG  QP +  +G+ + A YK  + KN+D E++
Sbjct: 61   PRLICEPSPSAD--DDNPKAPKGPDHGGCGNVQPLIRKKGLALEAHYK--KGKNEDDEEV 116

Query: 203  PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS--- 259
                 R   + A R L +L+ ++DE   ++GLN  YARP+W ILQ LP+PPP VRPS   
Sbjct: 117  QTETHR---IYARRALQILQLLTDETITMMGLNKDYARPEWFILQSLPVPPPAVRPSVSQ 173

Query: 260  ---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPG 310
                     DDLT++LA I+R N+++ R E +G P HI ++   LL++HI TY DNE+ G
Sbjct: 174  DGGTGPRNEDDLTYKLADIVRANQSVTRCEVDGTPEHIKNQLVDLLEYHINTYMDNEIAG 233

Query: 311  QPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSI 370
              RA  +SGRPIK+I +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SI
Sbjct: 234  LDRAQHKSGRPIKAIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSI 293

Query: 371  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 430
            A  LT+PETVT +NIERLK  V  GP   PG   A+Y IR  G R+DLR+ KKS D +L+
Sbjct: 294  ARTLTFPETVTNFNIERLKRCVANGPTEWPG---ARYAIRGSGDRIDLRHAKKSGDINLQ 350

Query: 431  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 490
             G+KVERH+ DGD +LFNRQPSL                 FRLNLSVTSPYNADFDGDEM
Sbjct: 351  YGWKVERHIVDGDIILFNRQPSL--------------XXXFRLNLSVTSPYNADFDGDEM 396

Query: 491  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
            N+HVPQS E RAE+L+L MVP+ IVSPQ N P+MGIVQDTL G  K+T+RD F+ K+  M
Sbjct: 397  NLHVPQSQEARAELLQLCMVPRNIVSPQKNAPLMGIVQDTLCGVYKLTRRDVFLTKEQVM 456

Query: 551  NILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA------AWHADNDKG 604
            NI++W  ++DG +PQP +LKP P WTGKQ+F++++P  +NL R         W   +D  
Sbjct: 457  NIMLWVPEWDGVIPQPALLKPTPRWTGKQIFSMVLPSNLNLQRKEDKTELEHWFHPSDAS 516

Query: 605  ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYW 664
            ++  G        GE++ G + KK +GT  G +IH I+ E G DAA  F    Q +VNYW
Sbjct: 517  LIVQG--------GEVMMGQMHKKHVGTGAGGVIHTIFNENGHDAAMAFFNGAQVVVNYW 568

Query: 665  LLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFEN 724
            LL   FSIGIGDT+ D  T+  I D +   K  V  +  +A    LEP PG  + ++FE+
Sbjct: 569  LLHYGFSIGIGDTVPDVDTVGKIQDVVDTQKALVDKITAKAYANKLEPAPGMNVRQTFES 628

Query: 725  KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIP 784
            KV   LN ARD AG SAQ+SL + NNL  M  +GSKGS INI+Q+ A VGQQ VEGKRIP
Sbjct: 629  KVMMELNKARDVAGDSAQQSLKDLNNLTQMARSGSKGSGINIAQVMALVGQQAVEGKRIP 688

Query: 785  FGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGY 844
            FGF  RTLPHF+KDDY   SRGF+ENSY RGLTP EFFFHAM GREGLIDTAVKT+ETGY
Sbjct: 689  FGFNYRTLPHFSKDDYSATSRGFIENSYXRGLTPTEFFFHAMAGREGLIDTAVKTAETGY 748

Query: 845  IQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKA 904
            IQRRLVKA+E++ VKYDGTVR+S G+V+QF+YGEDG+D   IE+Q +D +      FDK 
Sbjct: 749  IQRRLVKALEEVSVKYDGTVRDSRGNVMQFVYGEDGLDGAHIENQKVDFITPSDKAFDKR 808

Query: 905  FRFEMDE---ENWNPNYM-LQEYIDDLKTIKELRDVFDAEVQKLEADR---YQLATEIAT 957
            ++ ++     + W    +  Q+ I D     +L+D+FD E +KL   R     +    + 
Sbjct: 809  YKVDLVHGSVKQWKGVLVQAQQLIGD----TDLQDLFDEEYEKLLESRTFFRSIRGNTSL 864

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
              +  + LP+N+ R+I  AQ+ FK+     +D+ P  V+ AV++L +RL V+ G D LS 
Sbjct: 865  GAEDDFQLPLNVARIIEQAQRAFKIRRGDKTDLDPRYVLNAVNQLMDRLPVIRGSDELSR 924

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
            EAQ NATL F   LRS  A KR++ EH LT+ AF+ +IG +ESRFL +
Sbjct: 925  EAQDNATLLFRSQLRSKLAYKRLVLEHSLTKLAFDNIIGGVESRFLAA 972


>gi|341858952|gb|AEK97386.1| ribosomal polymerase II largest subunit [Beauveria pseudobassiana]
          Length = 952

 Score =  944 bits (2439), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/977 (50%), Positives = 646/977 (66%), Gaps = 52/977 (5%)

Query: 96   KTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDV 155
            K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  D 
Sbjct: 1    KKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQDK 60

Query: 156  PGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
               +   P  KN      GGCG  QP++    +++ A ++         E+ P+   RK+
Sbjct: 61   NKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---RKE 111

Query: 211  T--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPPPP 255
            T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +      
Sbjct: 112  TVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGTG 171

Query: 256  VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRAT 315
             R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPRA 
Sbjct: 172  TRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRAL 231

Query: 316  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 375
            Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  LT
Sbjct: 232  QKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLT 291

Query: 376  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 435
            YPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+KV
Sbjct: 292  YPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGWKV 348

Query: 436  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 495
            ERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVP
Sbjct: 349  ERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 408

Query: 496  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 555
            Q+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N+++W
Sbjct: 409  QTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLMLW 468

Query: 556  WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGDTL 612
              ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L      
Sbjct: 469  VPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL------ 521

Query: 613  VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSI 672
              I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   FSI
Sbjct: 522  --IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGFSI 579

Query: 673  GIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNT 732
            GIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  LN 
Sbjct: 580  GIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMALNM 639

Query: 733  ARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTL 792
            ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  RTL
Sbjct: 640  ARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTL 699

Query: 793  PHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKA 852
            PHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA
Sbjct: 700  PHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 759

Query: 853  MEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE- 911
            +ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++   
Sbjct: 760  LEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFENQYRLDLANP 819

Query: 912  -ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLPVN 968
             E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP+N
Sbjct: 820  PEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLPLN 875

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            + R+I +A++ F +     S++ P +V+  V  L   +++V G DP+S+EA  NAT+ F 
Sbjct: 876  IGRIIESAKRVFNIRETDRSNLRPSDVITTVQTLLANMQIVRGTDPISIEADYNATILFK 935

Query: 1029 ILLRSTFASKRVLKEHR 1045
             LLRS  A K ++  HR
Sbjct: 936  ALLRSRLAFKEIVYVHR 952


>gi|226876160|gb|ACO89401.1| RNA polymerase II largest subunit, partial [Capronia sp. WUC 102]
          Length = 994

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1020 (49%), Positives = 664/1020 (65%), Gaps = 48/1020 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA  +FH GFM  V  I+ +VC NC KI A  D    + AL +R+PK R   +    K
Sbjct: 1    IKLATSVFHYGFMTKVKKILETVCHNCGKIKA-LDSEDLRHALSLRDPKRRFDAVWRLSK 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQL 202
             +  CE  D  D P Q  + P +   GGCG  QP +   G+++ A +K  RK  D+++  
Sbjct: 60   PRQICEA-DPPDDPDQLLKGPPQPKHGGCGNAQPDIRRTGLQLWASWKP-RKGEDEEDAT 117

Query: 203  PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------ 256
            PE    K+ +  +  L   + ++D+  Q +GL+  YARP+WMIL  LP+PPPPV      
Sbjct: 118  PE----KKRIFPQDALNTFRILTDDTLQKMGLSLDYARPEWMILSALPVPPPPVRPSISV 173

Query: 257  -------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELP 309
                   R  DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DNE+ 
Sbjct: 174  DGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNEIA 233

Query: 310  GQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWS 369
            G  +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP S
Sbjct: 234  GLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 293

Query: 370  IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD-HH 428
            IA  LTYPETVT ++ +RL  LV+ GP+  PG   A+YIIRD G+R+DLR+ K+  D  +
Sbjct: 294  IARTLTYPETVTDFSRDRLTRLVKNGPNEHPG---ARYIIRDTGERIDLRHHKRIGDGFY 350

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            L+ G+KVERH+ DGD +LFNRQP          R+++MPYSTFRLNLSVT+PYNADFDGD
Sbjct: 351  LQTGWKVERHIQDGDVILFNRQPXXXXXX----RVRVMPYSTFRLNLSVTTPYNADFDGD 406

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMN+HVPQS E+RAE+  L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ +D 
Sbjct: 407  EMNLHVPQSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRDQ 466

Query: 549  FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD-----NDK 603
             MN+++W  D+DG +PQP I+KP P WTGKQ+ ++ +P  +NL R  A   D     ND 
Sbjct: 467  VMNLMLWVPDWDGVIPQPAIIKPTPRWTGKQMISMALPATLNLERLDAKGEDLYVPTNDT 526

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
            G++        + +G L+ G   KK +GTS G +IH I+ E G + A KF    Q +VNY
Sbjct: 527  GLM--------VLEGTLMFGLFSKKFVGTSAGGVIHTIFNEFGHETAMKFFNGAQTVVNY 578

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            WLL N FSIGIGDT+ D  T+  I   +   K  V  +  +A  + LEP PG  + ++FE
Sbjct: 579  WLLHNGFSIGIGDTVPDPDTVTKIQQAVDAKKAEVDEITIRAYKEDLEPSPGMNVRQTFE 638

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
            +KV   LN ARD+AG++ + SL + NN   M  AGSKGS INI+QMTA VGQQ VEGKRI
Sbjct: 639  SKVMNSLNQARDQAGTATEDSLKDLNNGIQMARAGSKGSTINIAQMTAIVGQQAVEGKRI 698

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
            PFGF  RTLPHF KDDY   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETG
Sbjct: 699  PFGFKYRTLPHFAKDDYSAPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETG 758

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRRLVKA+E++ V+YD TVR+S G+V+QF+YGEDG+D   IE+Q +D + M    F+ 
Sbjct: 759  YIQRRLVKALEEVTVRYDSTVRDSRGNVVQFIYGEDGLDGAHIENQKVDIITMSDKAFNN 818

Query: 904  AFRFEM---DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGD 960
             F  ++   D   W    +LQ    +L+   E++++FD E++ L   R     ++    +
Sbjct: 819  RFAVDLMSGDVSLWRGK-LLQAR--ELQGDTEMQEMFDEELETLREAR-DFLRKMGKGTE 874

Query: 961  SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ 1020
             S  LP+N+ R+I  AQK FK+     +D+ P   + AV++L +RL VV G+D +S EAQ
Sbjct: 875  DSMQLPLNISRIIDQAQKNFKIRRGDKTDLDPRYALTAVNQLLDRLVVVRGDDAISKEAQ 934

Query: 1021 KNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
             NATL     LRS  A KR++ EH L R AF+ +IG +ESRF+ +   PGEM+G +AAQS
Sbjct: 935  TNATLLLKAQLRSRLAYKRLVLEHGLNRLAFDNIIGGVESRFIAAAANPGEMVGVLAAQS 994


>gi|399569176|gb|AFP47206.1| ribosomal polymerase II largest subunit, partial [Beauveria lii]
          Length = 954

 Score =  940 bits (2430), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/979 (49%), Positives = 646/979 (65%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RG+LMGKRVDFSART IT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGSLMGKRVDFSARTDITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                     HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I K K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDKHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQVVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDV QFLYGEDG+D++ IE Q L  +KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVTQFLYGEDGLDAMCIEKQRLGIIKMSNAAFESQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E ++ +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFHKDY---EYGNELAGDRAPMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +++V G DP+S+EA  NAT+ 
Sbjct: 876  LNIGRVIESAKRVFNIRETDRSNLRPSDVITTVQNLLANMQIVRGTDPISIEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|341858996|gb|AEK97408.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
 gi|341858998|gb|AEK97409.1| ribosomal polymerase II largest subunit [Beauveria caledonica]
          Length = 954

 Score =  938 bits (2424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/979 (49%), Positives = 644/979 (65%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                         +MPYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXXXXXVMPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFENQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +++V G DP+S+EA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITTVQTLLANMQIVRGTDPISIEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|226876217|gb|ACO89429.1| RNA polymerase II largest subunit, partial [Chaetothyriomycetidae sp.
            TRN242]
          Length = 980

 Score =  937 bits (2422), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1005 (49%), Positives = 659/1005 (65%), Gaps = 52/1005 (5%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GFM  V  I+ +VC  C KI A  D    + AL +R+ K R + I    K K  CE    
Sbjct: 2    GFMTKVKKILETVCXXCGKIKA-TDSEDLRHALSVRDRKRRFEMIWRLSKPKLICEA--- 57

Query: 153  IDVPGQDGEEPLKKNKG-------GCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEP 205
             D P +D E    K KG       GCG  QP++    +K+ A +K   +K +D+E   + 
Sbjct: 58   -DPPAEDEEGGFAKEKGAPQALHGGCGNAQPEIRKSELKLWASWKP--RKGEDEE---DT 111

Query: 206  VERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV--------- 256
            V  KQ L  E  L +LK +SDE  + LG+N  +ARP+WMILQ LP+PPPPV         
Sbjct: 112  VADKQRLFPEEALRILKLLSDETLETLGMNLDFARPEWMILQALPVPPPPVRPSISVDGS 171

Query: 257  ----RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQP 312
                R  DDLT +LA I+R N+ + R E +G P HI  +   LLQ+HIATY DN + G  
Sbjct: 172  GQGSRGEDDLTFKLADIVRANQQVTRAEADGTPDHIKIDHKDLLQYHIATYMDNNIAGLS 231

Query: 313  RATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIAL 372
             +  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA 
Sbjct: 232  PSQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPKSIAR 291

Query: 373  NLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELG 432
            NLTYPETVTP+N+++LK+LV  GP+  PG   A+Y+IRD+G+RLDL+Y K++ +  L+ G
Sbjct: 292  NLTYPETVTPFNLDKLKKLVANGPNEHPG---ARYVIRDNGERLDLKYHKRAGEITLQYG 348

Query: 433  YKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNM 492
            +KVERH+ DGD                  R+++MPYSTFRLNLSVTSPYNADFDGDEMN+
Sbjct: 349  WKVERHIVDGDVX----XXXXXXXXXXXXRVRVMPYSTFRLNLSVTSPYNADFDGDEMNL 404

Query: 493  HVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNI 552
            HVPQS E+RAE+  L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++  MNI
Sbjct: 405  HVPQSEESRAELANLCMVPLNIVSPQRNSPLMGIVQDTLAGVYKICRRDVFLSREEVMNI 464

Query: 553  LMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT------AAWHADNDKGIL 606
            ++W  D+DG +PQP I+KPRP W+GKQ+ ++++P+ +NL RT      A W    D G+L
Sbjct: 465  MLWVPDWDGVIPQPAIVKPRPRWSGKQIISMVLPQALNLERTEGKDELARWCPATDGGLL 524

Query: 607  TAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 666
             A         G+++ G L KK +G   G +IH I+ E G + A  F    Q +VNYWLL
Sbjct: 525  VA--------DGQVVFGLLNKKQVGAGAGGIIHTIFNEFGHETALSFFNGAQCVVNYWLL 576

Query: 667  QNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKV 726
             N FSIGIGDT+ DA T+E I + ++  K  V ++   A +++LE  PG  + ++FENKV
Sbjct: 577  HNGFSIGIGDTVPDAATVEKIQNEVNLKKKEVHDITTSAYNETLEALPGMNVRQTFENKV 636

Query: 727  NQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 786
            ++ LN ARDEAG+  ++SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKRIPFG
Sbjct: 637  SKALNGARDEAGTVTEQSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPFG 696

Query: 787  FVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 846
            F  RTLPHF KDDY   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQ
Sbjct: 697  FKYRTLPHFAKDDYSAASRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQ 756

Query: 847  RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFR 906
            RRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IE Q +D L M  + F K ++
Sbjct: 757  RRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIEKQRVDILTMADAAFAKRYQ 816

Query: 907  FEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLP 966
             ++ E   +      E  ++++   E++D+FD E ++LEADR  L  ++    +    LP
Sbjct: 817  VDLMESMKSVFQGKLEQENEIRGSVEMQDLFDEEYERLEADRAFL-RDMGLGNEDQMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R++  AQKTFK+     +++ P   +  V  L ERL +V G D +S EAQ+NAT+ 
Sbjct: 876  LNIFRILNQAQKTFKIPKDSTTNLDPAYAIPRVKSLLERLVIVRGTDRISQEAQENATML 935

Query: 1027 FNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
                LRS  A KR++ E  L R AF+ VI  +E+RF+++  +PGE
Sbjct: 936  LKAQLRSYLAFKRLVIEFSLNRLAFDHVIXAVETRFIKAHASPGE 980


>gi|226876211|gb|ACO89426.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
            TRN115]
          Length = 986

 Score =  935 bits (2416), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1015 (48%), Positives = 657/1015 (64%), Gaps = 56/1015 (5%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GF+  V  ++ +VC NC KI A  D+ + + AL  +NPK R +K+    K +  CE    
Sbjct: 1    GFLTKVKKVLETVCHNCGKIKA-LDNIERQAALATKNPKARFEKLWRLSKPRLICEPSH- 58

Query: 153  IDVPGQDGEEPLKK--NKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
               P  D      K  + GGCG  QP +  +G+ + A YK  + KN+D E++     R  
Sbjct: 59   ---PADDDNPKAAKGPDHGGCGNVQPLIRKKGLALEAHYK--KGKNEDDEEVQTETHR-- 111

Query: 211  TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------- 259
             + A R L +L+ ++DE   ++GLN  YARP+W +LQ LP+PPP VRPS           
Sbjct: 112  -IYARRALQILQLLTDETISMMGLNKDYARPEWFVLQALPVPPPAVRPSVSQDGGTGPRN 170

Query: 260  -DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRS 318
             DDLT++LA I+R N+++ R E +G P HI ++   LL++HI TY DNE+ G  RA  +S
Sbjct: 171  EDDLTYKLADIVRANQSVTRCEVDGTPEHIKNQLVDLLEYHINTYMDNEIAGLDRAQHKS 230

Query: 319  GRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPE 378
            GRPIK+I +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LT+PE
Sbjct: 231  GRPIKAIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTFPE 290

Query: 379  TVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERH 438
            TVT +NIERLK  V  GP   PG   A+Y+IR  G R+DLR+ KKS D +L+ G+KVERH
Sbjct: 291  TVTNFNIERLKRCVANGPTEWPG---ARYVIRGSGDRIDLRHAKKSGDINLQYGWKVERH 347

Query: 439  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
            + DGD                           FRLNLSVT+PYNADFDGDEMN+HVPQS 
Sbjct: 348  IVDGDXXXXXXXXXXXXXXXX----XXXXXXXFRLNLSVTTPYNADFDGDEMNLHVPQSQ 403

Query: 499  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
            E RAE+ +L MVP+ IVSPQ N P+MGIVQDTL G  K+T+RD F+ K+  MNI++W  +
Sbjct: 404  EARAELQQLCMVPRNIVSPQKNAPLMGIVQDTLCGIYKLTRRDVFLSKEQVMNIMLWVPE 463

Query: 559  FDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAA------WHADNDKGILTAGDTL 612
            +DG +PQP +LKP P WTGKQ+ ++++P  +NL R         +   ND  ++      
Sbjct: 464  WDGVIPQPALLKPTPRWTGKQIISMVLPPNLNLQRVDGKTELEHYFHSNDASLI------ 517

Query: 613  VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSI 672
              I+ GE+++G L KK +GT  G +IH I+ E G D A  F    Q +VNYWLL + FSI
Sbjct: 518  --IQGGEVMTGQLHKKHVGTGAGGVIHTIFNENGHDGAMAFFNGAQVVVNYWLLHHGFSI 575

Query: 673  GIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNT 732
            G+GDT+ D  T+  I D +   K  V ++  +A    LEP PG  + ++FE+KV   LN 
Sbjct: 576  GVGDTVPDVDTVGKIQDVVDTQKGLVDDITAEAYANKLEPAPGMNVRQTFESKVMMELNK 635

Query: 733  ARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTL 792
            ARD AG SAQ SL + NNL  M  +GSKGS INI+Q+ A VGQQ VEGKRIPFGF  RTL
Sbjct: 636  ARDTAGDSAQSSLKDLNNLTQMARSGSKGSGINIAQVMALVGQQAVEGKRIPFGFNYRTL 695

Query: 793  PHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKA 852
            PHF+KDDY   SRGF+ENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA
Sbjct: 696  PHFSKDDYSATSRGFIENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 755

Query: 853  MEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE- 911
            +E++ VKYDGTVR+S G+V+QF+YGEDG+D   IE+Q +D +      FD+ ++ ++   
Sbjct: 756  LEEVCVKYDGTVRDSRGNVMQFVYGEDGLDGGHIENQKVDVITPSDKAFDRRYKVDLVHG 815

Query: 912  --ENWNPNYM-LQEYIDDLKTIKELRDVFDAEVQKL-EADRYQLATEIATS--GDSSWPL 965
              + W    +  Q+ I D     +L+D+FDAE +KL E  R+  +    TS   +  + L
Sbjct: 816  SVKQWKGVLVQAQQLIGD----TDLQDLFDAEHEKLVETRRFFRSIRGNTSMGAEDDFQL 871

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL 1025
            P+N+ R+I  AQ+ FK+     +D+ P  V+ AV++L +RL V+ G+D LS EAQ NATL
Sbjct: 872  PLNVSRIIEQAQRAFKIRRGDKTDLDPRYVLNAVNQLMDRLPVIRGDDELSREAQDNATL 931

Query: 1026 FFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
             F   LRS  A KR++ EH LT+ AF+ +IG IESRFL + V+PGEM+G +AA S
Sbjct: 932  LFRSQLRSKLAYKRLVVEHSLTKLAFDNIIGGIESRFLAAAVSPGEMVGVLAAXS 986


>gi|341858928|gb|AEK97374.1| ribosomal polymerase II largest subunit [Beauveria brongniartii]
          Length = 954

 Score =  934 bits (2415), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/979 (49%), Positives = 642/979 (65%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                           PYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXXXXXXXPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFESQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +++V G DP+SVEA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITTVQNLLANMQIVRGTDPISVEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|341859020|gb|AEK97420.1| ribosomal polymerase II largest subunit [Isaria farinosa]
          Length = 954

 Score =  934 bits (2414), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/975 (49%), Positives = 638/975 (65%), Gaps = 44/975 (4%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  D  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAVNTRDPKLRFKRVWAVCKKKRKCENEDRQ 60

Query: 154  DVPGQDGEEP-----LKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P     + +  GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEDFAPGVKSVVLEGHGGCGNMQPQVRQAALQLKAAFEVV------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RISD D   +GLN  YARP+WM++ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISDRDLHNIGLNSDYARPEWMVITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
              +R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGMRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                           PYSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXXXXXXXPYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTF+EK++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFLEKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLV 613
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+      +  DK      DT +
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPAEISLY------SKEDKLDNPLKDTGM 522

Query: 614  RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
             I+ GEL+ G L KK +G + G +IH+ + E+GPD A  FL   Q +V YWLL    SIG
Sbjct: 523  LIQSGELMYGLLKKKYVGAAAGGIIHLCYNELGPDGAMAFLNGVQQVVTYWLLNTGHSIG 582

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            IGDTI D +T+E I   I + K  V  L  QA    LE  PG  +  +FENKV+  LN A
Sbjct: 583  IGDTIPDRETIEKIQAHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMALNMA 642

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            RD+AG+S QKSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  RTLP
Sbjct: 643  RDQAGTSTQKSLKDSNNAVTMSESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLP 702

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+
Sbjct: 703  HFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAL 762

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE-- 911
            ED+  +YDGTVRNSLGD+IQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++    
Sbjct: 763  EDLSARYDGTVRNSLGDIIQFLYGEDGLDAMCIEKQRLGTIKMSDAAFESQYRLDLANPP 822

Query: 912  ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLA-TEIATSGDSSWPLPVNLK 970
            + +  +Y   EY ++L   K   ++ D E   L ADR  +        G+    LP+N+ 
Sbjct: 823  DWFRKDY---EYGNELAGDKASMELLDMEWDALVADRRAVRDINKHKMGEEMMQLPLNIG 879

Query: 971  RLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 1030
            R+I +A++ F V     S++ P +V+  V  L   +K+V G DP+S+EA  NAT+ F  L
Sbjct: 880  RIIESAKRVFNVRETDRSNLRPSDVITNVQDLLASMKIVRGTDPISLEADYNATILFKAL 939

Query: 1031 LRSTFASKRVLKEHR 1045
            LRS  A K V+  HR
Sbjct: 940  LRSRLAFKEVVYVHR 954


>gi|226876150|gb|ACO89396.1| RNA polymerase II largest subunit, partial [Capronia fungicola]
          Length = 984

 Score =  932 bits (2410), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1013 (49%), Positives = 656/1013 (64%), Gaps = 55/1013 (5%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GFM  V  I+ +VC NC KI A  D    + AL +R+ K R   +    K +  CE    
Sbjct: 2    GFMNKVKKILETVCHNCGKIKA-LDSEDLRHALSLRDRKRRFDAVWRLSKARNICEAD-- 58

Query: 153  IDVPGQDGEEPLKK----NKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
               P +D ++PLK       GGCG  QP +   G+++ A +K  RK  DD++  P+    
Sbjct: 59   ---PPEDPDQPLKGPPQPKHGGCGNLQPDIRRTGLQLWATWKP-RKGEDDEDTTPD---- 110

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------------ 256
            K+ +  +  L   + +SDE  +++GL+  YARP+WMIL  LP+PPPPV            
Sbjct: 111  KKRIFPQDALNTFRTLSDETLEMMGLSLDYARPEWMILTALPVPPPPVRPSISVDGSGQG 170

Query: 257  -RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRAT 315
             R  DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DNE+ G  +A 
Sbjct: 171  QRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNEIAGLDKAQ 230

Query: 316  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 375
             +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LT
Sbjct: 231  HKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLT 290

Query: 376  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 435
            YPETVTP+N+++LK LV  GP+  PG   A+Y+IRD G+R+DLR+ K++ +  L+ G+KV
Sbjct: 291  YPETVTPFNLDKLKRLVANGPNEHPG---ARYVIRDTGERIDLRHHKRAGEMTLQYGWKV 347

Query: 436  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 495
            ERH+ DGD                  R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVP
Sbjct: 348  ERHIQDGDVX----XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVP 403

Query: 496  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 555
            QS E+RAE+  L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++  MNI++W
Sbjct: 404  QSEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNIMLW 463

Query: 556  WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD-----NDKGILTAGD 610
              D+DG +PQP ++KPRP WTGKQ+ ++++P  +NL R  A   D     ND G+L    
Sbjct: 464  VPDWDGVIPQPAVIKPRPRWTGKQMISMVLPAALNLERLDAKGEDPFVPTNDTGLL---- 519

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                + +G L+ G   KK +GTS G +IH I+ E G DAA  F    Q +VNYWLL N F
Sbjct: 520  ----VLEGNLMFGLFSKKFVGTSAGGIIHTIFNEFGHDAAMAFFNGAQTVVNYWLLHNGF 575

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D +T+  I + +   K  V  +  +A  + LEP PG  + ++FE+KV   L
Sbjct: 576  SIGIGDTVPDPETVIKIQEAVDSKKAEVDEITIRAYKEDLEPSPGMNVRQTFESKVMNSL 635

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG++ + SL + NN   M  AGSKGS INI+QMTA VGQQ VEGKRIPFGF  R
Sbjct: 636  NQARDQAGAATENSLKDLNNAITMARAGSKGSTINIAQMTAIVGQQAVEGKRIPFGFKYR 695

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHF KDDY   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 696  TLPHFAKDDYSAPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 755

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM- 909
            KA+E++ VKYD TVR+S G+++QF+YGEDG+D   IE+Q +D + M     +  +  ++ 
Sbjct: 756  KALEEVTVKYDSTVRDSRGNIVQFIYGEDGLDGAHIENQKVDIITMSDKASNARYAVDVM 815

Query: 910  --DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPV 967
              D   W    +LQ    +L+   EL+++FD E++ L A R     ++    + S  LP+
Sbjct: 816  TGDVSMWR-GRLLQAR--ELQGDIELQEMFDEELEALRASR-DFLRKMGKGTEDSMQLPL 871

Query: 968  NLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFF 1027
            N+ R+I  AQK FK+     +D+ P   + +V +L +RL VV GED  S EAQ NATL  
Sbjct: 872  NIGRIIDQAQKNFKIRRGDKTDLDPRHALTSVKQLLDRLVVVRGEDTTSKEAQNNATLLI 931

Query: 1028 NILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
               LRS  A KR++ EH L R AF+ +IG +ESRF+ +  APGEM+G +AAQS
Sbjct: 932  KAQLRSRLAYKRLVLEHGLNRLAFDNIIGGVESRFIAAQAAPGEMVGVLAAQS 984


>gi|57157185|dbj|BAD83622.1| RNA polymerase II subunit Rpb1 [Entamoeba histolytica]
          Length = 1589

 Score =  932 bits (2409), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 592/1631 (36%), Positives = 896/1631 (54%), Gaps = 160/1631 (9%)

Query: 52   LSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSK 111
            L+D  +G  ++  +C+TC     ECPGHFG++EL +P+++  +MK +L +++ VC  C +
Sbjct: 2    LADLCMGPFEKGEECQTCRGTRTECPGHFGYIELTQPVYNAIYMKYILHVLKCVCPICKR 61

Query: 112  ILADEDDHKFKQALKIRNPKN----RLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKN 167
            I    D+       +++N K+    RLK+I +      K  G         D  +  ++ 
Sbjct: 62   IYCHGDE-------RVKNIKSTGEERLKEIYEFIHKNYKACGVLSEKKKDHDKHQNNEEE 114

Query: 168  KGGCGAQQPKLTIEGMKMIAEYKAQ-RKKNDDQEQLPEPVERKQTLTAERVLGVLKRISD 226
            +       P +  E  K+ +E K + R+KN  +         +        L + K ++D
Sbjct: 115  EEQNPCNGPIVDYELPKLKSENKLEIRRKNGIK------TNEENDFKPRDALAIFKDMTD 168

Query: 227  EDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENL 276
            ED ++LG +P    P +MI  ++P+PPP VRPS          DDLT     +I  NE L
Sbjct: 169  EDVRVLGFDPIDCHPKFMIFTLIPVPPPCVRPSIVSEGAKESKDDLTVLYENVITANERL 228

Query: 277  RRQERNGAPAHIISEFAQLLQFH-IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGR 335
            +  E N     +   + +L++   I      +    P    R  +  KSI  RL +K+GR
Sbjct: 229  K--EENQKCEGVSEYYNKLMELQTICAKISMKNVKLPETMLRK-KNFKSIEERLSSKQGR 285

Query: 336  IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 395
            +R NLMGKRVDFSARTVI+PDP +++D++GVP  +A  LT+PE VT +N E+L++LV  G
Sbjct: 286  LRLNLMGKRVDFSARTVISPDPNLSMDEVGVPTGVAKILTFPEVVTQHNKEKLQKLVSAG 345

Query: 396  PHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHK 455
             +  PG   A  + R +GQ     Y    S+  +++G  V R++ +GD+V+FNRQPSLH+
Sbjct: 346  MNDYPG---AFMLERKNGQT----YRLNGSEKIIDIGDTVHRYIMNGDYVIFNRQPSLHR 398

Query: 456  MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 515
            MS+MGH+++++P+STFR+NL  T+PYNADFDGDEMN+HVPQ+ E RAEV  LM+ P  I+
Sbjct: 399  MSMMGHKVRVLPFSTFRMNLCDTTPYNADFDGDEMNLHVPQTLEARAEVATLMLTPTQII 458

Query: 516  SPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLW 575
            +PQ N P+MGIVQDT  G   ITKR+TFIE+ VF NIL   ++FDG VP P ILKP P W
Sbjct: 459  TPQDNGPIMGIVQDTQCGSYLITKRETFIEQLVFYNILQCLDNFDGTVPIPAILKPIPKW 518

Query: 576  TGKQVFNLIIPKQINLFRTAAWHADNDKGILTAG----DTLVRIEKGELLSGTLCKKT-L 630
            TGKQVF  I+P  IN  R   W     K +L  G    D+ V I  G  L G+L  K+  
Sbjct: 519  TGKQVFTQILP-TINFHR-GNWSI---KELLKNGPAVADSDVYILDGVHLVGSLRNKSEF 573

Query: 631  GTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDT 690
            G +   +I  I+++ G +A + F   TQ  VN W+L   F++G+GD +      ++I   
Sbjct: 574  GKNRSGIIQTIFKDKGMEATKVFFNKTQATVNSWILTRGFTVGVGDIVVPQSVHDSIRAN 633

Query: 691  ISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNN 750
            + K+K      +    D  ++ + G TM E+ E+++  +L   ++E  S   KSL + NN
Sbjct: 634  VEKSKKEAVKFLSHQHDDEIKVQAGNTMFENPESELGSLLEKLKNECDSITTKSLKKDNN 693

Query: 751  LKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVEN 810
            L AMV +GSKGS  NI QM A VG+Q +   RIPFGF  RTLPH+ K+DYG  SRGFVEN
Sbjct: 694  LLAMVDSGSKGSTTNILQMVAFVGKQEINNLRIPFGFYKRTLPHYWKEDYGFVSRGFVEN 753

Query: 811  SYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD 870
            SY+ GL+PQEFFFHAM GR+G+IDTAVKTS+TGYIQR++VK MED+  KYD TVR S GD
Sbjct: 754  SYVMGLSPQEFFFHAMAGRQGIIDTAVKTSDTGYIQRKMVKCMEDVQCKYDRTVRRSSGD 813

Query: 871  VIQFLYGEDGMDSVWIESQTL--------DSLKMKKSEFDKAFRFEMDE-ENWNPN---- 917
            +++F+YG DG+D++  E+Q          D+ +   +++D    F+M+E   W+ N    
Sbjct: 814  MVEFMYGGDGVDALMCETQKYIYCNDSKPDNFEGSINDYDT---FKMNELYKWDLNDEKL 870

Query: 918  -YMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGD---SSWPLPVNLKRLI 973
              +L E I +     E + +FD E Q++  +R +L      S D       + VN  R I
Sbjct: 871  SELLDEDIYNKLFSDEYQTLFDNEFQRILDERAELYQPWRRSLDLKPCDIHIVVNFARQI 930

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPG--EDPLSVEAQKNATLFFNILL 1031
             N      +   + S++ P  V+E  + L + L  +     D    E  K+A   F  LL
Sbjct: 931  DNVIAARYLPKSQRSNLDPKYVIERENALIKELSSIGAVKNDKFDEERFKDALGSFGKLL 990

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLN 1091
              T +SK+ L +H L++E+F+ ++  I++ + +S + PGEM+G +AAQSIG PATQMTLN
Sbjct: 991  HCTLSSKQCLIQHHLSKESFDDLMDRIKNIYERSFINPGEMVGSIAAQSIGAPATQMTLN 1050

Query: 1092 TFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERA----KNVQCAL 1147
            TFH+AG+S+ +VT GVPRL+E++NV+K  KTPS++V+L    N T+E      K +   +
Sbjct: 1051 TFHHAGISSASVTEGVPRLKELLNVSKTPKTPSMNVYL---TNDTRESMVDLDKELNKTI 1107

Query: 1148 EYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNRE 1207
             YT L+ + +  E+W+DPD   ++IEED EF+  + E+  E+I PE    W +R+     
Sbjct: 1108 PYTKLKDLIDNVEIWFDPDIANSVIEEDREFINDFIEV--EEIKPEDYCKWTIRLVFGYN 1165

Query: 1208 MMVDKKLSMAA--VAEKINQEFDDDLTCIFNDDN----ADKLILRIRI----MNDEAPKG 1257
             MV   +   +  +  KI + F D L    + +N      K+++ IR     +++ +   
Sbjct: 1166 KMVSMGVDSDSDILRVKIKELFKDALVIPSDSNNIVNGTVKIVVHIRFRVGSISECSNID 1225

Query: 1258 ELNDE---SAEDDVFLKKIESNMLTEMALRGV---------------------------- 1286
             L DE   S E   + K     +L  + + G+                            
Sbjct: 1226 HLTDEVDKSVEAVAYYKSKLDELLRTVVISGIEGITKVIIPQKPKNAIVVDPETKMLRDQ 1285

Query: 1287 ----------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGS 1336
                      N+  +   ++VD  +T +N++ E    LGIEA R  L  E  ++ +  GS
Sbjct: 1286 LQWVVFTEGSNMAGLAECDNVDFYKTVTNNVYETFLYLGIEAGRTQL--EAELIKTLSGS 1343

Query: 1337 YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYL 1396
            YVN+RHLA++ D MT+ G +    R G++R   G + R S E+T++    AA F+ESD L
Sbjct: 1344 YVNFRHLALMADVMTFTGRIQPFNRMGLSRGRAGVITRASSEQTLEQFRRAAAFSESDIL 1403

Query: 1397 RGVTENIMLGQLAPIGTGDCSLYLNDEMLK------NAI---ELQLPSYMEGLEFGMTPA 1447
             G+++NI++GQ    GTG  ++ L+ + LK      N+    E    ++++G  F ++P 
Sbjct: 1404 NGISQNILMGQRTVAGTGAFTVLLDIDSLKASNIDENSFSEEEADKKAFIDG--FDVSPI 1461

Query: 1448 RSPVSGTPYHDGMMSPGYLFSPNLRLSPV----TDAQF---SPYVGGMAFSPTSSPGYSP 1500
            R+ +  +P +     P   FSP    SPV    T  QF   SP++   + SP SSP    
Sbjct: 1462 RTHLVMSPTNTNKPKP-MGFSP----SPVSPRKTHPQFATPSPFI--TSSSPRSSPMLMQ 1514

Query: 1501 SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSP-TSP 1559
             +P +S S   Y+P +   S  +   SP   G   +SP  +P+   +  ++PA+   +SP
Sbjct: 1515 FTPRFSSSPSPYNPATGALSKPAFLSSPMFAG-KQSSPYNNPNPSPFLGSTPAFQGISSP 1573

Query: 1560 SYSPTSPSYSP 1570
              + +SPS  P
Sbjct: 1574 FINYSSPSIFP 1584


>gi|341859018|gb|AEK97419.1| ribosomal polymerase II largest subunit [Isaria tenuipes]
          Length = 952

 Score =  932 bits (2408), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/978 (49%), Positives = 644/978 (65%), Gaps = 52/978 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A++ R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIRTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLK----KNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERK 209
            D   +D E  +K    +  GGCG  QP++    +++ A ++         E+ P+   RK
Sbjct: 61   D-KNKDEEFGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---RK 110

Query: 210  QT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPPP 254
            +T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +     
Sbjct: 111  ETVNISAEMAHGILRRISERDLHNMGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTGT 170

Query: 255  PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRA 314
              R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPRA
Sbjct: 171  GTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRA 230

Query: 315  TQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNL 374
             Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  L
Sbjct: 231  LQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTL 290

Query: 375  TYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK 434
            TYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+K
Sbjct: 291  TYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGWK 347

Query: 435  VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHV 494
            VERHL                           PYSTFRLNLSVTSPYNADFDGDEMN+HV
Sbjct: 348  VERHLXXXXXXXXXXXXXXXXXXXXXXXXXXXPYSTFRLNLSVTSPYNADFDGDEMNLHV 407

Query: 495  PQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM 554
            PQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K+   N+++
Sbjct: 408  PQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKEFVQNLML 467

Query: 555  WWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGDT 611
            W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L     
Sbjct: 468  WVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPKHDAGLL----- 521

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
               I+ GEL+ G L KK +G ++G +IH+ + E+GP+ A  FL   Q +V YWLL    S
Sbjct: 522  ---IQSGELMYGLLKKKNVGAASGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGHS 578

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDT+ D +T+E +   I + K  V  L  QA    LE  PG  +  +FENKV+  LN
Sbjct: 579  IGIGDTVPDKQTIEKVQAHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMALN 638

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARD+AG+S QKSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  RT
Sbjct: 639  MARDQAGTSTQKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRT 698

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVK
Sbjct: 699  LPHFTKDDYSPEARGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 758

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            A+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F++ +R ++  
Sbjct: 759  ALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSDAAFERQYRLDLAS 818

Query: 912  --ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLPV 967
              E +  +Y   EY ++L   K   ++ D E   L ADR +   +I  S  G+    LP+
Sbjct: 819  PPEWFRKDY---EYGNELAGDKASMELLDMEWDALLADR-RAVRDINKSKMGEEMMQLPL 874

Query: 968  NLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFF 1027
            N+ R+I +A++ F +     S++ P +V+  V  L   +K+V G DP+S+EA  NAT+  
Sbjct: 875  NIGRIIESAKRVFNIRETDRSNLRPSDVITTVQTLLSNMKIVRGNDPISLEADYNATILV 934

Query: 1028 NILLRSTFASKRVLKEHR 1045
              LLRS  A K ++  HR
Sbjct: 935  KALLRSRLAFKEIVYVHR 952


>gi|341858940|gb|AEK97380.1| ribosomal polymerase II largest subunit [Beauveria australis]
          Length = 954

 Score =  931 bits (2407), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/979 (49%), Positives = 641/979 (65%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                            YSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFESQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +++V G DP+SVEA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITTVQNLLANMQIVRGTDPISVEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|149794942|gb|ABR31767.1| RNA polymerase II largest subunit [Phialophora verrucosa]
          Length = 998

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1015 (48%), Positives = 661/1015 (65%), Gaps = 33/1015 (3%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P+FH GFM  V  I+ +VC NC KI A  D+  F+QA+  R+PK R + +    K
Sbjct: 1    IKLATPVFHYGFMNKVKKILETVCHNCGKIKA-LDNADFQQAIATRDPKRRFEAVWRLSK 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQL 202
             +  CE  D  + P Q  + P     GGCG  QP +   G+ + A +K  RK +DD++  
Sbjct: 60   PRNICEA-DPPEDPDQLLKGPAPPKHGGCGNAQPDIRRTGLHLYATWKP-RKGDDDEDTT 117

Query: 203  PEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------ 256
            P+    K+ +  + VL   + +SDE  Q++G+N  YARP+WMIL  LP+PPPPV      
Sbjct: 118  PD----KKRIFPQDVLNTFRTLSDETLQMMGINLDYARPEWMILTALPVPPPPVRPSISI 173

Query: 257  -------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELP 309
                   R  DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DN + 
Sbjct: 174  DGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNXIA 233

Query: 310  GQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWS 369
            G  +A  ++GRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP S
Sbjct: 234  GLDKAQHKTGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 293

Query: 370  IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHL 429
            IA  LT+PE VT  NI++LK LV  GP+  PG   A+Y+IRD G+R+DLR+ K +S+ +L
Sbjct: 294  IARTLTFPERVTQKNIDKLKRLVANGPNEHPG---ARYVIRDSGERIDLRHHKNASEMNL 350

Query: 430  ELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDE 489
            + G+ VERH+ DGD +LFNR                        NLSVT+PYNADFDGDE
Sbjct: 351  QHGWIVERHIQDGDVILFNRXXXXXXXXXXXXXXXXXXXXXXXXNLSVTAPYNADFDGDE 410

Query: 490  MNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVF 549
            MN+HVPQS E+RAE+  L MVP  IVSPQ N P+MGI+QDTL G  KI +RD F+ ++  
Sbjct: 411  MNLHVPQSQESRAELANLCMVPLNIVSPQRNAPLMGIIQDTLCGIYKICRRDIFLTREQV 470

Query: 550  MNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAG 609
            MNI++W  D+DG +PQP I+KP P WTGKQ+ ++++P  +NL R  A   D     + A 
Sbjct: 471  MNIMLWVPDWDGVIPQPAIIKPTPRWTGKQMISMVLPPALNLERLDAKGEDP---YVPAN 527

Query: 610  DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
            DT + + +G L+ G L KK +GT  G +IH I+ E G + A  F    Q +VNYWLL N 
Sbjct: 528  DTGLIVLEGNLMFGVLSKKFVGTGAGGIIHTIYNEFGWETALSFFNGAQTVVNYWLLHNG 587

Query: 670  FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
            FSIGIGDT+ D  T++ I + +   K  V++L K+A+ + LEP PG  + ++FE+K    
Sbjct: 588  FSIGIGDTVPDPDTVQKIQNAVDTKKAEVEDLQKKAEAEDLEPSPGMNVRQTFESKAMNA 647

Query: 730  LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
            LN ARD+AG++ + SL + NN   M  AGSKGS INI+QMTA VGQQ VEGKRIPFGF  
Sbjct: 648  LNQARDQAGAATEDSLKDLNNAITMARAGSKGSTINIAQMTAIVGQQAVEGKRIPFGFKY 707

Query: 790  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 849
            R+LPHFTKDDY   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRL
Sbjct: 708  RSLPHFTKDDYSAPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRL 767

Query: 850  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM 909
            VKA+E++ VKYD TVR+S G+++QF+YGEDG+D   IE+Q +D + M    F+  +  ++
Sbjct: 768  VKALEEVTVKYDSTVRDSRGNIVQFIYGEDGLDGAHIENQKVDIITMSTKAFNDRYHVDI 827

Query: 910  ---DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLP 966
               D   W    +LQ    +++   EL+++FD E   L+  + QL   +    + S  LP
Sbjct: 828  MNGDVSMWK-GRLLQA--KEIQGDVELQEMFDLEFSNLKESQ-QLLRNMGKGTEDSMQLP 883

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I  AQK FK+     +D+ P   + AV++L ERL +V G+DP+S EAQ NATL 
Sbjct: 884  LNIGRIIDQAQKNFKIRRGDKTDLDPRYALTAVNQLLERLVIVRGDDPISKEAQDNATLL 943

Query: 1027 FNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
                LRS  A KR++ EH + R AF+ +IG +ESRF  +  APGEM+G +AAQSI
Sbjct: 944  LKAQLRSRLAYKRLVLEHGVNRLAFDNIIGAVESRFTAANAAPGEMVGVLAAQSI 998


>gi|322510715|gb|ADX06029.1| putative DNA-directed RNA polymerase II [Organic Lake phycodnavirus
            1]
          Length = 1464

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/1475 (36%), Positives = 835/1475 (56%), Gaps = 128/1475 (8%)

Query: 13   AKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            +K+  +QF ILSP+EI + SV +I   +T    KPK GGL DPR+G +D  M C T   N
Sbjct: 6    SKIIGIQFSILSPEEIVRNSVAEITSKDTYNGIKPKIGGLFDPRMGVLDPGMICPTDGEN 65

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPK- 131
               CPG+FGH+ LAKP+F+I +  T+  I++ VCF CSK+L  ++D+     + I N K 
Sbjct: 66   YINCPGYFGHIVLAKPVFYIQYFSTISKILKCVCFKCSKLLISKEDY-----MNILNFKY 120

Query: 132  -NRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK-MIAEY 189
              R       C N            P + GE      K GCG  QPK+  EG   ++AE+
Sbjct: 121  NERWDAFFQICNNLK----------PRRCGEYT----KNGCGCLQPKIKKEGYSTLMAEW 166

Query: 190  KAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL 249
                  N+++E +          T E V+ + K+I++ED   +G + K++RP+WMI Q+ 
Sbjct: 167  T-----NENKETMAIK------YTPEMVIKIFKKITNEDIDFMGFSSKWSRPEWMICQIF 215

Query: 250  PIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERN-GAPAHIISEFAQLLQF 298
             +PPP VRPS          DD+TH +  II+ N +L+ +  +  +   +I ++  LLQ+
Sbjct: 216  AVPPPAVRPSVKQDSQQRSEDDITHIIINIIKFNNSLKEKMSDPDSNNKMIEDWTCLLQY 275

Query: 299  HIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPT 358
            +IAT  DN +PG    TQRSGR +KSI  R K K GR+RGNLMGKRVDFSAR+VITPDP 
Sbjct: 276  YIATLVDNNIPGTSPVTQRSGRALKSITERHKGKTGRVRGNLMGKRVDFSARSVITPDPE 335

Query: 359  INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDL 418
            ++I +LGVP  IA+N+T P  VT  N + L  L++ GP   PG   AK + + + + + L
Sbjct: 336  LSIVELGVPIKIAMNITKPVYVTNENKQYLLYLIKNGPDVYPG---AKILQKKNNENISL 392

Query: 419  RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM-PYSTFRLNLSV 477
            RY+ + +    E G  V RH+ DGD+VLFNRQP+LH+MS+M H +K++    TFR+N++ 
Sbjct: 393  RYVDRGNVSIYE-GDIVHRHMMDGDYVLFNRQPTLHRMSMMAHVVKVLFKGDTFRMNVAD 451

Query: 478  TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
            T PYNADFDGDEMNMH+PQ+ E   E+  L  +P  I+SP +N  ++GI QD+LLG    
Sbjct: 452  TKPYNADFDGDEMNMHMPQNDEAEMELKHLAAIPYQIISPANNNSIIGIFQDSLLGSYLF 511

Query: 538  TKRDTFIEKDVFMNILMWWEDFDGKVPQPTIL--KPRPLWTGKQVFNLIIPKQINLFRTA 595
            T++D  I +   MN+L         +P   I   + +  +T +++ + I+P         
Sbjct: 512  TRKDIQITRKDAMNLLS-----KTIIPNVNIFLDERKQAFTPQELISTILP--------- 557

Query: 596  AWHADNDKGILTAGDT-LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
            A   +  K   +  DT  + IE G +  G + K   G S   LI  I+ +  P   +KF+
Sbjct: 558  AISLNYKKDDESKEDTNHIWIENGVMKKGQIDKGVYGKSGKGLIQRIYNDYSPLHCQKFI 617

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
               Q +V  ++    FS+G+ D ++   T++ +   I + KN V NLI   Q    E + 
Sbjct: 618  DDIQAIVTEYMKTTGFSVGMSDLVSTTTTVDNVKRIIQEKKNKVANLIDDIQQGIFENKS 677

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G +  + FE ++N +LN A  EAG  + K L+ SN    ++T+GSKG+ +N+SQM +C+G
Sbjct: 678  GISNKDYFEGEINNILNEASKEAGDISMKHLNNSNRFVTIITSGSKGNELNMSQMISCLG 737

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQNVE KRIP+ F +RTLPHF + D  P SRGFVE+S++ GL+P+E FFHAMGGR GLID
Sbjct: 738  QQNVENKRIPYSFTNRTLPHFKQFDDNPVSRGFVESSFIEGLSPEELFFHAMGGRVGLID 797

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TAVKTS TGYIQRRL+K +EDI V YD T+RN+   VIQF YG   MD+V+IE+   D  
Sbjct: 798  TAVKTSTTGYIQRRLIKGLEDIQVCYDRTIRNNKNKVIQFSYGSTNMDTVYIENIHFDLF 857

Query: 895  KMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATE 954
                 +    + +++ E+         +   D K I   R   D +    E D Y +   
Sbjct: 858  NKSIEDIMNFYDYKIKEDKVFYTKDAYKLFKDNKKILMERIKKDIKFLIDERDHY-IKYV 916

Query: 955  IATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDP 1014
            +    D++  L V   + I N +  F++D    +D+ P+E+   +D   +          
Sbjct: 917  LEYKSDNTIYLSVPFMQFIQNVKHQFELDKNDVTDISPLEMYTLMDDYLD---------- 966

Query: 1015 LSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIG 1074
             + E        F +  +       ++ +H+  + AF +++ +I  ++ +S+V+PGEM+G
Sbjct: 967  -TFERIYKPCRLFKLAFKYYLNPYVLITKHKYNKGAFMFLLEQIMYKYKKSIVSPGEMVG 1025

Query: 1075 CVAAQSIGEPATQMTLNTFHYAGVSAK-NVTLGVPRLREIINVAKKIKTPSLSVFLKPGV 1133
             ++AQSIGEP TQMTLNTFHYAGV++K NVT GVPR+ E+++++  IK PSL++F+    
Sbjct: 1026 MISAQSIGEPTTQMTLNTFHYAGVASKSNVTRGVPRMEELLSLSNNIKNPSLTIFMNKEH 1085

Query: 1134 NSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD-----E 1188
             + KE+       +E+   + +   +E++Y P    +    D  F++ Y E+ +      
Sbjct: 1086 ETNKEKTYETLTRIEHIKFKDIVNKSEIYYKPLNDTS---NDEPFMEYYNEVSELLMGVS 1142

Query: 1189 DIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
            ++  EK + W++R+ L++++M D  L++  +   +N+ +++ ++C ++D N  +++ +I+
Sbjct: 1143 EMEVEKFNSWVIRLYLDKQLMFDYNLTIQEINFTLNKIYNNTISCYYSDMNEKEIMFKIK 1202

Query: 1249 IMNDEAPKGELNDESAEDDVFL-KKIESNMLTEMALRGV--------------------- 1286
            IM  +       DE+  D+++L K  +  +L  + LRG+                     
Sbjct: 1203 IM--KTLNNVYKDET--DNIYLIKSFQEKILNHIVLRGINNIKKVNIREINNYINYDGEQ 1258

Query: 1287 --------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
                          NL  V+    +D +RT SN++IE+ + LGIEA R+ L +E++ V+ 
Sbjct: 1259 YTKNKIYVLDTIGTNLAEVLTLPFLDYKRTFSNNIIEMRDTLGIEAARKCLFNEIQEVME 1318

Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
            F GSY+N+ H+ +LCD MT    +++I RHGIN +D GP+ + SFEET ++ L AA   E
Sbjct: 1319 FGGSYINHHHIYLLCDRMTTNYEMVSIFRHGINNDDIGPIAKASFEETTEMFLRAARHGE 1378

Query: 1393 SDYLRGVTENIMLGQLAPIGTGDCSLYLN-DEMLK 1426
             D +RGV+ N+M GQ    GT   S+YLN +E+LK
Sbjct: 1379 LDEMRGVSANVMCGQDGYYGTSSFSVYLNMNEVLK 1413


>gi|341858974|gb|AEK97397.1| ribosomal polymerase II largest subunit [Beauveria amorpha]
          Length = 954

 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/979 (49%), Positives = 641/979 (65%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVKKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                            YSTFRLNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSTFRLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAPGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFESQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +++V G DP+S+EA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITTVQTLLANMQIVRGTDPISIEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|226876255|gb|ACO89448.1| RNA polymerase II largest subunit, partial [Chromocleista malachitea]
          Length = 934

 Score =  929 bits (2402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/959 (49%), Positives = 639/959 (66%), Gaps = 51/959 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGG--- 150
            F+  +  ++ +VC NC KI A++ D KF  A+++R+ K R + I  A K+   CE     
Sbjct: 1    FLTKIKKLLETVCHNCGKIKANQADPKFLNAIRMRDAKKRFEGIWKASKDVLVCEADPTP 60

Query: 151  DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
            D+ D   +D ++ L    GGCG  QP +  EG+ ++  +K  + + ++  Q+      K+
Sbjct: 61   DDEDFQKEDRKKHLH---GGCGNAQPVVRKEGITLVGTWKPSKAQIEEGAQI-----EKK 112

Query: 211  TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------- 259
             +T   VL + + IS +D +++GL+  YARP+WM+L VLP+PPP VRPS           
Sbjct: 113  VITPGMVLNIFRNISVQDVRIMGLSNDYARPEWMVLTVLPVPPPTVRPSVMMGATSGSRG 172

Query: 260  -DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRS 318
             DDLT++LA I+R N+N++R E+ GAP H+I EF  LLQ+HIATY DN++ GQP+A Q+ 
Sbjct: 173  EDDLTYKLAEIVRANQNVQRCEQEGAPEHVIREFESLLQYHIATYMDNDIAGQPKAMQKG 232

Query: 319  GRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPE 378
             RP+K++ SRLK KEGR+R NLMGKRVDFSARTVIT DP ++++++GVP+S A  LTYPE
Sbjct: 233  NRPVKALRSRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLEEVGVPYSTAKILTYPE 292

Query: 379  TVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERH 438
             VTPYNIE+L+ LV  GP+  PG   A+YI+RD+G+R+DLR+ K++    L  G+KVERH
Sbjct: 293  VVTPYNIEKLQRLVSNGPNIHPG---ARYIVRDNGERIDLRHAKRAGAQQLLYGWKVERH 349

Query: 439  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
                                   R+++ P+ TFR N SVTSPYNADFDGDEMN+HVPQS 
Sbjct: 350  XX----XXXXXXXXXXXXXXXXXRVRVXPFXTFRXNXSVTSPYNADFDGDEMNLHVPQSE 405

Query: 499  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
            E+RAE+ EL +VPK IVSPQ N P+MGIVQD+L G  K+T+RD F+ KD  MNI++W  +
Sbjct: 406  ESRAELSELALVPKNIVSPQRNGPLMGIVQDSLCGIYKLTRRDVFLSKDQVMNIMLWVPE 465

Query: 559  FDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR--------TAAWHADNDKGILTAGD 610
            +DG +P P ILKPRP WTGKQ+ ++  P  +NL R        +  +   ND G+L  G 
Sbjct: 466  WDGVIPPPAILKPRPRWTGKQMISMAFPSGLNLLRIDKDSSPLSEKFSPLNDGGLLIHG- 524

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                   G+L+ G L KKT+G S G +IH I+ E G D A  F    Q +VNYWLL + F
Sbjct: 525  -------GQLMYGMLSKKTVGASGGGVIHTIFNEYGCDQAVHFFNGAQRIVNYWLLHHGF 577

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDTI D +T+E I + + + K  V+ +   A + +LE  PG  + E+FE+KV++ L
Sbjct: 578  SIGIGDTIPDRRTIEKIEEAVRERKQEVEQITASATENTLEALPGMNVRETFESKVSRAL 637

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N AR EAGS+ +KSL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  R
Sbjct: 638  NNARGEAGSATEKSLKDLNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYR 697

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQR+LV
Sbjct: 698  TLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLV 757

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-M 909
            KA+E++MVKYDGTVRNSLGD+IQF+YGEDG+D   IE+Q +D ++    +  + FR + M
Sbjct: 758  KALEEVMVKYDGTVRNSLGDIIQFIYGEDGLDGAHIENQRVDIIRCSDEKLRERFRIDLM 817

Query: 910  D-EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
            D E    P+ +  E  +++    E++   D E + +  DR  L T +    D    LP+N
Sbjct: 818  DPERTLGPDVL--EQANEIAGDMEVQKYLDEEWEAILKDRAFLRT-VVKEDDEMMQLPIN 874

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFF 1027
            ++R++  A+ TF++     SD+HP EV+  V  L +RL +V G+DP+S EAQ NATL F
Sbjct: 875  IQRILEMARTTFRIREGTISDLHPAEVIPQVQSLLDRLVIVRGDDPISREAQDNATLLF 933


>gi|226876156|gb|ACO89399.1| RNA polymerase II largest subunit, partial [Capronia sp. WUC 15.551]
          Length = 984

 Score =  929 bits (2402), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1008 (48%), Positives = 655/1008 (64%), Gaps = 45/1008 (4%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GFM  V  I+ +VC NC KI A  D+ + + A+ +R+ K R   +    K +  CE    
Sbjct: 2    GFMSKVKKILETVCHNCGKIKA-LDNEELRHAISLRDRKRRFDAVWRLSKPRAICEAD-- 58

Query: 153  IDVPGQDGEEPLKK----NKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
               P +D ++PLK       GGCG  QP +   G+++ A +KA RK  DD++  P+    
Sbjct: 59   ---PPEDPDQPLKGPPQPKHGGCGNAQPDIRRTGLQLWATWKA-RKGEDDEDTTPD---- 110

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------------ 256
            K+ +  +  L   + ++DE  + +GL+  YARP+WMIL  LP+PPPPV            
Sbjct: 111  KKRIFPQDALNTFRTLTDETLEKMGLSLDYARPEWMILSALPVPPPPVRPSISVDGSGQG 170

Query: 257  -RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRAT 315
             R  DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DNE+ G  +A 
Sbjct: 171  QRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNEIAGLDKAQ 230

Query: 316  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 375
             +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LT
Sbjct: 231  HKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLT 290

Query: 376  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 435
            YPE VT +N+++LK LV+ GP+  PG   A+Y+IRD G+R+DLR+ K++ +  L+ G+KV
Sbjct: 291  YPENVTAFNLDKLKHLVKNGPNVHPG---ARYVIRDTGERIDLRHHKRAGEITLQYGWKV 347

Query: 436  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 495
            ERH+ DG                   R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVP
Sbjct: 348  ERHIQDG----XXXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVP 403

Query: 496  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 555
            Q+ E+RAE+  L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ +D  MNI++W
Sbjct: 404  QNEESRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTRDQVMNIMLW 463

Query: 556  WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRI 615
              D+DG +PQP ++KPRP WTGKQ+ ++++P  +NL R  A   D     + + DT + +
Sbjct: 464  VPDWDGVIPQPAVIKPRPRWTGKQMISMVLPNALNLERLDAKGEDP---YVPSHDTGLMV 520

Query: 616  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 675
             +G L+ G   KK +GTS G +IH I+ E G +AA  F    Q +VNYWLL N FSIGIG
Sbjct: 521  LEGNLMFGLFSKKFVGTSAGGIIHTIYNEFGHEAAMAFFNGAQTVVNYWLLHNGFSIGIG 580

Query: 676  DTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARD 735
            DT+ D  T++ I + +   K +V+ L   A  + LEP PG  + ++FE+KV   LN ARD
Sbjct: 581  DTVPDPDTVQKIQEAVDARKRDVEQLTIAAYKEDLEPAPGMNVRQTFESKVMNFLNQARD 640

Query: 736  EAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 795
            +AG++ + SL + NN   M  AGSKGS INI+QMTA VGQQ VEGKRIPFGF  RTLPHF
Sbjct: 641  QAGAATENSLKDLNNAITMARAGSKGSTINIAQMTAIVGQQAVEGKRIPFGFKYRTLPHF 700

Query: 796  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 855
             KDDY P SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E+
Sbjct: 701  AKDDYSPPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEE 760

Query: 856  IMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM---DEE 912
            + VKYD TVR+S G+V+QF+YGEDG D   IE+Q +D + M    F+  F  ++   D  
Sbjct: 761  VTVKYDSTVRDSRGNVVQFIYGEDGXDGGHIENQKVDIITMSDKAFNDRFSVDIMSGDIS 820

Query: 913  NWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRL 972
             W    +      +L+   EL+++FD E++ L   R     ++    + S  LP+N+ R+
Sbjct: 821  MWRGKLIQAR---ELQGDTELQEMFDEELEALRESR-DFLRKMGKGTEDSMQLPLNIARI 876

Query: 973  IWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 1032
            I  AQK FK+     +D+ P   + AV +L +RL VV G+DP+S EAQ NA L     LR
Sbjct: 877  IDQAQKNFKIRRGDKTDLDPRHALTAVQQLLDRLVVVRGDDPISQEAQSNAALLLKAQLR 936

Query: 1033 STFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            S  A KR++ EH L R AF+ VIG +ESRF+ +   PGEM+G +AAQS
Sbjct: 937  SRLAYKRLVLEHGLDRLAFDNVIGSVESRFIAAAANPGEMVGVLAAQS 984


>gi|226876172|gb|ACO89407.1| RNA polymerase II largest subunit, partial [Cladophialophora
            minourae]
          Length = 983

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1009 (48%), Positives = 653/1009 (64%), Gaps = 47/1009 (4%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GFM  V  I+ +VC NC KI A  D  +F+ A+ IR+ K R   +    K +  CE  D 
Sbjct: 1    GFMNKVKKILETVCHNCGKIKA-LDTEEFRHAISIRDRKRRFDAVWRLSKPRNVCEA-DP 58

Query: 153  IDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTL 212
            I+ P Q  + P +   GGCG  QP +   G+++ A +K  RK  +D++  P+    K+ +
Sbjct: 59   IEDPDQPLKGPPQPKHGGCGNAQPDIRRTGLQLWATWKP-RKGEEDEDVTPD----KKRI 113

Query: 213  TAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV-------------RPS 259
              +  L   + +SDE   ++GL+  YARP+WMIL  LP+PPPPV             R  
Sbjct: 114  FPQDALNTFRTLSDETLDMMGLSLDYARPEWMILSALPVPPPPVRPSISVDGSGQGQRGE 173

Query: 260  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
            DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DNE+ G  +A  +SG
Sbjct: 174  DDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNEIAGLDKAQHKSG 233

Query: 320  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
            RPIKSI +RLK KE R+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPE 
Sbjct: 234  RPIKSIRARLKGKENRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPER 293

Query: 380  VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHL 439
            VTP+ I+RL+ LV  GP+  PG   A+Y+IRD G+R+DLR+ K++ +  L+ G+ VERH+
Sbjct: 294  VTPFTIDRLRRLVRNGPNDHPG---ARYVIRDTGERIDLRHHKRAGEMTLQYGWIVERHI 350

Query: 440  NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 499
             DGD                  R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E
Sbjct: 351  QDGDVX----XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEE 406

Query: 500  TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 559
            +RAE+  L MVP  IVSPQ N P+MGI+QDTL G  KI +RD F+ +D  MN+++W  D+
Sbjct: 407  SRAELANLCMVPLNIVSPQRNAPLMGIIQDTLCGIYKICRRDVFLTRDQVMNVMLWVPDW 466

Query: 560  DGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD-----NDKGILTAGDTLVR 614
            DG +PQP I+KP P WTGKQ+ ++++P  +NL R  A   D     ND G++        
Sbjct: 467  DGVIPQPAIIKPTPRWTGKQMISMVLPPALNLERLDAKGEDPYVPTNDTGLM-------- 518

Query: 615  IEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGI 674
            + +G L+ G   KK +GTS G +IH I  E G D AR F    Q +VNYWLL N FSIGI
Sbjct: 519  VLEGSLMFGLFSKKFVGTSAGGIIHTIVNEFGHDTARAFFNGAQTVVNYWLLHNGFSIGI 578

Query: 675  GDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR 734
            GDT+ D  T++ I D +   K  V  + K+A ++ LEP PG  + ++FE+KV   LN AR
Sbjct: 579  GDTVPDPDTVQKIQDAVDTKKAEVDEITKKAYNEELEPSPGMNVRQTFESKVMNSLNQAR 638

Query: 735  DEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPH 794
            D+AG++ + SL + NN   M  AGSKGS INI+QMTA VGQQ VEGKRIPFGF  RTLPH
Sbjct: 639  DQAGAATENSLKDLNNAITMARAGSKGSTINIAQMTAIVGQQAVEGKRIPFGFKYRTLPH 698

Query: 795  FTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAME 854
            F KDDY   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E
Sbjct: 699  FAKDDYSAPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALE 758

Query: 855  DIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM---DE 911
            ++ VKYD TVR+S G+V+QF+YGEDG+D   IE+Q +D + M    F+  +  ++   D 
Sbjct: 759  EVTVKYDSTVRDSRGNVVQFIYGEDGLDGAHIENQKVDIITMSDKAFNDRYMVDIMSGDI 818

Query: 912  ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
              W    +LQ    +L+   EL+++FD E + L   +     ++    + S  LP+N+ R
Sbjct: 819  SMWK-GRLLQAR--ELQGDTELQEMFDEEYEALRKSQ-DFLRKMGKGTEDSMQLPLNIGR 874

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            +I  AQK FK+     +D+ P   + AV +L ERL +V GEDP+S EAQ NATL     L
Sbjct: 875  IIDQAQKNFKIRRGDKTDLDPRHALNAVKQLLERLIIVRGEDPISKEAQDNATLLLKAQL 934

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            RS  A KR++ EH + R AF+ ++G +ESRF+ +   PGEM+G +AAQS
Sbjct: 935  RSRLAYKRLVLEHGVNRLAFDNIVGAVESRFIAAHANPGEMVGVLAAQS 983


>gi|31127046|gb|AAC03136.3| RNA polymerase II largest subunit [Limulus polyphemus]
          Length = 778

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/781 (58%), Positives = 571/781 (73%), Gaps = 7/781 (0%)

Query: 460  GHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQS 519
            GHRIK++P+STFRLNLSVT+PYNADFDGDEMN+HVPQS ETRAE+ +L MV + I++PQS
Sbjct: 1    GHRIKVLPWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLETRAEIEQLAMVSRNIITPQS 60

Query: 520  NRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQ 579
            N+PVMGIVQDTL   RK+T+RD F+EKD  MN+LM+   +DGK+P P ILKP+PLWTGKQ
Sbjct: 61   NKPVMGIVQDTLTAVRKMTRRDVFLEKDQMMNLLMYLPIWDGKMPMPAILKPKPLWTGKQ 120

Query: 580  VFNLIIPKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTG 635
            +F+LIIP  INL RT + H D  D G    ++ GDT V IE GEL+SG +CKKT+G S+G
Sbjct: 121  LFSLIIPPNINLIRTHSTHPDEEDDGPYKWISPGDTKVLIEHGELISGIVCKKTVGASSG 180

Query: 636  SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAK 695
            SL+HV++ E+G + + +F GH Q +VN WLL    +IGIGDTIAD +T   I +TI KAK
Sbjct: 181  SLMHVVFNELGHEVSGQFYGHIQTVVNNWLLLEGHTIGIGDTIADPQTYIEIQNTIKKAK 240

Query: 696  NNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMV 755
             +V  +I++A +  LEP PG T+ ++FEN+VN++LN ARD+ G+SAQKSLSE NN KAMV
Sbjct: 241  QDVIEVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGASAQKSLSEFNNFKAMV 300

Query: 756  TAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRG 815
             +G+KGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL G
Sbjct: 301  VSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAG 360

Query: 816  LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 875
            LTP EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +M  YDGTVRNS G VIQ  
Sbjct: 361  LTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMATYDGTVRNSTGQVIQLK 420

Query: 876  YGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRD 935
            YGEDG+D   +E Q+L +LK     F+K FRF    E +      ++ + DL        
Sbjct: 421  YGEDGLDGTAVEVQSLPTLKPSDKAFEKKFRFNASNERYLRRIFTEDVVRDLMGSATALS 480

Query: 936  VFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEV 995
              + E +KL+ DR +L   I  +GDS   LP NL+R+IW+AQK F V+ R P+D+ P++V
Sbjct: 481  ELEKEWEKLKHDR-ELLRAIFPTGDSKVVLPCNLQRMIWSAQKIFHVNQRAPTDLSPLKV 539

Query: 996  VEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVI 1055
            +  V++L ++L VVPGED LS++A  NAT+ F  LLRST  +KRV +E RL+ E+F+W++
Sbjct: 540  IGGVEELVKKLVVVPGEDRLSIQANDNATILFRALLRSTLCAKRVAEEFRLSSESFQWLL 599

Query: 1056 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1115
            GEIE+RF Q+ V P                          AGVSAKNVTLGVPRL+EIIN
Sbjct: 600  GEIEARFQQAQVQPXXXXXXXXXXXXXXXXXXXXXXXXXXAGVSAKNVTLGVPRLKEIIN 659

Query: 1116 VAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEED 1175
            ++KK KTPSL+VFL        E+AK+V C LE+TTLR VT  T ++YDPDP  T+I ED
Sbjct: 660  ISKKPKTPSLTVFLTGSAARDAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPQNTVIVED 719

Query: 1176 VEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIF 1235
             EFV  YYEMPD D  P +ISPWLLRIEL+R+ M DKKL+M  +AEKIN  F DDL CIF
Sbjct: 720  QEFVNVYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIF 777

Query: 1236 N 1236
            N
Sbjct: 778  N 778


>gi|226876170|gb|ACO89406.1| RNA polymerase II largest subunit, partial [Cladophialophora
            carrionii]
          Length = 983

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1013 (48%), Positives = 660/1013 (65%), Gaps = 55/1013 (5%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GFM  V  I+ +VC NC KI A  D+  F+QA+  R+PK R + +    K +  CE    
Sbjct: 1    GFMNKVKKILETVCHNCGKIKA-LDNADFQQAIATRDPKRRFEAVWRLSKPRNICEAD-- 57

Query: 153  IDVPGQDGEE----PLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
               P +D ++    P     GGCG  QP +   G+ + A +K  RK +DD++  P+    
Sbjct: 58   ---PPEDADQLSKGPAPPKHGGCGNAQPDIRRTGLHLYATWKP-RKGDDDEDTTPD---- 109

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------------ 256
            K+ +  + VL   + ++DE  Q++G+N  YARP+WMIL  LP+PPPPV            
Sbjct: 110  KKRIFPQDVLNTFRTLTDETLQMMGINLDYARPEWMILTALPVPPPPVRPSISVDGSGQG 169

Query: 257  -RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRAT 315
             R  DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DNE+ G  +A 
Sbjct: 170  QRGEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNEIAGLDKAQ 229

Query: 316  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 375
             +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LT
Sbjct: 230  HKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLT 289

Query: 376  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 435
            +PE VT  NI++LK LV  GP+  PG   A+Y+IRD G+R+DLR+ K +S+ +L+ G+ V
Sbjct: 290  FPERVTQKNIDKLKRLVANGPNEHPG---ARYVIRDSGERIDLRHHKNASEMNLQHGWIV 346

Query: 436  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 495
            ERH+ DG                   R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVP
Sbjct: 347  ERHIQDG----XXXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTAPYNADFDGDEMNLHVP 402

Query: 496  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 555
            QS E+RAE+  L MVP  IVSPQ N P+MGI+QDTL G  KI +RD F+ ++  MNI++W
Sbjct: 403  QSQESRAELANLCMVPLNIVSPQRNAPLMGIIQDTLCGIYKICRRDIFLTREQVMNIMLW 462

Query: 556  WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD-----NDKGILTAGD 610
              D+DG +PQP I+KP P WTGKQ+ ++++P  +NL R  A   D     ND G++    
Sbjct: 463  VPDWDGVIPQPAIIKPTPRWTGKQMISMVLPPALNLERLDAKGEDPYVPTNDTGLI---- 518

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                + +G L+ G L KK +GT  G +IH I+ E G + A  F    Q +VNYWLL N F
Sbjct: 519  ----VLEGNLMFGVLSKKFVGTGAGGIIHTIYNEFGWETALSFFNGAQTVVNYWLLHNGF 574

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T++ I D +   K  V++L K+A+ + LEP PG  + ++FE+K    L
Sbjct: 575  SIGIGDTVPDPDTVQKIQDAVDTKKAEVEDLQKKAEAEDLEPSPGMNVRQTFESKAMNAL 634

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG++ + SL + NN   M  AGSKGS INI+QMTA VGQQ VEGKRIPFGF  R
Sbjct: 635  NQARDQAGAATEDSLKDLNNAITMARAGSKGSTINIAQMTAIVGQQAVEGKRIPFGFKYR 694

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            +LPHFTKDDY   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 695  SLPHFTKDDYSAPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 754

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM- 909
            KA+E++ VKYD TVR+S G+++QF+YGEDG+D   IE+Q +D + M    F+  +  ++ 
Sbjct: 755  KALEEVTVKYDSTVRDSRGNIVQFIYGEDGLDGAHIENQKVDIITMSTKAFNDRYLVDIM 814

Query: 910  --DEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPV 967
              D   W    +LQ    +++   EL+++FD E   L+A + QL   +    + S  LP+
Sbjct: 815  SGDVSMWK-GRLLQAR--EIQGDVELQEMFDLEFANLKASQ-QLLRNMGKGTEDSMQLPL 870

Query: 968  NLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFF 1027
            N+ R+I  AQK FK+     +D+ P   + AV++L +RL +V G+DP+S EAQ NATL  
Sbjct: 871  NIGRIIDQAQKNFKIRRGDKTDLDPRYALTAVNQLLDRLVIVRGDDPISKEAQDNATLLL 930

Query: 1028 NILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
               LRS  A KR++ EH + R AF+ +IG +ESRF  +  APGEM+G +AAQS
Sbjct: 931  KAQLRSRLAYKRLVLEHGVNRLAFDNIIGAVESRFTAANAAPGEMVGVLAAQS 983


>gi|322511128|gb|ADX06441.1| putative DNA-dependent RNA polymerase II [Organic Lake phycodnavirus
            2]
          Length = 1478

 Score =  929 bits (2400), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 542/1475 (36%), Positives = 835/1475 (56%), Gaps = 131/1475 (8%)

Query: 13   AKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
            +K+  +QF ILSPDEI + SV +I   +T    KPK GGL DPR+G +D  M C T   N
Sbjct: 9    SKIIGIQFSILSPDEIVRNSVAEITSKDTYNGMKPKIGGLFDPRMGVLDPGMICPTDGQN 68

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKN 132
              +CPG+FGH+ LAKP+F+I +   +  I++ +CF CSK+L  ++ +K+   L   + + 
Sbjct: 69   YIQCPGYFGHIVLAKPVFYIQYFNVIQKILKCICFKCSKLLISKEVYKY--VLNYSHNE- 125

Query: 133  RLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEG-MKMIAEYKA 191
            R       C N            P + GE      + GCG  QPK+  EG   + AE+  
Sbjct: 126  RWDNFYQICNNLK----------PSRCGEHT----QNGCGCLQPKIKKEGYCTLHAEWT- 170

Query: 192  QRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPI 251
                NDD+E +          T E V  + K+I+DED   +G +PK++RP+WMI Q+  +
Sbjct: 171  ----NDDKEVITIK------YTPELVTKIFKKITDEDIDFMGFSPKWSRPEWMICQIFAV 220

Query: 252  PPPPVRPS----------DDLTHQLAMIIRHNENLRRQERN-GAPAHIISEFAQLLQFHI 300
            PPP VRPS          DD+TH +  II+ N +LR +  +  +   II ++  LLQ++I
Sbjct: 221  PPPSVRPSVKQDSQQRSEDDITHIIINIIKFNNSLREKINDPESNNKIIEDWTSLLQYYI 280

Query: 301  ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTIN 360
            AT  DN +PG    TQRSGR +KSI  R K K GR+RGNLMGKRVDFSAR+VITPDP ++
Sbjct: 281  ATLVDNNIPGTSPVTQRSGRALKSITERHKGKTGRVRGNLMGKRVDFSARSVITPDPELS 340

Query: 361  IDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRY 420
            I +LGVP  IA+N+T P  V   N   L  L++ GP   PG   AK + + +G+ + LRY
Sbjct: 341  IAELGVPLKIAMNITKPIYVNDENKNYLLYLIKNGPDTYPG---AKILEKKNGENISLRY 397

Query: 421  LKKSSDHHLEL--GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS-TFRLNLSV 477
            + +    H+ +  G KV RH+ DGD+VLFNRQP+LH+MS+M H +K++    TFR+N++ 
Sbjct: 398  VDRE---HIMIYEGDKVHRHMLDGDYVLFNRQPTLHRMSMMAHIVKVLNKGDTFRMNVAD 454

Query: 478  TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
            T PYNADFDGDEMNMH+PQ+ E   E+  L  +P  IVSP +N  ++GI QD+LLG   +
Sbjct: 455  TKPYNADFDGDEMNMHMPQNDEAEMELKYLAAIPYQIVSPANNNSIIGIFQDSLLGSYLL 514

Query: 538  TKRDTFIEKDVFMNILMWWEDFDGKVPQPTIL----KPRPLWTGKQVFNLIIPKQINLFR 593
            TK +    +   MN++        K  QP +     K +  +T  ++ + I+P  I+L  
Sbjct: 515  TKPNIIFSRKEAMNLI-------AKTIQPDLSIFKDKSKNTFTSHELISTILP-NISL-- 564

Query: 594  TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
               +  D+++   T     + I+ G ++SG + K   G +   LI  I+ +  P   + F
Sbjct: 565  --NYKKDDER---TDSSNHIHIQNGTMMSGQIDKGVYGKAGKGLIQRIYNDYSPLHCQYF 619

Query: 654  LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
            L   Q +V  ++    FS+G+ D IA   T   +   I + KN V NLI   Q      +
Sbjct: 620  LDDIQAIVTEYMKTTGFSVGMSDLIATDDTTRNVKTIILEKKNKVANLIDDIQQGIFVNK 679

Query: 714  PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
             G +  E FE++VN +LN A  E+G  + K L  SN    ++T GSKG+ +N+SQM +C+
Sbjct: 680  SGLSNKEYFESEVNNILNEASKESGDISMKHLDPSNRFVTIITCGSKGNELNMSQMISCL 739

Query: 774  GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
            GQQNVE KRIP+ F +RTLPH+ + D  P SRGFVE+S++ GL P+E FFHA+GGR GLI
Sbjct: 740  GQQNVENKRIPYSFTNRTLPHYQQFDDNPVSRGFVESSFIEGLRPEELFFHAIGGRIGLI 799

Query: 834  DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDS 893
            DTAVKTS TGYIQRRL+K +EDI V YD T+RN+   +IQF YG   MD+V +E+   D 
Sbjct: 800  DTAVKTSTTGYIQRRLIKGLEDIQVCYDRTIRNNKNKIIQFSYGSTNMDTVHMENMKCDL 859

Query: 894  LKMKKSEFDKAFRFEMDEENWNPNYM----LQEYIDDLKTIKELRDVFDAEVQKLEADRY 949
             +    +  + + +++D++ +N  Y     L+E++D++  + E R   D E    + D Y
Sbjct: 860  FEKSTQKIYELYDYKVDDKKYNKLYFTANALKEFMDNIPPLLE-RVKKDVEFLVNQRDEY 918

Query: 950  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV 1009
             +   +  + D +    V   ++I N +  F +     S++ P+E+ + +D+    L   
Sbjct: 919  -IQYVLEYNSDETIYSSVPFLQIIQNVKHQFHLTNTSVSNISPLEMYDIIDEYYNNL--- 974

Query: 1010 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1069
                    E   N    F+++         ++ +H+  ++A  +++ +I  ++ +SLV P
Sbjct: 975  --------ENIYNPCRLFHLIYYYYLNPFILIYKHKYNKDALLFLLEQITYKYKKSLVNP 1026

Query: 1070 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK-NVTLGVPRLREIINVAKKIKTPSLSVF 1128
            GEM+G ++AQSIGEP TQMTLNTFHYAGV++K NVT GVPR+ E++++ + IK PSL++F
Sbjct: 1027 GEMVGMISAQSIGEPTTQMTLNTFHYAGVASKSNVTRGVPRMEELLSLTQNIKNPSLTIF 1086

Query: 1129 LKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPD- 1187
            + P   + K++  ++   +E+   + +    E+ Y P+      EE   F++ Y E+   
Sbjct: 1087 MHPENETDKDKTIDILNRVEHIKFKDIVNKCEIHYKPNNDYDKKEE--SFMEYYNEVEQI 1144

Query: 1188 ----EDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIF-NDDNADK 1242
                 +   +K + W+L I+L+ + M  + +++  +   +NQ +  D+ C + N+D  + 
Sbjct: 1145 LKGVSECGEDKYNSWILNIDLDSKAMFYRNITIQEIHFTMNQIYKKDIQCYYSNEDKIES 1204

Query: 1243 LILRIRIMNDEAPKGELNDESAEDDVFL-KKIESNMLTEMALRGV--------------- 1286
             I+    +  E      N +  +D+++L K  +  +L ++ LRG+               
Sbjct: 1205 QIVLKIKLKKEKELSS-NYKGEDDNIYLVKSFQEKLLNQIVLRGINKIQKVNLREINKYM 1263

Query: 1287 --------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDE 1326
                                NL  V+  + +D +RT SN++ E++EVLGIEA R+ L +E
Sbjct: 1264 NYDGSLYTKNKIYVLDTVGSNLAEVLTLDFIDYKRTYSNNISEMLEVLGIEAARKCLFNE 1323

Query: 1327 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1386
            ++ V+ F G+Y+N+ H+++LCD MT    +++I RHGIN +D GP+ + SFEET ++ L 
Sbjct: 1324 IKEVMEFGGTYINHHHISLLCDRMTTNHKMVSIFRHGINNDDIGPIAKASFEETTEMFLR 1383

Query: 1387 AAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLN 1421
            AA   E D +RGV+ N+M GQ    GT   S+YLN
Sbjct: 1384 AAKHGELDQMRGVSANVMCGQDGYYGTSSFSVYLN 1418


>gi|226876221|gb|ACO89431.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
            TRN475]
          Length = 972

 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/1001 (48%), Positives = 637/1001 (63%), Gaps = 57/1001 (5%)

Query: 101  IMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDG 160
            I+ +VC NC KI A  D  + + ALK R+PK R   I    + K  CE       P +D 
Sbjct: 2    ILETVCHNCGKIKA-TDSEELRVALKSRDPKRRFDAIHKLSRTKFICEAD-----PPEDA 55

Query: 161  EEPLK------KNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTA 214
            E             GGCG  QPK+   G+++ A + A RK  D+++   E    K+ +  
Sbjct: 56   EAGFNPKGVPAVKHGGCGNAQPKIRRTGLQLWAVWDA-RKGEDEEDTTAE----KKRIFP 110

Query: 215  ERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS-------------DD 261
            +  L   + ++DE    +GLN K+A P+WMIL  LP+PPP VRPS             DD
Sbjct: 111  QDALNTFRTLTDETIATMGLNAKFAHPEWMILSALPVPPPAVRPSISVDGSGQGSRGEDD 170

Query: 262  LTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 321
            LT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DN++ G  +A  +SGRP
Sbjct: 171  LTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNDIAGLDKAQHKSGRP 230

Query: 322  IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 381
            IKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPETVT
Sbjct: 231  IKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVT 290

Query: 382  PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 441
            P+NI++L  LV  GP   PG   A+Y+IRD G+R+DLR+ K++ +  L+ G+KVERH+ D
Sbjct: 291  PFNIQKLARLVANGPTEHPG---ARYVIRDTGERIDLRHHKRAGEMTLQYGWKVERHIQD 347

Query: 442  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 501
            GD                  R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E+R
Sbjct: 348  GDVX----XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSEESR 403

Query: 502  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 561
            AE+  L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++  MNI++W  D+DG
Sbjct: 404  AELANLCMVPLNIVSPQRNGPLMGIVQDTLAGIYKICRRDVFLNREQVMNIMLWVPDWDG 463

Query: 562  KVPQPTILKPRPLWTGKQVFNLIIPKQINLFR-----TAAWHADNDKGILTAGDTLVRIE 616
             +P P I KPRP WTGKQ+ ++++PK +NL R     T  W    D G+L        + 
Sbjct: 464  VIPNPAIFKPRPRWTGKQMISMVLPKNLNLERLDGKGTDGWCPPIDNGLL--------VL 515

Query: 617  KGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD 676
             G L+ G   KK +GTS+G +IH I+ E G +AA  F    Q ++ YWLL N FSIGIGD
Sbjct: 516  DGNLMFGLFNKKFVGTSSGGIIHTIFNEFGHEAAMGFFNGAQTVIGYWLLHNGFSIGIGD 575

Query: 677  TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDE 736
            T+ DA T++ I D ++  KN V  +   A++++LE  PG  + E+FE+KV   LN ARD+
Sbjct: 576  TVPDAVTVQKIEDEVTSRKNEVAKITMDAEEETLEALPGMNVRETFESKVQAELNGARDK 635

Query: 737  AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFT 796
            AG++ ++SL + NN   M  AGSKGS INI+QMTA VGQQ VEGKRIPFGF  R+LPHF 
Sbjct: 636  AGTATEQSLKDLNNAIQMARAGSKGSTINIAQMTAIVGQQAVEGKRIPFGFNYRSLPHFA 695

Query: 797  KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDI 856
            KDDY P SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E++
Sbjct: 696  KDDYSPPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEV 755

Query: 857  MVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM---DEEN 913
             VKYDGTVR+S G+V QF+YGEDG+D   IE+Q +D++ M    F   F  ++   D   
Sbjct: 756  TVKYDGTVRDSKGNVTQFIYGEDGLDGAHIENQKVDTITMSDKAFAARFSVDLMTGDTST 815

Query: 914  WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLI 973
            W   +   + +       +L+ +FD E ++L ADR Q    +    + S  LP+N+ R+I
Sbjct: 816  WRRRFSKAKQV---LGNSDLQQLFDDEFEQLSADR-QFLRSMGNGTEESMQLPLNVARII 871

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
              AQK F +     +D+ P   + AV  + +RL VV GED  S EAQ NAT+     LRS
Sbjct: 872  DQAQKKFNIRSGDQTDLDPEYAIPAVQAMLDRLIVVRGEDVTSREAQHNATILLKAQLRS 931

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIG 1074
              A +R++ +H L + AF+ V+  I  RF+ +   PGE++G
Sbjct: 932  RLAFRRIVVDHSLNKLAFDNVLNNIXQRFIAAHANPGEVVG 972


>gi|226876229|gb|ACO89435.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
            TRN497]
          Length = 990

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1008 (49%), Positives = 658/1008 (65%), Gaps = 38/1008 (3%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GFM  V  I+ +VC NC KI A  D  +F+ A+ +R+ K R   +    K +  CE  D 
Sbjct: 1    GFMTKVKKILETVCHNCGKIKA-LDTEEFRHAISLRDRKRRFDAVWRLSKPRLICEA-DP 58

Query: 153  IDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTL 212
             + P Q  + P +   GGCG  QP++   G+++ A +K  RK +DD++  P+    K+ +
Sbjct: 59   PEEPDQLVKGPPQPKHGGCGNAQPEIRRTGLQLWATWKP-RKGDDDEDITPD----KKRI 113

Query: 213  TAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV-------------RPS 259
              +  L   + ++DE  +++GL+  YARP+WMIL  LP+PPPPV             R  
Sbjct: 114  FPQDALNTFRTLTDETLEMMGLSLDYARPEWMILSALPVPPPPVRPSISVDGSGQGQRGE 173

Query: 260  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
            DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DNE+ G  +A  +SG
Sbjct: 174  DDLTFKLGDIIRANQAVLRTEVDGTPDHIKIDLCDLLQYHIATYMDNEIAGLEKAQHKSG 233

Query: 320  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
            RPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPET
Sbjct: 234  RPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 293

Query: 380  VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHL 439
            VTP+N+++LK LV  GP+  PG   A+Y+IRD G+R+DLR+ K++ +  L+ G+KVERH+
Sbjct: 294  VTPFNLDKLKRLVANGPNEHPG---ARYVIRDTGERIDLRHHKRAGEMTLQYGWKVERHI 350

Query: 440  NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 499
             DGD                  R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQ+ E
Sbjct: 351  QDGDVX----XXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQNEE 406

Query: 500  TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 559
            +RAE+  L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ +D  MN++MW  D+
Sbjct: 407  SRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLTRDQVMNVMMWVPDW 466

Query: 560  DGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAA----WHADNDKGILTAGDTLVRI 615
            DG +PQP I+KP P WTGKQ+ ++++PK +NL R  A    +    D+ +    DT + +
Sbjct: 467  DGVIPQPAIIKPTPRWTGKQMISMVLPKALNLERMEAKGEAFKDLKDQTLSPINDTGLMV 526

Query: 616  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 675
             +G L+ G   KK +GTS G +IH I+ E G +AA  F    Q +VNYWLL   FSIGIG
Sbjct: 527  LEGNLMFGLFSKKFVGTSAGGIIHTIFNEFGHEAAMAFFNGAQTVVNYWLLHVGFSIGIG 586

Query: 676  DTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARD 735
            DT+ D  T+  I + +   K +V  L   A  + LE  PG  + ++FE+KV   LN ARD
Sbjct: 587  DTVPDPDTVRKIQEAVDDRKADVDQLTVAAYKEDLEAAPGMNVRQTFESKVMNFLNQARD 646

Query: 736  EAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 795
            +AG++ + SL + NN   M  AGSKGS INI+QMTA VGQQ VEGKRIPFGF  RTLPHF
Sbjct: 647  QAGTATENSLKDLNNAIQMARAGSKGSTINIAQMTAIVGQQAVEGKRIPFGFKYRTLPHF 706

Query: 796  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 855
             KDDY   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E+
Sbjct: 707  AKDDYSAPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEE 766

Query: 856  IMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM---DEE 912
            + VKYD TVR+S G+++QFLYGEDG+D   IE+Q +D + M    F   F  ++   D  
Sbjct: 767  VTVKYDTTVRDSRGNIVQFLYGEDGLDGGHIENQKVDIITMSDEAFMNRFSVDIMSGDTS 826

Query: 913  NWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRL 972
             W    +LQ    +++   E++++FD E++ L   R +    +    + ++ LP+N+ R+
Sbjct: 827  VWRGK-LLQAR--EIQGDTEIQEMFDEELEALRESR-EFLRRMGKGTEDNFQLPLNIARI 882

Query: 973  IWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 1032
            I  AQK FK+     +D+ P   + +V +L +RL VV GED +S EAQ NATL F   LR
Sbjct: 883  IDQAQKNFKIRRGDKTDLDPRYALTSVKQLLDRLIVVRGEDAISKEAQSNATLLFKAQLR 942

Query: 1033 STFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            S  A KR++ EH L R AF+ VIG IESRF+ +   PGEM+G +AAQS
Sbjct: 943  SRLAYKRLVLEHGLNRLAFDNVIGGIESRFIAAHANPGEMVGVLAAQS 990


>gi|116874718|emb|CAJ75797.1| RNA polymerase I subunit B [Geosiphon pyriformis]
          Length = 649

 Score =  923 bits (2386), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/652 (68%), Positives = 534/652 (81%), Gaps = 13/652 (1%)

Query: 240 RPDWMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
           RPDWMI+ VLP+PPPPV          R  DDLTH+L+ I++ N+N+RR E  G+P H+I
Sbjct: 1   RPDWMIITVLPVPPPPVRPSIQMDGTSRGEDDLTHKLSDILKANQNVRRFESEGSPVHVI 60

Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
           SEF  LLQFH ATY DNE+ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSA
Sbjct: 61  SEFEDLLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSA 120

Query: 350 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
           RTVIT DP I++D++GVP SIA NLTYPE VTPYNIE L+ELV  GP   PG   AKY+I
Sbjct: 121 RTVITGDPNISVDEVGVPRSIARNLTYPELVTPYNIEHLQELVRNGPTEHPG---AKYVI 177

Query: 410 RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
           RD G+R+DL++ K++ +  L+ G+KVERHLNDGD V+FNRQPSLHKMS+MGH++++MPYS
Sbjct: 178 RDTGERIDLKHHKRAGEVRLQYGWKVERHLNDGDVVIFNRQPSLHKMSMMGHKVRVMPYS 237

Query: 470 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
           TFRLNLSVTSPYNADFDGDEMNMHVPQS ETRAE+ E+ MVPK IVSPQSN+PVMGIVQD
Sbjct: 238 TFRLNLSVTSPYNADFDGDEMNMHVPQSVETRAEITEICMVPKQIVSPQSNKPVMGIVQD 297

Query: 530 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
           TL   RK TKRD F+ +D+ MNILMW  ++DG++P+P I+KP P+WTGKQ+ +LIIPK I
Sbjct: 298 TLCAVRKFTKRDCFLSRDLVMNILMWVPEWDGRIPRPCIIKPIPMWTGKQILSLIIPKGI 357

Query: 590 NLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
           N     + H +N+K  ++ GDT V IE G++L G +CKKT+GTS   L+HVI +E+G +A
Sbjct: 358 NCDGFHSGHPENEKSDISPGDTKVLIEDGQVLCGIICKKTVGTSQQGLVHVIMQELGSEA 417

Query: 650 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
           A+KFL   Q +VN WLLQ+ FSIGIGDTIAD  TMETI  TI  AK+ V+ +I +AQ  +
Sbjct: 418 AKKFLNGCQTVVNNWLLQHGFSIGIGDTIADKDTMETITQTIGAAKSRVQEIILKAQQDN 477

Query: 710 LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
           L+ EPG T+ ESFE+ VN+ LNTARD AG SA++SL E NN+K MV +GSKGSFINISQM
Sbjct: 478 LKCEPGMTIRESFEHHVNRELNTARDSAGRSAERSLREENNVKQMVVSGSKGSFINISQM 537

Query: 770 TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
           +ACVGQQNVEGKRIPFGF  RTLPHFTKDD+ PESRGFVENSYLRGLTP EFFFHAMGGR
Sbjct: 538 SACVGQQNVEGKRIPFGFKFRTLPHFTKDDHSPESRGFVENSYLRGLTPTEFFFHAMGGR 597

Query: 830 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
           EGLIDTAVKT+ETGYIQRRLVKA+ED+MVKYDGTVRNSLGDVIQF YGEDGM
Sbjct: 598 EGLIDTAVKTAETGYIQRRLVKALEDVMVKYDGTVRNSLGDVIQFCYGEDGM 649


>gi|226876197|gb|ACO89419.1| RNA polymerase II largest subunit, partial [Phialophora europaea]
          Length = 986

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/1006 (48%), Positives = 655/1006 (65%), Gaps = 38/1006 (3%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGG-- 150
            GF+K V  I+ +VC NC KI A ED+  ++QA++ R+ K+R ++I    K +  C+    
Sbjct: 1    GFLKQVKKILETVCHNCGKIKALEDE-AYRQAIRTRSRKSRFEQIWRLSKTRLVCDADPP 59

Query: 151  DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVE-RK 209
            DE D P + G+  ++   GGCG  QP++   G+++ A +K ++ + DD   +P   +  K
Sbjct: 60   DEGDQPAKPGQNVIRH--GGCGNVQPEMRKAGLQLFASFKPRKSEEDDD--IPGGAQPEK 115

Query: 210  QTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------------- 256
            +   A+  L V + ISDE  + LGL+  YARP+WMILQ LP+PPPPV             
Sbjct: 116  KRFFAQDALNVFRLISDETLETLGLSADYARPEWMILQALPVPPPPVRPSISVDGSGQGQ 175

Query: 257  RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQ 316
            R  DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DN++ G  RA  
Sbjct: 176  RGEDDLTFKLGDIIRANQAVVRTEADGTPDHIKIDLIDLLQYHIATYMDNDIAGLDRAQH 235

Query: 317  RSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTY 376
            +SGR IKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LTY
Sbjct: 236  KSGRAIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIAQTLTY 295

Query: 377  PETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVE 436
            PE VT +NIE+LK  VE GP   PG   A+Y+IRD G+R+DLR++K S D  L+ G+ VE
Sbjct: 296  PEKVTRFNIEKLKTFVENGPTEHPG---ARYVIRDTGERIDLRHVK-SRDMTLQYGWTVE 351

Query: 437  RHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 496
            RH+ +G                   R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQ
Sbjct: 352  RHIQEGX----XXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQ 407

Query: 497  SFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW 556
            S E+R+E+  L MVP  IVSPQ N P+MGI+QDTL G  KI  ++ F+ KD  MN++MW 
Sbjct: 408  SEESRSELRHLCMVPLNIVSPQKNAPLMGIIQDTLCGIYKICDKNVFLTKDAVMNVMMWV 467

Query: 557  EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIE 616
             D+DG +PQP I+KP P WTGKQ+ ++IIPK +NL R           +L  GD  V + 
Sbjct: 468  PDWDGVIPQPAIIKPSPRWTGKQIISMIIPKNLNLERP---EKKQPMPLLPQGDEGVFVT 524

Query: 617  KGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD 676
             G+L+ G   KK +G S G +IH+ + E GPDAA  F    Q +VNYWLL N FS+GIGD
Sbjct: 525  DGQLMFGLFSKKIVGASAGGVIHITFNEWGPDAAMAFFNGAQTVVNYWLLHNGFSVGIGD 584

Query: 677  TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDE 736
            TI     +  + D I+  K+ V  LIK AQ + LEP PG  + ++FE+KV   LN ARD 
Sbjct: 585  TIPSDDVVVAVRDAITTRKHEVGELIKLAQAEELEPMPGMNIRKTFESKVMATLNAARDN 644

Query: 737  AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFT 796
            AG+  ++ L ++N    M  +GSKG+ INI+QM A VGQQ VEGKR+PFGF  RTLPHF 
Sbjct: 645  AGTFMEEKLKDANGAVQMARSGSKGNNINIAQMMAIVGQQVVEGKRVPFGFNYRTLPHFA 704

Query: 797  KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDI 856
            KDD+   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E+ 
Sbjct: 705  KDDFSAYSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEA 764

Query: 857  MVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM--DEENW 914
             V+YD T+R+S G+VIQFLYGEDG+D   IE Q++D L +   +    +  ++  D++ +
Sbjct: 765  TVRYDSTIRDSHGNVIQFLYGEDGLDGAHIEKQSVDILTLSDRQLRDRYYVDVMSDQDPF 824

Query: 915  NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIW 974
                +  +   D    ++++ +FD E + L+  R  +    A+  +  + LP+N+ R+I 
Sbjct: 825  RGKLLCWK---DCVAQQDVQKLFDEEFEHLQEAR-SVVRSAASGAEDEFQLPMNVIRIIH 880

Query: 975  NAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRST 1034
             A K FK+     +D+ P   + +V+ L ER+  V G+DPLS EAQ NATL     LRS 
Sbjct: 881  QAFKNFKIQKGDKTDLDPHHAITSVNSLLERIGAVRGDDPLSQEAQANATLIIRAHLRSR 940

Query: 1035 FASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
             A KR++ E+ L R AF+ +IG +ESRF  ++VAPGEM+G +AAQS
Sbjct: 941  LAFKRIVNEYSLNRLAFDNIIGSVESRFNAAIVAPGEMVGVLAAQS 986


>gi|226876231|gb|ACO89436.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
            TRN506]
          Length = 990

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1008 (48%), Positives = 657/1008 (65%), Gaps = 38/1008 (3%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GFM  V  I+ +VC NC KI A  D  +F+ A+ +R+ K R   +    K +  CE  D 
Sbjct: 1    GFMTKVKKILETVCXNCGKIKA-LDTEEFRHAISLRDRKRRFDAVWRLSKPRLICEA-DP 58

Query: 153  IDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTL 212
             + P Q  + P +   GGCG  QP++   G+++ A +K  RK +DD++  P+    K+ +
Sbjct: 59   PEEPDQLVKGPPQPKHGGCGNAQPEIRRTGLQLWATWKP-RKGDDDEDITPD----KKRI 113

Query: 213  TAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV-------------RPS 259
              +  L   + ++DE  +++GL+  YARP+WMIL  LP+PPPPV             R  
Sbjct: 114  FPQDALNTFRTLTDETLEMMGLSLDYARPEWMILSALPVPPPPVRPSISVDGSGQGQRGE 173

Query: 260  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
            DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DNE+ G  +A  +SG
Sbjct: 174  DDLTFKLGDIIRANQAVLRTEVDGTPDHIKIDLCDLLQYHIATYMDNEIAGLEKAQHKSG 233

Query: 320  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
            RPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPET
Sbjct: 234  RPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 293

Query: 380  VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHL 439
            VTP+N+++LK LV  GP+  PG   A+Y+IRD G+R+DLR+ K++ +  L+ G+KVERH+
Sbjct: 294  VTPFNLDKLKRLVANGPNEHPG---ARYVIRDTGERIDLRHHKRAGEMTLQYGWKVERHI 350

Query: 440  NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 499
             DG                   R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQ+ E
Sbjct: 351  QDGX----XXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQNEE 406

Query: 500  TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 559
            +RAE+  L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ +D  MN++MW  D+
Sbjct: 407  SRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLTRDQVMNVMMWVPDW 466

Query: 560  DGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAA----WHADNDKGILTAGDTLVRI 615
            DG +PQP I+KP P WTGKQ+ ++++PK +NL R  A    +    D+ +    DT + +
Sbjct: 467  DGAIPQPAIIKPTPRWTGKQMISMVLPKALNLERMEAKGEAFKDLKDQTLSPINDTGLMV 526

Query: 616  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 675
             +G L+ G   KK +GTS G +IH I+ E G +AA  F    Q +VNYWLL   FSIGIG
Sbjct: 527  LEGNLMFGLFSKKFVGTSAGGIIHTIFNEFGHEAAMAFFNGAQTVVNYWLLHVGFSIGIG 586

Query: 676  DTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARD 735
            DT+ D  T+  I + +   K +V  L   A  + LE  PG  + ++FE+KV   LN ARD
Sbjct: 587  DTVPDPDTVRKIQEAVDDRKADVDQLTVAAYKEDLEAAPGMNVRQTFESKVMNFLNQARD 646

Query: 736  EAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 795
            +AG++ + SL + NN   M  AGSKGS INI+QMTA VGQQ VEGKRIPFGF  RTLPHF
Sbjct: 647  QAGTATENSLKDLNNAIQMARAGSKGSTINIAQMTAIVGQQAVEGKRIPFGFKYRTLPHF 706

Query: 796  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 855
             KDDY   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E+
Sbjct: 707  AKDDYSAPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEE 766

Query: 856  IMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM---DEE 912
            + VKYD TVR+S G+++QFLYGEDG+D   IE+Q +D + M    F   F  ++   D  
Sbjct: 767  VTVKYDTTVRDSRGNIVQFLYGEDGLDGGHIENQKVDIITMSDEAFMNRFSVDIMSGDTS 826

Query: 913  NWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRL 972
             W    +LQ    +++   E++++FD E++ L   R +    +    + ++ LP+N+ R+
Sbjct: 827  VWRGK-LLQAR--EIQGDTEIQEMFDEELEALRESR-EFLRRMGKGTEDNFQLPLNIARI 882

Query: 973  IWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 1032
            I  AQK FK+     +D+ P   + +V +L +RL VV GED +S EAQ NATL F   LR
Sbjct: 883  IDQAQKNFKIRRGDKTDLDPRYALTSVKQLLDRLIVVRGEDAISKEAQSNATLLFKAQLR 942

Query: 1033 STFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            S  A KR++ EH L R AF+ VIG IESRF+ +   PGEM+G +AAQS
Sbjct: 943  SRLAYKRLVLEHGLNRLAFDNVIGGIESRFIAAHANPGEMVGVLAAQS 990


>gi|226876237|gb|ACO89439.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
            TRN531]
          Length = 983

 Score =  920 bits (2379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1004 (49%), Positives = 657/1004 (65%), Gaps = 37/1004 (3%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GFM  V  ++ +VC NC KI A  D+  F+QA+ IR+PK R +++    K +  CE    
Sbjct: 1    GFMGKVKKVLETVCHNCGKIKA-LDNPDFQQAIAIRDPKRRFEQVWRLSKPRNICEADPP 59

Query: 153  IDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTL 212
             DV  Q  + P     GGCG  QP +   G+++ A +K  RK  DD++  P+    K+ +
Sbjct: 60   EDVD-QLSKGPAPPKHGGCGNAQPDIRRTGLQLYAHWKP-RKGEDDEDATPD----KKRI 113

Query: 213  TAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV-------------RPS 259
              + VL   + ++DE    +G+N  YARPDWMIL  LP+PPPPV             R  
Sbjct: 114  FPQDVLNTFRTLTDETLTKMGINLDYARPDWMILSALPVPPPPVRPSISVDGSGQGQRGE 173

Query: 260  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
            DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DNE+ G  +A  +SG
Sbjct: 174  DDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNEIAGLDKAQHKSG 233

Query: 320  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
            RPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LT+PE 
Sbjct: 234  RPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTFPER 293

Query: 380  VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHL 439
            VT  N+E+LK+ V  GP   PG   A+Y+IRD G+R+DLR+ K++S+  L+ G+ VERH+
Sbjct: 294  VTNKNVEKLKKCVMNGPTEHPG---ARYVIRDSGERIDLRHHKRASEMTLQNGWIVERHI 350

Query: 440  NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 499
             DGD                  R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E
Sbjct: 351  QDGDVXXXXXXXXXXXXX----RVRVMPYSTFRLNLSVTAPYNADFDGDEMNLHVPQSQE 406

Query: 500  TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 559
            +RAE+  L MVP  IVSPQ N P+MGI+QDTL G  KI +RD  + K+  M+I++W  D+
Sbjct: 407  SRAELQNLCMVPLNIVSPQRNSPLMGIIQDTLCGVYKICRRDVLLTKEQVMDIMLWVPDW 466

Query: 560  DGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGE 619
            DG +PQP I+KP P WTGKQ+F++++P  +NL R  A   D     +   DT + + +GE
Sbjct: 467  DGVIPQPAIIKPTPRWTGKQMFSMVLPPTLNLERLDAKGEDP---YVPESDTGLIVLEGE 523

Query: 620  LLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 679
            ++ G L KK +G   G +IH I+ E G + A  F    Q +VNYWLL N FSIGIGDT+ 
Sbjct: 524  IMFGVLSKKYVGAGAGGIIHTIYNEFGWETALAFFNGAQTVVNYWLLHNGFSIGIGDTVP 583

Query: 680  DAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGS 739
            D  T++ I D +   K  V  L K+A+ + LEP PG  + ++FE+KV   LN ARD+AG+
Sbjct: 584  DPDTVQKIQDAVDTKKKEVVELQKKAEAEDLEPSPGMNVRQTFESKVMNSLNQARDQAGA 643

Query: 740  SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDD 799
            + + SL + NN   M  AGSKGS INI+QMTA VGQQ VEGKRIPFGF  R+LPHFTKDD
Sbjct: 644  ATENSLKDLNNAITMARAGSKGSTINIAQMTAIVGQQAVEGKRIPFGFKYRSLPHFTKDD 703

Query: 800  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
            Y   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E++ VK
Sbjct: 704  YSASSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVK 763

Query: 860  YDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM---DEENWNP 916
            YD TVR+S G+V+QFLYGEDG+D   IE+Q +D + M +  F+  ++ ++   D   W  
Sbjct: 764  YDSTVRDSHGNVVQFLYGEDGLDGGHIENQKVDIITMSEKAFNDRYKVDIMNGDVSMWK- 822

Query: 917  NYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNA 976
              +LQ    +++   +L++ FDAE   L+  +  L   +    + S  LP+N+ R+I  A
Sbjct: 823  GRLLQAR--EIQGDTDLQEKFDAEYDALKTSQ-TLLRGMGKGTEDSMQLPLNIGRIIDQA 879

Query: 977  QKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFA 1036
            QK FK+     +D+ P   + AV++L ERL +V GED  S EAQ++ATL     LRS  A
Sbjct: 880  QKNFKIRRGDRTDLDPAYALTAVEQLLERLIIVRGEDLTSKEAQESATLLLKAQLRSRLA 939

Query: 1037 SKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
             KR++ EH + R AF+ +IG +ESRF+ +  APGEM+G +AAQS
Sbjct: 940  YKRLVLEHGVNRLAFDNIIGAVESRFIAAHAAPGEMVGVLAAQS 983


>gi|329132885|gb|AEB78333.1| RNA polymerase II largest subunit [Diplonema sp. ATCC 50224]
          Length = 1010

 Score =  920 bits (2378), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/1031 (46%), Positives = 672/1031 (65%), Gaps = 46/1031 (4%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            ++ LAKPM H G+++T++++++ VCF+CS I  D DD K+++A   R P++RL+    AC
Sbjct: 1    NITLAKPMLHFGYLRTMVNLLKCVCFHCSLIKLDPDDPKYREAAAKRLPEHRLRMFAKAC 60

Query: 142  KNKTKCE---GGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIE--GMKMIAEYKAQRKKN 196
              K+ CE   G DE+D               GCG  QPK+  E     +  EY +Q    
Sbjct: 61   AGKSICEAKHGSDELD--------EAHGAMSGCGKPQPKIYHEPHSFNLWIEYTSQSVD- 111

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
                   E  +RKQ L  E    +L +I +     LG + + +RP+WM+L   PI PP V
Sbjct: 112  ------AEGADRKQRLQPEDARKILCKIRESQLHDLGFSAQ-SRPEWMLLTEFPISPPAV 164

Query: 257  RPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
            RP+          D  T+    I+ +N  L++     A   +I +++ L+Q+HI T  DN
Sbjct: 165  RPAITMDAVTKTEDHTTYMYNKILIYNNKLKKAVAQQAADSVIQDYSNLVQYHIVTLMDN 224

Query: 307  ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
            E  G P+   RSG+PIKSI  R+K K GR+R NLMGKRVDFSARTVI  D  I +D++GV
Sbjct: 225  EKNGIPKCKVRSGQPIKSIRERIKGKGGRVRSNLMGKRVDFSARTVIGGDSQIGMDEVGV 284

Query: 367  PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
            P SIA N+T+PE VT YN + LK LV  GP   PG   AK+IIR+DG R++L + +K S+
Sbjct: 285  PLSIAANMTFPERVTSYNQDILKVLVANGPDKYPG---AKFIIREDGTRINLAFRRKDSE 341

Query: 427  HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 486
              L+ GY VERH+   D VLFNRQP+LH+MS+MGHR ++MP+ TFRLNLS TSPYNADFD
Sbjct: 342  LFLQPGYIVERHVLTNDVVLFNRQPTLHRMSMMGHRARVMPFCTFRLNLSATSPYNADFD 401

Query: 487  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
            GDEMN+HVPQS  +++E+ E MMVPK I+SP+SN PVMGIVQD+LLG   +TKR TF++K
Sbjct: 402  GDEMNLHVPQSVLSKSELQEFMMVPKNIISPKSNSPVMGIVQDSLLGIHLLTKRSTFLDK 461

Query: 547  DVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGIL 606
               MN +M       ++P P ILKP  LWTGKQ+F+L++P  +N   T+          L
Sbjct: 462  QFMMNAVMHIPTMPAQIPIPAILKPEMLWTGKQLFSLVLPP-VNFTATSNEDISEPDRFL 520

Query: 607  TAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 666
               DT VRIEKG L +G + KK++G+S  SL+HVI  E  PD AR  +   Q +  ++L+
Sbjct: 521  PLADTKVRIEKGNLHTGIIDKKSVGSSENSLVHVIHNEFSPDWARDLINGIQRITAFYLI 580

Query: 667  QNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKV 726
               FS+G+ DT+AD  T + I + I ++ ++V  L  +AQ+  L+ +PG+T+ E+FE  +
Sbjct: 581  NKGFSVGVQDTVADVNTKKMIQEIIRRSYDSVDELCNKAQE-GLKRQPGKTVKETFEANI 639

Query: 727  NQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 786
            N++LN  R++AG  AQ+SL+ SN+ K MV+AGSKGS++NISQ+TA VGQQNV GKRIP+G
Sbjct: 640  NKILNKTREDAGKRAQQSLTRSNSFKVMVSAGSKGSYLNISQITAVVGQQNVGGKRIPYG 699

Query: 787  FVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQ 846
            F  RTLPHFT+DDYGPESRGFV+NSYL GLTP EFFFH  GGREGLIDTA KT+ETGYIQ
Sbjct: 700  FRKRTLPHFTQDDYGPESRGFVQNSYLEGLTPSEFFFHMSGGREGLIDTACKTAETGYIQ 759

Query: 847  RRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES-QTLDSLKMKKSEFDKAF 905
            R+LVKA+ED+ V YD TVR++ G V+QFLYGE+G DS  +ES + L  + +  +  DK +
Sbjct: 760  RKLVKALEDLYVGYDATVRDAQGRVVQFLYGEEGYDSTKMESLRPLPLINLDNAARDKTY 819

Query: 906  RFEMDEEN--WNPNYM----LQEYIDDLKTIKELRDVFDAEVQKLEADR--YQLATEI-A 956
            +   +EE   W   ++     +  + D     +L++ ++A     E  R  +Q A EI  
Sbjct: 820  KHTWEEEGPEWGREFLEPRVREMLLQDPNAATKLQEEYEAVKDNREWLRKVFQPAGEIPF 879

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLS 1016
                    +P+NL RL+ NA+  F ++P+  SD+ P+EV++ +D+L++ L V  G + + 
Sbjct: 880  VHPMDGIKVPINLVRLLDNAKINFDINPKGLSDLSPLEVIDGLDQLKKDLVVCRGFNSIH 939

Query: 1017 VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1076
             E Q N T  +N++L++ FASKRV+ E+RL  +AF+W++GE+  R+  + V PGEM+GC+
Sbjct: 940  EERQFNGTRLWNVILQAFFASKRVICEYRLNAKAFQWLLGEVRQRYNSAQVPPGEMVGCI 999

Query: 1077 AAQSIGEPATQ 1087
            AAQS+GEPATQ
Sbjct: 1000 AAQSMGEPATQ 1010


>gi|31127036|gb|AAF26656.2|AF139006_1 RNA polymerase II largest subunit [Scolopendra polymorpha]
          Length = 734

 Score =  919 bits (2376), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/738 (60%), Positives = 566/738 (76%), Gaps = 8/738 (1%)

Query: 336  IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 395
            IRGNLMGKRVDFSARTVITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ELV+ G
Sbjct: 1    IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVQRG 60

Query: 396  PHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHK 455
             +  PG   AKYIIRD+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHK
Sbjct: 61   NNQYPG---AKYIIRDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDVVIFNRQPTLHK 117

Query: 456  MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 515
            MS+MGH I+++P+STFR+NLSVT+PYNADFDGDEMN+HVPQS ETRAE+ EL +VP+ I+
Sbjct: 118  MSMMGHHIRVLPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAIVPRQII 177

Query: 516  SPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLW 575
            +PQSNRPVMGIVQDTL   RK+TKRD F+EKD  MN+LM+   +DGK+P P ILKP+PLW
Sbjct: 178  TPQSNRPVMGIVQDTLTAVRKMTKRDVFLEKDQMMNLLMFLPIWDGKMPMPAILKPKPLW 237

Query: 576  TGKQVFNLIIPKQINLFRTAAWHADNDKG----ILTAGDTLVRIEKGELLSGTLCKKTLG 631
            TGKQ+F+LIIP  +N+ RT   H D++       ++ GDT V +E G+L+SG LCKKTLG
Sbjct: 238  TGKQLFSLIIPGAVNVIRTHYTHPDDEDDSPYKWISPGDTKVLVEHGKLISGILCKKTLG 297

Query: 632  TSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTI 691
            TS GSL+H++  E+G + A  F  H Q ++N WLL    +IGIGDTIAD +T   I ++I
Sbjct: 298  TSAGSLLHIVMLELGWEIAGTFYWHIQMVINNWLLLEGHTIGIGDTIADPQTYIDIQNSI 357

Query: 692  SKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNL 751
             KAK++V ++I++A +  LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN 
Sbjct: 358  KKAKHDVIDVIEKAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNF 417

Query: 752  KAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENS 811
            KAMV +G+KGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENS
Sbjct: 418  KAMVVSGAKGSKINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS 477

Query: 812  YLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 871
            YL GLTP EF+FHAMGGREGLIDTAVKT+ETGYIQRRL+KAME IM+ YDGTVRNS+G +
Sbjct: 478  YLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESIMITYDGTVRNSVGQL 537

Query: 872  IQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIK 931
            IQ  YGEDG+D   +E QTL +LK     F+K F+F++  E        ++ + +L    
Sbjct: 538  IQLRYGEDGLDGGAVEFQTLPTLKPSNKAFEKKFKFDISNERQLKKIFNEDIVKELMGSA 597

Query: 932  ELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMH 991
             +    + E + L+ DR  L  ++   GDS   LP NL R+IWNAQK F ++ R P+D++
Sbjct: 598  NIVGELEKEWETLKRDRETL-RQVFPKGDSKVVLPCNLPRMIWNAQKIFHINTRVPTDLN 656

Query: 992  PMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAF 1051
            P  V+E V +L +++ +V GEDPLS  A +NATL F+ LLRST  +KRV +E RL+ EAF
Sbjct: 657  PFRVIEGVRELVKKIVIVQGEDPLSRMANENATLLFDCLLRSTLCTKRVAEEFRLSSEAF 716

Query: 1052 EWVIGEIESRFLQSLVAP 1069
            EW++GEIE+RF Q+ V P
Sbjct: 717  EWLLGEIETRFQQAQVQP 734


>gi|341858970|gb|AEK97395.1| ribosomal polymerase II largest subunit [Beauveria kipukae]
          Length = 954

 Score =  917 bits (2371), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 481/979 (49%), Positives = 636/979 (64%), Gaps = 52/979 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+K V  ++  VC NCSK+LADE D +F  A+  R+PK R K++   CK K KCE  +  
Sbjct: 1    FIKKVEKVLEIVCHNCSKVLADESDPEFVTAIHTRDPKLRFKRVWAVCKKKRKCENEERQ 60

Query: 154  DVPGQDGEEPLKKN-----KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            D    +   P  KN      GGCG  QP++    +++ A ++         E+ P+   R
Sbjct: 61   DKNKDEEFAPGVKNVVLEGHGGCGNMQPQVRQAALQLKAAFEVT------SEEGPK---R 111

Query: 209  KQT--LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-------------LPIPP 253
            K+T  ++AE   G+L+RIS+ D   +GLN  YARP+WMI+ V             +    
Sbjct: 112  KETVNISAEMAHGILRRISERDLHNIGLNSDYARPEWMIITVLPVPPPPVRPSISMDGTG 171

Query: 254  PPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT++L  IIR N N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPR
Sbjct: 172  TGTRNEDDLTYKLGDIIRANGNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPR 231

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  
Sbjct: 232  ALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIART 291

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVTPYNI +L +LVE GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+
Sbjct: 292  LTYPETVTPYNIAKLHQLVENGPNEHPG---AKYVIRSDGTRIDLRHHRRAAQISLEYGW 348

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERHL                                 LNLSVTSPYNADFDGDEMN+H
Sbjct: 349  KVERHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNLSVTSPYNADFDGDEMNLH 408

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQ+ ETRAE+ EL +VP  IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++  N++
Sbjct: 409  VPQTEETRAEIKELCLVPNNIVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKELVQNLM 468

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGILTAGD 610
            +W  ++DG +PQP ILKPRP WTGKQ+ +++IP +I+L+ +     DN   D G+L    
Sbjct: 469  LWVPNWDGVIPQPAILKPRPRWTGKQIISMVIPPEISLY-SKEDKLDNPRHDAGLL---- 523

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
                I+ GEL+ G L KK++G + G +IH+ + E+GP+ A  FL   Q +V YWLL   F
Sbjct: 524  ----IQSGELMYGLLKKKSVGAAAGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGF 579

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ D  T+  I + I + K  V  L  QA    LE  PG  +  +FENKV+  L
Sbjct: 580  SIGIGDTVPDKATINKIQEHIDEHKAEVARLTAQATANELEALPGMNVRATFENKVSMAL 639

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARD+AG+S  KSL +SNN   M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 640  NMARDQAGTSTMKSLKDSNNAVTMADSGSKGSSINISQMTALVGQQIVEGKRIPFGFKYR 699

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PE+RGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 700  TLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 759

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+ED+  +YDGTVRNSLGDVIQFLYGEDG+D++ IE Q L ++KM  + F+  +R ++ 
Sbjct: 760  KALEDLSARYDGTVRNSLGDVIQFLYGEDGLDAMCIEKQRLGTIKMSNAAFESQYRLDLA 819

Query: 911  E--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLP 966
               E +  +Y   EY ++L   +   ++ D E   L ADR +L  +I  S  G+    LP
Sbjct: 820  NPPEWFRKDY---EYGNELAGDRASMELLDMEWDALVADR-RLVRDINKSKMGEEMMQLP 875

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R+I +A++ F +     S++ P +V+  V  L   +++V G DP+S+EA  NAT+ 
Sbjct: 876  LNIGRIIESAKRVFNIRETDRSNLRPSDVITTVQNLLANMQIVRGTDPISIEADYNATIL 935

Query: 1027 FNILLRSTFASKRVLKEHR 1045
            F  LLRS  A K ++  HR
Sbjct: 936  FKALLRSRLAFKEIVYVHR 954


>gi|157741624|gb|ABV69517.1| RNA polymerase II largest subunit, partial [Verrucula granulosaria]
          Length = 987

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/1008 (48%), Positives = 648/1008 (64%), Gaps = 49/1008 (4%)

Query: 83   LELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACK 142
            ++LA P++H GF+  V  I+ +VC NC KI A  D  + + AL +R+ K R + I     
Sbjct: 1    IKLAVPVYHYGFLGKVKKILETVCHNCGKIKA-LDSEELRYALSVRDRKKRFELIWRLSS 59

Query: 143  NKTKCEGGDEIDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
             +  C+       P  D EEP  K K      GGCG  QP +   G+++ A+YK  RK +
Sbjct: 60   KQNVCQAD-----PPIDEEEPNVKEKAGRIKHGGCGNAQPAIRKTGLELWAQYKP-RKGD 113

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            +++E +PE    K  +   + L + + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV
Sbjct: 114  EEEETVPE----KSQIWPAQALQIFQHLTDETLETLGLSLDFARPEWMILQSLPVPPPPV 169

Query: 257  -------------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
                         R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY
Sbjct: 170  RPSISVDGSGQGQRGEDDLTFKLGDIIRANQNLIRINTEGAPEHIAKELQALLQYHVATY 229

Query: 304  FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
             DN++    +A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D+
Sbjct: 230  MDNDIANLDKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDE 289

Query: 364  LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK 423
            +GVP SIA  LTYPETVT +NI RLK  V  GP   PG   A+Y+IR+ G+R+DLRY K 
Sbjct: 290  VGVPRSIARTLTYPETVTRFNISRLKAFVTNGPEAHPG---ARYVIRETGERIDLRYHKD 346

Query: 424  SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNA 483
            +S   L+ G+KVERHL DGD +LFNRQP                    RL LSVT+PYNA
Sbjct: 347  TSQIALKTGWKVERHLMDGDIILFNRQPXXXXXXXX-------XXXXXRLXLSVTTPYNA 399

Query: 484  DFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF 543
            DFDGDEMN+HVPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F
Sbjct: 400  DFDGDEMNLHVPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIF 459

Query: 544  IEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-D 602
            + ++  MNI++W  D+DG +PQP I+KPRP WTGKQV ++++P  +NL R          
Sbjct: 460  LSREEVMNIMLWVPDWDGVIPQPAIVKPRPRWTGKQVISMVLPPALNLVRIDGKEPQPPG 519

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            +    AGD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VN
Sbjct: 520  ERFAPAGDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVN 579

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            YWLL N FSIGIGDT+ D  T+E I   + + K  V+ + + A  + LE  PG  + E+F
Sbjct: 580  YWLLHNGFSIGIGDTVPDVGTVEKIKLEVDRKKAEVERITQMAVAEDLEALPGMNVRETF 639

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E+KV+  LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKR
Sbjct: 640  ESKVSAALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKR 699

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ET
Sbjct: 700  IPFGFKYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAET 759

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IE Q +D + M  + F+
Sbjct: 760  GYIQRRLVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIEKQRVDVIAMSDAAFE 819

Query: 903  KAFRFEMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIAT 957
            K FR ++ E     W       E   ++    +++ +FD E ++L  DR  L      A 
Sbjct: 820  KQFRVDLMESKKLVWQGRL---EQASEIHGDVDVQKLFDEEYERLVEDRKFLRYTNSAAN 876

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV 1017
            + D    LP+N+ R++  A+ TF +     SD+HP  V+  V +L +RL +V G+D +S 
Sbjct: 877  AADEMMYLPMNVVRILNQARTTFNIQSGSTSDLHPSYVIPKVKQLLDRLIIVRGDDRISQ 936

Query: 1018 EAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
            EAQ+NATL     LRS  A KR+  E+ L R AF+ VIG IE+RF+++
Sbjct: 937  EAQENATLLIKAQLRSRLAFKRLALEYSLNRLAFDHVIGAIETRFIKA 984


>gi|443906356|dbj|BAM76816.1| RNA polymerase II largest subunit, partial [Metacordyceps
            brittlebankisoides]
          Length = 845

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 466/867 (53%), Positives = 607/867 (70%), Gaps = 41/867 (4%)

Query: 169  GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISD 226
            GGCG  QP++    ++  A +         QE  P+   R++T  +T E   G+L+RIS+
Sbjct: 1    GGCGNVQPQVRQAALQXKAAFDVA------QEDGPK---RRETVPITPEMAHGILRRISE 51

Query: 227  EDCQLLGLNPKYARPDWMILQV-------------LPIPPPPVRPSDDLTHQLAMIIRHN 273
            ED + +GLN  YARP+WMIL V             +      +R  DDLT++L  IIR N
Sbjct: 52   EDLRHMGLNSDYARPEWMILTVLPVPPPPVRPSISMDGTGTGMRNEDDLTYKLGDIIRAN 111

Query: 274  ENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKE 333
             N+++  R G+P HI  +F +LLQ+H+ATY DN++ GQPRA Q+SGRP+K+I +RLK KE
Sbjct: 112  GNVKQAIREGSPQHIARDFEELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKE 171

Query: 334  GRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE 393
            GR+RGNLMGKRVDFSARTVIT D  +++ ++GVP SIA  LTYPETVTPYNI +L +LVE
Sbjct: 172  GRLRGNLMGKRVDFSARTVITGDANLSLHEVGVPRSIARTLTYPETVTPYNIGKLHQLVE 231

Query: 394  YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSL 453
             GP+  PG   AKY+IR DG R+DLR+ ++++   LE G+KVERHL DGD+++FNRQPSL
Sbjct: 232  NGPNEHPG---AKYVIRADGTRIDLRHHRRAAQISLEYGWKVERHLMDGDYIIFNRQPSL 288

Query: 454  HKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKC 513
            HK S+MGHR+++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV EL +VP  
Sbjct: 289  HKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCLVPNN 348

Query: 514  IVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRP 573
            IVSPQ N P+MGIVQD+L G  K+ +RDTFI+K++ MN+++W  ++DG +PQP ILKPRP
Sbjct: 349  IVSPQKNGPLMGIVQDSLAGVYKLCRRDTFIDKEMVMNMMLWVPNWDGVIPQPAILKPRP 408

Query: 574  LWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTS 633
             WTGKQ+ +++IP++I+L      HA      +   DT + I+ GELL G L KK +G +
Sbjct: 409  RWTGKQLISMVIPQEISL------HAPEGDSDIPLKDTGLLIQSGELLYGLLKKKNVGAA 462

Query: 634  TGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISK 693
             G +IH+ + E+GP+ A  FL   Q +V YWLL    SIGIGDT+ D +T+E I   I  
Sbjct: 463  AGGIIHLCYNELGPEGAMAFLNGVQQVVTYWLLNTGHSIGIGDTVPDKQTIEKIQVHIDT 522

Query: 694  AKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKA 753
             K  V  L  QA    LE  PG  +  +FENKV+  LN+ARD+AG++ QKSL +SNN   
Sbjct: 523  QKAEVAKLTAQATANELEALPGMNVRATFENKVSMALNSARDQAGTTTQKSLKDSNNAVT 582

Query: 754  MVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYL 813
            M  +GSKGS INISQMTA VGQQ VEGKRIPFGF  RTLPHFTKDDY PE+RGFVENSYL
Sbjct: 583  MSESGSKGSSINISQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYL 642

Query: 814  RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQ 873
            RGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+ED+  +YDGTVRNSLGD++Q
Sbjct: 643  RGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDLSARYDGTVRNSLGDIVQ 702

Query: 874  FLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM-DEENW-NPNYMLQEYIDDLKTIK 931
            FLYGEDG+ ++ IE Q L  LKM  + F+K +R ++ +  +W   +Y   EY ++L   K
Sbjct: 703  FLYGEDGLXAMCIEKQKLGILKMSDAAFEKKYRLDLANPPDWFKKDY---EYGNELAGDK 759

Query: 932  ELRDVFDAEVQKLEADRYQLATEIATS--GDSSWPLPVNLKRLIWNAQKTFKVDPRRPSD 989
            E  D+ D+E + L +DR Q    I  S  G+    LP+N+ R+I  A++ F V     S+
Sbjct: 760  ESMDLLDSEWETLLSDR-QTVRLINKSKMGEEMMQLPLNIGRMIETAKRVFNVRATDRSN 818

Query: 990  MHPMEVVEAVDKLQERLKVVPGEDPLS 1016
            + P +V+  +  L   L++V G DP+S
Sbjct: 819  LRPADVIPRIQNLLSDLRIVRGSDPIS 845


>gi|226876175|gb|ACO89408.1| RNA polymerase II largest subunit, partial [Knufia sp. CBS 268.34]
          Length = 970

 Score =  915 bits (2364), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 483/995 (48%), Positives = 644/995 (64%), Gaps = 48/995 (4%)

Query: 109  CSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNK 168
            C  I A  D+ + + A+  RNPK R +K+    K +  CE     D    + + P   + 
Sbjct: 1    CGXIKA-LDNVERQSAIAARNPKIRFEKLWRLSKPRLICEPSPPAD--DDNLKAPKGPDH 57

Query: 169  GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDED 228
            GGCG  QP +   G+ + A YK  + KN++ E +     R   + A R L +L+ ++D+ 
Sbjct: 58   GGCGNVQPMIRKRGLALEAHYK--KGKNEEDEDVQTETHR---IYARRALQILQLLNDDT 112

Query: 229  CQLLGLNPKYARPDWMILQVLPIPPPPVRPS------------DDLTHQLAMIIRHNENL 276
             +++GLN  YARP+W ILQ LP+PPP VRPS            DDLT++LA ++R N+++
Sbjct: 113  LKMMGLNKDYARPEWFILQALPVPPPAVRPSVSQDGGSGPRNEDDLTYKLADVVRANQSV 172

Query: 277  RRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRI 336
             R E  G P HI ++   LL++HI TY DNE+ G  RA  +SGRPIK++ +RLK KEGR+
Sbjct: 173  TRCEVEGTPEHIKNQLVDLLEYHINTYMDNEIAGLDRAQHKSGRPIKAVRARLKGKEGRL 232

Query: 337  RGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGP 396
            R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LT+PETVT +NIERLK  V  GP
Sbjct: 233  RQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTFPETVTNFNIERLKRCVANGP 292

Query: 397  HPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKM 456
               PG   A+Y+IR  G R+DLR+ KKS D +L+ G+KVERH+ D               
Sbjct: 293  TEWPG---ARYVIRGSGDRIDLRHAKKSGDINLQYGWKVERHIVD----XXXXXXXXXXX 345

Query: 457  SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 516
                 R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQS E RAE+ +L MVP+ IVS
Sbjct: 346  XXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVPQSQEARAELQQLCMVPRNIVS 405

Query: 517  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWT 576
            PQ N P+MGIVQDTL G  K+T+RD F+ K+  MNI++W  ++DG +PQP +L+P P WT
Sbjct: 406  PQKNAPLMGIVQDTLCGIYKLTRRDIFLSKEQVMNIMLWVPEWDGVIPQPALLRPTPRWT 465

Query: 577  GKQVFNLIIPKQINLFR----TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGT 632
            GKQ+ ++++P  +NL R    T   H       L   D  + I+ GE+++G L KK +GT
Sbjct: 466  GKQILSMVLPPNLNLERLEDKTEIEH------YLHPDDKSLIIQGGEVMTGQLLKKHVGT 519

Query: 633  STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTIS 692
              G +IH I+ E G DAA  F    Q +VNYWLL   FSIG+GDT+ D  T+  I + + 
Sbjct: 520  GAGGVIHTIFNENGHDAAMAFFNGAQVVVNYWLLHYGFSIGVGDTVPDIDTVARIQNVVD 579

Query: 693  KAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLK 752
              K  V ++   A    LE  PG  + ++FE+KV   LN ARDEAG +AQ SL + NNL 
Sbjct: 580  TQKGKVDDITAAAYANKLESSPGMNVRQTFESKVMMELNKARDEAGDAAQNSLKDLNNLT 639

Query: 753  AMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSY 812
             M  +GSKGS INI+Q+ A VGQQ VEGKRI FGF  RTLPHF+KDDY   +RGF+ENSY
Sbjct: 640  QMARSGSKGSGINIAQVMALVGQQAVEGKRILFGFNYRTLPHFSKDDYSATARGFIENSY 699

Query: 813  LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 872
            LRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E++ VKYDGTVR+S G+V+
Sbjct: 700  LRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEVCVKYDGTVRDSRGNVM 759

Query: 873  QFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM---DEENWNPNYM-LQEYIDDLK 928
            QF+YGEDG+D   IE Q +D +      F+K ++ ++     + W    +  Q+ I D  
Sbjct: 760  QFVYGEDGLDGAHIEKQKVDIITPDDKSFEKRYKVDLVNGSVKQWRGVLVQAQQLIGD-- 817

Query: 929  TIKELRDVFDAEVQKLEADR---YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPR 985
               +L+D+FD E +KL   R     +    +   +  + LP+N+ R+I  AQ+ FK+   
Sbjct: 818  --TDLQDLFDEEYEKLLETRTFFRSINGNTSMGSEEDFQLPLNVSRIIGQAQRAFKIRRG 875

Query: 986  RPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHR 1045
              +D+ P  V+ AV+ L +RL V+ G D LS EAQ NATL F   LRS  A KR++ EH 
Sbjct: 876  DKTDLDPRYVLNAVNLLMDRLPVIRGNDDLSREAQDNATLLFRSQLRSKLAYKRLVVEHS 935

Query: 1046 LTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            LT+ AF+ +IG IESRFL + V+PGEM+G +AAQS
Sbjct: 936  LTKLAFDNIIGGIESRFLAAAVSPGEMVGVLAAQS 970


>gi|226876233|gb|ACO89437.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
            TRN508]
          Length = 983

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1009 (48%), Positives = 648/1009 (64%), Gaps = 47/1009 (4%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GFM  V  I+ +VC NC KI A  D    + AL IR+ K R   +    K +  CE    
Sbjct: 1    GFMTKVKKILETVCHNCGKIKA-LDSEDLRHALSIRDRKRRFDAVWRLSKPRNICEAD-- 57

Query: 153  IDVPGQDGEEPLKK----NKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
               P +D E P K       GGCG  QP +   G+++ A +K  +K  DD++  P+    
Sbjct: 58   ---PPEDPEAPAKGAPAVRHGGCGNAQPDIRRTGLQLWASWKP-KKGEDDEDITPD---- 109

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS--------- 259
            K+ +  +  L   + ++DE  + +GL+  YARP+WMILQ LP+PPPPVRPS         
Sbjct: 110  KKRIFPQDALNTFRLLTDETLEAMGLSLDYARPEWMILQALPVPPPPVRPSISVDGSGQG 169

Query: 260  ----DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRAT 315
                DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DN++ G  +A 
Sbjct: 170  QHSEDDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNDIAGLDKAQ 229

Query: 316  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 375
             +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LT
Sbjct: 230  HKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLT 289

Query: 376  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 435
            YPE VTP+NI++LK LV  GP   PG   A+Y+IRD G+R+DLR+ K++ +  ++ G++V
Sbjct: 290  YPEIVTPFNIDKLKRLVANGPTEHPG---ARYVIRDTGERIDLRHHKRAGEMKVQYGWRV 346

Query: 436  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 495
            ERH+ DGD                  R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVP
Sbjct: 347  ERHIQDGD----XXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVP 402

Query: 496  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 555
            QS E+RAE+  L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ +D  MNI++W
Sbjct: 403  QSEESRAELANLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDIFLSRDQVMNIMLW 462

Query: 556  WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRI 615
              D+DG +PQP ILKP P WTGKQ+ ++ +P  +NL R  A   D    +  + DT V +
Sbjct: 463  VPDWDGVIPQPAILKPTPRWTGKQIISMALPPGLNLERLDAKGEDP---LSPSVDTGVLV 519

Query: 616  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 675
             +GE++ G   KK +GTS G +IH I+ E G + A +F    Q +VNYWLL   FS+GIG
Sbjct: 520  LEGEVMFGIFSKKLVGTSAGGVIHTIYNEFGWEKAMQFFNGAQTIVNYWLLHVGFSVGIG 579

Query: 676  DTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARD 735
            DT+ D  T+  I + +   K  V  +  +A +  L+  PG T+ ++FE+KV   LN ARD
Sbjct: 580  DTVPDPDTVNKIQEAVDSKKAEVAEITAKAYNDDLDASPGMTVRQTFESKVMNALNQARD 639

Query: 736  EAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 795
             +G++ ++SL + NN   M  +GSKGS INI+QMTA VGQQ VEGKRIPFGF  R+LPHF
Sbjct: 640  LSGAATEQSLKDLNNAIQMARSGSKGSTINIAQMTAIVGQQAVEGKRIPFGFKYRSLPHF 699

Query: 796  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 855
             KDDY   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E+
Sbjct: 700  AKDDYSAHSRGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEE 759

Query: 856  IMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM---DEE 912
            + VKYD TVR+S G+V+QFLYGEDG+D   IE+Q +D L + +  F   +  ++   D  
Sbjct: 760  VTVKYDSTVRDSRGNVVQFLYGEDGLDGGHIENQKVDILTISEKAFSARYAVDVMSGDVT 819

Query: 913  NWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL-EADRYQLATEIATSGDSSWPLPVNLKR 971
             W    +      +L+   ELR +FD E + L EA  +   T+  T  + S  LP+N+ R
Sbjct: 820  MWKGRLIQAR---ELQGDAELRQLFDEEFEALQEARTFLRGTDRGT--EDSMQLPLNIAR 874

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
            +I  AQK FK+     +D+ P  V+ +V+ L  RL VV G+D +S EAQ NATL     L
Sbjct: 875  IIDQAQKNFKIRRGDKTDLDPRHVITSVNGLMNRLIVVRGDDAISREAQHNATLLLKAQL 934

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            RS    KR++ +H LT  AF  VIG IESRFL +   PGEM+G +AAQS
Sbjct: 935  RSRLGFKRLVIDHSLTTLAFNNVIGSIESRFLAAAANPGEMVGVLAAQS 983


>gi|226876235|gb|ACO89438.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
            TRN515]
          Length = 983

 Score =  911 bits (2354), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 492/1008 (48%), Positives = 647/1008 (64%), Gaps = 45/1008 (4%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GFM  V  I+  VC    KI A  D    + AL IR+ K R   +    K +  CE    
Sbjct: 1    GFMTKVKKILEMVCXXXGKIKA-LDSEDLRHALSIRDRKRRFDAVWRLSKPRNVCEAD-- 57

Query: 153  IDVPGQDGEEPLKK----NKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
               P +D + P K       GGCG  QP +   G+++ A +KA +K  DD++  PE    
Sbjct: 58   ---PPEDADGPAKGAPTVRHGGCGNAQPDIRRTGLQLWASWKA-KKGEDDEDTTPE---- 109

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS--------- 259
            K+ +     L   + ++DE  + +GL+  YARP+WMILQ LP+PPPPVRPS         
Sbjct: 110  KKRIFPNDALNTFRLLTDETLEAMGLSLDYARPEWMILQALPVPPPPVRPSISVDGSGQG 169

Query: 260  ----DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRAT 315
                DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DN++ G  +A 
Sbjct: 170  QHSEDDLTFKLGDIIRANQAVLRCEVDGTPDHIKVDLQDLLQYHIATYMDNDIAGLDKAQ 229

Query: 316  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 375
             +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LT
Sbjct: 230  HKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLT 289

Query: 376  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 435
            YPE VTP+NI++LK LV  GP   PG   A+Y+IRD G+R+DLR+ K++ + +L+ G++V
Sbjct: 290  YPEVVTPFNIDKLKRLVANGPTEHPG---ARYVIRDTGERIDLRHHKRAGEMNLQYGWRV 346

Query: 436  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 495
            ERH+ DGD                  R+++MPYSTFRLNLSVT+PYNADFDGDEMN+HVP
Sbjct: 347  ERHIQDGD----XXXXXXXXXXXXXXRVRVMPYSTFRLNLSVTTPYNADFDGDEMNLHVP 402

Query: 496  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 555
            QS E+RAE+  L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ +D  MN+++W
Sbjct: 403  QSEESRAELANLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLSRDQVMNLMLW 462

Query: 556  WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRI 615
              ++DG +PQP ILKP P WTGKQ+ ++ +P  +NL R  A   D    +  + DT V +
Sbjct: 463  VPEWDGVIPQPAILKPTPRWTGKQIISMALPPALNLERLDAKGEDP---LTPSVDTGVMV 519

Query: 616  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 675
             +GEL+ G   KK +GTS G +IH I+ E G + A +F    Q +VNYWLL N FS+GIG
Sbjct: 520  LEGELMFGLFSKKLVGTSAGGVIHTIYNEFGWEKALQFFNGAQTIVNYWLLHNGFSVGIG 579

Query: 676  DTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARD 735
            DT+ D  T+  I + +   K  V ++ ++A    LE  PG T+ ++FE+KV   LN ARD
Sbjct: 580  DTVPDPDTVNKIQEAVDSKKEEVADITEKAYSDQLEAAPGMTVRQTFESKVMNALNQARD 639

Query: 736  EAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 795
             +G++ ++SL + NN   M  +GSKGS INI+QMTA VGQQ VEGKRIPFGF  R+LPHF
Sbjct: 640  LSGAATEQSLKDINNAIQMARSGSKGSTINIAQMTAIVGQQAVEGKRIPFGFKYRSLPHF 699

Query: 796  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 855
             KDDY   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E+
Sbjct: 700  AKDDYSAHSRGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEE 759

Query: 856  IMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM---DEE 912
            + VKYD TVR+S G+V+QFLYGEDG+D   IE+Q +D L      F+  F  ++   D  
Sbjct: 760  VTVKYDSTVRDSRGNVVQFLYGEDGLDGGHIENQKVDILTTSDKAFNTRFAVDVMSGDIS 819

Query: 913  NWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRL 972
             W    +      +L+   EL+ +FD E + L+  R  L + +    + S  LP+N+ R+
Sbjct: 820  GWKGRLVQAR---ELQGDAELQQLFDEEFEALQEARTFLRS-MDRGTEDSMQLPLNIARI 875

Query: 973  IWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 1032
            I  AQK FK+     +D+ P  V+ +V+ L +RL +V G+D  S EAQ NATL     LR
Sbjct: 876  IDQAQKNFKIRRGDRTDLDPRHVLTSVNALMDRLIIVRGDDATSREAQHNATLLLKAQLR 935

Query: 1033 STFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
            S  A KR++ +H LT  AF  VIG +ESRFL +   PGEM+G +AAQS
Sbjct: 936  SRLAFKRLVIDHSLTTLAFNNVIGSVESRFLAAAANPGEMVGVLAAQS 983


>gi|157741578|gb|ABV69494.1| RNA polymerase II largest subunit, partial [Placopyrenium fuscellum]
          Length = 980

 Score =  910 bits (2351), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/1009 (48%), Positives = 646/1009 (64%), Gaps = 59/1009 (5%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GF+  V  ++ +VC NC KI A  D  + + A  +R+ K R + I    + +  C+    
Sbjct: 1    GFLGKVKKLLETVCHNCGKIKA-VDSEELRYAHSVRDRKKRFELIWRLSQKQNVCQA--- 56

Query: 153  IDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPV 206
             D P  D ++P+ K K      GGCG  QP +   G+++ A+YK  RK +D++E +PE  
Sbjct: 57   -DSP-DDEDDPIAKEKSGKIRHGGCGNAQPAIRKTGLELWAQYKP-RKGDDEEETVPE-- 111

Query: 207  ERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV---------- 256
              K  +   + L V + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV          
Sbjct: 112  --KSQIWPAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLPVPPPPVRPSITVDGSG 169

Query: 257  ---RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN++    +
Sbjct: 170  QGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDNDIANLDK 229

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  
Sbjct: 230  AQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 289

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVT +NIERLK+LV  GP   P   GA+YIIR++ +R+DLRY K ++D  L  G+
Sbjct: 290  LTYPETVTRFNIERLKQLVTNGPQMHP---GARYIIRENNERIDLRYHKNTADIALRTGW 346

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERH+ DG                              LNLSVT+PYNADFDGDEMN+H
Sbjct: 347  KVERHIMDG-------XXXXXXXXXXXXXXXXXXXXXXXLNLSVTTPYNADFDGDEMNLH 399

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS ETRAE+ +L MVP  IVSPQ NRP+MGIVQDTL G  KI +RD F+ ++  MNI+
Sbjct: 400  VPQSEETRAELAQLCMVPLNIVSPQRNRPLMGIVQDTLCGIYKICRRDVFLSREEVMNIM 459

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG------ILT 607
            +W  D+DG +PQP I KPRP WTGKQ+ + ++P  +NL R      D   G         
Sbjct: 460  LWVPDWDGVIPQPAIFKPRPRWTGKQIISTVLPPALNLVRI-----DGKAGQPPGERFAP 514

Query: 608  AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 667
            AGD+ + +  G+LL G   KK++GT +  +IH I+ E G + A  F    Q +VNYWLL 
Sbjct: 515  AGDSGLFVADGQLLFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLH 574

Query: 668  NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVN 727
            N FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+FE+KV 
Sbjct: 575  NGFSIGIGDTVPDVGTVEKIKFEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVA 634

Query: 728  QVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 787
              LN ARD+AG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKRIPFGF
Sbjct: 635  AALNGARDQAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPFGF 694

Query: 788  VDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQR 847
              RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQR
Sbjct: 695  KYRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQR 754

Query: 848  RLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF 907
            RLVKA+E++ VKYDGTVR+S G+V+QF+YGEDG+D   IESQ +D + M    F+  FR 
Sbjct: 755  RLVKALEEVTVKYDGTVRDSRGNVVQFIYGEDGLDGAHIESQRVDVIAMSDVAFENQFRV 814

Query: 908  EMDEEN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLAT--EIATSGDSS 962
            ++ E     W+      E   ++    +++ +FD E ++L  DR  L +  + A S D  
Sbjct: 815  DLMEPKKLVWHDRL---EQASEIHGDVDVQKLFDEEFEQLAEDRQFLRSINQAANSADEM 871

Query: 963  WPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKN 1022
             PLP+N+ R++  A+ TFK+     SD+HP  V+  V +L +RL +V GED +S+EAQ+N
Sbjct: 872  MPLPMNVVRILNQARTTFKIQAGAASDLHPSYVIPKVRQLLDRLIIVRGEDRISLEAQEN 931

Query: 1023 ATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
            ATL     LRS  A KR++ E+ L R AF+ VIG IE+RF +S V+PGE
Sbjct: 932  ATLLIKAQLRSRLAFKRLVLEYGLNRLAFDHVIGAIETRFTRSTVSPGE 980


>gi|157741526|gb|ABV69468.1| RNA polymerase II largest subunit, partial [Placidium sp. AFTOL 2237]
          Length = 978

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 491/999 (49%), Positives = 641/999 (64%), Gaps = 51/999 (5%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GF+  V  ++ +VC NC KI A  D    + A  +R+ K R + I    + +  C+    
Sbjct: 2    GFLGKVKKLLETVCHNCGKIKA-VDSEDLRYARSVRDRKKRFELIWRLSQKQNVCQA--- 57

Query: 153  IDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPV 206
             D P  D ++P+ K K      GGCG  QP +   G+++ A+YK   +K+DD+E   E V
Sbjct: 58   -DSP-DDEDDPIAKEKSGKVRHGGCGNAQPAIRKSGLELWAQYKP--RKSDDEE---ETV 110

Query: 207  ERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV---------- 256
              K  +   + L V + ++DE  + LGLN  +ARP+WMILQ LP+PPPPV          
Sbjct: 111  SEKSQIWPAQALQVFQHLTDETLETLGLNLDFARPEWMILQSLPVPPPPVRPSISVDGSG 170

Query: 257  ---RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN++    +
Sbjct: 171  QGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDNDIANLDK 230

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  
Sbjct: 231  AQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 290

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVT +NI RLK+ V  GP   PG   A+YIIR+  +R+DLRY K +S   L++G+
Sbjct: 291  LTYPETVTRFNISRLKQFVTNGPEMHPG---ARYIIREHNERIDLRYHKDTSQIALKVGW 347

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERH+ DGD                           FRLNLSVT+PYNADFDGDEMN+H
Sbjct: 348  KVERHIVDGDVXXXXXXXXXXXXXXX-------XXXXFRLNLSVTTPYNADFDGDEMNLH 400

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++  MNI+
Sbjct: 401  VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREEVMNIM 460

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG--ILTAGDT 611
            +W  D+DG VPQP I KPRP WTGKQ+ ++++P  +NL R     A    G      GD 
Sbjct: 461  LWVPDWDGVVPQPAIFKPRPRWTGKQMVSMVLPSALNLVRIDG-KASQPPGERFSPVGDG 519

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
             + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q ++NYWLL N FS
Sbjct: 520  GLFVADGQLMFGMFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVINYWLLHNGFS 579

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IGIGDT+ D  T+E I + + K K  V+ + + A  + LE  PG  + E+FE+KV+  LN
Sbjct: 580  IGIGDTVPDVGTVEKIKNEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALN 639

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             ARDEAGS+ + SL +SNN   M  AGSKGS INISQMTA VGQQ+VEGKRIPFGF  RT
Sbjct: 640  GARDEAGSATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPFGFKYRT 699

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVK
Sbjct: 700  LPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVK 759

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            A+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+K FR ++ E
Sbjct: 760  ALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVISMSDDAFEKQFRVDLME 819

Query: 912  EN---WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQL--ATEIATSGDSSWPLP 966
                 W+      E   ++    +++ +FD E ++L  DR  L    + ATS D   PLP
Sbjct: 820  PKKLVWHDRL---EQASEIHGDVDVQKLFDEEYEQLVEDRSFLRYINKAATSSDEMMPLP 876

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R++  AQ TFK+     SD+HP  V+  V +L ERL +V G D +S+EAQ NATL 
Sbjct: 877  MNVVRILNQAQTTFKIQSGAASDLHPSYVIPKVKQLLERLVIVRGNDKISLEAQDNATLL 936

Query: 1027 FNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
                LRS  A KR++ E+ L R AF+ V+G IE+RF+++
Sbjct: 937  IKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKA 975


>gi|226876257|gb|ACO89449.1| RNA polymerase II largest subunit, partial [Eremascus albus]
          Length = 994

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 486/1013 (47%), Positives = 663/1013 (65%), Gaps = 45/1013 (4%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+  +  ++ +VC NC KI A+  D K+  AL+ R+PK R   I    K+   CE     
Sbjct: 1    FITKIKKLLETVCHNCGKIKANTSDPKYLDALRFRDPKRRFDAIWRLSKDVLVCEAD--- 57

Query: 154  DVPGQDGEEPLKKN-------KGGCGAQQPKLTIEGMKMIAEYKAQRKKND--DQEQLPE 204
              P  + ++P  K         GGCG  QP++  EG+ ++  +K   K ND  D   + +
Sbjct: 58   --PSPEDQDPFDKGASKPLNFHGGCGNAQPQVRREGLALVGTWKPN-KLNDMMDDTDIQQ 114

Query: 205  PVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV-------- 256
            P   K+ ++   VL + + IS +D +L+GL+  YARP+WM++ VLP+PPPPV        
Sbjct: 115  P--EKKEISPRMVLNIFRNISTDDVRLIGLSNDYARPEWMVITVLPVPPPPVRPSVLVGG 172

Query: 257  -----RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 311
                 R  DDLT++LA I+R N+N+ R E+ G+P H++ EF  LLQ+H+ATY DN++ GQ
Sbjct: 173  AGTGQRGEDDLTYKLAEIVRANQNVTRCEQEGSPEHVVREFESLLQYHVATYMDNDIAGQ 232

Query: 312  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 371
            P+A Q+S RP+K++  RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA
Sbjct: 233  PQAMQKSNRPVKALRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIA 292

Query: 372  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH-LE 430
              LTYPE VTP+NI +L  L++ GP   P   GA+Y+IR+ G+R+DLR+ K     + L+
Sbjct: 293  RTLTYPEVVTPFNINKLGYLIDNGPDLHP---GARYVIRNTGERIDLRHHKSGGGRNFLQ 349

Query: 431  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 490
             G++VERH++DG                                 SVTSPYNADFDGDEM
Sbjct: 350  YGWRVERHIDDGXXXXXXXXXXXXXXXXX----XXXXXXXXXXXXSVTSPYNADFDGDEM 405

Query: 491  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
            N+HVPQS E+RAE+ EL +VP+ IVSPQ N P+MGI+QDTL G  KI  RDTF++K+  M
Sbjct: 406  NLHVPQSEESRAELKELCLVPQNIVSPQRNGPLMGIIQDTLCGIFKICDRDTFLKKEEVM 465

Query: 551  NILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGD 610
            NIL+W  D+DG +PQP ILKPRP WTGKQ+ ++++P  +NL R     A   +      D
Sbjct: 466  NILLWVPDWDGVIPQPAILKPRPRWTGKQMISMVLPSGLNLLRVDKDKAPMKEKFAPPTD 525

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
              + +  GEL+ G   KKT+G + G +IH I+ E GP+    F    Q +VNYWLL N F
Sbjct: 526  GGLFVHGGELMYGMFSKKTVGATGGGIIHTIFNEYGPEVTMNFFNGAQTVVNYWLLHNGF 585

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDTI D  T++ I + +   K+ V ++   A + +LEP  G  + E+FE+KV++ L
Sbjct: 586  SIGIGDTIPDVGTIQKIEEAVRIRKDEVDSITASATENTLEPLAGMNVRETFESKVSRAL 645

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARDEAGS  +K+L + NN   M  +GSKGS INISQM A VGQQ+VEGKRIPFGF  R
Sbjct: 646  NNARDEAGSVTEKNLKDLNNGVQMARSGSKGSTINISQMMAIVGQQSVEGKRIPFGFKYR 705

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            TLPHFTKDDY PESRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQR+LV
Sbjct: 706  TLPHFTKDDYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLV 765

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-M 909
            KA+E++MVKYDGTVRNSLGDV+QFLYGEDG+D   IE+Q +D +K   ++F   +R + M
Sbjct: 766  KALEEVMVKYDGTVRNSLGDVVQFLYGEDGLDGAHIENQRVDVIKCSDAKFRDRYRVDLM 825

Query: 910  D-EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSS-WPLPV 967
            D E   +P+  L E  +++    E++   D E ++L+ DR  L +  AT  D     LP+
Sbjct: 826  DPERTISPD--LLEQANEITGDIEVQRYLDEEWEQLQKDRAFLRS--ATKEDEEMMQLPI 881

Query: 968  NLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFF 1027
            N++R++ +A+ T ++     SD+HP EV+     L +RL VV G+D +S EAQ++AT+ F
Sbjct: 882  NIQRILESAKSTVRIREGAISDLHPAEVIPQTRDLLDRLVVVRGDDTISREAQESATMLF 941

Query: 1028 NILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
               LRS  A +R++ E+ L + AF+ V+G IE+RF +++  PGEM+G +AAQS
Sbjct: 942  KAQLRSRLAFRRLVVEYSLNKLAFQHVLGAIENRFSRAMANPGEMVGVLAAQS 994


>gi|226876152|gb|ACO89397.1| RNA polymerase II largest subunit, partial [Capronia parasitica]
          Length = 983

 Score =  906 bits (2342), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1004 (49%), Positives = 646/1004 (64%), Gaps = 37/1004 (3%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GFM  V  I+ +VC NC KI A  D  +F+QA+  R+ K R   +    K +  CE  D 
Sbjct: 1    GFMTKVKKILETVCHNCGKIKA-LDTPEFQQAISTRDRKRRFDAVWRLSKPRNVCEA-DP 58

Query: 153  IDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTL 212
             + P Q  + P     GGCG  QP +   G+ + A +K  RK +DD++  PE    K+ +
Sbjct: 59   PEEPDQLLKGPPLPKHGGCGNAQPDIRRTGLSLWASWKP-RKGDDDEDTTPE----KKRI 113

Query: 213  TAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV-------------RPS 259
              +  L   + ++DE  +++GL+  YARP+WMIL  LP+PPPPV             R  
Sbjct: 114  FPQDALNTFRTLTDETLEMMGLSLDYARPEWMILTALPVPPPPVRPSISVDGSGQGSRGE 173

Query: 260  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
            DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DNE+ G  +A  +SG
Sbjct: 174  DDLTFKLGDIIRANQAVLRTEVDGTPDHIKVDLCDLLQYHIATYMDNEIAGLDKAQHKSG 233

Query: 320  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
            RPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPET
Sbjct: 234  RPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPET 293

Query: 380  VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHL 439
            VT +NIE+LK LV  GP   PG   A+Y+IRD G+R+DLR+ K++ +  L+ G+KVERH+
Sbjct: 294  VTAFNIEKLKRLVANGPSEHPG---ARYVIRDTGERIDLRHHKRAGEMSLQYGWKVERHI 350

Query: 440  NDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFE 499
             DG                         YST RLNLSVT+PYNADFDGDEMN+HVPQS E
Sbjct: 351  QDGXXXXXXXXXXXXXXXXX----XXXXYSTLRLNLSVTTPYNADFDGDEMNLHVPQSEE 406

Query: 500  TRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF 559
            +RAE+  L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++  MNIL+W  ++
Sbjct: 407  SRAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREHVMNILLWVPEW 466

Query: 560  DGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGE 619
            DG +PQP I+KP P WTGKQV ++I+P  +NL R  A   D     + + DT + + +G 
Sbjct: 467  DGVIPQPAIIKPTPRWTGKQVISMILPGALNLERLDAKGEDP---FVPSNDTGLMVLEGN 523

Query: 620  LLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 679
            L+ G   KK +GTS G +IH I+ E G +AA  F    Q +VNYWLL N FSIGIGDT+ 
Sbjct: 524  LMFGMFNKKFVGTSAGGIIHTIFNEFGHEAAMAFFNGAQCVVNYWLLHNGFSIGIGDTVP 583

Query: 680  DAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGS 739
            D  T+  I   +   K  V  +  +A  + LEP PG  + ++FE+KV   LN ARD+AG+
Sbjct: 584  DPDTVIKIQAAVDTKKAEVDEITVRAYKEDLEPSPGMNVRQTFESKVMNSLNQARDQAGT 643

Query: 740  SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDD 799
            + + SL + NN   M  AGSKGS INI+QMTA VGQQ VEGKRIPFGF  RTLPHF KDD
Sbjct: 644  ATEDSLKDLNNGITMARAGSKGSTINIAQMTAIVGQQAVEGKRIPFGFKYRTLPHFAKDD 703

Query: 800  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
            Y   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E++ VK
Sbjct: 704  YSAPSRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVK 763

Query: 860  YDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM---DEENWNP 916
            YD TVR+S G+V+QF+YGEDG+D   IE+Q +D + M    F+  +  ++   D   W  
Sbjct: 764  YDSTVRDSRGNVVQFIYGEDGLDGAHIENQKVDIITMSDKAFNNRYAVDIMSGDVSMWR- 822

Query: 917  NYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNA 976
              +LQ    +++   EL+++FD  ++KL   R  L  ++    + S  LP+N+ R+I  +
Sbjct: 823  GKLLQAR--EIQGDTELQEMFDEVLEKLRDARIFL-RKMGKGTEDSMQLPLNIGRIIDQS 879

Query: 977  QKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFA 1036
            QK FK+     +D+    V+ +VD+L +RL VV GED +S EAQ NATL  N  LRS  A
Sbjct: 880  QKNFKIRRGDRTDLDARHVLTSVDQLLDRLIVVRGEDAISKEAQSNATLLLNAQLRSRLA 939

Query: 1037 SKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQS 1080
             KR++ EH L R AF+ +IG IESRF+ +   PGEM+G +AAQS
Sbjct: 940  YKRLVLEHGLNRLAFDNIIGGIESRFVAAGANPGEMVGVLAAQS 983


>gi|312273885|gb|ADQ57312.1| RNA polymerase II largest subunit, partial [Nosema sp. CPP 04-02]
          Length = 988

 Score =  906 bits (2341), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1061 (45%), Positives = 662/1061 (62%), Gaps = 126/1061 (11%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+EL+KPMFH+G++  +  I+  +CF CS++               +N KN L  I    
Sbjct: 1    HIELSKPMFHVGYISKIKKILECICFYCSRLKVSR-----------KNLKNDLNAIWAVS 49

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            K K  CEG            E  ++   GCG +QP +  EG+ ++A  K +         
Sbjct: 50   KGKMVCEG------------ESTEEGFTGCGNKQPVIKKEGLNLVAFMKGE--------- 88

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS-- 259
              +  E K  L  E+V  + K+ISDED ++LG +  Y+RP+W+IL VL +PPP VRPS  
Sbjct: 89   --DNTEGKVILNGEKVHSIFKKISDEDIEVLGFDLAYSRPEWLILTVLLVPPPSVRPSIV 146

Query: 260  --------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQ 311
                    DDLTH+L+ II+ N  L++ E  GAP HII ++ QLLQFH+AT  DN++ GQ
Sbjct: 147  MEGMLRAEDDLTHKLSDIIKSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLIDNDISGQ 206

Query: 312  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 371
            P+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSAR+VIT D  I+++++GVP  +A
Sbjct: 207  PQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVA 266

Query: 372  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLEL 431
               T+PE +TP+NIE+L++LV  GP+  P   GA Y+IR DGQR+DL +     D  LE 
Sbjct: 267  KIHTFPEKITPFNIEKLEKLVANGPNEYP---GANYVIRTDGQRIDLNF--NRGDIKLEE 321

Query: 432  GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 491
            GY VERH+ +GD +LFNRQPSLHKMS+MGH++++M   TFRLNLSVTSPYNADFDGDEMN
Sbjct: 322  GYIVERHMQNGDTILFNRQPSLHKMSMMGHKVRVMAGKTFRLNLSVTSPYNADFDGDEMN 381

Query: 492  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 551
            +H+PQ++ + +E+ E+ MVPK I+ PQSN+PVMGIVQDTL G R  T RD F +K+  M 
Sbjct: 382  LHMPQNYNSISELEEICMVPKQILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNEMMQ 441

Query: 552  ILMWWEDFD---------------------------GKVPQPTILKPRPLWTGKQVFNLI 584
            +  +  DF+                           G + +P I KP+ LWTGKQ+ + I
Sbjct: 442  VF-YSIDFEKYYDIGLDSVIKKGKKLDMGAKEYSLMGLLSKPAIQKPKQLWTGKQILSFI 500

Query: 585  IPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
             P   N+F   + +   +  +    DT V I  GE++SG + KK +G + G L+H+I  +
Sbjct: 501  FP---NVFYKNSSNESRENDLENVSDTSVVICGGEIMSGIIDKKAVGATQGGLVHIIAND 557

Query: 645  VGPDAARKFLGHTQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
             G      F+   Q ++  +L+  + FS+GIGDT+AD+ T++ +   I K+K++V  +I+
Sbjct: 558  FGYSRVTLFIDDIQKIITKFLMNIHVFSMGIGDTVADSDTLKYVKQAIEKSKDSVDEIIR 617

Query: 704  QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
            +AQ+  L+  PG TM ESFE++VN VLN ARD +G S QKSL++ NN+KAMV +GSKGSF
Sbjct: 618  KAQNNRLDRLPGMTMKESFESQVNYVLNKARDVSGISTQKSLNKCNNMKAMVLSGSKGSF 677

Query: 764  INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
            INISQ+TACVGQQNVEGKRIPFGF  RTLPHF K+DY  +SRGFVENSYL GL+P+EFFF
Sbjct: 678  INISQVTACVGQQNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFF 737

Query: 824  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
            HAMGGREGLIDTA+KT+ETGYIQRRLVKAMED  V+ DG+VR + G+V Q+LYGEDG+D+
Sbjct: 738  HAMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVRLDGSVRGATGNVYQYLYGEDGLDA 797

Query: 884  VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
             ++E Q + +   K++ F       +D  + +  Y L++     +  K L    D E+QK
Sbjct: 798  TFLEMQRVQTTNFKEAHF-------IDMFSTDSTYALKKGAVSDQIYKLL--CSDIELQK 848

Query: 944  LEADRYQ-LATEIATS---GDSSWPL-----------PVNLKRLIWNAQKTFKVDPRRPS 988
            +  D Y  L   +  S    D S  +           P NL+R+I NA   F+  P    
Sbjct: 849  ILYDEYDWLVKHVFDSYNPEDESQNVVNRLYQNVIASPCNLQRIIHNAISMFQ-SP--VG 905

Query: 989  DMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTR 1048
            D+ P  ++E    L        G + L            N+L+R+  + K +L  ++L  
Sbjct: 906  DVSPYFILETTKDL-------GGTNEL-----------LNVLIRTHLSVKNILTVYKLDL 947

Query: 1049 EAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1089
              F WVI  I+ + + S VA  EM+G +AAQS+GEPATQMT
Sbjct: 948  NGFNWVIEAIKDKIMSSKVAHNEMVGTLAAQSVGEPATQMT 988


>gi|120561172|gb|ABM26981.1| RNA polymerase II largest subunit [Nosema trichoplusiae]
          Length = 989

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1062 (45%), Positives = 663/1062 (62%), Gaps = 126/1062 (11%)

Query: 81   GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDA 140
            GH+EL+KPMFH+G++  +  I+  +CF CS++               +N K  L  I   
Sbjct: 1    GHIELSKPMFHVGYISKIKKILECICFYCSRLKVSR-----------KNLKADLNAIWAV 49

Query: 141  CKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
             K K  CEG            E  ++   GCG +QP +  EG+ ++A  K +        
Sbjct: 50   SKGKMVCEG------------ELTEEGFNGCGNKQPVIKKEGLNLVAFMKGE-------- 89

Query: 201  QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS- 259
               +  E K  L  E+V  + K+ISDED ++LG +  Y+RP+W+IL VL +PPP VRPS 
Sbjct: 90   ---DNSEGKVILNGEKVHSIFKKISDEDIEVLGFDLAYSRPEWLILTVLLVPPPSVRPSI 146

Query: 260  ---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPG 310
                     DDLTH+L+ II+ N  L++ E  GAP HII ++ QLLQFH+AT  DN++ G
Sbjct: 147  VMEGMLRAEDDLTHKLSDIIKSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLIDNDISG 206

Query: 311  QPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSI 370
            QP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSAR+VIT D  I+++++GVP  +
Sbjct: 207  QPQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEV 266

Query: 371  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 430
            A   T+PE +TP+NIE+L++LV  GP+  PG   A Y+IR DGQR+DL +     D  LE
Sbjct: 267  AKIHTFPEKITPFNIEKLEKLVANGPNEYPG---ANYVIRTDGQRIDLNF--NRGDIKLE 321

Query: 431  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 490
             GY VERH+ +GD +LFNRQPSLHKMS+MGH++++M   T RLNLSVTSPYNADFDGDEM
Sbjct: 322  EGYIVERHMQNGDTILFNRQPSLHKMSMMGHKVRVMEGKTLRLNLSVTSPYNADFDGDEM 381

Query: 491  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
            N+H+PQ++ + AE+ E+ MVPK I+ PQSN+PVMGIVQDTL G R  T RD F +K+  M
Sbjct: 382  NLHMPQNYNSIAELEEICMVPKQILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNEMM 441

Query: 551  NILMWWEDFD---------------------------GKVPQPTILKPRPLWTGKQVFNL 583
             +L +  DFD                           G + +P I KP+ LWTGKQ+ + 
Sbjct: 442  QVL-YSIDFDKYYDIGLDSVIKKGKKLDMGAKEYSLMGLLSKPAIQKPKQLWTGKQILSF 500

Query: 584  IIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            I P   N+F   + +   +  +    DT V I  GE++SG + KK +G + G L+H+I  
Sbjct: 501  IFP---NVFYKNSSNESRENDLENVSDTSVVICGGEIMSGIIDKKAVGATQGGLVHIIAN 557

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
            + G      F+   Q ++  +L+  + FS+GIGDT+AD+ T++ +   I K+K++V  +I
Sbjct: 558  DFGCSRVTLFIDDIQKIITKFLMNIHVFSMGIGDTVADSDTLKYVKQAIEKSKDSVDEII 617

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
            ++AQ+  L+  PG TM ESFE++VN VLN ARD +G+S QKSL++ NN+KAMV +GSKGS
Sbjct: 618  RKAQNNRLDRLPGMTMKESFESQVNYVLNKARDVSGTSTQKSLNKCNNMKAMVLSGSKGS 677

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
            FINISQ+TACVGQQNVEG+RIPFGF  RTLPHF K+DY  +SRGFVENSYL GL+P+EFF
Sbjct: 678  FINISQVTACVGQQNVEGRRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFF 737

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAMGGREGLIDTA+KT+ETGYIQRRLVKAMED  V+ DG+VR + G+V Q+LYGEDG D
Sbjct: 738  FHAMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVRLDGSVRGATGNVYQYLYGEDGFD 797

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQ 942
            + ++E Q + +   K++ F       +D  + +  Y +++     +  K L    D E+Q
Sbjct: 798  ATFLEMQRVQTTNFKEAHF-------IDMFSSDSTYAVKKGAVSDQIYKLL--CSDIELQ 848

Query: 943  KLEADRYQ-LATEIATS---GDSSWPL-----------PVNLKRLIWNAQKTFKVDPRRP 987
            K+  D Y  L   +  S    D S  +           P NL+R+I+NA   F+  P   
Sbjct: 849  KILYDEYDWLVKHVFDSYNPEDESQNVVNRLYRNVLASPCNLQRIIYNAISMFQ-SP--V 905

Query: 988  SDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLT 1047
             D+ P  ++E    L        G + L            N+L+R+  + K +L  ++L 
Sbjct: 906  GDVSPYFILETTRDL-------GGTNEL-----------LNVLIRTHLSVKNILTVYKLD 947

Query: 1048 REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1089
               F WVI  I+ + + S VA  EM+G +AAQS+GEPATQMT
Sbjct: 948  LNGFNWVIEAIKDKVMSSRVAHNEMVGTLAAQSVGEPATQMT 989


>gi|327242109|gb|AEA40833.1| RNA polymerase II largest subunit [Monocercomonas colubrorum]
          Length = 1019

 Score =  904 bits (2335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/1040 (45%), Positives = 668/1040 (64%), Gaps = 55/1040 (5%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELA+P+FHIG++  V  +++ VC NC ++L    + + ++ +   + K RL +IL+  
Sbjct: 1    HIELAEPVFHIGYVDVVYKLLQCVCHNCGRLLVSYSEPELQKIVLNYHGKQRLVRILELT 60

Query: 142  KNKTKC------EGGD-------------EIDVPGQDG--EEPLKKNKGGCGAQQPKLTI 180
            K++ +C       G D             E+ V  +DG  ++  +K    CG   P++T 
Sbjct: 61   KSRHQCSHSKTPNGEDVHPDIVKNPAFWKELGVVDEDGNYDQDFRK-MDPCGQMIPEITK 119

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
            +G   I      R   D              L+A++VL +LK +S  D ++LG + + A+
Sbjct: 120  DGDFTIKMKDPSRNAQD-------------ALSAKKVLEILKHLSPLDTKILGFDEEKAK 166

Query: 241  PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
            P+WMI  +LP+PPP VRP+          DD+TH+LA I++ N +L++   +        
Sbjct: 167  PEWMICTILPVPPPHVRPAILMDGSNMCQDDVTHKLASIVQVNNHLKKLIADNVQLVAKK 226

Query: 291  EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
            E+  LLQ+HI+TYF N+ P   RAT ++GRPIK+I  RLK KEG IRG+L GKRV+FSAR
Sbjct: 227  EYIDLLQYHISTYFINDKPSLQRATTKNGRPIKAISQRLKGKEGHIRGHLSGKRVNFSAR 286

Query: 351  TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
            +VI+PDP+I+IDQ+GVP  IA  LT+PE VT  N + L++LV  GP     + GA YII 
Sbjct: 287  SVISPDPSISIDQVGVPLEIAKVLTFPEVVTARNRDYLQKLVHNGP---DHQDGANYIIT 343

Query: 411  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
              G R++L   ++ S  HL     VERHL + D V+FNRQPSLHKMS+MGHR  +MP ST
Sbjct: 344  PTGIRINLAVTEERSALHLADNAIVERHLREDDIVIFNRQPSLHKMSMMGHRAHLMPGST 403

Query: 471  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
            FRLNL VT+PYNADFDGDEMN+HVPQS   RAEV  +M+VP  I++PQSN+P++G+VQD 
Sbjct: 404  FRLNLCVTTPYNADFDGDEMNLHVPQSQSARAEVKHIMLVPNQIITPQSNKPIIGLVQDA 463

Query: 531  LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
            LL CR +T RDTF+ ++  MN++MW +  D  +P P ILKP+ LW+GKQVF+L +P +IN
Sbjct: 464  LLACRLMTLRDTFLTRNQVMNLMMWIKKRDVILPPPCILKPQQLWSGKQVFSLFLP-EIN 522

Query: 591  LFRTAAWHAD-NDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
                  + +D  DK  L+  D  V I  G+LL+G L  +T+  S  SL+HVI      D 
Sbjct: 523  ---HDGYSSDVKDKSWLSYDDKRVIIRNGKLLAGILDSRTVARSEKSLVHVIINSWDKDI 579

Query: 650  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
            AR FL  TQ +VN WL    FSIGI D IA  KT+  +++ +   K  V N+ + A   +
Sbjct: 580  ARDFLNQTQLVVNNWLESRGFSIGIIDCIASEKTLIKVSEILDNLKEKVDNITRSALSGT 639

Query: 710  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
            +  +PG T+ ESFE +VN   N   +++G+  Q      N+L  MV AGSKGS INISQ+
Sbjct: 640  MTIQPGMTLKESFEQEVNSNSNDFINKSGAIVQNDARFWNSLMQMVAAGSKGSKINISQI 699

Query: 770  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
             ACVGQQNVEGKR+P GF +RTLPHF KDD G E++GF E+SY++GLTP EFFFH+MGGR
Sbjct: 700  LACVGQQNVEGKRVPNGFKNRTLPHFFKDDMGLEAKGFCEHSYIQGLTPPEFFFHSMGGR 759

Query: 830  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
             G+IDTA KTS+TGYIQRRL K ME   V+YDGTVRNSL ++IQF+YG DGMD + +E+Q
Sbjct: 760  TGIIDTACKTSDTGYIQRRLCKFMESHCVQYDGTVRNSLNEIIQFVYGCDGMDPICLETQ 819

Query: 890  TLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLK-TIKELRDVFDAEVQKLEADR 948
            ++  L+M  +EFD+ + F++    +    M QE ID +   I   +DV   E+ +L+  R
Sbjct: 820  SIPLLEMDDNEFDREYEFDLSLPTFGQGIMRQEVIDGMNDNISATKDVLQKEIARLKHFR 879

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP-SDMHPMEVVEAVDKLQERLK 1007
              L  E+  +   S  LPVN+ RLI  AQ+   ++P    SD+HP+ V+++V+KL  +L 
Sbjct: 880  RILREEVFPTATGSVYLPVNIGRLIQTAQQIHNINPHSDRSDLHPIHVIDSVEKLVSKLI 939

Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            VV G+D +  EAQ NATL   +LL S+ A+K ++ +HRL+ +AF +++GE E  F+ S+V
Sbjct: 940  VVKGDDYIQKEAQDNATLLLRVLLYSSLAAKCLIFKHRLSEDAFRYILGEGEHAFIGSIV 999

Query: 1068 APGEMIGCVAAQSIGEPATQ 1087
            +PGEM+G +A QSIGEPATQ
Sbjct: 1000 SPGEMVGTIAGQSIGEPATQ 1019


>gi|157741588|gb|ABV69499.1| RNA polymerase II largest subunit, partial [Verrucaria lecideoides]
          Length = 977

 Score =  903 bits (2334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1007 (48%), Positives = 648/1007 (64%), Gaps = 61/1007 (6%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+  V  ++ +VC NC KI A  D  + + A  +R+ K R + I    + +  C+     
Sbjct: 1    FLGKVKKLLETVCHNCGKIKA-VDSEELRYAHSVRDRKKRFELIWRLSQKQNVCQA---- 55

Query: 154  DVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVE 207
            D P  D ++P+ K K      GGCG  QP +   G+++ A+YK  RK +D++E +PE   
Sbjct: 56   DSP-DDEDDPIAKEKSGKIRHGGCGNAQPAIRKTGLELWAQYKP-RKGDDEEEAVPE--- 110

Query: 208  RKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV----------- 256
             K  +   + L V + ++DE  + LGL+  +ARP+WMILQ LP+PPPPV           
Sbjct: 111  -KSQIWPAQALQVFQHLTDETLETLGLSVDFARPEWMILQSLPVPPPPVRPSISVDGSGQ 169

Query: 257  --RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRA 314
              R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN++    +A
Sbjct: 170  GQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDNDIANLDKA 229

Query: 315  TQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNL 374
              +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  L
Sbjct: 230  QHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 289

Query: 375  TYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK 434
             YPETVT +NIERLK+LV  GP   P   GA+YIIR++ +R+DLRY K ++D  L  G+K
Sbjct: 290  IYPETVTRFNIERLKQLVTNGPQMHP---GARYIIRENNERIDLRYHKNTADIALRTGWK 346

Query: 435  VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHV 494
            VERH+ DG                              LNLSVT+PYNADFDGDEMN+HV
Sbjct: 347  VERHIMDG-------XXXXXXXXXXXXXXXXXXXXXXXLNLSVTTPYNADFDGDEMNLHV 399

Query: 495  PQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM 554
            PQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++  MNI++
Sbjct: 400  PQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREAVMNIML 459

Query: 555  WWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG------ILTA 608
            W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R      D   G         A
Sbjct: 460  WVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPPALNLVRI-----DGKPGQPPGERFAPA 514

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            GD+ + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VNYWLL N
Sbjct: 515  GDSGLFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHN 574

Query: 669  AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
             FSIGIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+FE+KV+ 
Sbjct: 575  GFSIGIGDTVPDVGTVEKIKLEVDKKKTEVERITQSAVAEELEALPGMNVRETFESKVSA 634

Query: 729  VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
             LN ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKRIPFGF 
Sbjct: 635  ALNGARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPFGFK 694

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             RTLPHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRR
Sbjct: 695  YRTLPHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRR 754

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            LVKA+E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+K FR +
Sbjct: 755  LVKALEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSNEAFEKQFRVD 814

Query: 909  MDEENWNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQLAT--EIATSGDSS 962
            + E    P  ++ Q+ ++    I    +++ +FD E  +L  DR  L +  + ATS D  
Sbjct: 815  LME----PKKLVWQDRLEQASEIHGDVDVQKLFDEEYDQLVDDRQFLRSIKKAATSADEM 870

Query: 963  WPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKN 1022
             PLP+N+ R++  A+ TFK+    PSD+HP  V+  V +L +RL +V GED +S+EAQ+N
Sbjct: 871  MPLPMNVVRILNQARTTFKIQSGAPSDLHPSYVIPKVKQLLDRLVIVRGEDRISLEAQEN 930

Query: 1023 ATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1069
            ATL     LRS  A KR++ E+ L R AF+ V+G IE+RF+++  +P
Sbjct: 931  ATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKAAASP 977


>gi|83320432|gb|ABC02843.1| RNA polymerase II largest subunit, partial [Dimargaris
           bacillispora]
          Length = 753

 Score =  901 bits (2329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/766 (57%), Positives = 556/766 (72%), Gaps = 38/766 (4%)

Query: 82  HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
           H+ELAKP++HIGF+  V  I+  VCF+CS++  D  D+++  A KIR+PK RLKK+   C
Sbjct: 1   HIELAKPVYHIGFITKVKKILECVCFHCSRLRVDMGDNRYVAARKIRDPKARLKKMHAIC 60

Query: 142 KNKTKCEGGDEIDVPGQDGEEPLKKNKGG---------------CGAQQPKLTIEGMKMI 186
           K++ +CE         +DG+    +N  G               CG   P    EG+++ 
Sbjct: 61  KDRKRCEPSAGF----RDGKTAPDENSLGVDTAISFGAKGVPECCGQAHPTFRKEGLRL- 115

Query: 187 AEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMIL 246
             +   + +NDD     +    K+ L A RV+ VLKRI+DE  Q LGL+P +ARP+WMIL
Sbjct: 116 --FMVSKVRNDDGGPAQDT---KEILHAARVVQVLKRIADETIQDLGLSPVFARPEWMIL 170

Query: 247 QVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLL 296
            VLP+PPP VRPS          DDLTH+L  II+ N+ +R  E NGAP HII +  QLL
Sbjct: 171 TVLPVPPPAVRPSIQMDGTSKGEDDLTHKLNDIIKANQRVRDCETNGAPQHIIDQDVQLL 230

Query: 297 QFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPD 356
           ++HIATY +N++ G P+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT D
Sbjct: 231 EYHIATYMNNDVSGIPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGD 290

Query: 357 PTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRL 416
           P ++ID++GVP SIA NLTYPE VTPYNI +L++ V  GP   PG   AKYI+RD+G R+
Sbjct: 291 PNLSIDEVGVPRSIARNLTYPELVTPYNIHQLQQAVRNGPTQHPG---AKYIVRDNGDRI 347

Query: 417 DLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLS 476
           DLRY K   +  L+ G++VERHL  GD V+FNRQPSLHKMS+MGH++++MPYSTFRLNLS
Sbjct: 348 DLRYNKLGGEIPLQYGWRVERHLVSGDLVIFNRQPSLHKMSMMGHKVRVMPYSTFRLNLS 407

Query: 477 VTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRK 536
           VTSPYNADFDGDEMNMHVPQS ETRAE+ E+ MVPK IVSPQ+N+PVMGIVQDTL   R+
Sbjct: 408 VTSPYNADFDGDEMNMHVPQSEETRAEIREICMVPKNIVSPQANKPVMGIVQDTLCAVRR 467

Query: 537 ITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAA 596
            TKRDTF+ KD+ MN+++W  ++DG++PQP ILKP+PLWTGKQ+F++IIP  IN  R  +
Sbjct: 468 FTKRDTFLTKDMVMNLMLWLPNWDGQIPQPCILKPKPLWTGKQIFSMIIPSGINCIRYHS 527

Query: 597 WHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGH 656
            H D++K  ++ GDT V IE G L++G +CKKT+G +   LIHVI  E GP+  + F   
Sbjct: 528 LHPDDEKTDISPGDTKVIIEDGTLVAGIICKKTVGAAESGLIHVIMLERGPEVCKGFFNG 587

Query: 657 TQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR 716
           TQ +VNYW L N FSIGIGDTIADA+T E I  TI+ AK  V  +I  AQ   LE   G 
Sbjct: 588 TQQVVNYWFLHNGFSIGIGDTIADARTAENITQTINHAKQRVNEIIMTAQKDELECLAGM 647

Query: 717 TMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 776
           T+ ESFE+KVN  LN ARD+AG SAQK+L E NN++ MV +GSKGS+IN+SQMTACVGQQ
Sbjct: 648 TLRESFESKVNVELNKARDDAGKSAQKNLKEDNNVRQMVVSGSKGSYINVSQMTACVGQQ 707

Query: 777 NVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
           NVEGKRIPF F +RTLPH+ KDDYGPESRGFVENSYLRGLTPQEFF
Sbjct: 708 NVEGKRIPFCFKNRTLPHYAKDDYGPESRGFVENSYLRGLTPQEFF 753


>gi|83320416|gb|ABC02835.1| RNA polymerase II largest subunit, partial [Physoderma maydis]
          Length = 748

 Score =  901 bits (2328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/755 (59%), Positives = 561/755 (74%), Gaps = 21/755 (2%)

Query: 82  HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
           H+ELA+P+FHIGF+  V  I+  VC++CSK+  D  + KF +A  +R+ + R + I + C
Sbjct: 1   HIELARPVFHIGFLPRVKKILECVCYHCSKLKIDIKNPKFAKAKMLRHRQRRFQAIHELC 60

Query: 142 KNKTKC--EGGDEIDVPGQDGEEPLKKNKG--GCGAQQPKLTIEGMKMIAEYKAQRKKND 197
           K++  C  E  DE  +        L K K   GCG +QP    +G+K+ A +K+    N 
Sbjct: 61  KDRFVCNDENLDEDKMDEDFMSHDLLKRKAHEGCGQKQPAYRRDGLKLFAVWKS----NS 116

Query: 198 DQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPP--- 254
             E  P   E +Q LTA  V  +LKRISDEDC+LLGLNP+++RPDW+IL VLP+PPP   
Sbjct: 117 KDEDAPAGQEGRQPLTAAMVHQILKRISDEDCELLGLNPEFSRPDWLILTVLPVPPPPVR 176

Query: 255 -------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNE 307
                    R  DDLT++LA II+ N +LR+ E +GA  H+++EF  LLQFH+ATY +N+
Sbjct: 177 PSINIDGAARSEDDLTYKLADIIKANASLRKCEHDGAARHVVAEFEMLLQFHVATYMNND 236

Query: 308 LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 367
           + GQP A QRSGRPIKSI  RLK KEGR+RGNLMGKRVDFSARTVIT DP ++ID++GVP
Sbjct: 237 ISGQPAAMQRSGRPIKSIRDRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDEVGVP 296

Query: 368 WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 427
            SIA NLT+PE VT YNI+RL EL+  GP   PG   AKY+IR++G+R+DLR+ +  SD 
Sbjct: 297 RSIAXNLTFPEMVTKYNIDRLLELIRNGPLEHPG---AKYVIRENGERIDLRFARNKSDL 353

Query: 428 HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDG 487
            L+ G+ VERH+NDGD ++FNRQPSLHKMS+MGHRI++MPYSTFRLNLSVTSPYNADFDG
Sbjct: 354 TLQHGWIVERHVNDGDLIIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDG 413

Query: 488 DEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
           DEMNMHVPQS E RAEV E+ MVPK IVSPQ+N+P MGIVQDTL G RK TKRDTF+ K 
Sbjct: 414 DEMNMHVPQSMEARAEVQEICMVPKQIVSPQANKPCMGIVQDTLCGIRKFTKRDTFLSKS 473

Query: 548 VFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILT 607
           + MNIL+W  ++DG +P P I KP+PLWTGKQ+ +LIIP + N     + H DN++  ++
Sbjct: 474 LVMNILLWVPNWDGVIPPPAIFKPKPLWTGKQILSLIIPPRTNCITHHSTHPDNERTDIS 533

Query: 608 AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 667
            GDT V IE G LL+G +CK+T+G+S+G +IHVIW E G + A+ F+   Q +VNYW+LQ
Sbjct: 534 PGDTKVIIEDGCLLAGIVCKRTVGSSSGGVIHVIWNEHGSETAKMFINGCQTIVNYWMLQ 593

Query: 668 NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVN 727
           N FSIGIGDTIAD +TM+TI D ++ AK  V  +I+ A+   LE  PG T++ESFE  VN
Sbjct: 594 NGFSIGIGDTIADDQTMDTITDAVTNAKREVDRIIELARQDKLECLPGMTLIESFEADVN 653

Query: 728 QVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 787
           + LN ARD+AG+SAQ SL E NN+K MV AGSKGS+INISQMTACVGQQNVEGKRIPFGF
Sbjct: 654 KELNGARDKAGNSAQTSLKEQNNVKQMVVAGSKGSYINISQMTACVGQQNVEGKRIPFGF 713

Query: 788 VDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
             RTLPHFTKDD+ PESRGFVENSYLRGLTPQEFF
Sbjct: 714 NFRTLPHFTKDDHSPESRGFVENSYLRGLTPQEFF 748


>gi|111154414|gb|ABH07421.1| RNA polymerase II largest subunit [Pyrgillus javanicus]
          Length = 971

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/988 (48%), Positives = 636/988 (64%), Gaps = 39/988 (3%)

Query: 92   IGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGD 151
            IG +K +L I    C +C KIL DE +  F +ALK R+ K R  KI   CK K KCE   
Sbjct: 2    IGKIKKLLEI---CCHHCGKILMDETNPAFIEALKTRDRKRRFDKIWTLCKTKKKCERDP 58

Query: 152  EIDVPGQDG-EEPLK--KNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
            + D    +  + PLK    +GGCG   P +  +G+K++  +K  +     +E+  E    
Sbjct: 59   QDDSNADENPDHPLKPSSTRGGCGNVAPDIRKDGLKLLGTWKYDKS----EEEDEERRIE 114

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP------------- 255
            K+ +T  + L     IS ED + +GL   YA+P WMIL VLP+PPPP             
Sbjct: 115  KKYITPHQALEAFNHISSEDLEKIGLGSDYAKPTWMILTVLPVPPPPVRPSISVDGTGQG 174

Query: 256  VRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRAT 315
            +R  DDLT++L+ IIR N N+++ +  G+P HI++EF  LLQ+H+ATY DN++ GQP+A 
Sbjct: 175  MRGEDDLTYKLSDIIRANANVKKCKGEGSPGHIVAEFETLLQYHVATYMDNDIAGQPQAM 234

Query: 316  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 375
            Q+SGRPIKSI SRLK KEGR+RGNLMGKRVDFSARTVIT DP +++DQ+GVP +I   LT
Sbjct: 235  QKSGRPIKSIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPYLDLDQVGVPRTICKTLT 294

Query: 376  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 435
            YPETVTPYNI +L ELV  GP+  PG   AKY+IRD G+R+DLR+ K++S+  L+ G+KV
Sbjct: 295  YPETVTPYNISKLHELVRNGPNEHPG---AKYVIRDTGERIDLRHHKRASEITLQYGWKV 351

Query: 436  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 495
            ERHL DGD                                SVTSPYNADFDGDEMN+HVP
Sbjct: 352  ERHLMDGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVTSPYNADFDGDEMNLHVP 411

Query: 496  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 555
            QS E RAE+  L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++  MNI++W
Sbjct: 412  QSEEARAELANLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDIFLSREEVMNIMLW 471

Query: 556  WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKG-----ILTAGD 610
              ++DG +P P +LKPRP WTGKQV ++++P  +NL R      D DKG          D
Sbjct: 472  VPEWDGVIPTPAVLKPRPRWTGKQVISMVLPPNLNLVRI-----DKDKGKEEDKFSPLAD 526

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
              + +++GEL+ G   KK++GTS G +IH I+ E G + A +F    Q +VNYWLL N F
Sbjct: 527  GGLFVDRGELMFGLFNKKSVGTSAGGIIHTIFNEFGHEVALQFFNGAQTVVNYWLLHNGF 586

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            SIGIGDT+ DA T   I + ++  K  V  +   A+++ LEP PG  + E+FE+KV+  L
Sbjct: 587  SIGIGDTVPDAGTTVQIQNEVNIKKEEVAKITAAAENEELEPLPGMNVRETFESKVSAAL 646

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
            N ARDEAGS  + SL + NN   M  AGSKGS INISQMTA VGQQ VEGKRIPFGF  R
Sbjct: 647  NAARDEAGSVTENSLKDLNNAIQMARAGSKGSTINISQMTAIVGQQMVEGKRIPFGFKYR 706

Query: 791  TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
            +LPHF KDDY  +SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLV
Sbjct: 707  SLPHFAKDDYSAQSRGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLV 766

Query: 851  KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD 910
            KA+E++ V+YD T+R++ G+++QF+YGEDG+D   IE+Q +D + M  + F  A RF +D
Sbjct: 767  KALEELTVRYDTTIRDARGNLVQFIYGEDGLDGAHIENQRVDIITMSDAAF--ARRFRVD 824

Query: 911  EENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLK 970
              +  P ++  +  DD +   + + + D E  +L  DR  L + +    D    LP+N++
Sbjct: 825  LMSQKPQFVRGQLADDFRADVDRQKLLDDEWDQLNDDRNFLRS-VRKGVDEMMQLPLNIQ 883

Query: 971  RLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNIL 1030
            R++  A+ TFKVD     D+ P  V+  V KL   L VV G D +S+EAQ+NATL F   
Sbjct: 884  RILDQAKTTFKVDQTSICDLDPAHVIPEVRKLLNELVVVRGTDSISMEAQENATLLFKAQ 943

Query: 1031 LRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            LRS  A KR++ ++RL+  AF  VIG +
Sbjct: 944  LRSRLAFKRLVNDYRLSTVAFNHVIGNV 971


>gi|120561166|gb|ABM26978.1| RNA polymerase II largest subunit [Nosema bombycis]
          Length = 982

 Score =  896 bits (2316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 478/1055 (45%), Positives = 658/1055 (62%), Gaps = 126/1055 (11%)

Query: 81   GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDA 140
            GH+EL+KPMFH+G++  +  I+  +CF CS++ A             +N K  L  I   
Sbjct: 1    GHIELSKPMFHVGYISKIKKILECICFYCSRLKASR-----------KNLKADLNAIWAV 49

Query: 141  CKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
             K K  CEG            E  ++   GCG +QP +  EG+ ++A  K +        
Sbjct: 50   SKGKMVCEG------------ELTEEGFNGCGNKQPVIKKEGLNLVAFMKGE-------- 89

Query: 201  QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS- 259
               +  E K  L  E+V  + K+ISDED ++LG +  Y+RP+W+IL VL +PPP VRPS 
Sbjct: 90   ---DNSEGKVILNGEKVHSIFKKISDEDIEVLGFDLAYSRPEWLILTVLLVPPPSVRPSI 146

Query: 260  ---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPG 310
                     DDLTH+L+ II+ N  L++ E  GAP HII ++ QLLQFH+AT  DN++ G
Sbjct: 147  VMEGMLRAEDDLTHKLSDIIKSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLIDNDISG 206

Query: 311  QPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSI 370
            QP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSAR+VIT D  I+++++GVP  +
Sbjct: 207  QPQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEV 266

Query: 371  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 430
            A   T+PE +TP+NIE+L++LV  GP+  PG   A Y+IR DGQR+DL +     D  LE
Sbjct: 267  AKIHTFPEKITPFNIEKLEKLVANGPNEYPG---ANYVIRTDGQRIDLNF--NRGDIKLE 321

Query: 431  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 490
             GY VERH+ +GD +LFNRQPSLHKMS+MGH++++M   TFRLNLSVTSPYNADFDGDEM
Sbjct: 322  EGYIVERHMQNGDTILFNRQPSLHKMSMMGHKVRVMEGKTFRLNLSVTSPYNADFDGDEM 381

Query: 491  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
            N+H+PQ++ + AE+ E+ MVPK I+ PQSN+PVMGIVQDTL G R  T RD F +K+  M
Sbjct: 382  NLHMPQNYNSIAELEEICMVPKQILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNEMM 441

Query: 551  NILMWWEDFD---------------------------GKVPQPTILKPRPLWTGKQVFNL 583
             +L +  DFD                           G + +P I KP+ LWTGKQ+ + 
Sbjct: 442  QVL-YSIDFDKYYDIGLDSVIKKGKKLDMGAKEYSLMGLLSKPAIQKPKQLWTGKQILSF 500

Query: 584  IIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            I P   N+F   + +   +  +    DT V I  GE++SG + KK +G + G L+H+I  
Sbjct: 501  IFP---NVFYKNSSNESRENDLENVSDTSVVICGGEIMSGIIDKKAVGATQGGLVHIIAN 557

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLI 702
            + G      F+   Q ++  +L+  + FS+GIGDT+AD+ T++ +   I K+K++V  +I
Sbjct: 558  DFGCSRVTLFIDDIQKIITKFLMNIHVFSMGIGDTVADSDTLKYVKQAIEKSKDSVDEII 617

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
            ++AQ+  L+  PG TM ESFE++VN VLN ARD +G+S QKSL++ NN+KAMV +GSKGS
Sbjct: 618  RKAQNNRLDRLPGMTMKESFESQVNYVLNKARDVSGTSTQKSLNKCNNMKAMVLSGSKGS 677

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
            FINISQ+TACVGQQNVEGKRIPFGF  RTLPHF K+DY  +SRGFVENSYL GL+P+EFF
Sbjct: 678  FINISQVTACVGQQNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFF 737

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            FHAMGGREGLIDTA+KT+ETGYIQRRLVKAMED  V+ DG+VR + G+V Q+LYGEDG D
Sbjct: 738  FHAMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVRLDGSVRGATGNVYQYLYGEDGFD 797

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQ 942
            + ++E Q + +   K++ F       +D  + +  Y +++     +  K L    D E+Q
Sbjct: 798  ATFLEMQRVQTTNFKEAHF-------IDMFSSDSTYAVKKGAVSDQIYKLL--CSDIELQ 848

Query: 943  KLEADRYQ-LATEIATS---GDSSWPL-----------PVNLKRLIWNAQKTFKVDPRRP 987
            K+  D Y  L   +  S    D S  +           P NL+R+I+NA   F+  P   
Sbjct: 849  KILYDEYDWLVKHVFDSYNPEDESQNVVNRLYRNVLASPCNLQRIIYNAISMFQ-SP--V 905

Query: 988  SDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLT 1047
             D+ P  ++E    L        G + L            N+L+R+  + K +L  ++L 
Sbjct: 906  GDVSPYFILETTKDL-------GGTNEL-----------LNVLIRTHLSVKNILTVYKLD 947

Query: 1048 REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIG 1082
               F WVI  I+ + + S VA  EM+G +AAQS+G
Sbjct: 948  LNGFNWVIEAIKDKVMSSRVAHNEMVGTLAAQSVG 982


>gi|123979326|gb|ABM81488.1| RNA polymerase II largest subunit [Lecanora achariana]
          Length = 791

 Score =  894 bits (2310), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/805 (55%), Positives = 577/805 (71%), Gaps = 29/805 (3%)

Query: 94  FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEG---G 150
           FM  +  I+ +VC NC KIL DE +  F +AL+ R+PK R   +   CK K  CE     
Sbjct: 1   FMTKIKKILETVCHNCGKILVDESNPAFTEALRYRDPKRRFDAVWRLCKPKMICEQTVTA 60

Query: 151 DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
           D  D      +EP K + GGCG  QP++  EG+K+   YK Q+   +++ Q PE    K+
Sbjct: 61  DNDDSDQGKSKEP-KHDHGGCGNIQPEIRREGLKLNGTYKPQKGDEENEGQQPE----KK 115

Query: 211 TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV------------RP 258
            ++A+  L + + IS +D + +GL+  YARP+WMI+ VLP+PPPPV            R 
Sbjct: 116 PISAQMALNIFRHISTDDIRRMGLSNDYARPEWMIITVLPVPPPPVRPSISVDGGNGPRG 175

Query: 259 SDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRS 318
            DDLT++L  IIR N N+RR E  G+PAH+++EF QLLQFH+ATY DN++ GQP+A Q+S
Sbjct: 176 EDDLTYKLGDIIRANGNVRRCETEGSPAHVVNEFEQLLQFHVATYMDNDIAGQPQALQKS 235

Query: 319 GRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPE 378
           GRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTYPE
Sbjct: 236 GRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLTYPE 295

Query: 379 TVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERH 438
           TVTPYNI++L +LV+ GP+  PG   AKY+IRD G+R+DLR+ K++ +  L+ G+KVERH
Sbjct: 296 TVTPYNIQKLHQLVKNGPNEHPG---AKYVIRDSGERIDLRHHKRAGEISLQYGWKVERH 352

Query: 439 LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
           +              HK S+MGHR+++MP+STFRLNLSVTSPYNADFDGDEMN+HVPQS 
Sbjct: 353 IVXXXXXXXXXXXXXHKESMMGHRVRVMPHSTFRLNLSVTSPYNADFDGDEMNLHVPQSE 412

Query: 499 ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
           ETRAEV +L MVP  IVSPQ N P+MGIVQDTL G  K+ +RD F+ K+  MNIL+W  D
Sbjct: 413 ETRAEVNQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKMCRRDVFLTKEQVMNILLWVPD 472

Query: 559 FDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKG 618
           +DG +PQP ILKPR +WTGKQ+ +L+IP  +NL RT+      D+G     D  + I  G
Sbjct: 473 WDGVIPQPAILKPRSMWTGKQLISLVIPNGLNLIRTS------DEGPSPLNDDGLFIHNG 526

Query: 619 ELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
           +L+ G L KK++G S G ++H+++ E G +AA  F    Q +VN+WLL N FSIGIGDTI
Sbjct: 527 DLMYGLLSKKSVGASGGGIVHIVYNEKGWEAAMSFFNGAQTVVNHWLLHNGFSIGIGDTI 586

Query: 679 ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
            D  T++ I D ++  K +V  + + A +  LE  PG  + E+FE+KV++ LN ARDEAG
Sbjct: 587 PDRNTIQKIEDVVTAQKADVAIITRSATENVLETLPGMNVRETFESKVSKALNKARDEAG 646

Query: 739 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
           ++ + SL + NN   M  +GSKGS INISQMTA VGQQ+VEGKRIPFGF  RTLPHFTKD
Sbjct: 647 TATEDSLKDLNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKD 706

Query: 799 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
           DY PESRGFVENSYLRGLTP EFFF AM GREGLIDTAVKT+ETGYIQRRLVKA+ED+M 
Sbjct: 707 DYSPESRGFVENSYLRGLTPTEFFFRAMAGREGLIDTAVKTAETGYIQRRLVKALEDVMA 766

Query: 859 KYDGTVRNSLGDVIQFLYGEDGMDS 883
           KYDGTVRNSLGD++QF+YGEDG+D 
Sbjct: 767 KYDGTVRNSLGDIVQFIYGEDGLDG 791


>gi|327242111|gb|AEA40834.1| RNA polymerase II largest subunit [Monocercomonas sp. ATCC 50210]
          Length = 1019

 Score =  894 bits (2309), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 479/1039 (46%), Positives = 665/1039 (64%), Gaps = 53/1039 (5%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ELA+P+FHIG++  V  I++ VC NC ++L    + + +  +   + K RL KI +  
Sbjct: 1    HIELAEPVFHIGYIDIVYKILQCVCHNCGRLLVSYAEPELQHIVLNYHGKQRLIKIHELL 60

Query: 142  KNKTKC--EGGDEIDVPGQDG-EEPLKKNKGG-----------------CGAQQPKLTIE 181
            K++  C    G  ID    D  ++P   N+ G                 CG   P+++ E
Sbjct: 61   KSRKSCCPSKGQNIDESCPDKVKDPAFWNELGVFKDDDDYDEDFRNVQPCGQTVPEISKE 120

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
                  + K   K + D             L+A+ VL +LK ++  D ++LG N + ARP
Sbjct: 121  S-DFTLKMKTPSKSSSD------------ILSAKSVLEILKHMNIYDIRVLGFNTERARP 167

Query: 242  DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            +WMI  +LP+PPP VRP+          DD+TH+LA I++ N +L++  ++ A      +
Sbjct: 168  EWMISTILPVPPPHVRPAIVMDSSRPSQDDVTHKLATILQTNNHLKKLIQDNAQQVAQQD 227

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
              ++LQ+HI+TY  N+ P   RAT ++GRPIK+I  RLK KEG IRG+L GKRV+FSAR+
Sbjct: 228  AIEMLQYHISTYLINDKPALQRATTKNGRPIKAISQRLKGKEGHIRGHLSGKRVNFSARS 287

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VI+PDP+I+IDQ+GVP  IA  LT+PE VTP N E L++LV  GP     + GA YII  
Sbjct: 288  VISPDPSISIDQVGVPLEIAKVLTFPEVVTPRNREYLQQLVYNGP---DAQQGANYIITP 344

Query: 412  DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
             G R++L   ++ S  HL     VERHL D D V+FNRQPSLHKMS+MGHR  +MP STF
Sbjct: 345  QGIRINLAVTEERSALHLNDNAIVERHLRDDDIVIFNRQPSLHKMSMMGHRAYLMPGSTF 404

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            RLNL  T+PYNADFDGDEMN+HVPQS   RAEV  +M VP  I+SPQ+N+P++G+VQD L
Sbjct: 405  RLNLCDTTPYNADFDGDEMNLHVPQSQTARAEVKHIMFVPNQIISPQANKPIIGLVQDAL 464

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
            L CR +T RDTF+ ++  MN++MW +  D  +P P ILKP+ LW+GKQVF+L +P +IN 
Sbjct: 465  LACRLMTLRDTFLNRNQVMNLMMWIKKRDVVLPPPCILKPQQLWSGKQVFSLFLP-EIN- 522

Query: 592  FRTAAWHADN-DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
                A+ ADN D   L   D  V I  G+LL+G L  KT+  S  SL+HV+      D A
Sbjct: 523  --HDAFSADNKDDSWLPVDDKRVIIRDGKLLAGILDLKTVAKSEKSLVHVVINSWDKDIA 580

Query: 651  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
            R FL  TQ +VN WL    FSIGI D IA  +T+E +++ +   K +V  +   A + +L
Sbjct: 581  RDFLNQTQLVVNNWLELRGFSIGIIDCIASPRTLEKVSEQLGDLKKSVDEITHSALNGTL 640

Query: 711  EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
            + +PG T+ E+FE++VN   N   +++G   +      N+L  MV AGSKGS INISQ+ 
Sbjct: 641  KIQPGMTLKETFESEVNTRSNDFINKSGDVVKNDSRFWNSLMQMVAAGSKGSKINISQIL 700

Query: 771  ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
            ACVGQQNVEGKR+P GF +RTLPH+ KDD G E++GF E+SY++GLTP EFFFH+MGGR 
Sbjct: 701  ACVGQQNVEGKRVPNGFKNRTLPHYFKDDVGLEAKGFCEHSYIQGLTPPEFFFHSMGGRT 760

Query: 831  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
            G+IDTA KTS+TGYIQRRL K ME   V+YDGT+RNSL +VIQFLYG DGMD + +E+Q 
Sbjct: 761  GIIDTACKTSDTGYIQRRLCKFMESHCVQYDGTIRNSLNEVIQFLYGTDGMDPICLETQK 820

Query: 891  LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDL-KTIKELRDVFDAEVQKLEADRY 949
            +  L M  ++F   + F++    +    M  + ID++ + I   R + + E ++L   R 
Sbjct: 821  IRLLSMDDNQFRNEYEFDLSLPTFGQGIMNADTIDEMNENISATRTILNRETERLLHFRK 880

Query: 950  QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRR-PSDMHPMEVVEAVDKLQERLKV 1008
             L  EI  SG+ S  LPVN+ RL+  AQ+T  ++P    SD+HP+ V+E+V+ +  +L V
Sbjct: 881  LLREEIFPSGEGSVYLPVNITRLLETAQQTHGINPHSDKSDLHPINVIESVENVINKLVV 940

Query: 1009 VPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVA 1068
            VPG+D +S EAQ NATL   ILL S  A+K ++ ++RL   AF++V+GE+E  F++S+V+
Sbjct: 941  VPGDDYISKEAQDNATLLLRILLYSNLAAKTLIFKYRLNEIAFKYVLGEVEVAFVKSIVS 1000

Query: 1069 PGEMIGCVAAQSIGEPATQ 1087
            PGEM+G +A QSIGEPATQ
Sbjct: 1001 PGEMVGAIAGQSIGEPATQ 1019


>gi|157741550|gb|ABV69480.1| RNA polymerase II largest subunit, partial [Thelidium decipiens]
          Length = 977

 Score =  887 bits (2292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 482/1003 (48%), Positives = 645/1003 (64%), Gaps = 53/1003 (5%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+  V  ++ +VC NC KI A  D    + A+ +R+ K R   +    + +  C+     
Sbjct: 1    FLGKVKKLLETVCHNCGKIKA-VDSEDLRYAVSVRDRKKRFDLVWRLSQKQNVCQA---- 55

Query: 154  DVPGQDGEEPLKKNKGG------CGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVE 207
            D P +D ++P  K KGG      CG  QP +   G+++ A+YK  RK +D++E +PE   
Sbjct: 56   DSP-EDEDDPNAKEKGGKIRHGGCGNAQPAIRKSGLELWAQYKP-RKGDDEEETVPE--- 110

Query: 208  RKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV----------- 256
             K  +   + L V + ++DE    LG+N  +ARP+WMILQ LP+PPPPV           
Sbjct: 111  -KSQIWPAQALQVFQHLTDETLDTLGMNLDFARPEWMILQSLPVPPPPVRPSISVDGSGQ 169

Query: 257  --RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRA 314
              R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN++    +A
Sbjct: 170  GQRGEDDLTFKLGDIIRANQNLIRINTEGAPDHIAKELQALLQYHVATYMDNDIANLDKA 229

Query: 315  TQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNL 374
              +SGRPIKSI +RLK KEGR+R +LMGKRVDFSARTVIT DP +++D++GVP SIA  L
Sbjct: 230  QHKSGRPIKSIRARLKGKEGRLRQSLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTL 289

Query: 375  TYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYK 434
            TYPETVTP+NI +LK L+  GP   P   GA+YIIR++ +R+DLRY K      L+ G+K
Sbjct: 290  TYPETVTPFNISKLKNLIIRGPENHP---GARYIIRENNERIDLRYHKDLKGIALKTGWK 346

Query: 435  VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHV 494
            VERH+ DG                              LNLSVT+PYNADFDGDEMN+HV
Sbjct: 347  VERHIMDG-------XXXXXXXXXXXXXXXXXXXXXXXLNLSVTTPYNADFDGDEMNLHV 399

Query: 495  PQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM 554
            PQS E+RAE+ +L +VP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++  MNI++
Sbjct: 400  PQSEESRAELAQLCVVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREAVMNIML 459

Query: 555  WWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA--GDTL 612
            W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     A    G   A  GD+ 
Sbjct: 460  WVPDWDGVIPQPAIFKPRPRWTGKQIISMVLPPALNLVRIDG-KASQPPGERFAPVGDSG 518

Query: 613  VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSI 672
            + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VNYWLL N FSI
Sbjct: 519  LFVADGQLMFGLFNKKSVGTGSNGVIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNGFSI 578

Query: 673  GIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNT 732
            GIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+FE+KV+  LN 
Sbjct: 579  GIGDTVPDFGTVEKIKFEVDKKKAEVERITESAVAEDLEALPGMNVRETFESKVSAALNG 638

Query: 733  ARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTL 792
            ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKRIPFGF  RTL
Sbjct: 639  ARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPFGFKYRTL 698

Query: 793  PHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKA 852
            PHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA
Sbjct: 699  PHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 758

Query: 853  MEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEE 912
            +E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M    F+K FR ++ E 
Sbjct: 759  LEEVTVKYDSTVRDSRGNIVQFVYGEDGLDGAHIESQRVDVIAMSDHAFEKLFRVDLME- 817

Query: 913  NWNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQLAT--EIATSGDSSWPLP 966
               P  ++ Q+ ++    I    +++ +FD E ++L  DR  L +  + ATSGD   PLP
Sbjct: 818  ---PKKLVWQDRLEQASEIHGDVDVQKLFDEEYEQLMEDRNFLRSIKKAATSGDEMMPLP 874

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N+ R++  A+ TFK+     SD+HP  V+  + +L ERL +V GED +S+EAQ+NATL 
Sbjct: 875  MNVVRILNQARTTFKIQSGALSDLHPSYVIPKIKQLLERLIIVRGEDRISLEAQENATLL 934

Query: 1027 FNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1069
                LRS  A KR++ E+ L R AF+ V+G IE+RF++++ +P
Sbjct: 935  IKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAIETRFIKAIASP 977


>gi|83320464|gb|ABC02859.1| RNA polymerase II largest subunit, partial [Scutellospora
           heterogama]
          Length = 639

 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/621 (67%), Positives = 503/621 (80%), Gaps = 7/621 (1%)

Query: 257 RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQ 316
           R  DDLTH+LA I++ N+N++R E  G PAH+++EF  LLQFH ATY DNE+ GQP+A Q
Sbjct: 22  RGEDDLTHKLADILKANQNVKRYETEGHPAHVVNEFEALLQFHCATYMDNEMAGQPQALQ 81

Query: 317 RSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTY 376
           +SGRP+KSI +RLK KEG +RGNLMGKRVDFSARTVIT DP I++DQ+GVP SIA NLT+
Sbjct: 82  KSGRPLKSIRARLKGKEGXLRGNLMGKRVDFSARTVITGDPNISVDQVGVPKSIAQNLTF 141

Query: 377 PETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK-SSDHHLELGYKV 435
           PE VTP+NI+ L+ LVE GP   PG   AKY+IRD G+R+DL++    S    L+LG+KV
Sbjct: 142 PELVTPFNIDLLQGLVENGPSVHPG---AKYVIRDTGERIDLKHTSGMSGGVRLQLGWKV 198

Query: 436 ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 495
           ERHLNDGD ++FNRQPSLHKMS+MGHR+++MPYSTFRLNLSVT+PYNADFDGDEMNMHVP
Sbjct: 199 ERHLNDGDIIIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSVTTPYNADFDGDEMNMHVP 258

Query: 496 QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 555
           QS ET+AE+ E+ MVPK +VSPQSN+PVMGIVQDTL   RK TKRD F+ KD+ MNILMW
Sbjct: 259 QSVETKAEISEICMVPKQVVSPQSNKPVMGIVQDTLCAVRKFTKRDCFLTKDLVMNILMW 318

Query: 556 WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL--FRTAAWHADNDKGILTAGDTLV 613
             D+DG++P P ILKP PLWTGKQ+ ++IIPK IN    R +  H +N+   ++ GDT V
Sbjct: 319 VLDWDGRLPIPCILKPIPLWTGKQILSMIIPKGINSDNLRHSG-HPENEHSDISPGDTKV 377

Query: 614 RIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
            IE GELL G +CKKT+G +   L+HVI  E+G + A+ FL   Q +VN WLLQN FSIG
Sbjct: 378 LIEDGELLCGIVCKKTVGATHQGLVHVIMNELGAEKAKDFLNGCQAVVNQWLLQNGFSIG 437

Query: 674 IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
           IGDTIAD +TM+ I +TIS AK  V  +I +AQ   LE  PG T+ E+FE++VN+ LNTA
Sbjct: 438 IGDTIADDETMKNITNTISNAKQRVAEIIAEAQQDKLECAPGMTIRETFEHRVNKELNTA 497

Query: 734 RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
           RD AG SA++SL E NN+K MV AGSKGSFINISQMTACVGQQNVEGKRIPFGF  RTLP
Sbjct: 498 RDAAGKSAEQSLKEENNVKQMVIAGSKGSFINISQMTACVGQQNVEGKRIPFGFKFRTLP 557

Query: 794 HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
           HFTKDD+ PESRGFVEN YLRGLTPQEFFFHAMGGREGLIDTAVKT+ETGYIQRRLVKA+
Sbjct: 558 HFTKDDHSPESRGFVENCYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKAL 617

Query: 854 EDIMVKYDGTVRNSLGDVIQF 874
           ED+MVKYDGTVRNSLGD++QF
Sbjct: 618 EDVMVKYDGTVRNSLGDIVQF 638


>gi|321468524|gb|EFX79508.1| hypothetical protein DAPPUDRAFT_319346 [Daphnia pulex]
          Length = 878

 Score =  882 bits (2278), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/890 (51%), Positives = 603/890 (67%), Gaps = 48/890 (5%)

Query: 12  VAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
           + KV+ VQFGILSP EI +MSV +  I++ +  E GKPK GGL DPR G ++R  +CETC
Sbjct: 12  IRKVKRVQFGILSPHEILRMSVTEGGIKYPDIYEGGKPKLGGLMDPRQGAVNRSARCETC 71

Query: 70  TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR- 128
              + ECPGHFGH++L KP+FHIGF+   + I+  VC+ CSK+L   ++ + ++ L    
Sbjct: 72  HRTINECPGHFGHIKLVKPVFHIGFLMKTIKILGCVCYYCSKLLVSPNNPEIREILDKSE 131

Query: 129 -NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIA 187
            +P+ R+  + D CK    CE     ++ G  G          CG  QP++  +G+ MI 
Sbjct: 132 GHPRKRMAHVYDICKRINICENDIGEEITGHIG----------CGRYQPRIRRQGLGMIG 181

Query: 188 EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQ 247
           E+K      D+  Q     E    LTA+RVL   KRISDEDC +LG++PKYARPDWMIL 
Sbjct: 182 EWKHV----DEDSQ-----ETTIVLTADRVLENFKRISDEDCAILGMDPKYARPDWMILT 232

Query: 248 VLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
            LP+PPP VRP+          DD+T +L  I++ N  L    R+G    II +   LLQ
Sbjct: 233 CLPVPPPSVRPAVVTRDFSIRQDDITDKLVDIVKANNELELAIRSGENDEIIDQKINLLQ 292

Query: 298 FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
            HI T   N     P +  +SG+ IKSI +RL+ +EGRIRGNLMGKRVDFSART+ITPDP
Sbjct: 293 SHIGTMMMNHSKRFPFSHHKSGQIIKSIKTRLEGREGRIRGNLMGKRVDFSARTIITPDP 352

Query: 358 TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
            + IDQ+GVP  IA N+T+PE VTP NIE+++ELV+ G         AKY+IR++  R+D
Sbjct: 353 NLRIDQVGVPRIIAQNMTFPEIVTPVNIEKMQELVQRGE--------AKYLIRENADRID 404

Query: 418 LRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 477
           L+Y+KK+    LE+G KVER++ DGD V+ NRQPSL K  +MGHR+K++P+ + RLN S 
Sbjct: 405 LKYVKKNPV--LEIGDKVERNIRDGDLVVVNRQPSLRKEDMMGHRVKVLPWPSIRLNPSC 462

Query: 478 TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
            SPYNA+FDGDEMNMH PQS ETR+EV  +++ P+ I++PQ+N+PVMGIVQDTL+G  K+
Sbjct: 463 ASPYNANFDGDEMNMHFPQSLETRSEVENILLTPRQIITPQANKPVMGIVQDTLVGTSKL 522

Query: 538 TKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAW 597
           TKRD F++K+  MN+LM+   +DGK+P+P ILKPRPLWTGKQ+F LIIP  +N+ RT + 
Sbjct: 523 TKRDVFLQKEQMMNLLMFLPTWDGKMPKPAILKPRPLWTGKQLFTLIIPGNVNMMRTHST 582

Query: 598 HADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
           H D+ D+G    ++ GDT V IE GEL+ G LCKKTLG S  SL+H+I+ E+G +   +F
Sbjct: 583 HPDDEDEGPYKWISPGDTKVVIENGELVMGILCKKTLGASAASLLHIIFMELGHEVCGRF 642

Query: 654 LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
            G+ Q ++N WLL    SIGIGD +AD +T   I  TI  AK +V  +++++Q+  LEP 
Sbjct: 643 YGNIQTVINNWLLYEGHSIGIGDMLADHQTYLNIQATIQNAKEDVIEVLQRSQNDELEPT 702

Query: 714 PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
           PG T+ ++FEN+V +++  A+++A   A+ SL+E NNLKAM  AGS GS I  SQ  ACV
Sbjct: 703 PGNTLRQTFENQVLRIIYDAQEQASDLAKNSLTEYNNLKAMAVAGSSGSSITTSQAIACV 762

Query: 774 GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
           GQQNVEG+RIPFGF  RTLPHF KDD GPESRGFVENSY+ GLTP EF+FHAM GRE LI
Sbjct: 763 GQQNVEGQRIPFGFRKRTLPHFIKDDNGPESRGFVENSYVSGLTPSEFYFHAMAGRELLI 822

Query: 834 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
                 SETG I R+LVK ME +MV YDGTVRNS G ++   Y  +   S
Sbjct: 823 YETRIKSETGII-RQLVKGMESVMVHYDGTVRNSAGRLLLLRYKHNNKKS 871


>gi|157741610|gb|ABV69510.1| RNA polymerase II largest subunit, partial [Verrucaria sp. AFTOL
            2268]
          Length = 974

 Score =  879 bits (2270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/997 (47%), Positives = 638/997 (63%), Gaps = 49/997 (4%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GF+  V  I+ +VC NC ++ A  D  + + AL +R+ K R + I    + +  C+    
Sbjct: 2    GFLGKVKKILETVCHNCGEVKA-VDSEELRYALSVRDRKKRFELIWRLSQKQNVCQA--- 57

Query: 153  IDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPV 206
             D P  D E P+ K K      GGCG  QP +   G+++ A+YK  RK +D++E +PE  
Sbjct: 58   -DAPDDD-ENPIPKEKAGKIRHGGCGNAQPAIRKTGLELWAQYKP-RKGDDEEEAVPE-- 112

Query: 207  ERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV---------- 256
              K  +   + L V + +SDE  ++LGL+  +ARP+WMILQ LP+PPPPV          
Sbjct: 113  --KSQIWPAQALQVFQHLSDETLEMLGLSLDFARPEWMILQSLPVPPPPVRPSISVDGSG 170

Query: 257  ---RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN++    +
Sbjct: 171  QGQRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDNDIANLDK 230

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  
Sbjct: 231  AQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 290

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPET T +N ERLK+ V  GP   PG   A+YIIR+ G+R+DLR+ K +S+  L+ G+
Sbjct: 291  LTYPETATRFNQERLKQFVTNGPEQHPG---ARYIIREQGERIDLRFHKNTSEIVLKTGW 347

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERH+ DG                                    +PYN DFDGDEMN+H
Sbjct: 348  KVERHIMDG-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPYNXDFDGDEMNLH 400

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS E+RAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ +D  MNI+
Sbjct: 401  VPQSEESRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSRDEVMNIM 460

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKGILTAGDTL 612
            +W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +    +    AGD+ 
Sbjct: 461  LWVPDWDGVIPQPAIFKPRPRWTGKQMISMVLPPALNLVRIDGKPSQPPVERFAPAGDSG 520

Query: 613  VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSI 672
            + +  G+L+ G   KK++GT +  +IH I+ E G + A  F    Q +VNYWLL N+FSI
Sbjct: 521  LFVADGQLMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVVNYWLLHNSFSI 580

Query: 673  GIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNT 732
            GIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+FE+KV+  LN 
Sbjct: 581  GIGDTVPDVGTVEKIKLEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALNG 640

Query: 733  ARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTL 792
            ARDEAG++ + SL + NN   M  AGSKGS INISQMTA VGQQ+VEGKRIPFGF  RTL
Sbjct: 641  ARDEAGTATENSLKDINNAIQMARAGSKGSTINISQMTAIVGQQSVEGKRIPFGFKYRTL 700

Query: 793  PHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKA 852
            PHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA
Sbjct: 701  PHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 760

Query: 853  MEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEE 912
            +E++ VKYD TVR+S G+++QF+YGEDG+D   IESQ +D + M  + F+K FR ++ E 
Sbjct: 761  LEEVTVKYDSTVRDSRGNIVQFIYGEDGLDGAHIESQRVDIIAMSDNAFEKQFRVDLMEP 820

Query: 913  NWNPNYMLQEYIDDLKTIK---ELRDVFDAEVQKLEADRYQLAT--EIATSGDSSWPLPV 967
                  + Q+ ++    I    +++ +FD E ++L   R  L +  + AT+ D   PLP+
Sbjct: 821  K---KVVWQDRLEQASEIHGDVDVQKMFDEEYEQLVEGRRFLRSIKKAATTSDEMMPLPM 877

Query: 968  NLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFF 1027
            N+ R++  A+ TFK+    PSD+HP  V+  V +L +RL +V GED +S+EAQ+NATL  
Sbjct: 878  NIVRILNQARTTFKIQSGTPSDLHPSYVIPKVKQLLDRLTIVRGEDRISLEAQENATLLI 937

Query: 1028 NILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
               LRS  A KR++ E+ L R AF+ V+G +E+RF++
Sbjct: 938  KAQLRSRLAFKRLVMEYSLNRLAFDHVVGAVETRFIK 974


>gi|312273887|gb|ADQ57313.1| RNA polymerase II largest subunit, partial [Nosema disstriae]
          Length = 974

 Score =  876 bits (2264), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/1044 (45%), Positives = 646/1044 (61%), Gaps = 130/1044 (12%)

Query: 101  IMRSVCFNCSKILADEDDHKFKQALKI--RNPKNRLKKILDACKNKTKCEGGDEIDVPGQ 158
            I+ S+CF CS+             LKI  +N K  L  I    K K  CEG         
Sbjct: 6    ILESICFYCSR-------------LKISRKNLKPDLNAIWAVSKGKMVCEG--------- 43

Query: 159  DGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVL 218
               E  ++   GCG +QP +  EG+ ++A  K +           +  E K  L  E+V 
Sbjct: 44   ---ELTEEGFNGCGNKQPVIKKEGLNLVAFMKGE-----------DNSEGKVILNGEKVH 89

Query: 219  GVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAM 268
             + K+ISDED ++LG +  Y+RP+W+IL VL +PPP VRPS          DDLTH+L+ 
Sbjct: 90   SIFKKISDEDIEVLGFDLAYSRPEWLILTVLLVPPPSVRPSIVMEGMLRAEDDLTHKLSD 149

Query: 269  IIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSR 328
            II+ N  L++ E  GAP HII ++ QLLQFH+AT  DN++ GQP+A Q+SGRP+KSI +R
Sbjct: 150  IIKSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLIDNDISGQPQALQKSGRPLKSISAR 209

Query: 329  LKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERL 388
            LK KEGR+RGNLMGKRVDFSAR+VIT D  I+++++GVP  +A   T+PE +TP+NIE+L
Sbjct: 210  LKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVAKIHTFPEKITPFNIEKL 269

Query: 389  KELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFN 448
            ++LV  GP+  PG   A Y+IR DGQR+DL +     D  LE GY VERH+ +GD +LFN
Sbjct: 270  EKLVSNGPNEYPG---ANYVIRTDGQRIDLNF--NRGDIKLEEGYIVERHMQNGDTILFN 324

Query: 449  RQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELM 508
            RQPSLHKMS+MGH++++M   TFRLNLSVTSPYNADFDGDEMN+H+PQ++ + +E+ E+ 
Sbjct: 325  RQPSLHKMSMMGHKVRVMDGKTFRLNLSVTSPYNADFDGDEMNLHMPQNYNSISELEEIC 384

Query: 509  MVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFD-------- 560
            MVPK I+ PQSN+PVMGIVQDTL G R  T RD F +K+  M +L +  DF+        
Sbjct: 385  MVPKQILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNEMMQVL-YSIDFEKYYDIGLD 443

Query: 561  -------------------GKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN 601
                               G + +P I KP+ LWTGKQ+ + I P   N+F   + +   
Sbjct: 444  SVIKKGKKFDMGAKEYSLMGLLSKPAIQKPKQLWTGKQILSFIFP---NVFYKNSSNESR 500

Query: 602  DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV 661
            +       DT V I  GE++SG + KK +G + G L+H+I  + G      F+   Q ++
Sbjct: 501  ENDQENVSDTSVVICGGEIMSGIIDKKAVGATQGGLVHIIANDFGYSRVTLFIDDIQKII 560

Query: 662  NYWLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMME 720
              +L+  + FS+GIGDT+AD+ T++ +   I K+K++V  +I++AQ+  L+  PG TM E
Sbjct: 561  TKFLMNIHVFSMGIGDTVADSDTLKYVKQAIEKSKDSVDEIIRKAQNNMLDRLPGMTMKE 620

Query: 721  SFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEG 780
            SFE++VN VLN ARD +G+S QKSL++ NN+KAMV +GSKGSFINISQ+TACVGQQNVEG
Sbjct: 621  SFESQVNYVLNKARDGSGTSTQKSLNKCNNMKAMVLSGSKGSFINISQVTACVGQQNVEG 680

Query: 781  KRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTS 840
            KRIPFGF  RTLPHF K+DY  +SRGFVENSYL GL+P+EFFFHAMGGREGLIDTA+KT+
Sbjct: 681  KRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDTAIKTA 740

Query: 841  ETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSE 900
            ETGYIQRRLVKAMED  V+ DG+VR + G+V Q+LYG DG D+ ++E Q + +   K++ 
Sbjct: 741  ETGYIQRRLVKAMEDATVRLDGSVRGATGNVYQYLYGGDGFDATFLEMQKVQTTNFKETH 800

Query: 901  FDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ-LATEIATSG 959
            F   F  E         Y +++ +   +  K L    D E+QK+  D Y  L   +  S 
Sbjct: 801  FVDMFSIE-------STYAVKKDVVSDQIYKLL--CSDIELQKILYDEYDWLVRHVFDSY 851

Query: 960  D--------------SSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
            +              ++   P NL+R+I NA     +      D+ P  ++EA   L   
Sbjct: 852  NPEDESQNVVNRLYRNALAFPCNLQRIIHNA---INMSHSPVGDVSPYFILEATKDL--- 905

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
                 G + L            N+L+R+  + K +L  ++L    F W++  I+ + + S
Sbjct: 906  ----GGTNEL-----------LNVLIRTHLSVKNILTVYKLDLNGFNWILEAIKDKIMSS 950

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMT 1089
             VA  EM+G +AAQS+GEPATQMT
Sbjct: 951  RVAHNEMVGTLAAQSVGEPATQMT 974


>gi|312273883|gb|ADQ57311.1| RNA polymerase II largest subunit, partial [Nosema sp. CO 05-11]
          Length = 974

 Score =  876 bits (2263), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 471/1042 (45%), Positives = 646/1042 (61%), Gaps = 126/1042 (12%)

Query: 101  IMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDG 160
            I+  +CF CS++               +N KN L  I    K K  CEG           
Sbjct: 6    ILECICFYCSRLKVSR-----------KNLKNDLNAIWAVSKGKMVCEG----------- 43

Query: 161  EEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGV 220
             E  ++   GCG +QP +  EG+ ++A  K +           +  E K  L  E+V  +
Sbjct: 44   -ESTEEGFTGCGNKQPVIKKEGLNLVAFMKGE-----------DNTEGKVILNGEKVHSI 91

Query: 221  LKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMII 270
             K+I DED ++LG +  Y+RP+W+IL +L +PPP VRPS          DDLTH+L+ II
Sbjct: 92   FKKILDEDIEVLGFDLAYSRPEWLILTILLVPPPSVRPSIVMEGMLRAEDDLTHKLSDII 151

Query: 271  RHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLK 330
            + N  L++ E  GAP HII ++ QLLQFH+AT  DN++ GQP+A Q+SGRP+KSI +RLK
Sbjct: 152  KSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLIDNDISGQPQALQKSGRPLKSISARLK 211

Query: 331  AKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKE 390
             KEGR+RGNLMGKRVDFSAR+VIT D  I+++++GVP  +A   T+PE +TP+NIE+L++
Sbjct: 212  GKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVAKIHTFPEKITPFNIEKLEK 271

Query: 391  LVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQ 450
            LV  GP+  PG   A Y+IR DGQR+DL +     D  LE GY VERH+ +GD +LFNRQ
Sbjct: 272  LVANGPNEYPG---ANYVIRTDGQRIDLNF--NRGDIKLEEGYIVERHMQNGDTILFNRQ 326

Query: 451  PSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 510
            PSLHKMS+MGH++++M   TFRLNLSVTSPYNADFDGDEMN+H+PQ++ + +E+ E+ MV
Sbjct: 327  PSLHKMSMMGHKVRVMAGKTFRLNLSVTSPYNADFDGDEMNLHMPQNYNSISELEEICMV 386

Query: 511  PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFD---------- 560
            PK I+ PQSN+PVMGIVQDTL G R  T RD F +K+  M +L +  DF+          
Sbjct: 387  PKQILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNEMMQVL-YSIDFEKYYDIGLDSV 445

Query: 561  -----------------GKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
                             G + +P I KP+ LWTGKQ+ + I P   N+F   + +   + 
Sbjct: 446  IKKCKKLDMGAKEYSLMGLLSKPAIQKPKQLWTGKQILSFIFP---NVFYKNSSNESREN 502

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
             +    DT V I  GE++SG + KK +G + G L+H+I  + G      F+   Q ++  
Sbjct: 503  DLENVSDTSVVICGGEIMSGIIDKKAVGATQGGLVHIIANDFGYSRVTLFIDDIQKIITK 562

Query: 664  WLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            +L+  + FS+GIGDT+AD+ T++ +   I K+K++V  +I++AQ+  L+  PG TM ESF
Sbjct: 563  FLMNIHVFSMGIGDTVADSDTLKYVKQAIEKSKDSVDEIIRKAQNNRLDRLPGMTMKESF 622

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E++VN VLN ARD +G+S QKSL++ NN+KAMV +GSKGSFINISQ+TACVGQQNVEGKR
Sbjct: 623  ESQVNYVLNKARDVSGTSTQKSLNKCNNMKAMVLSGSKGSFINISQVTACVGQQNVEGKR 682

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF K+DY  +SRGFVENSYL GL+P+EFFFHAMGGREGLIDTA+KT+ET
Sbjct: 683  IPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDTAIKTAET 742

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKAMED  V+ DG+VR + G+V Q+LYGEDG D+ ++E Q + +   K++ F 
Sbjct: 743  GYIQRRLVKAMEDATVRLDGSVRGATGNVYQYLYGEDGFDATFLEMQRVQTTNFKEAHF- 801

Query: 903  KAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ-LATEIATS--- 958
                  +D  + +  Y L++     +  K L    D E+QK+  D Y  L   +  S   
Sbjct: 802  ------IDMFSTDSTYALKKGAVSDQIYKLL--CSDIELQKILYDEYDWLVKHVFDSYNP 853

Query: 959  GDSSWPL-----------PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLK 1007
             D S  +           P NL+R+I NA   F+  P    D+ P  ++E    L     
Sbjct: 854  EDESQNVVNRLYRNVIASPCNLQRIIHNAISMFQ-SP--VGDVSPYFILETTKDL----- 905

Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
               G + L            N+L+R+  + K +L  ++L    F WVI  I+ + + S V
Sbjct: 906  --GGTNEL-----------LNVLIRTHLSVKNILTVYKLDLNGFNWVIEAIKDKIMSSKV 952

Query: 1068 APGEMIGCVAAQSIGEPATQMT 1089
            A   M+G +AAQS+GEPATQMT
Sbjct: 953  AHNGMVGTLAAQSVGEPATQMT 974


>gi|226876213|gb|ACO89427.1| RNA polymerase II largest subunit, partial [Chaetothyriales sp.
            TRN210]
          Length = 957

 Score =  874 bits (2258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/979 (48%), Positives = 624/979 (63%), Gaps = 45/979 (4%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GFM  V  I+  VC NC KI A  D    + AL IR+ K R   +    K +  CE    
Sbjct: 1    GFMTKVKKILEMVCHNCGKIKA-LDSEDLRHALSIRDRKRRFDAVWRLSKPRNVCEAD-- 57

Query: 153  IDVPGQDGEEPLKK----NKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVER 208
               P +D + P K       GGCG  QP +   G+++ A +KA +K  DD++  PE    
Sbjct: 58   ---PPEDADGPAKGAPTVRHGGCGNAQPDIRRTGLQLWASWKA-KKGEDDEDTTPE---- 109

Query: 209  KQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS--------- 259
            K+ +     L   + ++DE  + +GL+  YARP+WMILQ LP+PPPPVRPS         
Sbjct: 110  KKRIFPNDALNTFRLLTDETLEAMGLSLDYARPEWMILQALPVPPPPVRPSISVDGSGQG 169

Query: 260  ----DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRAT 315
                DDLT +L  IIR N+ + R E +G P HI  +   LLQ+HIATY DN++ G  +A 
Sbjct: 170  QHSEDDLTFKLGDIIRANQAVLRCEVDGTPDHIKVDLQDLLQYHIATYMDNDIAGLDKAQ 229

Query: 316  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 375
             +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LT
Sbjct: 230  HKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIARTLT 289

Query: 376  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 435
            YPE VTP+NI++LK LV  GP   PG   A+Y+IRD G+R+DLR+ K++ + +L+ G++V
Sbjct: 290  YPEVVTPFNIDKLKRLVANGPTEHPG---ARYVIRDTGERIDLRHHKRAGEMNLQYGWRV 346

Query: 436  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 495
            ERH+ DG                   R+++MPY TFRLNLSVT+PYNADFDGDEMN+HVP
Sbjct: 347  ERHIQDG----XXXXXXXXXXXXXXXRVRVMPYPTFRLNLSVTTPYNADFDGDEMNLHVP 402

Query: 496  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 555
            QS E+RAE+  L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ +D  MN+++W
Sbjct: 403  QSEESRAELANLCMVPLNIVSPQRNSPLMGIVQDTLCGIYKICRRDVFLSRDQVMNLMLW 462

Query: 556  WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRI 615
              ++DG +PQP +LKP P WTGKQ+ ++ +P  +NL R  A   D    +  + DT V +
Sbjct: 463  VPEWDGVIPQPAVLKPTPRWTGKQIISMALPPALNLERLDAKGEDP---LTPSVDTGVMV 519

Query: 616  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 675
             +GEL+ G   KK +GTS G +IH I+ E G + A +F    Q +VNYWLL N FS+GIG
Sbjct: 520  LEGELMFGLFSKKLVGTSAGGVIHTIYNEFGWEKALQFFNGAQTIVNYWLLHNGFSVGIG 579

Query: 676  DTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARD 735
            DT+ D  T+  I + +   K  V ++ ++A    LE  PG T+ ++FE+KV   LN ARD
Sbjct: 580  DTVPDPDTVNKIQEAVDSKKEEVADITEKAYSDQLEAAPGMTVRQTFESKVMNALNQARD 639

Query: 736  EAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 795
             +G++ ++SL + NN   M  +GSKGS INI+QMTA VGQQ VEGKRIPFGF  R+LPHF
Sbjct: 640  LSGAATEQSLKDINNAIQMARSGSKGSTINIAQMTAIVGQQAVEGKRIPFGFKYRSLPHF 699

Query: 796  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 855
             KDDY   SRGFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E+
Sbjct: 700  AKDDYSAHSRGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEE 759

Query: 856  IMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM---DEE 912
            + VKYD TVR+S G+V+QFLYGEDG+D   IE+Q +D L      F+  F  ++   D  
Sbjct: 760  VTVKYDSTVRDSRGNVVQFLYGEDGLDGGHIENQKVDILTTSDKAFNTRFAVDVMSGDIS 819

Query: 913  NWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRL 972
             W    +      +L+   EL+ +FD E + L+  R  L + +    + S  LP+N+ R+
Sbjct: 820  AWKGRLVQAR---ELQGDAELQQLFDDEFEALQEARTFLRS-MDRGTEDSMQLPLNIARI 875

Query: 973  IWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLR 1032
            I  AQK FK+     +D+ P  V+ +V  L  RL +V G+D +S EAQ NATL     LR
Sbjct: 876  IDQAQKNFKIRRGDRTDLDPRHVLTSVTALMNRLVIVRGDDAISREAQHNATLLLKAQLR 935

Query: 1033 STFASKRVLKEHRLTREAF 1051
            S  A KR++ +H LT  A 
Sbjct: 936  SRLAFKRLVIDHSLTTLAL 954


>gi|343482716|gb|AEM45103.1| RNA polymerase II largest subunit [Archaeorhizomyces finlayi]
          Length = 740

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/755 (58%), Positives = 548/755 (72%), Gaps = 28/755 (3%)

Query: 82  HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
           H+ELA+P+FHIGF   V  I+  VCF+C K+  DE + KF +AL+ R+PK+RL  + +  
Sbjct: 1   HIELARPVFHIGFFDKVKKILECVCFSCGKLKVDESNPKFVEALRYRDPKSRLAAVWNVA 60

Query: 142 KNKTKCEGG--DEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ 199
           K K  CE     E D   +D  + L  + GGCG  QP +  +G+K+   +K   K     
Sbjct: 61  KTKLVCEMSPPMEDDPNVKDAIKDLASH-GGCGNLQPSIKRDGLKLYGSWKKSSK----- 114

Query: 200 EQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV--- 256
             L +    K+ +T   VL V K IS ED   +GLN +YA+P+WMI+ VLP+PPPPV   
Sbjct: 115 -DLEDVSAEKKLITPAEVLTVFKHISSEDLAKMGLNEEYAKPEWMIITVLPVPPPPVRPS 173

Query: 257 -------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELP 309
                  R  DDLTH+LA II+ N N+RR E+ GAPAHI SEF QLLQFH+ATY DN++ 
Sbjct: 174 INNEGKGRGEDDLTHKLADIIKANSNVRRCEQEGAPAHITSEFEQLLQFHVATYMDNDIA 233

Query: 310 GQPRATQR-SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPW 368
           GQP+A Q+ +GRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D +GVP 
Sbjct: 234 GQPQALQKKTGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDAVGVPR 293

Query: 369 SIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH 428
           SIA  LTYPETVTP+NI +L+ELV  GP+  PG   AKY+IRD G+R+DLRY K+  D +
Sbjct: 294 SIAKTLTYPETVTPFNIHKLQELVRNGPNQHPG---AKYVIRDTGERIDLRYHKRGGDIN 350

Query: 429 LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
           L+ G++VERH+ DGD ++FNRQPSLHKMS+MGH++K+MPYSTFRLNLS TSPYNADFDGD
Sbjct: 351 LQFGWRVERHIVDGDVIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSCTSPYNADFDGD 410

Query: 489 EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
           EMN+HVPQS ETRAEV E+ MVPK IVSPQSN+PVMGIVQDTL   RK TKRD F+ ++ 
Sbjct: 411 EMNLHVPQSEETRAEVTEICMVPKQIVSPQSNKPVMGIVQDTLAAVRKFTKRDNFMSREA 470

Query: 549 FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTA 608
            MNILMW  ++DG +P P I+KP+ +WTGKQ+ +++IPK INL R      D ++  +  
Sbjct: 471 VMNILMWVPEWDGVMPAPAIIKPKEMWTGKQILSMVIPKGINLVRD-----DENQSPIPL 525

Query: 609 GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
            D  + IE GELL G + K+T+G S G L+HVI  E GP+    +    Q ++NYWLL N
Sbjct: 526 DDNGIMIEHGELLYGIVDKRTVGASAGGLVHVIMREKGPEVCCNWFNGMQRVINYWLLHN 585

Query: 669 AFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQ 728
            FSIGIGDTIAD +TM  I  TI  AK  V+ +I  A    L+PEPG ++ ESFE++V Q
Sbjct: 586 GFSIGIGDTIADKETMSYITTTIHNAKTKVQEIILDAHANKLQPEPGMSLRESFEHRVGQ 645

Query: 729 VLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV 788
           VLN ARD+ G SAQ+SL ESNN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIPFGF 
Sbjct: 646 VLNKARDDVGKSAQQSLKESNNVKQMVQSGSKGSFINISQMSACVGQQMVEGKRIPFGFK 705

Query: 789 DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
            RTLPHFTKDDY PESRGFVENSYLRGLTPQEFFF
Sbjct: 706 YRTLPHFTKDDYSPESRGFVENSYLRGLTPQEFFF 740


>gi|38232237|gb|AAR14954.1| RNA polymerase II largest subunit [Armadillidium vulgare]
          Length = 736

 Score =  871 bits (2251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/740 (57%), Positives = 550/740 (74%), Gaps = 10/740 (1%)

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
            TL   RK+TKRD  +EK   MN+LM+   +DG++P P ILKP+PLWTGKQ+F+LIIP  +
Sbjct: 1    TLTAVRKMTKRDVMLEKHEMMNLLMFLPIWDGRMPHPAILKPKPLWTGKQLFSLIIPGNL 60

Query: 590  NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            NL +T + H D+ D G    ++ GDT V +E GEL+ G LCKKTLG+++GSL+H+ W E+
Sbjct: 61   NLIKTHSAHPDDEDDGPYKWISPGDTKVLVEHGELIMGILCKKTLGSASGSLLHIAWMEL 120

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G + A +F G+ Q +VN WLL    SIGIGDTI+D  T  TI +TI KAK+ V  +I +A
Sbjct: 121  GHEIAGRFYGNIQTVVNNWLLLEGHSIGIGDTISDKDTYRTIQETIKKAKDEVMQVIHKA 180

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+ SL+E NNLKAMV AGSKGS IN
Sbjct: 181  HNDELEPTPGNTLRQTFENQVNRILNNARDKTGVSAKTSLTEYNNLKAMVVAGSKGSNIN 240

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            ISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHA
Sbjct: 241  ISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHA 300

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+  VIQ  YGEDG+   +
Sbjct: 301  MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVSQVIQLRYGEDGLAGEY 360

Query: 886  IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
            +E Q + ++K+    F+  +RF++  E +  +   ++ + +L    E  ++ + E QKL+
Sbjct: 361  VEFQKMPTVKLSYRRFEDKYRFDVTNERYLRHLFNEDVVRELLGSPEAINILEVEWQKLQ 420

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER 1005
             DR  L  ++   GD+   LP NL+R+IWN QK F ++ R  +D+ P++VVE V++   +
Sbjct: 421  EDRVAL-RQVFPKGDTKVVLPCNLERMIWNVQKIFHINKRMQTDLSPIKVVEGVNETLRK 479

Query: 1006 LKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQS 1065
              +V GED +SV+A +NATL F+ L+RST  +K+V +E+RLT EAF W++GEIE+RF Q+
Sbjct: 480  CMIVSGEDRISVQANENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNWLMGEIETRFNQA 539

Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSL 1125
            +  PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK K PSL
Sbjct: 540  IANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSL 599

Query: 1126 SVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEM 1185
            +VFL        E+AKNV C LE+TTLR VT  T ++YDPDP  T+IEED EFV  YYEM
Sbjct: 600  TVFLLGAAARDAEKAKNVLCRLEHTTLRKVTSNTAIYYDPDPQNTVIEEDQEFVNVYYEM 659

Query: 1186 PDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL 1245
            PD D++  +ISPWLLRIEL+R+ M DKKL+M  +++KIN  F DDL CIFNDDNA+KL+L
Sbjct: 660  PDFDVS--RISPWLLRIELDRKKMTDKKLTMEQISQKINSGFGDDLNCIFNDDNAEKLVL 717

Query: 1246 RIRIMNDEAPKGELNDESAE 1265
            RIRI+       +L DE+ E
Sbjct: 718  RIRII---VGDDKLADEAEE 734


>gi|157741496|gb|ABV69453.1| RNA polymerase II largest subunit, partial [Endocarpon petrolepideum]
          Length = 964

 Score =  866 bits (2237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/988 (47%), Positives = 624/988 (63%), Gaps = 51/988 (5%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDE 152
            GF+  V  ++ +VC NC KI A  D    + AL +RNPK R + I    + +  C+    
Sbjct: 2    GFLGKVKKLLETVCHNCGKIKA-VDSEDLRYALTVRNPKKRFELIWRLSQKQNICQA--- 57

Query: 153  IDVPGQDGEEPLKKNK------GGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPV 206
             D P +D E+P  K +      GGCG  QP++   G+++ A+YK  RK +DD+E +PE  
Sbjct: 58   -DSP-EDEEDPAAKERSGKVGHGGCGNAQPQIRRSGLELWAQYKP-RKGDDDEETVPE-- 112

Query: 207  ERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV---------- 256
              K  +   + L V + ++DE    LGLN  +ARP+WMILQ LP+PPPPV          
Sbjct: 113  --KSQIWPAQALEVFQHLTDETLDTLGLNLDFARPEWMILQSLPVPPPPVRPSISVDGSG 170

Query: 257  ---RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPR 313
               R  DDLT +L  IIR N+NL R    GAP HI  E   LLQ+H+ATY DN++    +
Sbjct: 171  QGSRGEDDLTFKLGDIIRANQNLIRINAEGAPDHIAKELQALLQYHVATYMDNDIANLDK 230

Query: 314  ATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALN 373
            A  +SGRPIKSI +RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  
Sbjct: 231  AQHKSGRPIKSIRARLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPRSIART 290

Query: 374  LTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGY 433
            LTYPETVT +NI +LK+LV  GP   PG   A+YIIR++ +R+DLRY K +S   L+ G+
Sbjct: 291  LTYPETVTRFNISKLKQLVTNGPEAHPG---ARYIIRENNERIDLRYHKDTSQIALKTGW 347

Query: 434  KVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMH 493
            KVERH+ DGD                                            DEMN+H
Sbjct: 348  KVERHIMDGDVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------DEMNLH 400

Query: 494  VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL 553
            VPQS ETRAE+ +L MVP  IVSPQ N P+MGIVQDTL G  KI +RD F+ ++  MNI+
Sbjct: 401  VPQSEETRAELAQLCMVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLSREQVMNIM 460

Query: 554  MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN-DKGILTAGDTL 612
            +W  D+DG +PQP I KPRP WTGKQ+ ++++P  +NL R     +    +    AGD+ 
Sbjct: 461  LWVPDWDGVIPQPAIFKPRPRWTGKQMISMVLPPALNLVRIDGKASQPPIERFAPAGDSG 520

Query: 613  VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSI 672
            + +  GEL+ G   KK++GT +  +IH I+ E G + A  F    Q ++NYW L N FSI
Sbjct: 521  LFVSDGELMFGLFNKKSVGTGSNGIIHTIFNEFGHETAMAFFNGAQTVINYWFLHNGFSI 580

Query: 673  GIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNT 732
            GIGDT+ D  T+E I   + K K  V+ + + A  + LE  PG  + E+FE+KV+  LN 
Sbjct: 581  GIGDTVPDIGTVEKIKSEVDKKKAEVERITQSAVAEDLEALPGMNVRETFESKVSAALNG 640

Query: 733  ARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTL 792
            ARDEAG++ + SL +SNN   M  AGSKGS INISQMTA VGQQ+VE KRIPFGF  RTL
Sbjct: 641  ARDEAGTATENSLKDSNNAIQMARAGSKGSTINISQMTAIVGQQSVEXKRIPFGFKYRTL 700

Query: 793  PHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKA 852
            PHF KDDY   S+GFVENSYLRGLTP EFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA
Sbjct: 701  PHFAKDDYSAASKGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKA 760

Query: 853  MEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEE 912
            +E++ VKYDGTVR+S G+++QF+YGEDG+D   IESQ +D + M    F+K FR ++ E 
Sbjct: 761  LEEVTVKYDGTVRDSRGNIVQFIYGEDGLDGAHIESQRVDVIAMSDGAFEKLFRVDLME- 819

Query: 913  NWNPNYML-QEYIDDLKTIK---ELRDVFDAEVQKLEADRYQL--ATEIATSGDSSWPLP 966
               P  ++ Q+ ++    I    +++ +FD E ++L  DR  L    + ATS D   PLP
Sbjct: 820  ---PKKLVWQDRLEQASEIHGDVDVQKLFDEEYEQLVEDRKFLRHIKKAATSADEMMPLP 876

Query: 967  VNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            +N++R++  A+ TFK+    PSD+HP   +  V +L +RL +V G+DP+S+EAQ NATL 
Sbjct: 877  MNVQRILNQARTTFKIQSGAPSDLHPTYAIPKVQQLLDRLVIVRGDDPISLEAQNNATLL 936

Query: 1027 FNILLRSTFASKRVLKEHRLTREAFEWV 1054
               LLRS  A KR++ E+ L R AF+ V
Sbjct: 937  IKALLRSRLAFKRLVMEYSLNRLAFDHV 964


>gi|226876251|gb|ACO89446.1| RNA polymerase II largest subunit, partial [Ascosphaera colubrina]
          Length = 963

 Score =  866 bits (2237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/980 (48%), Positives = 633/980 (64%), Gaps = 36/980 (3%)

Query: 94   FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
            F+  +  ++ +VC NC KI AD  D K+ +AL+ R+PK R   I   CK+K  CE    I
Sbjct: 1    FLTKIKKLLETVCINCGKIKADMTDPKYAEALRYRDPKRRFDAIWRLCKDKLLCETTPII 60

Query: 154  DVPGQDGEEP-LKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTL 212
                     P +    GGCG  QP++  EG+ ++  +K +  K+ DQ     PV+R   +
Sbjct: 61   QEDAFGNAPPQIVYGHGGCGNPQPQIRREGLTLVGTWKPE--KSVDQSDSAPPVKR--VI 116

Query: 213  TAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV-------------RPS 259
            T +    V K IS  D +LLGL+ +YARP+WMI+ VLP+PPPPV             R  
Sbjct: 117  TPKEAREVFKNISSGDVRLLGLSNEYARPEWMIITVLPVPPPPVRPSVLVGGSGTNQRGE 176

Query: 260  DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG 319
            DDLT++LA I+R N+N+ R + +G   H + EF  LLQ+H+ATY DN++ GQP+A Q+S 
Sbjct: 177  DDLTYKLAEIVRANQNVARCQVDGV-GHGLQEFEALLQYHVATYMDNDIAGQPKAMQKSN 235

Query: 320  RPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPET 379
            RP+K+I  RLK KEGR+R NLMGKRVDFSARTVIT DP +++D++GVP SIA  LTY E 
Sbjct: 236  RPVKAIRGRLKGKEGRLRQNLMGKRVDFSARTVITGDPNLSLDEVGVPVSIARTLTYTEV 295

Query: 380  VTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS-DHHLELGYKVERH 438
            VTPYNI +L ++V  GP+  PG   AKYIIR  G++L+L   K  +    L+ G+KVERH
Sbjct: 296  VTPYNISKLVQMVNNGPNIHPG---AKYIIRPTGEKLNLVGNKTPNPGRLLQYGFKVERH 352

Query: 439  LNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSF 498
            + DGD                                   +PYNADFDGDEMN+HVPQS 
Sbjct: 353  ILDGDXXXXXXXXXXXXXXXX----XXXXXXXXXXXXXXXTPYNADFDGDEMNLHVPQSE 408

Query: 499  ETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED 558
            E+RAE+ EL +VP  IVSPQ N P+MGIVQDTL G  KI +RDTF+ K+  MNI+MW  D
Sbjct: 409  ESRAELKELALVPLNIVSPQRNGPLMGIVQDTLCGIYKICRRDTFLTKEHVMNIMMWVPD 468

Query: 559  FDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKG 618
            +DG +PQP I+KPRP WTGKQ+ ++++P  +NL R     A   +      D+   I  G
Sbjct: 469  WDGVIPQPAIIKPRPRWTGKQIISMVLPSGLNLLRLDKDGAPLAERFSPINDSGCFIHGG 528

Query: 619  ELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            EL+ G   KKT+G + G +IH I+ E GPD    F   TQ +VNYWLL N FSIGIGDTI
Sbjct: 529  ELMFGQFSKKTVGATGGGVIHTIFNEYGPDVCMSFFNGTQRVVNYWLLHNGFSIGIGDTI 588

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
             DAKT+  I + + + K+ V+++   A   +L+P PG  + E+FE+KV++ LN ARD+AG
Sbjct: 589  PDAKTVAKIEEAVRERKDEVEDITDDATRDALDPLPGMNIRETFESKVSRALNNARDDAG 648

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
            +  +KSL + N+   M  +GSKGS INISQM A VGQQ+VEGKRIPFGF  RTLPHFTKD
Sbjct: 649  NVTEKSLKDCNHGVQMARSGSKGSTINISQMMAIVGQQSVEGKRIPFGFKYRTLPHFTKD 708

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
            DY PESRGFVENSYLRGLTP EFFFHAM GREGLI TAVKT+ETGYIQR+LVKA+E++MV
Sbjct: 709  DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIGTAVKTAETGYIQRKLVKALEEVMV 768

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE-MDEENWNPN 917
            KYDGTVRNSLGDV+QF+YGEDG+D   IE+Q +D +     +F + FR + MD +   P 
Sbjct: 769  KYDGTVRNSLGDVVQFIYGEDGLDGAHIENQRVDVITCSDEKFRQRFRVDFMDPDYTIPP 828

Query: 918  YMLQ---EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIW 974
             +L+   E  DD++  K L    D E ++L+ DR  L T +    +    LP+N++R++ 
Sbjct: 829  DLLEHGKEIADDIEAQKYL----DEEWEQLQKDRNFLRT-VCKEDEEMMQLPINVQRILE 883

Query: 975  NAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRST 1034
             A+ TF++     SD+HP EV+  V +L +RL +V G+D +S EAQ++ATL F   LRS 
Sbjct: 884  TAKTTFRIREGTVSDLHPSEVIPQVRELLDRLVIVRGDDSISREAQESATLLFMCQLRSR 943

Query: 1035 FASKRVLKEHRLTREAFEWV 1054
             A +R++ E+ L + A + V
Sbjct: 944  LAFRRLVVEYSLNKLALQHV 963


>gi|397135946|gb|AFO11468.1| RNA polymerase I, partial [Wickerhamiella domercqiae]
          Length = 853

 Score =  862 bits (2228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/737 (58%), Positives = 536/737 (72%), Gaps = 18/737 (2%)

Query: 318  SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYP 377
            SGRP+KSI +RLK KEGR+RGNLMGKRV+FSARTVIT DP +++DQ+GVP SIA  LTYP
Sbjct: 131  SGRPVKSIRARLKGKEGRLRGNLMGKRVNFSARTVITGDPNLDLDQVGVPKSIARTLTYP 190

Query: 378  ETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVER 437
            E VTPYNI RL + V  GP+  PG   AKYI+RD G+R+DLRY K+  D  L+ G+KVER
Sbjct: 191  EAVTPYNIHRLTQYVRNGPNEHPG---AKYIVRDTGERIDLRYHKRVGDIALQYGWKVER 247

Query: 438  HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
            HL D D VLFNRQPSLHKMS+M HR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQS
Sbjct: 248  HLMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQS 307

Query: 498  FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 557
             ETRAE+ +L  VP  IVSPQSN+PVMGIVQDTL G RK+T RDTFI+     NIL W  
Sbjct: 308  EETRAELSQLCAVPLQIVSPQSNKPVMGIVQDTLAGIRKMTLRDTFIDYAAVQNILFWVP 367

Query: 558  DFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR---TAAWHADNDKGILTAGDTLVR 614
            D+DG VP P ILKP+PLWTGKQ+ ++ IP  I + R       H+  D G+L        
Sbjct: 368  DWDGVVPPPAILKPKPLWTGKQMASMAIPAGIFMQRFDDNNPLHSPKDNGML-------- 419

Query: 615  IEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGI 674
            + KG+++ G + KKT+G++ G LIH I+ E GP    +F    Q +VN+WLL N FSIGI
Sbjct: 420  VYKGQVMYGVVNKKTVGSTAGGLIHTIFREKGPYVCARFFSSIQKIVNFWLLHNGFSIGI 479

Query: 675  GDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR 734
            GDTIAD  TM  + +TI+ AK  V+ +   AQ  +L PEPG T+ ESFE  V  VLN  R
Sbjct: 480  GDTIADRATMRNVTNTIADAKQQVQRITDDAQANTLSPEPGMTLRESFEAAVILVLNNCR 539

Query: 735  DEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPH 794
            D AG  A+ SL ++NN+K MV+AGSKGSFINISQM+ACVGQQ VEG+RI FGFVDRTLPH
Sbjct: 540  DTAGREAEMSLQDTNNVKQMVSAGSKGSFINISQMSACVGQQIVEGRRIAFGFVDRTLPH 599

Query: 795  FTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAME 854
            F +DDY PES+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E
Sbjct: 600  FMRDDYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALE 659

Query: 855  DIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENW 914
            DIMV+YDG+ RNSLGDVIQF YGEDG+D   +E QTLD++    + F++  RF ++    
Sbjct: 660  DIMVQYDGSARNSLGDVIQFTYGEDGLDGAQVERQTLDTIPGSDAAFER--RFHVNVLEG 717

Query: 915  NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIW 974
                 ++   + +  I E++ + D E  +L+ADR  L   +   GD + PLPVN++R++ 
Sbjct: 718  ESPLRIESAAEIIGNI-EVQKMLDLEYAQLKADRELLRDFVFRDGDHNKPLPVNIRRVVQ 776

Query: 975  NAQKTFKVDPRRPSDMHPMEVVEAVDKL-QERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
            NAQ+ F VD  R SD+   EV++ V KL ++ + V+ GE     EAQ+NA L F  L+RS
Sbjct: 777  NAQQIFNVDQSRVSDLTVPEVIDGVRKLVEDDIVVIRGEGDALYEAQENAALLFRCLVRS 836

Query: 1034 TFASKRVLKEHRLTREA 1050
              A KRV+ E+RL+R A
Sbjct: 837  RLAVKRVINEYRLSRVA 853



 Score = 49.7 bits (117), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 4/52 (7%)

Query: 195 KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMIL 246
           KN D  + PE    ++ LT   +L V K IS EDC  LG N  YARP+WM++
Sbjct: 2   KNFDDGEQPE----RRLLTPSEILSVFKHISPEDCHKLGFNEDYARPEWMLI 49


>gi|327242107|gb|AEA40832.1| RNA polymerase II largest subunit [Hypotrichomonas acosta]
          Length = 1042

 Score =  862 bits (2227), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/1053 (44%), Positives = 655/1053 (62%), Gaps = 58/1053 (5%)

Query: 81   GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDA 140
            GH+   +P++HIG++  V  I++ VC  C ++LA     + + A+   + +NR  K+ + 
Sbjct: 2    GHIRFVRPLYHIGYIDIVYKILQCVCSKCGRLLASYSQPELQSAVTHYHGRNRFLKVYEI 61

Query: 141  CKN-KTKCEGGDEIDVPGQDGEEPLKKNKGG--CGAQQPKLTIEGMKMIAEYKAQR---- 193
                K  CE         +  +E +K+ K     GA  P             +  R    
Sbjct: 62   IHGRKAGCE--------HKKTKEMIKQQKAAQDQGAPAPAENAALADAAKNAEFWRRVSN 113

Query: 194  ----------------KKNDDQEQLPEPVERKQT------LTAERVLGVLKRISDEDCQL 231
                            K+N+ ++     + RK        +TAE    +L++I+D+D ++
Sbjct: 114  TLDESQWVRKSQPCGSKQNELEKNAQGRISRKDVRGESGIITAEVAYEILRQITDQDIRI 173

Query: 232  LGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQER 281
            LG +P    P WMIL+VLP+PP  VRP+          DD+T +L+ II  N +L     
Sbjct: 174  LGFDPIRCHPKWMILKVLPVPPLHVRPAVAMDGVHKSQDDVTKKLSTIIMCNNSLENNIN 233

Query: 282  NGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLM 341
            NG+   +I+E    LQ H+ TY  N+ P   RAT ++GRP K+I  RLK K G IRG+L 
Sbjct: 234  NGSANTVITEDLDTLQLHVTTYMVNDKPSIQRATMKNGRPFKAISQRLKGKSGHIRGHLS 293

Query: 342  GKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPG 401
            GKRV+FS+R+VI+PDP+I+IDQ+GVP  IA  LT+PE VT  N+  ++ LV  G      
Sbjct: 294  GKRVNFSSRSVISPDPSISIDQVGVPQEIARILTFPEVVTARNLTEMQRLVYNGNE---A 350

Query: 402  KTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
            + GA Y+I   G R++L   ++S+   L+    VERHL D D V+FNRQPSLHKMS+MGH
Sbjct: 351  QEGANYVITPQGTRINLAVTQESTAMQLDHDSIVERHLRDDDIVIFNRQPSLHKMSMMGH 410

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
            R +IMP  TFRLNL VT+PYNADFDGDEMNMHVPQS   RAE   +M+VP  I+SPQS  
Sbjct: 411  RARIMPGQTFRLNLCVTTPYNADFDGDEMNMHVPQSQMARAEAKHIMLVPNQIISPQSAC 470

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV-PQPTILKPRPLWTGKQV 580
            P++G+VQD+LLGCR ++ RDTF+ ++   N++MW  D +  V P P ILKP+ LW+GKQV
Sbjct: 471  PIIGLVQDSLLGCRLLSLRDTFLTRNEITNLMMWIIDSNDIVLPPPCILKPKELWSGKQV 530

Query: 581  FNLIIPKQINL--FRTAAWHADNDKGILTA---GDTLVRIEKGELLSGTLCKKTLGTSTG 635
            F+L +PK IN   F   A   +N K + T     D  V I  G LL+G L KKT+  S G
Sbjct: 531  FSLFLPK-INYDGFSVGADAKENTKEVNTWESPADLRVIIRNGNLLAGILDKKTVAKSAG 589

Query: 636  SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAK 695
            SL HV+      + AR+FL  TQ +VN WL    FSIG+ D +A  KT++ ++D I + K
Sbjct: 590  SLNHVVINSYSIETARQFLNQTQLIVNNWLENRGFSIGLSDCLAYEKTLDDVSDQIHQLK 649

Query: 696  NNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMV 755
             NV ++I QA+   LE  PG T ME FE+K+N++LN   ++ G++ QK+    N+L  MV
Sbjct: 650  RNVLDIIDQAKHGKLETPPGLTFMEGFESKINKLLNDLINDTGATVQKASRFWNSLMQMV 709

Query: 756  TAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRG 815
             AGSKGS INISQ+ A VGQQNVEGKRI +GF  RTLPH+ KDDY  E RGF E+S+++G
Sbjct: 710  AAGSKGSLINISQIIAVVGQQNVEGKRIRYGFKGRTLPHYVKDDYDLECRGFCEHSFIQG 769

Query: 816  LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 875
            LTPQEFFFHAMGGR G+IDTA KTS+TGYIQRRL K+ME   V YDGTVRNSL +++QF+
Sbjct: 770  LTPQEFFFHAMGGRVGIIDTACKTSDTGYIQRRLCKSMESHCVMYDGTVRNSLNEIVQFI 829

Query: 876  YGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRD 935
            YG DG++   +E+Q    +++    FD+ F  E+++  +    + ++ I++L++    ++
Sbjct: 830  YGGDGLEPTKLETQKCPLIELSDRVFDERFVMEINDPTFGVGKIQRDIIENLRSDVRSQE 889

Query: 936  VFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPR-RPSDMHPME 994
               AE ++L   R  + TEI  +GDS   L + ++RLI  ++    ++     S++HP  
Sbjct: 890  RLQAETKRLRDFRDLMRTEIFPNGDSVITLSMKVQRLIDTSKTVHDINEHTNISNLHPYF 949

Query: 995  VVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWV 1054
            V++ VDKL +RL VVPG+DP+  EAQ NATL   I L +  ASK ++ + RL+ +AF+W+
Sbjct: 950  VIDEVDKLAKRLVVVPGDDPIGREAQDNATLLMRIQLYTMLASKPLILKERLSMDAFKWI 1009

Query: 1055 IGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQ 1087
            IGEIE RF +++VAPGEM+G VA QSIGEP+TQ
Sbjct: 1010 IGEIEERFPETIVAPGEMVGTVAGQSIGEPSTQ 1042


>gi|31127052|gb|AAC03140.2| RNA polymerase II largest subunit [Pedetontus saltator]
          Length = 722

 Score =  861 bits (2224), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/726 (57%), Positives = 539/726 (74%), Gaps = 8/726 (1%)

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVITPDP + IDQ+GVP SIA NLT+PE VTP+NI+++++LV  G    PG   AKY
Sbjct: 1    SARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQDLVRRGNSQYPG---AKY 57

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            IIRD+G+R+DLR+  K SD HL+ GYKVERH+ +GD ++FNRQP+LHKMS+MGHR+K++P
Sbjct: 58   IIRDNGERIDLRFHPKPSDLHLQCGYKVERHIREGDLIIFNRQPTLHKMSMMGHRVKVLP 117

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            +STFR+NLSVTSPYNADFDGDEMN+HVPQS ETRAEV  + +  + I++PQ+N+PVMGIV
Sbjct: 118  WSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHITXRQIITPQANKPVMGIV 177

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QDTL   RK+TKRD F+EK+  MNILM    +DGK+PQP ILKP+P+WTGKQVF+LIIP 
Sbjct: 178  QDTLTAVRKMTKRDVFLEKEQMMNILMHLPIWDGKMPQPAILKPKPMWTGKQVFSLIIPG 237

Query: 588  QINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
             +N+ RT + H D+ D G    ++ GDT V +E GEL+ G LCKKTLG S GSL+H+   
Sbjct: 238  NVNMIRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGASAGSLLHICML 297

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
            E+G + A +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK +V  +I+
Sbjct: 298  ELGHEVAGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKEDVIEVIQ 357

Query: 704  QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
            +A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV AGSKGS 
Sbjct: 358  KAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSN 417

Query: 764  INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
            INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF K   GPESRGFVENSYL GLTP EFFF
Sbjct: 418  INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKXXXGPESRGFVENSYLAGLTPSEFFF 477

Query: 824  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
            HAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGT+RNS+G +IQ  YGEDG+  
Sbjct: 478  HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTIRNSVGQLIQLRYGEDGLAG 537

Query: 884  VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
              +E QT  ++K+    F+K F+F+   E +      ++ + +L    E+    + E ++
Sbjct: 538  ETVEFQTQPTIKLSNKVFEKKFKFDPTNERYLRRIFNEDIMKELMGSGEVISELEREWEQ 597

Query: 944  LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
            L+ DR  L  +I  +GD+   LP NL+R+IWN QK F ++ R  +D+ P++V+  V  L 
Sbjct: 598  LQKDRDCLR-QIFPNGDNKTVLPCNLQRMIWNVQKIFHINKRATTDLSPLKVIRGVQHLL 656

Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
             +  +V GED LS  A +NATL F  L+RST  ++RV +E RL+ EAFEW+ GEIE+RF 
Sbjct: 657  SKCIIVAGEDHLSKLANENATLLFRCLVRSTLCTRRVAEEFRLSSEAFEWLTGEIETRFQ 716

Query: 1064 QSLVAP 1069
            Q+ V P
Sbjct: 717  QAQVQP 722


>gi|83320438|gb|ABC02846.1| RNA polymerase II largest subunit, partial [Conidiobolus coronatus]
          Length = 749

 Score =  858 bits (2216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/756 (55%), Positives = 547/756 (72%), Gaps = 22/756 (2%)

Query: 82  HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
           H+ L+KP++H GF+     I+  VC+ CS++  DE   K +  ++ +N K R K + D  
Sbjct: 1   HISLSKPVYHPGFISKAKKILECVCYICSRLKVDESHPKMRN-IRGKNAKIRFKIVWDVS 59

Query: 142 KNKTKCE-GGDEIDVPGQDGEEPLKKNKG----GCGAQQPKLTIEGMKMIAEYKAQRKKN 196
           K KT CE   +E   P  D  +P    +G    GCG + P +  EGMK+ A +KA ++ +
Sbjct: 60  KTKTICEVDSNENSGPNLDPTDPSSILEGPTREGCGHRHPTIRKEGMKLFAVFKASKQAD 119

Query: 197 DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
           D      EP E +  L   + L + KRI + D   +GL+ ++ARP+WMI+  L +PPP V
Sbjct: 120 D--SGFGEP-EGRIPLPPSKALEIFKRIDEADVDKMGLSWEFARPEWMIITALAVPPPAV 176

Query: 257 RPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
           RPS          DDLT++L+ II+ N++L     +G+P HI+ E  Q LQ+H+ATY DN
Sbjct: 177 RPSIMMDGTNRGQDDLTYKLSDIIKTNKSLEVALSDGSPGHILEEHEQYLQYHVATYMDN 236

Query: 307 ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
           ++ G P++ Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP ++IDQ+GV
Sbjct: 237 DIAGLPQSLQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGV 296

Query: 367 PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
           P SIA NLTYPE VTPYNI+RL+E V  GP+  PG   AKY+IRD G+R+DLR+ +++++
Sbjct: 297 PRSIARNLTYPERVTPYNIQRLREAVRNGPNVHPG---AKYVIRDTGERIDLRHYRRNAE 353

Query: 427 HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 486
             L +GY VERH+ D D V+FNRQPSLHKMS+MGH IK+MPYSTFRLNLSVTSPYNADFD
Sbjct: 354 VPLMVGYIVERHIIDNDVVIFNRQPSLHKMSMMGHLIKVMPYSTFRLNLSVTSPYNADFD 413

Query: 487 GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
           GDEMNMHVPQS E+RAEVL + MVP+ IVSPQSN+PVMGIVQDTL G RK T+RD F+++
Sbjct: 414 GDEMNMHVPQSEESRAEVLNICMVPRQIVSPQSNKPVMGIVQDTLCGIRKFTQRDAFLDR 473

Query: 547 DVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGIL 606
            + MN+LMW  +++G +P P ++ P+PLWTGKQ+ +LIIPKQ N+  T + H D +   +
Sbjct: 474 ALVMNLLMWVPNWNGVLPTPAVIAPKPLWTGKQIVSLIIPKQTNMMTTHSTHPDGENTFI 533

Query: 607 TAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLL 666
           + GDT V I  G+L++G +CKKT+GT +G LIH I+ E G +  +KF+   Q +VNYWLL
Sbjct: 534 SPGDTKVIIHDGDLVAGIVCKKTVGTPSGGLIHTIFNEHGFEECKKFINGCQAIVNYWLL 593

Query: 667 QNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKV 726
           QN FSIGIGDTIADA TM  I  TI+ AK  V   I+   +  LE  PG T+ ++FE++V
Sbjct: 594 QNGFSIGIGDTIADADTMNHITKTITDAKEKVAQFIETVNEDKLEIAPGMTLRKTFESQV 653

Query: 727 NQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFG 786
           NQVLN ARD  G+ AQ +LS SNN+K MV AGSKGSFINISQM+ACVGQQNVEG+RIPFG
Sbjct: 654 NQVLNKARDSVGNYAQVNLSSSNNVKQMVIAGSKGSFINISQMSACVGQQNVEGQRIPFG 713

Query: 787 FVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
           F +R+LPHFTKDDY PES+GFVENSYLRGLTP EFF
Sbjct: 714 FNNRSLPHFTKDDYSPESKGFVENSYLRGLTPYEFF 749


>gi|343482718|gb|AEM45104.1| RNA polymerase II largest subunit [Archaeorhizomyces sp. FG15P2b]
          Length = 727

 Score =  857 bits (2214), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/742 (58%), Positives = 543/742 (73%), Gaps = 27/742 (3%)

Query: 82  HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
           H+ELA+P+FHIGF   V  I+  VCF+C K+  D+ + KF  AL+ R+PK+RL  + +  
Sbjct: 1   HIELARPVFHIGFFDKVKKILECVCFSCGKLKVDQSNPKFVDALRYRDPKSRLTAVWNVA 60

Query: 142 KNKTKCEGGD-EIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
           K K  CE      D P +D  + L  + GGCG  QP +  +G+K+   Y + +K N D E
Sbjct: 61  KTKLVCEMTPPRDDDPSKDAIKDLASH-GGCGNLQPSIRRDGLKL---YGSWKKTNKDVE 116

Query: 201 QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV---- 256
            +      K+ +T   VL V K IS ED   +GLN +YA+P+WMI+ VLP+PPPPV    
Sbjct: 117 DVSA---EKKLITPAEVLTVFKHISSEDLAKMGLNEEYAKPEWMIITVLPVPPPPVRPSI 173

Query: 257 ------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPG 310
                 R  DDLTH+LA II+ N N+RR E+ GAPAHIISEF QLLQFH+ATY DN++ G
Sbjct: 174 NNEGKGRGEDDLTHKLADIIKANSNVRRCEQEGAPAHIISEFEQLLQFHVATYMDNDIAG 233

Query: 311 QPRATQR-SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWS 369
           QP+A Q+ +GRPIKSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP S
Sbjct: 234 QPQALQKKTGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDEVGVPRS 293

Query: 370 IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHL 429
           IA  LTYPETVTP+NI +L+ELV  GP+  PG   AKY+IRD G+R+DLRY K+  D +L
Sbjct: 294 IAKTLTYPETVTPFNIHKLQELVRNGPNEHPG---AKYVIRDTGERIDLRYHKRGGDINL 350

Query: 430 ELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDE 489
           + G++VERH+ DGDFV+FNRQPSLHKMS+MGH++K+MPYSTFRLNLS TSPYNADFDGDE
Sbjct: 351 QYGWRVERHVVDGDFVIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSCTSPYNADFDGDE 410

Query: 490 MNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVF 549
           MN+HVPQS ETRAE+ E+ MVPK IVSPQSN+PVMGIVQDTL   RK TKRD F+ +D  
Sbjct: 411 MNLHVPQSEETRAEISEICMVPKQIVSPQSNKPVMGIVQDTLAAVRKFTKRDNFMSRDAV 470

Query: 550 MNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAG 609
           MNILMW  ++DG VP P I+KP+P+WTGKQ+ +++IP+ INL R      D ++  +   
Sbjct: 471 MNILMWVPEWDGVVPAPAIIKPKPMWTGKQILSMVIPQGINLVRD-----DENQSPIPLD 525

Query: 610 DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
           D  + IE GELL G + K+T+G S G L+HVI  E GP+    +    Q ++NYWLLQN 
Sbjct: 526 DNGIMIEHGELLYGIVDKRTVGASAGGLVHVIMREKGPEVCCNWFNGMQRVINYWLLQNG 585

Query: 670 FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
           FSIGIGDTIAD  TM  I  TI  AK  V+ +I  A   +L+PEPG ++ ESFE+KV QV
Sbjct: 586 FSIGIGDTIADKGTMAFITTTIQDAKTRVQEIIVDANSNNLQPEPGMSLRESFEHKVGQV 645

Query: 730 LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
           LN ARD+ G SAQ+SL +SNN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIPFGF  
Sbjct: 646 LNKARDDVGKSAQQSLKDSNNVKQMVQSGSKGSFINISQMSACVGQQMVEGKRIPFGFKY 705

Query: 790 RTLPHFTKDDYGPESRGFVENS 811
           RTLPHFTKDDY PESRGFVENS
Sbjct: 706 RTLPHFTKDDYSPESRGFVENS 727


>gi|83320412|gb|ABC02833.1| RNA polymerase II largest subunit, partial [Allomyces arbuscula]
          Length = 739

 Score =  855 bits (2210), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/756 (55%), Positives = 546/756 (72%), Gaps = 31/756 (4%)

Query: 82  HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
           H+ELA+P++H+ F+  V  ++  VCF+CSK+L D ++  F++A +I++   R K++   C
Sbjct: 1   HVELARPVYHVSFLPRVKKVLECVCFHCSKLLVDPNNPLFQKARRIKDRNRRFKEVHKLC 60

Query: 142 KNKTKCEGGDEIDVPGQDGEEP-LKKN---KGGCGAQQPKLTIEGMKMIAEYKAQRKKND 197
           K +T+C+  DE     ++GE+P L        GCG +QP +  + + +  ++K   + N 
Sbjct: 61  KTRTECKAADE----PKEGEDPDLPAGYIPASGCGEKQPAIRKKNLTLYVQFK---QANS 113

Query: 198 DQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP------- 250
           + E      E KQ L+  +VL +LK+ISDEDC+ +GL+P +ARP+WMIL VLP       
Sbjct: 114 NSE------EGKQELSPSQVLQILKKISDEDCESMGLDPVFARPEWMILTVLPVPPPPVR 167

Query: 251 ---IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNE 307
              +     R  DDLT +L  II+ N  L++ E +G P H I +   LLQFH+AT+ DNE
Sbjct: 168 PSILVDGTSRGEDDLTFKLCDIIKANAFLQKAEADGVPGHRIKDHEDLLQFHVATFVDNE 227

Query: 308 LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 367
           + G PRA QRSGRPIK+I SRLK KEGR+RGNLMGKRVDFSARTVIT DP ++IDQ+GVP
Sbjct: 228 ISGTPRAMQRSGRPIKAIRSRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSIDQVGVP 287

Query: 368 WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH 427
            SIA NLTYPE VTPYNI +L+ELV  GP   PG   AKY+IRD+G R+DLR++    + 
Sbjct: 288 RSIARNLTYPEIVTPYNINKLQELVHNGPTQHPG---AKYVIRDNGDRVDLRFIGAKGNL 344

Query: 428 HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDG 487
            L+ G+ VERHL+DGD ++FNRQPSLHKMS+MGH++K+MPYSTFRLNLSVTSPYNADFDG
Sbjct: 345 GLQYGWIVERHLDDGDVIIFNRQPSLHKMSMMGHKVKVMPYSTFRLNLSVTSPYNADFDG 404

Query: 488 DEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
           DEMNMHVPQ  E +AE+ +L MVP  I+SPQSN+PVMGIVQDTL G  K T+RDTF++K+
Sbjct: 405 DEMNMHVPQPLEAKAEIQQLCMVPLQIISPQSNKPVMGIVQDTLCGITKFTRRDTFMDKN 464

Query: 548 VFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILT 607
           + MN+LMW  ++D  VP P I+KP+PLWTGKQ+ +L+IPK +N     + H D++   ++
Sbjct: 465 MVMNLLMWVPNWDRNVPPPAIMKPKPLWTGKQILSLVIPK-VNCITHHSTHPDDESTDIS 523

Query: 608 AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 667
            GDT V +E GELL+G +CKKT+G + G L+HV W E GP+AA+  L   Q +VNYWLL 
Sbjct: 524 PGDTRVIVEDGELLAGIVCKKTVGAAAGGLVHVSWMEHGPEAAKALLNGCQTIVNYWLLH 583

Query: 668 NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVN 727
           N FSIGIGDTIAD  TM  IN  I+ A++ VK  I  AQ   L+   G T+ E+FE +VN
Sbjct: 584 NGFSIGIGDTIADDATMAQINKIIASARDTVKQTIHTAQRGQLKAMTGMTLRETFEAQVN 643

Query: 728 QVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 787
           + LN A ++AGS+A KS   SNN+K MV +GSKGS INISQM+ACVGQQNVEGKRIPFGF
Sbjct: 644 RALNEAVNKAGSAAAKSFKVSNNVKQMVVSGSKGSNINISQMSACVGQQNVEGKRIPFGF 703

Query: 788 VDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
             R+LPHF KDDY PESRGFVENSYLRGL+PQEFFF
Sbjct: 704 QYRSLPHFVKDDYSPESRGFVENSYLRGLSPQEFFF 739


>gi|83320468|gb|ABC02861.1| RNA polymerase II largest subunit, partial [Orphella haysii]
          Length = 750

 Score =  851 bits (2198), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/760 (56%), Positives = 539/760 (70%), Gaps = 41/760 (5%)

Query: 82  HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
           H+ELA+P++HIGF+  V  I+  VC+ CSK+ ADE D  F  A  I++P  R+K++ D C
Sbjct: 1   HIELARPVYHIGFIIKVKKILECVCWYCSKLKADETDPAFILAKSIQDPNKRMKRVWDIC 60

Query: 142 KNKTKCEG------GDEI-----DVPGQ--------DG--EEPLKKNKGGCGAQQPKLTI 180
           K +T CE       G+++     ++P +        DG   +  +K  GGCG +QP    
Sbjct: 61  KARTICESTGDDGSGEQLASSINELPNESERMRNAVDGMLGDKRRKGHGGCGHRQPIFRK 120

Query: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
           EG+K+ A +KA       +E + E    KQ L+  +VL VLKRI+D+D   +G+NP Y+R
Sbjct: 121 EGLKLNATFKA----GSGEEGVAEG---KQQLSVIQVLQVLKRITDDDSFAMGINPDYSR 173

Query: 241 PDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIIS 290
           P+WMIL V+P+PP  VRPS          DDLT++L  I++ N  +R  E  GAP HII 
Sbjct: 174 PEWMILSVMPVPPMSVRPSIQMDATRQSEDDLTYKLNDILKANARVRSCEMEGAPLHIIE 233

Query: 291 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 350
           EF  LLQFH+AT+ +NEL G P+A Q+SGRPIKSI +RLK KEGR+RGNLMGKRVDFSAR
Sbjct: 234 EFEALLQFHVATFMNNELSGLPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSAR 293

Query: 351 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 410
           TVIT DP I+IDQ+GVP SIA NLT PE VTPYNI  L+ +V  GP   PG   AKY+IR
Sbjct: 294 TVITGDPNISIDQVGVPRSIARNLTVPEAVTPYNIATLQMMVRNGPTEHPG---AKYVIR 350

Query: 411 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
           D G+R+DLRY K+  D  L++GY+VERHL D D V+FNRQPSLHKMS+MGHR+++MP+ST
Sbjct: 351 DTGERIDLRYNKRGGDIPLQIGYRVERHLVDNDVVIFNRQPSLHKMSMMGHRVRVMPFST 410

Query: 471 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
           FRLNLSVTSPYNADFDGDEMNMHVPQS ETRAE+ E+ MVP+ IVSPQSN+PVMGIVQDT
Sbjct: 411 FRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIKEICMVPRQIVSPQSNKPVMGIVQDT 470

Query: 531 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQIN 590
           L   RK TKRD F+E D+ MN+LM   ++DG VP P I+KP+ LWTGKQ+++L+IPK  N
Sbjct: 471 LAAIRKFTKRDCFLEADLVMNLLMTLPEWDGIVPPPCIMKPKMLWTGKQIYSLVIPKGTN 530

Query: 591 LFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
            +R  + H D +    + GDT V IE G++L+G +CK+T+G+S G LIH+I  E G + A
Sbjct: 531 CYRFHSTHPDEENTWCSPGDTRVIIENGQVLAGIICKRTVGSSEGGLIHIIMNEFGFEVA 590

Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
             F   TQ ++NYW     FSIGIGDTIAD  TM+T+   I++    V  LI+ AQ+  L
Sbjct: 591 TAFFNGTQRVINYWFQNYGFSIGIGDTIADDSTMQTVGTIINECYERVDELIRTAQEDKL 650

Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
           E  PG T+ ESFE+KVN  LN ARD++G   Q+ L E NN++ MV AGSKGSFIN+SQMT
Sbjct: 651 ECLPGMTLKESFEHKVNFELNRARDQSGKIVQRRLKEDNNVRQMVDAGSKGSFINVSQMT 710

Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVEN 810
           ACVGQQNVEGKRIPFGF  RTLPHF KDDY P+S+GFVEN
Sbjct: 711 ACVGQQNVEGKRIPFGFRYRTLPHFCKDDYSPQSKGFVEN 750


>gi|146423605|ref|XP_001487729.1| hypothetical protein PGUG_01105 [Meyerozyma guilliermondii ATCC 6260]
 gi|146388850|gb|EDK37008.1| hypothetical protein PGUG_01105 [Meyerozyma guilliermondii ATCC 6260]
          Length = 1018

 Score =  844 bits (2180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/826 (53%), Positives = 573/826 (69%), Gaps = 58/826 (7%)

Query: 744  SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPE 803
            +L + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIPFGF DR+LPHFTKDDY PE
Sbjct: 2    NLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPE 61

Query: 804  SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGT 863
            S+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT
Sbjct: 62   SKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGT 121

Query: 864  VRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEM-DEENWNPNYMLQE 922
             RNSLGD+IQF+YGEDG+D   +ESQ++D +      F++ +R ++ D E    + +L E
Sbjct: 122  TRNSLGDIIQFVYGEDGVDGTQVESQSVDVIPGTDESFERRYRVDLLDPEKCIRDSLL-E 180

Query: 923  YIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKV 982
               +++    L+ V D E ++L  DR  L     T+GD +WPLPVNL+R+I NAQ+ F  
Sbjct: 181  SGKEVRGDVNLQRVLDEEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQNAQQLFHG 240

Query: 983  DPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLK 1042
               + SD+   E+VE V +L ++L V+ G+ PL  E+Q+NATL F  L+RS  A++RV++
Sbjct: 241  GRHKASDLRLEEIVEGVKELCKKLLVLRGDSPLVKESQENATLLFQCLVRSRLATRRVIE 300

Query: 1043 EHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKN 1102
            E RL R +FEW +GEIE++F +SLV PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KN
Sbjct: 301  EFRLNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKN 360

Query: 1103 VTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVW 1162
            VTLGVPRL+EI+NVAK IKTP+L+V+L+  + +  E+AK VQ A+E+TTL++VT +TE++
Sbjct: 361  VTLGVPRLKEILNVAKNIKTPALTVYLEKDIAADIEKAKVVQSAIEHTTLKNVTASTEIF 420

Query: 1163 YDPDPMGTIIEEDVEFVKSYYEMPDEDI--APEKISPWLLRIELNREMMVDKKLSMAAVA 1220
            YDPDP  T++EED + V++Y+ +PDE +  + EK SPWLLR+EL+R  M+DK+L+MA VA
Sbjct: 421  YDPDPRSTVLEEDYDTVEAYFAIPDEKVEESIEKQSPWLLRLELDRAKMLDKQLTMAQVA 480

Query: 1221 EKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTE 1280
            EKI+Q F +DL  I++DD ADKLI+R R++ D  PK    D  AE+D  LK+IE++ML  
Sbjct: 481  EKISQNFGEDLFVIWSDDTADKLIIRCRVVRD--PKSLDEDVDAEEDQILKRIEAHMLES 538

Query: 1281 MALR-----------------------------------GVNLLAVMCHEDVDARRTTSN 1305
            ++LR                                   GVNL  VM    VDA+RT SN
Sbjct: 539  ISLRGIQGITRVFMMQHKLSLPDETGEFKQGQEWVLETDGVNLADVMAVPGVDAKRTYSN 598

Query: 1306 HLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGIN 1365
            + IEI+ VLGIEA R AL  E+  VI+FDGSYVNYRH+A+L D MT RGHLMAITRHGIN
Sbjct: 599  NFIEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMALLVDVMTARGHLMAITRHGIN 658

Query: 1366 RNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEML 1425
            R DTG +MRCSFEETV+ILL+A   AE D   G++EN++LGQLAP+GTG   + ++D++L
Sbjct: 659  RADTGALMRCSFEETVEILLEAGAAAELDDCHGISENVVLGQLAPLGTGAFDVMVDDKIL 718

Query: 1426 KNAIELQLPSYME---GLEFGMTPARSPVSGTPYHDGMMSPGYL-FSPNLRLSPVTDAQF 1481
            +++     PS M    G   G          TPY +  M    + F      SP+  A  
Sbjct: 719  QSS-----PSNMSVPVGAAEGAGAYADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPV 773

Query: 1482 SPYVGGMAFSPTSSPGYSPSSPGYSPSSP-GYSPTSPGYSPTSPGY 1526
            S   G +     ++ G  P SP  SP+SP  Y  TSP Y   SPGY
Sbjct: 774  SDGAGAL-----TAYGGQPGSP--SPTSPFAYGATSPAYGGASPGY 812


>gi|327242139|gb|AEA40848.1| RNA polymerase II largest subunit [Trichomonas gallinae]
          Length = 1019

 Score =  843 bits (2178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/1036 (43%), Positives = 626/1036 (60%), Gaps = 47/1036 (4%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            +++LA+P FH+GF+K V  I++ VC  C ++     D + +        K R   I +  
Sbjct: 1    YIKLAEPFFHVGFLKHVYKILQMVCHKCGRLNCSYGDPEIQYIATHYKGKQRFDAIFNYI 60

Query: 142  KNKTK-C---------EGGDEI------DVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKM 185
             + T+ C         E  D +      ++   D     ++ K  C ++ P    +G   
Sbjct: 61   ASSTRDCSDSPAAKDKESPDVVADERFWEIVNGDAISEHRRMKVPCKSK-PVAIEQGQDF 119

Query: 186  IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
            + +YK   K  +D             L+AE VL + + ISD+D +L+G N K + P WMI
Sbjct: 120  LIKYKDTSKTEEDY------------LSAEYVLRIFENISDQDVRLMGFNVKRSHPKWMI 167

Query: 246  LQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            L+VLP+PP  VRP            DD+TH+L  II+ N NL     + +    +++  +
Sbjct: 168  LKVLPVPPLAVRPQVVSPGQSVPSQDDITHKLVDIIKINNNLIALRNDSSTDTAMNDTRK 227

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQ+HI TYF N+ P   RAT ++GRP+K I  RLK KEG +RG+L GKR DFSAR+VI+
Sbjct: 228  LLQYHITTYFINDKPSILRATTKNGRPLKVISQRLKGKEGHLRGHLSGKRDDFSARSVIS 287

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP+I+IDQ+GVP  +A  LT+PE VT  N + L+ +V  G H   G  GA Y+  D G 
Sbjct: 288  PDPSISIDQVGVPEDLAKILTFPEIVTTTNQKWLESIVMKG-HDDIG--GANYVTNDHGT 344

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            + DL +    S   L  GY V+RH+ D D V+FNRQPSLHKMS+MGHR  +MP  TFRLN
Sbjct: 345  KTDLAFCNDLSTIALSPGYIVDRHIRDNDIVIFNRQPSLHKMSMMGHRALLMPARTFRLN 404

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            L  T+PYNADFDGDEMN+HVPQS   RAEV  +M VPK I+SPQ+NRPV+G+VQD LLGC
Sbjct: 405  LCDTTPYNADFDGDEMNLHVPQSQAARAEVRHIMAVPKQIISPQANRPVIGLVQDALLGC 464

Query: 535  RKITKRDTFIEKDVFMNILMWW-EDFDGKVPQPTILKPRPLWTGKQVFNLIIPK-QINLF 592
            R ++KRDTF+ ++  MN++MW   + D  +P P ILKP  LW+GKQVF+L +PK   + F
Sbjct: 465  RLLSKRDTFLTRNQVMNLMMWLPTNKDTILPPPCILKPVQLWSGKQVFSLFLPKINYDHF 524

Query: 593  RTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARK 652
               A   D+ K  + A DT V I  G LL+G L K +   S GSL HV+      D A+ 
Sbjct: 525  SNGA-RDDDKKSWMPANDTRVIIRDGHLLAGLLDKTSCARSEGSLTHVVINSYNTDIAKD 583

Query: 653  FLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEP 712
            FL  TQ +VN WL    FSIG+ D +     ++ + + I++ ++NVK +I+ AQ   LE 
Sbjct: 584  FLNQTQLIVNNWLEHRGFSIGLIDCVVPQSVLDQVEEKINEVEDNVKGVIRTAQSGKLER 643

Query: 713  EPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 772
             PG T ++SFE +VN  LN    +A    QK +   N+   M+TAGSKG+  N++Q+   
Sbjct: 644  RPGMTYIQSFEAEVNSALNQVLGDAYKLIQKDIRRDNSFIEMLTAGSKGANFNVTQVIGV 703

Query: 773  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 832
            V QQN+EGKR+ FGF  RTLPH+ K +YG   RGF  +SY+ GLTP EF FHAMGGR G+
Sbjct: 704  VAQQNIEGKRVKFGFNGRTLPHYQKHEYGLIPRGFCRHSYIEGLTPPEFLFHAMGGRTGI 763

Query: 833  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLD 892
            IDTA KTS+TGYIQRRLVK+ME   V YDGTVRNSL +V+QF+YG DG+D+  +E+Q L 
Sbjct: 764  IDTACKTSDTGYIQRRLVKSMESHHVAYDGTVRNSLNEVVQFVYGGDGLDATGLETQRLT 823

Query: 893  SLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLA 952
             +      FDK +    ++  +  + M    +D+        +    E  +L   R  L 
Sbjct: 824  LVDCDDKTFDKTYHLSPEDPLFGTDCMDSNVLDEFLNTPGKENRLMHEENRLREFREILQ 883

Query: 953  TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP-SDMHPMEVVEAVDKLQERLKVVPG 1011
            T+I  +G +   LPVN+ RLI  +Q+   ++PR   SD++P++V+  V++    L +V G
Sbjct: 884  TDIFPTGSTKVVLPVNIHRLIETSQRQCGINPRASISDLNPLDVISRVEECANALTIVKG 943

Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
             D +S  AQ+NATL   I+L S  ++K+V+ EHRL   AF W++G I  RF +S+VAPGE
Sbjct: 944  NDSISRTAQENATLLLKIMLFSNLSAKQVIFEHRLNESAFSWILGAIHDRFYRSIVAPGE 1003

Query: 1072 MIGCVAAQSIGEPATQ 1087
            M+G +A QSIGEP TQ
Sbjct: 1004 MVGTIAGQSIGEPTTQ 1019


>gi|327242119|gb|AEA40838.1| RNA polymerase II largest subunit [Trichomonas gallinae]
          Length = 1019

 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/1036 (43%), Positives = 628/1036 (60%), Gaps = 47/1036 (4%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            +++LA+P FH+GF+K V  I++ VC  C ++     D + +        K R   I +  
Sbjct: 1    YIKLAEPFFHVGFLKHVYKILQMVCHKCGRLNCSYGDPEIQYIATHFKGKQRFDAIFNYI 60

Query: 142  KNKTK-C---------EGGDEI------DVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKM 185
             + T+ C         E  D +      ++   D     ++ K  C ++ P    +G   
Sbjct: 61   ASSTRDCSDSPAAKDKESPDVVADERFWEIVNGDAISEHRRMKVPCKSK-PVAIEQGQDF 119

Query: 186  IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
            + +YK   K  +D             L+AE VL + + ISD+D +L+G N K + P WMI
Sbjct: 120  LIKYKDTSKTEEDY------------LSAEYVLRIFENISDQDVRLMGFNVKRSHPKWMI 167

Query: 246  LQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            L+VLP+PP  VRP            DD+TH+L  II+ N NL     + +    +++  +
Sbjct: 168  LKVLPVPPLAVRPQVVSPGQSVPSQDDITHKLVDIIKINNNLIALRNDSSTDTAMNDTRK 227

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQ+HI TYF N+ P   RAT ++GRP+K I  RLK KEG +RG+L GKR DFSAR+VI+
Sbjct: 228  LLQYHITTYFINDKPSILRATTKNGRPLKVISQRLKGKEGHLRGHLSGKRDDFSARSVIS 287

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP+I+IDQ+GVP  +A  LT+PE VT  N + L+ +V  G H   G  GA Y+  D G 
Sbjct: 288  PDPSISIDQVGVPEDLAKILTFPEIVTTTNQKWLESIVMKG-HDDIG--GANYVTNDHGT 344

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            + DL +    S   L  GY V+RH+ D D V+FNRQPSLHKMS+MGHR  +MP  TFRLN
Sbjct: 345  KTDLAFCNDLSTIALSPGYIVDRHIRDNDIVIFNRQPSLHKMSMMGHRALLMPARTFRLN 404

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            L  T+PYNADFDGDEMN+HVPQS   RAEV  +M VPK I+SPQ+NRPV+G+VQD LLGC
Sbjct: 405  LCDTTPYNADFDGDEMNLHVPQSQAARAEVRHIMAVPKQIISPQANRPVIGLVQDALLGC 464

Query: 535  RKITKRDTFIEKDVFMNILMWW-EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFR 593
            R ++KRDTF+ ++  MN++MW   + D  +P P ILKP  LW+GKQVF+L +PK IN   
Sbjct: 465  RLLSKRDTFLTRNQVMNLMMWLPTNKDTILPPPCILKPVQLWSGKQVFSLFLPK-INYDH 523

Query: 594  TAAWHADNDK-GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARK 652
             +   +D+DK   + A DT V I  G LL+G L K +   S GSL HV+      D A+ 
Sbjct: 524  FSNGASDDDKKSWMPANDTRVIIRDGHLLAGLLDKTSCARSEGSLTHVVINSYNTDIAKD 583

Query: 653  FLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEP 712
            FL  TQ +VN WL    FSIG+ D +     ++ + + I++ ++NVK +I+ AQ   LE 
Sbjct: 584  FLNQTQLIVNNWLEHRGFSIGLIDCVVPQSVLDQVEEKINEVEDNVKGVIRTAQSGKLER 643

Query: 713  EPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 772
             PG T ++SFE +VN  LN    +A    QK +   N+   M+TAGSKG+  N++Q+   
Sbjct: 644  RPGMTYIQSFEAEVNSALNQILGDAYKLIQKDIRRDNSFIEMLTAGSKGANFNVTQVIGV 703

Query: 773  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 832
            V QQN+EGKR+ FGF  RTLPH+ K +YG   RGF  +SY+ GLTP EF FHAMGGR G+
Sbjct: 704  VAQQNIEGKRVKFGFNGRTLPHYQKHEYGLIPRGFCRHSYIEGLTPPEFLFHAMGGRTGI 763

Query: 833  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLD 892
            IDTA KTS+TGYIQRRLVK+ME   V YDGTVRNSL +V+QF+YG DG+D+  +E+Q L 
Sbjct: 764  IDTACKTSDTGYIQRRLVKSMESHHVAYDGTVRNSLNEVVQFVYGGDGLDATGLETQRLT 823

Query: 893  SLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLA 952
             +      FDK +    ++  +  + M    +D+        +    E  +L   R  L 
Sbjct: 824  LVDCDDKTFDKTYHLSPEDPLFGTDCMDSNVLDEFLNTPGKENRLMHEENRLREFREILQ 883

Query: 953  TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP-SDMHPMEVVEAVDKLQERLKVVPG 1011
            T+I  +G +   LPVN+ RLI  +Q+   ++PR   SD++P++V+  V++    L +V G
Sbjct: 884  TDIFPTGTTKVVLPVNIHRLIETSQRQCGINPRASISDLNPLDVISRVEECANSLTIVKG 943

Query: 1012 EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGE 1071
             D +S  AQ+NATL   I+L S  ++K+V+ EHRL   AF W++G I  RF +S+VAPGE
Sbjct: 944  NDSISRTAQENATLLLKIMLFSNLSAKQVIFEHRLNESAFSWILGAIHDRFYRSIVAPGE 1003

Query: 1072 MIGCVAAQSIGEPATQ 1087
            M+G +A QSIGEP TQ
Sbjct: 1004 MVGTIAGQSIGEPTTQ 1019


>gi|327242127|gb|AEA40842.1| RNA polymerase II largest subunit [Trichomonas tenax]
          Length = 1016

 Score =  842 bits (2175), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/1035 (43%), Positives = 635/1035 (61%), Gaps = 52/1035 (5%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILD-- 139
            +++LA+P FH+GF+K V  I++ VC  C ++     D + +        K R +K+ D  
Sbjct: 1    YIKLAEPFFHVGFLKHVYKILQMVCHKCGRLNCSYGDPEIQYIATHYKGKQRFEKLFDYV 60

Query: 140  ACKNKTKCEGGDEIDVPGQD------------GEEPLKKNKGGCGAQQPKLTIE-GMKMI 186
            A KNK  C+  +  D    D            G+E  +  +     +   + IE G   +
Sbjct: 61   ADKNKDCCDSPNAKDQTNPDFVSDERFWEIVNGDEISEHRRIKVPCKSKSVAIEQGKDFL 120

Query: 187  AEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMIL 246
             +YK   K  +D             L+AE VL + + ISD+D +L+G N K + P WMIL
Sbjct: 121  IKYKDTSKTEEDY------------LSAEYVLRIFENISDQDVRLMGFNVKRSHPKWMIL 168

Query: 247  QVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
            +VLP+PP  VRP            DD+TH+L+ II++N +L     + +    ++E   L
Sbjct: 169  KVLPVPPLAVRPQVVSPGQSVPSQDDITHKLSDIIKNNNHLAALRNDSSTDTAMNETRAL 228

Query: 296  LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
            LQ+HI TYF N+ P   RAT ++GRP+K I  RLK KEG +RG+L GKR DFSAR+VI+P
Sbjct: 229  LQYHITTYFINDKPSILRATTKNGRPLKVISQRLKGKEGHLRGHLSGKRDDFSARSVISP 288

Query: 356  DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
            DP+I+IDQ+GVP  +A  LT+PE VT  N + L+ +V  G H   G  GA Y+  D G +
Sbjct: 289  DPSISIDQVGVPEDLAKILTFPEIVTTTNQKWLESIVMKG-HDDIG--GANYVTNDHGTK 345

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
             DL +    S   L  GY V+RH+ D D V+FNRQPSLHKMS+MGHR  +MP  TFRLNL
Sbjct: 346  TDLAFCNDLSTIALSPGYVVDRHIRDNDIVIFNRQPSLHKMSMMGHRALLMPARTFRLNL 405

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
              T+PYNADFDGDEMN+HVPQS   RAEV  +M VPK I+SPQ+NRPV+G+VQD LLGCR
Sbjct: 406  CDTTPYNADFDGDEMNLHVPQSQTARAEVRHIMAVPKQIISPQANRPVIGLVQDALLGCR 465

Query: 536  KITKRDTFIEKDVFMNILMWW-EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
             ++KRDTF+ ++  MN++MW   + D  +P P ILKP  LW+GKQVF+L +PK I+    
Sbjct: 466  LLSKRDTFLTRNQVMNLMMWLPTNKDTILPPPCILKPVQLWSGKQVFSLFLPK-ISYDSY 524

Query: 595  AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
            +    D DK  +   D+ V I  G LL+G L K++   S GSL HV+      + A+ FL
Sbjct: 525  SNGATDKDKNWIPKNDSRVIIRDGNLLAGILDKRSCARSEGSLTHVVINSYNTNIAKDFL 584

Query: 655  GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
              TQ +VN WL    FSI + D +     ++ + + I + + NV+  I+ AQ   L+  P
Sbjct: 585  NQTQLIVNNWLEYRGFSISLIDCVVPHFVLDKVEEGIMQVEENVRETIRTAQSGKLDRRP 644

Query: 715  GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
            G T ++SFE +VN  LN     A  +  +++   N+   M+TAGSKG+  NI+Q+   V 
Sbjct: 645  GMTYIQSFEAEVNSQLNKVLSIAYKTITENIRPDNSFVEMLTAGSKGADFNITQVIGVVA 704

Query: 775  QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
            QQN+EGKR+ FGF  RTLPH+ K +YG   RGF ++SY+ GLTP EF FHAMGGR G+ID
Sbjct: 705  QQNIEGKRVKFGFNGRTLPHYQKHEYGLVPRGFCKHSYIEGLTPPEFLFHAMGGRTGIID 764

Query: 835  TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
            TA KTS+TGYIQRRLVK+ME   V YDGTVRNSL +V+QF+YG DG+D+  +E+Q L+ +
Sbjct: 765  TACKTSDTGYIQRRLVKSMESHHVAYDGTVRNSLNEVVQFIYGGDGLDATGLETQFLNLV 824

Query: 895  KMKKSEFDKAFRFEMDEENWNPNYM----LQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
             +   +FD+ +   +D+  +    M    L+E+++     K+L+D    E  +L+  R  
Sbjct: 825  DLDDKKFDQTYHMNVDDPTFGSEAMDANILEEFLNTPGKEKKLQD----EETRLKEFREI 880

Query: 951  LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPR-RPSDMHPMEVVEAVDKLQERLKVV 1009
            L TEI  +G+    LP+N+ R+I ++Q+ F ++P    SD++P++V+  V      L +V
Sbjct: 881  LQTEIFPTGNKKVVLPINISRIIESSQRQFGINPHASTSDLNPLDVIAKVQDCVNSLTIV 940

Query: 1010 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAP 1069
             G D +S+ AQ+NATL   I+L S  ASK+V+  HRL  +AF W++G I  RF +S+VAP
Sbjct: 941  KGNDSISLRAQENATLILKIMLYSNLASKQVIFTHRLNEQAFNWILGSIRDRFYRSIVAP 1000

Query: 1070 GEMIGCVAAQSIGEP 1084
            GEM+G +A QSIGEP
Sbjct: 1001 GEMVGTIAGQSIGEP 1015


>gi|340055761|emb|CCC50082.1| RNA polymerase IIA largest subunit, fragment, partial [Trypanosoma
            vivax Y486]
          Length = 1068

 Score =  840 bits (2171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/1095 (41%), Positives = 656/1095 (59%), Gaps = 72/1095 (6%)

Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
             P S  E+ KV  VQF +    +I+  +V  +EH ++ E G+P  GG++D R+GT D + 
Sbjct: 7    LPPSQMELQKVNEVQFEVFKERQIKAYAVCLVEHAKSYEHGRPVRGGINDLRMGTTDFEF 66

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
             CETC     ECPGHFG++ELA+PMF+IG    VL +++ VC +C  +L +  D    + 
Sbjct: 67   ACETCHRRHPECPGHFGYIELAEPMFNIGVFDLVLQVLKCVCKSCGALLLNTSDTNLLKK 126

Query: 125  LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK-------NKGGCGAQQPK 177
            L+     NRL++++  C    KC    ++D   + GE  +            GCGA QP+
Sbjct: 127  LQHAAGVNRLRQVVKMCG--LKCRMSTDMDATEERGESVVGALGTDGIGAARGCGASQPR 184

Query: 178  LT-IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
            ++ I G+      KA  ++ D                A+ V  +L R+SD D +L+G +P
Sbjct: 185  ISRIYGIYPTLLVKASLEEQD------------SVWHADTVRQILDRVSDNDARLMGFDP 232

Query: 237  KYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAH 287
                P  ++L VLP+PPP VRP+         D+LTHQ+  I++ N  LRR + +   A 
Sbjct: 233  LRCHPRDLVLTVLPVPPPQVRPAISFGSLKSDDELTHQIMSIVKRNNQLRRDKESDVQAA 292

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
            I    A LLQ H+ATYF+N             + +KS+  RLK K GR+RGNLMGKRVDF
Sbjct: 293  IDRTRA-LLQEHVATYFNNASTYYKPTKVNDNKKLKSLTERLKGKYGRLRGNLMGKRVDF 351

Query: 348  SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
            SARTVIT DP I++D++GVP+S+A+ LT+PE V+  N +RL E V    +P      A Y
Sbjct: 352  SARTVITGDPNIDVDEVGVPFSVAMTLTFPERVSAVNRKRLTEFVRRTVYPS-----ANY 406

Query: 408  IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            +   +G    L  L+  +   L +G  VERH+ +GD VLFNRQP+LH+MS+MGHR++++ 
Sbjct: 407  VHHPNGTTTKLALLRDRTKVTLNVGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVLN 466

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            Y+TFRLNLS T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGIV
Sbjct: 467  YNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIV 526

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
            QD+LLG  ++T +DTF++K    ++ +W + +  ++P P ILKP PLWTGKQVF+LI+P 
Sbjct: 527  QDSLLGSYRLTDKDTFLDKYFVQSVALWLDLW--QLPIPAILKPYPLWTGKQVFSLILP- 583

Query: 588  QINLFRTAAWH--ADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
            ++N       H      K      D+ V I +G+LL G + K  +G + GSLIHVI+ E 
Sbjct: 584  EVN-------HPAVQQVKPPFPHNDSSVVIRRGQLLCGPITKGIVGAAPGSLIHVIFNEH 636

Query: 646  GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
            G D   +F+   Q +  Y+LL   FS+G+ DT+ADA T+  +N+ + + + +V+ +   A
Sbjct: 637  GSDEVARFINGVQRVTTYFLLNFGFSVGVQDTVADAGTLRQMNEVLVRTRESVEKIGAAA 696

Query: 706  QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
             +++L  + G T+++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKG+ +N
Sbjct: 697  NNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLN 756

Query: 766  ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
            I Q+   VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EFFFH 
Sbjct: 757  ICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHT 816

Query: 826  MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
            M GREGLIDTAVKTS+TGY+QR+L+KA+ED+   YDGTVRN+  ++IQF+YGEDG+D   
Sbjct: 817  MAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGAR 876

Query: 886  IESQTLDSLKMKKS-EFDKAFRFEMDEENWNPNYMLQEYID---------DLKTIKELRD 935
            IE   L  L  + + E +  +++E +E       +   Y+D         D + +++L+ 
Sbjct: 877  IEGGQLFPLPFRDNKEMEDTYKYEYEESGAFSAKVGGNYMDPHVKKMLRADAENVRKLQS 936

Query: 936  VFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEV 995
             FD  +   E  R  +  ++         LPVNL RLI NA+ T      + S++ P+ +
Sbjct: 937  EFDQLMNDREWTRKMI--DLEERDKLKLNLPVNLGRLIQNARSTMG-KRSQVSNLSPITI 993

Query: 996  VEAVDKLQERL-KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHR 1045
            ++ V +LQE L ++ P          E+ LS +  ++A   FNI LR   ASKRVLKE++
Sbjct: 994  IDHVRRLQEDLMRLFPAYHRKVDGQIENTLSRQRIESALTLFNIHLRQLLASKRVLKEYK 1053

Query: 1046 LTREAFEWVIGEIES 1060
            L  +AFE+++ EI +
Sbjct: 1054 LNDKAFEYLLKEIRT 1068


>gi|152060506|sp|A5DCV3.2|RPB1_PICGU RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
            polymerase II subunit 1; Short=RNA polymerase II subunit
            B1; AltName: Full=DNA-directed RNA polymerase III largest
            subunit
          Length = 1579

 Score =  838 bits (2164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/825 (53%), Positives = 570/825 (69%), Gaps = 56/825 (6%)

Query: 744  SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPE 803
            +L + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIPFGF DR+LPHFTKDDY PE
Sbjct: 568  NLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPE 627

Query: 804  SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGT 863
            S+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT
Sbjct: 628  SKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGT 687

Query: 864  VRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEY 923
             RNSLGD+IQF+YGEDG+D   +ESQ++D +      F++ +R ++ +        L E 
Sbjct: 688  TRNSLGDIIQFVYGEDGVDGTQVESQSVDVIPGTDESFERRYRVDLLDPEKCIRDSLLES 747

Query: 924  IDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVD 983
              +++    L+ V D E ++L  DR  L     T+GD +WPLPVNL+R+I NAQ+ F   
Sbjct: 748  GKEVRGDVNLQRVLDEEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQNAQQLFHGG 807

Query: 984  PRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKE 1043
              + SD+   E+VE V +L ++L V+ G+ PL  E+Q+NATL F  L+RS  A++RV++E
Sbjct: 808  RHKASDLRLEEIVEGVKELCKKLLVLRGDSPLVKESQENATLLFQCLVRSRLATRRVIEE 867

Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
             RL R +FEW +GEIE++F +SLV PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNV
Sbjct: 868  FRLNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNV 927

Query: 1104 TLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWY 1163
            TLGVPRL+EI+NVAK IKTP+L+V+L+  + +  E+AK VQ A+E+TTL++VT +TE++Y
Sbjct: 928  TLGVPRLKEILNVAKNIKTPALTVYLEKDIAADIEKAKVVQSAIEHTTLKNVTASTEIFY 987

Query: 1164 DPDPMGTIIEEDVEFVKSYYEMPDEDI--APEKISPWLLRIELNREMMVDKKLSMAAVAE 1221
            DPDP  T++EED + V++Y+ +PDE +  + EK SPWLLR+EL+R  M+DK+L+MA VAE
Sbjct: 988  DPDPRSTVLEEDYDTVEAYFAIPDEKVEESIEKQSPWLLRLELDRAKMLDKQLTMAQVAE 1047

Query: 1222 KINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEM 1281
            KI+Q F +DL  I++DD ADKLI+R R++ D  PK    D  AE+D  LK+IE++ML  +
Sbjct: 1048 KISQNFGEDLFVIWSDDTADKLIIRCRVVRD--PKSLDEDVDAEEDQILKRIEAHMLESI 1105

Query: 1282 ALR-----------------------------------GVNLLAVMCHEDVDARRTTSNH 1306
            +LR                                   GVNL  VM    VDA+RT SN+
Sbjct: 1106 SLRGIQGITRVFMMQHKLSLPDETGEFKQGQEWVLETDGVNLADVMAVPGVDAKRTYSNN 1165

Query: 1307 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1366
             IEI+ VLGIEA R AL  E+  VI+FDGSYVNYRH+A+L D MT RGHLMAITRHGINR
Sbjct: 1166 FIEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMALLVDVMTARGHLMAITRHGINR 1225

Query: 1367 NDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLK 1426
             DTG +MRCSFEETV+ILL+A   AE D   G++EN++LGQLAP+GTG   + ++D++L+
Sbjct: 1226 ADTGALMRCSFEETVEILLEAGAAAELDDCHGISENVVLGQLAPLGTGAFDVMVDDKILQ 1285

Query: 1427 NAIELQLPSYME---GLEFGMTPARSPVSGTPYHDGMMSPGYL-FSPNLRLSPVTDAQFS 1482
            ++     PS M    G   G          TPY +  M    + F      SP+  A  S
Sbjct: 1286 SS-----PSNMSVPVGAAEGAGAYADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVS 1340

Query: 1483 PYVGGMAFSPTSSPGYSPSSPGYSPSSP-GYSPTSPGYSPTSPGY 1526
               G +     ++ G  P SP  SP+SP  Y  TSP Y   SPGY
Sbjct: 1341 DGAGAL-----TAYGGQPGSP--SPTSPFAYGATSPAYGGASPGY 1378



 Score =  659 bits (1701), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/578 (57%), Positives = 419/578 (72%), Gaps = 27/578 (4%)

Query: 1   MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLG 58
           M  +FP+S A +  V+ VQFG+LSP+E+R +SV +IE+ ET ++   +P+ GGL+DPRLG
Sbjct: 1   MSRQFPHSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQATKRPREGGLNDPRLG 60

Query: 59  TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
           +IDR  KC+TC  +MAECPGHFGH+ELAKP+FHIGF+  +  +   VC +C K+L DE +
Sbjct: 61  SIDRNFKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDESN 120

Query: 119 HKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE--EPLKKNKGGCGAQQP 176
               QA++IR+PK R   + + CK K  CE     DV   DGE  EP + ++GGCG  QP
Sbjct: 121 PAMAQAIRIRDPKKRFNAVWNLCKGKMICEA----DVLQDDGEGNEPKRTSRGGCGHTQP 176

Query: 177 KLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
            +  +G+K+   +K  + KN D+ + PE    ++ LT   +L V K I+ EDC  LG N 
Sbjct: 177 VVRKDGLKLWGTWK--QNKNYDETEQPE----RRLLTPSEILNVFKHINSEDCVRLGFNE 230

Query: 237 KYARPDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
            YARP+WM++ VLP+PPP            R  DDLT +LA +I+ N N++R E +G+P 
Sbjct: 231 DYARPEWMLITVLPVPPPPVRPSIAFNDTARGEDDLTFKLADVIKANINVQRLELDGSPQ 290

Query: 287 HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
           H+ISEF  LLQFH+ATY DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVD
Sbjct: 291 HVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVD 350

Query: 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
           FSARTVI+ DP +++DQ+GVP SIA  LTYPE VTPYNI RL E V  GP+  PG   AK
Sbjct: 351 FSARTVISGDPNLDLDQVGVPISIARTLTYPEIVTPYNIHRLTEYVRNGPNEHPG---AK 407

Query: 407 YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
           Y+IRD G R+DLRY K++ D  L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+M
Sbjct: 408 YVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVM 467

Query: 467 PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
           PYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ E+  VP  IVSPQSN+PVMGI
Sbjct: 468 PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNKPVMGI 527

Query: 527 VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP 564
           VQDTL G RK+T RD FIE D  MN+L W  D+DG +P
Sbjct: 528 VQDTLCGVRKMTLRDIFIEYDQVMNMLYWIPDWDGVIP 565



 Score = 47.8 bits (112), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 26/37 (70%)

Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPD 1762
             YSPTS +YSPTSP YSP+SP YSP SP  +   N D
Sbjct: 1538 QYSPTSPAYSPTSPQYSPNSPQYSPRSPLYSPDQNDD 1574


>gi|321468709|gb|EFX79693.1| hypothetical protein DAPPUDRAFT_244672 [Daphnia pulex]
          Length = 920

 Score =  836 bits (2160), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 462/933 (49%), Positives = 609/933 (65%), Gaps = 76/933 (8%)

Query: 1   MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLG 58
           MDT    S A +  V+ VQ GILSPDEIR+MSV +  I H    E GK K GGL DPR G
Sbjct: 40  MDTLGSDSKATIRLVKKVQLGILSPDEIRRMSVTEGGIIHPYIYEGGKRKLGGLMDPRQG 99

Query: 59  TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
            + RK KC+TC   + ECPGHFGH+ LAKP++H+                      + ++
Sbjct: 100 VVIRKAKCQTCDGTINECPGHFGHINLAKPVYHV----------------------NPNN 137

Query: 119 HKFKQAL--KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQP 176
            KFK+ L      P   +  + D CK    CE G+                 GGCG   P
Sbjct: 138 PKFKEILVKSKDQPLKCMAHVYDLCKGINICEVGN-----------------GGCGRYLP 180

Query: 177 KLT-IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
           K+  ++G K+  E+K      D+  Q     E+K  LTAERV  + KRISDEDC +LG++
Sbjct: 181 KIRRLKGFKINGEWKHV----DEDSQ-----EKKIVLTAERVWEIFKRISDEDCAILGMD 231

Query: 236 PKYARPDWMILQVLPIPPPPV---------RPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
           PKYARPDWMI+  LP+PPP V         +  +DLT +LA I+R N  L    ++G   
Sbjct: 232 PKYARPDWMIVTCLPVPPPAVRPAQIIGMDQIENDLTMKLADIVRANNKLLGAVQSG--- 288

Query: 287 HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            I+S   ++LQ HIA+  D++    P     S  P +SI  RL+ ++GRIRGNLMGKRVD
Sbjct: 289 EILSGKTKMLQLHIASMMDSKSTLLPAYYHESTLPTQSIKDRLEGRDGRIRGNLMGKRVD 348

Query: 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
           F+ARTVITPDP + IDQ+G+P SIA N+T+PE V P+NIE+++ELV+ G    PG   AK
Sbjct: 349 FAARTVITPDPNLRIDQVGIPRSIAQNMTFPERVAPFNIEKMQELVQRGNSQYPG---AK 405

Query: 407 Y-IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
           + II+ +G R+DLR+  KS D  LE G  VERH+ DGD V+ NRQPSL K  +MGHR+K+
Sbjct: 406 FCIIKKNGDRIDLRFPSKSPDLRLECGDIVERHICDGDLVVLNRQPSLRKEGVMGHRVKV 465

Query: 466 MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
           +P STF LN SV + YNA+FDGDEMN+HVPQS ETR+EV  L++  + I++PQ+++PVMG
Sbjct: 466 LPCSTFCLNPSVATAYNANFDGDEMNLHVPQSMETRSEVESLLVSSRLIITPQASKPVMG 525

Query: 526 IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
           IVQDTL+G  K+TKRD F+EK+  MN+LM+   +DGK+P+P ILKPRPLWT   V ++II
Sbjct: 526 IVQDTLVGAYKLTKRDVFLEKEQMMNLLMFLPTWDGKMPKPAILKPRPLWTA--VHSIII 583

Query: 586 PKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
           P  +N+ RT + H D+ D+G    ++ GDT V IE GEL+ G LCKKTLG S  SL+H+I
Sbjct: 584 PGNVNMMRTHSTHPDDEDEGPYKWISPGDTKVVIENGELVMGILCKKTLGASAASLLHII 643

Query: 642 WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
           + E+G +   +F G+ Q ++N WLL    SIGI DT+A+ +T   I DTI  AK +V  +
Sbjct: 644 FMELGHEVCGRFYGNIQTVINNWLLYEGHSIGIEDTLANCQTYMGIQDTIQNAKEDVIEV 703

Query: 702 IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
           I+++ +  LEP PG T+ ++FEN+VN+++  A+ +A + A+ SL+E NNLKAM  AGS G
Sbjct: 704 IERSHNDELEPTPGNTLRQTFENQVNRIIYDAQQQASALAKNSLTEYNNLKAMAVAGSSG 763

Query: 762 SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
           S I  SQ  ACVGQQNVEG+RIPFGF  RTLPHF KDD GPESRGFVENSYL GLTP EF
Sbjct: 764 SSITTSQAIACVGQQNVEGQRIPFGFRKRTLPHFIKDDNGPESRGFVENSYLTGLTPCEF 823

Query: 822 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
           +FHAM GRE LI      SETG I R+LVK ME +MV YDGTVRNS G ++QF YGEDG+
Sbjct: 824 YFHAMAGRELLIYETRIKSETGII-RQLVKGMESVMVHYDGTVRNSAGRLLQFSYGEDGL 882

Query: 882 DSVWIESQTLDSLKMKKSEFDKAFRFEMDEENW 914
            +  +E Q + ++ +    F+K F+ +   EN+
Sbjct: 883 AAESVELQKMPTVNLSNEAFEKKFKCDPSNENY 915


>gi|120561170|gb|ABM26980.1| RNA polymerase II largest subunit [Nosema granulosis]
          Length = 917

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/976 (46%), Positives = 606/976 (62%), Gaps = 106/976 (10%)

Query: 132  NRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKA 191
            N L  +   CK KT+CE                  ++ GCG +QP +  EG+ ++A  K 
Sbjct: 4    NTLNALWGLCKTKTECE------------------DEAGCGNKQPVIKKEGLNLVAFMKG 45

Query: 192  QRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPI 251
            +           +  E K  L  ERV  + K+ISDED   LG + +++RP+W+IL VL +
Sbjct: 46   E-----------DNSEGKVILNGERVHSIFKKISDEDILRLGFDLEFSRPEWLILTVLLV 94

Query: 252  PPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIA 301
            PPP VRPS          DDLTH+LA II+ N  L++ E  GAP HII ++ QLLQFHIA
Sbjct: 95   PPPAVRPSIEMEGMLRAEDDLTHKLADIIKANTYLKKYELEGAPGHIIRDYEQLLQFHIA 154

Query: 302  TYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINI 361
            T  DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSAR+VIT D  I++
Sbjct: 155  TLIDNDISGQPQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISL 214

Query: 362  DQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYL 421
            + +GVP+ +A   T+PE +TP NIERL++LV  GP+  PG   A Y+IR  GQR+DL++ 
Sbjct: 215  EXVGVPYEVAKIHTFPEKITPXNIERLEKLVANGPNEYPG---ANYVIRTXGQRIDLKF- 270

Query: 422  KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPY 481
                D  LE GY VERH+ DGD VLFNRQPSLHKMS+MGHR+K+M   T RLNLSVTSPY
Sbjct: 271  -NRGDIKLEEGYVVERHMQDGDVVLFNRQPSLHKMSMMGHRVKVMXGKTSRLNLSVTSPY 329

Query: 482  NADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRD 541
            NADFDGDEMN+H+PQS+ T +E+ E+ MV K ++ PQSN+PVMGIVQDTL G R  T RD
Sbjct: 330  NADFDGDEMNLHMPQSYNTISELEEICMVSKQVLGPQSNKPVMGIVQDTLTGLRFFTIRD 389

Query: 542  TFIEKDVFMNILMWWEDFDGK------------VPQPTILKPRPLWTGKQVFNLIIPKQI 589
             F +K   M +L   E    +            + +P I KP+ LWTGKQ+ + I P   
Sbjct: 390  AFFDKREMMQVLYSIEQNINRRQDSSNYGILDLLNRPAIQKPKELWTGKQILSFIFPSV- 448

Query: 590  NLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
              ++T +   +N        D+ V I  GE++SG + KK++G S G LIH+I  + G   
Sbjct: 449  -FYQTQSEDPEN------LSDSAVVIIGGEIMSGIIDKKSVGASQGGLIHIITNDYGSKR 501

Query: 650  ARKFLGHTQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
              +F    Q ++  +L+  + FS+GIGDT+ADA T+  +   I  AKN+V  +I +AQ+ 
Sbjct: 502  ITQFFNDIQKIITKFLMNIHVFSMGIGDTVADADTLRVVRKAIDNAKNSVDEIILKAQNN 561

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             L+  PG TM ESFE++VN VLN ARD +G+S QKSL++ NN+KAMV +GSKGSFINISQ
Sbjct: 562  RLDRLPGMTMKESFESQVNFVLNKARDVSGTSTQKSLNQCNNMKAMVLSGSKGSFINISQ 621

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            +TACVGQQNVEGKRIPFGF  RTLPHF+K+DY  +SRGFVENSYL GL+P+EFFFHAMGG
Sbjct: 622  VTACVGQQNVEGKRIPFGFAYRTLPHFSKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGG 681

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTA+KT+ETGYIQRRLVKAMED  VK D +VR + G++ Q+ YGEDG D+ ++E 
Sbjct: 682  REGLIDTAIKTAETGYIQRRLVKAMEDATVKLDQSVRGASGNIYQYKYGEDGFDATFLEM 741

Query: 889  QTLDSLKMKKSEFDKAFRFEM---------DEENWNPNYMLQEYIDDLKTIKELRDVFDA 939
            Q ++  +   S F      +M          E+     Y L     DL+  K L D ++ 
Sbjct: 742  QKMNMKRGGNSTFKATHFVDMFSDIQYSVKKEQVSESIYRLLSSDVDLQ--KMLYDEYEY 799

Query: 940  EVQKL------EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPM 993
             V K+      E +   +   +     +S   P NL+R+I NA   F   P    D+ P 
Sbjct: 800  LVSKVFDFYDPEDESRSIVNRLCKGALAS---PCNLQRIINNAMHLF---PSPVGDVSPY 853

Query: 994  EVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEW 1053
             ++E+   L        GE+ L            NIL+R+  + K VL  ++L    F+W
Sbjct: 854  FILESTRNL-------GGENDL-----------LNILIRTHLSVKNVLCVYKLDLRGFQW 895

Query: 1054 VIGEIESRFLQSLVAP 1069
            V+  I+ + L + V P
Sbjct: 896  VVDTIKDKILTASVLP 911


>gi|312273881|gb|ADQ57310.1| RNA polymerase II largest subunit, partial [Nosema fumiferanae]
          Length = 939

 Score =  832 bits (2150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 448/1002 (44%), Positives = 621/1002 (61%), Gaps = 116/1002 (11%)

Query: 101  IMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDG 160
            I+  +CF CS++               +N KN L  I    K K  CEG           
Sbjct: 6    ILECICFYCSRLKVSR-----------KNLKNDLNAIWAVSKGKMVCEG----------- 43

Query: 161  EEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGV 220
             E  ++   GCG +QP +  EG+ ++A  K +           +  E K  L  E+V  +
Sbjct: 44   -ESTEEGFTGCGNKQPVIKKEGLNLVAFMKGE-----------DNTEGKVILNGEKVHSI 91

Query: 221  LKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMII 270
             K+I DED ++LG +  Y+RP+W+IL VL +PPP VRPS          DDLTH+L+ II
Sbjct: 92   FKKILDEDIEVLGFDLAYSRPEWLILTVLLVPPPSVRPSIVMEGMLRAEDDLTHKLSDII 151

Query: 271  RHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLK 330
            + N  L++ E  GAP HII ++ QLLQFH+AT  DN++ GQP+A Q+SGRP+KSI +RLK
Sbjct: 152  KSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLIDNDISGQPQALQKSGRPLKSISARLK 211

Query: 331  AKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKE 390
             KEGR+RGNLMGKRVDFSAR+VIT D  I+++++GVP  +A   T+PE +TP+NIE+L++
Sbjct: 212  GKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEVAKIHTFPEKITPFNIEKLEK 271

Query: 391  LVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQ 450
            LV  GP+  PG   A Y+IR DGQR+DL +     D  LE GY VERH+ +GD +LFNRQ
Sbjct: 272  LVANGPNEYPG---ANYVIRTDGQRIDLNF--NRGDIKLEEGYIVERHMQNGDTILFNRQ 326

Query: 451  PSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 510
            PSLHKMS+MGH++++M   TFRLNLSVTSPYNADFDGDEMN+H+PQ++ + +E+ E+ MV
Sbjct: 327  PSLHKMSMMGHKVRVMAGKTFRLNLSVTSPYNADFDGDEMNLHMPQNYNSISELEEICMV 386

Query: 511  PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFD---------- 560
            PK I+ PQSN+PVMGIVQDTL G R  T RD F +K+  M +L +  DF+          
Sbjct: 387  PKQILGPQSNKPVMGIVQDTLTGLRFFTVRDAFFDKNEMMQVL-YSIDFEKYYDIGLDSV 445

Query: 561  ---GK--------------VPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
               GK              + +P I KP+ LWTGKQ+ + I P   N+F   + +   + 
Sbjct: 446  IKKGKKLDMGAKEYSLMALLSKPAIQKPKQLWTGKQILSFIFP---NVFYKNSSNESREN 502

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
             +     T V I  GE++SG + KK +G + G L+H+I  + G      F+   Q ++  
Sbjct: 503  DLENVSVTSVVICGGEIMSGIIDKKAVGATQGGLVHIIANDFGYSRVTLFIDDIQEIITK 562

Query: 664  WLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            +L+  + FS+GIGDT+AD+ T++ +   I K+K++V  +I++AQ+  L+  PG TM ESF
Sbjct: 563  FLMNIHVFSMGIGDTVADSDTLKYVKQAIEKSKDSVDEIIRKAQNNRLDRLPGMTMKESF 622

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E++VN VLN ARD +G+S QKSL++ NN+KAMV +GSKGSFINISQ+TACVGQQNVEGKR
Sbjct: 623  ESQVNYVLNKARDVSGTSTQKSLNKCNNMKAMVLSGSKGSFINISQVTACVGQQNVEGKR 682

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF K+DY  +SRGFVENSYL GL+P+EFFFHAMGGREGLIDTA+KT+ET
Sbjct: 683  IPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDTAIKTAET 742

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKAMED  V+ DG+VR + G+V Q+LYGEDG D+ ++E Q + +   K+  F 
Sbjct: 743  GYIQRRLVKAMEDATVRLDGSVRGATGNVYQYLYGEDGFDATFLEMQRVQTTNFKEVHFI 802

Query: 903  KAFR----FEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL------EADRYQLA 952
              F     F + ++    + + +    D++  K L D +D  V+ +      E +   + 
Sbjct: 803  DMFSTDSTFAL-KKGAVSDQIYKLLCSDIELQKILYDEYDWLVKHVFDSYNPEDESQNVV 861

Query: 953  TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGE 1012
              +  +  +S   P NL+R+I NA   F+  P    D+ P  ++E    L        G 
Sbjct: 862  NRLYRNVIAS---PCNLQRIIHNAISMFQ-SP--VGDVSPYFILETTKDL-------GGT 908

Query: 1013 DPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWV 1054
            + L            N+L+R+  + K +L  ++L    F WV
Sbjct: 909  NEL-----------LNVLIRTHLSVKNILTVYKLDLNGFNWV 939


>gi|452823901|gb|EME30907.1| DNA-directed RNA polymerase II subunit A, partial [Galdieria
           sulphuraria]
          Length = 741

 Score =  832 bits (2148), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/774 (53%), Positives = 534/774 (68%), Gaps = 63/774 (8%)

Query: 8   SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCE 67
           S  E+ KV  +QFGILSP+EIR+ SV  I+     E+G+PK GGL D RLG IDR   C 
Sbjct: 7   SSVELKKVSALQFGILSPEEIRRYSVAPIQREIAFEQGRPKEGGLMDQRLGAIDRDFPCR 66

Query: 68  TCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDH----KFKQ 123
           TC ++  +CPGHFGH+ELA+P+++ GF+ + L ++R +C+ CSK+L + +D     + KQ
Sbjct: 67  TCHSSFLDCPGHFGHIELAQPVYNPGFLASTLKVLRCICYYCSKLLINTEDSSIASRLKQ 126

Query: 124 ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
             +I+    RL   L                        P  K    CG  QPKL  + +
Sbjct: 127 IEQIKKGTKRLGLFLSL----------------------PRLKECRFCGNAQPKLLRDAL 164

Query: 184 KMIAEYKAQRKKNDDQEQLPEP----VERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
            ++AE+             P+P     E++Q +TAE+   +LK +SDED  +LG + + +
Sbjct: 165 SIVAEF-------------PDPPEGGGEKRQQITAEKAYNILKHMSDEDADILGFSREQS 211

Query: 240 RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
           RPDWMI+ +L +PPP VRPS          DDLTH+L  I++ N  L+R ER GAPAH +
Sbjct: 212 RPDWMIITILSVPPPHVRPSIMMDATSRGEDDLTHKLGDIVKANNALKRLEREGAPAHAL 271

Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
           +E  QLLQ+H+ATY +NE+PG PR+ QRSGRP+KSI  RLK KEGRIRGNLMGKRVDFSA
Sbjct: 272 NEQLQLLQYHVATYMNNEIPGLPRSLQRSGRPLKSISQRLKGKEGRIRGNLMGKRVDFSA 331

Query: 350 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
           RTVITPDP I +D++GVP SIA+NLTYPE VTP +  RL+ LV  GP+  PG   AKYI+
Sbjct: 332 RTVITPDPNIRLDEVGVPKSIAMNLTYPEVVTPLSYGRLQALVANGPNEHPG---AKYIV 388

Query: 410 RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
           RDDGQR+DLRY+++ +D HLE+GYKVERHL DGD VLFNRQPSLHKMSIMGHR++I+PYS
Sbjct: 389 RDDGQRIDLRYVRRPADLHLEIGYKVERHLQDGDVVLFNRQPSLHKMSIMGHRVRILPYS 448

Query: 470 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
           TFRLNLS TSPYNADFDGDEMN+HVPQ  E +AE+LELMMVPK IVSPQ+N+PVMG+VQD
Sbjct: 449 TFRLNLSATSPYNADFDGDEMNLHVPQFLEGKAEILELMMVPKNIVSPQANKPVMGLVQD 508

Query: 530 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
           TLLGC   T RD FI +D+ MN+LM  E FDG++P P ILKP+ LWTGKQ+F++I P  +
Sbjct: 509 TLLGCSLFTMRDVFITRDMMMNLLMHIEGFDGQIPTPAILKPKELWTGKQLFSMITP-NV 567

Query: 590 NLFRTAAWH---ADNDKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
           N+ R A  H   +D+D      +T  DT V I  GEL+ G + K T+GT  GSLIHV W+
Sbjct: 568 NIIRFAETHVEESDSDPIFGPDMTIHDTRVVISGGELVCGVIDKSTVGTRAGSLIHVCWK 627

Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
           E GPDA   F+   Q L+N+WLLQ  FSIGIGDTIAD +TM  I  T+  A+  V  LI+
Sbjct: 628 EHGPDATCDFISSVQLLINHWLLQRGFSIGIGDTIADDETMNYIVRTMEAARQEVTLLIE 687

Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTA 757
           + Q+  ++ +PG+TMMES E+++N VLN AR++ GS+A +SL  SNNLK MV A
Sbjct: 688 KGQNGEIQCKPGKTMMESLEDQINSVLNQARNKVGSAAARSLPASNNLKRMVNA 741


>gi|120561174|gb|ABM26982.1| RNA polymerase II largest subunit [Vairimorpha cheracis]
          Length = 936

 Score =  830 bits (2145), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/1010 (45%), Positives = 610/1010 (60%), Gaps = 133/1010 (13%)

Query: 101  IMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDG 160
            I+  +CF CS++   +           +N K  L  I    K K  CEG           
Sbjct: 4    ILECICFYCSRLKVSK-----------KNLKPSLAMIWGVSKAKMVCEG----------- 41

Query: 161  EEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGV 220
             + L++   GCG +QP +  EG+ ++A  K +              E K  L  E+V  +
Sbjct: 42   -DLLEEGYTGCGNKQPVIKKEGLNLVAFMKGEDNN-----------EGKVILNGEKVHSI 89

Query: 221  LKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMII 270
             K+ISDED   LG + +++RP+W++L VL +PPP VRPS          DDLTH+L+ II
Sbjct: 90   FKKISDEDITALGFDLEFSRPEWLVLTVLLVPPPAVRPSIVMEGMLRAEDDLTHKLSDII 149

Query: 271  RHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLK 330
            + N  L++ E  GAP HII ++ QLLQFHIAT  DN++ GQP+A Q+SGRP+KSI +RLK
Sbjct: 150  KSNTYLKKYELEGAPGHIIRDYEQLLQFHIATLIDNDISGQPQALQKSGRPLKSISARLK 209

Query: 331  AKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKE 390
             KEGR+RGNLMGKRVDFSAR+VIT D  I+++++GVP  +A   T+PE +TP+N E+L+ 
Sbjct: 210  GKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPVEVAKIHTFPEKITPFNAEKLER 269

Query: 391  LVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQ 450
            LV  GP+  PG   A Y+IR DGQR+DL +     D  LE GY VERH+ DGD VLFNRQ
Sbjct: 270  LVANGPNEYPG---ANYVIRTDGQRIDLNF--NRGDIKLEEGYVVERHMQDGDIVLFNRQ 324

Query: 451  PSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 510
            PSLHKMS+MGH++++M   TFRLNLSVTSPYNADFDGDEMN+H+PQS+ + AE+ E+ MV
Sbjct: 325  PSLHKMSMMGHKVRVMAGKTFRLNLSVTSPYNADFDGDEMNLHMPQSYNSVAELEEICMV 384

Query: 511  PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFD---------- 560
            PK I+ PQSN+PVMGIVQDTL G R  T RD+F +K   M IL +  D D          
Sbjct: 385  PKQILGPQSNKPVMGIVQDTLTGLRFFTMRDSFFDKCEMMQIL-YSIDLDRYNDIGIDTV 443

Query: 561  ---GK--------------VPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDK 603
               GK              +  P I +P+ LWTGKQ+ + I P   N+F  AA +   + 
Sbjct: 444  TREGKRLDIKSKEYSLLRLLETPAIQRPKELWTGKQILSFIFP---NVFYQAASNEXVED 500

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
                  DT V I  GE++SG + KK +G + G L+H+I  + G      F   TQ +V  
Sbjct: 501  DRENISDTAVVICGGEIMSGIIDKKAVGATQGGLVHIIANDYGSRRVTLFFDDTQKIVTK 560

Query: 664  WLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            +L+  + FS+GIGDT+AD  T+  + + I  AK  V ++I +AQ   LE  PG TM ESF
Sbjct: 561  FLMNIHVFSMGIGDTVADTDTLTRVREAIESAKGAVHDIIHKAQSNRLERLPGMTMKESF 620

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E++VN VLN ARD +G+S Q+SL+  NN+KAMV +GSKGSFINISQ+TACVGQQNVEGKR
Sbjct: 621  ESQVNLVLNKARDVSGTSTQRSLNRCNNMKAMVLSGSKGSFINISQVTACVGQQNVEGKR 680

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPFGF  RTLPHF+K+DY  +SRGFVENSYL GL+P+EFFFHAMGGREGLIDTA+KT+ET
Sbjct: 681  IPFGFAYRTLPHFSKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLIDTAIKTAET 740

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFD 902
            GYIQRRLVKAMED  VK D +VR + G++ QF YGEDG D+ ++E Q + +   KK+ F 
Sbjct: 741  GYIQRRLVKAMEDATVKADRSVRGADGNIYQFQYGEDGFDATFLEMQRIKTSSFKKTHFI 800

Query: 903  KAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ------------ 950
              F         + +Y ++      +  K L    D E+QKL  D Y+            
Sbjct: 801  DMFS--------DLSYAVKREAVSDQIYKLLSS--DFELQKLLFDEYEWLVSRVFDFYSP 850

Query: 951  ------LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
                  +   +   G +S   P NL+R++ NA   F   P    D+ P  +++    L  
Sbjct: 851  QDESQSIVNSLCRGGFAS---PCNLQRIVNNAIHMF-ASP--VGDVSPYLILDTTRSL-- 902

Query: 1005 RLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWV 1054
                  G++ L            NIL+R+T + + VL  ++    AF WV
Sbjct: 903  -----GGDNEL-----------LNILIRTTLSVRNVLTVYKFNISAFNWV 936


>gi|327242121|gb|AEA40839.1| RNA polymerase II largest subunit [Trichomonas sp. RWG-2007-2]
          Length = 1019

 Score =  825 bits (2130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 447/1043 (42%), Positives = 627/1043 (60%), Gaps = 60/1043 (5%)

Query: 81   GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDA 140
            G++ LA+P FH+GF+     +++ VC  C ++L    D + +  +     KNR  K+ + 
Sbjct: 1    GYIRLAEPFFHVGFLPHCYKLLQMVCHKCGRVLCSYSDPEIQYIVTHYKGKNRFLKLFEK 60

Query: 141  CKNKT-KCEGGDEIDVPGQ---------------DGEEPLKKNKGGCGAQQPKLTIEGMK 184
              +K+ KC+   ++  P +               D      + K  C A  P +  +G  
Sbjct: 61   IASKSGKCQHSPDLKNPNEPDVCLDERFWELVNGDSHSEHVRVKKPCNATVPAIE-QGKD 119

Query: 185  MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
             + + K   K  +D             L+AE VL + + ISD+D +LLG NPK + P WM
Sbjct: 120  FLIKLKDVSKTEED------------YLSAEVVLRIFENISDQDVRLLGFNPKRSHPKWM 167

Query: 245  ILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
            IL++LP+PP  VRP            DD+TH+L+ II  N+ LR Q    +    + E  
Sbjct: 168  ILKILPVPPLAVRPQVVSPGQSAPSQDDITHKLSDIIICNKRLRAQRSESSTDTAMKETR 227

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
             LLQ+HI TY  N+ P   RA  +SGRP+K I  RLK KEG +RG+L GKR D+SAR+VI
Sbjct: 228  TLLQYHITTYMINDKPSIERAVTKSGRPLKVISQRLKGKEGHLRGHLSGKRDDYSARSVI 287

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            +PDP+I+IDQ+GVP  +A  LT+PE VTP N + L+ +V  G H   G  GA ++I D G
Sbjct: 288  SPDPSISIDQVGVPEQLAKILTFPEVVTPTNQKWLESIVMKG-HDDLG--GANFVINDHG 344

Query: 414  QRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
             R DL      S   L  GY VERHL D D V+FNRQPSLHKMS+MGHR  IM   TFRL
Sbjct: 345  TRTDLSCCTDLSTITLSPGYIVERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRL 404

Query: 474  NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
            NL  T+PYNADFDGDEMN+HVPQS   R EV  +M VPK I+SPQ+N+PV+G+VQD LLG
Sbjct: 405  NLCDTTPYNADFDGDEMNLHVPQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLG 464

Query: 534  CRKITKRDTFIEKDVFMNILMWW-EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLF 592
            CR ++KRDTF+ ++  MN++MW     D  +P P ILKP  LW+GKQVF+L +PK     
Sbjct: 465  CRLLSKRDTFLTRNQVMNLMMWLPTTKDTILPPPCILKPVQLWSGKQVFSLFLPK----I 520

Query: 593  RTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
               ++  D    D+  +   D  V I  G LL+G L KKT+  S GSLIHV+      + 
Sbjct: 521  SHDSYSQDANKMDQNSIPLADRHVIIRDGNLLAGILDKKTVARSEGSLIHVVINSYNTNI 580

Query: 650  ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
            A+ FL  TQ +VN WL    FSIG+ D +     ++ +   I + ++ V+  I +AQD  
Sbjct: 581  AKDFLNQTQLIVNNWLEHRGFSIGLIDCVVPDFVLQEVKHEIDEVESKVQATIIKAQDGQ 640

Query: 710  LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
            LE  PG + M+SFE +VN + N    +        +   N+L  M++AGSKG+  N+SQ+
Sbjct: 641  LERMPGMSYMQSFETEVNNLTNEILSKTYKVINAKIRRDNSLSEMLSAGSKGADTNMSQI 700

Query: 770  TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
               VGQQN+EGKR+ FGF  RTLPHF K +YG   RGF +NSY+ GLTP EF FHAMGGR
Sbjct: 701  IGVVGQQNMEGKRVKFGFNGRTLPHFQKHEYGLVERGFCKNSYIAGLTPPEFLFHAMGGR 760

Query: 830  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
             G+IDTA KTS+TGYIQRRLVK+ME   V YDGTVRNS  +++QF+YG DG+D+  +E+Q
Sbjct: 761  TGIIDTACKTSDTGYIQRRLVKSMESHHVAYDGTVRNSQNEIVQFIYGGDGLDATGLETQ 820

Query: 890  TLDSLKMKKSEFDKAFRFEMDEENWNP----NYMLQEYIDDLKTIKELRDVFDAEVQKLE 945
             L  + +   EF K +    ++  +      +++L E++      K L++    E  +L 
Sbjct: 821  KLALVTLNDKEFMKKYHLASEDPTFGQVEMDDFVLDEFLKTPNKDKFLKE----EENRLR 876

Query: 946  ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPR-RPSDMHPMEVVEAVDKLQE 1004
              R  L  EI  +G ++  LPVN+ R+I ++Q+ F ++     SD++P++++  VD+   
Sbjct: 877  EYREILQKEIFPNGSNTVVLPVNIARIIESSQRQFDINVHVSKSDLNPLDIISRVDECVN 936

Query: 1005 RLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQ 1064
             L VV G D +S   Q+NATL   I+L S  ++K+ + E+RL  +AF++++G I+ RF +
Sbjct: 937  SLIVVKGNDNISRTEQENATLLLRIMLYSHLSAKQCIFEYRLNEQAFKYILGSIKDRFYR 996

Query: 1065 SLVAPGEMIGCVAAQSIGEPATQ 1087
            S+VAPGEM+G +A QSIGEP+TQ
Sbjct: 997  SIVAPGEMVGTIAGQSIGEPSTQ 1019


>gi|120561237|gb|ABM27004.1| RNA polymerase II largest subunit, partial [Chytriomyces hyalinus]
          Length = 960

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/1040 (43%), Positives = 630/1040 (60%), Gaps = 115/1040 (11%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            H+ L  PM++IG++KTV  I+  VC  C+++     DHK+++   I   K++ K   ++C
Sbjct: 1    HILLNCPMYNIGYIKTVKKILECVCHRCARLRLQPGDHKYRKLTMI---KDKFKYAWESC 57

Query: 142  KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQ 201
            KNK  CE  D                   C  Q   +   G+++  +   Q+K ++   +
Sbjct: 58   KNKVVCEYPD-------------------CETQLLPIRRHGIELFFD---QKKVDNKLPR 95

Query: 202  LPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS-- 259
            +P        L A++   +L++I+DE C+LLGLNP  +RP+WMI  V+P+PPP +RPS  
Sbjct: 96   VP--------LYADQAKSILEKITDETCRLLGLNPDSSRPEWMIFTVIPVPPPCMRPSVH 147

Query: 260  ----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELP 309
                      DDLTH L  IIR+N  L + E +        E+ + LQ HI TY DNE+ 
Sbjct: 148  IDVANGGKGEDDLTHMLTNIIRYNNLLGKNESSKTAI----EYKEQLQIHITTYIDNEVS 203

Query: 310  GQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWS 369
            G P A Q+ GR IKS+ +RLK KEGRIRG+LMGKRVDFSARTVIT DP I+I+++GVP S
Sbjct: 204  GVPPALQKGGRMIKSLSARLKGKEGRIRGHLMGKRVDFSARTVITGDPHISIEEVGVPLS 263

Query: 370  IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHL 429
            +A  LT+PE VT YN++R++ LV    + P    GA+Y+I + G+R+DL   K +    +
Sbjct: 264  VAKTLTFPERVTSYNLDRMQALVNNAKNYP----GARYVINERGRRIDLEVAKTTP--LI 317

Query: 430  ELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDE 489
            E+G  VERH+  GD VLFNRQPSLHKMS+M H +++MPYS+FRLN++V +PYNADFDGDE
Sbjct: 318  EIGDIVERHMVTGDTVLFNRQPSLHKMSMMAHIVRVMPYSSFRLNVNVCAPYNADFDGDE 377

Query: 490  MNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVF 549
            MN+H+PQS+ET AE+  L MV   +VSPQSN+PV G+VQD L G RK+T RDTF+  +  
Sbjct: 378  MNLHMPQSYETVAELQTLSMVSSLLVSPQSNKPVNGLVQDALCGIRKLTMRDTFVNFEDM 437

Query: 550  MNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGI---- 605
            M+++M  ++F   +P P I KP PLWTGKQ+ +L +P  I+L      HAD++       
Sbjct: 438  MDLVMCLKEFP-VIPPPAIFKPIPLWTGKQIISLCLP-DIDLTGNTLTHADHEDIFRSTT 495

Query: 606  -----------------LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
                              T  D+ V I+ G ++ G LCKKT+G S+G ++H+I+ + GP 
Sbjct: 496  KDLNETCTRKAESEFYSATPTDSRVLIQSGIIVHGYLCKKTVGASSGGIVHIIYNDHGPR 555

Query: 649  AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDK 708
            AA  F+ ++  +VN WL  + FS+GIGD +    T    + TI    + V+  I+     
Sbjct: 556  AACDFIDNSSRIVNAWLTNSGFSVGIGDALVSEITHAVFSSTIDTQLHKVQKTIESYHAN 615

Query: 709  SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQ 768
             L+PE      ++ EN++  +L  ARD AG +   S    NNLK MV AGSKGS +NI Q
Sbjct: 616  ELKPEGNFDCEQTKENQIVGLLAKARDSAGKTTLISGHPDNNLKQMVEAGSKGSVLNICQ 675

Query: 769  MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
            ++ACVGQQ VEGKRIPFGF DRTLPHFTK D+ P +RGFV NS+++GLTP E FFHAMGG
Sbjct: 676  VSACVGQQMVEGKRIPFGFKDRTLPHFTKYDHSPAARGFVRNSFVKGLTPSELFFHAMGG 735

Query: 829  REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES 888
            REGLIDTA+KT+ETGYIQRRLVKA+EDI VK DGTVRNS  D+IQF YGEDG D   IE 
Sbjct: 736  REGLIDTAIKTAETGYIQRRLVKALEDITVKSDGTVRNSRDDIIQFYYGEDGFDGTAIEY 795

Query: 889  QTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
            QT  ++ + +SE                  +   Y + +          D+E  +L+ D+
Sbjct: 796  QTFPTMMLSESE------------------LYSRYYNGI----------DSEYAQLKKDQ 827

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKV 1008
             +L   +    +  WPLP+N+ R+I   +K      R  +   P     A    Q+   V
Sbjct: 828  -ELLRRVLRLAEDRWPLPLNIMRMIITVKK------RAITRGLPDTEFTAEYIFQQTKAV 880

Query: 1009 VPGEDP--LSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
            V    P  L++ ++ N +  F IL+ S  +SK+VL  H+L++  F++++  I+ ++ + L
Sbjct: 881  VNSLRPSKLNINSEYNVSALFGILVSSILSSKQVLYVHKLSKCQFDYLLILIKEKYHRGL 940

Query: 1067 VAPGEMIGCVAAQSIGEPAT 1086
            V  GE +G +AAQSIGEPAT
Sbjct: 941  VQAGESVGVIAAQSIGEPAT 960


>gi|327242123|gb|AEA40840.1| RNA polymerase II largest subunit [Trichomitus batrachorum]
          Length = 1057

 Score =  822 bits (2123), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/1074 (42%), Positives = 649/1074 (60%), Gaps = 85/1074 (7%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKI---- 137
            H++LA  ++HIG++  V  I++ VC +CS++L    D   ++A+     K RL  I    
Sbjct: 1    HIKLATVLYHIGYIDIVYKILQCVCPSCSRLLVGYADPHVQEAVLRYKGKKRLLAIHAIA 60

Query: 138  ----LDACKN--KTKCEGG------------DEID----------VPGQDGEEPLKKNKG 169
                   CK+  K K   G            +E D          V G D +E  K+   
Sbjct: 61   TKSSTRYCKHLEKKKSTKGVSGPNQAQQSNPEEADYVKNDRFWKIVTGSDDQEKWKRESQ 120

Query: 170  GCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDC 229
             CG   P+LT        E     KK D     P+ +E      + +VL +L  IS++D 
Sbjct: 121  PCGNAVPELT-------KENDGHIKKKDPARGEPDLIE------SSKVLEILHNISEQDI 167

Query: 230  QLLGLNPKYARPDWMILQVLPIPPPPVRP---------SDDLTHQLAMIIRHNENLRRQE 280
            ++LG +P+  RP+WM++++LP+PPP VRP          D+++HQL  II  N+ ++   
Sbjct: 168  RILGFDPQKCRPEWMMVKILPVPPPHVRPFIRQGGHVTQDEVSHQLGQIILLNKKVQEDI 227

Query: 281  RNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 340
             NG PA    E    LQ  + TYF N+ P   RAT ++GRPIK+I  RLK K G IRG+L
Sbjct: 228  TNGIPATKRQEDEFALQQCVTTYFINDKPSIDRATLKNGRPIKAISQRLKGKMGHIRGHL 287

Query: 341  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 400
             GKRV+FSAR+VI+PDP+I+IDQ+GVP+ +A  LT+PE V   NI+ +++LV  GP    
Sbjct: 288  SGKRVNFSARSVISPDPSISIDQVGVPFELAKILTFPEVVNSLNIKDMQQLVYNGP---D 344

Query: 401  GKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 460
             + GAK +I   G R  L   ++S+  HL+ G  VERHL D D V+FNRQPSLHKMS+MG
Sbjct: 345  SQDGAKAVITPLGARFSLGDTQESTVQHLDYGSVVERHLRDNDIVIFNRQPSLHKMSMMG 404

Query: 461  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
            H  K++   +FRLNL VT+PYNADFDGDEMN+HV Q+ + RAEV  +M VP  I++PQSN
Sbjct: 405  HYAKLIRGQSFRLNLCVTTPYNADFDGDEMNLHVVQTQQARAEVKHIMAVPYQIITPQSN 464

Query: 521  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDF--DGKVPQPTILKPRPLWTGK 578
            +P++G+VQD L+GCR ++ RDTF+ ++  MN++MW  D   D  +P P I+ P+ LW+GK
Sbjct: 465  KPIIGLVQDCLVGCRLLSIRDTFLTRNELMNLMMWIMDTKPDLVLPPPCIVAPQELWSGK 524

Query: 579  QVFNLIIPKQINL--FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGS 636
            QVF+L +P QINL  F + A     DK   ++ D  V I  G LL+G +  KT+  S GS
Sbjct: 525  QVFSLFLP-QINLDKFSSPADDKGADKSWNSSDDVRVIIRDGHLLAGIIDSKTVAKSEGS 583

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            L HV+      D A+ FL  TQ +VN WL    FS+GI   +   + ++ +   +++ K 
Sbjct: 584  LTHVVINSYSLDTAKAFLNQTQLVVNNWLENRGFSMGISTCVTTQEALDKVAGQLTELKA 643

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
             ++ +I+ A+   LE  PG T+  +FE K+ +V N   +++ + A ++    N L  M+ 
Sbjct: 644  KIETIIEDAKHDRLEKMPGLTLTGTFEAKIMEVANDFTEKSSAVAIQAAPFWNALLQMMQ 703

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
            AGSKGS +NI+Q+ ACVGQQ++EG+R+ FGF +RTLPH+ KDD+  ESRGFVE+SY++GL
Sbjct: 704  AGSKGSKVNIAQIIACVGQQSIEGERVRFGFKNRTLPHYVKDDFDLESRGFVEHSYIQGL 763

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
            TPQEFFFH+MGGR G+IDTA KT++TGYIQRRL K ME   V+YDGTVR+S+ +V+QFLY
Sbjct: 764  TPQEFFFHSMGGRTGIIDTACKTADTGYIQRRLCKTMESHCVQYDGTVRDSMNNVVQFLY 823

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKT------- 929
            G DG+D V IE+Q+L  + +   EFD  ++  +++  +   Y+    I DL+        
Sbjct: 824  GGDGIDPVQIETQSLSLIALSDQEFDSMYKMNINDPVFGAGYLESSIISDLRKMEGTPTT 883

Query: 930  --------------IKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWN 975
                          I     V   E+  L   R  L  EI  +G+      VNLKR+I  
Sbjct: 884  TITGNFGGRSEEVEITRPSAVLQEELDTLLHFRQILREEIFPNGNQKLYASVNLKRIIET 943

Query: 976  AQKTFKVDPRRP-SDMHPMEVVEAVDKLQERLKVV-PGEDPLSVEAQKNATLFFNILLRS 1033
            AQ+ + ++     SD++P+ VV  V KL  RL +V   +D +  E Q N TL   IL+ +
Sbjct: 944  AQRKYNINEYTSLSDLNPVLVVSEVKKLVSRLIIVQQNKDKIGREVQDNGTLLLRILIHA 1003

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQ 1087
            T ASK +++++RL+++AF  +IGEIE RF +++V+PGEM+G +A QSIGEPATQ
Sbjct: 1004 TLASKPLIEKNRLSQKAFRSIIGEIEDRFYRTIVSPGEMVGTIAGQSIGEPATQ 1057


>gi|327242129|gb|AEA40843.1| RNA polymerase II largest subunit [Trichomonas vaginalis]
 gi|327242133|gb|AEA40845.1| RNA polymerase II largest subunit [Trichomonas vaginalis]
 gi|327242137|gb|AEA40847.1| RNA polymerase II largest subunit [Trichomonas vaginalis]
          Length = 1018

 Score =  821 bits (2120), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1040 (42%), Positives = 625/1040 (60%), Gaps = 56/1040 (5%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            ++ LA+P FH+GF+     +++ VC  C ++L    D + +  +     KNR  K+ +  
Sbjct: 1    YIRLAEPFFHVGFLPHCYKLLQMVCHKCGRVLCSYSDPEIQYIVTHYKGKNRFLKLFEKI 60

Query: 142  KNKT-KCEGGDEIDVPGQ---------------DGEEPLKKNKGGCGAQQPKLTIEGMKM 185
             +K+ KC+   ++  P +               D      + K  C A  P +  +G   
Sbjct: 61   ASKSGKCQHSPDLKNPNEPDVCLDERFWELVNGDSHSEHVRVKKPCNATVPAIE-QGKDF 119

Query: 186  IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
            + + K   K  +D             L+AE VL + + ISD+D +LLG NPK + P WMI
Sbjct: 120  LIKLKDVSKTEED------------YLSAEVVLRIFENISDQDVRLLGFNPKRSHPKWMI 167

Query: 246  LQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            L++LP+PP  VRP            DD+TH+L+ II  N+ LR Q    +    + E   
Sbjct: 168  LKILPVPPLAVRPQVVSPGQSAPSQDDITHKLSDIIICNKRLRAQRSESSTDTAMKETRT 227

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQ+HI TY  N+ P   RA  +SGRP+K I  RLK KEG +RG+L GKR D+SAR+VI+
Sbjct: 228  LLQYHITTYMINDKPSIERAVTKSGRPLKVISQRLKGKEGHLRGHLSGKRDDYSARSVIS 287

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP+I+IDQ+GVP  +A  LT+PE VTP N + L+ +V  G H   G  GA ++I D G 
Sbjct: 288  PDPSISIDQVGVPEQLAKILTFPEVVTPTNQKWLESIVMKG-HDDLG--GANFVINDHGT 344

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R DL      S   L  GY VERHL D D V+FNRQPSLHKMS+MGHR  IM   TFRLN
Sbjct: 345  RTDLSCCTDLSTITLSPGYIVERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLN 404

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            L  T+PYNADFDGDEMN+HVPQS   R EV  +M VPK I+SPQ+N+PV+G+VQD LLGC
Sbjct: 405  LCDTTPYNADFDGDEMNLHVPQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGC 464

Query: 535  RKITKRDTFIEKDVFMNILMWW-EDFDGKVPQPTILKPRPLWTGKQVFNLIIPK-QINLF 592
            R ++KRDTF+ ++  MN++MW     D  +P P ILKP  LW+GKQVF+L +PK   N +
Sbjct: 465  RLLSKRDTFLTRNQVMNLMMWLPTTKDTILPPPCILKPVQLWSGKQVFSLFLPKISHNSY 524

Query: 593  RTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARK 652
               A   D +   +   D  V I  G LL+G L KKT+  S GSLIHV+      + A+ 
Sbjct: 525  SQDANKMDQNS--IPLADRHVIIRDGNLLAGILDKKTVARSEGSLIHVVINSYNTNIAKD 582

Query: 653  FLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEP 712
            FL  TQ +VN WL    FSIG+ D +     ++ +   I   ++ V+  I +AQD  LE 
Sbjct: 583  FLNQTQLIVNNWLEHRGFSIGLIDCVVPDFVLQEVKHEIDDVESKVQATIIKAQDGQLER 642

Query: 713  EPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 772
             PG + M+SFE +VN + N    +        +   N+L  M++AGSKG+  N+SQ+   
Sbjct: 643  MPGMSYMQSFETEVNNLTNEILSKTYKVINAKIRRDNSLSEMLSAGSKGADTNMSQIIGV 702

Query: 773  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 832
            VGQQN+EGKR+ FGF  RTLPHF K +YG   RGF +NSY+ GLTP EF FHAMGGR G+
Sbjct: 703  VGQQNMEGKRVKFGFNGRTLPHFQKHEYGLVERGFCKNSYIAGLTPPEFLFHAMGGRTGI 762

Query: 833  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLD 892
            IDTA KTS+TGYIQRRLVK+ME   V YDGTVRNS  +++QF+YG DG+D+  +E+Q L 
Sbjct: 763  IDTACKTSDTGYIQRRLVKSMESHHVAYDGTVRNSQNEIVQFIYGGDGLDATGLETQRLA 822

Query: 893  SLKMKKSEFDKAFRFEMDEENWNP----NYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
             + +   +F K +    ++  +      +++L E++      K L++    E  +L   R
Sbjct: 823  LVTLNDEDFMKKYHLATEDPTFGQVEMDDFVLDEFLKTPNKDKFLKE----EENRLREYR 878

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPR-RPSDMHPMEVVEAVDKLQERLK 1007
              L  EI  +G ++  +PVN+ R+I ++Q+ F ++     SD++P++++  VD+    L 
Sbjct: 879  EILQKEIFPNGSNTVVVPVNIARIIESSQRQFDINVHVSKSDLNPLDIISRVDECVNSLI 938

Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            VV G D +S   Q+NATL   I+L S  ++K+ + E+RL  +AF++++G I+ RF +S+V
Sbjct: 939  VVKGNDNISRTEQENATLLLRIMLYSHLSAKQCIFEYRLNEQAFKYILGSIKDRFYRSIV 998

Query: 1068 APGEMIGCVAAQSIGEPATQ 1087
            APGEM+G +A QSIGEP+TQ
Sbjct: 999  APGEMVGTIAGQSIGEPSTQ 1018


>gi|327242135|gb|AEA40846.1| RNA polymerase II largest subunit [Trichomonas vaginalis]
          Length = 1018

 Score =  819 bits (2115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/1040 (42%), Positives = 625/1040 (60%), Gaps = 56/1040 (5%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDAC 141
            ++ LA+P FH+GF+     +++ +C  C ++L    D + +  +     KNR  K+ +  
Sbjct: 1    YIRLAEPFFHVGFLPHCYKLLQMLCHKCGRVLCSYSDPEIQYIVTHYKGKNRFLKLFEKI 60

Query: 142  KNKT-KCEGGDEIDVPGQ---------------DGEEPLKKNKGGCGAQQPKLTIEGMKM 185
             +K+ KC+   ++  P +               D      + K  C A  P +  +G   
Sbjct: 61   ASKSGKCQHSPDLKNPNEPDVCLDERFWELVNGDSHSEHVRVKKPCNATVPAIE-QGKDF 119

Query: 186  IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
            + + K   K  +D             L+AE VL + + ISD+D +LLG NPK + P WMI
Sbjct: 120  LIKLKDVSKTEED------------YLSAEVVLRIFENISDQDVRLLGFNPKRSHPKWMI 167

Query: 246  LQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
            L++LP+PP  VRP            DD+TH+L+ II  N+ LR Q    +    + E   
Sbjct: 168  LKILPVPPLAVRPQVVSPGQSAPSQDDITHKLSDIIICNKRLRAQRSESSTDTAMKETRT 227

Query: 295  LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
            LLQ+HI TY  N+ P   RA  +SGRP+K I  RLK KEG +RG+L GKR D+SAR+VI+
Sbjct: 228  LLQYHITTYMINDKPSIERAVTKSGRPLKVISQRLKGKEGHLRGHLSGKRDDYSARSVIS 287

Query: 355  PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
            PDP+I+IDQ+GVP  +A  LT+PE VTP N + L+ +V  G H   G  GA ++I D G 
Sbjct: 288  PDPSISIDQVGVPEQLAKILTFPEVVTPTNQKWLESIVMKG-HDDLG--GANFVINDHGT 344

Query: 415  RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
            R DL      S   L  GY VERHL D D V+FNRQPSLHKMS+MGHR  IM   TFRLN
Sbjct: 345  RTDLSCCTDLSTITLSPGYIVERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLN 404

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            L  T+PYNADFDGDEMN+HVPQS   R EV  +M VPK I+SPQ+N+PV+G+VQD LLGC
Sbjct: 405  LCDTTPYNADFDGDEMNLHVPQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGC 464

Query: 535  RKITKRDTFIEKDVFMNILMWW-EDFDGKVPQPTILKPRPLWTGKQVFNLIIPK-QINLF 592
            R ++KRDTF+ ++  MN++MW     D  +P P ILKP  LW+GKQVF+L +PK   N +
Sbjct: 465  RLLSKRDTFLTRNQVMNLMMWLPTTKDTILPPPCILKPVQLWSGKQVFSLFLPKISHNSY 524

Query: 593  RTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARK 652
               A   D +   +   D  V I  G LL+G L KKT+  S GSLIHV+      + A+ 
Sbjct: 525  SQDANKMDQNS--IPLADRHVIIRDGNLLAGILDKKTVARSEGSLIHVVINSYNTNIAKD 582

Query: 653  FLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEP 712
            FL  TQ +VN WL    FSIG+ D +     ++ +   I   ++ V+  I +AQD  LE 
Sbjct: 583  FLNQTQLIVNNWLEHRGFSIGLIDCVVPDFVLQEVKHEIDDVESKVQATIIKAQDGQLER 642

Query: 713  EPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 772
             PG + M+SFE +VN + N    +        +   N+L  M++AGSKG+  N+SQ+   
Sbjct: 643  MPGMSYMQSFETEVNNLTNEILSKTYKVINAKIRRDNSLSEMLSAGSKGADTNMSQIIGV 702

Query: 773  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 832
            VGQQN+EGKR+ FGF  RTLPHF K +YG   RGF +NSY+ GLTP EF FHAMGGR G+
Sbjct: 703  VGQQNMEGKRVKFGFNGRTLPHFQKHEYGLVERGFCKNSYIAGLTPPEFLFHAMGGRTGI 762

Query: 833  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLD 892
            IDTA KTS+TGYIQRRLVK+ME   V YDGTVRNS  +++QF+YG DG+D+  +E+Q L 
Sbjct: 763  IDTACKTSDTGYIQRRLVKSMESHHVAYDGTVRNSQNEIVQFIYGGDGLDATGLETQRLA 822

Query: 893  SLKMKKSEFDKAFRFEMDEENWNP----NYMLQEYIDDLKTIKELRDVFDAEVQKLEADR 948
             + +   +F K +    ++  +      +++L E++      K L++    E  +L   R
Sbjct: 823  LVTLNDEDFMKKYHLATEDPTFGQVEMDDFVLDEFLKTPNKDKFLKE----EENRLREYR 878

Query: 949  YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPR-RPSDMHPMEVVEAVDKLQERLK 1007
              L  EI  +G ++  +PVN+ R+I ++Q+ F ++     SD++P++++  VD+    L 
Sbjct: 879  EILQKEIFPNGSNTVVVPVNIARIIESSQRQFDINVHVSKSDLNPLDIISRVDECVNSLI 938

Query: 1008 VVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLV 1067
            VV G D +S   Q+NATL   I+L S  ++K+ + E+RL  +AF++++G I+ RF +S+V
Sbjct: 939  VVKGNDNISRTEQENATLLLRIMLYSHLSAKQCIFEYRLNEQAFKYILGSIKDRFYRSIV 998

Query: 1068 APGEMIGCVAAQSIGEPATQ 1087
            APGEM+G +A QSIGEP+TQ
Sbjct: 999  APGEMVGTIAGQSIGEPSTQ 1018


>gi|329132883|gb|AEB78332.1| RNA polymerase II largest subunit [Parabodo caudatus]
          Length = 1035

 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/1086 (41%), Positives = 649/1086 (59%), Gaps = 91/1086 (8%)

Query: 82   HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK---IRNPKNRLKKIL 138
            + +LA+PMF+IGF  TVL+ +R VC NC K+L   +    ++ L+   +     RL++I 
Sbjct: 1    YADLAEPMFNIGFFDTVLATLRCVCQNCGKLLLSNEKEAERRKLERTFLLKGNARLREIS 60

Query: 139  DACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDD 198
                   KC                       C  QQ +L     + +  Y     K D 
Sbjct: 61   KISPKGGKCPS---------------------CQYQQARLG----RFMTLYPGLVIKAD- 94

Query: 199  QEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRP 258
                     +           VL +IS ED  +LG +P+ A P  ++++ LPIPPP VRP
Sbjct: 95   ---------KDTVWYGTDAYRVLDKISVEDAIMLGFDPRRAHPRDLLIKALPIPPPAVRP 145

Query: 259  S---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNE-- 307
            +         ++LT +L  IIR NE L R+  + +P+ +++   +LLQ  +ATYF+N   
Sbjct: 146  AVSFGSGVSENELTAKLTSIIRLNERLGREIADNSPSDMVASTRRLLQADLATYFNNAST 205

Query: 308  LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVP 367
                 + +Q S   +KSI  RLK K+GR+RGNLMGKRV+FSARTVIT DP I++D++GVP
Sbjct: 206  YYKPAKVSQTSKMQLKSIYERLKGKQGRLRGNLMGKRVNFSARTVITGDPNIDVDEVGVP 265

Query: 368  WSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK--KSS 425
            +S+A+ LT+PE V   N  RL ++V    +P      A  I+ + G    L  +K  +  
Sbjct: 266  FSVAMTLTFPERVNHLNRHRLTQIVRSSQYPS-----ANAIVSNSGTVWRLNGMKPERRQ 320

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
               LE+G  VER + +GD VLFNRQP+LH+MS+MGHR++++ Y+TFRLNLS T+PYNADF
Sbjct: 321  QLTLEIGDIVERQVLNGDVVLFNRQPTLHRMSMMGHRVRVLNYNTFRLNLSCTTPYNADF 380

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGIVQD+LLG  +IT ++ F++
Sbjct: 381  DGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGIVQDSLLGSWRITDKEVFLD 440

Query: 546  KDVFMNILMWWEDFD---GKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADND 602
            K    N+ MW  D      ++P P ILKPRPLWTGKQ+F+LI+ ++ N+ R      +N 
Sbjct: 441  KYFVQNVFMWLSDLIPSLTELPIPAILKPRPLWTGKQMFSLIL-RETNITR------ENL 493

Query: 603  KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVN 662
            K      D    I  G++L G + K  +G S GS IHVI+ + G DA  +F+   Q L  
Sbjct: 494  KKSFPHDDAGTLIRNGDVLVGQVDKGLIGASPGSFIHVIFNDRGSDAVAQFINGVQRLTT 553

Query: 663  YWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
            ++L   +FS+G+ DT+ D  T+ ++ + I+ A+  V+N    A +K L    G T+M SF
Sbjct: 554  HYLYHFSFSVGVQDTLGDENTLRSVKEMIADARKQVRNRGSAANEKRLTRRAGMTLMGSF 613

Query: 723  ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
            E +VN +LN  R++A    +  +   N+ + MV AGSKGS +NI Q+ A VGQQN+ G R
Sbjct: 614  EFEVNSILNNVREKASPMVKNGVHRRNSFRVMVDAGSKGSPLNIYQIVAAVGQQNIFGAR 673

Query: 783  IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
            IPF F  RTLPHF  DDYG  S+G V   Y+ GL P EFFFH MGGREGLIDTAVKT+ET
Sbjct: 674  IPFYFRRRTLPHFMLDDYGDASKGHVSRGYVEGLKPYEFFFHTMGGREGLIDTAVKTAET 733

Query: 843  GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES-QTLDSLKMKKSEF 901
            GY QR+LVKAMED+ V YDGTVRN+  +V+QF YGEDG+D   IES + +D +    ++ 
Sbjct: 734  GYFQRKLVKAMEDLHVAYDGTVRNADQEVVQFTYGEDGLDGARIESNEKIDMVYYSNNKM 793

Query: 902  DKAFRFEMDEE-----NWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIA 956
             + F+FE  E+     N+    M       LK      D+ ++E + L   R    + + 
Sbjct: 794  KETFKFEYQEDGTFAANFGGVNMAPSVQAALKRDPRNLDILESEFKALMKSREAFRSWLI 853

Query: 957  TSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP-----SDMHPMEVVEAVDKLQERL-KVVP 1010
              G  +  LPVNL R+I NAQ    ++ RR      S+++P+ +++ V +L + L K  P
Sbjct: 854  APGAPAQSLPVNLTRVIRNAQ----IEGRRSTELTRSNLNPINIIQDVRRLLDDLSKCHP 909

Query: 1011 G---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
                       +P S E  +NA   F++ ++S  ASKRV+ EH+L  ++FE V+ +I  +
Sbjct: 910  CVGRGPNGTYTNPHSQERVENALRIFSVHVQSMLASKRVINEHKLDSKSFELVLKQIRLK 969

Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
            +LQS++  GEMIG + AQS GEPATQMTLNTFH AG+S+KNVTLGVPRL E+++V+K+ +
Sbjct: 970  YLQSVLVAGEMIGAMTAQSCGEPATQMTLNTFHNAGISSKNVTLGVPRLLELLSVSKQQR 1029

Query: 1122 TPSLSV 1127
              S+++
Sbjct: 1030 ISSMAI 1035


>gi|13274162|emb|CAC33859.1| RNA polymerase II largest subunit [Nosema tyriae]
          Length = 986

 Score =  809 bits (2090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/1071 (42%), Positives = 634/1071 (59%), Gaps = 146/1071 (13%)

Query: 81   GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDA 140
            GH+EL+KPMFH+G++  +  I+  +CF CS++               +N K  L  I   
Sbjct: 1    GHIELSKPMFHVGYISKIKKILECICFYCSRLKVSR-----------KNLKADLNAIWAV 49

Query: 141  CKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
             K K  CEG            E  ++   GCG +QP +  EG+ ++A  K +        
Sbjct: 50   SKGKMVCEG------------ELTEEGFNGCGNKQPVIKKEGLNLVAFMKGE-------- 89

Query: 201  QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS- 259
               +  E K  L  E+V  + K+ISDED ++LG +  Y+ P+W+IL VL +PPP VRPS 
Sbjct: 90   ---DNSEGKVILNGEKVHSIFKKISDEDIEVLGFDLAYSTPEWLILTVLLVPPPSVRPSI 146

Query: 260  ---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPG 310
                     DDLTH+L+ II+ N  L++ E  GAP HII ++ QLLQFH+AT  DN++ G
Sbjct: 147  VMEGMLRAEDDLTHKLSDIIKSNTYLKKYEMEGAPGHIIRDYEQLLQFHVATLIDNDISG 206

Query: 311  QPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSI 370
            QP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSAR+VIT D  I+++++GVP  +
Sbjct: 207  QPQALQKSGRPLKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPLEV 266

Query: 371  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 430
            A   T+PE +TP+NIE+L++LV  GP+  PG   A Y+IR DGQR+DL +          
Sbjct: 267  AKIHTFPEKITPFNIEKLEKLVANGPNECPG---ANYVIRTDGQRIDLNF---------- 313

Query: 431  LGYKVERHLNDGDF----VLFNRQPSLHKMSIMGHRIKIMPY------------STFRLN 474
                     N GD     V+  R     +M I+ + I  + +              FRL 
Sbjct: 314  ---------NRGDIKLEEVILLRDTC--RMEILFYLIDDLLFINVYDGHSSCDEEDFRL- 361

Query: 475  LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
            +     YNADFDGDEMN+H+PQ++ + AE+ E+ MVPK I+ PQSN+PVMGIVQDTL G 
Sbjct: 362  IECHFSYNADFDGDEMNLHMPQNYNSIAELEEICMVPKQILGPQSNKPVMGIVQDTLTGL 421

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFD---------------------------GKVPQPT 567
            R  T RD F +K+  M +L +  DF+                           G + +P 
Sbjct: 422  RFFTVRDAFFDKNEMMQVL-YSIDFEKYYDIGLDSVIKKGKKLDMGAKEYSLMGLLSKPA 480

Query: 568  ILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCK 627
            I KP+ LWTGKQ+ + I P   N++   + +   +  +    DT V I  GE++SG + K
Sbjct: 481  IQKPKQLWTGKQILSFIFP---NVYYKNSSNESRENDLENVSDTSVVICGGEIMSGIIDK 537

Query: 628  KTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ-NAFSIGIGDTIADAKTMET 686
            K +G + G L+H+I  + G      F+   Q ++  +L+  +  S+GIGDT+AD+ T++ 
Sbjct: 538  KAVGATQGGLVHIIANDFGCSRVTLFIDDIQKIITKFLMNIHVSSMGIGDTVADSDTLKY 597

Query: 687  INDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLS 746
            +   I K+K++V  +I++AQ+  L+  PG TM ESFE++VN VLN ARD +G+S QKSL+
Sbjct: 598  VKQAIEKSKDSVDEIIRKAQNNRLDRLPGMTMKESFESQVNYVLNKARDVSGTSTQKSLN 657

Query: 747  ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRG 806
            + NN+KAMV +GSKGSFINISQ+TACVGQQNVEGKRIPFGF  RTLPHF K+DY  +SRG
Sbjct: 658  KCNNMKAMVLSGSKGSFINISQVTACVGQQNVEGKRIPFGFAYRTLPHFPKEDYSGKSRG 717

Query: 807  FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRN 866
            FVENSYL GL+P+EFFFHAMGGREGLIDTA+KT+ETGYIQRRLVKAMED  V+ DG+VR 
Sbjct: 718  FVENSYLSGLSPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKAMEDATVRLDGSVRG 777

Query: 867  SLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD---EENWNPNYMLQEY 923
            + G+V Q+LYGEDG D+ ++E Q + +   K++ F   F  ++    ++    + + +  
Sbjct: 778  ATGNVYQYLYGEDGFDATFLEMQRVQTTNFKEAHFIDMFSTDLTYAVKKGAVSDQIYKLL 837

Query: 924  IDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSW----PLPVNLKRLIWNAQKT 979
              D++  K L D +D  V+ +  D Y    E     +  +      P NL+R+I+NA   
Sbjct: 838  CSDIELQKILYDEYDWLVKHV-FDSYNPEDESQNVVNRLYRNVLASPCNLQRIIYNAISM 896

Query: 980  FKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKR 1039
            F+  P    D+ P  ++E    L        G + L            N+L+R+  + K 
Sbjct: 897  FQ-SP--VGDVSPYFILETTKDL-------GGTNEL-----------LNVLIRTHLSVKN 935

Query: 1040 VLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1090
            +L  ++L    F WVI  I+ + + S VA  EM+G +AAQS+GEPATQMTL
Sbjct: 936  ILTVYKLDLNGFNWVIEAIKDKVMSSRVAHNEMVGTLAAQSVGEPATQMTL 986


>gi|327242117|gb|AEA40837.1| RNA polymerase II largest subunit [Trichomonas sp. RWG-2007-1]
          Length = 998

 Score =  809 bits (2090), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/1019 (42%), Positives = 615/1019 (60%), Gaps = 55/1019 (5%)

Query: 101  IMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKT--KCEGGDE------ 152
            +++ VC +C ++L +  D + +  ++    KNR  K+ +   NK   KC  G++      
Sbjct: 1    LLQMVCHSCGRVLCNYSDPEIQFIVRHYKGKNRFLKLFEKISNKQCQKCSSGEDKNSNKD 60

Query: 153  ---------IDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLP 203
                      ++   D      + K  C +  P +  +G   + +YK      DD     
Sbjct: 61   MDCVSDDRFWEIVNGDAHSDHVRIKKPCESTVPAVE-QGKHFLIKYKDSSANEDD----- 114

Query: 204  EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS---- 259
                    + AE+VL + + ISD+D +LLG N K + P W+I+++LP+PP  VRP     
Sbjct: 115  -------YIPAEKVLRIFENISDQDVRLLGFNVKRSHPKWLIIKILPVPPLAVRPQVVSP 167

Query: 260  -------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQP 312
                   DD+TH+L+ II+ N  L + +   +    + E  QLLQ+HI TY  N+ P   
Sbjct: 168  GQSVPSQDDVTHKLSDIIQVNNKLTQLKNESSTDTAMKEVRQLLQYHITTYLCNDKPSID 227

Query: 313  RATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIAL 372
            RA  ++GRP+K I  RLK KEG +RG+L GKR DFSAR+VI+PDP+I+IDQ+GVP  +A 
Sbjct: 228  RAQTKNGRPLKVISQRLKGKEGHLRGHLSGKRDDFSARSVISPDPSISIDQVGVPEQLAK 287

Query: 373  NLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELG 432
             LT+PE VTP N + L+ +V+ G        GA Y+I D G R DL          L  G
Sbjct: 288  ILTFPEVVTPINQKWLESIVQKGADSI---GGANYVINDRGTRTDLSLCHDIMQVTLSNG 344

Query: 433  YKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNM 492
            Y VERHL D D V+FNRQPSLHKMS+MGHR  IM   TFRLNL  T+PYNADFDGDEMN+
Sbjct: 345  YIVERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLNLCDTTPYNADFDGDEMNL 404

Query: 493  HVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNI 552
            HVPQS   R EV  +M VPK I+SPQ+N+PV+G+VQD LLGCR ++KRDTF+ ++  MN+
Sbjct: 405  HVPQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFLTRNQVMNL 464

Query: 553  LMWW-EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDT 611
            +MW     D  +P P ILKP  LW+GKQVF+L +PK I+    +    D DK  L   D 
Sbjct: 465  MMWLPSTKDTNLPPPCILKPVQLWSGKQVFSLFLPK-ISHDSLSQDATDADKNSLPLNDR 523

Query: 612  LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
             V I  G LL+G L K+T+  S GSLIHV+      + A+ FL  TQ +VN WL    FS
Sbjct: 524  HVIIRDGNLLAGILDKRTVARSEGSLIHVVINSYNTNIAKDFLNQTQLIVNNWLEHRGFS 583

Query: 672  IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
            IG+ D +  +  +E + D I+K  N VK+ I +A+   LE  PG + M+SFE +VN  LN
Sbjct: 584  IGLIDCVVPSFVLEKVQDEITKVDNAVKDTILKAKQGKLERMPGMSYMQSFETEVNNYLN 643

Query: 732  TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
               +       + +   N+LK M++AGSKG+  NISQ+   VGQQN+EGKR+ FGF  RT
Sbjct: 644  EILNTTYKVINEKIRPDNSLKEMLSAGSKGADSNISQIIGVVGQQNMEGKRVKFGFSGRT 703

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPH+ K +YG   RGF  NSY+ GLTP EF FHAMGGR G+IDTA KTS+TGYIQRRL K
Sbjct: 704  LPHYQKHEYGLVPRGFCVNSYIAGLTPPEFLFHAMGGRTGIIDTACKTSDTGYIQRRLCK 763

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE 911
            +ME   V YDGTVRNS  +V+QF+YG DG+D+  +E+Q L  + +    F+K +   +D+
Sbjct: 764  SMESHHVAYDGTVRNSQNEVVQFIYGGDGLDATGLETQRLGLVGLDDKAFNKLYHLNVDD 823

Query: 912  ENWNPNYM----LQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPV 967
              +  + M    L++++  +   K+L++    E  +L+  R  L  EI   G  +  LPV
Sbjct: 824  PTFGQDAMDANVLEDFLRSMDKDKKLQE----EEHRLKEFREILQHEIFPDGSDTVVLPV 879

Query: 968  NLKRLIWNAQKTFKVDPR-RPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
            N+ R+I ++Q+ F ++     SD++P++++  V+     L +V G D +S  AQ NATL 
Sbjct: 880  NIARIIESSQRQFDINVHVSKSDLNPLDIIARVEDCVNSLIIVKGNDTISRRAQDNATLL 939

Query: 1027 FNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPA 1085
              I+L S  ++K+ + ++RL  +AF++++G ++ RF +S+ APGEM+G +A QSIGEP+
Sbjct: 940  LRIMLFSHLSAKQCIFKYRLNEQAFKYILGSVKDRFYRSICAPGEMVGTIAGQSIGEPS 998


>gi|197723718|gb|ACH72769.1| RNA polymerase II largest subunit [Kabatana sp. JI-2008]
          Length = 909

 Score =  808 bits (2086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/841 (50%), Positives = 562/841 (66%), Gaps = 79/841 (9%)

Query: 92  IGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGD 151
           IGF+  +  ++ +VCF CS+I       K   + K R P  +L  + +ACK KT C    
Sbjct: 1   IGFLAKIKKLLETVCFYCSRIKIGNAAQK---SAKYRTPHTKLNGLWNACKTKTIC---- 53

Query: 152 EIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT 211
                G+  EE       GCG +QP +  EG+ ++A  K      DD        E +  
Sbjct: 54  -----GEKTEEST-----GCGNRQPLIKKEGLNLVAFMK------DD--------EGRVI 89

Query: 212 LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPP----------VRPSDD 261
           LT E+V  +LKRISD D + LG  P  +RP+WM+L VL +PPPP          +R  DD
Sbjct: 90  LTGEKVHSILKRISDADLESLGFEPTISRPEWMVLTVLLVPPPPVRPSVVMDGVLRGEDD 149

Query: 262 LTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 321
           LTH+LA I++ N NLRR ER GAPAH++ ++ QLLQFH+AT  DNE+ GQP+A Q+SG P
Sbjct: 150 LTHKLADIVKANNNLRRYEREGAPAHVVRDYEQLLQFHVATLMDNEISGQPQAVQKSGGP 209

Query: 322 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 381
           +KSI +RLK KEGR+RGNLMGKRVDFSAR+VITPD  I+I +LGVP  IA+  T+PETV 
Sbjct: 210 LKSISARLKGKEGRVRGNLMGKRVDFSARSVITPDSNISICELGVPKRIAMIHTFPETVN 269

Query: 382 PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 441
            +N+E++++LV+ GP   P   GA Y++R+DGQR+DLRY +  S   ++ G  VERH+ D
Sbjct: 270 SFNVEKMEQLVKSGPFEYP---GANYVVREDGQRVDLRYNRNVS---IKEGCVVERHMAD 323

Query: 442 GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 501
           GD VLFNRQPSLHKMS+M HR+++M   TFRLNLS T+PYNADFDGDEMN+H+PQS++T 
Sbjct: 324 GDTVLFNRQPSLHKMSMMAHRVRVMDRLTFRLNLSATTPYNADFDGDEMNLHMPQSYQTM 383

Query: 502 AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 561
           AE+ EL  +P  IVSPQ N+PVMG+VQDTL+G R++T RD+F  +   M ++   ++   
Sbjct: 384 AELKELAFLPTQIVSPQGNKPVMGLVQDTLIGVRRLTSRDSFFNEQEVMALMFKCQNV-- 441

Query: 562 KVPQPTILKPRPLWTGKQVFNLIIPKQINLF-------------RTAAWHADND------ 602
           K  +P I +P  L++GKQ+F+L +P +IN               +   W+  ++      
Sbjct: 442 KKLKPVIKRPLRLYSGKQLFSLNLP-EINFHGVTNDPDFGDSIEKLDGWNLGSESKSKQQ 500

Query: 603 ------KGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGH 656
                 K IL   D+ V I +G+LL G + KK++G + G +IHVI  + G ++   F   
Sbjct: 501 EMYSLHKRIL---DSKVVIRRGQLLLGAMDKKSVGNTQGGIIHVIKNDHGCESVVNFFDG 557

Query: 657 TQWLVNYWL-LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPG 715
           TQ LVN +L   ++FS GIGDTIAD+ TM  I  +I  AK  V  +I+ A+   LE   G
Sbjct: 558 TQRLVNAYLTFYSSFSCGIGDTIADSYTMRKIVSSIEGAKKEVGEIIESARQGRLERVAG 617

Query: 716 RTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQ 775
            TM  +FE+K+N  LN ARD +G SAQ+SL+ SNN+K MV AGSKGSFINISQ+TACVGQ
Sbjct: 618 LTMKSTFESKINLALNRARDVSGRSAQESLAVSNNVKQMVLAGSKGSFINISQVTACVGQ 677

Query: 776 QNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDT 835
           QNVEG+RIPF F DRTLPHF+K DYGPESRGFVENS+L GLTP+EF+FH MGGREGLIDT
Sbjct: 678 QNVEGQRIPFAFRDRTLPHFSKFDYGPESRGFVENSFLSGLTPEEFYFHTMGGREGLIDT 737

Query: 836 AVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLK 895
           A+KT+ETGYIQRRLVKAMED  V YDG+VR+  G   QFLYG DG D+ ++E   LD  +
Sbjct: 738 AIKTAETGYIQRRLVKAMEDCRVSYDGSVRDGSGRAYQFLYGGDGFDATFLEHNFLDDRR 797

Query: 896 M 896
           +
Sbjct: 798 V 798


>gi|83320474|gb|ABC02864.1| RNA polymerase II largest subunit, partial [Olpidium brassicae]
          Length = 585

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/588 (65%), Positives = 467/588 (79%), Gaps = 14/588 (2%)

Query: 246 LQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
           + VL +PPPPVRPS          DDLTH+L+ I++ N N++R E  GAPAH+I EF  L
Sbjct: 1   VTVLAVPPPPVRPSIQMDGTSRGEDDLTHKLSDILKANANVKRCETEGAPAHVIEEFESL 60

Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
           LQFH+ATY +NEL GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT 
Sbjct: 61  LQFHVATYMNNELAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITG 120

Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
           DP ++ID++GVP SIA NLT+PE VTPYNI+R++ELV  GP+  PG   AK++IRD G+R
Sbjct: 121 DPNLSIDEVGVPRSIARNLTFPEIVTPYNIDRMQELVRNGPNEHPG---AKFVIRDTGER 177

Query: 416 LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
           +DLRY K+S D  L++G+KVERHL DGD ++FNRQPSLHKMS+MGH++++MPYSTFRLNL
Sbjct: 178 IDLRYHKRSGDIPLQVGWKVERHLVDGDVIIFNRQPSLHKMSMMGHKVRVMPYSTFRLNL 237

Query: 476 SVT-SPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
           SV+ SPYNADFDGDEMNMHVPQS E RAE+ E+ MVPK IV+P +N+P MGIVQDTL G 
Sbjct: 238 SVSPSPYNADFDGDEMNMHVPQSIEARAEINEICMVPKQIVAPAANKPCMGIVQDTLCGV 297

Query: 535 RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
           RK+TKRD F++K   MN++MW  ++DG +P P I KP+PLWTGKQ+F+L IPK INL   
Sbjct: 298 RKMTKRDVFLDKAFVMNVVMWIPNWDGNLPVPAIFKPKPLWTGKQIFSLTIPKGINLQAF 357

Query: 595 AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
            + H DN+   ++ GDT V IE G++L+G +CKKT+G S G LIHVIW+E GP+  + F 
Sbjct: 358 HSTHPDNEHTDISPGDTKVIIENGDVLAGIICKKTVGASPGGLIHVIWQEKGPEVCKAFF 417

Query: 655 GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
              Q +VN WLLQ+ FSIGIGDTIAD KTM+ I  TI+ AK  V+ +I QAQ   L P P
Sbjct: 418 NGVQAIVNNWLLQHGFSIGIGDTIADDKTMQHITTTINTAKARVQEIILQAQQDKLLPMP 477

Query: 715 GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
           G T+ ESFEN+VN+ LNTARD AGSSAQ SL E NN+K MV AGSKGSFINISQM+ACVG
Sbjct: 478 GMTIRESFENQVNRELNTARDTAGSSAQNSLREDNNVKQMVVAGSKGSFINISQMSACVG 537

Query: 775 QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
           QQNVEGKRIPFGF  RTLPHF+KDD+ PESRGFVENSYLRGLTPQEFF
Sbjct: 538 QQNVEGKRIPFGFKYRTLPHFSKDDHSPESRGFVENSYLRGLTPQEFF 585


>gi|327242131|gb|AEA40844.1| RNA polymerase II largest subunit [Trichomonas vaginalis]
          Length = 1006

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/1028 (42%), Positives = 615/1028 (59%), Gaps = 56/1028 (5%)

Query: 93   GFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKT-KCEGGD 151
            GF+     +++ VC  C ++L    D + +  +     KNR  K+ +   +K+ KC+   
Sbjct: 1    GFLPHCYKLLQMVCHKCGRVLCSYSDPEIQYIVTHYKGKNRFLKLFEKIASKSGKCQHSP 60

Query: 152  EIDVPGQ---------------DGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
            ++  P +               D      + K  C A  P +  +G   + + K   K  
Sbjct: 61   DLKNPNEPDVCLDERFWELVNGDSHSEHVRVKKPCNAAVPAIE-QGKDFLIKLKDVSKTE 119

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
            +D             L+AE VL + + ISD+D +LLG NPK + P WMIL++LP+PP  V
Sbjct: 120  ED------------YLSAEVVLRIFENISDQDVRLLGFNPKRSHPKWMILKILPVPPLAV 167

Query: 257  RPS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFD 305
            RP            DD+TH+L+ II  N+ LR Q    +    + E   LLQ+HI TY  
Sbjct: 168  RPQVVSPGQSAPSQDDITHKLSDIIICNKRLRAQRSESSTDTAMKETRTLLQYHITTYMI 227

Query: 306  NELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLG 365
            N+ P   RA  +SGRP+K I  RLK KEG +RG+L GKR D+SAR+VI+PDP+I+IDQ+G
Sbjct: 228  NDKPSIERAVTKSGRPLKVISQRLKGKEGHLRGHLSGKRDDYSARSVISPDPSISIDQVG 287

Query: 366  VPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSS 425
            VP  +A  LT+PE VTP N + L+ +V  G H   G  GA ++I D G R DL      S
Sbjct: 288  VPEQLAKILTFPEVVTPTNQKWLESIVMKG-HDDLG--GANFVINDHGTRTDLSCCTDLS 344

Query: 426  DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADF 485
               L  GY VERHL D D V+FNRQPSLHKMS+MGHR  IM   TFRLNL  T+PYNADF
Sbjct: 345  TITLSPGYIVERHLRDDDIVIFNRQPSLHKMSMMGHRALIMSGRTFRLNLCDTTPYNADF 404

Query: 486  DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
            DGDEMN+HVPQS   R EV  +M VPK I+SPQ+N+PV+G+VQD LLGCR ++KRDTF+ 
Sbjct: 405  DGDEMNLHVPQSQTARTEVRHIMAVPKQIISPQANKPVIGLVQDALLGCRLLSKRDTFLT 464

Query: 546  KDVFMNILMWW-EDFDGKVPQPTILKPRPLWTGKQVFNLIIPK-QINLFRTAAWHADNDK 603
            ++  MN++MW     D  +P P ILKP  LW+GKQVF+L +PK   N +   A   D + 
Sbjct: 465  RNQVMNLMMWLPTTKDTILPPPCILKPVQLWSGKQVFSLFLPKISHNSYSQDANKMDQNS 524

Query: 604  GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
              +   D  V I  G LL+G L KKT+  S GSLIHV+      + A+ FL  TQ +VN 
Sbjct: 525  --IPLADRHVIIRDGNLLAGILDKKTVARSEGSLIHVVINSYNTNIAKDFLNQTQLIVNN 582

Query: 664  WLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE 723
            WL    FSIG+ D +     ++ +   I   ++ V+  I +AQD  LE  PG + M+SFE
Sbjct: 583  WLEHRGFSIGLIDCVVPDFVLQEVKHEIDDVESKVQATIIKAQDGQLERMPGMSYMQSFE 642

Query: 724  NKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRI 783
             +VN + N    +        +   N+L  M++AGSKG+  N+SQ+   VGQQN+EGKR+
Sbjct: 643  TEVNNLTNEILSKTYKVINAKIRRDNSLSEMLSAGSKGADTNMSQIIGVVGQQNMEGKRV 702

Query: 784  PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
             FGF  RTLPHF K +YG   RGF +NSY+ GLTP EF FHAMGGR G+IDTA KTS+TG
Sbjct: 703  KFGFNGRTLPHFQKHEYGLVERGFCKNSYIAGLTPPEFLFHAMGGRTGIIDTACKTSDTG 762

Query: 844  YIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDK 903
            YIQRRLVK+ME   V YDGTVRNS  +++QF+YG DG+D+  +E+Q L  + +   +F K
Sbjct: 763  YIQRRLVKSMESHHVAYDGTVRNSQNEIVQFIYGGDGLDATGLETQRLALVTLNDEDFMK 822

Query: 904  AFRFEMDEENWNP----NYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSG 959
             +    ++  +      +++L E++      K L++    E  +L   R  L  EI  +G
Sbjct: 823  KYHLATEDPTFGQVEMDDFVLDEFLKTPNKDKFLKE----EENRLREYREILQKEIFPNG 878

Query: 960  DSSWPLPVNLKRLIWNAQKTFKVDPR-RPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVE 1018
             ++  +PVN+ R+I ++Q+ F ++     SD++P++++  VD+    L VV G D +S  
Sbjct: 879  SNTVVVPVNIARIIESSQRQFDINVHVSKSDLNPLDIISRVDECVNSLIVVKGNDNISRT 938

Query: 1019 AQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAA 1078
             Q+NATL   I+L S  ++K+ + E+RL  +AF++++G I+ RF +S+VAPGEM+G +A 
Sbjct: 939  EQENATLLLRIMLYSHLSAKQCIFEYRLNEQAFKYILGSIKDRFYRSIVAPGEMVGTIAG 998

Query: 1079 QSIGEPAT 1086
            QSIGEP+T
Sbjct: 999  QSIGEPST 1006


>gi|83320462|gb|ABC02858.1| RNA polymerase II largest subunit, partial [Rhizophagus
           intraradices]
          Length = 585

 Score =  803 bits (2073), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 383/568 (67%), Positives = 462/568 (81%), Gaps = 6/568 (1%)

Query: 257 RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQ 316
           R  DDLTH+L+ I++ N+NLRR E +G+PAH++SEF  LLQFH ATY DNE+ GQP+A Q
Sbjct: 22  RGEDDLTHKLSDILKANQNLRRYESDGSPAHVVSEFEALLQFHCATYMDNEMAGQPQALQ 81

Query: 317 RSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTY 376
           +SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP I++D++GVP SIA NLT+
Sbjct: 82  KSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTF 141

Query: 377 PETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVE 436
           PE VTP+N++ L+ELV+ GP   PG   AKY+IRD G+R+DL++   ++   L+ G+KVE
Sbjct: 142 PEIVTPFNVDLLQELVKNGPSVHPG---AKYVIRDTGERIDLKHTSGTNVVRLQNGWKVE 198

Query: 437 RHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 496
           RH+N+GD ++FNRQPSLHKMS+MGH++++MP+STFRLNL VTSPYNADFDGDEMNMH+PQ
Sbjct: 199 RHINNGDIIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLFVTSPYNADFDGDEMNMHIPQ 258

Query: 497 SFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW 556
           S ET+AE+ E+ MVPK IVSPQSN+PVMGIVQDTL G RK TKRDTF+ KD+ MNILMW 
Sbjct: 259 SVETKAEIREICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTKRDTFLSKDLVMNILMWV 318

Query: 557 EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL--FRTAAWHADNDKGILTAGDTLVR 614
           +D+DGK+P P ILKP PLWTGKQ+ ++IIPK IN    R +  H D +   ++ GDT V 
Sbjct: 319 KDWDGKIPTPCILKPIPLWTGKQILSMIIPKGINSDNLRHST-HPDGEFTDISPGDTKVL 377

Query: 615 IEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGI 674
           IE GELL G +CKKT+GT+   LIHVI +E+GP+ A+ FL   Q +VNYWLLQN FSIGI
Sbjct: 378 IEDGELLCGIICKKTVGTAQQGLIHVIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGI 437

Query: 675 GDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR 734
           GDTIAD  TME+I  TI+ AK  V  +I  AQ  +LE +PG T+ ESFENKVN+ LNTAR
Sbjct: 438 GDTIADKDTMESITQTINSAKERVAEVIIAAQQNNLECQPGMTIRESFENKVNKELNTAR 497

Query: 735 DEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPH 794
           D AG SA+KSLSE NN+K MV AGSKGSFINISQMTACVGQQNVEGKRIPFGF  RTLPH
Sbjct: 498 DSAGRSAEKSLSEDNNVKQMVIAGSKGSFINISQMTACVGQQNVEGKRIPFGFKFRTLPH 557

Query: 795 FTKDDYGPESRGFVENSYLRGLTPQEFF 822
           FTKDD+ PESRGFVENSYLRGLTPQEFF
Sbjct: 558 FTKDDHTPESRGFVENSYLRGLTPQEFF 585


>gi|83320440|gb|ABC02847.1| RNA polymerase II largest subunit, partial [Funneliformis mosseae]
          Length = 585

 Score =  798 bits (2061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/568 (67%), Positives = 459/568 (80%), Gaps = 6/568 (1%)

Query: 257 RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQ 316
           R  DDLTH+LA I++ N+NLRR E +G+PAH++SEF  LLQFH ATY DNE+ GQP+A Q
Sbjct: 22  RGEDDLTHKLADILKANQNLRRYESDGSPAHVVSEFESLLQFHCATYMDNEMAGQPQALQ 81

Query: 317 RSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTY 376
           +SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP I++D++GVP SIA NLT+
Sbjct: 82  KSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNISVDEVGVPKSIASNLTF 141

Query: 377 PETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVE 436
           PE VTP+N++ L+ELV+ GP   PG   AKY+IRD G+R+DL++   ++   L+ G+KVE
Sbjct: 142 PEIVTPFNVDLLQELVKNGPTVHPG---AKYVIRDTGERIDLKHTSGTNVVRLQNGWKVE 198

Query: 437 RHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 496
           RH+N+GD ++FNRQPSLHKMS+MGH++++MP+STFRLNLSVTSPYNADFDGDEMNMHVPQ
Sbjct: 199 RHINNGDVIIFNRQPSLHKMSMMGHKVRVMPFSTFRLNLSVTSPYNADFDGDEMNMHVPQ 258

Query: 497 SFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW 556
           S ET+AE+ E+ MVPK IVSPQSN+PVMGIVQDTL   RK TKRD F  KD+ MNILMW 
Sbjct: 259 SVETKAEIKEICMVPKQIVSPQSNKPVMGIVQDTLCAIRKFTKRDCFXSKDLVMNILMWV 318

Query: 557 EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL--FRTAAWHADNDKGILTAGDTLVR 614
           +D+DGK+P P ILKP PLWTGKQ+ ++IIPK IN    R +  H D +   ++ GDT V 
Sbjct: 319 KDWDGKIPIPCILKPIPLWTGKQILSMIIPKGINSDNLRHST-HPDGENTDMSPGDTKVL 377

Query: 615 IEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGI 674
           IE GELL G +CKKT+GT+   LIHVI +E+GP+ A+ FL   Q +VNYWLLQN FSIGI
Sbjct: 378 IEDGELLCGIVCKKTVGTAQQGLIHVIMQELGPNRAKDFLNGCQAVVNYWLLQNGFSIGI 437

Query: 675 GDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR 734
           GDTIAD  TM++I  TI+ AK  VK +I  AQ   LE +PG T+ ESFEN+VN+ LNTAR
Sbjct: 438 GDTIADKDTMDSITQTINNAKERVKEVILSAQQNKLECQPGMTIRESFENQVNKELNTAR 497

Query: 735 DEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPH 794
           D AG SA+KSLSE NN+K MV AGSKGSFINISQMTACVGQQNVEGKRIP+GF  RTLPH
Sbjct: 498 DSAGRSAEKSLSEDNNVKQMVIAGSKGSFINISQMTACVGQQNVEGKRIPYGFKFRTLPH 557

Query: 795 FTKDDYGPESRGFVENSYLRGLTPQEFF 822
           FTKDD+ PESRGFVENSYLRGLTP EFF
Sbjct: 558 FTKDDHSPESRGFVENSYLRGLTPXEFF 585


>gi|343172362|gb|AEL98885.1| DNA-directed RNA polymerase II subunit, partial [Silene latifolia]
 gi|343172364|gb|AEL98886.1| DNA-directed RNA polymerase II subunit, partial [Silene latifolia]
          Length = 408

 Score =  797 bits (2059), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/408 (92%), Positives = 386/408 (94%)

Query: 273 NENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAK 332
           N+NLRRQERNGAPAHIISEFAQLLQFHIATY      G   ATQRSGRPIKSICSRLKAK
Sbjct: 1   NDNLRRQERNGAPAHIISEFAQLLQFHIATYLIMSYLGSQGATQRSGRPIKSICSRLKAK 60

Query: 333 EGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELV 392
           EGRIRGNLMGKRVDFSARTVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELV
Sbjct: 61  EGRIRGNLMGKRVDFSARTVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELV 120

Query: 393 EYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPS 452
           +YGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPS
Sbjct: 121 DYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPS 180

Query: 453 LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPK 512
           LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPK
Sbjct: 181 LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPK 240

Query: 513 CIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPR 572
           CIVSPQ+N+PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQP+ILKPR
Sbjct: 241 CIVSPQANKPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPSILKPR 300

Query: 573 PLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGT 632
           P+WTGKQVFNLIIPKQINL R AAWH + + G LT GDT V IE+GELL+GTLCKKTLGT
Sbjct: 301 PIWTGKQVFNLIIPKQINLVRFAAWHQETETGHLTPGDTRVLIERGELLAGTLCKKTLGT 360

Query: 633 STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIAD 680
             GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN FSIGIGDTIAD
Sbjct: 361 GGGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNGFSIGIGDTIAD 408


>gi|31127038|gb|AAF26658.2|AF139008_1 RNA polymerase II largest subunit [Speleonectes tulumensis]
          Length = 636

 Score =  797 bits (2058), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/640 (60%), Positives = 487/640 (76%), Gaps = 8/640 (1%)

Query: 336 IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 395
           IRGNLMGKRVDFSARTVITPDP + IDQ+GVP S+A NLT+PE VTP+NI++++ELV  G
Sbjct: 1   IRGNLMGKRVDFSARTVITPDPNLRIDQVGVPRSVAQNLTFPEIVTPFNIDKMQELVRRG 60

Query: 396 PHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHK 455
               PG   AKYIIRD+G+R+DLRY  K SD HL+ GYKVERH+ DGD V+FNRQP+LHK
Sbjct: 61  NAQYPG---AKYIIRDNGERIDLRYHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHK 117

Query: 456 MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 515
           MS+MGHR+K++P+STFR+NLSVT+PYNADFDGDEMN+HVPQS ETRAE+  + + P+ I+
Sbjct: 118 MSMMGHRVKVLPWSTFRMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIENIHVTPRQII 177

Query: 516 SPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLW 575
           +PQ+N+PVMGIVQDTL   RK+TKRD F+EKD  MN+LM+   +DGK+PQP ILKP+PLW
Sbjct: 178 TPQANKPVMGIVQDTLCAVRKMTKRDVFLEKDQMMNLLMFLPIWDGKMPQPAILKPKPLW 237

Query: 576 TGKQVFNLIIPKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLG 631
           TGKQ+F+LIIP  +N+ RT + H D  D G    ++ GDT V +E GEL+ G +CKKTLG
Sbjct: 238 TGKQLFSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGIMCKKTLG 297

Query: 632 TSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTI 691
           TS GSL+H+   E+G +    F G+ Q ++N WLL    SIGIGDTIAD +T   I +TI
Sbjct: 298 TSAGSLLHICMLELGHEVCGHFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLDIQNTI 357

Query: 692 SKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNL 751
            KAK +V ++I +A +  LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNL
Sbjct: 358 KKAKEDVIDVIHKAHNDELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNL 417

Query: 752 KAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENS 811
           KAMV AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENS
Sbjct: 418 KAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENS 477

Query: 812 YLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 871
           YL GLTP EF+FHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +
Sbjct: 478 YLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQL 537

Query: 872 IQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIK 931
           IQ  YGEDG+    +E Q+L ++K+    F+K ++F+   E +      ++ + +L    
Sbjct: 538 IQLRYGEDGLCGETVEFQSLPTVKLSNKAFEKKYKFDATNERYLRRVFNEDIMKELMGSG 597

Query: 932 ELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
           E+    + E ++L  DR  L   I    ++   LP NL+R
Sbjct: 598 EVISELEKEWEQLNKDRDTLRM-IFPLAENKVVLPCNLQR 636


>gi|261330838|emb|CBH13823.1| RNA polymerase IIA largest subunit, (fragment) [Trypanosoma brucei
           gambiense DAL972]
          Length = 948

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/972 (43%), Positives = 595/972 (61%), Gaps = 58/972 (5%)

Query: 5   FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
            P S  E+ KV  VQF I    +I+  +V  +EH ++ ERG+P  GG++D R+GT D + 
Sbjct: 7   LPVSQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYERGRPVRGGINDLRMGTTDFEF 66

Query: 65  KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
            CETC     ECPGHFG++ELA+P+F+IG    VL +++ VC  C  +L +  +    + 
Sbjct: 67  ACETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHKK 126

Query: 125 LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKG---------GCGAQQ 175
           L+     NRL+++    + K +     E D+ G DG +    N G         GCGA Q
Sbjct: 127 LQHMTGLNRLRQVAKMAEAKCRVSTSTEDDM-GIDGFDSAPFNGGSGMGPGATRGCGASQ 185

Query: 176 PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
           P+++    +    Y     K   +EQ  E         A++V  VL R+SD+D +L+G +
Sbjct: 186 PRVS----RFYGIYPTLVIKAVHEEQDAE-------WHADKVRQVLDRVSDDDARLMGFD 234

Query: 236 PKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPA 286
           P+   P  ++L VLP+PPP VRP+         D+LTHQ+  I++ N  LRR + +   A
Sbjct: 235 PQRCHPRDLVLTVLPVPPPQVRPAISFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQA 294

Query: 287 HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            I    A LLQ H+ATYF+N             + +KS+  RLK K GR+RGNLMGKRVD
Sbjct: 295 AIDRSRA-LLQEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVD 353

Query: 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
           FSARTVIT DP I++D++GVP+S+A+ LT+PE V   N +RL E      +P      A 
Sbjct: 354 FSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFARRTVYPS-----AN 408

Query: 407 YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
           YI   +G    L  L+  S   L +G  VERH+ +GD VLFNRQP+LH+MS+MGHR++++
Sbjct: 409 YIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRVL 468

Query: 467 PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
            Y+TFRLNLS T+PYNADFDGDEMN+HVPQS  T+AE++E+MMVPK  VSP  + P MGI
Sbjct: 469 NYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMGI 528

Query: 527 VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
           VQD+LLG  ++T +DTF++K    ++ +W + +  ++P P ILKPRPLWTGKQVF+LI+P
Sbjct: 529 VQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLW--QLPIPAILKPRPLWTGKQVFSLILP 586

Query: 587 KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
            ++N   T       D+      D++V I +G+LL G + K  +G + GSLIHVI+ E G
Sbjct: 587 -EVNHPATP-----QDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEHG 640

Query: 647 PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
            D   +F+   Q +  ++LL   FS+G+ DT+AD+ T+  +ND + K + NV+ +   A 
Sbjct: 641 SDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAAN 700

Query: 707 DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
           +++L  + G T+++SFE  VN  LN  R+EA   A  ++  +N+ K M+ AGSKG+ +NI
Sbjct: 701 NRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLNI 760

Query: 767 SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
            Q+   VGQQNV G RIPFGF  RTLPHF  DDYG  SRG     Y+ GL P EFFFH M
Sbjct: 761 CQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHTM 820

Query: 827 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
            GREGLIDTAVKTS+TGY+QR+L+KA+ED+   YDGTVRN+  ++IQF+YGEDG+D   I
Sbjct: 821 AGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGARI 880

Query: 887 ESQTLDSLKMK-KSEFDKAFRFEMDEENWNPNYMLQEYID---------DLKTIKELRDV 936
           E   L  L  +   E +  +++E D +      +   Y+D         D + +++L++ 
Sbjct: 881 EGGQLFPLPFRDDKEMEDTYKYEYDVDGTFSGKVGGNYMDPHVRKMLRADPQNVRKLQE- 939

Query: 937 FDAEVQKLEADR 948
              E ++L ADR
Sbjct: 940 ---EYEQLTADR 948


>gi|216296571|gb|ACJ72070.1| RNA polymerase II largest subunit [Trichoplax adhaerens]
          Length = 625

 Score =  793 bits (2047), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/626 (61%), Positives = 482/626 (76%), Gaps = 5/626 (0%)

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            ++I+P+STFRLNLSVT+PYNADFDGDEMN+HVPQS E+RAE+ E+ MVP+ IV+PQSN+P
Sbjct: 1    VRILPWSTFRLNLSVTTPYNADFDGDEMNLHVPQSLESRAEITEICMVPRQIVTPQSNKP 60

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFN 582
            VMGIVQD+L   RK T RD F+EK+V MN+LMW  +++GK+PQP IL+P+ LWTGKQ+F+
Sbjct: 61   VMGIVQDSLTAVRKFTMRDVFLEKEVVMNLLMWLPNWNGKMPQPAILRPKELWTGKQIFS 120

Query: 583  LIIPKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLI 638
            LIIP  +NL RT + H D+ DKG    ++ GDT V IE GE++SG LCK+TLGTS+GSL+
Sbjct: 121  LIIPGNVNLIRTHSTHPDDEDKGPYKFISPGDTKVLIEHGEVISGILCKRTLGTSSGSLV 180

Query: 639  HVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNV 698
            HVI+ E+G + AR+F G+ Q +VN WLL    SIGIGD+IAD  T + I  TI KAK +V
Sbjct: 181  HVIFNELGHEIARQFYGNIQTVVNNWLLIEGHSIGIGDSIADEATYQDIQSTILKAKQDV 240

Query: 699  KNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAG 758
              +I++A +  LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLS  NN KAMV AG
Sbjct: 241  VEVIEKAHNDELEPTPGNTLRKTFENQVNRILNDARDKTGSSAQKSLSNFNNFKAMVVAG 300

Query: 759  SKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTP 818
            SKGS INISQ+ A VGQQNVEGKRIPFGF  RTLPHF +DDYGPESRGFVENSYL GLTP
Sbjct: 301  SKGSKINISQVIAVVGQQNVEGKRIPFGFRHRTLPHFIQDDYGPESRGFVENSYLAGLTP 360

Query: 819  QEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGE 878
             EFFFHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRN+   +IQ  YGE
Sbjct: 361  TEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMEGVMVHYDGTVRNANMQLIQLCYGE 420

Query: 879  DGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFD 938
             G+D   IE Q + SLK+  + F + FRF++  E     Y+    +  + T  E+++   
Sbjct: 421  VGLDGSAIEFQDMPSLKLSHTGFQRRFRFDIQNEKRLKQYLHGNIVRSIITDAEVKEKLQ 480

Query: 939  AEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
            +E ++L  DR  + + I  +GDS   LPVNL RLIWNAQK F VDPR+ SD+HPM+V++ 
Sbjct: 481  SEFEQLSKDRNAVRS-ILQNGDSRVALPVNLNRLIWNAQKIFHVDPRKSSDLHPMKVIDD 539

Query: 999  VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            V +L  +L +V GED +S +AQ+NATL FNILLRS  +SKRV +E+ LT EAF+W+IGE+
Sbjct: 540  VCELSRKLVIVHGEDRISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDWLIGEV 599

Query: 1059 ESRFLQSLVAPGEMIGCVAAQSIGEP 1084
            ESRF QS V PGEM+G +AAQS+GEP
Sbjct: 600  ESRFQQSQVQPGEMVGPLAAQSLGEP 625


>gi|78714210|gb|ABB51087.1| RNA polymerase II largest subunit [Bondarzewia montana]
          Length = 732

 Score =  791 bits (2043), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/747 (53%), Positives = 515/747 (68%), Gaps = 31/747 (4%)

Query: 82  HLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK-IRNPKNRLKKILDA 140
           H+ELA+P+FH GF+  V  I+ S+C NC K+ AD  D  F   ++ + +PK R+  +   
Sbjct: 1   HIELARPVFHPGFIVKVKKILESICVNCGKLKADISDPNFADKIRHVXDPKARMSIVWGH 60

Query: 141 CKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
           CK K  CE  +  +       E  KK  GGCG  QP++  EG+K+  +YK   +  DD E
Sbjct: 61  CKGKMICETDEPKEEGEGAESEEPKKGHGGCGHIQPQVRKEGLKLFLQYK---RSKDDDE 117

Query: 201 QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQV-----------L 249
           ++      K+  TA  V   LK+ISD D  LLGL+ +YARP+WMIL V           +
Sbjct: 118 EIKSLQPDKRLFTASEVHNTLKKISDADLHLLGLSDEYARPEWMILTVMPVPPPPVRPSI 177

Query: 250 PIPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELP 309
            +    +R  DDLT++L  II+ + N+RR E+ GAPAH+I+EF QLLQFH+AT       
Sbjct: 178 AVDGGAMRSEDDLTYKLGDIIKASANVRRCEQEGAPAHVITEFEQLLQFHVATXXXXXXX 237

Query: 310 GQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWS 369
              +A Q+SGRP+K+I +RLK KEGR+RGNLMGKRVDFSARTVIT DP + +D++GVP S
Sbjct: 238 XXSQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLELDEVGVPKS 297

Query: 370 IALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHL 429
           IA+ LTYPE VTPYNIE L+ELV  GP   PG   A+Y++RD  +R+DLRY  K +D  L
Sbjct: 298 IAMTLTYPERVTPYNIEYLQELVRNGPTTYPG---ARYVVRDTNERIDLRY-NKRADTFL 353

Query: 430 ELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDE 489
           + G+ VERHL DGDFVLFNRQPSLHKMS+M HR+++MPYSTFRLNLSVT PYNADFDGDE
Sbjct: 354 QFGWIVERHLKDGDFVLFNRQPSLHKMSMMSHRVRLMPYSTFRLNLSVTPPYNADFDGDE 413

Query: 490 MNMH-VPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
           M    VPQS ETRAE+ ++  VP+ I+SPQ+N+PVMGIVQDTL G RK T RDTF++ + 
Sbjct: 414 MXXXXVPQSEETRAELSQIAWVPRQIISPQANKPVMGIVQDTLCGIRKFTLRDTFLDWNQ 473

Query: 549 FMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADN---DKGI 605
             NIL+W  D+DG VP P ++KP+PLWTGKQ+ ++ IP+ IN+ R++     N   D G+
Sbjct: 474 VQNILLWVPDWDGSVPIPAVIKPKPLWTGKQILSMTIPRGINIQRSSDSKTPNPVFDDGM 533

Query: 606 LTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
           +        IE GE++ GT+ KKT+G S G L+HV++ E GP+A R      Q +VN+WL
Sbjct: 534 M--------IENGEIIYGTVEKKTVGASQGGLVHVVFREKGPEATRTLFTGLQTVVNFWL 585

Query: 666 LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
             N FSIGIGDTIAD  TM  I   I++ K NV+ +I  A    L+ EPG T+ ESFE++
Sbjct: 586 FHNGFSIGIGDTIADKGTMAYITQHIAERKANVQQIIDDATHDRLKAEPGMTIRESFESR 645

Query: 726 VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
           V + LN ARD +G  AQK+L E NN+K MV AGSKGSFINISQM+ CVGQQ+VEG+RIPF
Sbjct: 646 VERQLNLARDTSGQYAQKNLKEDNNVKQMVVAGSKGSFINISQMSVCVGQQSVEGRRIPF 705

Query: 786 GFVDRTLPHFTKDDYGPESRGFVENSY 812
           GF  RTLPHFTKDDY PE+RGFVENSY
Sbjct: 706 GFRHRTLPHFTKDDYSPEARGFVENSY 732


>gi|389744278|gb|EIM85461.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Stereum
            hirsutum FP-91666 SS1]
          Length = 1404

 Score =  788 bits (2036), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1459 (35%), Positives = 771/1459 (52%), Gaps = 139/1459 (9%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGE---TTERGKPKPGGLSDPRLGTIDRKMKCETCTA 71
            ++ +QF  L+  ++ ++S  Q+ H +    T+R  P   G+ D RLGT ++   CETC  
Sbjct: 13   IKRLQFSTLNSQDVVKISEFQVTHRDLYTATDR-VPVKDGVLDRRLGTSEKNAFCETCGL 71

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIRNP 130
            N  +C GH+ +++L  P+FHIG+ K  + I++ +C  C+++L +E D + F +  +  N 
Sbjct: 72   NSVDCVGHYAYIKLVVPVFHIGYFKHTIGILQCICKTCARVLLEEPDRRVFIKRFRRPNL 131

Query: 131  KN-RLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEY 189
            +N + + I  A     +      +  P         K  G       K      K  AE 
Sbjct: 132  ENVQRQAIFKAVNGAAR----KTVYCPYCSATNGAVKKAGALKIVHDKFR---AKKTAEE 184

Query: 190  KAQRKKN-----DDQEQLPEPVERK--QTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
              + K++     + Q++L + + +   + L A +VL + KRIS EDC+LLGL P+Y RP+
Sbjct: 185  MEKFKRSFAPAVEAQKELGQYINKAVMEDLNALKVLDLFKRISAEDCELLGLRPEYNRPE 244

Query: 243  WMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
              I Q + +PP  +RPS         DDLT +L  I+  N  +R+    GAP   + E  
Sbjct: 245  EFIWQYISVPPVCIRPSVQQDGASNEDDLTVKLTEIVFTNALIRQGLAKGAPTAQLMEQW 304

Query: 294  QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
            + LQ  +  Y ++E+PG P  +Q   +PI+  C RLK K+GR RGNL GKRVDFS RTVI
Sbjct: 305  EFLQLSVGMYINSEMPGVP--SQMGQKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVI 362

Query: 354  TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
            +PDP + ID++ VP  +A  LTYPE VT +NI+RL++ V  G    PG   A Y+    G
Sbjct: 363  SPDPNLRIDEVAVPERVAKILTYPERVTGFNIDRLRKAVRNGCDVHPG---ANYVTA--G 417

Query: 414  QRLDLRYLKKSSDHHLELGYK----VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
                 +YLK  +   +  G +    VERH+ DGD VLFNRQPSLHK+SIM HR+K+ P+ 
Sbjct: 418  SSGFKKYLKFGNREGIADGLRTGDIVERHIIDGDIVLFNRQPSLHKLSIMCHRVKVRPWR 477

Query: 470  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
            +FRLN  V +PYNADFDGDEMN+HVPQ+ E R E LELM V   +V+P++  PV+  +QD
Sbjct: 478  SFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEALELMNVKHNMVTPRNGEPVIAAIQD 537

Query: 530  TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV--PQPTILKPRPLWTGKQVFNLIIP- 586
             +     +++RD F ++  F  I  ++ D D ++  P PTI KP  LWTGKQVFN+++  
Sbjct: 538  FITASYLLSRRDQFFDRRQFTQICSYFADADLQIDIPPPTIWKPVRLWTGKQVFNVLMHP 597

Query: 587  -KQINLFRTAAWHADNDKG--------------ILTAGDTLVRIEKGELLSGTLCKKTLG 631
             K+ N+        +N +                L+  D  + I   E++ G + K T+G
Sbjct: 598  NKKSNVLVNVETKCNNQQKPDSKAYPRIKDPAPDLSPNDGWLVIVNSEIMCGVMDKATVG 657

Query: 632  TSTGSLIH-VIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDT 690
                 ++  +I  + GP  A   +     L   WL    FS+GI D I      E  +D 
Sbjct: 658  GGKKKMVFGIIMRDYGPHEAAAAMNRLAKLCARWLANFGFSLGINDVIPGPILSEKKDDL 717

Query: 691  ISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNN 750
            + KA     ++I  A+   LE +PG    ++ E  ++ VL+  R+E G    + LS  N 
Sbjct: 718  VEKAYAKCLDMITLAKKGKLENKPGCDQEQTLEAMISGVLSKVREEVGQICMEELSRHNA 777

Query: 751  LKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVEN 810
               M T GSKGS IN+SQM ACVGQQ + G R+P GF DR+LPHF K    P S+GFV N
Sbjct: 778  PLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSREPPSKGFVRN 837

Query: 811  SYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD 870
            S+  GL+P EF FHA+ GREGL+DTAVKT+ETGY+QRRL+KA+ED+  +YD +VRN+ G 
Sbjct: 838  SFYSGLSPTEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVRNATGG 897

Query: 871  VIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTI 930
            V+QF YG+DG+D   +E         +  EF +A         W+    +          
Sbjct: 898  VVQFRYGDDGLDPACLEGDA------QPIEFVRA---------WSHAASIAG-------- 934

Query: 931  KELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDM 990
            + LR +   EV  LE    +LA +  T  + S      ++  +     T   D R+   M
Sbjct: 935  RSLRGLLPYEV--LEITDRELAKQRFTV-ECSAAYIATIRSFVLENVATRLADARQSRGM 991

Query: 991  HPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVL-KEHRLTRE 1049
                                  D L  EA+ +     ++ + +T A K ++  + ++T +
Sbjct: 992  F---------------------DALYREAEWDEET--DLSMGATAAEKAIVDNKAKVTED 1028

Query: 1050 AFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPR 1109
                 +    ++++++ + PG  +G V AQSIGEP TQMTL TFH+AGV++ NVTLGVPR
Sbjct: 1029 QLLSFLNICWTKYVRAKIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPR 1088

Query: 1110 LREIINVAKKIKTPSLSVFLKPGVNSTKE-RAKNVQCALEYTTLRSVTEATEVWYDPDPM 1168
            ++EIIN AK I TP +S  L   V +  E  A+ V+  LE T L  +    E  + P+  
Sbjct: 1089 IKEIINAAKVISTPIISCKL---VTADSEPSARIVKGRLEKTHLGDIAAVLEEAWAPEYT 1145

Query: 1169 GTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEF 1227
               I  D+E V K   E+  +DI    +    L+++  +  ++ KK        ++    
Sbjct: 1146 YIGIMVDMESVQKLQLELTLDDIKWGIVKAKKLKVKQEQITIIPKK-------NRLRLYI 1198

Query: 1228 DDDLTCIFNDDNADKLILRIRIMNDEAPKG------ELNDESAEDDVFLKKIESNMLTEM 1281
            D         D   +L    R++ D   KG       + +   +DD   KK +  +L E 
Sbjct: 1199 D-------GQDKYYRLRELKRLLPDVVVKGVPTIARAVINVKDKDDGRGKKGDRELLVE- 1250

Query: 1282 ALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYR 1341
               G  L  VM  E +   +T+SNH+IE  +VLGIEA R  +++E++  +   G  ++ R
Sbjct: 1251 ---GYGLQKVMTTEGIVGEQTSSNHVIETAQVLGIEAARLTIINEIQYTMGSHGMSIDPR 1307

Query: 1342 HLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTE 1401
            H+ +L D MTY+G ++ ITR G+ +     +M  SFE+T D L DA+ + ++D + GV+E
Sbjct: 1308 HVMLLGDVMTYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDASAWGKTDSVAGVSE 1367

Query: 1402 NIMLGQ-LAPIGTGDCSLY 1419
            +I++G   A  GT   +LY
Sbjct: 1368 SIIMGNPAANCGTSMPALY 1386


>gi|156841103|ref|XP_001643927.1| hypothetical protein Kpol_1016p9 [Vanderwaltozyma polyspora DSM
            70294]
 gi|156114557|gb|EDO16069.1| hypothetical protein Kpol_1016p9 [Vanderwaltozyma polyspora DSM
            70294]
          Length = 1460

 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/1464 (35%), Positives = 779/1464 (53%), Gaps = 112/1464 (7%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCT 70
            K+  ++F  LS  +I   S V++   +    E G+ PK GG  DP++G     M+C TC 
Sbjct: 12   KISGLEFSALSASDIVAQSEVEVSTRDLFDLENGRAPKIGGALDPKMGVSSSSMECTTCH 71

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALK--- 126
             N+A C GHFGH++LA P+FH+G+ K  + I++ +C NCS IL ++ D + F   L+   
Sbjct: 72   GNLASCHGHFGHIKLALPVFHVGYFKATIQILQGICKNCSSILLNDTDRRDFLHELRRPG 131

Query: 127  IRNPKNR--LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            I N K    +KKILD CK + +C     +     +G   +K+   G G+   K+  +  +
Sbjct: 132  IDNLKRMAIIKKILDQCKKQRRC-----LTCGALNG--VVKRAAAGSGSASLKIIHDTFR 184

Query: 185  MIAEYKAQRKKN--DDQEQL----PEPVER-----KQTLTAERVLGVLKRISDEDCQLLG 233
             + +  +  K     D E++    PE +ER        L   + L + K+I  EDC+LLG
Sbjct: 185  WVGKKSSPEKDEWVGDWEKVLANNPE-LERFAKRSMDDLNPLKTLNLFKQIRPEDCELLG 243

Query: 234  LNP--KYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQE 280
            ++   K  RP+  I + LP PP  +RPS           DDLT +L  I+  +  ++   
Sbjct: 244  IDSTVKAGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGL 303

Query: 281  RNGAPAHIISEFAQLLQFHIATYFDNE------LPGQPRATQRSGRPIKSICSRLKAKEG 334
              G   + + E    LQ  +A Y +++      +PG      ++ +PI+  C RLK K+G
Sbjct: 304  EKGISINNMMEHWDYLQLSVAMYINSDSVNPSMMPGASSGGAKA-KPIRGFCQRLKGKQG 362

Query: 335  RIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEY 394
            R RGNL GKRVDFS RTVI+PDP ++ID++ VP  +A  LTYPE VT YN E+L+ LV  
Sbjct: 363  RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNREKLQALVIN 422

Query: 395  GPHPPPGKTGAKYIIR-DDGQRLDLRY---LKKSSDHHLELGYKVERHLNDGDFVLFNRQ 450
            GP+  PG   A YI++ ++  R +LRY   LK +    L +G  VERHL DGD VLFNRQ
Sbjct: 423  GPNVHPG---ANYILKANEEARRNLRYGDRLKIAK--QLRVGDIVERHLEDGDIVLFNRQ 477

Query: 451  PSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 510
            PSLH++SI+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V
Sbjct: 478  PSLHRLSILSHFAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGV 537

Query: 511  PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED----FDGKVPQP 566
               +++P+S  P++   QD + G   I+ +DTF+++  F  +L    D    FD  +P P
Sbjct: 538  KNNLLTPKSGEPIIAATQDFITGSYLISHKDTFLDRATFTQLLSMMSDSNLQFD--IPPP 595

Query: 567  TILKPRPLWTGKQVFNLII------PKQINL-FRTAAWHADNDKGI---LTAGDTLVRIE 616
            TI+KP  LWTGKQ+F+L+I      P  INL  +   +     K +   ++  D  V I 
Sbjct: 596  TIIKPYCLWTGKQLFSLLIKPNKDSPVVINLDAKNKVFIPPKSKSLPNEMSQNDGFVVIR 655

Query: 617  KGELLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 675
              ++LSG + K  LG     S+ + I  + GP  A   +     L   +L    FSIGI 
Sbjct: 656  GSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARYLGNRGFSIGIS 715

Query: 676  DTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARD 735
            D   D    +   + +  A      LI       LE +PG    ++ E K+  +L+  R+
Sbjct: 716  DVTPDNALKQKKEELVEIAYAKCDELIDLFTKGKLETQPGCNEEQTLEAKIGGLLSKVRE 775

Query: 736  EAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 795
            E G      L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHF
Sbjct: 776  EVGDICINELDNLNAPLIMATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835

Query: 796  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 855
             K+   P+S+GFV NS+  GL+P EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED
Sbjct: 836  RKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 895

Query: 856  IMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDE--EN 913
            +  +YD TVR S   ++QF YG DG+D + +E      +  K+S +D A     D   + 
Sbjct: 896  LSCQYDNTVRTSSNGIVQFTYGGDGLDPLEMEGNA-QPVNFKRS-WDHAINITFDNSAQG 953

Query: 914  WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLI 973
              P  ++ +  D L   +E    +D  +  L     Q   E     DS      +L++ +
Sbjct: 954  LLPYAIINKTNDILAPFEERLIRYD-NIGTLVKANDQAKDEFVDQLDSERNFYCSLRKYM 1012

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
               + +     R+             DK  + L   PG +   ++  +  +        +
Sbjct: 1013 -QEKASILASIRK-------------DKGLKELSSEPGNEFKEMDLDEGES------SEA 1052

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTF 1093
             FA +++ K   +T +  E  +    S++ ++ V PG  +G + AQSIGEP TQMTL TF
Sbjct: 1053 RFAVEKLCK---ITEKTVEKFLEIAMSKYRRARVEPGTAVGAIGAQSIGEPGTQMTLKTF 1109

Query: 1094 HYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCALEYTTL 1152
            H+AGV++ NVTLGVPR++EIIN +K I TP ++  L   VN   +R A+ V+  +E T L
Sbjct: 1110 HFAGVASMNVTLGVPRIKEIINASKVISTPIINAVL---VNDNDKRAARVVKGRIEKTLL 1166

Query: 1153 RSVTEATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVD 1211
              V    +  Y  +     ++ D+  + K   E+  EDIA        L+I+     +V 
Sbjct: 1167 SDVAYYVQDVYKDNLSFLEVKIDLSTIDKLQLELTIEDIAVALTRAPKLKIQTTDVQIVS 1226

Query: 1212 K-KLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFL 1270
            K K++++   E    +    ++    + + + +  R++ +    P+  +N         +
Sbjct: 1227 KDKITISVYPEGSKAK---SISTSMKEPSENDVFYRMQTLRRALPQIVVNGLPDIARAVI 1283

Query: 1271 KKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
              I  +   E+ + G  L  VMC + V   +TT+NH++E+  VLGIEA R +++ E+   
Sbjct: 1284 -NIRDDGKRELLVEGYGLREVMCTDGVIGSKTTTNHVLEVFSVLGIEAARSSIIGEIDYT 1342

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            +S  G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T D L DAA +
Sbjct: 1343 MSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFY 1402

Query: 1391 AESDYLRGVTENIMLGQLAPIGTG 1414
             + D + GV+E I+LGQ   IGTG
Sbjct: 1403 MKKDAVEGVSECIILGQTMSIGTG 1426


>gi|290999395|ref|XP_002682265.1| predicted protein [Naegleria gruberi]
 gi|284095892|gb|EFC49521.1| predicted protein [Naegleria gruberi]
          Length = 1426

 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1463 (35%), Positives = 770/1463 (52%), Gaps = 158/1463 (10%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQI--EHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTA 71
            ++  ++F + +P++IR+MS VQI  +H  T ++ +  P G  DPRLGT  +K  CETC  
Sbjct: 28   RISQIKFSVFTPEDIRRMSTVQIYNQHYYTPDK-RGFPHGPLDPRLGTGTKKDICETCGL 86

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD-----HKFKQALK 126
             +A+C GH+G+++L  P+FHIGF+  V+ +++ +C +CS++L  + +     +KFK+ + 
Sbjct: 87   GVADCIGHYGYVKLELPVFHIGFISNVVEVLQRICKDCSRVLLSDSEIQSFRNKFKRPMD 146

Query: 127  IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLT-IEGMKM 185
             +  K   KK+ + CK  ++C                       CG+   K+T +  +K+
Sbjct: 147  NQQKKALYKKVGELCKKCSQCPH---------------------CGSLNGKVTKLNAIKI 185

Query: 186  IAE-YK--AQRKKNDDQEQLPEPVERKQTLTAE-------------------RVLGVLKR 223
            + E YK  + RK  DD +Q     + +  L  +                   R L + K 
Sbjct: 186  VHEKYKVASTRKGKDDIDQQSREFQSEFGLAVQLNPEIEPFLGEAQDDINPIRCLRLFKN 245

Query: 224  ISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNE 274
            ISD D ++L +NPK  RP+  IL  + +PP  +RP+         DDLT Q+  II  N 
Sbjct: 246  ISDTDVEVLNMNPKVVRPENFILTHILVPPLVIRPTVNTDGGTNEDDLTAQMKKIIETNI 305

Query: 275  NLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEG 334
             LR     GA      E    LQ   A Y +++    P    +  +  K++C RLK K G
Sbjct: 306  ILRESVEQGAIVQNFMEKWDTLQLETALYINSDTRNIPSFVTKK-KVSKTLCQRLKGKHG 364

Query: 335  RIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEY 394
            R RGNL GKR +F+ RTVI+PDP + I+Q+ +P  +A  LTYPE V   N + L+ L+  
Sbjct: 365  RFRGNLSGKRANFTGRTVISPDPNLEINQVAIPELVAKVLTYPEVVNRTNKKLLQSLILN 424

Query: 395  GPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD--HHLELGYKVERHLNDGDFVLFNRQPS 452
            GP   PG   A ++I+ DG R +L + K   +   +L+ G  VERH+ +GD+ LFNRQPS
Sbjct: 425  GPEVHPG---ANFVIKSDGIRKNLAFAKDKMEVAKNLKFGDIVERHVMNGDYALFNRQPS 481

Query: 453  LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPK 512
            LH++SIM HR+K++PY TFR N+   +PYNADFDGDEMN+H+PQ+ E +AE   LM + K
Sbjct: 482  LHRLSIMCHRVKVLPYRTFRFNVCDCAPYNADFDGDEMNVHIPQTEEAKAEAGMLMDILK 541

Query: 513  CIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL--MWWEDFDGKVPQPTILK 570
             +++P++  PV+   QD L    K+T+++TF ++  F  +   M  ED    +P PTILK
Sbjct: 542  NLITPKNGDPVISCNQDFLTAAWKMTRKNTFFDRAEFCMLCSYMGIEDKKIDLPPPTILK 601

Query: 571  PRPLWTGKQVFNLIIP-----KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTL 625
            P  LWTGKQ+F+L++           F T A +   D+  +   D  V      L+ G L
Sbjct: 602  PIELWTGKQLFSLLVKPNNNTNVFVNFETKAKNYLKDE-TMCPNDGYVCFRNSYLICGNL 660

Query: 626  CKKTLGT-STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTM 684
             KK LG  S  SL +V+   VGP  A   +     + + WL+   FSIGI D +  A+  
Sbjct: 661  DKKILGDGSKSSLFYVLIRTVGPAYAAACMARVARVASRWLMNYGFSIGIDDVMPSAQLT 720

Query: 685  ETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKS 744
            E     +S+        IK  +D  LEP+PG  M ++ E K+N+ L+  R  AGS     
Sbjct: 721  EKKKMILSEGYAVCDEYIKLYKDGKLEPQPGCNMEQTLEAKLNRELSEIRGRAGSMCLDE 780

Query: 745  LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 804
            L   N    M   GSKGS INISQM ACVGQQ V G RI  GF++RTLPHF      P +
Sbjct: 781  LHWLNAPLTMSVCGSKGSVINISQMIACVGQQTVGGTRIANGFMNRTLPHFPMFARDPAA 840

Query: 805  RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 864
            +GFV NS+  GLTP EFFFH MGGREG++DTAVKT+ETGY+QRRL+KA+ED+ V YDG+V
Sbjct: 841  KGFVSNSFFTGLTPTEFFFHTMGGREGIVDTAVKTAETGYMQRRLMKALEDLFVAYDGSV 900

Query: 865  RNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYI 924
            R++   VIQF YG+DGMD   +ES+        +S     F F M  E    N  L    
Sbjct: 901  RSADNTVIQFKYGDDGMDPHRMESE--------ESGRPLNFTFVMMHEK---NINLPTKD 949

Query: 925  DDLKTIKELRDVFDAEVQKLEADRY--QLATEIATSGDSSWPLPVNLKRLIWNAQKTFKV 982
            +   T  E+R   D+ +++ E++ +  +   E++T  ++                     
Sbjct: 950  EKALTPDEIRQKLDSFLKEKESNIFSDKFIDELSTFTNN--------------------- 988

Query: 983  DPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLK 1042
                            + KL+  LK V   + +  E + NA              K V  
Sbjct: 989  ---------------YIFKLENLLKGVAAANSIRDENENNA------------WEKVVHY 1021

Query: 1043 EHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKN 1102
              ++T            S++ ++L  PGE +G +A QSIGEP TQMTL TFH+AGV++ N
Sbjct: 1022 IEKITDRQLTSFFRACRSKYFRALAEPGEPVGGIAGQSIGEPTTQMTLKTFHFAGVASMN 1081

Query: 1103 VTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER----AKNVQCALEYTTLRSVTEA 1158
            VTLGVPR++EII+  K I TP ++ +L   + +TK++    A+ V+  +E TTL  V   
Sbjct: 1082 VTLGVPRIKEIIDATKNISTPIITAYLDTPLTATKKQKEMAARVVKGRIEKTTLGQVVNY 1141

Query: 1159 TEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKI------SPWLLRIELNREMMVDK 1212
                Y+       I+ DV+ + +       DI PE +      SP L++ E  +E   DK
Sbjct: 1142 IREVYNLGICYIEIDLDVKQISAL----QLDITPETVKNSILYSP-LMKFEKGKEKSKDK 1196

Query: 1213 -KLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLK 1271
             KLS      +I +     +       + D++   I+ +    P+  +      +   + 
Sbjct: 1197 TKLSDEPNLVQIQK---GKVRVYPPSVDRDRMYFNIQKLKRYLPEVIVAGIPTTNRAVIN 1253

Query: 1272 KIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
            + + N+   + + G +LLAVM    V A+ T +N++IEI + LGIE+ R+ ++DE++   
Sbjct: 1254 EEKGNVY--LLVEGTDLLAVMGTPGVLAKTTKTNNIIEISQTLGIESARQLIMDEIKYTT 1311

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
               G  ++ RH+ +L D MT++G +  I RHGI +     +   SFE+T D L +AA   
Sbjct: 1312 GSYGMNIDTRHIKLLADIMTFKGDIFGIQRHGIIKIRDSVLKMASFEQTTDHLFEAASHT 1371

Query: 1392 ESDYLRGVTENIMLGQLAPIGTG 1414
              D + GV+E I++G   PIGTG
Sbjct: 1372 RVDDVNGVSECIIMGVPIPIGTG 1394


>gi|342320897|gb|EGU12835.1| DNA-directed RNA polymerase [Rhodotorula glutinis ATCC 204091]
          Length = 1804

 Score =  783 bits (2023), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1472 (34%), Positives = 772/1472 (52%), Gaps = 150/1472 (10%)

Query: 16   RMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPG-------GLSDPRLGTIDRKMKCET 68
            + +QF +LS  E      V I   E  +R    PG       G+ D RLGT D+  KC+T
Sbjct: 361  KHIQFSVLSSRE-----AVAISEFEANQRDLYTPGDRRPVEHGVLDKRLGTSDKTGKCDT 415

Query: 69   CTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR 128
            C   +A+C GH+ +++L  P+FHIG+ K +LSI++ +C  CS+IL D   H+   AL  R
Sbjct: 416  CGLGLADCVGHYAYIKLVLPVFHIGYFKHILSILQCICKTCSRILLDSSQHRKYLALFRR 475

Query: 129  NPKNRL------KKILDACKNKTKCEGGDEIDVPGQD------GEEP-----LKKNKGGC 171
               + L      K++   C+  T C     I+   +       G E      LKK+ GG 
Sbjct: 476  PNLDSLTIAAYSKQLAALCRKCTTCPHCGAINGVVKKIGTMRIGHEKWRGRNLKKDAGG- 534

Query: 172  GAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT--LTAERVLGVLKRISDEDC 229
                 +   EG      ++    +   ++++ EP   K    L   +VL + ++I+  DC
Sbjct: 535  -----RDGAEGKGNYTAWRESFAEAVKEDKMLEPHIDKAIDDLNPLKVLTLFRKITSSDC 589

Query: 230  QLLGLNPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQE 280
            +LLGL+P   RP+  + Q + +PP  +RPS         DDLT +L  I+  N  ++   
Sbjct: 590  ELLGLDPTAGRPEEFLWQYISVPPVCIRPSVAQEAATNEDDLTVKLTEIVFMNAVIKTGL 649

Query: 281  RNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 340
              G     + E    LQ  +ATY ++E+PG P A  +  +P++ +C RLK K+GR RGNL
Sbjct: 650  AKGVTTQNLMEQWDFLQLAVATYINSEMPGIPTAMGQ--KPMRGLCQRLKGKQGRFRGNL 707

Query: 341  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 400
             GKRVDFS RTVI+PDP + IDQ+ VP  +A  LTYPE VT +NIERL++ V  G    P
Sbjct: 708  SGKRVDFSGRTVISPDPNLMIDQVAVPERVAKILTYPERVTAHNIERLRQAVRNGTDVHP 767

Query: 401  GKTGAKYIIRD--DGQRLDLRYLKKS-SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 457
            G   A +I +   DG +  L+Y  +      L +G  VERHL D D VLFNRQPSLH++S
Sbjct: 768  G---ANFINQGGGDGSKKFLKYGDREFMADKLRVGDVVERHLRDDDIVLFNRQPSLHRLS 824

Query: 458  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 517
            I+ HR+K+ P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E R E  +LM + + +V+P
Sbjct: 825  ILSHRVKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARTEAFQLMNIKRNLVTP 884

Query: 518  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED--FDGKVPQPTILKPRPLW 575
            ++  P++   QD + GC  IT+RDTF  +  F+ +  + +D   + ++P PTILKP  LW
Sbjct: 885  RNGEPIIAATQDFITGCYLITRRDTFFNRQEFVQMCSYLQDAELEIELPPPTILKPERLW 944

Query: 576  TGKQVFNLII------PKQINL------FRTAAWHADNDK-GILTAGDTLVRIEKGELLS 622
            TGKQVFN+++      P  +NL      F   +   D      ++  D  + ++  E++S
Sbjct: 945  TGKQVFNVLMRPNKDSPVNVNLECKNKTFGKPSTEFDMSYPNFMSVNDGYLVVQNSEIIS 1004

Query: 623  GTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 681
            G   K T+G     S+  VI  + G D A K +     L   WL    FSIGI D     
Sbjct: 1005 GVFDKSTVGDGNKKSVFAVIQRDFGEDHAAKCMNRMAKLCARWLANKGFSIGISDVTPGE 1064

Query: 682  KTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSA 741
            +     +D + +A       I++A    LE +PG  + ++ E+ ++  L+  RD+ G   
Sbjct: 1065 RLKAEKDDLVRRAYGQADEYIEKAARGKLECQPGSNLEQTLESLISGDLSRVRDQVGEIC 1124

Query: 742  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYG 801
               LS +N    M T GSKGS IN+SQM ACVGQQ + G R+P GF DR+LPHF K    
Sbjct: 1125 MTELSRNNAPLIMATCGSKGSKINVSQMVACVGQQIIAGHRVPNGFQDRSLPHFPKGAID 1184

Query: 802  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 861
            P ++GFV NS+  GL   EF FHA+ GREGL+DTAVKT+ETGY+ RRL+KA+ED+  +YD
Sbjct: 1185 PLAKGFVSNSFYSGLRATEFLFHAISGREGLVDTAVKTAETGYMARRLMKALEDLSSRYD 1244

Query: 862  GTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQ 921
             +VRN+ G V+QF+YG+DG+D   +E         K   F++ +         +P   + 
Sbjct: 1245 RSVRNATGGVVQFIYGDDGLDPANLEGDG------KPVVFERTWAHARVSSPSSPPPAVH 1298

Query: 922  EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKT-- 979
            E+           D F A+  +L+ +   L             LP  + RL+  A+KT  
Sbjct: 1299 EF-----------DGFFAQALRLDVNEEGL-------------LPYEINRLV--AEKTAT 1332

Query: 980  ----------FKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNI 1029
                      F  + R   D    ++ +   K +E   + P   PL    ++N + F   
Sbjct: 1333 PYFTNSCSEEFLRELREFVD---QQIAQQAAKYREEYGMPPALAPL----KRNQSKFG-- 1383

Query: 1030 LLRSTFASKRVLKEH-RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQM 1088
              ++  A + ++    ++T    E  +    ++F+++ + PG  +G + AQSIGEP TQM
Sbjct: 1384 --KADAAMQAIVNNKTKVTVTQIEEFLQLCWTKFVKAKIEPGSAVGAIGAQSIGEPGTQM 1441

Query: 1089 TLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALE 1148
            TL TFH+AGV++ NVTLGVPR++EIIN AK I TP +S  L    +  ++ A+ V+  +E
Sbjct: 1442 TLKTFHFAGVASMNVTLGVPRIKEIINAAKTISTPIISAKLFQ--DKLEQAARIVKGRVE 1499

Query: 1149 YTTLRSVTE--ATEVWYDPDPMGTIIEEDVEFVKSYYEM-PDEDIAPEKISPWLLRIELN 1205
             T L  V+    T V  +   +   I   +  V S  +M     I    I    L + L+
Sbjct: 1500 KTYLGDVSHRLITLVSLELTDLVVQIASVIAGVYSQGQMYVSVHIDMRAIRALQLEVTLD 1559

Query: 1206 REMMVDKKLSMA-----AVAEKINQEFDDDLTCIFNDDNADK------LILRIRIMNDEA 1254
                +   +S A       A+   +   D++  + + +  DK      L+   R++   +
Sbjct: 1560 S---IAASISSAPRLKIKSADITVKRHTDEIHIVAHHNGEDKMPAYRRLMWLRRVLPSIS 1616

Query: 1255 PKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVL 1314
             KG    + A   V  +  E   + E+ + G  L  VM  + V   +T SNH++E+ +VL
Sbjct: 1617 VKGVPGLQRA---VIQQNGEG--IKELLVEGEGLREVMVTDGVIGTQTKSNHVMEVEKVL 1671

Query: 1315 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
            GIEA R+ ++D++   +   G  V+ RHL +L D M ++G ++ ITR G+++     +M 
Sbjct: 1672 GIEAARKTIIDQIHYTMDSHGLGVDPRHLMLLGDVMCFKGEVLGITRFGVSKMKDSVLML 1731

Query: 1375 CSFEETVDILLDAAVFAESDYLRGVTENIMLG 1406
             SFE+T D L DA+  A  D ++GV+E I+LG
Sbjct: 1732 ASFEKTTDHLFDASFNARRDPIQGVSECIILG 1763


>gi|448112703|ref|XP_004202165.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
 gi|359465154|emb|CCE88859.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
          Length = 1454

 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1466 (34%), Positives = 776/1466 (52%), Gaps = 112/1466 (7%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCT 70
            +++ VQFG LS  +I   S V+++  +    E+G+  K  G  D R+G      +C TC 
Sbjct: 12   RIKGVQFGALSASDIIAQSEVEVQTRDLYDLEKGRTAKESGALDTRMGISSNSSECSTCH 71

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIRN 129
             N+A C GHFGH+ LA P+FH+G+ K ++S+++S+C NC  IL DE   + F   L+  N
Sbjct: 72   GNLASCHGHFGHIRLALPVFHVGYFKNIMSVLQSICKNCGAILLDETTRRSFLNELRRPN 131

Query: 130  PKNR-----LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
              N      LK+IL+ CK + +C   + I+         +KK   G G    K+  +  +
Sbjct: 132  LDNLKRMKILKRILEQCKKQRRCVKCNHIN-------GVVKKAASGSGPAALKIVHDTFR 184

Query: 185  MIA------------EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLL 232
             I             E+     +N + E+  + V     L   +VL + K+I   DC+LL
Sbjct: 185  WIGKKPTPEKALWNEEFDEVFARNPELEKFSKRV--YDDLNPLKVLNLFKQIEPADCELL 242

Query: 233  GLNP-KYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERN 282
            G++P +  RP+  I + LP PP  +RPS         DDLT +L  I+  +  +R     
Sbjct: 243  GIDPARGGRPEMYIWRYLPAPPVCIRPSVMMDTQSNEDDLTVKLTEIVWTSSLIRAGIEK 302

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQP----RATQRSGRPIKSICSRLKAKEGRIRG 338
            G   + + E    LQ  +A Y +++             +S +PI+  C RLK K+GR RG
Sbjct: 303  GITINNLMEQWDYLQLSVAMYINSDAANSAFLPSSGGSKSAKPIRGFCQRLKGKQGRFRG 362

Query: 339  NLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHP 398
            NL GKRVDFS RTV++PDP + ID++ VP  +A  LTYPE  T YN ++L+ L+  GP+ 
Sbjct: 363  NLSGKRVDFSGRTVVSPDPNLRIDEVAVPDRVAKVLTYPEMCTRYNRKKLQRLILNGPNT 422

Query: 399  PPGKTGAKYIIR-DDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKM 456
             PG   A Y+++ ++  + +LR+  +     +L +G  VERH+ DGD VLFNRQPSLH++
Sbjct: 423  YPG---ANYLMKQNEAAKRNLRFGDRVKLAKNLHIGDVVERHIEDGDVVLFNRQPSLHRL 479

Query: 457  SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 516
            SI+ H  K+ P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   +++
Sbjct: 480  SILSHFAKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLT 539

Query: 517  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK--VPQPTILKPRPL 574
            P+S  P++   QD + G   I+ +D+F ++   + +L    D + +  +P P I KP  L
Sbjct: 540  PKSGEPIIAATQDFITGSYLISHKDSFYDRAALVQMLSMMSDANVQYDIPPPAIFKPVML 599

Query: 575  WTGKQVFNLIIPKQINLFRTAAWHADNDKGI---------LTAGDTLVRIEKGELLSGTL 625
            WTGKQ+F+L+I    N        A N   I         ++  D  V I   ++LSG +
Sbjct: 600  WTGKQIFSLLIRPNKNSKVLINLDAKNKTFIPPLKGFPNEMSQNDGFVVIRGSQILSGVM 659

Query: 626  CKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTM 684
             K  LG     S+ + I  + GPD A   +     L   ++    FSIGI D I  ++  
Sbjct: 660  DKSLLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARFMGNRGFSIGINDVIPGSELK 719

Query: 685  ETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKS 744
            +     + +A      LI       LE +PG    ++ E K+  +L+  R++ G    K 
Sbjct: 720  QKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREQVGEICIKE 779

Query: 745  LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 804
            L  +N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHFTK+   P+S
Sbjct: 780  LDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNSKTPQS 839

Query: 805  RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 864
            +GFV NS+  GL+P EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD TV
Sbjct: 840  KGFVRNSFFSGLSPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDNTV 899

Query: 865  RNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK-KSEFDKAFR--FEMDEENWNPNYMLQ 921
            RNS   ++QF YG DG+D + +E    D+  +    ++D AF   F++ +    P  +L 
Sbjct: 900  RNSSNGIVQFTYGGDGLDPLDMEG---DAKPVNFNRQWDHAFNVTFDVKDRGLKPYEILN 956

Query: 922  --EYIDDLKTIKELRDVFDAEVQKLE-ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQK 978
              EY+ +    K +R     ++  LE +D+ + A E             + +R  +N+ +
Sbjct: 957  AVEYVLNPLEKKLVRYSNSGKILSLEDSDKIEYADE------------KDAERNFYNSIR 1004

Query: 979  TFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASK 1038
             F             E    + +++ER  + P     S+   K+  +          A  
Sbjct: 1005 EF-----------ITEKAVQLAQIRERRNLKP-----SLRPPKDDEMDVVDDEACLNAVN 1048

Query: 1039 RVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1098
            ++LK   ++ +A    + +   ++ ++ V PG  +G + A SIGEP TQMTL TFH+AGV
Sbjct: 1049 QLLK---ISEKAIRSFLDQCIYKYFRAKVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGV 1105

Query: 1099 SAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCALEYTTLRSVTE 1157
            ++ NVTLGVPR++EIIN +K I TP ++  L   VN   ER A+ V+  +E T L  V  
Sbjct: 1106 ASMNVTLGVPRIKEIINASKVISTPIINSVL---VNDDDERAARVVKGRIEKTLLEDVAF 1162

Query: 1158 ATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSM 1216
              E  Y  +     I+ D+E + K   E+  E IA    +   L+I    ++ +  K  +
Sbjct: 1163 YIEDVYKENMAYISIKVDLETIEKLQLELTIEQIARAIANAPKLKISA-ADVAISGKDKI 1221

Query: 1217 AAVAEKINQEFDDDLTCIFND----DNADKLILRIRIMNDEAPKGELNDESAEDDVFLKK 1272
              +    + + D+ +  I  D    D  + L  R +++    P   +N  S      +  
Sbjct: 1222 NVLVTLKDSKADNLMRNIAADYGSTDMNNSLFFRAQVLKRALPHICVNGLSDISRAVI-N 1280

Query: 1273 IESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
            I  +   E+ + G  L  VM  + V   +TT+NH++EI EVLGIEA R +++ E+   ++
Sbjct: 1281 IRDDGKKELLVEGYGLKNVMSTDGVVGTKTTTNHVLEIFEVLGIEAARASIIKEIDYTMT 1340

Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
              G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T D L DA+ + +
Sbjct: 1341 NHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMK 1400

Query: 1393 SDYLRGVTENIMLGQLAPIGTGDCSL 1418
             D + GV+E I+LGQ   IGTG   L
Sbjct: 1401 EDKIEGVSECIILGQTMNIGTGAFKL 1426


>gi|169869303|ref|XP_001841218.1| DNA-directed RNA polymerase III largest subunit [Coprinopsis cinerea
            okayama7#130]
 gi|116497686|gb|EAU80581.1| DNA-directed RNA polymerase III largest subunit [Coprinopsis cinerea
            okayama7#130]
          Length = 1403

 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1455 (34%), Positives = 760/1455 (52%), Gaps = 160/1455 (10%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGET---TERGKPKPGGLSDPRLGTIDRKMKCETCTA 71
            ++ +QF +L+  +  ++S  ++ H +    TER  P   G+ D RLGT ++   CETC  
Sbjct: 13   IKKLQFSLLNAQDTVKISEFEVTHRDLYTPTER-LPVKHGVLDRRLGTTEKSAFCETCGQ 71

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIRNP 130
            +   C GH+ +++L  P+FHIG+ K  + I++S+C +C+++L +E D + + +  +  N 
Sbjct: 72   SSVNCVGHYAYIKLCVPVFHIGYFKHTIGILQSICKSCARVLLEEPDRRTYLKRFRRPNL 131

Query: 131  KNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYK 190
            +N  ++ L    N         +  P              C A    +   G   I   K
Sbjct: 132  ENIHRQALFKAVNSM---ARKVVYCPY-------------CSATNGAVKTAGALKIIHDK 175

Query: 191  AQRKKNDDQ-----EQLPEPVERKQTLTAE------------RVLGVLKRISDEDCQLLG 233
             + KK  D+     +     VE ++ L               +VL + +RISDEDC+LLG
Sbjct: 176  FRAKKTADELEKWKKTFVAAVEAQKELGMYLNKAVVEDLNPLKVLDLFRRISDEDCELLG 235

Query: 234  LNPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGA 284
            L P++ RP+  I Q L +PP  +RPS         DD+T +L  I+  N  +++    GA
Sbjct: 236  LRPEWGRPEQFIWQYLSVPPVCIRPSVAQDGASNEDDITVKLTEIVFTNALIKQGLSKGA 295

Query: 285  PAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKR 344
            P     E  + LQ  +A Y ++ELPG P  +Q   +PI+    RLK K+GR RGNL GKR
Sbjct: 296  PTPQFMEQWEFLQLSVAMYINSELPGVP--SQMGQKPIRGFVQRLKGKQGRFRGNLSGKR 353

Query: 345  VDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTG 404
            VDFS RTVI+PDP + ID++ VP  +A  LTYPE VT +NIE L++ +  GP   PG   
Sbjct: 354  VDFSGRTVISPDPNLRIDEVAVPERVAKILTYPERVTMHNIETLRQAIRNGPDVHPG--- 410

Query: 405  AKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIK 464
            A Y+ R + ++      +++   +L +G  VERH+ DGD VLFNRQPSLHK+SIM HR K
Sbjct: 411  ANYVARGETKKFLKFGNRQAIADNLAIGDIVERHVIDGDIVLFNRQPSLHKLSIMCHRAK 470

Query: 465  IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 524
            I P+ TFRLN  V  PYNADFDGDEMN+HVPQ+ E R E LELM V   +V+P++  PV+
Sbjct: 471  IRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARTEALELMSVKHNLVTPRNGEPVI 530

Query: 525  GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV--PQPTILKPRPLWTGKQVFN 582
              +QD +     I+++D F ++  F  I  +  D D  +  P PTI KP  LWTGKQ+FN
Sbjct: 531  SAIQDFITASFLISRKDRFFDRREFTQICCYLGDADLHIDIPPPTIWKPVQLWTGKQIFN 590

Query: 583  LIIP--KQINLF-----RTAAWHADNDKGI---------LTAGDTLVRIEKGELLSGTLC 626
            +++   KQ  +F     +   W     +           L+  D  + +   E++ G + 
Sbjct: 591  VLMRPNKQSKIFINVESKCQKWEEAKPQNFPPRITLQPDLSPNDGWLVVVNSEIMCGVMD 650

Query: 627  KKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTME 685
            K T+G+    S+  VI  + GP  A   +G    L   +L    FS+GI D I       
Sbjct: 651  KATVGSGKKKSIFGVILRDYGPHEAAIAMGRLAKLCARYLANYGFSLGINDVIPGPVLSS 710

Query: 686  TINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSL 745
              +  + KA  + ++LI  A+   LE +PG    ++ E  ++ VL+  R+E G    K L
Sbjct: 711  QKDVLVEKAYADCEDLIALAKKGKLENKPGCNQEQTLEAMISSVLSKVREEVGQICMKEL 770

Query: 746  SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESR 805
            S  N    M T GSKGS IN+SQM ACVGQQ + G R+P GF DR+LPHF K    P S+
Sbjct: 771  SRHNAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPNGFQDRSLPHFPKKSKTPPSK 830

Query: 806  GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVR 865
            GFV NS+  GL   EF FHA+ GREGL+DTAVKT+ETGY+QRRL+KA+ED+  +YD +VR
Sbjct: 831  GFVRNSFYSGLVATEFLFHAISGREGLVDTAVKTAETGYMQRRLMKALEDLTTQYDLSVR 890

Query: 866  NSLGDVIQFLYGEDGMDSVWIE--SQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEY 923
            NS G V+QF YG+DG+D   +E  +Q LD         D+++R      N          
Sbjct: 891  NSTGGVVQFQYGDDGLDPACLEGDAQPLD--------MDRSWRHAQARSN---------- 932

Query: 924  IDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTF--- 980
                   ++ R +   E+ ++      + T +A+   +   LP        +A + F   
Sbjct: 933  -------RKTRGLLPFEIIQI------VETTLASPRFTQSCLPAYC-----DAVRDFIVK 974

Query: 981  KVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRV 1040
            KV  R  S     ++ +A++K +E       E+              ++ L ++ A KRV
Sbjct: 975  KVASRVASVRAKHDMFDALEKPEEW-----DEE-------------MDLTLGASEACKRV 1016

Query: 1041 L-KEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1099
            +  + ++T       +     R++++ + PG  +G V AQSIGEP TQMTL TFH+AGV+
Sbjct: 1017 VDNKAKVTESHLRIFLDICWERYVKARIEPGSTVGAVGAQSIGEPGTQMTLKTFHFAGVA 1076

Query: 1100 AKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEAT 1159
            + NVTLGVPR++EIIN AK I TP +S   K     ++  A+ V+  LE T L  V    
Sbjct: 1077 SMNVTLGVPRIKEIINAAKAISTPIISC--KLVTPDSEPSARIVKGRLEKTLLGDVVSVL 1134

Query: 1160 EVWYDPD--PMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMA 1217
            E  + PD   +G I++ D    K   E+  +DI    ++   L+I+     ++ +K  + 
Sbjct: 1135 EEAWAPDYTYIGIIVDVDA-IQKLQLELTLDDIKWAIVAAKKLKIKQESITIIPRKNRLR 1193

Query: 1218 AVAEKINQEFDDDLTCIFNDDNADKLILRIRIMN----DEAPKGELNDESAEDDV--FLK 1271
                                D  DK   RIR +     D   KG    + A  ++     
Sbjct: 1194 IYV-----------------DGEDKF-YRIRELRRGLADVVVKGLPTIQRAIINIKDKDD 1235

Query: 1272 KIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
                    E+ + G  L   M  E V    TTSNH+IE+ +VLGIEA RR +++E++  +
Sbjct: 1236 DRGKKGDKELLVEGYGLQKCMITEGVVGEFTTSNHVIEVAQVLGIEAARRTIINEIQYTM 1295

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
                  ++ RH+ +L D MTY+G ++ ITR G+ +     +M  SFE+T D L DA+ + 
Sbjct: 1296 KSHDMNIDPRHVMLLGDVMTYKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDASAYG 1355

Query: 1392 ESDYLRGVTENIMLG 1406
            ++D + GV+E+I++G
Sbjct: 1356 KTDSIAGVSESIIMG 1370


>gi|242015075|ref|XP_002428200.1| DNA-directed RNA polymerase III largest subunit, putative [Pediculus
            humanus corporis]
 gi|212512752|gb|EEB15462.1| DNA-directed RNA polymerase III largest subunit, putative [Pediculus
            humanus corporis]
          Length = 1364

 Score =  781 bits (2018), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1451 (34%), Positives = 771/1451 (53%), Gaps = 142/1451 (9%)

Query: 7    YSPAEVAK-VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPK---PGGLSDPRLGTIDR 62
            Y    +AK +  V FG+ SP+ I+Q + + +       +  P+     G+ D ++GT  +
Sbjct: 6    YRETNIAKMISHVCFGVDSPEVIQQQAHIHVVGKNLYNQDAPRTPVAYGVLDRQMGTNTK 65

Query: 63   KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
               C TC   +A+C GHFG++ L  P+FHIG+ ++V+ I++++C  CSK+L  ED  K  
Sbjct: 66   DATCTTCNKGLADCIGHFGYINLELPVFHIGYFRSVIMILQTICKTCSKVLLPEDLKKTY 125

Query: 123  QALKIRNPK-------NRLKKILDACKNKTKCEGGDEID-VPGQDG-----EEPLKKNKG 169
            + L+++NPK          K+I +  K  + C     ++ V  + G      E  + +K 
Sbjct: 126  R-LRLQNPKFLYLARKALRKQIHEKAKKISICPYCQSLNGVVKKCGLLKLVHEKFRGSKS 184

Query: 170  GCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDC 229
               A   K  I+    + EY       D + +          LT   VL +L+RI ++D 
Sbjct: 185  TTDALMAK-HIQAYNNVLEY-------DRELESVIASGVAFILTPLDVLNLLERIPEDDV 236

Query: 230  QLLGLNPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRR 278
             LL +NP    P  ++L  LP+PP  VRPS           DDLT +L+ II  N+ +++
Sbjct: 237  CLLCMNPAMVHPRDLMLTRLPVPPLCVRPSVISELKSGTNEDDLTMKLSEIIFINDVIQK 296

Query: 279  QERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRG 338
              ++GA  H+I+E    LQ H A Y ++E  G P + Q   +  + +  RLK K+GR RG
Sbjct: 297  HRQSGAKVHMINEDWDFLQLHCALYINSETTGIPLSMQ-PKKATRGLVQRLKGKQGRFRG 355

Query: 339  NLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHP 398
            NL GKRVDFS+RTVI+PDP + IDQ+GVP  +A  LT+PE V   NI  L+ELV  GP  
Sbjct: 356  NLSGKRVDFSSRTVISPDPNLQIDQVGVPEHVAKILTFPEKVNRANIFLLRELVRNGPDT 415

Query: 399  PPGKTGAKYI-IRDDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKM 456
             PG   A ++  R+   +  LRY  +S     L+ G  VERHL D D VLFNRQPSLHK+
Sbjct: 416  HPG---ANFVEDRNGNSKRYLRYGNRSKISSELKFGDVVERHLIDDDIVLFNRQPSLHKL 472

Query: 457  SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 516
            SIM HR K++ + TFR N  V +PYNADFDGDEMN+H+PQ+ E +AE L LM     + +
Sbjct: 473  SIMAHRAKVLKHRTFRFNECVCTPYNADFDGDEMNLHLPQTLEAKAEALVLMSNKANLAT 532

Query: 517  PQSNRPVMGIVQDTLLGCRKITKRDTFIEK---DVFMNILMWWEDFDGKV--PQPTILKP 571
            P++   ++   QD + G   +T+++TF  +   +  +  ++  +D +  +  P P I+KP
Sbjct: 533  PRNGELLIAATQDFITGAYLLTQKNTFFTQAKANWLLACILAGKDANLHIDLPPPAIIKP 592

Query: 572  RPLWTGKQVFNLIIP-----KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLC 626
              LWT KQ+F++I+      K +   RT    A   +  +   D+ V I    LL+GT+ 
Sbjct: 593  MRLWTAKQIFSVILKPNKKCKIVCNLRTKG-KAYTSREEMCVNDSFVLIRNSVLLAGTMD 651

Query: 627  KKTLGT-STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTME 685
            K TLG+ S  ++++++  + G DAA   +     + +++L+   FSIG+GD       + 
Sbjct: 652  KGTLGSGSKDNILYILLRDWGEDAAATVMWRLARIASWFLMNRGFSIGLGDVTPGVGLLR 711

Query: 686  TINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSL 745
                 ++   +     IK  +   L  +PG T+ E+ E  + + L+  RD AG +  + L
Sbjct: 712  AKEKLLNAGYSKCVEYIKAMEAGKLPCQPGCTIDETLEAVILKELSVIRDHAGKACLQEL 771

Query: 746  SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESR 805
              SN+   M   GSKGSFINISQM ACVGQQ + GKR+P  F +R LP F +    P ++
Sbjct: 772  HSSNSPLIMALCGSKGSFINISQMIACVGQQAISGKRVPDKFENRALPQFERYTKIPAAK 831

Query: 806  GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVR 865
            GFVENS+   LTP EFFFH MGGREGL+DTAVKT+ETGY+QRRLVKA+ED+ V+YD TVR
Sbjct: 832  GFVENSFYSSLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKALEDLCVQYDMTVR 891

Query: 866  NSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYID 925
            NS+G++IQF YG DG+D  ++E +          +    F+  +D       Y  +E +D
Sbjct: 892  NSMGEIIQFNYGGDGLDPTYMEGK----------DCPVNFQRTLDHIRAKYPYREEEALD 941

Query: 926  DLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPR 985
             +   K   ++ + E   +  D ++   +   SG         ++++    QK F  + R
Sbjct: 942  SISVEKATDELLNTEEFGVCDDVFKFDLKNFMSGI--------VRKMALTRQK-FGYNER 992

Query: 986  RPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHR 1045
              SD+ P  +++      ERL V                 FF I                
Sbjct: 993  NLSDI-PKAIIQI-----ERLTV------------SQIVEFFQI---------------- 1018

Query: 1046 LTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1105
                           ++L++ V  G  +G +AAQSIGEP TQMTL TFH+AGV++ N+T 
Sbjct: 1019 ------------CRKKYLRAKVEAGTAVGALAAQSIGEPGTQMTLKTFHFAGVASMNITQ 1066

Query: 1106 GVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDP 1165
            GVPR++EIIN +KKI TP ++ +L+   +S  E A+ V+  +E TTL  ++E  E  + P
Sbjct: 1067 GVPRIKEIINASKKISTPIITAYLEN--DSDAEFARRVKGRIEKTTLGEISEYIEEVFLP 1124

Query: 1166 DPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQ 1225
            D    I++ DV+ +K      + D    K +    R+++N E++ D  L +  +  K   
Sbjct: 1125 DDFFIIVKLDVDRIKLL--KLEVDANSIKYTLCTARLKVNVEVVSDTILKVTPIKTK--- 1179

Query: 1226 EFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMAL-- 1283
                         NAD++   ++ +    P   +   SA +   +   +S   T+  L  
Sbjct: 1180 -------------NADRINYVLQSLKKSLPNIVIKGLSAVNRAVIHHDDSKGGTKYKLFV 1226

Query: 1284 RGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
             G NL  VM    V   +TTSN++ E+   LGIEA R+ ++ E+++V+   G  ++ RH+
Sbjct: 1227 EGYNLGEVMATNGVLGTKTTSNNIFEVFTYLGIEAARQTIISEIKMVMENHGMSIDRRHI 1286

Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
             +L D MT RG ++ ITRHG+ +     +   SFE T D L DAA + ++D + GV+E+I
Sbjct: 1287 MLLADLMTSRGEVLGITRHGLVKMKESVLNLASFERTADHLFDAAYYGQTDAITGVSESI 1346

Query: 1404 MLGQLAPIGTG 1414
            ++G    +GTG
Sbjct: 1347 IMGLPVSVGTG 1357


>gi|410079408|ref|XP_003957285.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
 gi|372463870|emb|CCF58150.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
          Length = 1462

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/1474 (35%), Positives = 777/1474 (52%), Gaps = 131/1474 (8%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQI---EHGETTERGKPKPGGLSDPRLGTIDRKMKCETCT 70
            K+  ++F  LS  +I   S V+I   +  +  +  K K  G  DPR+G     + CETC 
Sbjct: 12   KISGIEFSALSASDIVAQSEVEISSRDLFDLEQNRKQKENGALDPRMGVSSSSLTCETCH 71

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD-----HKFKQAL 125
             N+A C GHFGH++LA P+FH+G+ K  + I++++C NCS +L  ++D     H+ + + 
Sbjct: 72   GNLASCHGHFGHIKLALPVFHVGYFKATIQILQAICKNCSSVLLSDEDKKKYLHELRTSG 131

Query: 126  KIRNPKNR--LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
            +I N K    LKK++D CK + +C     +     +G   +KK   G G    K+  +  
Sbjct: 132  RIDNLKKMGILKKVMDQCKKQRRC-----LHCGALNG--VVKKAAAGSGTASLKIIHDTF 184

Query: 184  KMIAEYKAQRKKN---------DDQEQLPEPVER-KQTLTAERVLGVLKRISDEDCQLLG 233
            + + +     K N             +L   V+R    L   + L + K++  EDC+LLG
Sbjct: 185  RWVGKKSTPEKDNWIGDWNEVLSHHPELERFVKRCTDDLNPLKTLNLFKQVRPEDCELLG 244

Query: 234  LNP--KYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQE 280
            ++   K  RP+  I + LP PP  +RPS           DDLT +L  I+  +  ++   
Sbjct: 245  IDSTVKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTIKLTEIVWTSSLIKAGL 304

Query: 281  RNGAPAHIISEFAQLLQFHIATYFDNE------LPGQPRATQRSGRPIKSICSRLKAKEG 334
              G   + + E    LQ  +A Y + +      LPG      +  +PI+  C RLK K+G
Sbjct: 305  EKGISINNMMEHWDYLQLTVAMYINADSVNPAMLPGASSGGGKV-KPIRGFCQRLKGKQG 363

Query: 335  RIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEY 394
            R RGNL GKRVDFS RTVI+PDP ++ID++ VP  +A  LTYPE VT YN ++L+ELV  
Sbjct: 364  RFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRKKLQELVMN 423

Query: 395  GPHPPPGKTGAKYIIRDDGQ-RLDLRY---LKKSSDHHLELGYKVERHLNDGDFVLFNRQ 450
            GP+  PG   A Y+++ + + R +LRY   LK + +  L+ G  VERHL DGD VLFNRQ
Sbjct: 424  GPNIHPG---ANYLLKKNEEARRNLRYGDRLKLAKN--LQYGDIVERHLEDGDVVLFNRQ 478

Query: 451  PSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 510
            PSLH++SI+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V
Sbjct: 479  PSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGV 538

Query: 511  PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED----FDGKVPQP 566
               +++P+S  P++   QD + G   I+ +D+F ++  F  +L    D    FD  +P P
Sbjct: 539  KNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATFTQLLSMMSDGNLQFD--IPPP 596

Query: 567  TILKPRPLWTGKQVFNLII------PKQINL-FRTAAWHADNDKGI---LTAGDTLVRIE 616
             I+KP  LWTGKQ+F+L+I      P  INL  +   +     K +   ++  D  V I 
Sbjct: 597  AIMKPYYLWTGKQLFSLLIKPNHKSPVVINLDAKNKVYIPPKSKSLPNEMSRNDGFVIIR 656

Query: 617  KGELLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 675
               +LSG + K  LG     S+ + I  + GP  A   +     L   +L    FSIGI 
Sbjct: 657  GSNILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMSKLCARFLGNRGFSIGIS 716

Query: 676  D-TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR 734
            D T AD   ++   + +  A     +LI       LE +PG    E+ E K+  +L+  R
Sbjct: 717  DVTPADDLKIKK-EELVEIAYAKCDDLIDSYNKGKLETQPGCNEEETLEAKIGGLLSKVR 775

Query: 735  DEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPH 794
            +E G      L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPH
Sbjct: 776  EEVGDVCINELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPH 835

Query: 795  FTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAME 854
            F K+   P+S+GFV NS+  GLTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++E
Sbjct: 836  FPKNSKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLE 895

Query: 855  DIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFR--FEMDEE 912
            D+  +YD TVR S   ++QF YG DG+D + +E      +   +S +D A    F  +E 
Sbjct: 896  DLSCQYDNTVRTSSNGIVQFTYGGDGLDPMEMEGSA-QPVNFNRS-WDHALNITFNNNER 953

Query: 913  NWNPNYMLQEYIDDLKTIKELRDVFD---AEVQKLEADRYQLATEIATSGDSSWPLPVNL 969
               P  ++++  + L  ++E    +D    EV K + D+ + A +     D         
Sbjct: 954  GLLPYQVMKKTNEVLNPLEERLVRYDNLGNEVMKEDLDKLEYADQFDAERD--------- 1004

Query: 970  KRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNI 1029
                    KT +   +  SD H   V ++   L+  L   PGE+  S+   + AT     
Sbjct: 1005 ------FYKTLRSYIQSKSD-HLAHVRKSRGLLE--LLSEPGEELQSLHPDERAT----- 1050

Query: 1030 LLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1089
                  +   V +  ++T +A    +    S++ ++ V PG  +G + AQSIGEP TQMT
Sbjct: 1051 ----DVSRSSVDQLCKITEKAVLKFLEIALSKYRKARVEPGTAVGAIGAQSIGEPGTQMT 1106

Query: 1090 LNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCALE 1148
            L TFH+AGV++ NVTLGVPR++EIIN +K I TP ++  L   VN+  ER A+ V+  +E
Sbjct: 1107 LKTFHFAGVASMNVTLGVPRIKEIINASKTISTPIINAVL---VNNNDERAARVVKGRVE 1163

Query: 1149 YTTLRSVTEATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNRE 1207
             T L  V    +  Y  +     I  D+  + K   E+  EDIA        L+I+ +  
Sbjct: 1164 KTMLSDVAYYIQDVYKDNLSFLQIRIDLNTIEKLQLELTIEDIAVALTKAPKLKIQAS-- 1221

Query: 1208 MMVDKKLSMAAVAEKINQEF-----DDDLTCIFNDDNADKLILRIRIMNDEAPKGELND- 1261
                  +S+A   + I   F        ++    D + + +  R++ +    P   +   
Sbjct: 1222 -----DVSIAGDDKVIVNVFPEGSKSKSISTSAKDPSENDVFYRMQQLRRALPHIVVKGL 1276

Query: 1262 -ESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
             E A   +    I  +   E+ + G  L  VMC + V   +T +NH++E+  VLGIEA R
Sbjct: 1277 PEIARAVI---NIRDDGKRELLVEGYGLREVMCTDGVIGSKTVTNHVLEVSSVLGIEAAR 1333

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             +++ E+   +S  G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T
Sbjct: 1334 SSIIGEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKT 1393

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
             D L DAA + + D + GV+E I+LGQ   IGTG
Sbjct: 1394 TDHLFDAAFYMKKDNVEGVSECIILGQTMSIGTG 1427


>gi|448115320|ref|XP_004202788.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
 gi|359383656|emb|CCE79572.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
          Length = 1454

 Score =  779 bits (2011), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1466 (34%), Positives = 779/1466 (53%), Gaps = 112/1466 (7%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCT 70
            +++ VQFG LS  +I   S V+++  +    E+G+  K  G  D R+G      +C TC 
Sbjct: 12   RIKGVQFGALSASDIIAQSEVEVQTRDLYDLEKGRTAKESGALDTRMGISSNSSECSTCH 71

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIRN 129
             N+A C GHFGH+ LA P+FH+G+ K ++S+++S+C NC  IL DE   + F   L+  N
Sbjct: 72   GNLASCHGHFGHIRLALPVFHVGYFKNIMSVLQSICKNCGAILLDETTRRSFLNELRRPN 131

Query: 130  PKNR-----LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
              N      LK+IL+ CK + +C   + I+         +KK   G G    K+  +  +
Sbjct: 132  LDNLKRMKILKRILEQCKKQRRCVKCNHIN-------GVVKKAASGSGPAALKIVHDTFR 184

Query: 185  MIA------------EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLL 232
             I             E+     +N + E+  + V     L   +VL + K+I   DC+LL
Sbjct: 185  WIGKKPTPEKALWNEEFDEVFARNPELEKFSKRV--YDDLNPLKVLNLFKQIEPADCELL 242

Query: 233  GLNP-KYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERN 282
            G++P +  RP+  I + LP PP  +RPS         DDLT +L  I+  +  +R     
Sbjct: 243  GIDPARGGRPEMYIWRYLPAPPVCIRPSVMMDTQSNEDDLTVKLTEIVWTSSLIRAGIEK 302

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQP----RATQRSGRPIKSICSRLKAKEGRIRG 338
            G   + + E    LQ  +A Y +++             +S +PI+  C RLK K+GR RG
Sbjct: 303  GITINNLMEQWDYLQLSVAMYINSDAANSAFLPSSGGSKSAKPIRGFCQRLKGKQGRFRG 362

Query: 339  NLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHP 398
            NL GKRVDFS RTV++PDP + ID++ VP  +A  LTYPE  T YN ++L+ L+  GP+ 
Sbjct: 363  NLSGKRVDFSGRTVVSPDPNLRIDEVAVPDRVAKVLTYPEMCTRYNRKKLQRLILNGPNT 422

Query: 399  PPGKTGAKYIIR-DDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKM 456
             PG   A Y+++ ++  + +LR+  +     +L +G  VERH+ DGD VLFNRQPSLH++
Sbjct: 423  YPG---ANYLMKQNEAAKRNLRFGDRVKLAKNLHIGDVVERHIEDGDVVLFNRQPSLHRL 479

Query: 457  SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 516
            SI+ H  K+ P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   +++
Sbjct: 480  SILSHFAKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKNNLLT 539

Query: 517  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK--VPQPTILKPRPL 574
            P+S  P++   QD + G   I+ +D+F ++   + +L    D + +  +P P I KP  L
Sbjct: 540  PKSGEPIIAATQDFITGSYLISHKDSFYDRAALVQMLSMMSDANVQYDIPPPAIFKPVML 599

Query: 575  WTGKQVFNLII-PKQ-----INLFRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGTL 625
            WTGKQ+F+L+I P +     INL           KG    ++  D  V I   ++LSG +
Sbjct: 600  WTGKQLFSLLIRPNKKSKVLINLDAKNKTFIPPLKGFPNEMSQNDGFVVIRGSQILSGVM 659

Query: 626  CKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTM 684
             K  LG     S+ + I  + GPD A   +     L   ++    FSIGI D I  ++  
Sbjct: 660  DKSLLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARFMGNRGFSIGINDVIPRSELK 719

Query: 685  ETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKS 744
            +     + +A      LI       LE +PG    ++ E K+  +L+  R++ G    K 
Sbjct: 720  QKKELMVEQAYLKCDELIDSYNRGKLETQPGCNEEQTLEAKIGGLLSKVREQVGEICIKE 779

Query: 745  LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 804
            L  +N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHFTK+   P+S
Sbjct: 780  LDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNSKTPQS 839

Query: 805  RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 864
            +GFV NS+  GL+P EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD TV
Sbjct: 840  KGFVRNSFFSGLSPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDNTV 899

Query: 865  RNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK-KSEFDKAFR--FEMDEENWNPNYMLQ 921
            RNS   V+QF YG DG+D + +E    D+  +    ++D AF   F++ +    P  +L 
Sbjct: 900  RNSSNGVVQFTYGGDGLDPLDMEG---DARPVNFNRQWDHAFNVTFDVKDRGLKPYEILN 956

Query: 922  --EYIDDLKTIKELRDVFDAEVQKLE-ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQK 978
               Y+ +    K +R     ++  LE +D+ + A E             + +R+ +N+ +
Sbjct: 957  AVNYVLNPLEKKLVRYSNSGKILSLEDSDKIEYADE------------KDAERIFYNSIR 1004

Query: 979  TFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASK 1038
             F             E   ++ +++ER  + P     S+ +  +  +          A  
Sbjct: 1005 EF-----------ITEKAVSLAQIRERRNLKP-----SLRSPNDDEMDVVDDEACLNAVN 1048

Query: 1039 RVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1098
            ++LK   ++ +A    + +   ++ ++ V PG  +G + A SIGEP TQMTL TFH+AGV
Sbjct: 1049 QLLK---ISEKAIRSFLDQCVYKYFRAKVEPGTAVGAIGAHSIGEPGTQMTLKTFHFAGV 1105

Query: 1099 SAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCALEYTTLRSVTE 1157
            ++ NVTLGVPR++EIIN +K I TP ++  L   VN   ER A+ V+  +E T L  V  
Sbjct: 1106 ASMNVTLGVPRIKEIINASKVISTPIINSVL---VNDDDERAARVVKGRIEKTLLEDVAF 1162

Query: 1158 ATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSM 1216
              E  Y  +     I+ D++ + K   E+  E IA    +   L+I      +  K    
Sbjct: 1163 YIEDVYKENMAYISIKVDLDTIEKLQLELTIEQIARAIANAPKLKISAADVAISGKDKIN 1222

Query: 1217 AAVAEKINQEFDDDLTCIFND----DNADKLILRIRIMNDEAPKGELNDESAEDDVFLKK 1272
              V  K N+  D+ +  I  D    D  + L  R +++    P+  +N  S      +  
Sbjct: 1223 VLVTLKENKA-DNLMRNIAADYGSTDMNNSLFFRAQVLKRALPQICVNGLSDISRAVI-N 1280

Query: 1273 IESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
            I  +   E+ + G  L  VM  + V   +TT+NH++EI +VLGIEA R +++ E+   ++
Sbjct: 1281 IRDDGKKELLVEGYGLKNVMSTDGVVGTKTTTNHVLEIFQVLGIEAARASIIKEIDYTMT 1340

Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
              G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T D L DA+ + +
Sbjct: 1341 NHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMK 1400

Query: 1393 SDYLRGVTENIMLGQLAPIGTGDCSL 1418
             D + GV+E I+LGQ   IGTG   L
Sbjct: 1401 EDKIEGVSECIILGQTMNIGTGAFKL 1426


>gi|31127024|gb|AAF26639.2|AF138989_1 RNA polymerase II largest subunit [Limnadia lenticularis]
          Length = 624

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/628 (60%), Positives = 478/628 (76%), Gaps = 8/628 (1%)

Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
           SARTVITPDP + IDQ+GVP SIA NLT+PE VTP+NIE+++ELV  G    PG   AK+
Sbjct: 1   SARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIEKMQELVRRGNSQYPG---AKF 57

Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
           IIRD+G R+DLR+  KSSD HL+ GYKVERH++DGD V+FNRQP+LHKMS+MGHR+K++P
Sbjct: 58  IIRDNGDRIDLRFNPKSSDLHLQCGYKVERHVHDGDLVVFNRQPTLHKMSMMGHRVKVLP 117

Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
           +STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAE+  + + P+ I++PQ+N+PVMGIV
Sbjct: 118 WSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEIENIHVTPRQIITPQANKPVMGIV 177

Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
           QDTL   RK+TKRD F+EK+  MN+LM+   +DGK+PQP I+KPRPLWTGKQ+F LIIP 
Sbjct: 178 QDTLCAVRKMTKRDVFLEKEQMMNLLMFLPTWDGKMPQPAIIKPRPLWTGKQLFTLIIPG 237

Query: 588 QINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            +N+ RT + H D+ D G    ++ GDT V +E GEL+ G LCKKTLG S  SL+H+I+ 
Sbjct: 238 NVNMIRTHSTHPDDEDDGPYKWISPGDTKVIVENGELIMGILCKKTLGASAASLLHIIFM 297

Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
           E+G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I  TI KAK +V  +I+
Sbjct: 298 ELGHEVCGRFYGNIQTVVNNWLLYEGHSIGIGDTIADPQTYLDIQATIKKAKEDVIEVIQ 357

Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
           ++ +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV AGSKGS 
Sbjct: 358 KSHNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSN 417

Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
           INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+F
Sbjct: 418 INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYF 477

Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
           HAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQF YGEDG+  
Sbjct: 478 HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQFRYGEDGLAG 537

Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
             +E Q+  ++K+    F+K F+F+   E +      +E   +L +  E+    + E ++
Sbjct: 538 ESVEFQSQPTIKLSNKAFEKKFKFDPSNERYVRRIFNEEVAKELSSSGEVLTEIEREWEQ 597

Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKR 971
           L  DR  L T I  +G++   LP NL+R
Sbjct: 598 LCKDREALRT-IFPTGENKVVLPCNLQR 624


>gi|83320470|gb|ABC02862.1| RNA polymerase II largest subunit, partial [Phycomyces
           blakesleeanus]
          Length = 564

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/565 (65%), Positives = 445/565 (78%), Gaps = 13/565 (2%)

Query: 248 VLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
           VLP+PPP VRPS          DDLTH+L+ I++ N N+RR E  GAP H++ EF  LLQ
Sbjct: 3   VLPVPPPQVRPSIQMDGTSRGEDDLTHKLSDILKANANVRRCESEGAPVHVVQEFEALLQ 62

Query: 298 FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
           FHIATY DN++ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP
Sbjct: 63  FHIATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDP 122

Query: 358 TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
            +++D++GVP SIA NLTYPE VTPYNI++L+ LV  GP   PG   AKY+IRD+G+R+D
Sbjct: 123 NLSLDEVGVPRSIARNLTYPEIVTPYNIDKLQVLVRNGPLEHPG---AKYVIRDNGERID 179

Query: 418 LRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 477
           LRY K++ +  L+ GY+VERH+NDGD V+FNRQPSLHKMS+MGHR+++MPYSTFRLNLSV
Sbjct: 180 LRYRKRAGEIPLQYGYRVERHINDGDVVIFNRQPSLHKMSMMGHRVRVMPYSTFRLNLSV 239

Query: 478 TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
           TSPYNADFDGDEMN+HVPQS ETRAEV E+ MVPK IVSPQSN+PVMGIVQDTL G RK 
Sbjct: 240 TSPYNADFDGDEMNLHVPQSLETRAEVTEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKF 299

Query: 538 TKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAW 597
           T RD FI KDV MNI+MW  D+DG +P P ILKP+P+WTGKQ+ +++IP+ IN     + 
Sbjct: 300 TLRDCFITKDVVMNIVMWVPDWDGYIPPPAILKPKPMWTGKQIVSMVIPRGINCQTFHST 359

Query: 598 HADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHT 657
           H D +   ++ GDT V IE GELL G +CKKT+GT++G LIH I  E+GP+AA+ FL  T
Sbjct: 360 HPDKENTYISPGDTRVVIENGELLCGIVCKKTVGTTSGGLIHTIVNELGPEAAKNFLTGT 419

Query: 658 QWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRT 717
           Q +VNYWLLQN FSIGIGDTIAD  TM TI D IS AK  V  +I  AQ   LE +PG T
Sbjct: 420 QQVVNYWLLQNGFSIGIGDTIADKVTMATITDIISHAKQRVHEIIITAQQDKLEVQPGMT 479

Query: 718 MMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQN 777
           + ESFE KVNQ LN ARD+AG  AQ +L + NN+K MV AGSKGSFINISQM+ACVGQQN
Sbjct: 480 LRESFEAKVNQSLNKARDDAGKMAQNNLKDDNNVKQMVIAGSKGSFINISQMSACVGQQN 539

Query: 778 VEGKRIPFGFVDRTLPHFTKDDYGP 802
           VEGKRIPFGF +RTLPHF+KDD+ P
Sbjct: 540 VEGKRIPFGFKNRTLPHFSKDDHTP 564


>gi|406863545|gb|EKD16592.1| DNA-directed RNA polymerase III [Marssonina brunnea f. sp.
            'multigermtubi' MB_m1]
          Length = 1965

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1461 (34%), Positives = 764/1461 (52%), Gaps = 120/1461 (8%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHG---ETTERGKPKPGGLSDPRLGTIDRKMKCETCT 70
            K   ++FGI S  +I   +V+++ +    +  +  KP P G  DPRLGT  +   C TC 
Sbjct: 514  KFSSLKFGIQSNTQIVNQAVLEVSNTLLYDVEKMRKPMPNGPLDPRLGTSSKNGTCGTCG 573

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKIL-ADEDDHKFKQALK--- 126
              +A C GHFGH+ LA P+FHIG++K  +  ++ +C  C+++L  D +   F Q L+   
Sbjct: 574  DILANCNGHFGHIRLALPVFHIGYLKLTMKFLQEICKECARVLLTDTERRSFLQRLRKPG 633

Query: 127  IRN-PKNRL-KKILDACKNKTKCEGGDEIDVPGQDGEEPLKK---------NKGGCGAQQ 175
            I N  + R+ KKI + C+    C   D ++  GQ  +  + K         NK     + 
Sbjct: 634  IDNLERTRICKKINEQCRKARTCPYCDAVN--GQIRKVGIVKLAHDKYQAFNKSTAQKKV 691

Query: 176  PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
            P  ++  +     ++  +K N + E+  +       L A RVL + K I+  DC+LLGLN
Sbjct: 692  PPPSL--LTYQKSFEEAKKANPELEKHMKKA--MDDLNALRVLNLFKMITPSDCELLGLN 747

Query: 236  PKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPA 286
            P   RP+  I Q +P PP  +RPS         DDLT +L  I++ +  +R   + G P 
Sbjct: 748  PLEGRPEMFIWQFVPAPPICIRPSVAQENASTEDDLTTKLGEIVQVSSLIRAALQRGQPI 807

Query: 287  HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
              I E    LQ  IA Y ++++PG     + +G+P++  C RLK K+GR RGNL GKRVD
Sbjct: 808  QTIVEQWDFLQTAIALYVNSDVPGL--QDKGNGKPMRGFCQRLKGKQGRFRGNLSGKRVD 865

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FSARTVI+PDP + IDQ+ VP  +A+N+TYPE     NIE+L+ LV  GP   PG    +
Sbjct: 866  FSARTVISPDPNLGIDQVAVPILVAMNMTYPERAQKNNIEKLRRLVRNGPSKHPG--AQQ 923

Query: 407  YIIRDDGQRLDLRYLKKSSD-HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
             I +    ++ L++ ++  +  HL++G  VERHL DGD +LFNRQPSLHK+SIM H  KI
Sbjct: 924  IIKKGSDHKISLKFARREIEAQHLKIGDVVERHLEDGDIILFNRQPSLHKLSIMSHYAKI 983

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
             P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E R E + LM V   + +P++  P++ 
Sbjct: 984  RPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAINLMGVKNNLSTPKNGEPIIS 1043

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK--VPQPTILKPRPLWTGKQVFNL 583
              QD +     ++ ++ F ++  F N+ M+  D +    VP P I+KP+ LWTGKQVF+ 
Sbjct: 1044 ATQDFITAAYLLSSKENFFDRKTFTNLCMYMVDGNTHLDVPPPAIIKPQALWTGKQVFSA 1103

Query: 584  II------PKQINLFRTAAWHA-------DNDKGILTAGDTLVRIEKGELLSGTLCKKTL 630
            ++      P ++NL      +        D D       D  + +   E++ G + K T+
Sbjct: 1104 LMRPNKKSPVKVNLDAKCRDYQFVPGQCPDMD-----INDGWLVVRNSEVMCGRMDKTTV 1158

Query: 631  GTST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETIND 689
            G+    S+ ++I  + GPD A   +     +   +L    FSIGI D           + 
Sbjct: 1159 GSGKKDSIFYIILRDFGPDEAVLAMNRLSKISARYLTNMGFSIGISDVYPSKDLTAAKSR 1218

Query: 690  TISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESN 749
             + KA    ++LI+Q Q+ +L+   G  M E+ EN ++ VL+  R  AG     +LS+ N
Sbjct: 1219 LVLKAYAQSEDLIQQFQNGTLQKSTGCNMEETLENVISGVLSKVRQSAGEYCISTLSKWN 1278

Query: 750  NLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVE 809
            +   M  +GSKGS IN++QM A VGQQ + GKR+  GF DRTLPHF K+   P S+GFV 
Sbjct: 1279 SPLIMAKSGSKGSTINVAQMVAVVGQQIIGGKRVQDGFQDRTLPHFPKNARQPPSKGFVR 1338

Query: 810  NSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLG 869
            NS+  GL P EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD TVRNS G
Sbjct: 1339 NSFFTGLRPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRNSSG 1398

Query: 870  DVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKT 929
             V+QF +G D +D V +E   +     +     +A  +  D+ +  P  +    ID L  
Sbjct: 1399 IVVQFQFGADKLDPVDMEGSAVPVHFQRTWTHAEALTWNNDDRSLLPYEITARCIDLLAQ 1458

Query: 930  IKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSD 989
                        QK   DR  L  +     D +   P+N     + + + F V   +  D
Sbjct: 1459 ------------QKSGYDRQDLFGKPLAYDDDT---PINTDE--FESAREFLVTITKFVD 1501

Query: 990  MHPMEVVEAVDKLQ-ERLKVVPG-----EDPLSVEAQKNATLFFNILLRSTFASKRVLKE 1043
                 + +A  K+     K  PG     +D    + +K+   + N + + +  + ++   
Sbjct: 1502 GLASRLAKARQKVGLHDFKDPPGLGTPQDDSKDDQRKKD---YLNQVAKVSLPTLKMF-- 1556

Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
                       I    S++ ++ V PG  +G V AQSIGEP TQMTL TFH+AGV+  ++
Sbjct: 1557 -----------ITLCLSKYAKAHVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSI 1605

Query: 1104 TLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWY 1163
            T GVPR++EIIN +K I TP +S  L+       + A+ V+  +E T +  V    E  +
Sbjct: 1606 TQGVPRIKEIINASKVISTPVISCPLEN--EREIQVARIVKARIEKTYISDVIRFIEDMW 1663

Query: 1164 DPDPMGTIIEEDVEFVKSY-YEMPDEDIAPEKISPWLLRIELNREMMV---DKKLSMAAV 1219
                    +  D++++      +  EDIA          I +N+++ +   D  +S   +
Sbjct: 1664 SAKAATLCLSVDLDYLNEMQLGITVEDIAQT--------ICMNKKLKIRGTDVTVSHECI 1715

Query: 1220 AEKINQEFDDDLTC------IFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKI 1273
               +  E   +L         + DD +  ++LR+  +    P   ++         ++  
Sbjct: 1716 FVNVTSESGGNLGARGAKNKAYVDDGSSDVLLRVNFLKRTLPTITISGYPDATRAIVQVS 1775

Query: 1274 ESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
            E   +  + + G  L A M  E V  RR TSN ++E+  VLGIEA R  +  E+  V+  
Sbjct: 1776 EDETVHTVLVEGYGLRACMTTEGVVGRRVTSNSIMEVNTVLGIEAARSTIATEIGAVMGD 1835

Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
             G  ++ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T D L DAA   ++
Sbjct: 1836 MG--IDPRHMQLLADVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTPDHLFDAAAGMKT 1893

Query: 1394 DYLRGVTENIMLGQLAPIGTG 1414
            D + GV+E I++GQ   +GTG
Sbjct: 1894 DLIEGVSECIIMGQTMSVGTG 1914


>gi|344305554|gb|EGW35786.1| DNA-directed RNA polymerase III subunit C1 [Spathaspora passalidarum
            NRRL Y-27907]
          Length = 1445

 Score =  776 bits (2005), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/1478 (34%), Positives = 783/1478 (52%), Gaps = 146/1478 (9%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCTA 71
            ++ ++F  LS  +I   S V+++  +    E+G+ PK  G  D R+G      +C TC  
Sbjct: 13   IKGLEFSALSAKDIVAQSEVEVQTRDLYDLEKGRTPKVQGALDTRMGISSNASECSTCHG 72

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIRNP 130
            N+A C GHFGH+ LA P+FH+G+ K+++ +++ +C NCS +L DE   + +   L+  N 
Sbjct: 73   NLASCHGHFGHIRLALPVFHVGYFKSIIQVLQCICKNCSAVLLDEQAKRTYLNDLRKPNI 132

Query: 131  KNR-----LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKM 185
             N      L+K+LD CK + +C   + ++         +KK   G G    K+  +  + 
Sbjct: 133  DNLRRMKILRKVLDQCKKQRRCLKCNHVN-------GVVKKAASGAGPAALKIVHDTFRW 185

Query: 186  IAEYKAQRKKNDDQE---------QLPEPVER-KQTLTAERVLGVLKRISDEDCQLLGLN 235
            I +     K+  DQE         +L    +R  + L   + L + K+IS  DC+L+G++
Sbjct: 186  IGKKPTPEKELWDQEFNLVFDRNPELERFAKRVHEDLNPLKTLNLFKQISPSDCELIGID 245

Query: 236  -PKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAP 285
              +  RP+  I + LP PP  +RPS         DDLT +L  I+  +  +R     G  
Sbjct: 246  SARGGRPEMYIWRYLPAPPVCIRPSVMMDAQSNEDDLTVKLTEIVWTSSLIRAGIEKGIS 305

Query: 286  AHIISEFAQLLQFHIATYFDNE-----LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 340
             + + E    LQ  +A Y +++     L     A  +S +PI+  C RLK K+GR RGNL
Sbjct: 306  INNLMEQWDYLQLSVAMYINSDSANPALLPNAGAGAKSAKPIRGFCQRLKGKQGRFRGNL 365

Query: 341  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 400
             GKRVDFS RTVI+PDP + ID++ VP  +A  LTYPE  T YN ++L++L+  GP   P
Sbjct: 366  SGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNFKKLQKLIRAGPDVHP 425

Query: 401  GKTGAKYIIR-DDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSI 458
            G   A YI++ ++  + +LR+  +     +L +G  VERH+ DGD VLFNRQPSLH++SI
Sbjct: 426  G---ANYIMKQNELAKRNLRFGNREILAKNLRIGDVVERHIEDGDVVLFNRQPSLHRLSI 482

Query: 459  MGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 518
            + H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   +++P+
Sbjct: 483  LSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTPK 542

Query: 519  SNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK--VPQPTILKPRPLWT 576
            S  P++   QD + G   I+ +D+F ++  F+ +L    D D +  +P PTI KP  LWT
Sbjct: 543  SGEPIIAATQDFITGSYLISHKDSFFDRASFVQLLSMMSDADVQFDLPPPTIFKPVMLWT 602

Query: 577  GKQVFNLII-PKQ-----INLFRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGTLCK 627
            GKQVF+L+I P +     INL           KG+   ++  D  V I   ++LSG + K
Sbjct: 603  GKQVFSLLIKPNKKSNVIINLDAKNKTFIPPAKGLPSEMSPNDGFVIIRGSQILSGLMDK 662

Query: 628  KTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMET 686
             TLG     S+ + I  + GP  A   +     L   +L    FSIGI D   + K  + 
Sbjct: 663  STLGDGKKHSVFYTILRDYGPQEAASAMNRMAKLCARYLGNRGFSIGINDVTPETKLKQK 722

Query: 687  INDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLS 746
                + +A      LI       LE +PG    ++ E K+  +L+  R+E G    + L 
Sbjct: 723  KELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEECIRELD 782

Query: 747  ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRG 806
              N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHFTK+   P+S+G
Sbjct: 783  SMNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQSKG 842

Query: 807  FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRN 866
            FV NS+  GLTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD TVRN
Sbjct: 843  FVRNSFYSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDNTVRN 902

Query: 867  SLGDVIQFLYGEDGMDSVWIESQTLDSLKMK-KSEFDKAFR--FEMDEENWNPNYMLQEY 923
            S   ++QF YG DG+D   +E    D+  +    ++D A+   ++ DE    P Y ++  
Sbjct: 903  SSNGIVQFTYGGDGLDPYDMEG---DAKPVNFNRQWDHAYNLTYDGDETGLLP-YEIKRL 958

Query: 924  IDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIW-NAQKTFKV 982
            +D + T  E + +    + +  AD  Q   E     D+      +L+  +   A+K  ++
Sbjct: 959  VDSILTPLESKLIRYDNLGRELADADQDRIEYIDQNDAEREFYQSLRDFLGKKAEKLARL 1018

Query: 983  DPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLK 1042
              R    + P        K++  + V   ED + + +        N LL           
Sbjct: 1019 --REAKGLQPF-----FTKIESEMSV--DEDEVKLNS-------INQLL----------- 1051

Query: 1043 EHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKN 1102
              +++ +  E  + +   ++ ++ V PG  +G + AQSIGEP TQMTL TFH+AGV++ N
Sbjct: 1052 --KISSKTVEKFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMN 1109

Query: 1103 VTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKE-RAKNVQCALEYTTLRSVTEATEV 1161
            VTLGVPR++EIIN +K I TP ++  L   VN   E  A+ V+  +E T L  V    E 
Sbjct: 1110 VTLGVPRIKEIINASKTISTPIINAVL---VNDDDEIAARVVKGRIEKTLLEDVAFFIED 1166

Query: 1162 WYDPDPMGTIIEEDVEFV-KSYYEMPDEDI------APE-KISPWLLRIELNREMMV--- 1210
             Y  +     I+ D+E + K   E+  ++I      AP+ KI+P  + +     + V   
Sbjct: 1167 VYKDNLAYLSIKIDLETIDKLQLELTIDNIVRAIQNAPKLKITPGDVSVSGKDRVNVLVN 1226

Query: 1211 --DKKLSMAAVAEKIN------QEFDDDL--TCIFNDDNADKLILRIRIMNDEAPKGELN 1260
              +K  S+ + AE  N      Q+    L   CI    N  + ++ IR   D++ K    
Sbjct: 1227 LKEKTDSLKSQAETKNALFFRMQQLKRALPSICIKGLPNIFRAVINIR---DDSKK---- 1279

Query: 1261 DESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVR 1320
                               E+ + G  L  VM  + V   +TT+NH++E+ E+LGIEA R
Sbjct: 1280 -------------------ELLVEGYGLKDVMSTDGVVGTKTTTNHVLEVFEILGIEAAR 1320

Query: 1321 RALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1380
             +++ E+   +S  G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T
Sbjct: 1321 SSIIKEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKT 1380

Query: 1381 VDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSL 1418
             D L DAA F ++D + GV+E I+LGQ   IGTG   L
Sbjct: 1381 TDHLFDAAFFMKNDKIEGVSECIILGQTMSIGTGSFKL 1418


>gi|444314063|ref|XP_004177689.1| hypothetical protein TBLA_0A03720 [Tetrapisispora blattae CBS 6284]
 gi|387510728|emb|CCH58170.1| hypothetical protein TBLA_0A03720 [Tetrapisispora blattae CBS 6284]
          Length = 1458

 Score =  775 bits (2002), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/1513 (34%), Positives = 794/1513 (52%), Gaps = 185/1513 (12%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQI--------EHGETTERGKPKPGGLSDPRLGTIDRKMK 65
            K+  ++F  LS  +I   S V I        EHG       PK  G  D R+G     ++
Sbjct: 12   KISGLEFSALSAADIVAQSEVAITTRDLYDLEHGRA-----PKKSGALDQRMGVSSSNLE 66

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKIL-ADEDDHKFKQA 124
            CETC  N+A C GHFGH++LA P+FH+G+ K  + I++++C +C+ +L +DED   F   
Sbjct: 67   CETCHGNLASCHGHFGHIKLALPVFHVGYFKATIQILQAICKSCAAVLLSDEDKRNFLSE 126

Query: 125  LK---IRNPKNR--LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
            L+   I N K    LKKILD CK + +C     +   G +G   +KK   G G+   K+ 
Sbjct: 127  LRRPGIDNLKRMGILKKILDQCKKQRRC-----LHCGGLNG--VVKKAAAGGGSASLKII 179

Query: 180  IEGMKMIAEYKAQRKKN---DDQE------QLPEPVERKQT-LTAERVLGVLKRISDEDC 229
             +  + + + +   K +   D QE      +L   V+R    L   + L + K+I  EDC
Sbjct: 180  HDTFRWVGKKQTPEKDSWVGDWQEVLSHNPELERFVKRAMDDLNPLKTLNLFKQIKPEDC 239

Query: 230  QLLGLNP--KYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENL 276
            +LLG++   K  RP+  I + LP PP  +RPS           DDLT +L  ++  +  +
Sbjct: 240  ELLGIDSTSKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEVVWTSSLI 299

Query: 277  RRQERNGAPAHIISEFAQLLQFHIATYFDNE------LPGQPRATQRSGRPIKSICSRLK 330
            +     G   + + E    LQ  +A Y +++      +PG   +T    +PI+  C RLK
Sbjct: 300  KAGLEKGISINNMMEHWDYLQLSVAMYINSDSVNPLLMPGA--STGNKVKPIRGFCQRLK 357

Query: 331  AKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKE 390
             K+GR RGNL GKRVDFS RTVI+PDP ++ID++ VP  +A  LT+PE VT YN  +L+ 
Sbjct: 358  GKQGRFRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPERVTRYNKRKLQA 417

Query: 391  LVEYGPHPPPGKTGAKYIIRDDGQ-RLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFN 448
            LV  GP+  PG   A Y+++ D + R +LRY  K     +L++G  VERHL DGD VLFN
Sbjct: 418  LVLNGPNVHPG---ANYLLKKDEEARRNLRYGDKVKLAKNLQIGDVVERHLEDGDVVLFN 474

Query: 449  RQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELM 508
            RQPSLH++SI+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM
Sbjct: 475  RQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLM 534

Query: 509  MVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED----FDGKVP 564
             V   +++P+S  P++   QD + G   I+ +D+F ++  F  +L    D    FD  +P
Sbjct: 535  GVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATFTQLLSMMCDGNLQFD--IP 592

Query: 565  QPTILKPRPLWTGKQVFNLII------PKQINL-FRTAAWHADNDKGI---LTAGDTLVR 614
             P I+KP  LWTGKQ+F+L+I      P  IN+  +   +    DK +   ++  D  V 
Sbjct: 593  PPAIMKPCYLWTGKQLFSLLIKPNSNSPVVINVDAKNKVFKPPKDKSLPSEMSPNDGFVV 652

Query: 615  IEKGELLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIG 673
            I   ++LSG + K  LG     S+ + I  + GP  A   +     L   +L    FSIG
Sbjct: 653  IRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAATAMNRMAKLCARFLGNRGFSIG 712

Query: 674  IGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTA 733
            I D   D K      + +  A      LI       LE +PG    ++ E K++ +L+  
Sbjct: 713  INDVTPDDKLKNLKENLVEIAYAKCDELIGLYNQGKLETQPGCNEEQTLEAKISGILSKV 772

Query: 734  RDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLP 793
            R+E G      L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LP
Sbjct: 773  REEVGDICINELDNWNAPLIMATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLP 832

Query: 794  HFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAM 853
            HF K+   P+S+GFV NS+  GL+P EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++
Sbjct: 833  HFQKNSKTPQSKGFVRNSFYSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSL 892

Query: 854  EDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF--RFEMDE 911
            ED+  +YD TVR S   ++QF YG DG+D   +E      +   +S +D A+  +F+ ++
Sbjct: 893  EDLSCQYDNTVRTSSNGIVQFTYGGDGLDPFDMEGNA-QPVNFNRS-WDHAYNIKFDNND 950

Query: 912  ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIAT---SGDSSWPLPVN 968
            +   P  +L+   D L  ++E            +  RY    ++ T   SG   +   ++
Sbjct: 951  KTIYPYQILEITNDILHPLEE------------KLIRYDNIGKVVTPENSGKDEFVDQLD 998

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED--PLSVEAQKNATLF 1026
             +R  +N+ + +    ++ +++  +     + +L       PG++   + ++ Q   ++ 
Sbjct: 999  AERNFYNSLRDYMT--KKANELADVRKSRGMKELLS----APGDEFKLMDLDEQTPDSIR 1052

Query: 1027 FNI--LLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEP 1084
             ++  + R T             RE  +  I    +++ ++ V PG  +G + AQSIGEP
Sbjct: 1053 HSVEQICRIT---------ENTVREFLKIAI----TKYRRARVEPGTAVGAIGAQSIGEP 1099

Query: 1085 ATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNV 1143
             TQMTL TFH+AGV++ NVTLGVPR++EIIN +K I TP ++  L   VN   ER A+ V
Sbjct: 1100 GTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVL---VNENDERAARVV 1156

Query: 1144 QCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIE 1203
            +  +E T L  V    +  Y  +              SY E+  +    EK     L++E
Sbjct: 1157 KGRIEKTLLSDVAYYIQDCYKDN-------------NSYLEVKIDLGTIEK-----LQLE 1198

Query: 1204 LNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI-MNDEAPKGELN-- 1260
            L    + D      A A K+  +F D    +  + N+     +IRI +  EA   +++  
Sbjct: 1199 LTMSDIADA----IARAPKLKIQFGD----VVPESNS-----KIRISVRPEASVSKISAS 1245

Query: 1261 -DESAEDDVFLK------------------------KIESNMLTEMALRGVNLLAVMCHE 1295
              E  E++VF +                         I  N   E+ + G  L  VMC +
Sbjct: 1246 AKEPLENNVFYRMQHLRRALPSIVVKGLPDIARAVINIRDNGKRELLVEGYGLRDVMCTD 1305

Query: 1296 DVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGH 1355
             V   +TT+NH++E+  VLGIEA R +++ E+   +S  G  V+ RH+ +L D MTY+G 
Sbjct: 1306 GVIGSKTTTNHVLEVNSVLGIEAARASIIGEIDYTMSNHGMSVDPRHIQLLGDVMTYKGE 1365

Query: 1356 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGD 1415
            ++ ITR G+++     +   SFE+T D L DAA + + D + GV+E I+LGQ   IGTG 
Sbjct: 1366 VLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGS 1425

Query: 1416 CSLYLNDEMLKNA 1428
              + + D  ++N 
Sbjct: 1426 FKV-VKDTHIRNG 1437


>gi|50293727|ref|XP_449275.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528588|emb|CAG62249.1| unnamed protein product [Candida glabrata]
          Length = 1459

 Score =  775 bits (2001), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/1481 (34%), Positives = 788/1481 (53%), Gaps = 115/1481 (7%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGETTE---RGKPKPGGLSDPRLGTIDRKMKCETCT 70
            ++  ++F  LSP +I   S ++I   +  +      PK GG  DPR+G     M+C TC 
Sbjct: 12   RISGLEFSALSPADIVAQSELEISSRDLFDLENNRSPKEGGALDPRMGVSASSMECTTCH 71

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALK--- 126
             N+A C GHFGH++LA P+FH+G+ K  + I++ +C  CS IL  E D + F   L+   
Sbjct: 72   GNLASCHGHFGHIKLALPVFHVGYFKATIQILQGICKTCSAILLSEQDKRHFLSELRRPG 131

Query: 127  IRNPKNR--LKKILDACKNKTKCE-----GGDEIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
            + N +    LKK+LD CK + +C       G         G   LK           K T
Sbjct: 132  VDNLRRMALLKKVLDQCKKQRRCLHCGALNGVVKKAAAGAGTASLKIIHDTFRWVGKKST 191

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVERK-QTLTAERVLGVLKRISDEDCQLLGLNP-- 236
             E  K I ++K     N + E+    V+R    L   + L + K+I+ EDC+LLG++   
Sbjct: 192  PEKDKWIGDWKEVLSHNPELERY---VKRATDDLNPLKTLNLFKQIASEDCELLGIDATN 248

Query: 237  KYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAP 285
            K  RP+  I + +P PP  +RPS           DDLT +L  I+  +  ++     G  
Sbjct: 249  KAGRPETYIWRYIPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGIEKGIS 308

Query: 286  AHIISEFAQLLQFHIATYFDNE------LPGQPRATQRSGRPIKSICSRLKAKEGRIRGN 339
             + + E    LQ  +A Y +++      LPG      +  +PI+  C RLK K+GR RGN
Sbjct: 309  INNMMEHWDYLQMTVAMYINSDSINPAMLPGSSTGGGKV-KPIRGFCQRLKGKQGRFRGN 367

Query: 340  LMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 399
            L GKRVDFS RTVI+PDP ++ID++ VP  +A  LT+PE VT YNI++L++LV+ GP+  
Sbjct: 368  LSGKRVDFSGRTVISPDPNLSIDEVAVPQLVAKVLTFPEKVTRYNIKKLRQLVQNGPNVH 427

Query: 400  PGKTGAKYIIRDDGQ-RLDLRYL-KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 457
            PG   A Y+++ + + R +LRY  ++   ++L+ G  VERHL DGD VLFNRQPSLH++S
Sbjct: 428  PG---ANYLLKKNEEARRNLRYGDRQKLANNLQYGDVVERHLEDGDVVLFNRQPSLHRLS 484

Query: 458  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 517
            I+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   +++P
Sbjct: 485  ILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTP 544

Query: 518  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED----FDGKVPQPTILKPRP 573
            +S  P++   QD + G   I+ +D+F +K     +L    D    FD  +P P I+KP  
Sbjct: 545  KSGEPIIAATQDFITGSYLISHKDSFFDKASLTQLLSMMSDGSLQFD--IPPPAIMKPCY 602

Query: 574  LWTGKQVFNLII------PKQINL-FRTAAW------HADNDKGILTAGDTLVRIEKGEL 620
            LWTGKQVF+L+I      P +INL  +   +      H  N+   ++  D  V +   ++
Sbjct: 603  LWTGKQVFSLLIKPNKNSPVKINLDAKNKVYIPPKQKHYPNE---MSQNDGFVIVRGSQI 659

Query: 621  LSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 679
            LSG + K  LG     S+ + I  + GP  A   +     L   +L    FSIGI D   
Sbjct: 660  LSGVMDKSVLGDGKKHSVFYTILRDFGPQEAASAMNRMAKLCARYLGNRGFSIGISDVTP 719

Query: 680  DAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGS 739
                 +   D +  A      LI       LE +PG    ++ E K+  +L+  R+E G 
Sbjct: 720  ADDLKQKKEDLVEIAYAKCDELIDLYNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGD 779

Query: 740  SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDD 799
                 L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHF K+ 
Sbjct: 780  VCINELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNS 839

Query: 800  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
              P+S+GFV NS+  GL+P EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +
Sbjct: 840  KTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQ 899

Query: 860  YDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFR--FEMDEENWNPN 917
            YD TVR S   ++QF YG DG+D + +E      +   +S +D A+   F   +    P 
Sbjct: 900  YDNTVRTSSNGIVQFTYGGDGLDPLEMEGNA-QPVNFNRS-WDHAYNITFNNTDRGLLP- 956

Query: 918  YMLQEYIDDLKTIKELRDV-FDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNA 976
            Y +++ +D++    E R + +D   + + A+  +L  +     DS        +RL + +
Sbjct: 957  YEIKKTVDNILKPLEKRLIRYDTLGRPVSAEDDKL-DDYVDQHDS--------ERLFYAS 1007

Query: 977  QKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFA 1036
             + F  D  +            + KL ++ + + G DP      +N  +           
Sbjct: 1008 LREFMTDKAKKLAKLRKS--RGLPKLIKKSE-LEGYDP------ENEHI-------DAIV 1051

Query: 1037 SKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1096
               + + +R+T +A +  +    S++ ++ V PG  +G + AQSIGEP TQMTL TFH+A
Sbjct: 1052 QHSITQLYRITEDAVQKFLEIAISKYHRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFA 1111

Query: 1097 GVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCALEYTTLRSV 1155
            GV++ NVTLGVPR++EIIN +K I TP ++  L   VN+  ER A+ V+  +E T L  V
Sbjct: 1112 GVASMNVTLGVPRIKEIINASKVISTPIINAVL---VNNNDERAARVVKGRIEKTLLSDV 1168

Query: 1156 TEATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDK-K 1213
                +  Y  +     ++ D+  + K   E+  EDIA        L+I+ +   ++ K K
Sbjct: 1169 CYYIQDVYKENMAYLQVKVDLNTIDKLQLELTIEDIAIAITRAPKLKIQTSDVTVLGKDK 1228

Query: 1214 LSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAP----KGELNDESAEDDVF 1269
            +++  + E    +     +    +   + +  R++ +    P    KG LND +      
Sbjct: 1229 IAINVLPEGFGSKTS---STSLKEPTENDVFYRMQTLRRALPSIMVKG-LNDIARA---- 1280

Query: 1270 LKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
            +  I  +   E+ + G  L  VMC + V   +T +NH++EI  VLGIEA R +++ E+  
Sbjct: 1281 VINIRDDGKRELLVEGYGLRDVMCTDGVIGAKTATNHVLEIFNVLGIEAARASIIGEIDY 1340

Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
             +S  G  V+ RH+ +L D MT++G ++ ITR G+++     +   SFE+T D L DAA 
Sbjct: 1341 TMSNHGMSVDPRHIQLLGDVMTFKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAF 1400

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIE 1430
            + + D + GV+E I+LGQ   IGTG   +  N ++ ++ ++
Sbjct: 1401 YMKKDAVEGVSECIILGQTMSIGTGSFKVVKNTDIAEDELK 1441


>gi|118348890|ref|XP_001007918.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena
            thermophila]
 gi|89289685|gb|EAR87673.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena thermophila
            SB210]
          Length = 1759

 Score =  774 bits (1998), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/1215 (37%), Positives = 674/1215 (55%), Gaps = 131/1215 (10%)

Query: 4    RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRK 63
            ++ YS  E AKV  V F ILS  EI    V +I++ E     K   G ++D RLGT   K
Sbjct: 7    KYAYSQMETAKVNGVHFSILSEKEIESWCVCEIKNFENG--NKEDEGFINDKRLGTTS-K 63

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKIL---------- 113
              C+TC     ECPGHFG++ L +P++HI F+ TV  I+  VC  C  +           
Sbjct: 64   DACKTCNQK-NECPGHFGYINLRRPIYHINFINTVKQILLCVCHKCGAVREPPIKRNESG 122

Query: 114  --ADEDD----HKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKN 167
              A + +     K+ + + I  PK RL ++      ++KC+                   
Sbjct: 123  KPASKTEFAKLEKYLEVMNISQPKRRLNELYKILGKQSKCQNDK---------------- 166

Query: 168  KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDE 227
               C +    + +  +K +    A+++ + D  +          L+AE+ L +LK+I   
Sbjct: 167  ---CNSYLF-VKVSVVKFLNLKVAEKQSDKDAIEYD--------LSAEQALEILKKIRYA 214

Query: 228  DCQLL-------GLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMII 270
            D + L         +  + +P  +IL  L +PPP VRPS          D+LT     ++
Sbjct: 215  DSKKLLAYKGQRKHDDDFLQPTNLILTKLLVPPPQVRPSIEMSSNMTCQDELTKCYEEVL 274

Query: 271  RHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLK 330
            + N  ++    N        +  + +Q  +A   DN+ P +  A +   + +KS   RLK
Sbjct: 275  KLNAQIKDNSDN-------RKLVEQIQSVVARMMDNDKP-RLEALKIKSKVVKSFSQRLK 326

Query: 331  AKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKE 390
             KEGR R NLMGKRVDFSAR+VI+PD  + +D+LGVP SIA +LT PE V   NI R++E
Sbjct: 327  GKEGRFRQNLMGKRVDFSARSVISPDANLWLDELGVPRSIADSLTVPEIVNQQNINRIRE 386

Query: 391  LVEYGPHP---PPGKTGAKY------IIRDDGQRLDLRYLKKSSDH----HLELGYKVER 437
            L + G       P +    Y      I   D Q  D   +  + D+     +++G  +ER
Sbjct: 387  LWKQGKIKSIMKPNREKQIYEAYDAIICSGDRQADDNFDMHVNDDYSYCSQIKIGVIIER 446

Query: 438  HLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQS 497
             L +GD+VLFNRQPSLHKMS+MGHR++I+PYSTFRLNLSVT+PYNADFDGDEMNMHVPQS
Sbjct: 447  ALQNGDYVLFNRQPSLHKMSMMGHRVRILPYSTFRLNLSVTTPYNADFDGDEMNMHVPQS 506

Query: 498  FETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE 557
            +ETR E+  +  VP+ IV+P++N+PVMG+VQD+LLG    T RD F+ ++  MN++MW +
Sbjct: 507  YETRVELGYICHVPRQIVTPKANKPVMGLVQDSLLGVAMFTLRDKFLTREQVMNLVMWID 566

Query: 558  DFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEK 617
            +++G +P P ILKP PLWTGKQ+ +L+IP+Q+ + R      ++DK      D  + I K
Sbjct: 567  NWEGDLPMPAILKPEPLWTGKQIMSLVIPEQMTMTRFKG-DKEDDKW-FHKQDESIYIYK 624

Query: 618  GELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDT 677
            GEL+ G + K  +G   G L+H+IW ++G +  + F+   Q +VN WL+    +I   D 
Sbjct: 625  GELIQGYMNKAIVGDGPGGLVHLIWLDIGHEETKNFMTRCQRVVNNWLIMFGHTISCADI 684

Query: 678  IADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE-----PGRTMMESFENKVNQVLNT 732
            +   K  E I     KA      +    QD +   +      G+ + +SFE +VN +LN 
Sbjct: 685  VPSEKCSEEIEKIRKKAFEKYDKIELDFQDAAYIDQNNMHKAGKKIFDSFEVQVNSILNE 744

Query: 733  ARDEAGSSAQKSLS-ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
             R E+   A++++  + N    MV +GSKG   N++Q+   VGQQN+EG RI  GF  RT
Sbjct: 745  LRQESEKKAEETIKFKYNQFNKMVWSGSKGKATNLAQVMGLVGQQNIEGARIRNGFSRRT 804

Query: 792  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
            LPHF KDD G  +RGFV N++  GL P EFFFH MGGREGL DTAVKTS TGYIQR+LVK
Sbjct: 805  LPHFCKDDNGIIARGFVVNNFYIGLKPYEFFFHTMGGREGLSDTAVKTSRTGYIQRKLVK 864

Query: 852  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF--EM 909
            A+ED++V+YDGTVR+S G +IQ  YGED +   +IE+Q +  +  K+ +F K +RF    
Sbjct: 865  ALEDVIVRYDGTVRDSQGMIIQTCYGEDSLAGEFIETQKIGEVDYKEEDFQKEYRFVKAN 924

Query: 910  DEENWNPNYMLQEYIDDLKTIKELRDVFDA----------EVQKLEADRYQLATE----- 954
              ++W   Y   + +++  + +  RDV  A          E  + E  ++ L  E     
Sbjct: 925  KSDDWLFQYTKLDQMENQISKEISRDVLIAIKEEFMRMINERNEGEDPKFILEQEYEELI 984

Query: 955  ------------IATSGDSSWPLPVNLKRLIWNAQ----KTFKVDPRRPSDMHPMEVVEA 998
                         A  G     LPVN+ R+I +A+    +  K   R     +P++V ++
Sbjct: 985  EARNLFRKNFYFYAQEGKLDINLPVNIGRMIESAKIEMSQKNKTYTRDQCKTNPIQVYKS 1044

Query: 999  VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            + +L + L     +  +  E    +   F   +R    SK+++  H+L+ E F+ +  EI
Sbjct: 1045 LLELFKNLDDYAVKRGMEYE----SLALFKAHIRLHLGSKKIVLRHKLSMEVFDKLTKEI 1100

Query: 1059 ESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK 1118
              +F +++  PGE IG ++AQS+GEP TQMTLNTFH+AGVS +NVTLGVPRL+EI++ +K
Sbjct: 1101 FDKFKKAISHPGETIGAISAQSVGEPTTQMTLNTFHFAGVSDRNVTLGVPRLQEILDASK 1160

Query: 1119 KIKTPSLSVFLKPGV 1133
             +KTP ++VF + G+
Sbjct: 1161 NVKTPEMTVFFENGL 1175



 Score =  174 bits (440), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 153/383 (39%), Positives = 210/383 (54%), Gaps = 44/383 (11%)

Query: 1285 GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1344
            G NL  V+  + VDA RT SN + EII +LGIEA RR++++++RVVI   G Y+NYRHLA
Sbjct: 1396 GSNLKEVLKVDKVDATRTYSNDIQEIITILGIEAGRRSIVNQIRVVIEPYGIYINYRHLA 1455

Query: 1345 ILCDTMTYRGHLMAITRHGINRNDTGPMMRC----SFEETVDILLDAAVFAESDYLRGVT 1400
            IL + MT RG L  I R+GINR    P + C    SFEETVDIL  AA+F E D L+GVT
Sbjct: 1456 ILAEWMTVRGRLTPINRNGINR---IPGLSCLRKSSFEETVDILNTAAIFFEKDDLKGVT 1512

Query: 1401 ENIMLGQLAPIGTGDCSLYLN-DEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDG 1459
            ENI+ GQ   IGTG   L ++ +++ +   + Q+   +E  ++    + S    TP H  
Sbjct: 1513 ENIIFGQNCDIGTGCFDLLVDLNKVGEFKTKRQVEQTLEMEDYSENES-SRYENTPSH-- 1569

Query: 1460 MMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSP-GYSPTSPG 1518
              +PG    P L  +     +   + G  +F+PT+      +SPGY+ S+P  YS T   
Sbjct: 1570 FQTPG----PGLVSAYPNSIRTVQHAG--SFTPTTP---YLNSPGYNMSTPISYSNT--- 1617

Query: 1519 YSPT-SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1577
            Y+ T S  YSP +   SP  P     SP YSP  P+++P   S SP + S   +SP Y  
Sbjct: 1618 YNQTRSSQYSPQTGNNSPFVP-----SPNYSP--PSHTPAG-STSPANASPYASSPQYKS 1669

Query: 1578 TSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPAYSPTSPA-YSPTSPAYSPTSPSYSPTS 1635
            +S S    SPSY SP+   Y+  SPSY   +P  S +SP   S ++   S  SP Y  +S
Sbjct: 1670 SSLS-GAHSPSYTSPSQVRYN--SPSYQ--NPHASSSSPLDRSKSAYMGSQQSPQYM-SS 1723

Query: 1636 PSYSP-TSPSYS--PTSPSYSPT 1655
            P Y   T+P      +  SY+PT
Sbjct: 1724 PHYEQRTTPMTRNIKSETSYNPT 1746



 Score = 60.1 bits (144), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/209 (34%), Positives = 103/209 (49%), Gaps = 25/209 (11%)

Query: 1547 YSPTSPAYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP- 1601
            YS    +    +PS+     P   S  P S      + S++PT+P  +  SP Y+ ++P 
Sbjct: 1555 YSENESSRYENTPSHFQTPGPGLVSAYPNSIRTVQHAGSFTPTTPYLN--SPGYNMSTPI 1612

Query: 1602 SYSPTSPAYSPT-SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
            SYS T   Y+ T S  YSP +   SP  PS     P+YSP  PS++P   S SP + S  
Sbjct: 1613 SYSNT---YNQTRSSQYSPQTGNNSPFVPS-----PNYSP--PSHTPAG-STSPANASPY 1661

Query: 1661 PTSPAYSPTSPGYSPTSPSY-SPTSPTYSPTSPSY-NPQSAKYSPSLAYSPSSPRLSPAS 1718
             +SP Y  +S      SPSY SP+   Y+  SPSY NP ++  SP L  S S+   S  S
Sbjct: 1662 ASSPQYKSSSLS-GAHSPSYTSPSQVRYN--SPSYQNPHASSSSP-LDRSKSAYMGSQQS 1717

Query: 1719 PYSPTSPNYSPTSSSYSPTSPSYSPSSPT 1747
            P   +SP+Y   ++  +    S +  +PT
Sbjct: 1718 PQYMSSPHYEQRTTPMTRNIKSETSYNPT 1746



 Score = 52.8 bits (125), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 27/174 (15%)

Query: 1624 YSPTSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP- 1678
            YS    S    +PS+     P   S  P S      + S++PT+P  +  SPGY+ ++P 
Sbjct: 1555 YSENESSRYENTPSHFQTPGPGLVSAYPNSIRTVQHAGSFTPTTPYLN--SPGYNMSTPI 1612

Query: 1679 SYSPTSPTYSPT-SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPT 1737
            SYS T   Y+ T S  Y+PQ+   SP            P+  YSP  P+++P  S+ SP 
Sbjct: 1613 SYSNT---YNQTRSSQYSPQTGNNSP----------FVPSPNYSP--PSHTPAGST-SPA 1656

Query: 1738 SPSYSPSSPTYSPSSPYNAGGGNPDY-SPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
            + S   SSP Y  SS   +G  +P Y SPS  +Y+  +  +P A   SP   S+
Sbjct: 1657 NASPYASSPQYKSSSL--SGAHSPSYTSPSQVRYNSPSYQNPHASSSSPLDRSK 1708


>gi|31127030|gb|AAF26646.2|AF138996_1 RNA polymerase II largest subunit [Nebalia hessleri]
          Length = 624

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/628 (59%), Positives = 470/628 (74%), Gaps = 8/628 (1%)

Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
           SARTVIT DP + IDQ+GVP SIA NLTYPE VTP+NI+++ ELV+ G    PG   AKY
Sbjct: 1   SARTVITADPNLRIDQVGVPRSIAQNLTYPEIVTPFNIQKMMELVKRGNSQYPG---AKY 57

Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
           I+RD+G R+DLRY  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P
Sbjct: 58  IVRDNGARIDLRYHPKPSDLHLQCGYKVERHITDGDLVIFNRQPTLHKMSMMGHRVKVLP 117

Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
           +STFR+NLSVTSPYNADFDGDEMN+HVPQS ETRAE+  + + P+ I++PQSN+PVMGIV
Sbjct: 118 WSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEIENMHVTPRMIITPQSNKPVMGIV 177

Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
           QDTL   RK+TKRD F+E    MN LM+   +DGK+PQP ILKP+PLWTGKQ+F +IIP 
Sbjct: 178 QDTLTAVRKMTKRDVFLEMHEMMNCLMFLPIWDGKMPQPAILKPKPLWTGKQLFTMIIPG 237

Query: 588 QINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            +N+ +T + H D+ D G    ++ GDT V +E G+L+ G +CKK+LG S+GSL+H+ W 
Sbjct: 238 NLNMVKTHSTHPDDEDDGPYKWISPGDTKVLVEHGDLVMGIICKKSLGASSGSLLHICWM 297

Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
           E+G D A +F G+ Q +VN WLL    SIGIGDTI+D  T   I DTI KAK +V  +I 
Sbjct: 298 ELGHDIAGRFYGNIQTVVNNWLLLEGHSIGIGDTISDPNTYRDITDTIRKAKEDVMEVIH 357

Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
           +A +  LE  PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV AGSKGS 
Sbjct: 358 KAHNDDLEATPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSN 417

Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
           INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+F
Sbjct: 418 INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYF 477

Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
           HAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G VIQ  YGEDG+  
Sbjct: 478 HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQVIQLRYGEDGLAG 537

Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            ++E Q + ++KM    F+  +RF+   E +      +E + ++    +   + + E Q+
Sbjct: 538 EFVEFQKMPTVKMSNRRFEDKYRFDPTNERYLRRLFNEEVVREIIGSGDAISMLEQEYQQ 597

Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKR 971
           L  DR  L T I   GD+   LP NL R
Sbjct: 598 LSEDRKTLRT-IFPKGDTKVVLPCNLDR 624


>gi|311977893|ref|YP_003987013.1| DNA-directed RNA polymerase subunit 1 [Acanthamoeba polyphaga
            mimivirus]
 gi|81990383|sp|Q7T6X5.2|RPO1_MIMIV RecName: Full=DNA-directed RNA polymerase subunit 1
 gi|55664871|gb|AAQ09585.2| DNA directed RNA polymerase subunit 1 [Acanthamoeba polyphaga
            mimivirus]
 gi|308204869|gb|ADO18670.1| DNA-directed RNA polymerase subunit 1 [Acanthamoeba polyphaga
            mimivirus]
 gi|339061439|gb|AEJ34743.1| DNA-directed RNA polymerase subunit 1 [Acanthamoeba polyphaga
            mimivirus]
          Length = 1495

 Score =  772 bits (1993), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 500/1516 (32%), Positives = 795/1516 (52%), Gaps = 162/1516 (10%)

Query: 12   VAKVRMVQFGILSPDEI-RQMSVVQ---IEHGET--TERGKPKPGGLSDPRLGTIDRKMK 65
            +  V  ++F I S + I R  ++V    I   ET  +   +P  GG+ D RLG  +  ++
Sbjct: 15   IETVERIEFCINSNESIIRHSAIVDPNGITEAETFNSNNNEPVQGGVIDKRLGVTESHLE 74

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C TC      CPGHFGH++  +P+FH+G++  +  I+  +C  C+K+L  +++ +    +
Sbjct: 75   CSTCGETALRCPGHFGHIKFVEPVFHMGYLIYLKHILSCICIRCNKLLVYKNEKEIAALI 134

Query: 126  KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIE---- 181
            K +  K R  +I   CK  T C+                 K   GCG    K++I+    
Sbjct: 135  KNKQGKQRFAEIRSICKKVTHCQ-----------------KENYGCGTPAHKISIDKRNG 177

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVER-KQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             + ++AE     K+ D+ ++  E  +R +Q LT +    +LK +SDEDC ++G +P  +R
Sbjct: 178  NIFLLAE---PVKRTDEYDETGETRKRPQQILTPQLCYDILKSVSDEDCIIMGFDPAKSR 234

Query: 241  PDWMILQVLPIPPPPVRPS------------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            P+ MI+   P+PP  VRPS            DDLTH+L  II+ NENL+  + +G+    
Sbjct: 235  PEDMIILNFPVPPVQVRPSIRAEILSSPTMDDDLTHKLIDIIKSNENLKNTKGDGSLIKY 294

Query: 289  --ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
              I++   LLQ H+AT+F N++ G  R+ Q++ +  KS+  RL+ KEGRIRGNLMGKRVD
Sbjct: 295  TSINDDFMLLQLHVATFFANDMAGLARSQQKNKKVTKSMSERLRGKEGRIRGNLMGKRVD 354

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA- 405
             SARTVIT DP I ++++GVP  IA NLT+ E VT +NIE L +LV+ G    PG     
Sbjct: 355  MSARTVITSDPNIALNEVGVPLIIAKNLTFDEIVTEHNIEYLTQLVKNGKRVYPGANFVI 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLEL--GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
            K++I  +G      Y  K  D  + L  G  V+R L DGD V+FNRQPSLHK+S+MGH+ 
Sbjct: 415  KHVIDAEGNESGHIYHLKYVDKPISLKPGDIVKRQLIDGDIVIFNRQPSLHKLSMMGHKC 474

Query: 464  KIMPYS---TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
             ++P +   TFR+N+SVT PYNADFDGDEMN+HVPQS +T  E+L +    +  VSP ++
Sbjct: 475  HVIPDNNLLTFRVNVSVTDPYNADFDGDEMNLHVPQSIQTATEILLIANASRRFVSPATS 534

Query: 521  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE-DFDGKVPQPTILKPRPLWTGKQ 579
               +   QDTL+G    T+ D  I+    M+ILM      D  +P+   +      +GK 
Sbjct: 535  NIAIKAKQDTLMGSYVQTEPDMEIDWRDAMSILMSTSVKLDNDIPKYQNV------SGKF 588

Query: 580  VFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIH 639
            +++ IIP+ +N+ +       NDK      +  ++I+ GEL  GTL K    +   S++ 
Sbjct: 589  LYSQIIPEGLNITKRK-----NDK------EFQLKIKNGELTDGTLGK----SEISSILQ 633

Query: 640  VIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVK 699
             IW + G    ++F+   Q ++  +L++  +++ I DT+   K  + I D I   +    
Sbjct: 634  RIWFQYGSKETQEFIDDAQRMILQFLMRYGYTVSIKDTVIGEKVNQYIYDLIETKRKETL 693

Query: 700  NLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGS 759
              I +      + +P     ++FE K+ + L + +DE  ++  ++  +++ +   +++GS
Sbjct: 694  AFITE-----YDNDPYVMTKDAFEIKLQENLKSVQDEIKNTVMRNFDKNSGIFIAISSGS 748

Query: 760  KGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQ 819
             G  +N  Q+  C+GQ  VEGKRI   F  RTLP F K D    SRGF  NS++ GL P 
Sbjct: 749  SGEPMNAGQIAGCIGQVIVEGKRIQIRFNGRTLPMFPKFDDSAFSRGFCRNSFIEGLGPF 808

Query: 820  EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGED 879
            EFFF  M GREG+I+TA+KT++TGYIQR+LVK +EDI  +YDGTVRN+ G +I  +YG++
Sbjct: 809  EFFFQVMAGREGIINTAIKTADTGYIQRKLVKMLEDIKQEYDGTVRNANGKLISCVYGDN 868

Query: 880  GMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDA 939
            G+++     Q +D +    ++    + +  DE      Y+++ +  D +   +L +    
Sbjct: 869  GINTENQVDQKIDLISANDNKVRNDYVYTEDE----IKYLIKNHKTDKRYTTDLNNSL-- 922

Query: 940  EVQKLEADRYQ------LATEIATSGDSSWPLPVNLKRLIWNA------QKTFKVDP--- 984
              +KL + R Q      L    +     ++ +PV++++ I+N            VDP   
Sbjct: 923  -YRKLISMRDQLRRIQRLVNLTSAEFKETYKMPVDIQQFIFNIINRDVRNNNVVVDPYYV 981

Query: 985  -RRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKE 1043
             +   DM+       + K   R   +  ED      +K       I L    A K+    
Sbjct: 982  LKMIKDMYYGS-DSKIMKYNNRTSRIKKED------EKRIKFLMKIYLYDVLAPKKCTHV 1034

Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
            ++ +++ F+ ++   +   + + V  GEM+G VAAQSIGEP TQ  L +FH +G + K V
Sbjct: 1035 YKFSKQEFDEIVDYFKKTIMLAKVEGGEMVGFVAAQSIGEPVTQTNLKSFHKSG-TGKTV 1093

Query: 1104 TLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWY 1163
            + G+ R++E++ ++K IKTP   + L+    + K  A  +   L+YTTLR V E  +V Y
Sbjct: 1094 SGGLVRVKELLGISKNIKTPITEIILEEKYKNDKITASRIASYLKYTTLRDVVEKADVIY 1153

Query: 1164 DPDPM---GTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAV- 1219
            DP+P    G + ++ V+ +    +         K  PW+LRI L++E M+++ ++M  + 
Sbjct: 1154 DPEPFSKDGLMKKDGVDNIFDQEQGKTGCQTDIKNLPWVLRIMLSKEKMIERNINMLEIK 1213

Query: 1220 ----------------AEKINQEFDDDLTC--IFNDDNADKLILRIRIMNDEAPKGELN- 1260
                             ++ N+  D    C  + N DN+   I+ +R    +A    LN 
Sbjct: 1214 TSFCRNWGTRNEDKTSKKEFNKVIDKITQCAIVTNYDNSQVPIVHVRF---DANNYNLNT 1270

Query: 1261 ----DESAEDDVFLKKI----ESNMLTE-------------------MALRGVNLLAVMC 1293
                 E   +   +K I    ESN + E                   +   G+NL  +  
Sbjct: 1271 LIQFQEMVINTYKIKGISNITESNNIIEESYVDFDDEGNVVKKKQYVIIAEGINLSEMSQ 1330

Query: 1294 HEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYR 1353
               +D  RT  N ++ I E+ G+EA R A + E    I   G + NY+H+ IL D +T+ 
Sbjct: 1331 INGIDLLRTKCNDIVTIYEMYGVEAARTAFIKEFTAAIESSGGFSNYQHIEILADAITHM 1390

Query: 1354 GHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGT 1413
            G L+ + RHG N+ DT P  R SFE+TV+ LL AAVF ESD++R V+  IM+G L   GT
Sbjct: 1391 GGLIPVNRHGANKLDTDPFSRASFEKTVEQLLAAAVFGESDHMRSVSARIMVGALINGGT 1450

Query: 1414 GDCSLYLNDEMLKNAI 1429
            G   L L+ + ++ ++
Sbjct: 1451 GCFDLLLDHKKIQQSL 1466


>gi|398257327|gb|EJN40935.1| DNA directed RNA polymerase subunit 1 [Acanthamoeba polyphaga
            lentillevirus]
          Length = 1495

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1516 (32%), Positives = 795/1516 (52%), Gaps = 162/1516 (10%)

Query: 12   VAKVRMVQFGILSPDEI-RQMSVVQ---IEHGET--TERGKPKPGGLSDPRLGTIDRKMK 65
            +  V  ++F I S + I R  ++V    I   ET  +   +P  GG+ D RLG  +  ++
Sbjct: 15   IETVERIEFCINSNESIIRHSAIVDPNGITEAETFNSNNNEPVQGGVIDKRLGVTESHLE 74

Query: 66   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
            C TC      CPGHFGH++  +P+FH+G++  +  I+  +C  C+K+L  +++ +    +
Sbjct: 75   CSTCGETALRCPGHFGHIKFVEPVFHMGYLIYLKHILSCICIRCNKLLVYKNEKEIAALI 134

Query: 126  KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIE---- 181
            K +  K R  +I   CK  T C+                 K   GCG    K++I+    
Sbjct: 135  KNKQGKQRFAEIRSICKKVTHCQ-----------------KENYGCGTPAHKISIDKRNG 177

Query: 182  GMKMIAEYKAQRKKNDDQEQLPEPVER-KQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
             + ++AE     K+ D+ ++  E  +R +Q LT +    +LK +SDEDC ++G +P  +R
Sbjct: 178  NIFLLAE---PVKRTDEYDETGETRKRPQQILTPQLCYDILKSVSDEDCIIMGFDPAKSR 234

Query: 241  PDWMILQVLPIPPPPVRPS------------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
            P+ MI+   P+PP  VRPS            DDLTH+L  II+ NENL+  + +G+    
Sbjct: 235  PEDMIILNFPVPPVQVRPSIRAEILSSPTMDDDLTHKLIDIIKSNENLKNTKGDGSLIKY 294

Query: 289  --ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
              I++   LLQ H+AT+F N++ G  R+ Q++ +  KS+  RL+ KEGRIRGNLMGKRVD
Sbjct: 295  TSINDDFMLLQLHVATFFANDMAGLARSQQKNKKVTKSMSERLRGKEGRIRGNLMGKRVD 354

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA- 405
             SARTVIT DP I ++++GVP  IA NLT+ E VT +NI+ L +LV+ G    PG     
Sbjct: 355  MSARTVITSDPNIALNEVGVPLIIAKNLTFDEIVTEHNIDYLTQLVKNGKRVYPGANFVI 414

Query: 406  KYIIRDDGQRLDLRYLKKSSDHHLEL--GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
            K++I  +G      Y  K  D  + L  G  V+R L DGD V+FNRQPSLHK+S+MGH+ 
Sbjct: 415  KHVIDSEGNESGHIYHLKYVDKPISLKPGDIVKRQLIDGDIVIFNRQPSLHKLSMMGHKC 474

Query: 464  KIMPYS---TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
             ++P +   TFR+N+SVT PYNADFDGDEMN+HVPQS +T  E+L +    +  VSP ++
Sbjct: 475  HVIPDNNLLTFRVNVSVTDPYNADFDGDEMNLHVPQSIQTATEILLIANASRRFVSPATS 534

Query: 521  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE-DFDGKVPQPTILKPRPLWTGKQ 579
               +   QDTL+G    T+ D  I+    M+ILM      D  +P+   +      +GK 
Sbjct: 535  NIAIKAKQDTLMGSYVQTEPDMEIDWRDAMSILMSTSVKLDNDIPKYQNV------SGKF 588

Query: 580  VFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIH 639
            +++ IIP+ +N+ +       NDK      +  ++I+ GEL  GTL K    +   S++ 
Sbjct: 589  LYSQIIPEGLNITKRK-----NDK------EFQLKIKNGELTDGTLGK----SEISSILQ 633

Query: 640  VIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVK 699
             IW + G    ++F+   Q ++  +L++  +++ I DT+   K  + I D I   +    
Sbjct: 634  RIWFQYGSKETQEFIDDAQRMILQFLMRYGYTVSIKDTVIGEKVNQYIYDLIETKRKETL 693

Query: 700  NLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGS 759
              I +      + +P     ++FE K+ + L + +DE  ++  ++  +++ +   +++GS
Sbjct: 694  AFITE-----YDNDPYVMTKDAFEIKLQENLKSVQDEIKNTVMRNFDKNSGIFIAISSGS 748

Query: 760  KGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQ 819
             G  +N  Q+  C+GQ  VEGKRI   F  RTLP F K D    SRGF  NS++ GL P 
Sbjct: 749  SGEPMNAGQIAGCIGQVIVEGKRIQIRFNGRTLPMFPKFDDSAFSRGFCRNSFIEGLGPF 808

Query: 820  EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGED 879
            EFFF  M GREG+I+TA+KT++TGYIQR+LVK +EDI  +YDGTVRN+ G +I  +YG++
Sbjct: 809  EFFFQVMAGREGIINTAIKTADTGYIQRKLVKMLEDIKQEYDGTVRNANGKLISCVYGDN 868

Query: 880  GMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDA 939
            G+++     Q +D +    ++    + +  DE      Y+++ +  D +   +L +    
Sbjct: 869  GINTENQVDQKIDLISANDNKVRNDYVYTEDE----IKYLIKNHKTDKRYTTDLNNSL-- 922

Query: 940  EVQKLEADRYQ------LATEIATSGDSSWPLPVNLKRLIWNA------QKTFKVDP--- 984
              +KL + R Q      L    +     ++ +PV++++ I+N            VDP   
Sbjct: 923  -YRKLISMRDQLRRIQRLVNLTSAEFKETYKMPVDIQQFIFNIINRDVRNNNVVVDPYYV 981

Query: 985  -RRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKE 1043
             +   DM+       + K   R   +  ED      +K       I L    A K+    
Sbjct: 982  LKMIKDMYYGS-DSKIMKYNNRTSRIKKED------EKRIKFLMKIYLYDVLAPKKCTHV 1034

Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
            ++ +++ F+ ++   +   + + V  GEM+G VAAQSIGEP TQ  L +FH +G + K V
Sbjct: 1035 YKFSKQEFDEIVDYFKKTIMLAKVEGGEMVGFVAAQSIGEPVTQTNLKSFHKSG-TGKTV 1093

Query: 1104 TLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWY 1163
            + G+ R++E++ ++K IKTP   + L+    + K  A  +   L+YTTLR V E  +V Y
Sbjct: 1094 SGGLVRVKELLGISKNIKTPITEIILEEKYKNDKITASRIASYLKYTTLRDVVEKADVIY 1153

Query: 1164 DPDPM---GTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAV- 1219
            DP+P    G + ++ V+ +    +         K  PW+LRI L++E M+++ ++M  + 
Sbjct: 1154 DPEPFSKDGLMKKDGVDNIFDQEQGKSGCQTDIKNLPWVLRIMLSKEKMIERNINMLEIK 1213

Query: 1220 ----------------AEKINQEFDDDLTC--IFNDDNADKLILRIRIMNDEAPKGELN- 1260
                             ++ N+  D    C  + N DN+   I+ +R    +A    LN 
Sbjct: 1214 TSFCRNWGTRNEDKTSKKEFNKVIDKITQCAIVTNYDNSQVPIVHVRF---DANNYNLNT 1270

Query: 1261 ----DESAEDDVFLKKI----ESNMLTE-------------------MALRGVNLLAVMC 1293
                 E   +   +K I    ESN + E                   +   G+NL  +  
Sbjct: 1271 LIQFQEMVINTYKIKGISNITESNNIIEESYVDFDDEGNVVKKKQYVIIAEGINLSEMSQ 1330

Query: 1294 HEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYR 1353
               +D  RT  N ++ I E+ G+EA R A + E    I   G + NY+H+ IL D +T+ 
Sbjct: 1331 INGIDLLRTKCNDIVTIYEMYGVEAARTAFIKEFTAAIESSGGFSNYQHIEILADAITHM 1390

Query: 1354 GHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGT 1413
            G L+ + RHG N+ DT P  R SFE+TV+ LL AAVF ESD++R V+  IM+G L   GT
Sbjct: 1391 GGLIPVNRHGANKLDTDPFSRASFEKTVEQLLAAAVFGESDHMRSVSARIMVGALINGGT 1450

Query: 1414 GDCSLYLNDEMLKNAI 1429
            G   L L+ + ++ ++
Sbjct: 1451 GCFDLLLDHKKIQQSL 1466


>gi|150951372|ref|XP_001387687.2| DNA-directed RNA polymerase III subunit C1 (RPO31) [Scheffersomyces
            stipitis CBS 6054]
 gi|149388539|gb|EAZ63664.2| DNA-directed RNA polymerase III subunit C1 (RPO31) [Scheffersomyces
            stipitis CBS 6054]
          Length = 1448

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 521/1492 (34%), Positives = 795/1492 (53%), Gaps = 129/1492 (8%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCTA 71
            ++ ++F  LS  +I   S V+++  +    E+G+ PK  G  D R+G      +C TC  
Sbjct: 13   IKGLEFSALSAKDIVAQSEVEVQTRDLYDLEKGRTPKVAGALDTRMGISSNSNECATCHG 72

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADED-DHKFKQALKIRNP 130
            N+A C GHFGH+ LA P+FH+G+ K+++ +++ +C NCS +L DE+   +F   L+  N 
Sbjct: 73   NLASCHGHFGHIRLALPVFHVGYFKSIIQVLQCICKNCSAVLLDENTKRQFISDLRRPNI 132

Query: 131  KNR-----LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKM 185
             N      LKK+LD CK + +C   + ++         +KK   G G    K+  +  + 
Sbjct: 133  DNLRRMKILKKVLDQCKKQRRCLKCNHVN-------GVVKKAASGAGPAALKIVHDTFRW 185

Query: 186  IAEYKAQRKKNDDQEQLPEPVERKQTLT--AERV---------LGVLKRISDEDCQLLGL 234
            I +     K+  D+E   + + R   L   A+RV         L + K+I+  DC+L GL
Sbjct: 186  IGKKPTPEKEYWDKE-FDQVLSRNPELEKFAKRVYDDLNPLKTLNLFKQITPSDCELFGL 244

Query: 235  NP-KYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGA 284
            +P +  RP+  I + LP PP  +RPS         DDLT +L  I+  +  ++     G 
Sbjct: 245  DPARGGRPEMYIWRYLPAPPVCIRPSVMMDSQSNEDDLTVKLTEIVWTSSLIKAGIEKGI 304

Query: 285  PAHIISEFAQLLQFHIATYFDNE------LPGQPRATQRSGRPIKSICSRLKAKEGRIRG 338
              + + E    LQ  +A Y +++      LP       +S +PI+  C RLK K+GR RG
Sbjct: 305  SINNLMEQWDYLQLSVAMYINSDSANPALLPSSGGGGSKSSKPIRGFCQRLKGKQGRFRG 364

Query: 339  NLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHP 398
            NL GKRVDFS RTVI+PDP + ID++ VP  +A  LTYPE  T YN ++L+ LV  GP  
Sbjct: 365  NLSGKRVDFSGRTVISPDPNLKIDEVAVPELVAKVLTYPERCTRYNRKKLQRLVVNGPDI 424

Query: 399  PPGKTGAKYIIRDDGQ-RLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKM 456
             PG   A Y+++ + Q + +LR+  +     +L++G  VERH+ DGD VLFNRQPSLH++
Sbjct: 425  HPG---ANYVMKQNEQAKRNLRFGDRVKLAKNLQIGDLVERHIEDGDVVLFNRQPSLHRL 481

Query: 457  SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 516
            SI+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   +++
Sbjct: 482  SILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLT 541

Query: 517  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK--VPQPTILKPRPL 574
            P+S  P++   QD + G   I+ +D+F ++   + +L    D D +  +P P+I KP  L
Sbjct: 542  PKSGEPIIAATQDFITGSYLISHKDSFFDRASLVQLLSMMSDADVQFDIPPPSIFKPVML 601

Query: 575  WTGKQVFNLII-PKQ-----INLFRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGTL 625
            WTGKQVF+L+I P +     INL          +KG+   ++  D  V I   ++L+G +
Sbjct: 602  WTGKQVFSLLIKPNKKSNVVINLDAKCKTFIPPEKGLPSEMSPNDGFVIIRGSQVLAGVM 661

Query: 626  CKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTM 684
             K  LG     S+ + I  + GP+ A   +     L   +L    FSIGI D        
Sbjct: 662  DKSLLGDGKKHSVFYTILRDYGPEEAATAMNRMAKLCARFLGNRGFSIGINDVTPGFDLR 721

Query: 685  ETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKS 744
                  + +A      LI       LE +PG    ++ E K++ +L+  R+E G    + 
Sbjct: 722  RKKELMVEQAYLKCDELIDLYHRGKLETQPGCNEEQTLEAKISGLLSKVREEVGEVCIRE 781

Query: 745  LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 804
            L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHFTK+   P+S
Sbjct: 782  LDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNSKTPQS 841

Query: 805  RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 864
            +GFV NS+  GLTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD TV
Sbjct: 842  KGFVRNSFYSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQYDSTV 901

Query: 865  RNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMK-KSEFDKAFR--FEMDEENWNPNYMLQ 921
            RNS   ++QF YG DG+D   +E    D+  +  K ++D AF   F + +++  P Y + 
Sbjct: 902  RNSSNGIVQFTYGGDGLDPYDMEG---DARPVNFKRQWDHAFNITFNIKDKSLLP-YEII 957

Query: 922  EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFK 981
            + ++ +    E R +    V K+  +      E     D+        +R  + + + F 
Sbjct: 958  DLVNSILEPLEDRLIRYDNVGKILPEEDFDKIEYIDQNDA--------ERAYYQSLRDFV 1009

Query: 982  VDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVL 1041
             D  +   +  +     +     R    P  + +  ++ ++A    + LL+   +SK + 
Sbjct: 1010 TD--KAEQLAQIREHRGLRTFFTR----PDSEDILFDSDESAVNAVDQLLK--ISSKTI- 1060

Query: 1042 KEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAK 1101
             E  L +  +++   ++E         PG  +G + AQSIGEP TQMTL TFH+AGV++ 
Sbjct: 1061 -EKFLEQSLYKYSKAKVE---------PGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASM 1110

Query: 1102 NVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKE-RAKNVQCALEYTTLRSVTEATE 1160
            NVTLGVPR++EIIN +K I TP ++  L   VN   E  A+ V+  +E T L+ V    E
Sbjct: 1111 NVTLGVPRIKEIINASKTISTPIINSVL---VNDDDEIAARVVKGRVEKTLLKDVAFFIE 1167

Query: 1161 VWYDPDPMGTIIEEDVEFV-KSYYEMPDEDI------APE-KISPWLLRIELNREMMVDK 1212
              Y  +     I+ D+  + K   E+  +DI      AP+ KISP         ++ V  
Sbjct: 1168 DVYKNEMAYLSIKIDMSTIEKLQLELTIDDIVTAIHNAPKLKISPG--------DVSVSG 1219

Query: 1213 KLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAP----KGELNDESAEDDV 1268
            K  +  +A     + D     + N  NA++L  R++ +    P    KG  N   A    
Sbjct: 1220 KDRVNVLATLRESKAD----ALKNGSNANELFFRMQQLRRSLPNICIKGLPNIMRA---- 1271

Query: 1269 FLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELR 1328
             +  I  +   E+ + G  L  VM  + +   +TT+NH++E+ EVLGIEA R +++ E+ 
Sbjct: 1272 -VINIRDDGKKELLVEGYGLKDVMSTDGIVGTKTTTNHVLEVFEVLGIEAARASIIKEID 1330

Query: 1329 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1388
              +S  G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T D L DAA
Sbjct: 1331 YTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAA 1390

Query: 1389 VFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
             F +SD + GV+E I+LGQ   IGTG   L  +    K  ++++ P+  EGL
Sbjct: 1391 FFMKSDKIEGVSECIILGQSMSIGTGSFKLVKSSNYDKKVLKMK-PTLFEGL 1441


>gi|241955144|ref|XP_002420293.1| DNA-directed RNA polymerase III subunit, putative [Candida
            dubliniensis CD36]
 gi|223643634|emb|CAX42517.1| DNA-directed RNA polymerase III subunit, putative [Candida
            dubliniensis CD36]
          Length = 1448

 Score =  771 bits (1991), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/1479 (34%), Positives = 788/1479 (53%), Gaps = 146/1479 (9%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCTA 71
            ++ ++FG LS  +I   S V+I+  +    E+G+ PK  G  D ++G      +C TC  
Sbjct: 13   IKGLEFGALSAKDIVAQSEVEIQTRDLYDLEKGRVPKEHGALDTKMGISSNAQECSTCHG 72

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK-IRNP 130
            N+A C GHFGH+ LA P+FH+G+ K+++S+++ +C NC+ +L DE   +  Q L  +R P
Sbjct: 73   NLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKNCAAVLLDEQSKR--QYLNDLRKP 130

Query: 131  K-------NRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
                      +KKI++ CK + +C   + I+         +KK   G G    K+  +  
Sbjct: 131  HIDNLRRMKIIKKIIEQCKKQRRCLKCNHIN-------GVVKKAASGAGPAALKIVHDTF 183

Query: 184  KMIAEYKAQRKKNDDQE---------QLPEPVER-KQTLTAERVLGVLKRISDEDCQLLG 233
            + I + +   K   D+E         +L +  +R    L   + L + K+I+ +DC+L G
Sbjct: 184  RWIGKKETLEKTIWDEELDQVFIRNPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFG 243

Query: 234  LNP-KYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNG 283
            L+P K  RP+  I + LP PP  +RPS         DDLT +L  I+  +  +R     G
Sbjct: 244  LDPAKGGRPEMYIWRYLPAPPVCIRPSVMMDAQSNEDDLTVKLTEIVWTSSMIRAGIVKG 303

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRAT----QRSGRPIKSICSRLKAKEGRIRGN 339
               + + E    LQ  +A Y +++      +T     +S +PI++ C RLK K+GR RGN
Sbjct: 304  ISINNLMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGN 363

Query: 340  LMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 399
            L GKRVDFS RTVI+PDP + ID++ VP  +A  LTYPE  T YN ++L++L+  GP   
Sbjct: 364  LSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLIVNGPDIH 423

Query: 400  PGKTGAKYIIRDD--GQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKM 456
            PG   A Y+++ +  G+R +LR+  +      L++G  VERH+ DGD VLFNRQPSLH++
Sbjct: 424  PG---ANYVMKQNEPGKR-NLRFGDRVKLAKTLQIGDIVERHIEDGDVVLFNRQPSLHRL 479

Query: 457  SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 516
            SI+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   +++
Sbjct: 480  SILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLT 539

Query: 517  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK--VPQPTILKPRPL 574
            P+S  P++   QD + G   I+ +D+F ++   + +L    D D +  +P PTI KP  L
Sbjct: 540  PKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTIFKPVML 599

Query: 575  WTGKQVFNLII-PKQ-----INL-FRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGT 624
            WTGKQVF+L+I P +     INL  +   +H    KG+   ++  D  V I   ++LSG 
Sbjct: 600  WTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPK-KGLPNEMSPNDGFVVIRGSKILSGL 658

Query: 625  LCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKT 683
            + K TLG     S+ + I  + GP+ A   +     L   +L    FSIGI D     + 
Sbjct: 659  MDKSTLGDGKKHSVFYTILRDYGPEEAAAAMNRMAKLCARFLGNRGFSIGINDVTPADEL 718

Query: 684  METINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQK 743
             +     + +A      LI       LE +PG    ++ E K+  +L+  R+E G    +
Sbjct: 719  KQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCIR 778

Query: 744  SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPE 803
             L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHFTK+   P+
Sbjct: 779  ELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQ 838

Query: 804  SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGT 863
            S+GFV NS+  GLTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD T
Sbjct: 839  SKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQYDNT 898

Query: 864  VRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEY 923
            VRNS   ++QF YG DG+D   +E         K   F++          W+  Y L   
Sbjct: 899  VRNSSNGIVQFTYGGDGLDPYDMEGDA------KPVNFNR---------QWDHAYNLTYN 943

Query: 924  IDDLKTI-KELRDVFDAEVQKLEAD--RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTF 980
            +DD+  +  ++ ++ D+ +  LE    RY                  NL   + + +K  
Sbjct: 944  VDDVSLLPYQIEELVDSILAPLENKLIRYD-----------------NLGNALNDKEKEE 986

Query: 981  KVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFAS--- 1037
            K+           E ++  D  ++  K +   D ++ ++ + A L     L++ F +   
Sbjct: 987  KI-----------EYIDQNDGERDFYKSI--RDFITKKSTRLARLREERGLKAYFTAPNE 1033

Query: 1038 -KRVLKEHRLTREAFEWV-----------IGEIESRFLQSLVAPGEMIGCVAAQSIGEPA 1085
             + V+ E R+T  A + +           + +   ++ ++ V PG  +G + AQSIGEP 
Sbjct: 1034 DEIVMDEDRVTSNAIDQLSKISSNAVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPG 1093

Query: 1086 TQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNV-Q 1144
            TQMTL TFH+AGV++ NVTLGVPR++EIIN +K I TP ++  L   VN   E A  V +
Sbjct: 1094 TQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVL---VNDDDEIAARVAK 1150

Query: 1145 CALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIE 1203
              +E T L  V    E  Y  +     I+ D+E + K   E+  E+IA    +   L+I 
Sbjct: 1151 GRIEKTLLEDVAFYIEDVYKDNLAYLSIKVDLETIDKLQLELNLENIAVAIANAPKLKIS 1210

Query: 1204 LNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAP----KGEL 1259
             +   +  K      V+  I +   + L    +  NA  L  R++ +    P    KG  
Sbjct: 1211 QSDVSVTGKDRINVLVS--IKETKTESLRNTVDPKNA--LFFRMQHLKRALPGVCIKGLP 1266

Query: 1260 NDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
            N   A     +  I+ +   E+ + G  L  VM  E +   +TT+NH++E+ ++LGIEA 
Sbjct: 1267 NIFRA-----VINIKDDGKKELLVEGYGLKDVMNTEGIVGTKTTTNHVLEVNQILGIEAA 1321

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R +++ E+   +S  G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+
Sbjct: 1322 RGSIIKEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEK 1381

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSL 1418
            T D L DAA F ++D + GV+E I+LGQ   IGTG   L
Sbjct: 1382 TTDHLFDAAFFMKNDKIEGVSECIILGQTMSIGTGSFKL 1420


>gi|31127003|gb|AAF26621.2|AF138971_1 RNA polymerase II largest subunit [Semibalanus balanoides]
          Length = 624

 Score =  771 bits (1990), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/628 (59%), Positives = 475/628 (75%), Gaps = 8/628 (1%)

Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
           SARTVIT DP + IDQ+GVP +IALNLTYPE VTP+NI+++++LV+ G +  PG   AKY
Sbjct: 1   SARTVITADPNLRIDQVGVPKTIALNLTYPEIVTPFNIDKMQDLVKRGNNQYPG---AKY 57

Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
           IIRD+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P
Sbjct: 58  IIRDNGERIDLRFHPKPSDLHLQCGYKVERHIIDGDLVIFNRQPTLHKMSMMGHRVKVLP 117

Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
           +STFR+NLSVTSPYNADFDGDEMN+HVPQS ETRAE+  + + P+ IV+PQSN+PVMGIV
Sbjct: 118 WSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEIENMHVTPRMIVTPQSNKPVMGIV 177

Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
           QDTL   RK+TKRD F+EK+  MN+LM+   +DGK+P P I+KPRPLWTGKQ+F+LIIP 
Sbjct: 178 QDTLTAVRKMTKRDVFLEKEEMMNMLMFLPTWDGKIPVPAIIKPRPLWTGKQLFSLIIPG 237

Query: 588 QINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            +N+ RT + H D+ D G    ++ GDT V ++ GEL+ G LCKK+LG S GSL+H+ W 
Sbjct: 238 NVNMVRTHSTHPDDEDSGPYKWVSPGDTKVLVDNGELIMGILCKKSLGASAGSLLHICWL 297

Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
           E+G D A  F    Q +VN WLL    SIGIGDTI+D  T   I +TI KAK +V  +I+
Sbjct: 298 ELGHDIAGHFYHDIQSVVNAWLLYEGHSIGIGDTISDPDTYSDIQNTIRKAKEDVIQVIE 357

Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
           +A +  LEP PG T+ ++FEN VN++LN ARD+ G+SA+ SL E NNLKAMV AGSKGS 
Sbjct: 358 KAHNDELEPTPGNTLRQTFENHVNRILNDARDKTGASAKNSLGEYNNLKAMVVAGSKGSN 417

Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
           INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+F
Sbjct: 418 INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFYF 477

Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
           HAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGT+RNS+  ++Q  YGEDG+  
Sbjct: 478 HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTLRNSVAQLVQLRYGEDGLAG 537

Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            ++E Q+L ++K+  + F + F+FE   E        ++ + DL    E+    + E + 
Sbjct: 538 EFVEFQSLPTIKLSDAAFRRKFKFETTNERQLRRVFQEDIVRDLMGSGEIIGELEREWET 597

Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKR 971
           L  DR +L  +I  +G+S   LP NL+R
Sbjct: 598 LSRDRQEL-RQIFPTGESRVVLPCNLER 624


>gi|120561168|gb|ABM26979.1| RNA polymerase II largest subunit [Nosema empoascae]
          Length = 764

 Score =  770 bits (1988), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/801 (50%), Positives = 526/801 (65%), Gaps = 79/801 (9%)

Query: 92  IGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGD 151
           IG++  +  I+  +CF CSKI         K + K   P   L  +   CK KT CEG  
Sbjct: 4   IGYISKIKKILECICFYCSKI---------KISKKNSKPG--LNALWTVCKTKTVCEG-- 50

Query: 152 EIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQT 211
                     E +++   GCG +QP +  EG+ ++A  K +           +  E K  
Sbjct: 51  ----------EVMEEGHTGCGNKQPLIKKEGLNLVAFMKGE-----------DNSEGKVI 89

Query: 212 LTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DD 261
           LT ERV  + K+ISDED + LG + +Y+RP+W+IL VL +PPP VRPS          DD
Sbjct: 90  LTGERVYSIFKKISDEDIEYLGFDSQYSRPEWLILTVLLVPPPAVRPSIVMEGMLRAEDD 149

Query: 262 LTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 321
           LTH+LA II+ N  L++ E  GAP HII ++ QLLQFHIAT  DN+L GQP+A Q+SGRP
Sbjct: 150 LTHKLADIIKSNTYLKKYELEGAPGHIIRDYEQLLQFHIATLIDNDLSGQPQALQKSGRP 209

Query: 322 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 381
           +KSI +RLK KEGR+RGNLMGKRVDFSAR+VIT D  I+++++GVP  +A   T+PE +T
Sbjct: 210 LKSISARLKGKEGRVRGNLMGKRVDFSARSVITADANISLEEVGVPIEVAKIHTFPEKIT 269

Query: 382 PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 441
           P+N++RL++LVE GP+  PG   A Y+IR+DGQR+DL++     D  LE GY VERH+ D
Sbjct: 270 PFNVQRLEKLVENGPNVYPG---ANYVIRNDGQRIDLKF--NRGDIKLEEGYVVERHMQD 324

Query: 442 GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 501
           GD VLFNRQPSLHKMS+M H++++M   TFRLN SVTSPYNADFDGDEMN+H+PQSF T 
Sbjct: 325 GDIVLFNRQPSLHKMSMMAHKVRVMGGKTFRLNSSVTSPYNADFDGDEMNLHMPQSFNTI 384

Query: 502 AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL-------- 553
           +E+ E+ MV K ++ PQSN+PVMGIVQDTL G R  T RD F +K+  M I+        
Sbjct: 385 SELQEICMVSKQVLGPQSNKPVMGIVQDTLTGLRLFTLRDAFFDKNEMMQIVYSIDLERY 444

Query: 554 ----MWWEDFDGK--------------VPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
               +  E  +GK              +  P I KP+ LWTGKQ+ + I+P   N+    
Sbjct: 445 NDICLDSESREGKKNNLQSKGYNLLKLIESPAINKPKQLWTGKQILSFILP---NILYEN 501

Query: 596 AWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLG 655
             +   +       DT V I  GE++SG + K+ +G + G LIH+I  + G +    F  
Sbjct: 502 NSNEQREGDKENYSDTSVVIVNGEIVSGIIDKRAVGATQGGLIHIITNDFGSNRVTLFFD 561

Query: 656 HTQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
             + ++  +L+  + F++GIGDT+ADA+T++ +   I  AK +V  +I +AQ+  LE  P
Sbjct: 562 DIEKIITKFLMNISVFTMGIGDTVADAETLKYVRGAIDNAKVSVDEIIYKAQNNKLERLP 621

Query: 715 GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
           G TM ESFE++VN VLN ARD +G+S Q SL+  NN+  MV AGSKGSFINI Q+TACVG
Sbjct: 622 GMTMKESFESQVNYVLNKARDVSGTSTQGSLNRCNNMGTMVLAGSKGSFINILQVTACVG 681

Query: 775 QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
           QQNVEGKRIPFGF  RTLPHF K+DY  +SRGFVENSYL GL+P+EFFFHAMGGREGLID
Sbjct: 682 QQNVEGKRIPFGFAYRTLPHFPKEDYSGKSRGFVENSYLSGLSPEEFFFHAMGGREGLID 741

Query: 835 TAVKTSETGYIQRRLVKAMED 855
           TA+KT+ETGYIQRRLVKA ED
Sbjct: 742 TAIKTAETGYIQRRLVKAKED 762


>gi|13274097|emb|CAC33855.1| RNA polymerase II largest subunit [Cystosporogenes operophterae]
          Length = 982

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/1055 (42%), Positives = 627/1055 (59%), Gaps = 118/1055 (11%)

Query: 81   GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDA 140
            GH+EL+KPMFH+G++  +   +  VCF CSKI               +  KN+L + L+ 
Sbjct: 1    GHMELSKPMFHVGYLTKIKKTLECVCFYCSKI---------------KISKNKLDEGLEH 45

Query: 141  C----KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
            C    K K  CEG            E   + K GCG +QP +  EG+ +IA  K      
Sbjct: 46   CWTALKFKNICEG------------EVTSEGKTGCGNKQPSIKKEGLNLIAFMKED---- 89

Query: 197  DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
                   E  E K  L  ERV  +LK+I +ED + LG +P++ +P+WMIL  + +PPP V
Sbjct: 90   -------EYNEGKVVLNGERVYNILKKIPEEDYRFLGFHPEFCKPEWMILCAIIVPPPAV 142

Query: 257  RPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
            RPS          DDLTH+LA I+      ++ E+   P HI+ ++ QLLQFH+AT  DN
Sbjct: 143  RPSIVLNGYLRGEDDLTHKLADIVSPMPIFKKYEQEVLPGHIVRDYEQLLQFHLATLIDN 202

Query: 307  ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
            ++     A Q++GRP+K+    LK + GRIRGNLMGKRVDFSAR+VI+PDP I++ ++GV
Sbjct: 203  DIVAAT-ALQKNGRPLKASAHVLKER-GRIRGNLMGKRVDFSARSVISPDPNISVQEVGV 260

Query: 367  PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
            P  IA   T+PE V  +NI+ L+ELV+ GP+  PG   A Y+IR DGQR+DL +     +
Sbjct: 261  PVGIAKVHTFPEKVNSFNIDYLQELVDRGPNEHPG---ANYLIRSDGQRIDLNF--NRHE 315

Query: 427  HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFD 486
              LE G+ VERH+ + D VLFNRQPSLHKMS+MGHR KIM   TFRLNLS TSPYNADFD
Sbjct: 316  LKLEKGFIVERHMQNNDEVLFNRQPSLHKMSMMGHRAKIMQGKTFRLNLSATSPYNADFD 375

Query: 487  GDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK 546
            GDEMN+H+PQS+ +++E+  L  V K IVSPQSN+PV+GIVQDTL+G    T RD+F ++
Sbjct: 376  GDEMNLHMPQSYPSKSELCSLTSVSKQIVSPQSNKPVIGIVQDTLVGAFLFTIRDSFFKR 435

Query: 547  DVFMNILMWWEDFDGK------VPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHAD 600
               M++L     F  K        +PTIL+P  LWTGKQ+F+ I+P+ I   R A    D
Sbjct: 436  AEAMSLLYNLNVFGKKNQDFIDFMKPTILEPVELWTGKQIFSAILPR-IFYDRQANVGID 494

Query: 601  NDK----------GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
             D             +   D+   I+ G LL+G +   ++GT  G +I +I+ + G +AA
Sbjct: 495  QDISDRLNENKEWNTMNCTDSRTIIKNGVLLAGRIDVVSMGTKQGGIIQIIYNDCGSNAA 554

Query: 651  RKFLGHTQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
              F+   Q L+NY+LL  ++FSIGIGD IAD++T++    T+ KA +   ++I   +   
Sbjct: 555  LNFIDSIQRLINYFLLHISSFSIGIGDCIADSRTLDVCRKTVKKAMDEADDIITITKRNE 614

Query: 710  LEPEPGRTMMESFENKVNQVLNTAR------DEAGSSAQKS------LSESNNLKAMVTA 757
            L+  PG ++  +FE+KVN +LN AR      DE      K       +S +NN+K+MV +
Sbjct: 615  LDKLPGMSLSATFESKVNVILNKARNIPTISDETSERTGKKSFRSNLISPNNNMKSMVLS 674

Query: 758  GSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLT 817
            GSKGS+INISQ+T C+GQQNVEGKRIPFGF +R+LPHF K DY   SRGFV+NSY+ G+ 
Sbjct: 675  GSKGSYINISQITTCMGQQNVEGKRIPFGFNERSLPHFYKYDYTARSRGFVQNSYISGMW 734

Query: 818  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 877
            P EFFFHAMGG EG+IDT++KT+ETGYIQRRLVKA+ED   ++D +VRN  GD+ QF YG
Sbjct: 735  PDEFFFHAMGGGEGIIDTSIKTAETGYIQRRLVKALEDATAQHDYSVRNGSGDIYQFKYG 794

Query: 878  EDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENW--NPNYMLQEYIDDLKTIKELRD 935
            +D  D+  +E+ +LD    K    DK F     +EN+   P+ +  +  + ++   +L+ 
Sbjct: 795  DDSFDATHLENISLDLADFK----DKYFIDMFGDENYAIKPSQVSSDVYEMMRDDLDLQK 850

Query: 936  VFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEV 995
            + DAE + L  +R  ++          +  PVN+ R++ N     K+  +     H +  
Sbjct: 851  LLDAEYEYLYTNRALMS--------GFYSSPVNIGRILSN-----KIYLKN----HEL-- 891

Query: 996  VEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVI 1055
               V+  +    + P     S++A        +  +R +   K VL    L+   F  ++
Sbjct: 892  --TVENSKNNRTISPYVILSSLDAAMTGNKKLDYYIRISLNIKFVLLN--LSLANFNGIL 947

Query: 1056 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1090
             EI  + ++S V   EM+G +AAQS+GEPATQMTL
Sbjct: 948  DEIALKIMKSRVNANEMVGTLAAQSVGEPATQMTL 982


>gi|330791878|ref|XP_003284018.1| RNA polymerase III, largest subunit [Dictyostelium purpureum]
 gi|325086064|gb|EGC39460.1| RNA polymerase III, largest subunit [Dictyostelium purpureum]
          Length = 1396

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1446 (34%), Positives = 761/1446 (52%), Gaps = 134/1446 (9%)

Query: 18   VQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKMKCETCTANMAE 75
            +QFG+LS ++I ++S VQ+ + E  +  + KP+P G+ D +LGT D++  C TC  ++ +
Sbjct: 13   IQFGLLSEEDIVRLSHVQLVNRELFDLLKRKPQPYGVLDNKLGTSDKQQNCTTCGLSIVD 72

Query: 76   CPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPK---- 131
            C GHFG+++L  P+FHIG++K +++I++ +C NCS IL DE+  K     K+RN K    
Sbjct: 73   CVGHFGYIKLQLPVFHIGYLKNIMNILQMICKNCSSILLDEEK-KSTYLRKMRNKKLDNL 131

Query: 132  ---NRLKKILDAC---KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI--EGM 183
               + LKKI   C   K   KC+  + +       +   +K KG     Q    +  E +
Sbjct: 132  QRKSLLKKIFLDCRKTKECFKCKSTNGMIRKSGAFKIIHEKYKGKQENLQEYYALYDEAV 191

Query: 184  KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
            K   E K+  KK   QE L   V           L + K+IS +D +++ +NP   RP+ 
Sbjct: 192  KYNPEMKSHIKKA--QEDLNPLV----------ALNLFKKISYQDIEIMNMNPIVGRPER 239

Query: 244  MILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
            +IL  + +PP  +RPS           DDLT +L+ II  NE++R    + A  + I E 
Sbjct: 240  LILTYMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEIIHINEHIR-TNVDRAEMYSIMED 298

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
               LQ   A Y ++++PG P    +  +P++ +  RLK K GR RGNL GKRVDFS RTV
Sbjct: 299  WDYLQATCAIYINSDVPGLP-LQMKPTKPVRGLSQRLKGKTGRFRGNLSGKRVDFSGRTV 357

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
            I+PDP +NID++ VP  IAL +TYPE V+ YNIERL++ V  GP   PG   A YII  D
Sbjct: 358  ISPDPNLNIDEVAVPQLIALTMTYPERVSDYNIERLQKYVINGPDRHPG---ANYIIYQD 414

Query: 413  GQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
            G +  L++  +      L++G  VERH+ DGD +LFNRQPSLHK+SIM H+ ++MP+ T 
Sbjct: 415  GVKKWLKFGNREKFAAELKVGDIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVMPWRTL 474

Query: 472  RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
            R N  V +PYNADFDGDEMN+H+PQ+ E RAE   LM V   +++P++  P++   QD L
Sbjct: 475  RFNECVCTPYNADFDGDEMNIHLPQTEEARAEATILMGVTNNLITPRNGEPLVAATQDFL 534

Query: 532  LGCRKITKRDTFIEKDVFMNILMWWEDFDGKV--PQPTILKPRPLWTGKQVFNLIIPKQI 589
                 I++RD F ++  F  +   + D +  +  P P ILKP  LWTGKQ+F +++   +
Sbjct: 535  TASYLISRRDAFYDRYRFTLMCTHFADANEHIDLPPPAILKPIELWTGKQIFEVLLRPSV 594

Query: 590  NLFRTAAWHADN---DKGI-LTAGDTLVRIEKGELLSGTLCKKTLGT-STGSLIHVIWEE 644
                   +   +    K + +   D  V     EL+ G++ K  +G  +  SL H++  +
Sbjct: 595  KSHVLCTFETKSRTYSKNLYMCPKDGYVYFRNSELMCGSIDKSIIGGGNKNSLFHILMRD 654

Query: 645  VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
              P  A   +     L   +L    FSIGI D        +   D I  A +     +K 
Sbjct: 655  FSPSIAANSMTRLAKLCARFLGDQGFSIGIPDVQPAPDLDQRKRDIIETAYSKCDQFLKD 714

Query: 705  AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
             ++ +L    G +M ++FE K+NQ L+  RD+ G      L   N+   M   GSKGS I
Sbjct: 715  FENGNLPVASGCSMEQTFEAKMNQTLSQIRDDCGKLCVNDLPNYNSPLIMGLCGSKGSNI 774

Query: 765  NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
            NI+QM  CVGQQ V G RIP GF +RT PHF       +++GFV NS+  G+ P EFFFH
Sbjct: 775  NIAQMICCVGQQIVNGTRIPNGFTNRTTPHFLHFQKNAKAKGFVSNSFYTGMIPTEFFFH 834

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
             MGGREGL+DTAVKT+ETGY+QRRL+KA+ED+   YD TVR+S G ++QF YG+DG+D  
Sbjct: 835  TMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRDSFGGIVQFCYGDDGLDPA 894

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQ--EYIDDLKTIKELRDVFDAEVQ 942
             +E++      ++  +  K+ R  ++E    P  + +  E I   K   E  D+F  E+ 
Sbjct: 895  GMEAKDRPVDFLRAMQAVKSTRRCINERALLPFEIRKKVEVIIKGKAFAECTDLFKEEIL 954

Query: 943  KLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKL 1002
            +                                    F   P++         +E + KL
Sbjct: 955  EF-----------------------------------FIGKPKQTG------YIEELIKL 973

Query: 1003 QERLKVVP-GEDPLSVE---AQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
            + +  +    ED  ++E    ++N  L  +  +      + V + HR+T    E  +   
Sbjct: 974  RNQFGLKEYTEDTANIEDALERENEELSIDERIARESNQQVVDQIHRITSTQVELFLDIC 1033

Query: 1059 ESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK 1118
              ++ ++ + PG  +G + AQSIGEP TQMTL TFH+AGV++ NVTLGVPR++EIIN AK
Sbjct: 1034 LDKYNRAKIEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINGAK 1093

Query: 1119 KIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEF 1178
             I TP ++  L    ++    A+ V   +E TTL  V E  +           I+ D +F
Sbjct: 1094 NISTPIITASL--NCDNDIRSARIVAGRIEKTTLGHVAEHIKEVVKRGGCYLSIKIDKKF 1151

Query: 1179 VKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQ-----EFDDDLT- 1232
            + S                  L++E+N   +    LS   +  K++Q     E+   +T 
Sbjct: 1152 IDS------------------LQLEINARTIAQSILSTKGLKLKVDQVSALSEYKLRITP 1193

Query: 1233 ---CIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKI-ESNMLTEMALRGVNL 1288
               C       ++ +  ++ + +  P   +      + V + KI E     ++ + G +L
Sbjct: 1194 PGNC------REQTLYYLQSLKNNLPSVIVKGIPTINRVVISKIDEKQERYQLLVEGYDL 1247

Query: 1289 LAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCD 1348
             AVM    +    TTSNH++E    LGIE  R  ++ E++++++  G  ++ RH+ +L D
Sbjct: 1248 RAVMATSGIKGTHTTSNHIMECENTLGIETARNTIMSEIQMIMTSHGMSIDVRHVMLLAD 1307

Query: 1349 TMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQL 1408
             M+++G ++ ITR GI +     +M  SFE+T D L DAAV    D + GV+E I++G +
Sbjct: 1308 LMSFKGEILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHHRQDDIVGVSECIIMGSV 1367

Query: 1409 APIGTG 1414
             P+GTG
Sbjct: 1368 IPLGTG 1373


>gi|238881190|gb|EEQ44828.1| DNA-directed RNA polymerase III largest subunit [Candida albicans
            WO-1]
          Length = 1448

 Score =  769 bits (1985), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/1478 (34%), Positives = 787/1478 (53%), Gaps = 120/1478 (8%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCTA 71
            ++ ++FG LS  +I   S V+I+  +    E+G+ PK  G  D ++G      +C TC  
Sbjct: 13   IKGLEFGALSAKDIVAQSEVEIQTRDLYDLEKGRVPKEHGALDTKMGISSNAQECSTCHG 72

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK-IRNP 130
            N+A C GHFGH+ LA P+FH+G+ K+++S+++ +C +C+ +L DE   +  Q L  +R P
Sbjct: 73   NLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLDEQSKR--QYLNDLRKP 130

Query: 131  K-------NRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
                      +KKI++ CK + +C   + I+         +KK   G G    K+  +  
Sbjct: 131  HIDNLRRMKIIKKIIEQCKKQRRCLKCNHIN-------GVVKKAASGAGPAALKIVHDTF 183

Query: 184  KMIAEYKAQRKKNDDQE---------QLPEPVER-KQTLTAERVLGVLKRISDEDCQLLG 233
            + I + +   K   D+E         +L +  +R    L   + L + K+I+ +DC+L G
Sbjct: 184  RWIGKKETLEKTIWDEELDQVFIRNPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFG 243

Query: 234  LNP-KYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNG 283
            L+P K  RP+  I + LP PP  +RPS         DDLT +L  I+  +  +R     G
Sbjct: 244  LDPAKGGRPEMYIWRYLPAPPVCIRPSVMMDAQSNEDDLTVKLTEIVWTSSMIRAGIVKG 303

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRAT----QRSGRPIKSICSRLKAKEGRIRGN 339
               + + E    LQ  +A Y +++      +T     +S +PI++ C RLK K+GR RGN
Sbjct: 304  ISINNLMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGN 363

Query: 340  LMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 399
            L GKRVDFS RTVI+PDP + ID++ VP  +A  LTYPE  T YN ++L++LV  GP   
Sbjct: 364  LSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIH 423

Query: 400  PGKTGAKYIIRDD--GQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKM 456
            PG   A Y+++ +  G+R +LR+  +      L++G  VERH+ DGD VLFNRQPSLH++
Sbjct: 424  PG---ANYVMKQNEPGKR-NLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRL 479

Query: 457  SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 516
            SI+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   +++
Sbjct: 480  SILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLT 539

Query: 517  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK--VPQPTILKPRPL 574
            P+S  P++   QD + G   I+ +D+F ++   + +L    D D +  +P PTI KP  L
Sbjct: 540  PKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTIFKPVML 599

Query: 575  WTGKQVFNLII-PKQ-----INL-FRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGT 624
            WTGKQVF+L+I P +     INL  +   +H    KG+   ++  D  V I   ++LSG 
Sbjct: 600  WTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPK-KGLPNEMSPNDGFVVIRGSKILSGL 658

Query: 625  LCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKT 683
            + K TLG     S+ + I  + GP  A   +     L   +L    FSIGI D     + 
Sbjct: 659  MDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGINDVTPADEL 718

Query: 684  METINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQK 743
             +     + +A      LI       LE +PG    ++ E K+  +L+  R+E G    +
Sbjct: 719  KQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCIR 778

Query: 744  SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPE 803
             L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHFTK+   P+
Sbjct: 779  ELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQ 838

Query: 804  SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGT 863
            S+GFV NS+  GLTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD T
Sbjct: 839  SKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQYDNT 898

Query: 864  VRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEY 923
            VRNS   ++QF YG DG+D   +E         K   F++          W+  Y L   
Sbjct: 899  VRNSSNGIVQFTYGGDGLDPYDMEGDA------KPVNFNR---------QWDHAYNLTYN 943

Query: 924  IDDLKTI-KELRDVFDAEVQKLEAD--RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTF 980
            +DD   +  ++ ++ D+ +  LE    RY                  NL   + + +K  
Sbjct: 944  VDDASLLPYQIEELVDSVLAPLENKLIRYD-----------------NLGNALNDKEKEQ 986

Query: 981  KVDPRRPSDMHPMEVVEAVDKLQER-LKVVPGEDPLSVEAQKNATLFFNILL-RSTFASK 1038
            K++    +D          D L ++ +++    +   ++A   A     I++   T   K
Sbjct: 987  KIEYIDQNDGERDFYKSIRDFLTKKSIRLARLREERGLKAYFTAPTEDEIVMDEDTVKVK 1046

Query: 1039 RVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1098
             + +  +++ +A +  + +   ++ ++ V PG  +G + AQSIGEP TQMTL TFH+AGV
Sbjct: 1047 AIDQLSKISSKAVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGV 1106

Query: 1099 SAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNV-QCALEYTTLRSVTE 1157
            ++ NVTLGVPR++EIIN +K I TP ++  L   VN   E A  V +  +E T L  V  
Sbjct: 1107 ASMNVTLGVPRIKEIINASKVISTPIINAVL---VNDDDEIAARVAKGRIEKTLLEDVAF 1163

Query: 1158 ATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSM 1216
              E  Y  +     I+ D+E + K   E+  E+IA    +   L+I  +   +  K    
Sbjct: 1164 YIEDVYKDNLAYLSIKIDLETIDKLQLELNLENIAVAIANAPKLKIAQSDVSVTGK--DR 1221

Query: 1217 AAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAP----KGELNDESAEDDVFLKK 1272
              V   I +   + L    +  NA  L  R++ +    P    KG  N   A     +  
Sbjct: 1222 INVLVNIKETKTESLRNTVDPKNA--LFFRMQYLKRALPGVCIKGLPNIFRA-----VIN 1274

Query: 1273 IESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
            I+ +   E+ + G  L  VM  E +   +TT+NH++E+ ++LGIEA R +++ E+   +S
Sbjct: 1275 IKDDGKKELLVEGYGLKDVMNTEGIVGTKTTTNHVLEVNQILGIEAARGSIIKEIDYTMS 1334

Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
              G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T D L DAA F +
Sbjct: 1335 NHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMK 1394

Query: 1393 SDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIE 1430
            +D + GV+E I+LGQ   IGTG   L  +    K A++
Sbjct: 1395 NDKIEGVSECIILGQTMSIGTGSFKLVKSSNCEKKALK 1432


>gi|328874135|gb|EGG22501.1| RNA polymerase III [Dictyostelium fasciculatum]
          Length = 1507

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/1455 (33%), Positives = 768/1455 (52%), Gaps = 133/1455 (9%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGE--TTERGKPKPGGLSDPRLGTIDRKMKCETCTA 71
            K+  +QFGILSP+++ ++S V I + E  + E+  P P G  D +LGT D+ + C+TC  
Sbjct: 106  KIGHIQFGILSPEDMIRLSHVHIINRELFSQEKRAPMPYGCLDNKLGTSDKGVNCQTCGL 165

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPK 131
            ++ +C GHFG+++L  P+FHIG+ K + +I++ +C NCS +L D D+ K     K+RN K
Sbjct: 166  SIVDCVGHFGYIDLQLPVFHIGYFKNITNILQMICKNCSTVLLD-DEPKATYLRKMRNRK 224

Query: 132  -------NRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
                      KK+   C+ K  C   + ++        P+KK             +  +K
Sbjct: 225  LDVLQRRALFKKVYTDCRKKKICPKCNSVN-------GPVKK-------------VSALK 264

Query: 185  MIAE-YKAQRKKNDDQEQLPEPVE-----RKQTLTAER------VLGVLKRISDEDCQLL 232
            +I E YK + +  D  EQ  + ++     R     A+       V  + KRIS +D +LL
Sbjct: 265  LIHEKYKKEEEHRDLIEQFEDALKANAEMRNHVKKAQEDLNPLVVFNLFKRISYQDTELL 324

Query: 233  GLNPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQER 281
             ++P   RP+ +IL  L +PP  +RPS           DDLT +L+ I+  N++++    
Sbjct: 325  DMDPDVGRPERLILTHLLVPPVSIRPSVPMDGGSGSNEDDLTMKLSEILHINDHIKTNVD 384

Query: 282  NGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLM 341
                  ++ ++   LQ  +A Y ++ELPG P    +  +PI+ +  RLK K GR RGNL 
Sbjct: 385  RLEMQAVVEDW-DYLQASVAIYINSELPGLP-LQMKPQKPIRGLSQRLKGKTGRFRGNLS 442

Query: 342  GKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPG 401
            GKRVDFS RTVI+PDP +NID++ +P  IA+ +TYPE  T +NI+RL++ +  GP   PG
Sbjct: 443  GKRVDFSGRTVISPDPNLNIDEVAIPQLIAVTMTYPERCTSFNIQRLQKYIINGPDKHPG 502

Query: 402  KTGAKYIIRDDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMG 460
               A YII  DG++  L+Y  +      L++G  VERHL DGD +LFNRQPSLHK+SIM 
Sbjct: 503  ---ANYIIYPDGEKKWLKYGNREKFAAELKIGDIVERHLIDGDVMLFNRQPSLHKLSIMC 559

Query: 461  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
            H+ ++MP+ T R N  V +PYNADFDGDEMN+H PQ+ E RAE L LM V   +++P++ 
Sbjct: 560  HKARVMPWRTLRFNECVCTPYNADFDGDEMNIHCPQTEEARAEALILMGVTNNLITPRNG 619

Query: 521  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV--PQPTILKPRPLWTGK 578
             P++   QD L     I++RD F ++  F  +   + D    +  PQPTI+KP  LWTGK
Sbjct: 620  EPLVAATQDFLTSSYLISRRDAFYDRARFTQMCTHFADAYEHIDLPQPTIVKPIELWTGK 679

Query: 579  QVFNLIIPKQINLFRTAAWHADN----DKGILTAGDTLVRIEKGELLSGTLCKKTLGT-S 633
            Q+F +++   +       +  ++        +   D  V     EL+ G++ K  +G  +
Sbjct: 680  QLFEVLLRPSVKSHVLVNFETNSRTYTKNTYMCPRDGYVCFRNSELMCGSIDKSIIGGGN 739

Query: 634  TGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISK 693
              SL HV+  +  P  A   +     L   +L    FSIGI D           +  I +
Sbjct: 740  KDSLFHVLMRDFTPAIAANAMTRLAKLCARFLGDQGFSIGIPDVKPSPDLNAKKDAIIKR 799

Query: 694  AKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKA 753
            A +     + + +   L    G T+ ++ E ++NQ+L+  RDE G      L   N+   
Sbjct: 800  AHDKCDVFLTEYKSGRLAAASGCTVEQTLEARMNQILSGIRDECGKLCVSELPHYNSPLI 859

Query: 754  MVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYL 813
            M   GSKGS INI+QM ACVGQQ V G RIP GF +RT PHF      P+++GFV NS+ 
Sbjct: 860  MALCGSKGSNINIAQMIACVGQQIVNGTRIPNGFTNRTTPHFPHFSREPKAKGFVGNSFY 919

Query: 814  RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQ 873
             G+ P EFFFH MGGREGL+DTAVKT+ETGY+QRRL+KA+ED+  +YD TVR+S G ++Q
Sbjct: 920  TGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTQYDYTVRDSTGGIVQ 979

Query: 874  FLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKEL 933
            F+YG+DG+D   +E++      ++     K  R   DE+   P + +++Y++ +      
Sbjct: 980  FIYGDDGLDPAGMEAKERPVDFIRAMLAVKNRRQCRDEKTLRP-FEIKKYLEGV------ 1032

Query: 934  RDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPM 993
                      L+ +++   TE       ++                F   P++ +     
Sbjct: 1033 ----------LDGNKFIQCTEYFKEEIRTY----------------FYGKPKKGNSKEVE 1066

Query: 994  EVVEAVDKLQERLKVVPGED---------PLSVEAQKNATLFFNILLRSTFASKR--VLK 1042
              +E + +L++ L++ P  D         P+  E     +   +   R  F  K   V +
Sbjct: 1067 GYIEELVRLRKFLQLPPMLDEDEDIESCGPVDTEMGDATSAGDSYDARFAFKDKEQTVDQ 1126

Query: 1043 EHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKN 1102
             HR+T    +  +     ++ ++ + PG  +G + AQSIGEP TQMTL TFH+AGV++ N
Sbjct: 1127 LHRITTTQMDQFLDICLDKYNRARIEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMN 1186

Query: 1103 VTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVW 1162
            VTLGVPR++EIIN +K I TP ++  L    +     A+ V   +E TTL  ++   +  
Sbjct: 1187 VTLGVPRIKEIINASKTISTPIITATL--NCDDDIRAARIVTGRIEKTTLGQISVYIKEV 1244

Query: 1163 YDPDPMGTIIEEDVEFVKSY-YEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAE 1221
            +        ++ D  F+ S   E+  E I    +    L++         K  ++  + E
Sbjct: 1245 FRSGGCYLSVKIDKHFIDSMQIEVSAESIKASILGTKGLKL---------KPANIETLGE 1295

Query: 1222 KINQEFDDDLTCIFNDDNADKLIL-RIRIMNDEAPKGELNDESAEDDVFLKK-IESNMLT 1279
            K+          I   ++  +LIL  ++ + +  P   ++     + V + K  E     
Sbjct: 1296 KLR---------IKPPEHNRRLILYSLQFLKNNLPNVIVHGIPTVNRVVISKPNEKEDKY 1346

Query: 1280 EMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVN 1339
            ++ + G +LL VM    +    T SNH++E+ +VLGIEAVR  ++ E+++++   G  ++
Sbjct: 1347 QLLVEGYDLLKVMATPGIKGTHTCSNHIMEVEKVLGIEAVRSIIISEIQMIMVSHGMSID 1406

Query: 1340 YRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGV 1399
             RH+ ++ D M ++G ++ ITR GI +     +M  SFE+T D L DAAV    D + GV
Sbjct: 1407 IRHIMLMADLMCFKGEILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHRRQDDIVGV 1466

Query: 1400 TENIMLGQLAPIGTG 1414
            +E I++G   P+GTG
Sbjct: 1467 SECIIMGIPVPLGTG 1481


>gi|402468610|gb|EJW03738.1| hypothetical protein EDEG_01976 [Edhazardia aedis USNM 41457]
          Length = 2270

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/1288 (38%), Positives = 718/1288 (55%), Gaps = 201/1288 (15%)

Query: 556  WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRI 615
            ++D    +P+PTIL+P  L+TGKQ+F+  +PK INL +T +             D  V I
Sbjct: 977  FDDNITDMPRPTILRPVVLYTGKQIFSWSLPK-INL-KTKS-----------TDDRTVLI 1023

Query: 616  EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLV-NYWLLQNAFSIGI 674
              G +  G + KK++GT  G +IHVI+ + G +  RKF    Q +V  Y  + ++FS+GI
Sbjct: 1024 VDGNVHQGVIDKKSVGTVEGGIIHVIYNDFGSNECRKFFDSLQKIVCTYMAIISSFSVGI 1083

Query: 675  GDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR 734
            GDT+      E I+++I  A + V+ +I      +L+  PG ++ ESFE+ +N  LN AR
Sbjct: 1084 GDTVPSKTLKEHIDESIDAAISEVQKIIDDPT--TLQRLPGMSLRESFESCINMSLNKAR 1141

Query: 735  DEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPH 794
            + +G+ AQK L ESNN+K MV AGSKGS INISQMTACVGQQN+EGKRIPFGF +RTLPH
Sbjct: 1142 NISGNCAQKELRESNNVKQMVLAGSKGSIINISQMTACVGQQNMEGKRIPFGFRNRTLPH 1201

Query: 795  FTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAME 854
            F KDDYG  S+GFV NSYL GLTP+EF+FHAMGGREGLIDTAVKT+ETGYIQRRLVKAME
Sbjct: 1202 FCKDDYGARSKGFVRNSYLLGLTPEEFYFHAMGGREGLIDTAVKTAETGYIQRRLVKAME 1261

Query: 855  DIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE----------SQTLDSLKMKKSEFDKA 904
            D+ + +DG+VR+  G + QF+YG+DG+    IE           + L  +K         
Sbjct: 1262 DLKISFDGSVRSGNGSLTQFMYGDDGLCGENIERCRPFQYNEMEKALSKVKKDALNNLLD 1321

Query: 905  FRFEMDEENWNP--------------------NYMLQEYIDDLKTIKELRDVFDA----- 939
                  +E  N                     N  +   I  L  I E+R  F       
Sbjct: 1322 NNNITSQERNNAGENIIETQSQEVSLNNGKINNLEVMAKILTLNAIPEIRKDFLTNNFLV 1381

Query: 940  -EVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
             E++ L++++         + + ++ +PVNL RLIWNA++ ++      + +  + + E 
Sbjct: 1382 NELEHLQSNK---------AFNMTYYMPVNLSRLIWNAKRFYE------TTLSNISIREY 1426

Query: 999  VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
              K+ + L+ V  +  +     K    +        + S   L  +R+ ++ F+++I  I
Sbjct: 1427 NSKMTDLLQFVE-KSIIHFSRDKKIMEYL-----KAYLSLSNLLHNRINKKQFKYIINSI 1480

Query: 1059 ESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK 1118
            + +  +S+    EM+G +AAQS+GEPATQMTLNTFH AGV A  VTLGVPRL+E+IN+AK
Sbjct: 1481 KDKLGRSIAILNEMVGTLAAQSVGEPATQMTLNTFHLAGV-ASTVTLGVPRLKEVINIAK 1539

Query: 1119 KIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEF 1178
             +KTPS+ +F       + + AK  Q  +EY  L+ +TE  +V Y+PD + T+IEED +F
Sbjct: 1540 TLKTPSMKLFPTEEYGKSMDDAKKAQILIEYAGLKDITEHVQVVYEPDWLSTVIEEDRDF 1599

Query: 1179 VKSYYEMPDE-DIAPEKI-SPWLLRIELNREMMVDKKLSMAAVAEKINQ----------- 1225
            V +++E+ DE ++  E++   +++RI L+RE ++ K L +  V E I +           
Sbjct: 1600 VSTHFELADEAEVEKEQMYGSYVIRIVLDREKLLGKALLVKDVVESIEKICNKQKGKPHD 1659

Query: 1226 --------------EFDDDLTCIFND---------------------------------- 1237
                            + +    FND                                  
Sbjct: 1660 RIDLGLRNTMREGSRIEQEQNTFFNDSNSLIHDSSQPHRTVFIQGTPAQKDASFVSIMAS 1719

Query: 1238 -DNADKLILRIRIMNDEAPKGELNDESAE------------DDVFLKKIESNMLTEMALR 1284
             +N++ L++RIR M D   + E+ D   +              VF+  +E N        
Sbjct: 1720 DENSELLVIRIRSMCD--TQDEVMDLMEKIMSVHLAGYKNIKKVFI--VEENNQFIFQTE 1775

Query: 1285 GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1344
            GVNL  ++    +D  +  SN++IE+ EVLGIEA R  +L ELR VI  +G YVN RHL 
Sbjct: 1776 GVNLHDLLSCPIIDNTKVYSNNIIEVCEVLGIEAAREVILKELRSVIENEG-YVNIRHLM 1834

Query: 1345 ILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIM 1404
            +L D MT  G L  ITRHG+NRN+   +MRCSFEETV+IL++AA+  E    R VTE I+
Sbjct: 1835 LLADVMTVNGILCGITRHGVNRNEKSALMRCSFEETVEILMEAAIIGEKTQCREVTECII 1894

Query: 1405 LGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPG 1464
            LGQ  PIGTG   L+++ + LK+A+E+    +   LE      RSP SG           
Sbjct: 1895 LGQNVPIGTGLTELFIDIQKLKDAVEICDKDF--ELE-----VRSPNSG----------- 1936

Query: 1465 YLFSPNLRL-SPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS 1523
              +SP + L SP+ +   SP   G A+   SSP +S +  GYSP S GYSP SPGY+ TS
Sbjct: 1937 --YSPIIGLWSPIPED--SPL--GKAYKIESSPSHS-TQGGYSPISAGYSPISPGYN-TS 1988

Query: 1524 PG--YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT--SPSYSPTS--PSYSPTSPSYSP 1577
            P   YSP SPGY  T   +SPSSP Y P SP+Y+P+  SPS  P S   +Y+P+SP+Y+P
Sbjct: 1989 PNATYSPVSPGYG-TIGGFSPSSPSYIPASPSYTPSGFSPSGMPISGTNAYAPSSPTYAP 2047

Query: 1578 TSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP----AYSPTSPAYS----PTS 1628
            +SP+Y SP +P    +S   + TSPSY+P+  +++   P    A++P SPAYS    P S
Sbjct: 2048 SSPAYNSPFTPGVQ-SSAQNTVTSPSYTPSVSSFASNRPTNSSAFTPVSPAYSSSRQPGS 2106

Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG--YSPTSPSYSPTSPT 1686
                P +  Y+PTSPSY+P+S     ++  Y+P SP+Y+ +  G  Y P++ SY+PTSP+
Sbjct: 2107 ILNRPMNLGYTPTSPSYNPSSTFGRSSNVGYTPVSPSYTGSFQGSAYRPSNLSYAPTSPS 2166

Query: 1687 YSPTSPSYNPQSAK--YSPSLAYSPSSP 1712
            Y+  +    P++ K   +P   + P SP
Sbjct: 2167 YTSINSMMPPKTPKPVTTPVTKFVPQSP 2194



 Score =  549 bits (1415), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 275/566 (48%), Positives = 371/566 (65%), Gaps = 45/566 (7%)

Query: 15  VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMA 74
           ++ VQFG+ SP +I+Q SV+ ++H ET E G PK  GLSDPR+G ID ++ C TC  N  
Sbjct: 14  IKSVQFGLFSPVKIKQHSVLHVQHPETLENGMPKESGLSDPRMGVIDNQLLCSTCNLNCM 73

Query: 75  ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRL 134
           EC GHFGH+EL KP+FH+ F+  +  ++ +VCF CS I   + D++ ++    +  K++ 
Sbjct: 74  ECQGHFGHIELCKPVFHVNFLNRIKKVLETVCFYCSSIKNSKTDNEEQKNSDSQMVKSKS 133

Query: 135 -------KKILDACKNKTKCEGGD---EIDVPGQDGEEPLKK----NKGG-----CGAQQ 175
                  +  +    N T  E      +  +P       L K    NK       CG +Q
Sbjct: 134 LSTSSGNESTIGKSSNGTSQEESMIRPQCSIPKTSLRNALNKVWAANKTKFTCDVCGNKQ 193

Query: 176 PKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLN 235
           P +  EGM ++A       KN D        E K  LTAE+  G+LK+ISDED   LG +
Sbjct: 194 PIIRKEGMNLLA-----FMKNTD-------TEGKVILTAEKAYGILKKISDEDIVKLGFD 241

Query: 236 PKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPA 286
            +++RP+WMIL  L + PP  RP+         DDLTH+ A II+ N NLRR E  GAP+
Sbjct: 242 IEHSRPEWMILTTLLVSPPSCRPAVQMDNLRGEDDLTHKYADIIKANNNLRRYETEGAPS 301

Query: 287 HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
           HI+ ++ QLLQFH+AT  DNE+ GQP+A Q++GRP+KS+ +RLK KEGR+R NLMGKRVD
Sbjct: 302 HILRDYEQLLQFHVATLMDNEISGQPQALQKNGRPLKSLSARLKGKEGRLRYNLMGKRVD 361

Query: 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
           FSARTVITPDP I++D++G+P+++A+  T+ E V   NI+ L+ELV  GP   P   GA 
Sbjct: 362 FSARTVITPDPNISLDEVGIPFTVAMTHTFSEHVNLLNIDYLRELVNNGPSKHP---GAN 418

Query: 407 YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
           Y+IR DGQR+DLR+ +  SD +L++GY VERHL DGD VLFNRQPSLHKMS+M HR+++M
Sbjct: 419 YVIRTDGQRIDLRFNR--SDVNLQVGYVVERHLKDGDIVLFNRQPSLHKMSMMAHRVRVM 476

Query: 467 PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
              TFRLNLSVT+PYNADFDGDEMN+H PQ   +  E+ +L  V K +VSPQSN+PVMGI
Sbjct: 477 QKKTFRLNLSVTTPYNADFDGDEMNLHAPQGLLSAVELRQLASVTKQVVSPQSNKPVMGI 536

Query: 527 VQDTLLGCRKITKRDTFIEKDVFMNI 552
           VQD+L+G R++T  ++FIE    M I
Sbjct: 537 VQDSLIGVRRLTSDNSFIELKDAMQI 562



 Score =  126 bits (317), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/249 (40%), Positives = 139/249 (55%), Gaps = 49/249 (19%)

Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1627
            SP S  YSP    +SP  P  SP   +Y   +SPS+S T   YSP S  YSP SP Y+ T
Sbjct: 1932 SPNS-GYSPIIGLWSPI-PEDSPLGKAYKIESSPSHS-TQGGYSPISAGYSPISPGYN-T 1987

Query: 1628 SP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
            SP  +YSP SP Y  T   +SP+SPSY P SPSY+P+   +SP+    S T+ +Y+P+SP
Sbjct: 1988 SPNATYSPVSPGYG-TIGGFSPSSPSYIPASPSYTPS--GFSPSGMPISGTN-AYAPSSP 2043

Query: 1686 TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP----SY 1741
            TY+P+SP+YN            SP +P +  ++  + TSP+Y+P+ SS++   P    ++
Sbjct: 2044 TYAPSSPAYN------------SPFTPGVQSSAQNTVTSPSYTPSVSSFASNRPTNSSAF 2091

Query: 1742 SPSSPTYSPS--------SPYNAGGGNPDYSPSSPQYSPSA--------GYSPSAPGYSP 1785
            +P SP YS S         P N G     Y+P+SP Y+PS+        GY+P +P Y+ 
Sbjct: 2092 TPVSPAYSSSRQPGSILNRPMNLG-----YTPTSPSYNPSSTFGRSSNVGYTPVSPSYTG 2146

Query: 1786 S-STSQYTP 1793
            S   S Y P
Sbjct: 2147 SFQGSAYRP 2155



 Score = 79.0 bits (193), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 75/157 (47%), Gaps = 31/157 (19%)

Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
            SP S  YSP    +SP  P  SP   AY   S     T   YSP S  YSP SP YN   
Sbjct: 1932 SPNS-GYSPIIGLWSPI-PEDSPLGKAYKIESSPSHSTQGGYSPISAGYSPISPGYNT-- 1987

Query: 1699 AKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGG 1758
                            SP + YSP SP Y  T   +SP+SPSY P+SP+Y+PS       
Sbjct: 1988 ----------------SPNATYSPVSPGYG-TIGGFSPSSPSYIPASPSYTPSG------ 2024

Query: 1759 GNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
                +SPS    S +  Y+PS+P Y+PSS +  +P T
Sbjct: 2025 ----FSPSGMPISGTNAYAPSSPTYAPSSPAYNSPFT 2057


>gi|425778039|gb|EKV16185.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
 gi|425781413|gb|EKV19382.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
          Length = 2075

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 501/1460 (34%), Positives = 770/1460 (52%), Gaps = 138/1460 (9%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPK---PGGLSDPRLGTIDRKMKCETCTA 71
            ++ ++FG+L+ D+I   +VV++   +  +  + +     G  D R+G  ++   C TC  
Sbjct: 651  IKELKFGVLTNDDIVGQAVVEVSDRKFFDLDQTRTVVANGPLDQRMGISNKTDACATCGN 710

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP- 130
            N+ +C GHFGH+ L  P FH+G+ K V+SI++ +C  CS IL  E + +     ++R P 
Sbjct: 711  NLKDCNGHFGHVRLILPSFHVGYFKRVISILQEICKECSNILLPEAERR-SYLREMRRPG 769

Query: 131  ------KNRLKKILDACKNKTKCEGGDEID-VPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
                      K+I + C+   +C     I+ V  + G   LK       A    ++++  
Sbjct: 770  LDNLRRTQIAKRINERCRKTRECTYCGAINGVVKKTGTSALKITHDKFRAFNVSVSVKKQ 829

Query: 184  KMIAE------YKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
              I++      +   R  N D E+  +  +    +   RVL + K++SD DC+L+G+NPK
Sbjct: 830  TPISKDVFDNSFLEARGANPDVEKHFKKAQ--DDMNPLRVLKLFKKMSDSDCELIGMNPK 887

Query: 238  YARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
             ARP+  + Q +P PP  +RPS         DDLT +L  I++ N NL+     GAP   
Sbjct: 888  EARPEMFLWQFIPAPPVCIRPSVGQDGASTEDDLTAKLGDIVQSNINLKNALLKGAPVQT 947

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            I E    +Q  IA Y ++++PG  +A    G+PI+    RLK K+GR RGNL GKRVDFS
Sbjct: 948  IMECWDYMQLQIAVYINSDVPGLNKADL--GKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 1005

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
             RTVI+PDP + +D++ VP  +A N+TYPE VT YN E+L++ +  G +  PG   A  I
Sbjct: 1006 GRTVISPDPNLRVDEVAVPELVAKNMTYPELVTRYNKEKLQQRICNGSNKWPG---ANLI 1062

Query: 409  IRDD-GQRLDLRY--LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
            ++   G R  L+Y   ++ +D  L+ G  VERHL DGD VLFNRQPSLHK+SI+ H  KI
Sbjct: 1063 VKKGTGFRQMLKYSNTQRMADA-LQEGDLVERHLEDGDIVLFNRQPSLHKLSILSHFAKI 1121

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
             P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE +ELM V   + +P++  P++ 
Sbjct: 1122 RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGEPIIS 1181

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWW----EDFDGKVPQPTILKPRPLWTGKQVF 581
             +QD +     ++ +D F ++  F  I ++       FD  +P P++LKP+ +WTGKQVF
Sbjct: 1182 AIQDFISAAYVLSSKDNFFDRASFTQICLYMLGPETRFD--LPPPSVLKPQMMWTGKQVF 1239

Query: 582  NLII------PKQINL---FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGT 632
            N+++      P  +NL    R      D     L   D  + I   E++ G + K T+G+
Sbjct: 1240 NILMRPNSSDPVMVNLDAACREFKMPKDGRPKDLDPNDGWLVIRNSEVMCGVMDKSTIGS 1299

Query: 633  ST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTI 691
                ++ +++  + GP AA + +     L   W     FSIGIGD    A  +++ ND +
Sbjct: 1300 GKKDNVFYIMLRDFGPPAAAEGMNRLSKLSARWFTNIGFSIGIGDVYPSAGLVQSKNDLV 1359

Query: 692  SKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNL 751
              A +    +I + +  +LE  PG   +++ EN+++ +L+  R +AG    K LS+ N+ 
Sbjct: 1360 EAAYSQCDEVIAKYKAGTLEKYPGCDELQTMENQISGILSKVRQQAGDECIKQLSKYNSP 1419

Query: 752  KAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENS 811
              M T+GSKGS IN+SQM A VGQQ + G+R+  GF DRTLPHF K+   P S+GFV NS
Sbjct: 1420 LIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNS 1479

Query: 812  YLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 871
            +  GL P EF FHAM GREGL+DTAVKT+ETGY+ RRL+K++ED+   YD TVRNS   +
Sbjct: 1480 FFSGLEPPEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSMYDDTVRNSSAAI 1539

Query: 872  IQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF------RFEMDEENWNPNYMLQEYID 925
            +QF YG+D +D V +E       K K   FD+ F       +  DE +  P         
Sbjct: 1540 VQFQYGDDKLDPVDMEG------KAKPVHFDRTFIHSESTTYNNDERSLLP--------- 1584

Query: 926  DLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPR 985
                 KE+ +V +   Q L  +R +L  +     D           L +  +    +D  
Sbjct: 1585 -----KEIMEVCE---QMLSKERAKLNRKDLLGND-----------LAYMDRSDHGIDQF 1625

Query: 986  RPSDMHPMEVVEAVDKLQERLKVVPGE-DPLSVEAQKNATLFFNILLRSTFASKRVLKEH 1044
              +      + E V K  ++L    G+ DP    ++K                     +H
Sbjct: 1626 ESARDFLDSIQEYVQKRADKLISRGGDFDPSDQRSRKGL-------------------DH 1666

Query: 1045 --RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKN 1102
              +LT       I     ++ ++ V PG  +G V AQSIGEP TQMTL TFH+AGV+  +
Sbjct: 1667 TGKLTDTTLRAFITACLLKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMS 1726

Query: 1103 VTLGVPRLREIINVAKKIKTPSLSVFLKPGVNS-TKERAKNVQCALEYTTLRSVTEA-TE 1160
            +T GVPR++EIIN +K+I TP ++  L   VN  +   A+ V+  +E T L  V  + TE
Sbjct: 1727 ITQGVPRIKEIINASKEISTPVVACEL---VNKESTIAARIVKGRIEKTFLSDVIRSITE 1783

Query: 1161 VWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLR-IELNREMM-VDKKLSMAA 1218
            VW  PD      E  ++ V ++  +  ED+A E  +P ++  I+ N+     D K S   
Sbjct: 1784 VW-SPD------EAYLKVVLNWKTI--EDLALEITTPQIVEAIKTNKRFKGSDLKFSCKQ 1834

Query: 1219 VAEKINQEFDDDLTCIFNDDNADKL----ILRIRIMNDEAPKGELNDESAEDDVFLKKIE 1274
             + K++ + D       +            LR++ +    P  ++          ++  E
Sbjct: 1835 ASIKVHMDLDPASKAGLSKTEIAATSVDPFLRLKHLKRILPNIQILGHPRATRAIIRTDE 1894

Query: 1275 SNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1334
            ++    + + G  L   M    VD  RT +N+++E  EVLG+EA R  ++ E+  V+   
Sbjct: 1895 TSTTNTLLVEGYGLRECMTTMGVDGLRTRTNNIMEAREVLGVEAARSTIVVEISEVMK-- 1952

Query: 1335 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1394
               ++ RH+ +L D MTY+G ++ ITR G+ +     +   SFE+T D L DA     +D
Sbjct: 1953 DMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGLGRTD 2012

Query: 1395 YLRGVTENIMLGQLAPIGTG 1414
             + GV+E I++G+   +GTG
Sbjct: 2013 LIEGVSECIIMGKTVSLGTG 2032


>gi|31127010|gb|AAF26623.2|AF138973_1 RNA polymerase II largest subunit [Ctenolepisma lineata]
          Length = 624

 Score =  768 bits (1983), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/628 (60%), Positives = 477/628 (75%), Gaps = 8/628 (1%)

Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
           SARTVITPDP + IDQ+GVP S+A NLT+PE VTP+NI+++ +LV  G    PG   AKY
Sbjct: 1   SARTVITPDPNLRIDQVGVPRSVAQNLTFPEIVTPFNIDKMLDLVRRGNSQYPG---AKY 57

Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
           I+RD+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P
Sbjct: 58  IVRDNGERIDLRFHPKPSDLHLQCGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLP 117

Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
           +STFR+NLSVTSPYNADFDGDEMN+HVPQS ETRAEV  + + P+ I++PQSN+PVMGIV
Sbjct: 118 WSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQSNKPVMGIV 177

Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
           QDTL   RK+TKRD F+EK+  MNILM    +DGK+P P+ILKP+PLWTGKQVF+LIIP 
Sbjct: 178 QDTLTAVRKMTKRDVFLEKEQMMNILMHLPIWDGKMPYPSILKPKPLWTGKQVFSLIIPG 237

Query: 588 QINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            +N+ RT + H D+ D G    ++ GDT V +E GEL+ G LCKKTLG+S GSL+H+   
Sbjct: 238 NVNVTRTHSTHPDDEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGSSAGSLLHICML 297

Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
           E+G +   +F G+ Q +VN WLL    SIGIGDTIAD +T   I   I KAK +V  +I+
Sbjct: 298 ELGHEVCGRFYGNIQTVVNNWLLLEGHSIGIGDTIADPQTYTEIQRAIKKAKEDVIEVIQ 357

Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
           +A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS 
Sbjct: 358 KAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSN 417

Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
           INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 418 INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF 477

Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
           HAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  YGEDG+  
Sbjct: 478 HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCG 537

Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
             +E Q+L +LK+    F+K F+F+   E +      ++ + +L    ++    + E ++
Sbjct: 538 ETVEFQSLPTLKLSNRVFEKRFKFDPTNERYLRRVFTEDILRELMGSGDVISELEKEWEQ 597

Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKR 971
           L  DR  L  +I  +G++S  LP NL+R
Sbjct: 598 LVEDREALR-KIFPTGETSVVLPCNLQR 624


>gi|68481275|ref|XP_715412.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
 gi|46437034|gb|EAK96387.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
          Length = 1448

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/1480 (34%), Positives = 787/1480 (53%), Gaps = 124/1480 (8%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCTA 71
            ++ ++FG LS  +I   S V+I+  +    E+G+ PK  G  D ++G      +C TC  
Sbjct: 13   IKGLEFGALSAKDIVAQSEVEIQTRDLYDLEKGRVPKEHGALDTKMGISSNAQECSTCHG 72

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK-IRNP 130
            N+A C GHFGH+ LA P+FH+G+ K+++S+++ +C +C+ +L DE   +  Q L  +R P
Sbjct: 73   NLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLDEQSKR--QYLNDLRKP 130

Query: 131  K-------NRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
                      +KKI++ CK + +C   + I+         +KK   G G    K+  +  
Sbjct: 131  HIDNLRRMKIIKKIIEQCKKQRRCLKCNHIN-------GVVKKAASGAGPAALKIVHDTF 183

Query: 184  KMIAEYKAQRKKNDDQE---------QLPEPVER-KQTLTAERVLGVLKRISDEDCQLLG 233
            + I + +   K   D+E         +L +  +R    L   + L + K+I+ +DC+L G
Sbjct: 184  RWIGKKETLEKTIWDEELDQVFIRNPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFG 243

Query: 234  LNP-KYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNG 283
            L+P K  RP+  I + LP PP  +RPS         DDLT +L  I+  +  +R     G
Sbjct: 244  LDPAKGGRPEMYIWRYLPAPPVCIRPSVMMDSQSNEDDLTVKLTEIVWTSSMIRAGIVKG 303

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRAT----QRSGRPIKSICSRLKAKEGRIRGN 339
               + + E    LQ  +A Y +++      +T     +S +PI++ C RLK K+GR RGN
Sbjct: 304  ISINNLMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGN 363

Query: 340  LMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 399
            L GKRVDFS RTVI+PDP + ID++ VP  +A  LTYPE  T YN ++L++LV  GP   
Sbjct: 364  LSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIH 423

Query: 400  PGKTGAKYIIRDD--GQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKM 456
            PG   A Y+++ +  G+R +LR+  +      L++G  VERH+ DGD VLFNRQPSLH++
Sbjct: 424  PG---ANYVMKQNEPGKR-NLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRL 479

Query: 457  SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 516
            SI+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   +++
Sbjct: 480  SILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLT 539

Query: 517  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK--VPQPTILKPRPL 574
            P+S  P++   QD + G   I+ +D+F ++   + +L    D D +  +P PTI KP  L
Sbjct: 540  PKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTIFKPVML 599

Query: 575  WTGKQVFNLII-PKQ-----INL-FRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGT 624
            WTGKQVF+L+I P +     INL  +   +H    KG+   ++  D  V I   ++LSG 
Sbjct: 600  WTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPK-KGLPNEMSPNDGFVVIRGSKILSGL 658

Query: 625  LCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKT 683
            + K TLG     S+ + I  + GP  A   +     L   +L    FSIGI D     + 
Sbjct: 659  MDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGINDVTPADEL 718

Query: 684  METINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQK 743
             +     + +A      LI       LE +PG    ++ E K+  +L+  R+E G    +
Sbjct: 719  KQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCIR 778

Query: 744  SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPE 803
             L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHFTK+   P+
Sbjct: 779  ELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQ 838

Query: 804  SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGT 863
            S+GFV NS+  GLTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD T
Sbjct: 839  SKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQYDNT 898

Query: 864  VRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEY 923
            VRNS   ++QF YG DG+D   +E         K   F++          W+  Y L   
Sbjct: 899  VRNSSNGIVQFTYGGDGLDPYDMEGDA------KPVNFNR---------QWDHAYNLTYN 943

Query: 924  IDDLKTI-KELRDVFDAEVQKLEAD--RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTF 980
            +DD   +  ++ ++ D+ +  LE    RY                  NL   + + +K  
Sbjct: 944  VDDASLLPYQIEELVDSVLAPLENKLIRYD-----------------NLGNALNDKEKEQ 986

Query: 981  KVDPRRPSDMHP---MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL-RSTFA 1036
            K++    +D        + + + K   RL ++  E  L  +A   A     I++      
Sbjct: 987  KIEYIDQNDGERDFYKSIRDFLTKKSIRLALLREERGL--KAYFTAPTEDEIVMDEDAVK 1044

Query: 1037 SKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1096
             K + +  +++ +A +  + +   ++ ++ V PG  +G + AQSIGEP TQMTL TFH+A
Sbjct: 1045 VKAIDQLSKISSKAVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFA 1104

Query: 1097 GVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNV-QCALEYTTLRSV 1155
            GV++ NVTLGVPR++EIIN +K I TP ++  L   VN   E A  V +  +E T L  V
Sbjct: 1105 GVASMNVTLGVPRIKEIINASKVISTPIINAVL---VNDDDEIAARVAKGRIEKTLLEDV 1161

Query: 1156 TEATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKL 1214
                E  Y  +     I+ D+E + K   E+  E+IA    +   L+I  +   +  K  
Sbjct: 1162 AFYIEDVYKDNLAYLSIKIDLETIDKLQLELNLENIAVAIANAPKLKIAQSDVSVTGK-- 1219

Query: 1215 SMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAP----KGELNDESAEDDVFL 1270
                V   I +   + L    +  NA  L  R++ +    P    KG  N   A     +
Sbjct: 1220 DRINVLVNIKETKTESLRNTVDPKNA--LFFRMQYLKRALPGVCIKGLPNIFRA-----V 1272

Query: 1271 KKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
              I+ +   E+ + G  L  VM  E +   +TT+NH++E+ ++LGIEA R +++ E+   
Sbjct: 1273 INIKDDGKKELLVEGYGLKDVMNTEGIVGTKTTTNHVLEVNQILGIEAARGSIIKEIDYT 1332

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            +S  G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T D L DAA F
Sbjct: 1333 MSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFF 1392

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIE 1430
             ++D + GV+E I+LGQ   IGTG   L  +    K A++
Sbjct: 1393 MKNDKIEGVSECIILGQTMSIGTGSFKLVKSSNCEKKALK 1432


>gi|68481134|ref|XP_715482.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
 gi|46437106|gb|EAK96458.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
          Length = 1448

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/1480 (34%), Positives = 787/1480 (53%), Gaps = 124/1480 (8%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCTA 71
            ++ ++FG LS  +I   S V+I+  +    E+G+ PK  G  D ++G      +C TC  
Sbjct: 13   IKGLEFGALSAKDIVAQSEVEIQTRDLYDLEKGRVPKEHGALDTKMGISSNAQECSTCHG 72

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK-IRNP 130
            N+A C GHFGH+ LA P+FH+G+ K+++S+++ +C +C+ +L DE   +  Q L  +R P
Sbjct: 73   NLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKSCAAVLLDEQSKR--QYLNDLRKP 130

Query: 131  K-------NRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
                      +KKI++ CK + +C   + I+         +KK   G G    K+  +  
Sbjct: 131  HIDNLRRMKIIKKIIEQCKKQRRCLKCNHIN-------GVVKKAASGAGPAALKIVHDTF 183

Query: 184  KMIAEYKAQRKKNDDQE---------QLPEPVER-KQTLTAERVLGVLKRISDEDCQLLG 233
            + I + +   K   D+E         +L +  +R    L   + L + K+I+ +DC+L G
Sbjct: 184  RWIGKKETLEKTIWDEELDQVFIRNPELEKFAKRIHDDLNPLKTLNLFKQITPQDCELFG 243

Query: 234  LNP-KYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNG 283
            L+P K  RP+  I + LP PP  +RPS         DDLT +L  I+  +  +R     G
Sbjct: 244  LDPAKGGRPEMYIWRYLPAPPVCIRPSVMMDSQSNEDDLTVKLTEIVWTSSMIRAGIVKG 303

Query: 284  APAHIISEFAQLLQFHIATYFDNELPGQPRAT----QRSGRPIKSICSRLKAKEGRIRGN 339
               + + E    LQ  +A Y +++      +T     +S +PI++ C RLK K+GR RGN
Sbjct: 304  ISINNLMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGN 363

Query: 340  LMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 399
            L GKRVDFS RTVI+PDP + ID++ VP  +A  LTYPE  T YN ++L++LV  GP   
Sbjct: 364  LSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIH 423

Query: 400  PGKTGAKYIIRDD--GQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKM 456
            PG   A Y+++ +  G+R +LR+  +      L++G  VERH+ DGD VLFNRQPSLH++
Sbjct: 424  PG---ANYVMKQNEPGKR-NLRFGDRVKLAKTLQIGDVVERHIEDGDVVLFNRQPSLHRL 479

Query: 457  SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 516
            SI+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   +++
Sbjct: 480  SILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLT 539

Query: 517  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK--VPQPTILKPRPL 574
            P+S  P++   QD + G   I+ +D+F ++   + +L    D D +  +P PTI KP  L
Sbjct: 540  PKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMMSDADIQFDIPPPTIFKPVML 599

Query: 575  WTGKQVFNLII-PKQ-----INL-FRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGT 624
            WTGKQVF+L+I P +     INL  +   +H    KG+   ++  D  V I   ++LSG 
Sbjct: 600  WTGKQVFSLLIKPNKKSNVVINLDAKNKTFHPPK-KGLPNEMSPNDGFVVIRGSKILSGL 658

Query: 625  LCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKT 683
            + K TLG     S+ + I  + GP  A   +     L   +L    FSIGI D     + 
Sbjct: 659  MDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGINDVTPADEL 718

Query: 684  METINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQK 743
             +     + +A      LI       LE +PG    ++ E K+  +L+  R+E G    +
Sbjct: 719  KQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCIR 778

Query: 744  SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPE 803
             L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHFTK+   P+
Sbjct: 779  ELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTPQ 838

Query: 804  SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGT 863
            S+GFV NS+  GLTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD T
Sbjct: 839  SKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQYDNT 898

Query: 864  VRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEY 923
            VRNS   ++QF YG DG+D   +E         K   F++          W+  Y L   
Sbjct: 899  VRNSSNGIVQFTYGGDGLDPYDMEGDA------KPVNFNR---------QWDHAYNLTYN 943

Query: 924  IDDLKTI-KELRDVFDAEVQKLEAD--RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTF 980
            +DD   +  ++ ++ D+ +  LE    RY                  NL   + + +K  
Sbjct: 944  VDDASLLPYQIEELVDSVLAPLENKLIRYD-----------------NLGNALNDKEKEQ 986

Query: 981  KVDPRRPSDMHP---MEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL-RSTFA 1036
            K++    +D        + + + K   RL ++  E  L  +A   A     I++      
Sbjct: 987  KIEYIDQNDGERDFYKSIRDFLTKKSIRLALLREERGL--KAYFTAPTEDEIVMDEDAVK 1044

Query: 1037 SKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1096
             K + +  +++ +A +  + +   ++ ++ V PG  +G + AQSIGEP TQMTL TFH+A
Sbjct: 1045 VKAIDQLSKISSKAVKTFLEQCLYKYSRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFA 1104

Query: 1097 GVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNV-QCALEYTTLRSV 1155
            GV++ NVTLGVPR++EIIN +K I TP ++  L   VN   E A  V +  +E T L  V
Sbjct: 1105 GVASMNVTLGVPRIKEIINASKVISTPIINAVL---VNDDDEIAARVAKGRIEKTLLEDV 1161

Query: 1156 TEATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKL 1214
                E  Y  +     I+ D+E + K   E+  E+IA    +   L+I  +   +  K  
Sbjct: 1162 AFYIEDVYKDNLAYLSIKIDLETIDKLQLELNLENIAVAIANAPKLKIAQSDVSVTGK-- 1219

Query: 1215 SMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAP----KGELNDESAEDDVFL 1270
                V   I +   + L    +  NA  L  R++ +    P    KG  N   A     +
Sbjct: 1220 DRINVLVNIKETKTESLRNTVDPKNA--LFFRMQYLKRALPGVCIKGLPNIFRA-----V 1272

Query: 1271 KKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
              I+ +   E+ + G  L  VM  E +   +TT+NH++E+ ++LGIEA R +++ E+   
Sbjct: 1273 INIKDDGKKELLVEGYGLKDVMNTEGIVGTKTTTNHVLEVNQILGIEAARGSIIKEIDYT 1332

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            +S  G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T D L DAA F
Sbjct: 1333 MSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFF 1392

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIE 1430
             ++D + GV+E I+LGQ   IGTG   L  +    K A++
Sbjct: 1393 MKNDKIEGVSECIILGQTMSIGTGSFKLVKSSNCEKKALK 1432


>gi|354544265|emb|CCE40988.1| hypothetical protein CPAR2_110260 [Candida parapsilosis]
          Length = 1446

 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/1463 (35%), Positives = 774/1463 (52%), Gaps = 131/1463 (8%)

Query: 18   VQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCTANMA 74
            ++F  LS  +I   S V+I   +    E+G+ PK GG  D ++G      +C TC  N+A
Sbjct: 17   LEFSALSAKDIIAQSEVEILTRDLYDLEKGRAPKEGGALDTKMGISSNSSECATCHGNLA 76

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILAD-EDDHKFKQALKIRNPKNR 133
             C GHFGH+ LA P+FH+G+ K V+S+++ VC NC  IL D +   +F   L+  N  N 
Sbjct: 77   SCNGHFGHIRLALPVFHVGYFKAVISVLQCVCKNCGAILLDPQAKRQFLSELRRPNIDNL 136

Query: 134  -----LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAE 188
                 LK+I D CK + +C   + ++         +KK   G G    K+  +  + I +
Sbjct: 137  KRMKILKRINDQCKKQRRCLKCNHVN-------GVVKKAASGAGPASLKIVHDTFRWIGK 189

Query: 189  YKAQRK------------KNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
                 K            +N D E+  + ++  +     + L + K+I  EDC+LLG++ 
Sbjct: 190  KDTPEKTLWDEDLDLVFQRNPDLEKFAKRIQ--EDFNPLKTLNLFKQIIPEDCELLGMDS 247

Query: 237  -KYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPA 286
             K  RP+  I + LP PP  +RPS         DDLT +L  I+  +  ++     G   
Sbjct: 248  SKGGRPETYIWRYLPAPPVCIRPSVMMDAQSNEDDLTVKLTEIVWTSSMIKAGITKGISI 307

Query: 287  HIISEFAQLLQFHIATYFDNELPG---------QPRATQRSGRPIKSICSRLKAKEGRIR 337
            + + E    LQ  +A Y +++               +  +S +PI+  C RLK K+GR R
Sbjct: 308  NNLMEQWDYLQLSVAMYINSDAANPALMSGGGGGGGSGSKSAKPIRGFCQRLKGKQGRFR 367

Query: 338  GNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPH 397
            GNL GKRVDFS RTVI+PDP + ID++ VP  +A  LTYPE  T YN ++L+ L+  GP 
Sbjct: 368  GNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQGLIINGPD 427

Query: 398  PPPGKTGAKYIIRDD--GQRLDLRY-----LKKSSDHHLELGYKVERHLNDGDFVLFNRQ 450
              PG   A Y+++ +  G+R +LR+     L KS    L++G  VERH+ DGD VLFNRQ
Sbjct: 428  VHPG---ANYVMKQNEAGKR-NLRFGDRIKLAKS----LQVGDVVERHIEDGDVVLFNRQ 479

Query: 451  PSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 510
            PSLH++SI+ H  K+ P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V
Sbjct: 480  PSLHRLSILAHYAKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGV 539

Query: 511  PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK--VPQPTI 568
               +++P+S  P++   QD + G   I+ +D+F ++   + +L    D D +  +P PTI
Sbjct: 540  KNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRASLVQLLSMMSDADIQFDIPPPTI 599

Query: 569  LKPRPLWTGKQVFNLIIPKQINLFRTAAWHADND------KGI---LTAGDTLVRIEKGE 619
            +KP  LWTGKQVF+L+I    +       +A N       KG+   ++  D  V I   +
Sbjct: 600  VKPIMLWTGKQVFSLLIKPNRHSKVVINLNAKNKTFHPPAKGLPSEMSPNDGFVIIRGSQ 659

Query: 620  LLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            +LSG + K TLG     S+ + I  + GP  A   +     L   +L    FSIGI D  
Sbjct: 660  ILSGLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGINDVT 719

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
               +  +     + +A      LI       LE +PG    ++ E K+  +L+  R+E G
Sbjct: 720  PAHELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVG 779

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
                + L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHFTK+
Sbjct: 780  DVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKN 839

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
               P+S+GFV NS+  GL+P EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  
Sbjct: 840  SKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSS 899

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNY 918
            +YD TVRNS   ++QF YG DG+D   +E        +++ +      + ++++   P Y
Sbjct: 900  QYDNTVRNSSNGIVQFTYGGDGLDPYDMEGDAKPVNFIRQWDHAYNITYNVNDKPLLP-Y 958

Query: 919  MLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIW-NAQ 977
             + E  D  KT+K L D     V   E+   Q   E+    D+      +++  +   A+
Sbjct: 959  EIVELAD--KTLKPLVD--KVAVVGTES---QSEDELVDQKDAEKAFYESVREFLREKAE 1011

Query: 978  KTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFAS 1037
            K  ++   R    +        +K+ E  +++  ED + + A        N L+R +   
Sbjct: 1012 KLARLRESRGLKAY-------YNKIHED-EILVDEDEVKLNA-------VNQLMRIS--- 1053

Query: 1038 KRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 1097
                  HR  +E  +  +     ++ ++ V PG  +G + AQSIGEP TQMTL TFH+AG
Sbjct: 1054 ------HRAAKEFMKQCL----YKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAG 1103

Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNV-QCALEYTTLRSVT 1156
            V++ NVTLGVPR++EIIN +K I TP ++  L   VN   E A  V +  +E T L+ V 
Sbjct: 1104 VASMNVTLGVPRIKEIINASKTISTPIINAVL---VNDDDEIAARVAKGRIEKTLLKDVA 1160

Query: 1157 EATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1215
               E  Y  +     I+ D+E + K   E+  E+IA        LRI  +  ++  K  +
Sbjct: 1161 FYIEDVYKDNMAYLAIKIDLETIDKLQLELTIENIAQAIFKAPKLRIAPSDVVITAK--N 1218

Query: 1216 MAAVAEKINQEFDDDLTCIFNDDNADKLILRI----RIMNDEAPKGELNDESAEDDVFLK 1271
               V   +N+   + L  + +  NA  L  R+    R++ D   KG  N   A     + 
Sbjct: 1219 RINVLCNVNESKSESLKSVGDSSNA--LFFRMQTLKRVLPDICIKGLPNIFRA-----VI 1271

Query: 1272 KIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
             I+ +   E+ + G  L  VM  E +   +TT+NH++E+ E+LGIEA R +++ E+   +
Sbjct: 1272 NIKDDGKKELLVEGYGLKDVMNTEGIVGTKTTTNHVLEVNEILGIEAARGSIIREIEYTM 1331

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
            S  G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T D L DAA F 
Sbjct: 1332 SNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFM 1391

Query: 1392 ESDYLRGVTENIMLGQLAPIGTG 1414
            + D + GV+E I+LGQ   +GTG
Sbjct: 1392 KKDKIEGVSECIILGQTMRVGTG 1414


>gi|263754|gb|AAB24966.1| RNA polymerase II largest subunit [Dictyostelium discoideum]
          Length = 902

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/729 (54%), Positives = 511/729 (70%), Gaps = 69/729 (9%)

Query: 825  AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
            AMGGREGLIDTAVKTSETGYIQR LVKAMED+ +KYD TVRNSLGDVIQF YGEDG+D  
Sbjct: 1    AMGGREGLIDTAVKTSETGYIQRCLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGC 60

Query: 885  WIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKL 944
            ++E+Q++DSL+   +E ++ +R ++D+ ++   +M    I+ ++     RD  + E +++
Sbjct: 61   FVENQSIDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRNDSLTRDTLEKEFERI 120

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQE 1004
            ++DR  L  EI  SG+++WPLPVNL+RLI NAQK F +D RR SD++P  VV  ++KL  
Sbjct: 121  KSDRSLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVA 180

Query: 1005 RLKVVPGEDPLS---------VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVI 1055
            RLK++   D             E   NAT+ F+IL+RSTFASKRVL E RLT +AF WV 
Sbjct: 181  RLKIIATADTTEDDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVC 240

Query: 1056 GEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIIN 1115
            GEIES+FLQ+L  PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL +IIN
Sbjct: 241  GEIESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLNQIIN 300

Query: 1116 VAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEED 1175
            +AK++KTPSL+++LKP +    +RAK V+  LEYTTL +VT ATE++YDPDP  TII ED
Sbjct: 301  IAKQVKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISED 360

Query: 1176 VEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIF 1235
             EFV SY+E+PDE+I    +SPWLLRIEL+R M+ DKKL+MA + + + ++F   L CIF
Sbjct: 361  AEFVNSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIF 420

Query: 1236 NDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR----------- 1284
            +DDNA+KLILRIR++  +  KG  ND   +DD FL++IESNML+EM LR           
Sbjct: 421  SDDNAEKLILRIRMVESQETKGTDND---DDDQFLRRIESNMLSEMVLRGIKGIKKVFMR 477

Query: 1285 -------------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
                                     GV+LL VM H DVD  RTTSN ++EII+VLGIEAV
Sbjct: 478  TDEKIPKVTENSGFGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAV 537

Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
            R ALL ELR VISFDGSYVNYRHLAIL D MTYRGHLMAITRHGINR +TGP+MRCSFEE
Sbjct: 538  RNALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEE 597

Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLP----- 1434
            TV+IL+DAA+F+E+D ++GVTENI+LGQL P+GTG   ++LN +M+KNA  + LP     
Sbjct: 598  TVEILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNV 657

Query: 1435 SYMEGLEFGMTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSP 1492
            SY +      TP+ S   G  TP+H+   +P   F+   R        FSP       S 
Sbjct: 658  SYPDT-PGSQTPSYSYGDGSTTPFHNPYDAPLSPFNETFR------GDFSP-------SA 703

Query: 1493 TSSPGYSPS 1501
             +SPGY+ +
Sbjct: 704  MNSPGYNAN 712


>gi|448520288|ref|XP_003868270.1| Rpo31 protein [Candida orthopsilosis Co 90-125]
 gi|380352609|emb|CCG22836.1| Rpo31 protein [Candida orthopsilosis]
          Length = 1443

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/1460 (35%), Positives = 769/1460 (52%), Gaps = 128/1460 (8%)

Query: 18   VQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCTANMA 74
            + F  LS  +I   S V+I+  +    E+G+ PK GG  D R+G      +C TC  N+A
Sbjct: 17   LDFSALSAKDIVAQSEVEIQTRDLYDLEKGRVPKEGGALDTRMGISSNSSECATCHGNLA 76

Query: 75   ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILAD-EDDHKFKQALKIRNPKNR 133
             C GHFGH+ LA P+FH+G+ K V+S+++ VC NC  IL + +   +F   L+  N  N 
Sbjct: 77   SCNGHFGHIRLALPVFHVGYFKAVISVLQCVCKNCGAILLEPQAKRQFLSELRRPNIDNL 136

Query: 134  -----LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIA- 187
                 LKKI D CK + +C   + ++         +KK   G G    K+  +  + I  
Sbjct: 137  KRMKILKKINDQCKKQRRCLKCNHVN-------GVVKKAASGAGPASLKIVHDTFRWIGK 189

Query: 188  -----------EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
                       +     K+N D E+  + ++  +     + L + K+I  EDC+LLG++ 
Sbjct: 190  KDTPEKTVWDEDLDLVFKRNPDLEKFAKRIQ--EDFNPLKTLNLFKQIIPEDCELLGMDA 247

Query: 237  -KYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPA 286
             K  RP+  I + LP PP  +RPS         DDLT +L  I+  +  ++     G   
Sbjct: 248  SKGGRPEMYIWRYLPAPPVCIRPSVMMDAQSNEDDLTVKLTEIVWTSSMIKAGIAKGISI 307

Query: 287  HIISEFAQLLQFHIATYFDNE------LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 340
            + + E    LQ  +A Y +++      + G      +S +PI+  C RLK K+GR RGNL
Sbjct: 308  NNLMEQWDYLQLSVAMYINSDAANPALMSGGGGGGSKSAKPIRGFCQRLKGKQGRFRGNL 367

Query: 341  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 400
             GKRVDFS RTVI+PDP + ID++ VP  +A  LTYPE  T YN ++L+ L+  GP   P
Sbjct: 368  SGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQCLIINGPDVHP 427

Query: 401  GKTGAKYIIRDD--GQRLDLRY-----LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSL 453
            G   A Y+++ +  G+R +LR+     L KS    L++G  VERH+ DGD VLFNRQPSL
Sbjct: 428  G---ANYVMKQNEAGKR-NLRFGDRVKLAKS----LQIGDVVERHIEDGDVVLFNRQPSL 479

Query: 454  HKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKC 513
            H++SI+ H  K+ P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   
Sbjct: 480  HRLSILAHYAKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNN 539

Query: 514  IVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK--VPQPTILKP 571
            +++P+S  P++   QD + G   I+ +D+F ++   + +L    D D +  +P P I+KP
Sbjct: 540  LLTPKSGEPIIAATQDFITGSYLISHKDSFFDRASLVQLLSMMSDADIQFDIPPPAIMKP 599

Query: 572  RPLWTGKQVFNLIIPKQINLFRTAAWHADND------KGI---LTAGDTLVRIEKGELLS 622
              LWTGKQVF+L+I            +A N       KG+   ++  D  V I   ++LS
Sbjct: 600  VMLWTGKQVFSLLIKPNRQSKVVINLNAKNKTFHPPAKGLPSEMSPNDGFVLIRGSQILS 659

Query: 623  GTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 681
            G + K TLG     S+ + I  + GP  A   +     L   +L    FSIGI D     
Sbjct: 660  GLMDKSTLGDGKKHSVFYTILRDYGPQEAAAAMNRMAKLCARFLGNRGFSIGINDVTPAH 719

Query: 682  KTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSA 741
            +  +     + +A      LI       LE +PG    ++ E K+  +L+  R+E G   
Sbjct: 720  ELKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVC 779

Query: 742  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYG 801
             + L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHFTK+   
Sbjct: 780  IRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKT 839

Query: 802  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 861
            P+S+GFV NS+  GL+P EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD
Sbjct: 840  PQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQYD 899

Query: 862  GTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQ 921
             TVRNS   ++QF YG DG+D   +E        +++ +      + ++++   P Y + 
Sbjct: 900  NTVRNSSNGIVQFTYGGDGLDPYDMEGDAKPVNFVRQWDHAYNVTYNVNDKPLLP-YEIN 958

Query: 922  EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTF- 980
            E  D  KT+K L D        + +D  Q   E+    D+      +++  + +  +T  
Sbjct: 959  ELAD--KTLKPLVDKL-----AVVSDEVQNKDELVDQKDAERAFYESVREFLRDKAETLA 1011

Query: 981  KVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRV 1040
            ++   R        V E   +L E             EA+ NA    N LL+ +      
Sbjct: 1012 RLRESRGLQAFYTRVNEDDIQLDED------------EAKINAV---NQLLKIS------ 1050

Query: 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
               HR  +E  +  +     ++ ++ V PG  +G + AQSIGEP TQMTL TFH+AGV++
Sbjct: 1051 ---HRAAKEFMKQCL----YKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAS 1103

Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNV-QCALEYTTLRSVTEAT 1159
             NVTLGVPR++EIIN +K I TP ++  L   VN   E A  V +  +E T L+ V    
Sbjct: 1104 MNVTLGVPRIKEIINASKTISTPIINAVL---VNDDDEIAARVAKGRIEKTLLKDVAFYI 1160

Query: 1160 EVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAA 1218
            E  Y  +     I+ D+E + K   E+  ++IA        L+I  +  ++  K  +   
Sbjct: 1161 EDVYKDNMAYLAIKVDLETIDKLQLELTIDNIAQAICKAPKLKIAPSDVIITGK--NRIN 1218

Query: 1219 VAEKINQEFDDDLTCIFNDDNADKLILRI----RIMNDEAPKGELNDESAEDDVFLKKIE 1274
            V   +N+   + L      D+ + L  R+    R++ D   KG  N   A     +  I+
Sbjct: 1219 VLCNVNESKSESLKSA--SDSLNALFFRMQTLKRVLPDICIKGLPNIFRA-----VINIK 1271

Query: 1275 SNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1334
             +   E+ + G  L  VM  E +   +TT+NH++E+ E+LGIEA R +++ E+   +S  
Sbjct: 1272 DDGKKELLVEGYGLKDVMNTEGIVGTKTTTNHVLEVNEILGIEAARGSIIREIDYTMSNH 1331

Query: 1335 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1394
            G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T D L DAA F + D
Sbjct: 1332 GMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKKD 1391

Query: 1395 YLRGVTENIMLGQLAPIGTG 1414
             + GV+E I+LG+   +GTG
Sbjct: 1392 KIEGVSECIILGKTMSVGTG 1411


>gi|392869043|gb|EAS30407.2| DNA-directed RNA polymerase III largest subunit [Coccidioides immitis
            RS]
          Length = 1444

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1452 (34%), Positives = 768/1452 (52%), Gaps = 125/1452 (8%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGET----TERGKPKPGGLSDPRLGTIDRKMKCETCT 70
            ++ ++FG+L+  +I   ++V++   +      +R   + G L D R+G   +   CETC 
Sbjct: 24   IKEIKFGVLASQDIVSQALVEVSDRKLFDLDNDRAVARHGPL-DGRMGISSKSGTCETCG 82

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIRN 129
              + EC GHFGH+ L  P FH+G+ K V+ I++ +C +CS+IL  E++ + F + ++ + 
Sbjct: 83   GALQECNGHFGHVRLVLPAFHVGYFKRVIGILQEICKDCSRILLPENERRIFLKEMRRQG 142

Query: 130  PKN--RL---KKILDACKNKTKCEGGDEID-VPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
              N  R+   K+I D C+    C     ++ V  + G   LK       A     + + +
Sbjct: 143  IDNLRRMQINKRINDRCRKTRTCYVCHAVNGVVKKAGTSALKITHDKFRAFNASTSAKKV 202

Query: 184  ----KMIAE--YKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
                K++ +  ++  ++ N D E+  + V+    L   RVL + +RISDEDC+LLGLNP+
Sbjct: 203  PPPSKLVFDRSFEEAKRSNTDIEKHFKKVQ--DDLNPLRVLKLFRRISDEDCELLGLNPE 260

Query: 238  YARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
              RP+  + Q +P PP  +RPS         DDLT +L  I++ N NL+     GAP   
Sbjct: 261  EVRPEMFLWQYIPAPPVSIRPSVGQEGASTEDDLTAKLGDIVQSNINLKNAINKGAPVQT 320

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            I E    +Q  IA Y ++++PG  +A    G+PI+ IC RLK K+GR RGNL GKRVDFS
Sbjct: 321  IIECWDYMQLQIAVYINSDVPGLQKAD--FGKPIRGICQRLKGKQGRFRGNLSGKRVDFS 378

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
             RTVI+PDP + ID++ VP  +A+N+TYPE VT YN E+L+E V  G    PG   A Y+
Sbjct: 379  GRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPG---ANYL 435

Query: 409  -IRDDGQRLDLRY--LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
              R    ++ L+Y  L   +D  LE G  VERHL DGD VLFNRQPSLHK+SI+ H +K+
Sbjct: 436  SKRGTTFKVFLKYGNLNLMADQ-LEEGDVVERHLEDGDIVLFNRQPSLHKLSILSHFVKV 494

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
             P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE +ELM V   + +P++  P++ 
Sbjct: 495  RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGEPIIA 554

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMN----ILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
             +QD +     ++ +D F ++  F      +L     FD  +P P +LKP+ LWTGKQVF
Sbjct: 555  AIQDFITAAYLLSSKDNFYDRGSFTQTCGYMLQPGTKFD--LPPPAVLKPQMLWTGKQVF 612

Query: 582  NLII------PKQINLFRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGTLCKKTLGT 632
            N+++      P  +NL   A       KG    L   D  + I   E++ G + K T+G+
Sbjct: 613  NVLMRPSKESPVLVNL-DAACREFRAPKGTPRDLDPNDGWLCIRNSEIMCGVMDKSTIGS 671

Query: 633  ST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTI 691
                S+ +V+  + GP  A + +     L   W     FSIGI D       ++     +
Sbjct: 672  GKKDSVFYVMLRDFGPQVAAEAMNRLSRLSARWFTNIGFSIGITDVYPGDSLLQAKKQLV 731

Query: 692  SKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNL 751
             +A      LI+  +   LE  PG    ++ E++++ +L+  R +AG      LS+ N+ 
Sbjct: 732  EEAYAQCDALIQLFKAGKLEKAPGGDEQQNMESQISGILSKVRQQAGEQCIAELSKWNSP 791

Query: 752  KAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENS 811
              M T+GSKGS IN++QM A VGQQ + G+R+  GF DRTLPHF K    P ++GFV NS
Sbjct: 792  LIMATSGSKGSTINVAQMIALVGQQIIAGQRVQDGFQDRTLPHFPKYARQPPAKGFVRNS 851

Query: 812  YLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 871
            +  GL P EFFFHA+ GREGLIDTAVKT+ETGY+ RRL+K++ED+  +YD TVRNS  ++
Sbjct: 852  FFSGLIPSEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSSNI 911

Query: 872  IQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF-RFEMDEENWNPNYMLQEYIDDLKTI 930
            +QF YG+D +D V +E       K K   FD+ F   E    +     +L   + DL   
Sbjct: 912  VQFQYGDDKLDPVDMEG------KAKPVHFDRTFTHAETTTYSKEDRGLLPSEVIDL--- 962

Query: 931  KELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDM 990
               R +   E  KL  DR+ L       G+S          L +  +    +D    +  
Sbjct: 963  --CRQMLAPERAKL--DRFDLL------GNS----------LEYTDRSDHGIDQLESNRD 1002

Query: 991  HPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREA 1050
                + + +    +RL  V G +  ++E Q        + L  T          +L+ + 
Sbjct: 1003 FLQSIEDYIQAKADRLHSVTGTEADTLEGQ--------MALSHTV---------KLSAKT 1045

Query: 1051 FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL 1110
                I    +++ ++ V PG  +G V AQSIGEP TQMTL TFH+AGV+  ++T GVPR+
Sbjct: 1046 LTTFITSCLTKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRI 1105

Query: 1111 REIINVAKKIKTPSLSVFLKPGVNSTKERAKN-VQCALEYTTLRSVTEATEVWYDPDPMG 1169
            +EIIN +K+I TP ++  L   VN    RA   V+  +E T ++ +    E  +      
Sbjct: 1106 KEIINASKEISTPIITCEL---VNKEDVRAAQIVKGRVEKTFIKDIIYYIEEAWTSSVAY 1162

Query: 1170 TIIEEDVEFVKSY-YEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFD 1228
              I+ D   +++   E+   DI        L  I+ ++    D  L   +    I+  F 
Sbjct: 1163 INIKIDFSTIQALQLELTLRDI--------LNAIKKHKRFRSD-DLKFRSFGSHIHI-FV 1212

Query: 1229 DDLTCIFNDDNADKLI------LRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMA 1282
            D  T   +   A++        +R++ +    P  ++          ++  E+N    + 
Sbjct: 1213 DQATTKTSLTKAEQAATGSDPYIRLKHLKRLLPTIQVLGHPQCSRAIIRTDETNTTNTLL 1272

Query: 1283 LRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRH 1342
            + G  L A M  + +   RT +N+++E  +VLGIEA R  ++DE+  V+   G  ++ RH
Sbjct: 1273 VEGYGLRACMTTDGIFGTRTRTNNIMETKDVLGIEAARTTIVDEISDVMKDMG--IDPRH 1330

Query: 1343 LAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTEN 1402
            + +L D MTY+G ++ ITR G+ +     +   SFE+T D L DA     +D + GV+E 
Sbjct: 1331 MQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLVEGVSEC 1390

Query: 1403 IMLGQLAPIGTG 1414
            I+LG+   +GTG
Sbjct: 1391 IILGKSVSLGTG 1402


>gi|31126986|gb|AAK11870.2| RNA polymerase II largest subunit [Abacion magnum]
          Length = 624

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/633 (59%), Positives = 477/633 (75%), Gaps = 18/633 (2%)

Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
           SARTVITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ELV  G    PG   AKY
Sbjct: 1   SARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPG---AKY 57

Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
           I+RD+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGH I++ P
Sbjct: 58  IVRDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDVVIFNRQPTLHKMSMMGHHIRVFP 117

Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
           +STFR+NLSVT+PYNADFDGDEMN+HVPQS ETRAE+ EL +VP+ I++PQSNRPVMGIV
Sbjct: 118 WSTFRMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAIVPRQIITPQSNRPVMGIV 177

Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
           QDTL   RK+TKRD FIEK+  MN+LM+   +DGKVPQP ILKP+PLWTGKQ+F+LIIP 
Sbjct: 178 QDTLTAVRKMTKRDVFIEKEHMMNLLMFLPIWDGKVPQPAILKPKPLWTGKQLFSLIIPG 237

Query: 588 QINLFRTAAWHADNDK----GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            +N  RT + H D++       ++ GDT V +E GEL+ G LCKKTLGTS GSL+H++  
Sbjct: 238 NVNCIRTHSTHPDDEDESPYKWISPGDTKVLVEHGELICGILCKKTLGTSAGSLLHIVML 297

Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
           E+G + A  F  H Q ++N WLL    +IGIGDTIAD +T   I ++I KAK +V  +I+
Sbjct: 298 ELGWEVAGYFYWHIQTVINNWLLLEGHTIGIGDTIADPQTYVDIQNSIKKAKQDVIEVIE 357

Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
           +A +  LEP PG T+ ++FEN+VN++LN ARD+ G SAQKSLSE NN KAMV +G+K S 
Sbjct: 358 KAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKAMVVSGAKXSK 417

Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
           INISQ+ ACVGQQNVEG+RIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 418 INISQVIACVGQQNVEGRRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF 477

Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
           HAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGT+RNS+  +IQ  YGEDG+D 
Sbjct: 478 HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTIRNSVCQLIQLRYGEDGLDG 537

Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEEN-----WNPNYMLQEYIDDLKTIKELRDVFD 938
             +E Q L +LK     F+K F+F++  E      +N + +++E +     + EL    +
Sbjct: 538 GAVEMQNLPTLKPSHKVFEKKFKFDVTNERHLRRVFNED-IVKELVGSAYAVAEL----E 592

Query: 939 AEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
            E + L+ DR  +  +I   GDS   LP N++R
Sbjct: 593 KEWEALKRDR-DILRQIFPKGDSKVVLPGNIQR 624


>gi|13274160|emb|CAC33863.1| RNA polymerase II largest subunit [Pleistophora sp. LS]
          Length = 897

 Score =  766 bits (1979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/1022 (43%), Positives = 601/1022 (58%), Gaps = 137/1022 (13%)

Query: 81   GHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDA 140
            GH+EL KP+FHIG++  +  I+ SVCF CS+I   + + +   +L     KN+ K + D+
Sbjct: 1    GHIELCKPVFHIGYIGRIKKILESVCFYCSRIKNGDSNTR---SLNSAWSKNKSKSLCDS 57

Query: 141  CKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQE 200
                                         GCG++QP    EGM +               
Sbjct: 58   -----------------------------GCGSKQPHFKREGMNIFTTID---------- 78

Query: 201  QLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS- 259
                  E +  L+ E+V  +  RI+D DC+ LG +   A P  +++  + + PP  RPS 
Sbjct: 79   ------ENRVVLSGEKVAEIFARITDGDCKALGFDSVNAHPSSLLISSVLVVPPACRPSI 132

Query: 260  ---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPG 310
                     DDLTH+L+ II+ N+ LR+ E  GAPAH+I E+ QLLQFH+ TY D E+ G
Sbjct: 133  SLEGFLRAEDDLTHKLSDIIKSNKTLRKNEAEGAPAHVIREYEQLLQFHVNTYMDTEIAG 192

Query: 311  QPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSI 370
            QP+A Q+SGRPIKSI SR+K KEGRIRGNLMGKRVDFSAR+VIT +P I++D+LGVP  I
Sbjct: 193  QPQALQKSGRPIKSISSRIKGKEGRIRGNLMGKRVDFSARSVITAEPNIDLDELGVPREI 252

Query: 371  ALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLE 430
            A+  T+PE V  YNI RL ELV+ GP   P   GA Y+IR DG ++DLR+ +      L+
Sbjct: 253  AVIETFPEKVNSYNIIRLSELVKRGPAQYP---GANYVIRGDGMKIDLRFTRSV---ELQ 306

Query: 431  LGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEM 490
            +G+ VERH+ DGD+VLFNRQPSLHKMS+M HR+++M   +FRLNLSVT+PYNADFDGDEM
Sbjct: 307  IGWTVERHMVDGDYVLFNRQPSLHKMSMMCHRVRVMEGKSFRLNLSVTTPYNADFDGDEM 366

Query: 491  NMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFM 550
            N+H+PQS+ T  E+  L  VP  I+SPQSN+P+MGIVQDTL+G   ++    FIE+    
Sbjct: 367  NLHMPQSYITAVELRRLTHVPLHILSPQSNKPIMGIVQDTLVGVYIMSGDSIFIEESTTH 426

Query: 551  NILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGD 610
            N LM+  D D K   P IL+P  ++TGKQ+F++++P       T  +  DN         
Sbjct: 427  N-LMYTVDIDSKCT-PAILRPERIYTGKQLFSMVLPP------TLIYCTDN--------- 469

Query: 611  TLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAF 670
              ++I  G L+ G + KK +G+   SLIH+++ + G   A  F  + Q +V  +L    F
Sbjct: 470  --IKIVDGVLIKGVVSKKVVGSVRNSLIHILYLDYGAKVALSFFNNIQRVVTAFLSSYGF 527

Query: 671  SIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVL 730
            S GIGDTIAD  T   IN+ +  A ++V  L+ + +D+ L   PG ++ E+FE+ V Q+L
Sbjct: 528  SCGIGDTIADFDTSMKINEELKDAVDSVNGLLLEGRDRKLRRRPGLSLRETFESSVMQIL 587

Query: 731  NTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFV-- 788
            N ARD +G+ AQKSLS  NNL+ MV AGSKGSFINISQ+TACVGQQ VEG+RI  G+   
Sbjct: 588  NKARDTSGTVAQKSLSSDNNLRTMVLAGSKGSFINISQVTACVGQQTVEGRRIACGYYYH 647

Query: 789  DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRR 848
             RTLPHF++DD  P +RGFV NSYL GL P EF+FHAMGGREGLIDTA KT+ETGY+QRR
Sbjct: 648  KRTLPHFSRDDLSPRARGFVVNSYLSGLNPDEFYFHAMGGREGLIDTACKTAETGYMQRR 707

Query: 849  LVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFE 908
            L+KAME++ V+YDG V +  G +++F YG DG D  W                D     E
Sbjct: 708  LIKAMENLRVEYDGNVGD--GGIVRFGYG-DGNDG-W----------------DANISGE 747

Query: 909  MDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVN 968
                 +NP   + EYID     K + +    E Q L A           S      +P+N
Sbjct: 748  CRGVQYNP---IGEYIDAYIQCKSIEEEMKCERQTLSA-----------SSTIKCTMPIN 793

Query: 969  LKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFN 1028
            +KR++  A + F   P      + +        ++  LK       L ++   +  L  N
Sbjct: 794  IKRVLSTAMR-FDTVPAN----YRIFFSSKRALIKNMLKY------LDMDIIIHRVLLNN 842

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQM 1088
            ILL  +  S   + E     E  +++   +  +  ++ + P EM+G +AAQSIGEPATQM
Sbjct: 843  ILL--SLKSGDGISE-----EGLKYIQCILLKKIKKARINPMEMVGTLAAQSIGEPATQM 895

Query: 1089 TL 1090
            TL
Sbjct: 896  TL 897


>gi|83320452|gb|ABC02853.1| RNA polymerase II largest subunit, partial [Umbelopsis ramanniana]
          Length = 571

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/553 (65%), Positives = 436/553 (78%), Gaps = 3/553 (0%)

Query: 257 RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQ 316
           +  DDLTH+L+ +++ N N++R E  GAP H++ EF QLLQFH ATY DN++ GQP+A Q
Sbjct: 22  KGEDDLTHKLSDVLKANANVKRCETEGAPVHVVQEFEQLLQFHTATYMDNDIAGQPQALQ 81

Query: 317 RSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTY 376
           +SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP +++D++GVP SIA  LTY
Sbjct: 82  KSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSVDEVGVPRSIARTLTY 141

Query: 377 PETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVE 436
           PE VTPYN+++L+ LV  GP   PG   AKY+IRD G+R+DLRY K++ +  L+ GYKVE
Sbjct: 142 PEIVTPYNMDKLQTLVRNGPTEHPG---AKYVIRDTGERIDLRYHKRAGEIPLQYGYKVE 198

Query: 437 RHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQ 496
           RH+NDGD V+FNRQPSLHKMS+MGHRI++MPYSTFRLNLSVTSPYNADFDGDEMN+HVPQ
Sbjct: 199 RHINDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQ 258

Query: 497 SFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW 556
           S ETRAE+ E+ MVPK IVSPQSN+PVMGIVQDTL G  K T+RD+F+ KD+ MNI+MW 
Sbjct: 259 SLETRAEITEICMVPKQIVSPQSNKPVMGIVQDTLAGVNKFTRRDSFLSKDLVMNIVMWV 318

Query: 557 EDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIE 616
            D+DG +P P ILKP+P+WTGKQ+ ++IIPK IN       H D +   ++  DT V IE
Sbjct: 319 PDWDGYLPTPAILKPKPMWTGKQILSMIIPKGINCQTFHFNHPDGETTWISPRDTRVFIE 378

Query: 617 KGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD 676
            GEL+ G +CKKT+GT++G LIH I  E GP+AA+ FL   Q +VNYWLLQN FSIGIGD
Sbjct: 379 NGELICGIVCKKTVGTASGGLIHTIMNEQGPEAAKNFLNGAQTVVNYWLLQNGFSIGIGD 438

Query: 677 TIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDE 736
           TIAD  TME I   IS AK+ V+ +I  AQ   LE +PG T+ ESFE KVNQ LN ARD+
Sbjct: 439 TIADRDTMENITGLISSAKDRVQEIILAAQQDKLEVQPGMTIRESFEAKVNQALNKARDD 498

Query: 737 AGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFT 796
           AG  AQ SL E NN+K MV AGSKGSFINISQMTACVGQQNVEGKRIP+GF  RTLPHF 
Sbjct: 499 AGKKAQSSLREDNNVKQMVVAGSKGSFINISQMTACVGQQNVEGKRIPYGFKFRTLPHFA 558

Query: 797 KDDYGPESRGFVE 809
           KDD+ PESRGFVE
Sbjct: 559 KDDHSPESRGFVE 571


>gi|303315581|ref|XP_003067798.1| DNA-directed RNA polymerase III largest subunit, putative
            [Coccidioides posadasii C735 delta SOWgp]
 gi|240107468|gb|EER25653.1| DNA-directed RNA polymerase III largest subunit, putative
            [Coccidioides posadasii C735 delta SOWgp]
          Length = 1444

 Score =  765 bits (1975), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1452 (34%), Positives = 767/1452 (52%), Gaps = 125/1452 (8%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGET----TERGKPKPGGLSDPRLGTIDRKMKCETCT 70
            ++ ++FG+L+  +I   ++V++   +      +R   + G L D R+G   +   CETC 
Sbjct: 24   IKEIKFGVLASQDIVSQALVEVSDRKLFDLDNDRAVARHGPL-DGRMGISSKSGTCETCG 82

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIRN 129
              + EC GHFGH+ L  P FH+G+ K V+ I++ +C +CS+IL  E++ + F + ++ + 
Sbjct: 83   GALQECNGHFGHVRLVLPAFHVGYFKRVIGILQEICKDCSRILLPENERRIFLKEMRRQG 142

Query: 130  PKN--RL---KKILDACKNKTKCEGGDEID-VPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
              N  R+   K+I D C+    C     ++ V  + G   LK       A     + + +
Sbjct: 143  IDNLRRMQINKRINDRCRKTRTCYVCHAVNGVVKKAGTSALKITHDKFRAFNASTSAKKV 202

Query: 184  ----KMIAE--YKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
                K++ +  ++  ++ N D E+  + V+    L   RVL + +RISDEDC+LLGLNP+
Sbjct: 203  PPPSKLVFDRSFEEAKRSNTDIEKHFKKVQ--DDLNPLRVLKLFRRISDEDCELLGLNPE 260

Query: 238  YARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
              RP+  + Q +P PP  +RPS         DDLT +L  I++ N NL+     GAP   
Sbjct: 261  EVRPEMFLWQYIPAPPVSIRPSVGQEGASTEDDLTAKLGDIVQSNINLKNAINKGAPVQT 320

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            I E    +Q  IA Y ++++PG  +A    G+PI+ IC RLK K+GR RGNL GKRVDFS
Sbjct: 321  IIECWDYMQLQIAVYINSDVPGLQKAD--FGKPIRGICQRLKGKQGRFRGNLSGKRVDFS 378

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
             RTVI+PDP + ID++ VP  +A+N+TYPE VT YN E+L+E V  G    PG   A Y+
Sbjct: 379  GRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPG---ANYL 435

Query: 409  -IRDDGQRLDLRY--LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
              R    ++ L+Y  L   +D  LE G  VERHL DGD VLFNRQPSLHK+SI+ H +K+
Sbjct: 436  SKRGTTFKVFLKYGNLNLMADQ-LEEGDVVERHLEDGDIVLFNRQPSLHKLSILSHFVKV 494

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
             P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE +ELM V   + +P++  P++ 
Sbjct: 495  RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGEPIIA 554

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWW----EDFDGKVPQPTILKPRPLWTGKQVF 581
             +QD +     ++ +D F ++  F  I  +       FD  +P P +LKP+ LWTGKQVF
Sbjct: 555  AIQDFITAAYLLSSKDNFYDRGSFTQICGYMLQPGTKFD--LPPPAVLKPQMLWTGKQVF 612

Query: 582  NLII------PKQINLFRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGTLCKKTLGT 632
            N+++      P  +NL   A       KG    L   D  + I   E++ G + K T+G+
Sbjct: 613  NVLMRPSKESPVLVNL-DAACREFRAPKGTPRDLDPNDGWLCIRNSEIMCGVMDKSTIGS 671

Query: 633  ST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTI 691
                S+ +V+  + GP  A + +     L   W     FSIGI D       ++     +
Sbjct: 672  GKKDSVFYVMLRDFGPQVAAEAMNRLSRLSARWFTNIGFSIGITDVYPGDSLLQAKKQLV 731

Query: 692  SKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNL 751
             +A      LI+  +   LE  PG    ++ E++++ +L+  R +AG      LS+ N+ 
Sbjct: 732  EEAYAQCDALIQLFKAGKLEKAPGGDEQQNMESQISGILSKVRQQAGEQCIAELSKWNSP 791

Query: 752  KAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENS 811
              M T+GSKGS IN++QM A VGQQ + G+R+  GF DRTLPHF K    P ++GFV NS
Sbjct: 792  LIMATSGSKGSTINVAQMIALVGQQIIAGQRVQDGFQDRTLPHFPKYARQPPAKGFVRNS 851

Query: 812  YLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 871
            +  GL P EFFFHA+ GREGLIDTAVKT+ETGY+ RRL+K++ED+  +YD TVRNS  ++
Sbjct: 852  FFSGLIPSEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSSNI 911

Query: 872  IQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF-RFEMDEENWNPNYMLQEYIDDLKTI 930
            +QF YG+D +D V +E       K K   FD+ F   E    +     +L   + DL   
Sbjct: 912  VQFQYGDDKLDPVDMED------KAKPVHFDRTFTHAETTTYSKEDRGLLPSEVMDL--- 962

Query: 931  KELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDM 990
               R +   E  KL  DR+ L       G+S          L +  +    +D    +  
Sbjct: 963  --CRQMLAPERAKL--DRFDLL------GNS----------LEYTDRSDHGIDQLESNRD 1002

Query: 991  HPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREA 1050
                + + +    +RL    G +  ++E Q        + L  T          +L+ + 
Sbjct: 1003 FLQSIEDYIQAKADRLHSATGTEADTLEGQ--------MALSHTV---------KLSAKT 1045

Query: 1051 FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL 1110
                I    +++ ++ V PG  +G V AQSIGEP TQMTL TFH+AGV+  ++T GVPR+
Sbjct: 1046 LTTFITSCLTKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRI 1105

Query: 1111 REIINVAKKIKTPSLSVFLKPGVNSTKERAKN-VQCALEYTTLRSVTEATEVWYDPDPMG 1169
            +EIIN +K+I TP ++  L   VN    RA   V+  +E T ++ +    E  +      
Sbjct: 1106 KEIINASKEISTPIITCEL---VNKEDVRAAQIVKGRVEKTFIKDIIYYIEEAWTGSVAY 1162

Query: 1170 TIIEEDVEFVKSY-YEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFD 1228
              I+ D   +++   E+   DI        L  I+ ++    D  L   +    I+  F 
Sbjct: 1163 INIKIDFSTIQALQLELTLRDI--------LNAIKKHKRFRSD-DLKFRSFGSHIHI-FV 1212

Query: 1229 DDLTCIFNDDNADKLI------LRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMA 1282
            D  T   +   A++        +R++ +    P  ++          ++  E+N    + 
Sbjct: 1213 DQATTKTSLTKAEQAATGSDPYIRLKHLKRLLPTIQVLGHPQCSRAIIRTDETNTTNTLL 1272

Query: 1283 LRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRH 1342
            + G  L A M  + +   RT +N+++E  +VLGIEA R  ++DE+  V+   G  ++ RH
Sbjct: 1273 VEGYGLRACMTTDGIFGTRTRTNNIMETKDVLGIEAARTTIVDEISDVMKDMG--IDPRH 1330

Query: 1343 LAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTEN 1402
            + +L D MTY+G ++ ITR G+ +     +   SFE+T D L DA     +D + GV+E 
Sbjct: 1331 MQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLVEGVSEC 1390

Query: 1403 IMLGQLAPIGTG 1414
            I+LG+   +GTG
Sbjct: 1391 IILGKSVSLGTG 1402


>gi|320035344|gb|EFW17285.1| DNA-directed RNA polymerase III largest subunit [Coccidioides
            posadasii str. Silveira]
          Length = 1444

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1452 (34%), Positives = 767/1452 (52%), Gaps = 125/1452 (8%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGET----TERGKPKPGGLSDPRLGTIDRKMKCETCT 70
            ++ ++FG+L+  +I   ++V++   +      +R   + G L D R+G   +   CETC 
Sbjct: 24   IKEIKFGVLASQDIVSQALVEVSDRKLFDLDNDRAVARHGPL-DGRMGISSKSGTCETCG 82

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIRN 129
              + EC GHFGH+ L  P FH+G+ K V+ I++ +C +CS+IL  E++ + F + ++ + 
Sbjct: 83   GALQECNGHFGHVRLVLPAFHVGYFKRVIGILQEICKDCSRILLPENERRIFLKEMRRQG 142

Query: 130  PKN--RL---KKILDACKNKTKCEGGDEID-VPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
              N  R+   K+I D C+    C     ++ V  + G   LK       A     + + +
Sbjct: 143  IDNLRRMQINKRINDRCRKTRTCYVCHAVNGVVKKAGTSALKITHDKFRAFNASTSAKKV 202

Query: 184  ----KMIAE--YKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
                K++ +  ++  ++ N D E+  + V+    L   RVL + +RISDEDC+LLGLNP+
Sbjct: 203  PPPSKLVFDRSFEEAKRSNTDIEKHFKKVQ--DDLNPLRVLKLFRRISDEDCELLGLNPE 260

Query: 238  YARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
              RP+  + Q +P PP  +RPS         DDLT +L  I++ N NL+     GAP   
Sbjct: 261  EVRPEMFLWQYIPAPPVSIRPSVGQEGASTEDDLTAKLGDIVQSNINLKNAINKGAPVQT 320

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            I E    +Q  IA Y ++++PG  +A    G+PI+ IC RLK K+GR RGNL GKRVDFS
Sbjct: 321  IIECWDYMQLQIAVYINSDVPGLQKAD--FGKPIRGICQRLKGKQGRFRGNLSGKRVDFS 378

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
             RTVI+PDP + ID++ VP  +A+N+TYPE VT YN E+L+E V  G    PG   A Y+
Sbjct: 379  GRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPG---ANYL 435

Query: 409  -IRDDGQRLDLRY--LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
              R    ++ L+Y  L   +D  LE G  VERHL DGD VLFNRQPSLHK+SI+ H +K+
Sbjct: 436  SKRGTTFKVFLKYGNLNLMADQ-LEEGDVVERHLEDGDIVLFNRQPSLHKLSILSHFVKV 494

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
             P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE +ELM V   + +P++  P++ 
Sbjct: 495  RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGEPIIA 554

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMNILMWW----EDFDGKVPQPTILKPRPLWTGKQVF 581
             +QD +     ++ +D F ++  F  I  +       FD  +P P +LKP+ LWTGKQVF
Sbjct: 555  AIQDFITAAYLLSSKDNFYDRGSFTQICGYMLQPGTKFD--LPPPAVLKPQMLWTGKQVF 612

Query: 582  NLII------PKQINLFRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGTLCKKTLGT 632
            N+++      P  +NL   A       KG    L   D  + I   E++ G + K T+G+
Sbjct: 613  NVLMRPSKESPVLVNL-DAACREFRAPKGTPRDLDPNDGWLCIRNSEIMCGVMDKSTIGS 671

Query: 633  ST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTI 691
                S+ +V+  + GP  A + +     L   W     FSIGI D       ++     +
Sbjct: 672  GKKDSVFYVMLRDFGPQVAAEAMNRLSRLSARWFTNIGFSIGITDVYPGDSLLQAKKQLV 731

Query: 692  SKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNL 751
             +A      LI+  +   LE  PG    ++ E++++ +L+  R +AG      LS+ N+ 
Sbjct: 732  EEAYAQCDALIQLFKAGKLEKAPGGDEQQNMESQISGILSKVRQQAGEQCIAELSKWNSP 791

Query: 752  KAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENS 811
              M T+GSKGS IN++QM A VGQQ + G+R+  GF DRTLPHF K    P ++GFV NS
Sbjct: 792  LIMATSGSKGSTINVAQMIALVGQQIIAGQRVQDGFQDRTLPHFPKYARQPPAKGFVRNS 851

Query: 812  YLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 871
            +  GL P EFFFHA+ GREGLIDTAVKT+ETGY+ RRL+K++ED+  +YD TVRNS  ++
Sbjct: 852  FFSGLIPSEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSSNI 911

Query: 872  IQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF-RFEMDEENWNPNYMLQEYIDDLKTI 930
            +QF YG+D +D V +E       K K   FD+ F   E    +     +L   + DL   
Sbjct: 912  VQFQYGDDKLDPVDMEG------KAKPVHFDRTFTHAETTTYSKEDRGLLPSEVMDL--- 962

Query: 931  KELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDM 990
               R +   E  KL  DR+ L       G+S          L +  +    +D    +  
Sbjct: 963  --CRQMLAPERAKL--DRFDLL------GNS----------LEYTDRSDHGIDQLESNRD 1002

Query: 991  HPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREA 1050
                + + +    +RL    G +  ++E Q        + L  T          +L+ + 
Sbjct: 1003 FLQSIEDYIQAKADRLHSATGTEADTLEGQ--------MALSHTV---------KLSAKT 1045

Query: 1051 FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL 1110
                I    +++ ++ V PG  +G V AQSIGEP TQMTL TFH+AGV+  ++T GVPR+
Sbjct: 1046 LTTFITSCLTKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRI 1105

Query: 1111 REIINVAKKIKTPSLSVFLKPGVNSTKERAKN-VQCALEYTTLRSVTEATEVWYDPDPMG 1169
            +EIIN +K+I TP ++  L   VN    RA   V+  +E T ++ +    E  +      
Sbjct: 1106 KEIINASKEISTPIITCEL---VNKEDVRAAQIVKGRVEKTFIKDIIYYIEEAWTGSVAY 1162

Query: 1170 TIIEEDVEFVKSY-YEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFD 1228
              I+ D   +++   E+   DI        L  I+ ++    D  L   +    I+  F 
Sbjct: 1163 INIKIDFSTIQALQLELTLRDI--------LNAIKKHKRFRSD-DLKFRSFGSHIHI-FV 1212

Query: 1229 DDLTCIFNDDNADKLI------LRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMA 1282
            D  T   +   A++        +R++ +    P  ++          ++  E+N    + 
Sbjct: 1213 DQATTKTSLTKAEQAATGSDPYIRLKHLKRLLPTIQVLGHPQCSRAIIRTDETNTTNTLL 1272

Query: 1283 LRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRH 1342
            + G  L A M  + +   RT +N+++E  +VLGIEA R  ++DE+  V+   G  ++ RH
Sbjct: 1273 VEGYGLRACMTTDGIFGTRTRTNNIMETKDVLGIEAARTTIVDEISDVMKDMG--IDPRH 1330

Query: 1343 LAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTEN 1402
            + +L D MTY+G ++ ITR G+ +     +   SFE+T D L DA     +D + GV+E 
Sbjct: 1331 MQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLVEGVSEC 1390

Query: 1403 IMLGQLAPIGTG 1414
            I+LG+   +GTG
Sbjct: 1391 IILGKSVSLGTG 1402


>gi|31127008|gb|AAK11873.2| RNA polymerase II largest subunit [Bothropolys multidentatus]
          Length = 624

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/628 (59%), Positives = 469/628 (74%), Gaps = 8/628 (1%)

Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
           SARTVITPDP + IDQ+GVP SIA NLT+PE VTP+NI++++ELV  G +  PG   AKY
Sbjct: 1   SARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNNQYPG---AKY 57

Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
           IIRD+G+R+DLR+  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGH I+++P
Sbjct: 58  IIRDNGERIDLRFHPKPSDLHLQCGYKVERHVRDGDVVIFNRQPTLHKMSMMGHHIRVLP 117

Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
           +STFR+NLSVT+PYNADFDGDEMN+HVPQS ETRAE+ EL +VP+ I++PQSNRPVMGIV
Sbjct: 118 WSTFRMNLSVTTPYNADFDGDEMNLHVPQSMETRAEIEELAIVPRQIITPQSNRPVMGIV 177

Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
           QDTL   RK+TKRD F+EKD  MN+LM+   +DGK+P P ILKP+PLWTGKQ+F+LIIP 
Sbjct: 178 QDTLTAVRKMTKRDVFLEKDQMMNLLMFLPIWDGKMPMPAILKPKPLWTGKQLFSLIIPG 237

Query: 588 QINLFRTAAWHADNDKG----ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            +N  R    H D++       ++ GDT V +E GEL+ G LCKKTLGTS GSL+H++  
Sbjct: 238 NVNCIRAHYSHPDDEDDSPYKWISPGDTKVLVEHGELICGILCKKTLGTSAGSLLHIVML 297

Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
           E+G   A  F  H Q ++N WLL    SIGI DTIAD +T   I ++I KAK +V  +I+
Sbjct: 298 ELGWGVAGLFYWHIQMVINNWLLLEGHSIGIDDTIADPQTYIDIQNSIKKAKQDVIEVIE 357

Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
           +A +  LEP PG T+ ++FEN+VN++LN ARD+ GSSA+KSLSE NN K+MV +G+KG  
Sbjct: 358 KAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGSSAEKSLSEFNNFKSMVVSGAKGXX 417

Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
           INISQ+   VGQQNVEGKRIPFGF  RTLPHF K+DYGPESRGFVENSYL GLTP EFFF
Sbjct: 418 INISQVIXXVGQQNVEGKRIPFGFCKRTLPHFIKNDYGPESRGFVENSYLAGLTPSEFFF 477

Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
           HAMGGREGLIDTAVKT+ETGYIQRRL+KAME IM  YDGT+RNS+G +IQ  YGEDG+D 
Sbjct: 478 HAMGGREGLIDTAVKTAETGYIQRRLIKAMESIMATYDGTIRNSVGQLIQLRYGEDGLDG 537

Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
             +E Q L +LK     F+K F+F++  E        ++ + DL    ++ +  + E + 
Sbjct: 538 GAVEFQALPTLKPSNKAFEKKFKFDVSNERQLKRVFNEDIVKDLMGSAQIVNELEKEWET 597

Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKR 971
           L+ DR +L   I   GDS   LP NL R
Sbjct: 598 LKRDR-ELLRNIFPKGDSKVVLPCNLTR 624


>gi|367014307|ref|XP_003681653.1| hypothetical protein TDEL_0E01990 [Torulaspora delbrueckii]
 gi|359749314|emb|CCE92442.1| hypothetical protein TDEL_0E01990 [Torulaspora delbrueckii]
          Length = 1460

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1461 (34%), Positives = 765/1461 (52%), Gaps = 106/1461 (7%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCT 70
            ++  ++F  LS  +I   S V+I   +    E G+ P+ GG  DP++G     ++C TC 
Sbjct: 12   RISGLEFSALSAADIVAQSEVEISTRDLFDLENGRAPRAGGALDPKMGVSSSSLECTTCH 71

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALK--- 126
             N+A C GHFGH++LA P+FH+G+ K  + I++ +C NCS +L D+ D + F   L+   
Sbjct: 72   GNLASCHGHFGHIKLALPVFHVGYFKATIQILQGICKNCSAVLLDDHDRRHFLSELRRPG 131

Query: 127  IRNPKNR--LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIE--- 181
            + N +    L K+LD CK + +C     +     +G   +KK   G G+   K+  +   
Sbjct: 132  VDNLRRMGILSKVLDQCKKQRRC-----LQCGALNG--VVKKAAAGSGSASLKIIHDTFR 184

Query: 182  --GMKMIAEYKAQRKKNDD----QEQLPEPVER-KQTLTAERVLGVLKRISDEDCQLLGL 234
              G K + E        D+      +L   V+R    L   + L + K++  EDC+LLG+
Sbjct: 185  WAGKKSVPEKDKWVGDWDEVLSHNPELERYVKRCMDDLNPLKTLNLFKQLKPEDCELLGI 244

Query: 235  NP--KYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQER 281
            +   K  RP+  I + LP PP  +RPS           DDLT +L  I+  +  ++    
Sbjct: 245  DSSNKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKSGLE 304

Query: 282  NGAPAHIISEFAQLLQFHIATYFDNE------LPGQPRATQRSGRPIKSICSRLKAKEGR 335
             G   + + E    LQ  +A Y +++      +PG      +  +PI+  C RLK K+GR
Sbjct: 305  KGISINNMMEHWDYLQLSVAMYINSDSVNPAMMPGASSGGGKV-KPIRGFCQRLKGKQGR 363

Query: 336  IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 395
             RGNL GKRVDFS RTVI+PDP ++ID++ VP  +A  LTYPE VT YN ++L++L+  G
Sbjct: 364  FRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRQKLQQLLING 423

Query: 396  PHPPPGKTGAKYIIR-DDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSL 453
            P+  PG   A Y+++ D+  R +LRY  +     +L +G  VERHL DGD VLFNRQPSL
Sbjct: 424  PNVHPG---ANYLLKKDEDARRNLRYGDRVKLAKNLRVGDVVERHLEDGDVVLFNRQPSL 480

Query: 454  HKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKC 513
            H++SI+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   
Sbjct: 481  HRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNN 540

Query: 514  IVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED----FDGKVPQPTIL 569
            +++P+S  P++   QD + G   I+ +D+F ++     +L    D    FD  +P P I+
Sbjct: 541  LLTPKSGEPIIAATQDFITGSYLISHKDSFFDRGSLTQLLSMMSDGNLQFD--IPAPAIM 598

Query: 570  KPRPLWTGKQVFNLII------PKQINL-FRTAAWHADNDKGI---LTAGDTLVRIEKGE 619
            KP  LWTGKQVF+L+I      P  INL  +   +     K +   ++  D  V I   E
Sbjct: 599  KPCYLWTGKQVFSLLIKPNKKSPVVINLDAKNKVFIPPKSKSLPSEMSQNDGYVIIRGSE 658

Query: 620  LLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            +LSG + K  LG     S+ + I  + GP  A   +     L   +L    FSIGI D  
Sbjct: 659  ILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARYLGNRGFSIGISDVT 718

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
                  +   D +  A      LI       LE +PG    ++ E K+  +L+  R+E G
Sbjct: 719  PADDLKKKKEDMVEFAYAKCDELIDSYNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVG 778

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
                  L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHF K+
Sbjct: 779  DVCINELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKN 838

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
               P+S+GFV NS+  GLTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  
Sbjct: 839  SKTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSC 898

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIE--SQTLDSLKMKKSEFDKAFRFEMDEENWNP 916
            +YD TVR S   ++QF YG DG+D + +E  +Q ++ ++     F+    F   E    P
Sbjct: 899  QYDNTVRTSSNGIVQFTYGGDGLDPMEMEGNAQPVNFVRSWNHAFN--VTFNNTERGLFP 956

Query: 917  NYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNA 976
             Y ++E  D +      R +    V KL         E     D+     ++LK  +   
Sbjct: 957  -YQIEEETDKILAPLMNRLIRYDNVGKLVPKEKDALIEYIDQNDAERNFYLSLKSFM-RG 1014

Query: 977  QKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFA 1036
            +       R+   M      E +D+     K +  ++    +  +N     + L R T  
Sbjct: 1015 KAELLASVRKQRGMK-----ELLDEPGPEFKNIDFDE----DVPENIRHSVDQLCRITGD 1065

Query: 1037 SKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1096
            S          RE  +  I    S++ ++ V PG  +G + AQSIGEP TQMTL TFH+A
Sbjct: 1066 S---------VREFLKIAI----SKYRRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFA 1112

Query: 1097 GVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCALEYTTLRSV 1155
            GV++ NVTLGVPR++EIIN +K I TP ++  L   VN   ER A+ V+  +E T L  V
Sbjct: 1113 GVASMNVTLGVPRIKEIINASKVISTPIINAVL---VNDNDERAARVVKGRIEKTLLSDV 1169

Query: 1156 TEATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDK-K 1213
                +  Y  +     +  D+  + K   E+  EDIA        L+I+ +   ++DK K
Sbjct: 1170 AFYIQDVYQDNLSFMQVRIDLNTIDKLQLELTIEDIAVAITRAPKLKIQASDVTILDKDK 1229

Query: 1214 LSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKI 1273
            +++    E    +    ++    + + + +  R++ +    P G +     +    +  +
Sbjct: 1230 IAINVFPEGYKAK---SISTSAKEPHENDVFFRMQQLRRSLP-GIVVKGLPDISRAVINV 1285

Query: 1274 ESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
              +   E+ + G  L  VM  + V   +T +NH++E+  VLGIEA R +++ E+   +S 
Sbjct: 1286 RDDTKRELLVEGYGLRDVMSTDGVVGHKTATNHILEVFSVLGIEAARASIIGEIDYTMSN 1345

Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
             G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T D L DAA + + 
Sbjct: 1346 HGMSVDPRHIQLLGDVMTYKGEILGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMKR 1405

Query: 1394 DYLRGVTENIMLGQLAPIGTG 1414
            D + GV+E I+LGQ   IGTG
Sbjct: 1406 DAVEGVSECIILGQTMSIGTG 1426


>gi|294659690|ref|XP_462102.2| DEHA2G12980p [Debaryomyces hansenii CBS767]
 gi|218511816|sp|Q6BI69.2|RPC1_DEBHA RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
            polymerase III subunit C1; AltName: Full=DNA-directed RNA
            polymerase III largest subunit
 gi|199434160|emb|CAG90588.2| DEHA2G12980p [Debaryomyces hansenii CBS767]
          Length = 1457

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1509 (33%), Positives = 789/1509 (52%), Gaps = 154/1509 (10%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCTA 71
            ++ ++FG LS  +I   S V++   +    E+G+ PK GG  D ++G      +C TC  
Sbjct: 13   IKGIEFGALSAKDIIAQSEVEVHTRDLYDLEKGRIPKDGGALDTKMGISSNANECATCHG 72

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALK---I 127
            N+A C GHFGH++LA P+FH+G+ K  + +++ +C NCS +L DE   + F   L+   I
Sbjct: 73   NLASCHGHFGHIKLALPVFHVGYFKATIQVLQCICKNCSAVLLDEQTKRSFLNDLRRPHI 132

Query: 128  RNPKNR--LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKM 185
             N +    LKK+L+ CK + +C   + ++         +KK   G G    K+  +  + 
Sbjct: 133  DNLRRMKILKKLLEQCKKQRRCLNCNHVN-------GVVKKAASGAGPAALKIVHDTFRW 185

Query: 186  IAEYKAQRKKNDDQE---------QLPEPVER-KQTLTAERVLGVLKRISDEDCQLLGLN 235
            I +     K   D+E         +L + V+R    L   +VL + K+IS  DC+LLG++
Sbjct: 186  IGKKATPEKDLWDKEFDEVFSRNPELEKFVKRIHDDLNPLKVLNLFKQISPSDCELLGID 245

Query: 236  -PKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAP 285
              +  RP+  I + LP PP  +RPS         DDLT +L  I+  +  ++     G  
Sbjct: 246  SARGGRPEMYIWRYLPAPPVCIRPSVMMDAQSNEDDLTIKLTEIVWTSSLIKAGIEKGIS 305

Query: 286  AHIISEFAQLLQFHIATYFDNE-----LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 340
             + + E    LQ  +A Y +++     L        +S +PI+  C RLK K+GR RGNL
Sbjct: 306  INNLMEQWDYLQLSVAMYINSDSANPALLPSSGGGSKSSKPIRGFCQRLKGKQGRFRGNL 365

Query: 341  MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 400
             GKRVDFS RTVI+PDP + ID++ VP  +A  LTYPE  T YN ++L++L+  GP+  P
Sbjct: 366  SGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQKLILSGPNVHP 425

Query: 401  GKTGAKYIIR-DDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSI 458
            G   A Y+++ ++  + +LR+  +     +L +G  VERH+ DGD VLFNRQPSLH++SI
Sbjct: 426  G---ANYLLKQNESAKRNLRFGDRVKLAKNLHIGDVVERHIEDGDIVLFNRQPSLHRLSI 482

Query: 459  MGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 518
            + H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   +++P+
Sbjct: 483  LSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNIHVPQTEEARAEAINLMGVKNNLLTPK 542

Query: 519  SNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK--VPQPTILKPRPLWT 576
            S  P++   QD + G   ++ +D+F ++   + +L    D D +  +P P I KP  LWT
Sbjct: 543  SGEPIIAATQDFITGSYLVSHKDSFFDRASLVQLLCMMSDADIQFDIPPPAIFKPVMLWT 602

Query: 577  GKQVFNLII-PKQ-----INLFRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGTLCK 627
            GKQVF+L+I P +     INL      +    KG    ++  D  V I   ++LSG + K
Sbjct: 603  GKQVFSLLIKPNKKSNVVINLDAKNKTYTPPAKGFPNEMSPNDGFVIIRGSQILSGVMDK 662

Query: 628  KTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMET 686
             TLG     S+ + I  + GPD A   +     L   +L    FSIGI D I  +   + 
Sbjct: 663  STLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARYLGNRGFSIGINDVIPGSDLKQK 722

Query: 687  INDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLS 746
                + +A      LI      +LE +PG    ++ E K+  +L+  R+E G      L 
Sbjct: 723  KELMVEQAYLKCDELIDLYNRGNLETQPGCNEEQTLEAKIGGLLSKVREEVGEICINELD 782

Query: 747  ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRG 806
             +N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHFTK+   P+S+G
Sbjct: 783  SANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNSKTPQSKG 842

Query: 807  FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRN 866
            FV NS+  GLTP EF FH++ GREGL+DTAVKT+ETGY+ RRL+K+++D+  +YD TVRN
Sbjct: 843  FVRNSFFSGLTPPEFLFHSISGREGLVDTAVKTAETGYMSRRLMKSLDDLSAQYDHTVRN 902

Query: 867  SLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDD 926
            S   ++QF YG DG+D   +E        +++ +      F+++++   P Y + E +D 
Sbjct: 903  SSNGIVQFTYGGDGLDPFDMEGDARPVNFVRQWDHAYNITFDIEDKGLLP-YQIIELVDS 961

Query: 927  LKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRR 986
            +    E R V           RY    +I    DS     ++      +A++ F    R 
Sbjct: 962  ILHPLEDRLV-----------RYDNVGKIIPLEDSDKIEYIDQN----DAEREFYQSIRE 1006

Query: 987  PSDMHPMEVVEAVD-KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHR 1045
             +     ++ E  + K+ +     P ED + ++    + +  N L              +
Sbjct: 1007 FTTNKATKLAEIREKKMLKPFLTEPAEDFIRLDESDESLVAINQL-------------SK 1053

Query: 1046 LTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1105
            ++  +    + +   ++ ++ V PG  +G + AQSIGEP TQMTL TFH+AGV++ NVTL
Sbjct: 1054 VSANSINKFLEQCIYKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1113

Query: 1106 GVPRLREIINVAKKIKTPSLSVFLKPGVNSTKE-RAKNVQCALEYTTLRSVTEATEVWYD 1164
            GVPR++EIIN +K I TP ++  L   VN   E  A+ V+  +E T L            
Sbjct: 1114 GVPRIKEIINASKVISTPIINSVL---VNDDDEIAARVVKGRVEKTLL------------ 1158

Query: 1165 PDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKIN 1224
                     EDV +         ED+    ++   ++I+LN    +  +L++ ++A  I 
Sbjct: 1159 ---------EDVAYFI-------EDVYKNNMAYLSIKIDLNTIEKLQLELNIESIAHSIA 1202

Query: 1225 QE-----FDDDLTCIFNDDNADKLILR----IRIMNDEAPKGELNDESAEDDVFLK---- 1271
                      D++    D     + LR    I +M + +   +  D S  + +F +    
Sbjct: 1203 NAPKLKILAGDVSVTGKDRINVLVTLREPKSINLMKNASADYKGTDASIVNSLFFRMQHL 1262

Query: 1272 --------------------KIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEII 1311
                                 I  +   E+ + G  L  VM  + V   +T++NH++E+ 
Sbjct: 1263 KRALPRICIKGLPDISRAVINIRDDGKKELLVEGYGLKEVMSTDGVVGTKTSTNHILEVF 1322

Query: 1312 EVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP 1371
            +VLGIEA R +++ E+   +S  G  V+ RH+ +L D MTY+G ++ ITR G+++     
Sbjct: 1323 QVLGIEAARASIIGEIDYTMSKHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSV 1382

Query: 1372 MMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL 1431
            +   SFE+T D L DA+ + ++D + GV+E I+LGQ   IGTG   L  + ++ K A+E+
Sbjct: 1383 LQLASFEKTTDHLFDASFYMKNDKIEGVSECIILGQTMNIGTGAFKLVNSFDVDKKALEM 1442

Query: 1432 QLPSYMEGL 1440
            + P+  EG+
Sbjct: 1443 K-PTLFEGM 1450


>gi|238504894|ref|XP_002383676.1| DNA-directed RNA polymerase III largest subunit, putative
            [Aspergillus flavus NRRL3357]
 gi|220689790|gb|EED46140.1| DNA-directed RNA polymerase III largest subunit, putative
            [Aspergillus flavus NRRL3357]
          Length = 1436

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1456 (34%), Positives = 765/1456 (52%), Gaps = 141/1456 (9%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPK---PGGLSDPRLGTIDRKMKCETCTA 71
            ++ ++FG+LS D+I    VV++   +  +  + +     G  D R+G   +   C+TC  
Sbjct: 24   IKELKFGVLSNDDIVSQGVVEVSDRKFFDLDRDRSVVAHGPLDSRMGVSSKTASCQTCGG 83

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIRNP 130
             +  C GHFGH++L  P FH+G+ K V++I++ +C  CS IL  E + + F + ++    
Sbjct: 84   ALQVCNGHFGHVKLVLPSFHVGYFKRVITILQEICKECSHILLPEGERRAFLREMRRPGL 143

Query: 131  KN--RL---KKILDACKNKTKCE-GGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM- 183
             N  RL   K+I + C+    C+  G    V  + G   LK       A     +++ + 
Sbjct: 144  DNLRRLQIAKRINERCRKTRNCDRCGATNGVVKKAGTSALKITHDKFRAFNASTSMKKIP 203

Query: 184  ---KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
               K++ +   +  ++ + E      + +  + A RVL + KRISD DC+LLGL+PK AR
Sbjct: 204  PPSKIVFDRSFEEARSHNPEVEKHHKKAQDDMNALRVLNLFKRISDTDCELLGLDPKEAR 263

Query: 241  PDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            P+  + Q +P PP  +RPS         DDLT +L  I++ N NL+     GAP   I E
Sbjct: 264  PEMFLWQYIPAPPVCIRPSVGQDASSTEDDLTAKLGDIVQSNINLKNALLKGAPVQTIME 323

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
                +Q  IA Y ++++PG  +A    G+PI+    RLK K+GR RGNL GKRVDFS RT
Sbjct: 324  CWDYMQLQIAVYINSDVPGLNKADL--GKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRT 381

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VI+PDP + +D++ VP  +A N+TYPE VT YN E+L++ V  G    PG   A Y+++ 
Sbjct: 382  VISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG---ANYLVKK 438

Query: 412  DGQ-RLDLRY--LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
                +  L+Y  L   +D  L+ G  VERH+ DGD VLFNRQPSLHK+SI+ H  K+ P+
Sbjct: 439  GSTFKTFLKYGSLNMIADQ-LQEGDVVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPH 497

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
             TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE +ELM V   + +P++  P++  +Q
Sbjct: 498  RTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGEPIISAIQ 557

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWW----EDFDGKVPQPTILKPRPLWTGKQVFNLI 584
            D +     ++ +D F ++  F  I ++       FD  +P P +LKP+ LWTGKQVFN++
Sbjct: 558  DFISAAYILSSKDNFFDRRSFTQICLYMLGPETRFD--LPPPAVLKPQMLWTGKQVFNIL 615

Query: 585  I------PKQINLFRTAAWHA---DNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTST- 634
            +      P  +NL      +    D     L   D  + I   E++ G + K T+G+   
Sbjct: 616  MRPNKDDPVMVNLDAACREYKPPKDGRPKDLDPKDGWLVIRNSEVMCGVMDKATIGSGKK 675

Query: 635  GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKA 694
             ++ +V+  + GP AA + +     L   W     FSIGI D     K +++ +D +  A
Sbjct: 676  DNVFYVMLRDFGPPAAAEGMNRLSRLSARWFTNMGFSIGITDVYPSEKLLQSKHDLVETA 735

Query: 695  KNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAM 754
                  +I Q +  +LE  PG   +++ ENK++ +L+  R +AG      LS+ N+   M
Sbjct: 736  YAQCDEVIAQYKAGTLETFPGCDELQTMENKLSGILSKVRQQAGDECIAQLSKYNSPLIM 795

Query: 755  VTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLR 814
             T+GSKGS IN+SQM A VGQQ + G+R+  GF DRTLPHF K+   P S+GFV NS+  
Sbjct: 796  ATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFS 855

Query: 815  GLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQF 874
            GL P EF FHAM GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD TVRNS G ++QF
Sbjct: 856  GLEPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSGHIVQF 915

Query: 875  LYGEDGMDSVWIESQTLDSLKMKKSEFDKAF------RFEMDEENWNPNYML---QEYID 925
             YG+D +D V +E       K K   FD+ F       ++ DE +  P  ++   +E + 
Sbjct: 916  QYGDDKLDPVDMEG------KAKPVHFDRTFIHSEATTYDNDERSLQPAEIMEVCEEMLS 969

Query: 926  DLKTIKELRDVFDAEVQKLE-----ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTF 980
              +     +D+ D E+  ++      D+++ A +   S      +     +LI    +  
Sbjct: 970  KERAKLVRKDLLDVELGYMDRSNHGVDQFESARDFLES--IQQYVSTKADKLI---SRGG 1024

Query: 981  KVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRV 1040
             +D   PSD    + +    KL E+                         LR TF S  +
Sbjct: 1025 DID---PSDERSQQGLNHTGKLTEK------------------------TLR-TFISACL 1056

Query: 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
            +K                   + ++ V PG  +G V AQSIGEP TQMTL TFH+AGV+ 
Sbjct: 1057 MK-------------------YKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAG 1097

Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE-AT 1159
             ++T GVPR++EIIN +K+I TP +S  L    N    R   V+  +E T LR +T    
Sbjct: 1098 MSITQGVPRIKEIINASKEISTPVVSCELVTKDNVIAARI--VKGRIEKTYLRDITHYVR 1155

Query: 1160 EVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE-KISPWLLRIELNREMMVDKKLSMAA 1218
            E W   +   T        VK  ++   +D+A E KI   L  I+ +R    D  L    
Sbjct: 1156 ETWTGKEAYIT--------VKINWKTI-QDLALELKIQDILAAIKNHRRFKSD-DLKFRC 1205

Query: 1219 VAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNML 1278
                I+   D ++     D       LR++ +    P  ++          ++  +++  
Sbjct: 1206 QRSHIHIYMDTEIAATSADP-----FLRLKHLKRLLPDIQVLGHPQAYRAIIRTDDTSTT 1260

Query: 1279 TEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYV 1338
              + + G  L A M    VD  RT++N+++E+ EVLGIEA R  ++ E+  V+      +
Sbjct: 1261 NTLLVEGYGLRACMNTIGVDGLRTSTNNVMEMREVLGIEAARTTIVREISEVMK--DMDI 1318

Query: 1339 NYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRG 1398
            + RH+ +L D MTY+G ++ ITR G+ +     +   SFE+T D L DA     +D + G
Sbjct: 1319 DPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLVEG 1378

Query: 1399 VTENIMLGQLAPIGTG 1414
            V+E I++G+   +GTG
Sbjct: 1379 VSECIIMGKTVSLGTG 1394


>gi|345567741|gb|EGX50669.1| hypothetical protein AOL_s00075g95 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1442

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1447 (34%), Positives = 765/1447 (52%), Gaps = 111/1447 (7%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGET-TERGK-PKPGGLSDPRLGTIDRKMKCETCTA 71
            +++ V+FGILS  ++ + +V+++       E G+ P   G+ DPR+G  ++   C+TC  
Sbjct: 24   RIKEVKFGILSTQDMVKQAVIEVSTDRLFNETGRQPTENGVLDPRMGISNKTDTCKTCGE 83

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPK 131
            N+  C GHFGH++LA P FHIG+ K ++S+++++C  CS IL D    +     +IR P 
Sbjct: 84   NLQACNGHFGHVKLALPAFHIGYFKHIISVLQNICKECSAILLDSSMRR-SYLKEIRKPG 142

Query: 132  -------NRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK--------NKGGCGAQQP 176
                      KKI + C+    C     I+   +    PLK         N     ++ P
Sbjct: 143  IDNLRRVQICKKINEQCRKTKACFVCGAINGTVKK-VGPLKVIHDKFRAFNSSNAASKVP 201

Query: 177  KLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
                   K+I +      K  +Q+      +    L   +VL + K++S  DC+LLG++P
Sbjct: 202  PEA----KVIFDKSFMEAKKTNQDLDKHIRKAMDDLNPLKVLNLFKKVSPADCELLGMDP 257

Query: 237  KYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAH 287
               RP+  + Q +P PP  +RPS         DDLT +LA I   +  +R     G P  
Sbjct: 258  GQGRPEMFLWQYMPAPPVCIRPSVSQEDASNEDDLTVKLAQITETSALIRAGLLKGIPIQ 317

Query: 288  IISEFAQLLQFHIATYFDNELPGQPRATQRSG-RPIKSICSRLKAKEGRIRGNLMGKRVD 346
             + E  + +Q  IA Y +++LPG     Q  G +PI+ IC RLK K+GR RGNL GKRVD
Sbjct: 318  TLMEQWEWMQLQIAQYVNSDLPG----VQLQGTKPIRGICQRLKGKQGRFRGNLSGKRVD 373

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FS RTVI+PDP ++I+Q+ VP  +A NLTYPE VT YN  +L+ELV  G    PG   A 
Sbjct: 374  FSGRTVISPDPNLSIEQVAVPMLVAKNLTYPERVTDYNRGKLQELVRNGVDKYPG---AN 430

Query: 407  YIIRDDGQ-RLDLRYLKK-SSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIK 464
            ++++ D Q +  L++  +  +   L +G  VERHL DGD VLFNRQPSLHK+SI+ H +K
Sbjct: 431  FVVKKDLQYKTWLKFGNRDKTAQELAIGDIVERHLEDGDVVLFNRQPSLHKLSILSHYVK 490

Query: 465  IMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 524
            + P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E R E + LM V   + +P++  P++
Sbjct: 491  VRPWKTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAINLMGVKNNLCTPRNGEPII 550

Query: 525  GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV--PQPTILKPRPLWTGKQVFN 582
              +QD +     ++ +D F ++  F  + M+  + + ++  P P ++KP  +WTGKQ+F+
Sbjct: 551  AAIQDFITAAYLLSNKDNFFDRKSFATLCMFMVNGNEQIDLPPPAVIKPEAMWTGKQLFS 610

Query: 583  LIIP--KQINLFRTAAWHADNDKGI------LTAGDTLVRIEKGELLSGTLCKKTLGTST 634
            ++I   K+  +         + K +      L   D  + I   E++ G + K T+G+  
Sbjct: 611  VLIKPNKKSKVVLNLDAKCRDFKAVPGMAPDLCPNDGWLVIRGSEVMCGLMDKSTVGSGK 670

Query: 635  -GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISK 693
              S+ +VI  + G D A   +     L   WL    FSIGI D     K  +     +  
Sbjct: 671  KSSVFYVILRDYGADEAVAAMNRLAKLCARWLGNRGFSIGINDVSPGQKLQDLKQMHVMA 730

Query: 694  AKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKA 753
            A     NLI   +   LE   G     + ENK++ VL+  RD+ G      LS  N+   
Sbjct: 731  AYKECDNLIDDFRLGRLEKAAGCDEETTLENKISGVLSKVRDKVGDICMSELSRMNSPLI 790

Query: 754  MVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYL 813
            M  +GSKGS IN+SQM ACVGQQ + GKR+P GF DR+LPHF K+   P S+GFV NS+ 
Sbjct: 791  MANSGSKGSKINVSQMVACVGQQIISGKRVPNGFQDRSLPHFQKNSKEPPSKGFVRNSFF 850

Query: 814  RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQ 873
             GLTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD TVRNS   V+Q
Sbjct: 851  SGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQYDHTVRNSSAGVVQ 910

Query: 874  FLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKEL 933
            F YG D +D V +E      + + ++ ++ A     D  N +P+ +  E I      +EL
Sbjct: 911  FQYGGDNLDPVDMEGDA-KPVNLVRT-YNHAENLTWD--NNDPSLLPYEII---AMCREL 963

Query: 934  RDVFDAEVQKLEADRYQLA--TEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMH 991
             D FD    +LEA   +L    EI +         V  ++ +++  K   V+  R     
Sbjct: 964  LD-FD----ELEAMLARLGPTDEIDSK--------VAFRQSLYHFVKERAVECAR----- 1005

Query: 992  PMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAF 1051
                      ++ER+ ++   +P  V++ +    + + L  +  A   V + H+++    
Sbjct: 1006 ----------IRERVGLMACLEP--VDSDEYDMGYIDSL--NATAKAIVDRVHKISARTL 1051

Query: 1052 EWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLR 1111
               I +  +++ +S V PG  +G V AQSIGEP TQMTL TFH+AGV++ NVTLGVPR++
Sbjct: 1052 REFISQCMTKYSRSKVEPGTAVGAVGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIK 1111

Query: 1112 EIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCALEYTTLRSVTEATEVWYDPDPMGT 1170
            EIIN +K I TP +   L   VN +  R A+ V+  +E T L  +    E    PD    
Sbjct: 1112 EIINASKSISTPIIKCEL---VNKSDIRSARYVKGRIEKTYLEDIIFYIEDVCSPDDSYI 1168

Query: 1171 IIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAA--VAEKINQEF 1227
             I+ D   + K   E+  EDI         L+I+ ++  +   ++ +    ++E+  +  
Sbjct: 1169 SIKIDEATIDKLGLELTIEDIMTAITRAPKLKIDKSQLKVTGSRIRIYVYELSEREMKRS 1228

Query: 1228 DDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVN 1287
             +DL+          +  RI+ +    P+  +          +   ES+    + + G  
Sbjct: 1229 KEDLS----------VHQRIQALKRVLPRVVVKGYPEATRAVISTDESSGNNTLCVEGYG 1278

Query: 1288 LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILC 1347
            L   M  + V   +T +N ++E+  VLGIEA R  ++DE+   +   G  V+ RH+ +L 
Sbjct: 1279 LRQCMNTDGVVGTKTKTNSVMEMRTVLGIEAARFTIIDEISFTMREHGMDVDPRHIQLLG 1338

Query: 1348 DTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQ 1407
            D MTY+G ++ ITR G+ +     +   SFE+T D L DAA   + D + GV+E I+LGQ
Sbjct: 1339 DVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTTDHLFDAAFHTKKDKIEGVSECIILGQ 1398

Query: 1408 LAPIGTG 1414
               IGTG
Sbjct: 1399 SMGIGTG 1405


>gi|226876191|gb|ACO89416.1| RNA polymerase II largest subunit, partial [Exophiala xenobiotica]
          Length = 857

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/871 (47%), Positives = 552/871 (63%), Gaps = 36/871 (4%)

Query: 119 HKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKL 178
            +F+ A+ +R+ K R   +    K +  CE  D  + P Q  + P +   GGCG  QP++
Sbjct: 2   EEFRHAISLRDRKRRFDAVWRLSKPRLICEA-DPPEEPDQLVKGPPQPKHGGCGNAQPEI 60

Query: 179 TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
              G+++ A +K  RK +DD++  P+    K+ +  +  L   + ++DE  +++GL+  Y
Sbjct: 61  RRTGLQLWATWKP-RKGDDDEDITPD----KKRIFPQDALNTFRTLTDETLEMMGLSLDY 115

Query: 239 ARPDWMILQVLPIPPPPV-------------RPSDDLTHQLAMIIRHNENLRRQERNGAP 285
           ARP+WMIL  LP+PPPPV             R  DDLT +L  IIR N+ + R E +G P
Sbjct: 116 ARPEWMILSALPVPPPPVRPSISVDGSGQGQRGEDDLTFKLGDIIRANQAVLRTEVDGTP 175

Query: 286 AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
            HI  +   LLQ+HIATY DNE+ G  +A  +SGRPIKSI +RLK KEGR+R NLMGKRV
Sbjct: 176 DHIKIDLCDLLQYHIATYMDNEIAGLEKAQHKSGRPIKSIRARLKGKEGRLRQNLMGKRV 235

Query: 346 DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
           DFSARTVIT DP +++D++GVP SIA  LTYPETVTP+N+++LK LV  GP+  PG   A
Sbjct: 236 DFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPFNLDKLKRLVANGPNEHPG---A 292

Query: 406 KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
           +Y+IRD G+R+DLR                                          R+++
Sbjct: 293 RYVIRDTGERIDLRXXXXXXXXXXXXXXXXXXXXXX---XXXXXXXXXXXXXXXXXRVRV 349

Query: 466 MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
           MPYSTFRLNLSVT+PYNADFDGDEMN+HVPQ+ E+RAE+  L MVP  IVSPQ N P+MG
Sbjct: 350 MPYSTFRLNLSVTTPYNADFDGDEMNLHVPQNEESRAELANLCMVPLNIVSPQRNGPLMG 409

Query: 526 IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
           IVQDTL G  KI +RD F+ +D  MN++MW  D+DG +PQP I+KP P WTGKQ+ ++++
Sbjct: 410 IVQDTLCGIYKICRRDIFLTRDQVMNVMMWVPDWDGVIPQPAIIKPTPRWTGKQMISMVL 469

Query: 586 PKQINLFRTAA----WHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVI 641
           PK +NL R  A    +    D+ +    DT + + +G L+ G   KK +GTS G +IH I
Sbjct: 470 PKALNLERMEAKGEAFKDLKDQTLSPINDTGLMVLEGNLMFGLFSKKFVGTSAGGIIHTI 529

Query: 642 WEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNL 701
           + E G +AA  F    Q +VNYWLL   FSIGIGDT+ D  T+  I + +   K +V  L
Sbjct: 530 FNEFGHEAAMAFFNGAQTVVNYWLLHVGFSIGIGDTVPDPDTVRKIQEAVDDRKADVDQL 589

Query: 702 IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKG 761
              A  + LE  PG  + ++FE+KV   LN ARD+AG++ + SL + NN   M  AGSKG
Sbjct: 590 TVAAYKEDLEAAPGMNVRQTFESKVMNFLNQARDQAGTATENSLKDLNNAIQMARAGSKG 649

Query: 762 SFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEF 821
           S INI+QMTA VGQQ VEGKRIPFGF  RTLPHF KDDY   SRGFVENSYLRGLTP EF
Sbjct: 650 STINIAQMTAIVGQQAVEGKRIPFGFKYRTLPHFAKDDYSAPSRGFVENSYLRGLTPTEF 709

Query: 822 FFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
           FFHAM GREGLIDTAVKT+ETGYIQRRLVKA+E++ VKYD TVR+S G+++QFLYGEDG 
Sbjct: 710 FFHAMAGREGLIDTAVKTAETGYIQRRLVKALEEVTVKYDTTVRDSRGNIVQFLYGEDGX 769

Query: 882 DSVWIESQTLDSLKMKKSEFDKAFRFEM---DEENWNPNYMLQEYIDDLKTIKELRDVFD 938
           D   IE+Q +D + M    F   F  ++   D   W    +LQ    +++   E++++FD
Sbjct: 770 DGGHIENQKVDIITMSDEAFMNRFSVDIMSGDTSVWR-GKLLQAR--EIQGDTEIQEMFD 826

Query: 939 AEVQKLEADRYQLATEIATSGDSSWPLPVNL 969
            E++ L   R +    +    + ++ LP+N+
Sbjct: 827 EELEALRESR-EFLRRMGKGTEDNFQLPLNI 856


>gi|260946503|ref|XP_002617549.1| DNA-directed RNA polymerase III largest subunit [Clavispora
            lusitaniae ATCC 42720]
 gi|238849403|gb|EEQ38867.1| DNA-directed RNA polymerase III largest subunit [Clavispora
            lusitaniae ATCC 42720]
          Length = 1491

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1473 (34%), Positives = 777/1473 (52%), Gaps = 132/1473 (8%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGET--TERGKP-KPGGLSDPRLGTIDRKMKCETCTA 71
            ++ ++F  LS  +I   S V+I   +    E+G+  + GG  D ++GT    ++C TC  
Sbjct: 46   IKGLEFSALSARDIVAQSEVEITTRDLYDLEKGRSVREGGALDTKMGTSTNAVECSTCHG 105

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIRNP 130
            N+A C GHFGH+ LA P+FH+G+ K ++S+++ +C NC+ +L DE   + F   L+  N 
Sbjct: 106  NLATCHGHFGHVRLALPVFHVGYFKAIISVLQCICKNCAAVLLDEQTKRAFLSDLRRPNI 165

Query: 131  KNR-----LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKM 185
             N      LKK+++ CK + +C     ++         +KK   G G    K+  +  + 
Sbjct: 166  DNLRRMKVLKKVVEQCKKQRRCLKCHHVN-------GVVKKAASGAGPAALKILHDTFRY 218

Query: 186  IAEYKAQRKKNDDQE---------QLPEPVER-KQTLTAERVLGVLKRISDEDCQLLGLN 235
            + +  A  K   D+E         +L +  +R  + L   +VL + ++I+ +DC+L G++
Sbjct: 219  VGKKSAPEKDLWDREFDEVFHRNPELEKFAKRVHEDLNPLKVLNLFRQITPQDCELFGID 278

Query: 236  P-KYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAP 285
              +  RP+  I + LP PP  +RPS         DDLT +L  I+  +  ++     G  
Sbjct: 279  AARGGRPEMYIWRYLPAPPVCIRPSVMMDNQSNEDDLTVKLTEIVWTSSLIKAGIEKGIS 338

Query: 286  AHIISEFAQLLQFHIATYFDNE------LPGQPRATQRSGR-PIKSICSRLKAKEGRIRG 338
             + + E    LQ  +A Y +++      LPG    +      PI+  C RLK K+GR RG
Sbjct: 339  INNMMEQWDYLQLSVAMYINSDSANPALLPGGMGGSGSKSSKPIRGFCQRLKGKQGRFRG 398

Query: 339  NLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHP 398
            NL GKRVDFS RTVI+PDP + ID++ VP  +A  LTYPE  T YN ++L++L+  GP  
Sbjct: 399  NLSGKRVDFSGRTVISPDPNLRIDEVAVPDRVAKILTYPEKCTRYNRQKLQKLILNGPTV 458

Query: 399  PPGKTGAKYIIR-DDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKM 456
             PG   A Y+++ ++  + +L++  +      L +G  VERH+ DGD VLFNRQPSLH++
Sbjct: 459  HPG---ANYVLKQNEVAKRNLKFGDRVKLAKTLRIGDIVERHIEDGDVVLFNRQPSLHRL 515

Query: 457  SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 516
            SI+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   +++
Sbjct: 516  SILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLT 575

Query: 517  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK--VPQPTILKPRPL 574
            P+S  P++   QD + G   I+ +D+F ++   + +L    D D +  +P PT+ KP  L
Sbjct: 576  PKSGEPIIAATQDFITGSYLISHKDSFFDRASLVQLLCMMSDADMQFDIPPPTVFKPVML 635

Query: 575  WTGKQVFNLIIP--KQINLFRTAAWHADNDKGI---------LTAGDTLVRIEKGELLSG 623
            WTGKQVF+++I   K+ N+       A N   I         ++  D  V I   ++LSG
Sbjct: 636  WTGKQVFSMLIRPNKKSNVVINV--DAKNKTFIPPPKHLPNEMSPNDGFVVIRGSQILSG 693

Query: 624  TLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAK 682
             + K TLG     S+ + I  + GPD A K +     L   +L    FSIGI D    A 
Sbjct: 694  VMDKSTLGDGKKHSVFYTILRDYGPDEAAKAMNRMAKLCARYLGNRGFSIGINDVTPGAD 753

Query: 683  TMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQ 742
                    +  A      LI       LE +PG    ++ E K+  +L+  R+E G    
Sbjct: 754  LKAKKERMVEAAYAKCDELIDLYTKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCI 813

Query: 743  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGP 802
            + L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHFTK    P
Sbjct: 814  RELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKMSKTP 873

Query: 803  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 862
            +S+GFV NS+  GL+P EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+   YD 
Sbjct: 874  QSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSSYDN 933

Query: 863  TVRNSLGDVIQFLYGEDGMDSVWIE--SQTLDSLKMKKSEFDKAFRFEMDEENWN----- 915
            TVRNS   ++QF YG DG+D + +E  +Q ++       ++D A+    +++  N     
Sbjct: 934  TVRNSSNGIVQFTYGGDGLDPLDMEGDAQPVNF----NRQWDHAYNITYNQKEANLLPFQ 989

Query: 916  ----PNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKR 971
                 N +L    + L     L ++ + E+     DR     E     D+      +++ 
Sbjct: 990  IMDVVNSILAPLENKLVRYDNLGNLIEGEI----GDR----IEYIDQKDAERAFYQSIRT 1041

Query: 972  LIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1031
             +   + T     R+   + P      + KL++   +V  EDP+S+ A        N L+
Sbjct: 1042 YV-QKKATQLARLRQQKKLRPF-----LTKLEDDGDMVLDEDPVSINA-------INQLM 1088

Query: 1032 RSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLN 1091
                         ++++   E  + +   ++L++ V PG  +G + A SIGEP TQMTL 
Sbjct: 1089 -------------KISQTCVEEFLKQCLYKYLRARVEPGTAVGAIGAHSIGEPGTQMTLK 1135

Query: 1092 TFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKE-RAKNVQCALEYT 1150
            TFH+AGV++ NVTLGVPR++EIIN AK I TP ++  L   VN   E  A+ V+  +E T
Sbjct: 1136 TFHFAGVASMNVTLGVPRIKEIINAAKVISTPIINTVL---VNDEDEVAARVVKGRIEKT 1192

Query: 1151 TLRSVTEATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMM 1209
             LR V    E  Y  D     I+ D++ + K   E+  ++I     +   L+I LN E+ 
Sbjct: 1193 LLRDVAFFVEDVYKNDMAYLSIKIDLKTIEKLQLELTMDNIRQAIANAPKLKI-LNSEVS 1251

Query: 1210 V---DKKLSMAAVAEKINQEFDDDLTCIFN-DDNADKLILRI----RIMNDEAPKGELND 1261
            V   D+   +  + E  ++         +   D  + L  R+    R + D   KG  N 
Sbjct: 1252 VYGKDRINVLVTLRESKSESLARTAASDYKASDVNNSLFFRMQHLKRALPDVVIKGLPNI 1311

Query: 1262 ESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
              A     +  I  +   E+ + G  L  VM  + +   +T++NH++E+ EVLGIEA R 
Sbjct: 1312 SRA-----VINIRDDSKKELLVEGYGLKDVMSTDGIVGTKTSTNHVLEVYEVLGIEAARA 1366

Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
            +++ E+   +S  G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T 
Sbjct: 1367 SIIGEIDYTMSKHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTT 1426

Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
            D L DAA F ++D + GV+E I+LGQ   IGTG
Sbjct: 1427 DHLFDAAFFMKNDKIEGVSECIILGQTMSIGTG 1459


>gi|401623626|gb|EJS41719.1| rpo31p [Saccharomyces arboricola H-6]
          Length = 1460

 Score =  764 bits (1972), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/1468 (34%), Positives = 775/1468 (52%), Gaps = 120/1468 (8%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGETTERGK---PKPGGLSDPRLGTIDRKMKCETCT 70
            +++ ++F  LS  +I   S V++   +  +  K   PK  G  DP++G     ++C TC 
Sbjct: 12   RIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSLECTTCH 71

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE-DDHKFKQALK--- 126
             N+A C GHFGHL+LA P+FHIG+ K  + I++ +C NCS IL  E D  +F   L+   
Sbjct: 72   GNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSSILLSETDKRQFLHELRRPG 131

Query: 127  IRNPKNR--LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            + N +    LKKILD CK + +C     +     +G   +KK   G G+   K+  +  +
Sbjct: 132  VDNLRRMGILKKILDQCKKQRRC-----LHCGALNG--VVKKAAAGAGSAALKIIHDTFR 184

Query: 185  MIAEYKAQRKKNDDQE---------QLPEPVER-KQTLTAERVLGVLKRISDEDCQLLGL 234
             + +  A  K     E         +L   V+R    L   + L + K++   DC+LLG+
Sbjct: 185  WVGKKSAPEKDIWVGEWKEVLGHNPELERYVKRCMDDLNPLKTLNLFKQVKSADCELLGI 244

Query: 235  NPKY--ARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQER 281
            +      RP+  I + LP PP  +RPS           DDLT +L  I+  +  ++    
Sbjct: 245  DTTVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLE 304

Query: 282  NGAPAHIISEFAQLLQFHIATYFDNE------LPGQPRATQRSGRPIKSICSRLKAKEGR 335
             G   + + E    LQ  +A Y +++      LPG      +  +PI+  C RLK K+GR
Sbjct: 305  KGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKV-KPIRGFCQRLKGKQGR 363

Query: 336  IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 395
             RGNL GKRVDFS RTVI+PDP ++ID++ VP  +A  LTYPE VT YN  +L+ELV  G
Sbjct: 364  FRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELVVNG 423

Query: 396  PHPPPGKTGAKYIIR-DDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSL 453
            P+  PG   A Y+++ ++  R +LRY  +     +L++G  VERHL DGD VLFNRQPSL
Sbjct: 424  PNVHPG---ANYLLKKNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSL 480

Query: 454  HKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKC 513
            H++SI+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   
Sbjct: 481  HRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNN 540

Query: 514  IVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED----FDGKVPQPTIL 569
            +++P+S  P++   QD + G   I+ +D+F ++     +L    D    FD  +P P I+
Sbjct: 541  LLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGVEQFD--IPPPAIM 598

Query: 570  KPRPLWTGKQVFNLII------PKQINL-FRTAAWHADNDKGI---LTAGDTLVRIEKGE 619
            KP  LWTGKQVF+L+I      P  INL  +   +     K +   ++  D  V I    
Sbjct: 599  KPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPSEMSQNDGFVIIRGSN 658

Query: 620  LLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            +LSG + K  LG     S+ + I  + GP  A   +     L   +L    FSIGI D  
Sbjct: 659  ILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMSKLCARFLGNRGFSIGINDVT 718

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
                  +   + +  A      LI +     LE +PG    ++ E K+   L+  R+E G
Sbjct: 719  PADDLKQKKEELVEIAYRKCDELITEFNRGELETQPGCNEEQTLEAKIGGFLSKVREEVG 778

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
                  L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHF K+
Sbjct: 779  DVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKN 838

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
               P+S+GFV NS+  GL+P EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  
Sbjct: 839  SKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSC 898

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD--EENWNP 916
            +YD TVR S   ++QF YG DG+D + +E      +   +S +D A+    D  +E   P
Sbjct: 899  QYDNTVRTSANGIVQFTYGGDGLDPLEMEGNA-QPVNFNRS-WDHAYNITFDNKDEGLLP 956

Query: 917  NYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNA 976
              +++   + L+ ++E    +D     ++A+    A E     D+      +L+  I N 
Sbjct: 957  YAIMKTANEVLRPLEERLIRYDNSGCLVKAEDKDKA-EYVDQYDAERDFYRSLREYI-NL 1014

Query: 977  QKTFKVDPRRPSDMHPMEVVEAVDKLQERL---KVVPGEDPLSVEAQKNATLFFNILLRS 1033
            + T   + RR   M   E++EA +K+ E +   + VP    +SV                
Sbjct: 1015 KATALANLRRSRGMS--ELLEAPEKILEGVNPDENVPDNIKISVS--------------- 1057

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTF 1093
                    + +R++ ++ +  +     ++ ++ + PG  IG + AQSIGEP TQMTL TF
Sbjct: 1058 --------QLYRISEKSVKKFLEIALFKYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTF 1109

Query: 1094 HYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCALEYTTL 1152
            H+AGV++ NVTLGVPR++EIIN +K I TP ++  L   VN   ER A+ V+  +E T L
Sbjct: 1110 HFAGVASMNVTLGVPRIKEIINASKVISTPIINAVL---VNDNDERAARVVKGRVEKTLL 1166

Query: 1153 RSVTEATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVD 1211
              V    +  Y  +     +  D+  + K   E+  EDIA        L+I+ +   ++ 
Sbjct: 1167 SDVAYYVQDVYKDNLSFIQVRIDLATIDKLQLELTIEDIAVAITRASKLKIQASDVNIIG 1226

Query: 1212 K-KLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI----RIMNDEAPKGELNDESAED 1266
            K ++++    +    +    ++    + + + +  R+    R + D   KG L D S   
Sbjct: 1227 KDRIAINVFPDGYKAK---SISTSAKEPSENDVFYRMQQLRRAIPDVVVKG-LPDISRA- 1281

Query: 1267 DVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDE 1326
               +  I  N   E+ + G  L  VMC + V   +TT+NH++E+  VLGIEA R +++ E
Sbjct: 1282 ---VINIRDNGKRELLVEGYGLRDVMCTDGVIGSKTTTNHVLEVFSVLGIEAARYSIVRE 1338

Query: 1327 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1386
            +   +S  G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T D L D
Sbjct: 1339 INYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFD 1398

Query: 1387 AAVFAESDYLRGVTENIMLGQLAPIGTG 1414
            AA + + D + GV+E I+LGQ   IGTG
Sbjct: 1399 AAFYMKKDAVEGVSECIILGQTMSIGTG 1426


>gi|367041111|ref|XP_003650936.1| hypothetical protein THITE_2110899 [Thielavia terrestris NRRL 8126]
 gi|346998197|gb|AEO64600.1| hypothetical protein THITE_2110899 [Thielavia terrestris NRRL 8126]
          Length = 1547

 Score =  763 bits (1971), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/1528 (33%), Positives = 778/1528 (50%), Gaps = 183/1528 (11%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHG---ETTERGKPKPGGLSDPRLGT--IDRKMKCET 68
            + + ++FGI S  +I    V+++      +   R    P G  DPRLGT   +R+ KC T
Sbjct: 21   RFKALKFGIQSHQDIVSQGVLEVSDNLLYDVENRRTAFPHGPLDPRLGTSSTNRENKCST 80

Query: 69   CTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE-DDHKFKQALK- 126
            C   + ECPGHFGH+ L  P+FHIG++K + + ++++C +C+++L  E +  +F + L+ 
Sbjct: 81   CHLGLQECPGHFGHVRLPLPVFHIGYLKYIQATLQNICKDCARVLLQEPERRQFLKELRR 140

Query: 127  --IRNPKNR--LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQP---KLT 179
              I N +    LK+I + C+    C               P       CG+ Q    KL+
Sbjct: 141  PGIDNLRRSAILKRINEQCRKAKTC---------------PY------CGSIQGVIRKLS 179

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLP--------EPVERKQTLTAE---------------R 216
            +  MK++ +  A   K+  Q+++            E+ +  T E               +
Sbjct: 180  V--MKLVHDKYAAYNKSTAQKKIAPQSKLEFDASFEQAKKYTPELEKHTRKAMDDLNPLK 237

Query: 217  VLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLA 267
            VL + K+IS  DC+ LGL+P   RP+  + Q +P PP  +RPS         DD+T +L+
Sbjct: 238  VLNLFKQISPSDCEFLGLDPAEGRPEMFLWQYVPAPPICIRPSVAQENASNEDDITSKLS 297

Query: 268  MIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPG--QPRATQRSGRPIKSI 325
             II +  +LR   + G    +I E  + LQ  +  Y ++++PG  QP      G+PI+  
Sbjct: 298  EIILYAGHLRESMKKGVALPVIMEQWEFLQLQVGMYVNSDVPGLYQPGF----GKPIRGF 353

Query: 326  CSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNI 385
            C RLK K+GR RGNL GKRVDFS RTVI+PDP ++I+Q+ VP  +A NLTYPE V   NI
Sbjct: 354  CQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIEQVAVPQLVAKNLTYPERVNHANI 413

Query: 386  ERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRY----LKKSSDHHLELGYKVERHLND 441
            E+L+E V  GPH  PG  G   II+ DG + +L+     L++    +LE G  VERHL D
Sbjct: 414  EKLRERVINGPHIWPGAQG---IIKKDGSKYNLKIGKESLRERHADNLEFGDVVERHLED 470

Query: 442  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 501
             D VLFNRQPSLHK+SIM H +K+ P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E R
Sbjct: 471  DDIVLFNRQPSLHKLSIMSHLVKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEAR 530

Query: 502  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL--MWWEDF 559
            AE + LM V   +++P++  P++   QD +     ++ +D F ++  F  I   M   D 
Sbjct: 531  AEAINLMGVKHNLITPKNGEPIIAATQDFITAAFLLSSKDRFFDRTTFTYICTQMLLGDT 590

Query: 560  DGKVPQPTILKPRPLWTGKQVFNLII------PKQINL-FRTAAWHADNDKGI--LTAGD 610
              ++P P I+KPR LWTGKQ+FN+++      P  +NL  +  A+    D  I  +   D
Sbjct: 591  YLELPPPAIIKPRALWTGKQIFNVMMRPNKESPVLVNLDAKNKAFQKKQDGEIPDMDIDD 650

Query: 611  TLVRIEKGELLSGTLCKKTLGTST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
              + +   E++ G + K T+G     S+ +VI  + GP+ A   +     L    L    
Sbjct: 651  AFLVVRNSEVMCGRMDKSTVGGGKKNSVFYVILRDFGPEYAAAAMNRLAKLSARTLTLRG 710

Query: 670  FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
            FSIG+GD              +  A     +LI+  +   LE  PG  + E+ EN ++ +
Sbjct: 711  FSIGVGDVWPSDSLTAHKASLVEDAYKKCDDLIETYRQGKLEKAPGCNLEETLENIISGI 770

Query: 730  LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
            L+  R +AG+    +LS++N    M  +GSKGS IN++QM ACVGQQ + GKR+P GF D
Sbjct: 771  LSKVRQQAGNYCVDNLSKNNAPLIMAKSGSKGSEINVAQMVACVGQQIISGKRVPDGFQD 830

Query: 790  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 849
            R+LPHF K+   P S+GFV NS+  GL P EF FHA+ GREGL+DTAVKT+ETGY+ RRL
Sbjct: 831  RSLPHFHKNARQPPSKGFVRNSFYTGLVPTEFLFHAISGREGLVDTAVKTAETGYMSRRL 890

Query: 850  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF-- 907
            +K++ED+  +YD TVR S G ++QF YG D +D V +E         K  +F + +    
Sbjct: 891  MKSLEDLSAQYDDTVRTSEGGIVQFQYGADRLDPVDMEGDA------KPVDFARTWNHAQ 944

Query: 908  EMDEENWNPNYMLQEYIDDLKTIKEL-------RDVFDAEVQKLEAD--RYQLATEIATS 958
             +   N  P+ +  E  +  KTI +        R +   E  K + D  R  +  ++  +
Sbjct: 945  SITWSNSEPSLLPWEVQELCKTILDAERKKYVRRHLVTNEEIKYDDDTIRQSMDHDVLIA 1004

Query: 959  GDSSWPLPVNLKRL----------IWNAQKTFKVDPRRPSDMHPMEVVEAVDK------- 1001
             D    + V L  +          +  A+K   +DP  P     M   EA+DK       
Sbjct: 1005 IDEHESVRVFLNTIHDYVRERALKLAKARKAVGLDPCIPPTDQRMR--EAIDKWEPATKG 1062

Query: 1002 -------------------LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLK 1042
                               L++  + V GED     A+  A    +   R    S+R L+
Sbjct: 1063 GSETGMHALGEPRDPSEYVLKDLRRKVDGEDEFGDAARAKAQAHVD---RVAKVSERTLR 1119

Query: 1043 EHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKN 1102
                        I     ++ ++ V PG  +G V AQSIGEP TQMTL TFH+AGV+  +
Sbjct: 1120 T----------FIQMCLHKYRRARVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMS 1169

Query: 1103 VTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVW 1162
            +T GVPR++EIIN +K I TP ++  L+   +    R   V+  +E T +  V    +  
Sbjct: 1170 ITQGVPRIKEIINASKLISTPVITCKLENKWDIKAARV--VKGRIEKTYISDVISYIDDE 1227

Query: 1163 YDPDPMGTIIEEDVEFVKSY-YEMPDEDIAPE---------KISPWLLRIELNREMMV-- 1210
            + PD    +++ DV+ +      +  +DIA           K+ P  LRI  NR  +V  
Sbjct: 1228 WLPDVAKIVLQVDVQALSDMQLGITTKDIADAIVRAKKLKLKVEPEDLRISANRVEVVVR 1287

Query: 1211 ----DKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAED 1266
                D   +  A   +              D++A    LR+  +    P   ++      
Sbjct: 1288 NTWQDVTAARKAARARAAAIEKGQHVSSATDESAADFQLRVNFLKRMLPHVAISGYPEAA 1347

Query: 1267 DVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDE 1326
               ++  ++N   E+ + G  L A M  E V   +  +N ++E  +VLGIEA R  +  E
Sbjct: 1348 RAIIQTSDANE-HEVLVEGYGLRACMTTEGVIGTQCVTNSVMECRDVLGIEAARTTIAKE 1406

Query: 1327 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1386
            +  V+S     ++ RH+ +L D MTY+G ++ ITR G+ +     +   SFE+T D L D
Sbjct: 1407 IGQVMS--SMSIDPRHMELLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTPDHLFD 1464

Query: 1387 AAVFAESDYLRGVTENIMLGQLAPIGTG 1414
            AA   + D ++GV+E I++GQ   IGTG
Sbjct: 1465 AAAGMKKDRIQGVSECIIMGQTMSIGTG 1492


>gi|407917443|gb|EKG10751.1| RNA polymerase alpha subunit [Macrophomina phaseolina MS6]
          Length = 1466

 Score =  762 bits (1968), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/1502 (34%), Positives = 762/1502 (50%), Gaps = 184/1502 (12%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEH-------GETTERGKPKPGGLSDPRLGTIDRKMKC 66
            ++  +QFGILS  +I   +V+++         G    R   K G + D R+G   +   C
Sbjct: 18   RITELQFGILSNQDIVNQAVIEVSDRHVYDAVGNGPNRTVTKHGPM-DGRMGISSKSAAC 76

Query: 67   ETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALK 126
            ETC  ++  C GHFGH++LA P FHIG++K ++ ++  +C  CS IL DE       A +
Sbjct: 77   ETCGEDLKSCNGHFGHVKLALPAFHIGYLKMIIEVLHCICKECSNILLDE-------ASR 129

Query: 127  IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQ-PKLTIEG--M 183
             R  K+  +  LD+ +    C+           GE    K    CGA   P   + G  +
Sbjct: 130  QRYTKSLRRPDLDSLQRTAICK--------KISGECRKVKKCPHCGATNGPVRKVAGHPL 181

Query: 184  KMI-AEYKAQRKKNDDQEQLP-------EPVERKQTLTAE---------------RVLGV 220
            K++  ++ A  K N  ++++P       +  E  +   AE               RVL +
Sbjct: 182  KIVHLKFDAYNKSNAKRKEMPRGKPEFDKSFEIAKQGNAELDKHIRKAVDDMNPLRVLNL 241

Query: 221  LKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIR 271
             KRI   DC LLG++    RP+  I Q +P PP  +RPS         DD+T++L  I++
Sbjct: 242  FKRIKTTDCPLLGMSK--GRPEMFIWQYVPAPPVTIRPSVAQEAATTEDDITNKLGDIVQ 299

Query: 272  HNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKA 331
             +  +R     G P   I E    LQ  IA Y ++++PG     Q  G+ I+  C RLK 
Sbjct: 300  ISSLIRAGLAKGLPVQTIMEQWDFLQLQIALYVNSDVPGLQ--AQGVGKHIRGFCQRLKG 357

Query: 332  KEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKEL 391
            K+GR RGNL GKRVDFS RTVI PDP ++I+++ VP  +A N+TYPE V+ YN+E+L+  
Sbjct: 358  KQGRFRGNLSGKRVDFSGRTVIGPDPNLSIEEVAVPERVAKNMTYPEKVSRYNLEKLRGC 417

Query: 392  VEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKK-----SSDHHLELGYKVERHLNDGDFVL 446
            V  G    P   GA +I++ DG+R+ L  L+K      +   L++G  VERH+ DGD VL
Sbjct: 418  VRRGKFKHP---GANFIVKQDGRRMVLEVLQKLGKLEQTAEQLQIGDVVERHIEDGDIVL 474

Query: 447  FNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLE 506
            FNRQPSLHK+SI+ H+ K+ P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E R E +E
Sbjct: 475  FNRQPSLHKLSILSHKAKVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAIE 534

Query: 507  LMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG----- 561
            LM V   + +P++  P++  +QD +      T++D F+++  F   LM    F+G     
Sbjct: 535  LMGVKNNLATPKNGTPIIAAIQDFITCAFLTTRKDLFLDRKTFA--LMCSYMFNGDSVRD 592

Query: 562  ---------KVPQPTILKPRPLWTGKQVFNLII------PKQINLFRTAAWHADNDKGIL 606
                      +P P ILKP+ LWTGKQV+N+++         +NL      +  N K  L
Sbjct: 593  PETGKYHKIDLPPPVILKPQALWTGKQVWNVLMRPYKASKVLVNLDAACKQYKGNKKD-L 651

Query: 607  TAGDTLVRIEKGELLSGTLCKKTLGTS-TGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL 665
               D  + +   E++ G + K T+G     S+ +V+  + GPD A + +     L   WL
Sbjct: 652  NEDDAWLVVRNSEVMCGVMDKSTVGDGKKDSVFYVMMRDFGPDYAVQAMNRLAKLSARWL 711

Query: 666  LQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENK 725
                FSIG+ D    +K +E     I  A    K +++      LE + G     + ENK
Sbjct: 712  TNRGFSIGVSDVTPGSKLVERKTKLIQDAYIQAKKIVELYNTGKLERDAGCDEELTMENK 771

Query: 726  VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPF 785
            ++ VLN  R EAG      L+  N+   M   GSKGS IN++QM ACVGQQ + G R+  
Sbjct: 772  ISGVLNKVRAEAGDICFSELTNWNSPLIMAKCGSKGSNINVAQMVACVGQQIIGGARVQD 831

Query: 786  GFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYI 845
            GF DRTLPHF K    P+++GFV NS+  GLTP EF FHAM GREGL+DTAVKT+ETGY+
Sbjct: 832  GFQDRTLPHFAKGGRLPDAKGFVANSFYSGLTPYEFIFHAMSGREGLVDTAVKTAETGYM 891

Query: 846  QRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF 905
             RRL+K++ED+  +YD TVRNS   ++QF YG+D +D V +E +      ++  +  +  
Sbjct: 892  SRRLMKSLEDLSAQYDDTVRNSASQIVQFRYGDDNLDPVDMEGKAKPVNFVRSFDHARTT 951

Query: 906  RFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDA--EVQKLEADRY-QLATEIA-TSGDS 961
             ++ +E    P+              E+RD+  A  + ++ E  RY +   E+  T  D 
Sbjct: 952  TWDNEERGLLPD--------------EIRDIARARLDAKRREIQRYSETGQELQFTVNDP 997

Query: 962  SWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQK 1021
                    KR  +N  + F    ++  D         V++L  R   V  E+    EA  
Sbjct: 998  GMVDQKESKRNFYNEVQDFIF--KKAGD---------VERLTTRFVEVQNENKQKGEAIA 1046

Query: 1022 NATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSI 1081
            +   F NI          V    +++R   E+ +    ++  QS V PG  +G V AQSI
Sbjct: 1047 DDVGFSNI----------VDGVSKISRRCLEYFLDLCLTKHAQSHVQPGHAVGAVGAQSI 1096

Query: 1082 GEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-A 1140
            GEP TQMTL TFH+AGV+  ++T GVPR++EIIN +K I TP ++  L+   N    R A
Sbjct: 1097 GEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKTISTPIITCELE---NKKDIRAA 1153

Query: 1141 KNVQCALEYTTLRSVTEATE-VWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWL 1199
            + V+  +E T L+ +T   E VWYD                +Y  M  +    E +   L
Sbjct: 1154 RLVKARVEKTYLKDITHYIEDVWYDDG--------------NYLNMRIDWETVEALGLEL 1199

Query: 1200 LRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN-------------------- 1239
             + +L   ++   KL + A   +I + F + L     D N                    
Sbjct: 1200 TKNDLELAILKAPKLKIGADGGRI-EFFKNHLRIYVPDVNDPSNEKQRKAAATRSGASKA 1258

Query: 1240 ----ADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMAL--RGVNLLAVMC 1293
                 D    RI+++    P+  +          +KK E N   +++L   G  L  +M 
Sbjct: 1259 KNSTEDAYFARIQLLKRAIPEIAIKGYPEATRAIIKK-EDNADEDISLIVEGYGLKLIMA 1317

Query: 1294 HEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI-SFDGSYVNYRHLAILCDTMTY 1352
               +   +  SN ++E   VLGIEA R  ++ E+  V+ S D   ++ RH+ +L D MTY
Sbjct: 1318 TPGIRGTQCYSNSVLECFAVLGIEAARTTIIKEIASVMGSMD---IDPRHMQLLADVMTY 1374

Query: 1353 RGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIG 1412
            +G ++ ITR G+ +     +   SFE+T D L +A    +SD ++GV+E I+LGQ   IG
Sbjct: 1375 KGDILGITRFGLAKMRDSVLQLASFEKTPDHLFEAGYRGKSDGVQGVSECIILGQSMGIG 1434

Query: 1413 TG 1414
            TG
Sbjct: 1435 TG 1436


>gi|406607118|emb|CCH41506.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
          Length = 1457

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1470 (34%), Positives = 774/1470 (52%), Gaps = 128/1470 (8%)

Query: 15   VRMVQFGILSPDEIRQMSVVQI---EHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTA 71
            ++ ++FG LS  +I   S V++   +  +  E  KPK  G  D  +G      +C  C  
Sbjct: 13   IKGIEFGALSEKDIVAQSEVEVSTRDLFDLEEGRKPKKNGALDSHMGISSNSSECSVCKG 72

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP- 130
            N+A C GHFGHL+L  P+FH+G+ K  + +++S+C +C  +L DE+  K +  L++R P 
Sbjct: 73   NLATCHGHFGHLKLPLPVFHVGYFKATIQVLQSICKSCGSMLLDEE-AKRQFRLELRRPG 131

Query: 131  ------KNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
                     LKKILD CK + +C     +D    +G   +KK   G G    K+  +  +
Sbjct: 132  IDNLRRMGILKKILDQCKKQRRC-----LDCGAVNG--VVKKAAAGSGTASLKIVHDTFR 184

Query: 185  MIAEY----KAQRKKNDDQEQLPEP-VER-----KQTLTAERVLGVLKRISDEDCQLLGL 234
             I +     K +  K+ +      P +ER        L   +VL + K++  EDC+L+G+
Sbjct: 185  WIGKKPTIEKGEWDKDIETAVHNNPDIERFAKRCMDDLNPLKVLNLFKQVKPEDCELMGI 244

Query: 235  NP-KYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERN 282
            +  +  RP+  I + LP PP  +RPS           DDLT +L  I+  +  +R     
Sbjct: 245  DSGRGGRPETYIWRYLPAPPVCIRPSVMMSDSPTSNEDDLTVKLTEIVWTSSLIRAGIEK 304

Query: 283  GAPAHIISEFAQLLQFHIATYFDNE------LPGQPRATQRSGRPIKSICSRLKAKEGRI 336
            G   + + E    LQ  +A Y +++      LPG   A + + +PI+ +C RLK K+GR 
Sbjct: 305  GISINNLMEQWDYLQLSVAMYINSDAASPAMLPGASAAAKSA-KPIRGLCQRLKGKQGRF 363

Query: 337  RGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGP 396
            RGNL GKRVDFS RTVI+PDP + ID++ VP  +A  LTYPET T YN E+L+ L+  GP
Sbjct: 364  RGNLSGKRVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPETCTRYNKEKLQRLILNGP 423

Query: 397  HPPPGKTGAKYIIR-DDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLH 454
               PG   A Y+++ ++  R +LRY  ++    +L+ G  VERHL DGD VLFNRQPSLH
Sbjct: 424  TEHPG---ANYLLKKNEDARRNLRYGDRNKLAKNLQYGDVVERHLEDGDVVLFNRQPSLH 480

Query: 455  KMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCI 514
            ++SI+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   +
Sbjct: 481  RLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNL 540

Query: 515  VSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK--VPQPTILKPR 572
            ++P+S  P++   QD + G   I+ +D+F ++  F  +L    D D +  +P P I KP 
Sbjct: 541  LTPKSGEPIIAATQDFITGSYLISHKDSFFDRATFTQLLSMMSDGDLQFDLPPPAIHKPV 600

Query: 573  PLWTGKQVFNLII------PKQINLFRTAAWHADNDKGI---LTAGDTLVRIEKGELLSG 623
             +WTGKQVF+L+I      P  INL           KG+   ++  D  V I   ++LSG
Sbjct: 601  YMWTGKQVFSLLIKPNKKSPVVINLDAKNKAFTPPAKGLPMEMSPNDGFVIIRGSQILSG 660

Query: 624  TLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAK 682
             + K TLG     S+ + I  + GP  A   +     L   +L    FSIGI D      
Sbjct: 661  VMDKSTLGDGKKHSVFYTILRDYGPKEAATAMNRMAKLCARFLGNRGFSIGISDVTPGVA 720

Query: 683  TMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQ 742
               T  + +  A      LIK   +  LE +PG    ++ E K+  +L+  R+E G    
Sbjct: 721  LKNTKEEMVEAAYAKCDELIKLYSEGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCI 780

Query: 743  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGP 802
              L  SN    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHF K+   P
Sbjct: 781  NELDSSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTP 840

Query: 803  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 862
            +S+GFV NS+  GL+P EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD 
Sbjct: 841  QSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYDN 900

Query: 863  TVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF------RFEMDEENWNP 916
            TVR S   ++QF YG DG+D   +E         K   F++ +        +++E +  P
Sbjct: 901  TVRTSSNGIVQFTYGGDGLDPFDMEGDA------KPVNFNRTWDHSYNVTLDVNERSLLP 954

Query: 917  NYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNA 976
              +++   + L+ +++    +D    +LE    +   E     D+        KR  +N+
Sbjct: 955  YEVIEVVEEVLQPLEKKLIRYDNLGNQLEGKDAE-KIEFIDQNDA--------KRGFYNS 1005

Query: 977  QKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFA 1036
             + F       S    +  V    KL   L+  P ++   ++  + +         S  A
Sbjct: 1006 IREF-----FASKAARLARVREQKKLHGYLE-KPADESAQMDLDEGS---------SEAA 1050

Query: 1037 SKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYA 1096
               V +  ++T++  +  +     ++ ++ V PG  +G +AA SIGEP TQMTL TFH+A
Sbjct: 1051 LTAVNQLAKITKKCVKKFLDITLIKYSRAQVEPGTAVGAIAAHSIGEPGTQMTLKTFHFA 1110

Query: 1097 GVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCALEYTTLRSV 1155
            GV++ NVTLGVPR++EIIN +K I TP ++  L   VN   ER A+ V+  +E T L  +
Sbjct: 1111 GVASMNVTLGVPRIKEIINASKVISTPIINAVL---VNDDDERAARVVKGRVEKTLLSDI 1167

Query: 1156 TEATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRI------ELNREM 1208
                +  Y  D     ++ D++ + K   E+  +DIA        L+I       + R  
Sbjct: 1168 VYYIQDVYKDDMSYIQVKVDLKTIEKLQLELTMDDIAVAISRAPKLKIPGGDVSVVGRNK 1227

Query: 1209 MVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAP----KGELNDESA 1264
            +        A A+ ++    + L         ++L  R++ +    P    KG  +   A
Sbjct: 1228 ININVFPEGARAKSVSTSAKEPL--------ENELFFRMQHLRRALPGVTVKGFPDIARA 1279

Query: 1265 EDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                 +  +  +   E+ + G  L  VMC + V   +T +NH++E+ +VLGIEA R +++
Sbjct: 1280 -----VINVRDDGKKELLVEGYGLRDVMCTDGVIGTKTKTNHILEVWQVLGIEAARGSII 1334

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
            +E+   +S  G  V+ RH+ +L D M+Y+G ++ ITR G+++     +   SFE+T D L
Sbjct: 1335 NEIDYTMSNHGMSVDPRHIQLLGDVMSYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHL 1394

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
             DA+ + +SD + GV+E I+LGQ   IGTG
Sbjct: 1395 FDASFYMKSDAVEGVSECIILGQTMAIGTG 1424


>gi|384491453|gb|EIE82649.1| RNA polymerase I [Rhizopus delemar RA 99-880]
          Length = 651

 Score =  761 bits (1966), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/658 (56%), Positives = 482/658 (73%), Gaps = 26/658 (3%)

Query: 31  MSVVQIEHGETTERG--KPKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKP 88
           MSV +IE  E  E G  KP+ GGL DPR+GTIDR  KC+TC   MAECPGHFGH++LAKP
Sbjct: 1   MSVSKIEFPELYEEGTQKPRVGGLLDPRMGTIDRNYKCQTCGEGMAECPGHFGHIDLAKP 60

Query: 89  MFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCE 148
           +FHIGF+  +  I+  VCF+CSK+  D+ + +F++A +I + K RL+ + D  K K  CE
Sbjct: 61  VFHIGFLTKIKKILECVCFHCSKLKVDQSNPRFERARRISDRKVRLRAVWDIAKTKMTCE 120

Query: 149 GGDEIDVPGQD---GEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEP 205
           GGDE D   +         K N GGCG +QP +  +G+K+ A++++     DD       
Sbjct: 121 GGDEEDGLEEKEEFNSGKRKSNHGGCGYKQPLIRKDGLKLYAQFRSS--PGDDSGN---- 174

Query: 206 VERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS------ 259
            E KQ LTA +VL +LK I D+D + +GL+ +YARP+WM++ VLP+PPP VRPS      
Sbjct: 175 -EGKQQLTAAKVLQILKNIPDQDIRDMGLSEEYARPEWMMITVLPVPPPQVRPSIQMDGT 233

Query: 260 ----DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRAT 315
               DDLTH+L+ I++ N N++R E  GAP H+++EF QLLQFHIATY DN++ GQP+A 
Sbjct: 234 SKGEDDLTHKLSDILKANANVKRCESEGAPVHVVNEFEQLLQFHIATYMDNDIAGQPQAL 293

Query: 316 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 375
           Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSARTVIT DP + +DQ+GVP SIA NLT
Sbjct: 294 QKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLALDQVGVPRSIARNLT 353

Query: 376 YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 435
           YPE VTPYNI++L++LV  GP   PG   AKY+IRD+G+R+DLRY K++ +  L+ GY+V
Sbjct: 354 YPEIVTPYNIDKLQQLVRNGPLEHPG---AKYVIRDNGERIDLRYRKRAGEIPLQYGYRV 410

Query: 436 ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 495
           ERH+ND D V+FNRQPSLHKMS+MGHR+K+MPYSTFRLNLSVTSPYNADFDGDEMN+HVP
Sbjct: 411 ERHINDDDVVIFNRQPSLHKMSMMGHRVKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVP 470

Query: 496 QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMW 555
           QS ETRAEV E+ MVPK IVSPQSN+PVMGIVQDTL G RK T RD F+ KD+ MNI+MW
Sbjct: 471 QSLETRAEVTEICMVPKQIVSPQSNKPVMGIVQDTLCGIRKFTLRDCFLSKDLVMNIVMW 530

Query: 556 WEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRI 615
              +DG +P P ILKP+PLW+GKQ+ +++IPK IN     + H D +  +++ GDT V I
Sbjct: 531 VPSWDGYIPPPAILKPKPLWSGKQILSMVIPKGINCQTFHSTHPDGETTLISPGDTRVII 590

Query: 616 EKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF-LGHTQWLVNYWLLQNAFSI 672
           E GEL+ G +CKKT+GT+ G LIH I  E+GP  +++    ++    + WLLQN FSI
Sbjct: 591 ENGELICGIVCKKTVGTANGGLIHTIMNELGPRVSKRLPERYSACCKSTWLLQNGFSI 648


>gi|31127042|gb|AAF26663.2|AF139013_1 RNA polymerase II largest subunit [Tanystylum orbiculare]
          Length = 624

 Score =  761 bits (1964), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/628 (59%), Positives = 471/628 (75%), Gaps = 8/628 (1%)

Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
           SARTVITPDP + IDQ+GVP SIA NLT+PE VTP+NI+++ ELV  G    PG   AKY
Sbjct: 1   SARTVITPDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMHELVHRGNSQYPG---AKY 57

Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
           IIRD+G+R+DLR+  K SD HL+ GY+VERH+ DGD V+FNRQP+LHKMS+MGHR++++P
Sbjct: 58  IIRDNGERVDLRFHPKPSDVHLQYGYRVERHVRDGDVVIFNRQPTLHKMSMMGHRVRVLP 117

Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
           +STFR+NLSVT+PYNADFDGDEMN+HVPQS ETRAE+ +L MVP+ I++PQ+N+PVMGIV
Sbjct: 118 WSTFRMNLSVTTPYNADFDGDEMNLHVPQSLETRAEIEKLAMVPRNIITPQANKPVMGIV 177

Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
           QDTL+  RK+TKRD F+E+D  M +LM+   +DG++ QP ILKP+PLWTGKQ+F+LIIP 
Sbjct: 178 QDTLMAVRKMTKRDVFLERDQMMTLLMFLPTWDGRMMQPAILKPKPLWTGKQLFSLIIPG 237

Query: 588 QINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            +N  RT + H D+ D G    ++ GDT V IE G LLSG +CK+T+G S GSL+H++  
Sbjct: 238 TVNCIRTHSTHPDDEDDGPYKWISPGDTKVLIEHGHLLSGIICKRTVGPSGGSLMHIVML 297

Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
           E+G + A  F GH Q +VN WLL    SIGIGDTIAD +T + I +TI KAKN+V  +I+
Sbjct: 298 ELGHEVAGLFYGHIQTVVNNWLLLEGHSIGIGDTIADHQTYQDIRNTIRKAKNDVIEVIE 357

Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
           +A +  LEP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN KAMV +GSKGS 
Sbjct: 358 KAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEFNNFKAMVVSGSKGSK 417

Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
           INISQ+ ACVGQQNVEGKRIPF F  RTLPHF K    P SRGFVENSYL GLTP EFFF
Sbjct: 418 INISQVIACVGQQNVEGKRIPFVFRKRTLPHFIKXXXXPXSRGFVENSYLSGLTPAEFFF 477

Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
           HAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGT+RNS+  +IQ  YGEDG+D 
Sbjct: 478 HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVTYDGTIRNSVQQLIQLRYGEDGLDG 537

Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
             +ESQ L ++K     F + F+F+   E +      ++ + +L +        + E ++
Sbjct: 538 TMVESQMLPTIKPSDQAFQRMFKFDPSSERYLRRVFTEDVVKELISSGVALGELEKEYER 597

Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKR 971
           L+ DR  L +   T GD+   LP NL R
Sbjct: 598 LKKDREVLRSVFPT-GDNKVVLPCNLNR 624


>gi|169780898|ref|XP_001824913.1| DNA-directed RNA polymerase III subunit RPO31 [Aspergillus oryzae
            RIB40]
 gi|83773653|dbj|BAE63780.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|391867224|gb|EIT76474.1| RNA polymerase III, large subunit [Aspergillus oryzae 3.042]
          Length = 1447

 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/1471 (34%), Positives = 767/1471 (52%), Gaps = 160/1471 (10%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPK---PGGLSDPRLGTIDRKMKCETCTA 71
            ++ ++FG+LS D+I    VV++   +  +  + +     G  D R+G   +   C+TC  
Sbjct: 24   IKELKFGVLSNDDIVSQGVVEVSDRKFFDLDRDRSVVAHGPLDSRMGVSSKTASCQTCGG 83

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIRNP 130
             +  C GHFGH++L  P FH+G+ K V++I++ +C  CS IL  E + + F + ++    
Sbjct: 84   ALQVCNGHFGHVKLVLPSFHVGYFKRVITILQEICKECSHILLPEGERRAFLREMRRPGL 143

Query: 131  KN--RL---KKILDACKNKTKCE-GGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM- 183
             N  RL   K+I + C+    C+  G    V  + G   LK       A     +++ + 
Sbjct: 144  DNLRRLQIAKRINERCRKTRNCDRCGATNGVVKKAGTSALKITHDKFRAFNASTSMKKIP 203

Query: 184  ---KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
               K++ +   +  ++ + E      + +  + A RVL + KRISD DC+LLGL+PK AR
Sbjct: 204  PPSKIVFDRSFEEARSHNPEVEKHHKKAQDDMNALRVLNLFKRISDTDCELLGLDPKEAR 263

Query: 241  PDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
            P+  + Q +P PP  +RPS         DDLT +L  I++ N NL+     GAP   I E
Sbjct: 264  PEMFLWQYIPAPPVCIRPSVGQDASSTEDDLTAKLGDIVQSNINLKNALLKGAPVQTIME 323

Query: 292  FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
                +Q  IA Y ++++PG  +A    G+PI+    RLK K+GR RGNL GKRVDFS RT
Sbjct: 324  CWDYMQLQIAVYINSDVPGLNKADL--GKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRT 381

Query: 352  VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
            VI+PDP + +D++ VP  +A N+TYPE VT YN E+L++ V  G    PG   A Y+++ 
Sbjct: 382  VISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG---ANYLVKK 438

Query: 412  DGQ-RLDLRY--LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
                +  L+Y  L   +D  L+ G  VERH+ DGD VLFNRQPSLHK+SI+ H  K+ P+
Sbjct: 439  GSTFKTFLKYGSLNMIADQ-LQEGDVVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRPH 497

Query: 469  STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
             TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE +ELM V   + +P++  P++  +Q
Sbjct: 498  RTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGEPIISAIQ 557

Query: 529  DTLLGCRKITKRDTFIEKDVFMNILMWW----EDFDGKVPQPTILKPRPLWTGKQVFNLI 584
            D +     ++ +D F ++  F  I ++       FD  +P P +LKP+ LWTGKQVFN++
Sbjct: 558  DFISAAYILSSKDNFFDRRSFTQICLYMLGPETRFD--LPPPAVLKPQMLWTGKQVFNIL 615

Query: 585  I------PKQINLFRTAAWHA---DNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTST- 634
            +      P  +NL      +    D     L   D  + I   E++ G + K T+G+   
Sbjct: 616  MRPNKDDPVMVNLDAACREYKPPKDGRPKDLDPKDGWLVIRNSEVMCGVMDKATIGSGKK 675

Query: 635  GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKA 694
             ++ +V+  + GP AA + +     L   W     FSIGI D     K +++ +D +  A
Sbjct: 676  DNVFYVMLRDFGPPAAAEGMNRLSRLSARWFTNMGFSIGITDVYPSEKLLQSKHDLVETA 735

Query: 695  KNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAM 754
                  +I Q +  +LE  PG   +++ ENK++ +L+  R +AG      LS+ N+   M
Sbjct: 736  YAQCDEVIAQYKAGTLETFPGCDELQTMENKLSGILSKVRQQAGDECIAQLSKYNSPLIM 795

Query: 755  VTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLR 814
             T+GSKGS IN+SQM A VGQQ + G+R+  GF DRTLPHF K+   P S+GFV NS+  
Sbjct: 796  ATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQPPSKGFVRNSFFS 855

Query: 815  GLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQF 874
            GL P EF FHAM GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD TVRNS G ++QF
Sbjct: 856  GLEPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSGHIVQF 915

Query: 875  LYGEDGMDSVWIESQTLDSLKMKKSEFDKAF------RFEMDEENWNPNYML---QEYID 925
             YG+D +D V +E       K K   FD+ F       ++ DE +  P  ++   +E + 
Sbjct: 916  QYGDDKLDPVDMEG------KAKPVHFDRTFIHSEATTYDNDERSLQPAEIMEVCEEMLS 969

Query: 926  DLKTIKELRDVFDAEVQKLE-----ADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTF 980
              +     +D+ D E+  ++      D+++ A +   S      +     +LI    +  
Sbjct: 970  KERAKLVRKDLLDVELGYMDRSNHGVDQFESARDFLES--IQQYVSTKADKLI---SRGG 1024

Query: 981  KVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRV 1040
             +D   PSD    + +    KL E+                         LR TF S  +
Sbjct: 1025 DID---PSDERSQQGLNHTGKLTEK------------------------TLR-TFISACL 1056

Query: 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
            +K                   + ++ V PG  +G V AQSIGEP TQMTL TFH+AGV+ 
Sbjct: 1057 MK-------------------YKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAG 1097

Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE-AT 1159
             ++T GVPR++EIIN +K+I TP +S  L    N    R   V+  +E T LR +T    
Sbjct: 1098 MSITQGVPRIKEIINASKEISTPVVSCELVTKDNVIAARI--VKGRIEKTYLRDITHYVR 1155

Query: 1160 EVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPE-KISPWLLRIELNREMMVDKKLSMAA 1218
            E W   +   T        VK  ++   +D+A E KI   L  I+ +R    D  L    
Sbjct: 1156 ETWTGKEAYIT--------VKINWKTI-QDLALELKIQDILAAIKNHRRFKSD-DLKFRC 1205

Query: 1219 VAEKINQEFDDDLTCIFND-DNADKLIL-RIRIMNDEA-------------PKGELNDES 1263
                I+         I+ D D A KL L +  I    A             P  ++    
Sbjct: 1206 QRSHIH---------IYMDVDPASKLGLSKTEIAATSADPFLRLKHLKRLLPDIQVLGHP 1256

Query: 1264 AEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
                  ++  +++    + + G  L A M    VD  RT++N+++E+ EVLGIEA R  +
Sbjct: 1257 QAYRAIIRTDDTSTTNTLLVEGYGLRACMNTIGVDGLRTSTNNVMEMREVLGIEAARTTI 1316

Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
            + E+  V+      ++ RH+ +L D MTY+G ++ ITR G+ +     +   SFE+T D 
Sbjct: 1317 VREISEVMK--DMDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADH 1374

Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
            L DA     +D + GV+E I++G+   +GTG
Sbjct: 1375 LFDAGGAGRTDLVEGVSECIIMGKTVSLGTG 1405


>gi|365984467|ref|XP_003669066.1| hypothetical protein NDAI_0C01620 [Naumovozyma dairenensis CBS 421]
 gi|343767834|emb|CCD23823.1| hypothetical protein NDAI_0C01620 [Naumovozyma dairenensis CBS 421]
          Length = 1460

 Score =  759 bits (1961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 517/1496 (34%), Positives = 786/1496 (52%), Gaps = 125/1496 (8%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCT 70
            ++  ++F  LS  +I   S V+I   +    E+G+ PK GG  D R+G     ++CETC 
Sbjct: 12   RISGLEFSALSAADIVAQSEVEISSRDLFDLEKGREPKTGGALDKRMGVSSSSLECETCH 71

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKIL-ADEDDHKFKQALK--- 126
             N+A C GHFGH++LA P+FH+G+ K  + I++ +C  CS IL +D+D  +F   L+   
Sbjct: 72   GNLASCHGHFGHIKLALPVFHVGYFKATIQILQGICKTCSAILLSDKDRRQFLNELRRPG 131

Query: 127  IRNPKNR--LKKILDACKNKTKCE-----GGDEIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
            + N +    LKK+LD CK + +C       G         G   LK           K  
Sbjct: 132  VDNLRRMGILKKVLDQCKKQRRCLQCGALNGVVKKAAAGAGSASLKIIHDNFRWVGKKSA 191

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLPEPVER-KQTLTAERVLGVLKRISDEDCQLLGLNP-- 236
             E  K + ++K     + + E+    V+R    L   + L + K+I  EDC+LLG+N   
Sbjct: 192  PEKDKWVGDWKEVLSHHPELERF---VKRCSDDLNPLKTLNLFKQIKPEDCELLGVNSTV 248

Query: 237  KYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAP 285
            K  RP+  I + LP PP  +RPS           DDLT +L  I+  +  ++     G  
Sbjct: 249  KSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGIS 308

Query: 286  AHIISEFAQLLQFHIATYFDNE------LPGQPRATQRSGRPIKSICSRLKAKEGRIRGN 339
             + + E    LQ  +A Y +++      LPG      +  +PI+  C RLK K+GR RGN
Sbjct: 309  INNMMEHWDYLQLTVAMYINSDSVNPAMLPGASSGGGKV-KPIRGFCQRLKGKQGRFRGN 367

Query: 340  LMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 399
            L GKRVDFS RTVI+PDP ++ID++ VP  +A  LT+PE VT YN ++L++L+  GP+  
Sbjct: 368  LSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNRQKLQQLIINGPNVH 427

Query: 400  PGKTGAKYIIRD-DGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 457
            PG   A Y++++ +  R +LRY  +     +L+ G  VERHL DGD VLFNRQPSLH++S
Sbjct: 428  PG---ANYLLKNNEDARRNLRYGDRVKLAKNLQFGDVVERHLEDGDVVLFNRQPSLHRLS 484

Query: 458  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 517
            I+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   +++P
Sbjct: 485  ILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLTP 544

Query: 518  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL--MWWEDFDGKVPQPTILKPRPLW 575
            +S  P++   QD + G   I+ +D+F ++     +L  M   +    +P P I+KP  LW
Sbjct: 545  KSGEPIIAATQDFITGSYLISHKDSFFDRATLTQLLSMMCDANLQFDIPPPAIMKPHYLW 604

Query: 576  TGKQVFNLII------PKQINLF---------RTAAWHADNDKGILTAGDTLVRIEKGEL 620
            TGKQ+F+L+I      P  INL          +T A+  +     ++  D  V I   ++
Sbjct: 605  TGKQLFSLLIKPNKDSPVVINLDAKNKVYIPPKTKAYPNE-----MSRNDGYVIIRGSQI 659

Query: 621  LSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 679
            LSG + K  LG     S+ + I  + GP  A   +     L   +L    FSIGI D   
Sbjct: 660  LSGVMDKSVLGDGKKHSVFYTILRDYGPQEAATAMNRMAKLCARFLGNRGFSIGISDVTP 719

Query: 680  DAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGS 739
                 +   + +  A      LI Q     LE +PG    ++ E K+  +L+  R+E G 
Sbjct: 720  ADDLKQKKEELVEIAYAKCDELIDQFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGD 779

Query: 740  SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDD 799
                 L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHF K+ 
Sbjct: 780  VCINELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFQKNS 839

Query: 800  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
              P+S+GFV NS+  GLTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +
Sbjct: 840  KTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQ 899

Query: 860  YDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF------RFEMDEEN 913
            YD TVR S   ++QF YG DG+D + +E         K   F++++       F  D+  
Sbjct: 900  YDNTVRTSSNGIVQFTYGGDGLDPMEMEGNA------KPVNFNRSWDHATNITFSPDQHG 953

Query: 914  WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLI 973
              P Y + E  + +  +K L D            RY    EI  + DS+    V+     
Sbjct: 954  LLP-YQIMETTNAI--LKPLED---------RLIRYDNLGEIVPNEDSTKAEYVDQ---- 997

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVV--PGED--PLSVEAQKNATLFFNI 1029
            ++A++ F    R   D    +V+ +V K +  L +V  P E+   ++ + Q   T+ ++ 
Sbjct: 998  FDAERDFYKSLRDYMD-EKAKVLGSVRKSRGMLPMVDEPAEELKKMNPDEQVPETIRYS- 1055

Query: 1030 LLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMT 1089
                      V + +++T +  +  +     ++ ++ V PG  +G + AQSIGEP TQMT
Sbjct: 1056 ----------VDQLYKITEDLVKKFLEIALYKYRKARVEPGTAVGAIGAQSIGEPGTQMT 1105

Query: 1090 LNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCALE 1148
            L TFH+AGV++ NVTLGVPR++EIIN +K I TP ++  L   VN   ER A+ V+  +E
Sbjct: 1106 LKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVL---VNENDERAARVVKGRIE 1162

Query: 1149 YTTLRSVTEATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNRE 1207
             T L  V    +  Y  +     +  D+  + K   E+  EDIA        L+I  +  
Sbjct: 1163 KTLLSDVAYYIQDVYKDNLSFIQVRIDLNTIEKLQLELTIEDIAVALTRAPKLKILTSDV 1222

Query: 1208 MMVDK-KLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELND--ESA 1264
             ++ K K+++    E    +    ++    +   + +  R++ +    P   +    E A
Sbjct: 1223 NIIGKDKIAINVFPEGYKAK---SISTAAKEPTENAVFYRMQHLRRALPSIVVKGLPEIA 1279

Query: 1265 EDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
               +    I  +   E+ + G  L  VMC + V   +TT+NH++E+  VLGIEA R +++
Sbjct: 1280 RAVI---NIRDDGKRELLVEGYGLRDVMCTDGVIGMKTTTNHILEVNTVLGIEAARSSIV 1336

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
             E+   +S  G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T D L
Sbjct: 1337 GEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHL 1396

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
             DAA + + D + GV+E I+LGQ   IGTG   +    E+ K +++ + P+  E L
Sbjct: 1397 FDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKVVKGTEIAKESLKPK-PTLFENL 1451


>gi|38232371|gb|AAR15021.1| RNA polymerase II largest subunit [Scutigerella sp. Scu3]
          Length = 624

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/628 (59%), Positives = 467/628 (74%), Gaps = 8/628 (1%)

Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
           SARTVITPDP + IDQ+GVP SIA N+T+PE VTP+N E L  LV  G    PG   AKY
Sbjct: 1   SARTVITPDPNLRIDQVGVPRSIAQNMTFPEIVTPFNFEXLXXLVXRGNSQYPG---AKY 57

Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
           IIR +G+R DLR+  K SD HL++GYKVERH+ DGD ++FNRQP+LHKMS+MGH  +++P
Sbjct: 58  IIRXNGERXDLRFHPKXSDLHLQIGYKVERHVRDGDVIVFNRQPTLHKMSMMGHHXRVLP 117

Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
           +STFR+NLSVT+PYNADFDGDEMN+HVPQS ETRAEV EL +VP+ I++PQSNRPVMGIV
Sbjct: 118 WSTFRMNLSVTTPYNADFDGDEMNLHVPQSNETRAEVEELAIVPRQIITPQSNRPVMGIV 177

Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
           QDTL   RK+TKRD F++KD  MN+LM+   ++GKVPQP ILKP+P WTGKQ+F+LIIP 
Sbjct: 178 QDTLTAVRKMTKRDVFLDKDQMMNLLMFLPTWNGKVPQPCILKPKPQWTGKQIFSLIIPG 237

Query: 588 QINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            +N  RT + H D  D G    ++ GDT V +E G+L+SG LCKKTLGTS GSL+H++  
Sbjct: 238 NVNCIRTHSTHPDEEDDGPYKWISPGDTKVLVEHGDLISGILCKKTLGTSAGSLLHIVVL 297

Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
           E+G + A  F  H Q +VN WLL    SIG+ DTIAD +T   I ++I KAK +V  +I+
Sbjct: 298 ELGFETAGYFYWHIQTVVNNWLLLEGHSIGMCDTIADPQTYVDIQNSIKKAKQDVIEVIE 357

Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
           +A +  LEP PG T+ ++FEN+VN++LN ARD+ G SAQKSLSE NN KAMV +G+KGS 
Sbjct: 358 KAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAQKSLSEFNNFKAMVVSGAKGSK 417

Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
           INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 418 INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFF 477

Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
           HAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGT RNS+  +IQ  YGEDG+D+
Sbjct: 478 HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVSYDGTCRNSVCQLIQLRYGEDGLDA 537

Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
             +E Q+L +LK     F+  FRF++  E        ++ + +L    +     + E + 
Sbjct: 538 NAVEFQSLPTLKPSHKAFEXKFRFDVSNERXLRRXFTEDXVKELTGSAQALSDLEKEWEA 597

Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKR 971
           L+ DR  L + I   GDS   LP NL+R
Sbjct: 598 LQRDREALRS-IFPKGDSKVVLPCNLQR 624


>gi|367030511|ref|XP_003664539.1| hypothetical protein MYCTH_2307483 [Myceliophthora thermophila ATCC
            42464]
 gi|347011809|gb|AEO59294.1| hypothetical protein MYCTH_2307483 [Myceliophthora thermophila ATCC
            42464]
          Length = 1555

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/1524 (33%), Positives = 776/1524 (50%), Gaps = 171/1524 (11%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHG---ETTERGKPKPGGLSDPRLGT--IDRKMKCET 68
            + + ++FGI S  +I    V+++      +   R    P G  DPRLGT   +R+ KC T
Sbjct: 21   RFKALKFGIQSHQDIVSQGVLEVSDNLLYDVENRRTAFPHGPLDPRLGTSSTNRESKCST 80

Query: 69   CTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE-DDHKFKQALK- 126
            C   + ECPGHFGH+ L  P+FHIG++K + + ++++C +C+++L  E +  +F + L+ 
Sbjct: 81   CHLGLQECPGHFGHVRLPLPVFHIGYLKYIQATLQNICKDCARVLLQEPERRQFLKELRR 140

Query: 127  --IRNPKNR--LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQP---KLT 179
              I N +    LKKI + C+    C                       CG+ Q    KL+
Sbjct: 141  PGIDNLRRSAILKKINEQCRKARTCPH---------------------CGSIQGVIRKLS 179

Query: 180  IEGMKMIAEYKAQRKKNDDQEQLP--------EPVERKQTLTAE---------------R 216
            +  MK++ +  +   K+  Q+++P           E+ +  T E               R
Sbjct: 180  V--MKLVHDKFSAYNKSTAQKKIPPESKVEFDASFEQAKKYTPELEKHTKKAMEDLNPLR 237

Query: 217  VLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLA 267
            VL + K+IS  DC+LLGL+P   RP+  + Q +P PP  +RPS         DD+T +L+
Sbjct: 238  VLNLFKQISPTDCELLGLDPSEGRPEMFLWQYVPAPPICIRPSVAQENASNEDDITSKLS 297

Query: 268  MIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPG--QPRATQRSGRPIKSI 325
             II +  +LR   + G    +I E  + LQ  +  Y ++++PG  QP      G+PI+  
Sbjct: 298  EIILYAGHLRESLKKGVALPVIMEQWEFLQLQVGMYVNSDVPGLYQPGF----GKPIRGF 353

Query: 326  CSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNI 385
            C RLK K+GR RGNL GKRVDFS RTVI+PDP ++I+Q+ VP  +A NLTYPE V   NI
Sbjct: 354  CQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLSIEQVAVPQLVAKNLTYPERVNHANI 413

Query: 386  ERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRY----LKKSSDHHLELGYKVERHLND 441
            E+L+E V  GP+  PG  G   II+ DG + +L+     L++     LE G  VERHL D
Sbjct: 414  EKLRERVINGPNIWPGAQG---IIKKDGAKYNLKIGTESLRQKHASSLEFGDVVERHLED 470

Query: 442  GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 501
             D VLFNRQPSLHK+SIM H +K+ P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E R
Sbjct: 471  NDIVLFNRQPSLHKLSIMSHLVKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEAR 530

Query: 502  AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL--MWWEDF 559
            AE + LM V   +++P++  P++   QD +     ++ +D F ++  F  I   M   D 
Sbjct: 531  AEAINLMGVKNNLITPKNGEPIIAATQDFITAAYLLSSKDRFFDRTSFTYICTQMLLGDT 590

Query: 560  DGKVPQPTILKPRPLWTGKQVFNLII------PKQINL-FRTAAWHADNDKGI--LTAGD 610
              ++P P ILKPR LWTGKQ+FN+++      P  +NL  +   +    D  I  +   D
Sbjct: 591  HLELPPPAILKPRALWTGKQIFNVLMRPNKESPVLVNLDAKNKVYKPKKDGQIPDMDIDD 650

Query: 611  TLVRIEKGELLSGTLCKKTLGTST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNA 669
            + + +   E++ G + K T+G     S+ +VI  + GPD A   +     L    L    
Sbjct: 651  SFLVVRNSEVMCGRMDKSTVGGGKKNSVFYVILRDFGPDHAAAAMNRLAKLCARTLTLRG 710

Query: 670  FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQV 729
            FSIG+GD        +     + +A     +LI+  +   LE  PG  + E+ EN ++ +
Sbjct: 711  FSIGVGDVWPSTSLTKHKARLVEEAYKKCDDLIETYRQGKLEKAPGCNLEETLENSISGI 770

Query: 730  LNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD 789
            L+  R +AG     +LS +N    M  +GSKGS IN++QM ACVGQQ + GKR+P GF D
Sbjct: 771  LSKVRQQAGDYCVNNLSNNNAPLIMAKSGSKGSDINVAQMVACVGQQIIGGKRVPDGFQD 830

Query: 790  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRL 849
            R+LPHF K+   P S+GFV NS+  GL P EF FHA+ GREGL+DTAVKT+ETGY+ RRL
Sbjct: 831  RSLPHFHKNARQPPSKGFVRNSFYTGLVPTEFLFHAISGREGLVDTAVKTAETGYMSRRL 890

Query: 850  VKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV--------------WIESQTL---- 891
            +K++ED+  +YD TVR S G ++QF YG D +D V              W  +Q++    
Sbjct: 891  MKSLEDLSTQYDDTVRTSEGGIVQFQYGADRLDPVDMEGDAKPVDFARTWNHAQSITWSN 950

Query: 892  DSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYI-------DDLKTIKELRDVFDAEVQKL 944
                +   E     +  +DEE     Y+ +  +       DD +  K +       + + 
Sbjct: 951  SDTSLLPREIHALCKTILDEE--RKKYVRRHLVTNEEIHYDDDRIAKSMDHDTLIAIDEH 1008

Query: 945  EADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA---VDK 1001
            E+ R  L T      + +  L          A+K   +DP  P D    E +E    V K
Sbjct: 1009 ESARVYLNTIHDFVKERAMKLA--------KARKAVGLDPCLPDDKSMQEALEKWQPVTK 1060

Query: 1002 LQERLKVVPGEDP--------------LSVEAQKN-ATLFFNILLRSTFASKRVLKEHRL 1046
                + V P   P              L  E + + A+    I+  +     RV K    
Sbjct: 1061 DSSSMDVDPPNKPSKPFEYVLKDLRRKLDEENELDEASRQARIMAAAQAHVDRVAKVSER 1120

Query: 1047 TREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLG 1106
            T   F   I     ++ ++ V PG  +G V AQSIGEP TQMTL TFH+AGV+  ++T G
Sbjct: 1121 TLRQF---IQMCLHKYKKARVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQG 1177

Query: 1107 VPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPD 1166
            VPR++EIIN +K I TP ++  L+  V+    R   V+  +E T +  V    +  + PD
Sbjct: 1178 VPRIKEIINASKLISTPVITCELENKVDLKAARV--VKGRIEKTYISDVISYIDDEWLPD 1235

Query: 1167 PMGTIIEEDVEFVKSY-YEMPDEDIAPE---------KISPWLLRIELNR-EMMV----- 1210
                +++ D++ +      +  +DIA           K+ P  LRI  +R E+++     
Sbjct: 1236 VAKIVLQVDLQALSDMQLGITMKDIADAIVRAKKLKLKVEPDDLRIGGDRVEVIIRNTWQ 1295

Query: 1211 DKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFL 1270
            D   +  A   +              D++A    LR+  +    P+  ++         +
Sbjct: 1296 DATAARKAARVRAAAIEKGHFISSTLDESAADFQLRVNFLKRMLPQVAISGYPEASRAII 1355

Query: 1271 KKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
            +  E N   ++ + G  L A M  E V   +  +N ++E  +VLGIEA R  +  E+  V
Sbjct: 1356 QTSEKNE-HKVLVEGYGLRACMTTEGVIGTKCVTNSVMECRDVLGIEAARATIATEIGSV 1414

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            +      ++ RH+ +L D MTY+G ++ ITR G+ +     +   SFE+T D L DAA  
Sbjct: 1415 MR--EMNIDPRHMELLADVMTYKGEILGITRFGLAKMRDSVLQLASFEKTPDHLFDAAAG 1472

Query: 1391 AESDYLRGVTENIMLGQLAPIGTG 1414
             + D ++GV+E I++GQ   IGTG
Sbjct: 1473 MKKDRIQGVSECIIMGQSMSIGTG 1496


>gi|225554972|gb|EEH03266.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
            capsulatus G186AR]
          Length = 1456

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1460 (33%), Positives = 770/1460 (52%), Gaps = 144/1460 (9%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPK---PGGLSDPRLGTIDRKMKCETCTA 71
            ++ ++FG+LS  +I   +VV++   +  +    +   P G  D R+G   +   C+TC  
Sbjct: 24   IKEIKFGVLSTQDIVSQAVVEVSDRKLFDLDNDRAVAPHGPLDGRMGISSKSGTCDTCGG 83

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALK---I 127
             +  C GHFGH++L  P FH+G+ K V+SI++ +C  CS IL  E + + F + L+   I
Sbjct: 84   ALQVCSGHFGHVKLVLPAFHVGYFKRVISILQEICKECSHILLPETERRAFLRELRRPGI 143

Query: 128  RNPKNR--LKKILDACKNKTKCEGGDEID-VPGQDGEEPLKKNKGGCGAQQPKLTIEGM- 183
             N +     KKI + C+    C   + ++ V  + G   LK       A     +++ + 
Sbjct: 144  DNLRRMQIAKKINERCRKTRTCYKCNAVNGVVKKAGTSALKITHEKFRAFNASASVKKIP 203

Query: 184  ---KMIAE--YKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
               K++ +  ++  +K N D ++  +       L   RVL + + +S+EDC+LL LNP+ 
Sbjct: 204  PPSKVVFDKSFEEAKKSNPDIDKHFKKAH--DDLHPLRVLRLFRSVSNEDCELLSLNPEE 261

Query: 239  ARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            ARP+  + Q +P PP  +RPS         DDLT +L  II+ N NL+     GAP   I
Sbjct: 262  ARPEVFLWQYVPAPPVCIRPSVGQEAASTEDDLTAKLGDIIQSNINLKNALIKGAPVQTI 321

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
             E    +Q  +A Y ++++PG  +A    G+PI+  C RLK K+GR RGNL GKRVDFS 
Sbjct: 322  IECWDYMQLQLAVYINSDVPGLQKAD--FGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 379

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVI+PDP + ++++ VP  +A+N+TYPE VT YN E+L++ +  G    PG   A Y++
Sbjct: 380  RTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG---ANYVL 436

Query: 410  RDDGQ-RLDLRYLKKS-SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            +     +++L++   +   + LE G  VERH+ DGD VLFNRQPSLHK+SI+ H  K+ P
Sbjct: 437  KKSQNFKMNLKFGNPNLVANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRP 496

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            + TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE +ELM V   + +P++  P++  +
Sbjct: 497  HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGEPIISAI 556

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK--VPQPTILKPRPLWTGKQVFNLII 585
            QD +     ++ +D F ++  F +I ++  + D +  +P P++LKP+ LWTGKQVFN+++
Sbjct: 557  QDFITAAYLLSSKDIFYDRKTFTHICLYMLESDTRFDLPPPSVLKPQILWTGKQVFNVLM 616

Query: 586  ------PKQINLFRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTST-G 635
                  P  INL   A       KG    L A D  + I   E++ G + K T+G+    
Sbjct: 617  RPNKQSPVLINL-DAACREFKAPKGTPRDLDANDGWLCIRNSEIMCGVMDKSTIGSGKKD 675

Query: 636  SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAK 695
            S+ +V+  + GPD A + +     L   WL    FSIGI D     K +E  +  +  A 
Sbjct: 676  SVFYVMLRDFGPDVASEGMNRLSRLSARWLTNLGFSIGITDVYPGEKLLEEKHHIVEHAY 735

Query: 696  NNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMV 755
                 +I+  ++  LE  PG     + EN ++ +L+  R +AG      LS  N+   M 
Sbjct: 736  AQCDEVIQLFKNGKLEKAPGCDEQMTMENAISGLLSKVRQQAGEICIAELSRWNSPLIMA 795

Query: 756  TAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRG 815
            T+GSKGS IN++QM A VGQQ +  +R+  GF DRTLPHF K    P ++GFV NS+  G
Sbjct: 796  TSGSKGSDINVAQMVALVGQQIIGNQRVQDGFQDRTLPHFPKHARQPPAKGFVRNSFFSG 855

Query: 816  LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 875
            LTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD TVRNS  +++QF 
Sbjct: 856  LTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRNSSSNIVQFQ 915

Query: 876  YGEDGMDSVWIESQTLDSLKMKKSEFDKAF------RFEMDEENWNPNYMLQEYIDDLKT 929
            YG+D +D V +E       + K   FD+ F       F+  ++   P        D++ T
Sbjct: 916  YGDDKLDPVDMEG------RAKPVHFDRTFTHAEVTTFDNSDKGLLP--------DEIIT 961

Query: 930  IKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSD 989
            +   +++   E  KL   R+ L                  K+L +N +    +D      
Sbjct: 962  L--CQNLLAPERAKLA--RFDLLG----------------KKLEYNDRSDHGID------ 995

Query: 990  MHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTRE 1049
                ++  A D LQ        ED +  +A+K  ++      R     K V+   +++  
Sbjct: 996  ----QLESARDFLQSI------EDYVCAKAEKLRSIDSGTKQR----GKGVIHTAKVSTR 1041

Query: 1050 AFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPR 1109
            A    I    +++ ++ V PG  +G V AQSIGEP TQMTL TFH+AGV+  ++T GVPR
Sbjct: 1042 ALTSFITACLTKYKRAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPR 1101

Query: 1110 LREIINVAKKIKTPSLSVFLKPGVNSTKERAKN-VQCALEYTTLRSVTEATEVWYDPDPM 1168
            ++EIIN +K+I TP ++  L   VN    RA   V+  +E T +R +     ++Y     
Sbjct: 1102 IKEIINASKEISTPVITCEL---VNKQDLRAAQIVKGRVEKTFVRDI-----IYY----- 1148

Query: 1169 GTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFD 1228
               IEED    ++Y  +    I    I    L + L   +M  KK      A+   + F 
Sbjct: 1149 ---IEEDWTGNEAYINIK---IDFSTIQNLQLELTLQDILMAIKKHKRFKSADLKFRSFG 1202

Query: 1229 DDLTCIFNDDNADKLIL--------------RIRIMNDEAPKGELNDESAEDDVFLKKIE 1274
              +  IF D    +  L              R++ +    P  ++          ++  E
Sbjct: 1203 SHIH-IFVDQQTTRTALSKTEEAATGADPYIRLKHLKRLIPNIQVIGHPQCARAIIRTDE 1261

Query: 1275 SNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1334
            +N    + + G  L   M  + ++ R T +N+++E   VLGIEA R  ++DE+  V+   
Sbjct: 1262 TNTTNTLLVEGYGLRDCMTTDGINGRHTRTNNIMETRAVLGIEAARTTIVDEIGEVMK-- 1319

Query: 1335 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1394
               ++ RH+ +L D MTY+G ++ ITR G+ +     +   SFE+T D L DA     +D
Sbjct: 1320 DMAIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTD 1379

Query: 1395 YLRGVTENIMLGQLAPIGTG 1414
             + GV+E I++G+   +GTG
Sbjct: 1380 LIEGVSECIIVGKSVSLGTG 1399


>gi|340939410|gb|EGS20032.1| RNA polymerase-like protein [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 1541

 Score =  759 bits (1960), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1492 (33%), Positives = 773/1492 (51%), Gaps = 115/1492 (7%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHG---ETTERGKPKPGGLSDPRLGT--IDRKMKCET 68
            + + ++FGI S  +I    V+++      +        P G  DPR+GT   +R  KC T
Sbjct: 20   RFKALKFGIQSHQDIVSQGVLEVSDNLLYDVENNRTAFPHGPLDPRMGTSSTNRDAKCAT 79

Query: 69   CTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE-DDHKFKQALK- 126
            C   + +CPGHFGH+ L  P+FHIG++K + + ++++C +C+++L  E +  +F + L+ 
Sbjct: 80   CNMGLQDCPGHFGHVRLPLPVFHIGYLKYIQTTLQNICKDCARVLLTEPERRQFLKELRR 139

Query: 127  --IRNPKNR--LKKILDACKNKTKCEGGDEID-VPGQDGEEPLKKNKGGC---GAQQPKL 178
              I N +    LKKI + C+   +C    EI  V  +     L  +K         Q K+
Sbjct: 140  PGIDNLRRAAILKKINEQCRKVKQCPYCGEIQGVIRKLSVMKLVHDKYAAYNKSTAQKKI 199

Query: 179  TIEG-MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
              E  ++  A ++  +K   + E+  +       L   +VL + KRIS  DC+LLGL+P 
Sbjct: 200  APESKVEFDASFENAKKYTPELEKHTKKA--MDDLNPLKVLNLFKRISPTDCELLGLDPT 257

Query: 238  YARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
              RP+  + Q +P PP  +RPS         DD+T +L+ II +  +LR   + G    +
Sbjct: 258  EGRPEMFLWQYIPAPPICIRPSVAQENASNEDDITSKLSEIILYAGHLRESLKKGVSLPV 317

Query: 289  ISEFAQLLQFHIATYFDNELPG--QPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
            I E  + LQ  +  Y ++++PG  QP      G+PI+  C RLK K+GR RGNL GKRVD
Sbjct: 318  IMEQWEFLQLQVGMYVNSDVPGLNQPGF----GKPIRGFCQRLKGKQGRFRGNLSGKRVD 373

Query: 347  FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
            FS RTVI+PDP ++I+Q+ VP  +A NLTYPE V   NIE+L++ V  GP+  PG  G  
Sbjct: 374  FSGRTVISPDPNLSIEQVAVPQLVAKNLTYPERVNHANIEKLRQRVINGPNNWPGAMG-- 431

Query: 407  YIIRDDGQRLDLRY----LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
             II+ DG + +L+     L++   + L+ G  VERHL D D VLFNRQPSLHK+SIM H 
Sbjct: 432  -IIKKDGAKFNLKIGTEALRERHANDLQFGDIVERHLEDNDIVLFNRQPSLHKLSIMSHL 490

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +K+ P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   +++P++  P
Sbjct: 491  VKVRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLITPKNGEP 550

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNIL--MWWEDFDGKVPQPTILKPRPLWTGKQV 580
            ++   QD +     ++ +D F +++ F  I   M   +    +P P I+KPR LWTGKQ+
Sbjct: 551  IIAATQDFITAAYLLSSKDKFFDRETFTYICTQMLLGETHLDLPPPAIMKPRCLWTGKQI 610

Query: 581  FNLII------PKQINLFRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGTLCKKTLG 631
            FN+++      P  +NL       +    G    +   D  + +   E++ G + K T+G
Sbjct: 611  FNVLMRPNKECPVLVNLDAKNKVFSKKKDGHPPDMDIDDAFLVVRNSEVMCGRMDKATVG 670

Query: 632  TST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDT 690
                 S+ +VI  + GPD A   +     L    L    FSIG+GD              
Sbjct: 671  GGKKNSVFYVILRDYGPDYAAAAMNRLAKLCARMLTLRGFSIGVGDVWPSGPLTAHKAKL 730

Query: 691  ISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNN 750
            +  A      LI+  +   LE  PG +M E+ EN ++ +L+  R +AG+    SLS +N 
Sbjct: 731  VEDAYKRCDELIETYRQGKLEKAPGCSMEETLENMISGILSQVRQQAGNYCVDSLSNNNA 790

Query: 751  LKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVEN 810
               M  +GSKGS IN++QM ACVGQQ + GKR+P GF DR+LPHF K+   P S+GFV N
Sbjct: 791  PLIMAKSGSKGSDINVAQMIACVGQQIISGKRVPDGFQDRSLPHFHKNARQPPSKGFVRN 850

Query: 811  SYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD 870
            S+  GLTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD TVR S G+
Sbjct: 851  SFYTGLTPSEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSEGN 910

Query: 871  VIQFLYGEDGMDSV--------------WIESQ--TLDSLK--MKKSEFDKAFRFEMDEE 912
            V+QF YG D +D V              W  +Q  T D+ +  +   E  +  +  +DEE
Sbjct: 911  VVQFQYGADRLDPVDMEGDAKPVDFARTWNHAQSITWDNKEPGLLPREIQRLCKEILDEE 970

Query: 913  NWNPNYMLQEYI--DDLKTIKE-LRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNL 969
                 Y+ +  +  ++LK   E +R   D +V     +   +   + T  D      + L
Sbjct: 971  --RRKYVRRHLVTNEELKYDDETIRTSMDHDVLIAIDEHESVRVYLNTIADYVRSHAMKL 1028

Query: 970  KRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQ-KNATLFFN 1028
             R    A+K+  +DP  P D   M   + ++K Q   K   G D + V+ Q K     F 
Sbjct: 1029 AR----ARKSVGLDPCIPEDDEKMR--KELEKWQPAGK---GLDSMEVDGQTKKPDFVFK 1079

Query: 1029 IL----------LRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAA 1078
             L           R   A   V +  +++       I     ++ ++ V PG  +G V A
Sbjct: 1080 ELHRDLAEDTPEKRQARAQAHVDRVAKVSERTLRQFIQMCLHKYKKARVEPGHAVGAVGA 1139

Query: 1079 QSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKE 1138
            QSIGEP TQMTL TFH+AGV+  ++T GVPR++EIIN +K I TP ++  L+  V+    
Sbjct: 1140 QSIGEPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASKLISTPVITCKLENKVDIKAA 1199

Query: 1139 RAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY-YEMPDEDIA------ 1191
            R   V+  +E T +  V    +  + PD    +++ D++ V      +  +DIA      
Sbjct: 1200 RV--VKARIEKTYISDVISYIDDEWLPDVAKIVLQVDLQAVADMQLGITIKDIADAIVKN 1257

Query: 1192 --------PEKISPWLLRIE-LNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADK 1242
                    P+ +     R+E + R    D   +  A  ++           +  D++   
Sbjct: 1258 KKLKLKVEPDDLRVGHDRVEVIVRNTWTDATAARKAARQRAAAIEKGTAMPLTMDESVAD 1317

Query: 1243 LILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRT 1302
              LR+  +    P+  ++     +   ++  +      + + G  L   M  E V   + 
Sbjct: 1318 FQLRVNFLKRMLPQVAISGYPEANRAIIQTDDKTGEHAVLVEGYGLRQCMTTEGVIGTQC 1377

Query: 1303 TSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRH 1362
             +N ++E  +VLGIEA R  +  E+R V+      ++ RH+ +L D MTY+G ++ ITR 
Sbjct: 1378 VTNSVMECRDVLGIEAARTTIASEIRSVMK--DMNIDPRHMELLADVMTYKGEILGITRF 1435

Query: 1363 GINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
            G+ +     +   SFE+T D L DAA   + D + GV+E I++GQ   IGTG
Sbjct: 1436 GLAKMRDSVLQLASFEKTPDHLFDAAAGMKKDRILGVSECIIMGQSMSIGTG 1487


>gi|254573222|ref|XP_002493720.1| RNA polymerase III subunit C160, part of core enzyme [Komagataella
            pastoris GS115]
 gi|238033519|emb|CAY71541.1| RNA polymerase III subunit C160, part of core enzyme [Komagataella
            pastoris GS115]
          Length = 1460

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1474 (34%), Positives = 767/1474 (52%), Gaps = 124/1474 (8%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGE--TTERGK-PKPGGLSDPRLGTIDRKMKCETCT 70
            +++ ++F  LS D+I   S V++        E+G+ P   G  D R+G   +  +C TC 
Sbjct: 12   RIKGLEFNALSSDQIIAQSEVEVNTRNLFNLEKGRAPAKDGALDTRMGVSSKSGECATCH 71

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP 130
             N+A C GHFGH++LA P+FH+G+ K V+ +++++C +C+ +L DE   K K    +R+P
Sbjct: 72   GNLATCHGHFGHIKLALPVFHVGYFKAVIQVLQTICKSCASVLLDEKT-KRKALEDLRSP 130

Query: 131  KNR-------LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
             N        +K+IL+  K + +C     +     +G   +KK   G G    K+  +  
Sbjct: 131  NNDNLRRMKIIKRILEQAKKQRRC-----LKCGALNG--VVKKASAGAGPASLKVIHDTF 183

Query: 184  KMIAEYKAQRK----KNDDQEQLPEPVERK------QTLTAERVLGVLKRISDEDCQLLG 233
            + I +  +Q K    ++ D   +  P   K        L   +VL + K++   DC+LLG
Sbjct: 184  RWIGKKPSQEKVEWYEDFDNLLINNPDLEKFLKRAYDDLNPLKVLNLFKQVDPSDCELLG 243

Query: 234  LNP-KYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQER 281
            ++  +  RP+  + + +P PP  +RPS           DDLT +L  I+  +  +R    
Sbjct: 244  IDTTRGGRPEMYLWRYVPAPPVCIRPSVLMSDSNTSNEDDLTVKLTEIVWISSLIRAGIE 303

Query: 282  NGAPAHIISEFAQLLQFHIATYFDNE------LPGQP-RATQRSGRPIKSICSRLKAKEG 334
             G   + + E    LQ  +A Y +++      LP     A  +S +PI+  C RLK K+G
Sbjct: 304  KGISINNLIEQWDYLQLSVAMYINSDAGNMSMLPSAAGSAGSKSSKPIRGFCQRLKGKQG 363

Query: 335  RIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEY 394
            R RGNL GKRVDFS RTVI+PDP + ID++ VP  +A  LTYPE VT YN  +L++LV  
Sbjct: 364  RFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPEKVTRYNKHKLQQLVLN 423

Query: 395  GPHPPPGKTGAKYII-RDDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPS 452
            GP   PG   A Y++ RD+  R +LR+  +    + L++G  VERHL DGD VLFNRQPS
Sbjct: 424  GPDVHPG---ANYLLKRDEQNRRNLRFGNRQKLANTLQIGDIVERHLEDGDVVLFNRQPS 480

Query: 453  LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPK 512
            LH++SI+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E R+E + LM V  
Sbjct: 481  LHRLSILSHFAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARSEAMNLMGVKN 540

Query: 513  CIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED----FDGKVPQPTI 568
             +++P+S  P++   QD + G   I+ +DTF ++   + IL    D    FD  +P P+I
Sbjct: 541  NLLTPKSGEPIIAATQDFITGSYLISHKDTFFDRASLVQILASMSDGIEHFD--LPPPSI 598

Query: 569  LKPRPLWTGKQVFNLIIP----KQINLFRTAAWHA-----DNDKGILTAGDTLVRIEKGE 619
             KP  LWTGKQVF+L+I       +N+   A               ++  D  V +   +
Sbjct: 599  FKPAYLWTGKQVFSLLIKPNAKSNVNINLDAKCKTFIPPPAGQPSEMSPNDGFVIVRGSK 658

Query: 620  LLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            +LSG + K  LG     S+ + I  + GP  A   +     L   +L    FSIGI D  
Sbjct: 659  ILSGVMDKSLLGDGKKHSVFYTILRDYGPHEAANAMNRMAKLCARYLGNRGFSIGINDVT 718

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
               +        + +A      LIK      LE +PG    ++ E K+  +L+  R+E G
Sbjct: 719  PGDELSREKECMVEEAYKKCDELIKLFNHGKLETQPGCNEEQTLEAKIGGLLSKVREEVG 778

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
                K L  SN    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHF K+
Sbjct: 779  GVCIKELPSSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFLKN 838

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
               P+S+GFV NS+  GL P EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  
Sbjct: 839  SKTPQSKGFVRNSFYSGLNPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSA 898

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN----- 913
            +YD TVRNS   V+QF YG DG+D + +E      +  K++ +D A+    + E+     
Sbjct: 899  QYDHTVRNSSSGVVQFTYGGDGLDPLDMEGDA-KPVNFKRT-WDHAYNITFNNEDKPLLP 956

Query: 914  WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLI 973
            +    +   ++D LK      D     V   +AD  +   +     D+       LK  +
Sbjct: 957  YEIMKIADSFLDPLKDRLVRLDNLGNIVNPEDADNIEYIDQF----DAERTFYDTLKDFL 1012

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
            +  QKT ++   R S   P         LQE    V  E P       + ++  N L   
Sbjct: 1013 F--QKTKQLAALRESKGFP-------GLLQEPESFVD-ESP-----DHSVSILINQL--- 1054

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTF 1093
                      +R+T  A    +    +++ ++ V PG  +G + AQSIGEP TQMTL TF
Sbjct: 1055 ----------YRITEAAVTKFLELSATKYNRAKVEPGTAVGAIGAQSIGEPGTQMTLKTF 1104

Query: 1094 HYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCALEYTTL 1152
            H+AGV++ NVTLGVPR++EIIN +K I TP ++  L   VN   ER A+ V+  +E T L
Sbjct: 1105 HFAGVASMNVTLGVPRIKEIINASKTISTPIINAVL---VNEDDERAARVVKGRIEKTIL 1161

Query: 1153 RSVTEATEVWYDPDPMGTIIEEDVEFVKSY-YEMPDEDIAPEKISPWLLRIELNREMMVD 1211
            + V    +  Y  +     ++ D+E ++    E+  ++I    +    L++ L   ++  
Sbjct: 1162 QDVVYYIQDVYKENQAYLQVKVDLETIERLQLELNIDEIRLAIVKAPKLKLALEDVIITG 1221

Query: 1212 KKLSMAAVAEKINQEFDDDLTCIFNDDN---ADKLILRI----RIMNDEAPKGELNDESA 1264
            +      V++ +             D +   A++L  R+    R++     KG L D S 
Sbjct: 1222 RNKISVCVSDALLDSISKTAAAKGIDTSSTMANELFFRMQHLKRVLTKVVVKG-LPDISR 1280

Query: 1265 EDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                 +  I  +   E+ + G  L  V+  + V   +T +NH++E+ E LGIEA R  ++
Sbjct: 1281 A----VINIRDDGKKELLVEGYGLKEVIATDGVVGCKTKTNHVLEVYETLGIEAARSCII 1336

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
            +E+   +S  G  V+ RH+ +L D M+Y+G ++ ITR G+ +     +   SFE+T D L
Sbjct: 1337 NEIDYTMSKHGMSVDPRHIQLLGDVMSYKGEVLGITRFGLAKMRDSVLQLASFEKTTDHL 1396

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSL 1418
             DAA + + D + GV+E ++LGQ   IGTG   L
Sbjct: 1397 FDAAFYMKKDLVEGVSECVILGQTMTIGTGAFQL 1430


>gi|255582063|ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis]
 gi|223528524|gb|EEF30548.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
            communis]
          Length = 1383

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 503/1445 (34%), Positives = 755/1445 (52%), Gaps = 137/1445 (9%)

Query: 22   ILSPDEIRQMSVVQIEHGETTERG-KPKPGGLSDPRLG-TIDRKMKCETCTANMAECPGH 79
            ++S  EI + +  Q+  G   +   KP   GL DPRLG    +   CETC A+  ECPGH
Sbjct: 1    MMSGAEILKAAECQVHLGSYYDSTRKPIQAGLLDPRLGPATKQSSACETCGADFHECPGH 60

Query: 80   FGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPK-------N 132
            FG+L L  P+F++G+M  +L I++ +C +CS+IL DE   K     K+RNP+        
Sbjct: 61   FGYLNLVLPVFNVGYMSNILDILKCICKSCSRILYDEKLCK-ADLKKMRNPRIEHLRKSE 119

Query: 133  RLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQ 192
             +KKI+  C + T  +          +G   + K  G   +    +  +  K++  Y  +
Sbjct: 120  LVKKIVKKCSSMTSNKAVKCTRCGDMNG---MVKKAGSVLS----IIHDRAKLVDGYLEE 172

Query: 193  -RKKNDDQEQLPEPVERKQ-TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP 250
             R      ++   P+      LT  +VL + KRI +EDC++LGL   Y RP+ +I+  + 
Sbjct: 173  CRSAIAHTKESRAPISLATYILTPVKVLSLFKRIPEEDCEVLGL---YDRPEKLIITNIA 229

Query: 251  IPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL---LQ 297
            +PP  +RPS          +D+T +L  II+ N +LR +   G  +  ++++      LQ
Sbjct: 230  VPPISIRPSVFTDGLQSNENDITERLKQIIQANASLRMELLEGRMS--VNKYLDSWDGLQ 287

Query: 298  FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
              +A Y ++++   P   +  G+P+     RLK K+GR RGNL GKRV+F+ RTVI+PDP
Sbjct: 288  AAVALYMNSDVR-VPNNVE-VGKPLSGFVQRLKGKQGRFRGNLSGKRVEFTGRTVISPDP 345

Query: 358  TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG--QR 415
             + I ++ +P  +A  L+YPE V+ +NIE+L++LV  GP   PG +  +Y    DG  +R
Sbjct: 346  NLKITEVAIPIHMARILSYPERVSHHNIEKLRQLVSNGPQKYPGASTVRY---PDGSSKR 402

Query: 416  LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
            L   Y +K+    L  G  V+RHL DGD VLFNRQPSLH+MSIM HR +IMP+ T R N 
Sbjct: 403  LIGSY-RKTIAEELTFGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMPWRTLRFNE 461

Query: 476  SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKC-IVSPQSNRPVMGIVQDTLLGC 534
            SV +PYNADFDGDEMNMHVPQ+ E R E L LM V +  + +P++   ++   QD L   
Sbjct: 462  SVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVSQNNLCTPKNGEILVASTQDFLTSS 521

Query: 535  RKITKRDTFIEKDVFMNILMWWEDFDGKV--PQPTILKPRPLWTGKQVFNLI------IP 586
              IT+RDTF ++  F  +  +  D    +  P P ILKP  LWTGKQ+F+++      + 
Sbjct: 522  FLITRRDTFYDRAAFSLMCSYMNDGMDLIDLPTPAILKPIELWTGKQLFSVLLRPNANVR 581

Query: 587  KQINLFRTAAWHADNDKG------ILTAGDTLVRIEKGELLSGTLCKKTLGTST-GSLIH 639
              +NL      ++   KG       +   D  V I   EL+SG L K TLG      L  
Sbjct: 582  VYVNLIVREKIYSKPKKGDKREKETMCPNDGFVYIRNSELISGQLGKATLGNGNKDGLYS 641

Query: 640  VIWEEVGPDAARKFLGHTQWL--VNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNN 697
            ++  +  P AA   +     L  V  W+  + FSIGI D     K ++    TIS     
Sbjct: 642  ILLRDYNPHAAATCMNRLAKLRQVARWIGNHGFSIGIDDVQPGKKLIDGKGKTISNGYQQ 701

Query: 698  VKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTA 757
               LI+Q  +  L  +PG    ++ E+++ + LN  R+EAG    K L   N+   M   
Sbjct: 702  CDKLIEQYNEGKLLLKPGCDATQTLESEITEKLNKLREEAGDVCMKELHWRNSPLIMSQC 761

Query: 758  GSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLT 817
            GSKGS INISQM ACVGQQ+V G+R P GF+DR+LPHF +    P ++GFV NS+  GL 
Sbjct: 762  GSKGSVINISQMVACVGQQSVGGRRAPDGFIDRSLPHFPRKSKTPAAKGFVANSFYSGLM 821

Query: 818  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 877
              EFFFH M GREGL+DTAVKT++TGY+ RRL+K +ED+ ++YD TVRN+ G ++QFLYG
Sbjct: 822  ATEFFFHTMAGREGLVDTAVKTADTGYMSRRLIKGLEDLSIQYDNTVRNASGCIVQFLYG 881

Query: 878  EDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVF 937
            +DG+D   +E +    L + +          + EE++     + + +++L          
Sbjct: 882  DDGLDPASMEGKGGVPLNLDRLFSKVKATCPVREEDYLSPLDISDVVENL---------- 931

Query: 938  DAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVE 997
                         L  ++A  G  S     +L   + +  K                   
Sbjct: 932  ------------LLKHDMALGGICSEAFKKSLTSFLGSHAK------------------- 960

Query: 998  AVDKLQERLKVVPG-EDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIG 1056
               +L+  +K+  G EDP S   Q        I   S    +   K   ++    E  + 
Sbjct: 961  ---RLESMMKLADGVEDPTSENIQTGG-----IRGNSKIIERLAHKIFGVSERQIEVFVK 1012

Query: 1057 EIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINV 1116
               +R+L   V PG  IG + AQSIGEP TQMTL TFH+AGV++ N+T GVPR++EIIN 
Sbjct: 1013 TCINRYLWKRVEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRIKEIING 1072

Query: 1117 AKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDV 1176
            AKKI TP ++  L+   N T  R    +  ++ T L  V ++ ++         +I  D+
Sbjct: 1073 AKKISTPIITAELEQNTNVTAARI--AKGRIQKTVLGQVAKSIKIVMTSRSASVVITLDM 1130

Query: 1177 EFVKSYYEMPDEDIAPEKI--SPWLLRIEL---NREMMVDKKLSMAAVAEKINQEFDDDL 1231
            + +++     D +I  E I  +P   RI+L   + +++  +KL +  + ++    F+   
Sbjct: 1131 KTIQNAQLSLDANIVKEAILRTP---RIKLKPQHIKVLDTRKLEVIPLGDRERVHFE--- 1184

Query: 1232 TCIFNDDNA--DKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLL 1289
              + N  N     ++  I+ +       + +D  A D         NML E    G+ L 
Sbjct: 1185 --LHNLKNLLPSIIVQGIKTVERAVIAQKKHDGKANDQEL---PTYNMLVE----GMGLD 1235

Query: 1290 AVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDT 1349
             VM  E VD  +TTSNH++E+ + LGIEA R+ ++DE+   +   G  ++ RH+ +L D 
Sbjct: 1236 LVMGTEGVDGCKTTSNHVMEVQKFLGIEAARKCIIDEINQTMEHHGMSIDIRHMMLLGDL 1295

Query: 1350 MTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLA 1409
            MT++G ++ ITR GI + D   +M  SFE+T D L  AAVF   D + GV+E I++G   
Sbjct: 1296 MTFKGEVLGITRFGIQKMDKSVLMLASFEKTADHLYHAAVFGRDDKIEGVSECIIMGIPM 1355

Query: 1410 PIGTG 1414
             IGTG
Sbjct: 1356 QIGTG 1360


>gi|38232323|gb|AAR14997.1| RNA polymerase II largest subunit [Neogonodactylus oerstedii]
          Length = 624

 Score =  758 bits (1958), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/628 (59%), Positives = 473/628 (75%), Gaps = 8/628 (1%)

Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
           SARTVIT DP + IDQ+GVP SIA NLTYPE VTP+N+ ++ ELV+ G +  PG   AKY
Sbjct: 1   SARTVITADPNLRIDQVGVPRSIAQNLTYPEIVTPFNMTKMMELVKRGNNQYPG---AKY 57

Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
           I+RD+G R+DLRY  K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR+K++P
Sbjct: 58  IVRDNGARIDLRYHPKPSDLHLQCGYKVERHITDGDLVIFNRQPTLHKMSMMGHRVKVLP 117

Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
           +STFR+NLSVTSPYNADFDGDEMN+HVPQS ETRAE+  L + P+ I++PQ+N+PVMGIV
Sbjct: 118 WSTFRMNLSVTSPYNADFDGDEMNLHVPQSMETRAEIENLHVTPRMIITPQANKPVMGIV 177

Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
           QDTL   RK+TKRD F+EK   M +LM+   +DG++PQP ILKP+P WTGKQ+F+LIIP 
Sbjct: 178 QDTLTAVRKMTKRDVFLEKHEMMTLLMFLPIWDGRMPQPAILKPKPYWTGKQIFSLIIPG 237

Query: 588 QINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            +NL +T + H D+ D G    ++ GDT V +E GEL+ G LCKKTLG+S+GSL+HV W 
Sbjct: 238 NLNLIKTHSTHPDDEDDGPYRWISPGDTKVLVEHGELIMGILCKKTLGSSSGSLLHVAWM 297

Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
           E+G + A +F G+ Q ++N WLL    SIGIGDTI+D  T   I  TI KAK +V  +I 
Sbjct: 298 ELGHEIAGRFYGNIQTVINNWLLLEGHSIGIGDTISDPSTYGVIQATIHKAKEDVIEVIH 357

Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
           +A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV AGSKGS 
Sbjct: 358 KAHNDELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVAGSKGSN 417

Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
           INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EF+F
Sbjct: 418 INISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYF 477

Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
           HAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+  VIQ  YGEDG+  
Sbjct: 478 HAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVSQVIQLRYGEDGLAG 537

Query: 884 VWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
            ++E Q + ++K+ K  F++ ++F+   E +      ++ + +L       +  + E Q+
Sbjct: 538 EFVEFQKMPTVKLSKRRFEEKYKFDPTNERYLRKLYNEDVVKELIGSSHAINTLEQEWQQ 597

Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKR 971
           L+ DR  L   +   GD+S   P NL+R
Sbjct: 598 LQQDREALRL-VFPKGDTSVVQPCNLER 624


>gi|328354455|emb|CCA40852.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
            7435]
          Length = 1460

 Score =  758 bits (1956), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/1474 (34%), Positives = 767/1474 (52%), Gaps = 124/1474 (8%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGE--TTERGK-PKPGGLSDPRLGTIDRKMKCETCT 70
            +++ ++F  LS D+I   S V++        E+G+ P   G  D R+G   +  +C TC 
Sbjct: 12   RIKGLEFNALSSDQIIAQSEVEVNTRNLFNLEKGRAPAKDGALDTRMGVSSKSGECATCH 71

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP 130
             N+A C GHFGH++LA P+FH+G+ K V+ +++++C +C+ +L DE   K K    +R+P
Sbjct: 72   GNLATCHGHFGHIKLALPVFHVGYFKAVIQVLQTICKSCASVLLDEKT-KRKALEDLRSP 130

Query: 131  KNR-------LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
             N        +K+IL+  K + +C     +     +G   +KK   G G    K+  +  
Sbjct: 131  NNDNLRRMKIIKRILEQAKKQRRC-----LKCGALNG--VVKKASAGAGPASLKVIHDTF 183

Query: 184  KMIAEYKAQRK----KNDDQEQLPEPVERK------QTLTAERVLGVLKRISDEDCQLLG 233
            + I +  +Q K    ++ D   +  P   K        L   +VL + K++   DC+LLG
Sbjct: 184  RWIGKKPSQEKVEWYEDFDNLLINNPDLEKFLKRAYDDLNPLKVLNLFKQVDPSDCELLG 243

Query: 234  LNP-KYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQER 281
            ++  +  RP+  + + +P PP  +RPS           DDLT +L  I+  +  +R    
Sbjct: 244  IDTTRGGRPEMYLWRYVPAPPVCIRPSVLMSDSNTSNEDDLTVKLTEIVWISSLIRAGIE 303

Query: 282  NGAPAHIISEFAQLLQFHIATYFDNE------LPGQP-RATQRSGRPIKSICSRLKAKEG 334
             G   + + E    LQ  +A Y +++      LP     A  +S +PI+  C RLK K+G
Sbjct: 304  KGISINNLIEQWDYLQLSVAMYINSDAGNMSMLPSAAGSAGSKSSKPIRGFCQRLKGKQG 363

Query: 335  RIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEY 394
            R RGNL GKRVDFS RTVI+PDP + ID++ VP  +A  LTYPE VT YN  +L++LV  
Sbjct: 364  RFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPEKVTRYNKHKLQQLVLN 423

Query: 395  GPHPPPGKTGAKYII-RDDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPS 452
            GP   PG   A Y++ RD+  R +LR+  +    + L++G  VERHL DGD VLFNRQPS
Sbjct: 424  GPDVHPG---ANYLLKRDEQNRRNLRFGNRQKLANTLQIGDIVERHLEDGDVVLFNRQPS 480

Query: 453  LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPK 512
            LH++SI+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E R+E + LM V  
Sbjct: 481  LHRLSILSHFAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARSEAMNLMGVKN 540

Query: 513  CIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED----FDGKVPQPTI 568
             +++P+S  P++   QD + G   I+ +DTF ++   + IL    D    FD  +P P+I
Sbjct: 541  NLLTPKSGEPIIAATQDFITGSYLISHKDTFFDRASLVQILASMSDGIEHFD--LPPPSI 598

Query: 569  LKPRPLWTGKQVFNLIIP----KQINLFRTAAWHA-----DNDKGILTAGDTLVRIEKGE 619
             KP  LWTGKQVF+L+I       +N+   A               ++  D  V +   +
Sbjct: 599  FKPAYLWTGKQVFSLLIKPNAKSNVNINLDAKCKTFIPPPAGQPSEMSPNDGFVIVRGSK 658

Query: 620  LLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
            +LSG + K  LG     S+ + I  + GP  A   +     L   +L    FSIGI D  
Sbjct: 659  ILSGVMDKSLLGDGKKHSVFYTILRDYGPHEAANAMNRMAKLCARYLGNRGFSIGINDVT 718

Query: 679  ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
               +        + +A      LIK      LE +PG    ++ E K+  +L+  R+E G
Sbjct: 719  PGDELSREKECMVEEAYKKCDELIKLFNHGKLETQPGCNEEQTLEAKIGGLLSKVREEVG 778

Query: 739  SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
                K L  SN    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHF K+
Sbjct: 779  EVCIKELPSSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFLKN 838

Query: 799  DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
               P+S+GFV NS+  GL P EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  
Sbjct: 839  SKTPQSKGFVRNSFYSGLNPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSA 898

Query: 859  KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN----- 913
            +YD TVRNS   V+QF YG DG+D + +E      +  K++ +D A+    + E+     
Sbjct: 899  QYDHTVRNSSSGVVQFTYGGDGLDPLDMEGDA-KPVNFKRT-WDHAYNITFNNEDKPLLP 956

Query: 914  WNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLI 973
            +    +   ++D LK      D     V   +AD  +   +     D+       LK  +
Sbjct: 957  YEIMKIADSFLDPLKDRLVRLDNLGNIVNPEDADNIEYIDQF----DAERTFYDTLKDFL 1012

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
            +  QKT ++   R S   P         LQE    V  E P       + ++  N L   
Sbjct: 1013 F--QKTKQLAALRESKGFP-------GLLQEPESFVD-ESP-----DHSVSILINQL--- 1054

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTF 1093
                      +R+T  A    +    +++ ++ V PG  +G + AQSIGEP TQMTL TF
Sbjct: 1055 ----------YRITEAAVTKFLELSATKYNRAKVEPGTAVGAIGAQSIGEPGTQMTLKTF 1104

Query: 1094 HYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCALEYTTL 1152
            H+AGV++ NVTLGVPR++EIIN +K I TP ++  L   VN   ER A+ V+  +E T L
Sbjct: 1105 HFAGVASMNVTLGVPRIKEIINASKTISTPIINAVL---VNEDDERAARVVKGRIEKTIL 1161

Query: 1153 RSVTEATEVWYDPDPMGTIIEEDVEFVKSY-YEMPDEDIAPEKISPWLLRIELNREMMVD 1211
            + V    +  Y  +     ++ D+E ++    E+  ++I    +    L++ L   ++  
Sbjct: 1162 QDVVYYIQDVYKENQAYLQVKVDLETIERLQLELNIDEIRLAIVKAPKLKLALEDVIITG 1221

Query: 1212 KKLSMAAVAEKINQEFDDDLTCIFNDDN---ADKLILRI----RIMNDEAPKGELNDESA 1264
            +      V++ +             D +   A++L  R+    R++     KG L D S 
Sbjct: 1222 RNKISVCVSDALLDSISKTAAAKGIDTSSTMANELFFRMQHLKRVLTKVVVKG-LPDISR 1280

Query: 1265 EDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALL 1324
                 +  I  +   E+ + G  L  V+  + V   +T +NH++E+ E LGIEA R  ++
Sbjct: 1281 A----VINIRDDGKKELLVEGYGLKEVIATDGVVGCKTKTNHVLEVYETLGIEAARSCII 1336

Query: 1325 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1384
            +E+   +S  G  V+ RH+ +L D M+Y+G ++ ITR G+ +     +   SFE+T D L
Sbjct: 1337 NEIDYTMSKHGMSVDPRHIQLLGDVMSYKGEVLGITRFGLAKMRDSVLQLASFEKTTDHL 1396

Query: 1385 LDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSL 1418
             DAA + + D + GV+E ++LGQ   IGTG   L
Sbjct: 1397 FDAAFYMKKDLVEGVSECVILGQTMTIGTGAFQL 1430


>gi|225435153|ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
            vinifera]
          Length = 1383

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1447 (34%), Positives = 745/1447 (51%), Gaps = 152/1447 (10%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGETTERG-KPKPGGLSDPRLGTIDRKMKCETCTAN 72
            K+  ++F + S  EI + + VQ+  G   +   KP   GL DPR+G  ++   C TC  N
Sbjct: 20   KIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLDPRMGPANKNGTCATCLGN 79

Query: 73   MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK------FKQALK 126
              +CPGH G+L LA P++++G++ T++ I++ +C +CS++L DE   K        Q ++
Sbjct: 80   FRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLDEKASKDYLKKMRSQKME 139

Query: 127  IRNPKNRLKKILDAC------KNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
                   +KKI+  C      K   KC     ++                 G  +  +++
Sbjct: 140  ALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMN-----------------GIVKKAVSV 182

Query: 181  EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAE------RVLGVLKRISDEDCQLLGL 234
             G+       A     +    +    E K + +        +VL + KR+ DEDC LL L
Sbjct: 183  LGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLSLFKRMMDEDCDLLNL 242

Query: 235  NPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQ-ERN 282
                 RP+ ++L  + +PP  +RPS           +D+T +L  II+ N +L ++ +  
Sbjct: 243  AE---RPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDT 299

Query: 283  GAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 342
            G+ +  ++ +   LQ  +A Y ++++ G P A Q + RP+     RLK K+GR RGNL G
Sbjct: 300  GSTSKCLAGW-DYLQIEVAQYINSDVRGVPLAMQ-AARPLSGFVQRLKGKQGRFRGNLSG 357

Query: 343  KRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 402
            KRV+++ RTVI+PDP + I ++ +P  +A  L+YPE V+ +NIE+L++ +  GP   PG 
Sbjct: 358  KRVEYTGRTVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPG- 416

Query: 403  TGAKYIIRDDGQRLDLRYL-KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
              AK I   DG    L +  +K     L+ GY VERHL DGD VLFNRQPSLH+MSIM H
Sbjct: 417  --AKLIRYPDGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCH 474

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
            R +IMP+ T R N SV +PYNADFDGDEMNMHVPQ+ E R E L LM V   + +P++  
Sbjct: 475  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGE 534

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG----KVPQPTILKPRPLWTG 577
             ++   QD L     IT++DTF ++  F   LM     DG     +P P I+KP  LWTG
Sbjct: 535  ILVASTQDFLTSSFLITRKDTFYDRAAFS--LMCSYMGDGMDLVDLPTPAIIKPVELWTG 592

Query: 578  KQVFNLIIPKQINL-------FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTL 630
            KQ+FN+++    N+            ++    K  +   D  V     EL+SG L K TL
Sbjct: 593  KQLFNVLLRPHANVRVYLNLTVMEKTYNKRRGKETMCPSDGFVYFRNSELISGQLGKATL 652

Query: 631  GTST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETIND 689
            G      L  V+  +    AA   +     L   W+  + FSIGI D        +  + 
Sbjct: 653  GNGNKDGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSK 712

Query: 690  TISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESN 749
             I +   N   LI+Q     L+ +PG    ++ E ++  VLN  R+   +   + L   N
Sbjct: 713  RIEEGYENCHELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEELHWRN 772

Query: 750  NLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVE 809
            +   M   GSKGS INISQM ACVGQQ+V G+R P GF+DRTLPHF +    P+++GFV 
Sbjct: 773  SPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVA 832

Query: 810  NSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLG 869
            +S+  GLT  EFFFH MGGREGL+DTAVKT++TGY+ RRL+KA+ED+ ++YD TVRN+ G
Sbjct: 833  SSFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANG 892

Query: 870  DVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKT 929
             ++QFLYG+DGMD   +E +  D   +                N+N  ++       +K 
Sbjct: 893  SIVQFLYGDDGMDPARMEGK--DGFPL----------------NFNRLFL------KVKA 928

Query: 930  IKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSD 989
                 +       ++E    +L     ++   S     NL   +   ++ FK + R    
Sbjct: 929  TCPAGENASLSALQIEETVKRLKEHNTSAEGCSDAFKTNLSGFLEECKEKFK-NTREALG 987

Query: 990  MHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTRE 1049
            +H   V E    +QE+         +S    K   +F +  + S +  KR+         
Sbjct: 988  LHGEHVGEENLDIQEKF-----AKNISGITSKQLQVFLDTCI-SRYQLKRI--------- 1032

Query: 1050 AFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPR 1109
                                G  IG + A SIGEP TQMTL TFH+AGV++ NVTLGVPR
Sbjct: 1033 ------------------EAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPR 1074

Query: 1110 LREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMG 1169
            ++EIIN AK+I TP ++  L+   N+  + A+ V+  +E TTL  V ++ ++        
Sbjct: 1075 IKEIINGAKRISTPIITAALE--CNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLAL 1132

Query: 1170 TIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDD 1229
              +  D+E +++     D +I  E I    LR   NR + + ++      A K+      
Sbjct: 1133 IAVALDMEGIQASQLSIDSNIVRESI----LR---NRRIKLKQQHIKVLDAGKLEVHPQG 1185

Query: 1230 DLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLK--KIESNMLTEMALRGVN 1287
            D + I  + +A K +L   ++     KG    E+ E  V  K  K++ N+L E    G  
Sbjct: 1186 DRSTIHFELHALKNLLPTVVV-----KG---IETVERAVINKDNKVKYNLLVE----GTG 1233

Query: 1288 LLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILC 1347
            L  VM  E V  R TTSNH+IE+ + LGIEA R+ +++E++  ++  G  ++ RH+ +L 
Sbjct: 1234 LQTVMGTEGVIGRETTSNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLA 1293

Query: 1348 DTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQ 1407
            D MT+RG ++ ITR GI + D   +M  SFE+T D L +A+V    D + GV+E I++G 
Sbjct: 1294 DLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGI 1353

Query: 1408 LAPIGTG 1414
               +GTG
Sbjct: 1354 PMQLGTG 1360


>gi|430813213|emb|CCJ29412.1| unnamed protein product [Pneumocystis jirovecii]
          Length = 1390

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1465 (34%), Positives = 766/1465 (52%), Gaps = 184/1465 (12%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQI--------------EHGETTERGKPKPGG---LSDPR 56
            ++R ++FG+  P +I +  V+++               +G   +R   K  G   +S+  
Sbjct: 12   QIRNIEFGVFGPKDIIKQGVLEVSTRELYNIIDRSTVRNGALDKRQHKKIRGKPSISNYT 71

Query: 57   LGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILAD- 115
             GT D++  CETC   +  C GHFG+++L  P+FHIG+ KT+++I++++C +CSKIL   
Sbjct: 72   QGTSDKQAICETCGEKIVTCVGHFGYVKLILPVFHIGYFKTIITILQNICKDCSKILLKL 131

Query: 116  EDDHKFKQALKIRNPKNR-----LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGG 170
            +D + F + L+     N       K+I D CK    C        P     + + K  G 
Sbjct: 132  KDTYSFLKELRKAETDNLKKSQIYKRINDTCKKVRIC--------PNCQSTQGVVKKVGA 183

Query: 171  CGAQQPKLTIEGMKMIAE---YKAQRKKNDDQEQLPEP----VERKQTLTAERVLGVLKR 223
                        +K+I E   YK Q+      +  P+      +    L   +VL + K+
Sbjct: 184  ------------LKIIHEKFKYKFQKTFETILKSTPDMKTHLSKAHDDLNPLKVLNLFKQ 231

Query: 224  ISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNE 274
            I   DC+LLG+NP   RP+  I Q +P PP  +RPS         DDLT +L  II  N 
Sbjct: 232  IPPMDCELLGINPLKGRPEMFIWQCIPAPPVCIRPSISQDGASTEDDLTVKLTEIIWTNS 291

Query: 275  NLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEG 334
             ++     G P   + E    LQ  +A Y ++ELPG   ++Q + +P++  C RLK K+G
Sbjct: 292  LIKSALEKGTPIQNLMEQWDYLQLCVAMYINSELPGI--SSQANTKPMRGFCQRLKGKQG 349

Query: 335  RIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEY 394
            R RGNL GKRVDFSARTVI PDP ++IDQ+ +P  IA  LTYPE VT YNIE+LK+ +  
Sbjct: 350  RFRGNLSGKRVDFSARTVIGPDPNLSIDQIAIPERIAKILTYPEKVTYYNIEQLKKAIIN 409

Query: 395  GPHPPPGKTGAKYII-RDDGQRLDLRYL-KKSSDHHLELGYKVERHLNDGDFVLFNRQPS 452
            GP   PG   A YI+ +++G +  L++  ++     L++G  VERH+ D D VLFNRQPS
Sbjct: 410  GPDIHPG---ANYIMNQENGFKKFLKFGDRQKMALELKIGDVVERHIRDDDIVLFNRQPS 466

Query: 453  LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPK 512
            LHK+SI+ H+++  P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE +ELM V  
Sbjct: 467  LHKLSILCHKVR--PWKTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAIELMSVKN 524

Query: 513  CIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV--PQPTILK 570
             +V+P++  P++  +QD +     I+++D F ++  F +I  +  D +  +  P P I+K
Sbjct: 525  NLVTPRNGDPIIAAIQDFVTASYLISQKDNFYDRKTFTHICSFMVDANMHIDLPSPVIIK 584

Query: 571  PRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGI--LTAGDTLVRIEKGELLSGTLCKK 628
            P P   G++       K +  F +        KGI  L   D  + I   E++ G + K 
Sbjct: 585  PVPY--GQE------SKYLMSFSSP-------KGIPDLCINDGYLLIRGSEIMCGVMDKS 629

Query: 629  TLGTST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETI 687
            T+G     S+ +VI +  GP  A + +     L   W+  + FSIGI D        +  
Sbjct: 630  TVGDGKKNSIFYVILKNYGPTEAAEAMNRLAKLCARWIGNHGFSIGINDVQPGVLLKKKK 689

Query: 688  NDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSE 747
               +  A  +  +LI       LE +PG    ++ E KV+ +L+  RD+ G      L+ 
Sbjct: 690  ESLVKAAYQSCDDLIYALSSGKLENQPGCDAEQTLEAKVSGILSKVRDDVGQICMSELAR 749

Query: 748  SNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD-DYGPESRG 806
            +N    M T GSKGS IN+SQM +CVGQQ + G R+P GF DR+LPHF K+  + P ++G
Sbjct: 750  TNASLIMATCGSKGSKINVSQMVSCVGQQIISGSRVPNGFQDRSLPHFQKNCKFQPPAKG 809

Query: 807  FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRN 866
            FV+NS+  GLTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+ ++YDGTVRN
Sbjct: 810  FVKNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSLQYDGTVRN 869

Query: 867  SLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDD 926
            S   ++QF+YG+DG+D  ++E            EF +          WN  + +   I  
Sbjct: 870  SSSGIVQFIYGDDGLDPTYLEGDNC------PVEFSRT---------WNHCHNITSKIQS 914

Query: 927  LKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWN------AQKTF 980
               +    ++ +   + LE  +++  TE             N K  I N      A+   
Sbjct: 915  KGLLP--YEIIETTRKYLENPKFKNCTE-------------NFKNSILNFIQKNIAEHLA 959

Query: 981  KVDPRR--PSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASK 1038
             +  RR  PS +              + K +  E+ L ++++K     F +         
Sbjct: 960  AIRERRNLPSFLEHTN--------DSKYKNIINEESLEIDSKKTVDSIFKV------TKH 1005

Query: 1039 RVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1098
            ++L   +L  E           ++++S V PG  +G V AQSIGEP TQMTL TFH+AGV
Sbjct: 1006 QLLTYLQLCLE-----------KYIKSKVEPGTAVGAVGAQSIGEPGTQMTLKTFHFAGV 1054

Query: 1099 SAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEA 1158
            ++ NVTLGVPR++EIIN AK I TP ++  L    ++   R   V+  +E T ++ +T  
Sbjct: 1055 ASMNVTLGVPRIKEIINAAKIISTPIVTCKLVAEDDTRSARV--VKGRVEKTYMKDITTF 1112

Query: 1159 TEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMA 1217
             E  Y P      I+ D   V +   E+  ++IA    S W    +  +  + + K+S++
Sbjct: 1113 IEEVYGPTSSYIGIKIDWNTVNRLQLEITIDEIAA---SIW----QAPKLKISNTKVSIS 1165

Query: 1218 AVAEKINQEFDDDLTCIFNDDNADKLILRI--------RIMNDEAPKGELNDESAEDDVF 1269
            +         +D +    ++D+ DK    +        R +     KG  +   A     
Sbjct: 1166 S---------EDKIKVYVSNDDKDKEFDEVYYKLQHYKRTLPHVIVKGIPSTSRA----- 1211

Query: 1270 LKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRV 1329
            +  I+      + + G  L  V+  + V   +T++NH++E+ +VLGIEA R +++ E+ +
Sbjct: 1212 VINIDEKGKNTLLVEGYGLRDVINTDGVVGTKTSTNHVMEMKQVLGIEAARASIIKEIDI 1271

Query: 1330 VISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV 1389
             +S  G  ++ RH+ +L D MTYRG ++ ITR G+ +     +M  SFE+T D L DAA 
Sbjct: 1272 TMSSHGMNIDPRHVMLLGDVMTYRGEILGITRFGVAKMKNSVLMLASFEKTTDHLFDAAA 1331

Query: 1390 FAESDYLRGVTENIMLGQLAPIGTG 1414
                D + GV+E I+LG+ APIGTG
Sbjct: 1332 RLTKDSIEGVSECIILGKPAPIGTG 1356


>gi|449296109|gb|EMC92129.1| hypothetical protein BAUCODRAFT_78328 [Baudoinia compniacensis UAMH
            10762]
          Length = 1477

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 504/1531 (32%), Positives = 774/1531 (50%), Gaps = 203/1531 (13%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQI--------EHGETTERGKP--KPGGLSDPRLGTIDRK 63
            ++  +QFG+ SP  I   SVV I        E    T +G+P  K G L D +LGT  + 
Sbjct: 23   RIGALQFGLCSPQNIVAQSVVNINDRNLYDLEADRETGKGRPLTKHGPL-DEKLGTSGKN 81

Query: 64   MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
              C+TC   + EC GHFGH++L  P  H G+MK ++ ++  VC  CS+IL  E + +   
Sbjct: 82   SLCQTCGLGLKECNGHFGHVKLTLPALHYGYMKKIVDVLSCVCKGCSRILLPEKERRV-- 139

Query: 124  ALK-IRNP-------KNRLKKILDACKNKTKCEGGDEIDVP-GQDGEEPLK--------- 165
            AL+ +R P           KKI   CK    C     ++ P  +    P+K         
Sbjct: 140  ALRQLRRPGLDSLRKAALCKKISADCKKIKVCPRCAGLNGPVRRQAHHPVKIMHHRFAKY 199

Query: 166  KNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRIS 225
             +      Q+P+  +E  +   E  A++   D +  +   ++    LT  RVL + K++ 
Sbjct: 200  TSSNAKSKQKPQAMVEFEESFTE--AKKASADIERNMRRALD---DLTPLRVLHIFKKMP 254

Query: 226  DEDCQLLGLNP-KYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNEN 275
            D D +LLGL+P +  RP++M+   +P PP  +RPS         DD+T++L  I++ N  
Sbjct: 255  DMDVELLGLDPSRGGRPEYMVWTHVPAPPVAIRPSVAQDAASTEDDITNKLGDIVQINNL 314

Query: 276  LRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGR 335
            L+     G P   + E  + LQ  +A Y D   PG  R +Q  GR ++  C RLK K+GR
Sbjct: 315  LKAALTLGQPITKVMEMWEFLQVQVAMYIDGNCPGLGRDSQ-WGRMMRGFCQRLKGKQGR 373

Query: 336  IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 395
             RGNL GKRVDFS RTVI+PDP + ID++ VP  +A+++TYPE VT YNIE+L++ +  G
Sbjct: 374  FRGNLSGKRVDFSGRTVISPDPNLGIDEVAVPVRVAMHMTYPERVTSYNIEKLRKRILRG 433

Query: 396  PHPPPGKTGAKYIIR-DDGQRLDLRYLKKSSD-----HHLELGYKVERHLNDGDFVLFNR 449
                PG   A ++++  DG+++ LR ++++         LE+G  VERHL DGD VLFNR
Sbjct: 434  TQKHPG---ANHVVKARDGRKIMLRIMEQNGKLQQVVDRLEIGDVVERHLEDGDIVLFNR 490

Query: 450  QPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMM 509
            QPSLHK+SI+ H++K+ P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E R E +ELM 
Sbjct: 491  QPSLHKLSILSHKVKVRPWRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARTEAIELMG 550

Query: 510  VPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW------------E 557
            V   + +P++  P++  +QD + G   I+++D F  +  F  I+ +             E
Sbjct: 551  VKHNLATPKNGTPIIAAIQDFITGSYLISQKDRFFTRRQFCQIVTFMFDGMHVDDPLTGE 610

Query: 558  DFDGKVPQPTILKPRPLWTGKQVFNLII------PKQINLFRTAAWHA---DNDKGILTA 608
              D ++P P I KP+ LWTGKQV+N+++      P  +NL      ++    N    L  
Sbjct: 611  QRDVQIPPPAIFKPQSLWTGKQVWNVLMKPHPSYPVNVNLDAKGKQYSAPLGNTAPDLLP 670

Query: 609  GDTLVRIEKGELLSGTLCKKTLGTST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ 667
             D+ + +   E++ GT+ K  +G     S+ +VI  + GP+ A   +     L   WL +
Sbjct: 671  NDSYLVVRNSEVMCGTMDKAVIGDGKKDSIFYVIMRDFGPEYAVAAMNRLAKLSARWLTE 730

Query: 668  NAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVN 727
              FSIGI D     K  E   + +  A     +LIK   +  L+ +PG    ++ EN+++
Sbjct: 731  QGFSIGISDVYPSGKLREEKENLVKAAYAKCVHLIKLYNEGKLQRDPGCDEEQTMENQIS 790

Query: 728  QVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGF 787
             +L+  R + G+     LS  N    M   GSKGS IN+SQM A VGQQ + GKR+  GF
Sbjct: 791  GILSEVRQQCGNVCFSELSRFNAPLTMAKCGSKGSNINVSQMVAAVGQQIIGGKRVLDGF 850

Query: 788  VDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQR 847
             DRTLPHF+K+   P ++GFV NS+  GL P EF FHAM GREGL+DTAVKT+ETGY+ R
Sbjct: 851  QDRTLPHFSKNSRDPPAKGFVVNSFFSGLNPTEFIFHAMSGREGLVDTAVKTAETGYMSR 910

Query: 848  RLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF 907
            RL+K++ED+  +YD TVRNS   V+Q  +G+DG+D + +E         K   F++ +  
Sbjct: 911  RLMKSLEDLSARYDHTVRNSSEGVVQMRFGDDGLDPLDMEGSA------KPVHFERTWMH 964

Query: 908  EMDE--ENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPL 965
             +    +N     M +E  D    + E+ DV   ++ +   D  +L       GD+S   
Sbjct: 965  AVTSTWDNSERGLMSEEASD---IVAEMLDVERRKLVRFADDGRELPF-----GDTS--- 1013

Query: 966  PVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED---PLSVEAQKN 1022
                                       ++ +E+V    E ++V  G      +S +A+  
Sbjct: 1014 ------------------------DEGVDQLESVRGFLETVRVFVGTKVNAVISSQAKYT 1049

Query: 1023 ATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIG 1082
             ++  N  LR      R+    ++T  A    +     +F +S V PG  +G V AQSIG
Sbjct: 1050 GSVNGNSDLR------RLPTSFKITETALRLFLTLCLRKFEKSKVEPGHAVGAVGAQSIG 1103

Query: 1083 EPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AK 1141
            EP TQMTL TFH+AGV+  ++T GVPR++EIIN ++ I TP ++  L         R AK
Sbjct: 1104 EPGTQMTLKTFHFAGVAGMSITQGVPRIKEIINASRVISTPVITCALDSRYEELAGRFAK 1163

Query: 1142 NVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLR 1201
             +   ++ T L+ +                  EDV FV   Y                +R
Sbjct: 1164 AI---IQKTYLKDIVAYV--------------EDVWFVGGCY--------------LNMR 1192

Query: 1202 IELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLIL---RIRIMNDEAPKGE 1258
            I+      +  ++ MA V + + +         F   N +  ++    +R+  D     +
Sbjct: 1193 IDWRTVEGLGLRIGMAEVKDAVERHKG------FKTLNVEARVVGGCHLRVFCDTPSASQ 1246

Query: 1259 LNDESAEDDVF-----LKKIESNMLTE-------------------------MALRGVNL 1288
              + +  D++F     LK+   N++                           + + G  L
Sbjct: 1247 TKNAAVTDELFMTIQQLKRRLPNVVIRGYPDAHRAILKKDDKPDRTGREPISVFVEGYGL 1306

Query: 1289 LAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCD 1348
               M    +D   TT+N ++E+  VLGIEA RR ++ E+  V+   G  ++ RH+ +L D
Sbjct: 1307 KLCMTTPGIDGLHTTTNSIMEVASVLGIEAARRTIISEISSVMG--GMDIDPRHMQLLAD 1364

Query: 1349 TMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQL 1408
             MTYRG ++ ITR G+++     +   SFE+T D L DAAV  + D ++GV+E I++GQ 
Sbjct: 1365 VMTYRGEVLGITRFGLSKMRDSVLQLASFEKTPDHLFDAAVGGKRDEVKGVSECIIMGQP 1424

Query: 1409 APIGTGDCSLYLNDEMLKNAIELQLPSYMEG 1439
              IGTG   +     + +   ++ LP +  G
Sbjct: 1425 VRIGTGSVGIVRPLGVEEEEKKVTLPGFRAG 1455


>gi|380495147|emb|CCF32618.1| RNA polymerase Rpb1 [Colletotrichum higginsianum]
          Length = 1456

 Score =  755 bits (1950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/1461 (34%), Positives = 763/1461 (52%), Gaps = 125/1461 (8%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHG---ETTERGKPKPGGLSDPRLGTIDRKMKCETCT 70
            + + ++FGI S  +I   +V+++      +  +   P   G  DPRLGT  +  KC TC 
Sbjct: 21   RFKGIKFGIQSNQDIANQAVLEVSDRLLYDIEKNRAPYQHGPLDPRLGTSSKTGKCATCQ 80

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALK--- 126
             ++  C GHFGH+ L  P FHIG+++ V+ I++ +C +C K+L  E + + F + L+   
Sbjct: 81   ESLQNCTGHFGHVRLPLPAFHIGYLRFVMMILQDICKDCGKVLLTESEKRAFLKELRRPL 140

Query: 127  IRNPKNR--LKKILDACKNKTKC------EGG-DEIDVPGQDGEEPLKKNKGGCGAQQPK 177
            + N +     K+I + C+    C      +G   ++ V     ++ +  NK     + P 
Sbjct: 141  LDNLRRSQICKRINEQCRKVKNCMYCGSVQGQIRKVGVLKLAHDKFVTYNKSTSAKKVPP 200

Query: 178  LTIEGMKMIAEYKAQRKKNDD-QEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
             +   +K    +   RK N +  + L + +E    L   RVL + K IS  DC+LLGL+P
Sbjct: 201  ES--KIKFDESFSEARKNNAELDKHLRKAMEDMNPL---RVLNLFKMISPTDCELLGLDP 255

Query: 237  KYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAH 287
               RP+  I Q LP PP  +RPS         DD+T +LA I+  +  +R   + G+P  
Sbjct: 256  AEGRPEMFIWQFLPAPPVCIRPSVAQDNASNEDDITTKLADIVWVSGMIRSALQKGSPVQ 315

Query: 288  IISEFAQLLQFHIATYFDNELPG--QPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             I E  + LQ  +A Y ++++PG  QP      G+ ++  C RLK K+GR RGNL GKRV
Sbjct: 316  TIMEQWEYLQLQVAMYVNSDVPGLQQPGF----GKAVRGFCQRLKGKQGRFRGNLSGKRV 371

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFS RTVI+PDP + IDQ+ VP  +A NLTYPE V+ YNIE+LKE V  GP   PG   A
Sbjct: 372  DFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVSDYNIEKLKECVRNGPSIWPG---A 428

Query: 406  KYIIRDD--GQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
            + +I+ D  G ++ L++  ++     L++G  VERHL D D VLFNRQPSLHK+SIM H 
Sbjct: 429  QQVIKKDDGGYKISLKFGNRNQVAQDLKIGDVVERHLEDNDIVLFNRQPSLHKLSIMSHL 488

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +K+ P+ TFRLN  V  PYNADFDGDEMN+HVPQ+ E RAE + LM V   + +P++  P
Sbjct: 489  VKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLATPKNGEP 548

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV----PQPTILKPRPLWTGK 578
            V+   QD +     ++ +D F ++  F  I M     DGKV    P P +LKP+ LWTGK
Sbjct: 549  VIAATQDFITAAYLLSSKDNFFDRKTFTYICMHM--MDGKVHLDLPPPAVLKPKALWTGK 606

Query: 579  QVFNLII------PKQINL------FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLC 626
            QVF++++      P +INL      ++  A    +    +   D  + I   E++ G + 
Sbjct: 607  QVFSMMMRPNKDSPVKINLDAKCREYKARAGQCPD----MDPEDAWLVIRNSEVMCGVMD 662

Query: 627  KKTLGTST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTME 685
            K T+G     S+ +VI  + GPDAA   +     L    L    FSIGIGD     K ++
Sbjct: 663  KSTVGDGKKDSVFYVILRDFGPDAAVVTMNRLAKLCARHLTNRGFSIGIGDVFPTEKLLD 722

Query: 686  TINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSL 745
                 +  A   V  LI + +   LE   G +M ++ EN ++ +L+  R +AGS   ++L
Sbjct: 723  KKRTLVKNASIEVDVLIDKYKKNKLEKATGCSMEQTLENSISGLLSKLRTQAGSHCIETL 782

Query: 746  SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESR 805
            S++N    M   GSKGS IN++QM A VGQQ + GKR+  GF DRTLPHF K+   P S+
Sbjct: 783  SKNNAPLVMAKCGSKGSNINVAQMVALVGQQIIGGKRVADGFQDRTLPHFHKNAPQPPSK 842

Query: 806  GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVR 865
            GFVENS+  GL P EF FHAM GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD TVR
Sbjct: 843  GFVENSFYSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVR 902

Query: 866  NSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYM------ 919
             S G ++QF +G D +D V +E+        K   FD+ F    +   W+ N        
Sbjct: 903  TSGGGIVQFQFGADKLDPVDMEASA------KPVNFDRTFS-HAENLTWDNNERALLPDE 955

Query: 920  LQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKT 979
            + +Y D++ +               E  RY   + +   GD +       +R  +  +  
Sbjct: 956  IVKYCDNMLS--------------RERARYPRKSLL---GDLTLDYDNEEER--YTDEHE 996

Query: 980  FKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKR 1039
               D  R  + +     E + +L E   +    D + V+  ++      +  +  FA K 
Sbjct: 997  GARDFLRSLESYVGARAEKLRRLMEMTGLTATADSMDVDVDED-----EVRHKKAFADK- 1050

Query: 1040 VLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1099
            V K    T + F  +  E   ++ ++ V PG  +G V AQSIGEP TQMTL TFH+AGV+
Sbjct: 1051 VAKMSETTLKLFIRLCLE---KYKKAHVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVA 1107

Query: 1100 AKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEAT 1159
              ++T GVPR++EIIN +K I TP ++  L    N     A+ V+  +E T +  +    
Sbjct: 1108 GMSITQGVPRIKEIINASKVISTPVITCPLVQ--NREMTAARIVKARIEKTFVEDILSYI 1165

Query: 1160 EVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKK-LSMAA 1218
            E  +  +    +++ D++ +             E I         +++M V +  + + A
Sbjct: 1166 EDEWFAESGSVVLKVDMDALSDMQLGITLGDVAEAICK-------HKKMKVSRSDMHIGA 1218

Query: 1219 VAEKINQEFDDDLTCIFND-----DNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKI 1273
               +I    D+             D    L++R   +    P   ++         ++  
Sbjct: 1219 GRIEIRVRLDESAAAKRAIKAKPVDELGDLLVRANYLRRTIPTVAISGYPEATRAIIQTS 1278

Query: 1274 ESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
            E    T + + G  LLA M  E V+ RR  SN+++E  +VLGIEA R  +  E+  V+  
Sbjct: 1279 EQETHTVL-VEGYGLLACMNTEGVEGRRVKSNNVMECRDVLGIEAARSTIAYEIGEVMG- 1336

Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
                ++ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T D L +AA   ++
Sbjct: 1337 -DMNIDPRHMQLLADVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTPDHLFEAAAGMKT 1395

Query: 1394 DYLRGVTENIMLGQLAPIGTG 1414
            D + GV+E I++GQ   +GTG
Sbjct: 1396 DQIEGVSECIIMGQTMTVGTG 1416


>gi|254584114|ref|XP_002497625.1| ZYRO0F09856p [Zygosaccharomyces rouxii]
 gi|238940518|emb|CAR28692.1| ZYRO0F09856p [Zygosaccharomyces rouxii]
          Length = 1458

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1463 (34%), Positives = 765/1463 (52%), Gaps = 112/1463 (7%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCT 70
            K+  ++F  LS  +I   S V+I   +    E G+ PK GG  DP++G     M+C+TC 
Sbjct: 12   KISGLEFSALSAADIVAQSEVEISTRDLFDLENGRAPKTGGALDPKMGVSSSSMECQTCH 71

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALK--- 126
             N+A C GHFGH++LA P+FHIG+ K  + I++ +C  CS IL ++ D K F   L+   
Sbjct: 72   GNLASCHGHFGHIKLALPVFHIGYFKATIQILQGICKECSSILLEDTDKKHFLSELRRPG 131

Query: 127  IRNPKNR--LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
            + N +    LKK+LD CK + +C     +     +G   +KK   G G+   K+  +  +
Sbjct: 132  VDNLRRMGILKKVLDQCKKQRRC-----LQCGALNG--VVKKAAAGGGSASLKIIHDTFR 184

Query: 185  MIAEYKAQRKKN--DDQE-------QLPEPVER-KQTLTAERVLGVLKRISDEDCQLLGL 234
               +     K+    D +       +L   V+R    L   + L + K++  EDC+LLG+
Sbjct: 185  WAGKKSVPEKEKWIGDWDSVLAHSPELERYVKRCMDDLNPLKTLNLFKQVKPEDCELLGI 244

Query: 235  NP--KYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQER 281
            +   K  RP+  I + LP PP  +RPS           DDLT +L  ++  +  ++    
Sbjct: 245  DSTIKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEVVWTSSLIKAGLE 304

Query: 282  NGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSG---RPIKSICSRLKAKEGRIRG 338
             G   + + E    LQ  +A Y +++       +  +G   +PI+  C RLK K+GR RG
Sbjct: 305  KGISINNMMEHWDYLQLAVAMYINSDSVNPAILSGGTGGKVKPIRGFCQRLKGKQGRFRG 364

Query: 339  NLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHP 398
            NL GKRVDFS RTVI+PDP +++D++ VP  +A  LTYPE VT YN  +L++LV  GP+ 
Sbjct: 365  NLSGKRVDFSGRTVISPDPNLSVDEVAVPDRVAKVLTYPERVTRYNKGKLQQLVVNGPNE 424

Query: 399  PPGKTGAKYIIR-DDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKM 456
             PG   A Y+++ D+  R +LR+  +     +L +G  VERHL DGD VLFNRQPSLH++
Sbjct: 425  YPG---ANYLLKKDEDARRNLRFGDRVKLAKNLRIGDLVERHLEDGDVVLFNRQPSLHRL 481

Query: 457  SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 516
            SI+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQS E RAE + LM V   +++
Sbjct: 482  SILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQSEEARAEAINLMGVKSNLLT 541

Query: 517  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED----FDGKVPQPTILKPR 572
            P+S  P++   QD + G   I+ +D+F +K     +L    D    FD  +P PTI KP 
Sbjct: 542  PKSGEPIIAATQDFITGSYLISHKDSFFDKYDMTQLLSMMSDGALQFD--IPPPTIWKPC 599

Query: 573  PLWTGKQVFNLII------PKQINL-FRTAAWHADNDKGI---LTAGDTLVRIEKGELLS 622
             LWTGKQ+F+L+I      P  +NL  +   +     K +   ++  D  V I   ++LS
Sbjct: 600  YLWTGKQIFSLLIRPNKKSPVVLNLDAKNKVYIPPKSKSLPNEMSQNDGFVLIRGSQILS 659

Query: 623  GTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADA 681
            G + K  LG     S+ + I  + G   A + +     L   ++    FSIGI D     
Sbjct: 660  GVMDKSVLGDGKKHSVFYTILRDYGSQEAAEAMNRMAKLCARYVGNRGFSIGISDVTPAE 719

Query: 682  KTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSA 741
            +  E   + +  A      LI       LE +PG    ++ E K+  +L+  R+E G   
Sbjct: 720  ELKEKKEEMVESAYAKCDELIDLFSKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVC 779

Query: 742  QKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYG 801
               L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHF K+   
Sbjct: 780  INELDNMNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGSRVPDGFQDRSLPHFPKNSKT 839

Query: 802  PESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD 861
            P+S+GFV NS+  GLTP EF +HA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+   YD
Sbjct: 840  PQSKGFVRNSFFSGLTPPEFLYHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCLYD 899

Query: 862  GTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQ 921
             TVR S   ++QF YG DG+D + +E         +  +      F   +    P  ++Q
Sbjct: 900  NTVRTSSNGIVQFTYGGDGLDPLEMEGNAQPVNFNRTWDHATNVTFNNMDRGLLPYQIMQ 959

Query: 922  ---EYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQK 978
               E +  L+      D    E+ K   DR     E     D+      +L+  IW A+ 
Sbjct: 960  VTEEILQPLENRLVRYDNLGNEITKENRDR----IEYIDQNDAERGFYHSLRDFIW-AKA 1014

Query: 979  TFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASK 1038
                  R   DM      E +D+    L+ V  ++ +  + + +    + I         
Sbjct: 1015 QLLAKFRGSKDMK-----ELMDEPALELQSVDLDENVPEDIRHSVDQVYRI--------- 1060

Query: 1039 RVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1098
                  ++ RE     I     ++ ++ V PG  +G + AQSIGEP TQMTL TFH+AGV
Sbjct: 1061 ----TDKMVREFLRVAI----LKYRRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGV 1112

Query: 1099 SAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCALEYTTLRSVTE 1157
            ++ NVTLGVPR++EIIN +K I TP ++  L   VN + ER A+ V+  +E T L  V  
Sbjct: 1113 ASMNVTLGVPRIKEIINASKVISTPIINAVL---VNESDERAARVVKGRIEKTLLSDVAF 1169

Query: 1158 ATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDK-KLS 1215
              +  Y  +     +  D+  + K   E+  EDIA        L+I+ +   +V K K++
Sbjct: 1170 YIQDVYRDNLSYLQVRVDLSTIDKLQLELTIEDIAVAMTRAPKLKIQASDVHIVGKDKIA 1229

Query: 1216 MAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAP----KGELNDESAEDDVFLK 1271
            +    +    +    ++ +  + + +++  R++ +    P    KG L+D S      + 
Sbjct: 1230 INVFPDGAKAK---SISTLAKEPSENEVFYRMQQLRRALPGIVVKG-LSDISRA----VI 1281

Query: 1272 KIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
             I  +   E+ + G  L  VM  + V   +T +NH++E+  VLGIEA R +++ E+   +
Sbjct: 1282 NIRDDGKRELLVEGYGLRDVMSTDGVVGHKTVTNHILEVYSVLGIEAARASIVGEIDYTM 1341

Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFA 1391
            S  G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T D L DAA + 
Sbjct: 1342 SNHGMSVDPRHIQLLGDVMTYKGEILGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYM 1401

Query: 1392 ESDYLRGVTENIMLGQLAPIGTG 1414
            + D + GV+E I+LGQ   IGTG
Sbjct: 1402 KKDAVEGVSECIILGQTMAIGTG 1424


>gi|363540008|ref|YP_004894424.1| mg373 gene product [Megavirus chiliensis]
 gi|448825325|ref|YP_007418256.1| DNA-directed RNA polymerase subunit 1 [Megavirus lba]
 gi|350611173|gb|AEQ32617.1| DNA-directed RNA polymerase subunit 1 [Megavirus chiliensis]
 gi|425701254|gb|AFX92416.1| DNA-directed RNA polymerase subunit 1 [Megavirus courdo11]
 gi|444236510|gb|AGD92280.1| DNA-directed RNA polymerase subunit 1 [Megavirus lba]
          Length = 1491

 Score =  755 bits (1949), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1529 (32%), Positives = 802/1529 (52%), Gaps = 196/1529 (12%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ----IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCT 70
            +  V+F I   +++ + S +     I   E     +P  GG+ D RLG  + K +C TC 
Sbjct: 18   ITAVEFRIYGNNDVIKYSAISDPNGITVAEIQNNNEPVQGGVIDRRLGVTESKSECGTCG 77

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP 130
                +CPGHFGH++  +P+FH GF+  V +I+  +C  C+K+L   ++    + L+ ++ 
Sbjct: 78   ETALKCPGHFGHIKFVEPVFHTGFLPFVKNILSCICIRCNKLLVHRNEAAIDKLLRDKHG 137

Query: 131  KNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIE----GMKMI 186
            K R  +I   CK  T C+         +DG         GCG    K+ IE     + ++
Sbjct: 138  KQRFAEIRSICKGITHCQ---------KDGY--------GCGTPVHKIAIEKKNGNIFLL 180

Query: 187  AEYKAQRKKNDDQEQLPEPVERK-QTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
            AE     KKND+ ++  E  +R  Q L+ +    +LK +S+EDC ++G +P  +RP+ MI
Sbjct: 181  AE---PVKKNDEYDETGEFKKRSPQILSPQLCYDILKSVSNEDCIIMGFDPDKSRPEDMI 237

Query: 246  LQVLPIPPPPVRPS------------DDLTHQLAMIIRHNENLRRQERNGAPA-HIISEF 292
            +   P+PP  VRPS            DDLTH+L  II++NENL+  + +G+   + +++ 
Sbjct: 238  IVNFPVPPVQVRPSIKMEILSSSTMDDDLTHKLVDIIKNNENLKNSKGDGSLVKYSVNDD 297

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
              LLQ+H+AT+F N++ G PR+ Q++ +  K + SRL+ KEGRIRGNLMGKRVD S RTV
Sbjct: 298  FMLLQYHVATFFANDISGLPRSQQKNKKLTKDLSSRLRGKEGRIRGNLMGKRVDMSGRTV 357

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA-KYIIRD 411
            IT DP I ++++G+P  IA+NLT+ E VT +NIE L +LV+ G    PG     K II +
Sbjct: 358  ITSDPNIALNEVGLPQIIAMNLTFDEIVTKHNIEYLTQLVKNGRRVYPGANFVIKSIIDN 417

Query: 412  DGQR----LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI-- 465
             G        L+Y++K+    L+ G  V+RHL +GD +LFNRQPSLHK+S+MGH+ +I  
Sbjct: 418  HGNEAKHIYHLKYVEKTI--ILKPGDIVKRHLVNGDIILFNRQPSLHKLSMMGHKCQIIE 475

Query: 466  -MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 524
             +   TFR+N+SVT PYNAD+      + +PQ+ +T AE+L +    +  VSP +++  +
Sbjct: 476  DLSLLTFRVNVSVTDPYNADWYRFSSRVEIPQTIQTVAELLLIANAARRFVSPATSKIAI 535

Query: 525  GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE-DFDGKVPQPTILKPRPLWTGKQVFNL 583
               QDTL+G    T  D  I+    M+I+M      D  +P+   +      +GK +++ 
Sbjct: 536  NAKQDTLMGSYVQTTNDMQIDCQDAMSIIMATSVKLDNTIPKTGKI------SGKDLYSQ 589

Query: 584  IIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
            IIPK +N+ R      DN       G+  +RI+ GELL G L K  +G    S+I  IW 
Sbjct: 590  IIPKGVNIIR----RKDN-------GEYQLRIKNGELLDGVLSKPEIG----SIIQKIWF 634

Query: 644  EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTI-SKAKNNVKNLI 702
            + G    + F+   Q ++  +L++  +++ I D I  +   + + + + +K K  +K++ 
Sbjct: 635  QYGSKETQNFIDDLQRMILQFLMRYGYTVSIKDMIVSSDVNKYVYEIVETKRKEALKSIT 694

Query: 703  KQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGS 762
            +       E +P     ++FE  + + L +  +E   +   +    N L   +++GS G+
Sbjct: 695  E------YENDPYIMTKDAFEITLQENLKSLSNEIQKAVMNNFDHENGLYIAISSGSSGT 748

Query: 763  FINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF 822
             +N +Q+  C+GQ  VE KRI   F +RTLP F + D  P +RGF   S++ GL P EFF
Sbjct: 749  AMNAAQIAGCIGQVIVEDKRIQKRFNNRTLPMFAQHDDSPSARGFCFGSFISGLNPMEFF 808

Query: 823  FHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
            F  M GREG+I+TA+KT++TGYIQR+LVK +EDI V+YDGTVRN+   +IQ +YG++G++
Sbjct: 809  FQVMAGREGIINTAIKTADTGYIQRKLVKMLEDIKVEYDGTVRNANDKLIQCVYGDNGIN 868

Query: 883  SVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKEL--------- 933
            +   E+Q    + +  +  DK               + QEYI D   ++++         
Sbjct: 869  T---ENQIEQKINLISANNDK---------------IRQEYIYDANELRDIAKNTNKRYT 910

Query: 934  RDVFDAEVQKLEADRYQLATEIATSGDSS------WPLPVNLKRLIWNA------QKTFK 981
             D+ +   +KL A R +L     +   SS      + LPV++++ + N            
Sbjct: 911  NDLNEKLYRKLVAMRDRLRKIQKSVNISSVAFRETYMLPVDIQQYVINIINRENRSNNDI 970

Query: 982  VDP----RRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFAS 1037
            VDP    +R  DM+       + K +E   ++  +D   ++          I L      
Sbjct: 971  VDPYYVLKRIKDMYSGS-YSKIMKYRENKSIIKKQDEARIK------FLLKIYLYDILTP 1023

Query: 1038 KRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 1097
            K+    ++L+ E F+ ++       + + V  GEM+G V AQSIGEP TQ  L +FH +G
Sbjct: 1024 KKCTNIYKLSHEEFDEIVEYFGKTIMLAKVEGGEMVGFVGAQSIGEPVTQTNLKSFHKSG 1083

Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE 1157
             + K V+ G+ R++E+++++K IKTP + +  +   ++ K+    +   L+YTT+R V E
Sbjct: 1084 -TGKTVSGGLVRVKELLSISKNIKTPVMEIVFEDKYHTDKQIVSKIASYLKYTTIRDVVE 1142

Query: 1158 ATEVWYDPDP--MGTIIEED-VEFVKSYYEMPDEDIAPEKIS--PWLLRIELNREMMVDK 1212
              +++YDPDP    +I++ D V+ +  + +   +    + IS  PW+LRI L++E M+++
Sbjct: 1143 KVDIYYDPDPNSKNSIMQRDGVDDI--FGDSQGKSGCQQDISGLPWILRIVLSKEKMIER 1200

Query: 1213 KLSM-------------------------AAVAEKINQEFDDDLTCIFNDDNADKLILRI 1247
             + M                           V EKI Q        + N DN+   I+ I
Sbjct: 1201 NVEMREIKTSFCRNWINRFEDSKGSKKEYRKVIEKITQ-----CGIVSNYDNSPVPIVHI 1255

Query: 1248 R-----------------IMNDEAPKG-----ELNDESAEDDVFLKKIESNMLTE----M 1281
            R                 I+N    KG     E N+   E  +   + + N++ +    +
Sbjct: 1256 RFDANNYNFNTLVQFQEMIINTYRIKGISGINESNNILEESYIDFDE-QGNVVNKKHFIV 1314

Query: 1282 ALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYR 1341
               G+NL  +     ++   T  N ++ I E  G+EA R A + E  + I   G + NY+
Sbjct: 1315 VTEGINLSEISQINGINLEETKCNDIVTIYETYGVEAARTAFIKEFNIAIESSGGFSNYQ 1374

Query: 1342 HLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTE 1401
            H+ IL D +T+ G L+A+ RHG N+ DT P  R SFE+TV+ LL AA F E+D++R V+ 
Sbjct: 1375 HVEILADAVTHMGGLIAVNRHGANKLDTDPFSRASFEKTVEQLLAAAAFGETDHIRSVSA 1434

Query: 1402 NIMLGQLAPIGTGDCSLYLNDEMLKNAIE 1430
             IM+G L   GTG   L L+   +KN ++
Sbjct: 1435 RIMVGNLINGGTGCFDLLLDHIKIKNTLQ 1463


>gi|371943667|gb|AEX61495.1| DNA-directed RNA polymerase subunit 1 [Megavirus courdo7]
          Length = 1502

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1540 (32%), Positives = 803/1540 (52%), Gaps = 207/1540 (13%)

Query: 15   VRMVQFGILSPDEIRQMSVVQ----IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCT 70
            +  V+F I   +++ + S +     I   E     +P  GG+ D RLG  + K +C TC 
Sbjct: 18   ITAVEFRIYGNNDVIKYSAISDPNGITVAEIQNNNEPVQGGVIDRRLGVTESKSECGTCG 77

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP 130
                +CPGHFGH++  +P+FH GF+  V +I+  +C  C+K+L   ++    + L+ ++ 
Sbjct: 78   ETALKCPGHFGHIKFVEPVFHTGFLPFVKNILSCICIRCNKLLVHRNEAAIDKLLRDKHG 137

Query: 131  KNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIE----GMKMI 186
            K R  +I   CK  T C+         +DG         GCG    K+ IE     + ++
Sbjct: 138  KQRFAEIRSICKGITHCQ---------KDGY--------GCGTPVHKIAIEKKNGNIFLL 180

Query: 187  AEYKAQRKKNDDQEQLPEPVERK-QTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
            AE     KKND+ ++  E  +R  Q L+ +    +LK +S+EDC ++G +P  +RP+ MI
Sbjct: 181  AE---PVKKNDEYDETGEFKKRSPQILSPQLCYDILKSVSNEDCIIMGFDPDKSRPEDMI 237

Query: 246  LQVLPIPPPPVRPS------------DDLTHQLAMIIRHNENLRRQERNGAPA-HIISEF 292
            +   P+PP  VRPS            DDLTH+L  II++NENL+  + +G+   + +++ 
Sbjct: 238  IVNFPVPPVQVRPSIKMEILSSSTMDDDLTHKLVDIIKNNENLKNSKGDGSLVKYSVNDD 297

Query: 293  AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
              LLQ+H+AT+F N++ G PR+ Q++ +  K + SRL+ KEGRIRGNLMGKRVD S RTV
Sbjct: 298  FMLLQYHVATFFANDISGLPRSQQKNKKLTKDLSSRLRGKEGRIRGNLMGKRVDMSGRTV 357

Query: 353  ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA-KYIIRD 411
            IT DP I ++++G+P  IA+NLT+ E VT +NIE L +LV+ G    PG     K II +
Sbjct: 358  ITSDPNIALNEVGLPQIIAMNLTFDEIVTKHNIEYLTQLVKNGRRVYPGANFVIKSIIDN 417

Query: 412  DGQR----LDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI-- 465
             G        L+Y++K+    L+ G  V+RHL +GD +LFNRQPSLHK+S+MGH+ +I  
Sbjct: 418  HGNEAKHIYHLKYVEKTI--ILKPGDIVKRHLVNGDIILFNRQPSLHKLSMMGHKCQIIE 475

Query: 466  -MPYSTFRLNLSVTSPYNADFDGDE-----------MNMHVPQSFETRAEVLELMMVPKC 513
             +   TFR+N+SVT PYNAD+               MN+H+PQ+ +T AE+L +    + 
Sbjct: 476  DLSLLTFRVNVSVTDPYNADWYRFSSRVEVSNRWLLMNIHIPQTIQTVAELLLIANAARR 535

Query: 514  IVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE-DFDGKVPQPTILKPR 572
             VSP +++  +   QDTL+G    T  D  I+    M+I+M      D  +P+   +   
Sbjct: 536  FVSPATSKIAINAKQDTLMGSYVQTTNDMQIDCQDAMSIIMATSVKLDNTIPKTGKI--- 592

Query: 573  PLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGT 632
               +GK +++ IIPK +N+ R               G+  +RI+ GELL G L K  +G 
Sbjct: 593  ---SGKDLYSQIIPKGVNIIRRKE-----------NGEYQLRIKNGELLDGVLSKPEIG- 637

Query: 633  STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTI- 691
               S+I  IW + G    + F+   Q ++  +L++  +++ I D I  +   + + + + 
Sbjct: 638  ---SIIQKIWFQYGSKETQNFIDDLQRMILQFLMRYGYTVSIKDMIVSSDVNKYVYEIVE 694

Query: 692  SKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNL 751
            +K K  +K++ +       E +P     ++FE  + + L +  +E   +   +    N L
Sbjct: 695  TKRKEALKSITE------YENDPYIMTKDAFEITLQENLKSLSNEIQKAVMNNFDHENGL 748

Query: 752  KAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENS 811
               +++GS G+ +N +Q+  C+GQ  VE KRI   F +RTLP F + D  P +RGF   S
Sbjct: 749  YIAISSGSSGTAMNAAQIAGCIGQVIVEDKRIQKRFNNRTLPMFAQHDDSPSARGFCFGS 808

Query: 812  YLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 871
            ++ GL P EFFF  M GREG+I+TA+KT++TGYIQR+LVK +EDI V+YDGTVRN+   +
Sbjct: 809  FISGLNPMEFFFQVMAGREGIINTAIKTADTGYIQRKLVKMLEDIKVEYDGTVRNANDKL 868

Query: 872  IQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIK 931
            IQ +YG++G+++   E+Q    + +  +  DK               + QEYI D   ++
Sbjct: 869  IQCVYGDNGINT---ENQIEQKINLISANNDK---------------IRQEYIYDANELR 910

Query: 932  EL---------RDVFDAEVQKLEADRYQLATEIATSGDSS------WPLPVNLKRLIWNA 976
            ++          D+ +   +KL A R +L     +   SS      + LPV++++ + N 
Sbjct: 911  DIAKNTNKRYTNDLNEKLYRKLVAMRDRLRKIQKSVNISSVAFRETYMLPVDIQQYVINI 970

Query: 977  ------QKTFKVDP----RRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLF 1026
                       VDP    +R  DM+       + K +E   ++  +D   ++        
Sbjct: 971  INRENRSNNDIVDPYYVLKRIKDMYSGS-YSKIMKYRENKSIIKKQDEARIK------FL 1023

Query: 1027 FNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1086
              I L      K+    ++L+ E F+ ++       + + V  GEM+G V AQSIGEP T
Sbjct: 1024 LKIYLYDILTPKKCTNIYKLSHEEFDEIVEYFGKTIMLAKVEGGEMVGFVGAQSIGEPVT 1083

Query: 1087 QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCA 1146
            Q  L +FH +G + K V+ G+ R++E+++++K IKTP + +  +   ++ K+    +   
Sbjct: 1084 QTNLKSFHKSG-TGKTVSGGLVRVKELLSISKNIKTPVMEIVFEDKYHTDKQIVSKIASY 1142

Query: 1147 LEYTTLRSVTEATEVWYDPDP--MGTIIEED-VEFVKSYYEMPDEDIAPEKIS--PWLLR 1201
            L+YTT+R V E  +++YDPDP    +I++ D V+ +  + +   +    + IS  PW+LR
Sbjct: 1143 LKYTTIRDVVEKVDIYYDPDPNSKNSIMQRDGVDDI--FGDSQGKSGCQQDISGLPWILR 1200

Query: 1202 IELNREMMVDKKLSM-------------------------AAVAEKINQEFDDDLTCIFN 1236
            I L++E M+++ + M                           V EKI Q        + N
Sbjct: 1201 IVLSKEKMIERNVEMREIKTSFCRNWINRFEDSKGSKKEYRKVIEKITQ-----CGIVSN 1255

Query: 1237 DDNADKLILRIR-----------------IMNDEAPKG-----ELNDESAEDDVFLKKIE 1274
             DN+   I+ IR                 I+N    KG     E N+   E  +   + +
Sbjct: 1256 YDNSPVPIVHIRFDANNYNFNTLVQFQEMIINTYRIKGISGINESNNILEESYIDFDE-Q 1314

Query: 1275 SNMLTE----MALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
             N++ +    +   G+NL  +     ++   T  N ++ I E  G+EA R A + E  + 
Sbjct: 1315 GNVVNKKHFIVVTEGINLSEISQINGINLEETKCNDIVTIYETYGVEAARTAFIKEFNIA 1374

Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
            I   G + NY+H+ IL D +T+ G L+A+ RHG N+ DT P  R SFE+TV+ LL AA F
Sbjct: 1375 IESSGGFSNYQHVEILADAVTHMGGLIAVNRHGANKLDTDPFSRASFEKTVEQLLAAAAF 1434

Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIE 1430
             E+D++R V+  IM+G L   GTG   L L+   +KN ++
Sbjct: 1435 GETDHIRSVSARIMVGNLINGGTGCFDLLLDHIKIKNTLQ 1474


>gi|120561164|gb|ABM26977.1| RNA polymerase II largest subunit [Nosema apis]
          Length = 728

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 393/771 (50%), Positives = 513/771 (66%), Gaps = 65/771 (8%)

Query: 94  FMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEI 153
           ++  V  I+ SVCF CSKI  D+         KI  P   L  + + CK+KT CEG +  
Sbjct: 1   YLNKVKKILESVCFYCSKIKVDK---------KILKPD--LNSVWNYCKSKTTCEGENTP 49

Query: 154 DVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLT 213
           D               GCG +QP +  EG+ ++A  K +           E  + K  L 
Sbjct: 50  D------------GYTGCGNKQPLIKKEGLGLVAFMKGE-----------ENSDGKVILN 86

Query: 214 AERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLT 263
            ERVL +LK+IS++D   +G +   ++P+W+IL VL +PPP VRPS          DDLT
Sbjct: 87  GERVLSILKKISEQDANYMGFDFVNSKPEWLILTVLLVPPPSVRPSIVMEGMLRAEDDLT 146

Query: 264 HQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIK 323
           H+LA II+ N  L++ E  GAP H+I ++ QLLQFH+AT  DN+L GQP+A Q+SGRPIK
Sbjct: 147 HKLADIIKANTYLKKYELEGAPGHVIRDYEQLLQFHMATMVDNDLSGQPQALQKSGRPIK 206

Query: 324 SICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPY 383
           SI +RLK KEGR+RGNLMGKRVDFSAR+VITPD  I++ +LGVP  IA   T+PE +T Y
Sbjct: 207 SISARLKGKEGRVRGNLMGKRVDFSARSVITPDANISLIELGVPVEIAKIHTFPEAITSY 266

Query: 384 NIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGD 443
           NI +L ELV  GP+  PG   A Y+IR DGQR+DL++    SD  LE GY VERH+ +GD
Sbjct: 267 NIHKLSELVSNGPNEYPG---ANYVIRSDGQRIDLKF--NRSDIKLEEGYIVERHMQNGD 321

Query: 444 FVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAE 503
            VLFNRQPSLHKMS+MGH +++M   TFRLNLSVT+PYNADFDGDEMN+H+PQS  +RAE
Sbjct: 322 IVLFNRQPSLHKMSMMGHYVRVMEGKTFRLNLSVTTPYNADFDGDEMNLHMPQSHNSRAE 381

Query: 504 VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFD--- 560
           + EL +V K +++PQ+NRP+MGIVQDTL G R  T RD+F +K   M +L++  D +   
Sbjct: 382 LEELCLVSKQVLTPQANRPIMGIVQDTLTGLRLFTLRDSFFDKRETM-LLLYSVDLEKYE 440

Query: 561 ----GKVPQ----PTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTL 612
               G + +    P I  P+  WTGKQ+ + I+P  I  F   +   D ++ +    D  
Sbjct: 441 NLKEGGICEFMNXPAISYPKXYWTGKQIISFILPDII--FNGNSNEFD-EEDLENVKDLK 497

Query: 613 VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ-NAFS 671
           + +  GELLSG L KKT+G + G  IH+I  + G +    F    Q L+N ++   N FS
Sbjct: 498 IYLRNGELLSGILDKKTVGATQGGFIHIIANDFGSERVTAFFDDVQKLINKFITXINIFS 557

Query: 672 IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
           +GIGD +AD  TM  + ++I  AK  V ++IK+A   SLE  PG +M ESFE++VN +LN
Sbjct: 558 MGIGDAVADQDTMFYVKESIESAKEKVXDIIKKAHKNSLERLPGMSMKESFESQVNHILN 617

Query: 732 TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
            ARD +G+S QKSL+ SNNLK MV +GSKGSFINISQ+ ACVGQQNVEGKRIPFGF  RT
Sbjct: 618 KARDVSGTSTQKSLNLSNNLKTMVLSGSKGSFINISQVMACVGQQNVEGKRIPFGFKYRT 677

Query: 792 LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
           LPHF K+DY  +SRGFVENSY++GL+P+EF+FHAMGGREGLIDTA+KT+ET
Sbjct: 678 LPHFLKEDYSGKSRGFVENSYVKGLSPEEFYFHAMGGREGLIDTAIKTAET 728


>gi|325091897|gb|EGC45207.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
          Length = 1456

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1460 (33%), Positives = 767/1460 (52%), Gaps = 144/1460 (9%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPK---PGGLSDPRLGTIDRKMKCETCTA 71
            ++ ++FG+LS  +I   +VV++   +  +    +   P G  D R+G   +   C+TC  
Sbjct: 24   IKEIKFGVLSTQDIVSQAVVEVSDRKLFDLDNDRAVAPHGPLDGRMGISSKSGTCDTCGG 83

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALK---I 127
             +  C GHFGH++L  P FH+G+ K V+SI++ +C  CS IL  E + + F + L+   I
Sbjct: 84   ALQVCSGHFGHVKLVLPAFHVGYFKRVISILQEICKECSHILLPETERRAFLRELRRPGI 143

Query: 128  RNPKNR--LKKILDACKNKTKCEGGDEID-VPGQDGEEPLKKNKGGCGAQQPKLTIEGM- 183
             N +     KKI + C+    C   + ++ V  + G   LK       A     +++ + 
Sbjct: 144  DNLRRMQIAKKINERCRKTRTCYKCNAVNGVVKKAGTSALKITHEKFRAFNASTSVKKIP 203

Query: 184  ---KMIAE--YKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKY 238
               K++ +  ++  +K N D ++  +       L   RVL + + +S+EDC+LL LNP+ 
Sbjct: 204  PPSKVVFDKSFEEAKKSNPDIDKHFKKAH--DDLHPLRVLRLFRSVSNEDCELLSLNPEE 261

Query: 239  ARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
            ARP+  + Q +P PP  +RPS         DDLT +L  II+ N NL+     GAP   I
Sbjct: 262  ARPEVFLWQYVPAPPVCIRPSVGQEAASTEDDLTAKLGDIIQSNINLKNALIKGAPVQTI 321

Query: 290  SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
             E    +Q  +A Y ++++PG  +A    G+PI+  C RLK K+GR RGNL GKRVDFS 
Sbjct: 322  IECWDYMQLQLAVYINSDVPGLQKAD--FGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 379

Query: 350  RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
            RTVI+PDP + ++++ VP  +A+N+TYPE VT YN E+L++ +  G    PG   A Y++
Sbjct: 380  RTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG---ANYVL 436

Query: 410  RDDGQ-RLDLRYLK-KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
            +     +++L++       + LE G  VERH+ DGD VLFNRQPSLHK+SI+ H  K+ P
Sbjct: 437  KKSQNFKMNLKFGNPNLVANELEEGDIVERHIEDGDIVLFNRQPSLHKLSILSHFAKVRP 496

Query: 468  YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
            + TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE +ELM V   + +P++  P++  +
Sbjct: 497  HRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGEPIISAI 556

Query: 528  QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG--KVPQPTILKPRPLWTGKQVFNLII 585
            QD +     ++ +D F ++  F +I ++  + D    +P P++LKP+ LWTGKQVFN+++
Sbjct: 557  QDFITAAYLLSSKDVFYDRKTFTHICLYMLESDTLFDLPPPSVLKPQILWTGKQVFNVLM 616

Query: 586  ------PKQINLFRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGTLCKKTLGTST-G 635
                  P  INL   A       KG    L A D  + I   E++ G + K T+G+    
Sbjct: 617  RPNKQSPVLINL-DAACREFKAPKGTPRDLDANDGWLCIRNSEIMCGVMDKSTIGSGKKD 675

Query: 636  SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAK 695
            S+ +V+  + GPD A + +     L   WL    FSIGI D     K +E  +  +  A 
Sbjct: 676  SVFYVMLRDFGPDVASEGMNRLSRLSARWLTNLGFSIGITDVYPGEKLLEEKHHIVEHAY 735

Query: 696  NNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMV 755
                 +I+  ++  LE  PG     + EN ++ +L+  R +AG      LS  N+   M 
Sbjct: 736  AQCDEVIQLFKNGKLEKAPGCDEQMTMENAISGLLSKVRQQAGEICIAELSRWNSPLIMA 795

Query: 756  TAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRG 815
            T+GSKGS IN++QM A VGQQ +  +R+  GF DRTLPHF K    P ++GFV NS+  G
Sbjct: 796  TSGSKGSDINVAQMVALVGQQIIGNQRVQDGFQDRTLPHFPKHARQPPAKGFVRNSFFSG 855

Query: 816  LTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFL 875
            LTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD TVRNS  +++QF 
Sbjct: 856  LTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTRYDDTVRNSSSNIVQFQ 915

Query: 876  YGEDGMDSVWIESQTLDSLKMKKSEFDKAF------RFEMDEENWNPNYMLQEYIDDLKT 929
            YG+D +D V +E       + K   FD+ F       F+  ++   P        D++ T
Sbjct: 916  YGDDKLDPVDMEG------RAKPVHFDRTFTHAEVTTFDNSDKGLLP--------DEIIT 961

Query: 930  IKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSD 989
            +   +++   E  KL   R+ L                  K+L +N +    +D      
Sbjct: 962  L--CQNLLAPERAKLA--RFDLLG----------------KKLEYNDRSDHGID------ 995

Query: 990  MHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTRE 1049
                ++  A D LQ        ED +  +A+K  ++      R     K V+   +++  
Sbjct: 996  ----QLESARDFLQSI------EDYVCAKAEKLRSIDSGTKQR----GKGVIHTAKVSTR 1041

Query: 1050 AFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPR 1109
            A    I    +++ ++ V PG  +G V AQSIGEP TQMTL TFH+AGV+  ++T GVPR
Sbjct: 1042 ALTSFITACLTKYKRAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPR 1101

Query: 1110 LREIINVAKKIKTPSLSVFLKPGVNSTKERAKN-VQCALEYTTLRSVTEATEVWYDPDPM 1168
            ++EIIN +K+I TP ++  L   VN    RA   V+  +E T +R +     ++Y     
Sbjct: 1102 IKEIINASKEISTPVITCEL---VNKQDLRAAQIVKGRVEKTFVRDI-----IYY----- 1148

Query: 1169 GTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFD 1228
               IEED    ++Y  +    I    I    L + L   +M  KK      A+   + F 
Sbjct: 1149 ---IEEDWTGNEAYINIK---IDFSTIQNLQLELTLQDILMAIKKHKRFKSADLKFRSFG 1202

Query: 1229 DDLTCIFNDDNADKLIL--------------RIRIMNDEAPKGELNDESAEDDVFLKKIE 1274
              +  IF D    +  L              R++ +    P  ++          ++  E
Sbjct: 1203 SHIH-IFVDQQTTRTALSKTEEAATGADPYIRLKHLKRLIPNIQVIGHPQCARAIIRTDE 1261

Query: 1275 SNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1334
            +N    + + G  L   M  + ++   T +N+++E   VLGIEA R  +++E+  V+   
Sbjct: 1262 TNTTNTLLVEGYGLRDCMTTDGINGHHTRTNNIMETRAVLGIEAARTTIVEEIGEVMK-- 1319

Query: 1335 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1394
               ++ RH+ +L D MTY+G ++ ITR G+ +     +   SFE+T D L DA     +D
Sbjct: 1320 DMAIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTD 1379

Query: 1395 YLRGVTENIMLGQLAPIGTG 1414
             + GV+E I++G+   +GTG
Sbjct: 1380 LIEGVSECIIVGKSVSLGTG 1399


>gi|429851154|gb|ELA26368.1| DNA-directed RNA polymerase iii largest [Colletotrichum
            gloeosporioides Nara gc5]
          Length = 1456

 Score =  754 bits (1947), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 506/1481 (34%), Positives = 769/1481 (51%), Gaps = 165/1481 (11%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHG---ETTERGKPKPGGLSDPRLGTIDRKMKCETCT 70
            + + ++FGI S  +I   +V+++      +  +   P   G  DPRLGT  +  KC TC 
Sbjct: 21   RFKGIKFGIQSNQDIANQAVLEVSDRLLYDIEKNRAPYQHGPLDPRLGTSSKTGKCATCQ 80

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALK--- 126
             ++  C GHFGH+ L  P FHIG+++ V+ I++ +C +C K+L  E + + F + L+   
Sbjct: 81   ESLQNCTGHFGHVRLPLPAFHIGYLRFVMMILQDICKDCGKVLLTESEKRAFLKELRRPL 140

Query: 127  IRNPKNR--LKKILDACKNKTKC------EGG-DEIDVPGQDGEEPLKKNKGGCGAQQPK 177
            + N +     K+I + C+    C      +G   ++ V     ++ +  NK     + P 
Sbjct: 141  LDNLRRSQICKRINEQCRKVKNCMYCGSVQGQIRKVGVLKLAHDKFVTYNKSTSAKKVPP 200

Query: 178  LTIEGMKMIAEYKAQRKKNDD-QEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
             +   +K    +   RK N +  + L + +E    L   RVL + K IS  DC+LLGL+P
Sbjct: 201  ES--KIKFDESFSEARKNNAELDKHLRKAMEDMNPL---RVLNLFKMISPTDCELLGLDP 255

Query: 237  KYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAH 287
               RP+  I Q LP PP  +RPS         DD+T +LA I+  +  +R   + G+P  
Sbjct: 256  AEGRPEMFIWQFLPAPPVCIRPSVAQDNASNEDDITTKLADIVWVSGMIRSALQKGSPIQ 315

Query: 288  IISEFAQLLQFHIATYFDNELPG--QPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
             I E  + LQ  +A Y ++++PG  QP      G+ ++  C RLK K+GR RGNL GKRV
Sbjct: 316  TIMEQWEYLQLQVAMYVNSDVPGLQQPGF----GKAVRGFCQRLKGKQGRFRGNLSGKRV 371

Query: 346  DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
            DFS RTVI+PDP + IDQ+ VP  +A NLTYPE V+ YNI++LKE V  GP+  PG   A
Sbjct: 372  DFSGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVSDYNIKKLKECVRNGPNIWPG---A 428

Query: 406  KYIIRDD--GQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHR 462
            + +I++D  G ++ LR+  ++     L++G  VERHL D D VLFNRQPSLHK+SIM H 
Sbjct: 429  QQVIKNDDGGYKISLRFGNRNQVAQDLKIGDVVERHLEDNDIVLFNRQPSLHKLSIMSHL 488

Query: 463  IKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRP 522
            +K+ P+ TFRLN  V  PYNADFDGDEMN+HVPQ+ E RAE + LM V   + +P++  P
Sbjct: 489  VKVRPWRTFRLNECVCGPYNADFDGDEMNLHVPQTEEARAEAINLMGVKHNLATPKNGEP 548

Query: 523  VMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV----PQPTILKPRPLWTGK 578
            V+   QD +     ++ +D F ++  F  I M     DG V    P P ILKP+ LWTGK
Sbjct: 549  VIAATQDFITAAYLLSGKDRFFDRKTFTYICMHM--MDGNVHLDLPPPAILKPQALWTGK 606

Query: 579  QVFNLII------PKQINL-FRTAAWHADNDKG-ILTAGDTLVRIEKGELLSGTLCKKTL 630
            QVF++++      P ++NL  +   + A   +   +   D  + +   E++ G + K T+
Sbjct: 607  QVFSIMMRPNKDSPVKVNLDAKCREYKARPGQCPDMDPNDGWLVVRNSEVMCGRMDKSTV 666

Query: 631  GTST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETIND 689
            G+    S+ +VI  + GPDAA   +     L    L    FSIG+GD       +E  + 
Sbjct: 667  GSGKKDSVFYVILRDFGPDAAVVTMNRLAKLCARHLTNRGFSIGVGDVFPTQLLLEKKSK 726

Query: 690  TISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESN 749
             I  A  +V  LI + +   LE   G +M E+ EN ++ +L+  R +AGS   ++LS +N
Sbjct: 727  MIQDANKDVDELIDKYKKGKLEKATGCSMEETLENSISGLLSKVRTQAGSHCIETLSRNN 786

Query: 750  NLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVE 809
                M  +GSKGS IN++QM A VGQQ + GKR+  GF DRTLPHF K+   P S+GFV 
Sbjct: 787  APLVMAKSGSKGSEINVAQMVALVGQQIIGGKRVADGFQDRTLPHFHKNAPQPPSKGFVA 846

Query: 810  NSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLG 869
            NS+  GL P EF FHAM GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD TVR S G
Sbjct: 847  NSFYSGLLPTEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDDTVRTSGG 906

Query: 870  DVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFR------FEMDEENWNPNYMLQEY 923
             ++QF +G D +D V +E+        K   FD+ F       +  DE    P+ +++ Y
Sbjct: 907  GIVQFQFGADKLDPVDMEASA------KPVNFDRTFSHAENLTWNNDEAALLPDEIVK-Y 959

Query: 924  IDDLKTIKELR---------DVFDAEVQKLE-ADRYQLATEIATSGDSSWPLPVNLKRLI 973
             D + +++  R         DV D + ++ +  D ++ A +   S +S      N  R  
Sbjct: 960  CDSMLSVERARYPRKALVGDDVLDYDNEEDKFTDEHEGARDFLRSLESYVAGRANKLR-- 1017

Query: 974  WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
                                       ++ E   +  G + + V+  ++      +  + 
Sbjct: 1018 ---------------------------RVMELTGLTAGAESMEVDVDES-----EMKAKK 1045

Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTF 1093
             FA K V K    T   F  +  E   ++ ++ V PG  +G V AQSIGEP TQMTL TF
Sbjct: 1046 AFADK-VAKVSETTLRMFIRLCLE---KYKKAHVEPGHAVGAVGAQSIGEPGTQMTLKTF 1101

Query: 1094 HYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLR 1153
            H+AGV+  ++T GVPR++EIIN +K I TP ++  L    N     A+ V+  +E T + 
Sbjct: 1102 HFAGVAGMSITQGVPRIKEIINASKTISTPVITCPLVQ--NRELTAARIVKARIEKTYVE 1159

Query: 1154 SVTEATE-VWY----------DPDP---------MGTIIEEDVEFVKSYYEMPDEDIAPE 1193
             +    E  W+          D D          +G + E   +  K      D  I P 
Sbjct: 1160 DILSYIEDEWFADSGNVVLQVDMDALSNMQLGIGLGDVAEAICKHKKMKISRQDMHIGPG 1219

Query: 1194 KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDE 1253
            +I    +R+ L+      + +    V                 D++ D L++R   +   
Sbjct: 1220 RIE---IRVRLDESAASKRSVKAKPV-----------------DEHGD-LLVRANYLRRT 1258

Query: 1254 APKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEV 1313
             P   ++         ++  E    T + + G  L   M  E V+ RR  SN+++E  +V
Sbjct: 1259 IPTVSISGYPEATRAIIQTSEQETHTVL-VEGYGLQKCMNTEGVEGRRVKSNNVMECRDV 1317

Query: 1314 LGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMM 1373
            LGIEA R  +  E+  V+   G  ++ RH+ +L D MTY+G ++ ITR G+++     + 
Sbjct: 1318 LGIEAARTTIAHEIGEVMGDMG--IDPRHMQLLADVMTYKGEVLGITRFGLSKMRDSVLQ 1375

Query: 1374 RCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
              SFE+T D L +AA   ++D + GV+E I++GQ   +GTG
Sbjct: 1376 LASFEKTPDHLFEAAAGMKTDQIEGVSECIIMGQTMSVGTG 1416


>gi|50309797|ref|XP_454912.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49644047|emb|CAG99999.1| KLLA0E21253p [Kluyveromyces lactis]
          Length = 1457

 Score =  754 bits (1946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/1489 (34%), Positives = 768/1489 (51%), Gaps = 150/1489 (10%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCT 70
            K++ + F  LS  +I   S V+I   +    + G+  K GG  DPR+G    + +C TC 
Sbjct: 12   KIKGISFSALSAADIVSQSEVEISTRDLFDLDNGRSAKEGGALDPRMGVSSSQAECTTCH 71

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP 130
             N+A C GHFGH++LA P+FH+G+ K  + I++SVC  C  +L  E+D K K   ++R P
Sbjct: 72   GNLASCHGHFGHIKLALPVFHVGYFKATIQILQSVCKGCGALLLSEED-KRKFLTELRRP 130

Query: 131  -------KNRLKKILDACKNKTKCEGGDEID-----VPGQDGEEPLKKNKGGCGAQQPKL 178
                    N LKKILD CK + +C    E++          G   LK           K 
Sbjct: 131  GMDNLRRMNILKKILDQCKKQRRCFECGELNGVVKKAAAGSGSAALKIIHDTFRWVGKKS 190

Query: 179  TIEGMKMIAEYKAQRKKNDDQEQLPEPVER-KQTLTAERVLGVLKRISDEDCQLLGLNP- 236
              E  + I ++K   + N + E+    V+R    L   +VL + K+I   DC+LLG++  
Sbjct: 191  APEKEQWIGDWKQVLENNPELERY---VKRCMDDLNPLKVLNLFKQIKPNDCELLGIDST 247

Query: 237  -KYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGA 284
             K  RP+  I + LP PP  +RPS           DDLT +L  I+  +  ++     G 
Sbjct: 248  SKSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLEKGI 307

Query: 285  PAHIISEFAQLLQFHIATYFDNE------LPGQPRATQRSGRPIKSICSRLKAKEGRIRG 338
              + + E    LQ  +A Y +++      LPG   ++    +PI+  C RLK K+GR RG
Sbjct: 308  SINNMMEQWDYLQLAVAMYINSDSVNPSMLPG---SSGTKSKPIRGFCQRLKGKQGRFRG 364

Query: 339  NLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHP 398
            NL GKRVDFS RTVI+PDP ++ID++ VP  +A  LTYPE VT YN  +L++LV  GP  
Sbjct: 365  NLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKV 424

Query: 399  PPGKTGAKYIIR-DDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKM 456
             PG   A Y+++ ++  R +LRY  +      L+ G  VERH+ DGD VLFNRQPSLH++
Sbjct: 425  HPG---ANYLLKKNEDARRNLRYGDRVKLAKQLQYGDVVERHIEDGDVVLFNRQPSLHRL 481

Query: 457  SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 516
            SI+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   +++
Sbjct: 482  SILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLT 541

Query: 517  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED----FDGKVPQPTILKPR 572
            P+S  P++   QD + G   I+ +D+F ++     +L    D    FD  +P P+I+KP 
Sbjct: 542  PKSGEPIIAATQDFITGSYLISHKDSFFDRAQLTQLLSMMSDSNLQFD--IPPPSIMKPH 599

Query: 573  PLWTGKQVFNLII------PKQINLFRTAAWHADNDKGI----------LTAGDTLVRIE 616
             LWTGKQVF+L+I      P  INL       A N   +          ++  D  V I 
Sbjct: 600  YLWTGKQVFSLLIKPSRKSPVVINL------DAKNKVYLPPPKKEYPNEMSQNDGFVLIR 653

Query: 617  KGELLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 675
               +LSG + K  LG     S+ + I  + GP+ A + +     L   +L    FSIGI 
Sbjct: 654  GSNILSGVMDKSVLGDGKKHSVFYTILRDYGPNEAAQAMNRMAKLCARYLGNRGFSIGIN 713

Query: 676  DTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARD 735
            D    +   +     +  A      LI       LE +PG    ++ E K+  +L+  R+
Sbjct: 714  DVTPGSDLKQKKEQMVESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVRE 773

Query: 736  EAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHF 795
            E G    + L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHF
Sbjct: 774  EVGEVCIRELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 833

Query: 796  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 855
             K+   P+S+GFV NS+  GL+P EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED
Sbjct: 834  PKNSKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLED 893

Query: 856  IMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEEN-- 913
            +  +YD TVR S   ++QF YG DG+D + +E      +   +S +  A    +++ +  
Sbjct: 894  LSCQYDNTVRTSSNGIVQFTYGGDGLDPLDMEGNA-QPVNFNRS-WTHANNLTLNDNSPG 951

Query: 914  -------WNPNYMLQEYIDDLKTI----KELR---DVFDAEVQKLEADR--YQLATEIAT 957
                      N +LQ   + LK      +ELR   +  D  + + +A+R  YQ   E  T
Sbjct: 952  LLPYQIIAETNVILQPLENKLKRYDNIGQELRKEDEHKDEYIDQFDAERSFYQSLREFMT 1011

Query: 958  SGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGED--PL 1015
                     + L  L    ++  K               E VD+  E L+    ++  P 
Sbjct: 1012 EK------ALTLASL--RGERGLK---------------ELVDEPAEELREFNWDENVPA 1048

Query: 1016 SVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGC 1075
            S+    N     + +L   F S  + K HR                   + V PG  +G 
Sbjct: 1049 SITIALNQLCKISKILVQKFLSIAISKYHR-------------------ARVEPGTAVGA 1089

Query: 1076 VAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNS 1135
            + AQSIGEP TQMTL TFH+AGV++ NVTLGVPR++EIIN +K I TP ++  L   VN 
Sbjct: 1090 IGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVL---VND 1146

Query: 1136 TKER-AKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPE 1193
              ER A+ V+  +E T L  V+   +  Y  +     I+ D E + K   E+  EDI   
Sbjct: 1147 NDERAARVVKGRVEKTLLSDVSFYVQDIYRDNMAFLQIKIDSETIEKLQLELTLEDIVVA 1206

Query: 1194 KISPWLLRIELNREMMVDK-KLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMND 1252
                  L+I  N   ++ K K+++A  ++  + +    ++    +   +++  R++ +  
Sbjct: 1207 IAKAPKLKIGTNDISIIGKDKINIAVSSDGKSMK---SISTAMKEPEPNEVFYRMQQLRR 1263

Query: 1253 EAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIE 1312
              P   +   S      +  I  +   E+ + G  L  VM  + V   +T +NH++E+ +
Sbjct: 1264 ALPHIVVKGFSDISRAVI-NIRDDGKRELLVEGYGLRDVMTTDGVIGSKTKTNHILEVYD 1322

Query: 1313 VLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPM 1372
            VLGIEA R  +++E+   +S  G  V+ RH+ +L D MTY+G ++ ITR G+ +     +
Sbjct: 1323 VLGIEAARSCIINEIDYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLAKMRDSVL 1382

Query: 1373 MRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLN 1421
               SFE+T D L DAA + ++D + GV+E I+LGQ   IGTG   +  N
Sbjct: 1383 QLASFEKTTDHLFDAAFYMKNDAVEGVSECIILGQTMSIGTGSFKVVKN 1431


>gi|440634119|gb|ELR04038.1| hypothetical protein GMDG_06549 [Geomyces destructans 20631-21]
          Length = 1478

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 485/1460 (33%), Positives = 749/1460 (51%), Gaps = 119/1460 (8%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHG---ETTERGKPKPGGLSDPRLGTIDRKMKCETCT 70
            + + ++FG+ S  +I    V+++      +  +  KP P G  DPRLGT  +  +CETC 
Sbjct: 29   RFKELKFGVQSTRDIVNQGVLEVSDRMLYDVEKNRKPVPNGAVDPRLGTSSKTGRCETCG 88

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIRN 129
              +  C GHFGH+ LA P FHIG++K V++I++ +C +C+++L  E + + F + L+  N
Sbjct: 89   EGLNNCNGHFGHVRLALPAFHIGYLKLVIAILQEICKDCARVLLTESERRQFLKELRRPN 148

Query: 130  PKNR-----LKKILDACKNKTKCEGGDEID-------VPGQDGEEPLKKNKGGCG----- 172
              N       KKI   C+    C     ++       V     ++ L  NK         
Sbjct: 149  IDNLKRTQICKKINAQCRKAKTCPYCSAVNGQIRKTGVFKLTHDKFLAYNKSTAARKVIP 208

Query: 173  ---AQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDC 229
               A   K  +E  K  AE     KK  D             L   RVL + + I+  DC
Sbjct: 209  PEKAAFDKSFVEAKKTNAELDKHLKKAMDD------------LNPLRVLNLFRMITPTDC 256

Query: 230  QLLGLNPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQE 280
            +LLG+NP   RP+  + Q +P PP  +RPS         DDLT +L  I+  +  +R   
Sbjct: 257  ELLGINPSEGRPEMFLWQYVPAPPICIRPSVAQDGASTEDDLTSKLGDIVHISSLIRSAL 316

Query: 281  RNGAPAHIISEFAQLLQFHIATYFDNELPG--QPRATQRSGRPIKSICSRLKAKEGRIRG 338
            + G P   I E  + LQ  IA Y ++++PG  QP      G+ I+  C RLK K+GR RG
Sbjct: 317  QKGQPIQTIMEQWEYLQLQIAMYVNSDVPGLQQPGF----GKAIRGFCQRLKGKQGRFRG 372

Query: 339  NLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHP 398
            NL GKRVDFS RTVI+PDP ++I+++ +P  +A N+TYPE V   NI +L+E ++ GP  
Sbjct: 373  NLSGKRVDFSGRTVISPDPNLSIEEVAIPILVATNMTYPERVHDRNIHKLRECIKRGPGK 432

Query: 399  PPGKTGAKYIIRDDGQRLDLRYLKKS-SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 457
             PG    +   + DG+++ L++  +  + + L +G  VERHL DGD +LFNRQPSLHK+S
Sbjct: 433  WPGANIVEK--KMDGRKVSLKHADREYTANTLRVGDVVERHLEDGDIILFNRQPSLHKLS 490

Query: 458  IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 517
            IM H +K+ P+ TFR N  V  PYNADFDGDEMN+HVPQ+ E R E + LM V   + +P
Sbjct: 491  IMSHYVKVRPWRTFRFNECVCGPYNADFDGDEMNIHVPQTEEARTEAINLMGVKNNLCTP 550

Query: 518  QSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED--FDGKVPQPTILKPRPLW 575
            +S  P++   QD +     ++ ++ F ++  F ++ M+  D   D  +P P I+KP  LW
Sbjct: 551  KSGEPIISATQDFITAAYLLSSKENFFDRKTFAHLCMYMVDGKMDIDIPPPAIIKPEALW 610

Query: 576  TGKQVFNLII------PKQINL------FRTAAWHADNDKGILTAGDTLVRIEKGELLSG 623
            TGKQVF++++      P ++NL      ++  A  A +    +   D  + +   E++ G
Sbjct: 611  TGKQVFSVLMRPNKTSPVKVNLDAKCRDYKAVAGQAPD----MDPNDGWLVVRNSEVMCG 666

Query: 624  TLCKKTLGTSTGSLI-HVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAK 682
             + K T+G+     I + I  + GPD A   +     L   +L    FSIGI D      
Sbjct: 667  RMDKTTVGSGKKDCIFYTILRDFGPDHAVLAMNRLAKLSARYLTNRGFSIGISDVYPSKS 726

Query: 683  TMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQ 742
              +     ++KA     +LI Q +   LE   G  M E+ ENK++ +L+  R +AG    
Sbjct: 727  LEDQKLALVTKAYAECDDLIVQFKSGKLEKATGCNMEETLENKISGILSRVRQQAGEFCI 786

Query: 743  KSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGP 802
             +LS+ N+   M  +GSKGS IN++QM   VGQQ + G R+  GF DRTLPHF K+   P
Sbjct: 787  NTLSKWNSPLIMAKSGSKGSNINVAQMVTLVGQQMISGARVADGFQDRTLPHFPKNARQP 846

Query: 803  ESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDG 862
             S+GFV NS+  GLTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +YD 
Sbjct: 847  PSKGFVRNSFFGGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSTQYDD 906

Query: 863  TVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF--EMDEENWNPNYML 920
            TVRNS G ++QF +G D +D V +E   +         FD+ +     +  +N +P  + 
Sbjct: 907  TVRNSSGGIVQFQFGADKLDPVDMEGSAV------PVHFDRTYTHAESLTWDNNDPALLP 960

Query: 921  QEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTF 980
             E       +         E +K +  R  L               ++ ++L +N Q  +
Sbjct: 961  YEITAQCAAL--------LEPEKAKLTRRGL---------------LHNEKLEYNDQSDY 997

Query: 981  KVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATL---FFNILLRSTFAS 1037
             +D    +     EV + V +L ++L        L  E  +N +L    +N         
Sbjct: 998  AIDELESARGFVSEVSKYVGRLAQKLSQARKRAGLP-ELTENPSLSDIHYNPATEDQTRR 1056

Query: 1038 KRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 1097
             ++ +  +++       I    +++L++ V PG  +G V AQSIGEP TQMTL TFH+AG
Sbjct: 1057 NQMDRVAKVSEATLAKFIELCLTKYLKAHVEPGHAVGAVGAQSIGEPGTQMTLRTFHFAG 1116

Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE 1157
            V+  ++T GVPR++EIIN +K I TP ++  L+   +    R   V+  +E T +     
Sbjct: 1117 VAGMSITQGVPRIKEIINASKLISTPVMTCPLENPHDIVAARV--VKGRIEKTYISDCIR 1174

Query: 1158 ATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSM 1216
              E  +        +  DV+ V + + ++   DIA   +    L+I  +   ++   + +
Sbjct: 1175 FVEDMWSAKSATICLSVDVQGVSEMHLDITTADIANAILRNKKLKIPNDALDIIGDDIFV 1234

Query: 1217 AAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELND--ESAEDDVFLKKIE 1274
                      F        + D A  L+LR+  +    P   ++   E+    +   K E
Sbjct: 1235 RVAHGSNTGTFGRGGAAKKSTDEASDLLLRVNYLKRTIPTIPVSGYPEATRAIIQQDKGE 1294

Query: 1275 SNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1334
              +  E    G  L A M  E V   R T+N ++E  +VLGIEA R  + +E+  V+S  
Sbjct: 1295 HTVHVE----GYGLRACMTTEGVIGTRVTTNSVVECNQVLGIEAARTTIANEIESVMS-- 1348

Query: 1335 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESD 1394
               ++ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T D L DAA   + D
Sbjct: 1349 EMNIDPRHMQLLADVMTYKGEILGITRFGLSKMRDSVLQLASFEKTPDHLFDAAAGMKKD 1408

Query: 1395 YLRGVTENIMLGQLAPIGTG 1414
             + GV+E I++GQ   +GTG
Sbjct: 1409 AIEGVSECIIMGQTMSVGTG 1428


>gi|320581578|gb|EFW95798.1| DNA-directed RNA polymerase III subunit, putative [Ogataea
            parapolymorpha DL-1]
          Length = 1469

 Score =  752 bits (1942), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 513/1488 (34%), Positives = 761/1488 (51%), Gaps = 150/1488 (10%)

Query: 18   VQFGILSPDEIRQMSVVQI--------EHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
            ++FG LS  EI   S V++        +HG       P   G  D ++G   +  +C TC
Sbjct: 16   IEFGALSAAEIVAQSEVEVATRNLFDLDHGRA-----PVANGALDTKMGISSKSGECATC 70

Query: 70   TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE-DDHKFKQALK-- 126
              N+  C GHFGH++LA P+FH+G+ K+++ +++++C  CS +L DE    +F   L+  
Sbjct: 71   HGNLNTCHGHFGHIKLALPVFHVGYFKSIIQVLQTICKTCSAVLLDEASKRQFLNDLRRP 130

Query: 127  ----IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEG 182
                +R  K  LKK+LD  K + +C     +     +G   +KK   G G    K+  + 
Sbjct: 131  GLDNLRRMKI-LKKLLDQAKKQRRC-----LRCGALNG--VVKKAAAGAGPAALKIIHDT 182

Query: 183  MKMIAEYKAQRKKNDDQE---------QLPEPVERK-QTLTAERVLGVLKRISDEDCQLL 232
             + + +  A  K   D++          L +  +R    L   +VL + K++   DC+LL
Sbjct: 183  FRWVGKKGADEKLQWDEDFEDLFDENPDLEKFFKRCFDDLNPLKVLNLFKQVDTSDCELL 242

Query: 233  GLNP-KYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQE 280
            G++P K  RP+  + + LP PP  +RPS           DDLT +L  I+  +  +R   
Sbjct: 243  GIDPSKGGRPEMYLWRYLPAPPVCIRPSVVMTDTNTSNEDDLTVKLTEIVWTSSMIRAGI 302

Query: 281  RNGAPAHIISEFAQLLQFHIATYFDNELPGQPRA-----TQRSGRPIKSICSRLKAKEGR 335
              G   + + E    LQ  +A Y +++    P A     + +S +PI+ +C RLK K+GR
Sbjct: 303  EKGISINSLMEQWDYLQLAVAMYINSD-SASPSALSGGTSTKSAKPIRGLCQRLKGKQGR 361

Query: 336  IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 395
             RGNL GKRVDFS RTVI+PDP + ID++ VP  +A  LTYPE VT YN  +L+ L+  G
Sbjct: 362  FRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPERVTRYNKAKLQALIING 421

Query: 396  PHPPPGKTGAKYIIR--DDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPS 452
            P   PG   A Y+++  +D +R +LRY  ++     L +G  VERH+ DGD VLFNRQPS
Sbjct: 422  PDVHPG---ANYLVKKHEDVKR-NLRYGDRNKLAKQLAVGDIVERHIEDGDIVLFNRQPS 477

Query: 453  LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPK 512
            LH++SIM H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V  
Sbjct: 478  LHRLSIMSHFAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAMNLMGVKN 537

Query: 513  CIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED--FDGKVPQPTILK 570
             +++P+S  P++   QD + G   I+ +D+F ++  F  +L    D      +P P I K
Sbjct: 538  NLLTPKSGEPIIAATQDFITGSYLISNKDSFYDRATFTQMLAMMSDGALHVDIPPPAIFK 597

Query: 571  PRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGI---------LTAGDTLVRIEKGELL 621
            P  +WTGKQ+F+L+I             A N   +         ++  D  V I   ++L
Sbjct: 598  PAFMWTGKQLFSLLIRPNRQSKVVINLDAKNKTFVPPPPGMPSEMSPNDGFVVIRNSQIL 657

Query: 622  SGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIAD 680
            SG + K TLG     S+ + I  + G D A   +     L   +L    FSIGI D    
Sbjct: 658  SGVMDKSTLGDGKKHSVFYTILRDYGADEAANAMNRMAKLCARYLGNRGFSIGINDVTPG 717

Query: 681  AKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSS 740
                      +  A      LI   +   LE +PG    ++ E K+  +L+  R+E G  
Sbjct: 718  ENLKNRKEQLVEIAYRKCDELITLFKTGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEV 777

Query: 741  AQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDY 800
              K L +SN    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHF K+  
Sbjct: 778  CIKELDKSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFLKNSK 837

Query: 801  GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKY 860
             P+S+GFV NS+  GL+P EF FHA+ GREGL+DTAVKT+ETGY  RRL+K+MED+   Y
Sbjct: 838  SPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYTSRRLMKSMEDLSAGY 897

Query: 861  DGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMD--EENWNP-- 916
            D TVRNS   ++QF YG DG+D + +E      +   ++ +D AF   +D  E+   P  
Sbjct: 898  DETVRNSSNGIVQFNYGGDGLDPLDMEGDA-RPVNFNRT-WDHAFHVTLDHHEQGLYPYE 955

Query: 917  -----NYMLQEYIDDLKTIKEL-RDVFDAEVQKLE-ADRYQLATEIATSGDSSWPLPVNL 969
                 + +LQ   D L  +  L R +   + +K+E  DR+    +  +S  +        
Sbjct: 956  ALRIADSVLQPLKDRLVRVDNLGRPLAGRDAEKIEYVDRHDAERDFYSSIRAYIETKC-- 1013

Query: 970  KRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSV-EAQKNATLFFN 1028
             R I   ++   +DP        +E  EA +         PG  P+S  E ++  T    
Sbjct: 1014 -RSIARLREQRGLDP-------LLEAPEASEG--------PGTRPVSDPERERVVTQLAK 1057

Query: 1029 ILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQM 1088
            +                + RE     +     ++L++ V PG  +G + A SIGEP TQM
Sbjct: 1058 V-------------SESMIREFLRLCL----HKYLKAKVEPGTAVGAIGAHSIGEPGTQM 1100

Query: 1089 TLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCAL 1147
            TL TFH+AGV++ NVTLGVPR++EIIN +K I TP ++  L   VN   ER A+ V+  +
Sbjct: 1101 TLKTFHFAGVASMNVTLGVPRIKEIINASKVISTPIINAVL---VNDEDERAARVVKGRI 1157

Query: 1148 EYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY-YEMPDEDIAPEKISPWLLRIELNR 1206
            E T L  V    E  Y  +     ++ D+  ++    E+  + IA   +    L+I    
Sbjct: 1158 EKTILEDVAFFIEDVYKENQAYLQVKIDLHTIERLQLELTIDQIASAIVDAPKLKISRGD 1217

Query: 1207 EMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADK------------LILRI----RIM 1250
              +V K      V+E  N+      T    + +  K            L  R+    R++
Sbjct: 1218 VAIVGKNRIQVFVSETGNETGKTARTASSRESSVVKDADERERLERTSLFFRMQQLRRVL 1277

Query: 1251 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEI 1310
                 KG L D S      +  ++ +   E+ + G  L AVM  + V A RT +NH++EI
Sbjct: 1278 TKVVVKG-LPDISRA----VINVKDDGKKELLVEGYGLKAVMATDGVVAHRTKTNHVLEI 1332

Query: 1311 IEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTG 1370
             +VLGIEA R +++ E+   +   G  V+ RH+ +L D MTY+G ++ ITR G+ +    
Sbjct: 1333 FDVLGIEAARASIISEIDYTMGSHGMAVDPRHIQLLGDVMTYKGEVLGITRFGLAKMRDS 1392

Query: 1371 PMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSL 1418
             +   SFE+T D L DAA + + D + GV+E I+LGQ   IGTG   L
Sbjct: 1393 VLQLASFEKTTDHLFDAAFYMKKDLVEGVSERIILGQTMSIGTGAFKL 1440


>gi|344229980|gb|EGV61865.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Candida
            tenuis ATCC 10573]
          Length = 1453

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1494 (34%), Positives = 781/1494 (52%), Gaps = 127/1494 (8%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQIEHGET--TERGKP-KPGGLSDPRLGTIDRKMKCETCT 70
            +++ ++FG LS  EI   S V+++  +    E+G+  K  G  D ++G      +C TC 
Sbjct: 12   RIQGIEFGALSAKEIIAQSEVEVKTRDLYDLEKGRTVKEFGALDTKMGISANSSECSTCH 71

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP 130
             N+A C GHFGH+ LA P+FH+G+ K ++ I++ +C NC  IL DE   K K    +R P
Sbjct: 72   GNLASCHGHFGHIRLALPVFHVGYFKAIIQILQCICKNCGHILLDEQT-KRKYLADLRRP 130

Query: 131  -------KNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
                      LK ++D CK + +C     ++         +KK   G G    K+  +  
Sbjct: 131  YIDNLRRMKILKSVVDQCKKQRRCFKCTHVN-------GVVKKAASGAGPAALKIVHDTF 183

Query: 184  KMIAEYKAQRKKNDDQE---------QLPEPVERK-QTLTAERVLGVLKRISDEDCQLLG 233
            + + +     K+  D E         +L +  +R  + L   +VL + K+I+ ++C+L G
Sbjct: 184  RWVGKKPTPEKEVWDSEIEQVLTRNPELEKFTKRMYEDLNPLKVLHLFKQITPDECELFG 243

Query: 234  LNP-KYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNG 283
            L+P +  RP+  I + LP PP  +RPS         DDLT +L  I+  +  ++     G
Sbjct: 244  LDPSRGGRPETYIWRYLPAPPVCIRPSVMMDAQSNEDDLTVKLTEIVWTSSLIKAGIDKG 303

Query: 284  APAHIISEFAQLLQFHIATYFDNELPG---QPRATQ--RSGRPIKSICSRLKAKEGRIRG 338
               + + E    LQ  +A Y +++       P A    +S +PI+  C RLK K+GR RG
Sbjct: 304  ISINNLMEQWDYLQLSVAMYINSDAANPALMPSAGSGSKSTKPIRGFCQRLKGKQGRFRG 363

Query: 339  NLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHP 398
            NL GKRVDFS RTVI+PDP + ID++ VP  +A  LTYPE  T YN  +L++L+  GP  
Sbjct: 364  NLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKILTYPEKCTRYNRIKLQKLILSGPDV 423

Query: 399  PPGKTGAKYIIR-DDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKM 456
             PG   A Y+++ ++  + +LR+  +     +L +G  VERH+ DGD VLFNRQPSLH++
Sbjct: 424  HPG---ANYVLKQNENTKRNLRFGDRVKIAKNLHIGDVVERHIEDGDVVLFNRQPSLHRL 480

Query: 457  SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 516
            SI+ H  KI P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE + LM V   +++
Sbjct: 481  SILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNNLLT 540

Query: 517  PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED----FDGKVPQPTILKPR 572
            P+S  P++   QD + G   IT +D+F E+     +L    D    FD  +P P I+KP 
Sbjct: 541  PKSGEPIIAATQDFITGSYLITHKDSFFERASVNQLLCMMSDANLQFD--LPPPAIIKPV 598

Query: 573  PLWTGKQVFNLII-PKQ-----INLFRTAA------WHADNDKGILTAGDTLVRIEKGEL 620
             LWTGKQVF+L+I P +     INL   A        H  N+   ++  D  V I   ++
Sbjct: 599  SLWTGKQVFSLLIKPNKASNVVINLDAKAKTYIPPERHFANE---MSPNDGYVIIRGSQI 655

Query: 621  LSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIA 679
            LSG + K TLG     S+ + I  + GP  A + +     L   +L    FSIGI D   
Sbjct: 656  LSGVMDKSTLGDGKKHSVFYTILRDYGPTEAAEAMNRMSKLCARYLGNRGFSIGINDVTP 715

Query: 680  DAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGS 739
             +         + +A      LI       LE +PG    ++ E K+  +L+  R+E G 
Sbjct: 716  GSDLKNKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGE 775

Query: 740  SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDD 799
               K L   N    M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHFTK+ 
Sbjct: 776  VCIKELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNS 835

Query: 800  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 859
              P+S+GFV NS+  GLTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+  +
Sbjct: 836  KTPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQ 895

Query: 860  YDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYM 919
            YD TVRNS   ++QF YG DG+D   +E        +++ +      F   E    P  +
Sbjct: 896  YDNTVRNSSNGIVQFTYGGDGLDPFDMEGDARPVNFVRQWDHSFNITFSNREMGLLPYQV 955

Query: 920  LQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKT 979
            ++E    L+ +++    +D    ++ ++R     E     D+      +++  + + + T
Sbjct: 956  MEEVEKVLQPLEDRLIRYDNLGHQIISNR----EEYIDQNDAEREFYHSIRSFV-DKKAT 1010

Query: 980  FKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKR 1039
                 R+   + P                 P +  + VE  ++          S  A  +
Sbjct: 1011 HLAKTRQSKHLKPN-------------YTPPTDGEVFVEDNQD----------SLNAVDQ 1047

Query: 1040 VLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1099
            +LK   ++ ++ +  + +   ++ ++ V PG  +G + AQSIGEP TQMTL TFH+AGV+
Sbjct: 1048 ILK---ISAKSVDTFLKQCLYKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVA 1104

Query: 1100 AKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKE-RAKNVQCALEYTTLRSVTEA 1158
            + NVTLGVPR++EIIN +K I TP ++  L   VN   E  A+ V+  +E T L+ V   
Sbjct: 1105 SMNVTLGVPRIKEIINASKAISTPIINSVL---VNDDDEIAARVVKGRIEKTLLKDVAFH 1161

Query: 1159 TEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPE-------KISPWLLRIELNREMMV 1210
             +  Y  +     ++ D++ + K   E+  + IA         KI P  + I  +  + +
Sbjct: 1162 IQDVYKNNMAYLSVKIDLKTIEKLQLELNIDSIAQAIVNAPKLKIQPAHVSITGSDRINI 1221

Query: 1211 DKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI----RIMNDEAPKGELNDESAED 1266
               L+ + V E + +  + D       D ++ L  R+    R++ +   KG  N   A  
Sbjct: 1222 LVTLNDSKV-ESLAKSMNVDYKL---SDASNVLFFRMQHLKRMLPEICIKGLPNISRA-- 1275

Query: 1267 DVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDE 1326
               +  I  +   E+ + G  L  VM  + V   +TT+NH++E+ EVLGIEA R +++ E
Sbjct: 1276 ---VINIRDDSKKELLVEGYGLKEVMSTDGVVGTKTTTNHVLEVFEVLGIEAARSSIIGE 1332

Query: 1327 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1386
            +   +S  G  V+ RH+ +L D MTY+G ++ ITR G+++     +   SFE+T D L D
Sbjct: 1333 IDYTMSKHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFD 1392

Query: 1387 AAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGL 1440
            AA + ++D + GV+E I+LGQ   IGTG   L     +   A+  Q P+  E L
Sbjct: 1393 AAFYMKNDKVEGVSECIILGQTMSIGTGAFKLVKTSNVEPQALH-QKPTLFEDL 1445


>gi|296827068|ref|XP_002851111.1| DNA-directed RNA polymerase III largest subunit [Arthroderma otae CBS
            113480]
 gi|238838665|gb|EEQ28327.1| DNA-directed RNA polymerase III largest subunit [Arthroderma otae CBS
            113480]
          Length = 1443

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/1481 (34%), Positives = 764/1481 (51%), Gaps = 157/1481 (10%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGETTE----RGKPKPGGLSDPRLGTIDRKMKCETCT 70
            ++ + FG+LS  +I   + V+I   +  +    R   + G + DPRLG  ++   CETC 
Sbjct: 23   IKEINFGVLSNQDIISQAHVEISDRKLFDLDNNRAVARNGPM-DPRLGISNKSDTCETCG 81

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP 130
             ++ EC GHFG++ L  P FH+G+ K  + I++ +C +CSKIL  ED+ +     ++R P
Sbjct: 82   GDLQECNGHFGYVRLVLPAFHVGYFKRTIEILQDICKDCSKILLPEDERR-SYLKELRRP 140

Query: 131  K----NRL---KKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
                  R+   K+I   C+    C   + I+   +      K + G       K      
Sbjct: 141  GLDNLRRMQINKRINVRCRKTPVCYYCNAINGTVK------KASTGALKIVHDKFRAFNA 194

Query: 184  KMIAE-------------YKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQ 230
             + A+             ++  +K N D E+    V     L   RVL + +RISDEDC+
Sbjct: 195  SLSAKKIPPPSKLAFDRSFEEAKKSNPDIEKHYRRVF--DDLNPLRVLKLFRRISDEDCE 252

Query: 231  LLGLNPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQER 281
            LL LN   ARP++ + Q +P PP P+RPS         DDLT +L  I++ N NL+    
Sbjct: 253  LLSLNVDEARPEYFLWQFIPAPPVPIRPSVGQEGASTEDDLTAKLGDIVQSNLNLKMALD 312

Query: 282  NGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLM 341
             GAP   I E    +Q  IA Y ++++PG       S + I+ +C RLK K+GR RGNL 
Sbjct: 313  KGAPVQTIIECWDYMQLQIAVYINSDIPGLQNTD--SKKSIRGLCQRLKGKQGRFRGNLS 370

Query: 342  GKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPG 401
            GKRVDFS RTVI+PDP + ID++ VP  +A+N+TYPE VT YN E+L++ V  G    PG
Sbjct: 371  GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCVRNGTKTWPG 430

Query: 402  KTGAKYIIRDDGQ-RLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM 459
               A Y+I+     RL L+Y   +   + L  G  VERHL DGD VLFNRQPSLHK+SI+
Sbjct: 431  ---ANYLIKQGNSFRLFLKYGNLNMIANQLSEGDIVERHLEDGDIVLFNRQPSLHKLSIL 487

Query: 460  GHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQS 519
             H +K+ P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E R+E +ELM V   + +P++
Sbjct: 488  SHFVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARSEAMELMGVKNNLATPKN 547

Query: 520  NRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV--PQPTILKPRPLWTG 577
              P++  +QD +     ++ +D F ++  F  I +   D   ++  P P  LKP+ LWTG
Sbjct: 548  GAPIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLSMLDSSTRLELPPPATLKPQMLWTG 607

Query: 578  KQVFNLII------PKQINL---FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKK 628
            KQVF++++      P ++NL    R      D  +  L   D  + I   E+L G   K 
Sbjct: 608  KQVFSVLMRPNKDSPVKVNLDAACRQFKRVKDQPRD-LCENDGWLCIRNSEMLCGVADKS 666

Query: 629  TLGTS-TGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETI 687
            T+G     ++  VI  + GP AA + +     L   WL    FSIGI D       ++  
Sbjct: 667  TIGDGRKDNIFFVIQRDFGPAAAAEAMNRLSKLSARWLTNKGFSIGITDVYPGTGLVKLK 726

Query: 688  NDTISKAKNNVKNLIKQAQDKSLEPEPGRT-MMESFENKVNQVLNTARDEAGSSAQKSLS 746
            +  I  A     +LI +A  +  +P+ G++   ++ EN++  +LN  R +AG      LS
Sbjct: 727  DTLIDNAFKQCDDLIIKASKE--KPQKGKSDSRQTAENEITGILNKLRQQAGEYCISELS 784

Query: 747  ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRG 806
            + N    M   GSKGS IN+SQM A VGQQ++E  R+  GF DRTLPHF +      ++G
Sbjct: 785  KHNAPLIMAKCGSKGSDINVSQMVAVVGQQSIENSRVSKGFQDRTLPHFPRHSQHALAKG 844

Query: 807  FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRN 866
            FV NS+  GLTP EF FHAM GREGLIDTAVKT+ETGY+ RRL+K++ED+  +YD TVR+
Sbjct: 845  FVRNSFFSGLTPTEFLFHAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRD 904

Query: 867  SLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDD 926
            S   VIQF YG+D +D V +E+        K   F++ F    +   ++ N       + 
Sbjct: 905  SSSFVIQFQYGDDQLDPVNMEASA------KPVHFERTFT-HAESTTYDRNDRGLSADEI 957

Query: 927  LKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRR 986
            +   +EL          L  +R +LA          + L  N   L + A+  F  D   
Sbjct: 958  MALCEEL----------LAPERKKLA---------RFDLLGNT--LPYTAENDFATDQWE 996

Query: 987  PSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRL 1046
             +      + E V    E+L+ + GE+     A             +   S R LK    
Sbjct: 997  SNRDFLSSIEEFVANKAEQLRSIDGEESKGQMA----------FTHTGKLSARTLK---- 1042

Query: 1047 TREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLG 1106
               AF   I     +++++ V PG  IG + AQSIGEP TQMTL TFH+AGV+  ++T G
Sbjct: 1043 ---AF---IASCLDKYMRAHVEPGHSIGAIGAQSIGEPGTQMTLKTFHFAGVAGMSITQG 1096

Query: 1107 VPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKN-VQCALEYTTLRSVTEATEVWYDP 1165
            VPR++EIIN +K+I TP ++  L    N T  RA   V+  +E   L+ +     V+Y  
Sbjct: 1097 VPRIKEIINASKEISTPIITCEL---TNKTDMRAAEIVKGRIEKLFLKDI-----VYY-- 1146

Query: 1166 DPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQ 1225
              +  I  E   F+K   +          I    L I L + ++  KK      A+   Q
Sbjct: 1147 --IEEIRSESTSFIKIKVDFS-------TIDKLQLEITLPQILLAIKKHKAFKAADLRFQ 1197

Query: 1226 EFDDDLTCIFNDDNADKL--------------ILRIRIMNDEAPKGELND--ESAEDDVF 1269
             +   +  I+ D+ A                  +RI  +    P  ++    + A   + 
Sbjct: 1198 TYHSHIH-IYVDEGASMAGVSVSELKITGSDPYIRINYLRRILPNIQVFGYPDCARAVIR 1256

Query: 1270 L-KKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELR 1328
            + +K+ +N+L    + G  L A M  + VD  RT +NH++E+ +VLGIEA R  ++DE+ 
Sbjct: 1257 VGEKVATNILL---VEGYGLRACMTTDGVDGHRTRTNHIMEMRDVLGIEAARTTIIDEIS 1313

Query: 1329 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1388
             V+S  G  ++ RH+ +L D MTY+G ++ ITR G+ +     +   SFE+T D L DA 
Sbjct: 1314 SVMS--GMSIDPRHMQLLADVMTYKGEVLGITRFGLAKIRDSVLQLASFEKTADHLFDAG 1371

Query: 1389 VFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI 1429
                 D ++GV+E I++G+   +GTG   +  + ++L + +
Sbjct: 1372 GAGRRDAVQGVSECIIMGKTISLGTGSMEVVRDLKLLDSHV 1412


>gi|164657764|ref|XP_001730008.1| hypothetical protein MGL_2994 [Malassezia globosa CBS 7966]
 gi|159103902|gb|EDP42794.1| hypothetical protein MGL_2994 [Malassezia globosa CBS 7966]
          Length = 1376

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1444 (34%), Positives = 733/1444 (50%), Gaps = 191/1444 (13%)

Query: 47   PKPGGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVC 106
            P+ GG+ D R+G  D+   CETC   MA+C GH+G+++L  P+FH+GF K V+SI++ +C
Sbjct: 27   PRRGGVLDRRMGVSDKVSTCETCGQRMADCVGHYGYIKLVLPVFHVGFFKHVVSILQMIC 86

Query: 107  FNCSKILADEDDHKFKQ------ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDG 160
             +C+++L +E D +          L+        K +  A +    C             
Sbjct: 87   KSCARVLLEEPDRRRFLRRFRRPGLENLQRAQTFKAVNAAARKMLYCPH----------- 135

Query: 161  EEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQ-----------------EQLP 203
                      CG+    +   G+  I   K ++KK +++                 E  P
Sbjct: 136  ----------CGSTNGTVKKAGVLKIVHEKFRQKKTEEEQLEFRKTFSTAVSMGNGELAP 185

Query: 204  EPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS---- 259
               + ++ L   RVL + +RISDEDC+LL L P++ RP+  I Q + +PP  +RPS    
Sbjct: 186  HLNKAQEDLNPLRVLDLFRRISDEDCELLALKPQFGRPEEYIWQYICVPPVCIRPSVAQD 245

Query: 260  -----DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ---LLQFHIATYFDNELPGQ 311
                 DDLT +L  I+  N  ++     G+     ++  +    LQ  +A Y ++E+PG 
Sbjct: 246  GATNEDDLTVKLTEIVFTNNIIKSGLTKGSKGTTTAQLVEQWDFLQLSVALYINSEMPGV 305

Query: 312  PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIA 371
            P  +    +PI+  C RLK K+GR RGNL GKRVDFS RTVI+PDP + ID++ VP  +A
Sbjct: 306  PPMS--GHKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLAIDEIAVPERVA 363

Query: 372  LNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD-DGQRLDLRY--LKKSSDHH 428
              LTYPE V  +NIE +++ V  G    PG   A Y +   DG +  L++  ++     +
Sbjct: 364  KILTYPERVFAHNIEAMRQAVRNGTDTHPG---ANYHVNGRDGFKRFLKFPGMRDDIAAN 420

Query: 429  LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGD 488
            L +G  VERH+ DGD VLFNRQPSLHK+SIM HR KI P+ TFRLN  V SPYNADFDGD
Sbjct: 421  LRVGDIVERHIRDGDIVLFNRQPSLHKLSIMCHRAKIRPWRTFRLNECVCSPYNADFDGD 480

Query: 489  EMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDV 548
            EMNMHVPQ+ E R E L LM V   +V+P++  P++   QD +     +++R  F  +  
Sbjct: 481  EMNMHVPQTEEARTEALTLMGVKHNLVTPRNGEPIVAATQDFITAAFLLSRRGRFFTRAQ 540

Query: 549  FMNILMWWED--FDGKVPQPTILKPRPLWTGKQVFNLII------PKQINL---FRTAAW 597
            F+ I  ++ D      +P P ILKP  LWTGKQ+F+ +I      P  +NL    RT   
Sbjct: 541  FVQICSYFGDASLHIDLPPPAILKPVRLWTGKQLFSCMIRPNKQSPVLVNLEARCRTFEK 600

Query: 598  HADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGH 656
              D     ++  D  + I+  E+L G + K T+G     S+  VI  + GPDAA   +  
Sbjct: 601  PRDGHVNEMSPNDGYLVIQNSEVLCGVMDKATVGDGKKQSVFGVILRDYGPDAAVASMNR 660

Query: 657  TQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR 716
                   WL    FS+GIGD        ET +  +  A    ++LI+ A+   LE  PG 
Sbjct: 661  LAKTCARWLSNQGFSLGIGDVTPGQHLRETKDRNVEIAYRQCRDLIELAKRGKLENLPGC 720

Query: 717  TMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 776
               ++ E+K++ VL++ R + G      LS  N    M   GSKGS IN++QM ACVGQQ
Sbjct: 721  DQEQTLESKISGVLSSVRSDVGEICMTELSRHNAALLMSVCGSKGSKINVAQMVACVGQQ 780

Query: 777  NVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 836
             + G R+P GF DR+LPHF K    P S+GFV NS+  GL P EF FHA+ GREGL+DTA
Sbjct: 781  IISGSRVPNGFQDRSLPHFPKKSKDPPSKGFVRNSFFSGLEPTEFLFHAISGREGLVDTA 840

Query: 837  VKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKM 896
            VKT+ETGY+QRRL+KA+ED+   YD +VRNS G V+QFLYG+DG+D   +E   L     
Sbjct: 841  VKTAETGYMQRRLMKALEDLSTHYDFSVRNSEGGVVQFLYGDDGLDPAELEGNAL----- 895

Query: 897  KKSEFDKAFRFEMDEENWNPN-YMLQEYIDDL----------------KTIKELRDVFDA 939
               E+++ FR    +    P+ Y+L   + DL                K I ++R+    
Sbjct: 896  -PVEYNRTFRHASAKTADVPSRYLLPYEVMDLVNHLLSQDRFERVCTSKYIDQVREFCYE 954

Query: 940  EVQKLEAD-RYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
            +V K  A+ R       A   D  W +  +L     +AQ+    +  R S+   +E +  
Sbjct: 955  QVAKRMAETREAYGMYPALERDGDWDVDTDLSLGADDAQRAVVENKVRVSEATILEFINL 1014

Query: 999  VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
                  R K+ PG    +V AQ                                  IGE 
Sbjct: 1015 CWDKYMRAKIEPGSAVGAVGAQS---------------------------------IGE- 1040

Query: 1059 ESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK 1118
                      PG               TQMTL TFH+AGV++ NVTLGVPR++EIIN AK
Sbjct: 1041 ----------PG---------------TQMTLKTFHFAGVASMNVTLGVPRIKEIINAAK 1075

Query: 1119 KIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEF 1178
             I TP ++  L      +++ A+ V+  +E T L  V              ++IEE    
Sbjct: 1076 VINTPIIAATLVS--EKSEQAARIVKGRIEKTYLGDV-------------ASVIEEAWSG 1120

Query: 1179 VKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKI----NQEFDDDLTCI 1234
              +Y  +  +  A +K+   +   ++ R ++   ++ +    E+I    NQ   D L   
Sbjct: 1121 TYTYIGIDIDTAAIQKLQLEVTLDDIKRAIVAMPRMKIK--EERIIVLPNQ---DRLQIY 1175

Query: 1235 FNDDNADK-LILRIRIMNDEAPKGELND--ESAEDDVFLKKIESNMLTEMALRGVNLLAV 1291
             + D  +K +   ++ +  + PK  +     ++   +  +K +  +L E    G  L  V
Sbjct: 1176 IHPDEKEKDVYYSLKQLKRQLPKVVIKGIPHASRAVISDEKGQRKLLVE----GYGLREV 1231

Query: 1292 MCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMT 1351
            M  E V    T +NH++E+ +VLGIEA R ++  E+   ++  G  ++ RH+ +L D MT
Sbjct: 1232 MTTEGVVGTHTHTNHVMEMQQVLGIEAARSSIYREIDYTMASHGMSIDPRHVMLLADVMT 1291

Query: 1352 YRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAP- 1410
            Y+G ++ ITR G+ +     +M  SFE+T D L DAA+F +SD + GV+E+I++G  A  
Sbjct: 1292 YKGEVLGITRFGVAKMKDSVLMLASFEKTTDHLFDAALFGKSDSISGVSESIIMGNPAQT 1351

Query: 1411 IGTG 1414
            +GTG
Sbjct: 1352 VGTG 1355


>gi|156370189|ref|XP_001628354.1| predicted protein [Nematostella vectensis]
 gi|156215328|gb|EDO36291.1| predicted protein [Nematostella vectensis]
          Length = 1398

 Score =  751 bits (1939), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/1468 (33%), Positives = 759/1468 (51%), Gaps = 187/1468 (12%)

Query: 14   KVRMVQFGILSPDEIRQMSVVQI----EHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
            K+  + FG+ SP++++Q S +Q      + +   R  P P G+ DP +GT  +   CETC
Sbjct: 14   KISHINFGMFSPEQMQQYSHLQCISKNLYNQDNTR-TPVPYGVLDPHMGTCSKDRMCETC 72

Query: 70   TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIR 128
               +A+C GH+G+++L  P+FH+G  ++ + I++ VC NC ++L    + K F   LK  
Sbjct: 73   GKGLADCVGHYGYIDLELPVFHVGHFRSTIIILQCVCKNCCRVLLPPAEKKQFLDTLKKP 132

Query: 129  NPKNRLKKILDACKNKTK--------CEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTI 180
            N  +  KK +     +          CE     D+ G   +  L                
Sbjct: 133  NISSLAKKGMKKKIVEKCKKISHCPYCE-----DLNGFVRKVGL---------------- 171

Query: 181  EGMKMIAE-YKAQRKKND----------------DQEQLPEPVERKQTLTAERVLGVLKR 223
              MK++ E YK  RK  D                ++E  P   + ++ L   RVL + ++
Sbjct: 172  --MKIVHEKYKTTRKIVDPIISDFQSSFDVALENNKELSPLLPKAQEVLNPLRVLDIFQQ 229

Query: 224  ISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRH 272
            I ++D  LL  +P  + P  +I++ +  PP  +RPS           DD+T +L  I+  
Sbjct: 230  IPEQDYPLLMFSPGMSHPHDLIMRRILAPPVCIRPSVISELASGSNEDDVTMKLTEIVFL 289

Query: 273  NENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAK 332
            N+ +R+    GA   +I E    LQ   A Y ++E+ G P   Q   +  +    RLK K
Sbjct: 290  NDVIRKHRSVGAKVQMIMEDWDFLQLQCALYINSEMSGIPLNMQ-PKKGTRGFVQRLKGK 348

Query: 333  EGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELV 392
            +GR RGNL GKRVDFS RTVI+PDP + IDQ+ VP  +A  LTYPE VT  N++ +K+LV
Sbjct: 349  QGRFRGNLSGKRVDFSGRTVISPDPNLRIDQVAVPIHVAKVLTYPERVTQSNLKLMKQLV 408

Query: 393  EYGPHPPPGKTGAKYII-RDDGQRLDLRYL-KKSSDHHLELGYKVERHLNDGDFVLFNRQ 450
              G    PG   A +I  R+   +  L+Y  +K     L++G  VERHL DGD VLFNRQ
Sbjct: 409  LNGADQHPG---ANFIQQRETNTKRFLKYGNRKLIAKQLKIGDTVERHLIDGDVVLFNRQ 465

Query: 451  PSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 510
            PSLHK+SIM H   + P+ TFR N  V +PYNADFDGDEMN+H+PQ+ E +AE L LM V
Sbjct: 466  PSLHKLSIMAHLATVRPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAEALTLMGV 525

Query: 511  PKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNI---LMWWED--FDGKVPQ 565
               +V+P++  P++  +QD + G   +T +D F+++     +   ++  +D   D ++P 
Sbjct: 526  KNNLVTPRNGEPLIAAIQDFITGAYLLTYKDVFLDRSHIAQLCASILAGKDTGVDIELPP 585

Query: 566  PTILKPRPLWTGKQVFNLII---PK---QINL-FRTAAWHADNDKGILTAGDTLVRIEKG 618
            P I KP  LWTGKQVF++++   PK   ++NL  R   + +  D   L   D+ V I   
Sbjct: 586  PAIHKPCRLWTGKQVFSVLLRPNPKVKVRMNLRARGKQYTSGED---LCVNDSFVVIHNS 642

Query: 619  ELLSGTLCKKTLGT-STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDT 677
            +L+ G L K  LG+ S  S+ +V+  + G   A   +     +  ++L    FSIGIGD 
Sbjct: 643  DLMCGALDKAVLGSGSKNSVFYVLLRDFGQQVAADAMWRVARICPFFLSNRGFSIGIGDV 702

Query: 678  IADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEA 737
                  ++   D +S   +  ++ I + ++  L+ +PG +  ++ E  + + L+  RD A
Sbjct: 703  TPGHGLLQAKEDLLSTGYSKCEDYINEFREGKLQTQPGCSAEDTLEAVILKELSVIRDHA 762

Query: 738  GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTK 797
            G +  + L +SN    M   GSKGSFINISQM ACVGQQ + GKRIP GF DR+LPHF +
Sbjct: 763  GKACLRELHKSNTPLTMAVCGSKGSFINISQMIACVGQQAISGKRIPDGFEDRSLPHFKR 822

Query: 798  DDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIM 857
                P ++GFV+NS+  GLTP EFFFHAMGGREGL+DTAVKT+ETGY+QRRLVK++ED+ 
Sbjct: 823  HSKLPAAKGFVKNSFFSGLTPTEFFFHAMGGREGLVDTAVKTAETGYMQRRLVKSLEDLS 882

Query: 858  VKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPN 917
             +YD TVR S GD++QF YG DG+D   +E       K K  +F + F       +   N
Sbjct: 883  TQYDITVRTSTGDIVQFRYGGDGLDPTDMEG------KDKPLDFSRVF------SHIQCN 930

Query: 918  YMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQ 977
            ++++E                   + L + R   A EIA     S    +          
Sbjct: 931  HVMREE------------------RPLTSSR---AREIAKGIIESSEFEM--------CS 961

Query: 978  KTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFAS 1037
            K FK +    SD     + + ++K+  +  VVP                      S  ++
Sbjct: 962  KDFKTE---TSDFVE-NLAKKIEKIHAQYGVVP---------------------HSITSN 996

Query: 1038 KRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 1097
            K V   +R T    +  +     ++L++ + PG  +G + AQSIGEP TQMTL TFH+AG
Sbjct: 997  KIVDYVNRCTETQLKLFLSMCREKYLRARMEPGSAVGAICAQSIGEPGTQMTLKTFHFAG 1056

Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE 1157
            V++ N+TLGVPR++EIIN ++KI TP +S  L+   +  +E A+ V+  +E T L  VTE
Sbjct: 1057 VASMNITLGVPRIKEIINASRKISTPIISAQLQD--DRDQELARAVKGRIERTLLGEVTE 1114

Query: 1158 ATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMA 1217
              E  + PD    +I+ D E ++      D D     I     ++ LN+  +     ++ 
Sbjct: 1115 YIEEVFLPDNCYLLIKLDTERIRLLKLEVDADTIQAAICSS-RKLRLNQSQVRVHSSAVI 1173

Query: 1218 AV---------AEKINQEFDDDL--TCIFNDDNADKLILRIRIMNDEAPKGELNDESAED 1266
             V            + Q+   DL    I    N  + I+ I   ++E  +G       E+
Sbjct: 1174 CVYPTESAKSSLHYVMQQLRSDLPGVLIKGYKNVTRAIIHI---DEEQSRG------GEE 1224

Query: 1267 DVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDE 1326
                         ++ + G +L AV+    V    TTSN+ IE+  VLGIEA R+ +++E
Sbjct: 1225 HY-----------KLLVEGDDLQAVISTMGVKGNGTTSNNTIEVERVLGIEAARQTIMNE 1273

Query: 1327 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1386
            +   +   G  ++ RH+ +L + M ++G ++ ITRHG+ +     +M  SFE T D L +
Sbjct: 1274 IIYTMKNHGMSIDVRHVMLLAELMAFKGEILGITRHGLAKMKESVLMLASFERTADHLFE 1333

Query: 1387 AAVFAESDYLRGVTENIMLGQLAPIGTG 1414
            AA+    D + GV+E I++G    IGTG
Sbjct: 1334 AALHGRKDPIDGVSECIIMGMPMNIGTG 1361


>gi|119191177|ref|XP_001246195.1| hypothetical protein CIMG_05636 [Coccidioides immitis RS]
          Length = 1430

 Score =  751 bits (1938), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/1436 (34%), Positives = 756/1436 (52%), Gaps = 125/1436 (8%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGET----TERGKPKPGGLSDPRLGTIDRKMKCETCT 70
            ++ ++FG+L+  +I   ++V++   +      +R   + G L D R+G   +   CETC 
Sbjct: 24   IKEIKFGVLASQDIVSQALVEVSDRKLFDLDNDRAVARHGPL-DGRMGISSKSGTCETCG 82

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIRN 129
              + EC GHFGH+ L  P FH+G+ K V+ I++ +C +CS+IL  E++ + F + ++ + 
Sbjct: 83   GALQECNGHFGHVRLVLPAFHVGYFKRVIGILQEICKDCSRILLPENERRIFLKEMRRQG 142

Query: 130  PKN--RL---KKILDACKNKTKCEGGDEID-VPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
              N  R+   K+I D C+    C     ++ V  + G   LK       A     + + +
Sbjct: 143  IDNLRRMQINKRINDRCRKTRTCYVCHAVNGVVKKAGTSALKITHDKFRAFNASTSAKKV 202

Query: 184  ----KMIAE--YKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPK 237
                K++ +  ++  ++ N D E+  + V+    L   RVL + +RISDEDC+LLGLNP+
Sbjct: 203  PPPSKLVFDRSFEEAKRSNTDIEKHFKKVQ--DDLNPLRVLKLFRRISDEDCELLGLNPE 260

Query: 238  YARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
              RP+  + Q +P PP  +RPS         DDLT +L  I++ N NL+     GAP   
Sbjct: 261  EVRPEMFLWQYIPAPPVSIRPSVGQEGASTEDDLTAKLGDIVQSNINLKNAINKGAPVQT 320

Query: 289  ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
            I E    +Q  IA Y ++++PG  +A    G+PI+ IC RLK K+GR RGNL GKRVDFS
Sbjct: 321  IIECWDYMQLQIAVYINSDVPGLQKAD--FGKPIRGICQRLKGKQGRFRGNLSGKRVDFS 378

Query: 349  ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
             RTVI+PDP + ID++ VP  +A+N+TYPE VT YN E+L+E V  G    PG   A Y+
Sbjct: 379  GRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPG---ANYL 435

Query: 409  -IRDDGQRLDLRY--LKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
              R    ++ L+Y  L   +D  LE G  VERHL DGD VLFNRQPSLHK+SI+ H +K+
Sbjct: 436  SKRGTTFKVFLKYGNLNLMADQ-LEEGDVVERHLEDGDIVLFNRQPSLHKLSILSHFVKV 494

Query: 466  MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
             P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE +ELM V   + +P++  P++ 
Sbjct: 495  RPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKNNLATPKNGEPIIA 554

Query: 526  IVQDTLLGCRKITKRDTFIEKDVFMN----ILMWWEDFDGKVPQPTILKPRPLWTGKQVF 581
             +QD +     ++ +D F ++  F      +L     FD  +P P +LKP+ LWTGKQVF
Sbjct: 555  AIQDFITAAYLLSSKDNFYDRGSFTQTCGYMLQPGTKFD--LPPPAVLKPQMLWTGKQVF 612

Query: 582  NLII------PKQINLFRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGTLCKKTLGT 632
            N+++      P  +NL   A       KG    L   D  + I   E++ G + K T+G+
Sbjct: 613  NVLMRPSKESPVLVNL-DAACREFRAPKGTPRDLDPNDGWLCIRNSEIMCGVMDKSTIGS 671

Query: 633  ST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTI 691
                S+ +V+  + GP  A + +     L   W     FSIGI D       ++     +
Sbjct: 672  GKKDSVFYVMLRDFGPQVAAEAMNRLSRLSARWFTNIGFSIGITDVYPGDSLLQAKKQLV 731

Query: 692  SKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNL 751
             +A      LI+  +   LE  PG    ++ E++++ +L+  R +AG      LS+ N+ 
Sbjct: 732  EEAYAQCDALIQLFKAGKLEKAPGGDEQQNMESQISGILSKVRQQAGEQCIAELSKWNSP 791

Query: 752  KAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENS 811
              M T+GSKGS IN++QM A VGQQ + G+R+  GF DRTLPHF K    P ++GFV NS
Sbjct: 792  LIMATSGSKGSTINVAQMIALVGQQIIAGQRVQDGFQDRTLPHFPKYARQPPAKGFVRNS 851

Query: 812  YLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 871
            +  GL P EFFFHA+ GREGLIDTAVKT+ETGY+ RRL+K++ED+  +YD TVRNS  ++
Sbjct: 852  FFSGLIPSEFFFHAISGREGLIDTAVKTAETGYMSRRLMKSLEDLSSRYDDTVRNSSSNI 911

Query: 872  IQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF-RFEMDEENWNPNYMLQEYIDDLKTI 930
            +QF YG+D +D V +E       K K   FD+ F   E    +     +L   + DL   
Sbjct: 912  VQFQYGDDKLDPVDMEG------KAKPVHFDRTFTHAETTTYSKEDRGLLPSEVIDL--- 962

Query: 931  KELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDM 990
               R +   E  KL  DR+ L       G+S          L +  +    +D    +  
Sbjct: 963  --CRQMLAPERAKL--DRFDLL------GNS----------LEYTDRSDHGIDQLESNRD 1002

Query: 991  HPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREA 1050
                + + +    +RL  V G +  ++E Q        + L  T          +L+ + 
Sbjct: 1003 FLQSIEDYIQAKADRLHSVTGTEADTLEGQ--------MALSHTV---------KLSAKT 1045

Query: 1051 FEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRL 1110
                I    +++ ++ V PG  +G V AQSIGEP TQMTL TFH+AGV+  ++T GVPR+
Sbjct: 1046 LTTFITSCLTKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVAGMSITQGVPRI 1105

Query: 1111 REIINVAKKIKTPSLSVFLKPGVNSTKERAKN-VQCALEYTTLRSVTEATEVWYDPDPMG 1169
            +EIIN +K+I TP ++  L   VN    RA   V+  +E T ++ +    E  +      
Sbjct: 1106 KEIINASKEISTPIITCEL---VNKEDVRAAQIVKGRVEKTFIKDIIYYIEEAWTSSVAY 1162

Query: 1170 TIIEEDVEFVKSY-YEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFD 1228
              I+ D   +++   E+   DI        L  I+ ++    D  L   +    I+  F 
Sbjct: 1163 INIKIDFSTIQALQLELTLRDI--------LNAIKKHKRFRSD-DLKFRSFGSHIHI-FV 1212

Query: 1229 DDLTCIFNDDNADKLI------LRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMA 1282
            D  T   +   A++        +R++ +    P  ++          ++  E+N    + 
Sbjct: 1213 DQATTKTSLTKAEQAATGSDPYIRLKHLKRLLPTIQVLGHPQCSRAIIRTDETNTTNTLL 1272

Query: 1283 LRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRH 1342
            + G  L A M  + +   RT +N+++E  +VLGIEA R  ++DE+  V+   G  ++ RH
Sbjct: 1273 VEGYGLRACMTTDGIFGTRTRTNNIMETKDVLGIEAARTTIVDEISDVMKDMG--IDPRH 1330

Query: 1343 LAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRG 1398
            + +L D MTY+G ++ ITR G+ +     +   SFE+T D L DA     +D + G
Sbjct: 1331 MQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGAGRTDLVEG 1386


>gi|212538083|ref|XP_002149197.1| DNA-directed RNA polymerase III largest subunit, putative
            [Talaromyces marneffei ATCC 18224]
 gi|210068939|gb|EEA23030.1| DNA-directed RNA polymerase III largest subunit, putative
            [Talaromyces marneffei ATCC 18224]
          Length = 1439

 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/1466 (33%), Positives = 774/1466 (52%), Gaps = 152/1466 (10%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGE--TTERGKP-KPGGLSDPRLGTIDRKMKCETCTA 71
            ++ ++FG LS +++   +VV+I        ER +  +  G  D RLG   +   C TC  
Sbjct: 22   IKELKFGALSDNDVISQAVVEISDRRFYDLERDRVVQENGPLDRRLGISGKMETCLTCGL 81

Query: 72   NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALKIRNP 130
               +C GHFGH++L  P FHIG+ K V+ I++ +C  CS IL  E + + F +  ++R P
Sbjct: 82   GHKDCNGHFGHVKLVLPAFHIGYFKRVIGILQVICKECSTILLPEAERRAFLK--EMRRP 139

Query: 131  K----NRL---KKILDACKNKTKC-EGGDEIDVPGQDGEEPLKK--------NKGGCGAQ 174
            +     RL   K++++ CK    C   G    V  + G   LK         N+     +
Sbjct: 140  RLDNLRRLQIAKRVVERCKKTRDCPRCGAVNGVVKKAGTAALKIVHEKFRHFNQSTSAKK 199

Query: 175  QPKLT-IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLG 233
             P ++ I     +AE +A    N D ++  +  +    L A RV+ + K+I++ DC+LLG
Sbjct: 200  VPPISKIVFDNSLAEARAS---NPDVDRFYKKAQ--DDLHALRVMNLFKKITNADCELLG 254

Query: 234  LNPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGA 284
            L+P   RP+  + Q +P PP  +RPS         DDLT +L  I++ N  LR   R GA
Sbjct: 255  LDPTEVRPETFLWQYIPAPPNCIRPSVSQDGASNEDDLTAKLGDIVQSNITLRNNLRKGA 314

Query: 285  PAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKR 344
            P   + E    +   IA Y + ++PG       +G+P +S+ SRLK K+GR RGNL GKR
Sbjct: 315  PVPTLMECWDYMTLQIAIYINGDVPG---LKGEAGKPTRSLVSRLKGKQGRFRGNLSGKR 371

Query: 345  VDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTG 404
            VDFS RTVI+PDP + ID++ VP  +A N+TYPE VT YN+E L++LV  G +  PG   
Sbjct: 372  VDFSGRTVISPDPNLRIDEVAVPELVAKNMTYPEIVTRYNLEYLQKLVRNGINKWPG--A 429

Query: 405  AKYIIRDDGQRLDLRYLKKSSD---HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
             K I +D G  + L++  KS D     L++G  VERHL DGD  L+NRQPSLHK+SI+ H
Sbjct: 430  KKVIKKDSGLTISLKHSAKSLDTISKQLQIGDLVERHLVDGDIALYNRQPSLHKLSILSH 489

Query: 462  RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNR 521
             +K+ PY TFR+N  V +PYNADFDGDEMN+H+PQ+ E R+E +ELM V   +V+P++  
Sbjct: 490  FVKVRPYRTFRMNECVCNPYNADFDGDEMNLHIPQTEEARSEAMELMGVKNNLVTPKNGE 549

Query: 522  PVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWW----EDFDGKVPQPTILKPRPLWTG 577
            P++G +QD +     ++ +D F ++  F  I ++       FD  +P P ILKP+ +WTG
Sbjct: 550  PIIGAIQDFISAAYVLSSKDNFFDRRSFTQICLYMLGPETRFD--LPPPAILKPQMMWTG 607

Query: 578  KQVFNLII------PKQINL---FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKK 628
            KQVFN+++      P ++N+    R      D     L   D  + I   E++ G + K 
Sbjct: 608  KQVFNILMRPNKDDPVKVNIDAACREFKAPKDGQPKDLDPNDGWLVIRNSEIMCGVMDKS 667

Query: 629  TLGTST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETI 687
            T+G+    ++ +++  + GP AA + +     L   W     FSIGI D     + ++T 
Sbjct: 668  TIGSGKKDNVFYIMLRDFGPPAAAEGMNRLSKLCARWFTNVGFSIGITDVYPSERLVQTK 727

Query: 688  NDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSE 747
            N+ + +A      +I Q +   LE  PG   +++ E++V+ +L+  R +AG    K LS+
Sbjct: 728  NELVERAYAACDEVIAQYKAGKLEKLPGCDELQTMESQVSGILSKVRQQAGEECIKQLSK 787

Query: 748  SNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGF 807
             N    M T+GSKGS IN+SQM A VGQQ +  +R+  GF DRTLPHF K+   P S+GF
Sbjct: 788  YNAPLIMATSGSKGSSINVSQMVAVVGQQIISSERVQDGFQDRTLPHFPKNARHPPSKGF 847

Query: 808  VENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNS 867
            V NS+   L+P EFFFHAM GREGLIDTAVKT+ETGY+ RRL+K++ED+  KYDGT+R S
Sbjct: 848  VRNSFFSSLSPTEFFFHAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSAKYDGTIRTS 907

Query: 868  LGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDL 927
               ++QF YG D +D V +E       K K   FD+ +   M   + N    LQ    ++
Sbjct: 908  SASIVQFSYGGDDLDPVDMEG------KAKPVHFDRTYNHAMAVTHNNNERGLQP--SEI 959

Query: 928  KTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP 987
            + I E       E+   E  RY                   +++ ++     +K D    
Sbjct: 960  RAITE-------ELLSEERKRY-------------------VRKGLFGEDLPYKDDSDYG 993

Query: 988  SDMHPMEVVEA-VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEH-- 1044
            +D   +E   A +D +QE ++    +  +++E   ++ L        +    R+  +H  
Sbjct: 994  TDQ--LESARAFLDSIQEHIE----KKAVAMEKAMDSAL--------SDQEARMALDHVG 1039

Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
            +L+  +  + I     ++ ++ + PG  +G V AQSIGEP TQMTL TFH+AGV    +T
Sbjct: 1040 KLSEGSLRYFIKSCLFKYEKAKIEPGHAVGAVGAQSIGEPGTQMTLKTFHFAGVGNLALT 1099

Query: 1105 LGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE-ATEVWY 1163
             GVPR++EIIN +K+I TP ++  L   +      A+  +  +E T LR +     E W 
Sbjct: 1100 QGVPRIKEIINASKEISTPVITCHL--AIPHELHAARIAKGRIEKTFLRDIIHYIRESWT 1157

Query: 1164 DPDPMGTI-----IEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNR---EMMVDKKLS 1215
            D +   T+       E+++   S  ++ D   +  +     L +++ R   ++ VD   S
Sbjct: 1158 DKEGYITVKLNWDTIENLQLELSLRQIKDAITSHRRFKGSDLTVDVLRSHIKIRVDMDPS 1217

Query: 1216 MAAVAEKINQEFDDDLTCIFND-----DNADKLILRIRIMND-EAPKGELNDESAEDDVF 1269
              A   K       D+     D      +  +++  I+++   +A +  ++ E       
Sbjct: 1218 SKAGLSKT------DIAATSADPYLRLKHLKRMLPDIQVLGHPQARRAIIHSERG----- 1266

Query: 1270 LKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL-R 1328
                    L ++ + G  L A M  + V+  RT +N+++E+  VLGIEA R  +++E+  
Sbjct: 1267 --------LNKLLVEGYGLRACMNTDGVEGVRTKTNNVMEMRAVLGIEAARETIINEMGE 1318

Query: 1329 VVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAA 1388
            V+   D   ++ RH+ +L D MT  G ++ ITR G+ +     +   SFE+T D L DA 
Sbjct: 1319 VMKDMD---IDPRHMHLLADIMTTNGEVLGITRFGMAKMRDSVLQLASFEKTADHLFDAG 1375

Query: 1389 VFAESDYLRGVTENIMLGQLAPIGTG 1414
                +D + GV+E I++G+   +GTG
Sbjct: 1376 GTGRTDRVEGVSECIIMGKTVSLGTG 1401


>gi|194245532|gb|ACF35375.1| RNA polymerase II large subunit [Chauliognathus opacus]
          Length = 629

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/630 (57%), Positives = 468/630 (74%), Gaps = 5/630 (0%)

Query: 461  HRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
            HR+K++P+STFR+NLS TSPYNADFDGDEMN+HVPQS ETRAEV  L + P+ I++PQ+N
Sbjct: 1    HRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENLHITPRQIITPQAN 60

Query: 521  RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQV 580
            +PVMGIVQDTL   RK+TKRD FI+K+  MN+LM+   +DGK+P+P ILKP+PLWTGKQ+
Sbjct: 61   KPVMGIVQDTLTAVRKMTKRDVFIDKEQMMNLLMFLPIWDGKMPRPAILKPKPLWTGKQL 120

Query: 581  FNLIIPKQINLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGS 636
            F+LIIP  +N+ RT + H D  D G    ++ GDT V +E GEL+ G LCKKTLGTS GS
Sbjct: 121  FSLIIPGNVNMIRTHSTHPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGS 180

Query: 637  LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
            L+H+   E+G +   +F G+ Q ++N WLL    SIGIGDTIAD +T   I   I KAK 
Sbjct: 181  LLHICMLELGHEVCGRFYGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIKKAKE 240

Query: 697  NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
            +V  +I++A +  LEP PG T+ ++FEN+VN++LN ARD+ G SA+KSL+E NNLKAMV 
Sbjct: 241  DVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVV 300

Query: 757  AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
            AGSKGS INISQ+ ACVGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GL
Sbjct: 301  AGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 360

Query: 817  TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
            TP EF+FHAMGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ  Y
Sbjct: 361  TPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRY 420

Query: 877  GEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDV 936
            GEDG+    +E QTL ++K+    F++ FRF+   E +      ++    L    E+   
Sbjct: 421  GEDGLCGEMVEFQTLPTVKLSNKAFERKFRFDPSNERYLRRIFNEDVSRQLMGSGEVISE 480

Query: 937  FDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVV 996
             + E ++L+ DR  L  +I  SG+S   LP NL+R+IWN QK F ++ R P+D+ P+ V+
Sbjct: 481  LEREWEQLQKDREAL-RQIFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPLRVI 539

Query: 997  EAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIG 1056
            + V +L ++  +V G+D LS +A +NATL F  L+RST  +K V +E RL+ EAFEW+IG
Sbjct: 540  QGVRELLKKCIIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIG 599

Query: 1057 EIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1086
            EIE+RF Q+   PGEM+G +AAQS+GEPAT
Sbjct: 600  EIETRFQQAQANPGEMVGALAAQSLGEPAT 629


>gi|302500232|ref|XP_003012110.1| hypothetical protein ARB_01618 [Arthroderma benhamiae CBS 112371]
 gi|291175666|gb|EFE31470.1| hypothetical protein ARB_01618 [Arthroderma benhamiae CBS 112371]
          Length = 1444

 Score =  749 bits (1934), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/1487 (34%), Positives = 770/1487 (51%), Gaps = 169/1487 (11%)

Query: 15   VRMVQFGILSPDEIRQMSVVQIEHGETTE----RGKPKPGGLSDPRLGTIDRKMKCETCT 70
            ++ + FG+LS  +I   + V+I   +  +    R   + G + DPRLG  ++   CETC 
Sbjct: 24   IKEINFGVLSNQDIISQAHVEISDRKLFDLDNNRAVARNGPM-DPRLGISNKSDTCETCG 82

Query: 71   ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP 130
             ++ EC GHFG++ L  P FH+G+ K  + I++ +C +CSKIL  ED+ +     ++R P
Sbjct: 83   GDLQECNGHFGYVRLVLPAFHVGYFKRTIEILQDICKDCSKILLPEDERR-SYLKELRRP 141

Query: 131  K----NRL---KKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
                  R+   K+I   C+    C   + I+   +      K + G       K      
Sbjct: 142  GLDNLRRMQINKRINVRCRKTPVCYYCNAINGTVK------KASTGALKIVHDKFRAFNA 195

Query: 184  KMIAE-------------YKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQ 230
             + A+             ++  +K N D E+    V     L   RVL + +RIS+EDC+
Sbjct: 196  SLSAKKIPPPSKLAFDRSFEEAKKSNPDIEKHYRRVF--DDLNPLRVLKLFRRISNEDCE 253

Query: 231  LLGLNPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQER 281
            LL LN   ARP++ + Q +P PP P+RPS         DDLT +L  I++ N NL+    
Sbjct: 254  LLSLNVDGARPEYFLWQFIPAPPVPIRPSVGQEGASTEDDLTAKLGDIVQSNLNLKMALD 313

Query: 282  NGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLM 341
             GAP   I E    +Q  IA Y ++++PG       S + I+ +C RLK K+GR RGNL 
Sbjct: 314  KGAPVQTIIECWDYMQLQIAVYINSDIPGLQNTD--SKKTIRGLCQRLKGKQGRFRGNLS 371

Query: 342  GKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPG 401
            GKRVDFS RTVI+PDP + ID++ VP  +A+N+TYPE VT YN E+L++ +  G    PG
Sbjct: 372  GKRVDFSGRTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPG 431

Query: 402  KTGAKYIIRDDGQ-RLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM 459
               A Y+I++    RL L+Y   +   + L  G  VERHL DGD VLFNRQPSLHK+SI+
Sbjct: 432  ---ANYLIKEGNSFRLFLKYGNLNMIANQLREGDIVERHLEDGDIVLFNRQPSLHKLSIL 488

Query: 460  GHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQS 519
             H +K+ P+ TFRLN  V +PYNADFDGDEMN+HVPQ+ E RAE +ELM V   + +P++
Sbjct: 489  SHFVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEARAEAMELMGVKSNLATPKN 548

Query: 520  NRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK--VPQPTILKPRPLWTG 577
              P++  +QD +     ++ +D F ++  F  I +   D   +  +P P  +KP+ LWTG
Sbjct: 549  GEPIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLSMLDSSTRFELPPPATIKPQMLWTG 608

Query: 578  KQVFNLII------PKQINLFRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGTLCKK 628
            KQVF++++      P ++NL   A       KG    L   D  + I   E+L G   K 
Sbjct: 609  KQVFSVLMRPNKDCPVKVNL-DAACRQLKLVKGQPRDLCENDGWLCIRNSEMLCGVADKS 667

Query: 629  TLGTST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETI 687
            T+G     ++  VI  + G  AA + +     L   WL    FSIGI D       ++  
Sbjct: 668  TIGAGKKDNIFFVIQRDFGYAAAAEAMNRLSKLSARWLTNKGFSIGITDVYPGESLVKLK 727

Query: 688  NDTISKAKNNVKNLIKQAQDKSLEPEPGRT-MMESFENKVNQVLNTARDEAGSSAQKSLS 746
            +  I+ A     +LI  A  +  +P+ G++   ++ EN++  +LN  R +AG      LS
Sbjct: 728  DTLINTAFQQCDDLITAASKE--KPQMGKSDSRQTAENEITGILNKVRQQAGEYCISELS 785

Query: 747  ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRG 806
            + N    M T GSKGS IN+SQM A VGQQ++E  R+  GF DRTLPHF +      ++G
Sbjct: 786  KHNAPLIMATCGSKGSNINVSQMVAVVGQQSIENARVSKGFQDRTLPHFARHSQHALAKG 845

Query: 807  FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRN 866
            FV NS+  GLTP EF FHAM GREGLIDTAVKT+ETGY+ RRL+K++ED+  +YD TVR+
Sbjct: 846  FVRNSFFSGLTPTEFLFHAMSGREGLIDTAVKTAETGYMSRRLMKSLEDLSTRYDNTVRD 905

Query: 867  SLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAF------RFEMDEENWNPNYML 920
            S   +IQF YG+D +D V +E+        K   FD+ F       ++ DE+  + + +L
Sbjct: 906  SSSFIIQFQYGDDQLDPVNMEASA------KPVHFDRTFTHAESTTYDKDEKGLSADEIL 959

Query: 921  QEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTF 980
                          ++   E +KL   RY L       G++          L + A+  F
Sbjct: 960  A----------LCEELIAPERKKLV--RYDLL------GNT----------LSYKAENDF 991

Query: 981  KVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRV 1040
              D    +      + E V     +L+      P   E  K    F +    ++  S R 
Sbjct: 992  ATDQWESNRDFLSSIEEYVAAKAAQLR------PSDNEEGKEQMAFTH----TSKISART 1041

Query: 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
            LK       AF   I     +++++ V PG  IG + AQSIGEP TQMTL TFH+AGV+ 
Sbjct: 1042 LK-------AF---ITSCLDKYMRAHVEPGHSIGAIGAQSIGEPGTQMTLKTFHFAGVAG 1091

Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCALEYTTLRSVTEAT 1159
             ++T GVPR++EIIN +K+I TP ++  L   VN T  R A+ V+  +E   L+ +    
Sbjct: 1092 MSITQGVPRIKEIINASKEISTPIITCEL---VNKTDMRIAEIVKGRVEKLFLKDI---- 1144

Query: 1160 EVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAV 1219
             V+Y        IEE+     S+  +    +    I    L + L + ++  KK      
Sbjct: 1145 -VYY--------IEENRSQTSSFINIK---VDFSTIKKLQLELTLRQILLAIKKHKAFKA 1192

Query: 1220 AEKINQEFDDDLTCIFNDDNADKL--------------ILRIRIMNDEAPKGELN---DE 1262
            A+   + F+  +  I+ D+ A                  +RI  +    P  ++    D 
Sbjct: 1193 ADLTFRSFNSHIH-IYVDEGASMAGVSVSEQKITGSDPYIRINYLRRILPNIQVFGYPDC 1251

Query: 1263 SAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRA 1322
            +       +K+ +N+L    + G  L A M  + ++  RT +NH++E+ +VLGIEA R  
Sbjct: 1252 TRAVIRVGEKVATNILL---VEGYGLRACMTTDGIEGHRTRTNHVMEMRDVLGIEAARTT 1308

Query: 1323 LLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVD 1382
            ++DE+  V+S  G  ++ RH+ +L D MTY+G ++ ITR G+ +     +   SFE+T D
Sbjct: 1309 IIDEISSVMS--GMAIDPRHMQLLADVMTYKGEVLGITRFGLAKIRDSVLQLASFEKTAD 1366

Query: 1383 ILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAI 1429
             L DA      D ++GV+E I++G+   +GTG   +  + ++L + +
Sbjct: 1367 HLFDAGGAGRRDTVQGVSECIIMGKTISLGTGSMEVVRDLKLLDSHV 1413


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.314    0.131    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,253,428,323
Number of Sequences: 23463169
Number of extensions: 1549808413
Number of successful extensions: 13326389
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 30300
Number of HSP's successfully gapped in prelim test: 105194
Number of HSP's that attempted gapping in prelim test: 8019034
Number of HSP's gapped (non-prelim): 1668719
length of query: 1815
length of database: 8,064,228,071
effective HSP length: 157
effective length of query: 1658
effective length of database: 8,675,477,834
effective search space: 14383942248772
effective search space used: 14383942248772
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 85 (37.4 bits)