BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000235
(1815 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium
discoideum GN=polr2a PE=2 SV=2
Length = 1727
Score = 1910 bits (4947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 951/1567 (60%), Positives = 1163/1567 (74%), Gaps = 96/1567 (6%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
M FP S AE+ KV+ VQFGILSPDEIR MSV ++EH ET E GKPK GGL DP +GTI
Sbjct: 1 MAAFFPPSSAELRKVKRVQFGILSPDEIRNMSVARVEHPETYENGKPKAGGLLDPAMGTI 60
Query: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
D+ +C+TC+ MAECPGHFGH+ELAKP+FHIGF+ TVL I+R VC++CSK+L D ++H
Sbjct: 61 DKTQRCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHS 120
Query: 121 FKQALKIRNPKNRLKKILDACKNKTKCEGG----DEIDVPGQDGEEPLKKNKGGCGAQQP 176
F+QALKIRN K+RL ++D CKNK C G +E D+ D E GGCG P
Sbjct: 121 FRQALKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVKHGGCGNVLP 180
Query: 177 KLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
K+T E +K+I E+K + E +E+K L+AERVL +LKRI DED + +G+NP
Sbjct: 181 KITKEDLKIIVEFK---------DVTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINP 231
Query: 237 KYARPDWMILQVLP----------IPPPPVRPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
+AR DWMI VLP + R DDLTH+LA I++ N L+RQE+NGAPA
Sbjct: 232 DWARADWMIATVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPA 291
Query: 287 HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
HII+E Q LQFH+ATY DNE+PG P+A QRSGRP+KSI RLK KEGRIRGNLMGKRVD
Sbjct: 292 HIIAEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVD 351
Query: 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
FSARTVIT DP ++IDQ+GVP SIALNLTYPETVTP+NI++++EL+ GP PG AK
Sbjct: 352 FSARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPG---AK 408
Query: 407 YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
YIIR+DG R DLR++KK SD HLE GYKVERH+NDGD V+FNRQPSLHKMS+MGHRIK+M
Sbjct: 409 YIIREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVM 468
Query: 467 PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
PYSTFRLNLSVTSPYNADFDGDEMN+HVPQ+ ETRAEV+E+MMVP+ IVSPQSNRPVMGI
Sbjct: 469 PYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGI 528
Query: 527 VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP 586
VQDTLLG R TKRD F+EKD+ MNILMW +DGKVP P ILKP+ LWTGKQ+F+LIIP
Sbjct: 529 VQDTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIP 588
Query: 587 KQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
INL R + H D + +AGDT V IE+GELL+G LCK++LG + GS+IHV+ E G
Sbjct: 589 -DINLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHG 647
Query: 647 PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
D R F+ TQ +VN+WL+ F++GIGDTIAD+ TM + TIS AKN VK LI +AQ
Sbjct: 648 HDTCRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQ 707
Query: 707 DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINI 766
+K E +PG++++E+FE KVNQVLN ARD AGSSAQ SLSE NNLKAMVTAGSKGSFINI
Sbjct: 708 NKQFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINI 767
Query: 767 SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
SQM ACVGQQNVEGKRIPFGF RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM
Sbjct: 768 SQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 827
Query: 827 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWI 886
GGREGLIDTAVKTSETGYIQRRLVKAMED+ +KYD TVRNSLGDVIQF YGEDG+D ++
Sbjct: 828 GGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFV 887
Query: 887 ESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
E+Q++DSL+ +E ++ +R ++D+ ++ +M I+ ++ RD + E +++++
Sbjct: 888 ENQSIDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRNDSLTRDTLEKEFERIKS 947
Query: 947 DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
DR L EI SG+++WPLPVNL+RLI NAQK F +D RR SD++P VV ++KL RL
Sbjct: 948 DRSLLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARL 1007
Query: 1007 KVVPGEDPLS---------VEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGE 1057
K++ D E NAT+ F+IL+RSTFASKRVL E RLT +AF WV GE
Sbjct: 1008 KIIATADTTEDDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGE 1067
Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
IES+FLQ+L PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN+A
Sbjct: 1068 IESKFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIA 1127
Query: 1118 KKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVE 1177
K++KTPSL+++LKP + +RAK V+ LEYTTL +VT ATE++YDPDP TII ED E
Sbjct: 1128 KQVKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAE 1187
Query: 1178 FVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFND 1237
FV SY+E+PDE+I +SPWLLRIEL+R M+ DKKL+MA + + + ++F L CIF+D
Sbjct: 1188 FVNSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSD 1247
Query: 1238 DNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------- 1284
DNA+KLILRIR++ + KG ND +DD FL++IESNML+EM LR
Sbjct: 1248 DNAEKLILRIRMVESQETKGTDND---DDDQFLRRIESNMLSEMVLRGIKGIKKVFMRTD 1304
Query: 1285 -----------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRR 1321
GV+LL VM H DVD RTTSN ++EII+VLGIEAVR
Sbjct: 1305 DKIPKVTENGGFGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRN 1364
Query: 1322 ALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETV 1381
ALL ELR VISFDGSYVNYRHLAIL D MTYRGHLMAITRHGINR +TGP+MRCSFEETV
Sbjct: 1365 ALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETV 1424
Query: 1382 DILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLP-----SY 1436
+IL+DAA+F+E+D ++GVTENI+LGQL P+GTG ++LN +M+KNA + LP SY
Sbjct: 1425 EILMDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNVSY 1484
Query: 1437 MEGLEFGMTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTS 1494
+ TP+ S G TP+H+ +P F+ R FSP S +
Sbjct: 1485 PD-TPGSQTPSYSYGDGSTTPFHNPYDAPLSPFNETFR------GDFSP-------SAMN 1530
Query: 1495 SPGYSPS 1501
SPGY+ +
Sbjct: 1531 SPGYNAN 1537
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila
melanogaster GN=RpII215 PE=3 SV=4
Length = 1887
Score = 1892 bits (4900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1037/1924 (53%), Positives = 1332/1924 (69%), Gaps = 195/1924 (10%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMK 65
S A + +V+ VQFGILSPDEIR+MSV + ++ ET E G+PK GGL DPR G IDR +
Sbjct: 7 SKAPLRQVKRVQFGILSPDEIRRMSVTEGGVQFAETMEGGRPKLGGLMDPRQGVIDRTSR 66
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ-A 124
C+TC NM ECPGHFGH++LAKP+FHIGF+ + I+R VCF CSK+L + K K+
Sbjct: 67 CQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFYCSKMLVSPHNPKIKEIV 126
Query: 125 LKIR-NPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE-EPLKK-NKGGCGAQQPKLTIE 181
+K R P+ RL + D CK KT CEGG+++D+ ++ + +P KK GGCG QP +
Sbjct: 127 MKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKENQQPDPNKKPGHGGCGHYQPSIRRT 186
Query: 182 GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
G+ + AE+K Q N+D + E+K ++AERV +LK I+DE+C +LG++PKYARP
Sbjct: 187 GLDLTAEWKHQ---NEDSQ------EKKIVVSAERVWEILKHITDEECFILGMDPKYARP 237
Query: 242 DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
DWMI+ VLP+PP VRP+ DDLTH+L+ II+ N LR+ E +GA AH+I E
Sbjct: 238 DWMIVTVLPVPPLAVRPAVVMFGAAKNQDDLTHKLSDIIKANNELRKNEASGAAAHVIQE 297
Query: 292 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
++LQFH+AT DN++PG PRA Q+SG+P+K+I +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 298 NIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSART 357
Query: 352 VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
VITPDP + IDQ+GVP SIA NLT+PE VTP+NI+R++ELV G PG AKYI+RD
Sbjct: 358 VITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG---AKYIVRD 414
Query: 412 DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
+G+R+DLR+ KSSD HL+ GYKVERHL D D V+FNRQP+LHKMS+MGHR+K++P+STF
Sbjct: 415 NGERIDLRFHPKSSDLHLQCGYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVLPWSTF 474
Query: 472 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
R+NLS TSPYNADFDGDEMN+HVPQS ETRAEV + + P+ I++PQ+N+PVMGIVQDTL
Sbjct: 475 RMNLSCTSPYNADFDGDEMNLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTL 534
Query: 532 LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
RK+TKRD FI ++ MN+LM+ +D K+PQP ILKPRPLWTGKQ+F+LIIP +N+
Sbjct: 535 TAVRKMTKRDVFITREQVMNLLMFLPTWDAKMPQPCILKPRPLWTGKQIFSLIIPGNVNM 594
Query: 592 FRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
RT + H D D+G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G
Sbjct: 595 IRTHSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSAGSLLHICFLELGH 654
Query: 648 DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
D A +F G+ Q ++N WLL SIGIGDTIAD +T I I KAK++V N+I++A +
Sbjct: 655 DIAGRFYGNIQTVINNWLLFEGHSIGIGDTIADPQTYNEIQQAIKKAKDDVINVIQKAHN 714
Query: 708 KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINIS 767
LEP PG T+ ++FENKVN++LN ARD+ G SA+KSL+E NNLKAMV +GSKGS INIS
Sbjct: 715 MELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINIS 774
Query: 768 QMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMG 827
Q+ ACVGQQNVEGKRIP+GF RTLPHF KDDYGPESRGFVENSYL GLTP EF+FHAMG
Sbjct: 775 QVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMG 834
Query: 828 GREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE 887
GREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNS+G +IQ YGEDG+ +E
Sbjct: 835 GREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSVGQLIQLRYGEDGLCGELVE 894
Query: 888 SQTLDSLKMKKSEFDKAFRFEMDEENW-NPNYMLQEYIDDLKTIKELRDVFDAEVQKLEA 946
Q + ++K+ F+K F+F+ W N M + + DD+ IKE+ D +A +Q+LEA
Sbjct: 895 FQNMPTVKLSNKSFEKRFKFD-----WSNERLMKKVFTDDV--IKEMTDSSEA-IQELEA 946
Query: 947 DRYQLAT------EIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVD 1000
+ +L + +I +G+S LP NL+R+IWN QK F ++ R P+D+ P+ V++ V
Sbjct: 947 EWDRLVSDRDSLRQIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVK 1006
Query: 1001 KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIES 1060
L ER +V G D +S +A +NATL F L+RST +K V +E RL+ EAFEW++GEIE+
Sbjct: 1007 TLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIET 1066
Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
RF Q+ PGEM+G +AAQS+GEPATQMTLNTFH+AGVS+KNVTLGVPRL+EIIN++KK
Sbjct: 1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKP 1126
Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
K PSL+VFL G E+AKNV C LE+TTLR VT T ++YDPDP T+I ED EFV
Sbjct: 1127 KAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQRTVISEDQEFVN 1186
Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNA 1240
YYEMPD D P +ISPWLLRIEL+R+ M DKKL+M +AEKIN F +DL CIFNDDNA
Sbjct: 1187 VYYEMPDFD--PTRISPWLLRIELDRKRMTDKKLTMEQIAEKINVGFGEDLNCIFNDDNA 1244
Query: 1241 DKLILRIRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------- 1286
DKL+LRIRIMN+E K + DE+ EDD+FL+ IE+NML++M L+G+
Sbjct: 1245 DKLVLRIRIMNNEENKFQDEDEAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLP 1304
Query: 1287 -----------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
+++ V+ DVD RT+SN + EI +VLGIE
Sbjct: 1305 QTDSKKRIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIE 1364
Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
AVR+++ E+ V+ F G YVNYRHLA+LCD MT +GHLMAITRHGINR DTG +MRCSF
Sbjct: 1365 AVRKSVEKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSF 1424
Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPS 1435
EETVD+L+DAA AE+D +RGV+ENI++GQL +GTG L L+ E + IE+ L +
Sbjct: 1425 EETVDVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTLGN 1484
Query: 1436 YMEG-----LEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAF 1490
M G + G TP+ +P TP+ + +P Y FSP +S +T GG +F
Sbjct: 1485 SMLGGAAMFIGGGSTPSMTP-PMTPWAN-CNTPRY-FSPPGHVSAMTP-------GGPSF 1534
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS--PGYSPTSPGYSPTSPTYSPSSPGYS 1548
SP+++ S SP +SP+ PG SP+SPG S + P SP YSPTSP Y+ SSPG +
Sbjct: 1535 SPSAASDASGMSPSWSPAHPGSSPSSPGPSMSPYFPASPSVSPSYSPTSPNYTASSPGGA 1594
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-- 1606
SP YSP+SP+YSPTSP Y+ SP Y+ T+P+++P S YSP+S YSPTSP YSPT
Sbjct: 1595 --SPNYSPSSPNYSPTSPLYA--SPRYASTTPNFNPQSTGYSPSSSGYSPTSPVYSPTVQ 1650
Query: 1607 ---SPAYSPT-SPAYSPTSP----------------------------------AYSPTS 1628
SP+++ + S YSP + YSPTS
Sbjct: 1651 FQSSPSFAGSGSNIYSPGNAYSPSSSNYSPNSPSYSPTSPSYSPSSPSYSPTSPCYSPTS 1710
Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS--------------------- 1667
PSYSPTSP+Y+P +PSYSPTSP+YS SP YSP SPAYS
Sbjct: 1711 PSYSPTSPNYTPVTPSYSPTSPNYS-ASPQYSPASPAYSQTGVKYSPTSPTYSPPSPSYD 1769
Query: 1668 --PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
P SP Y+P SP YSP SP YSPTSP Y+P S ++SPS YSP+ S YS TSP
Sbjct: 1770 GSPGSPQYTPGSPQYSPASPKYSPTSPLYSPSSPQHSPSNQYSPT------GSTYSATSP 1823
Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--GYSPSAPGY 1783
YSP S YSP+S YSP+SPTY+P++ +YSP+SP YSP+A YSP++P Y
Sbjct: 1824 RYSPNMSIYSPSSTKYSPTSPTYTPTAR--------NYSPTSPMYSPTAPSHYSPTSPAY 1875
Query: 1784 SPSS 1787
SPSS
Sbjct: 1876 SPSS 1879
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 11/72 (15%)
Query: 1730 TSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA--------GYSPSAP 1781
T+SS SP+YSPSSP YSP+SP A +P Y+ ++P ++P + GYSP++P
Sbjct: 1587 TASSPGGASPNYSPSSPNYSPTSPLYA---SPRYASTTPNFNPQSTGYSPSSSGYSPTSP 1643
Query: 1782 GYSPSSTSQYTP 1793
YSP+ Q +P
Sbjct: 1644 VYSPTVQFQSSP 1655
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens GN=POLR2A
PE=1 SV=2
Length = 1970
Score = 1791 bits (4640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)
Query: 15 VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +C+TC N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
K RL + D CK K CEGG+E+D V +G+E L K KG GCG QP++ G++
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 185 MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
+ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198 LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 245 ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
I+ VLP+PP VRP+ DDLTH+LA I++ N LRR E+NGA AH+I+E +
Sbjct: 249 IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308
Query: 295 LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309 LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 355 PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKYIIRD+G
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425
Query: 415 RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426 RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485
Query: 475 LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL
Sbjct: 486 LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545
Query: 535 RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP IN RT
Sbjct: 546 RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605
Query: 595 AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
+ H D+ D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D
Sbjct: 606 HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
R F + Q ++N WLL +IGIGD+IAD+KT + I +TI KAK +V +I++A + L
Sbjct: 666 RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+
Sbjct: 726 EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786 AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+ +E Q
Sbjct: 846 GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
L +LK F+K FRF+ E + ++ + D+ + +++ + E +++ DR
Sbjct: 906 LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
L I +GDS LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V
Sbjct: 966 LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
G+DPLS +AQ+NATL FNI LRST S+R+ +E RL+ EAF+W++GEIES+F Q++ PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204
Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
A +ISPWLLR+EL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262
Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
N + K + +E +DDVFL+ IESNMLT+M L+
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322
Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
GV+L+ V+ +DVD RTTSN ++EI VLGIEAVR+AL EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382
Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442
Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
A ESD ++GV+ENIMLGQLAP GTG L L+ E K +E+ +P G+
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502
Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
FG P SP+ G TP++ G +P Y SP + +P G FSP+++
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552
Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
S SPGYSP+ SPG S Y P SPG SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610
Score = 177 bits (448), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)
Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
SP YSPTSP YSPTSP YSPTSP +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/111 (79%), Positives = 95/111 (85%), Gaps = 3/111 (2%)
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
SP+YSPTSP YSPTSP YSPTSP YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 88/111 (79%), Positives = 96/111 (86%), Gaps = 3/111 (2%)
Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
Y+PTSP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
SP+YSPTSP YSPTSP+YSPTSP +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963
Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 88/115 (76%), Positives = 97/115 (84%), Gaps = 4/115 (3%)
Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
Y+PTSP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
SP+YSPTSP YSPTSP+YSPTSP S YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963
Score = 163 bits (413), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/112 (75%), Positives = 95/112 (84%), Gaps = 4/112 (3%)
Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
++PTS P YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSP
Sbjct: 1853 YTPTS-PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1911
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
TSP YSPTSP YSPTSP+YSPTSP +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
Y+PTSP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
SPTYSPTSP Y+P S YSP+SP+ S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1963
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/130 (61%), Positives = 89/130 (68%), Gaps = 30/130 (23%)
Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
Y+PTSP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP
Sbjct: 1853 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900
Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
Y+P+SP+ YSPTSP YSPTS YSPTSP+YSP+SP TYSP+S P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945
Query: 1762 DYSPSSPQYS 1771
YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus GN=Polr2a
PE=1 SV=3
Length = 1970
Score = 1791 bits (4640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 914/1620 (56%), Positives = 1156/1620 (71%), Gaps = 112/1620 (6%)
Query: 15 VRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
++ VQFG+LSPDE+++MSV + I++ ETTE G+PK GGL DPR G I+R +C+TC N
Sbjct: 18 IKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGN 77
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NP 130
M ECPGHFGH+ELAKP+FH+GF+ + ++R VCF CSK+L D ++ K K L P
Sbjct: 78 MTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDILAKSKGQP 137
Query: 131 KNRLKKILDACKNKTKCEGGDEID----VPGQDGEEPLKKNKG--GCGAQQPKLTIEGMK 184
K RL + D CK K CEGG+E+D V +G+E L K KG GCG QP++ G++
Sbjct: 138 KKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLE 197
Query: 185 MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
+ AE+K N+D + E+K L+ ERV + KRISDE+C +LG+ P+YARP+WM
Sbjct: 198 LYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWM 248
Query: 245 ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
I+ VLP+PP VRP+ DDLTH+LA I++ N LRR E+NGA AH+I+E +
Sbjct: 249 IVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVK 308
Query: 295 LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
LLQFH+AT DNELPG PRA Q+SGRP+KS+ RLK KEGR+RGNLMGKRVDFSARTVIT
Sbjct: 309 LLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVIT 368
Query: 355 PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
PDP ++IDQ+GVP SIA N+T+ E VTP+NI+RL+ELV G PG AKYIIRD+G
Sbjct: 369 PDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG---AKYIIRDNGD 425
Query: 415 RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
R+DLR+ K SD HL+ GYKVERH+ DGD V+FNRQP+LHKMS+MGHR++I+P+STFRLN
Sbjct: 426 RIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLN 485
Query: 475 LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
LSVT+PYNADFDGDEMN+H+PQS ETRAE+ EL MVP+ IV+PQSNRPVMGIVQDTL
Sbjct: 486 LSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAV 545
Query: 535 RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
RK TKRD F+E+ MN+LM+ +DGKVPQP ILKPRPLWTGKQ+F+LIIP IN RT
Sbjct: 546 RKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRT 605
Query: 595 AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
+ H D+ D G ++ GDT V +E GEL+ G LCKK+LGTS GSL+H+ + E+G D
Sbjct: 606 HSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDIT 665
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
R F + Q ++N WLL +IGIGD+IAD+KT + I +TI KAK +V +I++A + L
Sbjct: 666 RLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNEL 725
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
EP PG T+ ++FEN+VN++LN ARD+ GSSAQKSLSE NN K+MV +G+KGS INISQ+
Sbjct: 726 EPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVI 785
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
A VGQQNVEGKRIPFGF RTLPHF KDDYGPESRGFVENSYL GLTP EFFFHAMGGRE
Sbjct: 786 AVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGRE 845
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+ V+Q YGEDG+ +E Q
Sbjct: 846 GLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQN 905
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
L +LK F+K FRF+ E + ++ + D+ + +++ + E +++ DR
Sbjct: 906 LATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFERMREDREV 965
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
L I +GDS LP NL R+IWNAQK F ++PR PSD+HP++VVE V +L ++L +V
Sbjct: 966 LRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVN 1024
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
G+DPLS +AQ+NATL FNI LRST S+R+ +E RL+ EAF+W++GEIES+F Q++ PG
Sbjct: 1025 GDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPG 1084
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++KK KTPSL+VFL
Sbjct: 1085 EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLL 1144
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
ERAK++ C LE+TTLR VT T ++YDP+P T++ ED E+V YYEMPD D+
Sbjct: 1145 GQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDV 1204
Query: 1191 APEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIM 1250
A +ISPWLLR+EL+R+ M D+KL+M +AEKIN F DDL CIFNDDNA+KL+LRIRIM
Sbjct: 1205 A--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM 1262
Query: 1251 NDEAPKGELNDE---SAEDDVFLKKIESNMLTEMALR----------------------- 1284
N + K + +E +DDVFL+ IESNMLT+M L+
Sbjct: 1263 NSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII 1322
Query: 1285 -----------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
GV+L+ V+ +DVD RTTSN ++EI VLGIEAVR+AL EL
Sbjct: 1323 TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL 1382
Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEETVD+L++A
Sbjct: 1383 YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA 1442
Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL--QLPSYME----GLE 1441
A ESD ++GV+ENIMLGQLAP GTG L L+ E K +E+ +P G+
Sbjct: 1443 AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMF 1502
Query: 1442 FGMTPARSPVSG-----TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP 1496
FG P SP+ G TP++ G +P Y SP + +P G FSP+++
Sbjct: 1503 FGSAP--SPMGGISPAMTPWNQG-ATPAY-----GAWSPSVGSGMTP--GAAGFSPSAAS 1552
Query: 1497 GYSPSSPGYSPS------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP-GYSP 1549
S SPGYSP+ SPG S Y P SPG SP YSPTSP Y P SP GY+P
Sbjct: 1553 DASGFSPGYSPAWSPTPGSPGSPGPSSPYIP-SPG-GAMSPSYSPTSPAYEPRSPGGYTP 1610
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/111 (78%), Positives = 95/111 (85%), Gaps = 3/111 (2%)
Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
Y+P SP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 1607 SPAYSPTSPAYSPTSPAYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1654
SP YSPTSP YSPTSP YSPTSP +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963
Score = 174 bits (441), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 87/111 (78%), Positives = 94/111 (84%), Gaps = 3/111 (2%)
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
Y+P SP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPG---YSPTSPSYSPTSPTYSPTSPSYNP 1696
SP+YSPTSP YSPTSP YSPTSP YSPTSP YSPTSPTYS TSP+ +P
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963
Score = 174 bits (440), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 87/111 (78%), Positives = 95/111 (85%), Gaps = 3/111 (2%)
Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
Y+P SP YSPTSP YSPTSP YSP+SP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 1579 SPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPAYSPTSPAYSP 1626
SP+YSPTSP YSPTSP+YSPTSP +YSPTSP YSPTSP YS TSPA SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963
Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 87/115 (75%), Positives = 96/115 (83%), Gaps = 4/115 (3%)
Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
Y+P SP YSPTSP YSP+SP YSPTSP YSPT+P YSPTSP+YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
SP+YSPTSP YSPTSP+YSPTSP S YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSPTYSPTSPKGS----TYSPTSPGYSPTSPTYSLTSPAISP 1963
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/108 (75%), Positives = 92/108 (85%), Gaps = 3/108 (2%)
Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1553
+SP YSP+SP YSP+SP YSPTSP YSPT+P YSPTSP YSPTSP Y+P+SP YSPTSP
Sbjct: 1856 ASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPT 1915
Query: 1554 YSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1598
YSPTSP YSPTSP+YSPTSP +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1916 YSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 93/120 (77%), Gaps = 9/120 (7%)
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
Y+P SP YSPTSP YSPTSP YSPTSP+YSPT+P YSPTSP YSPTSP Y+PTSP YSPT
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 1912
Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
SPTYSPTSP Y+P S YSP+SP+ S YSPTSP YSPTS +YS TSP+ SP
Sbjct: 1913 SPTYSPTSPKYSPTSP------TYSPTSPK---GSTYSPTSPGYSPTSPTYSLTSPAISP 1963
Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/105 (75%), Positives = 89/105 (84%), Gaps = 4/105 (3%)
Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
+SPTS P YSP+SP YSP+SP YSPT+P YSPTSP YSPTSP Y+PTSP YSP+SP YSP
Sbjct: 1860 YSPTS-PKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSP 1918
Query: 1550 TSPAYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSYSP 1591
TSP YSPTSP+YSPTSP +YSPTSP YSPTSP+YS TSP+ SP
Sbjct: 1919 TSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISP 1963
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 79/130 (60%), Positives = 88/130 (67%), Gaps = 30/130 (23%)
Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
Y+P SP YSPTSP YSPTSP YSPTSP YSPT+P YSPTSPTYSPTSP
Sbjct: 1853 YTPASPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSP------------ 1900
Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP---TYSPSSPYNAGGGNP 1761
Y+P+SP+ YSPTSP YSPTS YSPTSP+YSP+SP TYSP+S P
Sbjct: 1901 -VYTPTSPK------YSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTS--------P 1945
Query: 1762 DYSPSSPQYS 1771
YSP+SP YS
Sbjct: 1946 GYSPTSPTYS 1955
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 1727 bits (4474), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 877/1626 (53%), Positives = 1138/1626 (69%), Gaps = 117/1626 (7%)
Query: 10 AEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
A + V VQFGIL P+EI++MSV +E E E GKPK GGL DPR G IDR+ +C TC
Sbjct: 10 APLRTVCRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKMGGLMDPRQGVIDRRGRCMTC 69
Query: 70 TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR- 128
N+ +CPGHFGHLELAKP+FHIGF+ L I+R VCF C ++L D+ + + LK
Sbjct: 70 AGNLTDCPGHFGHLELAKPVFHIGFLTKSLKILRCVCFYCGRLLIDKTNPRVMDILKKTS 129
Query: 129 -NPKNRLKKILDACKNKTKCEGG--------DEIDVPGQDGEEPLKKNKGGCGAQQPKLT 179
NPK RL I D CK+K+ CEG D++D P +G KK GCG QP
Sbjct: 130 GNPKKRLALIYDLCKSKSVCEGAAEKEDGLPDDMDDPMNEG----KKVPAGCGRYQPSYR 185
Query: 180 IEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
G+ + AE+K + N+D + ERK LTAERVL V K+I+DED ++G++P++A
Sbjct: 186 RVGIDINAEWK--KNVNEDTQ------ERKIMLTAERVLEVFKQITDEDILVIGMDPQFA 237
Query: 240 RPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHII 289
RP+WMI VLP+PP VRP+ DDLTH+L+ II+ N+ L+R E NGA AH++
Sbjct: 238 RPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVL 297
Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 349
++ +LLQ+H+AT DN +PG P ATQ+ GRP+KSI RLK KEGRIRGNLMGKRVDFSA
Sbjct: 298 TDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSA 357
Query: 350 RTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 409
RTVIT DP + ID +GVP +IA NLT+PE VTP+N+++L+ELV G PG AKYII
Sbjct: 358 RTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPG---AKYII 414
Query: 410 RDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYS 469
R++G R+DLRY +++D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+S
Sbjct: 415 RENGARVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWS 474
Query: 470 TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQD 529
TFR+NLSVTSPYNADFDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQD
Sbjct: 475 TFRMNLSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQD 534
Query: 530 TLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
TL R +TKRD FI+ M++LM+ +DGKVPQP ILKP+PLWTGKQVF+LIIP +
Sbjct: 535 TLCAVRMMTKRDIFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNV 594
Query: 590 NLFRTAAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
N+ RT + H D+ D G ++ GDT V IE GELLSG +C KT+G S G+L+HV+ E+
Sbjct: 595 NVLRTHSTHPDSEDSGPYKWISPGDTKVLIEHGELLSGIVCSKTVGKSAGNLLHVVALEL 654
Query: 646 GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
G + A F H Q ++N WLL+ +IGIGDTIAD T I +TI KAK +V ++I++A
Sbjct: 655 GHEIAANFYSHIQTVINAWLLREGHTIGIGDTIADQSTYLDIQNTIRKAKQDVVDVIEKA 714
Query: 706 QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
+ LEP PG T+ ++FENKVNQ+LN ARD GSSAQKSLSE NN K+MV +GSKGS IN
Sbjct: 715 HNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKIN 774
Query: 766 ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
ISQ+ ACVGQQNVEGKRIPFGF RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHA
Sbjct: 775 ISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHA 834
Query: 826 MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
MGGREGLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+D +W
Sbjct: 835 MGGREGLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMW 894
Query: 886 IESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDD-LKTIKELRD---VFDAEV 941
+E+Q + ++K + F++ FR ++ + ++ + Y +D ++ I+E +D + ++E
Sbjct: 895 VENQNMPTMKPNNAVFERDFRMDLTDN----KFLRKNYSEDVVREIQEAQDGISLVESEW 950
Query: 942 QKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDK 1001
+LE DR +L +I GD+ LP NL+RLIWNAQK FKVD R+P ++ P+ V+ V +
Sbjct: 951 SQLEEDR-RLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRE 1009
Query: 1002 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESR 1061
L ++L +V G D +S +AQ NATL NILLRST +K++ +L EAF+W++GEIE+R
Sbjct: 1010 LSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETR 1069
Query: 1062 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
F Q++ PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K++K
Sbjct: 1070 FQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKQLK 1129
Query: 1122 TPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKS 1181
TPSL+VFL E+AK+V C LE+TTL+ VT T ++YDPDP T+I ED E+V
Sbjct: 1130 TPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSI 1189
Query: 1182 YYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
+YEMPD D+ + SPWLLRIEL+R+ MVDKKL+M +A++I+ F D+ I+ DDNA+
Sbjct: 1190 FYEMPDHDLT--RTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGQDVHTIYTDDNAE 1247
Query: 1242 KLILRIRIMNDE--APKGELNDESAEDDVFLKKIESNMLTEMALRGV------------- 1286
KL+ R+RI ++ A E + EDDVFL+ IE+NML+++ L+G+
Sbjct: 1248 KLVFRLRIAGEDKGAEGQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNT 1307
Query: 1287 ---------------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
LL V+ +D RTTSN + EI EVLGIEAV
Sbjct: 1308 DDKKRIIITPEGGFKAVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAV 1367
Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
R+++ E+ VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR + G +MRCSFEE
Sbjct: 1368 RKSIEKEMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEE 1427
Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEG 1439
TVDIL++A+V AE D ++GV+ENIMLGQLA GTG L L+ E K+ +E+ M
Sbjct: 1428 TVDILMEASVHAEVDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKHGMEIPQNVVMGA 1487
Query: 1440 LEFG----------MTPARSPVSG--TPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGG 1487
+G +PA SP + TP + G SP SP+ SP + GG
Sbjct: 1488 GIYGGGFAGSPSREFSPAHSPWNSGVTPNYSGPWSPTGGMSPSAGFSPAGNLD-----GG 1542
Query: 1488 MAFSPTSSPGYSPSSPG-----YSPSSPGYSPTSPG-YSPTSPGYSPTSPGYSPTSPTYS 1541
SP + G+SP+SPG SP +P Y SPG YSP SPG+S TSP YSPTSP+YS
Sbjct: 1543 A--SPFNEGGWSPASPGDPLGALSPRTPAYGGMSPGVYSPASPGFSMTSPHYSPTSPSYS 1600
Query: 1542 PSSPGY 1547
P+SP +
Sbjct: 1601 PTSPAH 1606
Score = 169 bits (427), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/134 (70%), Positives = 110/134 (82%), Gaps = 14/134 (10%)
Query: 1539 TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYS----------PTSPSYSPTSPSYSPTSPS 1588
TYSP+SP YSPTSP YSPTSP+YSPTSPSY P+SP+YSPTSPSYSPTSP
Sbjct: 1685 TYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQ 1744
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSP-AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
YSPTSP YSP+SP+Y+P+SP Y+PTSP A+S SP YSPTSP+YSPTSPSY+P+SP YSP
Sbjct: 1745 YSPTSPQYSPSSPTYTPSSPTYNPTSPRAFS--SPQYSPTSPTYSPTSPSYTPSSPQYSP 1802
Query: 1648 TSPSYSPTSPSYSP 1661
TSP+Y+P SP+ P
Sbjct: 1803 TSPTYTP-SPADQP 1815
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/152 (55%), Positives = 107/152 (70%), Gaps = 28/152 (18%)
Query: 1651 SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS----------PTSPTYSPTSPSYNPQSAK 1700
+YSPTSP+YSPTSP YSPTSP YSPTSPSY P+SPTYSPTSPSY+P S +
Sbjct: 1685 TYSPTSPTYSPTSPTYSPTSPTYSPTSPSYEGYSPSSPKYSPSSPTYSPTSPSYSPTSPQ 1744
Query: 1701 YSPSLAYSPSSPRLSPASP-YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGG 1759
YSP+ SP+ SP+SP Y+P+SP Y+PTS + +SP YSP+SPTYSP+SP
Sbjct: 1745 YSPT------SPQYSPSSPTYTPSSPTYNPTSPR-AFSSPQYSPTSPTYSPTSP------ 1791
Query: 1760 NPDYSPSSPQYSPSA-GYSPSAPGYSPSSTSQ 1790
Y+PSSPQYSP++ Y+PS P P +++Q
Sbjct: 1792 --SYTPSSPQYSPTSPTYTPS-PADQPGTSNQ 1820
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis elegans
GN=ama-1 PE=1 SV=3
Length = 1856
Score = 1723 bits (4463), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 882/1629 (54%), Positives = 1135/1629 (69%), Gaps = 134/1629 (8%)
Query: 15 VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETCTANMA 74
V VQFGIL P+EI++MSV +E E E GKPK GGL DPR G IDR+ +C TC N+
Sbjct: 15 VSRVQFGILGPEEIKRMSVAHVEFPEVYENGKPKLGGLMDPRQGVIDRRGRCMTCAGNLT 74
Query: 75 ECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR--NPKN 132
+CPGHFGHLELAKP+FHIGF+ L I+R VCF C ++L D+ + + LK N K
Sbjct: 75 DCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFYCGRLLIDKSAPRVLEILKKTGTNSKK 134
Query: 133 RLKKILDACKNKTKCEGGDEID--------VPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
RL I D CK K+ CEG E + P DG KK GGCG QP G+
Sbjct: 135 RLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMNDG----KKVAGGCGRYQPSYRRVGID 190
Query: 185 MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
+ AE+K + N+D + ERK LTAERVL V ++I+DED ++G++P++ARP+WM
Sbjct: 191 INAEWK--KNVNEDTQ------ERKIMLTAERVLEVFQQITDEDILVIGMDPQFARPEWM 242
Query: 245 ILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
I VLP+PP VRP+ DDLTH+L+ II+ N+ L+R E NGA AH++++ +
Sbjct: 243 ICTVLPVPPLAVRPAVVTFGSAKNQDDLTHKLSDIIKTNQQLQRNEANGAAAHVLTDDVR 302
Query: 295 LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
LLQFH+AT DN +PG P ATQ+ GRP+KSI RLK KEGRIRGNLMGKRVDFSARTVIT
Sbjct: 303 LLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDFSARTVIT 362
Query: 355 PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
DP + ID +GVP +IA NLT+PE VTP+N+++L+ELV G PG AKYIIR++G
Sbjct: 363 ADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPG---AKYIIRENGA 419
Query: 415 RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
R+DLRY +++D HL+ GY+VERH+ DGD ++FNRQP+LHKMS+MGHR+KI+P+STFR+N
Sbjct: 420 RVDLRYHPRAADLHLQPGYRVERHMKDGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMN 479
Query: 475 LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
LSVTSPYNADFDGDEMN+H+PQS ETRAE+ E+ MVP+ +++PQ+N+PVMGIVQDTL
Sbjct: 480 LSVTSPYNADFDGDEMNLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAV 539
Query: 535 RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
R +TKRD FI+ M++LM+ +DGKVPQP ILKP+PLWTGKQVF+LIIP +N+ RT
Sbjct: 540 RMMTKRDVFIDWPFMMDLLMYLPTWDGKVPQPAILKPKPLWTGKQVFSLIIPGNVNVLRT 599
Query: 595 AAWHADN-DKG---ILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
+ H D+ D G ++ GDT V IE GELLSG +C KT+G S G+L+HV+ E+G + A
Sbjct: 600 HSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIA 659
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
F H Q ++N WL++ +IGIGDTIAD T I +TI KAK +V ++I++A + L
Sbjct: 660 ANFYSHIQTVINAWLIREGHTIGIGDTIADQATYLDIQNTIRKAKQDVVDVIEKAHNDDL 719
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
EP PG T+ ++FENKVNQ+LN ARD GSSAQKSLSE NN K+MV +GSKGS INISQ+
Sbjct: 720 EPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQVI 779
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
ACVGQQNVEGKRIPFGF RTLPHF KDDYGPES+GFVENSYL GLTP EFFFHAMGGRE
Sbjct: 780 ACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFFFHAMGGRE 839
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKT+ETGYIQRRL+KAME +MV YDGTVRNSL ++Q YGEDG+D +W+E+Q
Sbjct: 840 GLIDTAVKTAETGYIQRRLIKAMESVMVNYDGTVRNSLAQMVQLRYGEDGLDGMWVENQN 899
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDD-LKTIKELRD---VFDAEVQKLEA 946
+ ++K + F++ FR ++ + ++ + Y +D ++ I+E D + ++E +LE
Sbjct: 900 MPTMKPNNAVFERDFRMDLTDN----KFLRKNYSEDVVREIQESEDGISLVESEWSQLEE 955
Query: 947 DRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERL 1006
DR +L +I GD+ LP NL+RLIWNAQK FKVD R+P ++ P+ V+ V +L ++L
Sbjct: 956 DR-RLLRKIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKL 1014
Query: 1007 KVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSL 1066
+V G D +S +AQ NATL NILLRST +K + + +L EAF+W++GEIESRF Q++
Sbjct: 1015 IIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAI 1074
Query: 1067 VAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS 1126
PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+EIINV+K +KTPSL+
Sbjct: 1075 AQPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKTLKTPSLT 1134
Query: 1127 VFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP 1186
VFL E+AK+V C LE+TTL+ VT T ++YDPDP T+I ED E+V +YEMP
Sbjct: 1135 VFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKNTVIAEDEEWVSIFYEMP 1194
Query: 1187 DEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
D D++ + SPWLLRIEL+R+ MVDKKL+M +A++I+ F +D+ I+ DDNA+KL+ R
Sbjct: 1195 DHDLS--RTSPWLLRIELDRKRMVDKKLTMEMIADRIHGGFGNDVHTIYTDDNAEKLVFR 1252
Query: 1247 IRIMNDEAPKGELNDESA---EDDVFLKKIESNMLTEMALRGV----------------- 1286
+RI ++ KGE +E EDDVFL+ IE+NML+++ L+G+
Sbjct: 1253 LRIAGED--KGEAQEEQVDKMEDDVFLRCIEANMLSDLTLQGIPAISKVYMNQPNTDDKK 1310
Query: 1287 -----------------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
LL V+ +D RTTSN + EI EVLGIEAVR+A+
Sbjct: 1311 RIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAI 1370
Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
E+ VISFDGSYVNYRHLA+LCD MT +GHLMAITRHGINR + G +MRCSFEETVDI
Sbjct: 1371 EREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDI 1430
Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMEGLEFG 1443
L++AAV AE D ++GV+ENIMLGQLA GTG L L+ E K +E+ M G +G
Sbjct: 1431 LMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEKCKYGMEIPQNVVMGGGFYG 1490
Query: 1444 ----------MTPARSPVSG--TPYHDGM--------MSPGYLFSPNLRLSPVTDAQFSP 1483
+PA SP + TP + G MSPG FSP + TD SP
Sbjct: 1491 SFAGSPSNREFSPAHSPWNSGVTPTYAGAAWSPTTGGMSPGAGFSP----AGNTDGGASP 1546
Query: 1484 YVGGMAFSPTSSPGYSPSSPG-----YSPSSPGYSPTSPG-YSPTSPGYSPTSPGYSPTS 1537
+ G G+SP+SPG SP +P Y SPG YSP+SP +S TSP YSPTS
Sbjct: 1547 FNEG---------GWSPASPGDPLGALSPRTPSYGGMSPGVYSPSSPQFSMTSPHYSPTS 1597
Query: 1538 PTYSPSSPG 1546
P+YSP+SP
Sbjct: 1598 PSYSPTSPA 1606
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 85/130 (65%), Positives = 99/130 (76%), Gaps = 5/130 (3%)
Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP-YSPTS 1724
YSPTSP YSPTSP+YSPTSPTYSPTSPSY S YSPSSP SP SP YSPTS
Sbjct: 1686 YSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTS 1745
Query: 1725 PNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSPSAPGY 1783
P YSPTS YSP+SP+Y+PSSPTY+P+SP G +P YSP+SP YSP++ Y+PS+P Y
Sbjct: 1746 PQYSPTSPQYSPSSPTYTPSSPTYNPTSP--RGFSSPQYSPTSPTYSPTSPSYTPSSPQY 1803
Query: 1784 SPSSTSQYTP 1793
SP+S + YTP
Sbjct: 1804 SPTSPT-YTP 1812
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 63/95 (66%), Gaps = 21/95 (22%)
Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSP-YNAGGG------------------NPDYSPSS 1767
YSPTS +YSPTSP+YSP+SPTYSP+SP Y +GGG +P YSP+S
Sbjct: 1686 YSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTS 1745
Query: 1768 PQYSPSA-GYSPSAPGYSPSSTSQYTPQTNRDDST 1801
PQYSP++ YSPS+P Y+PSS + Y P + R S+
Sbjct: 1746 PQYSPTSPQYSPSSPTYTPSSPT-YNPTSPRGFSS 1779
>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1
Length = 1752
Score = 1711 bits (4432), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 891/1604 (55%), Positives = 1128/1604 (70%), Gaps = 94/1604 (5%)
Query: 7 YSPAEV--AKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLGTIDR 62
+SP+ V +V VQFGILSP+EIR MSV +IE ET + +P+ GGL DPRLGTIDR
Sbjct: 6 FSPSSVPLRRVEEVQFGILSPEEIRSMSVAKIEFPETMDESGQRPRVGGLLDPRLGTIDR 65
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
+ KC+TC MA+CPGHFGH+ELAKP+FHIGF+ + I+ VC+NC K+ D + KF
Sbjct: 66 QFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWNCGKLKIDSSNPKFN 125
Query: 123 QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEP-LKKNKGGCGAQQPKLTIE 181
+ R+PKNRL + + CK K C+ G D P GGCGA QP + +
Sbjct: 126 DTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAAQPTIRKD 185
Query: 182 GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
G+++ + K+ D+ LPE K+ L+ V + IS ED LGLN +YARP
Sbjct: 186 GLRLWGSW----KRGKDESDLPE----KRLLSPLEVHTIFTHISSEDLAHLGLNEQYARP 237
Query: 242 DWMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
DWMI+ VLP+PPP V R DDLTH+L+ II+ N N+RR E+ GAPAHI+SE
Sbjct: 238 DWMIITVLPVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCEQEGAPAHIVSE 297
Query: 292 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
+ QLLQFH+ATY DNE+ GQP+A Q+SGRP+KSI +RLK KEGR+RGNLMGKRVDFSART
Sbjct: 298 YEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSART 357
Query: 352 VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
VIT DP +++D+LGVP SIA LTYPETVTPYNI +L+ELV GP P GAKYIIRD
Sbjct: 358 VITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHP---GAKYIIRD 414
Query: 412 DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
G+R+DLRY K++ D L G++VERH+ DGD V+FNRQPSLHKMS+MGHRI++MPYSTF
Sbjct: 415 TGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQPSLHKMSMMGHRIRVMPYSTF 474
Query: 472 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
RLNLSVTSPYNADFDGDEMNMHVPQS ETRAE+ E+ MVPK IVSPQSN+PVMGIVQDTL
Sbjct: 475 RLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTL 534
Query: 532 LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
G RK + RD F+ ++ MNI++W D+DG +P P ILKP+ LWTGKQ+ +LIIPK INL
Sbjct: 535 AGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGINL 594
Query: 592 FRTAAWHADNDKGILTA-GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 650
R D+DK L+ D+ + IE GE++ G + KKT+G S G L+H IW+E GP+
Sbjct: 595 IR------DDDKQSLSNPTDSGMLIENGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEIC 648
Query: 651 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSL 710
+ F Q +VNYWLL N FSIGIGDTIADA TM+ + T+ +A+ V I+ AQ L
Sbjct: 649 KGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTVKEARRQVAECIQDAQHNRL 708
Query: 711 EPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 770
+PEPG T+ ESFE KV+++LN ARD AG SA+ SL +SNN+K MV AGSKGSFINISQM+
Sbjct: 709 KPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMS 768
Query: 771 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 830
ACVGQQ VEGKRIPFGF RTLPHF KDD PESRGF+ENSYLRGLTPQEFFFHAM GRE
Sbjct: 769 ACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTPQEFFFHAMAGRE 828
Query: 831 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQT 890
GLIDTAVKT+ETGYIQRRLVKAMED+MV+YDGTVRN++GD+IQF YGEDG+D+ +E Q
Sbjct: 829 GLIDTAVKTAETGYIQRRLVKAMEDVMVRYDGTVRNAMGDIIQFAYGEDGLDATLVEYQV 888
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
DSL++ +F+K +R ++ E+ YM +D ++D+ D E +L ADR
Sbjct: 889 FDSLRLSTKQFEKKYRIDLMEDRSLSLYMENSIEND----SSVQDLLDEEYTQLVADREL 944
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
L I GD+ WPLPVN++R+I NA + F ++ ++P+D+ P +++ +++L +L +
Sbjct: 945 LCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFR 1004
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
G D ++ + Q NATL F ILLRS FA KRV+ E+RL + AFEW++GE+E+RF Q++V+PG
Sbjct: 1005 GSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPG 1064
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EI+NVAK IKTPSL+++L
Sbjct: 1065 EMVGTLAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEILNVAKNIKTPSLTIYLM 1124
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
P + + + AKNVQ +E+TTL +VT ATE+ YDPDP T+IEED +FV++++ +PDE++
Sbjct: 1125 PWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEV 1184
Query: 1191 APE--KISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
K SPWLLR+EL+R M+DKKLSM+ VA KI + F+ DL I+++DNADKLI+R R
Sbjct: 1185 EENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKIAESFERDLFTIWSEDNADKLIIRCR 1244
Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV---------------------- 1286
I+ D+ K E +D E+DVFLK IE +ML ++LRGV
Sbjct: 1245 IIRDDDRKAEDDDNMIEEDVFLKTIEGHMLESISLRGVPNITRVYMMEHKIVRQIEDGTF 1304
Query: 1287 -------------NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
NL M E VDA RT SN +EI+++LGIEA R ALL ELR VI F
Sbjct: 1305 ERADEWVLETDGINLTEAMTVEGVDATRTYSNSFVEILQILGIEATRSALLKELRNVIEF 1364
Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
DGSYVNYRHLA+LCD MT RGHLMAITRHGINR +TG +MRCSFEETV+IL+DAA E
Sbjct: 1365 DGSYVNYRHLALLCDVMTSRGHLMAITRHGINRAETGALMRCSFEETVEILMDAAASGEK 1424
Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKN-AIELQLPSYMEGLEFGMTPARSPV- 1451
D +G++ENIMLGQLAP+GTG +YL+ +ML N ++ +P+ GM ++ P
Sbjct: 1425 DDCKGISENIMLGQLAPMGTGAFDIYLDQDMLMNYSLGTAVPTLAGS---GMGTSQLPEG 1481
Query: 1452 SGTPYHDG-MMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSP 1510
+GTPY M+ G++ SP+ A FSP V G + Y +SP
Sbjct: 1482 AGTPYERSPMVDSGFVGSPDA-------AAFSPLVQGGSEGREGFGDYGL----LGAASP 1530
Query: 1511 GYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1554
SPGY TSP S SPGY TSP+YSPSSP TSPAY
Sbjct: 1531 YKGVQSPGY--TSPFSSAMSPGYGLTSPSYSPSSP-GYSTSPAY 1571
>sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB1 PE=3 SV=2
Length = 1745
Score = 1605 bits (4157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/1586 (52%), Positives = 1097/1586 (69%), Gaps = 110/1586 (6%)
Query: 5 FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDR 62
FPYS A + ++ VQFG+ SP+E+R +SV +IE ET + + + K GGL+DPRLG+IDR
Sbjct: 4 FPYSSAPLRTIKEVQFGLFSPEEVRAISVAKIEFPETMDETQMRAKVGGLNDPRLGSIDR 63
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
KC+TC M +CPGHFGH+ELAKP+FHIGF+ + + VC +C K+L DE + +
Sbjct: 64 NFKCQTCGEGMNDCPGHFGHIELAKPVFHIGFISKIKKVCECVCMHCGKLLLDEYNELMR 123
Query: 123 QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKK-NKGGCGAQQPKLTIE 181
QA+KI++PK R + CK K C+ +VP +D +P K ++GGCG QP + +
Sbjct: 124 QAIKIKDPKRRFNAVWSLCKAKMVCD----TEVPSED--DPSKYISRGGCGNAQPSIRKD 177
Query: 182 GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARP 241
G+ ++ +K + KN + PE K+ ++AE +L V K IS ED LG N ++RP
Sbjct: 178 GLSLVGTWK--KDKNAEDADQPE----KRIISAEEILNVFKHISPEDSWRLGFNEDFSRP 231
Query: 242 DWMILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
+WM+L VLP+PPPPV R DDLT++L I++ N N++R E NG+P H+I E
Sbjct: 232 EWMLLTVLPVPPPPVRPSISFNESQRGEDDLTYKLGDILKANINVQRLEINGSPQHVIQE 291
Query: 292 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
LLQFH+ATY DN++ GQP+A Q+SGRPIKSI +RLK KEGRIRGNLMGKRVDFSART
Sbjct: 292 SESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDFSART 351
Query: 352 VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
VI+ DP +++DQ+GVP SIA LTYPE VTPYNI+RL +LV GP+ PG AKY+IRD
Sbjct: 352 VISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRD 408
Query: 412 DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
+G R+DLRY K++ D L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K+MPYSTF
Sbjct: 409 NGDRIDLRYSKRAGDIQLQYGWKVERHIMDDDPVLFNRQPSLHKMSMMAHRVKVMPYSTF 468
Query: 472 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
RLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L VP IVSPQSN+P MGIVQDTL
Sbjct: 469 RLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTL 528
Query: 532 LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
G RK+T RDTFIE D +N+L W D+DG +P PTILKP+PLW+GKQ+ ++ IP I+L
Sbjct: 529 CGIRKMTLRDTFIELDQVLNMLYWIPDWDGVIPTPTILKPKPLWSGKQLLSMAIPSGIHL 588
Query: 592 FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAR 651
R D L+ D + I G+++ G + KKT+G+S+G LIHV+ E GP+
Sbjct: 589 QRF-----DEGTTYLSPKDNGMLIIDGQIIFGVVDKKTVGSSSGGLIHVVTREKGPEVCA 643
Query: 652 KFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLE 711
K G+ Q +VNYWLL N FSIGIGDTIAD KTM I D I+ AK V+ + K+AQ L
Sbjct: 644 KLFGNIQKVVNYWLLHNGFSIGIGDTIADEKTMREITDAIALAKKKVEEVTKEAQANLLT 703
Query: 712 PEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTA 771
+ G T+ ESFE+ V + LN ARD+AG SA+ +L + NN+K MV+AGSKGSFINI+QM+A
Sbjct: 704 AKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVSAGSKGSFINIAQMSA 763
Query: 772 CVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREG 831
CVGQQ+VEGKRI FGF DRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREG
Sbjct: 764 CVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREG 823
Query: 832 LIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTL 891
LIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT RNSLG++IQF+YGEDGMD+ IE Q++
Sbjct: 824 LIDTAVKTAETGYIQRRLVKALEDIMVHYDGTTRNSLGNIIQFVYGEDGMDAAHIEKQSI 883
Query: 892 DSLKMKKSEFDKAFRFEMDEENWNPNYMLQ--------EYIDDLKTIKELRDVFDAEVQK 943
D++ F+K +R ++ NPNY L E + DLK L+++ D E ++
Sbjct: 884 DTIPGSDLAFEKRYRIDL----LNPNYALDPNLLESGTEIVGDLK----LQNLLDEEYKQ 935
Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
L DR+ L +I G+ +WPLPVN++R+I NAQ+TF++D +P+D+ +VV+ V LQ
Sbjct: 936 LVQDRHFL-RKIFMDGEHNWPLPVNIRRIIQNAQQTFRIDSTKPTDLSIQDVVQGVRGLQ 994
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
ERL V+ G+ + EAQ+NA F LLRS A++RV+ E+RLT++ FEWV+ IE++FL
Sbjct: 995 ERLLVLRGKSQILQEAQENAITLFCCLLRSRLATRRVITEYRLTKQTFEWVLNNIEAQFL 1054
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTP 1123
+S+V PGEM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTP
Sbjct: 1055 RSIVHPGEMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTP 1114
Query: 1124 SLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYY 1183
SL+V+L+ + +E+AK ++ A+E+TTL+SVT A+E++YDPDP T+IEED E ++ ++
Sbjct: 1115 SLTVYLEESYATDQEKAKLIRSAIEHTTLKSVTVASEIYYDPDPSSTVIEEDEEIIQLHF 1174
Query: 1184 EMPDEDIAP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNAD 1241
+ DE+ + SPWLLR+EL+R M DK L+M V EKI + F +DL I+++DNA+
Sbjct: 1175 SLMDEETEASLKHQSPWLLRLELDRVAMTDKDLTMGQVGEKIKETFKNDLFVIWSEDNAE 1234
Query: 1242 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR----------------- 1284
KLI+R R++ D PK + AE+D LKKIE+ ML + LR
Sbjct: 1235 KLIIRCRVVRD--PKTLDAEAEAEEDHMLKKIENTMLESITLRGVQDITRVVMMKYDRKV 1292
Query: 1285 ------------------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDE 1326
GVNL VM VD R +N I+I+ VLGIEA R AL E
Sbjct: 1293 PSETGEYHKIPEWVLETDGVNLSEVMSVPGVDPTRIYTNSFIDIMNVLGIEAGRAALYKE 1352
Query: 1327 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1386
+ VI+ DGSYVNYRH+A+L D MT +G LM++TRHG NR DTG +MRCSFEETV+IL +
Sbjct: 1353 VYNVIASDGSYVNYRHMALLVDVMTSQGFLMSVTRHGFNRADTGALMRCSFEETVEILFE 1412
Query: 1387 AAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMT 1445
A AE D GV+EN++LGQ+APIGTG + ++DE ++K E +L + +E + G T
Sbjct: 1413 AGAAAELDDCSGVSENVILGQMAPIGTGSFDVMIDDESLIKYMPEQKLSTAVEVNDGGAT 1472
Query: 1446 PARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDA---------QFSPYVG---GMAFSPT 1493
P S G+++ L SP+ +A F+ Y G G A SP
Sbjct: 1473 PYNSDA-------GLVNTKVDIKDELMFSPLVEAGTSDAIASGGFTAYGGADYGGATSPF 1525
Query: 1494 SSPGYSPSSPGYSP-SSPGYSPTSPG 1518
S G P+SPG+ SSPG+SPTSP
Sbjct: 1526 SGYGNGPTSPGFGDVSSPGFSPTSPA 1551
>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1
SV=2
Length = 1733
Score = 1591 bits (4119), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 826/1579 (52%), Positives = 1089/1579 (68%), Gaps = 89/1579 (5%)
Query: 7 YSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKM 64
YS A + V+ VQFG+ SP+E+R +SV +I ET + + + K GGL+DPRLG+IDR +
Sbjct: 6 YSSAPLRTVKEVQFGLFSPEEVRAISVAKIRFPETMDETQTRAKIGGLNDPRLGSIDRNL 65
Query: 65 KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQA 124
KC+TC M ECPGHFGH++LAKP+FH+GF+ + + VC +C K+L DE + +QA
Sbjct: 66 KCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMHCGKLLLDEHNELMRQA 125
Query: 125 LKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
L I++ K R I CK K CE DVP +D L ++GGCG QP + +G+K
Sbjct: 126 LAIKDSKKRFAAIWTLCKTKMVCE----TDVPSEDDPTQLV-SRGGCGNTQPTIRKDGLK 180
Query: 185 MIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWM 244
++ +K R D E PE + L+ E +L + K IS +D LG N ++RP+WM
Sbjct: 181 LVGSWKKDRATGDADE--PEL----RVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWM 234
Query: 245 ILQVLPIPPPPV----------RPSDDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
IL LP+PPPPV R DDLT +LA I++ N +L E NGAP H I E
Sbjct: 235 ILTCLPVPPPPVRPSISFNESQRGEDDLTFKLADILKANISLETLEHNGAPHHAIEEAES 294
Query: 295 LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
LLQFH+ATY DN++ GQP+A Q+SGRP+KSI +RLK KEGRIRGNLMGKRVDFSARTVI+
Sbjct: 295 LLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVIS 354
Query: 355 PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQ 414
DP + +DQ+GVP SIA LTYPE VTPYNI+RL +LV GP+ PG AKY+IRD G
Sbjct: 355 GDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG---AKYVIRDSGD 411
Query: 415 RLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
R+DLRY K++ D L+ G+KVERH+ D D VLFNRQPSLHKMS+M HR+K++PYSTFRLN
Sbjct: 412 RIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLN 471
Query: 475 LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
LSVTSPYNADFDGDEMN+HVPQS ETRAE+ +L VP IVSPQSN+P MGIVQDTL G
Sbjct: 472 LSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTLCGI 531
Query: 535 RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRT 594
RK+T RDTFIE D +N+L W D+DG +P P I+KP+PLW+GKQ+ ++ IP I+L R
Sbjct: 532 RKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQR- 590
Query: 595 AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
D +L+ D + I G+++ G + KKT+G+S G LIHV+ E GP K
Sbjct: 591 ----FDEGTTLLSPKDNGMLIIDGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLF 646
Query: 655 GHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEP 714
G+ Q +VN+WLL N FS GIGDTIAD TM I +TI++AK V ++ K+AQ L +
Sbjct: 647 GNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKKKVLDVTKEAQANLLTAKH 706
Query: 715 GRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG 774
G T+ ESFE+ V + LN ARD+AG A+ +L + NN+K MV AGSKGSFINI+QM+ACVG
Sbjct: 707 GMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVG 766
Query: 775 QQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 834
QQ+VEGKRI FGFVDRTLPHF+KDDY PES+GFVENSYLRGLTPQEFFFHAMGGREGLID
Sbjct: 767 QQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLID 826
Query: 835 TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSL 894
TAVKT+ETGYIQRRLVKA+EDIMV YD T RNSLG+VIQF+YGEDGMD+ IE Q+LD++
Sbjct: 827 TAVKTAETGYIQRRLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTI 886
Query: 895 KMKKSEFDKAFRFEM--DEENWNPNYML--QEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
+ F+K +R ++ + +P+ + E + DLK L+ + D E ++L DR +
Sbjct: 887 GGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLK----LQVLLDEEYKQLVKDR-K 941
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVP 1010
E+ G+++WPLPVN++R+I NAQ+TF +D +PSD+ ++V V LQE L V+
Sbjct: 942 FLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLR 1001
Query: 1011 GEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPG 1070
G++ + AQ++A F LLRS A++RVL+E+RLT++AF+WV+ IE++FL+S+V PG
Sbjct: 1002 GKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPG 1061
Query: 1071 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK 1130
EM+G +AAQSIGEPATQMTLNTFH+AGV++K VT GVPRL+EI+NVAK +KTPSL+V+L+
Sbjct: 1062 EMVGVLAAQSIGEPATQMTLNTFHFAGVASKKVTSGVPRLKEILNVAKNMKTPSLTVYLE 1121
Query: 1131 PGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDI 1190
PG + +E+AK ++ A+E+TTL+SVT A+E++YDPDP T+I ED E ++ ++ + DE+
Sbjct: 1122 PGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTVIPEDEEIIQLHFSLLDEEA 1181
Query: 1191 AP--EKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIR 1248
++ SPWLLR+EL+R M DK L+M V E+I Q F +DL I+++DN +KLI+R R
Sbjct: 1182 EQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKNDLFVIWSEDNDEKLIIRCR 1241
Query: 1249 IMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR------------------------ 1284
++ PK + AE+D LKKIE+ ML + LR
Sbjct: 1242 VVR---PKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERVVMMKYDRKVPSPTGEY 1298
Query: 1285 -----------GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
GVNL VM +D R +N I+I+EVLGIEA R AL E+ VI+
Sbjct: 1299 VKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIEAGRAALYKEVYNVIAS 1358
Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
DGSYVNYRH+A+L D MT +G L ++TRHG NR++TG +MRCSFEETV+IL +A AE
Sbjct: 1359 DGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSFEETVEILFEAGASAEL 1418
Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSLYLNDE-MLKNAIELQLPSYMEGLEFGMTPARSPVS 1452
D RGV+EN++LGQ+APIGTG + +++E ++K E ++ +G + G+TP S S
Sbjct: 1419 DDCRGVSENVILGQMAPIGTGAFDVMIDEESLVKYMPEQKITEIEDGQDGGVTPY-SNES 1477
Query: 1453 GTPYHDGMMSPGYLFSPNLRLSPVTDAQ---FSPYVG---GMAFSPTSSPGYSPSSPGYS 1506
G D + +FSP L S DA F+ Y G G A SP + G +P+SPG+
Sbjct: 1478 GLVNADLDVKDELMFSP-LVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFG 1536
Query: 1507 PSSPGYSPTSPGYSPTSPG 1525
SSPG+SPTSP YSPTSP
Sbjct: 1537 VSSPGFSPTSPTYSPTSPA 1555
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
+PTSP + +SP +SPTSP+YSPTSPA
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
+PTSP + +SP +SPTSP YSPTSPA
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
+PTSP + +SP +SPTSP YSPTSP
Sbjct: 1529 APTSPGFGVSSPGFSPTSPTYSPTSPA 1555
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 22/64 (34%)
Query: 1652 YSPTSPSYS------------------PTSP--AY--SPTSPGYSPTSPSYSPTSPTYSP 1689
+SP S S TSP AY +PTSPG+ +SP +SPTSPTYSP
Sbjct: 1492 FSPLVDSGSNDAMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSP 1551
Query: 1690 TSPS 1693
TSP+
Sbjct: 1552 TSPA 1555
>sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB1 PE=3 SV=1
Length = 1599
Score = 1273 bits (3294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 682/1491 (45%), Positives = 936/1491 (62%), Gaps = 134/1491 (8%)
Query: 10 AEVAK-VRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCET 68
A+V K ++ +QFG+ SPDE+R SV I H E E G PK GGL D R+GT DR C++
Sbjct: 4 AKVKKQIKSIQFGLFSPDEVRNGSVALIVHPEVMEGGVPKTGGLIDLRMGTTDRMYLCQS 63
Query: 69 CTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKI- 127
C + CPGHFGH+EL KPMFH+G++ + ++ VCF CSKI KI
Sbjct: 64 CGGDNFSCPGHFGHIELTKPMFHVGYISKIKKVLECVCFYCSKI-------------KIP 110
Query: 128 -RNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMI 186
+ K+ L + K ++ CEG E L + GCG +QP + EG+ ++
Sbjct: 111 RKGIKSTLSNVWGMSKGRSVCEG------------EVLDNGRSGCGNKQPVIKREGLTLV 158
Query: 187 AEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMIL 246
A K + E E K L ERV + K+ISDED +G + KY+RP+WMIL
Sbjct: 159 AFMKGE-----------ESNEGKVMLNGERVYSIFKKISDEDSVYMGFDLKYSRPEWMIL 207
Query: 247 QVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLL 296
VL +PPP VRPS DDLTH+LA II+ N L++ E+ GAP HI+ ++ QLL
Sbjct: 208 TVLLVPPPAVRPSIVMEGSLRGEDDLTHKLADIIKSNGYLKKYEQEGAPGHIVRDYEQLL 267
Query: 297 QFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPD 356
QFH+AT+ DN++ G P+A Q+SGRP+KS+ +RLK KEGRIRGNLMGKRVDFSARTVITPD
Sbjct: 268 QFHVATFIDNDIGGLPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDFSARTVITPD 327
Query: 357 PTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRL 416
P I+++++GVP IA T+PE VT +NI+RL++LV GP+ PG A Y++R DGQ++
Sbjct: 328 PNISLEEVGVPLEIAKIHTFPEKVTSFNIDRLEKLVRAGPNEHPG---ANYVLRSDGQKI 384
Query: 417 DLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLS 476
DL + SD LE GY VERH+ GD VLFNRQPSLHKMS+M H ++M TFRLNLS
Sbjct: 385 DLNF--NRSDIRLEEGYVVERHMQSGDVVLFNRQPSLHKMSMMAHYARVMGNKTFRLNLS 442
Query: 477 VTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRK 536
VTSPYNADFDGDEMN+H+PQS+ ++AE+ EL +V + I+SPQSN+PVMGIVQDTL G R
Sbjct: 443 VTSPYNADFDGDEMNLHMPQSYTSKAELEELALVSRQIISPQSNKPVMGIVQDTLTGLRL 502
Query: 537 ITKRDTFIEKDVFMNILMW--------------------WEDFD--GKVPQPTILKPRPL 574
T RDTF+ + M++L +D+D + +P I KP L
Sbjct: 503 FTLRDTFLNEREVMSLLYAVNLEFCDIPLGDAVQTGLRKGKDYDIMKILRKPAIAKPMRL 562
Query: 575 WTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTST 634
WTGKQV + ++P +N ++ H D+DK GDT V I+ G + SG + KK G +
Sbjct: 563 WTGKQVLSFVLP-NLNYIGLSSEHDDDDKE--NIGDTRVIIQDGYIHSGVIDKKAAGATQ 619
Query: 635 GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQ-NAFSIGIGDTIADAKTMETINDTISK 693
G L+H+I+ + GP A +F Q ++N ++ + FS+GIGDTIAD KT++ + I K
Sbjct: 620 GGLVHIIFNDFGPKRAAQFFDGVQRMINAFMTGIHTFSMGIGDTIADPKTVKVVESAIRK 679
Query: 694 AKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKA 753
AK V LI+ A+ LE PG TM ESFE+ +N VLN ARD +G+SAQ+SLSE+NN+K
Sbjct: 680 AKEEVSALIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKT 739
Query: 754 MVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYL 813
MV AGSKGSFINISQ+TACVGQQNVEGKRIPFGF RTLPHF KDDY +SRGFVENSYL
Sbjct: 740 MVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGKSRGFVENSYL 799
Query: 814 RGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQ 873
GL P+EFFFHAMGGREGLIDTA+KT+ETGYIQRRLVKA+ED +V+ D +VR+ G V Q
Sbjct: 800 TGLDPEEFFFHAMGGREGLIDTAIKTAETGYIQRRLVKALEDAIVRQDESVRSGNGLVYQ 859
Query: 874 FLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKEL 933
YGEDG D+ ++ESQ +D K + F E E + +E L + +L
Sbjct: 860 IKYGEDGFDATFLESQKVDVKNFTKRYYIDMFGTE--ELEIKHGQVSEEVYGMLSSDVDL 917
Query: 934 RDVFDAEVQKLEADRYQ-----LATEIATSGD--------SSWPLPVNLKRLIWNAQKTF 980
+ + D E + L + ++ E+ D S+ P N R++ A++TF
Sbjct: 918 QKLLDQEYEWLVGEIFEGPPILSVGEVDIERDYKVRDIYQSAVMSPCNFTRILATAKRTF 977
Query: 981 KVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRV 1040
+ D+ P ++EA L +++ N+L+R+ + KRV
Sbjct: 978 HLS---TGDVSPYYILEAHKHLTTSNRIL------------------NVLIRTNLSVKRV 1016
Query: 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
L EHRL EAF WV+ I+++ L++ + P EM+G +AAQS+GEPATQMTLNTFH AGV A
Sbjct: 1017 LLEHRLNTEAFNWVVEVIDAKILKAKITPNEMVGTLAAQSVGEPATQMTLNTFHLAGV-A 1075
Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATE 1160
VT+GVPRL+EI NV K +KTPS+ ++L + E AK +Q +E T++ + +E
Sbjct: 1076 STVTMGVPRLKEIFNVTKNLKTPSMKIYLDREHGKSIEAAKTIQNEIECLTVKDLCLFSE 1135
Query: 1161 VWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVA 1220
++YDP+ GT I +D +FV++Y+E PDED+ +SP+L+R+ ++R +V + +++ VA
Sbjct: 1136 IYYDPEITGTEISDDKDFVEAYFEFPDEDVDFSCLSPFLMRLVVDRAKLVGRGINLEYVA 1195
Query: 1221 EKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFL-------KKI 1273
I +E I +D+NA +++R+R E LN + + L K +
Sbjct: 1196 MFIRKELGGGAHVICSDENAVNMVVRVRTTKSEDE--SLNFYTTALNSLLRLQLGGYKNV 1253
Query: 1274 ESNMLTE--------MALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLD 1325
+ ++E + G+ L ++ + V++R T SN L+EI E LGIEA R ++L
Sbjct: 1254 KKVYISEDKDRKEWYLQTDGICLSQILGNPAVNSRLTISNDLVEIAETLGIEAARESILR 1313
Query: 1326 ELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILL 1385
EL +VI +GSYVNYRH+++L D MT RG+L ITRHG+N+ G + R SFEETV+ILL
Sbjct: 1314 ELTIVIDGNGSYVNYRHMSLLADVMTMRGYLCGITRHGVNKVGAGALKRSSFEETVEILL 1373
Query: 1386 DAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSY 1436
DAA+ +E + RG+TENIM+GQLAP+GTG+ + L+ + L AI L P +
Sbjct: 1374 DAALVSEKNICRGITENIMMGQLAPMGTGNIEIMLDMKKLDKAIPLSNPVF 1424
>sp|P17546|RPB1A_TRYBB DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei
brucei GN=TRP4.8 PE=1 SV=1
Length = 1766
Score = 1082 bits (2799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 665/1747 (38%), Positives = 964/1747 (55%), Gaps = 147/1747 (8%)
Query: 5 FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGT-IDRK 63
P S E+ KV VQF I +I+ +V +EH ++ + G S + +
Sbjct: 7 LPVSQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYANAADQSGEASMICVWVPLTSN 66
Query: 64 MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
CETC ECPGHFG++ELA+P+F+IG VL +++ VC C +L + + +
Sbjct: 67 SACETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHK 126
Query: 124 ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKG---------GCGAQ 174
L+ NRL+++ + K + E D+ G DG + N G GCGA
Sbjct: 127 KLQHVTGLNRLRQVAKMAEAKCRVSTSTEDDM-GIDGFDSAPFNGGSGMGPGATRGCGAS 185
Query: 175 QPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGL 234
QP+++ + Y K +EQ E A++V VL R+SD+D +L+G
Sbjct: 186 QPRVS----RFYGIYPTLVIKAVHEEQDAE-------WHADKVRQVLDRVSDDDARLMGF 234
Query: 235 NPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAP 285
+P+ P ++L VLP+PPP VRP+ D+LTHQ+ I++ N LRR + +
Sbjct: 235 DPQRCHPRDLVLTVLPVPPPQVRPAISFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQ 294
Query: 286 AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
A I A LLQ H+ATYF+N + +KS+ RLK K GR+RGNLMGKRV
Sbjct: 295 AAIDRSRA-LLQEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRV 353
Query: 346 DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
DFSARTVIT DP I++D++GVP+S+A+ LT+PE V N +RL E +P A
Sbjct: 354 DFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEFARRTVYP-----SA 408
Query: 406 KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
YI +G L L+ S L +G VERH+ +GD VLFNRQP+LH+MS+MGHR+++
Sbjct: 409 NYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRV 468
Query: 466 MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
+ YSTFRLNLS T+PYNADFDGDEMN+HVPQS T+AE++E+MMVPK VSP + P MG
Sbjct: 469 LNYSTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMG 528
Query: 526 IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
IVQD+LLG ++T +DTF++K ++ +W + + ++P P ILKPRPLWTGKQVF+LI+
Sbjct: 529 IVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLW--QLPIPAILKPRPLWTGKQVFSLIL 586
Query: 586 PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
P ++N T D+ D++V I +G+LL G + K +G + GSLIHVI+ E
Sbjct: 587 P-EVNHPATP-----QDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEH 640
Query: 646 GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
G D +F+ Q + ++LL FS+G+ DT+AD+ T+ +ND + K + NV+ + A
Sbjct: 641 GSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAA 700
Query: 706 QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
+++L + G T+++SFE VN LN R+EA A ++ +N+ K M+ AGSKG+ +N
Sbjct: 701 NNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLN 760
Query: 766 ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
I Q+ VGQQNV G RIPFGF RTLPHF DDYG SRG Y+ GL P EFFFH
Sbjct: 761 ICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHT 820
Query: 826 MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
M GREGLIDTAVKTS+TGY+QR+L+KA+ED+ YDGTVRN+ ++IQF+YGEDG+D
Sbjct: 821 MAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGAR 880
Query: 886 IESQTLDSLKMK-KSEFDKAFRFEMDEENWNPNYMLQEYID---------DLKTIKELRD 935
IE L L + E + +++E D + + Y+D D + +++L++
Sbjct: 881 IEGGQLFPLPFRDDKEMEDTYKYEYDVDGTFSGKVGGNYMDPHVRKMLRADPQNVRKLQE 940
Query: 936 VFDAEVQKLEADR--YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPM 993
E ++L ADR + ++ LPVN RLI NA+ T + S++ P+
Sbjct: 941 ----EYEQLTADREWSRKMLDLEDRDKLKLNLPVNPGRLIQNARSTMG-KRSQVSNLSPI 995
Query: 994 EVVEAVDKLQERL-KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKE 1043
+++ V KLQE L K+ P + LS E ++A FN+ LR ASKRVLKE
Sbjct: 996 TIIDHVRKLQEDLMKLFPSYHRGGDGYIRNTLSRERIESALTLFNVHLRQLLASKRVLKE 1055
Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
++L AFE+++ EI +++ QSL PGE IG +AAQS GEPATQMTLNTFH AG+S+KNV
Sbjct: 1056 YKLNDRAFEYLLKEIRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNV 1115
Query: 1104 TLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWY 1163
TLGVPRL E++NV++ K S++V L P + K A+ Q +EY TL S+T + Y
Sbjct: 1116 TLGVPRLLELLNVSRNQKHASMTVSLFPPYDE-KRNAQKAQHLIEYCTLESITRRIQFIY 1174
Query: 1164 DPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKI------SPWLLRIELNREMMVDKKLSMA 1217
DPDP T++E D + ++ + + DE A +I SPW++R+EL+ +M+ DK L M
Sbjct: 1175 DPDPRHTVVEADRDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDKALDMK 1234
Query: 1218 AVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEA----PKGELNDESAEDDVFLK-- 1271
V + I + + + +N + +R+R +E PK + + V L+
Sbjct: 1235 DVKQAILRVDESYIIETGMANNVRQRTIRMRSRYNEGADSIPKLKREIPALLARVHLRGI 1294
Query: 1272 ---------------------KIESNMLTEMALRGVNL---LAVMCHED----VDARRTT 1303
K+ N + + G L + ED ++A +T+
Sbjct: 1295 PGVRRALLKDTTEFTVDQATGKMSGNKIWAIDTDGTALRRAFIGVVGEDGKNIINAVKTS 1354
Query: 1304 SNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHG 1363
SN + E+ +LGIEA R +L ELR G +NYRH IL DT+ G+LMA++R G
Sbjct: 1355 SNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVSRSG 1414
Query: 1364 INRNDT-GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLND 1422
INR+DT GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG A +GTG L LN
Sbjct: 1415 INRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDLVLNM 1474
Query: 1423 EMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPV---TDA 1479
L+ A+ Q + G + + YH S G N++ S D
Sbjct: 1475 AALQQAVP-QAEAVAPGKDVNV-----------YH----SLGSTLQQNIQSSIAYRPRDH 1518
Query: 1480 QFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT 1539
+P+V + G SS + S+P Y+P++ + + TSP
Sbjct: 1519 DATPFVNNASLFLRQGFGGGSSSAPVTASAP-YNPSTTYHGGRLEASAVHRSQAYSTSPA 1577
Query: 1540 Y------SPSSPGYS--PTSPAYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1590
+ +S YS ++ A++P S S + + S S +PTS S
Sbjct: 1578 LEYGGREASASQMYSVMSSASAFNPVSTRMSSVAHSYSEYSEASSYHLQHSVAPTSMQAS 1637
Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTS-PAYSPTSPAYSPTSPSYSPTSPSYSPTS---PSYS 1646
S T S Y+P + + +P S Y+ T S + S S ++ P+ S
Sbjct: 1638 LPRTDNSMTMQGIGSVSVPYTPHAMSSAAPPSQVYASTEVGRSHSEDSRSQSALYVPTLS 1697
Query: 1647 PTSPSYS 1653
PT Y+
Sbjct: 1698 PTHAGYA 1704
>sp|P17545|RPB1B_TRYBB DNA-directed RNA polymerase II subunit RPB1-B OS=Trypanosoma brucei
brucei GN=TRP5.9 PE=1 SV=1
Length = 1766
Score = 1082 bits (2798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 664/1747 (38%), Positives = 964/1747 (55%), Gaps = 147/1747 (8%)
Query: 5 FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGT-IDRK 63
P S E+ KV VQF I +I+ +V +EH ++ + G S + +
Sbjct: 7 LPVSQMELHKVNEVQFEIFKERQIKSYAVCLVEHAKSYANAADQSGEASMICVWVPLTSN 66
Query: 64 MKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQ 123
CETC ECPGHFG++ELA+P+F+IG VL +++ VC C +L + + +
Sbjct: 67 SACETCHRKHPECPGHFGYIELAEPVFNIGVFDLVLLVLKCVCKTCGALLLNTREQDVHK 126
Query: 124 ALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKG---------GCGAQ 174
L+ NRL+++ + K + E D+ G DG + N G GCGA
Sbjct: 127 KLQHMTGLNRLRQVAKMAEAKCRVSTSTEDDM-GIDGFDSAPFNGGSGMGPGATRGCGAS 185
Query: 175 QPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGL 234
QP+++ + Y K +EQ E A++V VL R+SD+D +L+G
Sbjct: 186 QPRVS----RFYGIYPTLVIKAVHEEQDAE-------WHADKVRQVLDRVSDDDARLMGF 234
Query: 235 NPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAP 285
+P+ P ++L VLP+PPP VRP+ D+LTHQ+ I++ N LRR + +
Sbjct: 235 DPQRCHPRDLVLTVLPVPPPQVRPAISFGGLRSDDELTHQIMSIVKRNNQLRRDKESDVQ 294
Query: 286 AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
A I A LLQ H+ATYF+N + +KS+ RLK K GR+RGNLMGKRV
Sbjct: 295 AAIDRSRA-LLQEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRV 353
Query: 346 DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
DFSARTVIT DP I++D++GVP+S+A+ LT+PE V N +RL E +P A
Sbjct: 354 DFSARTVITGDPNIDVDEVGVPFSVAMTLTFPERVNTINKKRLTEFARRTVYP-----SA 408
Query: 406 KYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKI 465
YI +G L L+ S L +G VERH+ +GD VLFNRQP+LH+MS+MGHR+++
Sbjct: 409 NYIHHPNGTITKLALLRDRSKVTLNIGDVVERHVINGDVVLFNRQPTLHRMSMMGHRVRV 468
Query: 466 MPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMG 525
+ Y+TFRLNLS T+PYNADFDGDEMN+HVPQS T+AE++E+MMVPK VSP + P MG
Sbjct: 469 LNYNTFRLNLSCTTPYNADFDGDEMNLHVPQSLLTKAELIEMMMVPKNFVSPNKSAPCMG 528
Query: 526 IVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLII 585
IVQD+LLG ++T +DTF++K ++ +W + + ++P P ILKPRPLWTGKQVF+LI+
Sbjct: 529 IVQDSLLGSYRLTDKDTFLDKYFVQSVALWLDLW--QLPIPAILKPRPLWTGKQVFSLIL 586
Query: 586 PKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEV 645
P ++N T D+ D++V I +G+LL G + K +G + GSLIHVI+ E
Sbjct: 587 P-EVNHPATP-----QDRPPFPHNDSVVMIRRGQLLCGPITKSIVGAAPGSLIHVIFNEH 640
Query: 646 GPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQA 705
G D +F+ Q + ++LL FS+G+ DT+AD+ T+ +ND + K + NV+ + A
Sbjct: 641 GSDEVARFINGVQRVTTFFLLNFGFSVGVQDTVADSDTLRQMNDVLVKTRRNVEKIGAAA 700
Query: 706 QDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFIN 765
+++L + G T+++SFE VN LN R+EA A ++ +N+ K M+ AGSKG+ +N
Sbjct: 701 NNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALSNVRRTNSFKVMIEAGSKGTDLN 760
Query: 766 ISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHA 825
I Q+ VGQQNV G RIPFGF RTLPHF DDYG SRG Y+ GL P EFFFH
Sbjct: 761 ICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGETSRGMANRGYVEGLKPHEFFFHT 820
Query: 826 MGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
M GREGLIDTAVKTS+TGY+QR+L+KA+ED+ YDGTVRN+ ++IQF+YGEDG+D
Sbjct: 821 MAGREGLIDTAVKTSDTGYLQRKLIKALEDVHAAYDGTVRNANDELIQFMYGEDGLDGAR 880
Query: 886 IESQTLDSLKMK-KSEFDKAFRFEMDEENWNPNYMLQEYID---------DLKTIKELRD 935
IE L L + E + +++E D + + Y+D D + +++L++
Sbjct: 881 IEGGQLFPLPFRDDKEMEDTYKYEYDVDGTFSGKVGGNYMDPHVRKMLRADPQNVRKLQE 940
Query: 936 VFDAEVQKLEADR--YQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPM 993
E ++L ADR + ++ LPVN RLI NA+ T + S++ P+
Sbjct: 941 ----EYEQLTADREWSRKMLDLEDRDKLKLNLPVNPGRLIQNARSTMG-KRSQVSNLSPI 995
Query: 994 EVVEAVDKLQERL-KVVPG---------EDPLSVEAQKNATLFFNILLRSTFASKRVLKE 1043
+++ V KLQE L K+ P + LS E ++A FN+ LR ASKRVLKE
Sbjct: 996 TIIDHVRKLQEDLMKLFPSYHRGGDGYIRNTLSRERIESALTLFNVHLRQLLASKRVLKE 1055
Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
++L AFE+++ EI +++ QSL PGE IG +AAQS GEPATQMTLNTFH AG+S+KNV
Sbjct: 1056 YKLNDRAFEYLLKEIRTKYHQSLTTPGENIGAIAAQSCGEPATQMTLNTFHNAGISSKNV 1115
Query: 1104 TLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWY 1163
TLGVPRL E++NV++ K S++V L P + K A+ Q +EY TL S+T + Y
Sbjct: 1116 TLGVPRLLELLNVSRNQKHASMTVSLFPPYDE-KRNAQKAQHLIEYCTLESITRRIQFIY 1174
Query: 1164 DPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKI------SPWLLRIELNREMMVDKKLSMA 1217
DPDP T++E D + ++ + + DE A +I SPW++R+EL+ +M+ DK L M
Sbjct: 1175 DPDPRHTVVEADRDILELEWNVMDESDAELRIQEVVAGSPWVVRLELDVDMVTDKALDMK 1234
Query: 1218 AVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEA----PKGELNDESAEDDVFLK-- 1271
V + I + + + +N + +R+R +E PK + + V L+
Sbjct: 1235 DVKQAILRVDESYIIETGMANNVRQRTIRMRSRYNEGADSIPKLKREIPALLARVHLRGI 1294
Query: 1272 ---------------------KIESNMLTEMALRGVNL---LAVMCHED----VDARRTT 1303
K+ N + + G L + ED ++A +T+
Sbjct: 1295 PGVRRALLKDTTEFTVDQATGKMSGNKIWAIDTDGTALRRAFIGVVGEDGKNIINAVKTS 1354
Query: 1304 SNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHG 1363
SN + E+ +LGIEA R +L ELR G +NYRH IL DT+ G+LMA++R G
Sbjct: 1355 SNKVPEVCSLLGIEAARSKMLTELREAYLAYGLNINYRHYTILVDTICQHGYLMAVSRSG 1414
Query: 1364 INRNDT-GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLND 1422
INR+DT GP+MRCSFEETV +L+ AA F E D +RGV+ N++LG A +GTG L LN
Sbjct: 1415 INRSDTSGPLMRCSFEETVKVLMAAASFGECDPVRGVSANLVLGNQARVGTGLFDLVLNM 1474
Query: 1423 EMLKNAIELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPV---TDA 1479
L+ A+ Q + G + + YH S G N++ S D
Sbjct: 1475 AALQQAVP-QAEAVAPGKDVNV-----------YH----SLGSTLQQNIQSSIAYRPRDH 1518
Query: 1480 QFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT 1539
+P+V + G SS + S+P Y+P++ + + TSP
Sbjct: 1519 DATPFVNNASLFLRQGFGGGSSSAPVTASAP-YNPSTTYHGGRLEASAVHRSQAYSTSPA 1577
Query: 1540 Y------SPSSPGYS--PTSPAYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYS 1590
+ +S YS ++ A++P S S + + S S +PTS S
Sbjct: 1578 LEYGGREASASQMYSVMSSASAFNPVSTRMSSVAHSYSEYSEASSYHLQHSVAPTSMQAS 1637
Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTS-PAYSPTSPAYSPTSPSYSPTSPSYSPTS---PSYS 1646
S T S Y+P + + +P S Y+ T S + S S ++ P+ S
Sbjct: 1638 LPRTDNSMTMQGIGSVSVPYTPHAMSSAAPPSQVYASTEVGRSHSEDSRSQSALYVPTLS 1697
Query: 1647 PTSPSYS 1653
PT Y+
Sbjct: 1698 PTHAGYA 1704
>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1 (Fragments) OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB1 PE=3 SV=2
Length = 1579
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/825 (53%), Positives = 570/825 (69%), Gaps = 56/825 (6%)
Query: 744 SLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPE 803
+L + NN+K MV +GSKGSFINISQM+ACVGQQ VEGKRIPFGF DR+LPHFTKDDY PE
Sbjct: 568 NLKDLNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPE 627
Query: 804 SRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGT 863
S+GFVENSYLRGLTPQEFFFHAM GREGLIDTAVKT+ETGYIQRRLVKA+EDIMV YDGT
Sbjct: 628 SKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDGT 687
Query: 864 VRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEY 923
RNSLGD+IQF+YGEDG+D +ESQ++D + F++ +R ++ + L E
Sbjct: 688 TRNSLGDIIQFVYGEDGVDGTQVESQSVDVIPGTDESFERRYRVDLLDPEKCIRDSLLES 747
Query: 924 IDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVD 983
+++ L+ V D E ++L DR L T+GD +WPLPVNL+R+I NAQ+ F
Sbjct: 748 GKEVRGDVNLQRVLDEEYEQLCNDRRYLREVCFTNGDYTWPLPVNLRRIIQNAQQLFHGG 807
Query: 984 PRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKE 1043
+ SD+ E+VE V +L ++L V+ G+ PL E+Q+NATL F L+RS A++RV++E
Sbjct: 808 RHKASDLRLEEIVEGVKELCKKLLVLRGDSPLVKESQENATLLFQCLVRSRLATRRVIEE 867
Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
RL R +FEW +GEIE++F +SLV PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNV
Sbjct: 868 FRLNRMSFEWAMGEIETQFQKSLVHPGEMVGVIAAQSIGEPATQMTLNTFHYAGVSSKNV 927
Query: 1104 TLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWY 1163
TLGVPRL+EI+NVAK IKTP+L+V+L+ + + E+AK VQ A+E+TTL++VT +TE++Y
Sbjct: 928 TLGVPRLKEILNVAKNIKTPALTVYLEKDIAADIEKAKVVQSAIEHTTLKNVTASTEIFY 987
Query: 1164 DPDPMGTIIEEDVEFVKSYYEMPDEDI--APEKISPWLLRIELNREMMVDKKLSMAAVAE 1221
DPDP T++EED + V++Y+ +PDE + + EK SPWLLR+EL+R M+DK+L+MA VAE
Sbjct: 988 DPDPRSTVLEEDYDTVEAYFAIPDEKVEESIEKQSPWLLRLELDRAKMLDKQLTMAQVAE 1047
Query: 1222 KINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEM 1281
KI+Q F +DL I++DD ADKLI+R R++ D PK D AE+D LK+IE++ML +
Sbjct: 1048 KISQNFGEDLFVIWSDDTADKLIIRCRVVRD--PKSLDEDVDAEEDQILKRIEAHMLESI 1105
Query: 1282 ALR-----------------------------------GVNLLAVMCHEDVDARRTTSNH 1306
+LR GVNL VM VDA+RT SN+
Sbjct: 1106 SLRGIQGITRVFMMQHKLSLPDETGEFKQGQEWVLETDGVNLADVMAVPGVDAKRTYSNN 1165
Query: 1307 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINR 1366
IEI+ VLGIEA R AL E+ VI+FDGSYVNYRH+A+L D MT RGHLMAITRHGINR
Sbjct: 1166 FIEILSVLGIEATRSALFKEILNVIAFDGSYVNYRHMALLVDVMTARGHLMAITRHGINR 1225
Query: 1367 NDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLK 1426
DTG +MRCSFEETV+ILL+A AE D G++EN++LGQLAP+GTG + ++D++L+
Sbjct: 1226 ADTGALMRCSFEETVEILLEAGAAAELDDCHGISENVVLGQLAPLGTGAFDVMVDDKILQ 1285
Query: 1427 NAIELQLPSYME---GLEFGMTPARSPVSGTPYHDGMMSPGYL-FSPNLRLSPVTDAQFS 1482
++ PS M G G TPY + M + F SP+ A S
Sbjct: 1286 SS-----PSNMSVPVGAAEGAGAYADDGGATPYREYDMEDDKIQFEEGAGFSPIHTAPVS 1340
Query: 1483 PYVGGMAFSPTSSPGYSPSSPGYSPSSP-GYSPTSPGYSPTSPGY 1526
G + ++ G P SP SP+SP Y TSP Y SPGY
Sbjct: 1341 DGAGAL-----TAYGGQPGSP--SPTSPFAYGATSPAYGGASPGY 1378
Score = 659 bits (1701), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/578 (57%), Positives = 419/578 (72%), Gaps = 27/578 (4%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRLG 58
M +FP+S A + V+ VQFG+LSP+E+R +SV +IE+ ET ++ +P+ GGL+DPRLG
Sbjct: 1 MSRQFPHSSAPLRSVKEVQFGLLSPEEVRAISVAKIEYPETMDQATKRPREGGLNDPRLG 60
Query: 59 TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
+IDR KC+TC +MAECPGHFGH+ELAKP+FHIGF+ + + VC +C K+L DE +
Sbjct: 61 SIDRNFKCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKVCECVCMHCGKLLLDESN 120
Query: 119 HKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGE--EPLKKNKGGCGAQQP 176
QA++IR+PK R + + CK K CE DV DGE EP + ++GGCG QP
Sbjct: 121 PAMAQAIRIRDPKKRFNAVWNLCKGKMICEA----DVLQDDGEGNEPKRTSRGGCGHTQP 176
Query: 177 KLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNP 236
+ +G+K+ +K + KN D+ + PE ++ LT +L V K I+ EDC LG N
Sbjct: 177 VVRKDGLKLWGTWK--QNKNYDETEQPE----RRLLTPSEILNVFKHINSEDCVRLGFNE 230
Query: 237 KYARPDWMILQVLPIPPP----------PVRPSDDLTHQLAMIIRHNENLRRQERNGAPA 286
YARP+WM++ VLP+PPP R DDLT +LA +I+ N N++R E +G+P
Sbjct: 231 DYARPEWMLITVLPVPPPPVRPSIAFNDTARGEDDLTFKLADVIKANINVQRLELDGSPQ 290
Query: 287 HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
H+ISEF LLQFH+ATY DN++ GQP+A Q++GRPIKSI +RLK KEGR+RGNLMGKRVD
Sbjct: 291 HVISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVD 350
Query: 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
FSARTVI+ DP +++DQ+GVP SIA LTYPE VTPYNI RL E V GP+ PG AK
Sbjct: 351 FSARTVISGDPNLDLDQVGVPISIARTLTYPEIVTPYNIHRLTEYVRNGPNEHPG---AK 407
Query: 407 YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
Y+IRD G R+DLRY K++ D L+ G+KVERHL D D VLFNRQPSLHKMS+M HR+K+M
Sbjct: 408 YVIRDTGDRIDLRYNKRAGDIALQYGWKVERHLMDDDPVLFNRQPSLHKMSMMCHRVKVM 467
Query: 467 PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
PYSTFRLNLSVTSPYNADFDGDEMN+HVPQS ETRAE+ E+ VP IVSPQSN+PVMGI
Sbjct: 468 PYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPETRAELSEICAVPLQIVSPQSNKPVMGI 527
Query: 527 VQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVP 564
VQDTL G RK+T RD FIE D MN+L W D+DG +P
Sbjct: 528 VQDTLCGVRKMTLRDIFIEYDQVMNMLYWIPDWDGVIP 565
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 26/37 (70%)
Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPD 1762
YSPTS +YSPTSP YSP+SP YSP SP + N D
Sbjct: 1538 QYSPTSPAYSPTSPQYSPNSPQYSPRSPLYSPDQNDD 1574
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 14/45 (31%)
Query: 1741 YSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSP 1785
YSP+SP YSP+S P YSP+SPQ YSP +P YSP
Sbjct: 1539 YSPTSPAYSPTS--------PQYSPNSPQ------YSPRSPLYSP 1569
>sp|Q7T6X5|RPO1_MIMIV DNA-directed RNA polymerase subunit 1 OS=Acanthamoeba polyphaga
mimivirus GN=RPO1 PE=1 SV=2
Length = 1495
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/1516 (32%), Positives = 795/1516 (52%), Gaps = 162/1516 (10%)
Query: 12 VAKVRMVQFGILSPDEI-RQMSVVQ---IEHGET--TERGKPKPGGLSDPRLGTIDRKMK 65
+ V ++F I S + I R ++V I ET + +P GG+ D RLG + ++
Sbjct: 15 IETVERIEFCINSNESIIRHSAIVDPNGITEAETFNSNNNEPVQGGVIDKRLGVTESHLE 74
Query: 66 CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQAL 125
C TC CPGHFGH++ +P+FH+G++ + I+ +C C+K+L +++ + +
Sbjct: 75 CSTCGETALRCPGHFGHIKFVEPVFHMGYLIYLKHILSCICIRCNKLLVYKNEKEIAALI 134
Query: 126 KIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIE---- 181
K + K R +I CK T C+ K GCG K++I+
Sbjct: 135 KNKQGKQRFAEIRSICKKVTHCQ-----------------KENYGCGTPAHKISIDKRNG 177
Query: 182 GMKMIAEYKAQRKKNDDQEQLPEPVER-KQTLTAERVLGVLKRISDEDCQLLGLNPKYAR 240
+ ++AE K+ D+ ++ E +R +Q LT + +LK +SDEDC ++G +P +R
Sbjct: 178 NIFLLAE---PVKRTDEYDETGETRKRPQQILTPQLCYDILKSVSDEDCIIMGFDPAKSR 234
Query: 241 PDWMILQVLPIPPPPVRPS------------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
P+ MI+ P+PP VRPS DDLTH+L II+ NENL+ + +G+
Sbjct: 235 PEDMIILNFPVPPVQVRPSIRAEILSSPTMDDDLTHKLIDIIKSNENLKNTKGDGSLIKY 294
Query: 289 --ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
I++ LLQ H+AT+F N++ G R+ Q++ + KS+ RL+ KEGRIRGNLMGKRVD
Sbjct: 295 TSINDDFMLLQLHVATFFANDMAGLARSQQKNKKVTKSMSERLRGKEGRIRGNLMGKRVD 354
Query: 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA- 405
SARTVIT DP I ++++GVP IA NLT+ E VT +NIE L +LV+ G PG
Sbjct: 355 MSARTVITSDPNIALNEVGVPLIIAKNLTFDEIVTEHNIEYLTQLVKNGKRVYPGANFVI 414
Query: 406 KYIIRDDGQRLDLRYLKKSSDHHLEL--GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRI 463
K++I +G Y K D + L G V+R L DGD V+FNRQPSLHK+S+MGH+
Sbjct: 415 KHVIDAEGNESGHIYHLKYVDKPISLKPGDIVKRQLIDGDIVIFNRQPSLHKLSMMGHKC 474
Query: 464 KIMPYS---TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
++P + TFR+N+SVT PYNADFDGDEMN+HVPQS +T E+L + + VSP ++
Sbjct: 475 HVIPDNNLLTFRVNVSVTDPYNADFDGDEMNLHVPQSIQTATEILLIANASRRFVSPATS 534
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWE-DFDGKVPQPTILKPRPLWTGKQ 579
+ QDTL+G T+ D I+ M+ILM D +P+ + +GK
Sbjct: 535 NIAIKAKQDTLMGSYVQTEPDMEIDWRDAMSILMSTSVKLDNDIPKYQNV------SGKF 588
Query: 580 VFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIH 639
+++ IIP+ +N+ + NDK + ++I+ GEL GTL K + S++
Sbjct: 589 LYSQIIPEGLNITKRK-----NDK------EFQLKIKNGELTDGTLGK----SEISSILQ 633
Query: 640 VIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVK 699
IW + G ++F+ Q ++ +L++ +++ I DT+ K + I D I +
Sbjct: 634 RIWFQYGSKETQEFIDDAQRMILQFLMRYGYTVSIKDTVIGEKVNQYIYDLIETKRKETL 693
Query: 700 NLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGS 759
I + + +P ++FE K+ + L + +DE ++ ++ +++ + +++GS
Sbjct: 694 AFITE-----YDNDPYVMTKDAFEIKLQENLKSVQDEIKNTVMRNFDKNSGIFIAISSGS 748
Query: 760 KGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQ 819
G +N Q+ C+GQ VEGKRI F RTLP F K D SRGF NS++ GL P
Sbjct: 749 SGEPMNAGQIAGCIGQVIVEGKRIQIRFNGRTLPMFPKFDDSAFSRGFCRNSFIEGLGPF 808
Query: 820 EFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGED 879
EFFF M GREG+I+TA+KT++TGYIQR+LVK +EDI +YDGTVRN+ G +I +YG++
Sbjct: 809 EFFFQVMAGREGIINTAIKTADTGYIQRKLVKMLEDIKQEYDGTVRNANGKLISCVYGDN 868
Query: 880 GMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDA 939
G+++ Q +D + ++ + + DE Y+++ + D + +L +
Sbjct: 869 GINTENQVDQKIDLISANDNKVRNDYVYTEDE----IKYLIKNHKTDKRYTTDLNNSL-- 922
Query: 940 EVQKLEADRYQ------LATEIATSGDSSWPLPVNLKRLIWNA------QKTFKVDP--- 984
+KL + R Q L + ++ +PV++++ I+N VDP
Sbjct: 923 -YRKLISMRDQLRRIQRLVNLTSAEFKETYKMPVDIQQFIFNIINRDVRNNNVVVDPYYV 981
Query: 985 -RRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKE 1043
+ DM+ + K R + ED +K I L A K+
Sbjct: 982 LKMIKDMYYGS-DSKIMKYNNRTSRIKKED------EKRIKFLMKIYLYDVLAPKKCTHV 1034
Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
++ +++ F+ ++ + + + V GEM+G VAAQSIGEP TQ L +FH +G + K V
Sbjct: 1035 YKFSKQEFDEIVDYFKKTIMLAKVEGGEMVGFVAAQSIGEPVTQTNLKSFHKSG-TGKTV 1093
Query: 1104 TLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWY 1163
+ G+ R++E++ ++K IKTP + L+ + K A + L+YTTLR V E +V Y
Sbjct: 1094 SGGLVRVKELLGISKNIKTPITEIILEEKYKNDKITASRIASYLKYTTLRDVVEKADVIY 1153
Query: 1164 DPDPM---GTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAV- 1219
DP+P G + ++ V+ + + K PW+LRI L++E M+++ ++M +
Sbjct: 1154 DPEPFSKDGLMKKDGVDNIFDQEQGKTGCQTDIKNLPWVLRIMLSKEKMIERNINMLEIK 1213
Query: 1220 ----------------AEKINQEFDDDLTC--IFNDDNADKLILRIRIMNDEAPKGELN- 1260
++ N+ D C + N DN+ I+ +R +A LN
Sbjct: 1214 TSFCRNWGTRNEDKTSKKEFNKVIDKITQCAIVTNYDNSQVPIVHVRF---DANNYNLNT 1270
Query: 1261 ----DESAEDDVFLKKI----ESNMLTE-------------------MALRGVNLLAVMC 1293
E + +K I ESN + E + G+NL +
Sbjct: 1271 LIQFQEMVINTYKIKGISNITESNNIIEESYVDFDDEGNVVKKKQYVIIAEGINLSEMSQ 1330
Query: 1294 HEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYR 1353
+D RT N ++ I E+ G+EA R A + E I G + NY+H+ IL D +T+
Sbjct: 1331 INGIDLLRTKCNDIVTIYEMYGVEAARTAFIKEFTAAIESSGGFSNYQHIEILADAITHM 1390
Query: 1354 GHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGT 1413
G L+ + RHG N+ DT P R SFE+TV+ LL AAVF ESD++R V+ IM+G L GT
Sbjct: 1391 GGLIPVNRHGANKLDTDPFSRASFEKTVEQLLAAAVFGESDHMRSVSARIMVGALINGGT 1450
Query: 1414 GDCSLYLNDEMLKNAI 1429
G L L+ + ++ ++
Sbjct: 1451 GCFDLLLDHKKIQQSL 1466
>sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC
2968) GN=RPC1 PE=3 SV=2
Length = 1457
Score = 764 bits (1973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/1509 (33%), Positives = 789/1509 (52%), Gaps = 154/1509 (10%)
Query: 15 VRMVQFGILSPDEIRQMSVVQIEHGET--TERGK-PKPGGLSDPRLGTIDRKMKCETCTA 71
++ ++FG LS +I S V++ + E+G+ PK GG D ++G +C TC
Sbjct: 13 IKGIEFGALSAKDIIAQSEVEVHTRDLYDLEKGRIPKDGGALDTKMGISSNANECATCHG 72
Query: 72 NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK-FKQALK---I 127
N+A C GHFGH++LA P+FH+G+ K + +++ +C NCS +L DE + F L+ I
Sbjct: 73 NLASCHGHFGHIKLALPVFHVGYFKATIQVLQCICKNCSAVLLDEQTKRSFLNDLRRPHI 132
Query: 128 RNPKNR--LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKM 185
N + LKK+L+ CK + +C + ++ +KK G G K+ + +
Sbjct: 133 DNLRRMKILKKLLEQCKKQRRCLNCNHVN-------GVVKKAASGAGPAALKIVHDTFRW 185
Query: 186 IAEYKAQRKKNDDQE---------QLPEPVER-KQTLTAERVLGVLKRISDEDCQLLGLN 235
I + K D+E +L + V+R L +VL + K+IS DC+LLG++
Sbjct: 186 IGKKATPEKDLWDKEFDEVFSRNPELEKFVKRIHDDLNPLKVLNLFKQISPSDCELLGID 245
Query: 236 -PKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRRQERNGAP 285
+ RP+ I + LP PP +RPS DDLT +L I+ + ++ G
Sbjct: 246 SARGGRPEMYIWRYLPAPPVCIRPSVMMDAQSNEDDLTIKLTEIVWTSSLIKAGIEKGIS 305
Query: 286 AHIISEFAQLLQFHIATYFDNE-----LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 340
+ + E LQ +A Y +++ L +S +PI+ C RLK K+GR RGNL
Sbjct: 306 INNLMEQWDYLQLSVAMYINSDSANPALLPSSGGGSKSSKPIRGFCQRLKGKQGRFRGNL 365
Query: 341 MGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP 400
GKRVDFS RTVI+PDP + ID++ VP +A LTYPE T YN ++L++L+ GP+ P
Sbjct: 366 SGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQKLILSGPNVHP 425
Query: 401 GKTGAKYIIR-DDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSI 458
G A Y+++ ++ + +LR+ + +L +G VERH+ DGD VLFNRQPSLH++SI
Sbjct: 426 G---ANYLLKQNESAKRNLRFGDRVKLAKNLHIGDVVERHIEDGDIVLFNRQPSLHRLSI 482
Query: 459 MGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 518
+ H KI P+ TFRLN V +PYNADFDGDEMN+HVPQ+ E RAE + LM V +++P+
Sbjct: 483 LSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNIHVPQTEEARAEAINLMGVKNNLLTPK 542
Query: 519 SNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGK--VPQPTILKPRPLWT 576
S P++ QD + G ++ +D+F ++ + +L D D + +P P I KP LWT
Sbjct: 543 SGEPIIAATQDFITGSYLVSHKDSFFDRASLVQLLCMMSDADIQFDIPPPAIFKPVMLWT 602
Query: 577 GKQVFNLII-PKQ-----INLFRTAAWHADNDKGI---LTAGDTLVRIEKGELLSGTLCK 627
GKQVF+L+I P + INL + KG ++ D V I ++LSG + K
Sbjct: 603 GKQVFSLLIKPNKKSNVVINLDAKNKTYTPPAKGFPNEMSPNDGFVIIRGSQILSGVMDK 662
Query: 628 KTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMET 686
TLG S+ + I + GPD A + L +L FSIGI D I + +
Sbjct: 663 STLGDGKKHSVFYTILRDYGPDEAANAMNRMAKLCARYLGNRGFSIGINDVIPGSDLKQK 722
Query: 687 INDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLS 746
+ +A LI +LE +PG ++ E K+ +L+ R+E G L
Sbjct: 723 KELMVEQAYLKCDELIDLYNRGNLETQPGCNEEQTLEAKIGGLLSKVREEVGEICINELD 782
Query: 747 ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRG 806
+N M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHFTK+ P+S+G
Sbjct: 783 SANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNSKTPQSKG 842
Query: 807 FVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRN 866
FV NS+ GLTP EF FH++ GREGL+DTAVKT+ETGY+ RRL+K+++D+ +YD TVRN
Sbjct: 843 FVRNSFFSGLTPPEFLFHSISGREGLVDTAVKTAETGYMSRRLMKSLDDLSAQYDHTVRN 902
Query: 867 SLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDD 926
S ++QF YG DG+D +E +++ + F+++++ P Y + E +D
Sbjct: 903 SSNGIVQFTYGGDGLDPFDMEGDARPVNFVRQWDHAYNITFDIEDKGLLP-YQIIELVDS 961
Query: 927 LKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRR 986
+ E R V RY +I DS ++ +A++ F R
Sbjct: 962 ILHPLEDRLV-----------RYDNVGKIIPLEDSDKIEYIDQN----DAEREFYQSIRE 1006
Query: 987 PSDMHPMEVVEAVD-KLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHR 1045
+ ++ E + K+ + P ED + ++ + + N L +
Sbjct: 1007 FTTNKATKLAEIREKKMLKPFLTEPAEDFIRLDESDESLVAINQL-------------SK 1053
Query: 1046 LTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1105
++ + + + ++ ++ V PG +G + AQSIGEP TQMTL TFH+AGV++ NVTL
Sbjct: 1054 VSANSINKFLEQCIYKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1113
Query: 1106 GVPRLREIINVAKKIKTPSLSVFLKPGVNSTKE-RAKNVQCALEYTTLRSVTEATEVWYD 1164
GVPR++EIIN +K I TP ++ L VN E A+ V+ +E T L
Sbjct: 1114 GVPRIKEIINASKVISTPIINSVL---VNDDDEIAARVVKGRVEKTLL------------ 1158
Query: 1165 PDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKIN 1224
EDV + ED+ ++ ++I+LN + +L++ ++A I
Sbjct: 1159 ---------EDVAYFI-------EDVYKNNMAYLSIKIDLNTIEKLQLELNIESIAHSIA 1202
Query: 1225 QE-----FDDDLTCIFNDDNADKLILR----IRIMNDEAPKGELNDESAEDDVFLK---- 1271
D++ D + LR I +M + + + D S + +F +
Sbjct: 1203 NAPKLKILAGDVSVTGKDRINVLVTLREPKSINLMKNASADYKGTDASIVNSLFFRMQHL 1262
Query: 1272 --------------------KIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEII 1311
I + E+ + G L VM + V +T++NH++E+
Sbjct: 1263 KRALPRICIKGLPDISRAVINIRDDGKKELLVEGYGLKEVMSTDGVVGTKTSTNHILEVF 1322
Query: 1312 EVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP 1371
+VLGIEA R +++ E+ +S G V+ RH+ +L D MTY+G ++ ITR G+++
Sbjct: 1323 QVLGIEAARASIIGEIDYTMSKHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSV 1382
Query: 1372 MMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIEL 1431
+ SFE+T D L DA+ + ++D + GV+E I+LGQ IGTG L + ++ K A+E+
Sbjct: 1383 LQLASFEKTTDHLFDASFYMKNDKIEGVSECIILGQTMNIGTGAFKLVNSFDVDKKALEM 1442
Query: 1432 QLPSYMEGL 1440
+ P+ EG+
Sbjct: 1443 K-PTLFEGM 1450
>sp|P11512|RPOA1_SULAC DNA-directed RNA polymerase subunit A' OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoA1 PE=3 SV=2
Length = 880
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/893 (43%), Positives = 547/893 (61%), Gaps = 61/893 (6%)
Query: 15 VRMVQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKCETCTANM 73
+R V+FG+LSP+EIRQMSV I E E G P GG+ DP+LG I+ KC C +
Sbjct: 6 IRGVKFGVLSPNEIRQMSVTAIITSEVYDEDGTPIEGGVMDPKLGVIEPGQKCPVCGNTL 65
Query: 74 AECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI-LADEDDHKFKQ---ALKIRN 129
A CPGHFGH+EL KP+ HIG++K + +RS C+ C +I + ++D ++K+ A+K+R
Sbjct: 66 AGCPGHFGHIELIKPVIHIGYVKHIYDFLRSTCWRCGRIKIKEQDLERYKRIYNAIKLRW 125
Query: 130 PKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEY 189
P + +++++ K + ++ E P CG +Q K+ +E Y
Sbjct: 126 P-SAARRLVEYIKK-----------ISIKNLECP------HCGEKQFKIKLE-----KPY 162
Query: 190 KAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL 249
++N +L P E + L +RI D D +LLG +PK +RP+WMIL VL
Sbjct: 163 NFNEERNGSIVKL-SPSEIRDRL---------ERIPDSDVELLGYDPKSSRPEWMILTVL 212
Query: 250 PIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFH 299
P+PP +RPS DDLTH+L IIR NE L+ GAP II + LLQ+H
Sbjct: 213 PVPPITIRPSITIESGIRAEDDLTHKLVDIIRLNERLKESIEAGAPQLIIEDLWDLLQYH 272
Query: 300 IATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTI 359
+ATYFDNE+PG P A RSGRP++++ RLK KEGR RGNL GKRVDFSARTVI+PDP +
Sbjct: 273 VATYFDNEIPGLPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSARTVISPDPNL 332
Query: 360 NIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLR 419
+ID++G+P++IA LT PE VT NIER+++ + GP PG A Y+I+ DG+R+DLR
Sbjct: 333 SIDEVGIPYTIARMLTVPERVTNINIERIRQYIINGPDKWPG---ANYVIKPDGRRIDLR 389
Query: 420 YLK--KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSV 477
Y+K K + GY VERHL DGD VLFNRQPSLH++S+M H+++++P TFRLNL
Sbjct: 390 YVKDRKELASSITAGYVVERHLVDGDVVLFNRQPSLHRISMMAHKVRVLPGRTFRLNLLD 449
Query: 478 TSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKI 537
PYNADFDGDEMN+HVPQS E AE ELM+V K I++P+ P++G QD + G +
Sbjct: 450 CPPYNADFDGDEMNLHVPQSEEAIAEARELMLVHKNIITPRYGGPIIGGGQDYISGAYLL 509
Query: 538 TKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAW 597
+ + T + + IL DF G++ +P IL P+P +TGKQV +L +PK N A
Sbjct: 510 SVKTTLLTVEEVATIL-GVTDFVGELGEPAILAPKPYYTGKQVISLFLPKDFNFHGPANI 568
Query: 598 ----HADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTST-GSLIHVIWEEVGPDAARK 652
A D+ + D+ + I+ G LL G KK +G S++H E G + +
Sbjct: 569 SKGPRACKDE--ICPHDSFIVIKNGLLLEGVFDKKAIGNQQPESMLHWSIREYGTEYGKW 626
Query: 653 FLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEP 712
+ + + +L F++ + D + I I + + V I++ + LEP
Sbjct: 627 LMDNVFKMFIRFLEMRGFTMTLEDITIPDEAQNEITTKIKEGYSQVDEYIRKFNEGQLEP 686
Query: 713 EPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 772
PGRT+ ES E+ + L+ R AG A K L NN+ M G++GS +NI+QMTA
Sbjct: 687 IPGRTIEESLESYILDTLDKLRKVAGEIATKYLDPFNNVYIMAITGARGSELNITQMTAL 746
Query: 773 VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 832
+GQQ+V G+RI G+ +RTL F D PE+RGFV+NS++RGL+P E FFHA GGREGL
Sbjct: 747 LGQQSVRGERIRRGYRERTLSLFKYGDIAPEARGFVKNSFMRGLSPYEMFFHAAGGREGL 806
Query: 833 IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVW 885
+DTAVKTS++GY+QRRL+ A+ D+ ++YDGTVR+ GD++Q +YG+D + ++
Sbjct: 807 VDTAVKTSQSGYMQRRLINALSDLRIEYDGTVRSLYGDIVQVVYGDDAVHPMY 859
>sp|P31813|RPOA1_THECE DNA-directed RNA polymerase subunit A' OS=Thermococcus celer
GN=rpoA1 PE=3 SV=1
Length = 905
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/914 (42%), Positives = 543/914 (59%), Gaps = 74/914 (8%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKCETCTANMAEC 76
+ FGILSP EIR+MS +I +T E G P GGL D RLG ID ++CETC A EC
Sbjct: 11 IDFGILSPQEIRKMSAAEITVPDTYDEDGYPIEGGLMDKRLGVIDPGLRCETCGARAGEC 70
Query: 77 PGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI-LADEDD----HKFKQALKIRNPK 131
PGHFGH+ELA+P+ H+GF KT+ ++ S C C +I L DE+ HKF+ + K
Sbjct: 71 PGHFGHVELARPVIHVGFAKTIHRVLESTCRECGRIKLTDEEIEEYFHKFEVTGNRKKAK 130
Query: 132 NRL-KKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYK 190
+RL K+I K + C CG+ Q + E + E +
Sbjct: 131 DRLIKEIHKKAKERMVCPH---------------------CGSPQFPIKFERPTVYWELR 169
Query: 191 AQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLP 250
+ N E K + V L++I D D L+GL+ + ARP+WM+L VLP
Sbjct: 170 KDEEGN----------EYKHRMMPSEVRDRLEKIPDRDLPLIGLDAEKARPEWMVLTVLP 219
Query: 251 IPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHI 300
+PP +RPS DDLTH+L IIR N L+ GAP II + LLQ+H+
Sbjct: 220 VPPVTMRPSITLESGIRAEDDLTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHV 279
Query: 301 ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTIN 360
TY +NE G P A +SGRP+K++ RLK KEGR RGNL GKRV+FSARTVI+PDP I+
Sbjct: 280 TTYINNETSGIPPAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMIS 339
Query: 361 IDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRY 420
I+++GVP +IA+ LT PE VT +N E+L+++V GP PG A Y+I +G+R+ L
Sbjct: 340 INEVGVPMAIAMELTVPEKVTEFNFEKLRKMVLNGPEKYPG---ANYVIDPEGRRIRLME 396
Query: 421 LK-KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTS 479
++ L++G+ VERHL DGD VLFNRQPSLH+MSIM HR+++MPY TFRLNLSV
Sbjct: 397 NNLETVAEKLDIGWTVERHLLDGDVVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLSVCP 456
Query: 480 PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 539
PYNADFDGDEMN+HVPQ+ E +AE LM V I+SP+ P++ +QD + G +T+
Sbjct: 457 PYNADFDGDEMNLHVPQTEEAQAEAKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTR 516
Query: 540 RDTFIEKDVFMNILMWWEDFDGKVPQP-TILKPRPLWTGKQVFNLIIPKQINLF------ 592
+ E+ +LM+ ++P+P + LW+GK +F+L++PK + ++
Sbjct: 517 EGAYFERTEVEQMLMFAGVDVDRLPEPDKVENGVELWSGKTIFSLLLPKDLTIWYRNKLC 576
Query: 593 ----RTAAWHA--------DNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHV 640
R A D ++ A D I G+LLSG + K G G L+ +
Sbjct: 577 DEPGRCEALEKLIEEKLIPDEEEVRALAYDGFTYILNGKLLSGAIDKTAYGREDGKLLDI 636
Query: 641 IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKN 700
I E G + AR+FL L + + F+ I D + ++ I + I +A+ V
Sbjct: 637 IVREYGVERARQFLDQVTKLAIWVITHKGFTTAIDDEDLPTEALDRIREIIREAEERVNR 696
Query: 701 LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760
LI+ ++ LEP PG+T+ E+ E+K+ L ARD AG A++ L SN+ M G++
Sbjct: 697 LIEAYRNGELEPIPGKTLEETLESKIMAALAEARDNAGKVAERYLGMSNHAVIMAKTGAR 756
Query: 761 GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 820
G +NI+QM A +GQQ++ GKR+ G+ +R L HF D G +RGFV NSY GLTPQE
Sbjct: 757 GKILNITQMAAMLGQQSIRGKRLYRGYRERVLTHFKPGDLGARARGFVINSYKSGLTPQE 816
Query: 821 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 880
+FFHAMGGREGL+DTAV+T+++GY+QRRL+ A++D+ V+YDGTVR+ G ++QF YGEDG
Sbjct: 817 YFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVEYDGTVRDPTGIIVQFRYGEDG 876
Query: 881 MDSV--WIESQTLD 892
+D + W + +T+D
Sbjct: 877 IDPMRSW-KGKTID 889
>sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1
SV=1
Length = 1460
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 498/1475 (33%), Positives = 752/1475 (50%), Gaps = 134/1475 (9%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTERGK---PKPGGLSDPRLGTIDRKMKCETCT 70
+++ ++F LS +I S V++ + + K PK G DP++G ++C TC
Sbjct: 12 RIKGLEFSALSAADIVAQSEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSLECATCH 71
Query: 71 ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE-DDHKFKQALK--- 126
N+A C GHFGHL+LA P+FHIG+ K + I++ +C NCS IL E D +F L+
Sbjct: 72 GNLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKNCSAILLSETDKRQFLHELRRPG 131
Query: 127 IRNPKNR--LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMK 184
+ N + LKKILD CK + +C + +G +KK G G+ K+ + +
Sbjct: 132 VDNLRRMGILKKILDQCKKQRRC-----LHCGALNG--VVKKAAAGAGSAALKIIHDTFR 184
Query: 185 MIAEYKAQRKKNDDQE---------QLPEPVER-KQTLTAERVLGVLKRISDEDCQLLGL 234
+ + A K E +L V+R L + L + K+I DC+LLG+
Sbjct: 185 WVGKKSAPEKDIWVGEWKEVLAHNPELERYVKRCMDDLNPLKTLNLFKQIKSADCELLGI 244
Query: 235 NPKY--ARPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQER 281
+ RP+ I + LP PP +RPS DDLT +L I+ + ++
Sbjct: 245 DATVPSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNEDDLTVKLTEIVWTSSLIKAGLD 304
Query: 282 NGAPAHIISEFAQLLQFHIATYFDNE------LPGQPRATQRSGRPIKSICSRLKAKEGR 335
G + + E LQ +A Y +++ LPG + +PI+ C RLK K+GR
Sbjct: 305 KGISINNMMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKV-KPIRGFCQRLKGKQGR 363
Query: 336 IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 395
RGNL GKRVDFS RTVI+PDP ++ID++ VP +A LTYPE VT YN +L+EL+ G
Sbjct: 364 FRGNLSGKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNG 423
Query: 396 PHPPPGKTGAKYII-RDDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSL 453
P+ PG A Y++ R++ R +LRY + +L++G VERHL DGD VLFNRQPSL
Sbjct: 424 PNVHPG---ANYLLKRNEDARRNLRYGDRMKLAKNLQIGDVVERHLEDGDVVLFNRQPSL 480
Query: 454 HKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKC 513
H++SI+ H KI P+ TFRLN V +PYNADFDGDEMN+HVPQ+ E RAE + LM V
Sbjct: 481 HRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVKNN 540
Query: 514 IVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED----FDGKVPQPTIL 569
+++P+S P++ QD + G I+ +D+F ++ +L D FD +P P I+
Sbjct: 541 LLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHFD--IPPPAIM 598
Query: 570 KPRPLWTGKQVFNLII------PKQINL-FRTAAWHADNDKGI---LTAGDTLVRIEKGE 619
KP LWTGKQVF+L+I P INL + + K + ++ D V I +
Sbjct: 599 KPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFVPPKSKSLPNEMSQNDGFVIIRGSQ 658
Query: 620 LLSGTLCKKTLGTSTG-SLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTI 678
+LSG + K LG S+ + I + GP A + L +L FSIGI D
Sbjct: 659 ILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFSIGINDVT 718
Query: 679 ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAG 738
+ + + A + LI LE +PG ++ E K+ +L+ R+E G
Sbjct: 719 PADDLKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVG 778
Query: 739 SSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKD 798
L N M T GSKGS +N+SQM A VGQQ + G R+P GF DR+LPHF K+
Sbjct: 779 DVCINELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKN 838
Query: 799 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
P+S+GFV NS+ GL+P EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+
Sbjct: 839 SKTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSC 898
Query: 859 KYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFR--FEMDEENWNP 916
+YD TVR S ++QF YG DG+D + +E + +S +D A+ F ++ P
Sbjct: 899 QYDNTVRTSANGIVQFTYGGDGLDPLEMEGNA-QPVNFNRS-WDHAYNITFNNQDKGLLP 956
Query: 917 NYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNA 976
+++ + L ++E +D ++ + A E D+ +L+ I N
Sbjct: 957 YAIMETANEILGPLEERLVRYDNSGCLVKREDLNKA-EYVDQYDAERDFYHSLREYI-NG 1014
Query: 977 QKTFKVDPRRPSDMH-----PMEVVEAVDKLQERLKVVPGEDPLSVE-----AQKNATLF 1026
+ T + R+ M P + ++ +D + VP SV ++K+ F
Sbjct: 1015 KATALANLRKSRGMLGLLEPPAKELQGIDPDE----TVPDNVKTSVSQLYRISEKSVRKF 1070
Query: 1027 FNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPAT 1086
I L ++R R IG I + QS+ PG + G +
Sbjct: 1071 LEI----------ALFKYRKARLEPGTAIGAIGA---QSIGEPGTQMTLKTFHFAGVASM 1117
Query: 1087 QMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQC 1145
+TL GVPR++EIIN +K I TP ++ L VN ER A+ V+
Sbjct: 1118 NVTL---------------GVPRIKEIINASKVISTPIINAVL---VNDNDERAARVVKG 1159
Query: 1146 ALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIEL 1204
+E T L V + Y + + D+ + K E+ EDIA L+I+
Sbjct: 1160 RVEKTLLSDVAFYVQDVYKDNLSFIQVRIDLGTIDKLQLELTIEDIAVAITRASKLKIQA 1219
Query: 1205 NREMMVDK-KLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRI----RIMNDEAPKGEL 1259
+ ++ K ++++ E + ++ + + + + R+ R + D KG L
Sbjct: 1220 SDVNIIGKDRIAINVFPEGYKAK---SISTSAKEPSENDVFYRMQQLRRALPDVVVKG-L 1275
Query: 1260 NDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAV 1319
D S + I + E+ + G L VMC + V RTT+NH++E+ VLGIEA
Sbjct: 1276 PDISRA----VINIRDDGKRELLVEGYGLRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAA 1331
Query: 1320 RRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEE 1379
R +++ E+ +S G V+ RH+ +L D MTY+G ++ ITR G+++ + SFE+
Sbjct: 1332 RYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEK 1391
Query: 1380 TVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
T D L DAA + + D + GV+E I+LGQ IGTG
Sbjct: 1392 TTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTG 1426
>sp|O27125|RPOA1_METTH DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoA1 PE=3 SV=1
Length = 870
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/894 (41%), Positives = 537/894 (60%), Gaps = 76/894 (8%)
Query: 12 VAKVRMVQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKCETCT 70
+ K+ + FG++SP++IR+MSV QI +T E G P GL DPRLG ID ++C TC
Sbjct: 5 LKKISQINFGLMSPEDIRKMSVTQIVTPDTYDEDGYPIENGLMDPRLGVIDPSLRCRTCG 64
Query: 71 ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD-HKFKQALKIRN 129
A ECPGHFG + LA+P+ H+GF T+ I+RS C C ++L E + +++Q
Sbjct: 65 AKGGECPGHFGSINLARPVIHVGFADTIHKILRSTCRKCGRVLLTETEIEEYRQ------ 118
Query: 130 PKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEY 189
+ILDA + ++ LT ++ AE
Sbjct: 119 ------RILDAME-------------------------------KEESLTPIIKEIYAEA 141
Query: 190 KAQRKKNDDQEQ----LPEP---VERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
+ + + ++EQ L +P VE LT V L+RISD+D +LG+NP+ ARP+
Sbjct: 142 RRDKCPHCEEEQEEIKLDKPVSIVEGDYKLTPSEVRERLERISDDDALILGVNPEVARPE 201
Query: 243 WMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
WM+L VLP+PP VRPS DDLTH+L I+R N+ L+ GAP I+ +
Sbjct: 202 WMVLTVLPVPPVTVRPSITLETGERSEDDLTHKLVDILRINQRLKENMEAGAPQLIVEDL 261
Query: 293 AQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 352
+LLQ+H+ TYFDNE G P A RSGRP+K++ RLK KEGR R NL GKRV+FSARTV
Sbjct: 262 WELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTV 321
Query: 353 ITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDD 412
I+PDP I+I+++GVP IA +T P VT +NI+R++E +E GP P GA Y+IR D
Sbjct: 322 ISPDPNISINEVGVPEIIAREVTVPVYVTEWNIDRMREYIENGPDVHP---GANYVIRPD 378
Query: 413 GQRLDL-RYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
G+++ + K+ +L+ GY VERHL DGD VLFNRQPSLH+MS+M H+++++PY TF
Sbjct: 379 GRKIRIYNETKEVVLENLKPGYIVERHLKDGDIVLFNRQPSLHRMSMMAHQVRVLPYKTF 438
Query: 472 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
RLNL V PYNADFDGDEMNMHV Q+ E+RAE LM V + I+SP+ P++G + D +
Sbjct: 439 RLNLCVCPPYNADFDGDEMNMHVFQTEESRAEAKTLMRVQEHILSPRFGGPIIGGIHDHI 498
Query: 532 LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
G +T++ ++ IL +P P + R WTGK++F++++P +N+
Sbjct: 499 SGAYLLTRKSAVFSEEKVFQILK-----KAGLPLPD-SRGRD-WTGKEIFSMVLPDDLNM 551
Query: 592 FRTA--AWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
A + + D V IE G+L+SG + +K G G ++ I +E G DA
Sbjct: 552 VYRAEVCRKCEECLEMECENDAYVVIENGQLISGVIDEKAYGAFAGKILDHIVKEYGTDA 611
Query: 650 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
AR+FL L ++ F+ D + E I + A+ V LI+ ++
Sbjct: 612 AREFLDSATKLAIAGIMHAGFTTSTNDEEIPEEARERIEAHLRNAEARVDQLIEAYENGE 671
Query: 710 LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLS-ESNNLKAMVTAGSKGSFINISQ 768
LEP PGR++ E+ E K+ QVL ARD++G A+ + N+ M G++GS +N++Q
Sbjct: 672 LEPLPGRSLEETLEMKIMQVLGEARDKSGEIAESYFDMDENHAVIMALTGARGSMLNLTQ 731
Query: 769 MTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGG 828
+TACVGQQ+V G RI G+ +RTLPHF K + G +SRGFV +SY GL P EFFFHAMGG
Sbjct: 732 ITACVGQQSVRGGRISRGYDNRTLPHFKKGELGAKSRGFVHSSYKEGLDPIEFFFHAMGG 791
Query: 829 REGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
REGL+DTA++T+++GY+QRRLV A++D+ V +G V ++ G +IQ +GEDG+D
Sbjct: 792 REGLVDTAIRTAQSGYMQRRLVNALQDLTVDENGRVVDNRGVIIQNRFGEDGVD 845
>sp|Q980R2|RPOA1_SULSO DNA-directed RNA polymerase subunit A' OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoA1
PE=1 SV=1
Length = 880
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/889 (42%), Positives = 525/889 (59%), Gaps = 61/889 (6%)
Query: 15 VRMVQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKCETCTANM 73
++ ++FGILSPDEIR+MSV I + E G P G + DPRLG I+ KC TC +
Sbjct: 6 IKGIKFGILSPDEIRKMSVTAIITPDVYDEDGTPIEGSVMDPRLGVIEPGQKCPTCGNTL 65
Query: 74 AECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD----HKFKQALKIRN 129
CPGHFGH+EL +P+ H+G +K + +++ C C ++ ED+ + A+K R
Sbjct: 66 GNCPGHFGHIELVRPVIHVGLVKHIYEFLKATCRRCGRVKISEDEIEKYSRIYNAIKKRW 125
Query: 130 PK--NRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIA 187
P RL + + K + P C +Q K+ +E
Sbjct: 126 PSAARRLTEYVKKTAMKAQV-------CPH-------------CNEKQYKIKLE------ 159
Query: 188 EYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQ 247
K + E+ E V + LT + L++I D D ++LG +P +RP+WMIL
Sbjct: 160 ------KPYNFYEERKEGVAK---LTPSDIRERLEKIPDSDVEILGYDPTTSRPEWMILT 210
Query: 248 VLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQ 297
VLP+PP +RPS DDLTH+L I+R NE L+ GAP II + LLQ
Sbjct: 211 VLPVPPITIRPSIMIESGIRAEDDLTHKLVDIVRINERLKESIDAGAPQLIIEDLWDLLQ 270
Query: 298 FHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDP 357
+H+ATYFDNE+PG P + RSGRP++++ RLK KEGR RGNL GKRVDFS+RTVI+PDP
Sbjct: 271 YHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDP 330
Query: 358 TINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLD 417
I+ID++GVP IA LT PE +TP+NIE+L++ V GP PG A Y+IR DG+R+D
Sbjct: 331 NISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPG---ANYVIRPDGRRID 387
Query: 418 LRYLK--KSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
LRY+K K L GY +ERHL DGD VLFNRQPSLH++S+M HR++++ TFRLNL
Sbjct: 388 LRYVKDRKELASTLAPGYIIERHLIDGDIVLFNRQPSLHRISMMAHRVRVLKGLTFRLNL 447
Query: 476 SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
V PYNADFDGDEMN+HVPQS E AE E+M+V K I++P+ P++G QD + G
Sbjct: 448 LVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQDYISGAY 507
Query: 536 KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
+T + T + K+ IL D + +P IL PR +TGKQV + +PK N A
Sbjct: 508 LLTVKTTLLTKEEAQQIL-GVADVKIDLGEPAILAPREYYTGKQVISAFLPKDFNFHGQA 566
Query: 596 AWHADND--KGILTAGDTLVRIEKGELLSGTLCKKTLGTST-GSLIHVIWEEVGPDAARK 652
+ K D+ V I+ G LL G KK +G S++H + +E + +
Sbjct: 567 NVSSGPRLCKNEDCPHDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKW 626
Query: 653 FLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEP 712
+ + + ++ F++ + D + I + I +AK V NLI++ ++ LEP
Sbjct: 627 LMDNLFRVFIRFVELQGFTMRLEDVSLGDDVKKEIYNEIDRAKVEVDNLIQKYKNGELEP 686
Query: 713 EPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 772
PGRT+ ES EN + L+ R AG A K L N M G++GS +NI+QM A
Sbjct: 687 IPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNITQMAAM 746
Query: 773 VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 832
+GQQ+V G+RI G++ RTLPHF D PE+RGF+ +S+ GL P E FFHA GGREGL
Sbjct: 747 LGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKPTELFFHAAGGREGL 806
Query: 833 IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGM 881
+DTAV+TS++GY+QRRL+ A+ D+ +YDGTVR+ G+V+Q YG+DG+
Sbjct: 807 VDTAVRTSQSGYMQRRLINALSDLRAEYDGTVRSLYGEVVQVAYGDDGV 855
>sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoA1 PE=3 SV=1
Length = 889
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/893 (41%), Positives = 532/893 (59%), Gaps = 69/893 (7%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKCETCTANMAEC 76
+ FG+LSP++IR MSV +I +T + G P GGL D RLG ID + C++C+ + C
Sbjct: 13 ITFGLLSPEQIRTMSVAKIVTADTYDDDGYPIDGGLMDTRLGVIDPGLVCKSCSGRVGTC 72
Query: 77 PGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE--DDHKFKQALKIRNPKNRL 134
PGHFGH+EL+K + HIGF K + ++++VC +C K+ E D ++ LK+
Sbjct: 73 PGHFGHIELSKSVIHIGFAKDIYKLLKAVCPHCGKVTVTEIKRDEYLEKMLKLEE----- 127
Query: 135 KKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKG-GCGAQQPKLTIEGMKMIAEYKAQR 193
+GGD + +E K + CG +Y +
Sbjct: 128 -------------DGGDPWTLSDDLLKEAAKSSVCPSCGE-------------VKYDIKY 161
Query: 194 KKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPP 253
K QL +++ LT+ V +L++I +EDC+LLG+N + ARP++M+L VLP+PP
Sbjct: 162 DKPTTYHQLDGKSQKQ--LTSSEVREILEKIPNEDCKLLGINSRVARPEYMVLTVLPVPP 219
Query: 254 PPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATY 303
VRPS DDLTH+L IIR N+ L GAP II + LLQ+HI TY
Sbjct: 220 VTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTY 279
Query: 304 FDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQ 363
FDNE PG P A RSGRP++++ RLK KEGR R NL GKRV+FSARTVI+PDP ++I++
Sbjct: 280 FDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINE 339
Query: 364 LGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD----DGQRLDLR 419
+G+P IA LT PE VTPYNIER+++L+E G PG Y+I+ DG+ +
Sbjct: 340 VGIPELIAKELTVPEKVTPYNIERIRKLIENGSDKHPG---VNYVIKKVKTKDGKEEE-- 394
Query: 420 YLKKSSDHHLEL-------GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFR 472
Y K +D + ++ G VERHL DGD VL+NRQPSLH+MSIM H++K++PY TFR
Sbjct: 395 YKIKITDTNKKMWVENIVDGMVVERHLGDGDVVLYNRQPSLHRMSIMAHKVKVLPYRTFR 454
Query: 473 LNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLL 532
NL V PYNADFDGDEMN+HVPQS E RAE LM+V K I+SP+ P++G + D +
Sbjct: 455 HNLCVCPPYNADFDGDEMNVHVPQSEEARAEAETLMLVEKHIISPRYGGPIIGAIHDFVS 514
Query: 533 GCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPR-PLWTGKQVFNLIIPKQINL 591
G +T + FI+ + L+ F ++ +P ++ ++GK +F+ +PK +NL
Sbjct: 515 GAYVLTSSN-FIKDEALT--LLKSSGFGSELGEPDFVENGIEYYSGKSLFSKTLPKGLNL 571
Query: 592 FRTA--AWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
A K D V I G L+ G + K G TG +++ I ++ G +
Sbjct: 572 QYKAKVCKKCVQCKREECENDAFVIIRNGRLVQGVIDKNGFGAETGVVLNTIVKDFGSED 631
Query: 650 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
AR FL + ++ F+ GI D ++ ++ I D + KA+++V+ ++++ + +
Sbjct: 632 ARTFLDSATKMSVKSMMLRGFTTGIDDEDIPSEAIQEIQDLLDKAESDVQEIVERYEGGT 691
Query: 710 LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
L+P PGR + ES E + Q+L ARD+ G A+K LS+ N+ M G++GS +NI+ M
Sbjct: 692 LDPLPGRGIEESREAYIMQILGKARDDTGKVAEKYLSKENHAALMARTGARGSLLNITMM 751
Query: 770 TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
A VGQQ+V G R+ G+ RTLPHF + +S GFV + Y +GL P E+FFHAMGGR
Sbjct: 752 AASVGQQSVRGGRVFRGYRGRTLPHFGEGSLDAKSHGFVRSCYKKGLAPTEYFFHAMGGR 811
Query: 830 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
EGL+D AV+T+++GY+QRRLV A++DI +YDGTVR+S G ++QF YGED +D
Sbjct: 812 EGLVDQAVRTAQSGYMQRRLVNALQDIKAEYDGTVRDSRGIIVQFNYGEDLVD 864
>sp|P0CX02|RPOA1_HALSA DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoA1 PE=3
SV=1
Length = 971
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/971 (38%), Positives = 541/971 (55%), Gaps = 90/971 (9%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKC 66
+P E+ ++ FG++ P+E R MS ++ +T + G P GL DPRLG ID ++C
Sbjct: 6 APKEIGEI---SFGLMDPEEYRDMSATKVITADTYDDDGFPIDMGLMDPRLGVIDPGLEC 62
Query: 67 ETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNC-SKILADEDDHKFKQAL 125
+TC C GHFGH+ELA P+ H+GF K + ++R C C S +L +E+ ++++ L
Sbjct: 63 KTCGQRSGGCNGHFGHIELAAPVIHVGFSKLIRRLLRGTCRECASLLLTEEEKDEYRENL 122
Query: 126 -KIRNPKNRLKKILDAC----KNKTKCEGGDEID----------------VPGQDGEEPL 164
+ R+ + + ++ A + K C E+ V D E +
Sbjct: 123 DRTRSLRQDVSDVMTAAIREARKKDHCPHCGEVQYDVKHEKPTTYYEVQQVLASDYSERI 182
Query: 165 --------KKNKGGCG----AQQPKLTIEGMKMI--AEYKAQRKKNDDQEQLPEPV---- 206
++ G A+Q + I + I E++ +R+ D+E + +
Sbjct: 183 AASMQPDEDEDDAGVSPQELAEQTDIDISRINEILSGEFRPRRE---DREAIETAIGADL 239
Query: 207 --ERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----- 259
E L + + I ED + LG+N +RP+WMIL VLP+PP RPS
Sbjct: 240 TTEDMNKLMPSDIRDWFEDIPGEDLEALGVNSDRSRPEWMILTVLPVPPVTARPSITLDN 299
Query: 260 -----DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRA 314
DDLTH+L IIR N+ GAP II + +LLQ+H+ T+ DNE+ G P A
Sbjct: 300 GQRSEDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPA 359
Query: 315 TQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNL 374
RSGRP+K++ RLK KEGR RG+L GKRV+FSARTVI+PDPT++++++GVP +A +
Sbjct: 360 RHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVATEM 419
Query: 375 TYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH---HLEL 431
T V N+ER + V GP PG A Y+ R DG+R+ R +K + +E
Sbjct: 420 TQTMVVNEQNLERARRYVRNGPEGHPG---ANYVTRPDGRRV--RVTEKVCEELAERVEP 474
Query: 432 GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 491
G++V+RHL DGD ++FNRQPSLH+MSIM H + +MPY TFRLN V PYNADFDGDEMN
Sbjct: 475 GWEVQRHLIDGDIIIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMN 534
Query: 492 MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 551
MH Q+ E RAE LM V + I+SP+ ++G +QD + G +T + + +
Sbjct: 535 MHALQNEEARAEARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTNDNPRFNETQASD 594
Query: 552 ILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDT 611
+L + T WTG Q+F+ ++P ++L T T GDT
Sbjct: 595 LLRQTRIDELPAAAGTDEDGDQYWTGHQIFSELLPDDLSLEFTG-----------TTGDT 643
Query: 612 LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
+V IE G+LL GT+ +G ++ I + G AR F+ L ++ FS
Sbjct: 644 VV-IEDGQLLEGTIADDEVGEYGSEIVDTITKVHGNTRARIFINEVASLAMRSIMHFGFS 702
Query: 672 IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
IGI D + E I++ I A + V+ LI+ ++ LE PGRT+ E+ E K+ Q L
Sbjct: 703 IGIDDETVSTEARERIDEAIQSAYDRVQELIETYENGDLESLPGRTVDETLEMKIMQTLG 762
Query: 732 TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
ARD AG A+++ E N M +G++GS +N++QM CVGQQ V G+RI G+ DRT
Sbjct: 763 KARDSAGDVAEENFDEDNPAVVMANSGARGSMLNLTQMAGCVGQQAVRGERINRGYEDRT 822
Query: 792 LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
L HF +D E+ GFVENSY GLTP+EFFFHAMGGREGL+DTAV+TS++GY+QRRL+
Sbjct: 823 LSHFAPNDLSSEAHGFVENSYTSGLTPKEFFFHAMGGREGLVDTAVRTSKSGYLQRRLIN 882
Query: 852 AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES-QTLD------SLKMKKSEFD-- 902
A+ ++ +YDGTVR++ ++QF +GEDG V + S + +D + ++ SEFD
Sbjct: 883 ALSELETQYDGTVRDTSDTIVQFEFGEDGTSPVQVSSNEEVDIDVEHVADRILNSEFDSD 942
Query: 903 --KAFRFEMDE 911
KA E++E
Sbjct: 943 TQKAEFLEVEE 953
>sp|B0R8D4|RPOA1_HALS3 DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoA1 PE=1 SV=1
Length = 971
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/971 (38%), Positives = 541/971 (55%), Gaps = 90/971 (9%)
Query: 8 SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKC 66
+P E+ ++ FG++ P+E R MS ++ +T + G P GL DPRLG ID ++C
Sbjct: 6 APKEIGEI---SFGLMDPEEYRDMSATKVITADTYDDDGFPIDMGLMDPRLGVIDPGLEC 62
Query: 67 ETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNC-SKILADEDDHKFKQAL 125
+TC C GHFGH+ELA P+ H+GF K + ++R C C S +L +E+ ++++ L
Sbjct: 63 KTCGQRSGGCNGHFGHIELAAPVIHVGFSKLIRRLLRGTCRECASLLLTEEEKDEYRENL 122
Query: 126 -KIRNPKNRLKKILDAC----KNKTKCEGGDEID----------------VPGQDGEEPL 164
+ R+ + + ++ A + K C E+ V D E +
Sbjct: 123 DRTRSLRQDVSDVMTAAIREARKKDHCPHCGEVQYDVKHEKPTTYYEVQQVLASDYSERI 182
Query: 165 --------KKNKGGCG----AQQPKLTIEGMKMI--AEYKAQRKKNDDQEQLPEPV---- 206
++ G A+Q + I + I E++ +R+ D+E + +
Sbjct: 183 AASMQPDEDEDDAGVSPQELAEQTDIDISRINEILSGEFRPRRE---DREAIETAIGADL 239
Query: 207 --ERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS----- 259
E L + + I ED + LG+N +RP+WMIL VLP+PP RPS
Sbjct: 240 TTEDMNKLMPSDIRDWFEDIPGEDLEALGVNSDRSRPEWMILTVLPVPPVTARPSITLDN 299
Query: 260 -----DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRA 314
DDLTH+L IIR N+ GAP II + +LLQ+H+ T+ DNE+ G P A
Sbjct: 300 GQRSEDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFMDNEISGTPPA 359
Query: 315 TQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNL 374
RSGRP+K++ RLK KEGR RG+L GKRV+FSARTVI+PDPT++++++GVP +A +
Sbjct: 360 RHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVATEM 419
Query: 375 TYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDH---HLEL 431
T V N+ER + V GP PG A Y+ R DG+R+ R +K + +E
Sbjct: 420 TQTMVVNEQNLERARRYVRNGPEGHPG---ANYVTRPDGRRV--RVTEKVCEELAERVEP 474
Query: 432 GYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 491
G++V+RHL DGD ++FNRQPSLH+MSIM H + +MPY TFRLN V PYNADFDGDEMN
Sbjct: 475 GWEVQRHLIDGDIIIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMN 534
Query: 492 MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN 551
MH Q+ E RAE LM V + I+SP+ ++G +QD + G +T + + +
Sbjct: 535 MHALQNEEARAEARVLMRVQEQILSPRFGENIIGAIQDHISGTYLLTNDNPRFNETQASD 594
Query: 552 ILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDT 611
+L + T WTG Q+F+ ++P ++L T T GDT
Sbjct: 595 LLRQTRIDELPAAAGTDEDGDQYWTGHQIFSELLPDDLSLEFTG-----------TTGDT 643
Query: 612 LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
+V IE G+LL GT+ +G ++ I + G AR F+ L ++ FS
Sbjct: 644 VV-IEDGQLLEGTIADDEVGEYGSEIVDTITKVHGNTRARIFINEVASLAMRSIMHFGFS 702
Query: 672 IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
IGI D + E I++ I A + V+ LI+ ++ LE PGRT+ E+ E K+ Q L
Sbjct: 703 IGIDDETVSTEARERIDEAIQSAYDRVQELIETYENGDLESLPGRTVDETLEMKIMQTLG 762
Query: 732 TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
ARD AG A+++ E N M +G++GS +N++QM CVGQQ V G+RI G+ DRT
Sbjct: 763 KARDSAGDVAEENFDEDNPAVVMANSGARGSMLNLTQMAGCVGQQAVRGERINRGYEDRT 822
Query: 792 LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
L HF +D E+ GFVENSY GLTP+EFFFHAMGGREGL+DTAV+TS++GY+QRRL+
Sbjct: 823 LSHFAPNDLSSEAHGFVENSYTSGLTPKEFFFHAMGGREGLVDTAVRTSKSGYLQRRLIN 882
Query: 852 AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIES-QTLD------SLKMKKSEFD-- 902
A+ ++ +YDGTVR++ ++QF +GEDG V + S + +D + ++ SEFD
Sbjct: 883 ALSELETQYDGTVRDTSDTIVQFEFGEDGTSPVQVSSNEEVDIDVEHVADRILNSEFDSD 942
Query: 903 --KAFRFEMDE 911
KA E++E
Sbjct: 943 TQKAEFLEVEE 953
>sp|P09846|RPOA1_METTW DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoA1 PE=3 SV=2
Length = 865
Score = 629 bits (1621), Expect = e-178, Method: Compositional matrix adjust.
Identities = 357/896 (39%), Positives = 523/896 (58%), Gaps = 85/896 (9%)
Query: 12 VAKVRMVQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKCETCT 70
+ K+ + FG++SP++IR+MSV QI +T E G P L DPRLG I ++C +C
Sbjct: 5 LKKISQINFGLMSPEDIRKMSVAQIVTPDTYDEDGYPIENELMDPRLGVIGSSLRCRSCG 64
Query: 71 ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP 130
A ECPGHFG + LA+P+ H+GF T+ I+ S+C CS+IL E + I++
Sbjct: 65 AKGGECPGHFGSINLARPVIHVGFADTIHKILSSICRKCSRILLTETE--------IQDY 116
Query: 131 KNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYK 190
+ R+ + ++ ++ T P+ K ++ AE +
Sbjct: 117 RQRILEAMEREESLT-----------------PIIK-----------------EIYAEAR 142
Query: 191 AQRKKNDDQEQ----LPEP---VERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
R + ++EQ L +P VE LT V L+RI+D D LLG+NP+ ARP+W
Sbjct: 143 RDRCPHCEEEQEEIKLDKPVSIVEGDYKLTPSEVRERLERITDNDSLLLGVNPEVARPEW 202
Query: 244 MILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
M+L VLP+PP VRPS DDLTH+L I+R N+ L+ GAP I+ +
Sbjct: 203 MVLTVLPVPPVTVRPSITLETGERSEDDLTHKLVDILRINQRLKENMEAGAPQLIVEDLW 262
Query: 294 QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
+LLQ+H+ TYFDNE G P A RSGRP+K++ RLK KEGR R NL GKRV+FSARTV+
Sbjct: 263 ELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNFSARTVV 322
Query: 354 TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDG 413
+PDP ++++++GVP IA +T P VT +NI+R+KE +E GP P GA Y+IR DG
Sbjct: 323 SPDPNVSVNEVGVPELIAKEVTVPVYVTEWNIDRMKEHIENGPDVHP---GANYVIRPDG 379
Query: 414 QRLDLRYLKKSSD---HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
++ +R ++ D +L+ GY VERHL DGD VLFNRQPSLH+MS+M H ++++PY T
Sbjct: 380 RK--IRAYNETKDVVLENLKPGYIVERHLKDGDIVLFNRQPSLHRMSMMAHEVRVLPYKT 437
Query: 471 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
FRLNL V PYNADFDGDEMNMHV Q+ E+RAE LM V I+SP+ G+
Sbjct: 438 FRLNLCVCPPYNADFDGDEMNMHVFQTEESRAEAKTLMRVQDHILSPRFRDLSSGVYT-- 495
Query: 531 LLGCRKITKRDTFIEKDVFMNILMWWED-FDGKVPQPTILKPRPLWTGKQVFNLIIPKQI 589
I++ T + ++ D +G+ P P + WT K++F++++P +
Sbjct: 496 -----TISQEHTSSQGKRLFSVRSRPPDPQEGRAPPPD--REGREWTVKEIFSMVLPDDL 548
Query: 590 NLFRTAAWHADNDKGILT--AGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGP 647
N+ A D+ + D V IE G+L++G + +K G G ++ I +E G
Sbjct: 549 NMVYLAEICRKCDECLEMDWENDAYVVIENGQLITGVIDEKAYGAFAGKILDQIVKEYGS 608
Query: 648 DAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD 707
DAA++FL L ++ F+ D + E I + A+ V LI+ ++
Sbjct: 609 DAAKEFLDSATKLAIAGIMHAGFTTSTNDEEIPEEAKERIEAHLRNAEARVDQLIEAYEN 668
Query: 708 KSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLS-ESNNLKAMVTAGSKGSFINI 766
LEP PGR++ E+ E K+ QVL A+D++G A+ + N+ M G++G+ +N+
Sbjct: 669 GELEPLPGRSLEETLEMKIMQVLGEAKDKSGEIAESYFDMDENHAVIMALTGARGAMLNL 728
Query: 767 SQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAM 826
+Q+TACVGQQ+V G RI G+ +RTLPHF K + G +SRGFV +SY EF M
Sbjct: 729 TQITACVGQQSVHGGRITRGYDNRTLPHFKKGELGAKSRGFVHSSYKEDSILLEF----M 784
Query: 827 GGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
GGREGL+DTA++T+++GY+QRRLV A++D+ V +G V ++ G +IQ +GEDG+D
Sbjct: 785 GGREGLVDTAIRTAQSGYMQRRLVNALQDLTVDENGRVVDNRGVIIQTRFGEDGVD 840
>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1
Length = 1405
Score = 618 bits (1593), Expect = e-175, Method: Compositional matrix adjust.
Identities = 356/923 (38%), Positives = 532/923 (57%), Gaps = 76/923 (8%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGE---TTERGKPKPGGLSDPRLGTIDRKMKCETCT 70
+++ +QFGI P+E + V++ + T+R + G L D +GT ++++ C TC
Sbjct: 12 RIKHLQFGINGPEEFVKDGTVEVSRRDLYTMTDRSPAEHGAL-DLHMGTSNKQINCATCG 70
Query: 71 ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKIL-ADEDDHKFKQALK--- 126
+MA+C GHFG+++LA P+FHIG+ K L+I++++C +CS +L +D++ +F + L+
Sbjct: 71 ESMADCMGHFGYVKLALPVFHIGYFKATLTILQNICKDCSSVLLSDQEKRQFLKDLRRPG 130
Query: 127 IRNPKNR--LKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEG-M 183
I N + K+I D CK +C C A Q + G +
Sbjct: 131 IDNLRRSQICKRINDHCKKMRRC---------------------SKCDAMQGVVKKAGPL 169
Query: 184 KMIAE-YKAQRKKNDDQEQLPEPV--------ERKQTLTAE-------RVLGVLKRISDE 227
K+I E ++ RK DD+E E K L+ +VL + K+I+
Sbjct: 170 KIIHERFRYVRKSQDDEENFRHSFDEALKTIPELKMHLSKAHDDLNPLKVLNLFKQITPV 229
Query: 228 DCQLLGLNPKYARPDWMILQVLPIPPPPVRPS---------DDLTHQLAMIIRHNENLRR 278
DC+LLG++P++ RP+ ++ + +P PP +RPS DDLT ++ II + +R
Sbjct: 230 DCELLGMDPEHGRPENLLWRYVPAPPVCIRPSVAQEGATTEDDLTVKITEIIWTSSLIRA 289
Query: 279 QERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRG 338
G P + E + +Q IA Y ++E+PG R + +PI+ C RLK K+GR RG
Sbjct: 290 ALSKGTPISNLMEQWEFMQLSIAMYINSEMPGL-RPSDMPSKPIRGFCQRLKGKQGRFRG 348
Query: 339 NLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHP 398
NL GKRVDFS RTVI+PDP + IDQ+ VP+ IA LT+PE VT N + L++ + GP
Sbjct: 349 NLSGKRVDFSGRTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDV 408
Query: 399 PPGKTGAKYII-RDDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKM 456
PG A Y+I R+ G + LR+ ++ L++G VERHL+D D VLFNRQPSLHK+
Sbjct: 409 HPG---ANYVIDRESGFKRFLRFGNRNRIADDLKIGDIVERHLHDNDVVLFNRQPSLHKL 465
Query: 457 SIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVS 516
SIM H +K+ P+ T R N V PYNADFDGDEMN+HVPQ+ E + E LELM + +VS
Sbjct: 466 SIMAHLVKVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEAKTEALELMGIKNNLVS 525
Query: 517 PQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV--PQPTILKPRPL 574
P++ P++ QD + ++ +DTF+++ NI + D + P P I+KPR L
Sbjct: 526 PRNGEPIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMMDASTHIDLPPPAIIKPRCL 585
Query: 575 WTGKQVFNLII-PKQ-----INL-FRTAAWHADNDKG-ILTAGDTLVRIEKGELLSGTLC 626
WTGKQVF +++ P + +NL +T ++ K + D + I E+++G +
Sbjct: 586 WTGKQVFTVLMKPNRFSKVLVNLDAKTRSFSRIKSKTPEMCPKDGYLMIRNSEIIAGVVD 645
Query: 627 KKTLGTST-GSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTME 685
K +G SL +VI + G A + + + +L FSIGI D + K++
Sbjct: 646 KSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFLGNRGFSIGIED-VQPGKSLS 704
Query: 686 TINDT-ISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKS 744
+ + ++KA + I Q LE +PG + E K++ L+ RD+ G
Sbjct: 705 SQKEILVNKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKVRDDVGEICMDE 764
Query: 745 LSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPES 804
L +N+ M T GSKGS IN+SQM ACVGQQ + GKR+P GF DR+LPHF K+ P +
Sbjct: 765 LGPANSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHFHKNSKHPLA 824
Query: 805 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTV 864
+GFV NS+ GLTP EF FHA+ GREGL+DTAVKT+ETGY+ RRL+K++ED+ YDGTV
Sbjct: 825 KGFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYDGTV 884
Query: 865 RNSLGDVIQFLYGEDGMDSVWIE 887
R+S DV+QF+YG+DG+D ++E
Sbjct: 885 RSSNSDVVQFVYGDDGLDPTYME 907
Score = 174 bits (440), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 124/378 (32%), Positives = 203/378 (53%), Gaps = 34/378 (8%)
Query: 1045 RLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVT 1104
R+T + + +++++ V PG +G + AQSIGEP TQMTL TFH+AGV+A+ T
Sbjct: 1019 RVTEKQLRSFVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAAQT-T 1077
Query: 1105 LGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKER-AKNVQCALEYTTLRSVTEATEVWY 1163
LGVPR++EIIN AK I TP ++ L +N ER A+ V+ +E T L+ VT E Y
Sbjct: 1078 LGVPRIKEIINAAKTISTPIITGQL---INDRDERSARVVKGRIEKTYLKDVTSYIEEVY 1134
Query: 1164 DPDPMGTIIEEDVEFV-KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEK 1222
P I+ + + + K ++ DIA + L+I ++++ V+ L V
Sbjct: 1135 GPVTTYLSIQVNFDTISKLQLDITLADIAAAIWNTPKLKIP-SQQVTVNNTLQQIHVHTS 1193
Query: 1223 INQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKG-------ELNDESAEDDVFLKKIES 1275
+ + + T ++ +L R++ D G +N ES + ++F++
Sbjct: 1194 SDGKSSE--TEVYY-----RLQTYKRVLPDVVVAGIPTINRSVINQESGKIELFME---- 1242
Query: 1276 NMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
G L AVM E + +T++NH++E+ +VLGIEA R +++ E+ ++ G
Sbjct: 1243 ---------GTGLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHG 1293
Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
V+ RH+ +L D MT +G ++ ITR G+ + + SFE+T D L +AA D
Sbjct: 1294 LTVDPRHIMLLGDVMTCKGEVLGITRFGVAKMKDSVLALASFEKTTDHLFNAAARFAKDS 1353
Query: 1396 LRGVTENIMLGQLAPIGT 1413
+ G++E I+LG+LAPIGT
Sbjct: 1354 IEGISECIVLGKLAPIGT 1371
>sp|Q03585|RPOA1_THEAC DNA-directed RNA polymerase subunit A' OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoA1 PE=3 SV=1
Length = 885
Score = 616 bits (1588), Expect = e-175, Method: Compositional matrix adjust.
Identities = 333/898 (37%), Positives = 517/898 (57%), Gaps = 70/898 (7%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
++ ++F +LSPDEIR++S V++ +T + G P GL D +G I+ ++C TC
Sbjct: 7 RISSIKFALLSPDEIRKLSQVKVITADTYDDDGYPIEHGLMDLHMGVIEPGLRCATCGGK 66
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI-LADEDDHKF-----KQALK 126
+ ECPGHFGH+ELA P+ H+GF+K + + + C +C +I L D++ + K +
Sbjct: 67 VDECPGHFGHIELAMPVVHVGFVKEIKMFLDATCRSCGRIKLTDDEIRTYLPEIQKMDFE 126
Query: 127 IRNPKN---RLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGM 183
+P++ KK +D + C CGAQQ K+ ++
Sbjct: 127 TGDPEDIEILTKKYVDLASQRMVCPH---------------------CGAQQSKIILDKP 165
Query: 184 KMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDW 243
E K +T + + L+RI D+D G NPK ARP+W
Sbjct: 166 TTFREEGTNVK-----------------ITPKEIRERLERIPDDDLIFFGFNPKTARPEW 208
Query: 244 MILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFA 293
M+L VLP+PP VRPS DDLTH+L IIR ++ LR NG+P II +
Sbjct: 209 MVLTVLPVPPINVRPSITLETGERSEDDLTHKLVDIIRISQRLRESRDNGSPQLIIEDLW 268
Query: 294 QLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 353
LLQFH+ TYFDN+ PG P A RSGR +K++ RLK KEGR R NL GKRV FS+RTVI
Sbjct: 269 DLLQFHVTTYFDNQTPGIPPARHRSGRALKTLVQRLKGKEGRFRSNLSGKRVSFSSRTVI 328
Query: 354 TPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPP--GK--TGAKYII 409
+P+P ++++++GVP A LT P V +NI+ ++EL++ G +P G+ TG Y+I
Sbjct: 329 SPEPYLSVNEVGVPERAARELTVPVIVNQFNIDEMRELIKRGRNPRDQFGRYVTGVNYVI 388
Query: 410 RDDGQRLDLRYLKKSSD-HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY 468
R DG+R+ + + + +++G+ VER L +GD VLFNRQPSLH+MS+MGH ++I+P
Sbjct: 389 RPDGRRIKITDQNAAENADRIDIGWTVERQLMEGDIVLFNRQPSLHRMSMMGHTVRILPG 448
Query: 469 STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQ 528
TFR NL+V +PYNADFDGDEMN+HV Q E RAE +M V + I+SP+ P++G +
Sbjct: 449 QTFRFNLAVCTPYNADFDGDEMNLHVIQKEEARAEARIIMKVQEQIMSPRFGGPIIGGIH 508
Query: 529 DTLLGCRKITKRDTFIEKDVFMNILMWWE-DFDGKVPQPTILKPRPLWTGKQVFNLIIPK 587
D + +T + + ++I+ + E D +P+ I + G+ +F+ I+PK
Sbjct: 509 DHVTALFLLTHNNPRYTHEEMVHIMAYLEPDL---LPEARIENGEKYYYGRDIFSTILPK 565
Query: 588 QINL-FRTAAWHADNDKGILTA--GDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEE 644
+N+ FR+ +++ DT V I G+++ GT+ + + +G++I I+ +
Sbjct: 566 GLNVRFRSKLCSGSSERCEFEDDPSDTYVEIVDGKMIHGTIDEAAVSPFSGAIIDKIFRK 625
Query: 645 VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
G A +F+ L ++ FS GI D + I + +++A++ + LI+
Sbjct: 626 FGSQEAARFIDRMTRLAVGFITYRGFSTGISDYDIPESAVARIEELVAQAEDRINKLIET 685
Query: 705 AQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFI 764
+ L+P PGR++ ++ E ++ RDE+G A L M +G++ + +
Sbjct: 686 FRRGELQPAPGRSVEDTLEMEILSEAGVVRDESGKIASSYLGLKVPSVIMARSGARATML 745
Query: 765 NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
NIS++ VGQQ+V G R+ G+ +RTLPHF + D G ++RGFV +SY+ GL+P E+FFH
Sbjct: 746 NISEVAGIVGQQSVRGGRLNRGYYNRTLPHFKRGDIGADARGFVRSSYMTGLSPTEYFFH 805
Query: 825 AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
++GGREGL+DTAV+TS +GY+QRRL+ A ED+ V V++++G +IQ YGEDG+D
Sbjct: 806 SIGGREGLVDTAVRTSRSGYMQRRLINAFEDLKVDDSREVKDTVGSLIQIRYGEDGID 863
>sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium
discoideum GN=polr3a PE=3 SV=1
Length = 1450
Score = 615 bits (1586), Expect = e-174, Method: Compositional matrix adjust.
Identities = 352/909 (38%), Positives = 520/909 (57%), Gaps = 51/909 (5%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKMKCETCTA 71
K+ +QFG+LS D+I ++S VQI + E + + KP P G+ D +LGT D++ C TC
Sbjct: 13 KIGHIQFGLLSEDDIVRLSHVQIVNRELFDLVKRKPTPYGVLDNKLGTSDKQAMCTTCGL 72
Query: 72 NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPK 131
++ +C GHFG+++L P+FHIG++K +++I++ +C +CS IL +E+ ++ K+RN K
Sbjct: 73 SIVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKSCSTILLNEEKKQY-YLRKMRNKK 131
Query: 132 -------NRLKKILDACKNKTKC-EGGDEIDVPGQDGEEPL--KKNKGGCGAQQPKLTI- 180
+ LKKI C+ +C + G + + G + +K KG + Q +
Sbjct: 132 MDNLQRKSLLKKIFLECRKTKECLKCGSTNGMIKKSGAFKIIHEKYKGKTESLQDYYALY 191
Query: 181 -EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYA 239
+ +K E K+ KK D L L + K+IS +D +++ ++P
Sbjct: 192 DDAIKYNPEMKSHIKKAQDD------------LNPLVALNLFKKISYQDIEIMNMDPVIG 239
Query: 240 RPDWMILQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHI 288
RP+ +IL + +PP +RPS DDLT +L+ I+ NE++R + I
Sbjct: 240 RPERLILTYMLVPPVSIRPSVPMDGGSGTNEDDLTMKLSEILHINEHIRSNVDRAEMSAI 299
Query: 289 ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
+ ++ LQ A Y ++++PG P + + ++ + RLK K GR RGNL GKRVDFS
Sbjct: 300 MEDW-DYLQASCAIYINSDVPGLP-LQMKPTKAVRGLSQRLKGKTGRFRGNLSGKRVDFS 357
Query: 349 ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 408
RTVI+PDP +NID++ VP IAL +TYPE VT YNIERL++ V GP PG A YI
Sbjct: 358 GRTVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPG---ANYI 414
Query: 409 IRDDGQRLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
I DG + L++ + L++G VERH+ DGD +LFNRQPSLHK+SIM H+ ++MP
Sbjct: 415 IYADGVKKWLKFGNREKFAAELKIGDIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVMP 474
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+ T R N V +PYNADFDGDEMN+H+PQ+ E RAE LM V +++P++ P++
Sbjct: 475 WRTLRFNECVCTPYNADFDGDEMNIHLPQTEEARAEATILMGVTNNLITPRNGEPLVAAT 534
Query: 528 QDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKV--PQPTILKPRPLWTGKQVFNLII 585
QD L I++RD F E+ F + + D + + P P ILKP LWTGKQ+F +++
Sbjct: 535 QDFLTASYLISRRDAFYERYRFALMCTHFADANEHIDLPPPAILKPVELWTGKQIFEVLL 594
Query: 586 PKQINLFRTAAWHADN---DKGI-LTAGDTLVRIEKGELLSGTLCKKTLGT-STGSLIHV 640
+ + + K + + D V EL+ G++ K +G + SL H+
Sbjct: 595 RPSVKSHVLCNFETRSRTYSKNLYMCPKDGYVYFRNSELMCGSIDKSIIGGGNKNSLFHI 654
Query: 641 IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKN 700
+ + P A + L +L FSIGI D + I A
Sbjct: 655 LMRDFSPTIAANCMTRLAKLCARFLGDQGFSIGIPDIKPAEDLDRKKREIIETAYKKCAV 714
Query: 701 LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760
+K + SL+ G +M ++FE K+NQ L+ RD+ G L N+ M GSK
Sbjct: 715 FLKDYESGSLQLSSGCSMEQTFEAKMNQTLSQIRDDCGKLCVNDLPNYNSPLIMGLCGSK 774
Query: 761 GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 820
GS INI+QM CVGQQ V G RIP GF +RT PHF P+S+GFV NS+ G+ P E
Sbjct: 775 GSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPHFKHFAKNPKSKGFVSNSFYTGMIPTE 834
Query: 821 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 880
FFFH MGGREGL+DTAVKT+ETGY+QRRL+KA+ED+ YD TVR+S+G ++QF+YG+DG
Sbjct: 835 FFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTVRDSIGGIVQFIYGDDG 894
Query: 881 MDSVWIESQ 889
+D +E++
Sbjct: 895 LDPAGMEAK 903
Score = 185 bits (469), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 123/391 (31%), Positives = 203/391 (51%), Gaps = 27/391 (6%)
Query: 1030 LLRSTFASKRVLKE-HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQM 1088
LL FA++ V+ + HR+T+ E + ++ ++ + PG +G + AQSIGEP TQM
Sbjct: 1059 LLGERFANEHVVNQIHRITKTQIELFLDICLDKYSRARIEPGTAVGAIGAQSIGEPGTQM 1118
Query: 1089 TLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALE 1148
TL TFH+AGV++ NVTLGVPR++EIIN AK I TP ++ L + A+ V +E
Sbjct: 1119 TLKTFHFAGVASMNVTLGVPRIKEIINAAKNISTPIITASL--NCDYDIRSARIVAGRIE 1176
Query: 1149 YTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMP-DEDIAPEKISPWLLRIELNRE 1207
TTL V T I+E V+ Y + D++ L++E+N +
Sbjct: 1177 KTTLGHV-------------ATHIKEVVKRAGCYLSIKIDKNFVDS------LQLEINSK 1217
Query: 1208 MMVDKKLSMAAVA---EKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESA 1264
+ S + E+I D L + + + + ++ + + P +
Sbjct: 1218 TISQSIASTKGLKLKPEQITTNGDYKLRIVPPANIREGSLYYLQFLKNNLPAVIVKGIPT 1277
Query: 1265 EDDVFLKKI-ESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRAL 1323
+ V + K+ E ++ + G +L AVM + TTSNH++E LGIE R +
Sbjct: 1278 VNRVVISKVDEKQERYQLLVEGYDLRAVMATPGIKGTHTTSNHIMECENTLGIETARNTI 1337
Query: 1324 LDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDI 1383
+ E+ ++++ G ++ RH+ +L D M+++G ++ ITR GI + +M SFE+T D
Sbjct: 1338 MSEIDMIMTSHGMSIDIRHVMLLADLMSFKGEILGITRFGIAKMKESVLMLASFEKTTDH 1397
Query: 1384 LLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
L DAAV D + GV+E I++G + P+GTG
Sbjct: 1398 LFDAAVHHRQDDIVGVSECIIMGVVIPLGTG 1428
>sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens
GN=POLR3A PE=1 SV=2
Length = 1390
Score = 615 bits (1585), Expect = e-174, Method: Compositional matrix adjust.
Identities = 365/938 (38%), Positives = 520/938 (55%), Gaps = 83/938 (8%)
Query: 7 YSPAEVAK-VRMVQFGILSPDEIRQMSVVQIEHGET---TERGKPKPGGLSDPRLGTIDR 62
+ +VAK + + FG+ SP+E+RQ + +Q+ + P G+ D R+GT ++
Sbjct: 6 FRETDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMGTSEK 65
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI-LADEDDHKF 121
CETC N+A+C GH+G+++L P FH+G+ + V+ I++ +C C I L+ E+ +F
Sbjct: 66 DRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQF 125
Query: 122 KQALK-----IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQP 176
LK + KKI D C+ K C CGA
Sbjct: 126 LDYLKRPGLTYLQKRGLKKKISDKCRKKNICHH---------------------CGAFNG 164
Query: 177 KLTIEGM-KMIAE-YKAQRKKND----------------DQEQLPEPVERKQTLTAERVL 218
+ G+ K+I E YK +K D ++E P ++ L VL
Sbjct: 165 TVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEHNKEVEPLLGRAQENLNPLVVL 224
Query: 219 GVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLA 267
+ KRI ED LL +NP+ +P +IL L +PP +RPS DDLT +L
Sbjct: 225 NLFKRIPAEDVPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLT 284
Query: 268 MIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICS 327
II N+ +++ +GA +I E LQ A Y ++EL G P + +
Sbjct: 285 EIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPKKWTRGFVQ 343
Query: 328 RLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIER 387
RLK K+GR RGNL GKRVDFS RTVI+PDP + ID++ VP +A LT+PE V NI
Sbjct: 344 RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINF 403
Query: 388 LKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK----KSSDHHLELGYKVERHLNDGD 443
L++LV+ GP PG A +I + Q R+LK + L+ G VERHL DGD
Sbjct: 404 LRKLVQNGPEVHPG---ANFIQQRHTQMK--RFLKYGNREKMAQELKYGDIVERHLIDGD 458
Query: 444 FVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAE 503
VLFNRQPSLHK+SIM H ++ P+ TFR N V +PYNADFDGDEMN+H+PQ+ E +AE
Sbjct: 459 VVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAE 518
Query: 504 VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK----DVFMNILMWW-ED 558
L LM +V+P++ P++ +QD L G +T +DTF ++ + +IL+ E
Sbjct: 519 ALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEK 578
Query: 559 FDGKVPQPTILKPRPLWTGKQVFNLII------PKQINLFRTAAWHADNDKGILTAGDTL 612
++P PTILKP LWTGKQ+F++I+ P + NL RT L A D+
Sbjct: 579 IKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANL-RTKGKQYCGKGEDLCANDSY 637
Query: 613 VRIEKGELLSGTLCKKTLGT-STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
V I+ EL+SG++ K TLG+ S ++ +++ + G + A + L +L FS
Sbjct: 638 VTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFS 697
Query: 672 IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
IGIGD ++ + ++ I+ L+ +PG T E+ E + + L+
Sbjct: 698 IGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELS 757
Query: 732 TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
RD AGS+ + L +SN+ M GSKGSFINISQM ACVGQQ + G R+P GF +R+
Sbjct: 758 VIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRS 817
Query: 792 LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
LPHF K P ++GFV NS+ GLTP EFFFH M GREGL+DTAVKT+ETGY+QRRLVK
Sbjct: 818 LPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVK 877
Query: 852 AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
++ED+ +YD TVR+S GD+IQF+YG DG+D +E +
Sbjct: 878 SLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGK 915
Score = 184 bits (468), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 121/384 (31%), Positives = 204/384 (53%), Gaps = 31/384 (8%)
Query: 1039 RVLKE-HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 1097
RVL + R+T E + +++++ + PG +G + AQSIGEP TQMTL TFH+AG
Sbjct: 998 RVLYQLDRITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057
Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE 1157
V++ N+TLGVPR++EIIN +K I TP ++ L + + A+ V+ +E T L ++E
Sbjct: 1058 VASMNITLGVPRIKEIINASKAISTPIITAQLDK--DDDADYARLVKGRIEKTLLGEISE 1115
Query: 1158 ATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREM----MVDKK 1213
E + PD +++ +E ++ LLR+E+N E + K
Sbjct: 1116 YIEEVFLPDDCFILVKLSLERIR------------------LLRLEVNAETVRYSICTSK 1157
Query: 1214 LSMAAVAEKINQEFDDDLTCIFNDDNADK-LILRIRIMNDEAPKGELND--ESAEDDVFL 1270
L + ++ E + C+ +N+ + ++ + ++ PK + E + + +
Sbjct: 1158 LRVKPGDVAVHGE---AVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHI 1214
Query: 1271 KKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
+ ++ + G NL AVM V RTTSN+ E+ + LGIEA R +++E++
Sbjct: 1215 DEQSGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYT 1274
Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
+ G ++ RH+ +L D MTY+G ++ ITR G+ + +M SFE+T D L DAA F
Sbjct: 1275 MVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYF 1334
Query: 1391 AESDYLRGVTENIMLGQLAPIGTG 1414
+ D + GV+E I++G IGTG
Sbjct: 1335 GQKDSVCGVSECIIMGIPMNIGTG 1358
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium
falciparum (isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 612 bits (1579), Expect = e-174, Method: Compositional matrix adjust.
Identities = 300/624 (48%), Positives = 411/624 (65%), Gaps = 50/624 (8%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI 60
+D PYS E+ +V+ ++ G+L P+ I+++SV +I + + + G P+ GGL+D R+GTI
Sbjct: 3 VDLNIPYSACELKRVKRLELGVLDPEIIKKISVCEIVNVDIYKDGFPREGGLNDIRMGTI 62
Query: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK 120
D + C TC N+ CPGHFGH+ELAKPM+H GFM VL+++R VC++C ++L + + K
Sbjct: 63 DYRTLCGTCNMNVKYCPGHFGHIELAKPMYHYGFMNVVLNVLRCVCYHCGRLLCNVNSSK 122
Query: 121 FKQALKIRNPKNRLKKILDACKNKTKC-----EGGDEI-----------DVPGQDGEEPL 164
K KI+ RL+K+ + C C E G I D+ + + +
Sbjct: 123 VKYIEKIKVNSLRLRKLAELCLGIRACDHSVEEEGLNINDNSLNNFYNNDLSNLNMNQQM 182
Query: 165 KKNKGG--------------CGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQ 210
NK CG QPK + EG M ++ +++ D E K+
Sbjct: 183 LLNKSNYTNIFEMVSKEDVDCGCVQPKYSREGPNMYIQFLHSSEEDID--------ESKR 234
Query: 211 TLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRP---------SDD 261
L+AE L +LK+I E+ +LG N P +IL +PIPPP RP DD
Sbjct: 235 KLSAEEALEILKKIRKEEMSILGFNSDRCVPASLILTCIPIPPPCARPYVQYGNQRSEDD 294
Query: 262 LTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP 321
LT +L I++ N L+RQ GA +H++ + LLQFHI T FDN++PG P AT RS +P
Sbjct: 295 LTLKLLDIVKTNIQLKRQTDRGAKSHVLQDLCSLLQFHITTLFDNDIPGMPIATTRSKKP 354
Query: 322 IKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT 381
IK+I +RLK KEGR+RGNLMGKRVDFSARTVIT DP +NID +GVP S+A+ LT+ ETVT
Sbjct: 355 IKAIRTRLKGKEGRLRGNLMGKRVDFSARTVITGDPNLNIDYIGVPKSVAMTLTFCETVT 414
Query: 382 PYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLND 441
P N + LK+LVE GP+ PG AKYIIRD+G + DLR+++++S+ LE GYKVERH+ D
Sbjct: 415 PLNYDNLKKLVERGPYEWPG---AKYIIRDNGTKYDLRHVRRNSEKELEYGYKVERHMTD 471
Query: 442 GDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 501
D++LFNRQPSLHKMSIMGH+ KI+PYSTFRLNLSVTSPYNADFDGDEMN+H+ QS ETR
Sbjct: 472 EDYILFNRQPSLHKMSIMGHKAKILPYSTFRLNLSVTSPYNADFDGDEMNLHLAQSHETR 531
Query: 502 AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDG 561
+E+ LM+V + IVSPQ N+PVMGIVQD+LL RK T+RD F+ K+ M++L+W ++
Sbjct: 532 SEIKHLMIVQRQIVSPQGNKPVMGIVQDSLLAIRKFTRRDNFLTKEEVMSLLIWIPYWNH 591
Query: 562 KVPQPTILKPRPLWTGKQVFNLII 585
+P P I+KPR LWTGKQ+F++++
Sbjct: 592 VIPTPAIIKPRALWTGKQIFSMLL 615
Score = 404 bits (1037), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/408 (50%), Positives = 274/408 (67%), Gaps = 7/408 (1%)
Query: 581 FNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHV 640
FN++ +INL R ++ + +D + D V I+ ELLSG +CK+T+G+S+GSLIHV
Sbjct: 736 FNMV---KINLMRDSSTSSKDDNPYCSINDGKVIIKNNELLSGIICKRTVGSSSGSLIHV 792
Query: 641 IWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKN 700
+W E+GPD + FL Q + N WL F++ D IA K + + + + K+K+ V
Sbjct: 793 LWHEMGPDKTKDFLSALQKVTNNWLEYVGFTVSCSDIIASNKVLGKVREILDKSKSEVSK 852
Query: 701 LIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760
L+++AQ LE +PG+++ ESFE +VN LN AR+ AG A +SL E NN+ +MV +GSK
Sbjct: 853 LVEKAQKGELECQPGKSLYESFETRVNNELNCAREMAGKVASESLDERNNIFSMVASGSK 912
Query: 761 GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQE 820
GS INISQ+ +CVGQQNVEGKRIPFGF R+LPHF K DYGPESRGFV NSYL GLTPQE
Sbjct: 913 GSIINISQIISCVGQQNVEGKRIPFGFNHRSLPHFIKFDYGPESRGFVSNSYLSGLTPQE 972
Query: 821 FFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDG 880
FFHAMGGREG+IDTA KTSETGYIQRRL+KAMED+MV+YD TVRNS GD+IQFLYGEDG
Sbjct: 973 VFFHAMGGREGIIDTACKTSETGYIQRRLIKAMEDVMVQYDRTVRNSYGDIIQFLYGEDG 1032
Query: 881 MDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKEL----RDV 936
M +IE Q +D +K+ E +K +++ DEE + +Y + D + + +++
Sbjct: 1033 MAGEYIEDQIIDLMKLDNKEINKLYKYNFDEEPFGKDYYIGNKNDGSRNTTYIDYNKQNI 1092
Query: 937 FDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDP 984
+ E ++L + L EI GD LP+N+ RLI A+ F P
Sbjct: 1093 LNQEFEELYKCKNYLCKEIFPDGDIRQHLPINMNRLIEYAKSQFPCIP 1140
Score = 365 bits (936), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 233/493 (47%), Positives = 281/493 (56%), Gaps = 105/493 (21%)
Query: 1285 GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLA 1344
G NL + C VD ++T SN ++EI EVLGIEAVRRALL ELR VISFD SYVNYRHL+
Sbjct: 1920 GCNLENIFCAPQVDFKKTVSNDIVEIFEVLGIEAVRRALLKELRTVISFDSSYVNYRHLS 1979
Query: 1345 ILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIM 1404
ILCD MT +G+LM+ITRHGINR D GP+++CSFEETV+ILL+AA FA+ D LRG+TENIM
Sbjct: 1980 ILCDVMTQKGYLMSITRHGINRVDKGPLIKCSFEETVEILLEAAAFAQVDNLRGITENIM 2039
Query: 1405 LGQLAPIGTGDCSLYLNDEMLKNAIE------------LQLPSYM-----EGLE--FGMT 1445
LGQL IGTG + ++++ L +A + P + +GL+ +
Sbjct: 2040 LGQLCKIGTGSFDIIIDNQKLNDANQNLETIQDLTSAGFTTPDSLHVITPDGLQSPVAIN 2099
Query: 1446 PARSPVSGTP-YHDGMMSP-------GYLFSPNLRLSPVTDAQFSP-----------YVG 1486
SP+ +P Y+ ++SP L SP L D SP +G
Sbjct: 2100 TINSPLPFSPTYNANLLSPTAPIDNVNNLLSPQYNLQNYGDNVMSPTSKDINNLDTLKLG 2159
Query: 1487 GMAFSPTSSPGYSPSSPGYSPSSPG--------------YSPTSP---GYSPTSPG---- 1525
G FSPT SP SP+S +SP SP +SP + Y+ SP
Sbjct: 2160 G-KFSPTQSPK-SPTSVMHSPFSPFDHQNQQPVDATNLLFSPKNNNIMNYNVFSPKPNIN 2217
Query: 1526 ---------YSPT-----------------SPGYSPTSPTYSPSSPGYSPTSPA------ 1553
YSP SP YSPTSPTY+ ++ YSPTSP
Sbjct: 2218 NNVIQSPNIYSPNPMLDIFSPKPQINHNIYSPSYSPTSPTYNANNAYYSPTSPKNQNDQM 2277
Query: 1554 -----YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1608
Y+ SP YS TSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP YSPTSP
Sbjct: 2278 NVNSQYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSP 2337
Query: 1609 AYSPTSPAYSPTSP-AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPA 1665
YSPTSP YSPTSP A + SP+YSP YS TSP +SPTSP+YS +SP Y S A
Sbjct: 2338 KYSPTSPKYSPTSPVAQNIASPNYSP----YSITSPKFSPTSPAYSISSPVYDKSGVVNA 2393
Query: 1666 YSPTSPGYSPTSP 1678
+ P SP Y SP
Sbjct: 2394 HQPMSPAYILQSP 2406
Score = 252 bits (644), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 123/275 (44%), Positives = 182/275 (66%), Gaps = 4/275 (1%)
Query: 979 TFKVDPRRPSDMHPMEVVEAVDKLQERL---KVVPGEDPLSVEAQKNATLFFNILLRSTF 1035
T K + S ++P++VV V+ E+L K + D LSVEAQ NAT+ LR+
Sbjct: 1308 TLKNNYDENSMLNPIDVVHKVNNFLEKLVIIKQINSNDTLSVEAQNNATILLKAHLRTYL 1367
Query: 1036 ASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1095
SK + + H+++ + +W++ EIE F +SL PGE +G +AAQSIGEPATQMTLNTFH+
Sbjct: 1368 NSKLLTQTHKVSVKGLDWLLQEIEKIFYKSLCHPGECVGALAAQSIGEPATQMTLNTFHF 1427
Query: 1096 AGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSV 1155
AGV +KNVTLGVPRL+E+IN+ K +KTPS +++L V++ +++AK++ LEYTTL+ +
Sbjct: 1428 AGVGSKNVTLGVPRLKELINIVKNVKTPSTTIYLDDMVSNDQQKAKDILTKLEYTTLKQL 1487
Query: 1156 TEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLS 1215
T ++ YDP+ TI+EED +V +YE PDED + W+LRI+L + +KKL+
Sbjct: 1488 TSHAQIIYDPNTTTTILEEDKSWVNEFYEFPDEDDTQYSLGEWVLRIQLTNIHVNEKKLT 1547
Query: 1216 MAAVAEKINQEF-DDDLTCIFNDDNADKLILRIRI 1249
M + I F D+L I+ DDN++ L+LRIR+
Sbjct: 1548 MKEIVYIIYSVFSSDELDIIYTDDNSEDLVLRIRV 1582
>sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 611 bits (1575), Expect = e-173, Method: Compositional matrix adjust.
Identities = 363/938 (38%), Positives = 518/938 (55%), Gaps = 83/938 (8%)
Query: 7 YSPAEVAK-VRMVQFGILSPDEIRQMSVVQIEHGETTERGK---PKPGGLSDPRLGTIDR 62
+ +VAK + + FG+ S +E+RQ + +Q+ + P G+ D R+GT ++
Sbjct: 6 FRETDVAKKISHICFGMKSAEEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGTSEK 65
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI-LADEDDHKF 121
CETC N+A+C GH+G+++L P FH+G+ + V+ I++ +C C I L+ E+ +F
Sbjct: 66 DRPCETCGKNLADCLGHYGYIDLELPCFHVGYFRAVIGILQMICKTCCHIMLSQEEKKQF 125
Query: 122 KQALK-----IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQP 176
LK + KKI D C+ K C CGA
Sbjct: 126 LDYLKRPGLTYLQKRGLKKKISDKCRKKNTCHH---------------------CGAFNG 164
Query: 177 KLTIEGM-KMIAE-YKAQRKKND----------------DQEQLPEPVERKQTLTAERVL 218
+ G+ K+I E YK +K D ++E P + ++ L VL
Sbjct: 165 TVKKCGLLKIIHEKYKTNKKVVDPIVSSFLQSFETAIEHNKEVEPLLGKAQENLNPLVVL 224
Query: 219 GVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLA 267
+ KRI ED LL +NP+ +P +IL L +PP +RPS DDLT +L
Sbjct: 225 NLFKRIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLT 284
Query: 268 MIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICS 327
II N+ +++ +GA +I E LQ A Y ++EL G P + +
Sbjct: 285 EIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPKKWTRGFVQ 343
Query: 328 RLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIER 387
RLK K+GR RGNL GKRVDFS RTVI+PDP + ID++ VP +A LT+PE V NI
Sbjct: 344 RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINF 403
Query: 388 LKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK----KSSDHHLELGYKVERHLNDGD 443
L++LV GP PG A +I + Q R+LK + L+ G VERHL DGD
Sbjct: 404 LRKLVRNGPEVHPG---ANFIQQRHTQMK--RFLKYGNREKMAQELKFGDIVERHLIDGD 458
Query: 444 FVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAE 503
VLFNRQPSLHK+SIM H ++ P+ TFR N V +PYNADFDGDEMN+H+PQ+ E +AE
Sbjct: 459 VVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAE 518
Query: 504 VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK----DVFMNILMWW-ED 558
L LM +V+P++ P++ +QD L G +T +DTF ++ + +IL+ E
Sbjct: 519 ALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEK 578
Query: 559 FDGKVPQPTILKPRPLWTGKQVFNLII------PKQINLFRTAAWHADNDKGILTAGDTL 612
++P PTILKP LWTGKQ+F++I+ P + NL RT L D+
Sbjct: 579 IKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANL-RTKGKQYCGRGEDLCVNDSY 637
Query: 613 VRIEKGELLSGTLCKKTLGT-STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
V I+ EL+SG++ K TLG+ S ++ +++ + G + A + L +L FS
Sbjct: 638 VTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYLSNRGFS 697
Query: 672 IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
IGIGD ++ + ++ I+ L+ +PG T E+ E + + L+
Sbjct: 698 IGIGDVTPGQGLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELS 757
Query: 732 TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
RD AGS+ + L +SN+ M GSKGSFINISQM ACVGQQ + G R+P GF +R+
Sbjct: 758 VIRDHAGSACLRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRS 817
Query: 792 LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
LPHF K P ++GFV NS+ GLTP EFFFH M GREGL+DTAVKT+ETGY+QRRLVK
Sbjct: 818 LPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVK 877
Query: 852 AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
++ED+ +YD TVR+S GD+IQF+YG DG+D +E +
Sbjct: 878 SLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGK 915
Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 204/382 (53%), Gaps = 27/382 (7%)
Query: 1039 RVLKE-HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 1097
RVL + R+T E + +++++ + PG +G + AQSIGEP TQMTL TFH+AG
Sbjct: 998 RVLYQLDRITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057
Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE 1157
V++ N+TLGVPR++EIIN +K I TP ++ L + + A+ V+ +E T L ++E
Sbjct: 1058 VASMNITLGVPRIKEIINASKAISTPIITAQLDK--DDDADYARLVKGRIEKTLLGEISE 1115
Query: 1158 ATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMA 1217
E + PD +++ +E ++ LLR+E+N E V + M+
Sbjct: 1116 YIEEVFLPDDCFILVKLSLERIR------------------LLRLEVNAET-VRYSICMS 1156
Query: 1218 AVAEKINQE--FDDDLTCIFNDDNADK-LILRIRIMNDEAPKGELND--ESAEDDVFLKK 1272
+ K + + C+ +N+ + ++ + ++ PK + E + + + +
Sbjct: 1157 KLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDE 1216
Query: 1273 IESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVIS 1332
++ + G NL AVM V RTTSN+ E+ + LGIEA R +++E++ +
Sbjct: 1217 QSGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMV 1276
Query: 1333 FDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAE 1392
G ++ RH+ +L D MTY+G ++ ITR G+ + +M SFE+T D L DAA F +
Sbjct: 1277 NHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQ 1336
Query: 1393 SDYLRGVTENIMLGQLAPIGTG 1414
D + GV+E I++G IGTG
Sbjct: 1337 KDSVCGVSECIIMGIPMNIGTG 1358
>sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 604 bits (1558), Expect = e-171, Method: Compositional matrix adjust.
Identities = 363/938 (38%), Positives = 517/938 (55%), Gaps = 83/938 (8%)
Query: 7 YSPAEVAK-VRMVQFGILSPDEIRQMSVVQIEHGETTERGK---PKPGGLSDPRLGTIDR 62
+ ++VAK + + FG+ SP+E+RQ + +Q+ + P G+ D R+GT ++
Sbjct: 6 FRESDVAKKISHICFGMKSPEEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGTSEK 65
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI-LADEDDHKF 121
CETC N+A+C GH+G+++L P FH+G+ K V+ I++ +C C +I L+ E+ +F
Sbjct: 66 DRPCETCGKNLADCLGHYGYIDLELPCFHVGYFKAVIGILQMICKTCCRIMLSVEEKKQF 125
Query: 122 KQALK-----IRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQP 176
LK + KK+ + C+ K C P CGA
Sbjct: 126 LDYLKRPGLTYLQKRGLKKKVSEKCRKKNTC---------------PY------CGAFNG 164
Query: 177 KLTIEGM-KMIAE-YKAQRKKND----------------DQEQLPEPVERKQTLTAERVL 218
+ G+ K+I E YK +K D ++E P ++ L VL
Sbjct: 165 TVKKCGLLKIIHEKYKTNKKVVDPIVSTFLQSFETAIEHNKEVEPLLGRAQENLNPLVVL 224
Query: 219 GVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS-----------DDLTHQLA 267
+ KRI ED LL +NP+ +P +IL L +PP +RPS DDLT +L
Sbjct: 225 NLFKRIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLCIRPSVVSDLKSGTNEDDLTMKLT 284
Query: 268 MIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICS 327
II N+ +++ +GA +I E LQ A Y ++EL G P + +
Sbjct: 285 EIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYINSELSGIP-LNMAPKKWTRGFVQ 343
Query: 328 RLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIER 387
RLK K+GR RGNL GKRVDFS RTVI+PDP + ID++ VP +A LT+PE V NI
Sbjct: 344 RLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINF 403
Query: 388 LKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK----KSSDHHLELGYKVERHLNDGD 443
+++LV GP PG A +I + Q R+LK + L+ G VERHL DGD
Sbjct: 404 MRKLVRNGPDVHPG---ANFIQQRHTQMK--RFLKYGNREKMAQELKFGDIVERHLIDGD 458
Query: 444 FVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAE 503
VLFNRQPSLHK+SIM H ++ P+ TFR N V +PYNADFDGDEMN+H+PQ+ E +AE
Sbjct: 459 IVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEAKAE 518
Query: 504 VLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEK----DVFMNILMWW-ED 558
L LM +V+P++ P++ +QD L G +T +DTF ++ + +IL+ E
Sbjct: 519 ALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEK 578
Query: 559 FDGKVPQPTILKPRPLWTGKQVFNLII------PKQINLFRTAAWHADNDKGILTAGDTL 612
++P P ILKP LWTGKQVF+ I+ P + NL RT L D+
Sbjct: 579 IKVRLPPPAILKPVTLWTGKQVFSSILKPSDDCPVKANL-RTKGKQYCGKGEDLCYNDSY 637
Query: 613 VRIEKGELLSGTLCKKTLGT-STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
V I+ EL+SG++ K TLG+ S ++ +++ + G A + L +L FS
Sbjct: 638 VTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYLSNRGFS 697
Query: 672 IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
IGIGD ++ + + I+ L+ +PG T E+ E + + L+
Sbjct: 698 IGIGDVTPGQGLLKAKYELLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELS 757
Query: 732 TARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRT 791
RD AGS+ + L +SN+ M GSKGSFINISQM ACVGQQ + G R+P GF +R+
Sbjct: 758 VIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRS 817
Query: 792 LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 851
LPHF K P ++GFV NS+ GLTP EFFFH M GREGL+DTAVKT+ETGY+QRRLVK
Sbjct: 818 LPHFEKHSKLPAAKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVK 877
Query: 852 AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQ 889
++ED+ +YD TVR+S GD+IQF+YG DG+D +E +
Sbjct: 878 SLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAMEGK 915
Score = 181 bits (458), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 120/384 (31%), Positives = 204/384 (53%), Gaps = 31/384 (8%)
Query: 1039 RVLKE-HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG 1097
RVL + R+T E + +++++ + PG +G + AQSIGEP TQMTL TFH+AG
Sbjct: 998 RVLYQLDRITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057
Query: 1098 VSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTE 1157
V++ N+TLGVPR++EIIN +K I TP ++ L + + A+ V+ +E T L ++E
Sbjct: 1058 VASMNITLGVPRIKEIINASKAISTPIITAQLDK--DDDPDFARLVKGRIEKTLLGEISE 1115
Query: 1158 ATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREM----MVDKK 1213
E + PD +++ +E ++ LLR+E+N E + K
Sbjct: 1116 YIEEVFLPDDCFILVKLSLERIR------------------LLRLEVNAETVRYSICISK 1157
Query: 1214 LSMAAVAEKINQEFDDDLTCIFNDDNADK-LILRIRIMNDEAPKGELND--ESAEDDVFL 1270
L + ++ E + C+ +N+ + ++ + +E PK + E + + +
Sbjct: 1158 LRVKPGDVAVHGE---AVVCVTPRENSKSSMYYVLQSLKEELPKVVVQGIPEVSRAVIHI 1214
Query: 1271 KKIESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
+ ++ + G NL AVM V +T+SN+ E+ + LGIEA R +++E++
Sbjct: 1215 DEQSGKEKYKLLVEGDNLRAVMATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYT 1274
Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
+ G ++ RH+ +L D MTY+G ++ ITR G+ + +M SFE+T D L DAA F
Sbjct: 1275 MVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYF 1334
Query: 1391 AESDYLRGVTENIMLGQLAPIGTG 1414
+ D + GV+E I++G IGTG
Sbjct: 1335 GQKDSVCGVSECIIMGIPMNIGTG 1358
>sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC1 OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 1530
Score = 565 bits (1455), Expect = e-159, Method: Compositional matrix adjust.
Identities = 347/948 (36%), Positives = 505/948 (53%), Gaps = 95/948 (10%)
Query: 5 FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKM 64
P++P E++ + +G+LS +++ ++SV+ G K G++D RLG DR
Sbjct: 20 LPHAPVEISAL---HYGLLSRNDVHRLSVLPCRR----VVGDVKEYGVNDARLGVCDRLS 72
Query: 65 KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADE---DDHKF 121
CETC N EC GH GH++L P+FH+GF TVL I R++C CS +L D+ D +K
Sbjct: 73 ICETCGLNSIECVGHPGHIDLEAPVFHLGFFTTVLRICRTICKRCSHVLLDDTEIDYYKR 132
Query: 122 KQALKIRNPKNRLKKI----LDACKNKT--KCEGGDEI--------------DVPGQDGE 161
+ + P R I DA K + KC G + + V + GE
Sbjct: 133 RLSSSSLEPLQRTMLIKTIQTDAYKTRVCLKCGGLNGVVRRVRPMRLVHEKYHVEPRRGE 192
Query: 162 EPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVL 221
P ++N GG + + K++ E + + +PV +Q A
Sbjct: 193 GP-RENPGGFFDAELRTACAYNKVVGECR------EFVHDFLDPVRVRQLFLA------- 238
Query: 222 KRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIR 271
+ + LLGL P + P +++ L +PP PVRP DDLT Q I+
Sbjct: 239 --VPPGEVILLGLAPGVS-PTDLLMTTLLVPPVPVRPRGCAGTTTVRDDDLTAQYNDILV 295
Query: 272 HNENLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKA 331
+ + + A +E ++LQ A D+ LPG P + S +KS RLK+
Sbjct: 296 STDTM---QDGSLDATRYTETWEMLQMRAARLLDSSLPGFPPNVRTS--DLKSYAQRLKS 350
Query: 332 KEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKEL 391
K GR R NL GKRVD+S R+VI+PDP +++D+L VP +A LTYP+ V N E ++ L
Sbjct: 351 KHGRFRCNLSGKRVDYSGRSVISPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRL 410
Query: 392 VEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHH-----LELGYKVERHLNDGDFVL 446
V GPH PG T Y+ ++ ++ LK D H L +G VERH+ +GD VL
Sbjct: 411 VRNGPHVHPGATTV-YLAQEGSKK----SLKNERDRHRLAARLAVGDIVERHVMNGDLVL 465
Query: 447 FNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLE 506
FNRQPSLH++S+M HR +++P+ TFR N +PYNADFDGDEMN+H Q+ + RAE L+
Sbjct: 466 FNRQPSLHRVSMMAHRARVLPFRTFRFNECCCAPYNADFDGDEMNVHFVQTEKARAEALQ 525
Query: 507 LMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWED--FDGKVP 564
LM + I+S ++ P++ QD L +T RD F ++ F ++ W ++P
Sbjct: 526 LMSTARNIISAKNGEPIIACTQDFLAAAYLVTSRDVFFDRGEFSQMVSHWLGPVTQFRLP 585
Query: 565 QPTILKPRPLWTGKQVFNLII------------PKQINLFRTAAWHADNDKGILTAGDTL 612
P ILKP LWTGKQ+F LI+ + H ++G + D+
Sbjct: 586 IPAILKPVELWTGKQLFELIVRPSPEVDVLLSFEAPTKFYTRKGKHDCAEEGYVAFLDSC 645
Query: 613 VRIEKGELLSGTLCKKTLGT-STGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
+SG L KK LG + L + G + + + +L FS
Sbjct: 646 -------FISGRLDKKLLGGGAKDGLFARLHTIAGGGYTARVMSRIAQFTSRYLTNYGFS 698
Query: 672 IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLN 731
+G+GD + + ++++ LIK A+ + P PG T+ +S E ++N L+
Sbjct: 699 LGLGDVAPTPELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLEARLNTELS 758
Query: 732 TARDEAGSSAQKSLSESNNL-KAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDR 790
RDE G++A ++LS NN MV +GSKGS +NI+QM ACVGQQ V GKRI F DR
Sbjct: 759 KVRDECGTAAVQTLSIHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDR 818
Query: 791 TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
+LPHF + + P +RGFV NS+ GL+P EFFFH M GREGL+DTAVKT+ETGYI RRL+
Sbjct: 819 SLPHFHRFEEAPAARGFVANSFYSGLSPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLM 878
Query: 851 KAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKK 898
KAME++ V+YDGTVRN+ GDVIQ +GEDG+D +E + L +++
Sbjct: 879 KAMENLSVRYDGTVRNTKGDVIQLRFGEDGLDPQLMEGNSGTPLNLEQ 926
Score = 158 bits (399), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 124/391 (31%), Positives = 194/391 (49%), Gaps = 37/391 (9%)
Query: 1046 LTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1105
LTR I + S++L+ PG G +AAQS+GEP+TQMTL TFH+AGV++ ++T
Sbjct: 1118 LTRGMVTRFIAQCASKYLRKACEPGTPCGAIAAQSVGEPSTQMTLRTFHFAGVASMSITQ 1177
Query: 1106 GVPRLREIINVAKKIKTPSLS--VFLKPG----VNSTKERAKNVQCALEYTTLRSV-TEA 1158
GVPRL E+IN + I TP ++ V L G ++RA+ V+ +E LR V +E
Sbjct: 1178 GVPRLVEVINANRNIATPVVTAPVLLMEGEENHCEIFRKRARFVKAQIERVLLREVVSEI 1237
Query: 1159 TEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMA- 1217
EV D + +++ + M K+ + I + + ++ +M+
Sbjct: 1238 VEVCSDTEF----------YLRVHLNMS----VITKLHLPINAITVRQRILAAAGHTMSP 1283
Query: 1218 --AVAEKINQEFDDDLTCI---FNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKK 1272
+ E + F D + F D LR RI+ G L D + +
Sbjct: 1284 LRMLNEDCIEVFSLDTLAVYPHFQDARWVHFSLR-RIL------GLLPDVVVGGIGGINR 1336
Query: 1273 --IESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVV 1330
I SN TE+ G L AVM VD+ R NH+ + VLGIEA RR ++DE++ +
Sbjct: 1337 AMISSNG-TEVLAEGAELRAVMNLWGVDSTRVVCNHVAVVERVLGIEAARRVIVDEIQNI 1395
Query: 1331 ISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVF 1390
+ ++ RH+ +L D MT RG ++ ITR+GI + + + SFE T D L +AA
Sbjct: 1396 LKAYSLSIDVRHVYLLADLMTQRGVVLGITRYGIQKMNFNVLTMASFERTTDHLYNAAAT 1455
Query: 1391 AESDYLRGVTENIMLGQLAPIGTGDCSLYLN 1421
D V+++I++G+ P+GT L L+
Sbjct: 1456 QRVDRDLSVSDSIIVGKPVPLGTTSFDLLLD 1486
>sp|P28364|RPB1_EUPOC DNA-directed RNA polymerase II subunit RPB1 (Fragment) OS=Euplotes
octocarinatus GN=RPB1 PE=3 SV=1
Length = 478
Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust.
Identities = 241/496 (48%), Positives = 326/496 (65%), Gaps = 34/496 (6%)
Query: 3 TRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDR 62
T + S + KVR +QFG+L P EI+ MSVVQ+E+ + + G P GG++D R+GT+++
Sbjct: 5 TIYTESTMDFQKVRKIQFGLLDPKEIQAMSVVQVENEKIYDNGIPTDGGINDLRMGTMEK 64
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
M+C TC + ECPGHFGH+ELA+P+FHIGF+ V I++ VCFNC+K+L + K+
Sbjct: 65 AMRCSTCQGDSKECPGHFGHIELAQPVFHIGFIDLVKKILKCVCFNCNKLLITDKHDKYS 124
Query: 123 QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEG 182
++++PK +L K+ CK+ C D +G G +QP+L G
Sbjct: 125 ALKRVKDPKLKLNKVYKVCKDIKVCGKADRKSETYTEGS----------GQKQPRLRKTG 174
Query: 183 MKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPD 242
+K+ AE+ E P + K+ L+A L +L RIS +DC+ LG + ARP+
Sbjct: 175 LKIKAEFPI-------DEDDPSTNDNKRDLSASECLKILGRISPDDCKFLGFDMVLARPE 227
Query: 243 WMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEF 292
W+I+ LP+ PPPVRPS DDLTHQ I++ N LR+ HII+E
Sbjct: 228 WLIISRLPVAPPPVRPSVCMGSNIRQEDDLTHQYQQILKANNQLRKHL--STANHIINEN 285
Query: 293 AQLLQFHIATYFDNELPGQPRATQRS-GRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
QLLQF+ AT DNE GQ + +S G+ IK+I +RLK KEGR+RGNLMGKRVDFSART
Sbjct: 286 YQLLQFYCATLIDNEQAGQMVSRHKSGGKAIKAIRARLKGKEGRLRGNLMGKRVDFSART 345
Query: 352 VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
VIT DPT+++DQLGVP SIA N+T PE VTP NI+ +++LV GP+ P GAKYI +
Sbjct: 346 VITCDPTLDLDQLGVPRSIAENITIPEVVTPQNIDEMRKLVINGPNKWP---GAKYIKGE 402
Query: 412 DGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
G+ +DL Y K+++ ++ GY +ERHL + DFVLFNRQPSLHKMSIMGHR+K++PYSTF
Sbjct: 403 GGKMIDLSY-AKTTETFIDYGYVIERHLKNDDFVLFNRQPSLHKMSIMGHRVKVLPYSTF 461
Query: 472 RLNLSVTSPYNADFDG 487
RLNLSVT+PYNADFDG
Sbjct: 462 RLNLSVTAPYNADFDG 477
>sp|P91875|RPA1_DROME DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila melanogaster
GN=RpI1 PE=1 SV=2
Length = 1642
Score = 436 bits (1121), Expect = e-121, Method: Compositional matrix adjust.
Identities = 353/1084 (32%), Positives = 534/1084 (49%), Gaps = 149/1084 (13%)
Query: 242 DWMILQVLPIPPPPVRPSDDL-------------------THQLAMIIRH----NENLRR 278
D + LP+ PP RP + + H L +++++ E L
Sbjct: 293 DLFFMDTLPVTPPRARPLNMVGDMLKGNPQTDIYINIIENNHVLNVVLKYMKGGQEKLTE 352
Query: 279 QER------NGAPAHIISEFAQL-LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKA 331
+ + G AH A L LQ + D + + +SG +K I ++
Sbjct: 353 EAKAAYQTLKGETAHEKLYTAWLALQMSVDVLLDVNMSRE----MKSGEGLKQI---IEK 405
Query: 332 KEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKEL 391
K G IR ++MGKRV+++ARTVITPDP IN+D++G+P A L+YP VT +N+ L+++
Sbjct: 406 KSGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKM 465
Query: 392 VEYGPHPPPGKTGAKYIIRDDGQRLDL---RYLKKSSDHHLEL-----GYK-VERHLNDG 442
V GP PG A YI +G + K+ S L L G K V RH+ +G
Sbjct: 466 VMNGPDVHPG---ANYIQDKNGFTTYIPADNASKRESLAKLLLSNPKDGIKIVHRHVLNG 522
Query: 443 DFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETR 501
D +L NRQPSLHK SIMGH+ +I+ TFRL+ S YNADFDGDEMN H PQS R
Sbjct: 523 DVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEVAR 582
Query: 502 AEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD-----VFMNILMWW 556
AE L+ V + P+ P+ G++QD ++ K++ R F ++ VF +
Sbjct: 583 AEAYNLVNVASNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNREDYQQLVFQGLSQLK 642
Query: 557 EDFDGKVPQPTILKPRPLWTGKQVFNLIIP-------KQINL--FRTAA---WHADNDK- 603
+D K+ PTILKP LW+GKQ+ + II ++INL F A W+ +
Sbjct: 643 KDI--KLLPPTILKPAVLWSGKQILSTIIINIIPEGYERINLDSFAKIAGKNWNVSRPRP 700
Query: 604 ---GILTAGDTL----VRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGH 656
G G+ L V+I GELL G L K+ G +T LIH ++E G D + L
Sbjct: 701 PICGTNPEGNDLSESQVQIRNGELLVGVLDKQQYGATTYGLIHCMYELYGGDVSTLLLTA 760
Query: 657 TQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR 716
+ ++L F++G+ D + I + +N + + A + EP P
Sbjct: 761 FTKVFTFFLQLEGFTLGVKDILVTDVADRKRRKIIRECRNVGNSAVAAALELEDEP-PHD 819
Query: 717 TMMESFE--------------NKVNQVLNTARDEAGSSAQ-KSLSE---SNNLKAMVTAG 758
++E E K +L+ ++ S+ + L SNNL+ MV +G
Sbjct: 820 ELVEKMEAAYVKDSKFRVLLDRKYKSLLDGYTNDINSTCLPRGLITKFPSNNLQLMVLSG 879
Query: 759 SKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTP 818
+KGS +N Q++ +GQ +EGKR P ++LP FT + P+S GF++ ++ G+ P
Sbjct: 880 AKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGGFIDGRFMTGIQP 939
Query: 819 QEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGE 878
Q+FFFH M GREGLIDTAVKTS +GY+QR L+K +E + V YD TVR+S V+QFLYGE
Sbjct: 940 QDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLTVRDSDNSVVQFLYGE 999
Query: 879 DGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQ----EYIDDLKTI---- 930
DG+D + KS+F +F D N +L+ + + D + +
Sbjct: 1000 DGLDIL-------------KSKFFND-KFCADFLTQNATAILRPAQLQLMKDEEQLAKVQ 1045
Query: 931 ---KELRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRP 987
K +R + KL A + E+ + P +N K RR
Sbjct: 1046 RHEKHIRSWEKKKPAKLRAAFTHFSEELREEVEVKRPNEINSK------------TGRRR 1093
Query: 988 SDMHPMEV---VEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEH 1044
D +++ +A DK R K DP +V K + ++ R +++++ ++
Sbjct: 1094 FDEGLLKLWKKADAEDKALYRKKYARCPDP-TVAVYKQDLYYGSVSER----TRKLITDY 1148
Query: 1045 RLTREAFEWVIGEI-ESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
+ A + I +I + ++SL APGE +G +AAQSIGEP+TQMTLNTFH+AG NV
Sbjct: 1149 AKRKPALKETIADIMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAGRGEMNV 1208
Query: 1104 TLGVPRLREIINVA-KKIKTPSLSVFLKPGVNSTKERAK-NVQCALEYTTLRSVTEATEV 1161
TLG+PRLREI+ +A IKTPS+ + +KPG E+ + N+ L V +T +
Sbjct: 1209 TLGIPRLREILMLASSNIKTPSMDIPIKPGQQHQAEKLRINLNSVTLANLLEYVHVSTGL 1268
Query: 1162 WYDPDPMGTIIEEDVEFVKSYYEMPDED--IAPEKISPWLLRIELNREMMVDKKLSMAAV 1219
DP+ E D+ F E+ ED + P+ I ++ + + + K+S A+
Sbjct: 1269 TLDPERS---YEYDMRFQFLPREVYKEDYGVRPKHIIKYMHQTFFKQLIRAILKVSNASR 1325
Query: 1220 AEKI 1223
KI
Sbjct: 1326 TTKI 1329
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 59/97 (60%), Gaps = 3/97 (3%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMK-CETCTANMAE 75
++F + + EIR++SVV++ G T + G PGGL D R+G+ R M C TC + +
Sbjct: 16 LEFAVFTDQEIRKLSVVKVITGITFDALGHAIPGGLYDIRMGSYGRCMDPCGTCL-KLQD 74
Query: 76 CPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI 112
CPGH GH+EL P+++ F+K V ++ C +C K+
Sbjct: 75 CPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLHCYKL 111
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 1285 GVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
G+N+ + H + D R SN + I GIEA + ++ E+ V G V+ RHL
Sbjct: 1504 GINIGEMFQHNKILDLNRLYSNDIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHL 1563
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
+++ D MT+ G ++R G+ + + P+ + SFE ++ L AA F +D L + +
Sbjct: 1564 SLIADYMTFDGTFQPLSRKGME-HSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRL 1622
Query: 1404 MLGQLAPIGTGDCSL 1418
M+G GTG L
Sbjct: 1623 MVGLPVRNGTGAFEL 1637
>sp|P42486|RPB1_ASFB7 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (strain Badajoz 1971 Vero-adapted)
GN=Ba71V-99 PE=3 SV=1
Length = 1450
Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust.
Identities = 393/1505 (26%), Positives = 676/1505 (44%), Gaps = 184/1505 (12%)
Query: 10 AEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
A A++ VQF I ++ ++ V+++ E P GG+ D R+GT D KC TC
Sbjct: 3 AGYAEIAAVQFNIAGDNDHKRQGVMEVTISNLFEGTLPAEGGIYDARMGTTDHHYKCITC 62
Query: 70 TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRN 129
+ +C GH G L++ P+ F+ + +R +C NC + D LK
Sbjct: 63 SHQRKQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNCGAPIVD---------LKRYE 113
Query: 130 PKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEY 189
R K++++A ++T+ G + V C A PK+ + +
Sbjct: 114 HLIRPKRLIEAASSQTE---GKQCYV---------------CKAVHPKIVKDSEDYFTFW 155
Query: 190 KAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL 249
Q+ K D L + + + R++ + LG K + P+ ++L+ +
Sbjct: 156 VDQQGKIDK-------------LYPQIIREIFSRVTYDTVVKLG-RSKNSHPEKLVLKAI 201
Query: 250 PIPPPPVRPS------------DDLTHQLAMIIRHN----ENLRRQERNGAPAHIISEFA 293
IPP +RP D+ + + ++R N ++L+ P +I
Sbjct: 202 QIPPISIRPGIRLGIGSGPQSFHDINNVIQYLVRKNLLIPKDLQIVRGQKIPLNIDRNLQ 261
Query: 294 QLLQFHIATYFDN------ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+ Q + D+ + R RP SI RL KEGRIR +L+G +V
Sbjct: 262 TIQQLYYNFLLDSVSTTATQGGTGKRGIVMGARPAPSIMRRLPRKEGRIRKSLLGSQVWS 321
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
+R+ I + +++D++G P S A L ETV YNI RL G PG +
Sbjct: 322 ISRSTICGNSDLHLDEVGYPISFARTLQVAETVQHYNINRLMPYFLNGKRQYPGCSRVYK 381
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM- 466
I D+ LK+ D LE+G + R + GD FNRQPSL + SI HRI ++
Sbjct: 382 QITQSVH--DIEGLKQ--DFRLEVGDILYRDVVTGDVAFFNRQPSLERSSIGVHRIVVLE 437
Query: 467 --PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 524
STF++N+S + YNADFDGD+MN+ VP S +R E L V +S +S+ PV
Sbjct: 438 NPKISTFQMNVSACAWYNADFDGDQMNLWVPWSVMSRVEAELLCSVRNWFISTKSSGPVN 497
Query: 525 GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTIL---KPRPLWTGKQVF 581
G VQD+ +G +T+ +T + K+V MN L F P P L GK V
Sbjct: 498 GQVQDSTVGSFLLTRTNTPMGKNV-MNKLHAMGLFQTTQTDPPCFANYSPTDLLDGKSVV 556
Query: 582 NLIIPKQ-INLFRTAAWHADNDKGIL--TAGDTLVRIEKGELLSGTLCKKTLGT-STGSL 637
++++ + IN R W+++ + D +I GEL+ G L KK +G S+G +
Sbjct: 557 SMLLKQTPINYQRAPTWYSEVYAPYMHYNKQDISTQIRNGELIEGVLDKKAVGAGSSGGI 616
Query: 638 IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNN 697
H+I GP A K + TQ L ++ F++ D + + + + + I+K
Sbjct: 617 YHLISRRYGPQQALKMIFATQQLALNYVRNAGFTVSTADMLLTPEAHQEVQEIINKLLLE 676
Query: 698 VKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR--DEAGSSAQKSLS-ESNNLKAM 754
+ + + + P G T + +E LN + D S++ E+N L M
Sbjct: 677 SEEINNRLLHGDIMPPIGLTTHDFYE---KLQLNALKFPDRILKPIMNSINPETNGLFQM 733
Query: 755 VTAGSKGSFINISQMTACVGQQNVEGKRI--PFGFVDRTLPHFTKDDYGPESRGFVENSY 812
V G+KGS N+ + A +GQ + +RI F F RTL ++ + ++ GF+ NSY
Sbjct: 734 VATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSF-GRTLVYYPRFALEAQAYGFICNSY 792
Query: 813 LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 872
+ GLT EF F M GR LI+ A+ TS TGY R+ + ++ +V Y V ++
Sbjct: 793 IAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFGLQSCIVDYYRRVSID-TRLV 851
Query: 873 QFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKE 932
Q LYGEDG+D+ +E+ +++ + E + F++ + + ++ +K+
Sbjct: 852 QQLYGEDGLDARQLETVRFETIMLSDQELEDKFKYTGIQSPL--------FEEEFSRLKK 903
Query: 933 LRDVFDAEVQKLEADRY-QLATEIATSGDSSWPLPVNLKRLIWNA--QKTFKVDP-RRPS 988
RD + +E + QL T++ +PVN+ ++ N T V P S
Sbjct: 904 DRDKYRQIFLNVENFNFSQLLTDVR-------QVPVNVASIVKNILLSSTSGVLPFDEKS 956
Query: 989 DMHPMEVVEA---------VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKR 1039
+ +V+ ++ +QERL + P+ V ++ A L +L+R A+ +
Sbjct: 957 ILQKYAMVKTFCKNLPYVFINNIQERL-----QTPIPVYLKRAAAL-MRMLIRIELATVK 1010
Query: 1040 VLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1099
L +T E ++ I ++ QSL+ GE +G +AAQS+ EP TQ L++ H +
Sbjct: 1011 TLN---ITCEQMSAILDLIRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDSHHRSVAG 1067
Query: 1100 AKNVTLGVPRLREIINVAKKIKTPSLSVFL----KPGVNSTKERAKNVQCALEYTTLRSV 1155
N + G+ R +EI + AK ++ S L P V + K A+ + ++E T +
Sbjct: 1068 GTNKS-GIVRPQEIFS-AKPVEAEQSSEMLLRLKNPEVETNKTYAQEIANSIELITFERL 1125
Query: 1156 TEATEVWYD------PDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMM 1209
+ Y+ + M DVE++ + E PE I+ W +R+ELN+ M
Sbjct: 1126 ILQWHLLYETYSSTKKNVMYPDFASDVEWMTDFLENHPLLQPPEDIANWCIRLELNKTTM 1185
Query: 1210 VDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI-MNDEAPKGELNDESAEDDV 1268
+ K +S+ ++ + + + ++ A + + IRI + + A + N A D+
Sbjct: 1186 ILKSISLESIINSLRAKHPNTYIMHSVENTASGIPIIIRIYLRESAFRRSTNTRMATDE- 1244
Query: 1269 FLKKIESNMLTEM---ALRGV------------------------------------NLL 1289
KI N++ ++ +RG+ N+
Sbjct: 1245 ---KIAVNVVDKLLNSTIRGIPGIKNANVVKLMRHRVDAQGKLVRLDNIYAIKTNGTNIF 1301
Query: 1290 AVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDT 1349
M +++D S+ + + +E+ GIEA R+ ++ E+R V+ G N+RHL + D
Sbjct: 1302 GAMLDDNIDPYTIVSSSIGDTMELYGIEAARQKIISEIRTVMGDKGP--NHRHLLMYADL 1359
Query: 1350 MTYRGHLMAITRHGIN-RNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQL 1408
MT G + ++ + G+N R + ++R + V +L DAAV + + + G+ ++G +
Sbjct: 1360 MTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAVDSAVNPIYGIAAPTLMGSV 1419
Query: 1409 APIGT 1413
IGT
Sbjct: 1420 PRIGT 1424
>sp|Q65215|RPB1_ASFM2 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Tick/Malawi/Lil 20-1/1983)
GN=Mal-107 PE=3 SV=2
Length = 1450
Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust.
Identities = 392/1505 (26%), Positives = 675/1505 (44%), Gaps = 184/1505 (12%)
Query: 10 AEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
A A++ VQF I ++ ++ V+++ E P GG+ D R+GT D KC TC
Sbjct: 3 AGYAEIAAVQFNIAGDNDHKRQGVMEVTISNLFEGTLPAEGGIYDARMGTTDHHYKCITC 62
Query: 70 TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRN 129
+ +C GH G L++ P+ F+ + +R +C NC + D LK
Sbjct: 63 SHQRKQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNCGAPIVD---------LKRYE 113
Query: 130 PKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEY 189
R K++++A +T+ G + V C PK+ + +
Sbjct: 114 HLIRPKRLVEAASGQTE---GKQCYV---------------CKVIHPKIIKDSEDYFTFW 155
Query: 190 KAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL 249
Q+ K D L + + + R++ + LG K + P+ ++L+ +
Sbjct: 156 VDQQGKIDK-------------LYPQIIREIFSRVTYDTVVKLG-RSKNSHPEKLVLKAI 201
Query: 250 PIPPPPVRPS------------DDLTHQLAMIIRHN----ENLRRQERNGAPAHIISEFA 293
IPP +RP D+ + + ++R N ++L+ P ++
Sbjct: 202 QIPPISIRPGIRLGIGSGPQSFHDINNVIQYLVRKNLLIPKDLQIVRGQKIPLNVDRNLQ 261
Query: 294 QLLQFHIATYFDN------ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+ Q + D+ + R RP SI RL KEGRIR +L+G +V
Sbjct: 262 TIQQLYYNFLLDSVSTTATQGGTGKRGIVMGARPAPSIMRRLPRKEGRIRKSLLGSQVWS 321
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
+R+ I + +++D++G P S A L ETV YNI RL G PG +
Sbjct: 322 ISRSTICGNSDLHLDEVGYPISFARTLQVAETVQHYNINRLMPYFLNGKRQYPGCSRVYK 381
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM- 466
I D+ LK+ D LE+G + R + GD FNRQPSL + SI HRI ++
Sbjct: 382 QITQSVH--DIEGLKQ--DFRLEVGDILYRDVVTGDVAFFNRQPSLERSSIGVHRIVVLE 437
Query: 467 --PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 524
STF++N+S + YNADFDGD+MN+ VP S +R E L V +S +S+ PV
Sbjct: 438 NPKISTFQMNVSACAWYNADFDGDQMNLWVPWSVMSRVEAELLCSVRNWFISTKSSGPVN 497
Query: 525 GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTIL---KPRPLWTGKQVF 581
G VQD+ +G +T+ +T + K+V MN L F P P L GK V
Sbjct: 498 GQVQDSTVGSFLLTRTNTPMGKNV-MNKLHAMGLFQTTQTDPPCFANYSPTDLLDGKSVV 556
Query: 582 NLIIPKQ-INLFRTAAWHADNDKGIL--TAGDTLVRIEKGELLSGTLCKKTLGT-STGSL 637
++++ + IN R W+++ + D +I GEL+ G L KK +G S+G +
Sbjct: 557 SMLLKQTPINYQRAPTWYSEVYAPYMHYNKQDISTQIRNGELIEGVLDKKAVGAGSSGGI 616
Query: 638 IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNN 697
H+I GP A K + TQ L ++ F++ D + + + + + I++
Sbjct: 617 YHLISRRYGPQQALKMIFATQQLALNYVRNAGFTVSTADMLLTPEAHQEVQEIINELLLE 676
Query: 698 VKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR--DEAGSSAQKSLS-ESNNLKAM 754
+ + + + P G T + +E LN + D S++ E+N L M
Sbjct: 677 SEEINNRLLHGDIMPPIGLTTHDFYE---KLQLNALKFPDRILKPIMNSINPETNGLFQM 733
Query: 755 VTAGSKGSFINISQMTACVGQQNVEGKRI--PFGFVDRTLPHFTKDDYGPESRGFVENSY 812
V G+KGS N+ + A +GQ + +RI F F RTL ++ + ++ GF+ NSY
Sbjct: 734 VATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSF-GRTLVYYPRFALEAQAYGFICNSY 792
Query: 813 LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 872
+ GLT EF F M GR LI+ A+ TS TGY R+ + ++ +V Y V ++
Sbjct: 793 IAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFGLQSCIVDYYRRVSID-TRLV 851
Query: 873 QFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKE 932
Q LYGEDG+D+ +E+ +++ + E + F++ + + ++ +K+
Sbjct: 852 QQLYGEDGLDARQLETVRFETIMLSDQELEDKFKYTGIQSPL--------FEEEFSRLKK 903
Query: 933 LRDVFDAEVQKLEADRY-QLATEIATSGDSSWPLPVNLKRLIWNA--QKTFKVDP-RRPS 988
RD + +E + QL T+I +PVN+ ++ N T V P S
Sbjct: 904 DRDKYRQIFLNIENFNFSQLLTDIR-------QVPVNVASIVKNILLSSTSGVLPFDEKS 956
Query: 989 DMHPMEVVEA---------VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKR 1039
+ +V+ ++ +QERL + P+ V ++ A+L +L+R A+ +
Sbjct: 957 ILQKYTMVKTFCKNLPYVFINNIQERL-----QTPIPVYLKRAASL-MRMLIRIELATVK 1010
Query: 1040 VLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1099
L +T E ++ I ++ QSL+ GE +G +AAQS+ EP TQ L++ H +
Sbjct: 1011 TLN---ITCEQMSAILDLIRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDSHHRSVAG 1067
Query: 1100 AKNVTLGVPRLREIINVAKKIKTPSLSVFL----KPGVNSTKERAKNVQCALEYTTLRSV 1155
N + G+ R +EI + AK ++ S L P V + K A+ + ++E T +
Sbjct: 1068 GTNKS-GIVRPQEIFS-AKPVEAEQSSEMLLRLKNPEVETNKTYAQEIANSIELITFERL 1125
Query: 1156 TEATEVWYD------PDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMM 1209
+ Y+ + M DVE++ + E PE I+ W +R+ELN+ M
Sbjct: 1126 ILQWHLLYETYSSTKKNVMYPDFASDVEWMTDFLENHPLLQPPEDIANWCIRLELNKTTM 1185
Query: 1210 VDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI-MNDEAPKGELNDESAEDDV 1268
+ K +S+ ++ + + + ++ A + + IRI + + A + N A D+
Sbjct: 1186 ILKSISLESIINSLRAKHPNSYIMHSVENTASGIPIIIRIYLRESAFRRSTNTRMATDE- 1244
Query: 1269 FLKKIESNMLTEM---ALRGV------------------------------------NLL 1289
KI NM+ ++ +RG+ N+
Sbjct: 1245 ---KIAVNMVDKLLNSTIRGIPGIKNANVVKLMRHRVDAQGKLARLDNIYAIKTNGTNIF 1301
Query: 1290 AVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDT 1349
M +++D S+ + + +E+ GIEA R+ ++ E+R V+ G N+RHL + D
Sbjct: 1302 GAMLDDNIDPYTIVSSSIGDTMELYGIEAARQKIISEIRTVMGDKGP--NHRHLLMYADL 1359
Query: 1350 MTYRGHLMAITRHGIN-RNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQL 1408
MT G + ++ + G+N R + ++R + V +L DAAV + + + G+ ++G +
Sbjct: 1360 MTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAVDSAVNPIYGIAAPTLMGSV 1419
Query: 1409 APIGT 1413
IGT
Sbjct: 1420 PRIGT 1424
>sp|P0C988|RPB1_ASFWA Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Warthog/Namibia/Wart80/1980)
GN=War-109 PE=3 SV=1
Length = 1450
Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust.
Identities = 390/1505 (25%), Positives = 674/1505 (44%), Gaps = 184/1505 (12%)
Query: 10 AEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
A A++ VQF I ++ ++ V+++ E P GG+ D R+GT D KC TC
Sbjct: 3 AGYAEIAAVQFNIAGDNDHKRQGVMEVTISNLFEGTLPAEGGIYDARMGTTDHHYKCITC 62
Query: 70 TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRN 129
+ +C GH G L++ P+ F+ + +R +C NC + D LK
Sbjct: 63 SHQRKQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNCGAPIVD---------LKRYE 113
Query: 130 PKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEY 189
R K++++A ++T+ G + V C A PK+ + +
Sbjct: 114 HLIRPKRLIEAASSQTE---GKQCYV---------------CKAVHPKIIKDSEDYFTFW 155
Query: 190 KAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL 249
Q+ K D L + + + R++ + LG K + P+ ++L+ +
Sbjct: 156 VDQQGKIDK-------------LYPQIIREIFSRVTYDTVVKLG-RSKNSHPEKLVLKAI 201
Query: 250 PIPPPPVRPS------------DDLTHQLAMIIRHN----ENLRRQERNGAPAHIISEFA 293
IPP +RP D+ + + ++R N ++L+ P +I
Sbjct: 202 QIPPISIRPGIRLGIGSGPQSFHDINNVIQYLVRKNLLIPKDLQIVRGQKIPLNIDRNLQ 261
Query: 294 QLLQFHIATYFDN------ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+ Q + D+ + R RP SI RL KEGRIR +L+G +V
Sbjct: 262 TIQQLYYNFLLDSVSTTATQGGTGKRGIVMGARPAPSIMRRLPRKEGRIRKSLLGSQVWS 321
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
+R+ I + +++D++G P S A L ETV YNI RL G PG +
Sbjct: 322 ISRSTICGNSDLHLDEVGYPISFARTLQVAETVQHYNINRLMPYFLNGKRQYPGCSRVYK 381
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM- 466
I D+ LK+ D LE+G + R + GD FNRQPSL + SI HRI ++
Sbjct: 382 QITQSVH--DIEGLKQ--DFRLEVGDILYRDVVTGDVAFFNRQPSLERSSIGVHRIVVLE 437
Query: 467 --PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 524
STF++N+S + YNADFDGD+MN+ VP S +R E L V +S +S+ PV
Sbjct: 438 NPKISTFQMNVSACAWYNADFDGDQMNLWVPWSVMSRVEAELLCSVRNWFISTKSSGPVN 497
Query: 525 GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTIL---KPRPLWTGKQVF 581
G VQD+ +G +T+ +T + K+V MN L F P P L GK V
Sbjct: 498 GQVQDSTVGSFLLTRTNTPMGKNV-MNKLHAMGLFQTTQTDPPCFANYSPTDLLDGKSVV 556
Query: 582 NLIIPKQ-INLFRTAAWHADNDKGIL--TAGDTLVRIEKGELLSGTLCKKTLGT-STGSL 637
++++ + IN R W+++ + D +I GEL+ G L KK +G S+G +
Sbjct: 557 SMLLRQTPINYQRAPTWYSEVYAPYMHYNKQDISTQIRNGELIEGVLDKKAVGAGSSGGI 616
Query: 638 IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNN 697
H+I GP A K + TQ L ++ F++ D + + + + + I++
Sbjct: 617 YHLISRRYGPQQALKMIFATQQLALNYVRNAGFTVSTADMLLTPEAHQEVQEIINELLLE 676
Query: 698 VKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR--DEAGSSAQKSLS-ESNNLKAM 754
+ + + + P G T + +E LN + D S++ E+N L M
Sbjct: 677 SEEINNRLLHGDIMPPIGLTTHDFYE---KLQLNALKFPDRILKPIMNSINPETNGLFQM 733
Query: 755 VTAGSKGSFINISQMTACVGQQNVEGKRI--PFGFVDRTLPHFTKDDYGPESRGFVENSY 812
V G+KGS N+ + A +GQ + +RI F F RTL ++ + ++ GF+ NSY
Sbjct: 734 VATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSF-GRTLVYYPRFALEAQAYGFICNSY 792
Query: 813 LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 872
+ GLT EF F M GR LI+ A+ TS TGY R+ + ++ +V Y V ++
Sbjct: 793 IAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFGLQSCIVDYYRRVSID-TRLV 851
Query: 873 QFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKE 932
Q LYGEDG+D+ +E+ +++ + E + F++ + + ++ +K+
Sbjct: 852 QQLYGEDGLDARQLETVRFETIMLSDQELEDKFKYTGIQSPL--------FEEEFSRLKK 903
Query: 933 LRDVFDAEVQKLEADRY-QLATEIATSGDSSWPLPVNLKRLIWN-----AQKTFKVDPRR 986
RD + +E + QL T++ +PVN+ ++ N A D +
Sbjct: 904 DRDKYRQIFLNVENFNFSQLLTDVR-------QVPVNVASIVKNILLSSASGVLPFDEKT 956
Query: 987 PSDMHPMEVVEA-------VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKR 1039
+ M ++ +QERL + P+ V ++ A+L +L+R A+ +
Sbjct: 957 ILQKYTMVKTFCKNLPYVFINNIQERL-----QTPIPVYLKRAASL-MRMLIRIELATVK 1010
Query: 1040 VLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1099
L +T E ++ I ++ QSL+ GE +G +AAQS+ EP TQ L++ H +
Sbjct: 1011 TLN---ITCEQMSAILDLIRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDSHHRSVAG 1067
Query: 1100 AKNVTLGVPRLREIINVAKKIKTPSLSVFL----KPGVNSTKERAKNVQCALEYTTLRSV 1155
N + G+ R +EI + AK ++ S L P V + K A+ + ++E T +
Sbjct: 1068 GTNKS-GIVRPQEIFS-AKPVEAEQSSEMLLRLKNPEVETNKTYAQEIANSIELITFERL 1125
Query: 1156 TEATEVWYD------PDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMM 1209
+ Y+ + M DVE++ + E PE I+ W +R+ELN+ M
Sbjct: 1126 ILQWHLLYETYSSTKKNVMYPDFASDVEWMTDFLENHPLLQPPEDIANWCIRLELNKTTM 1185
Query: 1210 VDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI-MNDEAPKGELNDESAEDDV 1268
+ K +S+ ++ + + + ++ A + + IRI + + A + N A D+
Sbjct: 1186 ILKSISLESIINSLRAKHPNTYIMHSVENTASGIPIIIRIYLRESAFRRSTNTRMATDE- 1244
Query: 1269 FLKKIESNMLTEM---ALRGV------------------------------------NLL 1289
KI N++ ++ +RG+ N+
Sbjct: 1245 ---KIAVNVVDKLLNSTIRGIPGIKNANVVKLMRHRVDAQGKLVRLDNIYAIKTNGTNIF 1301
Query: 1290 AVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDT 1349
M +++D S+ + + +E+ GIEA R+ ++ E+R V+ G N+RHL + D
Sbjct: 1302 GAMLDDNIDPYTIVSSSIGDTMELYGIEAARQKIISEIRTVMGDKGP--NHRHLLMYADL 1359
Query: 1350 MTYRGHLMAITRHGIN-RNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQL 1408
MT G + ++ + G+N R + ++R + V +L DAAV + + + G+ ++G +
Sbjct: 1360 MTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAVDSAVNPIYGIAAPTLMGSV 1419
Query: 1409 APIGT 1413
IGT
Sbjct: 1420 PRIGT 1424
>sp|P0C989|RPB1_ASFK5 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Pig/Kenya/KEN-50/1950)
GN=Ken-111 PE=3 SV=1
Length = 1450
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 391/1505 (25%), Positives = 675/1505 (44%), Gaps = 184/1505 (12%)
Query: 10 AEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
A A++ VQF I ++ ++ V+++ E P GG+ D R+GT D KC TC
Sbjct: 3 AGYAEIAAVQFNIAGDNDHKRQGVMEVTISNLFEGTLPAEGGIYDARMGTTDHHYKCITC 62
Query: 70 TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRN 129
+ +C GH G L++ P+ F+ + +R +C NC + D LK
Sbjct: 63 SHQRKQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNCGAPIVD---------LKRYE 113
Query: 130 PKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEY 189
R K++ +A ++T+ G + V C PK+ + +
Sbjct: 114 HLIRPKRLAEAASSQTE---GKQCYV---------------CKVIHPKIIKDSEDYFTFW 155
Query: 190 KAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL 249
Q+ K D L + + + R++ + LG K + P+ ++L+ +
Sbjct: 156 VDQQGKIDK-------------LYPQIIREIFSRVTYDTVVKLG-RSKNSHPEKLVLKAI 201
Query: 250 PIPPPPVRPS------------DDLTHQLAMIIRHN----ENLRRQERNGAPAHIISEFA 293
IPP +RP D+ + + I+R N ++L+ P ++
Sbjct: 202 QIPPISIRPGIRLGIGSGPQSFHDINNVIQYIVRKNLLIPKDLQIVRGQKIPLNVDRNLQ 261
Query: 294 QLLQFHIATYFDN------ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+ Q + D+ + R RP SI RL KEGRIR +L+G +V
Sbjct: 262 TIQQLYYNFLLDSVSTTATQGGTGKRGIVMGARPAPSIMRRLPRKEGRIRKSLLGSQVWS 321
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
+R+ I + +++D++G P S A L ETV YNI RL G PG +
Sbjct: 322 ISRSTICGNSDLHLDEVGYPISFARTLQVAETVQHYNINRLMPYFLNGKRQYPGCSRVYK 381
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM- 466
I D+ LK+ D LE+G + R + GD FNRQPSL + SI HRI ++
Sbjct: 382 QITQSVH--DIEGLKQ--DFRLEVGDILYRDVVTGDVAFFNRQPSLERSSIGVHRIVVLE 437
Query: 467 --PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 524
STF++N+S + YNADFDGD+MN+ VP S +R E L V +S +S+ PV
Sbjct: 438 NPKISTFQMNVSACAWYNADFDGDQMNLWVPWSVMSRVEAELLCSVRNWFISTKSSGPVN 497
Query: 525 GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTIL---KPRPLWTGKQVF 581
G VQD+ +G +T+ +T + K+V MN L F P P L GK V
Sbjct: 498 GQVQDSTVGSFLLTRTNTPMGKNV-MNKLHAMGLFQTTQTDPPCFANYSPTDLLDGKLVV 556
Query: 582 NLIIPKQ-INLFRTAAWHADNDKGIL--TAGDTLVRIEKGELLSGTLCKKTLGT-STGSL 637
++++ + IN R W+++ + D +I GEL+ G L KK +G S+G +
Sbjct: 557 SMLLKQTPINYQRAPTWYSEVYAPYMHYNKQDISTQIRNGELIEGVLDKKAVGAGSSGGI 616
Query: 638 IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNN 697
H+I GP A K + TQ L ++ F++ D + + + + + I++
Sbjct: 617 YHLISRRYGPQQALKMIFATQQLALNYVRNAGFTVSTADMLLTPEAHQEVQEIINELLLE 676
Query: 698 VKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR--DEAGSSAQKSLS-ESNNLKAM 754
+ + + + P G T + +E LN + D S++ E+N L M
Sbjct: 677 SEEINNRLLHGDIMPPIGLTTHDFYE---KLQLNALKFPDRILKPIMNSINPETNGLFQM 733
Query: 755 VTAGSKGSFINISQMTACVGQQNVEGKRI--PFGFVDRTLPHFTKDDYGPESRGFVENSY 812
V G+KGS N+ + A +GQ + +RI F F RTL ++ + ++ GF+ NSY
Sbjct: 734 VATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSF-GRTLVYYPRFALEAQAYGFICNSY 792
Query: 813 LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 872
+ GLT EF F M GR LI+ A+ TS TGY R+ + ++ +V Y V ++
Sbjct: 793 IAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFGLQSCIVDYYRRVSID-TRLV 851
Query: 873 QFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKE 932
Q LYGEDG+D+ +E+ +++ + E + F++ + + ++ +K+
Sbjct: 852 QQLYGEDGLDARQLETVRFETIMLSDQELEDKFKYTGIQSPL--------FEEEFSRLKK 903
Query: 933 LRDVFDAEVQKLEADRY-QLATEIATSGDSSWPLPVNLKRLIWNA--QKTFKVDP-RRPS 988
RD + +E + QL T++ +PVN+ ++ N T V P S
Sbjct: 904 DRDKYRQIFLNIENFNFSQLLTDVR-------QVPVNVASIVKNILLSSTSGVLPFDEKS 956
Query: 989 DMHPMEVVEA---------VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKR 1039
+ +V+ ++ +QERL + P+ V ++ A+L IL+R A+ +
Sbjct: 957 ILQKYTMVKTFCKNLPYVFINNIQERL-----QTPIPVYLKRAASL-MRILIRIELATVK 1010
Query: 1040 VLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1099
L +T E ++ I ++ QSL+ GE +G +AAQS+ EP TQ L++ H +
Sbjct: 1011 TLN---ITCEQMSAILDLIRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDSHHRSVAG 1067
Query: 1100 AKNVTLGVPRLREIINVAKKIKTPSLSVFL----KPGVNSTKERAKNVQCALEYTTLRSV 1155
N + G+ R +EI + AK ++ S L P V + K A+ + ++E T +
Sbjct: 1068 GTNKS-GIVRPQEIFS-AKPVEAEQSSEMLLRLKNPEVETNKTYAQEIANSIELITFERL 1125
Query: 1156 TEATEVWYD------PDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMM 1209
+ Y+ + M DVE++ + E PE I+ W +R+ELN+ M
Sbjct: 1126 ILQWHLLYETYSSTKKNVMYPDFASDVEWMTDFLENHPLLQPPEDIANWCIRLELNKTTM 1185
Query: 1210 VDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI-MNDEAPKGELNDESAEDDV 1268
+ K +S+ ++ + + + ++ A + + IRI + + A + N A D+
Sbjct: 1186 ILKSISLESIVNSLRAKHPNTYIMHSVENTASGIPIIIRIYLRESAFRRSTNTRMATDE- 1244
Query: 1269 FLKKIESNMLTEM---ALRGV------------------------------------NLL 1289
KI N++ ++ +RG+ N+
Sbjct: 1245 ---KIAVNLVDKLLNSTIRGIPGIKNANVVKLMRHRVDAQGKLVRLDNIYAIKTNGTNIF 1301
Query: 1290 AVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDT 1349
M +++D S+ + + +E+ GIEA R+ ++ E+R V+ G N+RHL + D
Sbjct: 1302 GAMLDDNIDPYTIVSSSIGDTMELYGIEAARQKIISEIRTVMGDKGP--NHRHLLMYADL 1359
Query: 1350 MTYRGHLMAITRHGIN-RNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQL 1408
MT G + ++ + G+N R + ++R + V +L DAA+ + + + G+ ++G +
Sbjct: 1360 MTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAIDSAVNPIYGIAAPTLMGSV 1419
Query: 1409 APIGT 1413
IGT
Sbjct: 1420 PRIGT 1424
>sp|P0C987|RPB1_ASFP4 Probable DNA-directed RNA polymerase subunit 1 homolog OS=African
swine fever virus (isolate Tick/South Africa/Pretoriuskop
Pr4/1996) GN=Pret-111 PE=3 SV=1
Length = 1450
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 390/1505 (25%), Positives = 675/1505 (44%), Gaps = 184/1505 (12%)
Query: 10 AEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTIDRKMKCETC 69
A A++ VQF I ++ ++ V+++ E P GG+ D R+GT D KC TC
Sbjct: 3 AGYAEIAAVQFNIAGDNDHKRQGVMEVTISNLFEGTLPAEGGIYDARMGTTDHHYKCITC 62
Query: 70 TANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRN 129
+ +C GH G L++ P+ F+ + +R +C NC + D LK
Sbjct: 63 SHQRKQCMGHPGILQMHAPVLQPLFIAEIRRWLRVICLNCGAPIVD---------LKRYE 113
Query: 130 PKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEY 189
R K++++A ++T+ G + V C PK+ + +
Sbjct: 114 HLIRPKRLIEAASSQTE---GKQCYV---------------CKTVHPKIIKDSEDYFTFW 155
Query: 190 KAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL 249
Q+ K D L + + + R++ + LG K + P+ ++L+ +
Sbjct: 156 VDQQGKIDK-------------LYPQIIREIFSRVTYDTVVKLG-RSKNSHPEKLVLKAI 201
Query: 250 PIPPPPVRPS------------DDLTHQLAMIIRHN----ENLRRQERNGAPAHIISEFA 293
IPP +RP D+ + + ++R N ++L+ P +I
Sbjct: 202 QIPPISIRPGIRLGIGSGPQSFHDINNVIQYLVRKNLLIPKDLQIVRGQKIPLNIDRNLQ 261
Query: 294 QLLQFHIATYFDN------ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 347
+ Q + D+ + R RP SI RL KEGRIR +L+G +V
Sbjct: 262 TIQQLYYNFLLDSVSTTATQGGTGKRGIVMGARPAPSIMRRLPRKEGRIRKSLLGSQVWS 321
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
+R+ I + +++D++G P S A L ETV YNI RL G PG +
Sbjct: 322 ISRSTICGNSDLHLDEVGYPISFARTLQVAETVQHYNINRLMPYFLNGKRQYPGCSRVYK 381
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM- 466
I D+ LK+ D LE+G + R + GD FNRQPSL + SI HRI ++
Sbjct: 382 QITQSVH--DIEGLKQ--DFRLEVGDILYRDVVTGDVAFFNRQPSLERSSIGVHRIVVLE 437
Query: 467 --PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVM 524
STF++N+S + YNADFDGD+MN+ VP S +R E L V +S +S+ PV
Sbjct: 438 NPKISTFQMNVSACAWYNADFDGDQMNLWVPWSVMSRVEAELLCSVRNWFISTKSSGPVN 497
Query: 525 GIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTIL---KPRPLWTGKQVF 581
G VQD+ +G +T+ +T + K+V MN L F P P L GK V
Sbjct: 498 GQVQDSTVGSFLLTRTNTPMGKNV-MNKLHAMGLFQTTQTDPPCFANYSPTDLLDGKSVV 556
Query: 582 NLIIPKQ-INLFRTAAWHADNDKGIL--TAGDTLVRIEKGELLSGTLCKKTLGT-STGSL 637
++++ + IN R W+++ + D +I GEL+ G L KK +G S+G +
Sbjct: 557 SMLLRQTPINYQRAPTWYSEVYAPYMHYNKQDISTQIRNGELIEGVLDKKAVGAGSSGGI 616
Query: 638 IHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNN 697
H+I GP A K + TQ L ++ F++ D + + + + + I++
Sbjct: 617 YHLISRRYGPQQALKMIFATQQLALNYVRNAGFTVSTADMLLTPEAHQEVQEIINELLLE 676
Query: 698 VKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTAR--DEAGSSAQKSLS-ESNNLKAM 754
+ + + + P G T + +E K+ LN + D S++ E+N L M
Sbjct: 677 SEEINNRLLHGDIMPPIGLTTHDFYE-KLQ--LNALKFPDRILKPIMNSINPETNGLFQM 733
Query: 755 VTAGSKGSFINISQMTACVGQQNVEGKRI--PFGFVDRTLPHFTKDDYGPESRGFVENSY 812
V G+KGS N+ + A +GQ + +RI F F RTL ++ + ++ GF+ NSY
Sbjct: 734 VATGAKGSNPNMIHIMAGIGQIEINTQRIQPQFSF-GRTLVYYPRFALEAQAYGFICNSY 792
Query: 813 LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 872
+ GLT EF F M GR LI+ A+ TS TGY R+ + ++ +V Y V ++
Sbjct: 793 IAGLTSPEFIFGEMNGRFDLINKALSTSSTGYANRKAIFGLQSCIVDYYRRVSID-TRLV 851
Query: 873 QFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKE 932
Q LYGEDG+D+ +E+ +++ + E + F++ + + ++ +K+
Sbjct: 852 QQLYGEDGLDARQLETVRFETIMLSDQELEDKFKYTGIQSPL--------FEEEFSRLKK 903
Query: 933 LRDVFDAEVQKLEADRY-QLATEIATSGDSSWPLPVNLKRLIWN-----AQKTFKVDPRR 986
RD + +E + QL T++ +PVN+ ++ N A D +
Sbjct: 904 DRDKYRQIFLNIENFNFSQLLTDVR-------QVPVNVASIVKNILLSSATGVLPFDEKT 956
Query: 987 PSDMHPMEVVEA-------VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKR 1039
+ M ++ +QERL + P+ V ++ A+L +L+R A+ +
Sbjct: 957 ILQKYTMVKTFCKNLPYVFINNIQERL-----QTPIPVYLKRAASL-MRMLIRIELATVK 1010
Query: 1040 VLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1099
L +T E ++ I ++ QSL+ GE +G +AAQS+ EP TQ L++ H +
Sbjct: 1011 TLN---ITCEQMSAILDLIRLQYTQSLINYGEAVGILAAQSVSEPLTQYMLDSHHRSVAG 1067
Query: 1100 AKNVTLGVPRLREIINVAKKIKTPSLSVFL----KPGVNSTKERAKNVQCALEYTTLRSV 1155
N + G+ R +EI + AK ++ S L P V + K A+ + ++E T +
Sbjct: 1068 GTNKS-GIVRPQEIFS-AKPVEAEQSSEMLLRLKNPEVETNKTYAQEIANSIELITFERL 1125
Query: 1156 TEATEVWYD------PDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMM 1209
+ Y+ + M DVE++ + E PE I+ W +R+ELN+ M
Sbjct: 1126 ILQWHLLYETYSSTKKNVMYPDFASDVEWMTDFLENHPLLQPPEDIANWCIRLELNKTTM 1185
Query: 1210 VDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRI-MNDEAPKGELNDESAEDDV 1268
+ K +S+ ++ + + + ++ A + + IRI + + A + N A D+
Sbjct: 1186 ILKSISLESIINSLRAKHPNTYIMHSVENTASGIPIIIRIYLRESAFRRSTNTRMATDE- 1244
Query: 1269 FLKKIESNMLTEM---ALRGV------------------------------------NLL 1289
KI N++ ++ +RG+ N+
Sbjct: 1245 ---KIAVNVVDKLLNSTIRGIPGIKNANVVKLMRHRVDAQGKLVRLDNIYAIKTNGTNIF 1301
Query: 1290 AVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDT 1349
M +++D S+ + + +E+ GIEA R+ ++ E+R V+ G N+RHL + D
Sbjct: 1302 GAMLDDNIDPYTIVSSSIGDTMELYGIEAARQKIISEIRTVMGDKGP--NHRHLLMYADL 1359
Query: 1350 MTYRGHLMAITRHGIN-RNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQL 1408
MT G + ++ + G+N R + ++R + V +L DAAV + + + G+ ++G +
Sbjct: 1360 MTRTGQVTSLEKAGLNAREPSNVLLRMALSSPVQVLTDAAVDSAVNPIYGIAAPTLMGSV 1419
Query: 1409 APIGT 1413
IGT
Sbjct: 1420 PRIGT 1424
>sp|O54889|RPA1_RAT DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus
GN=Polr1a PE=1 SV=1
Length = 1716
Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust.
Identities = 313/985 (31%), Positives = 485/985 (49%), Gaps = 117/985 (11%)
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQ H+ FD+++ R I L+ KEG R ++MGKRVD++AR+VI P
Sbjct: 401 LQSHVNIVFDSDMDKLMLEKYPGIRQI------LEKKEGLFRKHMMGKRVDYAARSVICP 454
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
D IN +++G+P A LTYP+ VTP+N++ L++ V GP+ PG A +I +DG R
Sbjct: 455 DMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG---ASMVINEDGSR 511
Query: 416 LDLRYLKKSSDHHLE-------------LGYKVE-RHLNDGDFVLFNRQPSLHKMSIMGH 461
L + + + G KV RH+ +GD +L NRQP+LH+ SI H
Sbjct: 512 TALSAVDATQREAVAKQLLTPSTGIPKPQGAKVVCRHVKNGDILLLNRQPTLHRPSIQAH 571
Query: 462 RIKIMPY-STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
R I+P RL+ + YNADFDGDEMN H PQS RAE L + + P+
Sbjct: 572 RAHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDG 631
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM-WWEDFDGKVPQ--PTILKPRPLWTG 577
+P+ G++QD ++ +T R F ++ +M ++ D G+V P ILKP PLWTG
Sbjct: 632 QPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTG 691
Query: 578 KQVFNL----IIPKQ---INLFRTA-----AWHADNDKGI-----LTAGDTLVRIEKGEL 620
KQV + IIP+ +NL A AW + + + + ++ V I +GEL
Sbjct: 692 KQVVSTLLINIIPEDYTPLNLTGKAKIGSKAWVKEKPRPVPDFDPDSMCESQVIIREGEL 751
Query: 621 LSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL-LQNAFSIGIGDTI- 678
L G L K G+S L+H +E G + + + L L +L L F++G+ D +
Sbjct: 752 LCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILV 811
Query: 679 ---ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR-------------TMME-S 721
AD I ++ V+ + + S + G+ M++
Sbjct: 812 KPNADVMRQRIIEESTQCGPRAVRAALNLPEAASCDEIQGKWQDAIWRKDQRDFNMIDMK 871
Query: 722 FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
F+ +VN N NNL+ MV +G+KGS +N Q++ +GQ +EG+
Sbjct: 872 FKEEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGR 931
Query: 782 RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
R P ++LP F ++ P + GFV +L G+ P EFFFH M GREGL+DTAVKTS
Sbjct: 932 RPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSR 991
Query: 842 TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEF 901
+GY+QR ++K +E ++++YD TVR+S G V+QFLYGEDG L + K++F
Sbjct: 992 SGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDG-------------LDIPKTQF 1038
Query: 902 DKAFRFEMDEENWN---PNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQLATEIATS 958
+ +F N+ + L E + K LR + ++ ++ ++ +
Sbjct: 1039 LQPKQFPFLASNYEVIMKSKHLHEVLSRADPQKVLR-----HFRAIKKWHHRHSSALLRK 1093
Query: 959 GDSSWPLPVNLKRLIWNAQKTFKVDP-----RRPSDMHPMEVVEAVDKLQERL---KVVP 1010
G ++ + I A K ++ R P +++ +D+ R + P
Sbjct: 1094 GAF-----LSFSQKIQAAVKALNLEGKTQNGRSPETQQMLQMWHELDEQSRRKYQKRAAP 1148
Query: 1011 GEDP-LSVE------AQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIESRFL 1063
DP LSV A + T I S + + K H + + + + ++ ++
Sbjct: 1149 CPDPSLSVWRPDIHFASVSETFEKKIDDYSQEWAAQAEKSHNRSELSLDRLRTLLQLKWQ 1208
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KKIKT 1122
+SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ VA IKT
Sbjct: 1209 RSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANIKT 1268
Query: 1123 PSLSVFLKPGVNSTK--ERAKNVQCALEYTTLRSVTEATEVWYDPDPMGT------IIEE 1174
P +SV P N+ K R K+++ L L V + ++ + MG + E
Sbjct: 1269 PMMSV---PVFNTKKALRRVKSLKKQLTRVCLGEVLQKVDI-QESFCMGEKQNKFRVYEL 1324
Query: 1175 DVEFVKSYYEMPDEDIAPEKISPWL 1199
+F+ Y ++ + PE I ++
Sbjct: 1325 RFQFLPHAYYQQEKCLRPEDILHFM 1349
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 1285 GVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
G+NL + + +V D RR SN + + GIEA R + E++ V + G V+ RHL
Sbjct: 1578 GINLPELFKYSEVLDLRRLYSNDIHAVANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHL 1637
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
+++ D M + G + R GI ++ + P+ + +FE + L A + D L+ + +
Sbjct: 1638 SLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACL 1696
Query: 1404 MLGQLAPIGTG 1414
++G++ GTG
Sbjct: 1697 VVGKVVKGGTG 1707
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTAN 72
+++ + FG+ S +E++++SV I + + G P GL D LG D K C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYVDSLGNPSADGLYDLALGPADSKEVCSTCVQD 70
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI 112
C GH GH++L +++ + ++R C NC +
Sbjct: 71 FNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHML 110
>sp|P15398|RPA1_SCHPO DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2
Length = 1689
Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust.
Identities = 304/992 (30%), Positives = 475/992 (47%), Gaps = 174/992 (17%)
Query: 239 ARPDWMILQVLPIPPPPVRPSDDLTHQLAMIIRHNENLRR-------------------- 278
A D LQ + +PP RP+ + ++ I+ NE L R
Sbjct: 355 ASADMFFLQNIAVPPTRFRPASKMGDEVHENIQ-NELLTRILQSSIQIASLSKDSTVEVN 413
Query: 279 -------QERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRP-IKSICSRLK 330
+ R+ A +I+ F QL Q + + D+ R+ P IK I L+
Sbjct: 414 PDEKEGLERRSRAFELLINAFVQL-QHDVNSLIDSNRNPSSGGQSRTVPPGIKQI---LE 469
Query: 331 AKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKE 390
KEG R ++MGKRV+++AR+VI+PDP I +++GVP A LTYPE VT YN ++
Sbjct: 470 KKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRN 529
Query: 391 LVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLK----------------------KSSDHH 428
V GPH PG A +I +DG + L L S
Sbjct: 530 AVINGPHKWPG---ASHIQNEDGTLISLMPLTIEQRTALANQLLTPQSNLISSPYSYSRL 586
Query: 429 LELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADFDG 487
+ KV RH+ +GD ++ NRQP+LHK S+M H+ +I+P T R++ + + YNADFDG
Sbjct: 587 INTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDG 646
Query: 488 DEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
DEMNMH PQS R+E + + P S P+ G++QD ++ +T +DTF +D
Sbjct: 647 DEMNMHFPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRD 706
Query: 548 VFMNILMWWEDFD-----GKVPQ--PTILKPRPLWTGKQVFNLIIPK-------QINLFR 593
+ +L D G++ P I +P WTGKQ+ + ++ +NL
Sbjct: 707 EYQQLLFQALKPDETGMYGRIKTLPPAIQRPGIYWTGKQIISSVLLNLKPSDRPGLNLKS 766
Query: 594 TAA-----WHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPD 648
A W D+++G V + GELL G L K + G S L+H + E GPD
Sbjct: 767 KAKVPGKYWSPDSEEGS-------VLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPD 819
Query: 649 AARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKT---------------METINDTISK 693
A + L L + F+ + D D + +E ++ +
Sbjct: 820 IAGRLLSVLSRLFTAYAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGL 879
Query: 694 AKNN-VKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLK 752
+ ++ + L ++ + E + + + + K+N + ++ ++ + N+++
Sbjct: 880 STDSPIALLNANLEEVYRDDEKLQGLDAAMKGKMNGLTSSIINKCIPDGLLTKFPYNHMQ 939
Query: 753 AMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSY 812
M +G+KGS +N+SQ++ +GQQ +EG+R+P ++LP F + +S GF+ + +
Sbjct: 940 TMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGGFIASRF 999
Query: 813 LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVI 872
L G+ PQE++FH M GREGLIDTAVKTS +GY+QR L+K +E + V+YD TVR+S G ++
Sbjct: 1000 LTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYDHTVRDSDGSIV 1059
Query: 873 QFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKE 932
QF YGED +LD K K +FE +N+ ++Q+Y +K
Sbjct: 1060 QFHYGED----------SLDVTKQKH-----LTQFEFSAKNYKS--LIQKY-----KVKS 1097
Query: 933 LRDVFDAEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDP---RRPSD 989
+ D+E A + +K +K DP + P
Sbjct: 1098 VLSAVDSETASSYAKK--------------------------ALKKPYKYDPVLDKYPPS 1131
Query: 990 MHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTRE 1049
+ V E K Q + ++P + A K + L + L
Sbjct: 1132 RYLGSVSE---KFQRAVDEYTQKNPDKLIASKKES---------------KLDDSLLNES 1173
Query: 1050 AFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPR 1109
F+ ++ + R+ QSLV PGE +G +A+QSIGEP+TQMTLNTFH+AG AKNVTLG+PR
Sbjct: 1174 KFKALM---QLRYQQSLVDPGESVGVLASQSIGEPSTQMTLNTFHFAGFGAKNVTLGIPR 1230
Query: 1110 LREIINVAK-KIKTPSLSVFLKPGVNSTKERA 1140
LREII A I+TP++++ L GV+ + A
Sbjct: 1231 LREIIMTASANIQTPTMTLRLNDGVSDKRASA 1262
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 1285 GVNLLAVM-CHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
GVNL A+ + ++ +N + I+ + G+EA R A++ E+ V G V+ RHL
Sbjct: 1546 GVNLKAIWEFYNEISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHL 1605
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
+++ D MT+ G A R GI N T P + SFE T L +AA+ + D L + +
Sbjct: 1606 SLIADYMTFEGGYKAFNRMGIEYN-TSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRL 1664
Query: 1404 MLGQLAPIGTGDCSLY 1419
++G++ GTG ++
Sbjct: 1665 VVGRVGNFGTGSFDIF 1680
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 13 AKVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTA 71
++++ V+FGI D++ ++SV QI + + P GGL D LG + C TC
Sbjct: 9 SEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLKNSVCATCHL 68
Query: 72 NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI-LADEDDHKFKQALKI 127
+ CPGHFGH+ L P +H F + +++RS C C L+ H F LK+
Sbjct: 69 DERYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRLKL 125
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III subunit RPC1 OS=Plasmodium falciparum
PE=3 SV=1
Length = 2339
Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust.
Identities = 213/504 (42%), Positives = 299/504 (59%), Gaps = 20/504 (3%)
Query: 415 RLDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRL 473
++ L+Y K+ +L +G VERH+ DGD VLFNRQPSLH+MSIM H+ KIM + TFR
Sbjct: 541 KISLKYANKNHVIQNLNIGDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIMDFKTFRF 600
Query: 474 NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLG 533
N V SPYNADFDGDEMN+ VPQ+ E RAE L LM V +++P++ ++ + QD L
Sbjct: 601 NECVCSPYNADFDGDEMNLDVPQTEEARAEALYLMNVKHNLITPKNGEVIIALTQDFLSA 660
Query: 534 CRKITKRDTFIEKDVFMNILMWWED--FDGKVPQPTILKPRPLWTGKQVFNLIIP----- 586
IT +DTF+++D F + ++ D ++P P ILKP+ LWTGKQ+ +++I
Sbjct: 661 SYIITNKDTFLDRDTFCLLCSYFSDASLYIELPIPAILKPKELWTGKQLISVLIKPNKKE 720
Query: 587 KQINLFRTAAWHADN---DKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWE 643
I F N D L D+ V K EL+ G+L KK LG+S L + +
Sbjct: 721 NTIINFEIQEREYSNKFGDLKHLCLNDSYVCFYKSELICGSLGKKVLGSSKYGLFYYLIH 780
Query: 644 EVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIK 703
A K + L + + +IGI D E D + K V N I
Sbjct: 781 HNSSHIALKIMNRLSKLTSRYFSNKGMTIGIDDVRPSQTLTEKKKDLLLKGYEKVNNEII 840
Query: 704 QAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSF 763
+K ++ +PG T+ E+ E KV +L+ R++AG + + L N M +G+KG+
Sbjct: 841 LYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCNQYLHYLNKPLIMFNSGAKGAL 900
Query: 764 INISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 823
INI+QM ACVGQQNV G+RI GF++RTLPHF ESRGFV+NS+ GL+P EFFF
Sbjct: 901 INIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDSESRGFVQNSFYTGLSPTEFFF 960
Query: 824 HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDS 883
H M GREGL+DTAVKT+ETGY+QRRL+KA+ED+ + YD +VR+ ++QF+YG+D ++
Sbjct: 961 HTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYSVRSCDKQIVQFIYGDDALNP 1020
Query: 884 VWIESQT--LDSLKMKKSEFDKAF 905
+I++ LD +FDK F
Sbjct: 1021 SYIDNNNTYLD-------QFDKVF 1037
Score = 224 bits (572), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 147/431 (34%), Positives = 223/431 (51%), Gaps = 51/431 (11%)
Query: 1 MDTRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER--GKPKPGGLSDPRLG 58
M RF +++ ++FGI+S ++I + S V+I + E + G P P G+ D +LG
Sbjct: 21 MKKRFVKDIKRNCEIKSIRFGIMSKEDIIKYSEVKIMNREMYKNNSGIPYPYGVLDLKLG 80
Query: 59 TIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
CETC + C GHFG++EL P+FHIG+ K ++ I+ +C CS +L ++
Sbjct: 81 AHKSNSVCETCNKKLINCSGHFGYIELNYPVFHIGYYKYIIHILYCICKYCSSLLLSKEK 140
Query: 119 HKFKQALKIRN------PKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCG 172
F LK ++ K+ K+IL+ CK KC + G + + +KK
Sbjct: 141 IDFYCNLKKKSTDDSFYKKHLFKRILNNCKKVNKCY------ICG-NPQGVIKK------ 187
Query: 173 AQQPKL-TIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQL 231
+P L +K I + K K + +++ L + VL + K I+ +L
Sbjct: 188 IIKPSLDQFMKLKHILKVKENGK----------MIIKEEDLNSLYVLKLFKNINPYHVKL 237
Query: 232 LGLNPKYARPDWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQER 281
L + P+ +I+ L +PP +RPS DDLT L+ I + N + Q
Sbjct: 238 LNI----ENPEKLIITALLVPPNTIRPSVIIDEHGTAEDDLTCILSEITQLNNTIYNQCT 293
Query: 282 NGAPAHIISEFAQLLQFHIATYFDNELPG--QPRATQRSGRPIKSICSRLKAKEGRIRGN 339
NG + + LQ I + +++ P Q ATQ +P + IC RLK KEGR R N
Sbjct: 294 NGYQTNQFLGNVEFLQLQITRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCN 353
Query: 340 LMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPP 399
L GKRVDFS+RTVI+PDP I+ID++ +P IA+ LTYPETV YNI++LK L++ G +
Sbjct: 354 LSGKRVDFSSRTVISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKW 413
Query: 400 PGKTGAKYIIR 410
P GA YII+
Sbjct: 414 P---GANYIIK 421
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/134 (38%), Positives = 87/134 (64%), Gaps = 6/134 (4%)
Query: 1026 FFNILLRSTFASKR-VLKEHRLT--REAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIG 1082
+FN ++++ S R ++ ++ ++ + ++ I ++ + + PG+ +G ++AQSIG
Sbjct: 1734 YFNYIIKNYDISHRYIIHDYSFINLKQLYLFIFFNI-YKYFKYISTPGDAVGSISAQSIG 1792
Query: 1083 EPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKN 1142
EP TQMTL TFH+AGV++ NVTLGVPR++EIIN + I+TP L++ L+ VN A
Sbjct: 1793 EPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASNSIQTPILNIPLE--VNDNYNFALM 1850
Query: 1143 VQCALEYTTLRSVT 1156
++ LE TT+R +
Sbjct: 1851 MKSKLEKTTIRDIC 1864
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 78/134 (58%)
Query: 1281 MALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNY 1340
+ + G +L V+ E VD + SNH+I + +VLGIEA R +++E++ + ++
Sbjct: 2175 ILVEGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSIDIDI 2234
Query: 1341 RHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVT 1400
RH+ +L D M + G ++ I R GI + +M SFEET + L ++ F D + ++
Sbjct: 2235 RHIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEINNIS 2294
Query: 1401 ENIMLGQLAPIGTG 1414
E+I++G+ PIGTG
Sbjct: 2295 ESIIVGKNIPIGTG 2308
>sp|Q58445|RPOA1_METJA DNA-directed RNA polymerase subunit A' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoA1 PE=3 SV=2
Length = 1341
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 224/501 (44%), Positives = 298/501 (59%), Gaps = 64/501 (12%)
Query: 9 PAEVAKVRMVQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKCE 67
P E+ ++ FG+LSPD IRQMSV +I +T E G P GGL D RLG ID + C+
Sbjct: 7 PKEIGEI---MFGLLSPDYIRQMSVAKIVTPDTYDEDGYPIDGGLMDTRLGVIDPGLVCK 63
Query: 68 TCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKI 127
TC + ECPGHFGH+ELAKP+ HIGF KT+ I+++VC +C ++ E
Sbjct: 64 TCGGRIGECPGHFGHIELAKPVIHIGFAKTIYKILKAVCPHCGRVAISE----------- 112
Query: 128 RNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKG-GCGAQQPKLTIEGMKMI 186
+ K+IL+ + K + +GG++ +V + +E K CG + K I+ K
Sbjct: 113 ----TKRKEILEKME-KLERDGGNKWEVCEEVYKEASKVTICPHCG--EIKYDIKFEKPT 165
Query: 187 AEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMIL 246
Y+ D E+ +TLT V +L++I DEDC LLGLNP+ ARP+WM+L
Sbjct: 166 TYYRI-----DGNEE--------KTLTPSDVREILEKIPDEDCILLGLNPEVARPEWMVL 212
Query: 247 QVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLL 296
VLP+PP VRPS DDLTH+L IIR N L GAP II + LL
Sbjct: 213 TVLPVPPVTVRPSITLETGERSEDDLTHKLVDIIRINNRLEENIEGGAPNLIIEDLWNLL 272
Query: 297 QFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPD 356
Q+H+ TYFDNE PG P A RSGRP+K++ RLK KEGR R NL GKRV+FS+RTVI+PD
Sbjct: 273 QYHVNTYFDNEAPGIPPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNFSSRTVISPD 332
Query: 357 PTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD----D 412
P ++I+++GVP +A LT PE VT YNIER+++L+ G P G Y+IR D
Sbjct: 333 PCLSINEVGVPEVVAKELTVPEKVTKYNIERIRQLLRNGSEKHP---GVNYVIRKMIGRD 389
Query: 413 G--QRLDLRYLKKSSD---HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
G Q ++ + + D ++ G VERHL DGD VL+NRQPSLH+MSIM HR++++P
Sbjct: 390 GTEQEYKVKITESNKDFWAENIREGDIVERHLMDGDIVLYNRQPSLHRMSIMAHRVRVLP 449
Query: 468 YSTFRLNLSVTSPYNADFDGD 488
Y TFR NL V DGD
Sbjct: 450 YRTFRHNLCVC------VDGD 464
Score = 316 bits (809), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 178/435 (40%), Positives = 257/435 (59%), Gaps = 27/435 (6%)
Query: 480 PYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITK 539
PYNADFDGDEMN+HVPQS E RAE LM+V K I+SP+ P++G + D + G +T
Sbjct: 914 PYNADFDGDEMNLHVPQSEEARAEAEALMLVEKHILSPRFGGPIIGAIHDFISGAYLLT- 972
Query: 540 RDTFIEKDVFMNIL--------MWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL 591
+ KD IL +W D KV PL++GK++F+ +PK +NL
Sbjct: 973 -SNYFTKDEATLILRSGGIKDELWEPD---KVENGV-----PLYSGKKIFSKALPKGLNL 1023
Query: 592 FRTA--AWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDA 649
A D K D V I+ GEL+ G + K G G ++H I +E GP+A
Sbjct: 1024 RYKAKICRKCDVCKKEECEYDAYVVIKDGELIKGVIDKNGYGAEAGLILHTIVKEFGPEA 1083
Query: 650 ARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKS 709
RKFL + ++ F+ GI D + ++ I + +A+ VK +I++ +
Sbjct: 1084 GRKFLDSATKMAIRAVMLRGFTTGIDDEDLPEEALKEIEKVLDEAEEKVKEIIEKYERGE 1143
Query: 710 LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 769
LE PG + ES E ++ VL ARD+AG+ A++ L N+ M G++G+ +N++QM
Sbjct: 1144 LELLPGLNLEESREAYISNVLREARDKAGAIAERYLGLDNHAVIMAVTGARGNILNLTQM 1203
Query: 770 TACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 829
AC+GQQ+V GKRI G+ R LPHF K D G S GFV +SY +GL+P EFFFHAMGGR
Sbjct: 1204 AACLGQQSVRGKRIFRGYRGRVLPHFEKGDLGARSHGFVRSSYKKGLSPTEFFFHAMGGR 1263
Query: 830 EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIE-- 887
EGL+D AV+T+++GY+QRRL+ A++D+ ++DGTVR+S G +IQF YGEDG+D + +
Sbjct: 1264 EGLVDQAVRTAQSGYMQRRLINALQDLKTEFDGTVRDSRGIMIQFKYGEDGIDPMLADRG 1323
Query: 888 -----SQTLDSLKMK 897
+ +D +KMK
Sbjct: 1324 KAVNIDRIIDKVKMK 1338
>sp|Q86H36|RPA1_DICDI DNA-directed RNA polymerase I subunit rpa1 OS=Dictyostelium
discoideum GN=polr1a PE=3 SV=1
Length = 1615
Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust.
Identities = 243/706 (34%), Positives = 360/706 (50%), Gaps = 75/706 (10%)
Query: 237 KYARPDWMILQVLPIPPPPVRPSDDL----------THQLAMIIRHNENLRRQERNG-AP 285
K + D + ++V P+ P RP + + +H M+ + N+ +R+ G
Sbjct: 329 KESNVDSLFMRVFPVTPARYRPPNFVNGRRSEHPQNSHYKGMV-KSNKMIRQSIDAGEGK 387
Query: 286 AHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRV 345
A + LQ H+ +DN T IK I L+ KEG R ++MGKRV
Sbjct: 388 AKFLVNSVCDLQMHVNNMYDNSKSNS--NTNEVANGIKQI---LEKKEGLFRKHMMGKRV 442
Query: 346 DFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGA 405
+++ARTVI+PD ++ +++GVP A LT+P+ VT +N +L + V GP PG A
Sbjct: 443 NYAARTVISPDISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPG---A 499
Query: 406 KYIIRDDGQRLDLRYLKKSSDHHLEL---------------GYKVERHLNDGDFVLFNRQ 450
+I ++G ++L K+S + + L KV RHL GD+VL NRQ
Sbjct: 500 NFIEDENGHLINLS--KESQEKRIALSKTLLTSHPHAPRGVNKKVYRHLLSGDYVLANRQ 557
Query: 451 PSLHKMSIMGHRIKIMPYS--TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELM 508
P+LHK IMGHR+K++ + T R++ S S YNADFDGDEMN+H PQS AE+ E+
Sbjct: 558 PTLHKPGIMGHRVKVLGKNEKTLRMHYSNCSTYNADFDGDEMNIHFPQSLLASAEIREIC 617
Query: 509 MVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNIL---MWWEDFDGKV-- 563
+ P++ P+ G++QD +L +TKRDT K F IL W + +
Sbjct: 618 ANNYQYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQAILYASCWSVNTKHPIVT 677
Query: 564 PQPTILKPRPLWTGKQVFNLIIPKQINLFR------------TAAWHADNDKGILTAGDT 611
P P ILKP PLW+GKQ+ + + Q+ + R T W KG+ D+
Sbjct: 678 PPPCILKPVPLWSGKQLISAAL-NQLTIGRAPLNLEAPSKIPTKMW---GTKGLEITRDS 733
Query: 612 LVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 671
V I + E+++G L K G S+ L+H +E PD A L + +L F+
Sbjct: 734 HVIIRQNEMVAGILDKGHFGASSYGLVHTCYELYDPDVAGSLLTLLGRMFTNYLQSRGFT 793
Query: 672 IGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQD--------------KSLEPEPGRT 717
G+ D + K + +T+ KA + + D K+L+ E
Sbjct: 794 CGVDDLLMKNKEEKFRVETLKKANEEGYTVAAKFADLSKYDEQKARDFFSKALQSEREVA 853
Query: 718 MMESFENK-VNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ 776
++ K +NQ + D Q+ NN M +G+KGS +N SQ++ +GQQ
Sbjct: 854 RLDGLLKKGLNQYTSKVIDTLIPGGQQKPFPKNNFSLMTVSGAKGSVVNFSQVSCLLGQQ 913
Query: 777 NVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTA 836
+EGKR+P +TLP F D + GFV + +L G+ PQ++FFH M GREGLIDTA
Sbjct: 914 ELEGKRVPRMVSGKTLPSFQAYDASARAGGFVMDRFLTGVRPQDYFFHCMAGREGLIDTA 973
Query: 837 VKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
VKTS +GY+QR L+K +E + V+YD TVR S G VIQF YGED ++
Sbjct: 974 VKTSRSGYLQRCLIKHLEGLSVQYDNTVRESDGSVIQFNYGEDSLE 1019
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 65/117 (55%), Gaps = 10/117 (8%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTAN 72
++ V F + D++R++SV QI E+ + G P PGGL DP LG +C TC+ +
Sbjct: 12 EISSVSFQFYTSDDVRKLSVKQIVEIESFDMLGGPVPGGLHDPALGPTGPAERCATCSLD 71
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRN 129
ECPGHFGH+ELA P ++ +T+ ++++ CF+C H FK I N
Sbjct: 72 FIECPGHFGHIELAIPCYNPVSFQTIFKLLKNKCFHC---------HHFKHGKPIIN 119
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/54 (66%), Positives = 44/54 (81%)
Query: 1064 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
+S+V+PGE +G + AQSIGEP+TQMTLNTFH AG NVTLG+PRLRE+I A
Sbjct: 1131 RSMVSPGESVGLLCAQSIGEPSTQMTLNTFHLAGRGEANVTLGIPRLRELIMTA 1184
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 5/197 (2%)
Query: 1226 EFDDD-LTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALR 1284
EFD LT + + K +L + I+ EA K L F+ + + T +++
Sbjct: 1415 EFDQKKLTFTISVASDSKKVLMLGIVETEASKFVLKSCKGITRCFVNEKQVGGKTHYSIQ 1474
Query: 1285 --GVNLLAVM-CHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYR 1341
GVNL + + + +N + I++ G+EA R+A+ E+ V + G V+ R
Sbjct: 1475 SEGVNLSEIFELRDKLKIDEIYTNDIYAILQKYGVEACRQAVTSEISNVFAAYGISVDKR 1534
Query: 1342 HLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTE 1401
HL +L D MT+ G A+ R GI N+T P + SFE T L A++ + D + +
Sbjct: 1535 HLILLGDYMTFEGGYRALNRIGI-ENNTSPFQKMSFETTFSFLSKASLMGDYDTVTSPSS 1593
Query: 1402 NIMLGQLAPIGTGDCSL 1418
I+LGQ+ GTG ++
Sbjct: 1594 RIVLGQIVKNGTGSFTI 1610
>sp|Q6GZW7|RPB1_FRG3G Putative DNA-directed RNA polymerase 008R OS=Frog virus 3 (isolate
Goorha) GN=FV3-008R PE=3 SV=1
Length = 1293
Score = 359 bits (922), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 285/941 (30%), Positives = 437/941 (46%), Gaps = 182/941 (19%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKPGGLSDPRLGTI---DRKMKCETCT 70
+V + FG+ SP+EI SVV++ T K + G + DPR+G+ D C TC
Sbjct: 10 QVEGLLFGVCSPEEILATSVVEV----TKSCLKAETGSVYDPRMGSAGVDDDDALCPTCE 65
Query: 71 ANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNP 130
ECPGHFGH+ELAKP+ + F K ++ ++ C C + + P
Sbjct: 66 NTGRECPGHFGHIELAKPV--VLFYKETVAWLKRCCHVCGTVGNE--------------P 109
Query: 131 KNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKL-TIEGMKMIAEY 189
+ AC CGAQ+P + ++ A
Sbjct: 110 RPFFFAPYSACN---------------------------ACGAQRPLVRLVDAHDPCAIR 142
Query: 190 KAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDC-QLLGLNP-KYAR--PDWMI 245
R+K+ + E +P E +L L R+ D D ++LG + R P ++
Sbjct: 143 VTVRRKDGEPETMP----------PELILATLDRVRDSDVDRVLGRGKGSHVRFHPRRLV 192
Query: 246 LQVLPIPPPPVRPS-----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQ 294
+ +P+ PP RP+ D+L+ ++ I++ N+ ++ E + PA +
Sbjct: 193 MTRMPVLPPCCRPNARQWPDGAMQDDNLSVFVSQIVKVNQRIKALEPDN-PA--VEGLVA 249
Query: 295 LLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVIT 354
L+ + DN AT R +P+ I R+ K G +R N+MGKR + + R+V+
Sbjct: 250 QLRLKTLCFVDNTKGKVMHATNR--KPMAGIKERIGKKGGLLRQNIMGKRRNQTGRSVVG 307
Query: 355 PDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE--------------------- 393
PD T+ +D++GVP +IA NLT P VTP+N+ L+ ++
Sbjct: 308 PDGTLEVDEVGVPEAIADNLTVPVMVTPFNVSSLEAMMRDGRVSSVEMRDGTVHRPSEWR 367
Query: 394 --YGPH------PPPGK-TGAKYIIRDDGQRLDLRYLKKS---------SDHHLELGYKV 435
+G H P G+ T Y RD + LR K S LE G V
Sbjct: 368 PSHGDHMETADGSPLGRVTRPSYDARD--PSVVLRSWKTGETVTRPPPFSWPKLEPGMTV 425
Query: 436 ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 495
R L DGD V NRQP+LH+ S++G R+K +P T RLNLSVTS +N DFDGDE N+++P
Sbjct: 426 TRCLVDGDPVALNRQPTLHRNSMLGMRVKRLPGKTIRLNLSVTSGFNMDFDGDEGNLYLP 485
Query: 496 QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTF-IEKDVFMNILM 554
Q + R+E + LM I+S + + +VQD +LGC ++ + LM
Sbjct: 486 QGPQARSETMLLMNPKSVIMSARGPHAEVSLVQDGVLGCHLMSLNSEIPCPPEELATCLM 545
Query: 555 WWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVR 614
+G + P + + + ++P + + D G R
Sbjct: 546 EVHGCEGWDVRDVEKGATP----RDLLSSVLPSTLTV--------DCGGG--------CR 585
Query: 615 IEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGI 674
IE G+++SG L K ++ ++ + E G DAA K + Q+L N WL FS+G
Sbjct: 586 IESGKIVSGHLTK----SAVKKIVRAVCLENGGDAAGKLVDKLQFLTNAWLSHRPFSVGY 641
Query: 675 GDTIAD--AKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNT 732
D + + +T+ + D + K L +A D E+ V+ L
Sbjct: 642 SDCLTERPEETVRMVADAVCS-----KILEAEAADD--------------EDGVSVALCG 682
Query: 733 ARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVD--- 789
ARD + +L+ N + M A SKG N++Q+ +GQQ V G R P +D
Sbjct: 683 ARDRGQAVTCAALTPDNRMAVMSRAQSKGDMFNLTQIAGLLGQQYVGGSR-PGKEIDGGR 741
Query: 790 RTLPHF--------TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
R+LPH+ T Y ESRGFV +S+L+GL P+E FFHA GREG+I T+ T
Sbjct: 742 RSLPHYPRVWDLEQTTLKY--ESRGFVRSSFLKGLNPREVFFHAKSGREGMISTSQMTGV 799
Query: 842 TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
TGY +R++VK ED++ YDGTVR+++G+V+QF+YG GMD
Sbjct: 800 TGYAERKMVKLNEDLVSAYDGTVRDAMGNVVQFVYGGHGMD 840
Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 1284 RGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
+G NL A +CH D R ++ + ++ E LG+ A ++ L + ++ S G + H+
Sbjct: 1127 KGTNLGAFLCHPLADWERVRTDDVWDVYETLGLAAAKKRLYE---LMFSCVGDNLYPAHI 1183
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
+L D M RG I R+ + + GP+ R +FEE++DIL A AE+++
Sbjct: 1184 KLLTDRMMRRGRPTPIDRYTMRTCEVGPLSRAAFEESLDILTGAGCTAETEH 1235
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1098
+ + +++ PGE +G + AQSIG TQ TL+TFH AGV
Sbjct: 930 VARSYAAAVLCPGEAVGVLCAQSIGAKQTQQTLDTFHKAGV 970
>sp|P16355|RPA1_TRYBB DNA-directed RNA polymerase I subunit RPA1 OS=Trypanosoma brucei
brucei GN=TRP11 PE=1 SV=1
Length = 1744
Score = 357 bits (916), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 299/1001 (29%), Positives = 462/1001 (46%), Gaps = 162/1001 (16%)
Query: 236 PKYARPDWMILQVLPIPPPPVRPSDDLTHQLAMIIRHNEN--LRRQERNGAPAHIISEFA 293
P R L + +PP P+R S +R N+N + E+ A + I+
Sbjct: 328 PASERYKLFFLDRILVPPLPLRLSSG--------VRVNDNGLIIPDEQTRALSDILGFVE 379
Query: 294 QLLQFHIATYFDNELPGQPRAT---------------QRSGRPIKSICSRLKAKEGRIRG 338
Q+ FH T N G+ T Q+ I + KEG R
Sbjct: 380 QIECFH--TLSANSTNGRSFITDAQRAVNESNLRNLQQKVDEFYAEIVNSFAKKEGLFRM 437
Query: 339 NLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVT---PYNIERLKELVEYG 395
N+MGKRV+ + R+VI+PDP + +++ +P +A L++PE VT P + LK V G
Sbjct: 438 NMMGKRVNQACRSVISPDPFVEPNEVLLPRPLARALSFPEQVTCFAPARMNLLKHCVVNG 497
Query: 396 PHPPPGKTGAKYIIRDDGQR-LDLRYLKKSSDHHLELGYK---------VERHLNDGDFV 445
P PG T + + R +DL +++ H + V RH+ +GD V
Sbjct: 498 PRKYPGATHIELRHANGEIRSVDLNVPEQTRRQHAARFFAMAQSGVTLIVYRHILNGDRV 557
Query: 446 LFNRQPSLHKMSIMGHRIKIMPYS-TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEV 504
+FNRQP+LHK S+MG+R+K++ S T R + + +NADFDGDEMN+HVPQS ETRAEV
Sbjct: 558 IFNRQPTLHKPSMMGYRVKVLSGSKTIRFHYVNGNSFNADFDGDEMNVHVPQSIETRAEV 617
Query: 505 LELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM-----WWEDF 559
LM + P S RP+ G++QD + +T RD F + F+ ++ + ++
Sbjct: 618 ETLMDANINYLVPTSGRPIRGLIQDHVAAGVLVTLRDKFFDHSTFVQLVYNGVGPYIQEN 677
Query: 560 DG-----KVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAG----- 609
G +P P IL PRP+WTGKQ+ ++++ L + + + GI G
Sbjct: 678 VGITLAELIPIPAILMPRPMWTGKQLISVMVRFSSGLSAASDCGREIEGGITLKGTSQIQ 737
Query: 610 -----------------------DTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVG 646
D+ V EL++G +CKK LG S S H ++E G
Sbjct: 738 PSAFDRIPAGSCDAVRAKSGAVVDSTVMFANSELITGFMCKKQLGASNMSAPHHVYELYG 797
Query: 647 PDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQ 706
P + ++ L + S+ + D M +++ + + ++ L A
Sbjct: 798 PHRTGQLFAAFGRVLLLALRKEGLSLAMDD-------MFLVDE--ERRCDLLRKLDDIAL 848
Query: 707 DKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLS--ESNNLKAMVTAGSKGSFI 764
D E M+ + K+ Q Q+ L N+L M +G+KGS +
Sbjct: 849 DVPDEEATAAPMIADYATKIQQEF---------VPQRMLVPFPKNHLLLMTISGAKGSNL 899
Query: 765 NISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFH 824
N +QM+ +GQQ +G R+ +TLP F ++ S GF S+ G+ P E+ H
Sbjct: 900 NATQMSLQLGQQLFDGLRVKRMNSSKTLPSFFTNEKRARSFGFAMGSFASGIRPAEYTIH 959
Query: 825 AMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
AM GR+GLIDTAVKTS +G++QR L+K +E ++V +D TVR+S G VIQF+YG DG+D
Sbjct: 960 AMAGRDGLIDTAVKTSRSGHLQRCLIKGLESLVVHWDRTVRDSNGSVIQFMYGGDGLDPC 1019
Query: 885 WIESQTLDSLKMKKSE-FDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQK 943
++ TL + +M K D + RF D + +KE+R+ D +
Sbjct: 1020 --KASTLTAWEMMKDNVVDVSKRFGGDAS----ESVAGAEDGAAAGLKEMRNE-DGKPTT 1072
Query: 944 LEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQ 1003
+ +++T +PLP +L DK
Sbjct: 1073 EAVQNAHMEQQLST-----YPLPASL------------------------------DKSL 1097
Query: 1004 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTRE-----AFEWVIGEI 1058
+ PL +K +TL + + +K+ LKE R AFE + +I
Sbjct: 1098 SEYLCKKADFPL---FRKVSTL-------ARWDAKQQLKERLQQRRQKWVGAFEKTLADI 1147
Query: 1059 ES-RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
+ R L +L PGE +G +AAQ+ GEP+TQMTLNTFH AG + +VT G+PRLRE++ A
Sbjct: 1148 TARRRLWALCEPGEPVGLLAAQAAGEPSTQMTLNTFHTAGSTVSHVTEGIPRLRELLIYA 1207
Query: 1118 KKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEA 1158
K + + P N+T+E K + L +T+
Sbjct: 1208 SVNK----AAVVVPVTNATEEDEKVIAKMLRAGVAAKLTDC 1244
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Query: 1276 NMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDG 1335
N+++ ++L V + ++ H+ S + ++ GIE+ AL DEL + F+
Sbjct: 1594 NVMSFLSLFTVGIKSIKLHQ------ACSTDIRDMGTYFGIESGYAALYDELNKL--FNR 1645
Query: 1336 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDY 1395
V+ RHL+++ DT T+RG G+ P+ + +F + L A SD
Sbjct: 1646 YNVDPRHLSLIADTSTHRGRWENFNFTGVISTSASPLFQMTFASSKRWLHRAVSRGMSDD 1705
Query: 1396 LRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIE 1430
L + IM+G+ +GT L + +L++ +E
Sbjct: 1706 LESFSSAIMVGERPRVGTASVRLSTDTAILRDVLE 1740
>sp|P10964|RPA1_YEAST DNA-directed RNA polymerase I subunit RPA190 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA190 PE=1
SV=2
Length = 1664
Score = 357 bits (915), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 238/726 (32%), Positives = 367/726 (50%), Gaps = 91/726 (12%)
Query: 234 LNPKYARPDWMILQVLPIPPPPVRPSDDLTHQL---------------AMIIRH-NENLR 277
L+ K + D + VL +PP R L ++ +++IR N++L
Sbjct: 345 LSRKLVKADSFFMDVLVVPPTRFRLPSKLGEEVHENSQNQLLSKVLTTSLLIRDLNDDLS 404
Query: 278 RQERNGAPA---HIISEFAQLLQFHIATYFDNELPGQPRATQRSGR-----PIKSICSRL 329
+ +++ +I F++L+ + N++ +T+ GR PI + L
Sbjct: 405 KLQKDKVSLEDRRVI--FSRLMNAFVT--IQNDVNAFIDSTKAQGRTSGKVPIPGVKQAL 460
Query: 330 KAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLK 389
+ KEG R ++MGKRV+++AR+VI+PDP I +++GVP A+ LTYPE VT YNI L+
Sbjct: 461 EKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELR 520
Query: 390 ELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYL----KKSSDHHL----------ELGYKV 435
+ V GP PG T I +DG + L + +K+ + L L KV
Sbjct: 521 QAVINGPDKWPGAT---QIQNEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKV 577
Query: 436 ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPY-STFRLNLSVTSPYNADFDGDEMNMHV 494
RH+ + D VL NRQP+LHK S+MGH+++++P T RL+ + T YNADFDGDEMNMH
Sbjct: 578 YRHIKNRDVVLMNRQPTLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHF 637
Query: 495 PQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMN-IL 553
PQ+ RAE L L ++P S PV G++QD + +T +D+F ++ + I
Sbjct: 638 PQNENARAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIY 697
Query: 554 MWWEDFDGKVPQ-------PTILKPRPLWTGKQVFNLIIPK-------QINLF-----RT 594
DG + PTI KP PLWTGKQ+ ++ INL +
Sbjct: 698 GCIRPEDGHTTRSKIVTLPPTIFKPYPLWTGKQIITTVLLNVTPPDMPGINLISKNKIKN 757
Query: 595 AAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFL 654
W KG L + V + G LL G L K G S ++H + E GP+ A K L
Sbjct: 758 EYW----GKGSL---ENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGPEVAAKVL 810
Query: 655 GHTQWLVNYWLLQNAFSIGIGDTIADAK-------TMETINDTISKAKNNVKNL------ 701
L ++ AF+ G+ D A+ ++T DT +A V NL
Sbjct: 811 SVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPA 870
Query: 702 -----IKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
+K+ Q+ + + +KVN + + + N+++AM
Sbjct: 871 DDPELLKRLQEILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMAL 930
Query: 757 AGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGL 816
+G+KGS +N+SQ+ +GQQ +EG+R+P +TLP F + + G+V+ + G+
Sbjct: 931 SGAKGSNVNVSQIMCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGI 990
Query: 817 TPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLY 876
PQE++FH M GREGLIDTAVKTS +GY+QR L K +E + V YD ++R++ G ++QF+Y
Sbjct: 991 KPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVSYDNSIRDADGTLVQFMY 1050
Query: 877 GEDGMD 882
G D +D
Sbjct: 1051 GGDAID 1056
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 58/71 (81%), Gaps = 1/71 (1%)
Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
++ ++++SL+ PGE +G +A+QS+GEP+TQMTLNTFH+AG A NVTLG+PRLREI+ A
Sbjct: 1170 MQLKYMRSLINPGEAVGIIASQSVGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTA 1229
Query: 1118 K-KIKTPSLSV 1127
IKTP +++
Sbjct: 1230 SAAIKTPQMTL 1240
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 1281 MALRGVNLLAVMCHED-VDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVN 1339
+ GVN A+ E +D TSN + +++ G+EA R +++E+ V S V+
Sbjct: 1519 LVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVS 1578
Query: 1340 YRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGV 1399
+RHL ++ D MT +G +A R G+ T M+ S+E T L A + E + L
Sbjct: 1579 FRHLDLIADMMTRQGTYLAFNRQGM-ETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSP 1637
Query: 1400 TENIMLGQLAPIGTG 1414
+ I++G+L +GTG
Sbjct: 1638 SARIVVGKLNNVGTG 1652
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 13 AKVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTA 71
+++ V FGIL+ EIR +S QI + + G P GGL D LG R + C TC
Sbjct: 9 SEITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLRNL-CSTCGL 67
Query: 72 NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI-LADEDDHKFKQALKI 127
+ CPGH GH+EL P ++ F + +R+ C C L + H++ L++
Sbjct: 68 DEKFCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRL 124
>sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens GN=POLR1A
PE=1 SV=2
Length = 1720
Score = 356 bits (914), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 227/641 (35%), Positives = 338/641 (52%), Gaps = 63/641 (9%)
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQ H+ FD+E+ R I L+ KEG R ++MGKRVD++AR+VI P
Sbjct: 394 LQSHVNIVFDSEMDKLMMDKYPGIRQI------LEKKEGLFRKHMMGKRVDYAARSVICP 447
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
D IN +++G+P A LTYP+ VTP+N++ L++ V GP+ PG A +I +DG R
Sbjct: 448 DMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG---ASMVINEDGSR 504
Query: 416 LDLRYLKKSSDHHLE-------------LGYK-VERHLNDGDFVLFNRQPSLHKMSIMGH 461
L + + + G K V RH+ +GD +L NRQP+LH+ SI H
Sbjct: 505 TALSAVDMTQREAVAKQLLTPATGAPKPQGTKIVCRHVKNGDILLLNRQPTLHRPSIQAH 564
Query: 462 RIKIMPY-STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
R +I+P RL+ + YNADFDGDEMN H PQS RAE L + + P+
Sbjct: 565 RARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDG 624
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM-WWEDFDGKVP--QPTILKPRPLWTG 577
+P+ G++QD ++ +T R F ++ +M ++ D G+V P+ILKP PLWTG
Sbjct: 625 QPLAGLIQDHMVSGASMTTRGCFFTREHYMELVYRGLTDKVGRVKLLSPSILKPFPLWTG 684
Query: 578 KQVFNL----IIPKQ---INLFRTA-----AWHADNDKGI-----LTAGDTLVRIEKGEL 620
KQV + IIP+ +NL A AW + + + + ++ V I +GEL
Sbjct: 685 KQVVSTLLINIIPEDHIPLNLSGKAKITGKAWVKETPRSVPGFNPDSMCESQVIIREGEL 744
Query: 621 LSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL-LQNAFSIGIGDTI- 678
L G L K G+S L+H +E G + + K L L +L L F++G+ D +
Sbjct: 745 LCGVLDKAHYGSSAYGLVHCCYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDILV 804
Query: 679 ---ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR-------------TMME-S 721
AD K I ++ V+ + + S + G+ M++
Sbjct: 805 KPKADVKRQRIIEESTHCGPQAVRAALNLPEAASYDEVRGKWQDAHLGKDQRDFNMIDLK 864
Query: 722 FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
F+ +VN N N+L+ MV +G+KGS +N Q++ +GQ +EG+
Sbjct: 865 FKEEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGR 924
Query: 782 RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
R P ++LP F ++ P + GFV +L G+ P EFFFH M GREGL+DTAVKTS
Sbjct: 925 RPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSR 984
Query: 842 TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
+GY+QR ++K +E ++V+YD TVR+S G V+QFLYGEDG+D
Sbjct: 985 SGYLQRCIIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD 1025
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/107 (49%), Positives = 73/107 (68%), Gaps = 6/107 (5%)
Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
++ ++ +SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ VA
Sbjct: 1196 LQLKWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVA 1255
Query: 1118 -KKIKTPSLSVFLKPGVNSTK--ERAKNVQCALEYTTLRSVTEATEV 1161
IKTP +SV P +N+ K +R K+++ L L V + +V
Sbjct: 1256 SANIKTPMMSV---PVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDV 1299
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 2/131 (1%)
Query: 1285 GVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
G+NL + + +V D RR SN + I GIEA R + E++ V + G V+ RHL
Sbjct: 1582 GINLPELFKYAEVLDLRRLYSNDIHAIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHL 1641
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
+++ D M + G + R GI R+++ P+ + +FE + L A + D LR + +
Sbjct: 1642 SLVADYMCFEGVYKPLNRFGI-RSNSSPLQQMTFETSFQFLKQATMLGSHDELRSPSACL 1700
Query: 1404 MLGQLAPIGTG 1414
++G++ GTG
Sbjct: 1701 VVGKVVRGGTG 1711
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTAN 72
+++ + FG+ S +E++++SV I + + G P GL D LG D K C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYLDSLGNPSANGLYDLALGPADSKEVCSTCVQD 70
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI 112
+ C GH GH+EL +++ + ++R C NC +
Sbjct: 71 FSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHML 110
>sp|O35134|RPA1_MOUSE DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus GN=Polr1a
PE=1 SV=2
Length = 1717
Score = 355 bits (910), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 227/641 (35%), Positives = 336/641 (52%), Gaps = 63/641 (9%)
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQ H+ FD+E+ R I L+ KEG R ++MGKRVD++AR+VI P
Sbjct: 401 LQSHVNIVFDSEMDKLMLEKYPGIRQI------LEKKEGLFRKHMMGKRVDYAARSVICP 454
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
D IN +++G+P A LTYP+ VTP+N++ L++ V GP+ PG A +I +DG R
Sbjct: 455 DMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG---ASMVINEDGSR 511
Query: 416 LDLRYLKKSSDHHLE-------------LGYKVE-RHLNDGDFVLFNRQPSLHKMSIMGH 461
L + + + G KV RH+ +GD +L NRQP+LH+ SI H
Sbjct: 512 TALSSVDAAQREAVAKQLLTPATGAPKPQGTKVVCRHVKNGDILLLNRQPTLHRPSIQAH 571
Query: 462 RIKIMPY-STFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSN 520
R +I+P RL+ + YNADFDGDEMN H PQS RAE L + + P+
Sbjct: 572 RARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYVLACTDQQYLVPKDG 631
Query: 521 RPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM-WWEDFDGKVPQ--PTILKPRPLWTG 577
+P+ G++QD ++ +T R F ++ +M ++ D G+V P ILKP PLWTG
Sbjct: 632 QPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTG 691
Query: 578 KQVFNL----IIPKQ---INLFRTA-----AWHADNDKGI-----LTAGDTLVRIEKGEL 620
KQV + IIP+ +NL A AW + + I + ++ V I +GEL
Sbjct: 692 KQVVSTLLINIIPEDYAPLNLSGKAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGEL 751
Query: 621 LSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWL-LQNAFSIGIGDTI- 678
L G L K G+S L+H +E G + + + L L +L L F++G+ D +
Sbjct: 752 LCGVLDKAHYGSSAYGLVHCCYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDILV 811
Query: 679 ---ADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGR-------------TMME-S 721
AD I ++ VK + + S + G+ M++
Sbjct: 812 KPNADVVRQRIIEESTQCGPQAVKAALSLPETASCDEIQGKWQDAHLSKDQRDFNMIDMK 871
Query: 722 FENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGK 781
F+ +VN N NNL+ MV +G+KGS +N Q++ +GQ +EG+
Sbjct: 872 FKEEVNHYSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGR 931
Query: 782 RIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSE 841
R P ++LP F ++ P + GFV +L G+ P EFFFH M GREGL+DTAVKTS
Sbjct: 932 RPPLMASGKSLPCFEPYEFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSR 991
Query: 842 TGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
+GY+QR ++K +E ++++YD TVR+S G V+QFLYGEDG+D
Sbjct: 992 SGYLQRCIIKHLEGLVIQYDLTVRDSDGSVVQFLYGEDGLD 1032
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 89/151 (58%), Gaps = 13/151 (8%)
Query: 1058 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
++ ++ +SL PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ VA
Sbjct: 1203 LQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVA 1262
Query: 1118 K-KIKTPSLSVFLKPGVNSTK--ERAKNVQCALEYTTLRSVTEATEVWYDPDPMG----- 1169
IKTP +SV P ++ K ++ K+++ L L V + ++ + MG
Sbjct: 1263 SANIKTPMMSV---PVFDTKKALKKVKSLKKRLTRVCLGEVLQKVDI-QESFCMGEKRNK 1318
Query: 1170 -TIIEEDVEFVKSYYEMPDEDIAPEKISPWL 1199
+ E +F+ Y ++ + PE I ++
Sbjct: 1319 FQVYELRFQFLPHAYYQQEKCLRPEDILHFM 1349
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 69/131 (52%), Gaps = 2/131 (1%)
Query: 1285 GVNLLAVMCHEDV-DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHL 1343
G+NL + + ++ D RR SN + + GIEA R + E++ V + G V+ RHL
Sbjct: 1579 GINLPELFKYSEILDLRRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHL 1638
Query: 1344 AILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
+++ D M + G + R GI ++ + P+ + +FE + L A + D L+ + +
Sbjct: 1639 SLVADYMCFEGVYKPLNRFGI-QSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACL 1697
Query: 1404 MLGQLAPIGTG 1414
++G++ GTG
Sbjct: 1698 VVGKVVKGGTG 1708
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTAN 72
+++ + FG+ S +E++++SV I + + G P GL D LG D K C TC +
Sbjct: 11 RLQGISFGMYSAEELKKLSVKSITNPRYVDYLGNPSANGLYDLALGPADSKEVCATCVQD 70
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKI 112
C GH GH++L +++ + ++R C +C +
Sbjct: 71 FNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSCLSCHML 110
>sp|P25202|RPC1_GIAIN DNA-directed RNA polymerase III subunit RPC1 OS=Giardia intestinalis
GN=RPOA3 PE=3 SV=1
Length = 1741
Score = 291 bits (745), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 178/508 (35%), Positives = 258/508 (50%), Gaps = 48/508 (9%)
Query: 435 VERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHV 494
V RHL D +LFNRQPSLH+MSIM I TF N V SP+NADFDGDEMN+
Sbjct: 673 VYRHLLPNDTLLFNRQPSLHRMSIMQFNAVIHENRTFSFNPVVCSPFNADFDGDEMNIFY 732
Query: 495 PQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILM 554
Q E RAE LM + I+SP+ ++G+ QD L G ++ + F+ + + +
Sbjct: 733 MQGQEARAEAGILMGSHENIISPRHGECMIGLTQDFLTGIYLLSGKGIFMTRQEYCQHVS 792
Query: 555 WWEDFDG---------------------------------KVP---QPTILKPRPLWTGK 578
+ D G KVP QP I+ PR L++GK
Sbjct: 793 YGCDGFGDATYGVSLYNYGREFIKSIHDRRGTEEDTVGFVKVPCLSQPCIVYPRQLYSGK 852
Query: 579 QVFNLIIPKQ------INL-FRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLG 631
QV ++++ INL + D+D+ L+ D + I+ E L G L K L
Sbjct: 853 QVLSVLMKGNDFDSVNINLEHGDKTYKKDSDRRALSVNDDYIIIQNSEHLVGRLTKTFLA 912
Query: 632 TSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTI 691
+S + + + + GP +A + + + +L+ F+IGI D + + + +
Sbjct: 913 SSKNCIFYFLVQNYGPVSAARIMLRFAKVAARFLMNYGFTIGIDDVMPSQRVLGKKEVIV 972
Query: 692 SKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNL 751
+ + I+ + LE PG T+ E+ E +NQ+L+ R+ A K L +N
Sbjct: 973 QEGYEKAQEKIRDYESGKLEAIPGSTVQETLEATLNQILSNVRESCAQIALKELHFTNKP 1032
Query: 752 KAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENS 811
M GSKGS INI+QM +GQQ+ G R P F R+ P+F P ++GF+ NS
Sbjct: 1033 LIMSLCGSKGSPINIAQMIIILGQQSFGGSRAPDDFYTRSTPYFYHYSKEPNAKGFILNS 1092
Query: 812 YLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDV 871
+ GL P EF HA GR+G+ID+A KT++TGY+QRRLVK +ED+ V YD TVRNS V
Sbjct: 1093 FYTGLLPFEFLAHARAGRDGVIDSACKTADTGYLQRRLVKCLEDLSVSYDFTVRNSKKSV 1152
Query: 872 IQFLYGEDGMDSVWIESQT-----LDSL 894
+QF +G DG D + +E T LD+L
Sbjct: 1153 VQFRFGHDGFDPIKLEVGTGQCFDLDTL 1180
Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 118/437 (27%), Positives = 195/437 (44%), Gaps = 83/437 (18%)
Query: 1046 LTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTL 1105
LT++ + + ++ ++++ + PG G VAAQS+GEP+TQMTL +FH+AG+++ N+T
Sbjct: 1267 LTKKDIDDFLRQVRRKYIRLNLEPGSPCGAVAAQSVGEPSTQMTLKSFHHAGLASMNITQ 1326
Query: 1106 GVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDP 1165
GVPRL+EI++ KI TP +V L V+ + A + LE R + E Y
Sbjct: 1327 GVPRLKEIVDGVVKISTPITTVELHVDVDKEELAATVTEKYLEKA--RMMKNIIECTYLG 1384
Query: 1166 DPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQ 1225
+IIE Y S + IE+N +M + + +A +
Sbjct: 1385 QISASIIE-------CY-------------SQSVCHIEVNLDMKIIADMGLAGIIT---- 1420
Query: 1226 EFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESA-----------EDDVFLKKIE 1274
+ + I ++D A KL + + G ++ SA DD+
Sbjct: 1421 -VETVVASILHNDKAKKL------VGQDQSSGSVSIHSATRFSVRPLTQSRDDLLFDIQS 1473
Query: 1275 SNMLTEMA-----------------------------------LRGVNLLAVMCHEDVDA 1299
+L M + G+ L ++ +D
Sbjct: 1474 LKLLLPMIPVSGISTCSRAVINEYKEFCQGATSSAPLTKYNLLVEGIGLQNILNVSGIDF 1533
Query: 1300 RRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAI 1359
RT SN+++E+ LGIEA + +E++ + G V+ RH+ +L D M +RG ++
Sbjct: 1534 TRTLSNNIVEVANTLGIEAAVATISNEIKACMDSHGMAVDMRHIRLLADIMCFRGRVLGF 1593
Query: 1360 TRHGINRNDT-GPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSL 1418
TR G+ + +M SFE+T + L +AA+ + D GVTE+I+LG+ +GTG SL
Sbjct: 1594 TRFGLTKMKADSVIMLASFEKTGEHLFNAALGNKVDEANGVTESIILGKPMSMGTGSFSL 1653
Query: 1419 YLN---DEMLKNAIELQ 1432
DE IE Q
Sbjct: 1654 LQAPYFDEKTGKTIEYQ 1670
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 108/204 (52%), Gaps = 19/204 (9%)
Query: 213 TAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRPS-----------DD 261
TA R + + ISD +L + RP +IL +P+PP +RPS D+
Sbjct: 276 TASRFIAQHQGISDRATRLTS-HAFLTRPQDVILTHIPVPPSCLRPSVQSGSGAGTTEDN 334
Query: 262 LTHQLAMIIRHNENLRRQERNGAPA--HIISEFAQLLQFHIATYFDNELPG--QP--RAT 315
LT L I+ N+ L+ +GA A + +++ QL ++ + ++PG QP T
Sbjct: 335 LTSHLVRILTINDKLKEAMVSGAVATSKVYAKWDQL-NMDVSLLYIGKIPGGVQPVKNKT 393
Query: 316 QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLT 375
+ I RLK K GR R NL GKRV+FS RTVI+P+P +++ Q+ +P IA NLT
Sbjct: 394 DSGTKEGTGIIDRLKGKAGRFRSNLSGKRVNFSGRTVISPNPYLSMQQVAIPRLIAQNLT 453
Query: 376 YPETVTPYNIERLKELVEYGPHPP 399
+PE VT NI L+EL+ G P
Sbjct: 454 FPEIVTSRNIRFLRELILNGKTYP 477
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 108/233 (46%), Gaps = 17/233 (7%)
Query: 4 RFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERG-KPKPGGLSDPRLGTIDR 62
RFP +V + F +LS + + ++S VQI E P G+ D RLG D+
Sbjct: 22 RFP------KRVEKLVFSVLSSNALMKLSEVQITTPILYEHYPSPATNGVLDKRLGLSDK 75
Query: 63 KMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFK 122
KC TC + C GHFG + LA P+FH G + +++ VC CS++ E D +
Sbjct: 76 VGKCATCGKDTKMCIGHFGTISLALPVFHPGLINDARTMLSIVCPFCSRVKISEAD---R 132
Query: 123 QALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPL-KKNKGGCGAQQPKLTIE 181
K+ N K L + +A + K +++ P + KK++G ++
Sbjct: 133 LKYKVLNHKFSLAIVKEAQEQAKK-----QVNCPFCHAPSTICKKSQGFRVLREMHYEER 187
Query: 182 GMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGL 234
K++A+ +K + ++L + + R + + L +L+++ + D LG+
Sbjct: 188 ATKILADVIKHQKDIEKIQELDQRL-RNHVVDPIQALHILQKVPECDYPYLGI 239
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 736,733,900
Number of Sequences: 539616
Number of extensions: 36182507
Number of successful extensions: 300773
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1893
Number of HSP's successfully gapped in prelim test: 3733
Number of HSP's that attempted gapping in prelim test: 137388
Number of HSP's gapped (non-prelim): 51769
length of query: 1815
length of database: 191,569,459
effective HSP length: 132
effective length of query: 1683
effective length of database: 120,340,147
effective search space: 202532467401
effective search space used: 202532467401
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 69 (31.2 bits)