RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 000235
(1815 letters)
>gnl|CDD|236292 PRK08566, PRK08566, DNA-directed RNA polymerase subunit A';
Validated.
Length = 882
Score = 997 bits (2581), Expect = 0.0
Identities = 405/891 (45%), Positives = 561/891 (62%), Gaps = 59/891 (6%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKCETCTAN 72
++ ++FG+LSP+EIR+MSV +I +T + G P GGL DPRLG ID ++C+TC
Sbjct: 8 RIGSIKFGLLSPEEIRKMSVTKIITADTYDDDGYPIDGGLMDPRLGVIDPGLRCKTCGGR 67
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD-----HKFKQALKI 127
ECPGHFGH+ELA+P+ H+GF K + ++R+ C C ++ E++ K ++ +
Sbjct: 68 AGECPGHFGHIELARPVIHVGFAKLIYKLLRATCRECGRLKLTEEEIEEYLEKLERLKEW 127
Query: 128 RNPKNRL-KKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMI 186
+ + L K++ + C P CG +Q K+ E K
Sbjct: 128 GSLADDLIKEVKKEAAKRMVC---------------P------HCGEKQYKIKFE--KPT 164
Query: 187 AEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMIL 246
Y E+ E + + LT + L++I DED +LLG+NP+ ARP+WM+L
Sbjct: 165 TFY----------EERKEGLVK---LTPSDIRERLEKIPDEDLELLGINPEVARPEWMVL 211
Query: 247 QVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLL 296
VLP+PP VRPS DDLTH+L IIR N+ L+ GAP II + +LL
Sbjct: 212 TVLPVPPVTVRPSITLETGQRSEDDLTHKLVDIIRINQRLKENIEAGAPQLIIEDLWELL 271
Query: 297 QFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPD 356
Q+H+ TYFDNE+PG P A RSGRP+K++ RLK KEGR RGNL GKRV+FSARTVI+PD
Sbjct: 272 QYHVTTYFDNEIPGIPPARHRSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPD 331
Query: 357 PTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRL 416
P ++I+++GVP +IA LT PE VT +NIE L+E V GP PG A Y+IR DG+R+
Sbjct: 332 PNLSINEVGVPEAIAKELTVPERVTEWNIEELREYVLNGPEKHPG---ANYVIRPDGRRI 388
Query: 417 DLRYL-KKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNL 475
L K+ LE G+ VERHL DGD VLFNRQPSLH+MSIM HR++++P TFRLNL
Sbjct: 389 KLTDKNKEELAEKLEPGWIVERHLIDGDIVLFNRQPSLHRMSIMAHRVRVLPGKTFRLNL 448
Query: 476 SVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCR 535
+V PYNADFDGDEMN+HVPQ+ E RAE LM+V + I+SP+ P++G +QD + G
Sbjct: 449 AVCPPYNADFDGDEMNLHVPQTEEARAEARILMLVQEHILSPRYGGPIIGGIQDHISGAY 508
Query: 536 KITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINLFRTA 595
+T++ T K+ +++L + P+P I +P WTGKQ+F+L +PK +NL A
Sbjct: 509 LLTRKSTLFTKEEALDLLRAAGIDELPEPEPAIENGKPYWTGKQIFSLFLPKDLNLEFKA 568
Query: 596 A--WHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
D K D V I+ G+LL G + KK +G GS++ I +E GP+ AR+F
Sbjct: 569 KICSGCDECKKEDCEHDAYVVIKNGKLLEGVIDKKAIGAEQGSILDRIVKEYGPERARRF 628
Query: 654 LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
L L +++ F+ GI D + E I++ I +A+ V+ LI+ ++ LEP
Sbjct: 629 LDSVTRLAIRFIMLRGFTTGIDDEDIPEEAKEEIDEIIEEAEKRVEELIEAYENGELEPL 688
Query: 714 PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
PGRT+ E+ E K+ QVL ARDEAG A+K L N M G++GS +N++QM ACV
Sbjct: 689 PGRTLEETLEMKIMQVLGKARDEAGEIAEKYLGLDNPAVIMARTGARGSMLNLTQMAACV 748
Query: 774 GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
GQQ+V G+RI G+ DRTLPHF D G E+RGFV +SY GLTP EFFFHAMGGREGL+
Sbjct: 749 GQQSVRGERIRRGYRDRTLPHFKPGDLGAEARGFVRSSYKSGLTPTEFFFHAMGGREGLV 808
Query: 834 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSV 884
DTAV+TS++GY+QRRL+ A++D+ V+YDGTVR++ G+++QF YGEDG+D +
Sbjct: 809 DTAVRTSQSGYMQRRLINALQDLKVEYDGTVRDTRGNIVQFKYGEDGVDPM 859
>gnl|CDD|233843 TIGR02390, RNA_pol_rpoA1, DNA-directed RNA polymerase subunit A'.
This family consists of the archaeal A' subunit of the
DNA-directed RNA polymerase. The example from
Methanocaldococcus jannaschii contains an intein.
Length = 867
Score = 927 bits (2399), Expect = 0.0
Identities = 405/889 (45%), Positives = 560/889 (62%), Gaps = 60/889 (6%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKPGGLSDPRLGTIDRKMKCETCTAN 72
K+ ++FG+LSP+EIR+MSVV++ +T + G P GGL DPRLG I+ ++C+TC
Sbjct: 3 KIGSIKFGLLSPEEIRKMSVVEVVTADTYDDDGYPIEGGLMDPRLGVIEPGLRCKTCGGK 62
Query: 73 MAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHK--FKQALKIRN- 129
+ ECPGHFGH+ELA+P+ H+GF K + I+R+ C C +I E++ + ++ K++
Sbjct: 63 VGECPGHFGHIELARPVVHVGFAKEIYKILRATCRKCGRITLTEEEIEQYLEKINKLKEE 122
Query: 130 ----PKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKM 185
++KI+ + KC CG +Q K+ E
Sbjct: 123 GGDLASTLIEKIVKEAAKRMKCPH---------------------CGEEQKKIKFE---- 157
Query: 186 IAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMI 245
K E+ E + LT + L++I DED +LLG+NPK ARP+WM+
Sbjct: 158 --------KPTYFYEEGKEGDVK---LTPSEIRERLEKIPDEDAELLGINPKVARPEWMV 206
Query: 246 LQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQL 295
L VLP+PP VRPS DDLTH+L IIR N+ L+ GAP II + +L
Sbjct: 207 LTVLPVPPVTVRPSITLETGERSEDDLTHKLVDIIRINQRLKENIEAGAPQLIIEDLWEL 266
Query: 296 LQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITP 355
LQ+H+ATYFDNELPG P A RSGRP+K++ RLK KEGR RGNL GKRV+FSARTVI+P
Sbjct: 267 LQYHVATYFDNELPGIPPARHRSGRPLKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISP 326
Query: 356 DPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQR 415
DP I+I+++GVP IA LT PE VTP+NI+ L+E V GP PG A Y+IR DG+R
Sbjct: 327 DPNISINEVGVPEQIAKELTVPERVTPWNIDELREYVLNGPDSWPG---ANYVIRPDGRR 383
Query: 416 LDLRYLKKSS-DHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLN 474
+ +R K LE G+ VERHL DGD VLFNRQPSLH+MS+MGH++K++P TFRLN
Sbjct: 384 IKIRDENKEELAERLEPGWVVERHLIDGDIVLFNRQPSLHRMSMMGHKVKVLPGKTFRLN 443
Query: 475 LSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGC 534
L+V PYNADFDGDEMN+HVPQ+ E RAE ELM+V + I++P+ P++G + D + G
Sbjct: 444 LAVCPPYNADFDGDEMNLHVPQTEEARAEARELMLVEEHILTPRYGGPIIGGIHDYISGA 503
Query: 535 RKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIPKQINL-FR 593
+T + T K+ + ++ + G P+P I KP+ WTGKQ+F+ +P+ +N R
Sbjct: 504 YLLTHKSTLFTKEE-VQTILGVAGYFGDPPEPAIEKPKEYWTGKQIFSAFLPEDLNFEGR 562
Query: 594 TAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKF 653
+D K D V I+ G+LL G + KK +G G ++H I E GP+AAR+F
Sbjct: 563 AKICSSDACKKEECPHDAYVVIKNGKLLKGVIDKKAIGAEKGKILHRIVREYGPEAARRF 622
Query: 654 LGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPE 713
L L ++ F+ GI D + E I + I KA+ V NLI++ ++ LEP
Sbjct: 623 LDSVTRLFIRFITLRGFTTGIDDIDIPKEAKEEIEELIEKAEKRVDNLIERYRNGELEPL 682
Query: 714 PGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACV 773
PGRT+ E+ E K+ +VL ARDEAG A+K L N+ M G++GS +NI+QM A V
Sbjct: 683 PGRTVEETLEMKIMEVLGKARDEAGEVAEKYLDPENHAVIMARTGARGSLLNITQMAAMV 742
Query: 774 GQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLI 833
GQQ+V G RI G+ +RTLPHF K D G ++RGFV +S+ +GL P E+FFHA GGREGL+
Sbjct: 743 GQQSVRGGRIRRGYRNRTLPHFKKGDIGAKARGFVRSSFKKGLDPTEYFFHAAGGREGLV 802
Query: 834 DTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
DTAV+TS++GY+QRRL+ A++D+ V+YDGTVR++ G++IQF YGEDG+D
Sbjct: 803 DTAVRTSQSGYMQRRLINALQDLYVEYDGTVRDTRGNLIQFKYGEDGVD 851
>gnl|CDD|223164 COG0086, RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription].
Length = 808
Score = 782 bits (2021), Expect = 0.0
Identities = 284/880 (32%), Positives = 415/880 (47%), Gaps = 112/880 (12%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKCETCTANMAEC 76
++FG+ SP+EIR +++ ET R KP+ GGL D R+ D+ +C TC C
Sbjct: 7 IKFGLASPEEIRS-WSGEVKKPETINYRTKPERGGLFDERIFGPDKDYEC-TCGKYKRIC 64
Query: 77 PGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIRNPKNRLKK 136
PG FGH+ELA P+ HI F K++ S++ C +C ++L E L+ N +
Sbjct: 65 PGGFGHIELAAPVAHIWFFKSIPSLLDMTCRDCERVLYFEAYVVLGTDLEKIQLLNETEY 124
Query: 137 ILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKN 196
+ D + C CGA+ K+ +E + E +
Sbjct: 125 VYD-----SFC---------------------AHCGAEAIKILLEKPDLETERE------ 152
Query: 197 DDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVLPIPPPPV 256
++TL+ +V +LKR+ D LL N RP+WMIL VLP+PPP +
Sbjct: 153 ------------EETLSPTKVKKLLKRLKVVDAFLLSGN----RPEWMILTVLPVPPPDL 196
Query: 257 RPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFHIATYFDN 306
RPS DL +I N L+R AP I+ ++LQ + FDN
Sbjct: 197 RPSIQLDGGRFAESDLNDLYRRVINRNNRLKRLLELAAP-IIVRNEKRMLQEAVDALFDN 255
Query: 307 ELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGV 366
+PRA GRP+KS+ RLK K+GR R NL+GKRVD+S R+VI+ P + ++Q GV
Sbjct: 256 ---RRPRAVTG-GRPLKSLSQRLKGKQGRFRQNLLGKRVDYSGRSVISVGPNLKLNQCGV 311
Query: 367 PWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSD 426
P +AL L P VT NIE L+ TGAKY R +RL
Sbjct: 312 PKKMALELFKPFVVTELNIEGLR-------------TGAKYAKRMVERRLPE-------- 350
Query: 427 HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP-YSTFRLNLSVTSPYNADF 485
+ V R + DGD VL NR P+LH++SIM ++P RL+ V YNADF
Sbjct: 351 -----VWDVLREVIDGDPVLLNRAPTLHRLSIMQAFEPVLPEGKAIRLHPLVCEAYNADF 405
Query: 486 DGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIE 545
DGDEM +HVP S E AE LM I++P P++ +QDT+ G +T D +
Sbjct: 406 DGDEMAVHVPASGEAAAEARGLMGTQMNILTPHYGGPIVAPIQDTVGGPYLLTIVDAKLP 465
Query: 546 KDVFMNILMWWEDFDGKVPQPTILKPRPLWTGKQVFNLIIP--KQINLFRTAAWHADNDK 603
I + E D + I K L TGK + + I P ++++ T ++
Sbjct: 466 STPVGEIYLKDEYADDREKAEAIAKKIELTTGKVIVSTISPDLAELSIIVTTDGRRIFNR 525
Query: 604 GILTAGDTLVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNY 663
G+ D LV+I G+L+ K + ++ EV A K L L N
Sbjct: 526 GLPEDKDVLVKIVNGKLI-----KGVIDKKIVTIYREYGPEVASKALVKLL---DKLKNL 577
Query: 664 WLLQNA-FSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESF 722
+ F IGIG D + + ++ + +A+ +V LI Q ++ L ++E
Sbjct: 578 GIKGIGGFGIGIGR--KDIEAEDEKDEIVIEAEGSVLKLILQYEEGDLTRTERNNIVEII 635
Query: 723 ENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKR 782
E + L A E + + G G+ +NISQ+ +GQQ V G++
Sbjct: 636 EVLGIEALRNAIIEEIKITLEEQGLDFV--DIRHMGLSGARMNISQIVQLIGQQGVMGEK 693
Query: 783 IPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSET 842
I F E+ G E+S+L GLT E+F H +GGR GL+DTA+KT+++
Sbjct: 694 ISVL----ARAAFEVTVKHLEAEGPGESSFLEGLTENEYFGHPIGGRTGLVDTALKTADS 749
Query: 843 GYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD 882
GY+ RRLV +D++V+ D V + +G VIQF YGEDG D
Sbjct: 750 GYLTRRLVDVAQDLIVQEDDCVTDGIGVVIQFEYGEDGED 789
Score = 117 bits (296), Expect = 2e-26
Identities = 90/370 (24%), Positives = 149/370 (40%), Gaps = 58/370 (15%)
Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG--VSAKNVTLGVPRLREIINVAKKIKT 1122
+ G AA++ G TQM + T HY G V+ T+G P L I++ AK T
Sbjct: 409 EMAVHVPASGEAAAEARGLMGTQMNILTPHYGGPIVAPIQDTVGGPYLLTIVD-AKLPST 467
Query: 1123 PSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSY 1182
P ++LK +E+A+ + +E TT + + D + I+
Sbjct: 468 PVGEIYLKDEYADDREKAEAIAKKIELTTGKVIVSTISP--DLAELSIIVT--------- 516
Query: 1183 YEMPDEDIAPEKISPW---LLRIELNREM---MVDKKLSMAAVAEKI-NQEFDDDLTCIF 1235
D + P +L +N ++ ++DKK+ + + + L
Sbjct: 517 ---TDGRRIFNRGLPEDKDVLVKIVNGKLIKGVIDKKI--VTIYREYGPEVASKALV--- 568
Query: 1236 NDDNADKLILR---------IRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGV 1286
DKL I I D AED+ + ++ E G
Sbjct: 569 --KLLDKLKNLGIKGIGGFGIGIGRK--------DIEAEDE------KDEIVIEA--EGS 610
Query: 1287 NLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVN-YRHLAI 1345
L ++ +E+ D RT N+++EIIEVLGIEA+R A+++E+++ + G RH+ +
Sbjct: 611 VLKLILQYEEGDLTRTERNNIVEIIEVLGIEALRNAIIEEIKITLEEQGLDFVDIRHMGL 670
Query: 1346 LCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIML 1405
M + I + G+ + R +FE T L+A ES +L G+TEN
Sbjct: 671 SGARMNISQIVQLIGQQGVMGEKISVLARAAFEVT-VKHLEAEGPGESSFLEGLTENEYF 729
Query: 1406 GQLAPIGTGD 1415
G TG
Sbjct: 730 GHPIGGRTGL 739
>gnl|CDD|132720 cd02584, RNAP_II_Rpb1_C, Largest subunit (Rpb1) of Eukaryotic RNA
polymerase II (RNAP II), C-terminal domain. RNA
polymerase II (RNAP II) is a large multi-subunit complex
responsible for the synthesis of mRNA. RNAP II consists
of a 10-subunit core enzyme and a peripheral heterodimer
of two subunits. The largest core subunit (Rpb1) of yeast
RNAP II is the best characterized member of this family.
Structure studies suggest that RNAP complexes from
different organisms share a crab-claw-shape structure. In
yeast, Rpb1 and Rpb2, the largest and the second largest
subunits, each makes up one clamp, one jaw, and part of
the cleft. Rpb1 interacts with Rpb2 to form the DNA entry
and RNA exit channels in addition to the catalytic center
of RNA synthesis. The C-terminal domain of Rpb1 makes up
part of the foot and jaw structures.
Length = 410
Score = 740 bits (1913), Expect = 0.0
Identities = 265/414 (64%), Positives = 319/414 (77%), Gaps = 40/414 (9%)
Query: 1044 HRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
+RL +EAF+W++GEIE+RF +SLV PGEM+G +AAQSIGEPATQMTLNTFH+AGVSAKNV
Sbjct: 1 YRLNKEAFDWILGEIETRFNRSLVHPGEMVGTIAAQSIGEPATQMTLNTFHFAGVSAKNV 60
Query: 1104 TLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWY 1163
TLGVPRL+EIINVAK IKTPSL+V+L+PG +E+AK +Q LE+TTL+ VT ATE++Y
Sbjct: 61 TLGVPRLKEIINVAKNIKTPSLTVYLEPGFAKDEEKAKKIQSRLEHTTLKDVTAATEIYY 120
Query: 1164 DPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKI 1223
DPDP T+IEED EFV+SY+E PDED+ +++SPWLLRIEL+R+ M DKKLSM +A+KI
Sbjct: 121 DPDPQNTVIEEDKEFVESYFEFPDEDVEQDRLSPWLLRIELDRKKMTDKKLSMEQIAKKI 180
Query: 1224 NQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMAL 1283
+EF DDL IF+DDNA+KL++RIRI+ND+ K E + EDDVFLKKIESNML++M L
Sbjct: 181 KEEFKDDLNVIFSDDNAEKLVIRIRIINDDEEKEEDS----EDDVFLKKIESNMLSDMTL 236
Query: 1284 R------------------------------------GVNLLAVMCHEDVDARRTTSNHL 1307
+ GVNL V+ H VD RTTSN +
Sbjct: 237 KGIEGIRKVFIREENKKKVDIETGEFKKREEWVLETDGVNLREVLSHPGVDPTRTTSNDI 296
Query: 1308 IEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRN 1367
+EI EVLGIEA R+ALL ELR VISFDGSYVNYRHLA+LCD MT RGHLMAITRHGINR
Sbjct: 297 VEIFEVLGIEAARKALLKELRNVISFDGSYVNYRHLALLCDVMTQRGHLMAITRHGINRQ 356
Query: 1368 DTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLN 1421
DTGP+MRCSFEETVDILL+AA F E+D L+GV+ENIMLGQLAPIGTG L L+
Sbjct: 357 DTGPLMRCSFEETVDILLEAAAFGETDDLKGVSENIMLGQLAPIGTGCFDLLLD 410
>gnl|CDD|184940 PRK14977, PRK14977, bifunctional DNA-directed RNA polymerase A'/A''
subunit; Provisional.
Length = 1321
Score = 721 bits (1862), Expect = 0.0
Identities = 365/914 (39%), Positives = 509/914 (55%), Gaps = 81/914 (8%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGET-TERGKPKPGGLSDPRLGTIDRKMKCETCTANMAEC 76
+ FG++SP + R++ +I E E G P GGL D RLGTI+ KC TC A C
Sbjct: 12 IIFGLISPADARKIGFAEITAPEAYDEDGLPVQGGLLDGRLGTIEPGQKCLTCGNLAANC 71
Query: 77 PGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKFKQALKIR------NP 130
PGHFGH+ELA+P+ HI F+ + ++ S C C+K+ ++D + ++ P
Sbjct: 72 PGHFGHIELAEPVIHIAFIDNIKDLLNSTCHKCAKLKLPQEDLNVFKLIEEAHAAARDIP 131
Query: 131 KNRL-KKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEGMKMIAEY 189
+ R+ +I++ +++ K + P CGA Q +L E + E
Sbjct: 132 EKRIDDEIIEEVRDQVKVYAKKAKECPH-------------CGAPQHELEFEEPTIFIEK 178
Query: 190 KAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMILQVL 249
E E + L + + ++I D+D +L+G +PK ARP+W +LQ
Sbjct: 179 -------------TEIEEHR--LLPIEIRDIFEKIIDDDLELIGFDPKKARPEWAVLQAF 223
Query: 250 PIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLLQFH 299
+PP RPS DDLTH L II+ N+ L+ + GAP I+ + LQ+H
Sbjct: 224 LVPPLTARPSIILETGERSEDDLTHILVDIIKANQKLKESKDAGAPPLIVEDEVDHLQYH 283
Query: 300 IATYFDNELPGQPRATQR-SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPT 358
+T+FDN G P+A + SGRP+KS+ RLK KEGR RGNL+GKRVDFSARTVI+PDP
Sbjct: 284 TSTFFDNATAGIPQAHHKGSGRPLKSLFQRLKGKEGRFRGNLIGKRVDFSARTVISPDPM 343
Query: 359 INIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDL 418
I+ID++GVP +IA+ LT PE V NIE++KELV GP PG A I + DG ++ L
Sbjct: 344 IDIDEVGVPEAIAMKLTIPEIVNENNIEKMKELVINGPDEFPG---ANAIRKGDGTKIRL 400
Query: 419 RYLKKSSD-------HHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTF 471
+L+ LE+G VERHL DGD V+FNRQPSLHK+SI+ HR+K++P +TF
Sbjct: 401 DFLEDKGKDALREAAEQLEIGDIVERHLADGDIVIFNRQPSLHKLSILAHRVKVLPGATF 460
Query: 472 RLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTL 531
RL+ +V PYNADFDGDEMN+HVPQ + RAE +ELM V ++SP++ P++G +QD +
Sbjct: 461 RLHPAVCPPYNADFDGDEMNLHVPQIEDARAEAIELMGVKDNLISPRTGGPIIGALQDFI 520
Query: 532 LGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTI-LKPRPLWTGKQVFNLIIPKQIN 590
ITK D +K+ NI M +P+P I K P WTGKQ+F+L +PK N
Sbjct: 521 TAAYLITKDDALFDKNEASNIAM-LAGITDPLPEPAIKTKDGPAWTGKQLFSLFLPKDFN 579
Query: 591 LFRTAAWH---ADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTG---SLIHVIWEE 644
A W A K GD V I++GEL+SG + +G SLI I ++
Sbjct: 580 FEGIAKWSAGKAGEAKDPSCLGDGYVLIKEGELISGVIDDNIIGALVEEPESLIDRIAKD 639
Query: 645 VGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKNNVKNLIKQ 704
G A +FL + +L FS G GD I + + I D I K+ V +LI Q
Sbjct: 640 YGEAVAIEFLNKILIIAKKEILHYGFSNGPGDLIIPDEAKQEIEDDIQGMKDEVSDLIDQ 699
Query: 705 AQDK--------SLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVT 756
+ E G E+ E + L+ ARD+AGSSA + N K M
Sbjct: 700 RKITRKITIYKGKEELLRGMKEEEALEADIVNELDKARDKAGSSANDCIDADNAGKIMAK 759
Query: 757 AGSKGSFINISQMTACVGQQNVE--------GKRIPFGFVDRTLPHFTKDDYGPESRGFV 808
G++GS N++Q+ +GQQ + G R+ G+ DR L HF + D P++ GFV
Sbjct: 760 TGARGSMANLAQIAGALGQQKRKTRIGFVLTGGRLHEGYKDRALSHFQEGDDNPDAHGFV 819
Query: 809 ENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSL 868
+N+Y GL EFFFHAMGGREGLID A +T ++GY QRRL A+EDI ++YD TVR+
Sbjct: 820 KNNYREGLNAAEFFFHAMGGREGLIDKARRTEDSGYFQRRLANALEDIRLEYDETVRDPH 879
Query: 869 GDVIQFLYGEDGMD 882
G +IQF +GEDG+D
Sbjct: 880 GHIIQFKFGEDGID 893
Score = 177 bits (449), Expect = 2e-44
Identities = 108/456 (23%), Positives = 191/456 (41%), Gaps = 39/456 (8%)
Query: 974 WNAQKTFKVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRS 1033
+ QK + ++E E E K T FN L
Sbjct: 892 IDPQKLDHGEAFNLE-----RIIEKQKIEDRGKGASKDEIE---ELAKEYTKTFNANLPK 943
Query: 1034 TFASKRVLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTF 1093
A + L + E + E + F ++ V PG+ IG ++AQSI EP TQMTL TF
Sbjct: 944 LLAD--AIHGAELKEDELEAICAEGKEGFEKAKVEPGQAIGIISAQSIAEPGTQMTLRTF 1001
Query: 1094 HYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLR 1153
H AG+ A +VT G+ R E+++ K TP++ ++L E+A + L+ +R
Sbjct: 1002 HAAGIKAMDVTHGLERFIELVDARAKPSTPTMDIYLDDECKEDIEKAIEIARNLKELKVR 1061
Query: 1154 SVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKK 1213
++ + + + PD+ P E+ + KK
Sbjct: 1062 ALIADSAIDN--------------ANEIKLIKPDKRALENGCIPMERFAEIEAALAKGKK 1107
Query: 1214 LSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKI 1273
M + I + + + DK + + + ++ + + +++ +
Sbjct: 1108 FEMELEDDLIILD-------LVEAADRDKPLATLIAIRNKILDKPVKGVPDIERAWVELV 1160
Query: 1274 ESNMLTEMALR--GVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVI 1331
E + E ++ G NL AV+ + +D T +N EI LGIEA R A+ +EL ++
Sbjct: 1161 EKDGRDEWIIQTSGSNLAAVLEMKCIDIANTITNDCFEIAGTLGIEAARNAIFNELASIL 1220
Query: 1332 SFDGSYVNYRHLAILCDTMTYRGHLMAI------TRHGINRNDTGPMMRCSFEETVDILL 1385
G V+ R++ ++ D M RG + AI RHG P+ + +FE T +
Sbjct: 1221 EDQGLEVDNRYIMLVADIMCSRGTIEAIGLQAAGVRHGFAGEKDSPLAKAAFEITTHTIA 1280
Query: 1386 DAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLN 1421
AA+ E + ++G+ + +++GQ PIG+G L ++
Sbjct: 1281 HAALGGEIEKIKGILDALIMGQNIPIGSGKVDLLMD 1316
>gnl|CDD|214767 smart00663, RPOLA_N, RNA polymerase I subunit A N-terminus.
Length = 295
Score = 490 bits (1265), Expect = e-160
Identities = 170/305 (55%), Positives = 216/305 (70%), Gaps = 21/305 (6%)
Query: 242 DWMILQVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISE 291
+WMIL VLP+PPP +RPS DDLTH L II+ N L+R GAP+ II
Sbjct: 1 EWMILTVLPVPPPCLRPSVQLDGGRFAEDDLTHLLRDIIKRNNRLKRLLELGAPSIIIRN 60
Query: 292 FAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSART 351
+LLQ + T DNE G PRA Q+SGRP+KS+ RLK KEGR R NL+GKRVDFSAR+
Sbjct: 61 EKRLLQEAVDTLIDNE--GLPRANQKSGRPLKSLSQRLKGKEGRFRQNLLGKRVDFSARS 118
Query: 352 VITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRD 411
VITPDP + ++++GVP IAL LT+PE VTP NI++L++LV GP GAKYIIR
Sbjct: 119 VITPDPNLKLNEVGVPKEIALELTFPEIVTPLNIDKLRKLVRNGP------NGAKYIIR- 171
Query: 412 DGQRLDLRYLKKS-SDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 470
G++ +L+ KKS +HL++G VERH+ DGD VLFNRQP+LH+MSI HR++++ T
Sbjct: 172 -GKKTNLKLAKKSKIANHLKIGDIVERHVIDGDVVLFNRQPTLHRMSIQAHRVRVLEGKT 230
Query: 471 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 530
RLN V SPYNADFDGDEMN+HVPQS E RAE ELM+VP I+SP++ +P++G +QD
Sbjct: 231 IRLNPLVCSPYNADFDGDEMNLHVPQSLEARAEARELMLVPNNILSPKNGKPIIGPIQDM 290
Query: 531 LLGCR 535
LLG
Sbjct: 291 LLGLY 295
>gnl|CDD|218370 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 1, represents the clamp domain, which a
mobile domain involved in positioning the DNA,
maintenance of the transcription bubble and positioning
of the nascent RNA strand.
Length = 330
Score = 409 bits (1053), Expect = e-130
Identities = 162/344 (47%), Positives = 211/344 (61%), Gaps = 33/344 (9%)
Query: 14 KVRMVQFGILSPDEIRQMSVVQIEHGETTE--RGKPKPGGLSDPRLGTIDRKMKCETCTA 71
K++ +QFGI SP+EIR+ SV ++ ET KP+PGGL D R+GTI +K CETC
Sbjct: 3 KIKEIQFGIASPEEIRKWSVGEVTKPETYNYGSLKPEPGGLLDERMGTIKKKSICETCGV 62
Query: 72 NMAECPGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDDHKF----KQALKI 127
+ ECPGHFGH+ELAKP+FHIGF K +LSI+R VC CS +L +E F K
Sbjct: 63 EVTECPGHFGHIELAKPVFHIGFFKKILSILRCVCKLCSSLLLNESVKYFFLKVVIDPKG 122
Query: 128 RNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKGGCGAQQPKLTIEG-MKMI 186
+N K RLKKI + CK K+ C E K GCG QPK++ +G +
Sbjct: 123 KNSKKRLKKINNLCKKKSICSKCGED--------NGGLKAFEGCGKYQPKISKDGAEAIK 174
Query: 187 AEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDEDCQLLGLNPKYARPDWMIL 246
A K + ++ + E+ + L E+VL + K+IS ED ++LG NP RP+WMIL
Sbjct: 175 ALLK--NIEIEELK------EKLRKLNPEKVLQIFKKISKEDEEILGFNPSGNRPEWMIL 226
Query: 247 QVLPIPPPPVRPS----------DDLTHQLAMIIRHNENLRRQERNGAPAHIISEFAQLL 296
VLP+PPP +RPS DDLTH+L II+ N L++ GAP+HII E +LL
Sbjct: 227 TVLPVPPPCIRPSVQLDGGRFAEDDLTHKLRDIIKRNNRLKKMLEEGAPSHIIREEKRLL 286
Query: 297 QFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNL 340
Q H+AT FDN++PGQP A Q+SGRP+KSI RLK KEGR RGNL
Sbjct: 287 QEHVATLFDNDIPGQPPALQKSGRPLKSISQRLKGKEGRFRGNL 330
>gnl|CDD|147266 pfam04998, RNA_pol_Rpb1_5, RNA polymerase Rpb1, domain 5. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase compared
to three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). This domain, domain 5,
represents the discontinuous cleft domain that is
required to from the central cleft or channel where the
DNA is bound.
Length = 447
Score = 348 bits (894), Expect = e-106
Identities = 142/378 (37%), Positives = 203/378 (53%), Gaps = 19/378 (5%)
Query: 1000 DKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEIE 1059
KL+++ K+ + L + +TL F ILLRS SKRV E +A +
Sbjct: 85 LKLEKKFKIDLNDVLLLLSEFSLSTLLFEILLRSGIESKRVRSELTCNSKAGVCFLCYGR 144
Query: 1060 SRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKK 1119
++ +SLV PGE +G +AAQSIGEP TQMTLNTFH+AGV++KNVTLGVPRL+EIINVAK
Sbjct: 145 DKYRRSLVEPGEAVGIIAAQSIGEPGTQMTLNTFHFAGVASKNVTLGVPRLKEIINVAKN 204
Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFV 1179
K P ++V L + S K R K + L+ VT ++YD D T+I++D +V
Sbjct: 205 NKKPVITVLLIKNIVSDKARVKKQREEKTLLLLKKVTIIIVIYYDDDSESTVIKKDRIWV 264
Query: 1180 KSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFNDDN 1239
+Y+ +P+E E+++ ++ I + K A EK +E + L
Sbjct: 265 LAYFVIPEEVA--EEVALAIIIIGKRKSRKRKKNNLGVAKDEKGLEEEELLLLN------ 316
Query: 1240 ADKLILRIRIMNDEAPKGELND--ESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHE-D 1296
IL + L D + E + TE G NL AVM +
Sbjct: 317 ---KILLVIPGIKVKYGVILTDGRVDPHTILEKLGKEWLLKTE----GNNLQAVMRLQGV 369
Query: 1297 VDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1356
+D +T SN + E+++ LGIEA R ++L E+R V FDG YVN RHLA+L D MT++G L
Sbjct: 370 IDNDKTYSNDIREMLKKLGIEAARDSILLEIRNVFKFDGIYVNRRHLALLADLMTFKGEL 429
Query: 1357 MAITRHGINRNDT-GPMM 1373
+ ITR G+NR + +M
Sbjct: 430 LGITRAGLNREKSSFILM 447
Score = 179 bits (457), Expect = 2e-48
Identities = 64/124 (51%), Positives = 84/124 (67%), Gaps = 4/124 (3%)
Query: 815 GLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQF 874
GLTPQEFFFH MGGREGLIDTAVKT+ETGY+QRRLVKA+ED++V+YD TVRNS G+++QF
Sbjct: 1 GLTPQEFFFHTMGGREGLIDTAVKTAETGYLQRRLVKALEDLVVQYDDTVRNSGGEIVQF 60
Query: 875 LYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRF----EMDEENWNPNYMLQEYIDDLKTI 930
LYGEDG+D + IE Q +++ + +K F+ + + L I I
Sbjct: 61 LYGEDGLDPLKIEGQGRFTIEDSDLKLEKKFKIDLNDVLLLLSEFSLSTLLFEILLRSGI 120
Query: 931 KELR 934
+ R
Sbjct: 121 ESKR 124
>gnl|CDD|218368 pfam04992, RNA_pol_Rpb1_6, RNA polymerase Rpb1, domain 6. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase compared
to three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). This domain, domain 6,
represents a mobile module of the RNA polymerase. Domain
6 forms part of the shelf module. This family appears to
be specific to the largest subunit of RNA polymerase II.
Length = 187
Score = 317 bits (815), Expect = 1e-99
Identities = 97/187 (51%), Positives = 135/187 (72%), Gaps = 2/187 (1%)
Query: 881 MDSVWIESQTLDSLKMKKSEFDKAFRFEM--DEENWNPNYMLQEYIDDLKTIKELRDVFD 938
MD ++E Q LD+LK+ + F+K +R ++ +E + P + ++ + +L E++ + D
Sbjct: 1 MDGAFVEKQKLDTLKLSDAAFEKKYRVDLMDPDEGFLPGVLDEDVVKELLGDAEVQKLLD 60
Query: 939 AEVQKLEADRYQLATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEA 998
E ++L DR L EI GDS WPLPVNL+R+IWNAQK F +D R+PSD+HP+ V+E
Sbjct: 61 EEYEQLLEDRRLLREEIFPDGDSKWPLPVNLQRIIWNAQKIFHIDRRKPSDLHPVYVIEG 120
Query: 999 VDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEHRLTREAFEWVIGEI 1058
V +L +RL VV G+DPLS EAQ+NATL F ILLRST ASKRVL+E+RL +EAF+WV+GEI
Sbjct: 121 VRELLDRLVVVRGDDPLSKEAQENATLLFKILLRSTLASKRVLEEYRLNKEAFDWVLGEI 180
Query: 1059 ESRFLQS 1065
ESRF Q+
Sbjct: 181 ESRFNQA 187
>gnl|CDD|216030 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 2, contains the active site. The
invariant motif -NADFDGD- binds the active site
magnesium ion.
Length = 165
Score = 291 bits (747), Expect = 7e-91
Identities = 100/169 (59%), Positives = 122/169 (72%), Gaps = 4/169 (2%)
Query: 342 GKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPG 401
GKRVDFS R+VITPDP + +D++GVP +AL LT PE VT NI++L++LV GP+ PPG
Sbjct: 1 GKRVDFSGRSVITPDPNLKLDEVGVPIEMALELTKPEIVTKLNIKKLRKLVSNGPNVPPG 60
Query: 402 KTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGH 461
AKYI R G + DL Y K+ + L G V RH+ DGD VL NRQP+LH+MSIM H
Sbjct: 61 ---AKYIKRIKGAKRDLEYKKRIAIE-LWYGDIVLRHVIDGDVVLLNRQPTLHRMSIMAH 116
Query: 462 RIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMV 510
R +++ T RLN SV SPYNADFDGDEMN+HVPQS E RAE ELM+V
Sbjct: 117 RPRVLEGKTIRLNPSVCSPYNADFDGDEMNLHVPQSEEARAEARELMLV 165
>gnl|CDD|235277 PRK04309, PRK04309, DNA-directed RNA polymerase subunit A'';
Validated.
Length = 383
Score = 283 bits (727), Expect = 5e-85
Identities = 150/403 (37%), Positives = 213/403 (52%), Gaps = 77/403 (19%)
Query: 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
L+E +LT E E +I E+ +L+SLV PGE +G VAAQSIGEP TQMT+ TFHYAGV+
Sbjct: 30 LEERKLTEEEVEEIIEEVVREYLRSLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVAE 89
Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATE 1160
NVTLG+PRL EI++ K+ TP ++++LK +E+A+ V +E TTL ++ +
Sbjct: 90 INVTLGLPRLIEIVDARKEPSTPMMTIYLKDEYAYDREKAEEVARKIEATTLENLAKDIS 149
Query: 1161 VWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVA 1220
V D M TII IEL+ EM+ D+ L++ V
Sbjct: 150 V--DLANM-TII-----------------------------IELDEEMLEDRGLTVDDVK 177
Query: 1221 EKINQEF-------DDDLTCIFNDDNADKL------ILRIRIMNDEAPKGELNDESAEDD 1267
E I ++ + L + + +L I I+I KG
Sbjct: 178 EAIEKKKGGEVEIEGNTLIISPKEPSYRELRKLAEKIRNIKI------KG---------- 221
Query: 1268 VFLKKI----------ESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIE 1317
+K I E + TE G NL V+ E VDA RTT+N++ EI EVLGIE
Sbjct: 222 --IKGIKRVIIRKEGDEYVIYTE----GSNLKEVLKVEGVDATRTTTNNIHEIEEVLGIE 275
Query: 1318 AVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
A R A+++E++ + G V+ RH+ ++ D MT+ G + I RHG++ + R +F
Sbjct: 276 AARNAIIEEIKNTLEEQGLDVDIRHIMLVADMMTWDGEVRQIGRHGVSGEKASVLARAAF 335
Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYL 1420
E TV LLDAAV E D L+GVTENI++GQ P+GTGD L +
Sbjct: 336 EVTVKHLLDAAVRGEVDELKGVTENIIVGQPIPLGTGDVELTM 378
>gnl|CDD|132725 cd06528, RNAP_A'', A'' subunit of Archaeal RNA Polymerase (RNAP).
Archaeal RNA polymerase (RNAP), like bacterial RNAP, is a
large multi-subunit complex responsible for the synthesis
of all RNAs in the cell. The relative positioning of the
RNAP core is highly conserved between archaeal RNAP and
the three classes of eukaryotic RNAPs. In archaea, the
largest subunit is split into two polypeptides, A' and
A'', which are encoded by separate genes in an operon.
Sequence alignments reveal that the archaeal A'' subunit
corresponds to the C-terminal one-third of the RNAPII
largest subunit (Rpb1). In subunit A'', several loops in
the jaw domain are shorter. The RNAPII Rpb1 interacts
with the second-largest subunit (Rpb2) to form the DNA
entry and RNA exit channels in addition to the catalytic
center of RNA synthesis.
Length = 363
Score = 281 bits (720), Expect = 2e-84
Identities = 144/394 (36%), Positives = 212/394 (53%), Gaps = 53/394 (13%)
Query: 1040 VLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1099
VLKEH LT E +I E+ +L+SL+ PGE +G VAAQSIGEP TQMTL TFHYAGV+
Sbjct: 10 VLKEHGLTLSEAEEIIKEVLREYLRSLIEPGEAVGIVAAQSIGEPGTQMTLRTFHYAGVA 69
Query: 1100 AKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEAT 1159
NVTLG+PRL EI++ K+ TP+++++L+ +E+A+ V +E TTL ++ E
Sbjct: 70 EINVTLGLPRLIEIVDARKEPSTPTMTIYLEEEYKYDREKAEEVARKIEETTLENLAEDI 129
Query: 1160 EVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAV 1219
+ D M I IEL+ EM+ D+ +++ V
Sbjct: 130 SI--DLFNM-RIT-----------------------------IELDEEMLEDRGITVDDV 157
Query: 1220 AEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVF------LKKI 1273
+ I + + + + ++L+ +E EL + + +K I
Sbjct: 158 LKAIEKLK---KGKVGEEGDVTLIVLKA----EEPSIKEL--RKLAEKILNTKIKGIKGI 208
Query: 1274 ESNML----TEMAL--RGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDEL 1327
+ ++ E + G NL AV+ E VD RTT+N++ EI EVLGIEA R A+++E+
Sbjct: 209 KRVIVRKEEDEYVIYTEGSNLKAVLKVEGVDPTRTTTNNIHEIEEVLGIEAARNAIINEI 268
Query: 1328 RVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDA 1387
+ + G V+ RH+ ++ D MTY G + I RHGI + R +FE TV LLDA
Sbjct: 269 KRTLEEQGLDVDIRHIMLVADIMTYDGEVRQIGRHGIAGEKPSVLARAAFEVTVKHLLDA 328
Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLN 1421
AV E D LRGV ENI++GQ P+GTGD L ++
Sbjct: 329 AVRGEVDELRGVIENIIVGQPIPLGTGDVELTMD 362
>gnl|CDD|233842 TIGR02389, RNA_pol_rpoA2, DNA-directed RNA polymerase, subunit A''.
This family consists of the archaeal A'' subunit of the
DNA-directed RNA polymerase. The example from
Methanocaldococcus jannaschii contains an intein
[Transcription, DNA-dependent RNA polymerase].
Length = 367
Score = 266 bits (681), Expect = 3e-79
Identities = 135/392 (34%), Positives = 200/392 (51%), Gaps = 54/392 (13%)
Query: 1040 VLKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1099
V K +E + +I +E +L+SL+ PGE +G VAAQSIGEP TQMT+ TFHYAGV+
Sbjct: 14 VKKREISDKEELDEIIKRVEEEYLRSLIDPGEAVGIVAAQSIGEPGTQMTMRTFHYAGVA 73
Query: 1100 AKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEAT 1159
NVTLG+PRL EI++ K TPS++++L+ +E+A+ V +E T L V +
Sbjct: 74 ELNVTLGLPRLIEIVDARKTPSTPSMTIYLEDEYEKDREKAEEVAKKIEATKLEDVAKDI 133
Query: 1160 EVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAV 1219
+ D+A + IEL+ E + ++ +++ V
Sbjct: 134 SI---------------------------DLADMTV-----IIELDEEQLKERGITVDDV 161
Query: 1220 AEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKI------ 1273
+ I + L + D D + I+ + K + ++ +K I
Sbjct: 162 EKAIKKAK---LGKVIEIDM-DGNTITIKP-PKPSLKELRKLKEKIKNLHIKGIKGIKRV 216
Query: 1274 -------ESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDE 1326
E + TE G NL V+ E VD RTT+N + EI EVLGIEA R A+++E
Sbjct: 217 VIRKEGDEYVIYTE----GSNLKEVLKLEGVDKTRTTTNDIHEIAEVLGIEAARNAIIEE 272
Query: 1327 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1386
++ + G V+ RHL ++ D MT+ G + I RHGI+ + R +FE TV LLD
Sbjct: 273 IKRTLEEQGLDVDIRHLMLVADLMTWDGEVRQIGRHGISGEKASVLARAAFEVTVKHLLD 332
Query: 1387 AAVFAESDYLRGVTENIMLGQLAPIGTGDCSL 1418
AA+ E D L GV ENI++GQ P+GTGD L
Sbjct: 333 AAIRGEVDELAGVIENIIVGQPIPLGTGDVDL 364
>gnl|CDD|218366 pfam04990, RNA_pol_Rpb1_7, RNA polymerase Rpb1, domain 7. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase compared
to three in eukaryotes (not including mitochondrial. and
chloroplast polymerases). This domain, domain 7,
represents a mobile module of the RNA polymerase. Domain
7 forms a substantial interaction with the lobe domain of
Rpb2 (pfam04561).
Length = 135
Score = 238 bits (609), Expect = 8e-73
Identities = 81/135 (60%), Positives = 109/135 (80%)
Query: 1150 TTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMM 1209
TTLRSVT +TE++YDPDP T+IEED E+V+SY+E+PDED P ++SPWLLR+EL+RE M
Sbjct: 1 TTLRSVTASTEIYYDPDPRNTVIEEDREWVESYFEIPDEDDDPSRLSPWLLRLELDREKM 60
Query: 1210 VDKKLSMAAVAEKINQEFDDDLTCIFNDDNADKLILRIRIMNDEAPKGELNDESAEDDVF 1269
DKKL+M +A+KI QEF DDL I++DDNA+KL++RIR+ +DE K + + EDDVF
Sbjct: 61 TDKKLTMKDIAQKIKQEFGDDLHVIYSDDNAEKLVIRIRVKDDEGEKEDSVGDEDEDDVF 120
Query: 1270 LKKIESNMLTEMALR 1284
LK++ESNML+ + LR
Sbjct: 121 LKRLESNMLSSLTLR 135
>gnl|CDD|132723 cd02736, RNAP_III_Rpc1_C, Largest subunit (Rpc1) of Eukaryotic RNA
polymerase III (RNAP III), C-terminal domain. Eukaryotic
RNA polymerase III (RNAP III) is a large multi-subunit
complex responsible for the synthesis of tRNAs, 5SrRNA,
Alu-RNA, U6 snRNA, among others. Rpc1 is also known as
C160 in yeast. Structure studies suggest that different
RNA polymerase complexes share a similar crab-claw-shape
structure. The C-terminal domain of Rpb1, the largest
subunit of RNAP II, makes up part of the foot and jaw
structures of RNAP II. The similarity between this domain
and the C-terminal domain of Rpb1, its counterpart in
RNAP II, suggests a similar functional and structural
role.
Length = 300
Score = 244 bits (626), Expect = 9e-73
Identities = 114/357 (31%), Positives = 184/357 (51%), Gaps = 62/357 (17%)
Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKI 1120
+++++ V PG +G +AAQSIGEP TQMTL TFH+AGV++ N+TLGVPR++EIIN +K I
Sbjct: 1 KYMRAKVEPGTAVGAIAAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKNI 60
Query: 1121 KTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVK 1180
TP ++ L+ + ++ A+ V+ +E T L V E Y PD
Sbjct: 61 STPIITAKLEN--DRDEKSARIVKGRIEKTYLGEVASYIEEVYSPD-------------- 104
Query: 1181 SYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVAEKINQ---EFDDDLTCIFND 1237
Y + I+L+++++ +LS + + + + D + +
Sbjct: 105 DCY----------------ILIKLDKKIIEKLQLSKSNLYFLLQSLKRKLPDVVVSGIPE 148
Query: 1238 DNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMCHEDV 1297
R I N + KG+ ++ + G L AVM V
Sbjct: 149 VK------RAVI-NKDKKKGKY--------------------KLLVEGYGLRAVMNTPGV 181
Query: 1298 DARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLM 1357
RTTSNH++E+ +VLGIEA R +++E++ + G ++ RH+ +L D MT++G ++
Sbjct: 182 IGTRTTSNHIMEVEKVLGIEAARSTIINEIQYTMKSHGMSIDPRHIMLLADLMTFKGEVL 241
Query: 1358 AITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
ITR GI + +M SFE+T D L +AA+ D + GV+E I++G+ PIGTG
Sbjct: 242 GITRFGIAKMKESVLMLASFEKTTDHLFNAALHGRKDSIEGVSECIIMGKPMPIGTG 298
>gnl|CDD|233840 TIGR02386, rpoC_TIGR, DNA-directed RNA polymerase, beta' subunit,
predominant form. Bacteria have a single DNA-directed
RNA polymerase, with required subunits that include
alpha, beta, and beta-prime. This model describes the
predominant architecture of the beta-prime subunit in
most bacteria. This model excludes from among the
bacterial mostly sequences from the cyanobacteria, where
RpoC is replaced by two tandem genes homologous to it
but also encoding an additional domain [Transcription,
DNA-dependent RNA polymerase].
Length = 1140
Score = 250 bits (640), Expect = 1e-67
Identities = 237/907 (26%), Positives = 379/907 (41%), Gaps = 197/907 (21%)
Query: 21 GILSPDEIRQMSVVQIEHGETTERG--KPKPGGLSDPRL-GTID---------RKMK--- 65
I SPD IR S +++ ET KP+ GL ++ G +K++
Sbjct: 5 SIASPDTIRNWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTKDWECYCGKYKKIRYKG 64
Query: 66 --CETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLSIM-----------RSVCFNC 109
CE C + E GH+ELA P+ HI + K + S + SV +
Sbjct: 65 VVCERCGVEVTESKVRRERMGHIELAAPVAHIWYFKGLPSRIGLLLDITAKELESVLYFE 124
Query: 110 SKILADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPLKKNKG 169
+ ++ D D K + ++ + + + K GD
Sbjct: 125 NYVVLDPGDTKLDKK-EVLD----ETEYREVLKRY-----GDGFRA-------------- 160
Query: 170 GCGAQQPKLTIEGM---KMIAEYKAQ-RKKNDDQEQLPEPVERKQTLTAERVLGVLKRIS 225
G GA+ K +E + K I E K Q R+ DQ+ RK+ L ++ K
Sbjct: 161 GMGAEAIKELLEKIDLDKEIEELKIQLRESKSDQK-------RKKLLKRLEIVEAFKDSG 213
Query: 226 DEDCQLLGLNPKYARPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNEN 275
RP+WM+L V+P+ PP +RP + DL +I N
Sbjct: 214 -------------NRPEWMVLDVIPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNR 260
Query: 276 LRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGR 335
L+R GAP I+ ++LQ + FDN G+P ++ RP+KS+ LK K+GR
Sbjct: 261 LKRLLELGAPEIIVRNEKRMLQEAVDALFDNGRRGKP-VVGKNNRPLKSLSDMLKGKQGR 319
Query: 336 IRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYG 395
R NL+GKRVD+S R+VI P + + Q G+P +AL L P+ I+RL +
Sbjct: 320 FRQNLLGKRVDYSGRSVIVVGPELKMYQCGLPKKMALEL-----FKPFIIKRLIDR---- 370
Query: 396 PHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHK 455
K+ K I ++D + D+ LE K E VL NR P+LH+
Sbjct: 371 ELAANIKSAKKMIEQEDPEVWDV----------LEDVIK-EHP------VLLNRAPTLHR 413
Query: 456 MSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIV 515
+ I ++ RL+ V + +NADFDGD+M +HVP S E +AE LM+ I+
Sbjct: 414 LGIQAFEPVLVEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSPEAQAEARALMLASNNIL 473
Query: 516 SPQSNRPVMGIVQDTLLGCRKIT--KRDTFIEKDVFMNI---LMWWEDFDGKVPQPTILK 570
+P+ +P++ QD +LG +T K E +F N+ + ++ +GKV ++
Sbjct: 474 NPKDGKPIVTPSQDMVLGLYYLTTEKPGAKGEGKIFSNVDEAIRAYD--NGKVHLHALIG 531
Query: 571 PRP----LWT--GKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGT 624
R L T G+ +FN I+P+ I E LS
Sbjct: 532 VRTSGEILETTVGRVIFNEILPEGFPY-----------------------INDNEPLS-- 566
Query: 625 LCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTM 684
KK + SLI +++E G + + L + L + ++ +I D + +
Sbjct: 567 --KKEI----SSLIDLLYEVHGIEETAEMLDKIKALGFKYATKSGTTISASDIVVPDEKY 620
Query: 685 ETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKS 744
E + + A V + K + E KV + + +D+ + K
Sbjct: 621 EILKE----ADKEVAKIQKFYNKGLITDEERY-------RKVVSIWSETKDKVTDAMMKL 669
Query: 745 LS----ESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDY 800
L + N + M +G++G NISQ G + + K P G + K
Sbjct: 670 LKKDTYKFNPIFMMADSGARG---NISQFRQLAGMRGLMAK--PSG---DIIELPIK--- 718
Query: 801 GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKY 860
+S+ GLT E+F G R+GL DTA+KT+++GY+ RRLV +D++V+
Sbjct: 719 ---------SSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVVVRE 769
Query: 861 D--GTVR 865
+ GT
Sbjct: 770 EDCGTEE 776
Score = 66.2 bits (162), Expect = 2e-10
Identities = 26/54 (48%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA--KNVTLGVPRLREIINV 1116
LV GE +G +AAQSIGEP TQ+T+ TFH GV+ ++T G+PR++E+
Sbjct: 866 KLVEIGEAVGVIAAQSIGEPGTQLTMRTFHTGGVAGASGDITQGLPRVKELFEA 919
Score = 56.6 bits (137), Expect = 1e-07
Identities = 36/147 (24%), Positives = 64/147 (43%), Gaps = 44/147 (29%)
Query: 1309 EIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHG----- 1363
+++ + GI+AV+ L+ E++ V G +N +H+ ++ M + + IT G
Sbjct: 991 DLLRIKGIQAVQEYLVKEVQKVYRLQGVEINDKHIEVIVRQMLRK---VRITDSGDSNLL 1047
Query: 1364 ----INRN-------------------------------DTGPMMR-CSFEETVDILLDA 1387
I+ + +T + SF+ET +L DA
Sbjct: 1048 PGELIDIHEFNEENRKLLEQGKKPASAIPQLLGITKASLNTESFLSAASFQETTKVLTDA 1107
Query: 1388 AVFAESDYLRGVTENIMLGQLAPIGTG 1414
A+ + DYL G+ EN+++G L P GTG
Sbjct: 1108 AIKGKVDYLLGLKENVIIGNLIPAGTG 1134
>gnl|CDD|237853 PRK14897, PRK14897, unknown domain/DNA-directed RNA polymerase
subunit A'' fusion protein; Provisional.
Length = 509
Score = 229 bits (585), Expect = 1e-64
Identities = 125/445 (28%), Positives = 204/445 (45%), Gaps = 49/445 (11%)
Query: 981 KVDPRRPSDMHPMEVVEAVDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRV 1040
+D + E + E + + L +++ +
Sbjct: 98 ILDENMSFSTGELLTAE-EKEYYEENSNEDVLKVIDDVKKLGFRLPPSVIEEIA----KA 152
Query: 1041 LKEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSA 1100
+K+ L+ + +E ++ I + ++ V P E +G VAAQSIGEP TQMT+ TFHYAGV+
Sbjct: 153 MKKKELSDDEYEEILRRIREEYERARVDPYEAVGIVAAQSIGEPGTQMTMRTFHYAGVAE 212
Query: 1101 KNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATE 1160
NVTLG+PRL EI++ KK TP+++++LK +E+ + V +E TTL V
Sbjct: 213 MNVTLGLPRLIEIVDARKKPSTPTMTIYLKKDYREDEEKVREVAKKIENTTLIDVA---- 268
Query: 1161 VWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMVDKKLSMAAVA 1220
+ + EM + +EL+ E M ++ + +
Sbjct: 269 ----------------DIITDIAEMS-------------VVVELDEEKMKERLIEYDDIL 299
Query: 1221 EKINQ------EFDDDLTCI-FNDDNADKLILRIRIMNDEAPKGELNDESAEDDVFLKKI 1273
I++ E DD + + + KL ++ ++ + +K
Sbjct: 300 AAISKLTFKTVEIDDGIIRLKPQQPSFKKL----YLLAEKVKSLTIKGIKGIKRAIARKE 355
Query: 1274 ESNMLTEMALRGVNLLAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISF 1333
+ +G NL V+ ++VD RT +N +IEI VLGIEA R A++ E + +
Sbjct: 356 NDERRWVIYTQGSNLKDVLEIDEVDPTRTYTNDIIEIATVLGIEAARNAIIHEAKRTLQE 415
Query: 1334 DGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAES 1393
G V+ RH+ ++ D MT+ G + AI RHGI+ + + R +FE T LL A + E
Sbjct: 416 QGLNVDIRHIMLVADMMTFDGSVKAIGRHGISGEKSSVLARAAFEITGKHLLRAGILGEV 475
Query: 1394 DYLRGVTENIMLGQLAPIGTGDCSL 1418
D L GV ENI++GQ +GTG SL
Sbjct: 476 DKLAGVAENIIVGQPITLGTGAVSL 500
>gnl|CDD|132722 cd02735, RNAP_I_Rpa1_C, Largest subunit (Rpa1) of Eukaryotic RNA
polymerase I (RNAP I), C-terminal domain. RNA polymerase
I (RNAP I) is a multi-subunit protein complex responsible
for the synthesis of rRNA precursor. It consists of at
least 14 different subunits, and the largest one is
homologous to subunit Rpb1 of yeast RNAP II and subunit
beta' of bacterial RNAP. Rpa1 is also known as Rpa190 in
yeast. Structure studies suggest that different RNAP
complexes share a similar crab-claw-shape structure. The
C-terminal domain of Rpb1, the largest subunit of RNAP
II, makes up part of the foot and jaw structures of RNAP
II. The similarity between this domain and the C-terminal
domain of Rpb1, its counterpart in RNAP II, suggests a
similar functional and structural role.
Length = 309
Score = 217 bits (556), Expect = 4e-63
Identities = 119/367 (32%), Positives = 176/367 (47%), Gaps = 66/367 (17%)
Query: 1061 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA-KK 1119
++++SLV PGE +G +AAQSIGEP+TQMTLNTFH+AG NVTLG+PRLREI+ A K
Sbjct: 1 KYMRSLVEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMTASKN 60
Query: 1120 IKTPSLSVFLKPGVNSTKERAKNVQCALEYTTLRSVTEATEVWYDPDPMGTIIEEDVE-- 1177
IKTPS+++ LK G + ERA+ ++ L TL V E EV I + +E
Sbjct: 61 IKTPSMTLPLKNGKS--AERAETLKKRLSRVTLSDVVEKVEVTE--------ILKTIERV 110
Query: 1178 FVKSYYEMPDEDIAPEKISPWL-LRIELNREMMVDKKLSMAAVAEKINQEFDDDLTCIFN 1236
F K + W + I+L KL + ++ EK+
Sbjct: 111 FKKLLGK-------------WCEVTIKLPLSS---PKLLLLSIVEKL------------- 141
Query: 1237 DDNADKLILRIRIMNDEAP---KGELNDESAEDDVFLKKIESNMLTEMALRGVNLLAVMC 1293
A K ++R E P + + +E I GVNL A+
Sbjct: 142 ---ARKAVIR------EIPGITRCFVVEEDKGGKTKYLVIT---------EGVNLAALWK 183
Query: 1294 HED-VDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTY 1352
D +D R +N + ++ GIEA RRA++ E+ V G V+ RHL+++ D MT+
Sbjct: 184 FSDILDVNRIYTNDIHAMLNTYGIEAARRAIVKEISNVFKVYGIAVDPRHLSLIADYMTF 243
Query: 1353 RGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIG 1412
G R G+ + T P+ + SFE T+ L A + + D L + +++G+ G
Sbjct: 244 EGGYRPFNRIGMESS-TSPLQKMSFETTLAFLKKATLNGDIDNLSSPSSRLVVGKPVNGG 302
Query: 1413 TGDCSLY 1419
TG L
Sbjct: 303 TGLFDLL 309
>gnl|CDD|218361 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 3, represents the pore domain. The 3' end
of RNA is positioned close to this domain. The pore
delimited by this domain is thought to act as a channel
through which nucleotides enter the active site and/or
where the 3' end of the RNA may be extruded during
back-tracking.
Length = 158
Score = 193 bits (494), Expect = 4e-57
Identities = 69/166 (41%), Positives = 99/166 (59%), Gaps = 9/166 (5%)
Query: 513 CIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPQPTILKP- 571
I+SPQ+ +P++G QD +LG +T+RDTF +++ M +LM+ P P ILKP
Sbjct: 1 NILSPQNGKPIIGPSQDMVLGLYLLTRRDTFFDREEVMQLLMYGIVL----PHPAILKPI 56
Query: 572 RPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLG 631
+PLWTGKQ F+ ++P +IN + + L D+ V I GEL+SG + KK G
Sbjct: 57 KPLWTGKQTFSRLLPNEINPKGKPKTNEE----TLCENDSYVLINNGELISGVIDKKLGG 112
Query: 632 TSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDT 677
S GSLIH+I++E GP+ KFL Q L +L ++ FSIGI D
Sbjct: 113 KSLGSLIHIIYKEYGPEETVKFLDRLQKLGFRYLTKSGFSIGIDDI 158
>gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Reviewed.
Length = 2890
Score = 190 bits (483), Expect = 5e-48
Identities = 172/646 (26%), Positives = 276/646 (42%), Gaps = 120/646 (18%)
Query: 240 RPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
RP+WM+L VLP+ PP +RP D+ +I N+ L+R GAP I+
Sbjct: 1622 RPEWMMLTVLPVLPPDLRPLVALDGGKFAVSDVNELYRRVINRNQRLKRLMELGAPEIIV 1681
Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSG--RPIKSICSRLKAKEGRIRGNLMGKRVDF 347
++LQ + FDN G+ + RP+KS+ +K K+GR R NL+GKRVDF
Sbjct: 1682 RNEKRMLQEAVDVLFDN---GRSTNAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDF 1738
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
S R+VI P + +D+ G+P ++AL E P+ + +L+E
Sbjct: 1739 SGRSVIVVGPNLKMDECGLPKNMAL-----ELFKPHLLSKLEE----------------- 1776
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
G L+ K+ + ++ + + +G VL NR P+LHK SI K++
Sbjct: 1777 ----RGYATTLKQAKRMIEQKSNEVWECLQEITEGYPVLLNRAPTLHKQSIQAFHPKLID 1832
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+L+ V S +NADFDGD+M +HVP S E AE LM+ I+ P S + V
Sbjct: 1833 GKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAIAECKVLMLSSMNILLPASGKAVAIPS 1892
Query: 528 QDTLLGCRKIT--KRDTFIEKDVFMN---ILMWWE----DFDGKVPQPTILKPRPLWT-- 576
QD +LG ++ K E +F + I+ + D K+ + + + T
Sbjct: 1893 QDMVLGLYYLSLEKSGVKGEHKLFSSVNEIITAIDTKELDIHAKI--RVLDQGNIIATSA 1950
Query: 577 GKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLCKKTLGTSTGS 636
G+ + I+P + T W+ + KK +G
Sbjct: 1951 GRMIIKSILP---DFIPTDLWNR------------------------PMKKKDIGV---- 1979
Query: 637 LIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMETINDTISKAKN 696
L+ + + G FL + + L + A GI ++ D T + + KAK
Sbjct: 1980 LVDYVHKVGGIGITATFLDNLKTLG----FRYATKAGISISMEDIITPKDKQKMVEKAKV 2035
Query: 697 NVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSES----NNLK 752
VK I+Q D+ L + R NK+ D+ ++++ N++
Sbjct: 2036 EVKK-IQQQYDQGLLTDQERY------NKIIDTWTEVNDKMSKEMMTAIAKDKEGFNSIY 2088
Query: 753 AMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSY 812
M +G++GS I Q++A G P G + T P F E
Sbjct: 2089 MMADSGARGSAAQIRQLSAMRGLMTK-----PDGSIIET----------PIISNFKE--- 2130
Query: 813 LRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV 858
GL E+F G R+GL DTA+KT+ GY+ R+L+ +++ V
Sbjct: 2131 --GLNVLEYFNSTHGARKGLADTALKTANAGYLTRKLIDVSQNVKV 2174
Score = 54.2 bits (130), Expect = 7e-07
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKN 1102
+ PGE +G VAAQSIGEP TQ+TL TFH G ++++
Sbjct: 2273 MSYPGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASRS 2309
Score = 50.3 bits (120), Expect = 1e-05
Identities = 33/128 (25%), Positives = 65/128 (50%), Gaps = 18/128 (14%)
Query: 1316 IEAVRRALLDELRVVISFDGSYV-------------NYRHLAILCDTMTYRGHLMAITRH 1362
IE + +L ++R++ S D ++ N R +A+ + L+ ITR
Sbjct: 2763 IEIIVSQMLRQVRILDSGDSKFIEGDLVSKKLFKEENARVIALKGEPAIAEPVLLGITRA 2822
Query: 1363 GINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLND 1422
I + + SF+ET +L +A++ + D+L + EN++LG++ P+GTG +Y N
Sbjct: 2823 AIGSDSI--ISAASFQETTKVLTEASIAMKKDFLEDLKENVVLGRMIPVGTG---MYKNK 2877
Query: 1423 EMLKNAIE 1430
+++ +E
Sbjct: 2878 KIVLRTLE 2885
>gnl|CDD|218372 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 4, represents the funnel domain. The
funnel contain the binding site for some elongation
factors.
Length = 108
Score = 164 bits (416), Expect = 4e-47
Identities = 64/108 (59%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 702 IKQAQDKS-LEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSK 760
I A+ LE G T+ E+FE +N +LN ARD AG+ A KSL +N++ M +G+K
Sbjct: 1 ITDAERYGKLEDIWGMTLEETFEALINNILNKARDPAGNIASKSLDPNNSIYMMADSGAK 60
Query: 761 GSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFV 808
GS INISQ+ C GQQNVEGKRIPFGF RTLPHF KDD GPESRGFV
Sbjct: 61 GSIINISQIAGCRGQQNVEGKRIPFGFSGRTLPHFKKDDEGPESRGFV 108
>gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Provisional.
Length = 2836
Score = 179 bits (454), Expect = 1e-44
Identities = 185/669 (27%), Positives = 284/669 (42%), Gaps = 132/669 (19%)
Query: 240 RPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNENLRRQERNGAPAHII 289
RP+WMIL +PI PP +RP DL H II N LR+ P +I
Sbjct: 1665 RPEWMILTTIPILPPDLRPLVSLESGRPAVSDLNHHYRTIINRNNRLRKLLSLNPPEIMI 1724
Query: 290 SEFAQLLQFHIATYFDNELPGQPRATQRSGRP--IKSICSRLKAKEGRIRGNLMGKRVDF 347
++LQ + + FDN + ++G KSI LK K+GR R NL+GKRVD+
Sbjct: 1725 RNEKRMLQEAVDSLFDNSR--RNALVNKAGAVGYKKSISDMLKGKQGRFRQNLLGKRVDY 1782
Query: 348 SARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 407
S R+VI PT+ ++Q G+P +AL E P+ +LK YG P K +K
Sbjct: 1783 SGRSVIVVGPTLKLNQCGLPKRMAL-----ELFKPFVYSKLKM---YG-MAPTIKFASKL 1833
Query: 408 IIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMP 467
I + + D+ L ++ H VL NR P+LH++ I ++
Sbjct: 1834 IRAEKPEVWDM------------LEEVIKEHP-----VLLNRAPTLHRLGIQAFEPILIE 1876
Query: 468 YSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIV 527
+L+ V + +NADFDGD+M +HVP S E + E LMM ++SP + RP++
Sbjct: 1877 GKAIQLHPLVCTAFNADFDGDQMAVHVPISLEAQLEARVLMMSTNNVLSPSNGRPIIVPS 1936
Query: 528 QDTLLGCRKIT----KRD------TFIEKDVFMN-----------ILMWWEDFDGKVPQP 566
+D +LG +T K D F E + ++ M + + G+
Sbjct: 1937 KDIVLGIYYLTLQEPKEDDLPSFGAFCEVEHSLSDGTLHIHSSIKYRMEYINSSGETHYK 1996
Query: 567 TILKPRPLWTGKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKGELLSGTLC 626
TI G+ + I PK NL +L++ L
Sbjct: 1997 TICTT----PGRLILWQIFPKHENL-------------------------GFDLINQVLT 2027
Query: 627 KKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGDTIADAKTMET 686
K + S++ +++ G A F + L+ FS G+ + D ET
Sbjct: 2028 VKEI----TSIVDLVYRNCGQSATVAF---SDKLMVLGFEYATFS-GVSFSRCDMVIPET 2079
Query: 687 INDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFENKVNQVLNTARDEAGSSAQKSL- 745
+ A+ +K Q QD + T E + NKV + D + K++
Sbjct: 2080 KATHVDHARGEIKKFSMQYQDGLI------TRSERY-NKVIDEWSKCTDMIANDMLKAIS 2132
Query: 746 -----SESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFVDRTLPHFTKDDY 800
S+ N++ MV +G++GS SQM G + + K P G + T
Sbjct: 2133 IYDGNSKYNSVYMMVNSGARGS---TSQMKQLAGMRGLMTK--PSGEIIET--------- 2178
Query: 801 GPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED-IMVK 859
P F E GL E+F G R+GL DTA+KT+ +GY+ RRLV ++ I+ K
Sbjct: 2179 -PIISNFRE-----GLNVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVSQNCIVTK 2232
Query: 860 YDGTVRNSL 868
+D +N L
Sbjct: 2233 HDCKTKNGL 2241
Score = 51.9 bits (124), Expect = 3e-06
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 38/146 (26%)
Query: 1307 LIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTM------TYRGHLMAIT 1360
L +I+ VLG+EA+ ++ E++ V G ++ +HL ++ M T G M +
Sbjct: 2638 LHDILRVLGLEALAHYMISEIQQVYRLQGVRIDNKHLEVILKQMLQKVEITDPGDTMYLV 2697
Query: 1361 RHGINR----------NDTG-------PMMR---------------CSFEETVDILLDAA 1388
I++ +++G P+++ SF+ET +L +AA
Sbjct: 2698 GESIDKLEVDRENDAMSNSGKRPAHYLPILQGITRASLETSSFISAASFQETTKVLTEAA 2757
Query: 1389 VFAESDYLRGVTENIMLGQLAPIGTG 1414
+SD L G+ EN+++G+L P GTG
Sbjct: 2758 FCGKSDPLSGLKENVIVGRLIPAGTG 2783
Score = 51.2 bits (122), Expect = 6e-06
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1121
+V+ GE +G +AAQS+GEP TQ+T+ TFH GV +T GV I ++ KIK
Sbjct: 2329 IVSIGEAVGVIAAQSVGEPGTQLTMRTFHIGGV----MTRGVESSNIIASINAKIK 2380
>gnl|CDD|234794 PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta';
Provisional.
Length = 1156
Score = 177 bits (452), Expect = 1e-44
Identities = 202/677 (29%), Positives = 307/677 (45%), Gaps = 165/677 (24%)
Query: 240 RPDWMILQVLPIPPPPVRP-----------SD--DLTHQLAMIIRHNENLRRQERNGAPA 286
+P+WMIL VLP+ PP +RP SD DL ++ I R N L+R GAP
Sbjct: 223 KPEWMILDVLPVIPPDLRPLVQLDGGRFATSDLNDLYRRV--INR-NNRLKRLLELGAPE 279
Query: 287 HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
I+ ++LQ + FDN G+P T + RP+KS+ LK K+GR R NL+GKRVD
Sbjct: 280 IIVRNEKRMLQEAVDALFDNGRRGRP-VTGPNNRPLKSLSDMLKGKQGRFRQNLLGKRVD 338
Query: 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
+S R+VI P + + Q G+P +AL L P +K+LVE G K+ K
Sbjct: 339 YSGRSVIVVGPELKLHQCGLPKKMALELFKPFI--------MKKLVERG-LATTIKSAKK 389
Query: 407 YIIRDDGQRLDLRYLKKSSDHHLELGYKVER-HLNDGDFVLFNRQPSLHKMSIM------ 459
+ R+D + D LE +V + H VL NR P+LH++ I
Sbjct: 390 MVEREDPEVWD----------VLE---EVIKEHP-----VLLNRAPTLHRLGIQAFEPVL 431
Query: 460 --GHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 517
G I++ P L V + +NADFDGD+M +HVP S E +AE LM+ I+SP
Sbjct: 432 IEGKAIQLHP-----L---VCTAFNADFDGDQMAVHVPLSLEAQAEARVLMLSSNNILSP 483
Query: 518 QSNRPVMGIV--QDTLLGCRKITKRDTFIEKD-------VFMNI---LMWWEDFDGKVPQ 565
+ +P+ IV QD +LG +T+ E++ VF + L +E +G+V
Sbjct: 484 ANGKPI--IVPSQDMVLGLYYLTR-----EREGAKGEGMVFSSPEEALRAYE--NGEVDL 534
Query: 566 PTILKPRP-----LWT--GKQVFNLIIPKQINLFRTAAWHADNDKGILTAGDTLVRIEKG 618
+K R + T G+ +FN I+P+ + N L
Sbjct: 535 HARIKVRITSKKLVETTVGRVIFNEILPEGLPF--------INVNKPLK----------- 575
Query: 619 ELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIGD-T 677
KK + +I+ ++ G FL + L + ++ SIGI D
Sbjct: 576 --------KKEI----SKIINEVYRRYGLKETVIFLDKIKDLGFKYATRSGISIGIDDIV 623
Query: 678 IADAKTMETINDTISKAKNNVKNLIKQAQDKSLEPEPGRTMMESFE--NKVNQVLNTARD 735
I K + I I +A+ V + KQ + G ++ E NKV + + A D
Sbjct: 624 IPPEK--KEI---IEEAEKEVAEIEKQYRR-------G--LITDGERYNKVIDIWSKATD 669
Query: 736 EAGSSAQKSLSES----NNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRIPFGFVDR 790
E + K+LS+ N + M +G++GS I Q+ G G+ I
Sbjct: 670 EVAKAMMKNLSKDQESFNPIYMMADSGARGSASQIRQLAGMRGLMAKPSGEIIE------ 723
Query: 791 TLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLV 850
P +++++ GLT E+F G R+GL DTA+KT+++GY+ RRLV
Sbjct: 724 -TP--------------IKSNFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLV 768
Query: 851 KAMEDIMVKYD--GTVR 865
+D++V+ D GT R
Sbjct: 769 DVAQDVIVREDDCGTDR 785
Score = 63.5 bits (156), Expect = 1e-09
Identities = 26/49 (53%), Positives = 35/49 (71%), Gaps = 3/49 (6%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII 1114
LV GE +G +AAQSIGEP TQ+T+ TFH GV ++T G+PR+ E+
Sbjct: 875 LVNIGEAVGVIAAQSIGEPGTQLTMRTFHTGGV---DITGGLPRVAELF 920
Score = 51.2 bits (124), Expect = 5e-06
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
SF+ET +L +AA+ + D LRG+ EN+++G+L P GTG
Sbjct: 1098 SFQETTRVLTEAAIKGKVDPLRGLKENVIIGRLIPAGTG 1136
Score = 40.1 bits (95), Expect = 0.014
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 52/121 (42%)
Query: 18 VQFGILSPDEIRQMSVVQIEHGETTERGKP--------KP--GGLSDPRL-G-TID---- 61
++ G+ SP++IR S +GE KP KP GL R+ G T D
Sbjct: 10 IKIGLASPEKIRSWS-----YGEVK---KPETINYRTLKPERDGLFCERIFGPTKDYECL 61
Query: 62 ----RKMK-----CETCTANMAECPG-----------HFGHLELAKPMFHIGFMKTVLSI 101
++++ CE C G GH+ELA P+ HI F K++ S
Sbjct: 62 CGKYKRVRYKGIICERC--------GVEVTRSKVRRERMGHIELAAPVAHIWFFKSLPSR 113
Query: 102 M 102
+
Sbjct: 114 I 114
>gnl|CDD|237854 PRK14898, PRK14898, DNA-directed RNA polymerase subunit A'';
Provisional.
Length = 858
Score = 173 bits (439), Expect = 8e-44
Identities = 114/349 (32%), Positives = 173/349 (49%), Gaps = 49/349 (14%)
Query: 1086 TQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLKPGVNSTKERAKNVQC 1145
T T+ TFHYAGV+ NVTLG+PR+ EI++ K+ TP ++V LK + +E+A+ V
Sbjct: 541 THNTMRTFHYAGVAEINVTLGLPRMIEIVDARKEPSTPIMTVHLKGEYATDREKAEEVAK 600
Query: 1146 ALEYTTLRSVTEATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELN 1205
+E TL V + + D+ + I ++EL+
Sbjct: 601 KIESLTLGDVATSIAI---------------------------DLWTQSI-----KVELD 628
Query: 1206 REMMVDKKLSMAAVAEKINQEF----DDDLTCIF---NDDNADKLILRIRIMNDEAPKG- 1257
E + D+ L++ +V E I ++ D T ++ + L RI + + KG
Sbjct: 629 EETLADRGLTIESVEEAIEKKLGVKIDRKGTVLYLKPKTPSYKALRKRIPKIKNIVLKGI 688
Query: 1258 -ELNDESAEDDVFLKKIESNMLTEMAL--RGVNLLAVMCHEDVDARRTTSNHLIEIIEVL 1314
+ V +KK E E L +G NL V E VD RTT+N++IEI EVL
Sbjct: 689 PGIER------VLVKKEEHENDEEYVLYTQGSNLREVFKIEGVDTSRTTTNNIIEIQEVL 742
Query: 1315 GIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMR 1374
GIEA R A+++E+ + G V+ RHL ++ D MT G + I RHG+ + R
Sbjct: 743 GIEAARNAIINEMMNTLEQQGLEVDIRHLMLVADIMTADGEVKPIGRHGVAGEKGSVLAR 802
Query: 1375 CSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDE 1423
+FEETV L DAA E D L+GV EN+++G+ +GTG L ++ E
Sbjct: 803 AAFEETVKHLYDAAEHGEVDKLKGVIENVIVGKPIKLGTGCVDLRIDRE 851
Score = 58.4 bits (141), Expect = 3e-08
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 1042 KEHRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTL 1090
K +T E E +I E+ S +L +LV P E +G VAAQSIGEP TQM+L
Sbjct: 29 KRDGVTEEMVEEIIDEVVSAYLNALVEPYEAVGIVAAQSIGEPGTQMSL 77
>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha
domain fusion protein; Provisional.
Length = 1460
Score = 171 bits (436), Expect = 9e-43
Identities = 118/387 (30%), Positives = 183/387 (47%), Gaps = 55/387 (14%)
Query: 168 KGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDE 227
KGG GA+ + ++ + + E E+L + + E+ + KR+
Sbjct: 256 KGGMGAEAVRDLLDAIDLEKE----------AEELRAIIANGKGQKREKAV---KRLKVV 302
Query: 228 DCQLLGLNPKYARPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNENLR 277
D L N P MIL V+P+ PP +RP + DL +I N L+
Sbjct: 303 DAFLKSGN----DPADMILDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLK 358
Query: 278 RQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIR 337
R GAP I++ ++LQ + + FDN G+P T RP+KS+ LK K+GR R
Sbjct: 359 RLLDLGAPEIIVNNEKRMLQEAVDSLFDNGRRGRP-VTGPGNRPLKSLADMLKGKQGRFR 417
Query: 338 GNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPH 397
NL+GKRVD+S R+VI P + + Q G+P ++AL E P+ ++RL EL EY
Sbjct: 418 QNLLGKRVDYSGRSVIVVGPHLKLHQCGLPSAMAL-----ELFKPFVMKRLVEL-EYAA- 470
Query: 398 PPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMS 457
+++ K++ D + V + VL NR P+LH++
Sbjct: 471 -------------------NIKAAKRAVDRGASYVWDVLEEVIQDHPVLLNRAPTLHRLG 511
Query: 458 IMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 517
I ++ +L+ V + +NADFDGD+M +HVP S + +AE LM+ I SP
Sbjct: 512 IQAFEPVLVEGKAIKLHPLVCTAFNADFDGDQMAVHVPLSTQAQAEARVLMLSSNNIKSP 571
Query: 518 QSNRPVMGIVQDTLLGCRKIT-KRDTF 543
RP+ QD ++G +T +RD F
Sbjct: 572 AHGRPLTVPTQDMIIGVYYLTTERDGF 598
Score = 65.3 bits (159), Expect = 3e-10
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 22/136 (16%)
Query: 725 KVNQVLNTARDEAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVG-QQNVEGKRI 783
+V + A +E G + E N + M +G++G+ I Q+ G +++G+ I
Sbjct: 762 QVVDIWTEATEEVGEAMLAGFDEDNPIYMMADSGARGNIKQIRQLAGMRGLMADMKGEII 821
Query: 784 PFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETG 843
D P F E GL+ E+F G R+GL+DTA++T+++G
Sbjct: 822 -----DL-----------PIKANFRE-----GLSVLEYFISTHGARKGLVDTALRTADSG 860
Query: 844 YIQRRLVKAMEDIMVK 859
Y+ RRLV +D++V+
Sbjct: 861 YLTRRLVDVAQDVIVR 876
Score = 60.3 bits (146), Expect = 1e-08
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 1070 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK 1118
G +G +AAQSIGEP TQ+T+ TFH GV+ ++T G+PR+ E+ K
Sbjct: 974 GTAVGIIAAQSIGEPGTQLTMRTFHSGGVAGDDITQGLPRVAELFEARK 1022
Score = 41.8 bits (98), Expect = 0.004
Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 1316 IEAVRRALLDELRVVISFD-----GSYVNYRHLAILCDTMTYRGH--------LMAITRH 1362
IE + R +L ++ V D G VN + + G L+ IT+
Sbjct: 1126 IEVIARQMLRKVAVTNPGDSDYLPGRQVNRYEFEDTANNLILEGKQPPVGQPLLLGITKA 1185
Query: 1363 GINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
+ + + SF+ET +L DAA+ + D+L G+ EN+++G+ P GTG
Sbjct: 1186 SLATDSW--LSAASFQETTKVLTDAAIEGKVDHLAGLKENVIIGKPIPAGTG 1235
>gnl|CDD|214336 CHL00018, rpoC1, RNA polymerase beta' subunit.
Length = 663
Score = 165 bits (420), Expect = 6e-42
Identities = 97/316 (30%), Positives = 139/316 (43%), Gaps = 55/316 (17%)
Query: 239 ARPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNENLRR-QERNG-APA 286
P+WM+L +LP+ PP +RP S DL +I N L + P
Sbjct: 259 IEPEWMVLCLLPVLPPELRPIIQLDGGKLMSSDLNELYRRVIYRNNTLTDLLTTSRSTPG 318
Query: 287 HIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVD 346
++ +LLQ + DN + GQP +P KS ++ KEGR R NL+GKRVD
Sbjct: 319 ELVMCQKKLLQEAVDALLDNGIRGQP-MRDGHNKPYKSFSDVIEGKEGRFRENLLGKRVD 377
Query: 347 FSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAK 406
+S R+VI P++++ Q G+P IA+ L P+ I L H AK
Sbjct: 378 YSGRSVIVVGPSLSLHQCGLPREIAIELFQ-----PFVIRGLIRQ-----HLASNIRAAK 427
Query: 407 YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIM------- 459
IR+ + ++ + + G VL NR P+LH++ I
Sbjct: 428 SKIREKEPIVW----------------EILQEVMQGHPVLLNRAPTLHRLGIQAFQPILV 471
Query: 460 -GHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ 518
G I + P V +NADFDGD+M +HVP S E +AE LM ++SP
Sbjct: 472 EGRAICLHP--------LVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSPA 523
Query: 519 SNRPVMGIVQDTLLGC 534
P+ QD LLG
Sbjct: 524 IGDPISVPSQDMLLGL 539
>gnl|CDD|131440 TIGR02387, rpoC1_cyan, DNA-directed RNA polymerase, gamma subunit.
The RNA polymerase gamma subunit, encoded by the rpoC1
gene, is found in cyanobacteria and corresponds to the
N-terminal region the beta' subunit, encoded by rpoC, in
other bacteria. The equivalent subunit in plastids and
chloroplasts is designated beta', while the product of
the rpoC2 gene is designated beta''.
Length = 619
Score = 162 bits (412), Expect = 2e-41
Identities = 133/515 (25%), Positives = 221/515 (42%), Gaps = 94/515 (18%)
Query: 62 RKMKCETCTANMAECP---GHFGHLELAKPMFHIGFMKTVLS------------IMRSVC 106
R + CE C + E G+++LA P+ H+ ++K + S + + V
Sbjct: 75 RGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLKGIPSYVSILLDMPLRDVEQIVY 134
Query: 107 FNCSKIL--ADEDDHKFKQALKIRNPKNRLKKILDACKNKTKCEGGDEIDVPGQDGEEPL 164
FN +L + + K+KQ L E D+I + E
Sbjct: 135 FNAYVVLNPGNAKNLKYKQLLT----------------EDQWLEIEDQIYAEDSELENE- 177
Query: 165 KKNKGGCGAQQPKLTIEGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRI 224
G GA+ K + + + E A++ + E++ +K+ +R+ R+
Sbjct: 178 --EVVGIGAEALKQLLADLNL--EEVAEQLR----EEINGSKGQKRAKLIKRL-----RV 224
Query: 225 SDEDCQLLGLNPKYARPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNE 274
D +RP+WM+L V+P+ PP +RP + DL +I N
Sbjct: 225 IDN------FIATSSRPEWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNN 278
Query: 275 NLRRQERNGAPAHIISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEG 334
L R + AP I+ ++LQ + DN G+ + RP+KS+ ++ K+G
Sbjct: 279 RLARLQEILAPEIIVRNEKRMLQEAVDALIDNGRRGRT-VVGANNRPLKSLSDIIEGKQG 337
Query: 335 RIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERL--KELV 392
R R NL+GKRVD+S R+VI P + + Q G+P +A+ E P+ I RL + +V
Sbjct: 338 RFRQNLLGKRVDYSGRSVIVVGPKLKMHQCGLPKEMAI-----ELFQPFVIHRLIRQGIV 392
Query: 393 EYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPS 452
K K I R D + + V + + G V+ NR P+
Sbjct: 393 N------NIKAAKKLIQRADDEI-----------------WSVLQEVITGHPVMLNRAPT 429
Query: 453 LHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPK 512
LH++ I ++ +L+ V +NADFDGD+M +HVP S E + E LM+
Sbjct: 430 LHRLGIQAFEPILVDGRAIQLHPLVCPAFNADFDGDQMAVHVPLSLEAQTEARLLMLASN 489
Query: 513 CIVSPQSNRPVMGIVQDTLLGCRKITKRDTFIEKD 547
++SP + P++ QD +LGC +T + EK
Sbjct: 490 NVLSPATGEPIVTPSQDMVLGCYYLTALNPGAEKG 524
>gnl|CDD|235055 PRK02625, rpoC1, DNA-directed RNA polymerase subunit gamma;
Provisional.
Length = 627
Score = 156 bits (397), Expect = 2e-39
Identities = 99/312 (31%), Positives = 151/312 (48%), Gaps = 41/312 (13%)
Query: 239 ARPDWMILQVLPIPPPPVRP----------SDDLTHQLAMIIRHNENLRRQERNGAPAHI 288
+RP+WM+L V+P+ PP +RP + DL +I N L R + AP I
Sbjct: 240 SRPEWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEII 299
Query: 289 ISEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 348
+ ++LQ + DN G+ + RP+KS+ ++ K+GR R NL+GKRVD+S
Sbjct: 300 VRNEKRMLQEAVDALIDNGRRGR-TVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYS 358
Query: 349 ARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERL--KELVEYGPHPPPGKTGAK 406
R+VI P + + Q G+P +A+ E P+ I RL + +V K K
Sbjct: 359 GRSVIVVGPKLKMHQCGLPKEMAI-----ELFQPFVIHRLIRQGIVN------NIKAAKK 407
Query: 407 YIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIM 466
I R D + V + +G VL NR P+LH++ I ++
Sbjct: 408 LIQRADPEVWQ-----------------VLEEVIEGHPVLLNRAPTLHRLGIQAFEPILV 450
Query: 467 PYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGI 526
+L+ V +NADFDGD+M +HVP S E +AE LM+ I+SP + P++
Sbjct: 451 EGRAIQLHPLVCPAFNADFDGDQMAVHVPLSLEAQAEARLLMLASNNILSPATGEPIVTP 510
Query: 527 VQDTLLGCRKIT 538
QD +LGC +T
Sbjct: 511 SQDMVLGCYYLT 522
>gnl|CDD|132719 cd00630, RNAP_largest_subunit_C, Largest subunit of RNA polymerase
(RNAP), C-terminal domain. RNA polymerase (RNAP) is a
large multi-subunit complex responsible for the synthesis
of RNA. It is the principal enzyme of the transcription
process, and is the final target in many regulatory
pathways that control gene expression in all living
cells. At least three distinct RNAP complexes are found
in eukaryotic nuclei, RNAP I, RNAP II, and RNAP III, for
the synthesis of ribosomal RNA precursor, mRNA precursor,
and 5S and tRNA, respectively. A single distinct RNAP
complex is found in prokaryotes and archaea, which may be
responsible for the synthesis of all RNAs. Structure
studies revealed that prokaryotic and eukaryotic RNAPs
share a conserved crab-claw-shape structure. The largest
and the second largest subunits each make up one clamp,
one jaw, and part of the cleft. The largest RNAP subunit
(Rpb1) interacts with the second-largest RNAP subunit
(Rpb2) to form the DNA entry and RNA exit channels in
addition to the catalytic center of RNA synthesis. The
region covered by this domain makes up part of the foot
and jaw structures. In archaea, some photosynthetic
organisms, and some organelles, this domain exists as a
separate subunit, while it forms the C-terminal region of
the RNAP largest subunit in eukaryotes and bacteria.
Length = 158
Score = 142 bits (361), Expect = 5e-39
Identities = 53/120 (44%), Positives = 75/120 (62%), Gaps = 5/120 (4%)
Query: 1295 EDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCDTMTYRG 1354
E ++A E++E LGIEA R ++ E++ V++ G V+ RH+ ++ D MTY G
Sbjct: 43 EILNAASI-----HEMLEALGIEAARETIIREIQKVLASQGVSVDRRHIELIADVMTYSG 97
Query: 1355 HLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
L +TR G + T P+MR SFE+T LLDAA E D L GV+ENI+LG+ AP+GTG
Sbjct: 98 GLRGVTRSGFRASKTSPLMRASFEKTTKHLLDAAAAGEKDELEGVSENIILGRPAPLGTG 157
Score = 90.9 bits (226), Expect = 6e-21
Identities = 34/48 (70%), Positives = 42/48 (87%)
Query: 1070 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1117
GE +G +AAQSIGEP TQMTL TFH+AGV++ NVTLG+PRL+EI+N A
Sbjct: 1 GEAVGVLAAQSIGEPGTQMTLRTFHFAGVASMNVTLGLPRLKEILNAA 48
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 100 bits (251), Expect = 6e-21
Identities = 84/349 (24%), Positives = 115/349 (32%), Gaps = 26/349 (7%)
Query: 1462 SPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP 1521
S G L S + L+ VT G A P P PG + T
Sbjct: 39 SQGQLVSDSAELAAVTVVA-----GAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLS 93
Query: 1522 T------SPGYSPTSPGYSPTSP---TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTS 1572
T + SPT PG S P T P+SP SP P SP P +
Sbjct: 94 TLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPP 153
Query: 1573 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS-PTSPAYSPTSPAYSPTSPSY 1631
+ + + S + S P SP + +P+SP P S + SP S
Sbjct: 154 AAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPI 213
Query: 1632 SPTSPSYSPTSP---------SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
S ++ S +P S S +S S S +P PT +
Sbjct: 214 SASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEAS 273
Query: 1683 TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSP--TSSSYSPTSPS 1740
S + S+ S + SPSSP PA S + S SSS S +S S
Sbjct: 274 GWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSS 333
Query: 1741 YSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTS 1789
S SP + P + SP PS SP++++
Sbjct: 334 ESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASA 382
Score = 96.8 bits (241), Expect = 8e-20
Identities = 85/345 (24%), Positives = 119/345 (34%), Gaps = 20/345 (5%)
Query: 1443 GMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSS 1502
P +G P G +P S T A SP + +P P
Sbjct: 60 AACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASP-AREGSPTPPGPSSPDPPP 118
Query: 1503 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYS 1562
P P+SP SP P SP P + + + S + + P S
Sbjct: 119 PTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSS 178
Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
P + +P+SP P P S + SP S S ++ + +P +P S
Sbjct: 179 PEETARAPSSPPAEP------PPSTPPAAASPRPPRRSSPISASASSPAP-APGRSAADD 231
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
A + +S S S S + P T P+ + ++ S P S S S
Sbjct: 232 AGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSS-SS 290
Query: 1683 TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYS 1742
SPS SP +PSSPR S +S S S + S +SSS S + S
Sbjct: 291 PRERSPSPSPS--------SPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVS 342
Query: 1743 PSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
P SP P PSSP+ P +PS+P S
Sbjct: 343 PGPSPSRSPSP---SRPPPPADPSSPRKRPRPSRAPSSPAASAGR 384
Score = 89.5 bits (222), Expect = 1e-17
Identities = 85/341 (24%), Positives = 122/341 (35%), Gaps = 21/341 (6%)
Query: 1468 SPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYS 1527
S +S + V G A P P + + S ++P +S ++ +
Sbjct: 39 SQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPA 98
Query: 1528 PTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1587
+ SPT P PSSP P P P SP SP P SP P +
Sbjct: 99 SPAREGSPTPPG--PSSP--DPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPA 154
Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
+ + + S + S P SP A +P+SP P P S + SP
Sbjct: 155 AGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEP------PPSTPPAAASPRPPR 208
Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY 1707
S S ++ S +P + G S + S S +S P++ P A
Sbjct: 209 RSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGW------GPENECPLPRPAP 262
Query: 1708 SPSSPRLSPASPYSPTSPNYSPTSSSYSPT--SPSYSPSSP--TYSPSSPYNAGGGNPDY 1763
R+ AS ++ S P SSS SP SPS SPSSP +PSSP + +
Sbjct: 263 ITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSR 322
Query: 1764 SPSSPQYSP-SAGYSPSAPGYSPSSTSQYTPQTNRDDSTTK 1803
SS S S +A PS + +P +
Sbjct: 323 ESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPS 363
Score = 88.3 bits (219), Expect = 3e-17
Identities = 73/335 (21%), Positives = 109/335 (32%), Gaps = 20/335 (5%)
Query: 1445 TPARSPVSGTPYHDGMMSPGYLFSPNLRL--SPVTDAQFSPYVGGMAFSPTSSPGYSPSS 1502
P +P +P SP S LR SP SP G + + +S S
Sbjct: 116 PPPPTPPPASPPP----SPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQ 171
Query: 1503 PGY-SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1561
S + P +P + SP S S SPA +P +
Sbjct: 172 AALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASAS--SPAPAPGRSAA 229
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
S S +S S S +P PT + ++ S P S
Sbjct: 230 DDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIW---EASGWNGPSSRPGPAS 286
Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
+ S SPS SP S + + S +S S +S + S +S + S
Sbjct: 287 SS-SSPRERSPSPSPS-SPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPG 344
Query: 1682 PT---SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTS 1738
P+ SP+ S P +P S + P + +PSSP S PT + +
Sbjct: 345 PSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAG---RPTRRRARAAVAGRARRR 401
Query: 1739 PSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
+ SP +AG + + P +PS
Sbjct: 402 DATGRFPAGRPRPSPLDAGAASGAFYARYPLLTPS 436
Score = 82.5 bits (204), Expect = 2e-15
Identities = 59/322 (18%), Positives = 94/322 (29%), Gaps = 16/322 (4%)
Query: 1500 PSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP-AYSPTS 1558
P++PG + S G + + + P P P +P +
Sbjct: 25 PATPGDAADDLLSG--SQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPAN 82
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS 1618
S S + S S +P+ S +P P S P P+ P SP SP
Sbjct: 83 ESRSTPTWSLSTLAPASPAREGSPTP------PGPSSPDPPPPTPPPASPPPSPAPDLSE 136
Query: 1619 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1678
P SP P SP + SP+ + + S + + + P
Sbjct: 137 MLRPVGSPGPPP--AASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPP 194
Query: 1679 SYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTS 1738
+P + +P SA S S + S +S + S
Sbjct: 195 PSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENE 254
Query: 1739 PSYSPSSPTYSPSSPYNAGGGN---PDYSPSSPQYSPSAGYSPSAPGY--SPSSTSQYTP 1793
+P P+ + A G N P+S SP +P S + S
Sbjct: 255 CPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRA 314
Query: 1794 QTNRDDSTTKDDKNTKGDKSSR 1815
++ S +T S
Sbjct: 315 SSSSSSSRESSSSSTSSSSESS 336
Score = 44.4 bits (105), Expect = 6e-04
Identities = 26/165 (15%), Positives = 43/165 (26%), Gaps = 11/165 (6%)
Query: 1476 VTDAQFSPY--VGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGY 1533
+TDA FS V + + G S P + + P +
Sbjct: 753 ITDALFSNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAA 812
Query: 1534 SPTS----PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPT 1585
S T+ G + PA P + + P S +S S + +
Sbjct: 813 SRTASKRKSRSHTPDGGSESSGPARPPGAAA-RPPPARSSESSKSKPAAAGGRARGKNGR 871
Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
P + + + A +PA P P
Sbjct: 872 RRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPM 916
Score = 40.2 bits (94), Expect = 0.012
Identities = 20/145 (13%), Positives = 36/145 (24%), Gaps = 5/145 (3%)
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
P P S A+ P + + S T+ S + S
Sbjct: 777 PAEPQRGAGSSPPVRAEAAFRRPGRLRRSG-----PAADAASRTASKRKSRSHTPDGGSE 831
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1654
S P P + P + +S + A + + P + +
Sbjct: 832 SSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKA 891
Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPS 1679
+ + +PA P P
Sbjct: 892 AAAAPPAGAPAPRPRPAPRVKLGPM 916
Score = 37.5 bits (87), Expect = 0.078
Identities = 16/139 (11%), Positives = 31/139 (22%), Gaps = 4/139 (2%)
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
S + + + P+ S + S + PA P
Sbjct: 782 RGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPG- 840
Query: 1615 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 1674
A P S +S S + + + P + + +
Sbjct: 841 AAARPPPARSSESSKSKPAAAG---GRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPP 897
Query: 1675 PTSPSYSPTSPTYSPTSPS 1693
+P+ P P
Sbjct: 898 AGAPAPRPRPAPRVKLGPM 916
Score = 37.5 bits (87), Expect = 0.087
Identities = 19/151 (12%), Positives = 38/151 (25%), Gaps = 3/151 (1%)
Query: 1612 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
P P S ++ + P+ S + S + P
Sbjct: 777 PAEPQRGAGSSPPVRAEAAFRRPGRL-RRSGPAADAASRTASKRKSRSHTPDGGSESSGP 835
Query: 1672 GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS 1731
P + + P S +S S + + P + + +
Sbjct: 836 ARPPGAAA-RPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRAR-PGAAAPPKAAA 893
Query: 1732 SSYSPTSPSYSPSSPTYSPSSPYNAGGGNPD 1762
++ +P+ P P GG +P
Sbjct: 894 AAPPAGAPAPRPRPAPRVKLGPMPPGGPDPR 924
Score = 37.5 bits (87), Expect = 0.091
Identities = 22/158 (13%), Positives = 43/158 (27%)
Query: 1501 SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS 1560
S+P P+ + + G + P + + P + A S T+
Sbjct: 759 SNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASK 818
Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1620
S + S S P P + P + +S S + + + P
Sbjct: 819 RKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPE 878
Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
A + + + +P+ P P
Sbjct: 879 PRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPM 916
Score = 37.5 bits (87), Expect = 0.092
Identities = 25/163 (15%), Positives = 41/163 (25%), Gaps = 5/163 (3%)
Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
FS S + + P + PG S P++ S
Sbjct: 758 FSNPSLVPAKLAEALALLEPAEPQRGAGSSPPVRAEAAFRRPGRLRRS---GPAADAASR 814
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
T+ S + S S P P + S S + P+ +
Sbjct: 815 TASKRKSRSHTPDGGSESSGPARPP-GAAARPPPARSSESSKSKPAAAGGRARGKNGRRR 873
Query: 1610 YSPTSPAYSPTSPAYSPTSPS-YSPTSPSYSPTSPSYSPTSPS 1651
P P P + A + + +P+ P P
Sbjct: 874 PRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVKLGPM 916
Score = 35.9 bits (83), Expect = 0.24
Identities = 20/144 (13%), Positives = 33/144 (22%), Gaps = 4/144 (2%)
Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
P P S A+ P + + S T+ S + S S P
Sbjct: 777 PAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPA 836
Query: 1663 SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSP 1722
P + S S + P + + P + P + +
Sbjct: 837 RPP-GAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAA 895
Query: 1723 TSPNYSPTSSSYSPTSPSYSPSSP 1746
+P P P
Sbjct: 896 PPAG-APAPRPRPAPRVKLGPMPP 918
Score = 33.6 bits (77), Expect = 1.4
Identities = 17/131 (12%), Positives = 30/131 (22%), Gaps = 3/131 (2%)
Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
P P S + + + P+ S + S + P
Sbjct: 777 PAEPQRGA-GSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGP 835
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
A P + + P S +S S + P P +P + +
Sbjct: 836 ARPPGAAA-RPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAA 894
Query: 1682 PTSPTYSPTSP 1692
P
Sbjct: 895 APPAGAPAPRP 905
Score = 31.7 bits (72), Expect = 4.8
Identities = 25/141 (17%), Positives = 39/141 (27%), Gaps = 6/141 (4%)
Query: 1584 PTSPSYSPTSPSYSPTSPSYSPTSPAYS-PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
+ +SP + P S P + A S T+ S + S S P
Sbjct: 778 AEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPAR 837
Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYS 1702
P + S S + PA + P P P + + +A
Sbjct: 838 PP-GAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAP 896
Query: 1703 PSLAYSPSSP----RLSPASP 1719
P+ A +P P
Sbjct: 897 PAGAPAPRPRPAPRVKLGPMP 917
Score = 31.7 bits (72), Expect = 5.7
Identities = 17/139 (12%), Positives = 29/139 (20%), Gaps = 3/139 (2%)
Query: 1654 PTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
P P S + + + + +S ++P S P
Sbjct: 777 PAEPQRGAGSSPPVRAEAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPA 836
Query: 1714 LSP---ASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY 1770
P A P S S + + + P P G ++
Sbjct: 837 RPPGAAARPPPARSSESSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAP 896
Query: 1771 SPSAGYSPSAPGYSPSSTS 1789
A P
Sbjct: 897 PAGAPAPRPRPAPRVKLGP 915
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 92.7 bits (230), Expect = 2e-18
Identities = 63/311 (20%), Positives = 93/311 (29%), Gaps = 15/311 (4%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
+P G SP P P P SP + P P P P P
Sbjct: 2600 APVDDRGDPRGPAPPSPLPPDTHAPDP--PPPSPSPAANEPDPHPPPTVPPPERPRDDPA 2657
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
S + + +SP P + PT + P P +P PA
Sbjct: 2658 PGRVSRPRRARRLGRAA-QASSPPQRPRRRAARPT---VGSLTSLADPPPPPPTP-EPAP 2712
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
A +P P + + + +P + P +P T+ +P
Sbjct: 2713 HALVSA-TPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAP 2771
Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS-PTSPNYSP 1729
P P T P + S S + + P+ + + P + P P P
Sbjct: 2772 PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831
Query: 1730 TSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPS-SPQYSPSAGYSP-----SAPGY 1783
TS+ + P P P+ GG PS SP P+A P + P
Sbjct: 2832 TSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAV 2891
Query: 1784 SPSSTSQYTPQ 1794
S S+ S P
Sbjct: 2892 SRSTESFALPP 2902
Score = 90.4 bits (224), Expect = 9e-18
Identities = 60/308 (19%), Positives = 90/308 (29%), Gaps = 9/308 (2%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1551
P SP + + P P P P P S SSP P
Sbjct: 2627 PPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAA-QASSPPQRPRR 2685
Query: 1552 PAYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
A PT S + P P +P ++ S + P P+ + + P +P+ P +
Sbjct: 2686 RAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPA--PPA 2743
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
P +P T+ +P P+ P T P+ + S S + P+
Sbjct: 2744 VPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSES-RESLPSPW 2802
Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA-KYSPSLAYSPSSPRLSPASPYSPTSPN 1726
+ + + P SP P P SA +P P P L +P
Sbjct: 2803 DPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDV 2862
Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPS 1786
S P+ P + P + P P +P P P
Sbjct: 2863 RRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQ 2922
Query: 1787 STSQYTPQ 1794
PQ
Sbjct: 2923 PPPPPQPQ 2930
Score = 87.7 bits (217), Expect = 6e-17
Identities = 66/299 (22%), Positives = 93/299 (31%), Gaps = 32/299 (10%)
Query: 1507 PSSPGYSPTSPGYSPTSPGYS----PTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYS 1562
SSP P PT + P P +P ++ S P PA + +
Sbjct: 2676 ASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL 2735
Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
P +P +P + P +P T+ +P P+ P T PA + S
Sbjct: 2736 PAAP--APPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSE 2793
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PAYSPTSPGYSPTSPSY 1680
+ + PS + + + P+ SP P PTS P P PG P S
Sbjct: 2794 S-RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPL 2852
Query: 1681 --------------SPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPN 1726
SP P +P+ P P+++ S S L P P P P
Sbjct: 2853 GGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQP- 2911
Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSP 1785
P P P P P P P +P P+ PS P
Sbjct: 2912 --QAPPPPQPQPQPPPPPQPQPPPPPP-----PRPQ-PPLAPTTDPAGAGEPSGAVPQP 2962
Score = 87.3 bits (216), Expect = 8e-17
Identities = 66/304 (21%), Positives = 100/304 (32%), Gaps = 16/304 (5%)
Query: 1500 PSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYS--PSSPGYSPTSPAYSPT 1557
P P P++P S P +P + TS P +P S P +P P P
Sbjct: 2554 PLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPR-GPA 2612
Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSP----TSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
PS P +P P SP+ + P P P P S A
Sbjct: 2613 PPSPLPPDTH-APDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLG 2671
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1669
A +SP P + PT S + P P +P ++ S + P PA +
Sbjct: 2672 RAA-QASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730
Query: 1670 SPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSP 1729
+ P +P+ P P T + + + +P+ P A P +
Sbjct: 2731 ASPALPAAPA-PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVA 2789
Query: 1730 TSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTS 1789
+ S + PS + + A P SP+ P P++ P+AP P
Sbjct: 2790 SLSESRESLPSPWDPADPPAAVLAPAA-ALPPAASPAGPLPPPTSA-QPTAPPPPPGPPP 2847
Query: 1790 QYTP 1793
P
Sbjct: 2848 PSLP 2851
Score = 86.9 bits (215), Expect = 1e-16
Identities = 65/304 (21%), Positives = 96/304 (31%), Gaps = 15/304 (4%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1551
P P P++P S P +P + TS P +P P G
Sbjct: 2553 PPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPP-QSARPRAPVDDRGDPRGP 2611
Query: 1552 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
SP P +P P SPS + P P P P P S A
Sbjct: 2612 APPSPLPPD--THAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARR 2669
Query: 1612 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
A +SP P + PT + P P +P P+ A +P P
Sbjct: 2670 LGRAA-QASSPPQRPRRRAARPT---VGSLTSLADPPPPPPTP-EPAPHALVSA-TPLPP 2723
Query: 1672 GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS 1731
G P + + + +P P+ + +P P+ P A P +P P
Sbjct: 2724 G--PAAARQASPALPAAPAPPA--VPAGPATPGGPARPARPPT-TAGPPAPAPPAAPAAG 2778
Query: 1732 SSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQY 1791
T P+ + S + S P +P + +P + SP+ P P+S
Sbjct: 2779 PPRRLTRPAVASLSES-RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT 2837
Query: 1792 TPQT 1795
P
Sbjct: 2838 APPP 2841
Score = 85.4 bits (211), Expect = 3e-16
Identities = 75/391 (19%), Positives = 115/391 (29%), Gaps = 50/391 (12%)
Query: 1445 TPARSP---VSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPS 1501
TP +P VS TP G + P L +P A + + + P + +
Sbjct: 2707 TPEPAPHALVSATPLPPGPAAARQAS-PALPAAPAPPAVPAGPATPGGPARPARPP-TTA 2764
Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY 1561
P +P+ P P T P + S + P+ + + + P+
Sbjct: 2765 GPP-APAPPAAPAAGPPRRLTRPAVASLSES-RESLPSPWDPADPPAAVLAPAAALPPAA 2822
Query: 1562 SPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSP-------SYSPTSPAYSPT 1613
SP P PTS PT+P P P S +P PA
Sbjct: 2823 SPAGPLPPPTSAQ--PTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPAR 2880
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1673
P PA S ++ S++ +P P P P P P P P
Sbjct: 2881 PPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPP--PPQPQPPPPPPPR 2938
Query: 1674 SPTSPSYSP-TSPTYSPTSPSYNPQSAKYSP-------SLAYSPSSPRLSPASPYSPTSP 1725
+ + + P+ P P P+ R +PAS P +
Sbjct: 2939 PQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTG 2998
Query: 1726 NYSPTSSSYS--------PTSPSYSPSSPTYSP-------------SSPYNAGGGNPDYS 1764
+ SS++ P S + P S + D
Sbjct: 2999 HSLSRVSSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDPL 3058
Query: 1765 PSSPQYSPSAGYSPSAP--GYSPSSTSQYTP 1793
P P + P+ P G S +SQ+ P
Sbjct: 3059 PPEPHDPFAHEPDPATPEAGARESPSSQFGP 3089
Score = 83.8 bits (207), Expect = 9e-16
Identities = 66/313 (21%), Positives = 100/313 (31%), Gaps = 13/313 (4%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
+P S +P P SP + P P P P P S
Sbjct: 2612 APPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLG 2671
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
A +SP P + PT S + P P +P ++ S + P P+ +
Sbjct: 2672 RAA-QASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQ 2730
Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1666
+ P +PA P + P +P T+ +P P+ P T PA
Sbjct: 2731 ASPALPAAPA--PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788
Query: 1667 SPTSPGYSPTSPSYSPTSPTYSPTSP-SYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
+ S + P P + +P + P +A + L S+ +P P P P
Sbjct: 2789 ASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP-PP 2847
Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA---GYSPSAPG 1782
P S +P P+ SP++ A P + P S S P P
Sbjct: 2848 PSLPLGGSVAPGGD-VRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPE 2906
Query: 1783 YSPSSTSQYTPQT 1795
P + PQ
Sbjct: 2907 RPPQPQAPPPPQP 2919
Score = 81.1 bits (200), Expect = 6e-15
Identities = 73/360 (20%), Positives = 108/360 (30%), Gaps = 57/360 (15%)
Query: 1496 PGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPT----SPGYSPTSPTYSPSSPGY---- 1547
P Y + P + G +P G P P P +P P P P P
Sbjct: 2478 PVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWI 2537
Query: 1548 ---------------SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-- 1590
P PA P +P S P +P + TS + P +P S
Sbjct: 2538 RGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSAR 2597
Query: 1591 ---PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
P P P+ P+ +P P SP+ + P P P P P
Sbjct: 2598 PRAPVDDRGDPRGPA-PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDP 2656
Query: 1648 TSPSYS-------------PTSPSYSPTSPAYSPT-----------SPGYSPTSPSYSPT 1683
S +SP P A PT P +P ++
Sbjct: 2657 APGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALV 2716
Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSS-YSPTSPSYS 1742
S T P P+ Q++ P+ P+ P PA+P P P PT++ +P P+
Sbjct: 2717 SATPLPPGPAAARQASPALPAAPAPPAVPA-GPATPGGPARPARPPTTAGPPAPAPPAAP 2775
Query: 1743 PSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTT 1802
+ P A + S P A + + + +P T+
Sbjct: 2776 AAGP--PRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTS 2833
Score = 79.2 bits (195), Expect = 2e-14
Identities = 55/293 (18%), Positives = 84/293 (28%), Gaps = 23/293 (7%)
Query: 1521 PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1580
P +P Y + P + +P G P P P +P P P
Sbjct: 2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRML 2534
Query: 1581 SY----------------SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1624
++ P P+ P +P S P +P + TS A P +P
Sbjct: 2535 TWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPP- 2593
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
P +P P P+ P+ +P P SP+ + P P P
Sbjct: 2594 QSARPR-APVDDRGDPRGPA-PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPER 2651
Query: 1685 PTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPS 1744
P P + A SSP P + P +S P P +P
Sbjct: 2652 PRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAAR--PTVGSLTSLADPPPPPPTPE 2709
Query: 1745 S--PTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
++P G + + +P+ P+ P P T
Sbjct: 2710 PAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPT 2762
Score = 45.7 bits (108), Expect = 3e-04
Identities = 38/209 (18%), Positives = 60/209 (28%), Gaps = 19/209 (9%)
Query: 1612 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
P +P Y + A P + +P P P P +P P P
Sbjct: 2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRML 2534
Query: 1672 GY----------------SPTSPSYSPTSPTYSPTSPSYNPQ-SAKYSPSLAYSPSSPRL 1714
+ P P+ P +P S P P+ S S A P +P
Sbjct: 2535 TWIRGLEELASDDAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPP- 2593
Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
A P +P P + P+ +P P SP A + P +
Sbjct: 2594 QSARPRAPVDDRGDPRGPA-PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERP 2652
Query: 1775 GYSPSAPGYSPSSTSQYTPQTNRDDSTTK 1803
P+ S ++ + + S +
Sbjct: 2653 RDDPAPGRVSRPRRARRLGRAAQASSPPQ 2681
Score = 43.4 bits (102), Expect = 0.002
Identities = 39/191 (20%), Positives = 63/191 (32%), Gaps = 17/191 (8%)
Query: 1640 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
P +P Y + + P + +P P P P +P P +P+
Sbjct: 2475 PGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRML 2534
Query: 1700 KYSPSLAYSPS------SPRLSPASPYSPTSPNYSPTSSSYSP-------TSPSYSPSSP 1746
+ L S P L PA+P P +P+ S +P TS + P +P
Sbjct: 2535 TWIRGLEELASDDAGDPPPPLPPAAP--PAAPDRSVPPPRPAPRPSEPAVTSRARRPDAP 2592
Query: 1747 TYS--PSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKD 1804
S P +P + G +P SP + P P SP++ +
Sbjct: 2593 PQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERP 2652
Query: 1805 DKNTKGDKSSR 1815
+ + SR
Sbjct: 2653 RDDPAPGRVSR 2663
Score = 39.2 bits (91), Expect = 0.029
Identities = 40/235 (17%), Positives = 62/235 (26%), Gaps = 42/235 (17%)
Query: 1496 PGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT---------SPTYSPSSPG 1546
P P + +P + + G P +P P +P P+ P
Sbjct: 255 PAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPD 314
Query: 1547 YSPTSPAYSP------------TSPSYSPTS-----------PSYSPTSPSYSPTSPSYS 1583
P +PA SP P P+++P S ++ +
Sbjct: 315 PPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHH 374
Query: 1584 PTSPSYSPTSPSYSP--TSP----SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
P S + +P + PA PT P+ +P P+
Sbjct: 375 PKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAP--TPVPASAPPPPA 432
Query: 1638 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
PS P S P P +PA P + P P
Sbjct: 433 TPL--PSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATRKALDALRERRPPEP 485
Score = 32.6 bits (74), Expect = 2.7
Identities = 39/250 (15%), Positives = 74/250 (29%), Gaps = 38/250 (15%)
Query: 1580 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT---------SPAYSPTSPS 1630
P+ P + +P + + P A +P A P +P P P
Sbjct: 255 PAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPD 314
Query: 1631 YSPTSPSYSP------------TSPSYSPTS-----------PSYSPTSPSYSPTSPAYS 1667
P +P+ SP P P+++P S ++ +
Sbjct: 315 PPPPAPAGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHH 374
Query: 1668 PTSPGYSPTSPSYSP--TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
P + +P + A P+ +P+ + ++P P +P
Sbjct: 375 PKRASLPTRKRRSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATP 434
Query: 1726 NYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSP 1785
P++ S P+ P +P++ +PD + + P PG
Sbjct: 435 --LPSAEPGSDDGPAPPPERQPPAPATE--PAPDDPDDATRKALDALRERRPPEPPGADL 490
Query: 1786 SSTSQYTPQT 1795
+ P T
Sbjct: 491 AELLGRHPDT 500
Score = 31.1 bits (70), Expect = 8.8
Identities = 35/212 (16%), Positives = 61/212 (28%), Gaps = 20/212 (9%)
Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
A T P P P + + + +P + P+ P
Sbjct: 268 APETARGATGP---PPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPDPPPPAPAGDA 324
Query: 1665 AYSPTSPG-YSPTSPSYSPTS-----------PTYSPTSPSYNPQSAKYSPSLAYSPSSP 1712
G SP P PT++P S + + ++ P A P+
Sbjct: 325 EEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRK 384
Query: 1713 RLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
R S +P + + P+S +P+ P + P P
Sbjct: 385 RRSARHAATPFA---RGPGGDDQTRPAAPVPASVP-TPAPTPVPASAPPPPATPLPSAEP 440
Query: 1773 SAGYSPSAP-GYSPSSTSQYTPQTNRDDSTTK 1803
+ P+ P P + + + DD+T K
Sbjct: 441 GSDDGPAPPPERQPPAPATEPAPDDPDDATRK 472
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is the
most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 91.4 bits (226), Expect = 2e-18
Identities = 76/332 (22%), Positives = 121/332 (36%), Gaps = 27/332 (8%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1551
T S + + P PT+P S PT PTS T P+ S
Sbjct: 428 TTKSVIFVYTLVHVEPHKTTAVPTTP--SLPPASTGPTVSTADPTSGT--PTGTTSSTLP 483
Query: 1552 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
SPTS + S T + SPT T + SPT+ S T + SPT T+ A S
Sbjct: 484 EDTSPTSRTTSATPNATSPTPAV--TTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATS 541
Query: 1612 PTSPAYSPTSPAYSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
P + S + A SP SP T+ ++PS ++ + SPTS
Sbjct: 542 PPTGTTSVPN-ATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGI 600
Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYS 1728
S +S + + T+P + P+ + +PS+ + LSP TS
Sbjct: 601 PSSSHSTPRSNSTSTTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSG 660
Query: 1729 PTSSSYS------------PTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGY 1776
P +SS S P + SPS+P+ ++ + ++ + S S
Sbjct: 661 PGNSSTSRYPGEVHVTEGMPNPNATSPSAPSGQKTAVPTVTSTGGKANSTTKETSGSTLM 720
Query: 1777 SPSAP-----GYSPSSTSQYTPQTNRDDSTTK 1803
+ ++P + + + T S +
Sbjct: 721 ASTSPHTNEGAFRTTPYNATTYLPPSTSSKLR 752
Score = 70.2 bits (171), Expect = 8e-12
Identities = 65/277 (23%), Positives = 108/277 (38%), Gaps = 21/277 (7%)
Query: 1543 SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
++P + + T+ + + T+ + S + T P + PT+PS
Sbjct: 395 ANPVADAKTLIITRTATNATTTTHKVVFHKAPDTTKSVIFVYTLVHVEPHKTTAVPTTPS 454
Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP--TSPSYSPTSPSYSPTSPSY-------- 1652
P S PT PTS + T+ S P TSP+ TS + + TSP+
Sbjct: 455 LPPASTG--PTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNAT 512
Query: 1653 SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP----SLAYS 1708
SPT+ S T A SPT T+ + SP + T S + + +PQ + SP +
Sbjct: 513 SPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNAT-SPQVTEESPVNNTNTPVV 571
Query: 1709 PSSPRLSPASPY-SPTSPNYSPTSSSYSP---TSPSYSPSSPTYSPSSPYNAGGGNPDYS 1764
S+P + ++ SPTS + + +S + +P G + +
Sbjct: 572 TSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENIT 631
Query: 1765 PSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDST 1801
+P + S +PG P +TSQ + N S
Sbjct: 632 EETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSR 668
Score = 62.9 bits (152), Expect = 2e-09
Identities = 80/342 (23%), Positives = 119/342 (34%), Gaps = 40/342 (11%)
Query: 1434 PSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGM---AF 1490
PS P SGTP + SP R + T SP A
Sbjct: 453 PSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNAT 512
Query: 1491 SPTS---SPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT-------- 1539
SPT+ S + +SP + TSP TS + TSP + SP
Sbjct: 513 SPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVP-NATSPQVTEESPVNNTNTPVV 571
Query: 1540 YSPSS------------PGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1587
S S G SPTS S S+S + + T+P + P+
Sbjct: 572 TSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTSTTPLLTSAHPTGGENIT 631
Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
+P+ PS + S SP TS P + + S P + P+ +
Sbjct: 632 EETPSVPSTTHVSTL-SPGPGP-GTTSQVSGPGNSSTSR-----YPGEVHVTEGMPNPNA 684
Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY 1707
TSPS +PS T+ ++ G + ++ + S + TSP N + + +P A
Sbjct: 685 TSPS----APSGQKTAVPTVTSTGGKANSTTKETSGSTLMASTSPHTNEGAFRTTPYNAT 740
Query: 1708 SPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYS 1749
+ P S +S P SP ++ T P P +S
Sbjct: 741 TYLPP--STSSKLRPRWTFTSPPVTTKQATVPVPPTQHPDHS 780
>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421). This
family represents a conserved region approximately 350
residues long within a number of plant proteins of
unknown function.
Length = 357
Score = 73.4 bits (180), Expect = 2e-13
Identities = 59/261 (22%), Positives = 71/261 (27%), Gaps = 20/261 (7%)
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
P + P +P SP S +P S Y PS P S P
Sbjct: 65 PLQQVNAALPPAPAPQSPQPDQQQQSQAPPSHQY----PSQLPPQQVQSVPQQPTPQQEP 120
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1654
Y P S P + P P P P P Y P P + S
Sbjct: 121 YYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSP--PQQPQYQQNPP---PQAQSAPQ 175
Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS---YNPQSAK---YSPSLAYS 1708
S Y SP + P P S + P YS PS Y P Y
Sbjct: 176 VSGLYPEESPYQPQSYPPNEPLPSSMAMQPP-YSGAPPSQQFYGPPQPSPYMYGGPGGRP 234
Query: 1709 PSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP 1768
S P S Y + P S S +Y+P + S +
Sbjct: 235 NSGFPSGQQPPPSQGQEGYGYSG---PPPSKGNHGSVASYAPQGSSQSYSTA-YPSLPAA 290
Query: 1769 QYSPSAGYSPSAPGYSPSSTS 1789
P A SAP S S
Sbjct: 291 TVLPQALPMSSAPMSGGGSGS 311
Score = 73.0 bits (179), Expect = 3e-13
Identities = 55/261 (21%), Positives = 70/261 (26%), Gaps = 13/261 (4%)
Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
S + + S P + + +P + P+ +P SP S +P S
Sbjct: 36 SSEAHSFHVDSTKQPPAPEQVAKHELADAPLQQVNAALPPAPAPQSPQPDQQQQSQAPPS 95
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
Y P+ P S P Y P S P + P P P
Sbjct: 96 HQY----PSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQ 151
Query: 1661 PT-SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
SP P P +P P Y PQS Y P+ S P S
Sbjct: 152 QYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQS--YPPNEPLPSSMAMQPPYSG 209
Query: 1720 YSPTSPNYSPTSSSYS----PTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAG 1775
P+ Y P S P S P G YS P
Sbjct: 210 APPSQQFYGPPQPSPYMYGGPGGRPNSGFPSGQQPPPSQGQEGYG--YSGPPPSKGNHGS 267
Query: 1776 YSPSAPGYSPSSTSQYTPQTN 1796
+ AP S S S P
Sbjct: 268 VASYAPQGSSQSYSTAYPSLP 288
Score = 71.9 bits (176), Expect = 6e-13
Identities = 65/259 (25%), Positives = 78/259 (30%), Gaps = 18/259 (6%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
+ P +P SP +P S Y P P S P Y P
Sbjct: 70 NAALPPAPAPQSPQPDQQQQSQAPPSHQY----PSQLPPQQVQSVPQQPTPQQEPYYPPP 125
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
S P + P P P P P Y P P + S S Y
Sbjct: 126 SQPQPPPAQQPQAQQPQPPPQVPQQQQYQSP--PQQPQYQQNPP---PQAQSAPQVSGLY 180
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS---YSPTSPS-YSPTSPSYSPTSPAY 1666
SP + P P S + P YS PS Y P PS Y P P S
Sbjct: 181 PEESPYQPQSYPPNEPLPSSMAMQPP-YSGAPPSQQFYGPPQPSPYMYGGPGGRPNSGFP 239
Query: 1667 SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPN 1726
S P S Y + P S + A S +YS + P L A+ P
Sbjct: 240 SGQQPPPSQGQEGYGYSGPPPSKGNHGSVASYAPQGSSQSYSTAYPSLPAATVL----PQ 295
Query: 1727 YSPTSSSYSPTSPSYSPSS 1745
P SS+ S SP S
Sbjct: 296 ALPMSSAPMSGGGSGSPQS 314
Score = 71.9 bits (176), Expect = 7e-13
Identities = 60/262 (22%), Positives = 75/262 (28%), Gaps = 21/262 (8%)
Query: 1516 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1575
P +P SP +P S Y P P S P Y P S
Sbjct: 74 PPAPAPQSPQPDQQQQSQAPPSHQY----PSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQ 129
Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT 1634
P + P P P SP P P +P P Y P
Sbjct: 130 PPPAQQPQAQQPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYPEESPYQPQ 189
Query: 1635 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSY 1694
S + PS P YS PS P P+ Y + P+ PS
Sbjct: 190 SYPPNEPLPSSMAMQPPYSGAPPSQQFYGPP-QPSPYMYGGPGGRPNSGFPSGQQPPPSQ 248
Query: 1695 NPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP----TYSP 1750
+ YS PS + Y+P S SYS PS ++
Sbjct: 249 GQEGYGYSGP---PPSKGNHGSVASYAPQGS-----SQSYSTAYPSLPAATVLPQALPMS 300
Query: 1751 SSPYNAGGGNPDYSPSSPQYSP 1772
S+P + GG SP S P
Sbjct: 301 SAPMSGGGSG---SPQSGNRVP 319
Score = 59.6 bits (144), Expect = 6e-09
Identities = 47/230 (20%), Positives = 64/230 (27%), Gaps = 13/230 (5%)
Query: 1496 PGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTS---PGYSPTSPTYSPSSPGYS--PT 1550
P P S P Y P S P + P P P Y P
Sbjct: 99 PSQLPPQQVQSVPQQPTPQQEPYYPPPSQPQPPPAQQPQAQQPQPPPQVPQQQQYQSPPQ 158
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
P Y P + ++P S P SP P P + + P S +
Sbjct: 159 QPQYQQNPPPQAQSAPQVSGLYPEESPYQPQSYPPNEPLPSSMAMQPPYSGAPPSQQFYG 218
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
P Y P P S S P S Y + P P S + +Y+P
Sbjct: 219 PPQPSPYMYGGPGGRPNSGFPSGQQPPPSQGQEGYGYSGP---PPSKGNHGSVASYAPQG 275
Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPY 1720
S ++ S + T P + + P SP+ P
Sbjct: 276 SSQSYSTAYPSLPAATVLPQALPMSSA-----PMSGGGSGSPQSGNRVPI 320
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the protein
product of the dentatorubral-pallidoluysian atrophy
(DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the expansion
of a CAG repeat in the DRPLA gene on chromosome 12p. This
results in an extended polyglutamine region in
atrophin-1, that is thought to confer toxicity to the
protein, possibly through altering its interactions with
other proteins. The expansion of a CAG repeat is also the
underlying defect in six other neurodegenerative
disorders, including Huntington's disease. One
interaction of expanded polyglutamine repeats that is
thought to be pathogenic is that with the short glutamine
repeat in the transcriptional coactivator CREB binding
protein, CBP. This interaction draws CBP away from its
usual nuclear location to the expanded polyglutamine
repeat protein aggregates that are characteristic of the
polyglutamine neurodegenerative disorders. This
interferes with CBP-mediated transcription and causes
cytotoxicity.
Length = 979
Score = 74.3 bits (182), Expect = 4e-13
Identities = 72/323 (22%), Positives = 102/323 (31%), Gaps = 33/323 (10%)
Query: 1493 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP 1552
P PG + + PT P P SP + P PS
Sbjct: 175 PQGPPSIQVPPGAALAPSAPPPT-PSAQAVPPQGSPIAA--QPAPQPQQPSPLSLISAPS 231
Query: 1553 AYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS----YSPTS 1607
+ PS + P P + P S P S + P P P+S
Sbjct: 232 LHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSS 291
Query: 1608 PAYSPTSPAYSPTSPAYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-----P 1661
P A S P P+ + +S T PS S P P P +PS P
Sbjct: 292 NPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPRE-QPLPPAPSMPHIKPPP 350
Query: 1662 TSPAYSPTSPGYS-----------PTSPSYSPTSPTYSPTS--PSYNPQSAKYSPSLAYS 1708
T+P + + P PS P P P S P+++P SA + P L
Sbjct: 351 TTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSA-HPPPLQLM 409
Query: 1709 PSSPRLSPASPYSPT---SPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSP 1765
P S L P S + P +S++ + P + P+ +GG P
Sbjct: 410 PQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPF-AQHPFTSGGLPAIGPP 468
Query: 1766 SSPQYSPSAGYSPSAPGYSPSST 1788
S S A ++ G P +
Sbjct: 469 PSLPTSTPAAPPRASSGSQPPGS 491
Score = 68.9 bits (168), Expect = 2e-11
Identities = 70/322 (21%), Positives = 98/322 (30%), Gaps = 17/322 (5%)
Query: 1446 PARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGY 1505
+ P + + P L SP+ L P T +Q SP + S + P P
Sbjct: 217 QPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQPPAPSSRHPQSSHHGPGPPMP 276
Query: 1506 SPSSPG--------YSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYS-- 1555
G +P P S P + PS P P
Sbjct: 277 HALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPHSHTPPSQSALQPQQPPREQP 336
Query: 1556 -PTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSPSYSPTS--PAY 1610
P +PS P + P S + P PS P PS P P+ P S P +
Sbjct: 337 LPPAPSMPHIKPPPTTPIPQLPNQSHKHPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTH 396
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
P S P P P S S P + ++ + P +
Sbjct: 397 HPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHSGLHSGPPQSPF-AQH 455
Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLS-PASPYSPTSPNYSP 1729
P S P+ P + T + S+ P + PSS + P P P P
Sbjct: 456 PFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPPGSALPSSGGCAGPGPPLPPIQIKEEP 515
Query: 1730 TSSSYSPTSPSYSPSSPTYSPS 1751
+ P SP P SP+ P+
Sbjct: 516 LDEAEEPESPPPPPRSPSPEPT 537
Score = 63.2 bits (153), Expect = 1e-09
Identities = 69/321 (21%), Positives = 96/321 (29%), Gaps = 12/321 (3%)
Query: 1443 GMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPG-YSPS 1501
G A S TP + P + + P P + P
Sbjct: 186 GAALAPSAPPPTPSAQ-AVPPQGSPIAAQPAPQPQQPSPLSLISAPSLHPQRLPSPHPPL 244
Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT----YSPSSPGYSPTSPAYSPT 1557
P + P P S + P P PSS P A S
Sbjct: 245 QPQTASQQSPQPPAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQV 304
Query: 1558 SPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA 1616
P P+ + +S T PS S P P P +PS P + P S
Sbjct: 305 PPLPLPSQAQPHSHTPPSQSALQPQQPPRE-QPLPPAPSMPHIKPPPTTPIPQLPNQSHK 363
Query: 1617 YSP--TSPAYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
+ P P+ P PS P P+ P S P++ P S P P P
Sbjct: 364 HPPHLQGPSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPP 423
Query: 1673 YSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSS 1732
S S P + T+ + P + ++ S P + P ++P P +S
Sbjct: 424 VLTQSQSLPPKASTHPHSGLHSGPPQSPFAQHPFTSGGLPAIGPPPSLPTSTPAAPPRAS 483
Query: 1733 SYSPTSPSYSPSSPTYSPSSP 1753
S S S PSS + P
Sbjct: 484 SGSQPPGSALPSSGGCAGPGP 504
Score = 62.4 bits (151), Expect = 2e-09
Identities = 65/299 (21%), Positives = 93/299 (31%), Gaps = 16/299 (5%)
Query: 1446 PARSPVSGTPYHDGMMSP-------GYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGY 1498
PA S H G P G +F + +P + P+ + +
Sbjct: 257 PAPSSRHPQSSHHGPGPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQPH 316
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
S + P S P P P P +P+ P P T P P S P +
Sbjct: 317 SHTPPSQSALQPQQPPRE---QPLPP--APSMPHIKPPPTTPIPQLPNQSHKHPPHL-QG 370
Query: 1559 PSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA 1616
PS P PS P P+ P S P++ P S P P P S +
Sbjct: 371 PSPFPQMPSNLPPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQS 430
Query: 1617 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
P + + + P + P S P+ P + T A S G P
Sbjct: 431 LPPKASTHPHSGLHSGPPQSPF-AQHPFTSGGLPAIGPPPSLPTSTPAAPPRASSGSQPP 489
Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYS 1735
+ + P P Q + A P SP P SP + +P+ +S S
Sbjct: 490 GSALPSSGGCAGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSPEPTVVNTPSHASQS 548
Score = 60.5 bits (146), Expect = 7e-09
Identities = 65/284 (22%), Positives = 91/284 (32%), Gaps = 26/284 (9%)
Query: 1429 IELQLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGM 1488
+ LQ PS FG+ ++ P P P + S
Sbjct: 284 VFLQHPSSNPPQPFGLAQSQVPPLPLPSQA---------------QPHSHTPPSQ----S 324
Query: 1489 AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1548
A P P P P +PS P P P P S P + P+ P P
Sbjct: 325 ALQPQQPPREQPLPP--APSMPHIKPPPTTPIPQLPNQSHKHPPHL-QGPSPFPQMPSNL 381
Query: 1549 PTSPAYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
P PA P S P++ P S P P P S S P + ++ +
Sbjct: 382 PPPPALKPLSSLPTHHPPSAHPPPLQLMPQSQPLQSVPAQPPVLTQSQSLPPKASTHPHS 441
Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1666
P + P S P+ P PS ++P+ P + S S S P+S
Sbjct: 442 GLHSGPPQSPF-AQHPFTSGGLPAIGPP-PSLPTSTPAAPPRASSGSQPPGSALPSSGGC 499
Query: 1667 SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPS 1710
+ P P P P SP P+S P++ +PS
Sbjct: 500 AGPGPPLPPIQIKEEPLDEAEEPESPPPPPRSPSPEPTVVNTPS 543
Score = 52.0 bits (124), Expect = 3e-06
Identities = 78/355 (21%), Positives = 107/355 (30%), Gaps = 43/355 (12%)
Query: 1468 SPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYS 1527
SP+ R SP + Q S S S SS S TSP S
Sbjct: 27 SPDGRASPTNEDQRSS-------GRNSPSAASTSSNDSKAESTKKPNKKIKEEATSPLKS 79
Query: 1528 PTSPGYSPTSPTYSP--SSPGYSPTSPAYSPTSPSYSP--------TSPSYSPTSPSYSP 1577
P S T P + S T P SPS +S S S S
Sbjct: 80 TKRQREKPASDTEEPERVTAKKSKTQELSRPNSPSEGEGEGEGEGESSDSRSVNEEGSSD 139
Query: 1578 T--------SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP 1629
S S S SP + + S P P P + +P+ P +P
Sbjct: 140 PKDIDQDNRSSSPSIPSPQDNESDSDSSAQQQLLQPQGPPSIQVPPGAAL-APSAPPPTP 198
Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG-YSPTSPSYSPTSPTYS 1688
S P SP + P P+ S + P + P P +
Sbjct: 199 SAQAVPPQGSPIAAQ--PAPQPQQPSPLSLISAPSLHPQRLPSPHPPLQPQTASQQSPQP 256
Query: 1689 PTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP-- 1746
P S +PQS+ + P P + + P P+S P + S P PS
Sbjct: 257 PAPSSRHPQSSHHGP-GPPMPHALQQGPVFLQHPSSNPPQPFGLAQSQVPPLPLPSQAQP 315
Query: 1747 -TYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSST---SQYTPQTNR 1797
+++P S P P +PS P P T Q Q+++
Sbjct: 316 HSHTPPSQSALQPQQPPREQPLPP-------APSMPHIKPPPTTPIPQLPNQSHK 363
>gnl|CDD|132721 cd02655, RNAP_beta'_C, Largest subunit (beta') of Bacterial
DNA-dependent RNA polymerase (RNAP), C-terminal domain.
Bacterial RNA polymerase (RNAP) is a large multi-subunit
complex responsible for the synthesis of all RNAs in the
cell. This family also includes the eukaryotic
plastid-encoded RNAP beta" subunit. Structure studies
suggest that RNAP complexes from different organisms
share a crab-claw-shape structure with two pincers
defining a central cleft. Beta' and beta, the largest and
the second largest subunits of bacterial RNAP, each makes
up one pincer and part of the base of the cleft. The
C-terminal domain includes a G loop that forms part of
the floor of the downstream DNA-binding cavity. The
position of the G loop may determine the switch of the
bridge helix between flipped-out and normal alpha-helical
conformations.
Length = 204
Score = 68.7 bits (169), Expect = 8e-13
Identities = 27/49 (55%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREI 1113
LV GE +G +AAQSIGEP TQ+T+ TFH GV A ++T G+PR+ E+
Sbjct: 1 KLVELGEAVGIIAAQSIGEPGTQLTMRTFHTGGV-ATDITQGLPRVEEL 48
Score = 58.3 bits (142), Expect = 3e-09
Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 43/157 (27%)
Query: 1298 DARRTTSNHLIEIIEVLGIEAVRRALLDEL-------------------------RVVIS 1332
+AR+ + L+ I + LG EAV++ L++E+ +V I
Sbjct: 50 EARKINPHDLLRI-KFLGPEAVQKYLVEEIQKVYRSQGVNINDKHIEIIVRQMTSKVKII 108
Query: 1333 FDGS---------------YVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSF 1377
G N R L + Y L+ IT+ +N + SF
Sbjct: 109 DPGDSGFLPGELVDLNEFEEENKRLLLLGKKPAKYEPVLLGITKASLNTE--SFISAASF 166
Query: 1378 EETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
+ET +L +AA+ + D+LRG+ EN++LG+L P GTG
Sbjct: 167 QETTKVLTEAAIEGKIDWLRGLKENVILGRLIPAGTG 203
>gnl|CDD|185616 PTZ00436, PTZ00436, 60S ribosomal protein L19-like protein;
Provisional.
Length = 357
Score = 71.1 bits (173), Expect = 1e-12
Identities = 25/129 (19%), Positives = 64/129 (49%)
Query: 1543 SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
++P + +PA + P+ + +P+ + +P+ + P+ + P+ + P+ + P+
Sbjct: 220 AAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPA 279
Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
+ PA + PA + +PA + +P+ + +P+ + P+ + P+ + T P+ +
Sbjct: 280 KAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAA 339
Query: 1663 SPAYSPTSP 1671
PA + +P
Sbjct: 340 PPAKAAAAP 348
Score = 70.7 bits (172), Expect = 2e-12
Identities = 25/128 (19%), Positives = 63/128 (49%)
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
+PA + +P+ + P+ + +P+ + +P+ + P+ + P+ + P+ + PA
Sbjct: 221 APAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 280
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
+ PA + PA + +P+ + +P+ + +P+ + P+ + P+ + T PA +
Sbjct: 281 AAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAP 340
Query: 1671 PGYSPTSP 1678
P + +P
Sbjct: 341 PAKAAAAP 348
Score = 70.0 bits (170), Expect = 3e-12
Identities = 26/141 (18%), Positives = 64/141 (45%)
Query: 1489 AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1548
A +P+ ++P + ++P + P + +P + +P + P + + P +
Sbjct: 208 AAAPSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKA 267
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1608
PA + P+ + P+ + P+ + +P+ + +P+ + +P+ + P+ + P
Sbjct: 268 AAPPAKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPP 327
Query: 1609 AYSPTSPAYSPTSPAYSPTSP 1629
A + T PA + PA + +P
Sbjct: 328 AKAATPPAKAAAPPAKAAAAP 348
Score = 69.6 bits (169), Expect = 4e-12
Identities = 24/128 (18%), Positives = 63/128 (49%)
Query: 1537 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1596
+P + ++P + PA + +P+ + +P+ + P+ + P+ + P+ + P+
Sbjct: 221 APAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 280
Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
+ P+ + PA + +PA + +PA + +P+ + P+ + P+ + T P+ +
Sbjct: 281 AAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAP 340
Query: 1657 PSYSPTSP 1664
P+ + +P
Sbjct: 341 PAKAAAAP 348
Score = 69.6 bits (169), Expect = 4e-12
Identities = 24/128 (18%), Positives = 63/128 (49%)
Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1617
+P+ + +P+ + P+ + +P+ + +P+ + P+ + P+ + PA + PA
Sbjct: 221 APAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 280
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 1677
+ PA + P+ + +P+ + +P+ + +P+ + P+ + PA + T P +
Sbjct: 281 AAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAP 340
Query: 1678 PSYSPTSP 1685
P+ + +P
Sbjct: 341 PAKAAAAP 348
Score = 69.6 bits (169), Expect = 4e-12
Identities = 25/133 (18%), Positives = 63/133 (47%)
Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP 1619
S +P+ + +P+ + P+ + +P+ + +P+ + P+ + PA + PA +
Sbjct: 216 SAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAA 275
Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
PA + P+ + P+ + +P+ + +P+ + +P+ + PA + P + T P+
Sbjct: 276 APPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPA 335
Query: 1680 YSPTSPTYSPTSP 1692
+ P + +P
Sbjct: 336 KAAAPPAKAAAAP 348
Score = 69.2 bits (168), Expect = 5e-12
Identities = 24/128 (18%), Positives = 62/128 (48%)
Query: 1530 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1589
+P + +P + + P + +PA + +P+ + P+ + P+ + P+ + P+
Sbjct: 221 APAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 280
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
+ P+ + P+ + +PA + +PA + +PA + P+ + P+ + T P+ +
Sbjct: 281 AAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAP 340
Query: 1650 PSYSPTSP 1657
P+ + +P
Sbjct: 341 PAKAAAAP 348
Score = 68.8 bits (167), Expect = 7e-12
Identities = 24/128 (18%), Positives = 61/128 (47%)
Query: 1523 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1582
+P + +P + P + ++P + +PA + P+ + P+ + P+ + P+
Sbjct: 221 APAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 280
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
+ P+ + P+ + +P+ + +PA + +PA + PA + P+ + T P+ +
Sbjct: 281 AAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAP 340
Query: 1643 PSYSPTSP 1650
P+ + +P
Sbjct: 341 PAKAAAAP 348
Score = 68.4 bits (166), Expect = 9e-12
Identities = 24/129 (18%), Positives = 60/129 (46%)
Query: 1508 SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
++P + +P + P + +P + +P + + P + PA + P+ + P+
Sbjct: 220 AAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPA 279
Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1627
+ P+ + P+ + +P+ + +P+ + +P+ + PA + PA + T PA +
Sbjct: 280 KAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAA 339
Query: 1628 SPSYSPTSP 1636
P+ + +P
Sbjct: 340 PPAKAAAAP 348
Score = 68.4 bits (166), Expect = 9e-12
Identities = 24/128 (18%), Positives = 60/128 (46%)
Query: 1516 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1575
+P + +P + P + +P + ++P + PA + P+ + P+ + P+
Sbjct: 221 APAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAAPPAK 280
Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
+ P+ + P+ + +P+ + +P+ + +PA + PA + PA + T P+ +
Sbjct: 281 AAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPAKAAAP 340
Query: 1636 PSYSPTSP 1643
P+ + +P
Sbjct: 341 PAKAAAAP 348
Score = 68.1 bits (165), Expect = 1e-11
Identities = 24/136 (17%), Positives = 62/136 (45%)
Query: 1487 GMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG 1546
G + ++P + ++P + + P + +P + +P + P + P + + P
Sbjct: 213 GKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPA 272
Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
+ PA + P+ + P+ + +P+ + +P+ + +P+ + P+ + P+ + T
Sbjct: 273 KAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAT 332
Query: 1607 SPAYSPTSPAYSPTSP 1622
PA + PA + +P
Sbjct: 333 PPAKAAAPPAKAAAAP 348
Score = 65.7 bits (159), Expect = 7e-11
Identities = 24/127 (18%), Positives = 60/127 (47%)
Query: 1567 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP 1626
S +P+ + +P+ + P+ + +P+ + +P+ + PA + PA + PA +
Sbjct: 216 SAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAA 275
Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
P+ + P+ + P+ + +P+ + +P+ + +PA + P + P+ + T P
Sbjct: 276 APPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAATPPA 335
Query: 1687 YSPTSPS 1693
+ P+
Sbjct: 336 KAAAPPA 342
Score = 55.3 bits (132), Expect = 2e-07
Identities = 25/128 (19%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1654
S +P+ + +PA + PA + +PA + +P+ + P+ + P+ + P+ +
Sbjct: 216 SAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAA 275
Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
P+ + PA + P + +P+ + +P + +P+ ++A A P+
Sbjct: 276 APPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPA---KAAAPPAKAAAPPAKAAT 332
Query: 1715 SPASPYSP 1722
PA +P
Sbjct: 333 PPAKAAAP 340
Score = 52.3 bits (124), Expect = 2e-06
Identities = 29/158 (18%), Positives = 66/158 (41%), Gaps = 19/158 (12%)
Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
S +PA + +PA + PA + +P+ + +P+ + P+ + P+ + P+ +
Sbjct: 216 SAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAA 275
Query: 1662 TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS 1721
PA + P + P+ + +P + +P AK + + A + + P + A P
Sbjct: 276 APPAKAAAPPAKAAAPPAKAAAAPAKAAAAP------AKAAAAPAKAAAPPAKAAAPP-- 327
Query: 1722 PTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGG 1759
+ + T P+ + + P + ++P G
Sbjct: 328 -----------AKAATPPAKAAAPPAKAAAAPVGKKAG 354
Score = 40.7 bits (94), Expect = 0.005
Identities = 25/145 (17%), Positives = 58/145 (40%), Gaps = 6/145 (4%)
Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYS 1708
+PS ++ + +P A +P P + +P +P + P A P+ A +
Sbjct: 210 APSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAA 269
Query: 1709 PSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP 1768
P + +P + + P + + + +P+ + ++P + ++P A P+
Sbjct: 270 PPAKAAAPPAK-AAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAA-----PPAKA 323
Query: 1769 QYSPSAGYSPSAPGYSPSSTSQYTP 1793
P+ +P A +P + + P
Sbjct: 324 AAPPAKAATPPAKAAAPPAKAAAAP 348
Score = 39.5 bits (91), Expect = 0.013
Identities = 24/139 (17%), Positives = 55/139 (39%), Gaps = 6/139 (4%)
Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY 1701
+PS ++ + +P + +P A P +P + +P P + P A
Sbjct: 210 APSGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAA 269
Query: 1702 SPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNP 1761
P+ A +P + +P + + P + + + + +P+ + ++P + + P A
Sbjct: 270 PPAKAAAPPAKAAAPPAK-AAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKAAA--- 325
Query: 1762 DYSPSSPQYSPSAGYSPSA 1780
P+ P+ +P A
Sbjct: 326 --PPAKAATPPAKAAAPPA 342
>gnl|CDD|227430 COG5099, COG5099, RNA-binding protein of the Puf family,
translational repressor [Translation, ribosomal structure
and biogenesis].
Length = 777
Score = 65.2 bits (159), Expect = 3e-10
Identities = 71/343 (20%), Positives = 110/343 (32%), Gaps = 40/343 (11%)
Query: 1486 GGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSP--TSPGYSPTSPTYSPS 1543
+ S S +S SP S +S + + SP S +S ++ P +
Sbjct: 7 NNLLPSIKSQLHHSKKSPPSSTTSQELMNGNSTPNSFSPIPSKASSSATFTLNLPINNSV 66
Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1603
+ + +S + S S+S S + S S PS S +PS S + S S S +
Sbjct: 67 NHKITSSSSSRRKPSGSWSVAISSSTSGSQSLLMELPS-SSFNPSTSSRNKSNSALSSTQ 125
Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS-----PSYSPTSPSYSPTSPSY-SPTSP 1657
+ + S + + S S P +P + S +S +P S S T+
Sbjct: 126 QGNANSSVTLSSSTAS-SMFNSNKLPLPNPNHSNSATTNQSGSSFINTPASSSSQPLTNL 184
Query: 1658 SYSPTSPA----YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
S Y S S T + TSPS+NP SP+ +S S
Sbjct: 185 VVSSIKRFPYLTSLSPFFNYLIDPSSDSAT--ASADTSPSFNP-PPNLSPNNLFSTSDLS 241
Query: 1714 LSPASPYSPTSPNYSPTSSSYSPTS--------------PSYSPSSPTYSPSSPYNAGGG 1759
P + + + +SS TS S S S SS
Sbjct: 242 PLPDTQSVENNIILNSSSSINELTSIYGSVPSIRNLRGLNSALVSFLNVSSSS------L 295
Query: 1760 NPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTT 1802
SP+ SPS ++ + TT
Sbjct: 296 AFSALNGKEV-SPTG--SPSTRSFARVLPKSSPNNLLTEILTT 335
Score = 53.2 bits (128), Expect = 1e-06
Identities = 72/386 (18%), Positives = 123/386 (31%), Gaps = 45/386 (11%)
Query: 1467 FSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGY 1526
F+ NL ++ + + + S +S + + S P S +P
Sbjct: 56 FTLNLPINNSVNHKITSSSSSRRKPSGS---WSVAISSSTSGSQSLLMELP-SSSFNPST 111
Query: 1527 SPTSPGYSPTSPTYS---PSSPGYSPTSPAY---SPTSPSYSPTS-----PSYSPTSPSY 1575
S + S S T SS S ++ + S P +P + S +S
Sbjct: 112 SSRNKSNSALSSTQQGNANSSVTLSSSTASSMFNSNKLPLPNPNHSNSATTNQSGSSFIN 171
Query: 1576 SPTSPSY-SPTSPSYSPTSPSYSPTS--PSYSPTSPAYSPTSPAYSPTSPA--------- 1623
+P S S T+ S TS P ++ S ++ A + TSP+
Sbjct: 172 TPASSSSQPLTNLVVSSIKRFPYLTSLSPFFNYLIDPSSDSATASADTSPSFNPPPNLSP 231
Query: 1624 ---YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1680
+S + S P + S + + +S TS S S + +
Sbjct: 232 NNLFSTSDLSPLPDTQSV-ENNIILNSSSSINELTSIYGSVPSIRNLRGLNSALVSFLNV 290
Query: 1681 SPTSPTYS-----PTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYS 1735
S +S +S SP+ +P + ++ L SSP + S +
Sbjct: 291 SSSSLAFSALNGKEVSPTGSPSTRSFARVL--PKSSPNNLLTEILTTGVNPPQSLPSLLN 348
Query: 1736 PTSPSYSPSSPTYSPSS---PYNAGGGNPDYSPSSPQYS---PSAGYSPSAPGYSPSSTS 1789
P S S + S P N S S+ YS PS S S + +
Sbjct: 349 PVFLSTSTGFSLTNLSGYLNPNKNLKKNTLSSLSNLGYSSNVPSPSSSESTRNILGNISP 408
Query: 1790 QYTPQTNRDDSTTKDDKNTKGDKSSR 1815
+ +N + + K + SS
Sbjct: 409 NFKTSSNLTNLNS-LLKEKLSNSSSV 433
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 63.8 bits (155), Expect = 6e-10
Identities = 61/250 (24%), Positives = 84/250 (33%), Gaps = 23/250 (9%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSP 1591
P + SP P P P SP +Y P P
Sbjct: 329 PPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPR--PLSPYTAYEDLKP---P 383
Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
TSP PT PS SP S P P P SP S S P +
Sbjct: 384 TSPI--PTPPSSSPASS--KSVDAVAKPAEPDVVP-----SPGSASNVPEVEPAQVEAKK 434
Query: 1652 YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS 1711
P SP Y+ PTSP SPT+P+ S + + + P+ + + + A +P
Sbjct: 435 TRPLSP-YARYEDLKPPTSP--SPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPP 491
Query: 1712 PRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYS 1771
+ P SPY+ PTS S + +PSS +A P + + Q+
Sbjct: 492 ANMRPLSPYAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSA----PPTALADEQHH 547
Query: 1772 PSAGYSPSAP 1781
P +P
Sbjct: 548 AQPKPRPLSP 557
Score = 63.0 bits (153), Expect = 1e-09
Identities = 57/207 (27%), Positives = 78/207 (37%), Gaps = 18/207 (8%)
Query: 1528 PTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1587
PTSP PT P+ SP+S P P P SP S S P +
Sbjct: 383 PTSP--IPTPPSSSPASS--KSVDAVAKPAEPDVVP-----SPGSASNVPEVEPAQVEAK 433
Query: 1588 SYSPTSP--SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1645
P SP Y P PTSP SPT+P S + + + P+ P + + + +
Sbjct: 434 KTRPLSPYARYEDLKP---PTSP--SPTAPTGVSPSVSSTSSVPA-VPDTAPATAATDAA 487
Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSL 1705
+P + P SP Y+ PTSP + +P+S + P +A
Sbjct: 488 APPPANMRPLSP-YAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQH 546
Query: 1706 AYSPSSPRLSPASPYSPTSPNYSPTSS 1732
P LSP + Y P SPT S
Sbjct: 547 HAQPKPRPLSPYTMYEDLKPPTSPTPS 573
Score = 61.5 bits (149), Expect = 3e-09
Identities = 54/213 (25%), Positives = 79/213 (37%), Gaps = 15/213 (7%)
Query: 1482 SPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYS 1541
SPY P +SP +P S SS + P ++ P
Sbjct: 372 SPYTAYEDLKPPTSPIPTPPSSS-PASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQV 430
Query: 1542 PSSPGYSPTSP--AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1599
+ P SP Y P PTSP SPT+P+ S S + + P+ P + +
Sbjct: 431 EAKKT-RPLSPYARYEDLKP---PTSP--SPTAPTGVSPSVSSTSSVPA-VPDTAPATAA 483
Query: 1600 SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1659
+ + +P P SP Y+ PTSPS + +P+S + + +P +
Sbjct: 484 TDAAAPPPANMRPLSP-YAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALA 542
Query: 1660 SP---TSPAYSPTSPGYSPTSPSYSPTSPTYSP 1689
P P SP Y+ PTSPT SP
Sbjct: 543 DEQHHAQPKPRPLSP-YTMYEDLKPPTSPTPSP 574
Score = 54.9 bits (132), Expect = 3e-07
Identities = 55/235 (23%), Positives = 78/235 (33%), Gaps = 12/235 (5%)
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--AYSPTSPAYSP 1619
P + + SP P P P SP AY P P
Sbjct: 329 PPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPR--PLSPYTAYEDLKP---P 383
Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
TSP PT PS SP S + SP S S P + P SP
Sbjct: 384 TSP--IPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSP- 440
Query: 1680 YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
Y+ PTSPS + SPS++ + S P + +P + + +P ++ P SP
Sbjct: 441 YARYEDLKPPTSPSPTAPTGV-SPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSP 499
Query: 1740 SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQ 1794
Y+ P+SP A S+ + +P +Q P+
Sbjct: 500 -YAVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPR 553
Score = 44.5 bits (105), Expect = 5e-04
Identities = 54/235 (22%), Positives = 74/235 (31%), Gaps = 30/235 (12%)
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP--SYSPTSPSYSP 1640
P + + SP P P P SP +Y P P
Sbjct: 329 PPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVP--RPLSPYTAYEDLKP---P 383
Query: 1641 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAK 1700
TSP PT PS SP S P P P SP + P P + ++
Sbjct: 384 TSPI--PTPPSSSPASSK--SVDAVAKPAEPDVVP-SPGSASNVPEVEP-AQVEAKKTRP 437
Query: 1701 YSPSLAY-------SPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYS--PSSPTYSPS 1751
SP Y SPS + SP ++ + + T+ + + P P
Sbjct: 438 LSPYARYEDLKPPTSPSPTAPTGVSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPL 497
Query: 1752 SPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDK 1806
SPY Y P SPS + +PSST++ N T D+
Sbjct: 498 SPY------AVYDDLKPPTSPSP--AAPVGKVAPSSTNEVVKVGNSAPPTALADE 544
>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional.
Length = 1355
Score = 62.8 bits (152), Expect = 2e-09
Identities = 60/313 (19%), Positives = 96/313 (30%), Gaps = 43/313 (13%)
Query: 1467 FSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGY 1526
+ P L +P+T+ V A + T++ ++ + + P S P PT
Sbjct: 307 YDPLLNGAPITEP-----VAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAW- 360
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
PG P +P+ GY S P P P P Y+P +
Sbjct: 361 -QPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQ-PAQQ 418
Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1646
P Y+P P P Y+P + + +++P +Y
Sbjct: 419 PYYAPA-PEQPAQQPYYAPAPEQPVAGNAWQAE------EQQSTFAP-QSTYQTEQTYQQ 470
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT-----------------SPTYSP 1689
P + P P P P T P+ P + Y P
Sbjct: 471 PAAQEPLYQQPQPVEQQPVVEP-EPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQP 529
Query: 1690 T-SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTY 1748
P P+ K S +PS + P + SP S + T + + ++P +
Sbjct: 530 IPEPVKEPEPIKSSLK---APSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVF 586
Query: 1749 SPSSPYNAGGGNP 1761
S A G P
Sbjct: 587 SL-----ANSGGP 594
Score = 50.9 bits (121), Expect = 7e-06
Identities = 40/203 (19%), Positives = 56/203 (27%), Gaps = 14/203 (6%)
Query: 1553 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1612
A P Y P T P + + + + S++ + T P S P P
Sbjct: 299 ATQPEYDEYDPLLNGAPITEPVAV--AAAATTATQSWAAPVEPVTQTPPVASVDVPPAQP 356
Query: 1613 T---SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1669
T P P + P +P Y S P P P P Y+P
Sbjct: 357 TVAWQPVPGPQTG-----EPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPA 411
Query: 1670 SPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY--SPSSPRLSPASPYSPTSPNY 1727
+ P Y+P P P Y P + A+ +P S Y
Sbjct: 412 AEQ-PAQQPYYAPA-PEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQ 469
Query: 1728 SPTSSSYSPTSPSYSPSSPTYSP 1750
P + P P P
Sbjct: 470 QPAAQEPLYQQPQPVEQQPVVEP 492
Score = 47.4 bits (112), Expect = 7e-05
Identities = 39/225 (17%), Positives = 63/225 (28%), Gaps = 13/225 (5%)
Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP-----SYSPTSPSYSPTSP 1657
Y+ A P +S + A P Y P T P + + + S++
Sbjct: 280 YTARGVAADPDDVLFS-GNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVE 338
Query: 1658 SYSPTSPAYSPTSPGYSPT-----SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSP 1712
+ T P S P PT P P +P Y QS P++ Y+
Sbjct: 339 PVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQ 398
Query: 1713 RLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
+ P Y +P P Y+P+ G ++P
Sbjct: 399 QPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAP 458
Query: 1773 SAGYSPSAPGYSP--SSTSQYTPQTNRDDSTTKDDKNTKGDKSSR 1815
+ Y P PQ + + + K +R
Sbjct: 459 QSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPAR 503
Score = 47.4 bits (112), Expect = 9e-05
Identities = 37/207 (17%), Positives = 60/207 (28%), Gaps = 21/207 (10%)
Query: 1584 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT-- 1641
P Y P T P + A + + +++ + T P S P PT
Sbjct: 302 PEYDEYDPLLNGAPITEPVAV--AAAATTATQSWAAPVEPVTQTPPVASVDVPPAQPTVA 359
Query: 1642 ---SPSYSPTSPSYSPTSPSYSPTSPAYS-PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
P P +P Y Y+ P P P P Y+P + Q
Sbjct: 360 WQPVPGPQTGEPVIAPAPEGYPQ-QSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQ-PAQ 417
Query: 1698 SAKYSPSLAYSPSSPRLSPA--SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYN 1755
Y+P+ P +PA P + + S+++P +Y P++
Sbjct: 418 QPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAP-QSTYQTEQTYQQPAA--- 473
Query: 1756 AGGGNPDYSPSSPQYSPSAGYSPSAPG 1782
+ PQ P
Sbjct: 474 -----QEPLYQQPQPVEQQPVVEPEPV 495
Score = 42.0 bits (98), Expect = 0.003
Identities = 36/215 (16%), Positives = 52/215 (24%), Gaps = 24/215 (11%)
Query: 1432 QLPSYMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFS 1491
Q Y + P + PV + + P +P AQ Y
Sbjct: 382 QQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQP 441
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1551
+ + Y P + P P P P T
Sbjct: 442 VAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEP-EPVVEETK 500
Query: 1552 PAYSPT-----------------SPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
PA P + Y P P P P S S + P
Sbjct: 501 PARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPE-----PIKSSLKAPSVAAVPPV 555
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1628
+ + SP S A T A + +P +S +
Sbjct: 556 EAAAAVSPLASGVKKATLATGAAATVAAPVFSLAN 590
Score = 38.5 bits (89), Expect = 0.040
Identities = 34/201 (16%), Positives = 52/201 (25%), Gaps = 22/201 (10%)
Query: 1455 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 1514
Y++ + P P + AQ PY P P Y+P+ + +
Sbjct: 392 QYNEPLQQPVQPQQPYYAPAAEQPAQ-QPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAE 450
Query: 1515 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT--- 1571
Y P + P P P P T P+ P
Sbjct: 451 EQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEP-EPVVEETKPARPPLYYF 509
Query: 1572 --------------SPSYSPTSPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
+ Y P P S S + P + + SP S
Sbjct: 510 EEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVK 569
Query: 1615 PAYSPTSPAYSPTSPSYSPTS 1635
A T A + +P +S +
Sbjct: 570 KATLATGAAATVAAPVFSLAN 590
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein;
Provisional.
Length = 617
Score = 62.2 bits (151), Expect = 2e-09
Identities = 37/210 (17%), Positives = 54/210 (25%), Gaps = 20/210 (9%)
Query: 1563 PTSPSYSPTSPSYSPTSPSYS-PTSPSYSP-TSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1620
PS +P P + S P P Y P P P
Sbjct: 87 TVDPSAGEPAPP-PPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPA 145
Query: 1621 SPAYSPTSP--SYSPTSPSYSPTSPS--YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
PAY ++ + Y + P +P SP S + Y
Sbjct: 146 YPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQ-----ERDREPYDAG 200
Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS---PRLSPASPYSPTSPNYSPTSSS 1733
P Y Y P ++ + P + R P P +P
Sbjct: 201 RPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAP-----VVP 255
Query: 1734 YSPTSPSYSPSSPTYSPSSPYNAGGGNPDY 1763
P++P + P +P NP Y
Sbjct: 256 IRPSAPGPLAAQPAPAPGPGEPTARLNPKY 285
Score = 56.4 bits (136), Expect = 1e-07
Identities = 35/197 (17%), Positives = 51/197 (25%), Gaps = 14/197 (7%)
Query: 1549 PTSPAYSPTSPSYSPTSPSYS-PTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
P+ +P P + S P P Y P P+ P
Sbjct: 87 TVDPSAGEPAPP-PPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPA 145
Query: 1607 SPAYSPTSP--AYSPTSPAYSPTSPS--YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
PAY A+ + Y + P +P SP S + Y
Sbjct: 146 YPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQ-----ERDREPYDAG 200
Query: 1663 SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSP 1722
P Y Y P + P T P A + P +P P P
Sbjct: 201 RPEYDQRRRDYDHPRPDWDR--PRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRP 258
Query: 1723 TSPNYSPTSSSYSPTSP 1739
++P + +P
Sbjct: 259 SAPGPLAAQPAPAPGPG 275
Score = 45.2 bits (107), Expect = 3e-04
Identities = 32/189 (16%), Positives = 46/189 (24%), Gaps = 22/189 (11%)
Query: 1468 SPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSS--PGYSPTSPGYSPTS-P 1524
+P + T P G + P PG P P P Y P
Sbjct: 96 APPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQQRPEP 155
Query: 1525 GYSPTSP----------GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1574
G P + G+ P +P SP+S Y P Y
Sbjct: 156 GAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQ-----ERDREPYDAGRPEYDQRRRD 210
Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT 1634
Y P + + P P + P P++P
Sbjct: 211 YDHPRPDWDRPRRDRTDR-PEPPPGAGHVHRGGP---GPPERDDAPVVPIRPSAPGPLAA 266
Query: 1635 SPSYSPTSP 1643
P+ +P
Sbjct: 267 QPAPAPGPG 275
Score = 43.3 bits (102), Expect = 0.001
Identities = 32/150 (21%), Positives = 45/150 (30%), Gaps = 15/150 (10%)
Query: 1492 PTSSPGYSPSSPGYSPSS-PGYSPTSP---GYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
PT+ P Y P Y PG P + G+ G+ P +P SP S +P
Sbjct: 140 PTARPAY----PAYQQRPEPGAWPRAADDYGWQQQRLGFPPRAPYASPASY-----APEQ 190
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
Y P Y Y P + + P P + P
Sbjct: 191 ERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDR-PEPPPGAGHVHRGGPGPPERD 249
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
A +P A P +P+ P P+
Sbjct: 250 DAPVVPIRPSAPGPLAAQP-APAPGPGEPT 278
Score = 37.9 bits (88), Expect = 0.061
Identities = 24/142 (16%), Positives = 36/142 (25%), Gaps = 30/142 (21%)
Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS--PTSP 1725
P +P T P P + + R PT+
Sbjct: 87 TVDPSAGEPAPPPPHARRTSEPELPRPGRRP---YEGYGGPRADDRPPGLPRQDQLPTAR 143
Query: 1726 NYSPTSSSYSPTSPSYSPSS-PTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYS 1784
P P+Y P P + + G Q G+ P AP
Sbjct: 144 ----------PAYPAYQQRPEPGAWPRAADDYG----------WQQ-QRLGFPPRAP--- 179
Query: 1785 PSSTSQYTPQTNRDDSTTKDDK 1806
+S + Y P+ RD +
Sbjct: 180 YASPASYAPEQERDREPYDAGR 201
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 61.3 bits (148), Expect = 4e-09
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 2/126 (1%)
Query: 1585 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
TS + P+ +P + PA +PTS A A +PT + P+ +P +
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAA 92
Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
P+ +P + A + TS + +P+ + TS P+ + Q + P
Sbjct: 93 SRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSP--PP 150
Query: 1705 LAYSPS 1710
AY+ S
Sbjct: 151 FAYTRS 156
Score = 56.3 bits (135), Expect = 1e-07
Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 1/125 (0%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
+ +S PA +P + P+ +PTS + + +PT +
Sbjct: 24 TNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFD 83
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP-SYSPTSPSY 1652
P+ +P + PA +P A A + TS + + +P+ + TS S P ++
Sbjct: 84 PAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAH 143
Query: 1653 SPTSP 1657
+ SP
Sbjct: 144 TQHSP 148
Score = 55.5 bits (133), Expect = 2e-07
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 1/116 (0%)
Query: 1557 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA 1616
TS + P+ +P + P+ +PTS + + +PT + PA +P A
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAA 92
Query: 1617 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPAYSPTSP 1671
PA +P + + + TS + + +P+ + TS S P A++ SP
Sbjct: 93 SRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSP 148
Score = 55.1 bits (132), Expect = 3e-07
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 4/124 (3%)
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
TS A P+ +P + P+ +PTS + + +PT + P+ +P A
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAA 92
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPA 1665
PA +P A + + TS + + +P+ + TS + P+ SP A
Sbjct: 93 SRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFA 152
Query: 1666 YSPT 1669
Y+ +
Sbjct: 153 YTRS 156
Score = 55.1 bits (132), Expect = 3e-07
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 1/125 (0%)
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
TS + P+ +P + P+ +PTS + + +PT A PA +P A
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAA 92
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
P+ +P + + + TS + + +P+ + TS A P T S P
Sbjct: 93 SRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAH-TQHSPPPF 151
Query: 1684 SPTYS 1688
+ T S
Sbjct: 152 AYTRS 156
Score = 53.6 bits (128), Expect = 9e-07
Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 4/124 (3%)
Query: 1522 TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1581
TS P +P P +PTS A + +PT + P+ +P +
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAA 92
Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY----SPTSPS 1637
P+ +P + + + TS A + +PA + TS A P+ SP +
Sbjct: 93 SRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFA 152
Query: 1638 YSPT 1641
Y+ +
Sbjct: 153 YTRS 156
Score = 52.0 bits (124), Expect = 2e-06
Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 4/124 (3%)
Query: 1515 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1574
TS P +P P +P+S A +PT + P+ +P +
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAA 92
Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY----SPTSPS 1630
P+ +P + + + TS + + +PA + TS A PA SP +
Sbjct: 93 SRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFA 152
Query: 1631 YSPT 1634
Y+ +
Sbjct: 153 YTRS 156
Score = 50.1 bits (119), Expect = 1e-05
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 4/117 (3%)
Query: 1508 SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
P +P P +PTS +P+ PA +P + P+
Sbjct: 40 PDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPA 99
Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY----SPTSPAYSPT 1620
+P + + + TS + + +P+ + TS + PA SP AY+ +
Sbjct: 100 VAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFAYTRS 156
Score = 49.3 bits (117), Expect = 2e-05
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 1/108 (0%)
Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1665
TS A PA +P A P+ +PTS + + +PT + P+ +P A
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAA 92
Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTS-PSYNPQSAKYSPSLAYSPSSP 1712
P +P + + TS + A S A P
Sbjct: 93 SRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDP 140
Score = 48.2 bits (114), Expect = 3e-05
Identities = 24/128 (18%), Positives = 48/128 (37%), Gaps = 5/128 (3%)
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
+ P + TS A PA +P + P+ +PTS + + +PT +
Sbjct: 23 NTNIPIPELH--TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASE 80
Query: 1661 PTSPAYSPTSPGYSPTSPSYSPT---SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
PA +P P+ +P +P + A +P+ A + ++ +
Sbjct: 81 KFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDP 140
Query: 1718 SPYSPTSP 1725
+ ++ SP
Sbjct: 141 AAHTQHSP 148
Score = 47.0 bits (111), Expect = 7e-05
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 4/117 (3%)
Query: 1501 SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS 1560
P +P P +PTS +PT P +P A P+
Sbjct: 40 PDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPA 99
Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPAYSPT 1613
+P + + + TS + + +P+ + TS + P+ SP AY+ +
Sbjct: 100 VAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFAYTRS 156
Score = 45.5 bits (107), Expect = 2e-04
Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 1/109 (0%)
Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1553
P +P P +PTS +PT P +P PA
Sbjct: 40 PDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPA 99
Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSP 1601
+P + + + TS + + +P+ + TS S P +++ SP
Sbjct: 100 VAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSP 148
Score = 44.7 bits (105), Expect = 5e-04
Identities = 26/124 (20%), Positives = 46/124 (37%), Gaps = 6/124 (4%)
Query: 1634 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
TS + P+ +P + P+ +PTS A +PT + P +P +
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAA 92
Query: 1694 YNPQSAKYSPSLAYSPS-SPRLSPAS-PYSPTSPNYSPTSSSYSPTSPSY----SPSSPT 1747
+P LA +P + S + +P + TS++ P+ SP
Sbjct: 93 SRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSPPPFA 152
Query: 1748 YSPS 1751
Y+ S
Sbjct: 153 YTRS 156
Score = 40.9 bits (95), Expect = 0.006
Identities = 28/154 (18%), Positives = 52/154 (33%), Gaps = 13/154 (8%)
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PAYSPTSPGYSPTSPSY 1680
A + T+ S + P +P + + PA +PTS +
Sbjct: 13 ACINLIIANLNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQ 72
Query: 1681 SPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPT-SPNYSPTSSSYSPTSP 1739
+PT P+ P A A P ++P +P + TS++ + +P
Sbjct: 73 APTPAASEKFDPAPAPHQA------ASRAPDPAVAPQLAAAPKPDAAEAFTSAAQAHEAP 126
Query: 1740 SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
+ + +S P + +SP Y+ S
Sbjct: 127 ADAGTSAASKKPDP----AAHTQHSPPPFAYTRS 156
Score = 40.5 bits (94), Expect = 0.009
Identities = 21/100 (21%), Positives = 35/100 (35%), Gaps = 1/100 (1%)
Query: 1489 AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1548
A S P +P+S +PT P +P P +P
Sbjct: 49 AASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPDPAVAPQLAAAP 108
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSP 1587
A + TS + + +P+ + TS S P +++ SP
Sbjct: 109 KPDAAEAFTSAAQAHEAPADAGTSAASKKPDPAAHTQHSP 148
Score = 36.2 bits (83), Expect = 0.18
Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 16/134 (11%)
Query: 1662 TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS 1721
TS A P +P + P +PTS +A P LA +P+ +
Sbjct: 33 TSAATQKPDPAPAPHQAASRAPDPAVAPTS------AASRKPDLAQAPTP------AASE 80
Query: 1722 PTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAP 1781
P +P ++ P+ +P A + + + AG S ++
Sbjct: 81 KFDPAPAPHQAASRAPDPAVAPQLAAAPKPDAAEA----FTSAAQAHEAPADAGTSAASK 136
Query: 1782 GYSPSSTSQYTPQT 1795
P++ +Q++P
Sbjct: 137 KPDPAAHTQHSPPP 150
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 59.3 bits (143), Expect = 2e-08
Identities = 69/320 (21%), Positives = 90/320 (28%), Gaps = 55/320 (17%)
Query: 1487 GMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSP--TSPGYSPTSPG----YSPTS-PT 1539
+ P +PG G S G P T G PG + P+ PT
Sbjct: 515 EASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPT 574
Query: 1540 YS--PSSP--GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS--PTSPSY--SP 1591
S P P P P P P P S PT P SP P P SP SP
Sbjct: 575 LSKKPEFPKDPKHPKDPE-EPKKPK-RPRSAQ-RPTRPK-SPKLPELLDIPKSPKRPESP 630
Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY------------- 1638
SP P P P+SP P P SP P SP P P +
Sbjct: 631 KSPK-RPPPPQ-RPSSPE-RPEGPK-IIKSPK-PPKSPK-PPFDPKFKEKFYDDYLDAAA 684
Query: 1639 ----SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS-PGYSPTSPSYSPTSPTYSPTSPS 1693
+ T+ + S + +P +P +P P P P P P +
Sbjct: 685 KSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEE-FPFEPIGDPDAEQ 743
Query: 1694 YNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
+ P +P + + + P P SP
Sbjct: 744 PDDIEFFTPPE----EERTFFHETPADTPLPDILAEEFKEEDIHAETGEPDEAMKRPDSP 799
Query: 1754 YNAGGGNPDYSPSSPQYSPS 1773
++ P PS
Sbjct: 800 -------SEHEDKPPGDHPS 812
Score = 50.8 bits (121), Expect = 6e-06
Identities = 52/253 (20%), Positives = 67/253 (26%), Gaps = 40/253 (15%)
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS 1618
P P + P +P S P P
Sbjct: 510 PPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKP 569
Query: 1619 PTSPAYS--PTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS--PTSPG 1672
P S P P P P P P P S PT P SP P P SP
Sbjct: 570 SKIPTLSKKPEFPKDPKHPKDPE-EPKKPK-RPRSAQ-RPTRPK-SPKLPELLDIPKSPK 625
Query: 1673 Y--SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY--- 1727
SP SP P P P+SP P+ K SP+ P SP P P +
Sbjct: 626 RPESPKSPK-RPPPPQ-RPSSPE-RPEGPK-------IIKSPK-PPKSPKPPFDPKFKEK 674
Query: 1728 --------------SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
+ T+ + S + +P +P+ P P ++
Sbjct: 675 FYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFE 734
Query: 1774 AGYSPSAPGYSPS 1786
P A
Sbjct: 735 PIGDPDAEQPDDI 747
Score = 48.9 bits (116), Expect = 2e-05
Identities = 49/233 (21%), Positives = 65/233 (27%), Gaps = 56/233 (24%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYS--PTSPGY--SPTSPGYSPTSPTYSPSSPG 1546
P P S SP P P SP SP SP P P PSSP
Sbjct: 593 EPKKPK--RPRSAQRPTRPK--SPKLPELLDIPKSPKRPESPKSP-KRPPPPQ-RPSSP- 645
Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSY-----------------SPTSPSYSPTSPSY 1589
P P SP P SP P P + + T+ + S
Sbjct: 646 ERPEGPK-IIKSPK-PPKSPK-PPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESI 702
Query: 1590 SPTSPSYSPTSPSYSPTS-PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS------ 1642
+ +P +P +P P P P P P + P
Sbjct: 703 LKETLPETPGTPFTTPRPLPPKLPRDEE-FPFEPIGDPDAEQPDDIEFFTPPEEERTFFH 761
Query: 1643 --PSYSP--------------TSPSYSPTSPSYSPTSPA-YSPTSPGYSPTSP 1678
P+ +P + + P P SP+ + PG P+ P
Sbjct: 762 ETPADTPLPDILAEEFKEEDIHAETGEPDEAMKRPDSPSEHEDKPPGDHPSLP 814
Score = 40.8 bits (95), Expect = 0.008
Identities = 37/180 (20%), Positives = 49/180 (27%), Gaps = 18/180 (10%)
Query: 1650 PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSP 1709
P P + P +P G S P K P+ + P
Sbjct: 510 PPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKP 569
Query: 1710 SS-PRLS--PASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPS-----------SPYN 1755
S P LS P P P P P P S PT S SP
Sbjct: 570 SKIPTLSKKPEFPKDPKHPK--DPEEPKKPKRPR-SAQRPTRPKSPKLPELLDIPKSPKR 626
Query: 1756 AGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSSR 1815
P PQ PS+ P P S +P+ D + + D +++
Sbjct: 627 PESPKSPKRPPPPQ-RPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAK 685
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and is
typically between 384 and 430 amino acids in length.
Length = 414
Score = 57.9 bits (140), Expect = 2e-08
Identities = 67/291 (23%), Positives = 91/291 (31%), Gaps = 46/291 (15%)
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTS-PGYSPT------SPGYSPTSPTYSPSSPGYSPTS 1551
S ++P + S G + P+S PG S + T + P
Sbjct: 48 SDAAPSGTDSLSGRPASRLNREPSSRPGSSHSEATIVRQAKEGERPATPPEARPDEGFVR 107
Query: 1552 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT--SPSYSPTSPSY------SPTSPSY 1603
P+ P+ P S S S S PS S T +SPT ++ P SP +
Sbjct: 108 PSL-PSHPRSRSASVSNSKDGDRPSDLPPSPSKTMDPRRWSPTKATWLESALNKPESPKH 166
Query: 1604 SPTSPAYS--------------------PTSPAYSPTSPAYSPTSPSYSPTSPSYS---- 1639
P P S P SPS S
Sbjct: 167 KPQPPQQPEWKKDLSRLRQSRASVDLGRTNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPD 226
Query: 1640 -PTSPSYSPTSPSYSPTSPSYSPTSPAYSPT-SPGYSPTSPSYSPTSPTYS--PTSPSYN 1695
P+S T P S T + +P P SP +P T SP +
Sbjct: 227 LPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAPPIDTTEEELKSPEAS 286
Query: 1696 PQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
P+ ++ + + SPS LSP+ P SP S P SP P SP
Sbjct: 287 PKESEEASARKRSPSL--LSPSPKAESPKPLASPGKSPRDPLSPRPKPQSP 335
Score = 52.2 bits (125), Expect = 2e-06
Identities = 73/312 (23%), Positives = 95/312 (30%), Gaps = 33/312 (10%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTS-PGYSPTSPT-YSPSSPGYSP 1549
S G S S S ++P + + G + P+S PG S + T + G P
Sbjct: 34 SGLSRGNSFLSNRNSDAAPSGTDSLSGRPASRLNREPSSRPGSSHSEATIVRQAKEGERP 93
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT--SPSYSPT- 1606
+P P PS P+ P S S S S PS S T +SPT
Sbjct: 94 ATP--PEARPDEGFVRPSL-PSHPRSRSASVSNSKDGDRPSDLPPSPSKTMDPRRWSPTK 150
Query: 1607 -----SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS------PTSPSYSPTSPSYSPT 1655
S P SP + P P S S + S
Sbjct: 151 ATWLESALNKPESPKHKPQPPQQPEWKKDLSRLRQSRASVDLGRTNSFKEVTPVGLMRTP 210
Query: 1656 SPSYSPTSPAYS-----PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPS 1710
P SP+ S P+S T P + T S P P P
Sbjct: 211 PPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAP-----KPRETLDPK 265
Query: 1711 SPRLSPASPYSPT---SPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSS 1767
SP +P + SP SP S + SPS + SP + +P SP
Sbjct: 266 SPEKAPPIDTTEEELKSPEASPKESEEASARKR-SPSLLSPSPKAESPKPLASPGKSPRD 324
Query: 1768 PQYSPSAGYSPS 1779
P SP
Sbjct: 325 PLSPRPKPQSPP 336
Score = 46.8 bits (111), Expect = 9e-05
Identities = 71/308 (23%), Positives = 90/308 (29%), Gaps = 54/308 (17%)
Query: 1462 SPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSS-PGYSPSSP--------GY 1512
P L N LS ++ P S PSS PG S S G
Sbjct: 32 LPSGLSRGNSFLSNRNSDAAPSGTDSLSGRPASRLNREPSSRPGSSHSEATIVRQAKEGE 91
Query: 1513 SPTSPGYSPTSPGYS----PTSPGYSPTSPTYSPSSPGYSPTSPAYSPT--SPSYSPTSP 1566
P +P + G+ P+ P S + S S P+ S T +SPT
Sbjct: 92 RPATPPEARPDEGFVRPSLPSHPRSRSASVSNSKDGDRPSDLPPSPSKTMDPRRWSPTKA 151
Query: 1567 SY------SPTSPSYSPTSPSYS--------------------PTSPSYSPTSPSYSPTS 1600
++ P SP + P P S
Sbjct: 152 TWLESALNKPESPKHKPQPPQQPEWKKDLSRLRQSRASVDLGRTNSFKEVTPVGLMRTPP 211
Query: 1601 PSYSPTSPAYS-----PTSPAYSPTSPAYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSP 1654
P SP+ S P+S T P S T S +P + P SP +P
Sbjct: 212 PGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAP 271
Query: 1655 TSPSYS--PTSPAYSP-TSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS 1711
+ SP SP S S S S SP+ SP K P S
Sbjct: 272 PIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESPKPLASPGK----SPRDPLS 327
Query: 1712 PRLSPASP 1719
PR P SP
Sbjct: 328 PRPKPQSP 335
Score = 44.8 bits (106), Expect = 3e-04
Identities = 59/249 (23%), Positives = 67/249 (26%), Gaps = 50/249 (20%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT------SPTYS--- 1541
P + P P PS P S S S P S T SPT +
Sbjct: 96 PPEARPDEGFVRPSL-PSHPRSRSASVSNSKDGDRPSDLPPSPSKTMDPRRWSPTKATWL 154
Query: 1542 ------PSSPGYSPTSPAYS--------------------PTSPSYSPTSPSYSPTSPSY 1575
P SP + P P S P
Sbjct: 155 ESALNKPESPKHKPQPPQQPEWKKDLSRLRQSRASVDLGRTNSFKEVTPVGLMRTPPPGS 214
Query: 1576 SPTSPSYS-----PTSPSYSPTSPSYSPTSPSYSPTSPAYSPT-SPAYSPTSPAYSPTSP 1629
SPS S P+S T P S T + +P P SP +P
Sbjct: 215 HSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAPPID 274
Query: 1630 SYS--PTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
+ SP SP S S S S SPS P P SP P SP
Sbjct: 275 TTEEELKSPEASPKESEEASARKRSPSLLSPS-----PKAESPKPLASPGKSPRDPLSPR 329
Query: 1687 YSPTSPSYN 1695
P SP N
Sbjct: 330 PKPQSPPVN 338
Score = 41.4 bits (97), Expect = 0.004
Identities = 50/271 (18%), Positives = 79/271 (29%), Gaps = 20/271 (7%)
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
S +S PS S+ S + +PS + + + + P+S S S A
Sbjct: 25 SKRWSAQLPSGLSRGNSFLSNRNSDA--APSGTDSLSGRPASRLNREPSSRPGSSHSEAT 82
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT- 1669
P PS P+ P S S S S P+ S T
Sbjct: 83 IVRQAKEGERPATPPEARPDEGFVRPSL-PSHPRSRSASVSNSKDGDRPSDLPPSPSKTM 141
Query: 1670 -SPGYSPTSPSY------SPTSPTYSPTSPSYNPQSAKYSPSLAYS--------PSSPRL 1714
+SPT ++ P SP + P P P+ K L S +S +
Sbjct: 142 DPRRWSPTKATWLESALNKPESPKHKPQ-PPQQPEWKKDLSRLRQSRASVDLGRTNSFKE 200
Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
T P S + S P S + + + S P
Sbjct: 201 VTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRE 260
Query: 1775 GYSPSAPGYSPSSTSQYTPQTNRDDSTTKDD 1805
P +P +P + + + S + +
Sbjct: 261 TLDPKSPEKAPPIDTTEEELKSPEASPKESE 291
Score = 32.1 bits (73), Expect = 3.3
Identities = 46/218 (21%), Positives = 70/218 (32%), Gaps = 41/218 (18%)
Query: 1628 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS-PSYSPTSPT 1686
S +S PS S+ S + +PS + + + P+S P S + T
Sbjct: 25 SKRWSAQLPSGLSRGNSFLSNRNSDA--APSGTDSLSGRPASRLNREPSSRPGSSHSEAT 82
Query: 1687 ---------YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSS---- 1733
T P P PSL P S S ++ P+ P S S
Sbjct: 83 IVRQAKEGERPATPPEARPDEGFVRPSLPSHPRSRSASVSNSKDGDRPSDLPPSPSKTMD 142
Query: 1734 ---YSPTSPSY------SPSSPTYSPSSP----YNAGGGNPDYS--------PSSPQYSP 1772
+SPT ++ P SP + P P + S +S +
Sbjct: 143 PRRWSPTKATWLESALNKPESPKHKPQPPQQPEWKKDLSRLRQSRASVDLGRTNSFKEVT 202
Query: 1773 SAGY----SPSAPGYSPSSTSQYTPQTNRDDSTTKDDK 1806
G P + SPS + ++RD TK +K
Sbjct: 203 PVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEK 240
>gnl|CDD|219094 pfam06583, Neogenin_C, Neogenin C-terminus. This family represents
the C-terminus of eukaryotic neogenin precursor proteins,
which contains several potential phosphorylation sites.
Neogenin is a member of the N-CAM family of cell adhesion
molecules (and therefore contains multiple copies of
pfam00047 and pfam00041) and is closely related to the
DCC tumour suppressor gene product - these proteins may
play an integral role in regulating differentiation
programmes and/or cell migration events within many adult
and embryonic tissues.
Length = 295
Score = 56.9 bits (137), Expect = 3e-08
Identities = 50/245 (20%), Positives = 70/245 (28%), Gaps = 26/245 (10%)
Query: 1445 TPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPG 1504
TP RS TP S P + + + Y G + SS
Sbjct: 33 TPIRSSQDITPVSSSAQS-----------EPQSGQRRNSYRGHESEDSMSSLAARRGMRP 81
Query: 1505 Y-------SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS---PTSPAY 1554
P P S P ++ +P Y P SP T
Sbjct: 82 KMMIPMDSQPPQPVVS-AHPIHTLDNPQYPGILP--SPRCGYLHHQFSLRPMPFSTLTVQ 138
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
S +P P P+ S + + +PS S + PT P S
Sbjct: 139 RLYQHGDRAESVESVRQTPE-PPYLPAAQSESSNAAEEAPSRSIPTAHVRPTHPLKSFAV 197
Query: 1615 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 1674
PA + P P +P PT P +S + S + SP P P++P
Sbjct: 198 PALPASMSTIEPKLP-STPLLTQQGPTLPKHSVKTASVGTLGRARSPLLPVTVPSAPDVL 256
Query: 1675 PTSPS 1679
T
Sbjct: 257 ETGGK 261
Score = 46.1 bits (109), Expect = 1e-04
Identities = 43/242 (17%), Positives = 64/242 (26%), Gaps = 12/242 (4%)
Query: 1506 SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 1565
SP +P S +S P S S G+ S +
Sbjct: 23 SPHPNPSGTDTPIRSSQDITPVSSSAQSEPQSGQRRNSYRGHESEDSMSSLAARRGMR-- 80
Query: 1566 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYS 1625
P P S P ++ +P Y PS + P
Sbjct: 81 -PKMMIPMDSQPPQPVVS-AHPIHTLDNPQYPGILPSPRCGYLHHQ------FSLRPMPF 132
Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
T S +P P P+ S + +P S + PT P
Sbjct: 133 STLTVQRLYQHGDRAESVESVRQTPE-PPYLPAAQSESSNAAEEAPSRSIPTAHVRPTHP 191
Query: 1686 TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPT-SPNYSPTSSSYSPTSPSYSPS 1744
S P+ + P L +P + P P + + + SP P PS
Sbjct: 192 LKSFAVPALPASMSTIEPKLPSTPLLTQQGPTLPKHSVKTASVGTLGRARSPLLPVTVPS 251
Query: 1745 SP 1746
+P
Sbjct: 252 AP 253
Score = 36.1 bits (83), Expect = 0.16
Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 25/194 (12%)
Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
P ++ +P Y PS P +S +S + + + S
Sbjct: 100 PIHTLDNPQYPGILPS-----PRCGYLHHQFSLRPMPFSTLTVQRLYQHGDRAESVESVR 154
Query: 1682 PT-SPTYSPTSPSYNPQSAKYSPSLAYS-----PSSPRLSPASPYSPTSPNYSPTSSSYS 1735
T P Y P + S + +A+ +PS + P+ P S A P P S + +
Sbjct: 155 QTPEPPYLPAAQSESSNAAEEAPSRSIPTAHVRPTHPLKSFAVPALPASMSTIEPKLPST 214
Query: 1736 PTSPSYSPSSPTYSPSSPY--NAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
P P+ P +S + G P + PSAP +
Sbjct: 215 PLLTQQGPTLPKHSVKTASVGTLGRARSPLLPVT---------VPSAPDVLETGGK---M 262
Query: 1794 QTNRDDSTTKDDKN 1807
+ D+S D+ +
Sbjct: 263 LEDTDESYETDELS 276
>gnl|CDD|221745 pfam12737, Mating_C, C-terminal domain of homeodomain 1. Mating in
fungi is controlled by the loci that determine the mating
type of an individual, and only individuals with
differing mating types can mate. Basidiomycete fungi have
evolved a unique mating system, termed tetrapolar or
bifactorial incompatibility, in which mating type is
determined by two unlinked loci; compatibility at both
loci is required for mating to occur. The multi-allelic
tetrapolar mating system is considered to be a novel
innovation that could have only evolved once, and is thus
unique to the mushroom fungi. This domain is C-terminal
to the homeodomain transcription factor region.
Length = 418
Score = 57.1 bits (138), Expect = 5e-08
Identities = 66/284 (23%), Positives = 91/284 (32%), Gaps = 29/284 (10%)
Query: 1530 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1589
SP SP + SP S + SP S SP+ PS P S S
Sbjct: 73 SPERSPALSSERLLSPSPSVLDLSPVLASPQTGKRRRSSSPSDDEDEAERPSKRPRSDSI 132
Query: 1590 SPTSPSYSPTSPSY-SPTS---PAYSPTSPAYSPTSPAYSPTSPSYSPTS------PSYS 1639
S +S P SP + S S A PT P +P+ + S S
Sbjct: 133 SSSSSPAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHTPTDTAPSGKRKRRLSDG 192
Query: 1640 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS--------PGYSPTSPSYSPTSPTYSPTS 1691
P +P P S + S P ++ T SP+ P S +
Sbjct: 193 FQLP--APKRPQTSSRPQTVSDPLPLHATTDWDTWFQATVSSSPSLLLTGDIPPPVSVFA 250
Query: 1692 PSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPS 1751
P S SL P P L P + P PT+ S S ++ + P+ + S
Sbjct: 251 P---DDSTPLDISLFNFPLIPLLPPEALDLPA-----PTAVSSSSSTFA-VPALTSSSVD 301
Query: 1752 SPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
S+ P + S PSS+S Y +T
Sbjct: 302 QSATPLDQGFSNFGSNMYSEPLNPTNDSLLYGLPSSSSLYANRT 345
Score = 57.1 bits (138), Expect = 5e-08
Identities = 65/329 (19%), Positives = 99/329 (30%), Gaps = 47/329 (14%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP----GYSPTSPGYSPTSPTYSPSSPG 1546
SP SP S SPS + SP + SP+ P+ P S
Sbjct: 73 SPERSPALSSERL-LSPSPSVLDLSPVLASPQTGKRRRSSSPSDDEDEAERPSKRPRSDS 131
Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS--------- 1597
S +S P + S S SP ++PT + S
Sbjct: 132 ISSSSSPAKPPEACLPSPAASTQDELSEASAAPLPTPSLSPPHTPTDTAPSGKRKRRLSD 191
Query: 1598 ------PTSPSYSPTSPAYSPTSPAYSPTSPA-YSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
P P S S P ++ T + + S SP+ P S +P
Sbjct: 192 GFQLPAPKRPQTSSRPQTVSDPLPLHATTDWDTWFQATVSSSPSLLLTGDIPPPVSVFAP 251
Query: 1651 SYS----------PTSPSYSPTSPAYS-PTSPGYSPTSPSYSPTSPTYSPTSPS------ 1693
S P P P + PT+ S ++ + + + S +
Sbjct: 252 DDSTPLDISLFNFPLIPLLPPEALDLPAPTAVSSSSSTFAVPALTSSSVDQSATPLDQGF 311
Query: 1694 YNPQSAKYSPSLAYSPSSPRL---SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSP 1750
N S YS L + S S +S Y+ + + S+S SP S + P+ SP
Sbjct: 312 SNFGSNMYSEPLNPTNDSLLYGLPSSSSLYANRTIFPAWASTSVSPLDFSTLFNQPSPSP 371
Query: 1751 SSPYNAGGGNPDYSPSSPQYSPSAGYSPS 1779
+ +P+ P S
Sbjct: 372 MAS------QSILAPAQPTSPSPVALPSS 394
Score = 47.1 bits (112), Expect = 7e-05
Identities = 71/335 (21%), Positives = 102/335 (30%), Gaps = 57/335 (17%)
Query: 1445 TPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGY------ 1498
+P RSP S L SP+ + ++ SP G S + S
Sbjct: 73 SPERSPAL---------SSERLLSPSPSVLDLSPVLASPQTGKRRRSSSPSDDEDEAERP 123
Query: 1499 ---SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYS 1555
S S SSP P + SP + S + PT SP ++PT A S
Sbjct: 124 SKRPRSDSISSSSSPAKPPEACLPSPAASTQDELSEASAAPLPT-PSLSPPHTPTDTAPS 182
Query: 1556 ---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--------PSYSPTSPSYS 1604
S P+ P P S + S P ++ T S SP+
Sbjct: 183 GKRKRRLSDGFQLPA--PKRPQTSSRPQTVSDPLPLHATTDWDTWFQATVSSSPSLLLTG 240
Query: 1605 PTSPAYSPTSPAYSPTSPAYS---PTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYS 1660
P S +P S P P P + PT+ S S ++ + + S
Sbjct: 241 DIPPPVSVFAPDDSTPLDISLFNFPLIPLLPPEALDLPAPTAVSSSSSTFAVPALTSSSV 300
Query: 1661 PTSP-AYSPT-----SPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYS------ 1708
S S YS + + P+S S + + S
Sbjct: 301 DQSATPLDQGFSNFGSNMYSEPLNPTNDSLLYGLPSSSSLYANRTIFPAWASTSVSPLDF 360
Query: 1709 ---PSSPRLSPAS------PYSPTSPNYSPTSSSY 1734
+ P SP + P PTSP+ SS
Sbjct: 361 STLFNQPSPSPMASQSILAPAQPTSPSPVALPSSE 395
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is a
positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting pathway
to dissociate the endosomal sorting complex required for
transport (ESCRT). Vta1 promotes correct assembly of Vps4
and stimulates its ATPase activity through its conserved
Vta1/SBP1/LIP5 region.
Length = 315
Score = 56.2 bits (136), Expect = 6e-08
Identities = 22/127 (17%), Positives = 37/127 (29%), Gaps = 4/127 (3%)
Query: 1539 TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1598
+P P + + + P S SP+ P S P+ P
Sbjct: 147 DPNPGPPLDEE-DEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPS 205
Query: 1599 TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
+ S P+S P+ + P P+ P P S + +P
Sbjct: 206 SPSDSSLPPA---PSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPP 262
Query: 1659 YSPTSPA 1665
+ +PA
Sbjct: 263 SASATPA 269
Score = 55.8 bits (135), Expect = 8e-08
Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 3/106 (2%)
Query: 1538 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
S PG + SP+ P S P+ P + S P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA---PSSFQSD 222
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
PS + P PA P P S + +P + +P
Sbjct: 223 TPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATP 268
Score = 55.5 bits (134), Expect = 1e-07
Identities = 17/112 (15%), Positives = 30/112 (26%), Gaps = 1/112 (0%)
Query: 1566 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS-PAYSPTSPAY 1624
+ + P S SP+ P S P+ P + S P+ +
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPP 225
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
+P+ P P T+ P++ A G +
Sbjct: 226 PSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLD 277
Score = 54.7 bits (132), Expect = 2e-07
Identities = 23/128 (17%), Positives = 36/128 (28%), Gaps = 17/128 (13%)
Query: 1636 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS-PTYSPTSPSY 1694
+ + P S SP+ P S P+ P + S P+ +
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDT-- 223
Query: 1695 NPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPY 1754
P SP +P P P P S + +P + ++P
Sbjct: 224 --------------PPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPA 269
Query: 1755 NAGGGNPD 1762
GG D
Sbjct: 270 PIGGITLD 277
Score = 54.3 bits (131), Expect = 3e-07
Identities = 26/107 (24%), Positives = 32/107 (29%), Gaps = 4/107 (3%)
Query: 1503 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYS 1562
S PG SP+ P S P+ P S S P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA---PSSFQSD 222
Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSP 1608
PS + P P+ P P S + PT PS S T
Sbjct: 223 TPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPA 269
Score = 53.9 bits (130), Expect = 3e-07
Identities = 18/112 (16%), Positives = 28/112 (25%), Gaps = 1/112 (0%)
Query: 1510 PGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS-PSYSPTSPSY 1568
+ PG SP+ P S PS P + S PS +
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPP 225
Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1620
+P+ P P T+ P++ A +
Sbjct: 226 PSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLD 277
Score = 53.2 bits (128), Expect = 5e-07
Identities = 21/115 (18%), Positives = 31/115 (26%), Gaps = 4/115 (3%)
Query: 1580 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS-PSYSPTSPSY 1638
+ + P S SP+ P S P+ P + S PS +
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPP 225
Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
+P+ P P T+ PT PS S T +
Sbjct: 226 PSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAK---PTPPSASATPAPIGGITLD 277
Score = 53.2 bits (128), Expect = 6e-07
Identities = 21/113 (18%), Positives = 32/113 (28%), Gaps = 5/113 (4%)
Query: 1524 PGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1583
+ PG + SPS P S P+ P + S P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA---PSSFQSD 222
Query: 1584 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
PS + P P+ P P + + P S + +P
Sbjct: 223 TPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAK--PTPPSASATPAPIGG 273
Score = 53.2 bits (128), Expect = 6e-07
Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 7/111 (6%)
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
+ S + + SP P+S P+ P SP PSSP S PA P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFP-----SPPEDPSSPSDSSLPPA--PSS 218
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
PS + P P+ P P S + +P + +PA
Sbjct: 219 FQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPA 269
Score = 52.8 bits (127), Expect = 8e-07
Identities = 25/112 (22%), Positives = 35/112 (31%), Gaps = 4/112 (3%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
+ ++ S PG SP+ P S P+ P + S P+
Sbjct: 161 ADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA---PS 217
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSP 1601
S PS + P P+ P P S + PT PS S T
Sbjct: 218 SFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPA 269
Score = 52.8 bits (127), Expect = 8e-07
Identities = 26/113 (23%), Positives = 38/113 (33%), Gaps = 5/113 (4%)
Query: 1573 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYS 1632
+ + P S SP+ P S P SP P+SP+ S PA P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFP-SPPEDPSSPSDSSLPPA--PSSFQSD 222
Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
PS + P P+ P P + + P S + +P
Sbjct: 223 TPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAK--PTPPSASATPAPIGG 273
Score = 52.0 bits (125), Expect = 1e-06
Identities = 28/139 (20%), Positives = 43/139 (30%), Gaps = 15/139 (10%)
Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPT 1730
+ P + SP+ P + PS PSSP S P P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA-PSSFQSDTP 224
Query: 1731 SSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
S + P P P P S+ + P+ P + ++ +
Sbjct: 225 PPSPESPTNPSPPPGPAAPPPPP-----VQQVPPLSTAK--------PTPP-SASATPAP 270
Query: 1791 YTPQTNRDDSTTKDDKNTK 1809
T DD+ K K+ K
Sbjct: 271 IGGITLDDDAIAKAQKHAK 289
Score = 51.6 bits (124), Expect = 2e-06
Identities = 21/111 (18%), Positives = 33/111 (29%), Gaps = 3/111 (2%)
Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS 1688
+ + P S SP+ P S P+ P + S P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA---PSSFQSD 222
Query: 1689 PTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
PS + P +P P + P S P S++ +P
Sbjct: 223 TPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGG 273
Score = 50.5 bits (121), Expect = 4e-06
Identities = 18/133 (13%), Positives = 35/133 (26%)
Query: 1453 GTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGY 1512
G + G ++ + ++ + SP+ P SP P +
Sbjct: 145 GEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDP 204
Query: 1513 SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTS 1572
S S P +P + +PS P P T+ P++
Sbjct: 205 SSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSA 264
Query: 1573 PSYSPTSPSYSPT 1585
+ +
Sbjct: 265 SATPAPIGGITLD 277
Score = 50.1 bits (120), Expect = 5e-06
Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 3/118 (2%)
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
+ + P + SP+ P S P+ P + S P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA---PSSFQSD 222
Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS 1718
P+ + P P+ P P S + + + L +
Sbjct: 223 TPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDDDA 280
Score = 49.3 bits (118), Expect = 9e-06
Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 7/118 (5%)
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1653
+ + P + SP+ P S P+ P + S P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPA---PSSFQSD 222
Query: 1654 PTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS-PSYNPQSAKYSPSLAYSPS 1710
PS + +P+ P P T+ P+ SA +P +
Sbjct: 223 TPPPSPESPT---NPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLD 277
Score = 47.8 bits (114), Expect = 3e-05
Identities = 27/118 (22%), Positives = 39/118 (33%), Gaps = 6/118 (5%)
Query: 1615 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 1674
+ P S SP+ P S P SP P+SPS S PA P+S
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFP-SPPEDPSSPSDSSLPPA--PSSFQSD 222
Query: 1675 PTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSS 1732
PS + +P+ P S+ + +P S + +P T
Sbjct: 223 TPPPSPESPT---NPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLD 277
Score = 45.4 bits (108), Expect = 2e-04
Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 6/118 (5%)
Query: 1475 PVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYS 1534
+D F A + S P P SP P + S S P +P
Sbjct: 166 TNSDNSFPGEDADPASASPSDP------PSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSF 219
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1592
+ +P+ P P T+ P++ + +
Sbjct: 220 QSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLD 277
Score = 37.4 bits (87), Expect = 0.064
Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Query: 1714 LSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY--- 1770
+ + P +S SP+ P S PS P + + P +P
Sbjct: 162 DVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQS 221
Query: 1771 --SPSAGYSPSAPGYSPSSTSQYTPQT 1795
P + SP+ P P + P
Sbjct: 222 DTPPPSPESPTNPSPPPGPAAPPPPPV 248
Score = 35.0 bits (81), Expect = 0.30
Identities = 16/102 (15%), Positives = 28/102 (27%), Gaps = 13/102 (12%)
Query: 1708 SPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSS----------PYNAG 1757
++ + + SP+ S PS P S + +
Sbjct: 163 VATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSD 222
Query: 1758 GGNPDYSPSSPQYSPSAGYSPSAP---GYSPSSTSQYTPQTN 1796
P + P +P P P ST++ TP +
Sbjct: 223 TPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSA 264
>gnl|CDD|235052 PRK02597, rpoC2, DNA-directed RNA polymerase subunit beta';
Provisional.
Length = 1331
Score = 57.3 bits (139), Expect = 8e-08
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
LV GE +G +AAQSIGEP TQ+T+ TFH GV V
Sbjct: 307 LVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEV 344
Score = 52.7 bits (127), Expect = 2e-06
Identities = 35/135 (25%), Positives = 50/135 (37%), Gaps = 25/135 (18%)
Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPS 1435
SF+ET +L +AA+ +SD+LRG+ EN+++G+L P GTG
Sbjct: 1184 SFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTG------------------FSG 1225
Query: 1436 YMEGLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSS 1495
+ E + P GY NLR D PY +
Sbjct: 1226 FEE-------ELSAEAGPHPDILAEDPAGYRRMQNLRPDYTVDMPARPYASSLDDPSDED 1278
Query: 1496 PGYSPSSPGYSPSSP 1510
+ S G PSS
Sbjct: 1279 LEATRSRHGIDPSSS 1293
Score = 51.1 bits (123), Expect = 5e-06
Identities = 23/53 (43%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 815 GLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--GTVR 865
GLT E+ + G R+GL+DTA++T+++GY+ RRLV +D++V+ + GT R
Sbjct: 166 GLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVREEDCGTTR 218
>gnl|CDD|214368 CHL00117, rpoC2, RNA polymerase beta'' subunit; Reviewed.
Length = 1364
Score = 57.3 bits (139), Expect = 9e-08
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 1065 SLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGV 1098
LV GE +G +A QSIGEP TQ+TL TFH GV
Sbjct: 310 DLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGV 343
Score = 50.7 bits (122), Expect = 8e-06
Identities = 25/58 (43%), Positives = 39/58 (67%), Gaps = 3/58 (5%)
Query: 811 SYLR-GLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMV-KYD-GTVR 865
S R GL+ E+ G R+G++DTAV+T++ GY+ RRLV+ ++ I+V + D GT R
Sbjct: 167 SNFREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIVVRETDCGTTR 224
Score = 44.9 bits (107), Expect = 4e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 1376 SFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
SF+ET +L AA+ D+L+G+ EN++LG L P GTG
Sbjct: 1278 SFQETTRVLAKAALRGRIDWLKGLKENVILGGLIPAGTG 1316
>gnl|CDD|144451 pfam00859, CTF_NFI, CTF/NF-I family transcription modulation region.
Length = 295
Score = 55.5 bits (133), Expect = 1e-07
Identities = 63/264 (23%), Positives = 94/264 (35%), Gaps = 20/264 (7%)
Query: 1449 SPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVG---GMAFSPTSSPGY-SPSSPG 1504
+ +S + Y+D ++PG +L + + ++ V M SP Y SPSSP
Sbjct: 34 ADLSSSSYYD--LNPGAGLRRSLPSTSSSSSKRPKTVSMEEEMDTSPGGEDFYTSPSSP- 90
Query: 1505 YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPT 1564
S SS + G + P +S SP S S + T + +
Sbjct: 91 -SSSSANWHEVEGGM-SSPTMKKPDKSLFSSPSPQDS-SPRLSAFTQHHRPVITGHSGIS 147
Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSPTS-----PSYSPTSPSYSPTSPAYSPTSPAYSP 1619
+ + SP + PTSP SY P + P P P P+S
Sbjct: 148 ASPHPTPSPLHFPTSPILPQQPSSYFPHTAIRYPPHLHPQDPLKEFVQLVCDPSSQQAGQ 207
Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSP-SYSPTSPAYSPTSPGYSPT 1676
+ + P++ +P +P P P T P + S A SPTSP YS
Sbjct: 208 PNGSGQGKVPNHFLPTPMLAPPPPPPMARPVPLPMPDTKPPTTSTEGGATSPTSPTYSTP 267
Query: 1677 SPSYSPTSPTYSPTSPS--YNPQS 1698
S S + P P+ QS
Sbjct: 268 STSPANRFVGLGPRDPAFVQQQQS 291
Score = 55.5 bits (133), Expect = 1e-07
Identities = 60/233 (25%), Positives = 81/233 (34%), Gaps = 12/233 (5%)
Query: 1523 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY--SPTSPSYSPTS- 1579
S Y +PG S SS SP + SP+SPS S +
Sbjct: 38 SSSYYDLNPGAGLRRSLPSTSSSSSKRPKTVSMEEEMDTSPGGEDFYTSPSSPSSSSANW 97
Query: 1580 PSYSPTSPSYSPTSPSYSP-TSPSYSPTSPAYSPTSPAYSPTSPAYS-PTSPSYSPTSPS 1637
S + P S +SPS +SP S + + P +S ++ + SP
Sbjct: 98 HEVEGGMSSPTMKKPDKSLFSSPSPQDSSPRLSAFTQHHRPVITGHSGISASPHPTPSPL 157
Query: 1638 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN-- 1695
+ PTSP SY P + P P P P P+S + S
Sbjct: 158 HFPTSPILPQQPSSYFPHTAIRYP--PHLHPQDPLKEFVQLVCDPSSQQAGQPNGSGQGK 215
Query: 1696 -PQSAKYSPSLAYSPSSPRLSPASPYSPTS--PNYSPTSSSYSPTSPSYSPSS 1745
P +P LA P P P P + P S + SPTSP+YS S
Sbjct: 216 VPNHFLPTPMLAPPPPPPMARPVPLPMPDTKPPTTSTEGGATSPTSPTYSTPS 268
Score = 53.9 bits (129), Expect = 3e-07
Identities = 62/256 (24%), Positives = 96/256 (37%), Gaps = 30/256 (11%)
Query: 1558 SPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS------YSPTS 1607
+P + T P++S +S Y + S + +S S P + S SP
Sbjct: 21 TPIAAGTGPNFSLADLSSSSYYDLNPGAGLRRSLPSTSSSSSKRPKTVSMEEEMDTSPGG 80
Query: 1608 PAYSPTSPAYSPTSPAYSPTS-PSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPA 1665
+ SP+SP+ S + S + P S +SPS +SP S +
Sbjct: 81 EDFYT-----SPSSPSSSSANWHEVEGGMSSPTMKKPDKSLFSSPSPQDSSPRLSAFTQH 135
Query: 1666 YSPTSPGYS-PTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP----- 1719
+ P G+S ++ + SP + PTSP Q + Y P A P L P P
Sbjct: 136 HRPVITGHSGISASPHPTPSPLHFPTSPILPQQPSSYFPHTAIR-YPPHLHPQDPLKEFV 194
Query: 1720 ---YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS--- 1773
P+S + S P++ +P +P P P P + + S
Sbjct: 195 QLVCDPSSQQAGQPNGSGQGKVPNHFLPTPMLAPPPPPPMARPVPLPMPDTKPPTTSTEG 254
Query: 1774 AGYSPSAPGYSPSSTS 1789
SP++P YS STS
Sbjct: 255 GATSPTSPTYSTPSTS 270
Score = 33.5 bits (76), Expect = 0.94
Identities = 33/208 (15%), Positives = 71/208 (34%), Gaps = 10/208 (4%)
Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
TS +S T +P + T P++S +S Y + S + +S S P
Sbjct: 6 TSGVFSVTELVRVSRTPIAAGTGPNFSLADLSSSSYYDLNPGAGLRRSLPSTSSSSSKRP 65
Query: 1662 TSPA------YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLS 1715
+ + SP + + S S +S + + + K +S SP+ S
Sbjct: 66 KTVSMEEEMDTSPGGEDFYTSPSSPSSSSANWHEVEGGMSSPTMKKPDKSLFSSPSPQDS 125
Query: 1716 PASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAG 1775
+ T + + ++ + SP + P+SP + + ++ +Y P
Sbjct: 126 SPRLSAFTQHHRPVITGHSGISASPHPTPSPLHFPTSPILPQQPSSYFPHTAIRYPPHLH 185
Query: 1776 YSPSAPGYSPSSTSQYTPQTNRDDSTTK 1803
+ + Q + + + +
Sbjct: 186 PQDPLKEFVQLVCDPSSQQAGQPNGSGQ 213
>gnl|CDD|218566 pfam05349, GATA-N, GATA-type transcription activator, N-terminal.
GATA transcription factors mediate cell differentiation
in a diverse range of tissues. Mutation are often
associated with certain congenital human disorders. The
six classical vertebrate GATA proteins, GATA-1 to GATA-6,
are highly homologous and have two tandem zinc fingers.
The classical GATA transcription factors function
transcription activators. In lower metazoans GATA
proteins carry a single canonical zinc finger. This
family represents the N-terminal domain of the family of
GATA transcription activators.
Length = 177
Score = 51.7 bits (124), Expect = 3e-07
Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 20/146 (13%)
Query: 1632 SPTSPSYSPTSPSY---SPTSPSYSPTS--PSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
+ +Y S + + +SP Y PT+ PS P+ P + + P
Sbjct: 10 NHGQAAYDHDSGGFLHSAASSPVYVPTTRVPSMLPSLPYLQGCEASQQAHALAAHPGWSQ 69
Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPT--------------SPNYSPTSS 1732
+ S ++NP S +YS S P + + P
Sbjct: 70 AAAESSAFNPGSPHPPVGFSYSHSPPMSNGGGRDAGAYQGPLLLSGGREQYGAALRPLGG 129
Query: 1733 SYSPTSPSY-SPSSPTYSPSSPYNAG 1757
SYS P+Y SP + P+++
Sbjct: 130 SYSSPYPAYMSPELAPSWTAGPFDSS 155
Score = 48.3 bits (115), Expect = 5e-06
Identities = 35/143 (24%), Positives = 50/143 (34%), Gaps = 13/143 (9%)
Query: 1548 SPTSPAYSPTSPSY---SPTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
+ AY S + + +SP Y PT+ PS P+ P S + + P
Sbjct: 10 NHGQAAYDHDSGGFLHSAASSPVYVPTTRVPSMLPSLPYLQGCEASQQAHALAAHPGWSQ 69
Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYS----PTS 1656
+ S A++P SP + P +YS + P + S Y P
Sbjct: 70 AAAESSAFNPGSP-HPPVGFSYSHSPPMSNGGGRDAGAYQGPLLLSGGREQYGAALRPLG 128
Query: 1657 PSYSPTSPAY-SPTSPGYSPTSP 1678
SYS PAY SP P
Sbjct: 129 GSYSSPYPAYMSPELAPSWTAGP 151
Score = 45.2 bits (107), Expect = 7e-05
Identities = 32/146 (21%), Positives = 48/146 (32%), Gaps = 12/146 (8%)
Query: 1513 SPTSPGYSPTSPGY---SPTSPGYSPTS--PTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
+ Y S G+ + +SP Y PT+ P+ PS P + + + P
Sbjct: 10 NHGQAAYDHDSGGFLHSAASSPVYVPTTRVPSMLPSLPYLQGCEASQQAHALAAHPGWSQ 69
Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP--TSPAYSPTSPAYS 1625
+ S +++P SP P S S ++ P S A
Sbjct: 70 AAAESSAFNPG----SPHPPVGFSYSHSPPMSNGGGRDAGAYQGPLLLSGGREQYGAALR 125
Query: 1626 PTSPSYSPTSPSY-SPTSPSYSPTSP 1650
P SYS P+Y SP P
Sbjct: 126 PLGGSYSSPYPAYMSPELAPSWTAGP 151
Score = 44.0 bits (104), Expect = 1e-04
Identities = 35/150 (23%), Positives = 50/150 (33%), Gaps = 26/150 (17%)
Query: 1660 SPTSPAYSPTSPGY---SPTSPSYSPTS--PTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
+ AY S G+ + +SP Y PT+ P+ P+ P Y S + L
Sbjct: 10 NHGQAAYDHDSGGFLHSAASSPVYVPTTRVPSMLPSLP--------YLQGCEASQQAHAL 61
Query: 1715 SPASPYSPTSPNYSP--TSSSYSPTSPSYSPSSPTYSPS--------SPYNAGGGNPDYS 1764
+ +S + S S + P SYS S P + P GG Y
Sbjct: 62 AAHPGWSQAAAESSAFNPGSPHPPVGFSYSHSPPMSNGGGRDAGAYQGPLLLSGGREQY- 120
Query: 1765 PSSPQYSPSAGYSPSAPGY-SPSSTSQYTP 1793
+ YS P Y SP +T
Sbjct: 121 -GAALRPLGGSYSSPYPAYMSPELAPSWTA 149
Score = 35.9 bits (83), Expect = 0.081
Identities = 29/159 (18%), Positives = 41/159 (25%), Gaps = 24/159 (15%)
Query: 1446 PARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGY 1505
A SG H SP Y V + + + + +
Sbjct: 14 AAYDHDSGGFLHSAASSPVY----------VPTTRVPSMLPSLPYLQGCEASQQAHALAA 63
Query: 1506 SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS--PAYSPTSPSYSP 1563
P + S ++P SP + P +YS S P + S
Sbjct: 64 HPGWSQAAAESSAFNPGSP--------HPPVGFSYSHSPPMSNGGGRDAGAYQGPLLLSG 115
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSP 1601
Y P SYS P+Y SP P
Sbjct: 116 GREQYGAAL---RPLGGSYSSPYPAYMSPELAPSWTAGP 151
>gnl|CDD|132724 cd02737, RNAP_IV_NRPD1_C, Largest subunit (NRPD1) of Higher plant RNA
polymerase IV, C-terminal domain. Higher plants have
five multi-subunit nuclear RNA polymerases: RNAP I, RNAP
II and RNAP III, which are essential for viability; plus
the two isoforms of the non-essential polymerase RNAP IV
(IVa and IVb), which specialize in small RNA-mediated
gene silencing pathways. RNAP IVa and/or RNAP IVb might
be involved in RNA-directed DNA methylation of endogenous
repetitive elements, silencing of transgenes, regulation
of flowering-time genes, inducible regulation of adjacent
gene pairs, and spreading of mobile silencing signals.
NRPD1a is the largest subunit of RNAP IVa, whereas NRPD1b
is the largest subunit of RNAP IVb. The full subunit
compositions of RNAP IVa and RNAP IVb are not known, nor
are their templates or enzymatic products. However, it
has been shown that RNAP IVa and, to a lesser extent,
RNAP IVb are crucial for several RNA-mediated gene
silencing phenomena.
Length = 381
Score = 54.0 bits (130), Expect = 4e-07
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 7/132 (5%)
Query: 1289 LAVMCHEDVDARRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFDGSYVNYRHLAILCD 1348
+ VM + +D R+ + +I VLGI+A + L +S G V HL ++ D
Sbjct: 246 IPVM--DLIDWERSMPYSIQQIKSVLGIDAAFEQFVQRLESAVSMTGKSVLREHLLLVAD 303
Query: 1349 TMTYRGHLMAITRHGINR-----NDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENI 1403
+MTY G + + G + P F + L AA SD L GV +
Sbjct: 304 SMTYSGEFVGLNAKGYKAQRRSLKISAPFTEACFSSPIKCFLKAAKKGASDSLSGVLDAC 363
Query: 1404 MLGQLAPIGTGD 1415
G+ AP+GTG
Sbjct: 364 AWGKEAPVGTGS 375
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 54.3 bits (130), Expect = 6e-07
Identities = 65/289 (22%), Positives = 103/289 (35%), Gaps = 35/289 (12%)
Query: 1510 PGYSPTSPGYSPTSPGYSPTS--PGYSPTSPTYSPSSPGYSPTS-PAYSPTSPSYSPTSP 1566
P + +PG P P SPT+ + S+P Y+ T P P+ PT+
Sbjct: 553 PASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQLASSAPSYAQTPWPVPHPSQTPEPPTTQ 612
Query: 1567 SYSP--TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1624
S+ P ++P P P P P +P P P T
Sbjct: 613 SHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFP--TPHQP------PQVEITPYKP 664
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
+ T + P P SPT + ++P + P +P +P P +P + P +
Sbjct: 665 TWTQIGHIPYQP--SPTGANTM-LPIQWAPGTMQPPPRAP--TPMRPPAAPPGRAQRPAA 719
Query: 1685 PTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPS 1744
T P+ P A+ A +P R A+P P +P + P+ +P
Sbjct: 720 ATGRARPPAAAPGRARPP---AAAPGRARPPAAAPGRARPPAAAPGRAR----PPAAAPG 772
Query: 1745 SPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
+PT P P +P +PQ P +P P + ++ Q P
Sbjct: 773 APTPQP----------PPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMP 811
Score = 51.6 bits (123), Expect = 4e-06
Identities = 77/389 (19%), Positives = 122/389 (31%), Gaps = 45/389 (11%)
Query: 1445 TPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPG 1504
T + P + P M P LR+ P+T F+ V +P P +
Sbjct: 611 TQSHIPETSAPRQWPMPLRPIPMRP-LRMQPIT---FNVLVFP---TPHQPPQVEITPYK 663
Query: 1505 YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPT 1564
+ + G+ P P SPT ++P + P +P P P +P + P
Sbjct: 664 PTWTQIGHIPYQP--SPTGANTM-LPIQWAPGTMQPPPRAPT--PMRPPAAPPGRAQRPA 718
Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1624
+ + P+ +P +P + P+ +P +P + PA +P +P
Sbjct: 719 AATGRARPPAAAPGRARPPAAAPGRAR-PPAAAPGRARPPAAAPGRAR-PPAAAPGAPT- 775
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
P P +P +P P P PTS P + P+
Sbjct: 776 -PQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAP--------GQQGPTKQILR 826
Query: 1685 PTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSP---TSPNYSPTSS--------- 1732
+ P K + + + P SP S S +P + P
Sbjct: 827 QLLTGGVKRGRPSLKKPAALERQAAAGPTPSPGSGTSDKIVQAPVFYPPVLQPIQVMRQL 886
Query: 1733 -SYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAP--GYSPSST- 1788
S + S +PT G +P P S + A P G S S +
Sbjct: 887 GSVRAAAASTVTQAPTEYTGERRGVGPMHPTDIPPSKRAKTDAYVESQPPHGGQSHSFSV 946
Query: 1789 -----SQYTPQTNRDDSTTKDDKNTKGDK 1812
SQ QT TTK ++ G
Sbjct: 947 IWENVSQGQQQTLECGGTTKQERAMLGTG 975
>gnl|CDD|233841 TIGR02388, rpoC2_cyan, DNA-directed RNA polymerase, beta'' subunit.
The family consists of the product of the rpoC2 gene, a
subunit of DNA-directed RNA polymerase of cyanobacteria
and chloroplasts. RpoC2 corresponds largely to the
C-terminal region of the RpoC (the beta' subunit) of
other bacteria. Members of this family are designated
beta'' in chloroplasts/plastids, and beta' (confusingly)
in Cyanobacteria, where RpoC1 is called beta' in
chloroplasts/plastids and gamma in Cyanobacteria. We
prefer to name this family beta'', after its organellar
members, to emphasize that this RpoC1 and RpoC2 together
replace RpoC in other bacteria [Transcription,
DNA-dependent RNA polymerase].
Length = 1227
Score = 54.1 bits (130), Expect = 7e-07
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 30/123 (24%)
Query: 749 NNLKAMVTAGSKGSFINISQMTACVGQQ----NVEGKRIPFGFVDRTLPHFTKDDYGPES 804
N++ M +G++G N+SQ+ VG + N +G+ I LP
Sbjct: 119 NSVYMMAFSGARG---NMSQVRQLVGMRGLMANPQGEII-------DLP----------- 157
Query: 805 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYD--G 862
++ ++ GLT E+ + G R+GL+DTA++T+++GY+ RRLV +D++V+ + G
Sbjct: 158 ---IKTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVREEDCG 214
Query: 863 TVR 865
T R
Sbjct: 215 TER 217
Score = 52.9 bits (127), Expect = 2e-06
Identities = 22/38 (57%), Positives = 26/38 (68%)
Query: 1066 LVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNV 1103
LV GE +G +AAQSIGEP TQ+T+ TFH GV V
Sbjct: 305 LVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEV 342
Score = 51.8 bits (124), Expect = 3e-06
Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 1356 LMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAESDYLRGVTENIMLGQLAPIGTG 1414
L+ IT+ +N + + SF+ET +L +AA+ +SD+LRG+ EN+++G+L P GTG
Sbjct: 1165 LLGITKASLNTDSF--ISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTG 1221
>gnl|CDD|217495 pfam03326, Herpes_TAF50, Herpesvirus transcription activation factor
(transactivator). This family includes EBV BRLF1 and
similar ORF 50 proteins from other herpesviruses.
Length = 500
Score = 52.5 bits (126), Expect = 2e-06
Identities = 53/250 (21%), Positives = 79/250 (31%), Gaps = 25/250 (10%)
Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPAYSPTSPAYSPTSP 1622
SP S + T P S SPS + S S+S PA + SP ++
Sbjct: 204 ETRASPLSQFHGFTPHPSLPQPQSPLKPSPSSARPQQSESFSDVWPASTQ-SPREETSAE 262
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
+P SPS S P++ + S P S Y P S P+
Sbjct: 263 PLAPASPS------SRRPSTAQEEQIACSSPQAEPEQGVQS--YVPQSSDSRPSCFPAPS 314
Query: 1683 TS-PTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPT-SSSYSPTSP- 1739
T+ PT+ P P+ N ++ + +P + S +P S S SP
Sbjct: 315 TTQPTFLP--PNTNKKAKRDRRPQMVTPKQEGGAAVSQNHDGGTVRAPRGRPSGSGQSPP 372
Query: 1740 --SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPG-------YSPSSTSQ 1790
S SS +PS + + Q ++ P PG
Sbjct: 373 SNSPLLSSLADTPSGAAHQPASLLPPAVVQQQLEDASDKQPPTPGSSLVPQPDEQELGPS 432
Query: 1791 YTPQTNRDDS 1800
+RD
Sbjct: 433 VMALLDRDQG 442
Score = 40.9 bits (96), Expect = 0.007
Identities = 47/261 (18%), Positives = 73/261 (27%), Gaps = 34/261 (13%)
Query: 1455 PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 1514
D +S L +P L + S + G P SP P S + P S
Sbjct: 186 AASDADLSE-LLQNPEEILE-TRASPLSQFHGFTPHPSLPQP-QSPLKPSPSSARPQQSE 242
Query: 1515 TS----PGYSP-----TSPGY----SPTSPGYSPTSPTYSPSSPGYSPTSP---AYSPTS 1558
+ P + TS SP+S S S + +Y P S
Sbjct: 243 SFSDVWPASTQSPREETSAEPLAPASPSSRRPSTAQEEQIACSSPQAEPEQGVQSYVPQS 302
Query: 1559 PSYSP-----TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
P S + P + +P + S ++ +
Sbjct: 303 SDSRPSCFPAPSTTQPTFLPPNTNKKAKRDRRPQMVTPKQEGGAAVSQNHDGGTVRAPRG 362
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1673
P+ S SP S S +S + +P+ ++ P S + P +PG
Sbjct: 363 RPSGSGQSPP----SNSPLLSSLADTPSGAAHQPASLLPPAVVQQQLEDASDKQPPTPGS 418
Query: 1674 SPTSPSYSPTSPTYSPTSPSY 1694
S P PS
Sbjct: 419 SL------VPQPDEQELGPSV 433
Score = 33.2 bits (76), Expect = 1.4
Identities = 21/122 (17%), Positives = 36/122 (29%), Gaps = 1/122 (0%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
T+ P + P + S G + +P PS G SP
Sbjct: 313 PSTTQPTFLPPNTNKKAKRDRRPQMVTPKQEGGAAVSQNHDGGTVRAPRGRPSGSGQSPP 372
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPA 1609
S + +S + +P+ ++ P S + P +P S P P+
Sbjct: 373 SNSPLLSSLADTPSGAAHQPASLLPPAVVQQQLEDASDKQPPTPGSSLVPQPDEQELGPS 432
Query: 1610 YS 1611
Sbjct: 433 VM 434
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau;
Validated.
Length = 830
Score = 51.4 bits (123), Expect = 4e-06
Identities = 41/295 (13%), Positives = 94/295 (31%), Gaps = 27/295 (9%)
Query: 1488 MAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
+AF P + G +P G G P + + G S + T G
Sbjct: 356 LAFEPAVTGGGAPGG-GVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGA------AGA 408
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
+ A + + + + P+ P + + + + + + +
Sbjct: 409 ALAPKAAAAAAATRAEAPPAAPA------PPATADRGDDAADGDAPVPAKANARASADSR 462
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
P A +P S + P ++ P + +P++ + + + +P + +
Sbjct: 463 CDERDAQPPADS-GSASAPASDA--PPDAAFEPAPRAAAPSAATPAAVPDARAPAAASRE 519
Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY----SPSLAYSPSSPRLSPASPYSPT 1723
+P +P P +P + + +A + + S + A+
Sbjct: 520 DAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAA 579
Query: 1724 SPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSP 1778
+P +P P +P + +P + G P+ + + Q + S G P
Sbjct: 580 APAAAPK-----PAAP--RVAVQVPTPRARAATGDAPPNGAARAEQAAESRGAPP 627
Score = 43.7 bits (103), Expect = 0.001
Identities = 43/326 (13%), Positives = 98/326 (30%), Gaps = 31/326 (9%)
Query: 1481 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP-GYSPTSPGYSPTSPT 1539
F P V G P G P+ + + G S + G +
Sbjct: 358 FEPAVTGGGAPGGGVP---ARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKA 414
Query: 1540 YSPSSPGYSPTSPAYSPTSPSY-SPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
+ ++ + PA + + P+ + S P+ S
Sbjct: 415 AAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADS 474
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
++ + + +P + PA + + T + + + + +P +
Sbjct: 475 GSASAPASDAPPDAAFEPA-PRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEAR 533
Query: 1658 SYSPTSPAYSPTSPGYS-------------PTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
+P + A + + G + + + +P+ P+ A +
Sbjct: 534 PPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVA 593
Query: 1705 LAY-SPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP-TYSPSSPYNAGGGNPD 1762
+ +P + + +P + + + ++ P + P Y P S GG D
Sbjct: 594 VQVPTPRARAATGDAPPNGAAR--AEQAAESRGAPPPWEDIPPDDYVPLSADEGFGGPDD 651
Query: 1763 -YSP---SSP---QYSPSAGYSPSAP 1781
+ P S P + +P +P+ P
Sbjct: 652 GFVPVFDSGPDDVRVAPKPADAPAPP 677
Score = 43.7 bits (103), Expect = 0.001
Identities = 23/196 (11%), Positives = 53/196 (27%), Gaps = 6/196 (3%)
Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYS 1646
++ P P A + + S + T + + + +
Sbjct: 357 AFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAA 416
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA 1706
+ + + P+ P + + + P + + S P
Sbjct: 417 AAAATRAEAPPAAPA--PPATADRGDDAADGDAPVP-AKANARASADSRCDERDAQPPAD 473
Query: 1707 YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPS 1766
+S S A P + P + S + + +P + A P +P
Sbjct: 474 SGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP--APE 531
Query: 1767 SPQYSPSAGYSPSAPG 1782
+ +P+A + G
Sbjct: 532 ARPPTPAAAAPAARAG 547
>gnl|CDD|217453 pfam03251, Tymo_45kd_70kd, Tymovirus 45/70Kd protein. Tymoviruses
are single stranded RNA viruses. This family includes a
protein of unknown function that has been named based on
its molecular weight. Tymoviruses such as the ononis
yellow mosaic tymovirus encode only three proteins. Of
these two are overlapping this protein overlaps a larger
ORF that is thought to be the polymerase.
Length = 458
Score = 50.9 bits (122), Expect = 5e-06
Identities = 49/233 (21%), Positives = 67/233 (28%), Gaps = 46/233 (19%)
Query: 1505 YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS----PS 1560
+ SP SPG SP + T+ P S SP + P
Sbjct: 226 HPLPSPQPVRHSPGILGPSPLHPHTTRPSPPRPAFSRSPSSPLSPLPRPSTRRGLLPNPR 285
Query: 1561 YSPTSPSYSPTSPSYSPTSP-----------SYSPTSPSYSPT----------------- 1592
S + P S +P P S P SP+ P
Sbjct: 286 LPRASRGHLPPPTSSAPPRPNGGLRRPLHLHSSRPNSPNLRPRRIRKNSLQQTRARLGHS 345
Query: 1593 ----------SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYS-PTSPSYSPTSPSYSPT 1641
S P + P P A T+ A SPS P +
Sbjct: 346 KSLGQSPNLRSSQLPPPTKRRLRLLPVPPPKVQALPLTALAPLVRHSPSIPLPHPPSALP 405
Query: 1642 SPSYSPTSPSYSPTS---PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
S + +S + P +SP+ SP+ P P +P + PT SP S
Sbjct: 406 SHVGASSSKHHRLPPSVLPGPRLSSPSPSPSLPTRRPGTPPPPASPPTPSPPS 458
Score = 49.3 bits (118), Expect = 1e-05
Identities = 71/322 (22%), Positives = 94/322 (29%), Gaps = 29/322 (9%)
Query: 1487 GMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG 1546
G SP + SS TSPG S P P P +
Sbjct: 4 GFPTSPRRPILHHSQRFLSESSSRLGCRTSPGLSSNLPLDHPKGTSSFPQLLRHPSLRLR 63
Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
P P + P P S + S +P P +P
Sbjct: 64 LHPPPPPCPQNPRDFPSLQPLELPLHHSLL--RHVHETLKVSQAPGEQPKLPRAPQLPSH 121
Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1666
+ +S + S PS S + P + PS P SP +
Sbjct: 122 PRRHRSLPHHLHHSSKHRNRLHARRSDVLPSLSNSRPVHELPKPSTPVLQPRRSPRKQLH 181
Query: 1667 SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA----YSPSSP---RLSPA-- 1717
P S S + S + SP Q A P LA + SP R SP
Sbjct: 182 RPLSLPRSLHLHNSRQHSSLHPRRSPRRQLQPAPRRPLLAENQLHPLPSPQPVRHSPGIL 241
Query: 1718 --SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAG 1775
SP P + SP ++S SPSSP P G P+ P P
Sbjct: 242 GPSPLHPHTTRPSPPRPAFSR-----SPSSPLSPLPRPSTRRGLLPN--PRLP------- 287
Query: 1776 YSPSAPGYSPSSTSQYTPQTNR 1797
++ G+ P TS P+ N
Sbjct: 288 --RASRGHLPPPTSSAPPRPNG 307
Score = 49.3 bits (118), Expect = 1e-05
Identities = 59/243 (24%), Positives = 78/243 (32%), Gaps = 33/243 (13%)
Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPT---SPS 1588
+ SP SPG SP + T+ P S SP+SP PS +P
Sbjct: 226 HPLPSPQPVRHSPGILGPSPLHPHTTRPSPPRPAFSRSPSSPLSPLPRPSTRRGLLPNPR 285
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT-------------- 1634
S + P S +P P P + +S P SP+ P
Sbjct: 286 LPRASRGHLPPPTSSAPPRPNGGLRRPLHLHSS---RPNSPNLRPRRIRKNSLQQTRARL 342
Query: 1635 --SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS-PTS 1691
S S + S P + P P P SP+ P
Sbjct: 343 GHSKSLGQSPNLRSSQLPPPTKRRLRLLPVPPPKVQALP--LTALAPLVRHSPSIPLPHP 400
Query: 1692 PSYNPQSAKYSPSLAYSPSSPRLSPA--SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYS 1749
PS P S A S RL P+ +SP+ SP+ + P +P S PT S
Sbjct: 401 PSALP-----SHVGASSSKHHRLPPSVLPGPRLSSPSPSPSLPTRRPGTPPPPASPPTPS 455
Query: 1750 PSS 1752
P S
Sbjct: 456 PPS 458
Score = 46.2 bits (110), Expect = 1e-04
Identities = 59/299 (19%), Positives = 76/299 (25%), Gaps = 31/299 (10%)
Query: 1521 PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1580
P+ P P++P P S + S +S P SP
Sbjct: 151 PSLSNSRPVHELPKPSTPVLQPRRSPRKQLHRPLSLPRSLHLHNSRQHSSLHPRRSP-RR 209
Query: 1581 SYSPTSPSYSPTSPSYSPTSPSYSPT-SPAYSPTSPAYSPTSPAYSPTSP-SYSPTSPSY 1638
P P SP SP + T+ P S SP+SP
Sbjct: 210 QLQPAPRRPLLAENQLHPLPSPQPVRHSPGILGPSPLHPHTTRPSPPRPAFSRSPSSPLS 269
Query: 1639 SPTSPSYSPT---SPSYSPTSPSYSPTSPAYSPTSPGYSPTSP----SYSPTSPTYSPTS 1691
PS +P S + P + +P P P S P SP P
Sbjct: 270 PLPRPSTRRGLLPNPRLPRASRGHLPPPTSSAPPRPNGGLRRPLHLHSSRPNSPNLRPRR 329
Query: 1692 PSYNP---------------QSAKYSPSLAYSPSSPRLSPASPYSP--TSPNYSPTSSSY 1734
N QS S P+ RL P P +
Sbjct: 330 IRKNSLQQTRARLGHSKSLGQSPNLRSSQLPPPTKRRL-RLLPVPPPKVQALPLTALAPL 388
Query: 1735 SPTSPSYS---PSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
SPS P S S ++ S S SPS P P +
Sbjct: 389 VRHSPSIPLPHPPSALPSHVGASSSKHHRLPPSVLPGPRLSSPSPSPSLPTRRPGTPPP 447
Score = 45.9 bits (109), Expect = 2e-04
Identities = 67/311 (21%), Positives = 91/311 (29%), Gaps = 53/311 (17%)
Query: 1514 PTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSP--- 1570
P+ P P++P P S + S +S P SP
Sbjct: 151 PSLSNSRPVHELPKPSTPVLQPRRSPRKQLHRPLSLPRSLHLHNSRQHSSLHPRRSPRRQ 210
Query: 1571 -----TSPSYSPTS--PSYSPTSPSYSP----TSPSYSPTSPSYSPTSPAYSPTSPAYSP 1619
P + P SP +SP SP + T+ P S SP
Sbjct: 211 LQPAPRRPLLAENQLHPLPSPQPVRHSPGILGPSPLHPHTTRPSPPRPAFSRSPSSPLSP 270
Query: 1620 TSPAYSPTS----PSYSPTSPSYSPTSPSYSPTSPSYSPTSP----SYSPTSPAYSP--- 1668
+ P S + P S +P P+ P S P SP P
Sbjct: 271 LPRPSTRRGLLPNPRLPRASRGHLPPPTSSAPPRPNGGLRRPLHLHSSRPNSPNLRPRRI 330
Query: 1669 ---------------TSPGYSPT--SPSYSPTSPTYSPTSPSYNPQS-----AKYSPSLA 1706
S G SP S P + P P+ +P +
Sbjct: 331 RKNSLQQTRARLGHSKSLGQSPNLRSSQLPPPTKRRLRLLPVPPPKVQALPLTALAPLVR 390
Query: 1707 YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTS---PSYSPSSPTYSPSSPYNAGGGNPDY 1763
+SPS P P P + S + +S + P SSP+ SPS P G P
Sbjct: 391 HSPSIPL--PHPPSALPSHVGASSSKHHRLPPSVLPGPRLSSPSPSPSLPTRR-PGTPPP 447
Query: 1764 SPSSPQYSPSA 1774
S P SP +
Sbjct: 448 PASPPTPSPPS 458
Score = 43.2 bits (102), Expect = 0.001
Identities = 40/210 (19%), Positives = 54/210 (25%), Gaps = 31/210 (14%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTS-----PGYSPTSPGYSPTSPTYSPSSPG 1546
+ SP P +S S P S P S G+ P + +P P
Sbjct: 247 HPHTTRPSPPRPAFSRSPSSPLSPLPRPSTRRGLLPNPRLPRASRGHLPPPTSSAPPRPN 306
Query: 1547 YSPTSPAY----SPTSPSYSP------------------TSPSYSPT--SPSYSPTSPSY 1582
P + P SP+ P S SP S P +
Sbjct: 307 GGLRRPLHLHSSRPNSPNLRPRRIRKNSLQQTRARLGHSKSLGQSPNLRSSQLPPPTKRR 366
Query: 1583 SPTSPSYSP-TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
P P SP+ P + S + +S +
Sbjct: 367 LRLLPVPPPKVQALPLTALAPLVRHSPSIPLPHPPSALPSHVGASSSKHHRLPPSVLPGP 426
Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
S SPS P +P PA PT
Sbjct: 427 RLSSPSPSPSLPTRRPG-TPPPPASPPTPS 455
>gnl|CDD|218232 pfam04731, Caudal_act, Caudal like protein activation region. This
family consists of the amino termini of proteins
belonging to the caudal-related homeobox protein family.
This region is thought to mediate transcription
activation. The level of activation caused by mouse Cdx2
is affected by phosphorylation at serine 60 via the
mitogen-activated protein kinase pathway. Caudal family
proteins are involved in the transcriptional regulation
of multiple genes expressed in the intestinal epithelium,
and are important in differentiation and maintenance of
the intestinal epithelial lining. Caudal proteins always
have a homeobox DNA binding domain (pfam00046).
Length = 135
Score = 46.7 bits (111), Expect = 1e-05
Identities = 35/130 (26%), Positives = 45/130 (34%), Gaps = 13/130 (10%)
Query: 1461 MSPGYLFSPNLRLSP---VTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSP 1517
M PG + L L V+ Q+ Y G + + S + Y P
Sbjct: 1 MYPGSVRHSGLNLGAQNFVSAPQYPDYGGYHHVPGMNLDPHGQPSGAWGSP---YGPPRE 57
Query: 1518 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1577
+S PG P++ T+ T SP YSP P YSP P S S
Sbjct: 58 DWSAYGPGPGPSA-----TAATGSPGQMAYSP--PDYSPVHPPGPGPGLLQPADSGSVEQ 110
Query: 1578 TSPSYSPTSP 1587
SPS SP
Sbjct: 111 LSPSAQRRSP 120
Score = 35.9 bits (83), Expect = 0.045
Identities = 29/109 (26%), Positives = 34/109 (31%), Gaps = 6/109 (5%)
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPAYSPTSPA- 1616
++P Y P Y S Y P +S P P++ A
Sbjct: 15 AQNFVSAPQY-PDYGGYHHVPGMNLDPHGQPSGAWGSPYGPPREDWSAYGPGPGPSATAA 73
Query: 1617 -YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
SP AYSP P YSP P S S SPS SP
Sbjct: 74 TGSPGQMAYSP--PDYSPVHPPGPGPGLLQPADSGSVEQLSPSAQRRSP 120
Score = 35.1 bits (81), Expect = 0.081
Identities = 25/109 (22%), Positives = 33/109 (30%), Gaps = 6/109 (5%)
Query: 1573 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPAYSPTSPAYSPTSPAYSPTS--P 1629
++P Y P Y S Y P +S P P++
Sbjct: 15 AQNFVSAPQY-PDYGGYHHVPGMNLDPHGQPSGAWGSPYGPPREDWSAYGPGPGPSATAA 73
Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1678
+ SP +YSP P YSP P S + SP SP
Sbjct: 74 TGSPGQMAYSP--PDYSPVHPPGPGPGLLQPADSGSVEQLSPSAQRRSP 120
Score = 34.0 bits (78), Expect = 0.20
Identities = 27/109 (24%), Positives = 34/109 (31%), Gaps = 6/109 (5%)
Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT-SPAYSPTSPSYS--PTSPSYSPTSP 1643
++P Y P Y S Y P +S P S T+
Sbjct: 15 AQNFVSAPQY-PDYGGYHHVPGMNLDPHGQPSGAWGSPYGPPREDWSAYGPGPGPSATAA 73
Query: 1644 SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
+ SP +YSP P YSP P S S SP+ SP
Sbjct: 74 TGSPGQMAYSP--PDYSPVHPPGPGPGLLQPADSGSVEQLSPSAQRRSP 120
Score = 34.0 bits (78), Expect = 0.23
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 1718 SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGG--NPDYSPSSPQYSPSA 1774
S Y P + ++ SP +YSP P YSP P G G P S S Q SPSA
Sbjct: 60 SAYGPGPGPSATAATG-SPGQMAYSP--PDYSPVHPPGPGPGLLQPADSGSVEQLSPSA 115
Score = 34.0 bits (78), Expect = 0.26
Identities = 22/81 (27%), Positives = 24/81 (29%), Gaps = 3/81 (3%)
Query: 1710 SSPRLSPASPYSPT-SPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP 1768
L P S Y P +S P S T + SP PDYSP P
Sbjct: 34 PGMNLDPHGQPSGAWGSPYGPPREDWSAYGP-GPGPSATAATGSPGQMAYSPPDYSPVHP 92
Query: 1769 QYSPSAGYSPSAPGYSPSSTS 1789
P G A S S
Sbjct: 93 P-GPGPGLLQPADSGSVEQLS 112
Score = 32.4 bits (74), Expect = 0.67
Identities = 25/113 (22%), Positives = 31/113 (27%), Gaps = 7/113 (6%)
Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT-SPSYSPTSPTYSPTSPSYNPQSAKY 1701
++P Y P Y S Y P +S Y P
Sbjct: 15 AQNFVSAPQY-PDYGGYHHVPGMNLDPHGQPSGAWGSPYGPPREDWSA----YGPGPGPS 69
Query: 1702 SPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPY 1754
+ + SP SP YSP P S S SP+ SPY
Sbjct: 70 ATAATGSPGQMAYSP-PDYSPVHPPGPGPGLLQPADSGSVEQLSPSAQRRSPY 121
Score = 30.5 bits (69), Expect = 3.0
Identities = 27/108 (25%), Positives = 34/108 (31%), Gaps = 13/108 (12%)
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYS--PTSPSYSPTSP 1657
++P Y P Y S Y P +S P S T+
Sbjct: 15 AQNFVSAPQY-PDYGGYHHVPGMNLDPHGQPSGAWGSPYGPPREDWSAYGPGPGPSATAA 73
Query: 1658 SYSPTSPAYSPTSPGYSPTSPSY-------SPTSPTYSPTSPSYNPQS 1698
+ SP AYSP P YSP P S + SPS +S
Sbjct: 74 TGSPGQMAYSP--PDYSPVHPPGPGPGLLQPADSGSVEQLSPSAQRRS 119
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein
UL32. The large phosphorylated protein (UL32-like) of
herpes viruses is the polypeptide most frequently
reactive in immuno-blotting analyses with antisera when
compared with other viral proteins.
Length = 777
Score = 49.9 bits (119), Expect = 1e-05
Identities = 60/361 (16%), Positives = 89/361 (24%), Gaps = 41/361 (11%)
Query: 1486 GGMAFSPTSSPGYSPSS-----PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1540
G S +S PG SPS P PG T P + S S
Sbjct: 349 RGGGSLKLDSVDAPGTSSYLFEPGLSPS-PNSGKEMPGILTTENLDLPLA---STDSTEM 404
Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSP-SYSPTSPSYSPTS--PSYSPTSPSYSPTSPSYS 1597
P S T + + + S
Sbjct: 405 DPEDKRGGAVKINNSGILAWGLKTPGLAVNDERSIAVSSDGITDVLDPPSPLRLHSSDKV 464
Query: 1598 PTSPSYSPTSPAYSPTSPAYSP------TSPAYSPTSPSYSPTSPSYSPTS--------- 1642
S S P+ S + T+ S S S S TS
Sbjct: 465 IDSVS-PPSKRRVSAPASRLDDAKRPEVTATPESSGSDSEGGASGREDETSSDAESVVSI 523
Query: 1643 PSYSPTSPSYSPTSPSYSPTS------PAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN- 1695
P + + P SP A S SP + SP P+ + + +
Sbjct: 524 KELRPRIGFINKSPPPKSPPKSRRTLIVALSLASPS-TAGSPRPKPSLGKFVIGTDPFAF 582
Query: 1696 PQSAKYSPSLAY-SPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPY 1754
+ + + ++ + + P S P S T +PSS +
Sbjct: 583 ANTVRLTDNMRGGNGVGSSVKPKGSASSKPLT-GPGSDLKPATLNGKTPSSSLVGAAR-- 639
Query: 1755 NAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSS 1814
NAG + PS S TS + ++D D K +
Sbjct: 640 NAGASSKVKIPSGLGGFTSPISL-LESALEDVLTSATSTPVKKNDPYLWDTNGEKAGGGT 698
Query: 1815 R 1815
Sbjct: 699 E 699
Score = 40.3 bits (94), Expect = 0.012
Identities = 39/245 (15%), Positives = 66/245 (26%), Gaps = 24/245 (9%)
Query: 1535 PTSPTYSPSSPGYSPTS------PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1588
P + S P SP A S SPS + SP P+ + + +
Sbjct: 528 PRIGFINKSPPPKSPPKSRRTLIVALSLASPS-TAGSPRPKPSLGKFVIGTDP--FAFAN 584
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
+ + + S P S +S T P + + +PS S + +
Sbjct: 585 TVRLTDNMRGGNGVGSSVKPKGSASSKP--LTGPGSDLKPATLNGKTPSSSLVGAARN-A 641
Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYS 1708
S PS + + + ++P P + + + S
Sbjct: 642 GASSKVKIPSGLGGFTSPISLLESALEDVLTSATSTPVKKND-PYLWDTNGEKAGGGTES 700
Query: 1709 PSS----PRLSPASPYSPT--SPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPD 1762
S+ + + +P P S S SSP S P G
Sbjct: 701 ASTTDVFQNFAGLNKKTPVGGPFQPKPPLSRALD-----SASSPGGSGGKPGLDGVEGAK 755
Query: 1763 YSPSS 1767
Sbjct: 756 GKDDD 760
>gnl|CDD|111993 pfam03157, Glutenin_hmw, High molecular weight glutenin subunit.
Members of this family include high molecular weight
subunits of glutenin. This group of gluten proteins is
thought to be largely responsible for the elastic
properties of gluten, and hence, doughs. Indeed, glutenin
high molecular weight subunits are classified as
elastomeric proteins, because the glutenin network can
withstand significant deformations without breaking, and
return to the original conformation when the stress is
removed. Elastomeric proteins differ considerably in
amino acid sequence, but they are all polymers whose
subunits consist of elastomeric domains, composed of
repeated motifs, and non-elastic domains that mediate
cross-linking between the subunits. The elastomeric
domain motifs are all rich in glycine residues in
addition to other hydrophobic residues. High molecular
weight glutenin subunits have an extensive central
elastomeric domain, flanked by two terminal non-elastic
domains that form disulphide cross-links. The central
elastomeric domain is characterized by the following
three repeated motifs: PGQGQQ, GYYPTS[P/L]QQ, GQQ. It
possesses overlapping beta-turns within and between the
repeated motifs, and assumes a regular helical secondary
structure with a diameter of approx. 1.9 nm and a pitch
of approx. 1.5 nm.
Length = 779
Score = 50.1 bits (118), Expect = 1e-05
Identities = 59/306 (19%), Positives = 74/306 (24%), Gaps = 26/306 (8%)
Query: 1497 GYSP---SSPGYSPSSPGYSPTSPGYSPTSPGYSPT-SPGYSPTS-PTYSPSSPGYSPTS 1551
G P PG GY P S PG+ PTS G+ S
Sbjct: 189 GQQPGQGQQPGQGQQGQQLGQGQQGYYPGQLQQSGQGQPGHYPTSLQQLGQGQQGHYLAS 248
Query: 1552 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPAY 1610
P P + + P P + P SP
Sbjct: 249 PQQPGQGQQPGQLQQPAQGQQPEQGQQGQQPAQGQQGHQPAQGQQPGQGQPGHYPASPQQ 308
Query: 1611 SPT-SPAYSPTSPAYSPTS--PSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPAY 1666
P + P S S P + P P + P SP
Sbjct: 309 PGQGQPGHYPASSQQPTQSQEPGQGQQGQQVGQGQQAQIPAQGQQPGQGQPGHYPASPLQ 368
Query: 1667 S-PTSPGYSPTSPSYS----------PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLS 1715
P PG+ TS ++P P Q +
Sbjct: 369 QGPGQPGHYLTSLQQLGQGQQIGQLQQSAPGQKGQQPGQGQQPGQGQQGQQPGQGEQEQQ 428
Query: 1716 PASP---YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
P Y PTS P P Y P+S G G P + P+S Q P
Sbjct: 429 PGQGQPGYYPTSLQ-QPGQGQQPGQWQQPGQGQPGYYPTSLLQPGQGQPGHDPASLQ-QP 486
Query: 1773 SAGYSP 1778
G P
Sbjct: 487 GQGQQP 492
Score = 47.0 bits (110), Expect = 1e-04
Identities = 58/321 (18%), Positives = 71/321 (22%), Gaps = 14/321 (4%)
Query: 1486 GGMAFSPTSSPGYSPSSPGYSPSSPGYS-PTSPGYSPTSP---GYSPTSPGYSPTSPTYS 1541
G A P PG+ P+SP P PG+ TS G ++P
Sbjct: 342 GQQAQIPAQGQQPGQGQPGHYPASPLQQGPGQPGHYLTSLQQLGQGQQIGQLQQSAPGQK 401
Query: 1542 PSSPGY-SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
PG P P Y PTS P
Sbjct: 402 GQQPGQGQQPGQGQQGQQPGQGEQEQQPGQGQPGYYPTSLQ-QPGQGQQPGQWQQPGQGQ 460
Query: 1601 PSYSPTSPAY-SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1659
P Y PTS P + P S +
Sbjct: 461 PGYYPTSLLQPGQGQPGHDPASLQQPGQGQQPGQLQQPAQGQPGQQLAQGQQGQQPAQVQ 520
Query: 1660 SPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
PA P + P Q +
Sbjct: 521 QGQQPAQGQQGQQLGQGQQGQQPGQGQH-PAQGEQGQQPGQGQQGQQPGQGQQPGQGQPW 579
Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSP-----TYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
Y PTSP S P Y +SP G G Y P+S Q P
Sbjct: 580 YYPTSPQESGQGQQPGQWQQPGQWQQPGQGQPGYYLTSPLQLGQGQQGYYPTSLQ-QPGQ 638
Query: 1775 GYSPSAPGYSPSSTSQYTPQT 1795
G P S + P +
Sbjct: 639 GQQPGQWQQSGQGQHGHCPMS 659
Score = 45.5 bits (106), Expect = 3e-04
Identities = 71/385 (18%), Positives = 87/385 (22%), Gaps = 95/385 (24%)
Query: 1496 PGYSPSSPGYSPS--------SPGYSPTSPGYSPTSPGYSPTSPGYSPT----------- 1536
PGY P+SP G PGY PTSP + P
Sbjct: 106 PGYYPTSPQQPGQLQQPAQGQQIGQGQQGRQPGQGQPGYYPTSPQHQPGQLQQPAQGQQG 165
Query: 1537 ---------------------SPTYSP---SSPGYSPTSPAYSPTSPSYSPTS------- 1565
P PG Y P
Sbjct: 166 QQIGQGQQGQQPEQGQQPGQGQQGQQPGQGQQPGQGQQGQQLGQGQQGYYPGQLQQSGQG 225
Query: 1566 -PSYSPTS--------PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA 1616
P + PTS + SP P +
Sbjct: 226 QPGHYPTSLQQLGQGQQGHYLASPQQPGQGQQPGQLQQPAQGQQPEQGQQGQQPAQGQQG 285
Query: 1617 YSPTS--------PAYSPTSPSYSPT-SPSYSPTSPSYSPTS--PSYSPTSPSYSPTSPA 1665
+ P P + P SP P + P S S P A
Sbjct: 286 HQPAQGQQPGQGQPGHYPASPQQPGQGQPGHYPASSQQPTQSQEPGQGQQGQQVGQGQQA 345
Query: 1666 YSPTS--------PGYSPTSPSYS-PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSP 1716
P PG+ P SP P P + TS Q + +P P
Sbjct: 346 QIPAQGQQPGQGQPGHYPASPLQQGPGQPGHYLTSLQQLGQGQQIGQLQQSAPGQKGQQP 405
Query: 1717 ASPYSP------TSPNYSPTSSSYSPTSPSYSPSSPTYS-----PSSPYNAGGGNPDYSP 1765
P P P Y P+S P G G P Y P
Sbjct: 406 GQGQQPGQGQQGQQPGQGEQEQQPGQGQPGYYPTSLQQPGQGQQPGQWQQPGQGQPGYYP 465
Query: 1766 SSPQYSPSAGYSPSAPGYSPSSTSQ 1790
+S P G PG+ P+S Q
Sbjct: 466 TSLL-QPGQG----QPGHDPASLQQ 485
Score = 43.9 bits (102), Expect = 9e-04
Identities = 66/343 (19%), Positives = 80/343 (23%), Gaps = 48/343 (13%)
Query: 1490 FSPTSSPGYSPSSPGY-SPSSPGYSPTSPGYSPTS----PGYSPTSPGYSPTSPTYSPSS 1544
+ +SP PG SP PG PG GY PTS
Sbjct: 47 YPSVTSPQQGSYYPGQASPQQPGQG-QQPGKGQEPGQGQQGYYPTSLQQPGQGQQIEKGK 105
Query: 1545 PGYSPTSPAYSPT--------SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1596
PGY PTSP P Y PTSP + P
Sbjct: 106 PGYYPTSPQQPGQLQQPAQGQQIGQGQQGRQPGQGQPGYYPTSPQHQPGQLQQPAQGQQG 165
Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS------- 1649
P P Y P
Sbjct: 166 QQIGQGQQGQQPEQGQQPGQGQQGQQPGQGQQPGQGQQGQQLGQGQQGYYPGQLQQSGQG 225
Query: 1650 -PSYSPTS--------PSYSPTSPAY--SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
P + PTS + SP PG P+ Q
Sbjct: 226 QPGHYPTSLQQLGQGQQGHYLASPQQPGQGQQPGQLQQPAQGQQPEQGQQGQQPAQGQQG 285
Query: 1699 AKYSPSLAYSPSSPRLSPASPYSP--TSPNYSPTSSSYSPTS---------PSYSPSSPT 1747
+ + P PASP P P + P SS S
Sbjct: 286 HQPAQGQQPGQGQPGHYPASPQQPGQGQPGHYPASSQQPTQSQEPGQGQQGQQVGQGQQA 345
Query: 1748 YSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
P+ G G P + P+SP P PG+ +S Q
Sbjct: 346 QIPAQGQQPGQGQPGHYPASPLQQ-----GPGQPGHYLTSLQQ 383
Score = 40.8 bits (94), Expect = 0.007
Identities = 55/320 (17%), Positives = 68/320 (21%), Gaps = 27/320 (8%)
Query: 1479 AQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYS----------PTSPGYSPTSPG--- 1525
P G P S P PG+ +S ++PG PG
Sbjct: 350 QGQQPGQGQPGHYPASPLQQGPGQPGHYLTSLQQLGQGQQIGQLQQSAPGQKGQQPGQGQ 409
Query: 1526 -----YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1580
PG PGY PTS P P Y PTS
Sbjct: 410 QPGQGQQGQQPGQGEQEQQPGQGQPGYYPTSLQ-QPGQGQQPGQWQQPGQGQPGYYPTSL 468
Query: 1581 SY-SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS 1639
P + P S + P+
Sbjct: 469 LQPGQGQPGHDPASLQQPGQGQQPGQLQQPAQGQPGQQLAQGQQGQQPAQVQQGQQPAQG 528
Query: 1640 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT----SPTYSPTSPSYN 1695
P + G P P Y PTSP +
Sbjct: 529 QQGQQLGQGQQGQQPGQGQHPAQGEQGQQPGQGQQGQQPGQGQQPGQGQPWYYPTSPQES 588
Query: 1696 PQSAKYSP-SLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPY 1754
Q + P Y + Y PTS P
Sbjct: 589 GQGQQPGQWQQPGQWQQPGQGQPGYYLTSPLQLGQGQQGYYPTSLQQPGQGQ--QPGQWQ 646
Query: 1755 NAGGGNPDYSPSSPQYSPSA 1774
+G G + P SPQ S A
Sbjct: 647 QSGQGQHGHCPMSPQLSGQA 666
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 47.4 bits (112), Expect = 6e-05
Identities = 33/157 (21%), Positives = 54/157 (34%), Gaps = 7/157 (4%)
Query: 1508 SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
S P S +P P + G+ + SS T + ++P P
Sbjct: 179 SWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPEPQTEPPP 238
Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1627
S SP + P++ S ++ T PA S +S +P PT
Sbjct: 239 ----SQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATP--PPT 292
Query: 1628 SPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTS 1663
+ P+ PT+ + S + P SP +PT+
Sbjct: 293 TKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTT 329
Score = 47.0 bits (111), Expect = 7e-05
Identities = 38/160 (23%), Positives = 58/160 (36%), Gaps = 7/160 (4%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
TS P S +P P + G+ + +S T T + S+P T
Sbjct: 176 KTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSSNPE-PQT 234
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
P S PS SP P P++ S ++ T P+ S +S +P
Sbjct: 235 EPPPSQRGPSGSPQHP---PSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATP-- 289
Query: 1611 SPTSPAYSPTSPAYSPTSPSYS-PTSPSYSPTSPSYSPTS 1649
PT+ P PT+ + S + P SP +PT+
Sbjct: 290 PPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTT 329
Score = 42.3 bits (99), Expect = 0.002
Identities = 43/188 (22%), Positives = 69/188 (36%), Gaps = 12/188 (6%)
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
T+ T S ++ P S +P P + + + + +S T
Sbjct: 169 KTAVTTSKTTS-----WPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQG 223
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1654
+ + ++P T P S P+ SP P S TS S T T +P + S +
Sbjct: 224 TTTSSNPE-PQTEPPPSQRGPSGSPQHPP-STTSQDQSTTGDGQEHTQRRKTPPATS-NR 280
Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS-PTSPSYNPQSAKYSPSLAYSPSSPR 1713
SP + T P PT+ P+ PT+ T S + P +P + +P+
Sbjct: 281 RSPHSTATPP---PTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTTQNLVDCKE 337
Query: 1714 LSPASPYS 1721
L P P S
Sbjct: 338 LDPPKPNS 345
Score = 42.3 bits (99), Expect = 0.002
Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 8/163 (4%)
Query: 1528 PTSPGYSPTS--PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
T+ S T+ PT S +P P + + + + +S T + + +
Sbjct: 169 KTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSS 228
Query: 1586 SP---SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
+P + P S SP + P++ + ++ T P+ S +S +
Sbjct: 229 NPEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTAT 288
Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY-SPTSPSYSPTS 1684
P PT+ P+ PT+ S +SP + SP +PT+
Sbjct: 289 P--PPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTT 329
Score = 40.8 bits (95), Expect = 0.006
Identities = 35/178 (19%), Positives = 65/178 (36%), Gaps = 9/178 (5%)
Query: 1556 PTSPSYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
T+ + S T+ P+ S +P P + + + + +S T + +
Sbjct: 169 KTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTTSS 228
Query: 1614 SP---AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
+P P S SP + P++ S ++ T P+ S +S +
Sbjct: 229 NPEPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTAT 288
Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYS--PSLAYSPSSPRLSPASPYSPTSPN 1726
P PT+ PT PT+ + + S +S P + +P++ L P PN
Sbjct: 289 P--PPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTTQNLVDCKELDPPKPN 344
Score = 39.6 bits (92), Expect = 0.014
Identities = 32/170 (18%), Positives = 56/170 (32%), Gaps = 13/170 (7%)
Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
T+ + S T+ P+ S +P P + + + +S T
Sbjct: 169 KTAVTTSKTTSW-----PTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSSTEPVGTQG 223
Query: 1686 TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY---- 1741
T + ++P + PS SP+ P++ S + +P
Sbjct: 224 TTTSSNP---EPQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNR 280
Query: 1742 -SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
SP S P + G P P++ S S+ S PG + T+Q
Sbjct: 281 RSPHSTATPPPTTKRQETGRPTPRPTATTQSGSSPPHSSPPGVQANPTTQ 330
Score = 31.9 bits (72), Expect = 3.5
Identities = 27/106 (25%), Positives = 36/106 (33%), Gaps = 7/106 (6%)
Query: 1703 PSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPD 1762
P A + S P PT P+ T S T + ++ S+ G
Sbjct: 168 PKTAVTTSKTTSWPTEVSHPTYPS-QVTPQSQPATQGHQTATANQRLSSTEPVGTQGTTT 226
Query: 1763 YSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNT 1808
S PQ P PS G PS + Q+ P T D +T D
Sbjct: 227 SSNPEPQTEPP----PSQRG--PSGSPQHPPSTTSQDQSTTGDGQE 266
>gnl|CDD|215026 smart01104, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4.
The C-terminal domain of the transcription elongation
factor protein Spt5 is necessary for binding to Spt4 to
form the functional complex that regulates early
transcription elongation by RNA polymerase II. The
complex may be involved in pre-mRNA processing through
its association with mRNA capping enzymes. This CTD
domain carries a regular nonapeptide repeat that can be
present in up to 18 copies, as in S. pombe. The repeat
has a characteristic TPA motif.
Length = 121
Score = 43.7 bits (103), Expect = 8e-05
Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 4/110 (3%)
Query: 1573 PSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY 1631
P++ +P + + S S +P +PA+ P S T PA+ S
Sbjct: 15 PAWGSRTPGTAAGGAPTARGGSGSRTPAWGGAGSRTPAWGGAGPTGSRT-PAWGGASAWG 73
Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
+ S S + +Y +P Y T AY P +PG + S S
Sbjct: 74 N--KSSEGSASSWAAGPGGAYGAPTPGYGGTPSAYGPATPGGGAMAGSAS 121
Score = 42.9 bits (101), Expect = 2e-04
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Query: 1643 PSYSPTSPSYSPTSPSYSPT-SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY 1701
P++ +P + + S + +P G +P++ PT S T P++ SA
Sbjct: 15 PAWGSRTPGTAAGGAPTARGGSGSRTPAWGGAGSRTPAWGGAGPTGSRT-PAWGGASAWG 73
Query: 1702 SPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYS 1749
+ S S SS P Y +P Y T S+Y P +P + + S
Sbjct: 74 NKSSEGSASSWAAGPGGAYGAPTPGYGGTPSAYGPATPGGGAMAGSAS 121
Score = 42.5 bits (100), Expect = 2e-04
Identities = 22/126 (17%), Positives = 43/126 (34%), Gaps = 5/126 (3%)
Query: 1486 GGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP 1545
GG + +S +P+ +P + + S +P G +P + +
Sbjct: 1 GGRTPAWGASGSKTPAWGSRTPGTAAGGAPTARGG--SGSRTPAWGGAGSRTPAWG-GAG 57
Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
+PA+ S + S S + +Y +P Y T +Y P +P
Sbjct: 58 PTGSRTPAWGGASAWGN--KSSEGSASSWAAGPGGAYGAPTPGYGGTPSAYGPATPGGGA 115
Query: 1606 TSPAYS 1611
+ + S
Sbjct: 116 MAGSAS 121
Score = 41.4 bits (97), Expect = 5e-04
Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 8/115 (6%)
Query: 1483 PYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSP 1542
P G +P ++ G +P++ G S S + +P G PT +P +
Sbjct: 15 PAWGSR--TPGTAAGGAPTARGGSGSRTPAWGGAGSRTPAWGGAGPTGS----RTPAWGG 68
Query: 1543 SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
+S + + S + +Y +P Y T +Y P +P + S S
Sbjct: 69 ASAWGN--KSSEGSASSWAAGPGGAYGAPTPGYGGTPSAYGPATPGGGAMAGSAS 121
Score = 41.0 bits (96), Expect = 6e-04
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 12/121 (9%)
Query: 1503 PGYSPSS---PGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA---YSP 1556
P + S P + +PG + PT+ G S + + +P
Sbjct: 5 PAWGASGSKTPAWGSRTPGTAAGGA---PTARGGSGSRTPAWGGAGSRTPAWGGAGPTGS 61
Query: 1557 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-AYSPTSP 1615
+P++ S + S S + +Y +P Y T +Y P +P +
Sbjct: 62 RTPAWGGASAWGN--KSSEGSASSWAAGPGGAYGAPTPGYGGTPSAYGPATPGGGAMAGS 119
Query: 1616 A 1616
A
Sbjct: 120 A 120
Score = 39.8 bits (93), Expect = 0.002
Identities = 27/131 (20%), Positives = 41/131 (31%), Gaps = 15/131 (11%)
Query: 1443 GMTPA-RSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPS 1501
G TPA + S TP G +PG + G + + +P+
Sbjct: 2 GRTPAWGASGSKTPAW-GSRTPGT--------AAGGAPTARGGSGSRTPAWGGAGSRTPA 52
Query: 1502 SPG---YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
G +P + S + S + Y +PGY T AY P +
Sbjct: 53 WGGAGPTGSRTPAWGGASAWGN--KSSEGSASSWAAGPGGAYGAPTPGYGGTPSAYGPAT 110
Query: 1559 PSYSPTSPSYS 1569
P + S S
Sbjct: 111 PGGGAMAGSAS 121
Score = 39.4 bits (92), Expect = 0.002
Identities = 27/132 (20%), Positives = 46/132 (34%), Gaps = 29/132 (21%)
Query: 1664 PAYSPTSPGYSPTSPSYSPTSPTYSP-TSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSP 1722
PA+ +PG + PT+ S +P++ ++ +P A P
Sbjct: 15 PAWGSRTPGTAAGGA---PTARGGSGSRTPAWGGAGSR----------TPAWGGAGPTGS 61
Query: 1723 TSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPG 1782
+P + S+ + +S S SS P Y A +P G +PSA G
Sbjct: 62 RTPAWGGASAWGNKSSEG-SASSWAAGPGGAYGAP-------------TPGYGGTPSAYG 107
Query: 1783 Y-SPSSTSQYTP 1793
+P +
Sbjct: 108 PATPGGGAMAGS 119
Score = 38.7 bits (90), Expect = 0.004
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 4/110 (3%)
Query: 1580 PSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1638
P++ +P + + S S +P +PA+ P S T P++ S
Sbjct: 15 PAWGSRTPGTAAGGAPTARGGSGSRTPAWGGAGSRTPAWGGAGPTGSRT-PAWGGASAWG 73
Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS 1688
+ S S + +Y +P Y T Y P +P + + S
Sbjct: 74 N--KSSEGSASSWAAGPGGAYGAPTPGYGGTPSAYGPATPGGGAMAGSAS 121
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor.
Length = 670
Score = 47.0 bits (111), Expect = 9e-05
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 5/120 (4%)
Query: 1480 QFSP--YVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTS 1537
+F+P Y+ G A+ P Y P +P S +PT + ++ +S SP +
Sbjct: 537 KFTPAQYIQGDAWIPGKGVPYIPGLFAGNPGSTNSTPTGSA-ASSNTTFSSDSPSTV-VA 594
Query: 1538 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
P+ SP + G+ + PA S S + P+ SPS +P+SP S S SP S
Sbjct: 595 PSTSPPA-GHLGSPPATPSKIVSPSTSPPASHLGSPSTTPSSPESSIKVASTETASPESS 653
Score = 46.2 bits (109), Expect = 1e-04
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 11/108 (10%)
Query: 1542 PSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1601
P PG +P + ++P+ S + ++ ++S SPS +PS SP P+ SP
Sbjct: 556 PYIPGLFAGNPGSTNSTPTGSA-----ASSNTTFSSDSPSTV-VAPSTSP--PAGHLGSP 607
Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
+P+ TSP P S SP++ SP S ++ + SP S
Sbjct: 608 PATPSKIVSPSTSP---PASHLGSPSTTPSSPESSIKVASTETASPES 652
Score = 46.2 bits (109), Expect = 2e-04
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
Query: 1521 PTSPGYSPTSPGYSPTSPTYS--PSSPGYSPTSPAYSPTSPSYSPTS--PSYSPTSPSYS 1576
P PG +PG + ++PT S S+ +S SP+ +PS SP + P +PS
Sbjct: 556 PYIPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTV-VAPSTSPPAGHLGSPPATPSKI 614
Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
+ + P S SP++ SP S ++ SP S
Sbjct: 615 VSPSTSPPASHLGSPSTTPSSPESSIKVASTETASPES 652
Score = 45.5 bits (107), Expect = 3e-04
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1620
Y P + +P S + +PT S + ++ ++S SPS +PS SP PA SP +P+
Sbjct: 557 YIPGLFAGNPGSTNSTPTG-SAASSNTTFSSDSPSTV-VAPSTSP--PAGHLGSPPATPS 612
Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
TSP P S SP++ SP S ++ + SP S
Sbjct: 613 KIVSPSTSP---PASHLGSPSTTPSSPESSIKVASTETASPES 652
Score = 45.1 bits (106), Expect = 3e-04
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
Y P + +P S + +PT S + ++ ++S SPS +PS SP P+ SP +P+
Sbjct: 557 YIPGLFAGNPGSTNSTPTG-SAASSNTTFSSDSPSTV-VAPSTSP--PAGHLGSPPATPS 612
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
TSP P S SP++ SP S ++ + SP S
Sbjct: 613 KIVSPSTSP---PASHLGSPSTTPSSPESSIKVASTETASPES 652
Score = 43.9 bits (103), Expect = 8e-04
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 1514 PTSPGYSPTSPGYSPTSPGYS--PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT 1571
P PG +PG + ++P S ++ T+S SP P SP +
Sbjct: 556 PYIPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIV 615
Query: 1572 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
SPS SP P+ SPS +P+SP S S SP S
Sbjct: 616 SPSTSP--PASHLGSPSTTPSSPESSIKVASTETASPESS 653
Score = 43.2 bits (101), Expect = 0.002
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT 1634
Y P + +P S + +PT S + ++ ++S SP+ P SP +
Sbjct: 557 YIPGLFAGNPGSTNSTPTG-SAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIV 615
Query: 1635 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 1674
SPS SP P+ SPS +P+SP S + SP S
Sbjct: 616 SPSTSP--PASHLGSPSTTPSSPESSIKVASTETASPESS 653
Score = 42.8 bits (100), Expect = 0.002
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
Y P + +P S + +PT A + ++ +S SP+ +PS SP P+ SP +P+
Sbjct: 557 YIPGLFAGNPGSTNSTPTGSA-ASSNTTFSSDSPSTV-VAPSTSP--PAGHLGSPPATPS 612
Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
TSP P S SP++ SP S ++ T SP S
Sbjct: 613 KIVSPSTSP---PASHLGSPSTTPSSPESSIKVASTETASPES 652
Score = 42.4 bits (99), Expect = 0.003
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS 1704
Y P + +P S + +PT A + ++ +S SPS +P+ SP P+ + S +PS
Sbjct: 557 YIPGLFAGNPGSTNSTPTGSA-ASSNTTFSSDSPSTV-VAPSTSP--PAGHLGSPPATPS 612
Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSS 1752
SPS+ P S SP+++ SP S S+ T SP S
Sbjct: 613 KIVSPSTS--------PPASHLGSPSTTPSSPESSIKVASTETASPES 652
Score = 42.0 bits (98), Expect = 0.003
Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
Y P + +P S + +PT S + ++ +S SP+ P SP +
Sbjct: 557 YIPGLFAGNPGSTNSTPTG-SAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIV 615
Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
SPS SP P+ SPS +P+SP S SP S
Sbjct: 616 SPSTSP--PASHLGSPSTTPSSPESSIKVASTETASPESS 653
Score = 40.5 bits (94), Expect = 0.009
Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
Y P A +P S +PT A + ++ ++S SPS +PS SP P+ SP +P+
Sbjct: 557 YIPGLFAGNPGSTNSTPTGSA-ASSNTTFSSDSPSTV-VAPSTSP--PAGHLGSPPATPS 612
Query: 1663 SPAYSPTS-PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS 1711
TS P SPS +P+SP S S S + S +A + SS
Sbjct: 613 KIVSPSTSPPASHLGSPSTTPSSPESSIKVASTETASPESSIKVASTESS 662
Score = 40.1 bits (93), Expect = 0.012
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 13/117 (11%)
Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSS--SYSPTSPSYSPS 1744
Y P + NP S +P+ + + S+ S SP + +P+ SP + P +PS S
Sbjct: 557 YIPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPATPSKIVS 616
Query: 1745 SPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDST 1801
T P+S SP +PS+ S + +++ + + + +S+
Sbjct: 617 PSTSPPAS-----------HLGSPSTTPSSPESSIKVASTETASPESSIKVASTESS 662
Score = 37.8 bits (87), Expect = 0.057
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 10/125 (8%)
Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY 1727
P PG +P + ++PT S + S S+ SPS +PS+ + P +P+
Sbjct: 556 PYIPGLFAGNPGSTNSTPTGS-AASSNTTFSSD-SPSTVVAPSTSPPAGHLGSPPATPSK 613
Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
+ S+ P S SPS+ SP S S+ SP + ++ S S
Sbjct: 614 IVSPSTSPPASHLGSPSTTPSSPESSIK--------VASTETASPESSIKVASTESSVSM 665
Query: 1788 TSQYT 1792
S T
Sbjct: 666 VSMST 670
Score = 37.8 bits (87), Expect = 0.059
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 1450 PVSGTPYHDGMMS--PGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSP-----GYSPSS 1502
P G PY G+ + PG S + ++ FS +P++SP G P++
Sbjct: 551 PGKGVPYIPGLFAGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGHLGSPPAT 610
Query: 1503 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSS 1544
P S P S SP++ SP S ++ T SP S
Sbjct: 611 PSKIVSPSTSPPASHLGSPSTTPSSPESSIKVASTETASPES 652
Score = 37.4 bits (86), Expect = 0.086
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS--PGYSPTSPSYS 1681
Y P + +P S + +PT S + ++ ++S SPS +P+ SP + G P +PS
Sbjct: 557 YIPGLFAGNPGSTNSTPTG-SAASSNTTFSSDSPSTV-VAPSTSPPAGHLGSPPATPSKI 614
Query: 1682 PTSPTYSPT----SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYS 1735
+ T P SPS P S + S +A + ++ SP S S S + S S
Sbjct: 615 VSPSTSPPASHLGSPSTTPSSPESSIKVASTETA---SPESSIKVASTESSVSMVSMS 669
Score = 32.8 bits (74), Expect = 2.3
Identities = 32/99 (32%), Positives = 42/99 (42%), Gaps = 8/99 (8%)
Query: 1709 PSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPS-- 1766
P P L +P S S +SS + T S SPS+ +SP G+P +PS
Sbjct: 556 PYIPGLFAGNPGSTNSTPTGSAASSNT-TFSSDSPSTVVAPSTSPPAGHLGSPPATPSKI 614
Query: 1767 -SPQYSPSAGY--SPSAPGYSP--SSTSQYTPQTNRDDS 1800
SP SP A + SPS SP S T + + S
Sbjct: 615 VSPSTSPPASHLGSPSTTPSSPESSIKVASTETASPESS 653
>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein. This family includes the
hamartin protein which is thought to function as a tumour
suppressor. The hamartin protein interacts with the
tuberin protein pfam03542. Tuberous sclerosis complex
(TSC) is an autosomal dominant disorder and is
characterized by the presence of hamartomas in many
organs, such as brain, skin, heart, lung, and kidney. It
is caused by mutation either TSC1 or TSC2 tumour
suppressor gene. TSC1 encodes a protein, hamartin,
containing two coiled-coil regions, which have been shown
to mediate binding to tuberin. The TSC2 gene codes for
tuberin pfam03542. These two proteins function within the
same pathway(s) regulating cell cycle, cell growth,
adhesion, and vesicular trafficking.
Length = 667
Score = 46.5 bits (110), Expect = 1e-04
Identities = 54/290 (18%), Positives = 86/290 (29%), Gaps = 24/290 (8%)
Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYS---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1588
GYS + + P+S P+ S TS S S S S + + S
Sbjct: 273 GYSFSRSSAYPNSSPRQALPPSISLPQNTSTSGSLHSAQTSRRPNTTFDKAASSGTKDSL 332
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
+SP+S T PS SP SP++ + S P S S TSP P
Sbjct: 333 WSPSSLCGMATPPSSIGMSPLILSLSPSHLSGRAPGTTGSGKGEPASESTPSTSP--PPP 390
Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS---L 1705
+ ++ +S + + +S S + + L
Sbjct: 391 GLADDIVRAIFATSSRSAPRKEELQNESSFPKLVRQENLQNIEKSAEGGILDAAVTEELL 450
Query: 1706 AYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSP 1765
+ L SP S S + S PD P
Sbjct: 451 KLTNEKDDLGSRGLDSPFS--RDTLLGSQRNKAQPELLVS--------------TPDKGP 494
Query: 1766 SSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSSR 1815
+ Q + + S P +P + P + D+ T+ ++ SR
Sbjct: 495 AESQSAANLRVSWFTPIENPMREEKSAPASEEDEQTSLEESLISPSPCSR 544
Score = 42.3 bits (99), Expect = 0.002
Identities = 32/153 (20%), Positives = 45/153 (29%), Gaps = 4/153 (2%)
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1654
S PT S ++ S A P+ TS S S S S +
Sbjct: 262 SLDPTETSSEDGYSFSRSSAYPNSSPRQALPPSISLPQNTSTSGSLHSAQTSRRPNTTFD 321
Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
+ S +SP+S T PS SP SPS+ A +
Sbjct: 322 KAASSGTKDSLWSPSSLCGMATPPSSIGMSPLILSLSPSHLSGRAPGTT----GSGKGEP 377
Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPT 1747
+ S S + P + S S+P
Sbjct: 378 ASESTPSTSPPPPGLADDIVRAIFATSSRSAPR 410
Score = 39.2 bits (91), Expect = 0.020
Identities = 44/158 (27%), Positives = 57/158 (36%), Gaps = 11/158 (6%)
Query: 1560 SYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPAYSPTSPAY 1617
S PT S S S S P+ SP S P + TS S + P +
Sbjct: 262 SLDPTETSSEDGYSFSRSSAYPNSSPRQALPPSISLPQNTSTSGSLHSAQTSRRPNTTFD 321
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG-YSPT 1676
S +SP+S T PS SP SPS+ + A T G P
Sbjct: 322 KAAS--SGTKDSLWSPSSLCGMATPPSSIGMSPLILSLSPSH-LSGRAPGTTGSGKGEPA 378
Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
S S TSP P + + A ++ S S S+PR
Sbjct: 379 SESTPSTSP--PPPGLADDIVRAIFATS---SRSAPRK 411
Score = 38.8 bits (90), Expect = 0.030
Identities = 34/147 (23%), Positives = 51/147 (34%), Gaps = 9/147 (6%)
Query: 1493 TSSPGYSPSSPGYSPSSPGYSPTSPGYS-PTSPGYSPT--SPGYSPTSPTYSPSSPGYSP 1549
+S GYS S P+S P S P + S + S S T +
Sbjct: 269 SSEDGYSFSRSSAYPNSSPRQALPPSISLPQNTSTSGSLHSAQTSRRPNTTFDKAASSGT 328
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
+SP+S T PS SP SPS+ +P + P+ S ++P+
Sbjct: 329 KDSLWSPSSLCGMATPPSSIGMSPLILSLSPSHLS---GRAPGTTGSGKGEPA-SESTPS 384
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
SP P + S ++P
Sbjct: 385 TSPPPPG--LADDIVRAIFATSSRSAP 409
Score = 31.5 bits (71), Expect = 5.6
Identities = 33/150 (22%), Positives = 48/150 (32%), Gaps = 19/150 (12%)
Query: 1470 NLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYS-PSSPGYSPT--SPGYSPTSPGY 1526
L L P + Y + + +S P S P + S + S S
Sbjct: 260 KLSLDPTETSSEDGYSFSRSSAYPNSSPRQALPPSISLPQNTSTSGSLHSAQTSRRPNTT 319
Query: 1527 SPTSPGYSPTSPTYSPSS-PGYS--PTSPAYSPTSPSYSPTSPSY-----------SPTS 1572
+ +SPSS G + P+S SP S SP+ S P S
Sbjct: 320 FDKAASSGTKDSLWSPSSLCGMATPPSSIGMSPLILSLSPSHLSGRAPGTTGSGKGEPAS 379
Query: 1573 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
S TSP P + ++ +S S
Sbjct: 380 ESTPSTSP--PPPGLADDIVRAIFATSSRS 407
Score = 30.7 bits (69), Expect = 8.6
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 13/114 (11%)
Query: 1444 MTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYS--PS 1501
+ P+ S T + S PN D S +SP+S G + PS
Sbjct: 291 LPPSISLPQNTSTSGSLHSAQTSRRPNTTF----DKAASSGTKDSLWSPSSLCGMATPPS 346
Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYS 1555
S G SP SP+ G +P + G P S S+P SP P +
Sbjct: 347 SIGMSPLILSLSPSHL------SGRAPGTTGSGKGEPA-SESTPSTSPPPPGLA 393
>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS
box-containing transcription factors [Transcription].
Length = 412
Score = 46.2 bits (109), Expect = 1e-04
Identities = 43/253 (16%), Positives = 71/253 (28%), Gaps = 14/253 (5%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTS--PGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1548
+++P S P S +S P P S G T+ T
Sbjct: 158 PCSNAPSDSSEEPS-SSASFSVDPNDNNPMGSFQHNGSPQTNFIPLQNPQTQQYQQH--- 213
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1608
+S PT P + + P + P S T S + S + P
Sbjct: 214 -SSRKDHPTVPHS--NTNNGRPPAKFMIPELHSSHSTLDLPSDFISDSGFPNQSSTSIFP 270
Query: 1609 AYS---PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1665
S +P + P +P YS S S T P P+ SP + S
Sbjct: 271 LDSAIIQITPPHLPNNPPQENRHELYSNDSSMVSETPPP--KNLPNGSPNQSPLNNLSRG 328
Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
+ + S S +N + P+ + ++ +
Sbjct: 329 NPASPNSIIRENNQVEDESFNGRQGSAIWNALISTTQPNSGLHTEASTAPSSTIPADPLK 388
Query: 1726 NYSPTSSSYSPTS 1738
N + T+S +
Sbjct: 389 NAAQTNSGTRNNN 401
Score = 38.8 bits (90), Expect = 0.023
Identities = 33/171 (19%), Positives = 48/171 (28%), Gaps = 9/171 (5%)
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
S S PS P S T + S T P + P++P YS S
Sbjct: 243 SSHSTLDLPSDFISDSGFPNQSST-SIFPLDSAIIQITPP-HLPNNPPQENRHELYSNDS 300
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS 1618
S T P P+ SP + S + S + S S
Sbjct: 301 SMVSETPPP--KNLPNGSPNQSPLNNLSRGNPASPNSIIRENNQVEDESFNGRQGSA--- 355
Query: 1619 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1669
A T+ S + T+PS + + + + S T
Sbjct: 356 -IWNALISTTQPNSGLHTE-ASTAPSSTIPADPLKNAAQTNSGTRNNNFSD 404
Score = 35.8 bits (82), Expect = 0.25
Identities = 34/174 (19%), Positives = 49/174 (28%), Gaps = 11/174 (6%)
Query: 1463 PGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPT 1522
P P L S T S ++ F SS P +P + P +P
Sbjct: 233 PAKFMIPELHSSHSTLDLPSDFISDSGFPNQSSTSIFPLDSAIIQITPPHLPNNPPQENR 292
Query: 1523 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1582
YS S S T P + P SP + S + S + S +
Sbjct: 293 HELYSNDSSMVSETPPP--KNLPNGSPNQSPLNNLSRGNPASPNSIIRENNQVEDESFNG 350
Query: 1583 SPTSP----SYSPTSPSYS-----PTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1627
S S T P+ T+PS + + + S T
Sbjct: 351 RQGSAIWNALISTTQPNSGLHTEASTAPSSTIPADPLKNAAQTNSGTRNNNFSD 404
Score = 32.7 bits (74), Expect = 1.8
Identities = 39/197 (19%), Positives = 67/197 (34%), Gaps = 6/197 (3%)
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
S ++ T+P S S SP S + S S +S S+S +P
Sbjct: 129 SENGLVHTFTTPKLESVVKSLEGKSLIQSPCSNAPS-DSSEEPSSSASFSVDPNDNNPMG 187
Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSA-KYSPSLAYSPSS---PRLSPASPYSPTSPN 1726
SP + P +P + Y S+ K P++ +S ++ P P +S +
Sbjct: 188 SFQHNGSPQTNFI-PLQNPQTQQYQQHSSRKDHPTVPHSNTNNGRPPAKFMIPELHSSHS 246
Query: 1727 YSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPS 1786
S + S + SS + P P + PQ + YS + S +
Sbjct: 247 TLDLPSDFISDSGFPNQSSTSIFPLDSAIIQITPPHLPNNPPQENRHELYSNDSSMVSET 306
Query: 1787 STSQYTPQTNRDDSTTK 1803
+ P + + S
Sbjct: 307 PPPKNLPNGSPNQSPLN 323
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 45.6 bits (108), Expect = 2e-04
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
P PT+ + SP P+ +P++ + + + P P +P P P P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423
Query: 1616 AYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
P S + P Y+P +P
Sbjct: 424 T--PESAPKLTRAAIPVDEKPKYTPPAP 449
Score = 45.2 bits (107), Expect = 3e-04
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
P PT+ + SP P+ +P++ + + + P P +P P P P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
P S + P Y+P +P
Sbjct: 424 T--PESAPKLTRAAIPVDEKPKYTPPAP 449
Score = 44.8 bits (106), Expect = 4e-04
Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
PT+ SP PT +PS + A + P P + +P P +P T
Sbjct: 370 KPTAAAPSPVRPTPAPS----TRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTP 425
Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
S + + P P Y+P +P
Sbjct: 426 ESAPKLTRAAIP-----VDEKPKYTPPAP 449
Score = 44.4 bits (105), Expect = 5e-04
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 2/82 (2%)
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
PT+ A SP P+ +P++ + + + P P +P P P P +P S
Sbjct: 370 KPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH--TPES 427
Query: 1608 PAYSPTSPAYSPTSPAYSPTSP 1629
+ P Y+P +P
Sbjct: 428 APKLTRAAIPVDEKPKYTPPAP 449
Score = 44.0 bits (104), Expect = 7e-04
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
P PT+ A SP P +P++ + + + P P +P P P P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423
Query: 1665 AYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
P S + P Y+P +P
Sbjct: 424 T--PESAPKLTRAAIPVDEKPKYTPPAP 449
Score = 43.3 bits (102), Expect = 0.001
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 2/85 (2%)
Query: 1612 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
P PT+ A SP P+ +P++ + + + P P +P P P P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423
Query: 1672 GYSPTSPSYSPTSPTYSPTSPSYNP 1696
+P S + P Y P
Sbjct: 424 --TPESAPKLTRAAIPVDEKPKYTP 446
Score = 42.9 bits (101), Expect = 0.002
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSP 1654
P PT+ A SP P +P++ + + + P P + +P P +P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423
Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
T S + A P P Y+P +P
Sbjct: 424 TPESAPKLTRAAIP-----VDEKPKYTPPAPP 450
Score = 40.6 bits (95), Expect = 0.008
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
P++ SP P +P++ + + P P +P P P P P S
Sbjct: 370 KPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHT--PES 427
Query: 1559 PSYSPTSPSYSPTSPSYSPTSP 1580
+ P Y+P +P
Sbjct: 428 APKLTRAAIPVDEKPKYTPPAP 449
Score = 39.8 bits (93), Expect = 0.012
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 1584 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
P PT+ + SP P+ +P++ P + A + P P + +P P +P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTR---PKAAAAANIPPK-EPVRETATPPPVPPRPVAP 419
Query: 1644 SYSPTSPSYSPTSP---SYSPTSPAYSPTSP 1671
T S +P P Y+P +P
Sbjct: 420 PVPHTPES-APKLTRAAIPVDEKPKYTPPAP 449
Score = 39.8 bits (93), Expect = 0.013
Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 1654 PTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
P PT+ A SP P +P++ + + P P + P + P +P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETAT---PPPVPPRPVAPP 420
Query: 1714 LSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGN 1760
+ +P ++ P Y+P +P A G
Sbjct: 421 VPHTPESAPK----LTRAAIPVDEKPKYTPPAPPKEEEKALIADGDV 463
Score = 37.9 bits (88), Expect = 0.049
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
P PT+ + SP P +P++ A + P P + +P P +P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTR----PKAAAAANIPPKEPVRETATPPPVPPRPVAP 419
Query: 1651 SYSPTSPSYSPTSP---AYSPTSPGYSPTSP 1678
T S +P P Y+P +P
Sbjct: 420 PVPHTPES-APKLTRAAIPVDEKPKYTPPAP 449
Score = 36.3 bits (84), Expect = 0.15
Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 3/98 (3%)
Query: 1476 VTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSP 1535
V +A P PT+ SP P +PS+ + + P P +P P
Sbjct: 355 VIEALLVPVPAPQPAKPTA-AAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP 413
Query: 1536 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP 1573
P P +P S + P Y+P +P
Sbjct: 414 PRPVAPPVPH--TPESAPKLTRAAIPVDEKPKYTPPAP 449
Score = 35.6 bits (82), Expect = 0.28
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 14/97 (14%)
Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
P PT+ + SP P+ +P++ P + A + P P + +P P +P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTR---PKAAAAANI-PPKEPVRETATPPPVPPRPVAP 419
Query: 1693 SYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSP 1729
S+P+L+ A+ P Y+P
Sbjct: 420 PVPHT----------PESAPKLTRAAIPVDEKPKYTP 446
Score = 34.0 bits (78), Expect = 0.74
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 22/101 (21%)
Query: 1674 SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSS 1733
PT+ + SP PT +P++ P++A + P P A+P P +
Sbjct: 370 KPTAAAPSPVRPTPAPSTR---PKAA---AAANIPPKEPVRETATPPPVPPR---PVAPP 420
Query: 1734 YSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
T S + P P+Y+P A
Sbjct: 421 VPHTPESAPKLTRAAIPV-------------DEKPKYTPPA 448
>gnl|CDD|227709 COG5422, ROM1, RhoGEF, Guanine nucleotide exchange factor for
Rho/Rac/Cdc42-like GTPases [Signal transduction
mechanisms].
Length = 1175
Score = 45.3 bits (107), Expect = 4e-04
Identities = 45/212 (21%), Positives = 70/212 (33%), Gaps = 22/212 (10%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
SP S+ + + A S TS S +SP S S S + S T
Sbjct: 79 SPKLFQRRNSAGPITHSPSATSSTSSLNSNDGDQFSPASDSL---SFNPSSTQSRKDSGP 135
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1653
SP +P P+ S + ++ + S++ + S S
Sbjct: 136 GDGSPVQKRKNPLLPSSSTHG----------THPPIVFTDNNGSHAGAPNARSR-KEIPS 184
Query: 1654 PTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
S S SP + ++ P+ S S + P S ++ R
Sbjct: 185 LGSQSMQLPSPHFRQKFSSSDTSNGFSYPSIRKNSRHSSNSMPSFPHSSTAVLLK----R 240
Query: 1714 LSPASPYSPTSPNYSPTSSSYSPTSPSYSPSS 1745
S +S S S N +P+SS S + S SS
Sbjct: 241 HSGSSGASLISSNITPSSS----NSEAMSTSS 268
Score = 41.8 bits (98), Expect = 0.004
Identities = 45/202 (22%), Positives = 73/202 (36%), Gaps = 10/202 (4%)
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
SP S+ + + S TS S +SP S + S + S T
Sbjct: 79 SPKLFQRRNSAGPITHSPSATSSTSSLNSNDGDQFSPASDSLSFNP---SSTQSRKDSGP 135
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS 1618
SP +P PS S T ++ P + + S + +P + S S S +
Sbjct: 136 GDGSPVQKRKNPLLPS-SSTHGTHPPIVFTDNNGSHAGAPNARS---RKEIPSLGSQSMQ 191
Query: 1619 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1678
SP + S ++ P+ S S + P+ P +S T+ S G S S
Sbjct: 192 LPSPHFRQKFSSSDTSNGFSYPSIRKNSRHSSNSMPSFP-HSSTAVLLKRHS-GSSGASL 249
Query: 1679 SYSPTSPTYSPTSPSYNPQSAK 1700
S +P+ S S + + S +
Sbjct: 250 ISSNITPSSS-NSEAMSTSSKR 270
Score = 41.4 bits (97), Expect = 0.005
Identities = 43/203 (21%), Positives = 69/203 (33%), Gaps = 10/203 (4%)
Query: 1520 SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSY----SPTSPSYSPTSPSY 1575
SP ++ + + S +S S +SP S S S T
Sbjct: 79 SPKLFQRRNSAGPITHSPSATSSTSSLNSNDGDQFSPASDSLSFNPSSTQSRKDSGPGDG 138
Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
SP +P PS S T ++ P + + S A +P + + S S S S
Sbjct: 139 SPVQKRKNPLLPS-SSTHGTHPPIVFTDNNGSHAGAPNARS---RKEIPSLGSQSMQLPS 194
Query: 1636 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP-GYSPTSPSYSPTSPTYSPTSPSY 1694
P + S ++ P+ S S P+ P + S S S +
Sbjct: 195 PHFRQKFSSSDTSNGFSYPSIRKNSRHSSNSMPSFPHSSTAVLLKRHSGSSGASLISSNI 254
Query: 1695 NPQSAKYSPSLAYSPSSPRLSPA 1717
P S+ S +++ S P + PA
Sbjct: 255 TPSSSN-SEAMSTSSKRPYIYPA 276
Score = 40.6 bits (95), Expect = 0.010
Identities = 40/193 (20%), Positives = 54/193 (27%), Gaps = 20/193 (10%)
Query: 1566 PSYSPTSPSYSPTSPSYSPTS---PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
P S S P S + + S S ++ + +
Sbjct: 20 PRKSDAFVSKQLLPPRRLQRKLNPISIRNGADNDIINSESK----ESFGKYALGHQ-IFS 74
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
++S +SP S P + S S TS + S S SPA S S T
Sbjct: 75 SFS-SSPKLFQRRNSAGPITHSPSATSSTSSLNSNDGDQFSPASDSLSFNPSSTQSRKDS 133
Query: 1683 TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYS 1742
SP NP PSS P T N S + + S
Sbjct: 134 GPGDGSPVQKRKNP----------LLPSSSTHGTHPPIVFTDNNGSHAGAPNA-RSRKEI 182
Query: 1743 PSSPTYSPSSPYN 1755
PS + S P
Sbjct: 183 PSLGSQSMQLPSP 195
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 44.9 bits (106), Expect = 4e-04
Identities = 34/225 (15%), Positives = 74/225 (32%), Gaps = 7/225 (3%)
Query: 1529 TSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1588
P + +P P+ +P + A +P +P +P + + + +P+ +P
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPE 431
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
+ S P +P +PA +PA +P + A + + + + + +
Sbjct: 432 ALAAARQASARGPGGAP-APA---PAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAA 487
Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYS 1708
+P+ + P P SP + + + S P+ +
Sbjct: 488 APAPADDDPPPWEELPP-EFASPAPAQPDAAPAGWV-AESIPDPATADPDDAFETLAPAP 545
Query: 1709 PSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
++P A+ P P +S S + P + P
Sbjct: 546 AAAPAPRAAAATEPVVAP-RPPRASASGLPDMFDGDWPALAARLP 589
Score = 38.3 bits (89), Expect = 0.038
Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 5/131 (3%)
Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRL 1714
P+ + +P P +P + + +P +P P +P+ P +A + ++A +P+ R
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAP---PAAPAAAPAAAAAARAVAAAPA--RR 426
Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA 1774
SPA + S +P ++P + + ++P + A
Sbjct: 427 SPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPA 486
Query: 1775 GYSPSAPGYSP 1785
A P
Sbjct: 487 AAPAPADDDPP 497
Score = 37.9 bits (88), Expect = 0.053
Identities = 25/181 (13%), Positives = 58/181 (32%), Gaps = 17/181 (9%)
Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
PA + +P P + +P + + +P +P +P +PA + + + +
Sbjct: 372 AGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAP------AAAPAAAAAAR-----AVA 420
Query: 1680 YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
+P SP+ +A S +P +PA +P + + +
Sbjct: 421 AAPARR-----SPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAA 475
Query: 1740 SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDD 1799
+ + + ++P A P + P++ S + + D
Sbjct: 476 AAAAPARAAPAAAPAPADDDPPPWEELPPEF-ASPAPAQPDAAPAGWVAESIPDPATADP 534
Query: 1800 S 1800
Sbjct: 535 D 535
>gnl|CDD|222997 PHA03132, PHA03132, thymidine kinase; Provisional.
Length = 580
Score = 44.8 bits (106), Expect = 4e-04
Identities = 30/171 (17%), Positives = 44/171 (25%), Gaps = 3/171 (1%)
Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS- 1604
S SP S + +P + TS P S TS Y+
Sbjct: 15 DSSDESPEGSRDENFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTV 74
Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
P P + + PA P +P P + S + S SP
Sbjct: 75 PRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASSPRLGADSTSPRFLYQVNFPV 134
Query: 1665 AYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN--PQSAKYSPSLAYSPSSPR 1713
+P S + + P S S Y + + R
Sbjct: 135 ILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTHKR 185
Score = 43.6 bits (103), Expect = 0.001
Identities = 30/166 (18%), Positives = 40/166 (24%), Gaps = 10/166 (6%)
Query: 1496 PGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYS 1555
+ +P TS P S G TS Y+ P P P +
Sbjct: 28 NFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTVPRP---PRGPEQT 84
Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
P P S P +P P + S + S SP Y P
Sbjct: 85 LDKPDSLPASR---ELPPGPTPVPPGGFRGASSPRLGADSTSP-RFLYQVNFPVILAPIG 140
Query: 1616 AYSPTSPAYS---PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
+ +S S S S Y + S
Sbjct: 141 ESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTHKRS 186
Score = 43.6 bits (103), Expect = 0.001
Identities = 32/184 (17%), Positives = 45/184 (24%), Gaps = 6/184 (3%)
Query: 1484 YVGGMAFSPTS-SPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSP 1542
G P + S SP S + +P TS P
Sbjct: 1 GPGKPRGQPGRWNYDSSDESPEGSRDENFDAERDDFLTPLGSTSEATSEDDDDLYPPRET 60
Query: 1543 SSPGYSPTSPAYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1601
S G TS Y+ P P + + P+ P +P P + S +
Sbjct: 61 GSGGGVATSTIYTVPRPPRGPEQTLDKPDSLPASRELPPGPTPVPPGGFRGASSPRLGAD 120
Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYS---PTSPSYSPTSPSYSPTSPSYSPTSPS 1658
S SP Y P + +S S S S Y
Sbjct: 121 STSP-RFLYQVNFPVILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSK 179
Query: 1659 YSPT 1662
+
Sbjct: 180 HKTH 183
Score = 42.8 bits (101), Expect = 0.002
Identities = 33/220 (15%), Positives = 51/220 (23%), Gaps = 10/220 (4%)
Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
S SP S + +P + TS P S TS Y+
Sbjct: 15 DSSDESPEGSRDENFDAERDDFLTPLGSTSEATSEDDDDLYPPRETGSGGGVATSTIYTV 74
Query: 1662 TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS 1721
P P P + P P S P P+ P S +
Sbjct: 75 PRP---PRGPEQTLDKPDSLPASRELPP-GPTPVPPGGFRGASSPRLGADSTSPRFLYQV 130
Query: 1722 PTSPNYSPTSSSYSPTSPSYSPSSPTYSPSS------PYNAGGGNPDYSPSSPQYSPSAG 1775
+P S S + + P S + + S +G
Sbjct: 131 NFPVILAPIGESNSSSEELSEEEEHSRPPPSESLKVKNGGKVYPKGFSKHKTHKRSEFSG 190
Query: 1776 YSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSSR 1815
+ A S Q + K+ + +
Sbjct: 191 LTKKAARKRKGSFVFKPSQLKELSGSLKNLLHLDDSAETD 230
>gnl|CDD|146273 pfam03546, Treacle, Treacher Collins syndrome protein Treacle.
Length = 519
Score = 44.9 bits (105), Expect = 4e-04
Identities = 59/331 (17%), Positives = 104/331 (31%), Gaps = 16/331 (4%)
Query: 1492 PTSSPGYSPSSPGYSPSSPG----YSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
S+P G P +PG + + S S G +PT+ T + S
Sbjct: 57 AASAPAKESPQKGAPPVTPGKAGPAAAQAGEEEAKSSEEESDSEGETPTAATLTTSPAQA 116
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
P S PS + + S + + S S S P +
Sbjct: 117 KPLGKNSQVRPASTVTPGPSGKGANLPCPQKAGSAAVQVGKQEDSESSSEEESDSDGPGA 176
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT--------SPSYSPTSPSYSPTSPSY 1659
PA + +S PA P P + S S +S S +
Sbjct: 177 PAQAKSSGKLLQARPASGPAKGPPQKAGPVATQVKAERGKEDSESSEESSDSEEEAPAAM 236
Query: 1660 SPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
+ + +P + +P +PT + P A SP+ SPA
Sbjct: 237 TAAQAKPALKTPQTKASPRKGTPITPTSAKVPPVRVGTPAPRKAGAVTSPACAS-SPALA 295
Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSA-GYSP 1778
P+ +SS S + + + + G G + S P P G +P
Sbjct: 296 RGTQRPDEDSSSSEESESEEEGTAPATARGQAKS--VGKGLQVKAASVPTKGPLGQGTAP 353
Query: 1779 SAPGYSPSSTSQYTPQTNRDDSTTKDDKNTK 1809
PG + + +Q + D +++++ +++
Sbjct: 354 VPPGKTGPAVAQVKAEVQEDSESSEEESDSE 384
Score = 34.9 bits (79), Expect = 0.48
Identities = 51/283 (18%), Positives = 89/283 (31%), Gaps = 13/283 (4%)
Query: 1506 SPSSPGYSPTS-PGYSPTSPGYSPTSPGYS-PTSPTYSPSSPGYSPTSPAYSPTSPSYSP 1563
S SP S P G P +PG + P + S +P+ +
Sbjct: 49 SGKSPQVKAASAPAKESPQKGAPPVTPGKAGPAAAQAGEEEAKSSEEESDSEGETPTAAT 108
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
+ S + P S ++ + P+ + P + ++ +S
Sbjct: 109 LTTSPAQAKPL-GKNSQVRPASTVTPGPSGKGANLPCPQKAGSAAVQVGKQEDSESSSEE 167
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
S + +P S P S P+ P + + + S +S
Sbjct: 168 ESDSDGPGAPAQAKSSGKLLQARPASGPAKGPPQKAGPVATQVKAERGKEDSESSEE--- 224
Query: 1683 TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYS 1742
+S + + AK + + +SPR +P +PTS P + +
Sbjct: 225 SSDSEEEAPAAMTAAQAKPALKTPQTKASPR--KGTPITPTSAKVPPVRVGTPAPRKAGA 282
Query: 1743 PSSPTYSPSSPYNAGGG---NPDYSPSSPQYSPSAGYSPSAPG 1782
+SP SSP A G + D S S S G +P+
Sbjct: 283 VTSPA-CASSPALARGTQRPDEDSSSSEESESEEEGTAPATAR 324
>gnl|CDD|218107 pfam04484, DUF566, Family of unknown function (DUF566). Family of
related proteins that is plant specific.
Length = 313
Score = 44.2 bits (104), Expect = 4e-04
Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 1/118 (0%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
S S S S + + S +S +P+ P+S TS S S S S
Sbjct: 12 GDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTS-SSSSFGLSKQRPS 70
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
S + SP++ A S A + TS S SP+ + +S S PS
Sbjct: 71 SLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSDLSSGNGPS 128
Score = 42.6 bits (100), Expect = 0.001
Identities = 30/137 (21%), Positives = 48/137 (35%)
Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
S S TS S S S ++ A S +P SP S + + S +S
Sbjct: 2 AASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSS 61
Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
S + S S S SP+ + + G T+ + +SP+ S + S +
Sbjct: 62 FGLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSDL 121
Query: 1697 QSAKYSPSLAYSPSSPR 1713
S L++ R
Sbjct: 122 SSGNGPSVLSFMADVKR 138
Score = 41.9 bits (98), Expect = 0.002
Identities = 33/143 (23%), Positives = 49/143 (34%), Gaps = 15/143 (10%)
Query: 1488 MAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
A S +S +S S S S + S +S +P P+S P+
Sbjct: 1 RAASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSS---PARNTS 57
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
S +S S PS S S S SPS + + S + + TS
Sbjct: 58 SSSSFGLSKQRPSSLSRGRLSSR--------FVSPSRGSPSAAASLNG----SLATASTS 105
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPS 1630
+ SP+ + +S S PS
Sbjct: 106 GSSSPSRSRRTTSSDLSSGNGPS 128
Score = 41.9 bits (98), Expect = 0.002
Identities = 29/118 (24%), Positives = 42/118 (35%), Gaps = 1/118 (0%)
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
S S + S S S +S +P+ P+S TS S S S S
Sbjct: 12 GDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTS-SSSSFGLSKQRPS 70
Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
S + SP++ A S A + TS + SP+ + +S S PS
Sbjct: 71 SLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSDLSSGNGPS 128
Score = 41.1 bits (96), Expect = 0.004
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
+ S S + + SP S S S S+ TS S P + + PS SP S +S
Sbjct: 3 ASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSSF 62
Query: 1616 AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPAYSPTSPG 1672
S P+ S S S SPS + + + + TS S SP+ + +S
Sbjct: 63 GLSKQRPSSLSRGRLSSR-FVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSDL 121
Query: 1673 YSPTSPS 1679
S PS
Sbjct: 122 SSGNGPS 128
Score = 41.1 bits (96), Expect = 0.004
Identities = 33/132 (25%), Positives = 47/132 (35%), Gaps = 7/132 (5%)
Query: 1506 SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 1565
S SS S S S + S + + S SS +PA P+S TS
Sbjct: 4 SVSSGSTS------GDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTS 57
Query: 1566 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYS 1625
S S S S S + SP++ + S A + TS + SP+ +
Sbjct: 58 -SSSSFGLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRT 116
Query: 1626 PTSPSYSPTSPS 1637
+S S PS
Sbjct: 117 TSSDLSSGNGPS 128
Score = 39.9 bits (93), Expect = 0.009
Identities = 36/131 (27%), Positives = 50/131 (38%), Gaps = 5/131 (3%)
Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
+ S S + + SP S S S S+ TS S P + + P+ SP S +S
Sbjct: 3 ASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSSF 62
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
S PS S S S SPS + + S A + TS SP+ +
Sbjct: 63 GLSKQRPSSLSRGRLSSR-FVSPSRGSPSAAASLNG----SLATASTSGSSSPSRSRRTT 117
Query: 1683 TSPTYSPTSPS 1693
+S S PS
Sbjct: 118 SSDLSSGNGPS 128
Score = 39.2 bits (91), Expect = 0.015
Identities = 36/128 (28%), Positives = 51/128 (39%), Gaps = 6/128 (4%)
Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
S SS S A SP S S S S+ TS S P + + PS SP + S +S
Sbjct: 4 SVSSGSTS--GDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSS 61
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSP 1657
S P+ S + S SPS + + + + TS S SP+ + +S
Sbjct: 62 FGLSKQRPSSLSRGRLSSR-FVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSD 120
Query: 1658 SYSPTSPA 1665
S P+
Sbjct: 121 LSSGNGPS 128
Score = 38.4 bits (89), Expect = 0.025
Identities = 35/127 (27%), Positives = 48/127 (37%), Gaps = 2/127 (1%)
Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
S S TS S S S ++ A S +P SP S + S S
Sbjct: 2 AASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTS--SS 59
Query: 1693 SYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSS 1752
S S + SL+ S R S SP++ S + + TS S SPS + SS
Sbjct: 60 SSFGLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSS 119
Query: 1753 PYNAGGG 1759
++G G
Sbjct: 120 DLSSGNG 126
Score = 36.8 bits (85), Expect = 0.079
Identities = 31/132 (23%), Positives = 40/132 (30%), Gaps = 11/132 (8%)
Query: 1661 PTSPAYSPTSPGYSP---TSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
S + TS S +S +S + S +A SP PSS
Sbjct: 2 AASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASP-----PSSSPARNT 56
Query: 1718 SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGG---NPDYSPSSPQYSPSA 1774
S S + SS S S SPS+ + G SSP S
Sbjct: 57 SSSSSFGLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRT 116
Query: 1775 GYSPSAPGYSPS 1786
S + G PS
Sbjct: 117 TSSDLSSGNGPS 128
Score = 35.3 bits (81), Expect = 0.23
Identities = 31/127 (24%), Positives = 45/127 (35%), Gaps = 5/127 (3%)
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPTS 1656
S S TS S S + S + S S +S +P+ P+S + +S
Sbjct: 2 AASVSSGSTS---GDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSS 58
Query: 1657 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSP 1716
S S + +S SP S + S N A S S + SPS R +
Sbjct: 59 SSSFGLSKQRPSSLSRGRLSSRFVSP-SRGSPSAAASLNGSLATASTSGSSSPSRSRRTT 117
Query: 1717 ASPYSPT 1723
+S S
Sbjct: 118 SSDLSSG 124
Score = 33.8 bits (77), Expect = 0.82
Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 4/127 (3%)
Query: 1689 PTSPSYNPQSAKYSPSLAYSP---SSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSS 1745
S S S S + S SS LS ++ P N + S SP + S SS
Sbjct: 2 AASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTSSSSS 61
Query: 1746 PTYSPSSPYNAGGGN-PDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKD 1804
S P + G S + SPSA S + + S++ +P +R +++
Sbjct: 62 FGLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTTSSDL 121
Query: 1805 DKNTKGD 1811
Sbjct: 122 SSGNGPS 128
Score = 33.0 bits (75), Expect = 1.4
Identities = 28/140 (20%), Positives = 45/140 (32%), Gaps = 13/140 (9%)
Query: 1612 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
S + TS S S S ++ + S +P SP S +
Sbjct: 2 AASVSSGSTSGDASSPRSSSRRRLSSSFLSTSASSRPRRLNAPASPPSSSPA-------- 53
Query: 1672 GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS 1731
+ S +S S PS + S ++ S SP + + S + + S +S
Sbjct: 54 -----RNTSSSSSFGLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSS 108
Query: 1732 SSYSPTSPSYSPSSPTYSPS 1751
S + S S PS
Sbjct: 109 SPSRSRRTTSSDLSSGNGPS 128
Score = 32.2 bits (73), Expect = 2.5
Identities = 30/125 (24%), Positives = 37/125 (29%), Gaps = 13/125 (10%)
Query: 1675 PTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLS-----PASPYS--PTSPNY 1727
S S TS S S S + S S S+ PASP S P
Sbjct: 2 AASVSSGSTSGDASSPRSS----SRRRLSSSFLSTSASSRPRRLNAPASPPSSSPARNTS 57
Query: 1728 SPTSSSYSPTSPS--YSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSP 1785
S +S S PS + S + + S S S SPS +
Sbjct: 58 SSSSFGLSKQRPSSLSRGRLSSRFVSPSRGSPSAAASLNGSLATASTSGSSSPSRSRRTT 117
Query: 1786 SSTSQ 1790
SS
Sbjct: 118 SSDLS 122
>gnl|CDD|219916 pfam08580, KAR9, Yeast cortical protein KAR9. The KAR9 protein in
Saccharomyces cerevisiae is a cytoskeletal protein
required for karyogamy, correct positioning of the
mitotic spindle and for orientation of cytoplasmic
microtubules. KAR9 localises at the shmoo tip in mating
cells and at the tip of the growing bud in anaphase.
Length = 626
Score = 44.5 bits (105), Expect = 5e-04
Identities = 51/258 (19%), Positives = 71/258 (27%), Gaps = 24/258 (9%)
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
S S + YS S S S S + P S S S T + S A
Sbjct: 376 IRDSISVSGSDYSNPGSSIDTPSSSPSSSVIMTPPDSGPGSNVSSRRVGTPGSKSDRVGA 435
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
+ PT S P + + S TSP+ S P
Sbjct: 436 VLLRRMNIKPTLAS-IPDEKPSNISVFEDSETSPNSSTLLR---------DPPPKKCGEE 485
Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
S P +P +N S SP ++ +P P S S + S + SP
Sbjct: 486 SGH-LPNNPFFNKLKLTLSSIPPLSPRQSIITLPTPSRPASRISSLSLRLGSYSGSIVSP 544
Query: 1744 SSPTYSPSSPYNAG-----------GGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYT 1792
S AG G P P+ + + S S+S +
Sbjct: 545 PPYPTLVSRKGAAGLSFNRSVSDIEGERIGRYNLLPTRIPALPFKAESTTSSRRSSSLPS 604
Query: 1793 PQT--NRDDSTTKDDKNT 1808
P S + D
Sbjct: 605 PTGVIGFPGSVPRFDHEN 622
Score = 32.9 bits (75), Expect = 2.0
Identities = 32/181 (17%), Positives = 48/181 (26%), Gaps = 10/181 (5%)
Query: 1474 SPVTDAQFSPYVGGMAF-SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPG 1532
S + + V + SP SS P G+ P +P ++ S P
Sbjct: 449 SIPDEKPSNISVFEDSETSPNSSTLLRDPPPKKCGEESGHLPNNPFFNKLKLTLSSIPPL 508
Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-- 1590
S P S S + S + SP + + S + S
Sbjct: 509 SPRQSI--ITLPTPSRPASRISSLSLRLGSYSGSIVSPPPYPTLVSRKGAAGLSFNRSVS 566
Query: 1591 ---PTSPSYSPTSPSYSPTSP-AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1646
P+ P P T+ + +S SPT P S
Sbjct: 567 DIEGERIGRYNLLPTRIPALPFKAESTTSSRRSSSLP-SPTGVIGFPGSVPRFDHENLLP 625
Query: 1647 P 1647
P
Sbjct: 626 P 626
>gnl|CDD|177464 PHA02682, PHA02682, ORF080 virion core protein; Provisional.
Length = 280
Score = 43.7 bits (102), Expect = 5e-04
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 10/124 (8%)
Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
G SP +P SP + +P P+ +P +P+ + T P+ +P P P+ +PT P
Sbjct: 78 GQSPLAP--SPACAAPAPACPACAPAAPAPAVTCPAPAPACP------PATAPTCPP-PA 128
Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
PA + +PA P++ P P +P +P+ P P Y S T+P
Sbjct: 129 VCPAPARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAP 188
Query: 1665 AYSP 1668
A SP
Sbjct: 189 AASP 192
Score = 42.9 bits (100), Expect = 8e-04
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1591
G SP +P+ P+ +P PA +P +P+ + T P+ +P P P+ +PT P
Sbjct: 78 GQSPLAPS--PACAAPAPACPACAPAAPAPAVTCPAPAPACP------PATAPTCPP-PA 128
Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPT-SPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
P+ + +P+ P++ P P +P +PA P P Y S T+P
Sbjct: 129 VCPAPARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAP 188
Query: 1651 SYSPTSPSYSP 1661
+ SP P
Sbjct: 189 AASPVLEPRIP 199
Score = 42.2 bits (98), Expect = 0.002
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 10/131 (7%)
Query: 1518 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1577
G SP +P SP +P P +P++P + T PA +P P P+ +PT P
Sbjct: 78 GQSPLAP--SPACAAPAPACPACAPAAPAPAVTCPAPAPACP------PATAPTCPP-PA 128
Query: 1578 TSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
P+ + +P+ P++ P P +P +PA P P Y S T+P
Sbjct: 129 VCPAPARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAP 188
Query: 1637 SYSPTSPSYSP 1647
+ SP P
Sbjct: 189 AASPVLEPRIP 199
Score = 41.8 bits (97), Expect = 0.002
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
SP +PS P + +P P+ +P +P+ + T P+ +P P + + PA + +
Sbjct: 80 SPLAPS--PACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPA 137
Query: 1622 PAYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1680
PA P++ P P +P +P+ P P Y S T+P SP
Sbjct: 138 PACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEPR 197
Query: 1681 SP 1682
P
Sbjct: 198 IP 199
Score = 41.0 bits (95), Expect = 0.004
Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 10/130 (7%)
Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
SP +PS P + +P P+ +P +PA + T P +P P P +PT P
Sbjct: 80 SPLAPS--PACAAPAPACPACAPAAPAPAVTCPAPAPACP------PATAPTCPPPAVCP 131
Query: 1699 AKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGG 1758
A P+ A PS+ + PA P P + P P P S + A
Sbjct: 132 APARPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLP--PPDYPAASCPTIETAPA 189
Query: 1759 GNPDYSPSSP 1768
+P P P
Sbjct: 190 ASPVLEPRIP 199
Score = 39.8 bits (92), Expect = 0.009
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 5/122 (4%)
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 1677
SP +P SP + +P P+ +P +P+ + T P+ +P P + + P + +
Sbjct: 80 SPLAP--SPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPA 137
Query: 1678 PSYSPTSPTYSPTSPSYNPQSAKYS-PSLAYSPSSPRLSPAS--PYSPTSPNYSPTSSSY 1734
P+ P++ P P P+ A + P ++ P PA+ P T+P SP
Sbjct: 138 PACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEPR 197
Query: 1735 SP 1736
P
Sbjct: 198 IP 199
Score = 39.1 bits (90), Expect = 0.014
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 20/152 (13%)
Query: 1653 SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSP 1712
SP +PS P A +P P +P +P+ + T P +P P P +A P A P+
Sbjct: 80 SPLAPS--PACAAPAPACPACAPAAPAPAVTCPAPAPACP---PATAPTCPPPAVCPAPA 134
Query: 1713 RLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
R +PA P P++ P P +P + + PDY +S P
Sbjct: 135 RPAPACP---------PSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAAS---CP 182
Query: 1773 SAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKD 1804
+ +P+A SP + + D+ KD
Sbjct: 183 TIETAPAA---SPVLEPRIPDKIIDADNDDKD 211
Score = 37.9 bits (87), Expect = 0.032
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 1584 PTSPSY---SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT-SPAYSPTSPSYSPTSPSYS 1639
P+ S SP + +P P+ +P +PA + T PA +P PA +PT P P+ +
Sbjct: 76 PSGQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPP-PAVCPAPA 134
Query: 1640 PTSPSYSPTSPSYSPTSPSYSPT-SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
+P+ P++ P P +P +PA P P Y S T+P+ +P
Sbjct: 135 RPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASP 192
Score = 37.9 bits (87), Expect = 0.035
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
SP+ +P+ P +P +P + T P +P P T+PT P + +P PA P
Sbjct: 85 SPACAAPAPACPACAPAAPAPAVTCPAPAPACP--PATAPTCPPPAVCPAPARPA--PAC 140
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1612
P + P +P P+ P +P+ P P Y S T+PA SP
Sbjct: 141 PPSTRQCPP-APPLPTPKP-APAAKPIFLHNQLPPPDYPAASCPTIETAPAASP 192
Score = 37.9 bits (87), Expect = 0.041
Identities = 40/131 (30%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
SP +PS P + +P PA +P +PA + T PA +P P T+P+ P + +P
Sbjct: 80 SPLAPS--PACAAPAPACPACAPAAPAPAVTCPAPAPACPP--ATAPTCPPPAVCPAPAR 135
Query: 1650 PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSP 1709
P+ PS PA P P P +P+ P P Y S P++ +P
Sbjct: 136 PA-PACPPSTRQCPPA--PPLPTPKP-APAAKPIFLHNQLPPPDYPAASC---PTIETAP 188
Query: 1710 -SSPRLSPASP 1719
+SP L P P
Sbjct: 189 AASPVLEPRIP 199
Score = 36.8 bits (84), Expect = 0.083
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 6/118 (5%)
Query: 1570 PTSPSY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPAYSPTSPAYSPTSPAYS 1625
P+ S SP + +P P+ +P +P+ + T P+ +P PA +PT P PA +
Sbjct: 76 PSGQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPP-PAVCPAPA 134
Query: 1626 PTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
+P+ P++ P P +P +P+ P P Y S T+P+ SP
Sbjct: 135 RPAPACPPSTRQCPPAPPLPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASP 192
Score = 31.0 bits (69), Expect = 5.5
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 1/107 (0%)
Query: 1493 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP 1552
+ P +P++P + + P +P P + + P + +P PS+ P P
Sbjct: 93 PACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPP 152
Query: 1553 AYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1598
+P +P+ P P Y S T+P+ SP P
Sbjct: 153 LPTPKPAPAAKPIFLHNQLPPPDYPAASCPTIETAPAASPVLEPRIP 199
>gnl|CDD|165099 PHA02732, PHA02732, hypothetical protein; Provisional.
Length = 1467
Score = 44.7 bits (105), Expect = 5e-04
Identities = 58/303 (19%), Positives = 101/303 (33%), Gaps = 9/303 (2%)
Query: 1460 MMSPGYLFSPNLRLSPVTDAQF-SPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPG 1518
+SP Y+F + S V SPY + TS+ + + P GY G
Sbjct: 1072 FVSPSYIFLNSWASSYVAPGFLGSPYALPYFMNQTSALVGNTALPKGLNVFSGYMFG-AG 1130
Query: 1519 YSPTSPGYSPTSPGYSPTSPTYSPS-SPGYSPTSPAYSPTSPSYSPTSPSY-SPTSPSYS 1576
++ Y ++P + +P S ++ S +S T+ + + +P S
Sbjct: 1131 TVASAFLYMNSTPQSPVLALLLAPYISYKFNALSLGFSITADAAIFSLFGIPAPQLLSSY 1190
Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
+ S P ++ P S + + T A A S A +PT P S +S
Sbjct: 1191 IPTGSVLYQDPIFTYIPPGIIGMSGTNTFTFKAAQLQLSAASSPPAATTPTPPPSSSSSS 1250
Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSP--TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSY 1694
S S S + ++ + PA S G P + + + +
Sbjct: 1251 SAQSISTSPGQIQIVLNGSTTIHINFLFFPALSTPKIGQILAMPIVNSSG-AFISLYVNS 1309
Query: 1695 NPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPY 1754
SA ++ ++ Y S+ + P P + S S T+ S
Sbjct: 1310 A-ISANFNVTIEYVFSNGTVIKRFTDEPGQIFPLPLINGDEEVIISVENESTTF-NISAN 1367
Query: 1755 NAG 1757
N G
Sbjct: 1368 NLG 1370
Score = 35.1 bits (80), Expect = 0.52
Identities = 34/207 (16%), Positives = 61/207 (29%), Gaps = 16/207 (7%)
Query: 1574 SYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS---- 1628
+ S ++ SPSY S + S +P + + A S +
Sbjct: 1062 AASQGPSPFTFVSPSYIFLNSWASSYVAPGFLGSPYALPYFMNQTSALVGNTALPKGLNV 1121
Query: 1629 -PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPAYSPTSPGYSPTSP----SYSP 1682
Y ++ Y ++P + +P S ++ S G+S T+ S
Sbjct: 1122 FSGYMFG-AGTVASAFLYMNSTPQSPVLALLLAPYISYKFNALSLGFSITADAAIFSLFG 1180
Query: 1683 TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYS 1742
+S P Y P + + S S +
Sbjct: 1181 IPAPQLLSSYIPTGSVLYQDPIFTYIPPGI----IGMSGTNTFTFKAAQLQLSAASSPPA 1236
Query: 1743 PSSPTYSPSSPYNAGGGNPDYSPSSPQ 1769
++PT PSS ++ + SP Q
Sbjct: 1237 ATTPTPPPSSSSSSSAQSISTSPGQIQ 1263
Score = 31.3 bits (70), Expect = 6.4
Identities = 40/189 (21%), Positives = 66/189 (34%), Gaps = 13/189 (6%)
Query: 1616 AYSPTSPAYSPTSPSYS-PTSPSYSPTSPSY--SPTSPSYSPTSPSY---SPTSPAYSPT 1669
A S ++ SPSY S + S +P + SP + Y S + P
Sbjct: 1062 AASQGPSPFTFVSPSYIFLNSWASSYVAPGFLGSPYALPYFMNQTSALVGNTALPKGLNV 1121
Query: 1670 SPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLS-----PASPYSPTS 1724
GY ++ Y ++P + +P ++Y ++ L A+ +S
Sbjct: 1122 FSGYMFG-AGTVASAFLYMNSTPQSPVLALLLAPYISYKFNALSLGFSITADAAIFSLFG 1180
Query: 1725 PNYSPTSSSYSPT-SPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGY 1783
SSY PT S Y TY P G N ++ +A P+A
Sbjct: 1181 IPAPQLLSSYIPTGSVLYQDPIFTYIPPGIIGMSGTNTFTFKAAQLQLSAASSPPAATTP 1240
Query: 1784 SPSSTSQYT 1792
+P +S +
Sbjct: 1241 TPPPSSSSS 1249
>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183). This
family consists of several eukaryotic proteins of around
360 residues in length. The function of this family is
unknown.
Length = 317
Score = 43.9 bits (104), Expect = 5e-04
Identities = 36/129 (27%), Positives = 42/129 (32%), Gaps = 27/129 (20%)
Query: 1486 GGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP 1545
GG G P PG+ S P PG P+S G T P
Sbjct: 200 GGGGGGGGGGSGPGPPPPGFKSSFPPPYG--PGAGPSSGY------GSGGTRSGQGGWGP 251
Query: 1546 GY--------------SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1591
G+ S SY SPSYSP+S S S +S S S T
Sbjct: 252 GFWTGLGAGGALGYLFGSRRNNNSSYGRSYGSGSPSYSPSSSSNSSSSSSSSSTR----- 306
Query: 1592 TSPSYSPTS 1600
TS + TS
Sbjct: 307 TSSGFGGTS 315
Score = 40.9 bits (96), Expect = 0.004
Identities = 34/141 (24%), Positives = 41/141 (29%), Gaps = 29/141 (20%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGY----SPTSPGYSPTSPGYSPTSPTYSPS--S 1544
G P GY G G P PG+ + P S S
Sbjct: 180 CGGVRGGPRPERAGYGGGGGGGGGGGGGGGSGPGPPPPGFKSSFPPPYGPGAGPSSGYGS 239
Query: 1545 PGYSPTSPAYSP------------------TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
G + P + S SY SPSYSP+S S S +S
Sbjct: 240 GGTRSGQGGWGPGFWTGLGAGGALGYLFGSRRNNNSSYGRSYGSGSPSYSPSSSSNSSSS 299
Query: 1587 PSYSPTSPSYSPTSPSYSPTS 1607
S S T TS + TS
Sbjct: 300 SSSSSTR-----TSSGFGGTS 315
Score = 36.2 bits (84), Expect = 0.12
Identities = 25/108 (23%), Positives = 33/108 (30%), Gaps = 17/108 (15%)
Query: 1656 SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS-----------AKYSPS 1704
P P + + P S + S Y
Sbjct: 209 GSGPGPPPPGFKSSFPPPYGPGAGPSSGYGSGGTRSGQGGWGPGFWTGLGAGGALGY--- 265
Query: 1705 LAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSS 1752
L S + S Y SP+YSP+SSS S +S S SS T + S
Sbjct: 266 LFGSRRNNNSSYGRSYGSGSPSYSPSSSSNSSSSSS---SSSTRTSSG 310
Score = 34.3 bits (79), Expect = 0.52
Identities = 33/140 (23%), Positives = 38/140 (27%), Gaps = 17/140 (12%)
Query: 1542 PSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1601
P GY P P S P PS S
Sbjct: 189 PERAGYGGGGGGGGGGGGGGGS-GPGPPPPGFKSSFPPPYGPGAGPSSGYGSGGTRSGQG 247
Query: 1602 SYSPTSPAYSPTSPA----YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
+ P A + S SY SPSYSP+S S S +S S S T
Sbjct: 248 GWGPGFWTGLGAGGALGYLFGSRRNNNSSYGRSYGSGSPSYSPSSSSNSSSSSSSSSTR- 306
Query: 1658 SYSPTSPAYSPTSPGYSPTS 1677
TS G+ TS
Sbjct: 307 -----------TSSGFGGTS 315
Score = 33.9 bits (78), Expect = 0.79
Identities = 25/100 (25%), Positives = 29/100 (29%), Gaps = 15/100 (15%)
Query: 1708 SPSSPRLSPASPYSPTSPNYSPTSSSYSP-TSPSYSPSSPTYSPSSPYNAGGG------- 1759
S P P S P Y P + S S + P G G
Sbjct: 208 GGSGPGPPPPGFKSSFPPPYGPGAGPSSGYGSGGTRSGQGGWGPGFWTGLGAGGALGYLF 267
Query: 1760 ----NPDYSPSSPQYSPSAGYSP---SAPGYSPSSTSQYT 1792
N + S S S YSP S S SS+S T
Sbjct: 268 GSRRNNNSSYGRSYGSGSPSYSPSSSSNSSSSSSSSSTRT 307
Score = 31.2 bits (71), Expect = 5.4
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 1485 VGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPT--SPGYSPTS 1537
G F + S S SP YSP+S S +S S T S G+ TS
Sbjct: 262 ALGYLFGSRRNNNSSYGRSYGSG-SPSYSPSSSSNSSSSSSSSSTRTSSGFGGTS 315
>gnl|CDD|219837 pfam08430, Fork_head_N, Forkhead N-terminal region. The region
described in this family is found towards the N-terminus
of various eukaryotic fork head/HNF-3-related
transcription factors (which contain the pfam00250
domain). These proteins play key roles in embryogenesis,
maintenance of differentiated cell states, and
tumorigenesis.
Length = 137
Score = 41.5 bits (97), Expect = 6e-04
Identities = 25/122 (20%), Positives = 36/122 (29%), Gaps = 5/122 (4%)
Query: 1657 PSYSPTSPAYSPTSPG--YSPTS-PSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
Y S +YS S G YS S +Y P + + + S N Y+ A + S
Sbjct: 1 SYYPEASESYSSVSGGMVYSMNSMNTYGPMNTSQGSANSSMNMSG--YAGPGAMNGMSSS 58
Query: 1714 LSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
S S SPS + GG+ + S + S
Sbjct: 59 SMNGMSPGYGGAGSPMGMMGMSSMGTSLSPSGTMGAMGPMPAGSGGSLSPNMSMSRASSQ 118
Query: 1774 AG 1775
Sbjct: 119 NN 120
Score = 38.0 bits (88), Expect = 0.009
Identities = 21/119 (17%), Positives = 32/119 (26%), Gaps = 1/119 (0%)
Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
Y S SYS S + S + P + + S + + + S S
Sbjct: 1 SYYPEASESYSSVSGGMVYSMNSMNTYGPMNTSQGSANSSMNMSGYAGPGAMNGMSSSSM 60
Query: 1682 PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPS 1740
+ S S + SPS + P S + S S S
Sbjct: 61 NGMSPGYGGAGSPMGMMGMSSMGTSLSPSGT-MGAMGPMPAGSGGSLSPNMSMSRASSQ 118
Score = 35.3 bits (81), Expect = 0.086
Identities = 20/121 (16%), Positives = 30/121 (24%), Gaps = 3/121 (2%)
Query: 1545 PGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1604
Y S +YS S + S + P + + S + S + + S S
Sbjct: 1 SYYPEASESYSSVSGGMVYSMNSMNTYGPMNTSQGSANSSMNMSGYAGPGAMNGMSSSSM 60
Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
S S SP+ P S + S S S
Sbjct: 61 NGMSP-GYGGAGSPMGMMGMSSMGTSLSPSGT-MGAMGPM-PAGSGGSLSPNMSMSRASS 117
Query: 1665 A 1665
Sbjct: 118 Q 118
Score = 35.0 bits (80), Expect = 0.10
Identities = 21/120 (17%), Positives = 31/120 (25%), Gaps = 3/120 (2%)
Query: 1566 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYS 1625
Y S SYS S + S + P + + S + + A + S +
Sbjct: 1 SYYPEASESYSSVSGGMVYSMNSMNTYGPMNTSQGSANSSMNMSGYAGPGAMNGMSSSSM 60
Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
S S SP+ P S G + S S S
Sbjct: 61 NGMSP-GYGGAGSPMGMMGMSSMGTSLSPSGT-MGAMGPM-PAGSGGSLSPNMSMSRASS 117
Score = 35.0 bits (80), Expect = 0.10
Identities = 20/121 (16%), Positives = 35/121 (28%), Gaps = 2/121 (1%)
Query: 1580 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS 1639
Y S SYS S + S + P + A S + + + + S S
Sbjct: 1 SYYPEASESYSSVSGGMVYSMNSMNTYGPMNTSQGSANSSMNMSGYAGPGAMNGMSSSSM 60
Query: 1640 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP-GYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
S + SP+ G P+ S S + + + + Q+
Sbjct: 61 NGMSP-GYGGAGSPMGMMGMSSMGTSLSPSGTMGAMGPMPAGSGGSLSPNMSMSRASSQN 119
Query: 1699 A 1699
Sbjct: 120 N 120
Score = 35.0 bits (80), Expect = 0.12
Identities = 21/121 (17%), Positives = 30/121 (24%), Gaps = 3/121 (2%)
Query: 1517 PGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1576
Y S YS S G + + + P + A S + S + + S S
Sbjct: 1 SYYPEASESYSSVSGGMVYSMNSMNTYGPMNTSQGSANSSMNMSGYAGPGAMNGMSSSSM 60
Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
S S SP+ P S + S S S
Sbjct: 61 NGMSP-GYGGAGSPMGMMGMSSMGTSLSPSGT-MGAMGPM-PAGSGGSLSPNMSMSRASS 117
Query: 1637 S 1637
Sbjct: 118 Q 118
Score = 34.6 bits (79), Expect = 0.15
Identities = 19/105 (18%), Positives = 32/105 (30%)
Query: 1685 PTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPS 1744
Y S SY+ S S+ + ++ + + +S N S + + S S
Sbjct: 1 SYYPEASESYSSVSGGMVYSMNSMNTYGPMNTSQGSANSSMNMSGYAGPGAMNGMSSSSM 60
Query: 1745 SPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTS 1789
+ + G S SPS P + S S
Sbjct: 61 NGMSPGYGGAGSPMGMMGMSSMGTSLSPSGTMGAMGPMPAGSGGS 105
Score = 34.6 bits (79), Expect = 0.17
Identities = 19/121 (15%), Positives = 28/121 (23%), Gaps = 3/121 (2%)
Query: 1503 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYS 1562
Y +S YS S G + + P + S + A + S S
Sbjct: 1 SYYPEASESYSSVSGGMVYSMNSMNTYGPMNTSQGSANSSMNMSGYAGPGAMNGMSSSSM 60
Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
S S SP+ P S + + S S
Sbjct: 61 NGMSP-GYGGAGSPMGMMGMSSMGTSLSPSGT-MGAMGPM-PAGSGGSLSPNMSMSRASS 117
Query: 1623 A 1623
Sbjct: 118 Q 118
Score = 33.0 bits (75), Expect = 0.51
Identities = 19/121 (15%), Positives = 31/121 (25%), Gaps = 3/121 (2%)
Query: 1531 PGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1590
Y S +YS S G + + + P + + S + S + + S S
Sbjct: 1 SYYPEASESYSSVSGGMVYSMNSMNTYGPMNTSQGSANSSMNMSGYAGPGAMNGMSSSSM 60
Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
S + SP+ P S + S S S
Sbjct: 61 NGMSP-GYGGAGSPMGMMGMSSMGTSLSPSGT-MGAMGPM-PAGSGGSLSPNMSMSRASS 117
Query: 1651 S 1651
Sbjct: 118 Q 118
Score = 33.0 bits (75), Expect = 0.57
Identities = 20/120 (16%), Positives = 33/120 (27%), Gaps = 4/120 (3%)
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1666
Y S +YS S + S + P + S S + S Y+ +S +
Sbjct: 1 SYYPEASESYSSVSGGMVYSMNSMNTYGPMNTSQGSANSSMNMSGYAGPGAMNGMSSSSM 60
Query: 1667 SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPN 1726
+ SPGY S S +P S + + +
Sbjct: 61 NGMSPGYGGAGSPMGMMG--MSSMGTSLSPSGT-MGAMGPMPAGSGGSLSPNMSMSRASS 117
Score = 33.0 bits (75), Expect = 0.57
Identities = 19/121 (15%), Positives = 28/121 (23%), Gaps = 3/121 (2%)
Query: 1524 PGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1583
Y S YS S S + P + + S + S + + S S
Sbjct: 1 SYYPEASESYSSVSGGMVYSMNSMNTYGPMNTSQGSANSSMNMSGYAGPGAMNGMSSSSM 60
Query: 1584 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
S + SP+ P S + S S S
Sbjct: 61 NGMSP-GYGGAGSPMGMMGMSSMGTSLSPSGT-MGAMGPM-PAGSGGSLSPNMSMSRASS 117
Query: 1644 S 1644
Sbjct: 118 Q 118
Score = 31.9 bits (72), Expect = 1.1
Identities = 25/121 (20%), Positives = 34/121 (28%), Gaps = 12/121 (9%)
Query: 1490 FSPTSSPGYSPSSPGY--------SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYS 1541
+ P +S YS S G + S S S GY+ +S + +
Sbjct: 2 YYPEASESYSSVSGGMVYSMNSMNTYGPMNTSQGSANSSMNMSGYAGPGAMNGMSSSSMN 61
Query: 1542 PSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1601
SPGY S S SP+ P S + S S S
Sbjct: 62 GMSPGYGGAGS--PMGMMGMSSMGTSLSPSGT-MGAMGPM-PAGSGGSLSPNMSMSRASS 117
Query: 1602 S 1602
Sbjct: 118 Q 118
Score = 30.3 bits (68), Expect = 4.2
Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Query: 1482 SPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYS 1541
S Y G A + SS + SPGY G G S SP+ P
Sbjct: 44 SGYAGPGAMNGMSSSSMNGMSPGY--GGAGSPMGMMGMSSMGTSLSPSG-TMGAMGP-MP 99
Query: 1542 PSSPGYSPTSPAYSPTSPS 1560
S G + + S S
Sbjct: 100 AGSGGSLSPNMSMSRASSQ 118
>gnl|CDD|221625 pfam12533, Neuro_bHLH, Neuronal helix-loop-helix transcription
factor. This domain family is found in eukaryotes, and
is approximately 80 amino acids in length. The family is
found C-terminal to pfam00010. There is a single
completely conserved residue W that may be functionally
important. Neuronal basic helix-loop-helix (bHLH)
transcription factors such as neuroD and neurogenin have
been shown to play important roles in neuronal
development.
Length = 120
Score = 41.2 bits (97), Expect = 6e-04
Identities = 22/88 (25%), Positives = 25/88 (28%), Gaps = 9/88 (10%)
Query: 1521 PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1580
P S + Y SPG SP S S + + S P
Sbjct: 38 PEQQQDYSHSGSSPFSQHPYPYQSPGLP------SPPHGSMSSSHSLHLKPHGYCSAYEP 91
Query: 1581 SYSPTSPSYSPTSPSY-SPTSPSYSPTS 1607
Y SP SP Y P SP S
Sbjct: 92 FYESHSPDC--GSPPYDGPLSPPLSING 117
Score = 39.7 bits (93), Expect = 0.002
Identities = 22/82 (26%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Query: 1507 PSSPGYSPTSPGYSPTSPGYSPTSPGY-SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 1565
P S + Y SPG SP + S S + S P Y S
Sbjct: 38 PEQQQDYSHSGSSPFSQHPYPYQSPGLPSPPHGSMSSSHSLHLKPHGYCSAYEPFYESHS 97
Query: 1566 PSYSPTSPSY-SPTSPSYSPTS 1586
P SP Y P SP S
Sbjct: 98 PDC--GSPPYDGPLSPPLSING 117
Score = 39.7 bits (93), Expect = 0.002
Identities = 22/82 (26%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
P S S + Y SP SP S S + + S P Y S
Sbjct: 38 PEQQQDYSHSGSSPFSQHPYPYQSPGLPSPPHGSMSSSHSLHLKPHGYCSAYEPFYESHS 97
Query: 1608 PAYSPTSPAY-SPTSPAYSPTS 1628
P SP Y P SP S
Sbjct: 98 PDC--GSPPYDGPLSPPLSING 117
Score = 38.1 bits (89), Expect = 0.006
Identities = 24/77 (31%), Positives = 28/77 (36%), Gaps = 5/77 (6%)
Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
S+S +SP P SP P SP S S + + S P Y SP
Sbjct: 45 SHSGSSPFSQHPYPYQSPGLP--SPPHGSMSSSHSLHLKPHGYCSAYEPFYESHSPDC-- 100
Query: 1662 TSPAY-SPTSPGYSPTS 1677
SP Y P SP S
Sbjct: 101 GSPPYDGPLSPPLSING 117
Score = 38.1 bits (89), Expect = 0.007
Identities = 22/82 (26%), Positives = 25/82 (30%), Gaps = 4/82 (4%)
Query: 1570 PTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1628
P S S + Y SP SP S S + + S P Y S
Sbjct: 38 PEQQQDYSHSGSSPFSQHPYPYQSPGLPSPPHGSMSSSHSLHLKPHGYCSAYEPFYESHS 97
Query: 1629 PSYSPTSPSY-SPTSPSYSPTS 1649
P SP Y P SP S
Sbjct: 98 PDC--GSPPYDGPLSPPLSING 117
Score = 37.7 bits (88), Expect = 0.009
Identities = 24/85 (28%), Positives = 26/85 (30%), Gaps = 5/85 (5%)
Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGY-SPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1548
P YS S P Y SPG SP S + + S P Y
Sbjct: 36 LLPEQQQDYSHSGSSPFSQHP-YPYQSPGLPSPPHGSMSSSHSLHLKPHGYCSAYEPFYE 94
Query: 1549 PTSPAYSPTSPSY-SPTSPSYSPTS 1572
SP SP Y P SP S
Sbjct: 95 SHSPDC--GSPPYDGPLSPPLSING 117
Score = 37.3 bits (87), Expect = 0.013
Identities = 21/82 (25%), Positives = 24/82 (29%), Gaps = 4/82 (4%)
Query: 1500 PSSPGYSPSSPGYSPTSPGYSPTSPGY-SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
P S + Y SPG SP S + + S P Y S
Sbjct: 38 PEQQQDYSHSGSSPFSQHPYPYQSPGLPSPPHGSMSSSHSLHLKPHGYCSAYEPFYESHS 97
Query: 1559 PSYSPTSPSY-SPTSPSYSPTS 1579
P SP Y P SP S
Sbjct: 98 PDC--GSPPYDGPLSPPLSING 117
Score = 37.0 bits (86), Expect = 0.015
Identities = 21/84 (25%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
P S S + Y SP SP S S + + S P Y S
Sbjct: 38 PEQQQDYSHSGSSPFSQHPYPYQSPGLPSPPHGSMSSSHSLHLKPHGYCSAYEPFYESHS 97
Query: 1685 PTYSPTSPSYNPQSAKYSPSLAYS 1708
P SP Y+ SP L+ +
Sbjct: 98 PDC--GSPPYDGP---LSPPLSIN 116
Score = 33.9 bits (78), Expect = 0.19
Identities = 27/100 (27%), Positives = 32/100 (32%), Gaps = 16/100 (16%)
Query: 1471 LRLSPVT----DAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGY 1526
L+L+P T Q + G FS P SP P SP S + +
Sbjct: 29 LQLNPRTLLPEQQQDYSHSGSSPFSQHPYPYQSPGLP--SPPHGSMSSSHSLHLKPHGYC 86
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAY-SPTSPSYSPTS 1565
S P Y SP SP Y P SP S
Sbjct: 87 SAYEPFYESHSPDC---------GSPPYDGPLSPPLSING 117
Score = 32.3 bits (74), Expect = 0.71
Identities = 19/83 (22%), Positives = 23/83 (27%), Gaps = 1/83 (1%)
Query: 1640 PTSPSYSPTSPSYSPTSPSYSPTSPAY-SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
P S S + Y SP SP S + + S P Y S
Sbjct: 38 PEQQQDYSHSGSSPFSQHPYPYQSPGLPSPPHGSMSSSHSLHLKPHGYCSAYEPFYESHS 97
Query: 1699 AKYSPSLAYSPSSPRLSPASPYS 1721
P SP LS +S
Sbjct: 98 PDCGSPPYDGPLSPPLSINGNFS 120
Score = 30.8 bits (70), Expect = 2.0
Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 9/83 (10%)
Query: 1707 YSPSSPRLSPASPYSPTSPNY-SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSP 1765
YS S PY SP SP S S + + S P+ +PD
Sbjct: 44 YSHSGSSPFSQHPYPYQSPGLPSPPHGSMSSSHSLHLKPHGYCSAYEPFYESH-SPDC-- 100
Query: 1766 SSPQYSPSAGYSPSAPGYSPSST 1788
SP Y P +P S +
Sbjct: 101 GSPPYDG-----PLSPPLSINGN 118
Score = 30.4 bits (69), Expect = 2.9
Identities = 23/84 (27%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 1696 PQSAKYSPSLAYSPSSPRLSPASP--YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
Q YS S + S SP SP + S + S + S P Y SP
Sbjct: 39 EQQQDYSHSGSSPFSQHPYPYQSPGLPSPPHGSMSSSHSLHLKPHGYCSAYEPFYESHSP 98
Query: 1754 YNAGGGNPDYSPSSPQYSPSAGYS 1777
G P P SP S + +S
Sbjct: 99 --DCGSPPYDGPLSPPLSINGNFS 120
Score = 29.6 bits (67), Expect = 4.9
Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Query: 1689 PTSPSYNPQSAKY-SPSLAYSPSSPRLSPASPYSPTSPNYSPTS-SSYSPTSPSYS--PS 1744
S ++ Y SP L SP +S + Y Y SP P
Sbjct: 47 SGSSPFSQHPYPYQSPGLP-SPPHGSMSSSHSLHLKPHGYCSAYEPFYESHSPDCGSPPY 105
Query: 1745 SPTYSPSSPYN 1755
SP N
Sbjct: 106 DGPLSPPLSIN 116
>gnl|CDD|218181 pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain transcription factor
N terminal domain. The N terminus of the PEA3
transcription factors is implicated in transactivation
and in inhibition of DNA binding. Transactivation is
potentiated by activation of the Ras/MAP kinase and
protein kinase A signalling cascades. The N terminal
region contains conserved MAP kinase phosphorylation
sites.
Length = 336
Score = 43.7 bits (103), Expect = 7e-04
Identities = 49/232 (21%), Positives = 63/232 (27%), Gaps = 21/232 (9%)
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1608
PT P SPS S P YS ++ P S + P +P +P SP
Sbjct: 84 PTKIKREPQSPSKELNSSCSQKQPPYPYGEKCLYSYSAYDRKPAS-GFKPPTPPSTPCSP 142
Query: 1609 -AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
T P+ P + + PS P+ SP P S SY S
Sbjct: 143 VNPQETVRQLQPSGPLSNSSPPSPHTPLPNQSPLPPPMSSPDSSYPSEHRFQRQLS---E 199
Query: 1668 PTSPGYSPTSPSYSPTSPTY----SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPT 1723
P P P P Y S Y PQ K + P P
Sbjct: 200 PCLPFPPPPGRGSRDGRPPYHRQMSEPLVPYPPQGFK---QEYHDPLYEE--AGVPNQGP 254
Query: 1724 SPNY-----SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY 1770
P+ P +Y P S Y+ Y +
Sbjct: 255 FPHPMMIKQEPRDFTYDSEVPGC--HSSYGRAEGFYSNRHEGFSYDKEPRLF 304
Score = 36.8 bits (85), Expect = 0.089
Identities = 33/128 (25%), Positives = 42/128 (32%), Gaps = 16/128 (12%)
Query: 1491 SPTSSPGYS-----PSSPG-----YSPSSPGYSPTSPGYSPTSPGYSPTSP-GYSPTSPT 1539
SP+ S P P YS S+ P S G+ P +P +P SP T
Sbjct: 93 SPSKELNSSCSQKQPPYPYGEKCLYSYSAYDRKPAS-GFKPPTPPSTPCSPVNPQETVRQ 151
Query: 1540 YSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----PTSPSYSPTSPS 1595
PS P + + P+ P+ SP P S SY P P P
Sbjct: 152 LQPSGPLSNSSPPSPHTPLPNQSPLPPPMSSPDSSYPSEHRFQRQLSEPCLPFPPPPGRG 211
Query: 1596 YSPTSPSY 1603
P Y
Sbjct: 212 SRDGRPPY 219
Score = 35.2 bits (81), Expect = 0.26
Identities = 33/137 (24%), Positives = 43/137 (31%), Gaps = 13/137 (9%)
Query: 1514 PTSPGYSPTSPGYSPTSPGYSPTSPT-------YSPSSPGYSPTSPAYSPTSPSYSPTSP 1566
PT P SP S P YS S+ P S + P +P +P SP
Sbjct: 84 PTKIKREPQSPSKELNSSCSQKQPPYPYGEKCLYSYSAYDRKPAS-GFKPPTPPSTPCSP 142
Query: 1567 -SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS----PTS 1621
+ T P+ P + + PS P+ SP P S +Y P
Sbjct: 143 VNPQETVRQLQPSGPLSNSSPPSPHTPLPNQSPLPPPMSSPDSSYPSEHRFQRQLSEPCL 202
Query: 1622 PAYSPTSPSYSPTSPSY 1638
P P P Y
Sbjct: 203 PFPPPPGRGSRDGRPPY 219
Score = 34.8 bits (80), Expect = 0.40
Identities = 30/135 (22%), Positives = 39/135 (28%), Gaps = 23/135 (17%)
Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYS-------PSLAYSPSSPRLSPASPY 1720
PT P SPS S P + YS P+ + P +P +P SP
Sbjct: 84 PTKIKREPQSPSKELNSSCSQKQPPYPYGEKCLYSYSAYDRKPASGFKPPTPPSTPCSPV 143
Query: 1721 SPTS-----------PNYSPTSS-----SYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYS 1764
+P N SP S + SP P S +Y + P
Sbjct: 144 NPQETVRQLQPSGPLSNSSPPSPHTPLPNQSPLPPPMSSPDSSYPSEHRFQRQLSEPCLP 203
Query: 1765 PSSPQYSPSAGYSPS 1779
P S P
Sbjct: 204 FPPPPGRGSRDGRPP 218
Score = 30.2 bits (68), Expect = 9.4
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 1/65 (1%)
Query: 1729 PTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSST 1788
PT P SPS +S PY G YS S+ P++G+ P P +P S
Sbjct: 84 PTKIKREPQSPSKELNSSCSQKQPPYPYGE-KCLYSYSAYDRKPASGFKPPTPPSTPCSP 142
Query: 1789 SQYTP 1793
Sbjct: 143 VNPQE 147
>gnl|CDD|220401 pfam09786, CytochromB561_N, Cytochrome B561, N terminal. Members of
this family are found in the N terminal region of
cytochrome B561, as well as in various other putative
uncharacterized proteins.
Length = 559
Score = 44.0 bits (104), Expect = 7e-04
Identities = 40/152 (26%), Positives = 58/152 (38%), Gaps = 16/152 (10%)
Query: 1667 SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPN 1726
T + SP S TS + + P S S + SPS SP+ +SP+S
Sbjct: 109 QFTVVSQAKKSPPASKTSTPMNTSEPLVPGHS-----SFSDSPSRSA-SPSRKFSPSSTI 162
Query: 1727 -YSP-TSSSYSPTSPSYSPSSPTY-SPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGY 1783
SP + S P SPS S SP+Y S P N+ G S+ + SP A S
Sbjct: 163 QQSPQLTPSNKPASPSSSYQSPSYSSSLGPVNSSGNR-----SNLRSSPWALRSSGDKK- 216
Query: 1784 SPSSTSQYTPQTNRDDSTTKDDKNTKGDKSSR 1815
+T + +T + + T +
Sbjct: 217 -DITTDEKYLETFLAEVDEEQHMITSSAGKNA 247
Score = 43.2 bits (102), Expect = 0.001
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 6/111 (5%)
Query: 1639 SPTSPSYSPTSPSYSPTS-PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS-YNP 1696
T S + SP S TS P + +S SP+ S SP S +SP+S +P
Sbjct: 109 QFTVVSQAKKSPPASKTSTPMNTSEPLVPGHSSFSDSPSR-SASP-SRKFSPSSTIQQSP 166
Query: 1697 QSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPT 1747
Q + + S S S +S P N S S+ + + S
Sbjct: 167 QLTPSNKPASPSSSYQSPSYSSSLGP--VNSSGNRSNLRSSPWALRSSGDK 215
Score = 42.1 bits (99), Expect = 0.003
Identities = 44/213 (20%), Positives = 70/213 (32%), Gaps = 37/213 (17%)
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
T S + SP PA ++P + +S S SP+ S S S
Sbjct: 109 QFTVVSQAKKSP------PASKTSTPMNTSEPLVPGHSSFSDSPSR------SAS---PS 153
Query: 1650 PSYSPTSPS-YSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYS 1708
+SP+S SP + + S + S S +S S S N + + SP S
Sbjct: 154 RKFSPSSTIQQSPQLTPSNKPA-SPSSSYQSPSYSSSLGPVNS-SGNRSNLRSSPWALRS 211
Query: 1709 PSSPR------------LSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNA 1756
+ L+ + + +++ T S+ SSP++ +N
Sbjct: 212 SGDKKDITTDEKYLETFLAEVDEEQHMITSSAGKNATPPETINSFGSSSPSF-----WNY 266
Query: 1757 GGGNPDYSPSSP--QYSPSAGYSPSAPGYSPSS 1787
D + S Y S PS S S
Sbjct: 267 SRNASDAARSLKKRSYQLSPSPVPSKQKASTSP 299
Score = 40.9 bits (96), Expect = 0.007
Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 6/112 (5%)
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPAYSPT 1613
T S + SP S TS + + P S S SP+ S SP S +SP+S
Sbjct: 109 QFTVVSQAKKSPPASKTSTPMNTSEPLVPGHSSFSDSPSR-SASP-SRKFSPSST--IQQ 164
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1665
SP +P++ SP S SY S S S + S + + + +
Sbjct: 165 SPQLTPSNKPASP-SSSYQSPSYSSSLGPVNSSGNRSNLRSSPWALRSSGDK 215
Score = 39.8 bits (93), Expect = 0.013
Identities = 49/184 (26%), Positives = 66/184 (35%), Gaps = 15/184 (8%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSP-TSPSYSP 1591
+ P S+P + +S S SP+ S SP S +SP+S SP +PS P
Sbjct: 117 KKSPPASKTSTPMNTSEPLVPGHSSFSDSPSR-SASP-SRKFSPSSTIQQSPQLTPSNKP 174
Query: 1592 TSPSYSPTSPSYSP--TSPAYSPTSPAYSPTSPAY-SPTSPSYSPTSPSY------SPTS 1642
SPS S SPSYS S + A S T Y
Sbjct: 175 ASPSSSYQSPSYSSSLGPVNSSGNRSNLRSSPWALRSSGDKKDITTDEKYLETFLAEVDE 234
Query: 1643 PSYSPTSPSYSPTSPSYSPTSPA-YSPTSPGYSPTSPSYSPTSPTYS-PTSPSYNPQSAK 1700
+ TS + +P + S SP+ YS + + + S SPS P K
Sbjct: 235 EQHMITSSAGKNATPPETINSFGSSSPSFWNYSRNASDAARSLKKRSYQLSPSPVPSKQK 294
Query: 1701 YSPS 1704
S S
Sbjct: 295 ASTS 298
Score = 37.5 bits (87), Expect = 0.068
Identities = 57/223 (25%), Positives = 81/223 (36%), Gaps = 23/223 (10%)
Query: 1465 YLF-SPNLRLSPVTDAQFS-PYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPT 1522
YLF S L LS + + P+S +P + P PG+S
Sbjct: 84 YLFTSDQLVLSERQLGLLGVKAKDSQFTVVSQAKKSPPASKTSTPMNTS-EPLVPGHSSF 142
Query: 1523 SPGYSPTSPGYSPTSPTYSPSS-PGYSP-TSPAYSPTSPSYSPTSPSYSP--TSPSYSPT 1578
S SP+ + S +SPSS SP +P+ P SPS S SPSYS + S
Sbjct: 143 S--DSPS--RSASPSRKFSPSSTIQQSPQLTPSNKPASPSSSYQSPSYSSSLGPVNSSGN 198
Query: 1579 SPSYSPTSPSY-SPTSPSYSPTSPSY------SPTSPAYSPTSPAYSPTSPAYSPTSPSY 1631
+ + + S T Y + TS A +P T S+
Sbjct: 199 RSNLRSSPWALRSSGDKKDITTDEKYLETFLAEVDEEQHMITSSAGKNATP--PETINSF 256
Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY---SPTSP 1671
+SPS+ S + S + S S SP+ + TSP
Sbjct: 257 GSSSPSFWNYSRNASDAARSLKKRSYQLSPSPVPSKQKASTSP 299
>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau;
Validated.
Length = 647
Score = 43.7 bits (104), Expect = 9e-04
Identities = 26/149 (17%), Positives = 49/149 (32%), Gaps = 5/149 (3%)
Query: 1488 MAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
+AF P + P + + T+ + +P +P P ++P +P+ P
Sbjct: 357 LAFHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLP 416
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
TS + + + P + S + S S P +PS +
Sbjct: 417 ETTSQLLAARQQ---LQRAQGATKAKKSEPAAASRARPVNSALERLASVRP-APSALEKA 472
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
PA + T+P P +P +
Sbjct: 473 PAKKEAYR-WKATNPVEVKKEPVATPKAL 500
Score = 41.4 bits (98), Expect = 0.005
Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 7/141 (4%)
Query: 1605 PTSPAYSP-TSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
P +P P P + + + T+ + +P +P P ++P +P P TS
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420
Query: 1664 PAYSPTSP-----GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS 1718
+ G + S P + + + S + A P+ + +P A
Sbjct: 421 QLLAARQQLQRAQGATKAKKS-EPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAY 479
Query: 1719 PYSPTSPNYSPTSSSYSPTSP 1739
+ T+P +P +
Sbjct: 480 RWKATNPVEVKKEPVATPKAL 500
Score = 39.1 bits (92), Expect = 0.025
Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 6/145 (4%)
Query: 1549 PTSPAYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
P +P P P S + S T+ + +P +P P ++P +P P TS
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
+ + + P + S + S S P +PS +PA
Sbjct: 421 QLLAARQQ---LQRAQGATKAKKSEPAAASRARPVNSALERLASVRP-APSALEKAPAKK 476
Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSP 1692
+ T+P P +P +
Sbjct: 477 EAYR-WKATNPVEVKKEPVATPKAL 500
Score = 36.4 bits (85), Expect = 0.15
Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 5/137 (3%)
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
P + + T+ + +P +P P ++P +P P TS +
Sbjct: 369 EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQ 428
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1654
+ + P + + + + S P +PS +P+ +
Sbjct: 429 ---LQRAQGATKAKKSEPAAASRARPVNSALERLASVRP-APSALEKAPAKKEAYR-WKA 483
Query: 1655 TSPSYSPTSPAYSPTSP 1671
T+P P +P +
Sbjct: 484 TNPVEVKKEPVATPKAL 500
Score = 34.5 bits (80), Expect = 0.56
Identities = 17/145 (11%), Positives = 40/145 (27%), Gaps = 3/145 (2%)
Query: 1528 PTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1587
P + + + ++ + +P +P P ++P +P P TS +
Sbjct: 369 EVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQ 428
Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP-TSPAYSPTSPSYSPTSPSYSPTSPSYS 1646
+ S + P + A S +P++ +P +
Sbjct: 429 LQRAQGA--TKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNP 486
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSP 1671
+P + + T
Sbjct: 487 VEVKKEPVATPKALKKALEHEKTPE 511
>gnl|CDD|218883 pfam06075, DUF936, Plant protein of unknown function (DUF936). This
family consists of several hypothetical proteins from
Arabidopsis thaliana and Oryza sativa. The function of
this family is unknown.
Length = 564
Score = 43.7 bits (103), Expect = 9e-04
Identities = 45/261 (17%), Positives = 78/261 (29%), Gaps = 27/261 (10%)
Query: 1421 NDEMLKNAIELQLPSYMEGLEFGM----------TPARSPVSGTPYHDGMMSPGYLFSPN 1470
+D +L N ++L Y++ LE G P R P G P + +++ L +
Sbjct: 68 DDLILSNKLQLGQFIYVDRLEPGSPVPVLRGIRPVPGRHPCVGNP--EDLVAADSLAFFS 125
Query: 1471 LRLSPVTDAQF----SPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGY 1526
+ V + + S ++S SP+ G P S + T
Sbjct: 126 DAVIQVIKRKKASSAPRRGSWDSSSKSASIDSSPTVIGPRPRSFSELNLT---DRTPAKV 182
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
+ SP+ S P S +S S S ++P +
Sbjct: 183 RSSRSELGAPSPSGGTSCPS----SSGGRRSSIGSRRLRGSASLRKKVAVLSAPRKPGSR 238
Query: 1587 PSYS---PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
S P + S S SP S + S + TS S +
Sbjct: 239 SSDCKSSPRARSSSAKSPFKSSIQRKATKALSKLSLRASP-KDTSKSSKSEVAPPKKSEA 297
Query: 1644 SYSPTSPSYSPTSPSYSPTSP 1664
+S ++ + S+
Sbjct: 298 KVPSSSKKWTDGNVSWDSLPS 318
Score = 36.7 bits (85), Expect = 0.13
Identities = 42/207 (20%), Positives = 63/207 (30%), Gaps = 21/207 (10%)
Query: 1543 SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
++ + S A +S S S S S + S SPT P S S
Sbjct: 117 AADSLAFFSDAVIQVIKRKKASSAP-----RRGSWDSSSKSASIDS-SPTVIGPRPRSFS 170
Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
+ T + SPS + PS S S S ++
Sbjct: 171 ELNLT---DRTPAKVRSSRSELGAPSPSGGTSCPS-SSGGRRSSIGSRRLRGSASLRKKV 226
Query: 1663 SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSP 1722
+ +P PG + SP + + S SP K S + + +LS +
Sbjct: 227 AVLSAPRKPGSRSSDCKSSPRARSSSAKSPF------KSSIQRKATKALSKLSLRA---- 276
Query: 1723 TSPNYSPTSSSYSPTSPSYSPSSPTYS 1749
SP + SS P S + S
Sbjct: 277 -SPKDTSKSSKSEVAPPKKSEAKVPSS 302
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 43.0 bits (101), Expect = 0.001
Identities = 24/127 (18%), Positives = 47/127 (37%), Gaps = 6/127 (4%)
Query: 1671 PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPT 1730
P + P+ + + P+ + P++PR +P + SP +
Sbjct: 167 PAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETT--PTP 224
Query: 1731 SSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
S++ SP S + S T ++P + +P+ P +P G +P A S+
Sbjct: 225 STTTSPPSTTIPAPSTT--IAAPQAGTTPEAEGTPAPP--TPGGGEAPPANATPAPEASR 280
Query: 1791 YTPQTNR 1797
Y +
Sbjct: 281 YELTVTQ 287
Score = 42.6 bits (100), Expect = 0.002
Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 9/119 (7%)
Query: 1573 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS---PAYSPTSPAYSPTSPAYSPTSP 1629
P+ + + P+ ++P P PA +P + SP +PT
Sbjct: 167 PAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPA-TPRPTPRTTASPETTPTPS 225
Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS 1688
+ TSP S T P+ S T + + + +PA P +PG P+ + +P S
Sbjct: 226 T--TTSPP-STTIPAPSTTIAAPQAGTTPEAEGTPA--PPTPGGGEAPPANATPAPEAS 279
Score = 42.2 bits (99), Expect = 0.002
Identities = 49/251 (19%), Positives = 75/251 (29%), Gaps = 36/251 (14%)
Query: 1468 SPNLRLSPVTDAQFSPYVGGMAFSPT-SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGY 1526
+ N L P+ A F G +A P P S+P P + P +P
Sbjct: 153 ATNASLFPLGLAAFPAE-GTLAAPPLGEGSADGSCDPALPLSAPRLGPADV-FVPATPRP 210
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPT 1585
+P + T+PT S ++ S T PA S T + + + +P+ +P P
Sbjct: 211 TPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPA 270
Query: 1586 SPSYSPTSPSYSPTSPS------------------------------YSPTSPAYSPTSP 1615
+ + +P + Y T + Y P SP
Sbjct: 271 NATPAPEASRYELTVTQIIQIAIPASIIACVFLGSCACCLHRRCRRRRRRPARIYRPPSP 330
Query: 1616 AYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSP 1675
S + P SP S S + PS + S +
Sbjct: 331 VAPSISAVNEAALARLGDELKRHPPESPRRSKRRSSQTMV-PSLTAISEESEAPAVVELS 389
Query: 1676 TSPSYSPTSPT 1686
SP P PT
Sbjct: 390 RSPR-RPGGPT 399
Score = 41.9 bits (98), Expect = 0.003
Identities = 42/227 (18%), Positives = 66/227 (29%), Gaps = 33/227 (14%)
Query: 1552 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
PA + + P+ ++P P T T+ S T +
Sbjct: 167 PAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPST 226
Query: 1612 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPAYSPTS 1670
TSP S T PA S T + + + +P+ +P P + + +P + Y T
Sbjct: 227 TTSPP-STTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEASRYELTV 285
Query: 1671 PGYSPTSPSYS-----------------------PTSPTYSPTSPSYNPQSAKYSPSLA- 1706
+ S + Y P SP SA +LA
Sbjct: 286 TQIIQIAIPASIIACVFLGSCACCLHRRCRRRRRRPARIYRPPSPVAPSISAVNEAALAR 345
Query: 1707 -------YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
+ P SPR S P+ + S + SP
Sbjct: 346 LGDELKRHPPESPRRSKRRSSQTMVPSLTAISEESEAPAVVELSRSP 392
Score = 41.1 bits (96), Expect = 0.005
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSP 1743
+ +P SA S A S+PRL PA + P +P +P +++ T+P +P
Sbjct: 167 PAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTP--TP 224
Query: 1744 SSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPG--YSPSSTSQYTPQTNRDDST 1801
S+ T PS+ A + +P PG +P + + P+ +R + T
Sbjct: 225 STTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEASRYELT 284
Query: 1802 T 1802
Sbjct: 285 V 285
Score = 37.6 bits (87), Expect = 0.057
Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 18/131 (13%)
Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYS 1702
P+ + + PA ++P P + P +P +P + + S
Sbjct: 167 PAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPAD-VFVPATPRPTPRTTA--------S 217
Query: 1703 PSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPD 1762
P +PS+ P++ S + + +P + +P+ PT GGG
Sbjct: 218 PETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEG-TPAPPT--------PGGGEAP 268
Query: 1763 YSPSSPQYSPS 1773
+ ++P S
Sbjct: 269 PANATPAPEAS 279
Score = 35.7 bits (82), Expect = 0.22
Identities = 17/116 (14%), Positives = 39/116 (33%), Gaps = 4/116 (3%)
Query: 1636 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS---PGYSPTSPSYSPTSPTYSPTSP 1692
P+ + + P+ ++P P P +P + SP +PT
Sbjct: 167 PAEGTLAAPPLGEGSADGSCDPALPLSAPRLGPADVFVPA-TPRPTPRTTASPETTPTPS 225
Query: 1693 SYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTY 1748
+ + P+ + + ++P+ T +P P + + +P + Y
Sbjct: 226 TTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPEASRY 281
Score = 31.8 bits (72), Expect = 3.2
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 12/114 (10%)
Query: 1696 PQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYN 1755
++ + LA P+ L+ S+ P+ S+P P+ +
Sbjct: 154 TNASLFPLGLAAFPAEGTLAAPPLGE---------GSADGSCDPALPLSAPRLGPADVFV 204
Query: 1756 AGGGNPD-YSPSSPQYS--PSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDK 1806
P + +SP+ + PS SP + ST+ PQ
Sbjct: 205 PATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPA 258
>gnl|CDD|221371 pfam12004, DUF3498, Domain of unknown function (DUF3498). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 433 to 538 amino acids in length. This domain is
found associated with pfam00616, pfam00168. This domain
has two conserved sequence motifs: DLQ and PLSFQNP.
Length = 489
Score = 43.2 bits (101), Expect = 0.001
Identities = 60/268 (22%), Positives = 83/268 (30%), Gaps = 12/268 (4%)
Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1553
+ P + SSP YS S P + G S + + SSP P +
Sbjct: 70 TRPSLAQSSPAYSSSYS--EINEPELGMPNGGRSLSLVDLQDAASGQVHSSPMGLPGALG 127
Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
S +S S S + + P +PT P S +P Y
Sbjct: 128 LRRASVPWSARSGQ-SSIAGGLRLSQPQSAPTVRLLHAAPAQPQLLQP-LSFQNPVYHMA 185
Query: 1614 SPAYSPTSP-AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPAYSPTS 1670
+P P SP S + S +S S S + S S T S T S
Sbjct: 186 AP--LPVSPRGDSGSENHSSASSHSNSEDCSLSAGFSNSGGEEFTRRSTDFTRRQLSLPD 243
Query: 1671 PGYSPTSPSYSPTSPTYSPTSPS---YNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY 1727
+ P P + P PS + PSL S S +S + +
Sbjct: 244 RQHQPALPRQNSAGPQRRVDQPSPPGGGSHRGRIPPSLLSSLPSEGSMLSSEWPQSGARP 303
Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSSPYN 1755
SSS SP P++ SP N
Sbjct: 304 RQQSSSSKGDSPELRPAAGHLQQPSPVN 331
Score = 36.6 bits (84), Expect = 0.12
Identities = 45/225 (20%), Positives = 66/225 (29%), Gaps = 22/225 (9%)
Query: 1485 VGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT-------- 1536
V + G +S +S S S + G + P +PT
Sbjct: 115 VHSSPMGLPGALGLRRASVPWSARSGQ-SSIAGGLRLSQPQSAPTVRLLHAAPAQPQLLQ 173
Query: 1537 -----SPTYSPSSPGYSPTSP-AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPS 1588
+P Y ++P P SP S + S +S S S + S S T S
Sbjct: 174 PLSFQNPVYHMAAPL--PVSPRGDSGSENHSSASSHSNSEDCSLSAGFSNSGGEEFTRRS 231
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
T S + P P + P P+ P S+ P +S +
Sbjct: 232 TDFTRRQLSLPDRQHQPALPRQNSAGPQRRVDQPS-PPGGGSHRGRIPPSLLSSLPSEGS 290
Query: 1649 SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
S P + S S G SP + SP + S
Sbjct: 291 MLSSEWPQSGARPRQQSSS--SKGDSPELRPAAGHLQQPSPVNMS 333
Score = 33.9 bits (77), Expect = 0.87
Identities = 45/254 (17%), Positives = 67/254 (26%), Gaps = 12/254 (4%)
Query: 1474 SPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGY 1533
S + + + GG + S + SP + G
Sbjct: 86 SEINEPELGMPNGGRSLSLVDLQDAASGQVHSSPMGL----PGALGLRRASVPWSARSGQ 141
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS-YSPT 1592
S + S P +PT P S +P Y +P P SP S +
Sbjct: 142 SSIAGGLRLSQPQSAPTVRLLHAAPAQPQLLQP-LSFQNPVYHMAAPL--PVSPRGDSGS 198
Query: 1593 SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP--TSPSYSPTSPSYSPTSPSYSPTSP 1650
S +S S S + S + S T S + P P + P
Sbjct: 199 ENHSSASSHSNSEDCSLSAGFSNSGGEEFTRRSTDFTRRQLSLPDRQHQPALPRQNSAGP 258
Query: 1651 SYSPTSPSYSPTSP--AYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYS 1708
PS P S S S +S + S+ S
Sbjct: 259 QRRVDQPSPPGGGSHRGRIPPSLLSSLPSEGSMLSSEWPQSGARPRQQSSSSKGDSPELR 318
Query: 1709 PSSPRLSPASPYSP 1722
P++ L SP +
Sbjct: 319 PAAGHLQQPSPVNM 332
Score = 33.5 bits (76), Expect = 1.3
Identities = 58/277 (20%), Positives = 84/277 (30%), Gaps = 23/277 (8%)
Query: 1527 SPTSPG---YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1583
SPT + T P+ + SSP YS + P + S + +
Sbjct: 58 SPTPENKDLFFVTRPSLAQSSPAYSSSYS--EINEPELGMPNGGRSLSLVDLQDAASGQV 115
Query: 1584 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
+SP P + S +S S S + + P +PT P
Sbjct: 116 HSSPMGLPGALGLRRASVPWSARSGQ-SSIAGGLRLSQPQSAPTVRLLHAAPAQPQLLQP 174
Query: 1644 SYSPTSPSYSPTSPSYSPTSP-AYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYS 1702
S +P Y +P P SP S + S +S S S + S S + + S
Sbjct: 175 -LSFQNPVYHMAAPL--PVSPRGDSGSENHSSASSHSNSEDCSLSAGFSNSGGEEFTRRS 231
Query: 1703 ----------PSLAYSPSSPRLSPASPYSPTSPNYSPTSSS---YSPTSPSYSPSSPTYS 1749
P + P+ PR + A P P S P S S S
Sbjct: 232 TDFTRRQLSLPDRQHQPALPRQNSAGPQRRVDQPSPPGGGSHRGRIPPSLLSSLPSEGSM 291
Query: 1750 PSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPS 1786
SS + G P SS + + PS
Sbjct: 292 LSSEWPQSGARPRQQSSSSKGDSPELRPAAGHLQQPS 328
Score = 30.4 bits (68), Expect = 9.7
Identities = 27/154 (17%), Positives = 40/154 (25%), Gaps = 22/154 (14%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGY----------------SPTSPGYSP 1535
P S G S S S SS S + S S + P
Sbjct: 189 PVSPRGDSGSENHSSASSHSNSEDCSLSAGFSNSGGEEFTRRSTDFTRRQLSLPDRQHQP 248
Query: 1536 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1595
P + + P P+ P S+ P +S + S P S
Sbjct: 249 ALPRQNSAGPQRRVDQPS-PPGGGSHRGRIPPSLLSSLPSEGSMLSSEWPQSGARPRQQS 307
Query: 1596 YS-----PTSPSYSPTSPAYSPTSPAYSPTSPAY 1624
S P + SP + + + A+
Sbjct: 308 SSSKGDSPELRPAAGHLQQPSPVNMSALERTAAW 341
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 43.1 bits (101), Expect = 0.001
Identities = 19/95 (20%), Positives = 25/95 (26%), Gaps = 3/95 (3%)
Query: 1506 SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 1565
+ T G + P YS + T+ P
Sbjct: 358 RVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPAR-SPMTAYPPVPQFCGDPGLV 416
Query: 1566 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
Y+P SP S P P PT+P P S
Sbjct: 417 SPYNPQSPGTSYGPEPVGPVPP--QPTNPYVMPIS 449
Score = 43.1 bits (101), Expect = 0.001
Identities = 23/102 (22%), Positives = 31/102 (30%), Gaps = 4/102 (3%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
S T+P+ + A T + P YS + S T+ P
Sbjct: 352 SLTAPS-RVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARS-PMTAYPPVPQF 409
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
Y+P SP S P P PT+P P S
Sbjct: 410 CGDPGLVSPYNPQSPGTSYGPEPVGPVPP--QPTNPYVMPIS 449
Score = 41.9 bits (98), Expect = 0.003
Identities = 20/95 (21%), Positives = 27/95 (28%), Gaps = 3/95 (3%)
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
+ A + T + P YS + S T+ P
Sbjct: 358 RVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARS-PMTAYPPVPQFCGDPGLV 416
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
Y+P SP S P P PT+P P S
Sbjct: 417 SPYNPQSPGTSYGPEPVGPVPP--QPTNPYVMPIS 449
Score = 41.9 bits (98), Expect = 0.004
Identities = 25/111 (22%), Positives = 33/111 (29%), Gaps = 11/111 (9%)
Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
+ S T+PS + + A P P YS + S
Sbjct: 350 TASLTAPS-RVLAAAAKVAVIA--APQTHTGPA-----DRQRPQRPDGIPYSVPARS-PM 400
Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
T+ P Y+P SPG S P P PT+P P S
Sbjct: 401 TAYPPVPQFCGDPGLVSPYNPQSPGTSYGPEPVGPVPPQ--PTNPYVMPIS 449
Score = 41.5 bits (97), Expect = 0.005
Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 3/100 (3%)
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
+ + + + T + P YS + S T+ P
Sbjct: 353 LTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARS-PMTAYPPVPQFCG 411
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
Y+P SP S P P PT+P P S
Sbjct: 412 DPGLVSPYNPQSPGTSYGPEPVGPVPPQ--PTNPYVMPIS 449
Score = 41.1 bits (96), Expect = 0.005
Identities = 19/100 (19%), Positives = 26/100 (26%), Gaps = 3/100 (3%)
Query: 1515 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1574
+ + T + P YS + S T+ P
Sbjct: 353 LTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARS-PMTAYPPVPQFCG 411
Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
Y+P SP S P P PT+P P S
Sbjct: 412 DPGLVSPYNPQSPGTSYGPEPVGPVPP--QPTNPYVMPIS 449
Score = 39.6 bits (92), Expect = 0.015
Identities = 22/105 (20%), Positives = 31/105 (29%), Gaps = 6/105 (5%)
Query: 1567 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA-YS 1625
+ S T+PS + + + P + PA SP +
Sbjct: 350 TASLTAPS-RVLAAAAKVAVIA--APQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPV 406
Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
P Y+P SP S P P PT+P P S
Sbjct: 407 PQFCGDPGLVSPYNPQSPGTSYGPEPVGPVPPQ--PTNPYVMPIS 449
Score = 39.2 bits (91), Expect = 0.023
Identities = 22/105 (20%), Positives = 31/105 (29%), Gaps = 6/105 (5%)
Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS-YS 1632
+ S T+PS + + + P + PA SP +
Sbjct: 350 TASLTAPS-RVLAAAAKVAVIA--APQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPV 406
Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 1677
P Y+P SP S P P PT+P P S
Sbjct: 407 PQFCGDPGLVSPYNPQSPGTSYGPEPVGPVPP--QPTNPYVMPIS 449
Score = 39.2 bits (91), Expect = 0.023
Identities = 22/105 (20%), Positives = 31/105 (29%), Gaps = 6/105 (5%)
Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP 1619
+ S T+PS + + + P + PA SP +
Sbjct: 350 TASLTAPS-RVLAAAAKVAVIA--APQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPV 406
Query: 1620 TSPAYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
P Y+P SP S P P PT+P P S
Sbjct: 407 PQFCGDPGLVSPYNPQSPGTSYGPEPVGPVPPQ--PTNPYVMPIS 449
Score = 36.9 bits (85), Expect = 0.11
Identities = 19/95 (20%), Positives = 25/95 (26%), Gaps = 5/95 (5%)
Query: 1493 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT-YSPSSPGYSPTS 1551
+ + P G + P SP + P G
Sbjct: 359 VLAAAAKVAVIA--APQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLV 416
Query: 1552 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
Y+P SP S P P PT+P P S
Sbjct: 417 SPYNPQSPGTSYGPEPVGPVPP--QPTNPYVMPIS 449
Score = 35.4 bits (81), Expect = 0.34
Identities = 19/111 (17%), Positives = 27/111 (24%), Gaps = 16/111 (14%)
Query: 1662 TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS 1721
+ + + T + P YS + S P P
Sbjct: 353 LTAPSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVP---ARSPMTAYPPVPQF 409
Query: 1722 PTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
P S Y+P SP S P P P++P P
Sbjct: 410 CGDPG---LVSPYNPQSPGTSYGPEPVGPVPP----------QPTNPYVMP 447
Score = 35.0 bits (80), Expect = 0.39
Identities = 24/105 (22%), Positives = 34/105 (32%), Gaps = 8/105 (7%)
Query: 1644 SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP 1703
+ S T+PS + + A T G + P YS + S P
Sbjct: 350 TASLTAPS-RVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARS----PMTAYP 404
Query: 1704 SLAYSPSSPRL-SPASPYSPTSPNYSPTSSSY--SPTSPSYSPSS 1745
+ P L SP +P SP + PT+P P S
Sbjct: 405 PVPQFCGDPGLVSPYNPQSPGTSYGPEPVGPVPPQPTNPYVMPIS 449
Score = 32.7 bits (74), Expect = 2.1
Identities = 24/116 (20%), Positives = 32/116 (27%), Gaps = 16/116 (13%)
Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
+ S T+PS + + + P P P P S SP
Sbjct: 350 TASLTAPS-RVLAAAAKVAVIA--APQTHTGPA-DRQRPQRPDGIPYSV--PARSPMTAY 403
Query: 1697 QSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSS 1752
SPY+P SP S P P P++P P S
Sbjct: 404 PPVPQFCGDP--------GLVSPYNPQSPGTSYGPEPVGPVPP--QPTNPYVMPIS 449
Score = 31.9 bits (72), Expect = 3.8
Identities = 19/106 (17%), Positives = 28/106 (26%), Gaps = 10/106 (9%)
Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
+ + + + P + P SP +
Sbjct: 353 LTAPSRVLAAAAKVAVI--AAPQTHTGPADRQRPQRPDGIPYSVPARSPMTAYPPVPQFC 410
Query: 1687 YSP-TSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS 1731
P YNP SP +Y P + P P PT+P P S
Sbjct: 411 GDPGLVSPYNP----QSPGTSYGP--EPVGPVPP-QPTNPYVMPIS 449
Score = 30.7 bits (69), Expect = 8.1
Identities = 22/94 (23%), Positives = 26/94 (27%), Gaps = 14/94 (14%)
Query: 1475 PVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYS 1534
V A + P G S P SP T+ P G Y+
Sbjct: 367 AVIAAPQTHTGPADRQRPQRPDGIPYSVPARSP------MTAYPPVPQFCGDPGLVSPYN 420
Query: 1535 PTSPTYSPSSP---GYSPTSPAYSPTSPSYSPTS 1565
P SP S P PT+P P S
Sbjct: 421 PQSPGTSYGPEPVGPVPPQ-----PTNPYVMPIS 449
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 42.1 bits (99), Expect = 0.001
Identities = 38/200 (19%), Positives = 52/200 (26%), Gaps = 38/200 (19%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGY-SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
P + + ++ G S + P S S G +P + + S
Sbjct: 6 VPCAKTAAAAANVGSRLSRSSFRLQPKPNISFPSKGPNPKRSAVPKVKAQLNEVAVDGSS 65
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYS------------------ 1590
S +P+ P P S S S + P S +
Sbjct: 66 NSAKSDDPKSEVAPSEPKDEPPSNSSSKPNLPDEESISEFMTQVSSLVKLVDSRDIVELQ 125
Query: 1591 ----------------PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT 1634
P P +P P A P SP PA S + S PT
Sbjct: 126 LKQLDCELVIRKKEALPQPPPPAPVVMMQPPPPHAMPPASPP--AAQPAPSAPASSPPPT 183
Query: 1635 SPSYSPTSPSYSPTSPSYSP 1654
S P S P SP
Sbjct: 184 PASPPPAKAPKSSHPPLKSP 203
Score = 35.6 bits (82), Expect = 0.17
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 2/64 (3%)
Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
P P +P P + P SP + +PS +SP +P SP P S P
Sbjct: 142 PQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASP--PPAKAPKSSHPP 199
Query: 1686 TYSP 1689
SP
Sbjct: 200 LKSP 203
Score = 35.2 bits (81), Expect = 0.22
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 1619 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1678
P P +P P + P SP + +PS +SP +P SP P S P
Sbjct: 142 PQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASP--PPAKAPKSSHPP 199
Query: 1679 SYSPTSPTY 1687
SP + T+
Sbjct: 200 LKSPMAGTF 208
Score = 35.2 bits (81), Expect = 0.25
Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
P P +P P + P SP PA S + PT S P S P
Sbjct: 142 PQPPPPAPVVMMQPPPPHAMPPASPP--AAQPAPSAPASSPPPTPASPPPAKAPKSSHPP 199
Query: 1693 SYNP 1696
+P
Sbjct: 200 LKSP 203
Score = 32.5 bits (74), Expect = 1.6
Identities = 26/92 (28%), Positives = 32/92 (34%), Gaps = 17/92 (18%)
Query: 1696 PQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYN 1755
PQ +P + P P P + P S +SS PT S P +P S +
Sbjct: 142 PQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPAS---PPPAKAPKSSH- 197
Query: 1756 AGGGNPDYSPSSPQYSPSAG--YSPSAPGYSP 1785
P SP AG Y APG P
Sbjct: 198 -----------PPLKSPMAGTFYRSPAPGEPP 218
Score = 32.5 bits (74), Expect = 1.7
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYS 1702
P P +P P A P SP P+ S + + PT S P A S
Sbjct: 142 PQPPPPAPVVMMQPPPPHAMPPASP--PAAQPAPSAPASSPPPTPASPPPAKAPKS 195
>gnl|CDD|227928 COG5641, GAT1, GATA Zn-finger-containing transcription factor
[Transcription].
Length = 498
Score = 42.9 bits (101), Expect = 0.002
Identities = 58/306 (18%), Positives = 90/306 (29%), Gaps = 44/306 (14%)
Query: 1542 PSSPGYSPT---SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPS 1595
PS P + + SP + + +S S +S S P S S S SPS + T S
Sbjct: 67 PSLPSGNASISGSPRFVNRIQEHRASSRQSSISSLSDFPISSSSSTSNAASPSTNYTDES 126
Query: 1596 YSPTSPSYSPTSPAYSPTSPAYS----PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
S + +P TS + + TS + S S +
Sbjct: 127 NQQFSSYNTTLNP--GGTSSLNPNNNQSDNSNQPHVCSNCKTTSTPLWRRASSESSLPGN 184
Query: 1652 Y----------SPTSPSYSPTSPAYSPTSPGY--------SPTSPSYSPTSPTYSPTSPS 1693
SP + + S S S + + + S + +
Sbjct: 185 NLCNACGLYLKLHGSPRAPISLKSDSIKSRSSRSSHNNNDSNGENANTESIGNSSASKLT 244
Query: 1694 YNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP----NYSPTSSSYSPTSPSYSPSSPTYS 1749
+ + L S LSP S +P SP TS T PS S
Sbjct: 245 KSWEERPQGRQLLSDAGS--LSPRSN-NPKSPLLEGLMGSTSLQPVSTPKLVLPSDKKRS 301
Query: 1750 PSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTK 1809
+P + S + +S +A G + P + D +K T
Sbjct: 302 TL-------TTSTATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKPDPNSKRSNATC 354
Query: 1810 GDKSSR 1815
+ SS
Sbjct: 355 MNCSST 360
Score = 36.8 bits (85), Expect = 0.12
Identities = 60/337 (17%), Positives = 95/337 (28%), Gaps = 28/337 (8%)
Query: 1454 TPYHDGMMSPGY---LFSPNLRLSPVTDAQFSPYVGGMAF--SPTSSPGY-SPSSPGYSP 1507
T + S L+P + + + TS+P + SS P
Sbjct: 123 TDESNQQFSSYNTTLNPGGTSSLNPNNNQSDNSNQPHVCSNCKTTSTPLWRRASSESSLP 182
Query: 1508 SSPGYSPTSPGYS-PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS-PAYSPTSPSYSPTS 1565
+ + SP + S S + S A + + + +S
Sbjct: 183 GNNLCNACGLYLKLHGSPRAPISLKSDSIKSRSSRSSHNNNDSNGENANTESIGN---SS 239
Query: 1566 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPAYSPTSPAYSPTS 1621
S S P + S SP S + P SP TS T P+
Sbjct: 240 ASKLTKSWEERPQGRQLLSDAGSLSPRSNN--PKSPLLEGLMGSTSLQPVSTPKLVLPSD 297
Query: 1622 PAYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT---- 1676
S + S +P S S S S S P P P S + T
Sbjct: 298 KKRSTLTTSTATPLWRRTSDKSSFSCNASGSALKPPGSKRPLLPKPDPNSKRSNATCMNC 357
Query: 1677 --SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPT---S 1731
+P+ SP + SP + + S + + + + S
Sbjct: 358 SSTPTNKILSPPTTSNSPGAQVKLPNQTRSTGATKKKITRRRMNSGKIPALSSSMKNPVP 417
Query: 1732 SSYSPTSPSYSPS-SPTYSPSSPYNAGGGNPDYSPSS 1767
+SP P + S +P+ S SS + S
Sbjct: 418 KEFSPLIPQSTESETPSQSKSSLTSKLEEFESLSLLK 454
>gnl|CDD|223066 PHA03379, PHA03379, EBNA-3A; Provisional.
Length = 935
Score = 42.7 bits (100), Expect = 0.002
Identities = 63/322 (19%), Positives = 87/322 (27%), Gaps = 41/322 (12%)
Query: 1439 GLEFGMTPARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGY 1498
+ P G PG + +PV A P V S + PG
Sbjct: 461 SMAPCPVAQLPPGPLQDLEPGDQLPGVVQDGRPACAPVP-APAGPIVRPWEASLSQVPGV 519
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
+ + P P P P PT P P + + G + P
Sbjct: 520 AFA-----PVMPQPMPVEPVPVPTVALERPVCPAPPLIAMQGPGETSGIVRVRERWRP-- 572
Query: 1559 PSYSPTSP-SYSPTS---------PSYSPTSPSYS---PTSPSYSPTSPSYSPTSPSYS- 1604
++P P S S S P S P SP P P P
Sbjct: 573 APWTPNPPRSPSQMSVRDRLARLRAEAQPYQASVEVQPPQLTQVSPQQPMEYPLEPEQQM 632
Query: 1605 -PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSP 1661
P SP + PA P P +P +P + P P P+ P
Sbjct: 633 FPGSPFSQVADVMRAGGVPAMQPQYFDLPLQQPISQGAPLAPLRASMGP--VPPVPATQP 690
Query: 1662 T---SPAYSPTSPGYS-----PTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSP- 1712
P P + G S P P P P + QS + + + P
Sbjct: 691 QYFDIPLTEPINQGASAAHFLPQQPMEGPLVPERWMFQGATLSQSVRPGVAQSQYFDLPL 750
Query: 1713 -----RLSPASPYSPTSPNYSP 1729
+PA+ + P P
Sbjct: 751 TQPINHGAPAAHFLHQPPMEGP 772
Score = 33.9 bits (77), Expect = 1.0
Identities = 32/177 (18%), Positives = 45/177 (25%), Gaps = 7/177 (3%)
Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
PT + P P P T+ S+ P P P + S A P +
Sbjct: 411 PTYGTPRPPVEKPRPEVPQSLETATSHGSAQVPEPPPVHDLEP-GPLHDQHSMAPCPVAQ 469
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
P +P +P P P + S PG + +P
Sbjct: 470 LPPGPLQDLEPGDQLPGVVQDGRPACAPVPAPAGPIVRPWEASLS-QVPGVAF-----AP 523
Query: 1683 TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
P P P P A P P P + ++P P
Sbjct: 524 VMPQPMPVEPVPVPTVALERPVCPAPPLIAMQGPGETSGIVRVRERWRPAPWTPNPP 580
>gnl|CDD|165564 PHA03309, PHA03309, transcriptional regulator ICP4; Provisional.
Length = 2033
Score = 42.5 bits (99), Expect = 0.003
Identities = 58/202 (28%), Positives = 81/202 (40%), Gaps = 26/202 (12%)
Query: 1530 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-----P 1584
S G S +S + S SS SP+S +PS SP SP+ P +P S S
Sbjct: 1812 SAGRSSSSSSSSSSSSSSSPSSRPSRSATPSLSP-----SPSPPRRAPVDRSRSGRRRER 1866
Query: 1585 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP--TSPSYSPTSPSYSPTS 1642
PS +P ++P S + SP T+P +P + P P ++P+S + T
Sbjct: 1867 DRPSANPF--RWAPRQRSRADHSP--DGTAPGDAPLNLEDGPGRGRPIWTPSSAT---TL 1919
Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYS 1702
PS S S T S +P+ S S P YS NP+ K
Sbjct: 1920 PSRSGPEDSVDETETEDSAPPARLAPSPLETSRAEDSEDSEYPEYS------NPRLGKSP 1973
Query: 1703 PSLAYSPSSPRLSPASPYSPTS 1724
P+L S + R S P P+S
Sbjct: 1974 PALK-SREARRPSSKQPRRPSS 1994
Score = 38.7 bits (89), Expect = 0.040
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSP 1736
S S S +S + S +SPS P S +PSL+ SPS PR +P + S +
Sbjct: 1816 SSSSSSSSSSSSSSSPSSRP-SRSATPSLSPSPSPPRRAPV--------DRSRSGRRRER 1866
Query: 1737 TSPSYSPS--SPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQ 1794
PS +P +P + ++ G P +P + + P G P + + S+ P+
Sbjct: 1867 DRPSANPFRWAPRQRSRADHSPDGTAPGDAPLNLEDGPGRGRPIWTPSSATTLPSRSGPE 1926
Query: 1795 TNRDDSTTKD 1804
+ D++ T+D
Sbjct: 1927 DSVDETETED 1936
Score = 37.9 bits (87), Expect = 0.062
Identities = 55/193 (28%), Positives = 79/193 (40%), Gaps = 16/193 (8%)
Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1645
S S S +S S S +SPS P+ A SP SP+ P +P S S PS
Sbjct: 1816 SSSSSSSSSSSSSSSPSSRPSRSATPSLSP--SPSPPRRAPVDRSRS--GRRRERDRPSA 1871
Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP--TSPTYSPTSPSYNPQSAKYSP 1703
+P ++P S + SP T+PG +P + P P ++P+S + P +
Sbjct: 1872 NPF--RWAPRQRSRADHSP--DGTAPGDAPLNLEDGPGRGRPIWTPSSATTLPSRSGPED 1927
Query: 1704 SLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDY 1763
S+ + + PA +P+ S S P Y S+P S P A
Sbjct: 1928 SVDETETEDSAPPAR-LAPSPLETSRAEDSEDSEYPEY--SNPRLGKSPP--ALKSREAR 1982
Query: 1764 SPSSPQ-YSPSAG 1775
PSS Q PS+G
Sbjct: 1983 RPSSKQPRRPSSG 1995
Score = 33.7 bits (76), Expect = 1.3
Identities = 49/185 (26%), Positives = 68/185 (36%), Gaps = 23/185 (12%)
Query: 1495 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1554
S G S SS S SS SP+S +P SP SPS P +P
Sbjct: 1812 SAGRSSSSSSSSSSSSSSSPSSRPSRSATPSLSP------------SPSPPRRAPVD--R 1857
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPAYSP 1612
S + PS +P ++P S + SP T+P +P + P P ++P
Sbjct: 1858 SRSGRRRERDRPSANPF--RWAPRQRSRADHSP--DGTAPGDAPLNLEDGPGRGRPIWTP 1913
Query: 1613 TSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
+S + T P+ S S T S +P+ S S P YS G
Sbjct: 1914 SS---ATTLPSRSGPEDSVDETETEDSAPPARLAPSPLETSRAEDSEDSEYPEYSNPRLG 1970
Query: 1673 YSPTS 1677
SP +
Sbjct: 1971 KSPPA 1975
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 41.9 bits (99), Expect = 0.004
Identities = 17/119 (14%), Positives = 43/119 (36%)
Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
+ + + + +PS + +P+ +P + +P + + + + P +P
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
+ +PS P + P+ +P + +P+ +P +PA G
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG 505
Score = 40.4 bits (95), Expect = 0.011
Identities = 16/127 (12%), Positives = 35/127 (27%), Gaps = 5/127 (3%)
Query: 1504 GYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSP 1563
+ +P + S + + +P++ + A P
Sbjct: 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAP-----AAAAPAAAAAPAPAAAPQPAPAPAPA 438
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
+P + +PS P + P+ +P + +PA +P +PA
Sbjct: 439 PAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPA 498
Query: 1624 YSPTSPS 1630
Sbjct: 499 APAAPAG 505
Score = 40.4 bits (95), Expect = 0.012
Identities = 14/125 (11%), Positives = 36/125 (28%), Gaps = 5/125 (4%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1551
+ +P++ S ++ + +P + + P+ +
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAP-----AAAAPAAAAAPAPAAAPQPAPAPAPAPA 440
Query: 1552 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
P + +PS P + P+ +P + +P+ +P +PA
Sbjct: 441 PPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAP 500
Query: 1612 PTSPA 1616
Sbjct: 501 AAPAG 505
Score = 40.0 bits (94), Expect = 0.013
Identities = 30/182 (16%), Positives = 52/182 (28%), Gaps = 16/182 (8%)
Query: 1446 PARSPVSGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGY 1505
PA + + P V + P + + G+ + G
Sbjct: 627 PAPAGAAAAPAEASAAPA----------PGVAAPEHHPKHVAVPDASDGGDGWPAKAGGA 676
Query: 1506 SPSSPGYSPTSPGY-SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPT 1564
+P++P +P +P + +P + T P P P A ++PS +
Sbjct: 677 APAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAAD 736
Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1624
P P P P P P P + + + P P+ A
Sbjct: 737 DPVPLPPEPDDPP-----DPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAP 791
Query: 1625 SP 1626
S
Sbjct: 792 SM 793
Score = 38.0 bits (89), Expect = 0.056
Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 11/120 (9%)
Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1665
+PA + S A + + A P + +P + + + + P +P +
Sbjct: 392 GAPAAAAPSAAAAAPAAA--PAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAP 449
Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
+PS P + P+ P +P + A+P +P +P
Sbjct: 450 AGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAP---------APPAAPAPAAAPAAPAAP 500
Score = 36.9 bits (86), Expect = 0.11
Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 2/108 (1%)
Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
+P+ + S + + + A +P + A P + A + + P +P +
Sbjct: 392 GAPAAAAPSAAAAAPAAAPAPAAAA--PAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAP 449
Query: 1652 YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
+P+ P + P+ +P + +P+ P +
Sbjct: 450 AGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAP 497
Score = 36.5 bits (85), Expect = 0.14
Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 4/122 (3%)
Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
A +P + A S + A + + + + +P+ +P P+ +P P+
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAP-QPAPAPAPAPAPPSPA 445
Query: 1665 AYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTS 1724
+P SP + P +P + + +P A +P++ PA+P +P +
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAA---PAAPAAPAA 502
Query: 1725 PN 1726
P
Sbjct: 503 PA 504
Score = 36.5 bits (85), Expect = 0.17
Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 8/127 (6%)
Query: 1676 TSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPT-SPNYSPTSSSY 1734
+P+ + S + + + P +A + ++P + A +P +P +P S +
Sbjct: 392 GAPAAAAPSAAAAAPAAAPAPAAAA-----PAAAAAPAPAAAPQPAPAPAPAPAPPSPAG 446
Query: 1735 SPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQ 1794
+ + P +PS+ ++P +P A +P+A +P++ + P
Sbjct: 447 NAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA--APA 504
Query: 1795 TNRDDST 1801
D +T
Sbjct: 505 GADDAAT 511
Score = 31.5 bits (72), Expect = 6.1
Identities = 23/128 (17%), Positives = 44/128 (34%), Gaps = 7/128 (5%)
Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPY 1720
A +P + S + + + + + + +P A +P+ PA P
Sbjct: 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPA---PAPPS 443
Query: 1721 SPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSA 1780
+ S +PS P+ + P A P +P+ P +P+A P+A
Sbjct: 444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPA-PAAAPAA---PAA 499
Query: 1781 PGYSPSST 1788
P +
Sbjct: 500 PAAPAGAD 507
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 41.1 bits (96), Expect = 0.005
Identities = 37/128 (28%), Positives = 53/128 (41%), Gaps = 9/128 (7%)
Query: 1513 SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTS 1572
+ P +P +P S +P P+S + + +P P A T S S TS + S
Sbjct: 80 ALPMPNLAPITPPSSEPTPA-PPSSESTATRTP--DPNQQALESTE-STSTTSADCN-DS 134
Query: 1573 PSYSPTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPAYSPT-SPAYSPTSPAYSPTS 1628
S + + S TS S S PS S SPS+ +S + + A SPT A +
Sbjct: 135 EQSSTPNLNSSDTSTSSSGALPSTSVVRGFSPSHISSSYRSTAQLNKAPSPTKSAEPTAA 194
Query: 1629 PSYSPTSP 1636
P P P
Sbjct: 195 PQAKPELP 202
Score = 40.3 bits (94), Expect = 0.009
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 12/126 (9%)
Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY-----SPTSPAYSPTSPA 1623
+ P+ +P +P S +P+ P+S S + +P P A + T+ A S
Sbjct: 80 ALPMPNLAPITPPSSEPTPA-PPSSESTATRTPD--PNQQALESTESTSTTSADCNDSEQ 136
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYSPT-SPAYSPTSPGYSPTSPS 1679
S + + S TS S S PS S SPS+ +S + + A SPT +P
Sbjct: 137 SSTPNLNSSDTSTSSSGALPSTSVVRGFSPSHISSSYRSTAQLNKAPSPTKSAEPTAAPQ 196
Query: 1680 YSPTSP 1685
P P
Sbjct: 197 AKPELP 202
Score = 39.5 bits (92), Expect = 0.018
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 9/128 (7%)
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
+ P +P +P S +P+ P+S S + +P P + T S S TS + +
Sbjct: 80 ALPMPNLAPITPPSSEPTPA-PPSSESTATRTPD--PNQQALESTE-STSTTSADCNDSE 135
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPT---SPSYSPTSPSYSPT-SPSYSPTSPSYSPTS 1663
+ +P + S TS + S PS S SPS+ +S + + + SPT + +
Sbjct: 136 QSSTPNLNS-SDTSTSSSGALPSTSVVRGFSPSHISSSYRSTAQLNKAPSPTKSAEPTAA 194
Query: 1664 PAYSPTSP 1671
P P P
Sbjct: 195 PQAKPELP 202
Score = 39.2 bits (91), Expect = 0.024
Identities = 48/253 (18%), Positives = 80/253 (31%), Gaps = 23/253 (9%)
Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
+ P+ +P +P S +P+ P+S S + +P P A T S TS + S
Sbjct: 80 ALPMPNLAPITPPSSEPTPA-PPSSESTATRTP--DPNQQALESTEST-STTSADCN-DS 134
Query: 1636 PSYSPTSPSYSPTSPSYSPTSPSYSPT---SPAYSPTSPGYSPT-SPSYSPTSPTYSPTS 1691
S + + S TS S S PS S SP++ +S + + + SPT +
Sbjct: 135 EQSSTPNLNSSDTSTSSSGALPSTSVVRGFSPSHISSSYRSTAQLNKAPSPTKSAEPTAA 194
Query: 1692 PSYNP-QSAKYSPSLAYSPSS---------PRLSPASPYSPTSPNYSPTSSSYSPTSPSY 1741
P P K SS R+S P + P P +
Sbjct: 195 PQAKPELPKKKQAMFTLGGSSGDDDEDSFEDRMSSQDPKRSSLPKPKPKMFQLGGSDELG 254
Query: 1742 SPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDST 1801
SP + + + + + + DD +
Sbjct: 255 KSLPSLMSPRKKTASF----KEQVVTRTFPERTSDDDEDAIETEEDDVDESAIEDDDDDS 310
Query: 1802 TKDDKNTKGDKSS 1814
+D + +SS
Sbjct: 311 DWEDSVEESGRSS 323
Score = 38.8 bits (90), Expect = 0.026
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 9/128 (7%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
+ P +P +P S +PA P+S S + +P P + T S S TS + S
Sbjct: 80 ALPMPNLAPITPPSSEPTPA-PPSSESTATRTP--DPNQQALESTE-STSTTSADCN-DS 134
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPT---SPAYSPTSPSYSPT-SPSYSPTSPSYSPTS 1649
S + + S TS + S P+ S SP++ +S + + + SPT + +
Sbjct: 135 EQSSTPNLNSSDTSTSSSGALPSTSVVRGFSPSHISSSYRSTAQLNKAPSPTKSAEPTAA 194
Query: 1650 PSYSPTSP 1657
P P P
Sbjct: 195 PQAKPELP 202
Score = 38.4 bits (89), Expect = 0.040
Identities = 34/129 (26%), Positives = 52/129 (40%), Gaps = 11/129 (8%)
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY-SPT 1613
+ P+ +P +P S +P+ P+S S + +P P + T S S TS
Sbjct: 80 ALPMPNLAPITPPSSEPTPA-PPSSESTATRTPD--PNQQALESTE-STSTTSADCNDSE 135
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYSPT-SPSYSPTSPAYSPT 1669
+ + S TS S S PS S SPS+ +S + + + SPT A
Sbjct: 136 QSSTPNLNS--SDTSTSSSGALPSTSVVRGFSPSHISSSYRSTAQLNKAPSPTKSAEPTA 193
Query: 1670 SPGYSPTSP 1678
+P P P
Sbjct: 194 APQAKPELP 202
Score = 36.1 bits (83), Expect = 0.20
Identities = 44/217 (20%), Positives = 67/217 (30%), Gaps = 13/217 (5%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1551
P + P + + S P +P S + T P T T + S+
Sbjct: 78 PLALPMPNLAPITPPSSEPTPAPPSSESTATRTP-DPNQQALESTESTSTTSADCNDSEQ 136
Query: 1552 PAYSPTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYSPT-SPSYSPTSPSYSPTS 1607
S + + S TS S S PS S SPS+ +S + + + SPT + +
Sbjct: 137 S--STPNLNSSDTSTSSSGALPSTSVVRGFSPSHISSSYRSTAQLNKAPSPTKSAEPTAA 194
Query: 1608 PAYSPTSPAYSPTSPAYSPTS-----PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
P P P +S S+ S P S P S
Sbjct: 195 PQAKPELPKKKQAMFTLGGSSGDDDEDSFEDRMSSQDPKRSSLPKPKPKMFQLGGSDELG 254
Query: 1663 SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
S SP S + T+ + S + + A
Sbjct: 255 KSLPSLMSPRKKTASFKEQVVTRTFPERT-SDDDEDA 290
Score = 34.5 bits (79), Expect = 0.53
Identities = 30/128 (23%), Positives = 46/128 (35%), Gaps = 10/128 (7%)
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
P + +P P+S S S + + P + T S S TS +
Sbjct: 74 KDLEPLALPMPNLAPITPPSSEPTPAPPSSESTATRTPDPNQQALESTE-STSTTSADCN 132
Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTSPTYSPT---SPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
+ + +P S TS S S P+ S SPS+ S + + L +P SP
Sbjct: 133 DSEQSSTPNLNS-SDTSTSSSGALPSTSVVRGFSPSHISSSYRSTAQLNKAP-----SPT 186
Query: 1718 SPYSPTSP 1725
PT+
Sbjct: 187 KSAEPTAA 194
Score = 30.7 bits (69), Expect = 8.5
Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
PT +P S S+ +P + S + T+ S S + S +S S
Sbjct: 95 EPTPAPPSSESTATRTPDPNQQALESTESTSTTSADCNDSEQSSTPNLNSSDTSTSSSGA 154
Query: 1551 SPAYSPT---SPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSP 1594
P+ S SPS+ +S + + + SPT + +P P P
Sbjct: 155 LPSTSVVRGFSPSHISSSYRSTAQLNKAPSPTKSAEPTAAPQAKPELP 202
>gnl|CDD|221787 pfam12815, CTD, Spt5 C-terminal nonapeptide repeat binding Spt4. The
C-terminal domain of the transcription elongation factor
protein Spt5 is necessary for binding to Spt4 to form the
functional complex that regulates early transcription
elongation by RNA polymerase II. The complex may be
involved in pre-mRNA processing through its association
with mRNA capping enzymes. This CTD domain carries a
regular nonapeptide repeat that can be present in up to
18 copies, as in S. pombe. The repeat has a
characteristic TPA motif.
Length = 112
Score = 38.2 bits (89), Expect = 0.005
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 11/95 (11%)
Query: 1491 SPTSSPGYSPSS-PGYSPSSPGYSPTSPGYSPTSPGYS----PTSPGYSPTSPTYSPSSP 1545
S T + G + P + + +P + G +P Y +P Y + S+P
Sbjct: 23 SRTPAYGGAGGRTPAWGGAG-NKTP-AFGDGSRTPAYGGESNGRTPAYGGSGSYLGASTP 80
Query: 1546 GYSPTSPAYSPTSPSY-SPTSPSYSPTSPSYSPTS 1579
G +PT +PT ++ +P Y S +PT
Sbjct: 81 GAAPTPAKSAPTPGAWGGAPTPGY---SADSAPTP 112
Score = 37.4 bits (87), Expect = 0.010
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 15/106 (14%)
Query: 1608 PAYSPTS----PAYSPTS---PAYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYS----P 1654
PAY+ ++ PA+ PAY + +P +P++ S P+Y
Sbjct: 5 PAYNSSAGSRTPAWGQGGSRTPAYG-GAGGRTPAWGGAGNKTPAFGDGSRTPAYGGESNG 63
Query: 1655 TSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTY-SPTSPSYNPQSA 1699
+P+Y + ++PG +PT +PT + +P Y+ SA
Sbjct: 64 RTPAYGGSGSYLGASTPGAAPTPAKSAPTPGAWGGAPTPGYSADSA 109
Score = 35.1 bits (81), Expect = 0.055
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 1482 SPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYS 1541
+P G + +P + +P Y S ++PG +PT P S +PG +PT
Sbjct: 45 TPAFGDGSRTPAYGGESNGRTPAYGGSGSYLGASTPGAAPT-PAKSAPTPGAWGGAPT-- 101
Query: 1542 PSSPGYSPTSPAYSPTS 1558
PGYS S +PT
Sbjct: 102 ---PGYSADS---APTP 112
Score = 34.7 bits (80), Expect = 0.091
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 1608 PAYSPT---SPAYSPTS--PAYS----PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
PA+ +PA+ S PAY +P+Y + ++P +PT +PT +
Sbjct: 36 PAWGGAGNKTPAFGDGSRTPAYGGESNGRTPAYGGSGSYLGASTPGAAPTPAKSAPTPGA 95
Query: 1659 Y-SPTSPAYSPTSPG 1672
+ +P YS S
Sbjct: 96 WGGAPTPGYSADSAP 110
Score = 33.2 bits (76), Expect = 0.29
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 18/112 (16%)
Query: 1503 PGYSPSS----PGYSPTS---PGYSPTSPGYSPTSPGYSPTSPTYSPSS--PGYS----P 1549
P Y+ S+ P + P Y + G +P G +P + S P Y
Sbjct: 5 PAYNSSAGSRTPAWGQGGSRTPAYG-GAGGRTPAWGGAGNKTPAFGDGSRTPAYGGESNG 63
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTS 1600
+PAY + ++P +PT +PT ++ +P Y S +PT
Sbjct: 64 RTPAYGGSGSYLGASTPGAAPTPAKSAPTPGAWGGAPTPGY---SADSAPTP 112
Score = 33.2 bits (76), Expect = 0.30
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 1552 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYS----P 1605
PAY+ ++ S +P +P+Y + +P +P++ S P+Y
Sbjct: 5 PAYNSSAGSRTPAWGQGGSRTPAYG-GAGGRTPAWGGAGNKTPAFGDGSRTPAYGGESNG 63
Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTS 1656
+PAY + ++P +PT +PT ++ +P Y S +PT
Sbjct: 64 RTPAYGGSGSYLGASTPGAAPTPAKSAPTPGAWGGAPTPGY---SADSAPTP 112
Score = 31.7 bits (72), Expect = 1.0
Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 25/124 (20%)
Query: 1615 PAYSPTS----PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PAYSP 1668
PAY+ ++ PA+ S T P+Y + +P +P++ S PAY
Sbjct: 5 PAYNSSAGSRTPAWGQGG---SRT-PAYG-GAGGRTPAWGGAGNKTPAFGDGSRTPAYGG 59
Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYS 1728
S G +P+Y + ++P A +P+ +P + +P YS
Sbjct: 60 ESNG---RTPAYGGSGSYLGASTPGA-----------APTPAKSAPTPGAWGGAPTPGYS 105
Query: 1729 PTSS 1732
S+
Sbjct: 106 ADSA 109
Score = 30.9 bits (70), Expect = 1.8
Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 8/108 (7%)
Query: 1664 PAYSPTS----PGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
PAY+ ++ P + S +P +P++ K +P+ +P S
Sbjct: 5 PAYNSSAGSRTPAWGQGG-SRTPAYGGAGGRTPAWGGAGNK-TPAFGDGSRTPAYGGESN 62
Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSS 1767
+P Y + S ++P +P+ +P+ G P YS S
Sbjct: 63 G--RTPAYGGSGSYLGASTPGAAPTPAKSAPTPGAWGGAPTPGYSADS 108
Score = 30.1 bits (68), Expect = 3.5
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 14/116 (12%)
Query: 1692 PSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSS--PTYS 1749
P+YN + +P A+ R +P + + +P++ S P Y
Sbjct: 5 PAYNSSAGSRTP--AWGQGGSRTPAYGGAGGRTPAWGGAGN----KTPAFGDGSRTPAYG 58
Query: 1750 PSSPYN---AGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTT 1802
S GG S+P +P+ S PG + TP + D + T
Sbjct: 59 GESNGRTPAYGGSGSYLGASTPGAAPTPAKSAPTPGAWGGAP---TPGYSADSAPT 111
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED.
Length = 590
Score = 41.2 bits (97), Expect = 0.006
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 1619 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1678
PTS + S S S S +S S P+S S P S +S ++P+ P S SP
Sbjct: 6 PTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSIL----PLPKLSSPSP 61
Query: 1679 SYSPTSPTYSPTSPSYNP 1696
P + +P NP
Sbjct: 62 PSVTLPPAATTQTPQLNP 79
Score = 40.1 bits (94), Expect = 0.012
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
PTS S S S S S +S S P+S S P S +S ++P+ P S SP
Sbjct: 6 PTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSIL----PLPKLSSPSP 61
Query: 1623 AYSPTSPSYSPTSPSYSP 1640
P+ + +P +P
Sbjct: 62 PSVTLPPAATTQTPQLNP 79
Score = 40.1 bits (94), Expect = 0.013
Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
PTS S S S S S +S S P+S S P S +S ++P+ P S SP
Sbjct: 6 PTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSIL----PLPKLSSPSP 61
Query: 1616 AYSPTSPAYSPTSPSYSP 1633
PA + +P +P
Sbjct: 62 PSVTLPPAATTQTPQLNP 79
Score = 39.3 bits (92), Expect = 0.022
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 1570 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP 1629
PTS S S S S S +S S P+S S P S +S ++P+ P S SP
Sbjct: 6 PTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSIL----PLPKLSSPSP 61
Query: 1630 SYSPTSPSYSPTSPSYSP 1647
P+ + +P +P
Sbjct: 62 PSVTLPPAATTQTPQLNP 79
Score = 38.9 bits (91), Expect = 0.025
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
PTS S S S S S +S + P+S + P S +S ++P+ P S SP
Sbjct: 6 PTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSIL----PLPKLSSPSP 61
Query: 1651 SYSPTSPSYSPTSPAYSP 1668
P+ + +P +P
Sbjct: 62 PSVTLPPAATTQTPQLNP 79
Score = 38.9 bits (91), Expect = 0.027
Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 1668 PTSPGYSPTSPSYSP---TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTS 1724
+S + S S++ +S + S S +P+ + PS + +P + P S S
Sbjct: 1 SSSSNPTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPS 60
Query: 1725 PNYSPTSSSYSPTSPSYSP 1743
P + + +P +P
Sbjct: 61 PPSVTLPPAATTQTPQLNP 79
Score = 38.1 bits (89), Expect = 0.042
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
PTS S S S S S +S S P+S S P S +S ++P+ P S SP
Sbjct: 6 PTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSIL----PLPKLSSPSP 61
Query: 1637 SYSPTSPSYSPTSPSYSP 1654
P+ + +P +P
Sbjct: 62 PSVTLPPAATTQTPQLNP 79
Score = 38.1 bits (89), Expect = 0.047
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 1640 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
PTS S S S S S +S S P+S + P S +S ++P+ S P
Sbjct: 6 PTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVT 65
Query: 1700 KYSPSLAYSPSSPRLSPA 1717
+ + +P+L+P
Sbjct: 66 LPPAA---TTQTPQLNPL 80
Score = 38.1 bits (89), Expect = 0.050
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
PTS + S +S S +S + P+S S P S +S ++P+ P S SP
Sbjct: 6 PTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSIL----PLPKLSSPSP 61
Query: 1595 SYSPTSPSYSPTSPAYSP 1612
P+ + +P +P
Sbjct: 62 PSVTLPPAATTQTPQLNP 79
Score = 37.8 bits (88), Expect = 0.066
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSP 1605
PTS + S S S S +S S P+S S P S +S ++P P S SP
Sbjct: 6 PTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSVT 65
Query: 1606 TSPAYSPTSPAYSP 1619
PA + +P +P
Sbjct: 66 LPPAATTQTPQLNP 79
Score = 37.4 bits (87), Expect = 0.082
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
PTS S S S + S +S + P+S + P S +S ++P+ P S SP
Sbjct: 6 PTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSIL----PLPKLSSPSP 61
Query: 1658 SYSPTSPAYSPTSPGYSP 1675
PA + +P +P
Sbjct: 62 PSVTLPPAATTQTPQLNP 79
Score = 37.0 bits (86), Expect = 0.098
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
PTS S S S S S +S S P+S S P S +S ++P+ P S SP
Sbjct: 6 PTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSIL----PLPKLSSPSP 61
Query: 1686 TYSPTSPSYNPQSAKYSP 1703
P+ Q+ + +P
Sbjct: 62 PSVTLPPAATTQTPQLNP 79
Score = 37.0 bits (86), Expect = 0.11
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 1521 PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1580
PTS S S S +S + PSS P S +S ++P+ P S SP
Sbjct: 6 PTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSIL----PLPKLSSPSP 61
Query: 1581 SYSPTSPSYSPTSPSYSP 1598
P+ + +P +P
Sbjct: 62 PSVTLPPAATTQTPQLNP 79
Score = 36.2 bits (84), Expect = 0.20
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA 1706
PTS S S S S S +S + P+S P S +S ++P+ S+ PS+
Sbjct: 6 PTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSILPLPKLSSPSPPSV- 64
Query: 1707 YSPSSPRLSPASP 1719
P + +P
Sbjct: 65 --TLPPAATTQTP 75
Score = 35.4 bits (82), Expect = 0.27
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
PTS + S S + S +S + P+S S P S +S ++P+ P S SP
Sbjct: 6 PTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSIL----PLPKLSSPSP 61
Query: 1665 AYSPTSPGYSPTSPSYSP 1682
P + +P +P
Sbjct: 62 PSVTLPPAATTQTPQLNP 79
Score = 35.4 bits (82), Expect = 0.29
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 1500 PSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP 1559
P+S S +S S +S P+S P S +S ++PS P S SP
Sbjct: 6 PTSRSQSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSIL----PLPKLSSPSP 61
Query: 1560 SYSPTSPSYSPTSPSYSP 1577
P+ + +P +P
Sbjct: 62 PSVTLPPAATTQTPQLNP 79
Score = 32.4 bits (74), Expect = 2.5
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
+S S SS PSS P S +S ++P+ P S SP
Sbjct: 11 QSHASSSSSSSSQSSPPSSTSPRPRRRKPSASSLLHTPSIL----PLPKLSSPSPPSVTL 66
Query: 1551 SPAYSPTSPSYSP 1563
PA + +P +P
Sbjct: 67 PPAATTQTPQLNP 79
Score = 32.4 bits (74), Expect = 2.7
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 1542 PSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1601
SS + S +++ S S S + S P+S S P S +S ++P+ P
Sbjct: 1 SSSSNPTSRSQSHAS-SSSSSSSQSS-PPSSTSPRPRRRKPSASSLLHTPS----ILPLP 54
Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSP 1626
S SP PA + +P +P
Sbjct: 55 KLSSPSPPSVTLPPAATTQTPQLNP 79
Score = 32.0 bits (73), Expect = 3.2
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
+S + + S S++ S S S + S P+S + P S +S ++P+ P
Sbjct: 1 SSSSNPTSRSQSHAS-SSSSSSSQSS-PPSSTSPRPRRRKPSASSLLHTPS----ILPLP 54
Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSP 1661
S SP P+ + +P +P
Sbjct: 55 KLSSPSPPSVTLPPAATTQTPQLNP 79
>gnl|CDD|115751 pfam07117, DUF1373, Protein of unknown function (DUF1373). This
family consists of several hypothetical proteins which
seem to be specific to Oryzias latipes (Japanese
ricefish). Members of this family are typically around
200 residues in length. The function of this family is
unknown.
Length = 210
Score = 39.4 bits (91), Expect = 0.008
Identities = 37/129 (28%), Positives = 51/129 (39%), Gaps = 14/129 (10%)
Query: 1678 PSYSPTSPTYS---PTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSY 1734
P+ P Y+ ++PSY S + S S P A + P Y
Sbjct: 23 DYQPPSMPPYTGQLQSAPSYEKPSGQSSGY----SSPPGYYSAGTNTAGGSGSPPMW--Y 76
Query: 1735 SPTSPSYSPSSPTY---SPSSPYNAGGG-NPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
S + P P+ PTY + SS Y + G + YS S Q S S G APG S Q
Sbjct: 77 SASYPEQEPAKPTYQRPAQSSGYGSYGSVDSSYSGSGSQQSGSQGAQSGAPG-SQHQVEQ 135
Query: 1791 YTPQTNRDD 1799
+ ++ DD
Sbjct: 136 ESWSSSSDD 144
Score = 37.5 bits (86), Expect = 0.037
Identities = 41/150 (27%), Positives = 59/150 (39%), Gaps = 15/150 (10%)
Query: 1486 GGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP 1545
GG + P S P Y+ G S+P Y S S GY + PGY ++ T +
Sbjct: 20 GGYDYQPPSMPPYT----GQLQSAPSYEKPSGQSS----GY-SSPPGYY-SAGTNTAGGS 69
Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
G P YS + P P P+Y P+ S SY SYS + S + + S
Sbjct: 70 GSPPM--WYSASYPEQEPAKPTYQ--RPAQSSGYGSYGSVDSSYSGSGSQQSGSQGAQS- 124
Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
+P S +S + P ++P S
Sbjct: 125 GAPGSQHQVEQESWSSSSDDEDEPEFTPVS 154
Score = 35.9 bits (82), Expect = 0.11
Identities = 35/134 (26%), Positives = 47/134 (35%), Gaps = 5/134 (3%)
Query: 1657 PSYSPTSPAYS---PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
P+ P Y+ ++P Y S S S S N SP + YS S P
Sbjct: 23 DYQPPSMPPYTGQLQSAPSYEKPSGQSSGYSSPPGYYSAGTNTAGGSGSPPMWYSASYPE 82
Query: 1714 LSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
PA P + P S SY SYS S S S +G + +S S
Sbjct: 83 QEPAKP-TYQRPAQSSGYGSYGSVDSSYSGSGSQQSGSQGAQSGAPGSQHQVEQESWSSS 141
Query: 1774 AGYSPSAPGYSPSS 1787
+ P ++P S
Sbjct: 142 SD-DEDEPEFTPVS 154
Score = 30.2 bits (67), Expect = 9.0
Identities = 44/184 (23%), Positives = 69/184 (37%), Gaps = 25/184 (13%)
Query: 1601 PSYSPTSPAYS---PTSPAYSPTSPAYS--PTSPSYSPTSPSYSPTSPS----YSPTSPS 1651
P+ P Y+ ++P+Y S S + P Y + + S S YS + P
Sbjct: 23 DYQPPSMPPYTGQLQSAPSYEKPSGQSSGYSSPPGYYSAGTNTAGGSGSPPMWYSASYPE 82
Query: 1652 YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS 1711
P P+Y + + S G +S S S + + S + S P S ++S SS
Sbjct: 83 QEPAKPTYQRPAQSSGYGSYGSVDSSYSGSGSQQSGSQGAQSGAPGSQHQVEQESWSSSS 142
Query: 1712 -----PRLSPASP-----YSPTSPNYSP-----TSSSYSPTSPSYSPSSPTYSPSSPYNA 1756
P +P S S T Y+ + Y+PT P P P + S +
Sbjct: 143 DDEDEPEFTPVSEEDQVYASKTRSRYNQKRLLFSQFRYTPTEPRV-PQEPVFPYPSKSHQ 201
Query: 1757 GGGN 1760
G G+
Sbjct: 202 GKGS 205
>gnl|CDD|216908 pfam02159, Oest_recep, Oestrogen receptor.
Length = 139
Score = 38.0 bits (88), Expect = 0.010
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 1508 SSPGYSPTSPGYSPTSPG-YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSP 1566
S+P YS S GY P + P S G + + PS + P+SP SP + P
Sbjct: 28 SAPVYSSASLGYYPAPEDVHGPPSLGGLQSLGSVPPSPLMFLPSSPQLSPFLHPHGQQVP 87
Query: 1567 SYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1595
Y P SP + + ++ Y + +
Sbjct: 88 YYLENEP--SPAAVRETSSTAFYRSSVDN 114
Score = 38.0 bits (88), Expect = 0.011
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 1511 GYSPTSPGYSPTSPGYSPTSPGYSPTSP-TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYS 1569
Y +P + +P YS S GY P + P S G + + P+ + P+SP S
Sbjct: 18 AYDFGAPTETS-APVYSSASLGYYPAPEDVHGPPSLGGLQSLGSVPPSPLMFLPSSPQLS 76
Query: 1570 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1608
P + P Y P SP + + ++ Y +
Sbjct: 77 PFLHPHGQQVPYYLENEP--SPAAVRETSSTAFYRSSVD 113
Score = 37.2 bits (86), Expect = 0.017
Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 1525 GYSPTSPGYSPTSPTYSPSSPGYSPTSP-AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1583
Y +P + +P YS +S GY P + P S + S P+ + P+SP S
Sbjct: 18 AYDFGAPTETS-APVYSSASLGYYPAPEDVHGPPSLGGLQSLGSVPPSPLMFLPSSPQLS 76
Query: 1584 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
P + P Y P SP + + ++ Y +
Sbjct: 77 PFLHPHGQQVPYYLENEP--SPAAVRETSSTAFYRSSVD 113
Score = 36.8 bits (85), Expect = 0.022
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 4/100 (4%)
Query: 1539 TYSPSSPGYSPTSPAYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
Y +P + +P YS S Y P + P S + S P+ + P+SP S
Sbjct: 18 AYDFGAPTETS-APVYSSASLGYYPAPEDVHGPPSLGGLQSLGSVPPSPLMFLPSSPQLS 76
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
P + P Y P SP + + ++ Y + +
Sbjct: 77 PFLHPHGQQVPYYLENEP--SPAAVRETSSTAFYRSSVDN 114
Score = 36.8 bits (85), Expect = 0.027
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 1580 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP-AYSPTSPSYSPTSPSY 1638
P S T ++ +Y +P+ + +P YS S Y P + P S + S
Sbjct: 3 PESSKTGAVFNYPEGAYDFGAPTETS-APVYSSASLGYYPAPEDVHGPPSLGGLQSLGSV 61
Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
P+ + P+SP SP + P Y P SP + + ++ Y + +
Sbjct: 62 PPSPLMFLPSSPQLSPFLHPHGQQVPYYLENEP--SPAAVRETSSTAFYRSSVDN 114
Score = 36.4 bits (84), Expect = 0.036
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Query: 1553 AYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
AY +P+ + +P YS S Y P + P S + S P+ + P+SP S
Sbjct: 18 AYDFGAPTETS-APVYSSASLGYYPAPEDVHGPPSLGGLQSLGSVPPSPLMFLPSSPQLS 76
Query: 1612 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
P + P Y P SP + + ++ Y + +
Sbjct: 77 PFLHPHGQQVPYYLENEP--SPAAVRETSSTAFYRSSVDN 114
Score = 36.1 bits (83), Expect = 0.043
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 1501 SSPGYSPSSPGYSPTSPG-YSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP 1559
S+P YS +S GY P + P S G + P+ + PSSP SP + P
Sbjct: 28 SAPVYSSASLGYYPAPEDVHGPPSLGGLQSLGSVPPSPLMFLPSSPQLSPFLHPHGQQVP 87
Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1588
Y P SP + + ++ Y + +
Sbjct: 88 YYLENEP--SPAAVRETSSTAFYRSSVDN 114
Score = 35.3 bits (81), Expect = 0.090
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSPTSP-AYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN 1695
+Y +P+ + +P YS S Y P + P S G + S P+ + P+SP +
Sbjct: 18 AYDFGAPTETS-APVYSSASLGYYPAPEDVHGPPSLGGLQSLGSVPPSPLMFLPSSPQLS 76
Query: 1696 PQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSS 1733
P + + Y + A + ++ Y + +
Sbjct: 77 PFLHPHGQQVPYYLENEPSPAAVRETSSTAFYRSSVDN 114
Score = 35.3 bits (81), Expect = 0.099
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 4/115 (3%)
Query: 1566 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-AYSPTSPAYSPTSPAY 1624
P S T ++ +Y +P+ + +P YS S Y P + P S + +
Sbjct: 3 PESSKTGAVFNYPEGAYDFGAPTETS-APVYSSASLGYYPAPEDVHGPPSLGGLQSLGSV 61
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
P+ + P+SP SP + P Y P SP + + ++ Y + +
Sbjct: 62 PPSPLMFLPSSPQLSPFLHPHGQQVPYYLENEP--SPAAVRETSSTAFYRSSVDN 114
Score = 34.9 bits (80), Expect = 0.13
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 4/114 (3%)
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPAYSPTSPAY 1617
P S T ++ +Y +P+ + +P YS S Y P + P S + +
Sbjct: 3 PESSKTGAVFNYPEGAYDFGAPTETS-APVYSSASLGYYPAPEDVHGPPSLGGLQSLGSV 61
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
P+ + P+SP SP + P Y P SP + + ++ Y +
Sbjct: 62 PPSPLMFLPSSPQLSPFLHPHGQQVPYYLENEP--SPAAVRETSSTAFYRSSVD 113
Score = 33.0 bits (75), Expect = 0.51
Identities = 31/133 (23%), Positives = 44/133 (33%), Gaps = 23/133 (17%)
Query: 1650 PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP-SYNPQSAKYSPSLAYS 1708
P S T ++ AY +P + +P YS S Y P + P S SL
Sbjct: 3 PESSKTGAVFNYPEGAYDFGAPTETS-APVYSSASLGYYPAPEDVHGPPSLGGLQSLGSV 61
Query: 1709 PSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP 1768
P SP + + P+SP SP + PY N +
Sbjct: 62 PPSPLM-------------------FLPSSPQLSPFLHPHGQQVPY--YLENEPSPAAVR 100
Query: 1769 QYSPSAGYSPSAP 1781
+ S +A Y S
Sbjct: 101 ETSSTAFYRSSVD 113
Score = 32.2 bits (73), Expect = 0.97
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
AY +P+ + +P YS S Y P + P S + + P+ + P+SP S
Sbjct: 18 AYDFGAPTETS-APVYSSASLGYYPAPEDVHGPPSLGGLQSLGSVPPSPLMFLPSSPQLS 76
Query: 1682 PTSPTYSPTSPSY---NPQSAKY---SPSLAYSPSSP 1712
P + P Y P A S + Y S
Sbjct: 77 PFLHPHGQQVPYYLENEPSPAAVRETSSTAFYRSSVD 113
Score = 30.7 bits (69), Expect = 3.4
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 17/94 (18%)
Query: 1489 AFSPTSSPGYSPSSPGYSPSSP--------------GYSPTSP-GYSPTSPGYSPTSPGY 1533
A + TS+P YS +S GY P+ G P SP + P+SP SP +
Sbjct: 23 APTETSAPVYSSASLGYYPAPEDVHGPPSLGGLQSLGSVPPSPLMFLPSSPQLSPFLHPH 82
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
P Y + P SP + + ++ Y + +
Sbjct: 83 GQQVPYYLENEP--SPAAVRETSSTAFYRSSVDN 114
>gnl|CDD|191602 pfam06752, E_Pc_C, Enhancer of Polycomb C-terminus. This family
represents the C-terminus of eukaryotic enhancer of
polycomb proteins, which have roles in heterochromatin
formation. This family contains several conserved motifs.
Length = 230
Score = 39.2 bits (91), Expect = 0.011
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 1629 PSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPAYSPTSPG--YSPTSPSYSPTSP 1685
P++ P+S S SPS S SP ++ T+ PA PG + PS+ T
Sbjct: 102 PTFLPSSGGSSAGSPSGSLVRSPGHTSTNHLVPALGPASPQVLPGNNICLSVPSHLSTVS 161
Query: 1686 TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTS 1724
SP + + P++ PS A ++ S +P+S
Sbjct: 162 AVSPLNVRHIPRTLAPVPSSALKLAAVANSRVPKVTPSS 200
Score = 35.7 bits (82), Expect = 0.16
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 1622 PAYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSP--AYSPTSPGYSPTSP 1678
P + P+S S SPS S SP ++ T+ P+ P + P + T
Sbjct: 102 PTFLPSSGGSSAGSPSGSLVRSPGHTSTNHLVPALGPASPQVLPGNNICLSVPSHLSTVS 161
Query: 1679 SYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS 1718
+ SP + + P + + P SA ++A S P+++P+S
Sbjct: 162 AVSPLNVRHIPRTLAPVPSSALKLAAVANSR-VPKVTPSS 200
Score = 35.0 bits (80), Expect = 0.26
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 1580 PSYSPTSPSYSPTSPSYS-PTSPSYSPTSPAYSPTSPAYSPTSP--AYSPTSPSYSPTSP 1636
P++ P+S S SPS S SP ++ T+ PA P + PS+ T
Sbjct: 102 PTFLPSSGGSSAGSPSGSLVRSPGHTSTNHLVPALGPASPQVLPGNNICLSVPSHLSTVS 161
Query: 1637 SYSPTSPSYSPTSPSYSPTS 1656
+ SP + + P + + P+S
Sbjct: 162 AVSPLNVRHIPRTLAPVPSS 181
Score = 33.4 bits (76), Expect = 0.90
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 1594 PSYSPTSPSYSPTSPAYS-PTSPAYSPTSPAYSPTSPSYSPTSP--SYSPTSPSYSPTSP 1650
P++ P+S S SP+ S SP ++ T+ P+ P + + PS+ T
Sbjct: 102 PTFLPSSGGSSAGSPSGSLVRSPGHTSTNHLVPALGPASPQVLPGNNICLSVPSHLSTVS 161
Query: 1651 SYSPTSPSYSPTSPAYSPTS 1670
+ SP + + P + A P+S
Sbjct: 162 AVSPLNVRHIPRTLAPVPSS 181
Score = 33.0 bits (75), Expect = 0.99
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 1587 PSYSPTSPSYSPTSPSYS-PTSPAYSPTSPAYSPTSPAYSPTSP--SYSPTSPSYSPTSP 1643
P++ P+S S SPS S SP ++ T+ PA P + + PS+ T
Sbjct: 102 PTFLPSSGGSSAGSPSGSLVRSPGHTSTNHLVPALGPASPQVLPGNNICLSVPSHLSTVS 161
Query: 1644 SYSPTSPSYSPTSPSYSPTS 1663
+ SP + + P + + P+S
Sbjct: 162 AVSPLNVRHIPRTLAPVPSS 181
Score = 32.7 bits (74), Expect = 1.2
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 1573 PSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPAYSPTSP--AYSPTSPAYSPTSP 1629
P++ P+S S SPS S SP ++ T+ PA P + P++ T
Sbjct: 102 PTFLPSSGGSSAGSPSGSLVRSPGHTSTNHLVPALGPASPQVLPGNNICLSVPSHLSTVS 161
Query: 1630 SYSPTSPSYSPTSPSYSPTS 1649
+ SP + + P + + P+S
Sbjct: 162 AVSPLNVRHIPRTLAPVPSS 181
Score = 32.7 bits (74), Expect = 1.4
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 1566 PSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSP--AYSPTSPAYSPTSP 1622
P++ P+S S SPS S SP ++ T+ P+ P + P++ T
Sbjct: 102 PTFLPSSGGSSAGSPSGSLVRSPGHTSTNHLVPALGPASPQVLPGNNICLSVPSHLSTVS 161
Query: 1623 AYSPTSPSYSPTSPSYSPTS 1642
A SP + + P + + P+S
Sbjct: 162 AVSPLNVRHIPRTLAPVPSS 181
Score = 32.7 bits (74), Expect = 1.4
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 1552 PAYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSP 1608
P + P+S S SPS S SP ++ T+ P+ P + + PS+ T
Sbjct: 102 PTFLPSSGGSSAGSPSGSLVRSPGHTSTNHLVPALGPASPQVLPGNNICLSVPSHLSTVS 161
Query: 1609 AYSPTSPAYSPTSPAYSPTS 1628
A SP + + P + A P+S
Sbjct: 162 AVSPLNVRHIPRTLAPVPSS 181
Score = 32.7 bits (74), Expect = 1.4
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 1538 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPS 1595
PT+ PSS G S SP+ S SP ++ T+ P+ P + + PS
Sbjct: 102 PTFLPSSGGSSAGSPSGS------LVRSPGHTSTNHLVPALGPASPQVLPGNNICLSVPS 155
Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTS 1621
+ T + SP + + P + A P+S
Sbjct: 156 HLSTVSAVSPLNVRHIPRTLAPVPSS 181
Score = 32.7 bits (74), Expect = 1.5
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 1643 PSYSPTSPSYSPTSPSYS-PTSPAYSPTS---PGYSPTSPSYSP------TSPTYSPTSP 1692
P++ P+S S SPS S SP ++ T+ P P SP P + P++ T
Sbjct: 102 PTFLPSSGGSSAGSPSGSLVRSPGHTSTNHLVPALGPASPQVLPGNNICLSVPSHLSTVS 161
Query: 1693 SYNPQSAKYSP-SLAYSPSSPRLSPASPYSPTSPNYSPTSS 1732
+ +P + ++ P +LA PSS L A+ + P +P+S+
Sbjct: 162 AVSPLNVRHIPRTLAPVPSSA-LKLAAVANSRVPKVTPSSA 201
Score = 32.3 bits (73), Expect = 1.7
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 1671 PGYSPTSPSYSPTSPTYS-PTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSP 1729
P + P+S S SP+ S SP + + P+SP++ P + + P++
Sbjct: 102 PTFLPSSGGSSAGSPSGSLVRSPGHTSTNHLVPAL---GPASPQVLPGNNICLSVPSHLS 158
Query: 1730 TSSSYSPTSPSYSPSSPTYSPSS 1752
T S+ SP + + P + PSS
Sbjct: 159 TVSAVSPLNVRHIPRTLAPVPSS 181
Score = 31.5 bits (71), Expect = 3.7
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 1503 PGYSPSSPGYSPTSP-GYSPTSPGYSPTSPGYSPTSPTYSPSSPG--YSPTSPAYSPTSP 1559
P + PSS G S SP G SPG++ T+ P PG + P++ T
Sbjct: 102 PTFLPSSGGSSAGSPSGSLVRSPGHTSTNHLVPALGPASPQVLPGNNICLSVPSHLSTVS 161
Query: 1560 SYSPTSPSYSPTSPSYSPTS 1579
+ SP + + P + + P+S
Sbjct: 162 AVSPLNVRHIPRTLAPVPSS 181
Score = 31.1 bits (70), Expect = 4.5
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 1490 FSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSP 1549
F P+S + S G SPG++ T+ P PG + S P +
Sbjct: 104 FLPSSGGSSAGSPSGSLVRSPGHTSTNHLVPALGPASPQVLPGNN-----ICLSVPSHLS 158
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTS 1572
T A SP + + P + + P+S
Sbjct: 159 TVSAVSPLNVRHIPRTLAPVPSS 181
Score = 30.7 bits (69), Expect = 6.5
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 1608 PAYSPTSPAYSPTSPAYS-PTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSP 1664
P + P+S S SP+ S SP ++ T+ P+ P + + PS+ T
Sbjct: 102 PTFLPSSGGSSAGSPSGSLVRSPGHTSTNHLVPALGPASPQVLPGNNICLSVPSHLSTVS 161
Query: 1665 AYSPTSPGYSPTSPSYSPTS 1684
A SP + + P + + P+S
Sbjct: 162 AVSPLNVRHIPRTLAPVPSS 181
Score = 30.3 bits (68), Expect = 6.9
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 1601 PSYSPTSPAYSPTSPAYS-PTSPAYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSP 1657
P++ P+S S SP+ S SP ++ T+ P+ P + + PS+ T
Sbjct: 102 PTFLPSSGGSSAGSPSGSLVRSPGHTSTNHLVPALGPASPQVLPGNNICLSVPSHLSTVS 161
Query: 1658 SYSPTSPAYSPTSPGYSPTS 1677
+ SP + + P + P+S
Sbjct: 162 AVSPLNVRHIPRTLAPVPSS 181
>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein. SOG2 proteins in
Saccharomyces cerevisiae are involved in cell separation
and cytokinesis.
Length = 419
Score = 40.1 bits (94), Expect = 0.011
Identities = 31/127 (24%), Positives = 44/127 (34%), Gaps = 5/127 (3%)
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 1677
P + + SP+S T S S +PT P+S S ++P +
Sbjct: 149 GPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGR-RPSSSPRSLSNP--TTLE 205
Query: 1678 PSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPT 1737
+ T P P N S S + + S S A+P S S +PTS S S
Sbjct: 206 SPSNLQVTTDVP-PPYSNGTSRS-STMSSSANLSIISSLATPRSGESFRSTPTSGSSSIN 263
Query: 1738 SPSYSPS 1744
S
Sbjct: 264 PVSGLDE 270
Score = 39.3 bits (92), Expect = 0.016
Identities = 31/128 (24%), Positives = 43/128 (33%), Gaps = 4/128 (3%)
Query: 1515 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSP-SYSPTSP 1573
+S G + S +P S P S +PT +SP S S +
Sbjct: 146 SSLGPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSV--TPTRGRRPSSSPRSLSNPTT 203
Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP 1633
SP++ + P S S T S + S S +P S S +PTS S S
Sbjct: 204 LESPSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPR-SGESFRSTPTSGSSSI 262
Query: 1634 TSPSYSPT 1641
S
Sbjct: 263 NPVSGLDE 270
Score = 39.3 bits (92), Expect = 0.019
Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 2/113 (1%)
Query: 1537 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPS 1595
+ T SPSS T + S +PT +SP S S + SP++ + P
Sbjct: 159 AVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLESPSNLQVTTDVPP 218
Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
S S T + + S S +P S S +PTS S S S
Sbjct: 219 PYSNGTSRSSTMSSSANLSIISSLATPR-SGESFRSTPTSGSSSINPVSGLDE 270
Score = 37.8 bits (88), Expect = 0.046
Identities = 31/127 (24%), Positives = 45/127 (35%), Gaps = 7/127 (5%)
Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT---SPAYSPTSPAYSPTSPSYS 1632
P + + SP+S T S + +PT P+ SP S S + S
Sbjct: 149 GPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSL--SNPTTLES 206
Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
P++ + P S S T S + S S +P S S +PTS + S P
Sbjct: 207 PSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPR-SGESFRSTPTSGSSSIN-P 264
Query: 1693 SYNPQSA 1699
A
Sbjct: 265 VSGLDEA 271
Score = 37.8 bits (88), Expect = 0.055
Identities = 31/125 (24%), Positives = 44/125 (35%), Gaps = 6/125 (4%)
Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT---SPAYSPTSPAYSPTSPAYS 1625
P + + SP+S T S S +PT P+ SP S S + S
Sbjct: 149 GPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSL--SNPTTLES 206
Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
P++ + P S S T S + S S +P S S +PTS S S
Sbjct: 207 PSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPR-SGESFRSTPTSGSSSINPV 265
Query: 1686 TYSPT 1690
+
Sbjct: 266 SGLDE 270
Score = 37.4 bits (87), Expect = 0.060
Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
Query: 1500 PSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG--YSPTSPAYSPT 1557
+ S +P S P S +PT G P+S S S+P SP++ +
Sbjct: 159 AVTASPSSMIARNTPISDRLRPRSV--TPTR-GRRPSSSPRSLSNPTTLESPSNLQVTTD 215
Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
P S S T S + S S +P S S +PTS S S
Sbjct: 216 VPPPYSNGTSRSSTMSSSANLSIISSLATPR-SGESFRSTPTSGSSSINP 264
Score = 37.4 bits (87), Expect = 0.066
Identities = 28/126 (22%), Positives = 42/126 (33%), Gaps = 10/126 (7%)
Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
P + + SP+S T S + +PT G P+S S ++PT
Sbjct: 149 GPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTR-GRRPSSSPRSLSNPT--TLE 205
Query: 1692 PSYNPQSAKYSPSLAY------SPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSS 1745
N Q P S S + + S +P S S +PTS S S +
Sbjct: 206 SPSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPR-SGESFRSTPTSGSSSINP 264
Query: 1746 PTYSPS 1751
+
Sbjct: 265 VSGLDE 270
Score = 37.4 bits (87), Expect = 0.075
Identities = 32/118 (27%), Positives = 43/118 (36%), Gaps = 6/118 (5%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT--YSPSSPGYS 1548
+ S +P S P S +PT G P+S S ++PT SPS+ +
Sbjct: 157 RDAVTASPSSMIARNTPISDRLRPRSV--TPTR-GRRPSSSPRSLSNPTTLESPSNLQVT 213
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
P S S T S + S S +P S S +PTS S S S
Sbjct: 214 TDVPPPYSNGTSRSSTMSSSANLSIISSLATPR-SGESFRSTPTSGSSSINPVSGLDE 270
Score = 37.0 bits (86), Expect = 0.096
Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 2/117 (1%)
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPAYSPT 1613
P + + SP+S T S S +PT +SP S S + SP+
Sbjct: 149 GPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLESPS 208
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
+ + P S S T S + S S +P S S +PTS + S
Sbjct: 209 NLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPR-SGESFRSTPTSGSSSINP 264
Score = 36.3 bits (84), Expect = 0.17
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTSPTYSPT---SPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
+ + S +P S P S T PT PS +P+S +P+ SPS+ +++
Sbjct: 159 AVTASPSSMIARNTPISDRLRPRSVT--PTRGRRPSSSPRSLS-NPTTLESPSNLQVTTD 215
Query: 1718 SPYSPTSPN-YSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP 1768
P ++ S T SS + S S ++P S G+ +P S
Sbjct: 216 VPPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRSTPTSGSSSINPVSG 267
Score = 35.5 bits (82), Expect = 0.24
Identities = 34/128 (26%), Positives = 46/128 (35%), Gaps = 11/128 (8%)
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPAYSPTSPAYS 1618
P + + SP+S T S S +PT PS SP S S + S
Sbjct: 149 GPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSL--SNPTTLES 206
Query: 1619 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1678
P++ + P S S T S + S S +P S S +PTS S
Sbjct: 207 PSNLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPR-SGESFRSTPTS-----GSS 260
Query: 1679 SYSPTSPT 1686
S +P S
Sbjct: 261 SINPVSGL 268
Score = 35.5 bits (82), Expect = 0.26
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 3/115 (2%)
Query: 1675 PTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP-NYSPTSSS 1733
+ S S +P S P+S +P+ PSS S ++P + SP N T+
Sbjct: 159 AVTASPSSMIARNTPISDRLRPRSV--TPTRGRRPSSSPRSLSNPTTLESPSNLQVTTDV 216
Query: 1734 YSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSST 1788
P S S SS S ++ S S + +P++G S P
Sbjct: 217 PPPYSNGTSRSSTMSSSANLSIISSLATPRSGESFRSTPTSGSSSINPVSGLDEA 271
Score = 35.5 bits (82), Expect = 0.28
Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 4/117 (3%)
Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP-SYSPTSPSYSPTSPSYSPTS 1649
+ S S +P S P S +PT +SP S S + SP++ +
Sbjct: 159 AVTASPSSMIARNTPISDRLRPRSV--TPTRGRRPSSSPRSLSNPTTLESPSNLQVTTDV 216
Query: 1650 PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA 1706
P S S T + + S S +P S S +PTS S +
Sbjct: 217 PPPYSNGTSRSSTMSSSANLSIISSLATPR-SGESFRSTPTSGSSSINPVSGLDEAE 272
Score = 35.5 bits (82), Expect = 0.29
Identities = 28/115 (24%), Positives = 40/115 (34%), Gaps = 5/115 (4%)
Query: 1466 LFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPG 1525
+ + + S + + +PT G PSS S S+P + T+
Sbjct: 159 AVTASPSSMIARNTPISDRLRPRSVTPTR--GRRPSSSPRSLSNPTTLESPSNLQVTTDV 216
Query: 1526 YSPTSPGYSPTSPTYS--PSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
P S G S +S S S S +P S S +PTS S S S
Sbjct: 217 PPPYSNGTSRSSTMSSSANLSIISSLATPR-SGESFRSTPTSGSSSINPVSGLDE 270
Score = 35.1 bits (81), Expect = 0.31
Identities = 27/115 (23%), Positives = 41/115 (35%), Gaps = 4/115 (3%)
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTS 1607
+ + S +P S P S + PT +SP S S + SP++ +
Sbjct: 159 AVTASPSSMIARNTPISDRLRPRSVT--PTRGRRPSSSPRSLSNPTTLESPSNLQVTTDV 216
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
P + S T + + S S +P S S +PTS S S S
Sbjct: 217 PPPYSNGTSRSSTMSSSANLSIISSLATPR-SGESFRSTPTSGSSSINPVSGLDE 270
Score = 35.1 bits (81), Expect = 0.33
Identities = 29/117 (24%), Positives = 42/117 (35%), Gaps = 2/117 (1%)
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPT 1606
P + + SP+S T S S +PT +SP S S + SP+
Sbjct: 149 GPPLQHRKRDAVTASPSSMIARNTPISDRLRPRSVTPTRGRRPSSSPRSLSNPTTLESPS 208
Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
+ + P + S T S + S S +P S S +PTS S S
Sbjct: 209 NLQVTTDVPPPYSNGTSRSSTMSSSANLSIISSLATPR-SGESFRSTPTSGSSSINP 264
Score = 33.6 bits (77), Expect = 0.95
Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 6/110 (5%)
Query: 1514 PTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS--YSPTSPSYSPT 1571
+ S +P S P S T + G P+S S ++P+ SP++ +
Sbjct: 159 AVTASPSSMIARNTPISDRLRPRSVT---PTRGRRPSSSPRSLSNPTTLESPSNLQVTTD 215
Query: 1572 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
P S S T S + S S +P S S +PTS + S
Sbjct: 216 VPPPYSNGTSRSSTMSSSANLSIISSLATPR-SGESFRSTPTSGSSSINP 264
Score = 32.0 bits (73), Expect = 3.0
Identities = 25/115 (21%), Positives = 37/115 (32%), Gaps = 4/115 (3%)
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTS 1656
+ S S +P S P S +PT +SP S S + SP++ +
Sbjct: 159 AVTASPSSMIARNTPISDRLRPRSV--TPTRGRRPSSSPRSLSNPTTLESPSNLQVTTDV 216
Query: 1657 PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS 1711
P + S T + S S +P S S P S S +
Sbjct: 217 PPPYSNGTSRSSTMSSSANLSIISSLATPR-SGESFRSTPTSGSSSINPVSGLDE 270
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 40.4 bits (94), Expect = 0.012
Identities = 67/324 (20%), Positives = 117/324 (36%), Gaps = 63/324 (19%)
Query: 1482 SPYVGGMAFSPTSSPGYSPSSPGYS-PSSPGYSPTSPGYSPTSP--GYSPTSPGYSPTSP 1538
S + G +P ++ G ++P + ++P + +PT+P YSPT+ G
Sbjct: 83 SSEMEGEMLAPQATVGRDEATPSIAMENTPSPPRRTAKITPTTPKNNYSPTAAGTERVKE 142
Query: 1539 TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS----PSYSPTS- 1593
+P +PS + Y TS SY+P S SPT
Sbjct: 143 D---------------TPATPSRALN--HYISTSG--RQRVKSYTPKPRGEVKSSSPTQT 183
Query: 1594 ----PSYSPTSP------SYSPTSPAYSPTSPAYSPTSPAY-SPTSPSYSPTSPSYSP-- 1640
Y+P SP SY+P++ P S +P + S + +Y + S
Sbjct: 184 REKVRKYTP-SPLGRMVNSYAPSTFMTMPRSHGITPRTTVKDSEITATYKMLETNPSKRT 242
Query: 1641 ---TSPS----YSPTSPSY--------SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
T+P+ + +P++ TSP + S +S ++
Sbjct: 243 AGKTTPTPLKGMTDNTPTFLTREVETDLLTSPRSVVEKNTLTTPRRVESNSSTNHWGLVG 302
Query: 1686 TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSS 1745
+ T+ PQ + A S +S + SP S ++++ +P S+
Sbjct: 303 KNNLTT----PQGTVLEHTPATSEGQVTISIMTGSSPAETKAS--TAAWKIRNPLSRTSA 356
Query: 1746 PTYSPSSPYNAG-GGNPDYSPSSP 1768
P +S G NP +PS+P
Sbjct: 357 PAVRIASATFRGLEKNPSTAPSTP 380
>gnl|CDD|219927 pfam08601, PAP1, Transcription factor PAP1. The transcription factor
Pap1 regulates antioxidant-gene transcription in response
to H2O2. This region is cysteine rich. Alkylation of
cysteine residues following treatment with a cysteine
alkylating agent can mask the accessibility of the
nuclear exporter Crm1, triggering nuclear accumulation
and Pap1 dependent transcriptional expression.
Length = 344
Score = 39.5 bits (92), Expect = 0.013
Identities = 34/145 (23%), Positives = 46/145 (31%), Gaps = 8/145 (5%)
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPAYS 1611
P +S S S S SP + TSPS + S + + A +
Sbjct: 42 CPIPKLAKNSSVSSPVPGLLNSTESNVSSPNNNPNGYTSPSSAAMNNKSNNRAVDPSANA 101
Query: 1612 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT-----SPSYSPTSPSYSPTSPAY 1666
+ SP S T + + S S SP+S S T S SP + SP A
Sbjct: 102 SAASTNSPNGLQSSATQYNSNDNSSSDSPSSGSDGFTNQLLSSLGTSPEPSTESPPQLAS 161
Query: 1667 SPTSPGYSPTSPSYSPTSPTYSPTS 1691
+ S S S T
Sbjct: 162 VNNFAAIRNNAESNSNVPSAASSTP 186
Score = 38.8 bits (90), Expect = 0.020
Identities = 37/172 (21%), Positives = 59/172 (34%), Gaps = 8/172 (4%)
Query: 1478 DAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTS 1537
D F + G + P + + P + +S SP + T S + +
Sbjct: 23 DFDFPKFCGKL---PGACGTKNCPIPKLAKNSSVSSPVPGLLNSTESNVSSPNNN---PN 76
Query: 1538 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
SPSS + S + + + + + SP S T + + S S SP+S S
Sbjct: 77 GYTSPSSAAMNNKSNNRAVDPSANASAASTNSPNGLQSSATQYNSNDNSSSDSPSSGSDG 136
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
T+ S S SP SP A + + S S + S T
Sbjct: 137 FTNQLLS--SLGTSPEPSTESPPQLASVNNFAAIRNNAESNSNVPSAASSTP 186
Score = 38.8 bits (90), Expect = 0.024
Identities = 32/151 (21%), Positives = 51/151 (33%), Gaps = 7/151 (4%)
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
P +S S S S SP + TSPS + + + +
Sbjct: 42 CPIPKLAKNSSVSSPVPGLLNSTESNVSSPNNNPNGYTSPSSAAMNNKSNN----RAVDP 97
Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS 1681
A + + + SP S T + + S S SP+S S T+ +S G SP + S
Sbjct: 98 SANASAASTNSPNGLQSSATQYNSNDNSSSDSPSSGSDGFTNQ--LLSSLGTSPEPSTES 155
Query: 1682 PTSPTYSPTSPSY-NPQSAKYSPSLAYSPSS 1711
P + N + + A S +
Sbjct: 156 PPQLASVNNFAAIRNNAESNSNVPSAASSTP 186
Score = 34.5 bits (79), Expect = 0.55
Identities = 27/145 (18%), Positives = 42/145 (28%), Gaps = 3/145 (2%)
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPAYS 1667
P +S + S S SP + TSPS + S + + A +
Sbjct: 42 CPIPKLAKNSSVSSPVPGLLNSTESNVSSPNNNPNGYTSPSSAAMNNKSNNRAVDPSANA 101
Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY 1727
+ SP S T + S S +P S + S S SP
Sbjct: 102 SAASTNSPNGLQSSATQYNSNDNSSSDSPSSGSDGFTNQLLSSLGTSPEPSTESPPQLAS 161
Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSS 1752
++ + S S S +
Sbjct: 162 VNNFAAIRNNAESNSNVPSAASSTP 186
Score = 33.8 bits (77), Expect = 0.79
Identities = 32/154 (20%), Positives = 49/154 (31%), Gaps = 12/154 (7%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYS 1590
P SS S S SP + TSPS + S + + + +
Sbjct: 42 CPIPKLAKNSSVSSPVPGLLNSTESNVSSPNNNPNGYTSPSSAAMNNKSNNRAVDPSANA 101
Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
+ + SP S T + S + SP+S + T+ S TSP S
Sbjct: 102 SAASTNSPNGLQSSATQYNSNDNSSSDSPSSGSDGFTNQLLSSLG-----TSPEPS---- 152
Query: 1651 SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
+ SP + A + S + S T
Sbjct: 153 TESPPQLASVNNFAAIRNNAESNSNVPSAASSTP 186
Score = 32.2 bits (73), Expect = 2.7
Identities = 33/144 (22%), Positives = 56/144 (38%), Gaps = 8/144 (5%)
Query: 1644 SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP 1703
+ S +SP + + S S + + SP+S + + S + + ++ SP
Sbjct: 50 NSSVSSPVPGLLNSTESNVSSPNNNPNGYTSPSSAAMNNKSNNRAVDPSANASAASTNSP 109
Query: 1704 SLAYSPSSPRLSPA-----SPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGG 1758
+ S ++ S SP S + + SS TSP S SP S A
Sbjct: 110 NGLQSSATQYNSNDNSSSDSPSSGSDGFTNQLLSSLG-TSPEPSTESPPQLASVNNFAAI 168
Query: 1759 GNPDYSPSSPQYSPSAGYSPSAPG 1782
N S S+ + S+ +P+ PG
Sbjct: 169 RNNAESNSNVPSAASS--TPNIPG 190
Score = 31.8 bits (72), Expect = 3.3
Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 10/152 (6%)
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT---SPSYSPTSPSYS 1646
P +S S S S SP + TSPS + S + + + +
Sbjct: 42 CPIPKLAKNSSVSSPVPGLLNSTESNVSSPNNNPNGYTSPSSAAMNNKSNNRAVDPSANA 101
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA 1706
+ + SP S T + S SP+S S T+ S S +P+ + SP
Sbjct: 102 SAASTNSPNGLQSSATQYNSNDNSSSDSPSSGSDGFTNQLLS--SLGTSPEPSTESPPQL 159
Query: 1707 YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTS 1738
S ++ + + + S S+ S T
Sbjct: 160 ASVNN-----FAAIRNNAESNSNVPSAASSTP 186
Score = 30.7 bits (69), Expect = 8.0
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 6/104 (5%)
Query: 1710 SSPRLSPASPYSPTSPNYSPTSSSYS-PTSPSYSPSSPTYSPSSPYNAGGGNPD-----Y 1763
+ P A S +SP +S+ S +SP+ +P+ T S+ N N
Sbjct: 41 NCPIPKLAKNSSVSSPVPGLLNSTESNVSSPNNNPNGYTSPSSAAMNNKSNNRAVDPSAN 100
Query: 1764 SPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKN 1807
+ ++ SP+ S + S ++S +P + D T + +
Sbjct: 101 ASAASTNSPNGLQSSATQYNSNDNSSSDSPSSGSDGFTNQLLSS 144
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins in
this family for which functions are known are components
of a multiprotein complex used for targeting nucleotide
excision repair to specific parts of the genome. In
humans, Rad23 complexes with the XPC protein. This family
is based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 378
Score = 39.5 bits (92), Expect = 0.013
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
P + + PA +PTS SP SP S S +P S + S T+ + S
Sbjct: 77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPS 136
Query: 1657 PSYSPTSPAYSPT 1669
S + + T
Sbjct: 137 TSVPSSGSDAAST 149
Score = 38.7 bits (90), Expect = 0.024
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Query: 1584 PTSPSYSPTSPSYSPTS-PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
P + + P+ +PTS P+ +P+ PA + + +P S + S T+ + S
Sbjct: 77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPS 136
Query: 1643 PSYSPTSPSYSPT 1655
S + + T
Sbjct: 137 TSVPSSGSDAAST 149
Score = 38.0 bits (88), Expect = 0.041
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS-PAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
P + + P+ +PTS SP SP S + +P S + S T+ + S
Sbjct: 77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPS 136
Query: 1650 PSYSPTSPSYSPT 1662
S + + T
Sbjct: 137 TSVPSSGSDAAST 149
Score = 38.0 bits (88), Expect = 0.046
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 1570 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPAYSPTSPAYSPTSPAYSPTS 1628
P + + P+ +PTS SP SP S S +P S + S T+ A S
Sbjct: 77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPS 136
Query: 1629 PSYSPTSPSYSPT 1641
S + + T
Sbjct: 137 TSVPSSGSDAAST 149
Score = 36.8 bits (85), Expect = 0.090
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
P + + P+ +PTS SP SP S + +P S + S T+ + S
Sbjct: 77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPS 136
Query: 1636 PSYSPTSPSYSPT 1648
S + + T
Sbjct: 137 TSVPSSGSDAAST 149
Score = 36.8 bits (85), Expect = 0.10
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
P + T + P +PTS SP SP S S +P S + S T+ + S
Sbjct: 77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPS 136
Query: 1594 PSYSPTSPSYSPT 1606
S + + T
Sbjct: 137 TSVPSSGSDAAST 149
Score = 36.8 bits (85), Expect = 0.11
Identities = 13/83 (15%), Positives = 24/83 (28%)
Query: 1613 TSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
+ P A +P+ +PT P SP+ ++ S A +
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPES 134
Query: 1673 YSPTSPSYSPTSPTYSPTSPSYN 1695
S + PS + +
Sbjct: 135 PSTSVPSSGSDAASTLVVGSERE 157
Score = 36.8 bits (85), Expect = 0.11
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
P + + P+ +PTS PT P SP+ ++ S + +
Sbjct: 77 PKTGTGKVAPPAATPTSA---PTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPE 133
Query: 1686 TYSPTSPSYNPQSA 1699
+ S + PS +A
Sbjct: 134 SPSTSVPSSGSDAA 147
Score = 36.4 bits (84), Expect = 0.13
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
P + + P+ +PTS PT P SP+ ++ S A +
Sbjct: 77 PKTGTGKVAPPAATPTSA---PTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPE 133
Query: 1616 AYSPTSPAYSPTSPS 1630
+ S + P+ + S
Sbjct: 134 SPSTSVPSSGSDAAS 148
Score = 36.4 bits (84), Expect = 0.13
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 8/80 (10%)
Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
P + + P+ +PTS PT P SP + S +P S + S T+
Sbjct: 77 PKTGTGKVAPPAATPTSA---PTPTPSPPASP---ASGMSAAPASAVEEKSPSEESATAT 130
Query: 1623 AYSPTSPSYSPTSPSYSPTS 1642
A P SPS S S S
Sbjct: 131 A--PESPSTSVPSSGSDAAS 148
Score = 36.4 bits (84), Expect = 0.14
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 1542 PSSPGYSPTSPAYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
P + PA +PTS SP SP S S +P S + S T+ + S
Sbjct: 77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPS 136
Query: 1601 PSYSPTSPAYSPT 1613
S + + T
Sbjct: 137 TSVPSSGSDAAST 149
Score = 36.0 bits (83), Expect = 0.18
Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 1522 TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1581
+ P +PT +P+ +P+ PA + S +P S + S T+ +
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTP---TPSPPASPASGMSAAPASAVEEKSPSEESATATA 131
Query: 1582 YSPTSPSYSPTSPSYSPT 1599
S S + + T
Sbjct: 132 PESPSTSVPSSGSDAAST 149
Score = 36.0 bits (83), Expect = 0.18
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 1585 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
+ P + +P+ +PT +P+ PA + + +P S + S T+
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTP---TPSPPASPASGMSAAPASAVEEKSPSEESATAT- 130
Query: 1645 YSPTSPSYSPTSPSYSPTS 1663
+P SPS S S S
Sbjct: 131 -APESPSTSVPSSGSDAAS 148
Score = 35.6 bits (82), Expect = 0.20
Identities = 13/74 (17%), Positives = 24/74 (32%)
Query: 1529 TSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1588
+ P ++P +PT P SP+ ++ S + + S
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPES 134
Query: 1589 YSPTSPSYSPTSPS 1602
S + PS + S
Sbjct: 135 PSTSVPSSGSDAAS 148
Score = 35.6 bits (82), Expect = 0.23
Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 1536 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1595
+ P +P +PT P SP + S +P S + S T+
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASP---ASGMSAAPASAVEEKSPSEESATAT- 130
Query: 1596 YSPTSPSYSPTSPAYSPTS 1614
+P SPS S S S
Sbjct: 131 -APESPSTSVPSSGSDAAS 148
Score = 35.6 bits (82), Expect = 0.24
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 1521 PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1580
P + P +PTS SP P SPA ++ S + +
Sbjct: 77 PKTGTGKVAPPAATPTSAPTPTPSP---PASPASGMSAAPASAVEEKSPSEESATATAPE 133
Query: 1581 SYSPTSPSYSPTSPS 1595
S S + PS + S
Sbjct: 134 SPSTSVPSSGSDAAS 148
Score = 35.6 bits (82), Expect = 0.24
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 1/66 (1%)
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS-PSYSPTSPTYSPTSPSYNPQSAKYSPSL 1705
P + + P+ +PTS SP SP S S +P S + + +
Sbjct: 77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPS 136
Query: 1706 AYSPSS 1711
PSS
Sbjct: 137 TSVPSS 142
Score = 35.3 bits (81), Expect = 0.29
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTS 1663
+ P A +P +PT P SP+ ++ S ++ + +P S
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPES 134
Query: 1664 PAYSPTSPGYSPTS 1677
P+ S S G S
Sbjct: 135 PSTSVPSSGSDAAS 148
Score = 34.9 bits (80), Expect = 0.42
Identities = 13/74 (17%), Positives = 23/74 (31%)
Query: 1515 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1574
+ P +P +PT P+SP ++ S + + S
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPES 134
Query: 1575 YSPTSPSYSPTSPS 1588
S + PS + S
Sbjct: 135 PSTSVPSSGSDAAS 148
Score = 34.5 bits (79), Expect = 0.47
Identities = 15/74 (20%), Positives = 22/74 (29%)
Query: 1508 SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
S P +P +PT P SP S+ S + + S
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPES 134
Query: 1568 YSPTSPSYSPTSPS 1581
S + PS + S
Sbjct: 135 PSTSVPSSGSDAAS 148
Score = 34.5 bits (79), Expect = 0.53
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 1640 PTSPSYSPTSPSYSPTS-PSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
P + + P+ +PTS P+ +P+ PA + +P S + S T+ + S
Sbjct: 77 PKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPS 136
Query: 1699 AKYSPSLAYSPSS 1711
PS +S
Sbjct: 137 T-SVPSSGSDAAS 148
Score = 34.5 bits (79), Expect = 0.58
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 1612 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
P + PA +PTS P+ +P+ P+ + S +P S + S T+
Sbjct: 77 PKTGTGKVAPPAATPTSA------PTPTPSPPASPASGMSAAPASAVEEKSPSEESATAT 130
Query: 1672 GYSPTSPSYSPTSPTYSPT 1690
S S + + T
Sbjct: 131 APESPSTSVPSSGSDAAST 149
Score = 34.1 bits (78), Expect = 0.67
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 1662 TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS 1721
+ P +P+ +PT P SP+ +A P+ A SP A+ +
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAA---PASAVEEKSPSEESATATA 131
Query: 1722 PTSPNYSPTSSSYSPTS 1738
P SP+ S SS S
Sbjct: 132 PESPSTSVPSSGSDAAS 148
Score = 32.6 bits (74), Expect = 2.2
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 4/77 (5%)
Query: 1682 PTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSY 1741
P + T P+ P SA +P+ + S A+P S S T+ +
Sbjct: 77 PKTGTGKVAPPAATPTSAP-TPTPSPPASPASGMSAAPASAVEEKSPSEE---SATATAP 132
Query: 1742 SPSSPTYSPSSPYNAGG 1758
S + S A
Sbjct: 133 ESPSTSVPSSGSDAAST 149
Score = 32.6 bits (74), Expect = 2.3
Identities = 15/74 (20%), Positives = 22/74 (29%)
Query: 1501 SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS 1560
S P +P +PT P SP ++ S A + S
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPES 134
Query: 1561 YSPTSPSYSPTSPS 1574
S + PS + S
Sbjct: 135 PSTSVPSSGSDAAS 148
Score = 32.2 bits (73), Expect = 2.6
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 1485 VGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSS 1544
V A +PTS+P +PS P S +P S + S T+ +P SP+ S S
Sbjct: 84 VAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATAT--APESPSTSVPS 141
Query: 1545 PGYSPTS 1551
G S
Sbjct: 142 SGSDAAS 148
Score = 32.2 bits (73), Expect = 3.1
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1553
S P ++P +PT +P+ P + +P S S S T+ A
Sbjct: 75 SKPKTGTGKVAPPAATPTSAPTP---TPSPPASPASGMSAAPASAVEEKSPSEESATATA 131
Query: 1554 YSPTSPSYSPTSPSYSPTS 1572
P SPS S S S
Sbjct: 132 --PESPSTSVPSSGSDAAS 148
Score = 31.8 bits (72), Expect = 3.8
Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 1716 PASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAG 1775
A+P S +P SP +S + S +P+S SP + S ++ +
Sbjct: 88 AATPTSAPTPTPSPPASP--ASGMSAAPAS-AVEEKSP-------SEESATATAPESPST 137
Query: 1776 YSPSAPGYSPSS 1787
PS+ + S+
Sbjct: 138 SVPSSGSDAAST 149
Score = 30.6 bits (69), Expect = 8.5
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 1488 MAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
M P + G S+P +P+ P + +P S + S ++
Sbjct: 73 MVSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATAT-- 130
Query: 1548 SPTSPAYSPTSPSYSPTS 1565
+P SP+ S S S
Sbjct: 131 APESPSTSVPSSGSDAAS 148
>gnl|CDD|113760 pfam05001, RNA_pol_Rpb1_R, RNA polymerase Rpb1 C-terminal repeat.
The repetitive C-terminal domain (CTD) of Rpb1 (RNA
polymerase Pol II) plays a critical role in the
regulation of gene expression. The activity of the CTD is
dependent on its state of phosphorylation.
Length = 14
Score = 34.6 bits (81), Expect = 0.013
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 1513 SPTSPGYSPTSPGY 1526
SPTSPGYSPTSP Y
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 34.6 bits (81), Expect = 0.013
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 1520 SPTSPGYSPTSPGY 1533
SPTSPGYSPTSP Y
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 34.2 bits (80), Expect = 0.015
Identities = 14/14 (100%), Positives = 14/14 (100%)
Query: 1667 SPTSPGYSPTSPSY 1680
SPTSPGYSPTSPSY
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 34.2 bits (80), Expect = 0.015
Identities = 12/14 (85%), Positives = 12/14 (85%)
Query: 1660 SPTSPAYSPTSPGY 1673
SPTSP YSPTSP Y
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 34.2 bits (80), Expect = 0.016
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 1548 SPTSPAYSPTSPSY 1561
SPTSP YSPTSPSY
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 34.2 bits (80), Expect = 0.016
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 1618 SPTSPAYSPTSPSY 1631
SPTSP YSPTSPSY
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 34.2 bits (80), Expect = 0.016
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 1604 SPTSPAYSPTSPAY 1617
SPTSP YSPTSP+Y
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 34.2 bits (80), Expect = 0.016
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 1611 SPTSPAYSPTSPAY 1624
SPTSP YSPTSP+Y
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.8 bits (79), Expect = 0.020
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 1681 SPTSPTYSPTSPSY 1694
SPTSP YSPTSPSY
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.8 bits (79), Expect = 0.025
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 1506 SPSSPGYSPTSPGY 1519
SP+SPGYSPTSP Y
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.8 bits (79), Expect = 0.025
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 1555 SPTSPSYSPTSPSY 1568
SPTSP YSPTSPSY
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.8 bits (79), Expect = 0.025
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 1562 SPTSPSYSPTSPSY 1575
SPTSP YSPTSPSY
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.8 bits (79), Expect = 0.025
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 1569 SPTSPSYSPTSPSY 1582
SPTSP YSPTSPSY
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.8 bits (79), Expect = 0.025
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 1576 SPTSPSYSPTSPSY 1589
SPTSP YSPTSPSY
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.8 bits (79), Expect = 0.025
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 1583 SPTSPSYSPTSPSY 1596
SPTSP YSPTSPSY
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.8 bits (79), Expect = 0.025
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 1590 SPTSPSYSPTSPSY 1603
SPTSP YSPTSPSY
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.8 bits (79), Expect = 0.025
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 1625 SPTSPSYSPTSPSY 1638
SPTSP YSPTSPSY
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.8 bits (79), Expect = 0.025
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 1632 SPTSPSYSPTSPSY 1645
SPTSP YSPTSPSY
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.8 bits (79), Expect = 0.025
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 1639 SPTSPSYSPTSPSY 1652
SPTSP YSPTSPSY
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.8 bits (79), Expect = 0.025
Identities = 13/14 (92%), Positives = 13/14 (92%)
Query: 1646 SPTSPSYSPTSPSY 1659
SPTSP YSPTSPSY
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.8 bits (79), Expect = 0.025
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 1597 SPTSPSYSPTSPAY 1610
SPTSP YSPTSP+Y
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.8 bits (79), Expect = 0.025
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 1653 SPTSPSYSPTSPAY 1666
SPTSP YSPTSP+Y
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.8 bits (79), Expect = 0.025
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 1527 SPTSPGYSPTSPTY 1540
SPTSPGYSPTSP+Y
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.4 bits (78), Expect = 0.027
Identities = 12/14 (85%), Positives = 14/14 (100%)
Query: 1541 SPSSPGYSPTSPAY 1554
SP+SPGYSPTSP+Y
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.1 bits (77), Expect = 0.042
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 1534 SPTSPTYSPSSPGY 1547
SPTSP YSP+SP Y
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 33.1 bits (77), Expect = 0.043
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 1674 SPTSPSYSPTSPTY 1687
SPTSP YSPTSP+Y
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 32.7 bits (76), Expect = 0.056
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 1499 SPSSPGYSPSSPGY 1512
SP+SPGYSP+SP Y
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 31.9 bits (74), Expect = 0.096
Identities = 11/14 (78%), Positives = 13/14 (92%)
Query: 1735 SPTSPSYSPSSPTY 1748
SPTSP YSP+SP+Y
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 30.7 bits (71), Expect = 0.24
Identities = 12/14 (85%), Positives = 12/14 (85%)
Query: 1728 SPTSSSYSPTSPSY 1741
SPTS YSPTSPSY
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 30.0 bits (69), Expect = 0.57
Identities = 12/14 (85%), Positives = 12/14 (85%)
Query: 1721 SPTSPNYSPTSSSY 1734
SPTSP YSPTS SY
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 28.8 bits (66), Expect = 1.3
Identities = 12/15 (80%), Positives = 13/15 (86%), Gaps = 1/15 (6%)
Query: 1491 SPTSSPGYSPSSPGY 1505
SPTS PGYSP+SP Y
Sbjct: 1 SPTS-PGYSPTSPSY 14
Score = 28.8 bits (66), Expect = 1.5
Identities = 9/12 (75%), Positives = 11/12 (91%)
Query: 1742 SPSSPTYSPSSP 1753
SP+SP YSP+SP
Sbjct: 1 SPTSPGYSPTSP 12
Score = 26.9 bits (61), Expect = 6.4
Identities = 11/14 (78%), Positives = 12/14 (85%), Gaps = 1/14 (7%)
Query: 1715 SPASP-YSPTSPNY 1727
SP SP YSPTSP+Y
Sbjct: 1 SPTSPGYSPTSPSY 14
Score = 26.5 bits (60), Expect = 9.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 1688 SPTSPSYNPQSAKY 1701
SPTSP Y+P S Y
Sbjct: 1 SPTSPGYSPTSPSY 14
>gnl|CDD|234428 TIGR03979, His_Ser_Rich, His-Xaa-Ser repeat protein HxsA. Members of
this protein share two defining regions. One is a
histidine/serine-rich cluster, typically
H-R-S-H-S-S-H-R-S-H-S-S-H. Members are found always in
the context of a pair of radical SAM proteins, HxsB and
HxsC, and a fourth protein HxsD. The system is predicted
to perform peptide modifications, likely in the
His-Xaa-Ser region, to produce some uncharacterized
natural product.
Length = 186
Score = 38.3 bits (89), Expect = 0.014
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSP 1689
S+S S YS SYS PS ++ SY SP+YSP+ + S T+
Sbjct: 61 SHSSHSSHYSGAGGSYSV--PSGDTSTYSYPVPSPSYSPSP---GSSIQSLPSTTGVRPQ 115
Query: 1690 TSPS 1693
+S
Sbjct: 116 SSAE 119
Score = 37.2 bits (86), Expect = 0.033
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1591
G+ S S SS + S + PS ++ SY SPSYSP+ + S
Sbjct: 52 GHRSHSSHRSHSSHSSHYSGAGGSYSVPSGDTSTYSYPVPSPSYSPSP---GSSIQSLPS 108
Query: 1592 TSPSYSPTSPS 1602
T+ +S
Sbjct: 109 TTGVRPQSSAE 119
Score = 36.8 bits (85), Expect = 0.044
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 1525 GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1584
G+ S S +S + S G S + P+ ++ SY SPSYSP+ + S
Sbjct: 52 GHRSHSSHRSHSSHSSHYSGAGGSYSVPSGDTSTYSYPVPSPSYSPSP---GSSIQSLPS 108
Query: 1585 TSPSYSPTSPS 1595
T+ +S
Sbjct: 109 TTGVRPQSSAE 119
Score = 36.8 bits (85), Expect = 0.045
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
S+S S YS SYS PS ++ SY SPSYSP+ S + P+ + P
Sbjct: 61 SHSSHSSHYSGAGGSYSV--PSGDTSTYSYPVPSPSYSPSPGSSIQSLPSTTGVRP 114
Score = 36.8 bits (85), Expect = 0.052
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 1581 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
S+S S YS SYS PS ++ +Y SP+YSP+ + S T+
Sbjct: 61 SHSSHSSHYSGAGGSYSV--PSGDTSTYSYPVPSPSYSPSP---GSSIQSLPSTTGVRPQ 115
Query: 1641 TSPS 1644
+S
Sbjct: 116 SSAE 119
Score = 36.0 bits (83), Expect = 0.080
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
G+ S S +S S + S + PS ++ SY SPSYSP+ + S
Sbjct: 52 GHRSHSSHRSHSSHSSHYSGAGGSYSVPSGDTSTYSYPVPSPSYSPSP---GSSIQSLPS 108
Query: 1606 TSPAYSPTS 1614
T+ +S
Sbjct: 109 TTGVRPQSS 117
Score = 35.6 bits (82), Expect = 0.11
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP 1633
S+S S YS SYS PS ++ SY SP+YSP+ + + T+
Sbjct: 61 SHSSHSSHYSGAGGSYSV--PSGDTSTYSYPVPSPSYSPSP---GSSIQSLPSTTGVRPQ 115
Query: 1634 TSPS 1637
+S
Sbjct: 116 SSAE 119
Score = 35.6 bits (82), Expect = 0.12
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 1567 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP 1626
S+S S YS SYS PS ++ SY SPSYSP+ + + T+
Sbjct: 61 SHSSHSSHYSGAGGSYSV--PSGDTSTYSYPVPSPSYSPSP---GSSIQSLPSTTGVRPQ 115
Query: 1627 TSPS 1630
+S
Sbjct: 116 SSAE 119
Score = 35.2 bits (81), Expect = 0.15
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
S+S S YS SYS P+ ++ +Y SP+YSP+ + S T+
Sbjct: 61 SHSSHSSHYSGAGGSYSV--PSGDTSTYSYPVPSPSYSPSP---GSSIQSLPSTTGVRPQ 115
Query: 1648 TSPS 1651
+S
Sbjct: 116 SSAE 119
Score = 34.8 bits (80), Expect = 0.23
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1654
S+S S YS +YS P+ ++ +Y SPSYSP+ + S T+
Sbjct: 61 SHSSHSSHYSGAGGSYSV--PSGDTSTYSYPVPSPSYSPSP---GSSIQSLPSTTGVRPQ 115
Query: 1655 TSPS 1658
+S
Sbjct: 116 SSAE 119
Score = 34.5 bits (79), Expect = 0.29
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
S+S S YS +YS P+ ++ SY SPSYSP+ + S T+
Sbjct: 61 SHSSHSSHYSGAGGSYSV--PSGDTSTYSYPVPSPSYSPSP---GSSIQSLPSTTGVRPQ 115
Query: 1662 TS 1663
+S
Sbjct: 116 SS 117
Score = 34.1 bits (78), Expect = 0.34
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 1609 AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
+ S S +S + + S + PS ++ SY SPSYSP+ S + P+ +
Sbjct: 52 GHRSHSSHRSHSSHSSHYSGAGGSYSVPSGDTSTYSYPVPSPSYSPSPGSSIQSLPSTTG 111
Query: 1669 TSP 1671
P
Sbjct: 112 VRP 114
Score = 34.1 bits (78), Expect = 0.36
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 1518 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1577
G+ S S +S + S S P ++ +Y SPSYSP+ + S
Sbjct: 52 GHRSHSSHRSHSSHSSHYSGAGGSYSVPSGDTSTYSYPVPSPSYSPSP---GSSIQSLPS 108
Query: 1578 TSPSYSPTSPS 1588
T+ +S
Sbjct: 109 TTGVRPQSSAE 119
Score = 33.7 bits (77), Expect = 0.46
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 1511 GYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSP 1570
G+ S S +S + G S + P+ S+ Y SP+YSP+ + S
Sbjct: 52 GHRSHSSHRSHSSHSSHYSGAGGSYSVPSGDTSTYSYPVPSPSYSPSP---GSSIQSLPS 108
Query: 1571 TSPSYSPTSPS 1581
T+ +S
Sbjct: 109 TTGVRPQSSAE 119
Score = 33.3 bits (76), Expect = 0.72
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 1504 GYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSP 1563
G+ S S +S + G S + P ++ +Y SP YSP+ + S
Sbjct: 52 GHRSHSSHRSHSSHSSHYSGAGGSYSVPSGDTSTYSYPVPSPSYSPSP---GSSIQSLPS 108
Query: 1564 TSPSYSPTSPS 1574
T+ +S
Sbjct: 109 TTGVRPQSSAE 119
Score = 33.3 bits (76), Expect = 0.73
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 1497 GYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSP 1556
G+ S S SS + G S + P ++ Y SP+YSPS + +
Sbjct: 52 GHRSHSSHRSHSSHSSHYSGAGGSYSVPSGDTSTYSYPVPSPSYSPSP---GSSIQSLPS 108
Query: 1557 TSPSYSPTSPS 1567
T+ +S
Sbjct: 109 TTGVRPQSSAE 119
Score = 31.8 bits (72), Expect = 1.9
Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSS 1544
S S G S S P S+ Y SP YSP+ + T+ SS
Sbjct: 67 SHYSGAGGSYSVPSGDTSTYSYPVPSPSYSPSP---GSSIQSLPSTTGVRPQSS 117
Score = 31.4 bits (71), Expect = 2.5
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 1644 SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP 1703
S+S S YS SYS P+ ++ Y SPSYSP+ + S +
Sbjct: 61 SHSSHSSHYSGAGGSYSV--PSGDTSTYSYPVPSPSYSPSP---GSSIQSLPSTTGVRPQ 115
Query: 1704 S 1704
S
Sbjct: 116 S 116
Score = 31.0 bits (70), Expect = 3.9
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT 1550
S +S +S S YS + YS P ++ Y SP YSP+ + S P +
Sbjct: 55 SHSSHRSHSSHSSHYSGAGGSYSV--PSGDTSTYSYPVPSPSYSPSPGSSIQSLPSTTGV 112
Query: 1551 SP 1552
P
Sbjct: 113 RP 114
Score = 30.2 bits (68), Expect = 6.8
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 1679 SYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTS 1738
S+S S YS SY S + YS P S + + + T+ +S
Sbjct: 61 SHSSHSSHYSGAGGSY---SVPSGDTSTYSYPVPSPSYSPSPGSSIQSLPSTTGVRPQSS 117
Query: 1739 PS 1740
Sbjct: 118 AE 119
>gnl|CDD|218539 pfam05287, PMG, PMG protein. This family consists of several mouse
anagen-specific protein mKAP13 (PMG1 and PMG2). PMG1 and
2 contain characteristic repeats reminiscent of the
keratin-associated proteins (KAPs). Both genes are
expressed in growing hair follicles in skin as well as in
sebaceous and eccrine sweat glands. Interestingly,
expression is also detected in the mammary epithelium
where it is limited to the onset of the pubertal growth
phase and is independent of ovarian hormones. Their
broad, developmentally controlled expression pattern,
together with their unique amino acid composition,
demonstrate that pmg-1 and pmg-2 constitute a novel KAP
gene family participating in the differentiation of all
epithelial cells forming the epidermal appendages.
Length = 175
Score = 38.2 bits (89), Expect = 0.015
Identities = 39/179 (21%), Positives = 50/179 (27%), Gaps = 26/179 (14%)
Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY---------S 1583
Y+ S +S S P S + + S SPS S
Sbjct: 3 YNCCSGNFSSRSLRGHLHYPVSSCGTSYPTNLVCSTVLCSPSSCQLGSSLLDGCQETCGE 62
Query: 1584 PTS---PSYSPTSPSYSPT-SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS 1639
PTS S + SP Y P + S SP S + S + S
Sbjct: 63 PTSCQTTSCETSPCVPSPCQVSCYRPRTSCVS------SPCQTTSSGSLGFVSSSCQSLG 116
Query: 1640 PTSPSYSPTS--PSYSPTSPSYSPTSPAYSPTSPGYSPT---SPSYSPTSPTYSPTSPS 1693
S S P S S + S S P+ S SY Y P+ S
Sbjct: 117 YGSRSCQPLGCGSSGFRPLGCGSKGFQSLSYGSSFCRPSYLSSRSYQS--SCYRPSCGS 173
Score = 34.8 bits (80), Expect = 0.19
Identities = 40/182 (21%), Positives = 53/182 (29%), Gaps = 29/182 (15%)
Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY-------- 1638
SY+ S ++S S P S + + + SPS S
Sbjct: 1 MSYNCCSGNFSSRSLRGHLHYPVSSCGTSYPTNLVCSTVLCSPSSCQLGSSLLDGCQETC 60
Query: 1639 -SPTS---PSYSPTSPSYSPT-SPSYSP-TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSP 1692
PTS S + SP Y P TS SP S + S + + S
Sbjct: 61 GEPTSCQTTSCETSPCVPSPCQVSCYRPRTSCVSSPCQTTSSGSLGFVSSSCQSLGYGSR 120
Query: 1693 SYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPT---SPSYSPSS--PT 1747
S P S P S + S SS P+ S SY S P+
Sbjct: 121 SCQPLGCG----------SSGFRPLGCGSKGFQSLSYGSSFCRPSYLSSRSYQSSCYRPS 170
Query: 1748 YS 1749
Sbjct: 171 CG 172
Score = 34.4 bits (79), Expect = 0.28
Identities = 34/166 (20%), Positives = 51/166 (30%), Gaps = 17/166 (10%)
Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS-YNPQSAKY 1701
SY+ S ++S S P S + + S SP+ S +
Sbjct: 1 MSYNCCSGNFSSRSLRGHLHYPVSSCGTSYPTNLVCSTVLCSPSSCQLGSSLLDGCQETC 60
Query: 1702 SPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSY-SPTSPSYSPSSPTYSPSSPYNAGGGN 1760
+ +S SP P Y P +S SP + S S + SS + G G+
Sbjct: 61 GEPTSCQTTSCETSPCVPSPCQVSCYRPRTSCVSSPCQTTSS-GSLGFVSSSCQSLGYGS 119
Query: 1761 PDYSPS------------SPQYSPSAGYSPSA--PGYSPSSTSQYT 1792
P + S Y S P Y S + Q +
Sbjct: 120 RSCQPLGCGSSGFRPLGCGSKGFQSLSYGSSFCRPSYLSSRSYQSS 165
Score = 31.3 bits (71), Expect = 2.5
Identities = 40/173 (23%), Positives = 54/173 (31%), Gaps = 23/173 (13%)
Query: 1552 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-------- 1603
+Y+ S ++S S P S + + S SPS S
Sbjct: 1 MSYNCCSGNFSSRSLRGHLHYPVSSCGTSYPTNLVCSTVLCSPSSCQLGSSLLDGCQETC 60
Query: 1604 -SPTS---PAYSPTSPAYSPT-SPAYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSP 1657
PTS + + SP Y P + SP + S + S + S S
Sbjct: 61 GEPTSCQTTSCETSPCVPSPCQVSCYRPRTSCVSSPCQTTSSGSLGFVSSSCQSLGYGSR 120
Query: 1658 SYSPT---SPAYSPTSPGYSPTSPSYSPTSPTYSPT---SPSYNPQSAKYSPS 1704
S P S + P G S S S S P+ S SY Y PS
Sbjct: 121 SCQPLGCGSSGFRPLGCG-SKGFQSLSYGSSFCRPSYLSSRSYQSSC--YRPS 170
>gnl|CDD|152349 pfam11914, DUF3432, Domain of unknown function (DUF3432). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is about 100
amino acids in length. This domain is found associated
with pfam00096. This domain has two conserved sequence
motifs: YPSPV and PSP.
Length = 100
Score = 36.3 bits (83), Expect = 0.018
Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1553 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
A ++ S + + S SP S SP + SY SP SYS S P+ S SP+ +
Sbjct: 4 AAPVSTASPNISIYSSSPVSSYPSPIATSYPSPVPTSYSSPVSSCYPSPVHTSFPSPSIA 63
Query: 1612 PTSPAYSPTSPAYSPTSPSYSPTSPSYS 1639
T P+ SPT TS S + S+S
Sbjct: 64 TTYPSVSPTFQTQVATSFPSSVVTNSFS 91
Score = 36.3 bits (83), Expect = 0.020
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1653
+ ++ S + + + SP S SP + +Y SP SYS S P+ S SPS +
Sbjct: 4 AAPVSTASPNISIYSSSPVSSYPSPIATSYPSPVPTSYSSPVSSCYPSPVHTSFPSPSIA 63
Query: 1654 PTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
T PS SPT TS S + S+S SP +P S
Sbjct: 64 TTYPSVSPTFQTQVATSFPSSVVTNSFS--SPVTTPLS 99
Score = 35.9 bits (82), Expect = 0.027
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPAYSPTSPAYSPTSPAYSPTSPSYS 1632
+ ++ S + + S SP S SP + SY SP +YS + P+ S SPS +
Sbjct: 4 AAPVSTASPNISIYSSSPVSSYPSPIATSYPSPVPTSYSSPVSSCYPSPVHTSFPSPSIA 63
Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
T PS SPT + TS S + S+S SP +P S
Sbjct: 64 TTYPSVSPTFQTQVATSFPSSVVTNSFS--SPVTTPLS 99
Score = 35.5 bits (81), Expect = 0.038
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1592
++ + + S SP S SP + SY SP SYS S P+ S SPS + T
Sbjct: 6 PVSTASPNISIYSSSPVSSYPSPIATSYPSPVPTSYSSPVSSCYPSPVHTSFPSPSIATT 65
Query: 1593 SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1628
PS SPT + TS S + ++S SP +P S
Sbjct: 66 YPSVSPTFQTQVATSFPSSVVTNSFS--SPVTTPLS 99
Score = 35.5 bits (81), Expect = 0.039
Identities = 32/86 (37%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
SP YS SP S SP + SY SP SYS S P+ S SPS + T
Sbjct: 11 SPNISIYSS-----SPVSSYPSPIATSYPSPVPTSYSSPVSSCYPSPVHTSFPSPSIATT 65
Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYS 1632
P+ SPT TS S + S+S
Sbjct: 66 YPSVSPTFQTQVATSFPSSVVTNSFS 91
Score = 33.6 bits (76), Expect = 0.15
Identities = 35/96 (36%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 1520 SPTSPGYSPTSPGYSPTSPTYSPSSPGY-SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
SP YS SP S SP + Y SP +YS S P+ S SPS + T
Sbjct: 11 SPNISIYSS-----SPVSSYPSPIATSYPSPVPTSYSSPVSSCYPSPVHTSFPSPSIATT 65
Query: 1579 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
PS SPT + TS S + S+S SP +P S
Sbjct: 66 YPSVSPTFQTQVATSFPSSVVTNSFS--SPVTTPLS 99
Score = 33.2 bits (75), Expect = 0.24
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAY-SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
SP YS + + P SP + +Y SP SYS S P+ S SPS + T
Sbjct: 11 SPNISIYSSSPVSSYP-----SPIATSYPSPVPTSYSSPVSSCYPSPVHTSFPSPSIATT 65
Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
PS SPT + TS S + ++S SP +P S
Sbjct: 66 YPSVSPTFQTQVATSFPSSVVTNSFS--SPVTTPLS 99
Score = 32.0 bits (72), Expect = 0.68
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGY-SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT 1557
S+ + S SP S SP + Y SP YS + PS S SP+ + T
Sbjct: 6 PVSTASPNISIYSSSPVSSYPSPIATSYPSPVPTSYSSPVSSCYPSPVHTSFPSPSIATT 65
Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYS 1583
PS SPT + TS S + S+S
Sbjct: 66 YPSVSPTFQTQVATSFPSSVVTNSFS 91
Score = 31.7 bits (71), Expect = 0.85
Identities = 30/86 (34%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 1513 SPTSPGYSPTSPGYSPTSPGYSPTSPTY-SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT 1571
SP YS SP S SP + +Y SP YS + P+ S SPS + T
Sbjct: 11 SPNISIYSS-----SPVSSYPSPIATSYPSPVPTSYSSPVSSCYPSPVHTSFPSPSIATT 65
Query: 1572 SPSYSPTSPSYSPTSPSYSPTSPSYS 1597
PS SPT + TS S + S+S
Sbjct: 66 YPSVSPTFQTQVATSFPSSVVTNSFS 91
>gnl|CDD|218397 pfam05044, Prox1, Homeobox prospero-like protein (PROX1). The
homeobox gene Prox1 is expressed in a subpopulation of
endothelial cells that, after budding from veins, gives
rise to the mammalian lymphatic system. Prox1 has been
found to be an early specific marker for the developing
liver and pancreas in the mammalian foregut endoderm.
This family contains an atypical homeobox domain.
Length = 908
Score = 39.7 bits (92), Expect = 0.019
Identities = 50/256 (19%), Positives = 74/256 (28%), Gaps = 24/256 (9%)
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPSYSPTSP 1608
SP + T+ + P S++ + + SP P + P
Sbjct: 511 SPRTHTVNDRGQCFGDPDISTAAMFIIPKPPDSFANVAAAALYNSPFCMP--QTPQPQDA 568
Query: 1609 ---------AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1659
+P + T +P + S P+ P+S S
Sbjct: 569 PEQTEALSLVVTPKKKRHKVTDTRITPRTVS--RILALRDAVGPAAGTHHQPLHPSSLSA 626
Query: 1660 SPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY-SPSLAYSPSSPRLSPAS 1718
S P P + + S S Y QS +PS + P R SP
Sbjct: 627 SMGFHPPPFRHPFPLPLTVAIPNPSLHQSEVFMGYPFQSPHLGAPSGSP-PGKDRDSPDL 685
Query: 1719 PYSPTSPNYSPTSSSYSPTSPSYSPSSPTY-SPSSPYNAGGGNPDYSPSSPQYSPSAGYS 1777
P TS + S+ + P SSP S S + G D S S +P G
Sbjct: 686 PRPTTSLHPKLLSAHHHP------GSSPDGLSLSLIKSECGDLQDMSDISSADAPYDGMM 739
Query: 1778 PSAPGYSPSSTSQYTP 1793
P+ TP
Sbjct: 740 PTISFPKLMHQETLTP 755
>gnl|CDD|216078 pfam00716, Peptidase_S21, Assemblin (Peptidase family S21).
Length = 326
Score = 38.9 bits (91), Expect = 0.019
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYSPTSP----SYSPTSPSYSPTSPS----YSPTSPSYS 1583
G SP + ++P SP+ SP +P S + T+ S SP + Y P
Sbjct: 232 GVSPGTAPSFDATPSVSPSGQPLSPAAPPGTSSVAGTALSASPAALFGDMVYVPLDAYNQ 291
Query: 1584 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS 1618
+ P +P PA +P PA
Sbjct: 292 LLAGQAFNQPPDPQGPAPPAELAPPAPAPPPPANP 326
Score = 37.8 bits (88), Expect = 0.042
Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 13/117 (11%)
Query: 1529 TSPGYSPTSPTYSPSS-----PGYSPTSPAYSPTSPSYSPTSPSYSPTSP----SYSPTS 1579
SPG + +S G SP + +PS SP+ SP +P S + T+
Sbjct: 210 ESPGLTAACHDEVVASKGGNDRGVSPGTAPSFDATPSVSPSGQPLSPAAPPGTSSVAGTA 269
Query: 1580 PSYSPTSPS----YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYS 1632
S SP + Y P + P +P PA +P P+
Sbjct: 270 LSASPAALFGDMVYVPLDAYNQLLAGQAFNQPPDPQGPAPPAELAPPAPAPPPPANP 326
Score = 37.8 bits (88), Expect = 0.047
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 1525 GYSPTSPGYSPTSPTYSPSSPGYSPTSPA----YSPTSPSYSPTSPS----YSPTSPSYS 1576
G SP + +P+ SPS SP +P + T+ S SP + Y P
Sbjct: 232 GVSPGTAPSFDATPSVSPSGQPLSPAAPPGTSSVAGTALSASPAALFGDMVYVPLDAYNQ 291
Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
+ P +P P+ +P PA
Sbjct: 292 LLAGQAFNQPPDPQGPAPPAELAPPAPAPPPPANP 326
Score = 35.8 bits (83), Expect = 0.18
Identities = 29/133 (21%), Positives = 45/133 (33%), Gaps = 15/133 (11%)
Query: 1536 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1595
TY +S T+ + S SP T+PS+ T PS SP+
Sbjct: 201 KGHTYLKASESPGLTAACHDEVVASKGGNDRGVSP------GTAPSFDAT-PSVSPSGQP 253
Query: 1596 YSPTSP----SYSPTSPAYSPTSPA----YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
SP +P S + T+ + SP + Y P + P +P
Sbjct: 254 LSPAAPPGTSSVAGTALSASPAALFGDMVYVPLDAYNQLLAGQAFNQPPDPQGPAPPAEL 313
Query: 1648 TSPSYSPTSPSYS 1660
P+ +P P+
Sbjct: 314 APPAPAPPPPANP 326
Score = 35.8 bits (83), Expect = 0.20
Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 9/130 (6%)
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPAYSPTSPAYSPTSP 1622
+Y S S T+ + S SP T+PS+ T P+ SP+ SP +P
Sbjct: 201 KGHTYLKASESPGLTAACHDEVVASKGGNDRGVSPGTAPSFDAT-PSVSPSGQPLSPAAP 259
Query: 1623 AYSPTSPSYSPTSPSYSPTSPS----YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP 1678
P + S + T+ S SP + Y P + P +P P
Sbjct: 260 ---PGTSSVAGTALSASPAALFGDMVYVPLDAYNQLLAGQAFNQPPDPQGPAPPAELAPP 316
Query: 1679 SYSPTSPTYS 1688
+ +P P
Sbjct: 317 APAPPPPANP 326
Score = 35.5 bits (82), Expect = 0.24
Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 7/98 (7%)
Query: 1511 GYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS----YSPTSP 1566
G SP + +P SP+ SP +P P + + T+ + SP + Y P
Sbjct: 232 GVSPGTAPSFDATPSVSPSGQPLSPAAP---PGTSSVAGTALSASPAALFGDMVYVPLDA 288
Query: 1567 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1604
+ P +P P+ +P P+
Sbjct: 289 YNQLLAGQAFNQPPDPQGPAPPAELAPPAPAPPPPANP 326
Score = 34.3 bits (79), Expect = 0.57
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 1497 GYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG----YSPTSP 1552
G SP + ++P SP+ SP +P P + + T+ + SP++ Y P
Sbjct: 232 GVSPGTAPSFDATPSVSPSGQPLSPAAP---PGTSSVAGTALSASPAALFGDMVYVPLDA 288
Query: 1553 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1590
+ P +P P+ +P P+
Sbjct: 289 YNQLLAGQAFNQPPDPQGPAPPAELAPPAPAPPPPANP 326
Score = 34.3 bits (79), Expect = 0.59
Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 7/127 (5%)
Query: 1634 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
+Y S S T+ + S SP + +PS SP+ SP +P
Sbjct: 201 KGHTYLKASESPGLTAACHDEVVASKGGNDRGVSPGTAPSFDATPSVSPSGQPLSPAAPP 260
Query: 1694 YNPQSAKYSPSLAYSPSSPRLS----PASPYSPT-SPNYSPTSSSYSPTSPSYSPSSPTY 1748
A +L+ SP++ P Y+ + +P + P
Sbjct: 261 GTSSVA--GTALSASPAALFGDMVYVPLDAYNQLLAGQAFNQPPDPQGPAPPAELAPPAP 318
Query: 1749 SPSSPYN 1755
+P P N
Sbjct: 319 APPPPAN 325
Score = 33.9 bits (78), Expect = 0.76
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 7/98 (7%)
Query: 1504 GYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA----YSPTSP 1559
G SP + +P SP+ SP +P P + + + ++ SP + Y P
Sbjct: 232 GVSPGTAPSFDATPSVSPSGQPLSPAAP---PGTSSVAGTALSASPAALFGDMVYVPLDA 288
Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
+ P +P P+ +P P+
Sbjct: 289 YNQLLAGQAFNQPPDPQGPAPPAELAPPAPAPPPPANP 326
Score = 31.6 bits (72), Expect = 3.4
Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 15/133 (11%)
Query: 1585 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
+Y S S T+ + + SP T+PS+ T PS SP+
Sbjct: 201 KGHTYLKASESPGLTAACHDEVVASKGGNDRGVSP------GTAPSFDAT-PSVSPSGQP 253
Query: 1645 YSPTSP----SYSPTSPSYSPTSPA----YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
SP +P S + T+ S SP + Y P + P +P
Sbjct: 254 LSPAAPPGTSSVAGTALSASPAALFGDMVYVPLDAYNQLLAGQAFNQPPDPQGPAPPAEL 313
Query: 1697 QSAKYSPSLAYSP 1709
+P +P
Sbjct: 314 APPAPAPPPPANP 326
Score = 31.6 bits (72), Expect = 3.9
Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS---- 1679
T+PS+ T PS SP+ SP +P + + + T+ SP +
Sbjct: 227 GGNDRGVSPGTAPSFDAT-PSVSPSGQPLSPAAPPGTSSV---AGTALSASPAALFGDMV 282
Query: 1680 YSPTSPTYSPTSPSYNPQSAKYSPSLAYSP-SSPRLSPASPYSP 1722
Y P + Q + + P +P P +P
Sbjct: 283 YVPLDAYNQLLAGQAFNQPPDPQGPAPPAELAPPAPAPPPPANP 326
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 39.2 bits (92), Expect = 0.020
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-T 1599
S S+ + T P + P +PT P PT+ + PT P PT+ S +P+ P
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573
Query: 1600 SPSYSPTSPAYSPTSPAYSPTSP 1622
S P +P+ S
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSPEE 596
Score = 39.2 bits (92), Expect = 0.020
Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP-T 1669
S ++ + T P + P +PT P PT+ + PT P PT+ S +PA P
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573
Query: 1670 SPGYSPTSPSYSPTSPTYSPTSP 1692
S P +P+ S
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSPEE 596
Score = 38.8 bits (91), Expect = 0.027
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP-T 1648
S ++ + + T P + P +PT P PT+ A PT P PT+ S +P+ P
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573
Query: 1649 SPSYSPTSPSYSPTSPAYSPTSP 1671
S P +P+ S
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSPEE 596
Score = 38.0 bits (89), Expect = 0.053
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 6/89 (6%)
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
S ++ + T P + P +PT P PT+ + PT P PT+ S +P+ P
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIP-- 571
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
S P +P+ S
Sbjct: 572 ----ADSSPPPPIPEEPTPSPTKDSSPEE 596
Score = 38.0 bits (89), Expect = 0.055
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-T 1592
S ++ + + P + P +PT P PT+ + PT P PT+ S +P+ P
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPAD 573
Query: 1593 SPSYSPTSPSYSPTSPAYSPTSP 1615
S P +P+ S
Sbjct: 574 SSPPPPIPEEPTPSPTKDSSPEE 596
Score = 31.9 bits (73), Expect = 3.6
Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 11/94 (11%)
Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
S ++ + + T P + P +PT P PT+ PT P P PT + S + Q
Sbjct: 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPP---PPPPTATQASSNAPAQI 570
Query: 1699 AKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSS 1732
+ SSP +P+ S
Sbjct: 571 P--------ADSSPPPPIPEEPTPSPTKDSSPEE 596
>gnl|CDD|233508 TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus splicing factor
family. Included in this family of heterogeneous
ribonucleoproteins are PTB (polypyrimidine tract binding
protein ) and hnRNP-L. These proteins contain four RNA
recognition motifs (rrm: pfam00067).
Length = 481
Score = 39.0 bits (91), Expect = 0.025
Identities = 16/73 (21%), Positives = 25/73 (34%)
Query: 1477 TDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT 1536
T Q P + G S GYS +P + G P P+ + + +P
Sbjct: 204 THRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPA 263
Query: 1537 SPTYSPSSPGYSP 1549
+Y P+ G
Sbjct: 264 ISSYGPAGGGPGS 276
Score = 35.6 bits (82), Expect = 0.27
Identities = 15/79 (18%), Positives = 21/79 (26%), Gaps = 1/79 (1%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1551
P + P P GYS +P + G P PS + +
Sbjct: 199 PGLDQTHRQRQPALLGQHPSSYG-HDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEA 257
Query: 1552 PAYSPTSPSYSPTSPSYSP 1570
+P SY P
Sbjct: 258 APLAPAISSYGPAGGGPGS 276
Score = 34.4 bits (79), Expect = 0.54
Identities = 19/88 (21%), Positives = 25/88 (28%), Gaps = 5/88 (5%)
Query: 1500 PSSPGYSPSSPGYSPTSPGYSPT---SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSP 1556
P PG PG T P S GYS +P + G P P
Sbjct: 191 PDLPGRRD--PGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPP 248
Query: 1557 TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1584
+ + + +P SY P
Sbjct: 249 SRYRPAYEAAPLAPAISSYGPAGGGPGS 276
Score = 33.2 bits (76), Expect = 1.3
Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 6/88 (6%)
Query: 1690 TSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSS--PT 1747
T+P P + P L P S YS S P +P P
Sbjct: 189 TNP-DLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYS---SHGGPLAPLAGGDRMGPP 244
Query: 1748 YSPSSPYNAGGGNPDYSPSSPQYSPSAG 1775
+ P S Y +P+ Y P+ G
Sbjct: 245 HGPPSRYRPAYEAAPLAPAISSYGPAGG 272
Score = 32.1 bits (73), Expect = 2.9
Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 5/88 (5%)
Query: 1514 PTSPGYSPTSPGYSPTSPGYSPT---SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSP 1570
P PG PG T P S GYS +P + P P
Sbjct: 191 PDLPGRRD--PGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPP 248
Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1598
+ + + +P SY P
Sbjct: 249 SRYRPAYEAAPLAPAISSYGPAGGGPGS 276
>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed.
Length = 421
Score = 38.5 bits (89), Expect = 0.027
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 13/133 (9%)
Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
T P + T S S A +P+S A SPA P+S + + + + S
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIP--SPAVIPSSVTTQSATTTQASAVALSSAGVLP 355
Query: 1652 YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS 1711
T P + PA P + P S + + S T + TS + P + SL +P+S
Sbjct: 356 SDVTLPG-TVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTT-----SLPAAPAS 409
Query: 1712 PRLSPASPYSPTS 1724
P SPTS
Sbjct: 410 -----NIPVSPTS 417
Score = 38.5 bits (89), Expect = 0.031
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1665
T P + T + S A +P+S + SP+ P+S + + + + S
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIP--SPAVIPSSVTTQSATTTQASAVALSSAGVLP 355
Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLS-PASPYSPTS 1724
T PG + P+ P + P S + QS+ + ++ + + P S PA+P S
Sbjct: 356 SDVTLPG-TVALPAAEPVNMQPQPMSTTETQQSS--TGNITSTANGPTTSLPAAPASNIP 412
Query: 1725 PNYSPTS 1731
SPTS
Sbjct: 413 V--SPTS 417
Score = 38.2 bits (88), Expect = 0.042
Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 5/127 (3%)
Query: 1518 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1577
T P + T S +PSS SPA P+S + + + + S
Sbjct: 294 DTHGTVPVAAVTPSSAVTQSSAITPSSAAIP--SPAVIPSSVTTQSATTTQASAVALSSA 351
Query: 1578 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS--PSYSPTS 1635
T P + P+ P + P S + S + TS A PT+ P+ ++
Sbjct: 352 GVLPSDVTLPG-TVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASN 410
Query: 1636 PSYSPTS 1642
SPTS
Sbjct: 411 IPVSPTS 417
Score = 37.4 bits (86), Expect = 0.075
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 3/115 (2%)
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
S + S + T S + SP+ P+S + + + + S T P
Sbjct: 304 VTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPG- 362
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTS 1663
+ PA P + P S + + S + + TS + PT+ P+ ++ SPTS
Sbjct: 363 TVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTS 417
Score = 37.0 bits (85), Expect = 0.10
Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 5/122 (4%)
Query: 1634 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
T P + T S S + +P+S + SPA P+S + + + S
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIP--SPAVIPSSVTTQSATTTQASAVALSSAGVLP 355
Query: 1694 YNPQSAKYSPSLAYSPSSPRLSPAS-PYSPTSPNYSPTSSSYSPTS--PSYSPSSPTYSP 1750
+ A P + + P S + S + TS++ PT+ P+ S+ SP
Sbjct: 356 SDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSP 415
Query: 1751 SS 1752
+S
Sbjct: 416 TS 417
Score = 36.6 bits (84), Expect = 0.12
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 6/124 (4%)
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
T P + T S S + +P+S + SP+ P+S + + + S
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIP--SPAVIPSSVTTQSATTTQASAVALSSAGVLP 355
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP-SYSP 1682
T P + P+ P + P S + + S + + TS A PT+ P +P S P
Sbjct: 356 SDVTLPG-TVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTS--LPAAPASNIP 412
Query: 1683 TSPT 1686
SPT
Sbjct: 413 VSPT 416
Score = 36.2 bits (83), Expect = 0.15
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 5/123 (4%)
Query: 1557 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPA 1616
T P + T S S + +P+S + SP+ P+S + + + + S
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIP--SPAVIPSSVTTQSATTTQASAVALSSAGVLP 355
Query: 1617 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PAYSPTSPGYS 1674
T P + P+ P + P S + + S + + TS + PT+ PA ++ S
Sbjct: 356 SDVTLPG-TVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVS 414
Query: 1675 PTS 1677
PTS
Sbjct: 415 PTS 417
Score = 35.1 bits (80), Expect = 0.38
Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 5/123 (4%)
Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
T P + T S S + +P+S + SP+ P+S + + S
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIP--SPAVIPSSVTTQSATTTQASAVALSSAGVLP 355
Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS--PSYSPTSPTYS 1688
T P + P+ P + P S + + S + TS PT+ P+ ++ S
Sbjct: 356 SDVTLPG-TVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVS 414
Query: 1689 PTS 1691
PTS
Sbjct: 415 PTS 417
Score = 33.2 bits (75), Expect = 1.3
Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 5/118 (4%)
Query: 1578 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
T P + T S S + +P+S + SPA P+S + + S
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIP--SPAVIPSSVTTQSATTTQASAVALSSAGVLP 355
Query: 1638 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN 1695
T P + P+ P + P S + S + TS + PT T P +P+ N
Sbjct: 356 SDVTLPG-TVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPT--TSLPAAPASN 410
Score = 31.2 bits (70), Expect = 5.4
Identities = 27/110 (24%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 1493 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP 1552
T S +PSS SP P+S + + S + PG + P
Sbjct: 311 TQSSAITPSSAAIP--SPAVIPSSVTTQSATTTQASAVALSSAGVLPSDVTLPG-TVALP 367
Query: 1553 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTS 1600
A P + P S + + S + + TS + PT+ P+ ++ SPTS
Sbjct: 368 AAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTS 417
Score = 30.8 bits (69), Expect = 7.5
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 6/120 (5%)
Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYS-PTSPGYSPTSPGYSPTS-PTYSPSSPGYSPTS 1551
+ P + + S +P+S P S T+ + T + SS G P+
Sbjct: 298 TVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGVLPSD 357
Query: 1552 PAYSPTS--PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPTS 1607
T P+ P + P S + + S + + TS + PT+ P+ ++ SPTS
Sbjct: 358 VTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPTS 417
Score = 30.8 bits (69), Expect = 7.5
Identities = 28/121 (23%), Positives = 43/121 (35%), Gaps = 5/121 (4%)
Query: 1475 PVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYS 1534
PV S V + SS SP PSS + + S
Sbjct: 300 PVAAVTPSSAVTQSSAITPSSAAIP--SPAVIPSSVTTQSATTTQASAVALSSAGVLPSD 357
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS--PSYSPTSPSYSPT 1592
T P + + P P + P S + + S + + TS + PT+ P+ ++ SPT
Sbjct: 358 VTLPG-TVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPVSPT 416
Query: 1593 S 1593
S
Sbjct: 417 S 417
>gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal. Mediator is a
large complex of up to 33 proteins that is conserved from
plants to fungi to humans - the number and representation
of individual subunits varying with species. It is
arranged into four different sections, a core, a head, a
tail and a kinase-activity part, and the number of
subunits within each of these is what varies with
species. Overall, Mediator regulates the transcriptional
activity of RNA polymerase II but it would appear that
each of the four different sections has a slightly
different function. Mediator subunit Hrs1/Med3 is a
physical target for Cyc8-Tup1, a yeast transcriptional
co-repressor.
Length = 381
Score = 38.5 bits (89), Expect = 0.030
Identities = 33/168 (19%), Positives = 64/168 (38%), Gaps = 10/168 (5%)
Query: 1599 TSPSYSPT--SPAYSPTSPAYSPTSPAYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPT 1655
T YS T + + + S S + ++ S + T+ S + T P+ +
Sbjct: 97 TVDEYSETYKEKKFQVLETLGTYNQLGNAGASASITKTSNGSDAATTSSTANT-PAAAKV 155
Query: 1656 SPSYS---PTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA--YSPS 1710
+ + P + ++ + S + + T+PT + P Q+ K P+ A S
Sbjct: 156 LKANAASAPNTTTGVGSAATTAAISAT-TATTPTTTQKKPRKPRQTKKTGPAAAAKAQAS 214
Query: 1711 SPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGG 1758
+ + AS Y+ P ++S P+ +P + SP NA
Sbjct: 215 AQAQAQASAYNQMGSLGVPQNTSMLAQIPNPTPLMQLLNGVSPNNAMA 262
Score = 37.3 bits (86), Expect = 0.075
Identities = 35/231 (15%), Positives = 79/231 (34%), Gaps = 14/231 (6%)
Query: 1472 RLSPV--TDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPT 1529
+L P+ T ++S F + G + + G + +S + TS G + +
Sbjct: 90 QLQPLFRTVDEYSETYKEKKFQVLETLG-TYNQLGNAGASASITKTSNGSDAATTSSTAN 148
Query: 1530 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1589
+P + + S+P + S + + + + T+P+ + P +
Sbjct: 149 TPAAAKVLKANAASAP-----NTTTGVGSAATTAAISATTATTPTTTQKKPRKPRQTKKT 203
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
P + + + S + AY+ P + + P+ +P + SP+ + S
Sbjct: 204 GPAAAAKAQASAQAQAQASAYNQMGSLGVPQNTSMLAQIPNPTPLMQLLNGVSPNNAMAS 263
Query: 1650 PSYSPTSPSYSPTSPAYSP-----TSPGYSPTSPSYSPTSPTYSPTSPSYN 1695
P + SP + T + + S + +PS +
Sbjct: 264 P-LNNMSPMRNLNQMGNQNNGGQMTPSANNGNMNNQSRENSMNQGMTPSAS 313
Score = 35.4 bits (81), Expect = 0.26
Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 13/221 (5%)
Query: 1505 YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPT 1564
+ + G + S + TS G + + + ++P + A + ++P+
Sbjct: 110 FQVLETLGTYNQLGNAGASASITKTSNGSDAATTSSTANTPAAAKVLKANAASAPN---- 165
Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1624
+ S + + + + T+P+ + P + P + A + S + AY
Sbjct: 166 -TTTGVGSAATTAAISATTATTPTTTQKKPRKPRQTKKTGPAAAAKAQASAQAQAQASAY 224
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTS---PSYSPTSPSYSP---TSPAYSPTSPGYSPTSP 1678
+ P + S P+ +P SP + SP SP + G
Sbjct: 225 NQMGSLGVPQNTSMLAQIPNPTPLMQLLNGVSPNNAMASPLNNMSPMRNLNQMGNQNNGG 284
Query: 1679 SYSPTSPTYS-PTSPSYNPQSAKYSPSLAYSPSSPRLSPAS 1718
+P++ + N + +PS A + ++PA+
Sbjct: 285 QMTPSANNGNMNNQSRENSMNQGMTPS-ASMINLNNITPAN 324
>gnl|CDD|219805 pfam08347, CTNNB1_binding, N-terminal CTNNB1 binding. This region
tends to appear at the N-terminus of proteins also
containing DNA-binding HMG (high mobility group) boxes
(pfam00505) and appears to bind the armadillo repeat of
CTNNB1 (beta-catenin), forming a stable complex.
Signaling by Wnt through TCF/LCF is involved in
developmental patterning, induction of neural tissues,
cell fate decisions and stem cell differentiation.
Isoforms of HMG T-cell factors lacking the N-terminal
CTNNB1-binding domain cannot fulfill their role as
transcriptional activators in T-cell differentiation.
Length = 200
Score = 37.6 bits (87), Expect = 0.034
Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 3/135 (2%)
Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
S SS + + + P SY S Y S P +P
Sbjct: 55 SESSSSEAISRRDHPPRYESYRDKSREKLEDVSHKHQDMGYYKGPPYSGYPFLMLPNPYL 114
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS---PTSPSYSPTSP 1657
P+ S + S P +P + ++ +SP +P P P
Sbjct: 115 PNGSLSPLPPSSNKVPVVQPPHHVHPLTPLITYSNEHFSPGTPPPHLPYDVDPKTGIPRP 174
Query: 1658 SYSPTSPAYSPTSPG 1672
+ P + P SPG
Sbjct: 175 PHPPDISPFYPLSPG 189
Score = 36.8 bits (85), Expect = 0.060
Identities = 24/146 (16%), Positives = 35/146 (23%)
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
S SS + S + P Y S Y P +P
Sbjct: 55 SESSSSEAISRRDHPPRYESYRDKSREKLEDVSHKHQDMGYYKGPPYSGYPFLMLPNPYL 114
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS 1618
P+ S + S P +P + ++ +SP +P T
Sbjct: 115 PNGSLSPLPPSSNKVPVVQPPHHVHPLTPLITYSNEHFSPGTPPPHLPYDVDPKTGIPRP 174
Query: 1619 PTSPAYSPTSPSYSPTSPSYSPTSPS 1644
P P SP P
Sbjct: 175 PHPPDISPFYPLSPGGVGQIPHPLGW 200
Score = 34.5 bits (79), Expect = 0.32
Identities = 24/146 (16%), Positives = 38/146 (26%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
S +S + + S + P +Y S Y S P +P
Sbjct: 55 SESSSSEAISRRDHPPRYESYRDKSREKLEDVSHKHQDMGYYKGPPYSGYPFLMLPNPYL 114
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1653
P+ S + S P +P + ++ +SP +P T
Sbjct: 115 PNGSLSPLPPSSNKVPVVQPPHHVHPLTPLITYSNEHFSPGTPPPHLPYDVDPKTGIPRP 174
Query: 1654 PTSPSYSPTSPAYSPTSPGYSPTSPS 1679
P P SP P
Sbjct: 175 PHPPDISPFYPLSPGGVGQIPHPLGW 200
Score = 34.5 bits (79), Expect = 0.33
Identities = 21/131 (16%), Positives = 28/131 (21%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1551
P Y S Y P +P P S S S
Sbjct: 69 PPRYESYRDKSREKLEDVSHKHQDMGYYKGPPYSGYPFLMLPNPYLPNGSLSPLPPSSNK 128
Query: 1552 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
P +P + ++ +SP +P T P P SP P
Sbjct: 129 VPVVQPPHHVHPLTPLITYSNEHFSPGTPPPHLPYDVDPKTGIPRPPHPPDISPFYPLSP 188
Query: 1612 PTSPAYSPTSP 1622
Sbjct: 189 GGVGQIPHPLG 199
Score = 33.0 bits (75), Expect = 0.99
Identities = 26/143 (18%), Positives = 40/143 (27%), Gaps = 4/143 (2%)
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
S +S S + + + P SY S Y S P +P
Sbjct: 55 SESSSSEAISRRDHPPRYESYRDKSREKLEDVSHKHQDMGYYKGPPYSGYPFLMLPNPYL 114
Query: 1615 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYS 1674
P S + S P +P + ++ +SP +P P
Sbjct: 115 PNGSLSPLPPSSNKVPVVQPPHHVHPLTPLITYSNEHFSPGTPP----PHLPYDVDPKTG 170
Query: 1675 PTSPSYSPTSPTYSPTSPSYNPQ 1697
P + P + P SP Q
Sbjct: 171 IPRPPHPPDISPFYPLSPGGVGQ 193
Score = 33.0 bits (75), Expect = 1.1
Identities = 24/136 (17%), Positives = 38/136 (27%)
Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
S +S S + + + P SY S Y + P +P
Sbjct: 55 SESSSSEAISRRDHPPRYESYRDKSREKLEDVSHKHQDMGYYKGPPYSGYPFLMLPNPYL 114
Query: 1636 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN 1695
P+ S + S P +P + ++ +SP +P T
Sbjct: 115 PNGSLSPLPPSSNKVPVVQPPHHVHPLTPLITYSNEHFSPGTPPPHLPYDVDPKTGIPRP 174
Query: 1696 PQSAKYSPSLAYSPSS 1711
P SP SP
Sbjct: 175 PHPPDISPFYPLSPGG 190
Score = 32.6 bits (74), Expect = 1.4
Identities = 24/146 (16%), Positives = 37/146 (25%)
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
S +S + + + + P SY S Y S P +P
Sbjct: 55 SESSSSEAISRRDHPPRYESYRDKSREKLEDVSHKHQDMGYYKGPPYSGYPFLMLPNPYL 114
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
P S + S P +P + ++ +SP +P T
Sbjct: 115 PNGSLSPLPPSSNKVPVVQPPHHVHPLTPLITYSNEHFSPGTPPPHLPYDVDPKTGIPRP 174
Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPS 1693
P P SP P
Sbjct: 175 PHPPDISPFYPLSPGGVGQIPHPLGW 200
Score = 32.6 bits (74), Expect = 1.4
Identities = 23/145 (15%), Positives = 37/145 (25%)
Query: 1520 SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1579
S +S + + + P +Y S Y S P +P
Sbjct: 55 SESSSSEAISRRDHPPRYESYRDKSREKLEDVSHKHQDMGYYKGPPYSGYPFLMLPNPYL 114
Query: 1580 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS 1639
P+ S + S P +P + ++ +SP +P T
Sbjct: 115 PNGSLSPLPPSSNKVPVVQPPHHVHPLTPLITYSNEHFSPGTPPPHLPYDVDPKTGIPRP 174
Query: 1640 PTSPSYSPTSPSYSPTSPSYSPTSP 1664
P P SP P
Sbjct: 175 PHPPDISPFYPLSPGGVGQIPHPLG 199
Score = 32.2 bits (73), Expect = 1.6
Identities = 23/146 (15%), Positives = 36/146 (24%)
Query: 1513 SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTS 1572
S +S + + + P Y S Y S P +P
Sbjct: 55 SESSSSEAISRRDHPPRYESYRDKSREKLEDVSHKHQDMGYYKGPPYSGYPFLMLPNPYL 114
Query: 1573 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYS 1632
P+ S + S P +P + ++ +SP +P T
Sbjct: 115 PNGSLSPLPPSSNKVPVVQPPHHVHPLTPLITYSNEHFSPGTPPPHLPYDVDPKTGIPRP 174
Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPS 1658
P P SP P
Sbjct: 175 PHPPDISPFYPLSPGGVGQIPHPLGW 200
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 38.4 bits (89), Expect = 0.035
Identities = 22/82 (26%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYS- 1742
SP SP P+ P P+ P A P SP +PT P + S
Sbjct: 383 SPAGSPDVKKKAPEPDLPQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSAPL 442
Query: 1743 PSSPTYSPSSPYNAGGGNPDYS 1764
P SP S +G D
Sbjct: 443 PPSPQASAPRNVASGKPGVDLG 464
Score = 33.0 bits (75), Expect = 1.8
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 1593 SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1652
SP+ SP +P P + + +P + SP+ +PT P + S
Sbjct: 383 SPAGSPDVKKKAPEPDL--PQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSA 440
Query: 1653 S-PTSPSYSPTSPAYSPTSPG 1672
P SP S + PG
Sbjct: 441 PLPPSPQASA-PRNVASGKPG 460
Score = 32.2 bits (73), Expect = 2.7
Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 1572 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY 1631
SP+ SP +P P P P PA P SPA +PT P + S
Sbjct: 383 SPAGSPDVKKKAPEPDLPQP-DRHPGPAKPEAPGARPAELP-SPASAPTPEQQPPVARSA 440
Query: 1632 S-PTSPSYSPTSPSYSPTSPS 1651
P SP S + + P
Sbjct: 441 PLPPSPQASA-PRNVASGKPG 460
Score = 31.8 bits (72), Expect = 3.8
Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 1579 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP---TSPAYSPTSPSYSPTS 1635
SP+ SP +P P P P +P P SPA +PT P +
Sbjct: 383 SPAGSPDVKKKAPEPD---LPQPDRHP--GPAKPEAPGARPAELPSPASAPTPEQQPPVA 437
Query: 1636 PSYS-PTSPSYSPTSPSYSPTSPS 1658
S P SP S + + P
Sbjct: 438 RSAPLPPSPQASA-PRNVASGKPG 460
Score = 31.8 bits (72), Expect = 4.4
Identities = 25/97 (25%), Positives = 32/97 (32%), Gaps = 15/97 (15%)
Query: 1486 GGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP 1545
GG+A SP SP +P P P P +PG P SP
Sbjct: 378 GGVAPSPAGSPDVKKKAPEPDLPQPDRHP---------GPAKPEAPGARPA----ELPSP 424
Query: 1546 GYSPTSPAYSPTSPSYS-PTSPSYSPTSPSYSPTSPS 1581
+PT P + S P SP S + + P
Sbjct: 425 ASAPTPEQQPPVARSAPLPPSPQASA-PRNVASGKPG 460
Score = 31.5 bits (71), Expect = 5.5
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 4/81 (4%)
Query: 1600 SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1659
SP+ SP +P P + + +P + SP+ +PT P + S
Sbjct: 383 SPAGSPDVKKKAPEPDL--PQPDRHPGPAKPEAPGARPAELPSPASAPTPEQQPPVARSA 440
Query: 1660 S-PTSPAYSPTSPGYSPTSPS 1679
P SP S + P
Sbjct: 441 PLPPSPQASA-PRNVASGKPG 460
>gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein. This family of
trypanosomal proteins resemble vertebrate mucins. The
protein consists of three regions. The N and C terminii
are conserved between all members of the family, whereas
the central region is not well conserved and contains a
large number of threonine residues which can be
glycosylated. Indirect evidence suggested that these
genes might encode the core protein of parasite mucins,
glycoproteins that were proposed to be involved in the
interaction with, and invasion of, mammalian host cells.
This family contains an N-terminal signal peptide.
Length = 143
Score = 36.4 bits (83), Expect = 0.035
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY 1701
S + + T+ + PT+ + + T+ T+ + T+ + + T+ T + +PS N +++
Sbjct: 43 SQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTT-TTTTTTTTTEAPSKNTTTSEA 101
Query: 1702 -SPSLAYSPSSPRLSPASPYSP 1722
+ + +PSS R S S
Sbjct: 102 PTTTDTRAPSSIREIDGSLGSS 123
Score = 34.8 bits (79), Expect = 0.14
Identities = 17/86 (19%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS--- 1642
S + + T+ + PT+ + + T+ T+ + T+ + T+ + + +PS + T+
Sbjct: 43 SQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTT-TTTTTTTTTEAPSKNTTTSEA 101
Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSP 1668
P+ + T S S S A+
Sbjct: 102 PTTTDTRAPSSIREIDGSLGSSAWVC 127
Score = 34.1 bits (77), Expect = 0.24
Identities = 17/88 (19%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1591
G S T+ T + ++P + T+ + T+ + + T + + T+ + + T+ +P+ + +
Sbjct: 41 GQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTE-APSKNTTTS 99
Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSP 1619
+P+ + T S S S A+
Sbjct: 100 EAPTTTDTRAPSSIREIDGSLGSSAWVC 127
Score = 33.3 bits (75), Expect = 0.39
Identities = 16/88 (18%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
G S T+ + T+P + T+ + + T+ + + T + + T+ + + T+ +P+ + +
Sbjct: 41 GQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTE-APSKNTTTS 99
Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYSP 1633
+P + T S S S ++
Sbjct: 100 EAPTTTDTRAPSSIREIDGSLGSSAWVC 127
Score = 32.9 bits (74), Expect = 0.65
Identities = 17/86 (19%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--- 1600
S + T+ PT+ + + T+ + T+ + + T+ + + T+ + + +PS + T+
Sbjct: 43 SQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTT-TTTTTTTTTEAPSKNTTTSEA 101
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSP 1626
P+ + T S S S A+
Sbjct: 102 PTTTDTRAPSSIREIDGSLGSSAWVC 127
Score = 32.9 bits (74), Expect = 0.65
Identities = 15/86 (17%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 1572 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS--- 1628
S + + T+ + PT+ + + T+ + T+ + + T+ + T+ + +P+ + T+
Sbjct: 43 SQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTT-TTTTTTTTTEAPSKNTTTSEA 101
Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSP 1654
P+ + T S S S ++
Sbjct: 102 PTTTDTRAPSSIREIDGSLGSSAWVC 127
Score = 32.9 bits (74), Expect = 0.71
Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 1593 SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1652
S + + T+ + PT+ + T+ T+ + T+ + + T+ + + +PS + T+
Sbjct: 43 SQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTT-TTTTTTTTTEAPSKNTTTSEA 101
Query: 1653 SPTSPSYSPTSPAYSPTSPGYS 1674
T+ + +P+S S G S
Sbjct: 102 PTTTDTRAPSSIREIDGSLGSS 123
Score = 32.5 bits (73), Expect = 0.84
Identities = 15/86 (17%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS--- 1614
S + + T+ + PT+ + + T+ + T+ + + T+ + + T+ + + +P+ + T+
Sbjct: 43 SQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTT-TTTTTTTTTEAPSKNTTTSEA 101
Query: 1615 PAYSPTSPAYSPTSPSYSPTSPSYSP 1640
P + T S S S ++
Sbjct: 102 PTTTDTRAPSSIREIDGSLGSSAWVC 127
Score = 32.1 bits (72), Expect = 1.2
Identities = 15/86 (17%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS--- 1621
S + + T+ + PT+ + + T+ + T+ + + T+ + + T+ + +P+ + T+
Sbjct: 43 SQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTT-TTTTTTTTTEAPSKNTTTSEA 101
Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSP 1647
P + T S S S ++
Sbjct: 102 PTTTDTRAPSSIREIDGSLGSSAWVC 127
Score = 31.8 bits (71), Expect = 1.3
Identities = 16/88 (18%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 1518 GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1577
G S T+ + T+P + T+ T + ++ + T + T+ + + T+ +P+ + +
Sbjct: 41 GQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTE-APSKNTTTS 99
Query: 1578 TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
+P+ + T S S S ++
Sbjct: 100 EAPTTTDTRAPSSIREIDGSLGSSAWVC 127
Score = 31.8 bits (71), Expect = 1.4
Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 1600 SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--- 1656
S + + T+ PT+ + T+ T+ + + T+ + + T+ + + +PS + T+
Sbjct: 43 SQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTT-TTTTTTTTTEAPSKNTTTSEA 101
Query: 1657 PSYSPTSPAYSPTSPGYSPTSPSYSP 1682
P+ + T S S S ++
Sbjct: 102 PTTTDTRAPSSIREIDGSLGSSAWVC 127
Score = 31.8 bits (71), Expect = 1.7
Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 1523 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1582
S + T+ PT+ T + ++ T+ + T+ + + T+ T+ + +P+ +
Sbjct: 43 SQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTT-----TTTTEAPSKNTT 97
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1612
+ +P+ + T S S S A+
Sbjct: 98 TSEAPTTTDTRAPSSIREIDGSLGSSAWVC 127
Score = 31.0 bits (69), Expect = 2.9
Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 1511 GYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSP 1570
G S T+ + T+P + T+ + T+ T + + + T+ + T+ +P+ + +
Sbjct: 41 GQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTE-APSKNTTTS 99
Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1598
+P+ + T S S S ++
Sbjct: 100 EAPTTTDTRAPSSIREIDGSLGSSAWVC 127
Score = 30.6 bits (68), Expect = 3.3
Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--- 1663
S + T+ PT+ + T+ + T+ + + T+ + + T+ + + +PS + T+
Sbjct: 43 SQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTT-TTTTTTTTTEAPSKNTTTSEA 101
Query: 1664 PAYSPTSPGYSPTSPSYSPTSPTYSP 1689
P + T S S S +
Sbjct: 102 PTTTDTRAPSSIREIDGSLGSSAWVC 127
Score = 30.2 bits (67), Expect = 4.9
Identities = 14/80 (17%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1673
S + T+ PT+ + + T+ + T+ + + T+ + + T+ + + +P+ + T+
Sbjct: 43 SQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTT-TTTTTTTTTEAPSKNTTTSEA 101
Query: 1674 SPTSPSYSPTSPTYSPTSPS 1693
T+ + +P+S S
Sbjct: 102 PTTTDTRAPSSIREIDGSLG 121
Score = 29.4 bits (65), Expect = 9.5
Identities = 15/88 (17%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 1504 GYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSP 1563
G S ++ + T+P + T+ + T+ + T T + ++ + T+ +P+ + +
Sbjct: 41 GQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTE-APSKNTTTS 99
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1591
+P+ + T S S S ++
Sbjct: 100 EAPTTTDTRAPSSIREIDGSLGSSAWVC 127
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 38.2 bits (89), Expect = 0.044
Identities = 20/108 (18%), Positives = 33/108 (30%), Gaps = 6/108 (5%)
Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
P P ++ + A P++ + S SP+ S + PS ++ + T P
Sbjct: 372 GRGPK-QHIKPVFTQPAAAPQPSAA----AAASPSPSQSSAAAQ-PSAPQSATQPAGTPP 425
Query: 1665 AYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSP 1712
S P P +P + SL S P
Sbjct: 426 TVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRP 473
Score = 37.1 bits (86), Expect = 0.100
Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 4/105 (3%)
Query: 1597 SPTSPSYSPTSPAYSPTSPAYSP---TSPAYSPTSPSYSPTSPSYSP-TSPSYSPTSPSY 1652
S P ++ + A P + + SP+ S + + T P+ +P + S
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSV 429
Query: 1653 SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
P + P S S + P
Sbjct: 430 DPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPI 474
Score = 36.7 bits (85), Expect = 0.11
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 4/95 (4%)
Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPS 1602
S G P + + PS + + S SP+ S + + T P+ +P + S
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPS-AAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVS 428
Query: 1603 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
P + P +P + S
Sbjct: 429 VDPPAAV--PVNPPSTAPQAVRPAQFKEEKKIPVS 461
Score = 36.7 bits (85), Expect = 0.12
Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 6/96 (6%)
Query: 1539 TYSPSSPGYSPTSPAYSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSP 1594
S P ++ + + P + S SP+ S + + T P+ +P +
Sbjct: 368 DASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
S P + P +P + S
Sbjct: 428 SVDPPAA--VPVNPPSTAPQAVRPAQFKEEKKIPVS 461
Score = 36.7 bits (85), Expect = 0.14
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 5/97 (5%)
Query: 1506 SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 1565
S P ++ + P+ + + + SPS + A + + T
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPS----AAAAASPSPSQSSAAAQPSAPQSATQP-AGTP 424
Query: 1566 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1602
P+ S P+ P +P + S
Sbjct: 425 PTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVS 461
Score = 36.7 bits (85), Expect = 0.15
Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 6/98 (6%)
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSP---TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1583
S P ++ + P + + SP+ S + PS ++ + T P+ S
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQ-PSAPQSATQPAGTPPTVS 428
Query: 1584 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
P+ P +P T+P + S S
Sbjct: 429 VDPPAAVPVNP--PSTAPQAVRPAQFKEEKKIPVSKVS 464
Score = 35.9 bits (83), Expect = 0.21
Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 6/100 (6%)
Query: 1572 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP-TSPAYSPTSPS 1630
S P + + PS + + S SP+ + + A T PA +P + S
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPS-AAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVS 428
Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
P + P +P T+P + S S
Sbjct: 429 VDPPAA--VPVNP--PSTAPQAVRPAQFKEEKKIPVSKVS 464
Score = 34.8 bits (80), Expect = 0.54
Identities = 11/84 (13%), Positives = 22/84 (26%)
Query: 1670 SPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSP 1729
S G P + + PS ++ + + A+ + T P S
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSV 429
Query: 1730 TSSSYSPTSPSYSPSSPTYSPSSP 1753
+ P +P +
Sbjct: 430 DPPAAVPVNPPSTAPQAVRPAQFK 453
Score = 33.2 bits (76), Expect = 1.7
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 7/102 (6%)
Query: 1513 SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTS 1572
S P ++ + P++ + SP S + PS ++ + T
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAA-----QPSAPQSATQPAGTP 424
Query: 1573 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
P+ S P+ P +P T+P + S S
Sbjct: 425 PTVSVDPPAAVPVNP--PSTAPQAVRPAQFKEEKKIPVSKVS 464
Score = 32.8 bits (75), Expect = 1.8
Identities = 17/101 (16%), Positives = 27/101 (26%), Gaps = 9/101 (8%)
Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1617
S P + + PS + + S SP+ S + A P
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPS-AAAAASPSPSQSSAAAQPS---APQSATQP----- 420
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
+ T P S P+ P +P + S
Sbjct: 421 AGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVS 461
Score = 32.8 bits (75), Expect = 2.2
Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 7/114 (6%)
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSP---TSPAYSPTSPAYSPTSPSYSP-TSPSYSPTSPSY 1645
S P ++ + A P + + SP+ + + + T P+ +P + S
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSV 429
Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
P + P +P + S S S P
Sbjct: 430 DPPAA--VPVNPPSTAPQAVRPAQFKEEKKIPVSKVS-SLGPSTLRPIQEKAEQ 480
Score = 32.4 bits (74), Expect = 2.4
Identities = 15/92 (16%), Positives = 25/92 (27%), Gaps = 4/92 (4%)
Query: 1486 GGMAFSPTSSPGYSPSSPGYSPSS---PGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSP 1542
GG P ++ + PS+ SP+ + + + T PT S
Sbjct: 371 GGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQP-AGTPPTVSV 429
Query: 1543 SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1574
P P +P + S
Sbjct: 430 DPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVS 461
Score = 32.1 bits (73), Expect = 3.2
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 7/97 (7%)
Query: 1621 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY 1680
S P + + PS + + S SP+ S + A + + +
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPS-AAAAASPSPSQSSAAAQPSAPQSATQ----PAGT- 423
Query: 1681 SPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
PT P + NP S ++ +
Sbjct: 424 PPTVSVDPPAAVPVNPPSTA-PQAVRPAQFKEEKKIP 459
Score = 31.7 bits (72), Expect = 4.2
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1608
P P ++ + + P++ + + SPS S + PS ++ + T P
Sbjct: 372 GRGPK-QHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAA-----QPSAPQSATQPAGTPP 425
Query: 1609 AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
S PA P +P + S
Sbjct: 426 TVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVS 461
Score = 31.7 bits (72), Expect = 4.9
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 5/97 (5%)
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
S P ++ + + P++ + + SPS S + PS ++ + T
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAA-----QPSAPQSATQPAGTP 424
Query: 1615 PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
P S PA P +P + S
Sbjct: 425 PTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVS 461
Score = 30.9 bits (70), Expect = 8.7
Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 6/109 (5%)
Query: 1616 AYSPTSPAYSPTSPSYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PAYSPTSPGY 1673
A P P ++ P + + + SP+ S + +P S + T P
Sbjct: 369 ASGGRGPK-QHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTV 427
Query: 1674 SPTSPSYSPTSPTYSP---TSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
S P+ P +P + P+ + K S S L P
Sbjct: 428 SVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQE 476
Score = 30.5 bits (69), Expect = 9.5
Identities = 13/100 (13%), Positives = 31/100 (31%), Gaps = 5/100 (5%)
Query: 1653 SPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSP 1712
S P ++ + P+ + + + SP+ S Q + + + + P
Sbjct: 370 SGGRGPKQHIKPVFTQPAAAPQPS----AAAAASPSPSQSSAAAQPSAPQSATQPAGTPP 425
Query: 1713 RLSPASPYS-PTSPNYSPTSSSYSPTSPSYSPSSPTYSPS 1751
+S P + P +P + + + S
Sbjct: 426 TVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSS 465
>gnl|CDD|220944 pfam11018, Cuticle_3, Pupal cuticle protein C1. Insect cuticles are
composite structures whose mechanical properties are
optimised for biological function. The major components
are the chitin filament system and the cuticular
proteins, and the cuticle's properties are determined
largely by the interactions between these two sets of
molecules. The proteins can be ordered by species.
Length = 164
Score = 36.5 bits (84), Expect = 0.049
Identities = 29/146 (19%), Positives = 59/146 (40%), Gaps = 24/146 (16%)
Query: 1567 SYSPTSPSYSPTSPSYSP-TSPSYSPT--SPSYSPTSPSYSP-TSPAYSPTSPAYSPTSP 1622
S + +P YS S + ++ +Y P +Y+ +P+ +P Y + AY+ +
Sbjct: 26 SKAVDTP-YSSVRKSDTRISNNAYQPAYAKTAYAYAAPAVYAAAAPVY--AAHAYAAPAV 82
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
Y+ + +P Y+ +P+ + + +Y+ +P Y A +P
Sbjct: 83 HYAAAAHYAAPAYAKYAYAAPAVTAKA-AYAAPAPVYKTAYAAAAPA------------- 128
Query: 1683 TSPTYSPTSPSYNPQSAKYSPSLAYS 1708
Y+ +P + YSP+ A S
Sbjct: 129 ---VYAHAAPVVATATVAYSPAAAVS 151
Score = 36.5 bits (84), Expect = 0.055
Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 9/117 (7%)
Query: 1522 TSPGYSPT--SPGYSPTSPTYSP-SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
++ Y P Y+ +P ++P Y + AY+ + Y+ + +P Y+
Sbjct: 44 SNNAYQPAYAKTAYAYAAPAVYAAAAPVY--AAHAYAAPAVHYAAAAHYAAPAYAKYAYA 101
Query: 1579 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
+P+ + + +Y+ +P Y + +P Y+ +P + + AYSP + + S S
Sbjct: 102 APAVTAKA-AYAAPAPVYKTAYAAAAPAV--YAHAAPVVATATVAYSP-AAAVSHMS 154
Score = 34.6 bits (79), Expect = 0.21
Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 8/124 (6%)
Query: 1623 AYSPTSPSYSP-TSPSYSPT--SPSYSPTSPSYSP-TSPSYSPTSPAYSPTSPGYSPTSP 1678
YS S + ++ +Y P +Y+ +P+ +P Y + AY+ + Y+ +
Sbjct: 32 PYSSVRKSDTRISNNAYQPAYAKTAYAYAAPAVYAAAAPVY--AAHAYAAPAVHYAAAAH 89
Query: 1679 SYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTS 1738
+P Y+ +P+ ++A +P+ Y + +PA Y+ +P + + +YSP +
Sbjct: 90 YAAPAYAKYAYAAPAVTAKAAYAAPAPVYKTAYAAAAPAV-YAHAAPVVATATVAYSP-A 147
Query: 1739 PSYS 1742
+ S
Sbjct: 148 AAVS 151
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function
prediction only].
Length = 872
Score = 38.3 bits (89), Expect = 0.049
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
TS ++ P SPT + + +YS TS TS + T T+ S SPT
Sbjct: 768 TSGTFTAEVPQ-SPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPT-QT 825
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTS 1635
SPT ++ + TSPS + T
Sbjct: 826 TSPTQT----STSTTTTTSPSQTTTG 847
Score = 37.5 bits (87), Expect = 0.074
Identities = 33/147 (22%), Positives = 50/147 (34%), Gaps = 8/147 (5%)
Query: 1503 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYS 1562
S + G + T G P + PA +
Sbjct: 709 TTLSSEAKNPDTVKIGQALTVYGSLEVFPAGENWGFIPTTKRVKVRIMDPASGTGTSI-- 766
Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
TS +++ P SPT + + +YS TS TS + T T+ + SPT
Sbjct: 767 TTSGTFTAEVPQ-SPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPT-Q 824
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
SPT S + + + TSPS + T
Sbjct: 825 TTSPTQTS----TSTTTTTSPSQTTTG 847
Score = 37.1 bits (86), Expect = 0.11
Identities = 29/94 (30%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
TS + S T A P SP + T S ++ YS TS TS + T T+
Sbjct: 763 GTSITTSGTFTAEVPQSP--TKTETTLSYSA--YSNTSILIETTSVVITKTVTQTQTTTS 818
Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
S SPT SPT ++ + + TSP+ + T
Sbjct: 819 SPSPT-QTTSPTQT----STSTTTTTSPSQTTTG 847
Score = 36.0 bits (83), Expect = 0.23
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 1613 TSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
TS ++ P SPT + + +YS TS TS + T T+ + SPT
Sbjct: 768 TSGTFTAEVPQ-SPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQT- 825
Query: 1673 YSPTSPSYSPTSPTYSPTSPS 1693
TSP+ ++ T + TSPS
Sbjct: 826 ---TSPT-QTSTSTTTTTSPS 842
Score = 36.0 bits (83), Expect = 0.26
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 1578 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
TS +++ P SPT + + +YS TS TS + T T+ S SPT +
Sbjct: 768 TSGTFTAEVPQ-SPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTT 826
Query: 1638 YSPTSPSYSPTSPSYSPTSPSYSPTS 1663
SPT S + + + TSPS + T
Sbjct: 827 -SPTQTS----TSTTTTTSPSQTTTG 847
Score = 33.3 bits (76), Expect = 1.4
Identities = 14/74 (18%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 1674 SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSS 1733
P SP+ T T S ++ S + + S + + + +SP+ + T+S
Sbjct: 776 VPQSPT--KTETTLSYSAYSNTSILIETT-----SVVITKTVTQTQTTTSSPSPTQTTSP 828
Query: 1734 YSPTSPSYSPSSPT 1747
++ + + +SP+
Sbjct: 829 TQTSTSTTTTTSPS 842
Score = 31.0 bits (70), Expect = 8.1
Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 1641 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAK 1700
TS +++ P SPT + + AYS TS TS + T T+ S +P
Sbjct: 768 TSGTFTAEVPQ-SPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTT 826
Query: 1701 YSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPT 1737
SP + T+ SP+ ++
Sbjct: 827 --------------SPTQTSTSTTTTTSPSQTTTGGG 849
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 37.7 bits (88), Expect = 0.049
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1628
+ T P+ +P + T+P+ S T + +P+ P A S A + + A +
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQA-NVDTAATPAPA 226
Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSP 1654
+P + PT ++P+ P
Sbjct: 227 APATPDGAAPLPTD-QAGVSTPAADP 251
Score = 37.7 bits (88), Expect = 0.052
Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 1539 TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1598
T + + P +P A T+P+ S T + +P+ P + +PS + + +P
Sbjct: 166 TSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNA--VVAPSQANVDTAATP 223
Query: 1599 T-SPSYSPTSPAYSPTSPAYSPTSPAYSP 1626
+ +P A PT A ++PA P
Sbjct: 224 APAAPATPDGAAPLPTDQA-GVSTPAADP 251
Score = 36.5 bits (85), Expect = 0.11
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
+ T PA +P A T+P+ S T + +P+ P + +PS + A +P
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNA--VVAPSQANVDTAATPAP 225
Query: 1671 PGYSPTSPSYSPTSPT 1686
P +P + PT
Sbjct: 226 AA--PATPDGAAPLPT 239
Score = 36.5 bits (85), Expect = 0.11
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT- 1641
+ T P+ +P + T+P+ S T + +PA P A +PS + + +P
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNA--VVAPSQANVDTAATPAP 225
Query: 1642 SPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
+ +P + PT ++PA P
Sbjct: 226 AAPATPDGAAPLPTD-QAGVSTPAADP 251
Score = 36.5 bits (85), Expect = 0.11
Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
+ T P+ +P + T+P+ S T + +PA P A S A + + + +
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQA-NVDTAATPAPA 226
Query: 1636 PSYSPTSPSYSPTSPSYSPTSPSYSP 1661
+P + PT ++P+ P
Sbjct: 227 APATPDGAAPLPTD-QAGVSTPAADP 251
Score = 36.5 bits (85), Expect = 0.12
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTS 1621
+ T P+ +P + T+P+ S T + +P+ P + S A + + A +
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQA-NVDTAATPAPA 226
Query: 1622 PAYSPTSPSYSPTSPSYSPTSPSYSP 1647
+P + PT ++P+ P
Sbjct: 227 APATPDGAAPLPTD-QAGVSTPAADP 251
Score = 36.2 bits (84), Expect = 0.16
Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
+ T P+ +P + T+P+ S T + +P+ P + +PS + A +P
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNA--VVAPSQANVDTAATPAP 225
Query: 1615 PAYSPTSPAYSPTSPSYSPTSPSYSP 1640
A + A + ++P+ P
Sbjct: 226 AAPATPDGAAPLPTDQAGVSTPAADP 251
Score = 35.0 bits (81), Expect = 0.31
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 1677
+ T PA +P + T+P+ S T + +P+ P + S A + + +
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQA-NVDTAATPAPA 226
Query: 1678 PSYSPTSPTYSPTSPSYNPQSA 1699
+P PT + A
Sbjct: 227 APATPDGAAPLPTDQAGVSTPA 248
Score = 34.2 bits (79), Expect = 0.54
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 1660 SPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
+ T PA +P T+P+ S T + +P+ +PQ PS + A+
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVA-----PSQANVDTAAT 222
Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSS 1752
+P +P ++ PT S+P P++
Sbjct: 223 PAPA-APATPDGAAPLPTD-QAGVSTPAADPNA 253
Score = 33.8 bits (78), Expect = 0.82
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
+ T P +P+ T+P S T + +P+ P + +PS + + +P
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNA--VVAPSQANVDTAATPAP 225
Query: 1594 PSYSPTSPSYSPTSP--AYSPTSPAYSP 1619
+ P +P + P ++PA P
Sbjct: 226 AA--PATPDGAAPLPTDQAGVSTPAADP 251
Score = 33.1 bits (76), Expect = 1.2
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 6/88 (6%)
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
+ T P +P ++P S T + +P+ P + +PS + + +P
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNA--VVAPSQANVDTAATPAP 225
Query: 1587 PSYSPTSPSYSPTSP--SYSPTSPAYSP 1612
+ P +P + P ++PA P
Sbjct: 226 AA--PATPDGAAPLPTDQAGVSTPAADP 251
Score = 33.1 bits (76), Expect = 1.3
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 1716 PASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAG 1775
P + T P +P ++ T+P+ S + + +P N +PS +A
Sbjct: 163 PLDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAA- 221
Query: 1776 YSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKN 1807
+P+ + + P ST D N
Sbjct: 222 -TPAPAAPATPDGAAPLPTDQAGVSTPAADPN 252
Score = 32.7 bits (75), Expect = 1.7
Identities = 15/80 (18%), Positives = 30/80 (37%)
Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSL 1705
+ T P+ +P + T+P S T + +P+ P S + +A +P+
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAA 227
Query: 1706 AYSPSSPRLSPASPYSPTSP 1725
+P P ++P
Sbjct: 228 PATPDGAAPLPTDQAGVSTP 247
Score = 32.3 bits (74), Expect = 2.2
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 1578 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
TS + P + +PT+ + A +P A S + + T
Sbjct: 166 TSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAP 225
Query: 1638 YSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
+P +P + P+ S P
Sbjct: 226 AAPATPDGAAPLPT-DQAGVSTPAADP 251
Score = 31.9 bits (73), Expect = 2.8
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 1/88 (1%)
Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
TS + P + +PT+ + + +P A S + + T
Sbjct: 166 TSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAP 225
Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
+P +P + P+ S P+
Sbjct: 226 AAPATPDGAAPLPT-DQAGVSTPAADPN 252
Score = 31.9 bits (73), Expect = 3.0
Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
+ T PA +P A T+P S T + + +P + S + + T
Sbjct: 168 TTTDPATTPAPAAPVDTTPTNSQTPA----VATAPAPAVDPQQNAVVAPSQANVDTAATP 223
Query: 1664 PAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
+P +P + P+ + P+
Sbjct: 224 APAAPATPDGAAPLPT-DQAGVSTPAADPN 252
Score = 31.9 bits (73), Expect = 3.1
Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 1/88 (1%)
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
TS P + +PT+ + + +P + S + + T
Sbjct: 166 TSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAP 225
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
+P +P + P S P+
Sbjct: 226 AAPATPDGAAPLPT-DQAGVSTPAADPN 252
>gnl|CDD|221931 pfam13136, DUF3984, Protein of unknown function (DUF3984). This
family of proteins is functionally uncharacterized. This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 393 and 442 amino acids
in length.
Length = 301
Score = 37.4 bits (87), Expect = 0.059
Identities = 28/107 (26%), Positives = 35/107 (32%), Gaps = 10/107 (9%)
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLA 1706
SY+P P+ S S PT+PG S S S + S +P S +L
Sbjct: 29 ERDYSYAPHPPTTSYLSSKSVPTTPGILSHSRSPSRSRLHKRKKSSRRSPMSD----TLL 84
Query: 1707 YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
S SS L S S TSP SS +
Sbjct: 85 KSKSSAHLLHH------QSTRSHRRSKSGTTSPRKPSSSAHRRRNDS 125
Score = 31.2 bits (71), Expect = 4.4
Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
SY+P P+ S S PT+P S+S SPS S S SP S +
Sbjct: 29 ERDYSYAPHPPTTSYLSSKSVPTTPGILSHSR-SPSRSRLHKRKK--SSRRSPMSDT-LL 84
Query: 1683 TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLS 1715
S S ++ + + S + + S + S
Sbjct: 85 KS--KSSAHLLHHQSTRSHRRSKSGTTSPRKPS 115
Score = 31.2 bits (71), Expect = 5.0
Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTSPSYSPTSPSY-SPTSP-SY 1603
+Y+P P+ S S PT+P S+S SPS S + S S T S
Sbjct: 29 ERDYSYAPHPPTTSYLSSKSVPTTPGILSHSR-SPSRSRLHKRKKSSRRSPMSDTLLKSK 87
Query: 1604 SPTSPAYSPTSPAYSP-TSPAYSPTSPSYSPTSPSYSP 1640
S + ++ ++ S SP PS S
Sbjct: 88 SSAHLLHHQSTRSHRRSKSGTTSPRKPSSSAHRRRNDS 125
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 37.7 bits (87), Expect = 0.060
Identities = 28/119 (23%), Positives = 39/119 (32%), Gaps = 6/119 (5%)
Query: 1672 GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS 1731
G+ +Y P TY P +Y S Y P P+ PR +PA P P + S
Sbjct: 142 GHYAADGTYVPAGGTYIPAGGTYILASGTYIP-----PNPPREAPA-PGLPKTFTSSHGH 195
Query: 1732 SSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
P+ P+ + P P P+ +P P P T Q
Sbjct: 196 RHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ 254
Score = 35.4 bits (81), Expect = 0.28
Identities = 25/124 (20%), Positives = 39/124 (31%), Gaps = 6/124 (4%)
Query: 1532 GYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1591
G+ TY P+ Y P Y S +Y P +P +P T S ++P
Sbjct: 142 GHYAADGTYVPAGGTYIPAGGTYILASGTYIPPNPPREAPAPGLPKTFTSSHGHRHRHAP 201
Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
P+ PT +PA PT + P P+ + T
Sbjct: 202 -KPTQQPT-----VQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQG 255
Query: 1652 YSPT 1655
+ +
Sbjct: 256 HKRS 259
Score = 34.3 bits (78), Expect = 0.59
Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 1/112 (0%)
Query: 1508 SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPS 1567
S G+ Y P Y P Y S TY P +P +P T S
Sbjct: 139 SQVGHYAADGTYVPAGGTYIPAGGTYILASGTYIPPNPPREAPAPGLPKTFTSSHGHRHR 198
Query: 1568 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP 1619
++P P+ PT + + +P + +P +PA P
Sbjct: 199 HAP-KPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQP 249
Score = 33.9 bits (77), Expect = 0.75
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 1/101 (0%)
Query: 1526 YSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
Y P Y P TY +S Y P +P +P T S ++P P+ PT
Sbjct: 150 YVPAGGTYIPAGGTYILASGTYIPPNPPREAPAPGLPKTFTSSHGHRHRHAP-KPTQQPT 208
Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP 1626
+ + +P + +P +PA P
Sbjct: 209 VQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQP 249
Score = 33.9 bits (77), Expect = 0.76
Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 6/116 (5%)
Query: 1498 YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT 1557
Y P+ Y P+ Y S Y P +P +PG P + T S P PT
Sbjct: 150 YVPAGGTYIPAGGTYILASGTYIPPNPPREAPAPGL-PKTFTSSHGHRHRHAPKPTQQPT 208
Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
+P+ PT + + P P+ + T + +
Sbjct: 209 -----VQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRS 259
Score = 33.9 bits (77), Expect = 0.86
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 1/114 (0%)
Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT-SPSYS 1646
+Y P +Y P +Y S Y P +P +P T S ++P + +
Sbjct: 149 TYVPAGGTYIPAGGTYILASGTYIPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPT 208
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAK 1700
+P+ PT + + P P+ + T + +
Sbjct: 209 VQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRSREQ 262
Score = 33.5 bits (76), Expect = 1.2
Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 1/112 (0%)
Query: 1501 SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPS 1560
S G+ + Y P Y P Y S Y P +P +PG T +
Sbjct: 139 SQVGHYAADGTYVPAGGTYIPAGGTYILASGTYIPPNPPREAPAPGLPKTFTSSHGHRHR 198
Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1612
++P P+ PT + + +P + +P +PA P
Sbjct: 199 HAP-KPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQP 249
Score = 32.7 bits (74), Expect = 1.7
Identities = 22/119 (18%), Positives = 39/119 (32%), Gaps = 6/119 (5%)
Query: 1651 SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPS 1710
+Y P +Y P Y S Y P +P +P T S + +++P P+
Sbjct: 149 TYVPAGGTYIPAGGTYILASGTYIPPNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPT 208
Query: 1711 ------SPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDY 1763
P + + P P + PT + + P + GN ++
Sbjct: 209 VQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQGHKRSREQGNQEF 267
>gnl|CDD|225182 COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate
transport and metabolism].
Length = 355
Score = 37.4 bits (87), Expect = 0.065
Identities = 26/143 (18%), Positives = 41/143 (28%), Gaps = 5/143 (3%)
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
P + T P Y P P Y + + + S +Y+ S
Sbjct: 214 PVATATKPDYIPQIPFYVLVNLWMGGYAGGPPGEALSAGSPLNIDYYRVVAYTVLSDEAG 273
Query: 1661 PTSPAYSPTSPGYSPTSPSYSPTS---PTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
P S + + S + + P + S + YS P+
Sbjct: 274 PGSGVGDA--KTLTYAQETLSWSGNVGWRRVSSEPMSTVLNLGISNNWIYSSWQDTTFPS 331
Query: 1718 SPYSPTSPNYSPTSSSYSPTSPS 1740
+ YS Y P+ SS PS
Sbjct: 332 TMYSDYVRTYQPSDSSSPSCDPS 354
Score = 32.1 bits (73), Expect = 2.7
Identities = 29/139 (20%), Positives = 43/139 (30%), Gaps = 2/139 (1%)
Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSY-SPTSPTYSPTSPSYNPQSAKY 1701
P + T P Y P P Y + + G + S SP + Y +Y S +
Sbjct: 214 PVATATKPDYIPQIPFYVLVNLWMGGYAGGPPGEALSAGSPLNIDY-YRVVAYTVLSDEA 272
Query: 1702 SPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNP 1761
P + S + SS ++ S + SS + +
Sbjct: 273 GPGSGVGDAKTLTYAQETLSWSGNVGWRRVSSEPMSTVLNLGISNNWIYSSWQDTTFPST 332
Query: 1762 DYSPSSPQYSPSAGYSPSA 1780
YS Y PS SPS
Sbjct: 333 MYSDYVRTYQPSDSSSPSC 351
Score = 30.5 bits (69), Expect = 8.5
Identities = 24/145 (16%), Positives = 42/145 (28%), Gaps = 8/145 (5%)
Query: 1531 PGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1590
P + T P Y P P Y + + + S +Y+ S
Sbjct: 214 PVATATKPDYIPQIPFYVLVNLWMGGYAGGPPGEALSAGSPLNIDYYRVVAYTVLSDEAG 273
Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTS---PAYSPTSPA--YSPTSPSYSPTSPSYSPTSPSY 1645
P S + + + S + + P S + S+ T+
Sbjct: 274 P--GSGVGDAKTLTYAQETLSWSGNVGWRRVSSEPMSTVLNLGISNNWIYSSWQDTTFPS 331
Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTS 1670
+ S PS S +SP+ P+
Sbjct: 332 TMYSDYVRTYQPSDS-SSPSCDPSG 355
>gnl|CDD|215964 pfam00513, Late_protein_L2, Late Protein L2.
Length = 466
Score = 37.7 bits (88), Expect = 0.067
Identities = 27/116 (23%), Positives = 33/116 (28%), Gaps = 7/116 (6%)
Query: 1579 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1638
SP P TSP Y+ P + S
Sbjct: 327 SPIAPAEEIELQPLGEHSGDTSPVEDGLYDIYADPDPLDVELDTYSDDLLLDETTEDFST 386
Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYS------PTSPGYSPTSPSYSPTSPTYS 1688
S S S TS + + S +P P Y P SPG +P P P PT
Sbjct: 387 SQLVSSSSRTSTTNTTIPLSSTPDVPVYYGPDIVLPESPGTTPIVPV-PPDLPTVI 441
Score = 33.4 bits (77), Expect = 1.1
Identities = 22/106 (20%), Positives = 30/106 (28%), Gaps = 2/106 (1%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
P +SP Y+ P + S S S S TS
Sbjct: 338 QPLGEHSGDTSPVEDGLYDIYADPDPLDVELDTYSDDLLLDETTEDFSTSQLVSSSSRTS 397
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS 1639
+ + S +P P Y P SP +P P P P+
Sbjct: 398 TTNTTIPLSSTPDVPVYYGPD-IVLPESPGTTPIVPV-PPDLPTVI 441
Score = 33.4 bits (77), Expect = 1.1
Identities = 24/119 (20%), Positives = 32/119 (26%), Gaps = 8/119 (6%)
Query: 1611 SPTSPAYS----PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1666
SP +PA P TSP Y+ P + +
Sbjct: 327 SPIAPAEEIELQPLGEHSGDTSPVEDGLYDIYADPDPLDVELDTYSDDLLLDETTEDFST 386
Query: 1667 SPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
S S TS + + T P S P SP + + P P PT
Sbjct: 387 SQLVSSSSRTSTT-NTTIPLSSTPDVPVYYGPDIVLPE---SPGTTPIVPVPPDLPTVI 441
Score = 32.7 bits (75), Expect = 2.2
Identities = 23/108 (21%), Positives = 30/108 (27%), Gaps = 5/108 (4%)
Query: 1513 SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTS 1572
P TSP Y+ P + S S S S TS
Sbjct: 338 QPLGEHSGDTSPVEDGLYDIYADPDPLDVELDTYSDDLLLDETTEDFSTSQLVSSSSRTS 397
Query: 1573 PSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPAYSPTSPAY 1617
+ + S +P P Y P SP + P P PT +
Sbjct: 398 TTNTTIPLSSTPDVPVYYGPDIVLPE-SPGTTPIVPVPP-DLPTVIIH 443
Score = 31.1 bits (71), Expect = 6.8
Identities = 21/100 (21%), Positives = 25/100 (25%), Gaps = 6/100 (6%)
Query: 1474 SPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGY 1533
SPV D + Y + S S TS + T P
Sbjct: 348 SPVEDGLYDIYADPDPLDVELDTYSDDLLLDETTEDFSTSQLVSSSSRTSTT-NTTIPLS 406
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP 1573
S P G P SP + P P PT
Sbjct: 407 STPDV---PVYYGPDIVLPE-SPGTTPIVPVPPD-LPTVI 441
>gnl|CDD|177614 PHA03377, PHA03377, EBNA-3C; Provisional.
Length = 1000
Score = 37.7 bits (87), Expect = 0.069
Identities = 59/293 (20%), Positives = 83/293 (28%), Gaps = 29/293 (9%)
Query: 1508 SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP--AYSPTSPSYSPTS 1565
P P T P SPS G SP P++ +
Sbjct: 523 EESVTQPAKPHRKVQDGFQRSGRRQKRATPPKVSPSDRGPPKASPPVMAPPSTGPRVMAT 582
Query: 1566 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYS 1625
PS P + T P P S + PS +P A P+
Sbjct: 583 PSTGPRDMAPPSTGPRQQAKCKDGPPASGPHEKQPPSSAPRDMA------------PSVV 630
Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
S P S+ + P+S T +P PS+ P S
Sbjct: 631 RMFLRERLLEQSTGPKPKSFWEMRAGRDGSGIQQEPSSRRQPATQS--TPPRPSWLP-SV 687
Query: 1686 TYSPTSPSYNPQSAKYSPSLAYSPSSP-----RLSPASPYSPTSPNYSPTSSSYSPTSPS 1740
P+ + Q ++ S + SP+ P + P P + P +
Sbjct: 688 FVLPSVDAGRAQPSEESHLSSMSPTQPISHEEQPRYEDPDDPLDLSLHPDQAPPPSHQAP 747
Query: 1741 YSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYS-PSAPGYSPSSTSQYT 1792
YS + +PY P Y P +P GY P A G SS Y
Sbjct: 748 YSGHEEPQAQQAPY------PGYWEPRPPQAPYLGYQEPQAQGVQVSSYPGYA 794
Score = 37.3 bits (86), Expect = 0.081
Identities = 70/355 (19%), Positives = 96/355 (27%), Gaps = 62/355 (17%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSP--TYSPSSPGYS 1548
+ P+ P T P SP+ G SP PS+
Sbjct: 520 TEEEESVTQPAKPHRKVQDGFQRSGRRQKRATPPKVSPSDRGPPKASPPVMAPPSTGPRV 579
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS----------- 1597
+P+ P + T P P S + PS +P + S
Sbjct: 580 MATPSTGPRDMAPPSTGPRQQAKCKDGPPASGPHEKQPPSSAPRDMAPSVVRMFLRERLL 639
Query: 1598 PTSPSYSPTS---------------PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
S P S S PA T P S + S
Sbjct: 640 EQSTGPKPKSFWEMRAGRDGSGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVDAGRAQ 699
Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYS-PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS--A 1699
PS S SPT P P Y P P P +P +P S PQ+ A
Sbjct: 700 PSEESHLSSMSPTQPISHEEQPRYEDPDDPLDLSLHPDQAPPPSHQAPYSGHEEPQAQQA 759
Query: 1700 KY----------SPSLAYS-PSSPRLSPAS--------PYSPTSPNYSPTSSSYSPTSPS 1740
Y +P L Y P + + +S P Y S +Y P
Sbjct: 760 PYPGYWEPRPPQAPYLGYQEPQAQGVQVSSYPGYAGPWGLRAQHPRYR-HSWAYWSQYPG 818
Query: 1741 YSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
+ ++P P+ PQ+ SAG+ P S+ P
Sbjct: 819 HGHPQGPWAPRPPH-----------LPPQWDGSAGHGQDQVSQFPHLQSETGPPR 862
Score = 36.6 bits (84), Expect = 0.17
Identities = 43/227 (18%), Positives = 66/227 (29%), Gaps = 16/227 (7%)
Query: 1517 PGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1576
S P T P S + S P+ S SPT P P Y
Sbjct: 665 EPSSRRQPATQSTPPRPSWLPSVFVLPSVDAGRAQPSEESHLSSMSPTQPISHEEQPRYE 724
Query: 1577 -PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-----PAYSPTSPAYSPTSPAYSPTSPS 1630
P P P +P +P S P + P Y P +P P +
Sbjct: 725 DPDDPLDLSLHPDQAPPPSHQAPYSGHEEPQAQQAPYPGYWEPRPPQAPYLGYQEPQAQG 784
Query: 1631 YSPTS-PSYS------PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
+S P Y+ P Y + +Y P + ++P P P +
Sbjct: 785 VQVSSYPGYAGPWGLRAQHPRYRHSW-AYWSQYPGHGHPQGPWAPRPPHLPPQWDGSAGH 843
Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPT 1730
P ++ L+ P P + S ++P++S
Sbjct: 844 GQDQVSQFPHLQSETGPPRLQLSQVPQLP--YSQTLVSSSAPSWSSP 888
>gnl|CDD|118131 pfam09595, Metaviral_G, Metaviral_G glycoprotein. This is a viral
attachment glycoprotein from region G of metaviruses. It
is high in serine and threonine suggesting it is highly
glycosylated.
Length = 183
Score = 36.1 bits (83), Expect = 0.070
Identities = 29/149 (19%), Positives = 55/149 (36%), Gaps = 7/149 (4%)
Query: 1527 SPTSPGY-SPTSPTYSPSS---PGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1582
PT +PT+PT +P + + S T P+ + S + + + T+
Sbjct: 35 PPTESSKKTPTTPTDNPDTNPNSQHPTQQSTESSTLPAATSESHLETEPTSTPDTTNR-- 92
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
+ T PS S T + + + T+ + + + T+ S +
Sbjct: 93 -QQTVDRHTTPPSSSRTQTTQAVHEKKNTRTTSRTQTPPTTSTAAVQTTTTTNTSSTGKE 151
Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
P+ + P S T+ S+ TS A +S
Sbjct: 152 PTTTSVQPRSSATTQSHEETSQANPQSSA 180
Score = 36.1 bits (83), Expect = 0.083
Identities = 26/147 (17%), Positives = 53/147 (36%), Gaps = 4/147 (2%)
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1610
P S +PT + + + + S T P+ + S + + + T+
Sbjct: 35 PPTESSKKTPTTPTDNPDTNPNSQHPTQQSTESSTLPAATSESHLETEPTSTPDTTNRQQ 94
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
+ P+S T + + + + + TS + T+ + + +S PT+
Sbjct: 95 TVDRHTTPPSSSRTQTTQAVHEKKNTRTTSRTQTPPTTSTAAVQTTTTTNTSSTGKEPTT 154
Query: 1671 ----PGYSPTSPSYSPTSPTYSPTSPS 1693
P S T+ S+ TS +S S
Sbjct: 155 TSVQPRSSATTQSHEETSQANPQSSAS 181
Score = 35.8 bits (82), Expect = 0.11
Identities = 22/118 (18%), Positives = 43/118 (36%), Gaps = 3/118 (2%)
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
S T PA + S + + + T+ + T PS S T + + + T+
Sbjct: 67 SSTLPAATSESHLETEPTSTPDTTNR---QQTVDRHTTPPSSSRTQTTQAVHEKKNTRTT 123
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1665
+ + T+ S + P+ + P S T+ S+ TS + +S +
Sbjct: 124 SRTQTPPTTSTAAVQTTTTTNTSSTGKEPTTTSVQPRSSATTQSHEETSQANPQSSAS 181
Score = 30.8 bits (69), Expect = 4.2
Identities = 27/150 (18%), Positives = 55/150 (36%), Gaps = 6/150 (4%)
Query: 1491 SPTSSPGYSPSSPGYSPSS---PGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
PT S +P++P +P + + S T P + S + + T ++
Sbjct: 35 PPTESSKKTPTTPTDNPDTNPNSQHPTQQSTESSTLPAATSESHLETEPTSTPDTTNR-- 92
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
+ T PS S T + + + T+ + + + + T+ S +
Sbjct: 93 -QQTVDRHTTPPSSSRTQTTQAVHEKKNTRTTSRTQTPPTTSTAAVQTTTTTNTSSTGKE 151
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
P + P S T+ ++ TS + +S S
Sbjct: 152 PTTTSVQPRSSATTQSHEETSQANPQSSAS 181
Score = 30.4 bits (68), Expect = 6.5
Identities = 30/157 (19%), Positives = 57/157 (36%), Gaps = 12/157 (7%)
Query: 1588 SYSPTSPSY-SPTSPSYSPTS---PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSP 1643
S PT S +PT+P+ +P + + S T PA + S + + + T+
Sbjct: 33 SSPPTESSKKTPTTPTDNPDTNPNSQHPTQQSTESSTLPAATSESHLETEPTSTPDTTNR 92
Query: 1644 SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP 1703
+ + P+S T + + + + + TS T+ + N S P
Sbjct: 93 QQTVDRHTTPPSSSRTQTTQAVHEKKNTRTTSRTQTPPTTSTAAVQTTTTTNTSSTGKEP 152
Query: 1704 SLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPS 1740
+ S S T+ ++ TS + +S S
Sbjct: 153 TTT--------SVQPRSSATTQSHEETSQANPQSSAS 181
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 944
Score = 37.4 bits (87), Expect = 0.089
Identities = 35/236 (14%), Positives = 64/236 (27%), Gaps = 35/236 (14%)
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
S + + + P ++ S +P+ + T + S + + + + S T
Sbjct: 475 SSSLDADNSAVPEQIDSTAEQSVVNPSVTDTQVDDTSASN--NSAADNTVDDNYSAEDTL 532
Query: 1643 PSYSPTSPSYSPTSP---SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
S Y+ S +Y A+S S +S + Q +
Sbjct: 533 ESNGLDEGDYAQDSAPLDAYQDDYVAFSSESYNALSDDEQHSANV---QSAQSAAEAQPS 589
Query: 1700 KYSPSLAYSPSSPRLSPA----------------------SPYSPTSPNYSPTSSSYSPT 1737
S S + ++ S A SP S +P
Sbjct: 590 SQSLSPISAVTTAAASLADDDILDAVLAARDSLLSDLDALSPKEGDGKKSSADRKPKTPP 649
Query: 1738 S---PSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQ--YSPSAGYSPSAPGYSPSST 1788
S P+ + +S +A + +A S SAP P
Sbjct: 650 SRAPPASLSKPASSPDASQTSASFDLDPDFELATHQSVPEAALASGSAPAPPPVPD 705
>gnl|CDD|221734 pfam12722, Hid1, High-temperature-induced dauer-formation protein.
Hid1 (high-temperature-induced dauer-formation protein 1)
represents proteins of approximately 800 residues long
and is conserved from fungi to humans. It contains up to
seven potential transmembrane domains separated by
regions of low complexity. Functionally it might be
involved in vesicle secretion or be an inter-cellular
signalling protein or be a novel insulin receptor.
Length = 813
Score = 37.3 bits (87), Expect = 0.094
Identities = 28/135 (20%), Positives = 38/135 (28%), Gaps = 7/135 (5%)
Query: 1536 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1595
S A S + S + S SP S S P + + P S
Sbjct: 573 NLILDSSQEEDERSNQSASGSLSDNPSNDNDSRSP-SLSEVPEENKSLAITDDFDPASRE 631
Query: 1596 YSPTSPSYSPTSPAYSPTSPAYS----PTSPAYSPT-SPSYSPTSP-SYSPTSPSYSPTS 1649
S + + P+ + S +PA S S S T P S S
Sbjct: 632 NSTSEAAAPPSVNSVPLQLQGPSEKDRGKNPAGSLAFSRLNSATRPKWPSGLSSKSKEKF 691
Query: 1650 PSYSPTSPSYSPTSP 1664
P S S+ P
Sbjct: 692 PPTSDWVESWKGKLP 706
>gnl|CDD|216421 pfam01299, Lamp, Lysosome-associated membrane glycoprotein (Lamp).
Length = 305
Score = 36.6 bits (85), Expect = 0.10
Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 12/122 (9%)
Query: 1533 YSPTSPTYSPSSPGYSPTSPAYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1591
YS T T+S Y+ + P + T S + T PT+ +Y S + P
Sbjct: 1 YSVTELTFS-----YNLSDTTLFPNATSKGVKTVTSSTDTKA---PTNTTYRCVSSTTVP 52
Query: 1592 TSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
+ T + T AY + + T + +PS SPT SP +
Sbjct: 53 MTNV---TVTLHDVTLQAYLSNGTFSKTETRCEADTPSPTTVATPSPSPTPVPSSPAVGN 109
Query: 1652 YS 1653
YS
Sbjct: 110 YS 111
Score = 36.6 bits (85), Expect = 0.11
Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 10/114 (8%)
Query: 1554 YSPTSPS--YSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP----T 1606
YS T + Y+ + + P + T S + T PT+ +Y S + P T
Sbjct: 1 YSVTELTFSYNLSDTTLFPNATSKGVKTVTSSTDTKA---PTNTTYRCVSSTTVPMTNVT 57
Query: 1607 SPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
+ T AY + + T + +PS SPT SP +YS
Sbjct: 58 VTLHDVTLQAYLSNGTFSKTETRCEADTPSPTTVATPSPSPTPVPSSPAVGNYS 111
Score = 34.7 bits (80), Expect = 0.44
Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 16/124 (12%)
Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYS---PTSPTYSPTSPSYNPQSAKY 1701
YS T + S + S T+ + TS G + S PT+ TY S + P +
Sbjct: 1 YSVTELT---FSYNLSDTTLFPNATSKGVKTVTSSTDTKAPTNTTYRCVSSTTVPMT--- 54
Query: 1702 SPSLAYSPSSPRLSPASPYSPTSPNYSPTSS-SYSPTSPSYSPSSPTYSPSSP----YNA 1756
++ + L S + + + SPT+ + SPT PSSP Y+
Sbjct: 55 --NVTVTLHDVTLQAYLSNGTFSKTETRCEADTPSPTTVATPSPSPTPVPSSPAVGNYSV 112
Query: 1757 GGGN 1760
GN
Sbjct: 113 TNGN 116
Score = 32.8 bits (75), Expect = 1.4
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 9/117 (7%)
Query: 1582 YSPTSPS--YSPTSPSYSP-TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1638
YS T + Y+ + + P + T + + T PT+ Y S + P +
Sbjct: 1 YSVTELTFSYNLSDTTLFPNATSKGVKTVTSSTDTKA---PTNTTYRCVSSTTVPMTNV- 56
Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN 1695
T + T +Y + + T + +PS SPT SP +Y+
Sbjct: 57 --TVTLHDVTLQAYLSNGTFSKTETRCEADTPSPTTVATPSPSPTPVPSSPAVGNYS 111
Score = 32.8 bits (75), Expect = 1.6
Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 14/123 (11%)
Query: 1512 YSPTSP--GYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYS 1569
YS T Y+ + P + S T + S+ +PT+ Y S + P +
Sbjct: 1 YSVTELTFSYNLSDTTLFPNAT--SKGVKTVTSSTDTKAPTNTTYRCVSSTTVPMTNV-- 56
Query: 1570 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSP 1629
+ + + ++ ++S T +PS PT+ A SP SPT SP
Sbjct: 57 --TVTLHDVTLQAYLSNGTFSKTETRCEADTPS--PTTVA--TPSP--SPTPVPSSPAVG 108
Query: 1630 SYS 1632
+YS
Sbjct: 109 NYS 111
Score = 31.6 bits (72), Expect = 3.7
Identities = 24/117 (20%), Positives = 42/117 (35%), Gaps = 9/117 (7%)
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYS---PTSPSYSPTSPSYSPTSPSY 1645
YS T + S + S T+ + TS + + PT+ +Y S + P +
Sbjct: 1 YSVTELT---FSYNLSDTTLFPNATSKGVKTVTSSTDTKAPTNTTYRCVSSTTVPMTNV- 56
Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYS 1702
T + T +Y + + T + +P+ SPT +P YS
Sbjct: 57 --TVTLHDVTLQAYLSNGTFSKTETRCEADTPSPTTVATPSPSPTPVPSSPAVGNYS 111
>gnl|CDD|221509 pfam12287, Caprin-1_C, Cytoplasmic
activation/proliferation-associated protein-1 C term.
This family of proteins is found in eukaryotes. Proteins
in this family are typically between 343 and 708 amino
acids in length. This family is the C terminal region of
caprin-1. Caprin-1 is a protein involved in regulating
cellular proliferation. In mutated phenotypes, the G1
phase of the cell cycle is greatly lengthened, impairing
normal proliferation. The C terminal region of caprin-1
contains RGG motifs which are characteristic of RNA
binding domains. It is possible that caprin-1 functions
through an RNA binding mechanism.
Length = 319
Score = 36.5 bits (84), Expect = 0.10
Identities = 34/124 (27%), Positives = 45/124 (36%), Gaps = 6/124 (4%)
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTS-PAYSPTS 1670
P + P P+ S P P + PS P P PT P SPTS
Sbjct: 16 GQPLDPAIVSAQPMKPAQSMDLPQMVCPPVHSESRLSQPSAVPVQPE--PTQVPMVSPTS 73
Query: 1671 PGYSPTSPSYSPTSPTYS-PTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSP 1729
GY+ + P Y P+ P + +P A S + +P+S L AS P
Sbjct: 74 EGYTSSPPLYQPSHTAEPRPQTDPIDPIQASMSLNSEQTPTSSSLPAASQPQVFQTGSKP 133
Query: 1730 TSSS 1733
SS
Sbjct: 134 LHSS 137
Score = 36.1 bits (83), Expect = 0.13
Identities = 52/261 (19%), Positives = 75/261 (28%), Gaps = 27/261 (10%)
Query: 1551 SPAYSPTSPSYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTS 1607
P S P P+ S P P + PS P P PT P SPTS
Sbjct: 16 GQPLDPAIVSAQPMKPAQSMDLPQMVCPPVHSESRLSQPSAVPVQPE--PTQVPMVSPTS 73
Query: 1608 PAYSPTSPAYSPTSPAYS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY 1666
Y+ + P Y P+ A P + P S + +PTS S S + +
Sbjct: 74 EGYTSSPPLYQPSHTAEPRPQTDPIDPIQASM-SLNSEQTPTSSSLPAASQPQVFQTGSK 132
Query: 1667 SPTSPGYSPTSPSY----------SPTSPTYSPTSPSYNPQSAKYSPSLAYS-PSSPRLS 1715
S G + + + +P P P S Q +Y S S P+
Sbjct: 133 PLHSSGINVNAAPFQSMQTVFNMNAPVPPVNEPESLK---QQNQYQASYNQGFSSQPQHP 189
Query: 1716 PASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAG 1775
+ S +S + S P + + S G
Sbjct: 190 VEQTELQQEQLQTVVGSFHSQ------DQQAHQAASGHQQPSQQGPGFGRQGQSFYNSRG 243
Query: 1776 YSPSAPGYSPSSTSQYTPQTN 1796
S P + Y +N
Sbjct: 244 MSRGGPRNPRGMINGYRGPSN 264
>gnl|CDD|217330 pfam03035, RNA_capsid, Calicivirus putative RNA polymerase/capsid
protein.
Length = 226
Score = 35.8 bits (83), Expect = 0.12
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Query: 1505 YSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPT 1564
++P+S + S G++ + P+S + + + S S G S S +YS +S S S T
Sbjct: 106 WAPNSMATTSYSGGFTSSPVPVPPSSSSSASSVSSQSTQSTGLS--SSSYSSSSAS-SRT 162
Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
S + + P P T+ P+S + S + S P S T
Sbjct: 163 SSWVRSQNSNLEPFMPGALQTAWVTPPSSTASSSGTVSTVPKGVLDSWTP 212
Score = 35.8 bits (83), Expect = 0.15
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 21/87 (24%)
Query: 1725 PNYSPTSS-------SYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP--------- 1768
PN T+S S P PS S S+ + S S + G + YS SS
Sbjct: 108 PNSMATTSYSGGFTSSPVPVPPSSSSSASSVSSQSTQSTGLSSSSYSSSSASSRTSSWVR 167
Query: 1769 -QYSPSAGYSPSAPGYS----PSSTSQ 1790
Q S + P A + PSST+
Sbjct: 168 SQNSNLEPFMPGALQTAWVTPPSSTAS 194
Score = 34.3 bits (79), Expect = 0.43
Identities = 30/121 (24%), Positives = 45/121 (37%), Gaps = 11/121 (9%)
Query: 1680 YSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSP 1739
++P S + S + PS + S SS +S +YS +S+S S TS
Sbjct: 106 WAPNSMATTSYSGGFTSSPVPVPPSSSSSASSVSSQSTQSTGLSSSSYSSSSAS-SRTS- 163
Query: 1740 SYSPSSPTYSPSSPYNAGGGNPDY--SPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNR 1797
S S P+ G + PSS + S+G + P S +TP N
Sbjct: 164 --SWVRSQNSNLEPFMPGALQTAWVTPPSS--TASSSGTVSTVPKGVLDS---WTPAFNT 216
Query: 1798 D 1798
Sbjct: 217 R 217
Score = 31.6 bits (72), Expect = 2.7
Identities = 27/105 (25%), Positives = 35/105 (33%), Gaps = 6/105 (5%)
Query: 1452 SGTPYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPG 1511
+GT Y +S S S + S S+ SS YS SS
Sbjct: 101 NGTRYWAPNSMATTSYSGGF-TSSPVPVPPSSSSSASSVSSQSTQSTGLSSSSYSSSSAS 159
Query: 1512 YSPTSPGYSPTSPGYSPTSPGYSPTS----PTYSPSSPGYSPTSP 1552
S TS + P PG T+ P+ + SS G T P
Sbjct: 160 -SRTSSWVRSQNSNLEPFMPGALQTAWVTPPSSTASSSGTVSTVP 203
>gnl|CDD|139168 PRK12708, flgJ, peptidoglycan hydrolase; Reviewed.
Length = 134
Score = 34.8 bits (80), Expect = 0.13
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 77 PGHFGHLELAKPMFHIGFMKTVLSIMRSVCFNCSKILADEDD 118
G L+LA F F++TVL MRS S ++ADEDD
Sbjct: 22 NLEQGALKLAAQQFEAQFLQTVLKQMRSA----SDVMADEDD 59
>gnl|CDD|221480 pfam12238, MSA-2c, Merozoite surface antigen 2c. This family of
proteins is found in eukaryotes. Proteins in this family
are typically between 263 and 318 amino acids in length.
There is a conserved SFT sequence motif. MSA-2 is a
plasma membrane glycoprotein which can be found in
Babesia bovis species.
Length = 201
Score = 35.5 bits (82), Expect = 0.13
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 1581 SYSPTSPSYSPTSPSYSPTSPSYSP-TSPAYSPTSPAYSPTSPAYSPTSPSYSPT 1634
YSP S TS + P+ S +P TS +P +PA P PA +P S T
Sbjct: 141 YYSPKHSSSQGTSTT-RPSDGSATPNTSAPPTPGNPAAQPEKPAETPKGNGSSFT 194
Score = 34.8 bits (80), Expect = 0.23
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
YSP S TS + P+ S +P TS +P +P+ P PA +P G S T
Sbjct: 142 YSPKHSSSQGTSTT-RPSDGSATPNTSAPPTPGNPAAQPEKPAETPKGNGSSFT 194
Score = 34.0 bits (78), Expect = 0.40
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYS 1632
YSP S TS + P+ S +P TS +P +PA P PA +P S++
Sbjct: 141 YYSPKHSSSQGTSTT-RPSDGSATPNTSAPPTPGNPAAQPEKPAETP-----KGNGSSFT 194
Score = 32.9 bits (75), Expect = 1.1
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 1567 SYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1620
YSP S TS + P+ S +P TS +P +P+ P PA +P S T
Sbjct: 141 YYSPKHSSSQGTSTT-RPSDGSATPNTSAPPTPGNPAAQPEKPAETPKGNGSSFT 194
Score = 32.5 bits (74), Expect = 1.4
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 1491 SPTSSPGYSPSSPGYSP-SSPGYSPTSPGYSPTSPGYSPTSPGYSPT 1536
S + PS +P +S +P +P P P +P G S T
Sbjct: 148 SSQGTSTTRPSDGSATPNTSAPPTPGNPAAQPEKPAETPKGNGSSFT 194
Score = 32.5 bits (74), Expect = 1.4
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 1715 SPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
+PA YSP +SS + T+ PS + +P++ GNP P P +P
Sbjct: 137 APAEYYSPK-----HSSSQGTSTT---RPSDGSATPNTSAPPTPGNPAAQPEKPAETPK 187
Score = 32.5 bits (74), Expect = 1.6
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 1526 YSPTSPGYSPTS-PTYSPSSPGYSP-TSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
YSP S T PS +P TS +P +P+ P P+ +P S T
Sbjct: 142 YSPKHS--SSQGTSTTRPSDGSATPNTSAPPTPGNPAAQPEKPAETPKGNGSSFT 194
Score = 32.1 bits (73), Expect = 1.9
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
YSP S TS + P+ S +P TS +P +PA P P +P S T
Sbjct: 141 YYSPKHSSSQGTSTT-RPSDGSATPNTSAPPTPGNPAAQPEKPAETPKGNGSSFT 194
Score = 31.7 bits (72), Expect = 2.3
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 1745 SPTYSPSSPYNAGGGNPDYSPSSPQYSP--SAGYSPSAPGYSPSSTSQYTPQTN 1796
+P S +++ G PS +P SA +P P P ++ TP+ N
Sbjct: 137 APAEYYSPKHSSSQGTSTTRPSDGSATPNTSAPPTPGNPAAQPEKPAE-TPKGN 189
Score = 31.3 bits (71), Expect = 2.9
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1592
SP +S S G S T P+ +P+ TS +P +P+ P P+ +P S T
Sbjct: 141 YYSPKHSSSQ-GTSTTRPSDGSATPN---TSAPPTPGNPAAQPEKPAETPKGNGSSFT 194
Score = 31.3 bits (71), Expect = 3.2
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSP-TSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
YSP S TS P+ + +P TS +P +P+ P P+ +P S T
Sbjct: 141 YYSPKHSSSQGTSTT-RPSDGSATPNTSAPPTPGNPAAQPEKPAETPKGNGSSFT 194
Score = 31.3 bits (71), Expect = 3.8
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1606
YSP S TS + P+ S +P TS +P +P+ P P+ +P S T
Sbjct: 142 YSPKHSSSQGTSTT-RPSDGSATPNTSAPPTPGNPAAQPEKPAETPKGNGSSFT 194
Score = 30.9 bits (70), Expect = 4.5
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSP-TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSY 1694
YSP S TS + P+ S +P TS +P +P P P+ +P S+
Sbjct: 141 YYSPKHSSSQGTSTT-RPSDGSATPNTSAPPTPGNPAAQPEKPAETP-----KGNGSSF 193
Score = 30.5 bits (69), Expect = 5.1
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1662
YSP + TS P+ S +P TS +P +P+ P P+ +P S T
Sbjct: 142 YSPKHSSSQGTSTT-RPSDGSATPNTSAPPTPGNPAAQPEKPAETPKGNGSSFT 194
Score = 30.5 bits (69), Expect = 5.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
YSP S TS + P+ S +P TS +P +P+ P P+ +P S T
Sbjct: 141 YYSPKHSSSQGTSTT-RPSDGSATPNTSAPPTPGNPAAQPEKPAETPKGNGSSFT 194
Score = 30.5 bits (69), Expect = 5.6
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 1519 YSPTSP---GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPT 1571
YSP G S T P +P +S +P +PA P P+ +P S T
Sbjct: 142 YSPKHSSSQGTSTTRPSDGSATP---NTSAPPTPGNPAAQPEKPAETPKGNGSSFT 194
Score = 30.2 bits (68), Expect = 7.8
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 1547 YSPTSPAYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1599
YSP + TS + P+ S +P TS +P +P+ P P+ +P S T
Sbjct: 142 YSPKHSSSQGTSTT-RPSDGSATPNTSAPPTPGNPAAQPEKPAETPKGNGSSFT 194
Score = 30.2 bits (68), Expect = 8.5
Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 12/70 (17%)
Query: 1495 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1554
+P S SS G S T P +P TS +P +P P PA
Sbjct: 137 APAEYYSPK--HSSSQGTSTTRPSDGSATPN----------TSAPPTPGNPAAQPEKPAE 184
Query: 1555 SPTSPSYSPT 1564
+P S T
Sbjct: 185 TPKGNGSSFT 194
>gnl|CDD|227507 COG5180, PBP1, Protein interacting with poly(A)-binding protein [RNA
processing and modification].
Length = 654
Score = 36.6 bits (84), Expect = 0.15
Identities = 44/282 (15%), Positives = 73/282 (25%), Gaps = 22/282 (7%)
Query: 1521 PTSPGYSPTSPGYSPTSPTYSPSSPGYSP--TSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
G S S S P + + SPS T+ S TS
Sbjct: 354 ELKWG-SKPPWEAKAVSIATKVSKPKKESVRSGSKAAKKSPSTKHTTRSS--TSLRRRNH 410
Query: 1579 SPSYSPTSPSYSPTSPSYSPTS---PSYSPTSPAYSPTSPAYSPT-SPAYSPTSPSYSPT 1634
+ +P + S S + S P + +PT
Sbjct: 411 GSFFGAKNPHTNDAKRVLFGKSFNMFIKSKEAHDEKKKGDDASENMEPFFIEKPYFTAPT 470
Query: 1635 -SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPS 1693
+ + ++ P + + + S + P
Sbjct: 471 WLNTIEESYKTFFPDEDTAIQEAQTRFQQRQLNSMGNAVPGMNPAMGMNMGG--MMGFPM 528
Query: 1694 YNPQSAKYSPSLAYSPSSPRLSPASPYSPT------SPNYSPTSSSYSPTSPSYSPSSPT 1747
P SA +P + + + P+ P SP P S + +
Sbjct: 529 GGP-SASPNPMMNGFAAGS-MGMYMPFQPQPMFYHPSPQMMPVMGSNG--AEEGGGNISP 584
Query: 1748 YSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTS 1789
+ P+ AG G P + P P G S P P++ S
Sbjct: 585 HVPAGFMAAGPGAPMGAFGYPGGIPFQGMMGSGPSGMPANGS 626
>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription].
Length = 235
Score = 35.7 bits (83), Expect = 0.16
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 610 DTLVRIEKGELLSGTLCK-KTLGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQN 668
+R+ KGE SG + L + +LI I+ + G +AARKF + L
Sbjct: 98 GDYLRLGKGEEKSGGRRRESILADAFEALIGAIYLDSGLEAARKF-------ILKLFLPR 150
Query: 669 AFSIGIGDTIADAKT 683
I GD D KT
Sbjct: 151 LEEIDAGDQFKDPKT 165
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 36.6 bits (85), Expect = 0.18
Identities = 39/183 (21%), Positives = 73/183 (39%), Gaps = 15/183 (8%)
Query: 891 LDSLKMKKSEFDKAFRFEMDEENWNPNYMLQEYIDDLKTIKELRDVFDAEVQKLEADRYQ 950
LD L+ + E +K E+ EE +E D+LK ++E ++ + E+++LE++ +
Sbjct: 844 LDELEEELEELEKELE-ELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAE 902
Query: 951 LATEIATSGDSSWPLPVNLKRLIWNAQKTFKVDPRRPSDMHPMEVVEAVDKLQER---LK 1007
L EI + L L+RL + + D E+ +++L+E L
Sbjct: 903 LKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALG 962
Query: 1008 VVPGEDPLSVE--AQKNATLFFNILLRSTF-ASKRVLKE-----HRLTREAFEWVIGEIE 1059
V + ++E + R +K L E + RE F+ +I
Sbjct: 963 PV---NLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKIN 1019
Query: 1060 SRF 1062
F
Sbjct: 1020 ENF 1022
>gnl|CDD|150091 pfam09310, PD-C2-AF1, POU domain, class 2, associating factor 1.
Members of this family are transcriptional coactivators
that specifically associate with either OCT1 or OCT2,
through recognition of their POU domains. They are
essential for the response of B-cells to antigens and
required for the formation of germinal centres.
Length = 264
Score = 35.5 bits (81), Expect = 0.18
Identities = 44/167 (26%), Positives = 63/167 (37%), Gaps = 20/167 (11%)
Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS--PSY-SPTSPAYSPTSPAYSPTSPAYSPT 1627
PSYS P P S + + P+ + P + + SP S + P Y
Sbjct: 55 PLPSYSHMGPPCFPDSDAAALAEPAADEGALCPGWLAQPSPTASFQPLGHWAPYPDYFQH 114
Query: 1628 SPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
S + + PS T+ Y P PSY+ PS S + A++P + P S S P
Sbjct: 115 EASIA-SCPSL--TADMYIQPMCPSYALVGPS-SVLTLAHAPLFTNFGPISSSTPALVPQ 170
Query: 1687 YSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSS 1733
T + LAY P +P P S + Y P SS+
Sbjct: 171 IDVT---------EQDGPLAYFPWAP---PLSACPANTLQYQPASST 205
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex
non-fungal. The approx. 70 residue Med15 domain of the
ARC-Mediator co-activator is a three-helix bundle with
marked similarity to the KIX domain. The sterol
regulatory element binding protein (SREBP) family of
transcription activators use the ARC105 subunit to
activate target genes in the regulation of cholesterol
and fatty acid homeostasis. In addition, Med15 is a
critical transducer of gene activation signals that
control early metazoan development.
Length = 768
Score = 36.1 bits (83), Expect = 0.18
Identities = 32/103 (31%), Positives = 40/103 (38%), Gaps = 12/103 (11%)
Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
S SP + P P P+ P SP PG P P SP P+ P
Sbjct: 412 SSPSPVPQVQTNQSMPQPPQ--PSVP--SPGGPGSQP--PQSVSGGMIPSP--PALMPSP 463
Query: 1699 AKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSY-SPTSPS 1740
SP ++ SP+S R SP P +P SS SP +P
Sbjct: 464 ---SPQMSQSPASQRTIQQDMVSPGGPLNTPGQSSVNSPANPQ 503
Score = 34.6 bits (79), Expect = 0.59
Identities = 27/97 (27%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
S SP + P P P+ PS P P P PS P+ SP
Sbjct: 412 SSPSPVPQVQTNQSMPQPPQ--PSVPS--PGGPGSQPPQSVSGGMIPSPPALMPSPSP-Q 466
Query: 1692 PSYNPQSAKYSPSLAYSPSSPRLSP--ASPYSPTSPN 1726
S +P S + SP P +P +S SP +P
Sbjct: 467 MSQSPASQRTIQQDMVSPGGPLNTPGQSSVNSPANPQ 503
Score = 34.6 bits (79), Expect = 0.65
Identities = 32/121 (26%), Positives = 38/121 (31%), Gaps = 13/121 (10%)
Query: 1489 AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1548
+ PG S SP + P P P+ P SP PG
Sbjct: 394 NQGGLGANPMQQGQPGMMSSP------SPVPQVQTNQSMPQPP--QPSVP--SPGGPGSQ 443
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTS 1607
P PS PS SP S SP S + SP P +P S SP +
Sbjct: 444 PPQSVSGGMIPSPPALMPSPSP-QMSQSPASQR-TIQQDMVSPGGPLNTPGQSSVNSPAN 501
Query: 1608 P 1608
P
Sbjct: 502 P 502
Score = 32.7 bits (74), Expect = 2.1
Identities = 31/111 (27%), Positives = 37/111 (33%), Gaps = 12/111 (10%)
Query: 1531 PGYSPTSPTYSPS-SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1589
P S SP + P P P+ P SP P P P
Sbjct: 401 NPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQ--PSVP--SPGGPGSQP--PQSVSGGMIP 454
Query: 1590 SPTS--PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY-SPTSPS 1637
SP + PS SP S SP S + SP P +P S SP +P
Sbjct: 455 SPPALMPSPSP-QMSQSPASQR-TIQQDMVSPGGPLNTPGQSSVNSPANPQ 503
Score = 31.5 bits (71), Expect = 4.7
Identities = 23/83 (27%), Positives = 28/83 (33%), Gaps = 5/83 (6%)
Query: 1716 PASPYSPTSPNYSPTSSSYSPTSPSYS-PSSPTYSPSSPYNAGGGN--PDYSPSSPQYSP 1772
A+P P + S + S P P PS P G G+ P SP
Sbjct: 399 GANPMQQGQPGMMSSPSPVPQVQTNQSMPQPP--QPSVPSPGGPGSQPPQSVSGGMIPSP 456
Query: 1773 SAGYSPSAPGYSPSSTSQYTPQT 1795
A +P S S SQ T Q
Sbjct: 457 PALMPSPSPQMSQSPASQRTIQQ 479
Score = 31.5 bits (71), Expect = 5.5
Identities = 29/99 (29%), Positives = 34/99 (34%), Gaps = 16/99 (16%)
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS--PSYSP 1647
S SP + P P P+ P SP P P P SP + PS SP
Sbjct: 412 SSPSPVPQVQTNQSMPQPP--QPSVP--SPGGPGSQP--PQSVSGGMIPSPPALMPSPSP 465
Query: 1648 TSPSYSPTSPSYSPT---SPAYSPTSPGY----SPTSPS 1679
S SP S SP +PG SP +P
Sbjct: 466 -QMSQSPASQRTIQQDMVSPGGPLNTPGQSSVNSPANPQ 503
Score = 31.1 bits (70), Expect = 6.4
Identities = 33/110 (30%), Positives = 40/110 (36%), Gaps = 18/110 (16%)
Query: 1660 SPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
S SP + P P P+ P SP P P S S PS P L P
Sbjct: 412 SSPSPVPQVQTNQSMPQPPQ--PSVP--SPGGPGSQPPQ---SVSGGMIPSPPALMP--- 461
Query: 1720 YSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQ 1769
SP+ S SP S + SP P N G + SP++PQ
Sbjct: 462 ----SPSPQM---SQSPASQR-TIQQDMVSPGGPLNTPGQSSVNSPANPQ 503
>gnl|CDD|221404 pfam12067, Sox_C_TAD, Sox C-terminal transactivation domain. This
domain is found at the C-terminus of the Sox family of
transcription factors. It is found associated with
pfam00505. It binds to the Armadillo repeats (pfam00514)
in Catenin beta-1 (CTNNB1), which is involved in
transcriptional regulation. It functions as a
transactivating domain (TAD).
Length = 197
Score = 35.1 bits (81), Expect = 0.18
Identities = 24/126 (19%), Positives = 39/126 (30%), Gaps = 6/126 (4%)
Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY 1727
G+ P + Y +P +P A S +SP PY + +Y
Sbjct: 1 LPPAGHFRELPPLGASYDGYGLPTPEMSPLDALESEPAFFSPPCQEDCQMMPY-GYNSSY 59
Query: 1728 SPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSS 1787
+P ++ + SP + G P+ PQ Y P + P
Sbjct: 60 APQNAHAPALL-RQMAVTENIPQGSPAPSIMG----CPTPPQMYYGQMYVPECAKHHPVQ 114
Query: 1788 TSQYTP 1793
Q +P
Sbjct: 115 LGQLSP 120
Score = 35.1 bits (81), Expect = 0.21
Identities = 22/128 (17%), Positives = 35/128 (27%), Gaps = 8/128 (6%)
Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS--YSPTSPTYSPT 1690
+ P + Y +P SP S P + Y+ +
Sbjct: 1 LPPAGHFRELPPLGASYDGYGLPTPEMSPLDALES--EPAFFSPPCQEDCQMMPYGYNSS 58
Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASPYS--PTSPNYSPTSSSYSPTSPSYSPSSPTY 1748
N + +A + + P+ SPA PT P Y P + P
Sbjct: 59 YAPQNAHAPALLRQMAVTENIPQGSPAPSIMGCPTPPQMY-YGQMYVPECAKHHPVQ-LG 116
Query: 1749 SPSSPYNA 1756
S P +
Sbjct: 117 QLSPPPES 124
Score = 34.3 bits (79), Expect = 0.34
Identities = 26/135 (19%), Positives = 37/135 (27%), Gaps = 19/135 (14%)
Query: 1528 PTSPGYSPTSPTYSPSSPGYSPTSPAYSP-----TSPSYSPTSPS--YSPTSPSYSPTSP 1580
G+ P S GY +P SP + P++ Y +
Sbjct: 1 LPPAGHFRELPPLGASYDGYGLPTPEMSPLDALESEPAFFSPPCQEDCQMMPYGY---NS 57
Query: 1581 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS----PTSPAYSPTSPAYSPTSPSYSPTS- 1635
SY+P + + + SPA S PT P Y P + P
Sbjct: 58 SYAPQNAHAPALL-RQMAVTENIPQGSPAPSIMGCPTPPQMYYGQ-MYVPECAKHHPVQL 115
Query: 1636 --PSYSPTSPSYSPT 1648
S P S
Sbjct: 116 GQLSPPPESQHLDTL 130
Score = 32.8 bits (75), Expect = 1.2
Identities = 21/130 (16%), Positives = 34/130 (26%), Gaps = 8/130 (6%)
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSP-----TSPSYSPTSPS--YSPTSPSYSPTSP 1650
+ P + Y +P SP + P++ Y+ +
Sbjct: 1 LPPAGHFRELPPLGASYDGYGLPTPEMSPLDALESEPAFFSPPCQEDCQMMPYGYNSSYA 60
Query: 1651 SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPS 1710
+ +P+ G S PT P Y P+ AK+ P S
Sbjct: 61 PQNAHAPALLRQMAVTENIPQGSPAPSIMGCPTPPQMYYGQ-MYVPECAKHHPVQLGQLS 119
Query: 1711 SPRLSPASPY 1720
P S
Sbjct: 120 PPPESQHLDT 129
Score = 30.5 bits (69), Expect = 5.3
Identities = 25/130 (19%), Positives = 36/130 (27%), Gaps = 18/130 (13%)
Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSP-----TSPGYSPTSP--GYSPTSPTYSPSSPG 1546
G+ P S GY +P SP + P + Y+ S
Sbjct: 2 PPAGHFRELPPLGASYDGYGLPTPEMSPLDALESEPAFFSPPCQEDCQMMPYGYNSSYAP 61
Query: 1547 YSPTSPAYS---PTSPSYSPTSPSYS----PTSPSYSPTSPSYSPTSPSYSPTS---PSY 1596
+ +PA + + SP+ S PT P Y P + P S
Sbjct: 62 QNAHAPALLRQMAVTENIPQGSPAPSIMGCPTPPQMYYGQ-MYVPECAKHHPVQLGQLSP 120
Query: 1597 SPTSPSYSPT 1606
P S
Sbjct: 121 PPESQHLDTL 130
>gnl|CDD|221565 pfam12413, DLL_N, Homeobox protein distal-less-like N terminal. This
domain family is found in eukaryotes, and is
approximately 80 amino acids in length. The family is
found in association with pfam00046. This family is the N
terminal of a homeobox protein involved in embryonic
development and adult neural regeneration.
Length = 84
Score = 33.2 bits (76), Expect = 0.19
Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 8/82 (9%)
Query: 1721 SPTSPNYSPT-SSSYSPTSPS----YSPSSPTYSP--SSPYNAGGGNPDYSPSSPQYSPS 1773
SPT P + T S YSP + Y P P S YN G SP+
Sbjct: 3 SPTLPESTATDSGYYSPQGHNGYHGYCQPQPYGQPLNSYQYNLNGLGGS-GNYSPKSEYD 61
Query: 1774 AGYSPSAPGYSPSSTSQYTPQT 1795
GY Y SQ P
Sbjct: 62 LGYGSGYRQYGAYGRSQSPPNQ 83
>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729). This
family of proteins is found in viruses. Proteins in this
family are typically between 145 and 1707 amino acids in
length. The family is found in association with
pfam01443, pfam01661, pfam05417, pfam01660, pfam00978.
There is a single completely conserved residue L that may
be functionally important.
Length = 115
Score = 33.9 bits (78), Expect = 0.20
Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1617
S +SP ++ P P T P S P+ P+ P P PA
Sbjct: 26 SSCFSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAG 85
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPT 1641
P+ A P +P+ P P P
Sbjct: 86 PPSPLA--PPAPARKPPLPPPRPQ 107
Score = 32.7 bits (75), Expect = 0.41
Identities = 24/92 (26%), Positives = 27/92 (29%), Gaps = 8/92 (8%)
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT---SPSYSPTSPSYSPTSPS 1651
S S S +SP A+ P P T P S P P +P P P
Sbjct: 21 STSGFSSCFSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPV 80
Query: 1652 YSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
P P PA P P P P
Sbjct: 81 PGPAGPPSPLAPPA-----PARKPPLPPPRPQ 107
Score = 32.7 bits (75), Expect = 0.45
Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 2/89 (2%)
Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP 1619
S S S +SP ++ P P T P S P+ PA P P
Sbjct: 21 STSGFSSCFSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPV 80
Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1648
PA P+ +P +P+ P P P
Sbjct: 81 PGPAGPPSPL--APPAPARKPPLPPPRPQ 107
Score = 32.3 bits (74), Expect = 0.58
Identities = 23/87 (26%), Positives = 26/87 (29%), Gaps = 8/87 (9%)
Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYSPTSPSYSPTS 1600
S +SP A+ P P T P S P P +P P P P
Sbjct: 26 SSCFSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAG 85
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPT 1627
P PA PA P P P
Sbjct: 86 PPSPLAPPA-----PARKPPLPPPRPQ 107
Score = 32.0 bits (73), Expect = 0.93
Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 2/84 (2%)
Query: 1523 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1582
S +SP + P P T P S P+ P+ P P P+
Sbjct: 26 SSCFSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAG 85
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPT 1606
P+ +P +P+ P P P
Sbjct: 86 PPSPL--APPAPARKPPLPPPRPQ 107
Score = 30.4 bits (69), Expect = 2.9
Identities = 22/86 (25%), Positives = 28/86 (32%), Gaps = 6/86 (6%)
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1673
S +SP A+ P P T P S P+ P+ +P P P
Sbjct: 26 SSCFSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPA----APPPDPEPPVP 81
Query: 1674 SPTSPSYS--PTSPTYSPTSPSYNPQ 1697
P P P +P P P PQ
Sbjct: 82 GPAGPPSPLAPPAPARKPPLPPPRPQ 107
Score = 30.0 bits (68), Expect = 4.3
Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 2/84 (2%)
Query: 1495 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1554
S +SP + P P T P S P+ P P P PA
Sbjct: 26 SSCFSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAG 85
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPT 1578
P+ +P +P+ P P P
Sbjct: 86 PPSPL--APPAPARKPPLPPPRPQ 107
Score = 30.0 bits (68), Expect = 4.4
Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT---SPAYSPTSPAYSPTSPS 1630
S S S +SP ++ P P T P S P P +P P P
Sbjct: 21 STSGFSSCFSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPV 80
Query: 1631 YSPTSPSYS--PTSPSYSPTSPSYSPT 1655
P P P +P+ P P P
Sbjct: 81 PGPAGPPSPLAPPAPARKPPLPPPRPQ 107
Score = 29.6 bits (67), Expect = 5.3
Identities = 21/87 (24%), Positives = 27/87 (31%)
Query: 1644 SYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP 1703
S S S +SP ++ P P T P S P+ P+ P +
Sbjct: 21 STSGFSSCFSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPV 80
Query: 1704 SLAYSPSSPRLSPASPYSPTSPNYSPT 1730
P SP PA P P P
Sbjct: 81 PGPAGPPSPLAPPAPARKPPLPPPRPQ 107
Score = 29.3 bits (66), Expect = 6.1
Identities = 21/85 (24%), Positives = 24/85 (28%), Gaps = 5/85 (5%)
Query: 1480 QFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT 1539
FSP P P P P P +P P P P P
Sbjct: 28 CFSPPESAHPDDPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGP- 86
Query: 1540 YSPSSPGYSPTSPAYSPTSPSYSPT 1564
PS +P +PA P P P
Sbjct: 87 --PSPL--APPAPARKPPLPPPRPQ 107
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 36.2 bits (83), Expect = 0.21
Identities = 37/137 (27%), Positives = 55/137 (40%), Gaps = 14/137 (10%)
Query: 1513 SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTS 1572
P+ G S S G + P + +P + G T+PA T S +P +P +
Sbjct: 372 RPSGGGASAPS-GSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATP-----A 425
Query: 1573 PSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY 1631
PS +P SP P +P +P S P +P P SP A + A S P+
Sbjct: 426 PSAAP-----SPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASA-SDAPPTL 479
Query: 1632 SPTSPSYSPTSPSYSPT 1648
S + + +PS T
Sbjct: 480 GDPSDT-AEHTPSGPRT 495
Score = 35.0 bits (80), Expect = 0.39
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 1506 SPSSPGYSPTSPGYSP-TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPT 1564
PS G S S + + G + T P P + + G +P+S A + +PS +P
Sbjct: 372 RPSGGGASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAP- 430
Query: 1565 SPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
SP P +P +P S P +P P SP P +P ++ PT
Sbjct: 431 ----SPRVPWDDAPPAPPRSGIPPRPAPRMPEASP-----VPGAPDSVASASDAPPTLGD 481
Query: 1624 YSPTSPSYSPTSP 1636
S T+ ++P+ P
Sbjct: 482 PSDTAE-HTPSGP 493
Score = 34.3 bits (78), Expect = 0.67
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 9/138 (6%)
Query: 1472 RLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTS- 1530
RL PV P GG A +P+ S P+S G + + G +P + G +P+S
Sbjct: 364 RLMPVE--SLRPS-GGGASAPSGSAAEGPASGGAATIPTPGTQGPQGTAPAA-GMTPSSA 419
Query: 1531 -PGYSPTSPTYSPSSP-GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1588
P S SP P +P +P S P +P P SP P + S S P+
Sbjct: 420 APATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASP-VPGAPDSVASASDAPPT 478
Query: 1589 YSPTSPSYSPTSPSYSPT 1606
S + + +PS T
Sbjct: 479 LGDPSDT-AEHTPSGPRT 495
Score = 32.3 bits (73), Expect = 2.7
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 1723 TSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPG 1782
T+P T SS +P +P+ S + SP P++ P S P+ +P + PG
Sbjct: 408 TAPAAGMTPSSAAPATPAPSAAP---SPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPG 464
Query: 1783 YSPSSTSQY--TPQTNRDDSTT 1802
+P S + P T D S T
Sbjct: 465 -APDSVASASDAPPTLGDPSDT 485
Score = 32.3 bits (73), Expect = 3.0
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 15/128 (11%)
Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNP 1696
S P+ S S S + P+ + +P + G T+P+ T + +P +P+
Sbjct: 370 SLRPSGGGASAPSGSAAE-GPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPA--- 425
Query: 1697 QSAKYSPSLAY---------SPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPT 1747
SA SP + + S PR +P P + P + +S S P+ S T
Sbjct: 426 PSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDT 485
Query: 1748 --YSPSSP 1753
++PS P
Sbjct: 486 AEHTPSGP 493
Score = 32.0 bits (72), Expect = 3.3
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 14/132 (10%)
Query: 1567 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP 1626
S P+ S S S + P+ + +P + T+PA T + +P +PA
Sbjct: 370 SLRPSGGGASAPSGSAAE-GPASGGAATIPTPGTQGPQGTAPAAGMTPSSAAPATPA--- 425
Query: 1627 TSPSYSPTSPSY----SPTSPSYSPTSPSYSPTSPSYSPTS--PAYSPTSPGYSPTSPSY 1680
PS +P SP +P +P S P +P P SP P ++ PT
Sbjct: 426 --PSAAP-SPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDP 482
Query: 1681 SPTSPTYSPTSP 1692
S T+ ++P+ P
Sbjct: 483 SDTAE-HTPSGP 493
>gnl|CDD|218108 pfam04487, CITED, CITED. CITED, CBP/p300-interacting transactivator
with ED-rich tail, are characterized by a conserved
32-amino acid sequence at the C-terminus. CITED proteins
do not bind DNA directly and are thought to function as
transcriptional co-activators.
Length = 206
Score = 34.9 bits (80), Expect = 0.21
Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 10/108 (9%)
Query: 1439 GLEFGMTPARSPVSGT---PYHDGMMSPGYLFSPNLRLSPVTDAQFSPYVGGMAFSPTSS 1495
G++ P RS +SG + M +F+P+ + P + M ++
Sbjct: 52 GMDASGRP-RSAMSGPMGGGHPHQSMPAYMMFNPSSKPQPFMLVPGPQLMASMQLQKLNT 110
Query: 1496 PGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPS 1543
G++ + G+ P G PG +P P+
Sbjct: 111 Q-----YQGHAGAPAGH-PGGGGPQQFRPGAGQPPGMQHMPAPALPPN 152
>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein.
Length = 582
Score = 36.0 bits (83), Expect = 0.23
Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 4/92 (4%)
Query: 1511 GYSPTSPGYS-PTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYS 1569
G PG P P P P S + + S+PG +++P P SP PS
Sbjct: 177 GRGGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAP 236
Query: 1570 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1601
P S P P +P P P P P
Sbjct: 237 PASIPAPPIPPVIQYVAP---PPVPPPQPIIP 265
Score = 35.3 bits (81), Expect = 0.36
Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1649
P PS P P S + + ++P +++P P SP PS P S P
Sbjct: 187 QPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAPPIP 246
Query: 1650 PSYSPTSPSYSPTSPAYSPTSP--------GYSPTSP 1678
P +P P P P P G +P +P
Sbjct: 247 PVIQYVAP---PPVPPPQPIIPIQHIRAVTGETPANP 280
Score = 34.5 bits (79), Expect = 0.63
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 4/92 (4%)
Query: 1497 GYSPSSPGYS-PSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYS 1555
G + PG P P P P S + + ++PG +++P PG SP P
Sbjct: 177 GRGGNIPGAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQP--- 233
Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1587
P+ P P P P P P
Sbjct: 234 SAPPASIPAPPIPPVIQYVAPPPVPPPQPIIP 265
Score = 34.5 bits (79), Expect = 0.66
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 3/82 (3%)
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
P PS P P S + + ++P +++P P SP PS P S P
Sbjct: 187 QPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAPPIP 246
Query: 1643 PSYSPTSPSYSPTSPSYSPTSP 1664
P +P P P P P
Sbjct: 247 PVIQYVAP---PPVPPPQPIIP 265
Score = 34.1 bits (78), Expect = 0.72
Identities = 26/95 (27%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 1542 PSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1601
+ PG A P PS P P S + + ++P S++P P SP P
Sbjct: 180 GNIPG------AIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQP 233
Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
S P S P P +P P P P P
Sbjct: 234 SAPPASIPAPPIPPVIQYVAP---PPVPPPQPIIP 265
Score = 34.1 bits (78), Expect = 0.88
Identities = 27/92 (29%), Positives = 32/92 (34%), Gaps = 5/92 (5%)
Query: 1531 PGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1590
G P + P S P S +PS S T P S++P P SP PS
Sbjct: 179 GGNIPGAIQPPPPSS-LPGLPPGSSSLAPSASST-PGNRLPRVSFNPFLPGPSPAQPSAP 236
Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
P S P P +P P P P P
Sbjct: 237 PASIPAPPIPPVIQYVAP---PPVPPPQPIIP 265
Score = 31.8 bits (72), Expect = 4.4
Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 1609 AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
A P P+ P P S + + ++P S++P P SP PS P S P
Sbjct: 185 AIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAPP 244
Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSP 1692
P +P P P P P
Sbjct: 245 IPPVIQYVAP---PPVPPPQPIIP 265
Score = 31.4 bits (71), Expect = 4.8
Identities = 18/65 (27%), Positives = 25/65 (38%)
Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
P PS P P S + + ++P +++P PG SP PS P S P
Sbjct: 187 QPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAPPIP 246
Query: 1692 PSYNP 1696
P
Sbjct: 247 PVIQY 251
Score = 31.4 bits (71), Expect = 4.9
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 1496 PGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYS 1555
P P P S S + ++PG ++P PG SP P+ P+S P P
Sbjct: 191 PSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAPPIPPVIQ 250
Query: 1556 PTSPSYSPTSPSYSPTSP 1573
+P P P P P
Sbjct: 251 YVAP---PPVPPPQPIIP 265
Score = 31.0 bits (70), Expect = 6.5
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 1485 VGGMAFSPTSSPGYSPSSPGYSP---SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYS 1541
P+S PG P S +P S+PG ++P PG SP P P S
Sbjct: 184 GAIQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAP 243
Query: 1542 PSSPGYSPTSPAYSPTSPSYSPTSP 1566
P P +P P P P P
Sbjct: 244 PIPPVIQYVAP---PPVPPPQPIIP 265
Score = 30.7 bits (69), Expect = 8.2
Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 2/84 (2%)
Query: 1672 GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS 1731
P S P S +PS + P ++++P P SPA P +P P P
Sbjct: 186 IQPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAP--PASIPAP 243
Query: 1732 SSYSPTSPSYSPSSPTYSPSSPYN 1755
P P P P
Sbjct: 244 PIPPVIQYVAPPPVPPPQPIIPIQ 267
>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824). This is a
repeating domain found in fungal proteins. It is
proline-rich, and the function is not known.
Length = 135
Score = 34.1 bits (78), Expect = 0.24
Identities = 29/96 (30%), Positives = 33/96 (34%), Gaps = 13/96 (13%)
Query: 1707 YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPS 1766
P P P SP + P Y P S+ + P P S P P YN DY P
Sbjct: 51 EEPYDPTPYPPSP-PVSDPRYYPNSNYFPP--PPGSTPVPPPGPQPGYN----PADYPPP 103
Query: 1767 SPQYSPSAGYS-PSAPGYSPSSTSQYTPQTNRDDST 1801
P Y P PG P Y P+ R D
Sbjct: 104 PGAVPPPQNYPYPPGPGQDP-----YAPRPRRADEN 134
Score = 32.2 bits (73), Expect = 0.83
Identities = 24/90 (26%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1593
+ + P P P SP + P Y P S +Y P P +P P P Y+P
Sbjct: 45 AYSDSYEEPYDPTPYPPSP--PVSDPRYYPNS-NYFPPPPGSTPVPPP--GPQPGYNP-- 97
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
Y P + P P P P +P
Sbjct: 98 ADYPPPPGAVPPPQNYPYPPGPGQDPYAPR 127
Score = 31.8 bits (72), Expect = 1.5
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 7/90 (7%)
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1586
+ + P PT P SP + P Y P S +Y P P +P P P Y+P
Sbjct: 45 AYSDSYEEPYDPTPYPPSP--PVSDPRYYPNS-NYFPPPPGSTPVPPP--GPQPGYNP-- 97
Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPA 1616
Y P + P P P P +P
Sbjct: 98 ADYPPPPGAVPPPQNYPYPPGPGQDPYAPR 127
Score = 31.0 bits (70), Expect = 2.6
Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1663
+ + P P P SP + P Y P S +Y P P +P P P Y+P
Sbjct: 45 AYSDSYEEPYDPTPYPPSP--PVSDPRYYPNS-NYFPPPPGSTPVPPP--GPQPGYNP-- 97
Query: 1664 PAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAK 1700
A P PG P +Y P Y P+ +
Sbjct: 98 -ADYPPPPGAVPPPQNYPYPPG---PGQDPYAPRPRR 130
Score = 29.9 bits (67), Expect = 5.5
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 1562 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT--SPAYSP 1619
+ + P P+ P SP + P Y P S +Y P P +P P +PA P
Sbjct: 45 AYSDSYEEPYDPTPYPPSPP--VSDPRYYPNS-NYFPPPPGSTPVPPPGPQPGYNPADYP 101
Query: 1620 TSPAYSPTSPSYS-PTSPSYSPTSP 1643
P P +Y P P P +P
Sbjct: 102 PPPGAVPPPQNYPYPPGPGQDPYAP 126
Score = 29.5 bits (66), Expect = 7.9
Identities = 25/98 (25%), Positives = 32/98 (32%), Gaps = 16/98 (16%)
Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQS 1698
+ + P P+ P SP + P Y P S Y P P +P P P YNP
Sbjct: 45 AYSDSYEEPYDPTPYPPSPP--VSDPRYYPNS-NYFPPPPGSTPVPP--PGPQPGYNPA- 98
Query: 1699 AKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSP 1736
Y P + P Y P Y+P
Sbjct: 99 -------DYPPPPGAVPPPQNYPYPPG---PGQDPYAP 126
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 35.4 bits (82), Expect = 0.27
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 5/107 (4%)
Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPT 1747
+ + ++A+ SP Y P P P P + P P+ P
Sbjct: 73 HAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV--- 129
Query: 1748 YSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQ 1794
Y P P SPQ +P+ SAP + + P
Sbjct: 130 --QQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPV 174
>gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional.
Length = 234
Score = 34.9 bits (79), Expect = 0.29
Identities = 32/157 (20%), Positives = 70/157 (44%), Gaps = 5/157 (3%)
Query: 1581 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
S ++ S + + + T+PS S + P+ + ++ + ++P + S + T+ + +
Sbjct: 26 SSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVTSTG 85
Query: 1641 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAK 1700
T+ + PT+ + S + + T+ + T G ++ S + T +S +
Sbjct: 86 TTVTPVPTTSNASTINVTTKVTAQNITATEAGTGTSTGVTS--NVTTRSSSTTSATTRIT 143
Query: 1701 YSPSLAYSPSSPRLSPASPYS---PTSPNYSPTSSSY 1734
+ +LA + SS S A+ + PT P+ S SY
Sbjct: 144 NATTLAPTLSSKGTSNATKTTAELPTVPDERQPSLSY 180
Score = 34.5 bits (78), Expect = 0.35
Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 7/161 (4%)
Query: 1536 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1595
TS S +S G + + T+PS S + PS + ++ + ++P + S + T+ +
Sbjct: 25 TSSGSSTASAG--NVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVT 82
Query: 1596 YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1655
+ T+ + PT+ S + T+ + T ++ TS + +S + S T
Sbjct: 83 STGTTVTPVPTTSNASTINVTTKVTAQNITATEAGTGTSTGV---TSNVTTRSSSTTSAT 139
Query: 1656 SPSYSPTSPAYSPTSPGYSPTSPSYS--PTSPTYSPTSPSY 1694
+ + T+ A + +S G S + + + PT P S SY
Sbjct: 140 TRITNATTLAPTLSSKGTSNATKTTAELPTVPDERQPSLSY 180
Score = 32.6 bits (73), Expect = 1.5
Identities = 29/154 (18%), Positives = 61/154 (39%), Gaps = 2/154 (1%)
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTS 1614
++ S + + + T+PS S + PS + ++ + ++P + S + T+ + T+
Sbjct: 28 GSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVTSTGTT 87
Query: 1615 -PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1673
TS A + + + + + + T + + T+ S S TS T+
Sbjct: 88 VTPVPTTSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRSSSTTSATTRITNATT 147
Query: 1674 SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY 1707
+ S TS T+ + PSL+Y
Sbjct: 148 LAPTLSSKGTSNATKTTAELPTVPDER-QPSLSY 180
Score = 31.8 bits (71), Expect = 3.0
Identities = 36/160 (22%), Positives = 68/160 (42%), Gaps = 5/160 (3%)
Query: 1529 TSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1588
TS G S S + + T+P+ S + PS + ++ + ++P + S + T+ +
Sbjct: 25 TSSGSSTASAGNVTGT--TAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVT 82
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP-TSPSYSPTSPSYSP 1647
+ T+ + PT+ + S + T+ + T ++ S T+ S S TS +
Sbjct: 83 STGTTVTPVPTTSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRSSSTTSATTRI 142
Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTY 1687
T+ + + S TS A T+ PT P S +Y
Sbjct: 143 TNATTLAPTLSSKGTSNATKTTAE--LPTVPDERQPSLSY 180
Score = 31.4 bits (70), Expect = 3.4
Identities = 32/161 (19%), Positives = 69/161 (42%), Gaps = 7/161 (4%)
Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPA 1553
+S G S +S G + + SP S + P + ++ + ++P + + + T+
Sbjct: 25 TSSGSSTASAGNVTGTTAVTTPSP--SASGPSTNQSTTLTTTSAPITTTAILSTNTTTVT 82
Query: 1554 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
+ T+ + PT+ + S + + T+ + + T ++ S + S T+ A T
Sbjct: 83 STGTTVTPVPTTSNASTINVTTKVTAQNITATEAGTGTSTGVTSNVTTRSSSTTSA---T 139
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYS--PTSPSYSPTSPSY 1652
+ + T+ A + +S S + + + PT P S SY
Sbjct: 140 TRITNATTLAPTLSSKGTSNATKTTAELPTVPDERQPSLSY 180
>gnl|CDD|215448 PLN02834, PLN02834, 3-dehydroquinate synthase.
Length = 433
Score = 35.1 bits (81), Expect = 0.31
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP 1619
S S + + P+ SPS + + S S + P +
Sbjct: 3 SSSADNSESNT--PTVLSRSPSDAFFDQNSSIESSKEGDLTEVIHEKCPVSGANKSEVTK 60
Query: 1620 TSPAYSPTSPSYSPTSPSY 1638
T+ A T SY
Sbjct: 61 TASATVTTVVKVDLGDRSY 79
Score = 34.4 bits (79), Expect = 0.58
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 1567 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP 1626
S S + + P+ SPS + + S S + P +
Sbjct: 3 SSSADNSESNT--PTVLSRSPSDAFFDQNSSIESSKEGDLTEVIHEKCPVSGANKSEVTK 60
Query: 1627 TSPSYSPTSPSYSPTSPSY 1645
T+ + T SY
Sbjct: 61 TASATVTTVVKVDLGDRSY 79
Score = 34.0 bits (78), Expect = 0.76
Identities = 11/70 (15%), Positives = 19/70 (27%)
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
+P+ SPS + + S S + P + T+ + T
Sbjct: 10 ESNTPTVLSRSPSDAFFDQNSSIESSKEGDLTEVIHEKCPVSGANKSEVTKTASATVTTV 69
Query: 1685 PTYSPTSPSY 1694
SY
Sbjct: 70 VKVDLGDRSY 79
Score = 33.2 bits (76), Expect = 1.2
Identities = 10/59 (16%), Positives = 17/59 (28%)
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
+P+ SPS + + S S + P + T+ A T
Sbjct: 10 ESNTPTVLSRSPSDAFFDQNSSIESSKEGDLTEVIHEKCPVSGANKSEVTKTASATVTT 68
Score = 32.8 bits (75), Expect = 1.7
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 2/79 (2%)
Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP 1633
S S + + P+ SPS + + S S + P +
Sbjct: 3 SSSADNSESNT--PTVLSRSPSDAFFDQNSSIESSKEGDLTEVIHEKCPVSGANKSEVTK 60
Query: 1634 TSPSYSPTSPSYSPTSPSY 1652
T+ + T SY
Sbjct: 61 TASATVTTVVKVDLGDRSY 79
Score = 32.8 bits (75), Expect = 1.9
Identities = 9/61 (14%), Positives = 17/61 (27%)
Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSP 1689
+ +P+ SPS + + S S + P + T+
Sbjct: 8 NSESNTPTVLSRSPSDAFFDQNSSIESSKEGDLTEVIHEKCPVSGANKSEVTKTASATVT 67
Query: 1690 T 1690
T
Sbjct: 68 T 68
Score = 32.0 bits (73), Expect = 3.1
Identities = 11/66 (16%), Positives = 19/66 (28%)
Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
S S+ +P SPS + + S S + P + T+
Sbjct: 3 SSSADNSESNTPTVLSRSPSDAFFDQNSSIESSKEGDLTEVIHEKCPVSGANKSEVTKTA 62
Query: 1601 PSYSPT 1606
+ T
Sbjct: 63 SATVTT 68
Score = 31.7 bits (72), Expect = 3.9
Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 2/68 (2%)
Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
S S + +P SP+ + + S S + P +
Sbjct: 3 SSSADNS--ESNTPTVLSRSPSDAFFDQNSSIESSKEGDLTEVIHEKCPVSGANKSEVTK 60
Query: 1662 TSPAYSPT 1669
T+ A T
Sbjct: 61 TASATVTT 68
Score = 30.9 bits (70), Expect = 6.2
Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 2/79 (2%)
Query: 1581 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1640
S S + + P+ SPS + S S + P +
Sbjct: 3 SSSADNSESNT--PTVLSRSPSDAFFDQNSSIESSKEGDLTEVIHEKCPVSGANKSEVTK 60
Query: 1641 TSPSYSPTSPSYSPTSPSY 1659
T+ + T SY
Sbjct: 61 TASATVTTVVKVDLGDRSY 79
Score = 30.9 bits (70), Expect = 7.7
Identities = 9/59 (15%), Positives = 15/59 (25%)
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
+P SPS + + S S + P + T+ T
Sbjct: 10 ESNTPTVLSRSPSDAFFDQNSSIESSKEGDLTEVIHEKCPVSGANKSEVTKTASATVTT 68
>gnl|CDD|191251 pfam05283, MGC-24, Multi-glycosylated core protein 24 (MGC-24). This
family consists of several MGC-24 (or Cd164 antigen)
proteins from eukaryotic organisms. MGC-24/CD164 is a
sialomucin expressed in many normal and cancerous
tissues. In humans, soluble and transmembrane forms of
MGC-24 are produced by alternative splicing.
Length = 187
Score = 34.2 bits (78), Expect = 0.32
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 8/82 (9%)
Query: 1563 PTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT 1620
P P Y S S + S S + T+P PT+ + PT TS + +
Sbjct: 82 PEEPGYCSSQAEVVKSGCQIYNTTDSCSVATTTPV--PTNSTAKPTITPSPTTSHHHVTS 139
Query: 1621 SPAYSPTSPSYSPTS-PSYSPT 1641
P T+ + +PTS P T
Sbjct: 140 EPK---TNTTVTPTSQPDRKST 158
Score = 34.2 bits (78), Expect = 0.32
Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 1556 PTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT 1613
P P Y S S + S S + T+P PT+ + PT TS + +
Sbjct: 82 PEEPGYCSSQAEVVKSGCQIYNTTDSCSVATTTPV--PTNSTAKPTITPSPTTSHHHVTS 139
Query: 1614 SPAYSPT-SPAYSPTSPSYSPT 1634
P + T +P + P T
Sbjct: 140 EPKTNTTVTP---TSQPDRKST 158
Score = 33.8 bits (77), Expect = 0.41
Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 13/93 (13%)
Query: 1577 PTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT 1634
P P Y S S + S S + T+P PT+ PT TS + +
Sbjct: 82 PEEPGYCSSQAEVVKSGCQIYNTTDSCSVATTTPV--PTNSTAKPTITPSPTTSHHHVTS 139
Query: 1635 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1667
P T+ + +PTS P T A S
Sbjct: 140 EPK---TNTTVTPTSQ------PDRKSTFDAAS 163
Score = 33.8 bits (77), Expect = 0.43
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 1542 PSSPGY--SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1599
P PGY S S + S S + T+P PT+ + PT TS + +
Sbjct: 82 PEEPGYCSSQAEVVKSGCQIYNTTDSCSVATTTPV--PTNSTAKPTITPSPTTSHHHVTS 139
Query: 1600 SPSYSPT-SPAYSPTSPAYSPTSPAYS 1625
P + T +P + P T A S
Sbjct: 140 EPKTNTTVTP---TSQPDRKSTFDAAS 163
Score = 33.1 bits (75), Expect = 0.73
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTS 1684
S + S S + T+P PT+ + PT TS + + P T+ + +PTS
Sbjct: 97 SGCQIYNTTDSCSVATTTPV--PTNSTAKPTITPSPTTSHHHVTSEPK---TNTTVTPTS 151
Query: 1685 P 1685
Sbjct: 152 Q 152
Score = 33.1 bits (75), Expect = 0.76
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 8/82 (9%)
Query: 1570 PTSPSY--SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT 1627
P P Y S S + S S + T+P PT+ PT TS + +
Sbjct: 82 PEEPGYCSSQAEVVKSGCQIYNTTDSCSVATTTPV--PTNSTAKPTITPSPTTSHHHVTS 139
Query: 1628 SPSYSPTSPSYSPTS-PSYSPT 1648
P T+ + +PTS P T
Sbjct: 140 EPK---TNTTVTPTSQPDRKST 158
Score = 32.3 bits (73), Expect = 1.3
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
S + S S + T+P PT+ + PT TS + + P T+ T +PTS
Sbjct: 97 SGCQIYNTTDSCSVATTTPV--PTNSTAKPTITPSPTTSHHHVTSEPK---TNTTVTPTS 151
Query: 1692 P 1692
Sbjct: 152 Q 152
Score = 32.3 bits (73), Expect = 1.6
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 1528 PTSPGY--SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
P PGY S S + S + + T+P PT+ + PT TS + +
Sbjct: 82 PEEPGYCSSQAEVVKSGCQIYNTTDSCSVATTTPV--PTNSTAKPTITPSPTTSHHHVTS 139
Query: 1586 SPSYSPTSPSYSPTS-PSYSPTSPAYS 1611
P T+ + +PTS P T A S
Sbjct: 140 EPK---TNTTVTPTSQPDRKSTFDAAS 163
Score = 31.9 bits (72), Expect = 2.0
Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 1535 PTSPTY--SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1592
P P Y S + S + S S + T+P PT+ + PT TS + +
Sbjct: 82 PEEPGYCSSQAEVVKSGCQIYNTTDSCSVATTTPV--PTNSTAKPTITPSPTTSHHHVTS 139
Query: 1593 SPSYSPTSPSYSPTS-PAYSPTSPAYS 1618
P T+ + +PTS P T A S
Sbjct: 140 EPK---TNTTVTPTSQPDRKSTFDAAS 163
Score = 30.4 bits (68), Expect = 6.2
Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 13/88 (14%)
Query: 1598 PTSPSY--SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1655
P P Y S S + S + + T+P PT+ + PT TS + +
Sbjct: 82 PEEPGYCSSQAEVVKSGCQIYNTTDSCSVATTTPV--PTNSTAKPTITPSPTTSHHHVTS 139
Query: 1656 SPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
P T+ +PTS P T
Sbjct: 140 EPK---TNTTVTPTSQ------PDRKST 158
>gnl|CDD|206007 pfam13836, DUF4195, Domain of unknown function (DUF4195). This
family is found at the N-terminus of metazoan proteins
that carry PHD-like zinc-finger domains. The function is
not known.
Length = 184
Score = 34.2 bits (78), Expect = 0.35
Identities = 39/162 (24%), Positives = 59/162 (36%), Gaps = 17/162 (10%)
Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP-SYSPTSPSYSPTSPSYSPTSPSYSPT 1599
S S P S +P+S S + S +P + PTS Y S + P++ P
Sbjct: 7 SSSKPAISNILNRVNPSSSSKGLKNGSLNPGITAIFKPTSQHYRNPSSNPVAALPNFHPE 66
Query: 1600 SPSYSPTSPAYSPTSPAYSPTSP-------------AYSPTSPSYS--PTSPSYSPTSPS 1644
S S + + P ++ SP + T P PT S
Sbjct: 67 SKSSDSSVIVQPFSKPDFTKNSPQVDSNNSSELLFDSTQDTLPHSQGGPTLSRAGMDETS 126
Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
+ PS S + S +P P S + G +P+S S SP+
Sbjct: 127 FLLKHPSTSKVN-SVNPKKPKTSESVSGINPSSSLSSQKSPS 167
Score = 31.5 bits (71), Expect = 2.7
Identities = 33/140 (23%), Positives = 49/140 (35%), Gaps = 7/140 (5%)
Query: 1500 PSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSP 1559
+PG + + PTS Y S P + P S + S + P ++ SP
Sbjct: 33 SLNPGITAI---FKPTSQHYRNPSSNPVAALPNFHPESKSSDSSVIVQPFSKPDFTKNSP 89
Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1617
+ S S T P PT S+ PS S + + +P P
Sbjct: 90 QVDSNNSSEL-LFDSTQDTLPHSQGGPTLSRAGMDETSFLLKHPSTSKVN-SVNPKKPKT 147
Query: 1618 SPTSPAYSPTSPSYSPTSPS 1637
S + +P+S S SPS
Sbjct: 148 SESVSGINPSSSLSSQKSPS 167
Score = 31.2 bits (70), Expect = 3.1
Identities = 37/180 (20%), Positives = 65/180 (36%), Gaps = 8/180 (4%)
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
S + P+ S +P+S S + + +P A + PTS Y S +
Sbjct: 7 SSSKPAISNILNRVNPSSSSKGLKNGSLNPGITA------IFKPTSQHYRNPSSNPVAAL 60
Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYS 1702
P++ P S S + + P ++ SP + S T S + +
Sbjct: 61 PNFHPESKSSDSSVIVQPFSKPDFTKNSPQVDSNNSSELLFDSTQDTLPHSQGGPTLSRA 120
Query: 1703 --PSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGN 1760
++ P S + +P P S + S +P+S S SP+ + S + G N
Sbjct: 121 GMDETSFLLKHPSTSKVNSVNPKKPKTSESVSGINPSSSLSSQKSPSVTSSQVVLSKGTN 180
Score = 30.4 bits (68), Expect = 6.9
Identities = 35/145 (24%), Positives = 51/145 (35%), Gaps = 13/145 (8%)
Query: 1489 AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSP-SSPGY 1547
+ +P + + P+S Y S P + P S S +S P S P +
Sbjct: 33 SLNPGITAIFKPTSQHYRNPSSNPVAALPNFHPESKS--------SDSSVIVQPFSKPDF 84
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYS--PTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
+ SP + S S T P PT S+ PS S + S +P
Sbjct: 85 TKNSPQVDSNNSSEL-LFDSTQDTLPHSQGGPTLSRAGMDETSFLLKHPSTSKVN-SVNP 142
Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPS 1630
P S + +P+S S SPS
Sbjct: 143 KKPKTSESVSGINPSSSLSSQKSPS 167
>gnl|CDD|148271 pfam06566, Chon_Sulph_att, Chondroitin sulphate attachment domain.
This family represents the chondroitin sulphate
attachment domain of vertebrate neural transmembrane
proteoglycans that contain EGF modules. Evidence has been
accumulated to support the idea that neural proteoglycans
are involved in various cellular events including
mitogenesis, differentiation, axonal outgrowth and
synaptogenesis. This domain contains several potential
sites of chondroitin sulphate attachment, as well as
potential sites of N-linked glycosylation.
Length = 253
Score = 34.6 bits (79), Expect = 0.35
Identities = 26/130 (20%), Positives = 39/130 (30%), Gaps = 11/130 (8%)
Query: 1496 PGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYS 1555
PG P G S+ + +SPG + + + +P +
Sbjct: 57 PGVGPEE-GLEASAAVTP--TAWLEASSPGLGGVTAEAGS-GDSQGLPATLPTPDEALGN 112
Query: 1556 PTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTS-----PSYSPTSPSYSPTSPA 1609
P + + PS P PS P P SP +P + PTSPA
Sbjct: 113 SNPSLALP-EATEASNPPSPGPGDKPSLLPELPKESPVEVWLNLGGSTPDPAAPEPTSPA 171
Query: 1610 YSPTSPAYSP 1619
P +
Sbjct: 172 QGTLEPQPAS 181
>gnl|CDD|226609 COG4124, ManB, Beta-mannanase [Carbohydrate transport and
metabolism].
Length = 355
Score = 34.8 bits (80), Expect = 0.38
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 7/103 (6%)
Query: 1719 PYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPS--SPYNAGGGNPDYSPSSPQYS---PS 1773
P P YS S PS + + S S G ++ ++ +
Sbjct: 51 PDIMNDPWYSGAVGIVSFDVPSLTENDRDDSHKFGSYDPIGDFPAPHNVNNEELFLPVED 110
Query: 1774 AGY--SPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSS 1814
SA GY+P + S + + + T + SS
Sbjct: 111 VDLDTLISADGYNPERGRSLNKISIEPWSWSANWRITDIEDSS 153
>gnl|CDD|145361 pfam02161, Prog_receptor, Progesterone receptor.
Length = 456
Score = 35.0 bits (80), Expect = 0.39
Identities = 38/175 (21%), Positives = 59/175 (33%), Gaps = 17/175 (9%)
Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP----TSPAYSPTSPGYSPTSP--SYSPT 1683
S S + S S P +P+ PG S + P
Sbjct: 68 SLSDVERAEPEVEASRGRGEGSSRPPEKDSGLLDSVLDTLLAPSGPG-EHLSSWCLFGPE 126
Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYS---PTSSSYSPTSPS 1740
P SP + K S + S R +P +P+ P + + P + S
Sbjct: 127 LPEVPRVSPLMSRPEGKAGDSSPRALSPSRPTPGAPHWPGAEVKASSQPATLGVEEESGW 186
Query: 1741 YSPSSP-TYSPSSPY-----NAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTS 1789
+P P P +GGG + S+P+ S + +P APG SP +T+
Sbjct: 187 AAPGLPGPLEKGKPRPLAGPASGGGAAA-AASAPRVSLTEQDAPVAPGRSPLATT 240
>gnl|CDD|227416 COG5084, YTH1, Cleavage and polyadenylation specificity factor (CPSF)
Clipper subunit and related makorin family Zn-finger
proteins [General function prediction only].
Length = 285
Score = 34.5 bits (79), Expect = 0.41
Identities = 37/141 (26%), Positives = 51/141 (36%), Gaps = 8/141 (5%)
Query: 1489 AFSPTSSPGYSPSSPGYSP--SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPG 1546
FS Y S P S S G S P S ++ YS ++ G
Sbjct: 118 GFSCEFLHEYDLRSSQGPPCRSFSLKGSCSSGPSCGYSHIDPDS--FAGNCDQYSGATYG 175
Query: 1547 YSP--TSPAYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPS 1602
+ P S +S T +SP + T P P +PS S +S Y TS S S S +
Sbjct: 176 FCPLGASCKFSHTLKRVSYGSSPCGNYTPPFSPPGTPSESVSSWGYGKGTSCSLSHPSLN 235
Query: 1603 YSPTSPAYSPTSPAYSPTSPA 1623
P +P+ T+P
Sbjct: 236 IDIQQPQTAPSRKDSGGTNPI 256
Score = 31.4 bits (71), Expect = 4.2
Identities = 52/258 (20%), Positives = 76/258 (29%), Gaps = 25/258 (9%)
Query: 1515 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1574
S S S +S + S SSP + + T+ ++ P + +
Sbjct: 23 HSNYTSLNDGLQSVSSKYMGAKQISPSLSSPTFKNKANLMQNTNDNFVPGNTVACISRNF 82
Query: 1575 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA--YSPTSPAYSPTSPAYSPTSPSYS 1632
S S + +P S + Y S P S+S
Sbjct: 83 NSIRGSRLSTPNNHVNPVLSSSVVCKFFLRGLCKSGFSCEFLHEYDLRSSQGPPCR-SFS 141
Query: 1633 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSP--TSPSYSPT-SPTYSP 1689
S S YS P S++ YS + G+ P S +S T
Sbjct: 142 LKGSCSSGPSCGYSHIDPD------SFAGNCDQYSGATYGFCPLGASCKFSHTLKRVSYG 195
Query: 1690 TSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYS 1749
+SP N P SP +P+ S TS S S S + P +
Sbjct: 196 SSPCGNYTP----------PFSPPGTPSESVSSWGYG-KGTSCSLSHPSLNIDIQQPQTA 244
Query: 1750 PSSPYNAGGGNPDYSPSS 1767
PS + GG SS
Sbjct: 245 PSRKDS--GGTNPIGASS 260
>gnl|CDD|221960 pfam13178, DUF4005, Protein of unknown function (DUF4005). This is a
C-terminal region of plant IQ-containing putative
calmodulin-binding proteins.
Length = 105
Score = 32.5 bits (74), Expect = 0.41
Identities = 25/108 (23%), Positives = 35/108 (32%), Gaps = 16/108 (14%)
Query: 1494 SSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGY-SPT-----------SPTYS 1541
++P SS S S +PT S SP+ P Y + T +P
Sbjct: 1 NTPRLLSSSSSKSSRSSPSNPTKSERDDNSSTSSPSLPNYMAATESAKAKVRSQSAPR-- 58
Query: 1542 PSSPGYSPTSPAYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1588
P S T S +S S +S S + + SPS
Sbjct: 59 -QRPETEERESGSSATKRLSLPVSSSSGGSSSSSPRTSGGKGALRSPS 105
Score = 31.0 bits (70), Expect = 1.4
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 12/105 (11%)
Query: 1537 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY-SPT--------SPSYSPTS- 1586
+P SS S S +PT S + SP+ P+Y + T S S +P
Sbjct: 2 TPRLLSSSSSKSSRSSPSNPTKSERDDNSSTSSPSLPNYMAATESAKAKVRSQS-APRQR 60
Query: 1587 PSYSPTSPSYSPTS-PSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
P S T S +S + +S + + + SPS
Sbjct: 61 PETEERESGSSATKRLSLPVSSSSGGSSSSSPRTSGGKGALRSPS 105
Score = 29.1 bits (65), Expect = 6.7
Identities = 23/104 (22%), Positives = 34/104 (32%), Gaps = 17/104 (16%)
Query: 1593 SPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY---------------SPTS-P 1636
+P +S S S S +PT S SP+ P+Y +P P
Sbjct: 2 TPRLLSSSSSKSSRSSPSNPTKSERDDNSSTSSPSLPNYMAATESAKAKVRSQSAPRQRP 61
Query: 1637 SYSPTSPSYSPTS-PSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
S T S +S S +S + + + SPS
Sbjct: 62 ETEERESGSSATKRLSLPVSSSSGGSSSSSPRTSGGKGALRSPS 105
Score = 28.7 bits (64), Expect = 9.7
Identities = 28/104 (26%), Positives = 41/104 (39%), Gaps = 20/104 (19%)
Query: 1710 SSPRLS--------PASPYSPTSPNYSPTSSSYSPTSPSY------------SPSSPTYS 1749
++PRL +SP +PT SS+ SP+ P+Y S S+P
Sbjct: 1 NTPRLLSSSSSKSSRSSPSNPTKSERDDNSSTSSPSLPNYMAATESAKAKVRSQSAPRQR 60
Query: 1750 PSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
P + G + S P S S G S S+P S + +P
Sbjct: 61 PETEERESGSSATKRLSLPVSSSSGGSSSSSPRTSGGKGALRSP 104
>gnl|CDD|218825 pfam05956, APC_basic, APC basic domain. This region of the APC
family of proteins is known as the basic domain. It
contains a high proportion of positively charged amino
acids and interacts with microtubules.
Length = 359
Score = 34.7 bits (79), Expect = 0.42
Identities = 64/305 (20%), Positives = 93/305 (30%), Gaps = 16/305 (5%)
Query: 1505 YSPS-SPGYSPTSPGYSPTSPGYSPTSPGYSPT---SPTYSPSSPGYSPTSPAYSPTSPS 1560
Y P + T+P P+ P SP+ + S P SP S
Sbjct: 10 YIPGPANRSQSTTPSKKGPPLKTQPSDPPKSPSPGQQRSRSLHRPAKPSELAELSPPPRS 69
Query: 1561 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPAYSP--TSPAY 1617
+P + S S S TS P + S S P S + P +SPA
Sbjct: 70 ATPPARLAKTPSSSSSQTSTPSQPLPRPLPRPTQSAGRNSILPGPGNSLSQVPRTSSPAR 129
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPAYSPTSPGYSPT 1676
+ + + S SP + P S + S P A PG +
Sbjct: 130 ALLASSGSQHKTQKSPVRIPFMQNPAKPPPLSKNASSRPRPEPGSRGRAGMNGGPGARGS 189
Query: 1677 SPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR-----LSPASPYSPTSPNYSPT- 1730
+ S S S + + SP + R LS A + +S SP
Sbjct: 190 RLELVRMASAKSSGSESDRSGFRRQLTFIKESPGTLRRRRSELSSAESLASSSQPASPRR 249
Query: 1731 SSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQ 1790
S P S P S+ + G P P+ P+ Y+ P P +
Sbjct: 250 SRPALPAVFLCSSRCPELRASTHSSVQAGGWRKLP--PRQGPAIEYNQRRPAARPDIAER 307
Query: 1791 YTPQT 1795
Y +T
Sbjct: 308 YGRRT 312
Score = 33.2 bits (75), Expect = 1.4
Identities = 64/310 (20%), Positives = 96/310 (30%), Gaps = 25/310 (8%)
Query: 1530 SPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1589
PG + S + +PS G + P S S P+ SP S
Sbjct: 11 IPGPANRSQSTTPSKKGPPLKTQPSDPPKSPSPGQQRSRSLHRPAKPSELAELSPPPRSA 70
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT-SPSYSP--TSPSYS 1646
+P + S S S TS P + + S P S S P +SP+ +
Sbjct: 71 TPPARLAKTPSSSSSQTSTPSQPLPRPLPRPTQSAGRNSILPGPGNSLSQVPRTSSPARA 130
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPS-- 1704
+ S S SP + P S + S + P P S +
Sbjct: 131 LLASSGSQHKTQKSPVRIPFMQNPAKPPPLSKNAS-SRPRPEPGSRGRAGMNGGPGARGS 189
Query: 1705 ------LAYSPSSPRLSPASPY--SPTSPNYSPT--------SSSYSPTSPSYSPSSPTY 1748
+A + SS S S + T SP SS + S P+SP
Sbjct: 190 RLELVRMASAKSSGSESDRSGFRRQLTFIKESPGTLRRRRSELSSAESLASSSQPASPRR 249
Query: 1749 S-PSSP--YNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDD 1805
S P+ P + P+ S+ + G+ P P+ R D +
Sbjct: 250 SRPALPAVFLCSSRCPELRASTHSSVQAGGWRKLPPRQGPAIEYNQRRPAARPDIAERYG 309
Query: 1806 KNTKGDKSSR 1815
+ T + SR
Sbjct: 310 RRTSSESPSR 319
>gnl|CDD|177577 PHA03292, PHA03292, envelope glycoprotein I; Provisional.
Length = 413
Score = 34.5 bits (79), Expect = 0.47
Identities = 27/151 (17%), Positives = 47/151 (31%), Gaps = 6/151 (3%)
Query: 1506 SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTS 1565
SP+ P PT+ P + + +P Y T + S S + A + T +PT
Sbjct: 169 SPTVPDPEPTTARPEPAAGYVATPTPRYLNAVTTSTYSRSMSSQPAGAATATP---TPTL 225
Query: 1566 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYS 1625
+ T + T + + + PT + + + S
Sbjct: 226 DTGLTTVAPPNETVVTGETALLCHWFQPSTRVPTLYLHLLGTTGNLTEDVLLTEDSEILR 285
Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1656
P S + SP + + S SP
Sbjct: 286 TPPPDPSSSR---SPGAGDDFKQTNSTSPKR 313
Score = 33.4 bits (76), Expect = 1.2
Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 7/148 (4%)
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT-SPSYSPTSPSYSPT---SPSYSPTSPSY 1582
SPT P PT+ P++ + +P Y + S S S P + + +PT +
Sbjct: 169 SPTVPDPEPTTARPEPAAGYVATPTPRYLNAVTTSTYSRSMSSQPAGAATATPTPTLDTG 228
Query: 1583 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1642
T + T + + PT + + + S
Sbjct: 229 LTTVAPPNETVVTGETALLCHWFQPSTRVPTLYLHLLGTTGNLTEDVLLTEDSEILRTPP 288
Query: 1643 PSYSPTSPSYSPTSPSYSPTSPAYSPTS 1670
P S + SP + + + SP
Sbjct: 289 PDPSSSR---SPGAGDDFKQTNSTSPKR 313
>gnl|CDD|217814 pfam03957, Jun, Jun-like transcription factor.
Length = 236
Score = 34.2 bits (78), Expect = 0.52
Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
Query: 1545 PGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1604
S + A P+ + + + +P P Y+ S +++P + + + + +
Sbjct: 137 SANSAAAAASGAGGPTAAAMAGPGGLFAGGLAPEPPVYANLS-TFNPGATATAYGAMTEG 195
Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1650
+P + +P + P P P +PS+ + P
Sbjct: 196 FAAPPHPHANPPGAVGPPRLQALK-----DEPQTVPEAPSFGESPP 236
Score = 33.5 bits (76), Expect = 0.92
Identities = 15/101 (14%), Positives = 39/101 (38%), Gaps = 3/101 (2%)
Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1646
+ S + + P+ + + + +P P Y+ S +++P + + + + +
Sbjct: 137 SANSAAAAASGAGGPTAAAMAGPGGLFAGGLAPEPPVYANLS-TFNPGATATAYGAMTEG 195
Query: 1647 PTSPSYSPTSPSYSPTSPAYSP--TSPGYSPTSPSYSPTSP 1685
+P + +P + P P P +PS+ + P
Sbjct: 196 FAAPPHPHANPPGAVGPPRLQALKDEPQTVPEAPSFGESPP 236
Score = 33.1 bits (75), Expect = 0.96
Identities = 17/101 (16%), Positives = 37/101 (36%), Gaps = 3/101 (2%)
Query: 1503 PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYS 1562
S ++ P + + + G +P P Y+ S ++P + A + + +
Sbjct: 137 SANSAAAAASGAGGPTAAAMAGPGGLFAGGLAPEPPVYANLS-TFNPGATATAYGAMTEG 195
Query: 1563 PTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSP 1601
+P + +P + P P P +PS+ + P
Sbjct: 196 FAAPPHPHANPPGAVGPPRLQALKDEPQTVPEAPSFGESPP 236
Score = 32.7 bits (74), Expect = 1.3
Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 3/101 (2%)
Query: 1510 PGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYS 1569
S + P + + + +P P Y+ S ++P + + + + +
Sbjct: 137 SANSAAAAASGAGGPTAAAMAGPGGLFAGGLAPEPPVYANLS-TFNPGATATAYGAMTEG 195
Query: 1570 PTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSP 1608
+P + +P + P P P +PS+ + P
Sbjct: 196 FAAPPHPHANPPGAVGPPRLQALKDEPQTVPEAPSFGESPP 236
Score = 32.7 bits (74), Expect = 1.4
Identities = 19/102 (18%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 1474 SPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGY 1533
S + A + GG + + PG + +P P Y+ S ++P + + +
Sbjct: 137 SANSAAAAASGAGGPTAAAMAGPGGLFAGGL-APEPPVYANLS-TFNPGATATAYGAMTE 194
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSP--TSPSYSPTSPSYSPTSP 1573
+P + ++P + P P P +PS+ + P
Sbjct: 195 GFAAPPHPHANPPGAVGPPRLQALKDEPQTVPEAPSFGESPP 236
Score = 32.7 bits (74), Expect = 1.6
Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYS 1618
+ S + + P+ + + + +P P Y+ S +++P + A + +
Sbjct: 137 SANSAAAAASGAGGPTAAAMAGPGGLFAGGLAPEPPVYANLS-TFNPGATATAYGAMTEG 195
Query: 1619 PTSPAYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSP 1657
+P + +P + P P P +PS+ + P
Sbjct: 196 FAAPPHPHANPPGAVGPPRLQALKDEPQTVPEAPSFGESPP 236
Score = 32.7 bits (74), Expect = 1.6
Identities = 15/101 (14%), Positives = 37/101 (36%), Gaps = 3/101 (2%)
Query: 1538 PTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1597
S ++ P + + + +P P Y+ S +++P + + + + +
Sbjct: 137 SANSAAAAASGAGGPTAAAMAGPGGLFAGGLAPEPPVYANLS-TFNPGATATAYGAMTEG 195
Query: 1598 PTSPSYSPTSPAYSPTSPAYSP--TSPAYSPTSPSYSPTSP 1636
+P + +P + P P P +PS+ + P
Sbjct: 196 FAAPPHPHANPPGAVGPPRLQALKDEPQTVPEAPSFGESPP 236
Score = 32.3 bits (73), Expect = 2.1
Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 3/101 (2%)
Query: 1482 SPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYS 1541
S A S P + + + G +P P Y+ S ++P + + + T
Sbjct: 137 SANSAAAAASGAGGPTAAAMAGPGGLFAGGLAPEPPVYANLS-TFNPGATATAYGAMTEG 195
Query: 1542 PSSPGYSPTSPAYSPTSPSYSP--TSPSYSPTSPSYSPTSP 1580
++P + +P + P P P +PS+ + P
Sbjct: 196 FAAPPHPHANPPGAVGPPRLQALKDEPQTVPEAPSFGESPP 236
Score = 31.9 bits (72), Expect = 2.4
Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 3/101 (2%)
Query: 1566 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYS 1625
+ S + + P+ + + + +P P Y+ S ++P + A + +
Sbjct: 137 SANSAAAAASGAGGPTAAAMAGPGGLFAGGLAPEPPVYANLS-TFNPGATATAYGAMTEG 195
Query: 1626 PTSPSYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSP 1664
+P + +P + P P P +PS+ + P
Sbjct: 196 FAAPPHPHANPPGAVGPPRLQALKDEPQTVPEAPSFGESPP 236
>gnl|CDD|223031 PHA03273, PHA03273, envelope glycoprotein C; Provisional.
Length = 486
Score = 34.6 bits (79), Expect = 0.54
Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 3/102 (2%)
Query: 1539 TYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1598
+ G S +S + + + S +PT + + TSP + T S + +
Sbjct: 20 AILTYASGASTSSSIENSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNANGTESTT 79
Query: 1599 TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYS-PTSPSYS 1639
+ P S + T + P Y + + +YS
Sbjct: 80 QAS--QPHSHETTITCTKSLISVPYYKSVDMNCTTSVGVNYS 119
Score = 33.8 bits (77), Expect = 0.88
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 3/99 (3%)
Query: 1493 TSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP 1552
T + G S SS + + S +PT + TSP + T S ++ G T+
Sbjct: 23 TYASGASTSSSIENSDNSTAEMQSTPATPTHTTSNLTSPFGTGTD--NSTNANGTESTTQ 80
Query: 1553 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYS 1590
A P S + T + P Y + + +YS
Sbjct: 81 ASQPHSHETTITCTKSLISVPYYKSVDMNCTTSVGVNYS 119
Score = 33.8 bits (77), Expect = 0.96
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 1585 TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
S + + +S S S + ++PA +PT + TSP + T S + + +
Sbjct: 25 ASGASTSSSIENSDNSTAEMQSTPA-TPTHTTSNLTSPFGTGTDNSTNANGTESTTQAS- 82
Query: 1645 YSPTSPSYSPTSPSYSPTSPAYSPTSPGYS-PTSPSYS 1681
P S + T + P Y + +YS
Sbjct: 83 -QPHSHETTITCTKSLISVPYYKSVDMNCTTSVGVNYS 119
Score = 33.4 bits (76), Expect = 1.2
Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 1606 TSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1665
S A + +S + + S +PT + + TSP + T S + + A
Sbjct: 25 ASGASTSSSIE-NSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNANGTESTTQ--A 81
Query: 1666 YSPTSPGYSPTSPSYSPTSPTYSP 1689
P S + T + P Y
Sbjct: 82 SQPHSHETTITCTKSLISVPYYKS 105
Score = 33.0 bits (75), Expect = 1.7
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 3/95 (3%)
Query: 1525 GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1584
G S +S + + T S +PT + TSP + T S + + + P
Sbjct: 27 GASTSSSIENSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNANGTESTTQAS--QP 84
Query: 1585 TSPSYSPTSPSYSPTSPSYSP-TSPAYSPTSPAYS 1618
S + T + P Y + YS
Sbjct: 85 HSHETTITCTKSLISVPYYKSVDMNCTTSVGVNYS 119
Score = 33.0 bits (75), Expect = 1.8
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Query: 1513 SPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYS-PT 1571
S S S + S +P +PT++ S+ + + T+ + + ++ S P
Sbjct: 26 SGASTSSSIENSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNANGTESTTQASQPH 85
Query: 1572 SPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYS 1604
S + T + P Y + + +YS
Sbjct: 86 SHETTITCTKSLISVPYYKSVDMNCTTSVGVNYS 119
Score = 32.7 bits (74), Expect = 2.0
Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 1599 TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY-----SPTSPSYS 1653
S + + +S S S A ++PA +PT + + TSP + T S T+ +
Sbjct: 25 ASGASTSSSIENSDNSTAEMQSTPA-TPTHTTSNLTSPFGTGTDNSTNANGTESTTQASQ 83
Query: 1654 PTSPSYSPTSPAYSPTSPGYSPTSPSYS-PTSPTYS 1688
P S + T + P Y + + YS
Sbjct: 84 PHSHETTITCTKSLISVPYYKSVDMNCTTSVGVNYS 119
Score = 32.7 bits (74), Expect = 2.1
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPT--SPGYSPTSPTYSPSSPGYS 1548
S +SS S +S S+P +PT + TSP + T S + T T S
Sbjct: 29 STSSSIENSDNSTAEMQSTP-ATPTHTTSNLTSPFGTGTDNSTNANGTESTTQAS----Q 83
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYS 1583
P S + T + P Y + + +YS
Sbjct: 84 PHSHETTITCTKSLISVPYYKSVDMNCTTSVGVNYS 119
Score = 32.3 bits (73), Expect = 2.7
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 5/98 (5%)
Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSL 1705
S S S S + + S +PT + + TSP + T S N + +
Sbjct: 26 SGASTSSSIENS----DNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNANGTESTTQA 81
Query: 1706 AYSPSSPRLSPASPYSPTSPNYSP-TSSSYSPTSPSYS 1742
+ S + + P Y + + +YS
Sbjct: 82 SQPHSHETTITCTKSLISVPYYKSVDMNCTTSVGVNYS 119
Score = 32.3 bits (73), Expect = 2.8
Identities = 19/96 (19%), Positives = 30/96 (31%), Gaps = 6/96 (6%)
Query: 1583 SPTSPSYSPTSPSYSP---TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS 1639
S S S S + S S +PT + TSP + T + + + +
Sbjct: 26 SGASTSSSIENSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNANGTESTTQAS--Q 83
Query: 1640 PTSPSYSPTSPSYSPTSPSYSP-TSPAYSPTSPGYS 1674
P S + T + P Y + YS
Sbjct: 84 PHSHETTITCTKSLISVPYYKSVDMNCTTSVGVNYS 119
Score = 31.9 bits (72), Expect = 3.6
Identities = 15/94 (15%), Positives = 36/94 (38%), Gaps = 2/94 (2%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS-PT 1592
S S + S + S +P +P+++ ++ + + + + T+ + + ++ S P
Sbjct: 26 SGASTSSSIENSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNANGTESTTQASQPH 85
Query: 1593 SPSYSPTSPSYSPTSPAYSP-TSPAYSPTSPAYS 1625
S + T + P Y + YS
Sbjct: 86 SHETTITCTKSLISVPYYKSVDMNCTTSVGVNYS 119
>gnl|CDD|219420 pfam07466, DUF1517, Protein of unknown function (DUF1517). This
family consists of several hypothetical glycine rich
plant and bacterial proteins of around 300 residues in
length. The function of this family is unknown.
Length = 280
Score = 33.8 bits (78), Expect = 0.63
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 6/49 (12%)
Query: 1485 VGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGY 1533
+GG +F S SP S SP G+ G+ P +
Sbjct: 8 IGGGSFRAPSRSSSSPRSSSPGGGGYYGSP-GGGF-----GFPFLIPFF 50
Score = 33.1 bits (76), Expect = 1.3
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 1731 SSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQY 1770
S +P+ S SP S + Y + GG + P +
Sbjct: 11 GSFRAPSRSSSSPRSSSPGGGGYYGSPGGGFGFPFLIPFF 50
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 34.0 bits (78), Expect = 0.74
Identities = 26/104 (25%), Positives = 35/104 (33%), Gaps = 14/104 (13%)
Query: 1613 TSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP-TSPSYSPTSPAYSPTSP 1671
+ +P + P P P SP P T S+ P S + P + Y P
Sbjct: 121 KALGANPVTATGEPV-PQ-MPASPPGPEGEPQPGNTPVSFPPQGSVAVPPPTAFY----P 174
Query: 1672 GYSPTSP---SYSPTSPT--YSPTSPSYNPQSAKYSPSLAYSPS 1710
G T P +Y + +YN PSL Y PS
Sbjct: 175 GNGVTPPPQVTYQSVPVPNRIQRKTFTYNEGKKG--PSLPYIPS 216
Score = 31.3 bits (71), Expect = 5.0
Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 1735 SPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQ 1794
P P+ SP P P P S + P P+A Y + P T Q P
Sbjct: 135 VPQMPA-SPPGPEGEPQPGNTPVSFPPQGSVAVP--PPTAFYPGNGVTPPPQVTYQSVPV 191
Query: 1795 TNRDDSTT 1802
NR T
Sbjct: 192 PNRIQRKT 199
>gnl|CDD|227270 COG4934, COG4934, Predicted protease [Posttranslational modification,
protein turnover, chaperones].
Length = 1174
Score = 34.3 bits (79), Expect = 0.75
Identities = 57/331 (17%), Positives = 93/331 (28%), Gaps = 34/331 (10%)
Query: 1462 SPGYLFSPNLRLSPVTDAQFSPY---VGGMAFSPT----------SSPGYSPSSPGYSPS 1508
S Y +P LS A SPY VGG S ++ GYS PG S
Sbjct: 368 SGAYDDTPTPYLSVNFPAS-SPYVTSVGGYPISNAKFTSNGSFTETAWGYSSYGPGSVGS 426
Query: 1509 SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY 1568
GYS P P + ++P Y+ + + TS +
Sbjct: 427 GGGYSIFFP--RPWYQDGPSVPSTGRLIPDVVAIANP-YTGVVIVFGNQTYVAGGTSLA- 482
Query: 1569 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1628
+P + Y T +P + Y +
Sbjct: 483 -------TPLTAGIIADIEQYIGTLLGLVNPIGYQGIINPLLYNIGYQITFGYNGYYTAN 535
Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS 1688
Y+P S + T ++ + S + + Y T + + T
Sbjct: 536 SGYNPVLGGL--GSIYNNLTGSGWNFLTGYGSINAFNITYDLINYVGTVENINLTEAFSG 593
Query: 1689 PTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPS---S 1745
YN SL++ + + S + S S T +Y+ S S
Sbjct: 594 TI---YNDSGLLAFGSLSFGGTYWGGNFVSTGGNYNIVASNLSGMTYIT-FNYTISFIYS 649
Query: 1746 PTYSPSSPYNAGGGNPDYSPSSPQYSPSAGY 1776
P+Y + + P+ P+ G
Sbjct: 650 PSYLAPTFLGNSYSYDYFLPNIGIMRPAVGV 680
Score = 32.0 bits (73), Expect = 4.2
Identities = 53/340 (15%), Positives = 79/340 (23%), Gaps = 76/340 (22%)
Query: 1495 SPGYSPSSPGYSPSSPGY-----SPTSPGYS-PTSPG-----YSPTSPG-YSPTSP--TY 1540
GY ++ GY+P G + T G++ T G Y T
Sbjct: 528 YNGYYTANSGYNPVLGGLGSIYNNLTGSGWNFLTGYGSINAFNITYDLINYVGTVENINL 587
Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPS--------------YSPTSPSYSPT-------S 1579
+ + G + S S T
Sbjct: 588 TEAFSGTIYNDSGLLAFGSLSFGGTYWGGNFVSTGGNYNIVASNLSGMTYITFNYTISFI 647
Query: 1580 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS 1639
S S +P++ S SY P+ PA S + P + ++
Sbjct: 648 YSPSYLAPTFLGNSYSYDYFLPNIGIMRPAVGVN--MIGVYDNLVSLSVPILNVNPEGFA 705
Query: 1640 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
P S YS P Y S G S S +P
Sbjct: 706 Y--PGLSEGQYRYSGIGPQY--DYLGIGVMSNGSPVAQAVVFLISVNVSQLTPII----- 756
Query: 1700 KYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYS-PSSPTYSPSSPYNAGG 1758
Y+P S+ + T + + +P
Sbjct: 757 ---------------QYVISYAPPFTTGLFLSNGTAYTVYWNGNLIAESNGTLTPQTIQF 801
Query: 1759 GNPDYSPSS-------PQYS---PSAGYSPSAPGYSPSST 1788
YS S+ PQ P + GY SS
Sbjct: 802 NTT-YSGSNTVTNQTIPQVGLLIPLFKFV---YGYYYSSA 837
>gnl|CDD|218994 pfam06333, Med13_C, Mediator complex subunit 13 C-terminal. Mediator
is a large complex of up to 33 proteins that is conserved
from plants through fungi to humans - the number and
representation of individual subunits varying with
species. It is arranged into four different sections, a
core, a head, a tail and a kinase-activity part, and the
number of subunits within each of these is what varies
with species. Overall, Mediator regulates the
transcriptional activity of RNA polymerase II but it
would appear that each of the four different sections has
a slightly different function. Med13 is part of the
ancillary kinase module, together with Med12, CDK8 and
CycC, which in yeast is implicated in transcriptional
repression, though most of this activity is likely
attributable to the CDK8 kinase. The large Med12 and
Med13 proteins are required for specific developmental
processes in Drosophila, zebrafish, and Caenorhabditis
elegans but their biochemical functions are not
understood.
Length = 406
Score = 33.9 bits (78), Expect = 0.77
Identities = 33/159 (20%), Positives = 47/159 (29%), Gaps = 22/159 (13%)
Query: 1564 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPA 1623
T P P P+ P S TS S ++P +P + S+ SP +P
Sbjct: 227 TDPKLVPDPPT-QPIPFSRFNTSNS---STPQSTPCTLSFP--SPDQFGNAPTPPLGENG 280
Query: 1624 YSPTSPSYSPTSPS-YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT----SPGYSPTSP 1678
P P SPS P S ++ P S S T + GY
Sbjct: 281 NDNAPPVTPPGSPSESDPDSILVDIDDETWGVILSHRLPLSN--SLTRLALASGY----- 333
Query: 1679 SYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
T+ PT + +L P +
Sbjct: 334 -LVKTAKAQGPTFL---DTALVMEVNLLNCPRNHSDYEH 368
Score = 31.5 bits (72), Expect = 4.1
Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 1529 TSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSP 1587
T P P PT P TS + ++P +P + S+ SP +PT P
Sbjct: 227 TDPKLVPDPPT-QPIPFSRFNTSNS---STPQSTPCTLSFPSPDQFGNAPTPPL-GENGN 281
Query: 1588 SYSPTSPSYSPTSPSYS 1604
+P S S
Sbjct: 282 DNAPPVTPPGSPSESDP 298
Score = 31.2 bits (71), Expect = 5.4
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSP 1608
T P P P+ P S TS S ++P +P + S+ SP +PT P
Sbjct: 227 TDPKLVPDPPT-QPIPFSRFNTSNS---STPQSTPCTLSFPSPDQFGNAPTPPL-GENGN 281
Query: 1609 AYSPTSPAYSPTSPAYS 1625
+P S +
Sbjct: 282 DNAPPVTPPGSPSESDP 298
>gnl|CDD|218693 pfam05687, DUF822, Plant protein of unknown function (DUF822). This
family consists of the N terminal regions of several
plant proteins of unknown function.
Length = 151
Score = 32.4 bits (74), Expect = 0.83
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 1546 GYSPTSPAYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPS 1602
G P +S + SP S SY + S + SP SYS + S S SPS + P
Sbjct: 72 GCKPLERMEGAGSSATASPCS-SYQLSPVSSAFPSPVPSYSASPASSSFPSPSSLDSIPI 130
Query: 1603 YSPTSP 1608
S S
Sbjct: 131 SSAASL 136
Score = 31.7 bits (72), Expect = 1.9
Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 1525 GYSPTSPGYSP-TSPTYSP-SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1582
G P +S T SP SS SP S A+ PSYS + S S SPS + P
Sbjct: 72 GCKPLERMEGAGSSATASPCSSYQLSPVSSAFPSPVPSYSASPASSSFPSPSSLDSIPIS 131
Query: 1583 SPTSPS 1588
S S
Sbjct: 132 SAASLL 137
Score = 30.5 bits (69), Expect = 3.8
Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 1536 TSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTS 1593
P G S T+ SP S SY + S + SP SYS + S S SPS +
Sbjct: 73 CKPLERMEGAGSSATA---SPCS-SYQLSPVSSAFPSPVPSYSASPASSSFPSPSSLDSI 128
Query: 1594 PSYSPTSPS 1602
P S S
Sbjct: 129 PISSAASLL 137
Score = 30.1 bits (68), Expect = 5.1
Identities = 26/83 (31%), Positives = 29/83 (34%), Gaps = 18/83 (21%)
Query: 1672 GYSPTSPSYSP-TSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPT 1730
G P +S T SP S Y S SS SP YS SP
Sbjct: 72 GCKPLERMEGAGSSATASPCSS--------YQLS---PVSSAFPSPVPSYSA-----SPA 115
Query: 1731 SSSY-SPTSPSYSPSSPTYSPSS 1752
SSS+ SP+S P S S
Sbjct: 116 SSSFPSPSSLDSIPISSAASLLP 138
Score = 30.1 bits (68), Expect = 5.3
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 1554 YSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPSYSPTSPAY 1610
P +S + SP S SY + S + SP SYS + S S SPS + P
Sbjct: 73 CKPLERMEGAGSSATASPCS-SYQLSPVSSAFPSPVPSYSASPASSSFPSPSSLDSIPIS 131
Query: 1611 SPTSP 1615
S S
Sbjct: 132 SAASL 136
Score = 30.1 bits (68), Expect = 6.0
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 1574 SYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYS 1632
P +S + SP S SY + S + SP P+YS + + S SPS
Sbjct: 72 GCKPLERMEGAGSSATASPCS-SYQLSPVSSAFPSPV-----PSYSASPASSSFPSPSSL 125
Query: 1633 PTSPSYSPTSPS 1644
+ P S S
Sbjct: 126 DSIPISSAASLL 137
Score = 29.8 bits (67), Expect = 6.8
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 1560 SYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPAYSPTSPA 1616
P +S + SP S SY + S + SP SYS + S S SP+ + P
Sbjct: 72 GCKPLERMEGAGSSATASPCS-SYQLSPVSSAFPSPVPSYSASPASSSFPSPSSLDSIPI 130
Query: 1617 YSPTSP 1622
S S
Sbjct: 131 SSAASL 136
Score = 29.8 bits (67), Expect = 6.9
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 1617 YSPTSPAYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPSYSPTSPAYSPTSPGY 1673
P +S + SP S SY + S + SP SYS + S S SP+ + P
Sbjct: 73 CKPLERMEGAGSSATASPCS-SYQLSPVSSAFPSPVPSYSASPASSSFPSPSSLDSIPIS 131
Query: 1674 SPTSPS 1679
S S
Sbjct: 132 SAASLL 137
Score = 29.8 bits (67), Expect = 8.6
Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 1588 SYSPTSPSYSP-TSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1646
P +S + SP S Y + + + SP PSYS + S S SPS
Sbjct: 72 GCKPLERMEGAGSSATASPCSS-YQLSPVSSAFPSPV-----PSYSASPASSSFPSPSSL 125
Query: 1647 PTSPSYSPTSPS 1658
+ P S S
Sbjct: 126 DSIPISSAASLL 137
Score = 29.4 bits (66), Expect = 9.8
Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 1567 SYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSP--SYSPTSPAYSPTSPAYSPTSPA 1623
P +S + SP S SY + S + SP SYS + + S SP+ + P
Sbjct: 72 GCKPLERMEGAGSSATASPCS-SYQLSPVSSAFPSPVPSYSASPASSSFPSPSSLDSIPI 130
Query: 1624 YSPTSPS 1630
S S
Sbjct: 131 SSAASLL 137
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 33.5 bits (76), Expect = 0.85
Identities = 17/77 (22%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 1662 TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS 1721
T+ + T+ + T+PS + S PS ++ + P+ PS+ +P +
Sbjct: 17 TTGVITTTTQAANATTPSSTKVEAPQST-PPSTKVEAPQSKPNATTPPSTKVEAPQQTPN 75
Query: 1722 PTSPNYSPTSSSYSPTS 1738
T+P+ + + SPT+
Sbjct: 76 ATTPSSTKVETPQSPTT 92
Score = 32.7 bits (74), Expect = 1.8
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 1613 TSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
T+ + T+ A + T+PS + S PS +P P + + P S
Sbjct: 17 TTGVITTTTQAANATTPSSTKVEAPQST-PPSTKVEAPQSKPNATT--PPSTKVEAPQQT 73
Query: 1673 YSPTSPSYS----PTSPTYSPTSPSYNPQ 1697
+ T+PS + P SPT NP+
Sbjct: 74 PNATTPSSTKVETPQSPTTKQVPTEINPK 102
Score = 31.9 bits (72), Expect = 2.9
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
T+ + T+ + + T+PS + S PS +P P A +P S +
Sbjct: 17 TTGVITTTTQAANATTPSSTKVEAPQST-PPSTKVEAPQSKPN--ATTPPSTKVEAPQQT 73
Query: 1631 YSPTSPSYSPTSPSYSPTS 1649
+ T+PS + SPT+
Sbjct: 74 PNATTPSSTKVETPQSPTT 92
Score = 31.5 bits (71), Expect = 3.7
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 1676 TSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYS 1735
T+ + T+ + T+PS A S + +P+ P + +P S + +
Sbjct: 17 TTGVITTTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKP-NATTPPSTKVEAPQQTPN 75
Query: 1736 PTSPSYS----PSSPT 1747
T+PS + P SPT
Sbjct: 76 ATTPSSTKVETPQSPT 91
Score = 31.1 bits (70), Expect = 5.5
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 1578 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
T+ + T+ + + T+PS + S P+ +P P A +P S +
Sbjct: 17 TTGVITTTTQAANATTPSSTKVEAPQST-PPSTKVEAPQSKPN--ATTPPSTKVEAPQQT 73
Query: 1638 YSPTSPSYSPTSPSYSPTS 1656
+ T+PS + SPT+
Sbjct: 74 PNATTPSSTKVETPQSPTT 92
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 34.3 bits (78), Expect = 0.87
Identities = 41/176 (23%), Positives = 61/176 (34%), Gaps = 21/176 (11%)
Query: 1497 GYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSP-SSPGYSPTSPAYS 1555
P S S + YS + S + S + G+S + S+PGY + S
Sbjct: 380 AGGPHSNA-SYNCAAYS--NAAQS--NAAQS--NAGFSNAGYSNPGNSNPGY--NNAPNS 430
Query: 1556 PT---SPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
T +P S T S P S P YS S +P YS S +P S + S AY
Sbjct: 431 NTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTP----YSNAPLSNAPPSSAKDHHS-AYH 485
Query: 1612 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY--SPTSPA 1665
+ PA + + + + + S S S Y + + A
Sbjct: 486 AAYQHRAANQPAANLPTANQPAANNFHGAAGNSVGNPFASRPFGSAPYGGNAATTA 541
Score = 33.5 bits (76), Expect = 1.4
Identities = 42/192 (21%), Positives = 65/192 (33%), Gaps = 8/192 (4%)
Query: 1562 SPTSPSYSPTSPSYSPTSPS-YSPTSPSYSP-TSPSYSPTSPSYSPTS-PAYSPTSPAYS 1618
S +YS + S + S + +S S ++P Y+ S +P + P S T +
Sbjct: 388 SYNCAAYSNAAQSNAAQSNAGFSNAGYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSNP 447
Query: 1619 PTS-PAYSPTSPSYSPTS-PSYSPTSPSYSPTSPS-YSPTSPSYSPTSPAYSPTSPGYSP 1675
P S P YS S +P S S PS + S Y + PA + +
Sbjct: 448 PNSNPPYSNLPYSNTPYSNAPLSNAPPSSAKDHHSAYHAAYQHRAANQPAANLPTANQPA 507
Query: 1676 TSPSYSPTSPTYSPTSPSYNPQSAKY--SPSLAYSPSSPRLSPASPYSPTSPNYSPTSSS 1733
+ + + S SA Y + + P+ P T+ S
Sbjct: 508 ANNFHGAAGNSVGNPFASRPFGSAPYGGNAATTADPNGIAKREDHPEGGTNRQKYEQSDE 567
Query: 1734 YSPTSPSYSPSS 1745
S S S SS
Sbjct: 568 ESVESSSSENSS 579
Score = 33.1 bits (75), Expect = 2.0
Identities = 43/213 (20%), Positives = 75/213 (35%), Gaps = 38/213 (17%)
Query: 1604 SPTSPAYSPTSPAYSPTSPA-YSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
S AYS + + + S A +S S ++P Y + S T P +P + +
Sbjct: 388 SYNCAAYSNAAQSNAAQSNAGFSNAGYSNPGNSNPGY--NNAPNSNT-PYNNPPNSNTPY 444
Query: 1662 TSPAYSPTSPGYSPTSPSYSPTS-PTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPY 1720
++P S +P YS S +P S S PS SAK S
Sbjct: 445 SNPPNS--NPPYSNLPYSNTPYSNAPLSNAPPS----SAKDHHSA--------------- 483
Query: 1721 SPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSA 1780
Y + P+ + + ++ ++ GN +P + + SA Y
Sbjct: 484 ------YHAAYQHRAANQPAANLPTANQPAANNFHGAAGNSVGNPFASRPFGSAPY---- 533
Query: 1781 PGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKS 1813
G + ++T+ R+D K ++S
Sbjct: 534 -GGNAATTADPNGIAKREDHPEGGTNRQKYEQS 565
Score = 32.4 bits (73), Expect = 3.4
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 1486 GGMAFSPTSSPGYSP---SSPGYSP---SSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT 1539
G A P S+ Y+ S+ S S+ G+S GY ++PG ++PGY+ +
Sbjct: 377 GAWAGGPHSNASYNCAAYSNAAQSNAAQSNAGFSNA--GY--SNPGN--SNPGYNNAPNS 430
Query: 1540 YSP-SSPGYSPT---SPAYSPTSPSYSPTS-PSYSPTSPSYSPTSPS 1581
+P ++P S T +P S S P S YS S +P S +
Sbjct: 431 NTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNAPPSSA 477
>gnl|CDD|218803 pfam05904, DUF863, Plant protein of unknown function (DUF863). This
family consists of a number of hypothetical proteins from
Arabidopsis thaliana and Oryza sativa. The function of
this family is unknown.
Length = 766
Score = 33.9 bits (77), Expect = 0.90
Identities = 54/248 (21%), Positives = 77/248 (31%), Gaps = 14/248 (5%)
Query: 1499 SPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTS 1558
PS G S+ + P T + ++ SPG S SP S +
Sbjct: 181 LPSQEGQVLSNKAFQP--RYSLLTDQSKCKYVRERTSSNLEVQNKSPGVSYQSPLESSVA 238
Query: 1559 PSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSY-----SPTSPAYS 1611
+ +P Y P S S+S S S+ S S P S + S T+
Sbjct: 239 SNLPRLNPFYRPDSAKSWSHWSSSWENMSSGLDQKSTPLNSAQTQPVLSFETSSTANPSF 298
Query: 1612 PTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY----SPTSPAYS 1667
TS + ++ Y+ S S SP ++ T +Y S T S+ P S S
Sbjct: 299 GTSCCSTNSNGFYNGFSSG-SKESPFFASTGFNYPNISSGEEATEHSFVELQGPKSEECS 357
Query: 1668 PTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY 1727
P P S S N PS + P S + S N
Sbjct: 358 SGLPWLRKKPTCKGPLDLNASSAFYSSNANVIDVEPSNSQKQRKILGFPISDKASVSNNE 417
Query: 1728 SPTSSSYS 1735
+ S
Sbjct: 418 KESLICGS 425
>gnl|CDD|223044 PHA03325, PHA03325, nuclear-egress-membrane-like protein;
Provisional.
Length = 418
Score = 33.7 bits (77), Expect = 0.91
Identities = 27/160 (16%), Positives = 45/160 (28%), Gaps = 1/160 (0%)
Query: 1498 YSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT 1557
+ S+ + S P +P + + S P P S P
Sbjct: 257 LTSSAFMLNSSLPTSAPKRRSRRAGAMRAAAGETADLADDDGSEHSDPEPLPASLPPPPV 316
Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1617
P P + + + P P+ S +S S S ++ S + A
Sbjct: 317 R-RPRVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQNKDSGSTGPGSSLAAAS 375
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1657
S + P TS + P+ S P P +
Sbjct: 376 SFLEDDDFGSPPLDLTTSLRHMPSPSVTSAPEPPSIPLTY 415
Score = 31.8 bits (72), Expect = 4.3
Identities = 23/117 (19%), Positives = 35/117 (29%), Gaps = 5/117 (4%)
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
PA P P P P P + + + P P+ S +S S
Sbjct: 304 PEPLPASLPPPPVRRP-----RVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSSAQ 358
Query: 1608 PAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1664
S ++ S + A S + P TS + P+ S P P +
Sbjct: 359 NKDSGSTGPGSSLAAASSFLEDDDFGSPPLDLTTSLRHMPSPSVTSAPEPPSIPLTY 415
Score = 31.4 bits (71), Expect = 4.8
Identities = 24/119 (20%), Positives = 36/119 (30%), Gaps = 5/119 (4%)
Query: 1567 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP 1626
S P+ P P P P P + + A P PA S +S S
Sbjct: 302 SDPEPLPASLPPPPVRRP-----RVKHPEAGKEEPDGARNAEAKEPAQPATSTSSKGSSS 356
Query: 1627 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
S ++ S + + S + P TS + P+ S P P +
Sbjct: 357 AQNKDSGSTGPGSSLAAASSFLEDDDFGSPPLDLTTSLRHMPSPSVTSAPEPPSIPLTY 415
>gnl|CDD|221188 pfam11725, AvrE, Pathogenicity factor. This family is secreted by
gram-negative Gammaproteobacteria such as Pseudomonas
syringae of tomato and the fire blight plant pathogen
Erwinia amylovora, amongst others. It is an essential
pathogenicity factor of approximately 198 kDa. Its
injection into the host-plant is dependent upon the
bacterial type III or Hrp secretion system. The family is
long and carries a number of predicted functional
regions, including an ERMS or endoplasmic reticulum
membrane retention signal at both the C- and the
N-termini, a leucine-zipper motif from residues 539-560,
and a nuclear localisation signal at 1358-1361. this
conserved AvrE-family of effectors is among the few that
are required for full virulence of many phytopathogenic
pseudomonads, erwinias and pantoeas.
Length = 1771
Score = 34.0 bits (78), Expect = 0.93
Identities = 35/216 (16%), Positives = 56/216 (25%), Gaps = 5/216 (2%)
Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPS 1630
T + +PT S SP+ + S + + +S + +P+
Sbjct: 19 TPSAGAPTGLQQSSESPTQRASHSLASEGKKNRKKMPKVFQKSSAPRQIQAAPPQALNPT 78
Query: 1631 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT 1690
+ S PT T S S S G + P P
Sbjct: 79 AAAPQSSRGPTLRELLALPEDDGETQAPESSPSARRLTRSEGVARHEMEDLAGRPVVKPD 138
Query: 1691 SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSP 1750
+ Q S + P + S P + S + +
Sbjct: 139 ADRQLRQDILNKSSSSRRPPVSKEEGTSSKMPATALASAALFKDDEIRQEVDAARSDQAS 198
Query: 1751 SSPYNAGGGNP-----DYSPSSPQYSPSAGYSPSAP 1781
S + GNP D +P P + SAG
Sbjct: 199 QSRLSRSRGNPPAIPPDAAPRQPMLTRSAGGRFEGE 234
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional.
Length = 417
Score = 33.8 bits (77), Expect = 0.98
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 1674 SPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSS--PRLSPASPYSPTSPNYSPTS 1731
S T S +S T SPT+ S S S+ + + P P S SP+
Sbjct: 5 STTLSSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSE--------SPSP 56
Query: 1732 SSYSPTSPSYSPSSPTYSPSSPYN 1755
+S S +S S S SS TY N
Sbjct: 57 NSNSSSSSSSSSSSITYDYEYENN 80
Score = 33.1 bits (75), Expect = 1.3
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 1588 SYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPT-SPAYSPTSPSYSPTSPSYSPTSPSYS 1646
+ S T S +S + SPT+ TS S + ++ P+ PTS S SP S S S
Sbjct: 3 NSSTTLSSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSESPSPNSNSSS 62
Query: 1647 PTSPSYSPTSPSY 1659
+S S S + Y
Sbjct: 63 SSSSSSSSITYDY 75
Score = 33.1 bits (75), Expect = 1.5
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYS 1653
+ S T S +S SPT+ TS S + +++ P+ PTS S SP S S S
Sbjct: 3 NSSTTLSSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSESPSPNSNSSS 62
Query: 1654 PTSPSYSPTSPAY 1666
+S S S + Y
Sbjct: 63 SSSSSSSSITYDY 75
Score = 32.3 bits (73), Expect = 2.3
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 1534 SPTSPTYSPSSPGYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPT 1592
S T + SS SPT+ TS S + +++ P+ PTS S SP S S S +
Sbjct: 5 STTLSSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSESPSPNSNSSSSS 64
Query: 1593 SPSYSPTSPSY 1603
S S S + Y
Sbjct: 65 SSSSSSITYDY 75
Score = 31.9 bits (72), Expect = 3.1
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPAYSPTSPAYS 1618
+ S T S +S + SPT+ TS S + +++ P+ PTS + SP S + S
Sbjct: 3 NSSTTLSSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSESPSPNSNSSS 62
Query: 1619 PTSPAYSPTSPSY 1631
+S + S + Y
Sbjct: 63 SSSSSSSSITYDY 75
Score = 31.9 bits (72), Expect = 3.6
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
S T S +S + SPT+ TS S + +++ P PTS SP+ S S +
Sbjct: 5 STTLSSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSE--SPSPNSNSSS 62
Query: 1684 SPTYSPTSPSYN 1695
S + S +S +Y+
Sbjct: 63 SSSSSSSSITYD 74
Score = 31.5 bits (71), Expect = 4.2
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 1550 TSPAYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1608
+S SPT+ TS S + +++ P+ PTS S SP S S S +S S S +
Sbjct: 14 SSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSESPSPNSNSSSSSSSSSSSITY 73
Query: 1609 AY 1610
Y
Sbjct: 74 DY 75
Score = 31.5 bits (71), Expect = 5.1
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT-SPAYSPTSPGYSPTSPSYSPTSPTYS 1688
+ S T S +S + SPT+ TS S + ++ P PTS S SP S + S
Sbjct: 3 NSSTTLSSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSESPSPNSNSSS 62
Query: 1689 PTSPSYNPQSAKY 1701
+S S + + Y
Sbjct: 63 SSSSSSSSITYDY 75
Score = 31.1 bits (70), Expect = 6.4
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPAYSPTSPGYSPT 1676
S T + +S + SPT+ TS S + +++ P+ PTS SP+ S +
Sbjct: 5 STTLSSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSE--SPSPNSNSSS 62
Query: 1677 SPSYSPTSPTY 1687
S S S +S TY
Sbjct: 63 SSSSSSSSITY 73
Score = 31.1 bits (70), Expect = 6.4
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 1602 SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYS 1660
+ S T + +S SPT+ TS S + +++ P+ PTS S SP S S S
Sbjct: 3 NSSTTLSSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSESPSPNSNSSS 62
Query: 1661 PTSPAYSPTSPGY 1673
+S + S + Y
Sbjct: 63 SSSSSSSSITYDY 75
Score = 30.8 bits (69), Expect = 7.2
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 1611 SPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT-SPSYSPTSPSYSPTSPSYSPTSPAYSPT 1669
S T + +S SPT+ TS S + +++ P+ PTS S SP S + S +
Sbjct: 5 STTLSSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSESPSPNSNSSSSS 64
Query: 1670 SPGYSPTSPSY 1680
S S + Y
Sbjct: 65 SSSSSSITYDY 75
Score = 30.8 bits (69), Expect = 8.1
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 1520 SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPT-SPAYSPTSPSYSPTSPSYSPTSPSYSPT 1578
S T +S SPT+ +S S + ++ P+ PTS S SP S S S +
Sbjct: 5 STTLSSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSESPSPNSNSSSSS 64
Query: 1579 SPSYSPTSPSY 1589
S S S + Y
Sbjct: 65 SSSSSSITYDY 75
Score = 30.8 bits (69), Expect = 8.3
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 1527 SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPT-SPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
S T +S T SP++ TS S + +++ P+ PTS S SP S S S +
Sbjct: 5 STTLSSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEIPTSESPSPNSNSSSSS 64
Query: 1586 SPSYSPTSPSY 1596
S S S + Y
Sbjct: 65 SSSSSSITYDY 75
>gnl|CDD|219055 pfam06484, Ten_N, Teneurin Intracellular Region. This family is
found in the intracellular N-terminal region of the
Teneurin family of proteins. These proteins are
'pair-rule' genes and are involved in tissue patterning,
specifically probably neural patterning. The
intracellular domain is cleaved in response to homophilic
interaction of the extracellular domain, and translocates
to the nucleus. Here it probably carries out to some
transcriptional regulatory activity. The length of this
region and the conservation suggests that there may be
two structural domains here (personal obs:C Yeats).
Length = 370
Score = 33.4 bits (76), Expect = 1.0
Identities = 45/188 (23%), Positives = 76/188 (40%), Gaps = 12/188 (6%)
Query: 1598 PTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP-SYSPTS 1656
P S + +SP SP P+ A ++ + S S P S+ +
Sbjct: 161 PLHCSSASSSPVEQLPSP--PPSPAANECQGRLLGSSAAQAAQDSDSEDEFGPNSFLVKT 218
Query: 1657 PSYSPTSPAYSPTSPG-YSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLS 1715
S + +PA + SPG + S +P P SPS++ S SL S + R +
Sbjct: 219 GSGNLATPAQASASPGNFQNHSRLRTPPLPLSHSHSPSHHAASIN---SLNRSNYTQRSN 275
Query: 1716 PA-SPYSPTSPNYSPTSSSYSPTSPSYSPSS--PTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
P+ +P ++P P S ++ +S P + + GG +P + +SP Y
Sbjct: 276 PSPAPTDSSTPPEGPGSQDSVSAQDNWLLNSNVPLETRHFLFKPGGTSPLFCTTSPGYPL 335
Query: 1773 SAG--YSP 1778
++ YSP
Sbjct: 336 TSSTVYSP 343
Score = 32.7 bits (74), Expect = 2.0
Identities = 46/181 (25%), Positives = 65/181 (35%), Gaps = 27/181 (14%)
Query: 1491 SPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPG-YSPTS-PTYSPSSPGYS 1548
S +SSP SP SP++ G S S + P S + S +
Sbjct: 166 SASSSPVEQLPSPPPSPAANECQGRLLGSSAAQAAQDSDSEDEFGPNSFLVKTGSGNLAT 225
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTS 1607
P + SP ++ S +P P SPS+ S + S +Y+ S PS +PT
Sbjct: 226 PAQASASP--GNFQNHSRLRTPPLPLSHSHSPSHHAASIN-SLNRSNYTQRSNPSPAPTD 282
Query: 1608 PAYSPTSPAYSPTSPAY--------------------SPTSPSYSPTSPSYSPTSPS-YS 1646
+ P P + A TSP + TSP Y TS + YS
Sbjct: 283 SSTPPEGPGSQDSVSAQDNWLLNSNVPLETRHFLFKPGGTSPLFCTTSPGYPLTSSTVYS 342
Query: 1647 P 1647
P
Sbjct: 343 P 343
Score = 31.9 bits (72), Expect = 3.5
Identities = 43/186 (23%), Positives = 64/186 (34%), Gaps = 41/186 (22%)
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSY------SPTSPSYSPTSP--SYSPTS------- 1579
P + + SSP SP SP + S + + + + P S
Sbjct: 161 PLHCSSASSSPVEQLPSPPPSPAANECQGRLLGSSAAQAAQDSDSEDEFGPNSFLVKTGS 220
Query: 1580 -PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS-PS 1637
+P S SP ++ S +P P SP++ + S +Y+ S PS
Sbjct: 221 GNLATPAQASASP--GNFQNHSRLRTPPLPLSHSHSPSHH-AASINSLNRSNYTQRSNPS 277
Query: 1638 YSPTSPSYSPTSPSYSPTSPSY--------------------SPTSPAYSPTSPGYSPTS 1677
+PT S P P + + TSP + TSPGY TS
Sbjct: 278 PAPTDSSTPPEGPGSQDSVSAQDNWLLNSNVPLETRHFLFKPGGTSPLFCTTSPGYPLTS 337
Query: 1678 PS-YSP 1682
+ YSP
Sbjct: 338 STVYSP 343
Score = 31.5 bits (71), Expect = 4.7
Identities = 48/196 (24%), Positives = 64/196 (32%), Gaps = 36/196 (18%)
Query: 1491 SPTSSPGYSPSSPGYSPSSP---GYSPTSPGYSPTSPG-YSPTS------PGYSPTSPTY 1540
SP P SP + G S S + P S G T
Sbjct: 170 SPVEQLPSPPPSPAANECQGRLLGSSAAQAAQDSDSEDEFGPNSFLVKTGSGNLATPAQA 229
Query: 1541 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPT 1599
S S + S +P P SPS+ S + S +Y+ S PS +PT S P
Sbjct: 230 SASPGNFQNHSRLRTPPLPLSHSHSPSHHAASIN-SLNRSNYTQRSNPSPAPTDSSTPPE 288
Query: 1600 SPSYSPTSPAY--------------------SPTSPAYSPTSPAYSPTSPS-YSPTS--- 1635
P + A TSP + TSP Y TS + YSP
Sbjct: 289 GPGSQDSVSAQDNWLLNSNVPLETRHFLFKPGGTSPLFCTTSPGYPLTSSTVYSPPPRPL 348
Query: 1636 PSYSPTSPSYSPTSPS 1651
P + + P++S P
Sbjct: 349 PRNTFSRPAFSLKKPY 364
Score = 31.1 bits (70), Expect = 5.0
Identities = 54/207 (26%), Positives = 73/207 (35%), Gaps = 25/207 (12%)
Query: 1570 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAY-SPTSPAYSPTS------- 1621
P S + +SP SP SP + S A S + + P S
Sbjct: 161 PLHCSSASSSPVEQLPSPPPSPAANECQGRLLGSSAAQAAQDSDSEDEFGPNSFLVKTGS 220
Query: 1622 -PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS-PS 1679
+P S SP ++ S +P P SPS+ + S Y+ S PS
Sbjct: 221 GNLATPAQASASP--GNFQNHSRLRTPPLPLSHSHSPSHH-AASINSLNRSNYTQRSNPS 277
Query: 1680 YSPTSPTYSPTSPSYNPQSAKYSPSLAYS--PSSPR-----LSPASP-YSPTSPNYSPTS 1731
+PT + P P + L S P R SP + TSP Y TS
Sbjct: 278 PAPTDSSTPPEGPGSQDSVSAQDNWLLNSNVPLETRHFLFKPGGTSPLFCTTSPGYPLTS 337
Query: 1732 SS-YSPTS---PSYSPSSPTYSPSSPY 1754
S+ YSP P + S P +S PY
Sbjct: 338 STVYSPPPRPLPRNTFSRPAFSLKKPY 364
>gnl|CDD|181845 PRK09425, prpD, 2-methylcitrate dehydratase; Provisional.
Length = 480
Score = 33.7 bits (78), Expect = 1.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 120 KFKQALKIRNPKNRLKKILDACKNKTKCE 148
KFK L R P + ++ILD C ++ + E
Sbjct: 439 KFKANLATRFPAKQQQRILDLCLDQERLE 467
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 33.4 bits (76), Expect = 1.1
Identities = 30/135 (22%), Positives = 52/135 (38%), Gaps = 12/135 (8%)
Query: 1598 PTSP-SYSPTSPAYSPTSPAYSPTSPAYSPTSPS-----YSPTSPSYSPTSPSYSPTSP- 1650
PT P + +P + A + T+ + T P+ P P + +
Sbjct: 124 PTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTP 183
Query: 1651 -SYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT-SPTYSPTSPSYNPQSAKYSPSLAYS 1708
P +P S +PA + T + + T SP + +P+ ++A SL +
Sbjct: 184 KRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNVGSLKSA 243
Query: 1709 PSSP---RLSPASPY 1720
PSS +LS +S Y
Sbjct: 244 PSSHYTLQLSSSSNY 258
Score = 33.0 bits (75), Expect = 1.4
Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 9/110 (8%)
Query: 1535 PTSP-TYSPSSPGYSPTSPAYSPTSPSYSPTSPS-----YSPTSPSYSPTSPSYSPTSP- 1587
PT P T +P G + A + T+ + T P+ P P + +
Sbjct: 124 PTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTP 183
Query: 1588 -SYSPTSPSYSPTSP-SYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
P +P S +P + S +P + T+ SPA + +P+ +
Sbjct: 184 KRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKT 233
Score = 31.1 bits (70), Expect = 5.9
Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 14/140 (10%)
Query: 1661 PTSPA-YSPTSPGYSPTSPSYSPTSPTYSPTSP--------SYNPQSAKYSPSLAYSPSS 1711
PT PA +P G + + + T+ + T P PQ+ + + +
Sbjct: 124 PTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTP 183
Query: 1712 PRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYS 1771
R PA+P + T + ++ + T+ + + + + ++ A GG + S + +
Sbjct: 184 KRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNVGSLKSA 243
Query: 1772 PSAGYSPSAPGYSPSSTSQY 1791
PS+ Y+ SS+S Y
Sbjct: 244 PSSHYT-----LQLSSSSNY 258
>gnl|CDD|224343 COG1426, COG1426, Predicted transcriptional regulator contains
Xre-like HTH domain [Function unknown].
Length = 284
Score = 33.2 bits (76), Expect = 1.1
Identities = 26/111 (23%), Positives = 39/111 (35%), Gaps = 16/111 (14%)
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS--PTSPSYNPQSAKYSPS 1704
+ S S S S + + +P+ S SP+S T S PT + P A
Sbjct: 140 QSVASVSQNSQDVSLATSSTTPSEGTTSA-----SPSSATTSFTPTVTAIAPVVAP---- 190
Query: 1705 LAYSPSSPRLSPAS--PYSPTSPN--YSPTSSSYSPTSPSYSPSSPTYSPS 1751
P + PA+ S T+P T PT+ S + S +
Sbjct: 191 -TAKPVTVPKQPAADLAASSTAPAAKEMATGQEAVPTAGSGVTTVAGKSAA 240
Score = 30.5 bits (69), Expect = 8.3
Identities = 31/138 (22%), Positives = 44/138 (31%), Gaps = 9/138 (6%)
Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPT-----SPAY 1617
+ S S S S + S T+PS TS S S + S++PT A +P P
Sbjct: 140 QSVASVSQNSQDVSLATSS---TTPSEGTTSASPSSATTSFTPTVTAIAPVVAPTAKPVT 196
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTS 1677
P PA + S +P + T PT+ S T S T
Sbjct: 197 VPKQPAADLAASSTAPAAK-EMATGQEAVPTAGSGVTTVAGKSAALVINFTADCWIEVTD 255
Query: 1678 PSYSPTSPTYSPTSPSYN 1695
+ + S
Sbjct: 256 ANGKVLFSGLTKKGDSLT 273
>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein. The WWbp domain is
characterized by several short PY and PT-like motifs of
the PPPPY form. These appear to bind directly to the WW
domains of WWP1 and WWP2 and other such diverse proteins
as dystrophin and YAP (Yes-associated protein). This is
the WW-domain binding protein WWbp via PY and PY_like
motifs. The presence of a phosphotyrosine residue in the
pWBP-1 peptide abolishes WW domain binding which suggests
a potential regulatory role for tyrosine phosphorylation
in modulating WW domain-ligand interactions. Given the
likelihood that WWP1 and WWP2 function as E3
ubiquitin-protein ligases, it is possible that initial
substrate-specific recognition occurs via WW
domain-substrate protein interaction followed by
ubiquitin transfer and subsequent proteolysis. This
domain lies just downstream of the GRAM (pfam02893) in
many members.
Length = 111
Score = 31.6 bits (72), Expect = 1.2
Identities = 16/74 (21%), Positives = 18/74 (24%), Gaps = 5/74 (6%)
Query: 1475 PVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYS 1534
PV+ G P Y G + P Y P P Y Y P S
Sbjct: 39 PVSRESGYYPPPGAYVHLEPLPAY-----GQYAAPPPYGPPPPYYPAPPGVYPTPPPPNS 93
Query: 1535 PTSPTYSPSSPGYS 1548
P Y
Sbjct: 94 GYMADPQEPPPPYP 107
Score = 30.4 bits (69), Expect = 2.6
Identities = 16/68 (23%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
Query: 1489 AFSPTSSPGYSPSSPGYS---PSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSP 1545
A + GY P Y P +P P Y P PG PT P +
Sbjct: 37 AQPVSRESGYYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYM 96
Query: 1546 GYSPTSPA 1553
P
Sbjct: 97 ADPQEPPP 104
Score = 29.7 bits (67), Expect = 5.4
Identities = 17/69 (24%), Positives = 19/69 (27%), Gaps = 5/69 (7%)
Query: 1502 SPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP-AYSPTSPS 1560
GY P Y P +P P Y P+ PG PT P S
Sbjct: 43 ESGYYPPPGAYVH----LEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYMAD 98
Query: 1561 YSPTSPSYS 1569
P Y
Sbjct: 99 PQEPPPPYP 107
Score = 29.3 bits (66), Expect = 7.3
Identities = 16/75 (21%), Positives = 19/75 (25%), Gaps = 10/75 (13%)
Query: 1600 SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1659
Y P AY P +P P Y P P PT P + +
Sbjct: 43 ESGYYPPPGAYVH----LEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYMAD 98
Query: 1660 SPTSPAYSPTSPGYS 1674
P P Y
Sbjct: 99 PQEPP------PPYP 107
Score = 28.9 bits (65), Expect = 10.0
Identities = 15/66 (22%), Positives = 18/66 (27%), Gaps = 4/66 (6%)
Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1603
GY P AY P +P P Y P P PT P + +
Sbjct: 43 ESGYYPPPGAYVH----LEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYMAD 98
Query: 1604 SPTSPA 1609
P
Sbjct: 99 PQEPPP 104
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences recognised
by sporozoite-neutralising murine monoclonal antibodies.
Length = 727
Score = 33.5 bits (76), Expect = 1.2
Identities = 35/191 (18%), Positives = 56/191 (29%), Gaps = 10/191 (5%)
Query: 1491 SPTSSPGYSPSS-PGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSP--SSPGY 1547
S + PG S SS S + + G S ++ P S + P PG
Sbjct: 139 SKKTQPGVSTSSGSTTSGTDLNTKQSQTGLGA-SGSHAQQDPAVSQSGVVGVPGLGVPGV 197
Query: 1548 SPTSPAYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1604
+ P SP ++ S +
Sbjct: 198 GVPGGGGAGALPGVGVGRAGVSPGVGVGGLGGVPGVGILASNTSREGQTQDDQERDGDGR 257
Query: 1605 PTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS---PSYSPTSPSYSPTSPSYSPTSPSYSP 1661
P ++ + S T PS S T+ S P++P +S + T + S
Sbjct: 258 VIEPGVGLPGVRVGDSTSSPSTTRPSGSTTTTTPASSGPSAPGGPGSSSRNAVTRSTDSI 317
Query: 1662 TSPAYSPTSPG 1672
+ P SP +P
Sbjct: 318 SGPIPSPGAPR 328
Score = 32.3 bits (73), Expect = 3.0
Identities = 41/199 (20%), Positives = 56/199 (28%), Gaps = 23/199 (11%)
Query: 1513 SPTSPGYSPTSPGYSPTS-PGYSPTSPTYSPSSPGYSPT-SPAYSPTSPSYSPTSPSYSP 1570
S G T PG S +S S T S G + S A + S S
Sbjct: 133 SKDGKGSKKTQPGVSTSSGSTTSGTDLNTKQSQTGLGASGSHAQQDPAVSQSGVVGVPGL 192
Query: 1571 TSPSYSPTSPSYSPTSPSYSPTSPSYSP-----TSPSYSPTSPAYSPTS----------- 1614
P + P SP S TS
Sbjct: 193 GVPGVGVPGGGGAGALPGVGVGRAGVSPGVGVGGLGGVPGVGILASNTSREGQTQDDQER 252
Query: 1615 -PAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1673
P ++ S S T PS S T+ + + + PS +P P S +
Sbjct: 253 DGDGRVIEPGVGLPGVRVGDSTSSPSTTRPSGSTTTTTPASSGPS-APGGPGSSSRNAV- 310
Query: 1674 SPTSPSYSPTSPTYSPTSP 1692
T + S + P SP +P
Sbjct: 311 --TRSTDSISGPIPSPGAP 327
>gnl|CDD|215598 PLN03138, PLN03138, Protein TOC75; Provisional.
Length = 796
Score = 33.7 bits (77), Expect = 1.2
Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 3/86 (3%)
Query: 1678 PSYSPTSP--TYSPTSPSYNPQSAKYSP-SLAYSPSSPRLSPASPYSPTSPNYSPTSSSY 1734
S T S + S PQ + +S S + SPR S + S + S TSSS
Sbjct: 1 GRSSSTMVSAAASTSLSSSRPQLSSFSSRSPQSATRSPRASSIKCSASASASSSATSSSA 60
Query: 1735 SPTSPSYSPSSPTYSPSSPYNAGGGN 1760
S + + S GGG
Sbjct: 61 SLVANGAVALLSASAISGGGGGGGGG 86
Score = 32.5 bits (74), Expect = 2.8
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 4/81 (4%)
Query: 1712 PRLSPASPY---SPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSP 1768
R S S + + P SS+S SP + SP + S +A + SS
Sbjct: 1 GRSSSTMVSAAASTSLSSSRPQLSSFSSRSPQSATRSPR-ASSIKCSASASASSSATSSS 59
Query: 1769 QYSPSAGYSPSAPGYSPSSTS 1789
+ G + S
Sbjct: 60 ASLVANGAVALLSASAISGGG 80
>gnl|CDD|223197 COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases
[Amino acid transport and metabolism].
Length = 409
Score = 33.0 bits (76), Expect = 1.4
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 13/80 (16%)
Query: 1188 EDIAPEKISPWLLRIELNREMMVDKKLS-MAAVAEKINQEFDDDLTCIFNDDNADKLILR 1246
E I PE + R +++ K S AV K+ + + +++ DKL R
Sbjct: 306 EPIDPEDVG-------RRRRIVIGGKHSGRKAVKAKLEELGIE-----LDEEELDKLFSR 353
Query: 1247 IRIMNDEAPKGELNDESAED 1266
++ + D+ K E+ D E
Sbjct: 354 VKELADKGKKKEVTDADLEA 373
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of AF4
(Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain. Lilliputian
represents a novel pair-rule gene that acts in
cytoskeleton regulation, segmentation and morphogenesis
in Drosophila.
Length = 1154
Score = 33.4 bits (76), Expect = 1.4
Identities = 30/130 (23%), Positives = 43/130 (33%), Gaps = 5/130 (3%)
Query: 1574 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP 1633
S S S S S S S + SP S +
Sbjct: 773 SSCSPSSSSSHHHSS-SNKESRKSSRNKEEEMLPSPSSPLSSSSPKPEHPSRKRPRRQED 831
Query: 1634 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY---SPTSPSYSPTSPTYSPT 1690
TS S P S S S S S S ++ + T S TS + S +P+ + + P +
Sbjct: 832 TSSSSGPFSAS-STKSSSKSSSTSKHRKTEGKGSSTSKEHKGSSGDTPNKASSFPVPPLS 890
Query: 1691 SPSYNPQSAK 1700
+ S P+ K
Sbjct: 891 NGSSKPRRPK 900
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin
structure and dynamics].
Length = 1163
Score = 33.4 bits (76), Expect = 1.7
Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 7/115 (6%)
Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP---TYSPTSPSYNPQSAKYSPS 1704
+P + S SP Y P+ + S + P S PSY+P+S
Sbjct: 13 DNPGDKVMTGSLKQISPKYHPSMSRDHDVNTSLQNSEPWPDNGSARKPSYSPESMSSYGG 72
Query: 1705 LAYSPSSPRLS----PASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYN 1755
S R S N P++ S ++ + S P P P +
Sbjct: 73 PMDERSGTRRYYEDVEQILSSLAGDNPDPSTDHGSASNQNMERSPPPRIPYRPLD 127
Score = 31.4 bits (71), Expect = 6.3
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 1546 GYSP--TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTS 1600
P +P + S SP Y P+ + S + P + S PSYSP S
Sbjct: 7 PVDPPHDNPGDKVMTGSLKQISPKYHPSMSRDHDVNTSLQNSEPWPDNGSARKPSYSPES 66
Query: 1601 PSYSP 1605
S
Sbjct: 67 MSSYG 71
Score = 31.4 bits (71), Expect = 6.6
Identities = 41/237 (17%), Positives = 67/237 (28%), Gaps = 21/237 (8%)
Query: 1524 PGY----SPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS 1579
GY S P S T +P P SP + +P S+ PT PS S
Sbjct: 193 SGYKIEGSLPQPNGSRLHVT-TPQGPLSSPPVQSSYYVAPCNHDQRTSH-PTLPSDSQPE 250
Query: 1580 PSYSPTSPSYSPTSPS--YSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
PS PS + ++ + + Y +
Sbjct: 251 PSAPSHMPSDARGKHQVDFNQAIIFVNKVKVRFQNNPEMYYDFLDSLRTYQMKQRSIQEV 310
Query: 1638 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQ 1697
Y+ + ++ +P + P S + S + P ++S P
Sbjct: 311 YARVTKLFA-EAPDLLEEFKEFLPDSSVSAEQSTANAQKPSKRLPPIGSFSL------PT 363
Query: 1698 SAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPS--YSPSSPTYSPSS 1752
+A PS SP S + + +S P + P S + S
Sbjct: 364 AAPEQN----RPSLLWESPRSISNISRYRADLLTSFSRNFVPIRIHMPISHLSNESE 416
Score = 31.0 bits (70), Expect = 6.9
Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 1539 TYSP--SSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPSYSPTS 1593
P +PG + + SP Y P+ + S + P + S PSYSP S
Sbjct: 7 PVDPPHDNPGDKVMTGSLKQISPKYHPSMSRDHDVNTSLQNSEPWPDNGSARKPSYSPES 66
Query: 1594 PSYSP 1598
S
Sbjct: 67 MSSYG 71
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model represents one of several closely related clades of
the dihydrolipoamide acetyltransferase subunit of the
pyruvate dehydrogenase complex. It includes sequences
from mitochondria and from alpha and beta branches of the
proteobacteria, as well as from some other bacteria.
Sequences from Gram-positive bacteria are not included.
The non-enzymatic homolog protein X, which serves as an
E3 component binding protein, falls within the clade
phylogenetically but is rejected by its low score [Energy
metabolism, Pyruvate dehydrogenase].
Length = 436
Score = 32.8 bits (75), Expect = 1.8
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 1573 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSP 1619
P S +P+ P++P SP SP S +P S S SP
Sbjct: 98 PKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASP 144
Score = 32.1 bits (73), Expect = 3.2
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 1566 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1612
P S +P+ P++P SP SP S +P S S SP
Sbjct: 98 PKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASP 144
Score = 32.1 bits (73), Expect = 3.2
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 1580 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP 1626
P S +P+ P++P SP SP + +P S S SP
Sbjct: 98 PKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASP 144
Score = 32.1 bits (73), Expect = 3.5
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
S + +P +PT+P P++P SP SP S +P S S SP
Sbjct: 93 SASPAPKPSEIAPTAP---PSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASP 144
Score = 31.7 bits (72), Expect = 3.7
Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 33/114 (28%)
Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSP------------- 1633
P S +P+ P++P SP SP + +P S S SP
Sbjct: 98 PKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDL 157
Query: 1634 -----TSP----------SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1672
+ P S+ P SP+ + + T+P T PA +P S G
Sbjct: 158 SAVAGSGPNGRIVKKDIESFVPQSPASANQ--QAAATTP---ATYPAAAPVSTG 206
Score = 31.7 bits (72), Expect = 4.1
Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 2/65 (3%)
Query: 1492 PTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTS 1551
+ Y S P S +P P++P SP SP + +P S S
Sbjct: 82 ADAFKNYKLESSASPAPKP--SEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDR 139
Query: 1552 PAYSP 1556
SP
Sbjct: 140 IFASP 144
Score = 31.7 bits (72), Expect = 4.2
Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 21/110 (19%)
Query: 1636 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSP------ 1689
P S +P+ P++P SP SP + +P S S SP + +
Sbjct: 98 PKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDL 157
Query: 1690 -----TSP----------SYNPQSAKYSPSLAYSPSSPRLSPASPYSPTS 1724
+ P S+ PQS + A + + A+P S S
Sbjct: 158 SAVAGSGPNGRIVKKDIESFVPQSPASANQQAAATTPATYPAAAPVSTGS 207
Score = 31.7 bits (72), Expect = 4.7
Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
Y S A PS +P+ P++P SP SP S +P S S SP
Sbjct: 87 NYKLESSASPAPKPSE--IAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASP 144
Score = 31.3 bits (71), Expect = 4.9
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 1617 YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSP 1675
Y S A PS +P+ P++P SP SP S +P S S SP
Sbjct: 88 YKLESSASPAPKPSE--IAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASP 144
Score = 31.3 bits (71), Expect = 6.1
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 1600 SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1654
S S +P +PT+P P++P SP SP S +P S S SP
Sbjct: 93 SASPAPKPSEIAPTAP---PSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASP 144
Score = 30.9 bits (70), Expect = 7.0
Identities = 17/47 (36%), Positives = 20/47 (42%)
Query: 1531 PGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1577
P S +PT PS+P SP SP S +P S S SP
Sbjct: 98 PKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASP 144
>gnl|CDD|236652 PRK10118, PRK10118, flagellar hook-length control protein;
Provisional.
Length = 408
Score = 32.9 bits (75), Expect = 1.8
Identities = 27/120 (22%), Positives = 42/120 (35%), Gaps = 9/120 (7%)
Query: 1545 PGYSPTSPAYSPTSPSYSPTSPS----YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
PG T+P S P+ P++P + S TS +
Sbjct: 151 PGQDNTTPVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKG--LTSAQLTTAQ 208
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
P +P +PA P +P + S SP + + SPT + T P + +P S
Sbjct: 209 PDDAPGTPA-QPLTPLAAEAQAKAEVISTP-SPVTAAASPT-ITPHQTQPLPTAAAPVLS 265
Score = 31.4 bits (71), Expect = 4.7
Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 13/119 (10%)
Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYS-PTSPSYSPTSPSYS-----PTSPSYSPTSPA 1609
P + +P + + S P+ PT + P++P + S TS + P
Sbjct: 151 PGQDNTTPVADAPSTVLPAEKPTLLTKDMPSAPQDETHTLSSDEHEKGLTSAQLTTAQPD 210
Query: 1610 YSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
+P +PA P +P + S SP + + SPT T P A +P
Sbjct: 211 DAPGTPA-QPLTPLAAEAQAKAEVISTP-SPVTAAASPT-----ITPHQTQPLPTAAAP 262
>gnl|CDD|222449 pfam13908, Shisa, Wnt and FGF inhibitory regulator. Shisa is a
transcription factor-type molecule that physically
interacts with immature forms of the Wnt receptor
Frizzled and the FGF receptor within the endoplasmic
reticulum to inhibit their post-translational maturation
and trafficking to the cell surface.
Length = 177
Score = 31.7 bits (72), Expect = 1.8
Identities = 16/69 (23%), Positives = 21/69 (30%)
Query: 1556 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1615
P P + + + T+P P S + S P Y P P S Y P
Sbjct: 109 PQRPVMTRATSTTVQTTPLPQPPSTAPSYPGPQYQGYHPMPPQPGMPAPPYSLQYPPPGL 168
Query: 1616 AYSPTSPAY 1624
P Y
Sbjct: 169 LQPQGPPPY 177
Score = 30.9 bits (70), Expect = 3.5
Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 2/69 (2%)
Query: 1675 PTSPSYSPTSPTYSPTSPSYNPQSAKYS-PSLAYSPSSPRLS-PASPYSPTSPNYSPTSS 1732
P P + + T T+P P S S P Y P P P P S Y P
Sbjct: 109 PQRPVMTRATSTTVQTTPLPQPPSTAPSYPGPQYQGYHPMPPQPGMPAPPYSLQYPPPGL 168
Query: 1733 SYSPTSPSY 1741
P Y
Sbjct: 169 LQPQGPPPY 177
Score = 30.2 bits (68), Expect = 6.8
Identities = 16/69 (23%), Positives = 21/69 (30%)
Query: 1563 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSP 1622
P P + + + T+P P S + S P Y P P S Y P
Sbjct: 109 PQRPVMTRATSTTVQTTPLPQPPSTAPSYPGPQYQGYHPMPPQPGMPAPPYSLQYPPPGL 168
Query: 1623 AYSPTSPSY 1631
P Y
Sbjct: 169 LQPQGPPPY 177
>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP). This family
contains bacterial fibronectin-attachment proteins (FAP).
Family members are rich in alanine and proline, are
approximately 300 long, and seem to be restricted to
mycobacteria. These proteins contain a
fibronectin-binding motif that allows mycobacteria to
bind to fibronectin in the extracellular matrix.
Length = 297
Score = 32.6 bits (74), Expect = 1.9
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 1609 AYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
A + PA + PA P PS + +P+ + P P +P P+ P P +P
Sbjct: 28 AVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAP------PAPQPDDPNAAP 81
Query: 1669 TSPGYSPTSPSYSPTSPTYSPTSP 1692
P P +P P P P
Sbjct: 82 PPPPADPNAPPPPPVDPNAPPPPA 105
Score = 32.2 bits (73), Expect = 2.2
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 1594 PSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1653
P+ + P+ P P T+ A + P P+ P P + P + +
Sbjct: 34 PATANADPAPPPPPP---STAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNA 90
Query: 1654 PTSPSYSPTSPAYSPTSPG 1672
P P P +P PG
Sbjct: 91 PPPPPVDPNAPPPPAPEPG 109
Score = 31.0 bits (70), Expect = 5.6
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1660
P+ + PA P P+ + +PA + P P +P P+ P P+ +P P
Sbjct: 34 PATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAP------PAPQPDDPNAAPPPPPAD 87
Query: 1661 PTSPAYSPTSPGYSPTSP 1678
P +P P P P
Sbjct: 88 PNAPPPPPVDPNAPPPPA 105
Score = 31.0 bits (70), Expect = 5.8
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 3/86 (3%)
Query: 1587 PSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS 1646
P+ + P+ P P T+ A + P PA P P + P + +
Sbjct: 34 PATANADPAPPPPPP---STAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNA 90
Query: 1647 PTSPSYSPTSPSYSPTSPAYSPTSPG 1672
P P P +P P + G
Sbjct: 91 PPPPPVDPNAPPPPAPEPGRIDNAVG 116
Score = 30.2 bits (68), Expect = 9.5
Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 1665 AYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTS 1724
A + P + P+ P P+ + +P+ P+ +P + A P P
Sbjct: 28 AVAIALPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPAD 87
Query: 1725 PNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGG 1759
PN P P +P P P NA GG
Sbjct: 88 PNAPP-----PPPVDPNAPPPPAPEPGRIDNAVGG 117
>gnl|CDD|220950 pfam11029, DAZAP2, DAZ associated protein 2 (DAZAP2). DAZ associated
protein 2 has a highly conserved sequence throughout
evolution including a conserved polyproline region and
several SH2/SH3 binding sites. It occurs as a single copy
gene with a four-exon organisation and is located on
chromosome 12. It encodes a ubiquitously expressed
protein and binds to DAZ and DAZL1 through DAZ repeats.
Length = 136
Score = 31.0 bits (70), Expect = 2.1
Identities = 24/106 (22%), Positives = 34/106 (32%), Gaps = 5/106 (4%)
Query: 1589 YSPTSPSYSPT-SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
Y P+YS PSY A P + A P Y P + + S P +Y P
Sbjct: 1 YPDAPPAYSELYQPSYVVPPQAQMPQASAPYPGPSMYLPMAQVMAVGPQSSHPP-MAYYP 59
Query: 1648 T--SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTS 1691
P P + + + T S P P +P +
Sbjct: 60 IGAPPPVYPPGSTV-LVQGGFDAGARFGPGTGSSIPPPPPGCAPNA 104
Score = 29.8 bits (67), Expect = 6.1
Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 1645 YSPTSPSYSPT-SPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP 1703
Y P+YS PSY A P + P Y P + + S +P A Y
Sbjct: 1 YPDAPPAYSELYQPSYVVPPQAQMPQASAPYPGPSMYLPMAQVMAVGPQSSHPPMAYY-- 58
Query: 1704 SLAYSPSSPRLSPASPYSPTS 1724
P +P Y P S
Sbjct: 59 --------PIGAPPPVYPPGS 71
>gnl|CDD|236275 PRK08486, PRK08486, single-stranded DNA-binding protein; Provisional.
Length = 182
Score = 31.7 bits (72), Expect = 2.3
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Query: 1731 SSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSP---SSPQYSPSAGYSPSAPGYSPSS 1787
S S +P + + +S + ++ Y NP P + Y+ +A Y+ P
Sbjct: 107 SKSDNPQANAMQDNSFHENFNNNYPGNYNNPSQDPYMNQAQSYNQNA-YAKENQQAQPPK 165
Query: 1788 TSQYTPQTNRDD 1799
P+ + D+
Sbjct: 166 YENSVPEIDIDE 177
>gnl|CDD|218233 pfam04732, Filament_head, Intermediate filament head (DNA binding)
region. This family represents the N-terminal head
region of intermediate filaments. Intermediate filament
heads bind DNA. Vimentin heads are able to alter nuclear
architecture and chromatin distribution, and the
liberation of heads by HIV-1 protease liberates may play
an important role in HIV-1 associated cytopathogenesis
and carcinogenesis. Phosphorylation of the head region
can affect filament stability. The head has been shown to
interaction with the rod domain of the same protein.
Length = 89
Score = 30.2 bits (68), Expect = 2.4
Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 1707 YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPS 1766
YS SS R + P +S S SS S +S + S + S S S
Sbjct: 1 YSTSSYRRTFGDPTRSSSSRSSGGSSGRSSSSSGFRSRSVSRSSS------------SSP 48
Query: 1767 SPQYSPSAGYSPSAPGYSPSSTS 1789
SP S S+ S SS S
Sbjct: 49 SPSLKSSYRKRSSSAPPSLSSDS 71
Score = 29.8 bits (67), Expect = 2.5
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 1702 SPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNP 1761
S S + SS R S +S + S + S +SS SPS S S S+P + +
Sbjct: 17 SSSRSSGGSSGRSSSSSGFRSRSVSRSSSSSP----SPSLKSSYRKRSSSAPPSLSSDSL 72
Query: 1762 DYSPSS 1767
D+S +
Sbjct: 73 DFSLAD 78
Score = 29.0 bits (65), Expect = 5.5
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 1688 SPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSS 1745
PT S + +S+ S + S S R S S +SP+ S SS +S + S
Sbjct: 12 DPTRSSSS-RSSGGSSGRSSSSSGFRSRSVSRSSSSSPSPSLKSSYRKRSSSAPPSLS 68
>gnl|CDD|221604 pfam12497, ERbeta_N, Estrogen receptor beta. This domain family is
found in eukaryotes, and is approximately 110 amino acids
in length. The family is found in association with
pfam00104, pfam00105. There is a conserved IPS sequence
motif. There are two completely conserved residues (Y and
W) that may be functionally important. ERbeta binds
estrogens with an affinity similar to that of ERalpha,
and activates expression of reporter genes containing
estrogen response elements in an estrogen-dependent
manner. ERbeta acts as a transcription factor once bound
to its ligand and it can dimerise with ERalpha.
Length = 108
Score = 30.4 bits (69), Expect = 2.5
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 1526 YSPTSPGYSPT----SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1581
YSP S SP Y+ S YS P YSP+ SYS S S SP+ + SPS
Sbjct: 5 YSPALGMESQPICIPSP-YTDSGHDYSAL-PFYSPSVLSYSRPSISDSPS--VHQSLSPS 60
Query: 1582 YSPTSPSYSPTSPSYSPTSPSYSPTSP 1608
S + + Y+ P
Sbjct: 61 LFWPSHGHGSPLTLHCQQPLPYAEQPP 87
Score = 30.4 bits (69), Expect = 2.7
Identities = 33/117 (28%), Positives = 40/117 (34%), Gaps = 17/117 (14%)
Query: 1607 SPA-YSPTSPAYSPT----SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1661
SPA YSP S SP Y+ + YS P YSP+ SYS S SPS
Sbjct: 1 SPALYSPALGMESQPICIPSP-YTDSGHDYSAL-PFYSPSVLSYSRPS---ISDSPSVHQ 55
Query: 1662 TSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPAS 1718
SP S + + Y Q SP + P L +S
Sbjct: 56 ------SLSPSLFWPSHGHGSPLTLHCQQPLPYAEQPPH-SPWVEARPLEHVLPTSS 105
Score = 30.0 bits (68), Expect = 3.3
Identities = 24/92 (26%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 1491 SPTSSPGYSP--SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1548
SP S P PS Y+ + YS P YSP+ YS S + SPS +
Sbjct: 1 SPALYSPALGMESQPICIPSP--YTDSGHDYSAL-PFYSPSVLSYSRPSISDSPSV--HQ 55
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1580
SP+ S + + Y+ P
Sbjct: 56 SLSPSLFWPSHGHGSPLTLHCQQPLPYAEQPP 87
Score = 29.3 bits (66), Expect = 7.2
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 1658 SYSPTSPAYSPT----SPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
YSP S SP Y+ + YS P YSP+ SY+ S SPS+ S S
Sbjct: 4 LYSPALGMESQPICIPSP-YTDSGHDYSAL-PFYSPSVLSYSRPSISDSPSVHQSLSPSL 61
Query: 1714 LSPASPYSPTSPNYSPTSSSYSPTSP 1739
P+ + + Y+ P
Sbjct: 62 FWPSHGHGSPLTLHCQQPLPYAEQPP 87
>gnl|CDD|215194 PLN02340, PLN02340, endoglucanase.
Length = 614
Score = 32.5 bits (74), Expect = 2.7
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 15/87 (17%)
Query: 1672 GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTS 1731
+S +Y T PT S +P ++ +L AS + +Y PT
Sbjct: 465 NFSDDRSNYEQTEPTLSGNAP----LVGLFA----------KLQSASETADAYGSYKPTP 510
Query: 1732 SSYSPTSPSYSPSSPTYSPSSPYNAGG 1758
++ SP S +P +S ++ + AGG
Sbjct: 511 NTSSP-KQSGAPVEFVHSITNTWTAGG 536
Score = 31.8 bits (72), Expect = 4.1
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 1525 GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1584
+S Y T PT S ++P + S + + SY PT P+ S S +P
Sbjct: 465 NFSDDRSNYEQTEPTLSGNAPLVGLFAKLQSASET--ADAYGSYKPT-PNTSSPKQSGAP 521
Score = 31.0 bits (70), Expect = 6.8
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 1589 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1647
+S +Y T P+ S +P + S + A SY PT P+ S S +P
Sbjct: 466 FSDDRSNYEQTEPTLSGNAPLVGLFAKLQSASETA--DAYGSYKPT-PNTSSPKQSGAP 521
Score = 31.0 bits (70), Expect = 8.2
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
+S Y T P+ S +P + S + + SY PT P+ S S +P
Sbjct: 465 NFSDDRSNYEQTEPTLSGNAPLVGLFAKLQSASET--ADAYGSYKPT-PNTSSPKQSGAP 521
Query: 1606 TSPAYSPTS 1614
+S T+
Sbjct: 522 VEFVHSITN 530
>gnl|CDD|221321 pfam11928, DUF3446, Domain of unknown function (DUF3446). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 80 to 99 amino acids in length. This domain is
found associated with pfam00096. This domain has a single
completely conserved residue P that may be functionally
important.
Length = 84
Score = 29.8 bits (67), Expect = 2.7
Identities = 21/56 (37%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYSPTSPSYSPTSPSYSP 1598
G S P+ SP+S S S +S S SP S S SP YS P S Y
Sbjct: 29 GMSNPPPSSSPSSSSSSSSSSSQSPPLSCSVHQSEPSPIYSAAPPYSSACGDIYPD 84
Score = 29.8 bits (67), Expect = 2.9
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 1672 GYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYS-PTSPNYSP 1729
G S PS SP+S + S +S S QS S S+ S SP S A PYS Y
Sbjct: 29 GMSNPPPSSSPSSSSSSSSSSS---QSPPLSCSVHQSEPSPIYSAAPPYSSACGDIYPD 84
Score = 29.8 bits (67), Expect = 3.0
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 1560 SYSPTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYSPTSPSYSPTSPAYSP 1612
S PS SP+S S S +S S SP S S SP YS P S Y
Sbjct: 29 GMSNPPPSSSPSSSSSSSSSSSQSPPLSCSVHQSEPSPIYSAAPPYSSACGDIYPD 84
Score = 29.4 bits (66), Expect = 3.0
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 1567 SYSPTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYSPTSPAYSPTSPAYSP 1619
S PS SP+S S S +S S SP S S SP YS P S Y
Sbjct: 29 GMSNPPPSSSPSSSSSSSSSSSQSPPLSCSVHQSEPSPIYSAAPPYSSACGDIYPD 84
Score = 29.4 bits (66), Expect = 3.6
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 1555 SPTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYSPTSPSYSPTSPSYSP 1605
S PS SP+S S S +S S SP S S SP YS P S Y
Sbjct: 31 SNPPPSSSPSSSSSSSSSSSQSPPLSCSVHQSEPSPIYSAAPPYSSACGDIYPD 84
Score = 29.1 bits (65), Expect = 4.7
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYSPTSPSYSPTSPAYSP 1668
S P+ SP+S S S +S S SP S S SP YS P S Y
Sbjct: 31 SNPPPSSSPSSSSSSSSSSSQSPPLSCSVHQSEPSPIYSAAPPYSSACGDIYPD 84
Score = 29.1 bits (65), Expect = 5.2
Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPSYSPTSPAYSPTSPGYSP 1675
S PS SP+S S S +S S SP S S SP YS P S Y
Sbjct: 31 SNPPPSSSPSSSSSSSSSSSQSPPLSCSVHQSEPSPIYSAAPPYSSACGDIYPD 84
Score = 28.3 bits (63), Expect = 8.7
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 1630 SYSPTSPSYSPTSPSYSPTSPSYSPT---SPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
S PS SP+S S S +S S SP S S SP YS P S Y
Sbjct: 29 GMSNPPPSSSPSSSSSSSSSSSQSPPLSCSVHQSEPSPIYSAAPPYSSACGDIYPD 84
>gnl|CDD|217600 pfam03529, TF_Otx, Otx1 transcription factor.
Length = 86
Score = 29.8 bits (67), Expect = 2.8
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 8/91 (8%)
Query: 1663 SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLS--PASPY 1720
SPA SP P + S + + +Y Q+ YS Y SS Y
Sbjct: 1 SPA--SISPLPDPLATSSASCMQRSASYPMTYT-QAPGYSQG--YPGSSSYFGGLDCGSY 55
Query: 1721 -SPTSPNYSPTSSSYSPTSPSYSPSSPTYSP 1750
SP ++ SP + S + SP
Sbjct: 56 LSPMHSQLHAPGAALSPMAASSMGGHLSQSP 86
Score = 29.4 bits (66), Expect = 3.5
Identities = 21/84 (25%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Query: 1559 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT--SPAYSPTSPA 1616
S SP + +S S S SY T S Y +S + SP
Sbjct: 3 ASISPLPDPLATSSASCMQRSASYPMTYTQAPGYSQGYPGSSSYFGGLDCGSYLSPMHSQ 62
Query: 1617 YSPTSPAYSPTSPSYSPTSPSYSP 1640
A SP + S S SP
Sbjct: 63 LHAPGAALSPMAASSMGGHLSQSP 86
>gnl|CDD|219594 pfam07816, DUF1645, Protein of unknown function (DUF1645). These
sequences are derived from a number of hypothetical plant
proteins. The region in question is approximately 270
amino acids long. Some members of this family are
annotated as yeast pheromone receptor proteins AR781 but
no literature was found to support this.
Length = 191
Score = 31.3 bits (71), Expect = 3.0
Identities = 34/168 (20%), Positives = 54/168 (32%), Gaps = 13/168 (7%)
Query: 1650 PSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS--PT-SPSYNPQSAKYSPSLA 1706
P Y +SP SP G + S S +P S S
Sbjct: 12 PLYPLFDGDSVASSP--SPRDRGRVGSPRSESAFAPARLRRALRSLSPERGGGSSDSEST 69
Query: 1707 YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPS 1766
+ P+S +SP S SS + +S + S S+ + G + +
Sbjct: 70 DEGELEGVPPSSYCVSSSPASSSRKSSSTGSSKRWRLSDLLLFRSA--SDGKDAFVFDAA 127
Query: 1767 SPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSS 1814
P YSP + SP + +R+ S +K + K S+
Sbjct: 128 KD---PLLKYSPLSSPASPVKPA---SAKSRESSASKGKRRGKTVASA 169
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 32.1 bits (73), Expect = 3.2
Identities = 16/102 (15%), Positives = 35/102 (34%)
Query: 1694 YNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
Y +SA + S+P+L+ A T+P S + +P + +
Sbjct: 5 YFSKSAVALTLALLTASNPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVA 64
Query: 1754 YNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQT 1795
P S ++ P++ + + + + T T +
Sbjct: 65 ATTAAEAPSSSETAETSDPTSEATDTTTSEARTVTPAATETS 106
>gnl|CDD|178588 PLN03014, PLN03014, carbonic anhydrase.
Length = 347
Score = 32.0 bits (72), Expect = 3.2
Identities = 20/70 (28%), Positives = 29/70 (41%)
Query: 1550 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
T+P S SP+ S S S T P S S S +S S S + P+ P
Sbjct: 3 TAPLSGFFLTSLSPSQSSLQKLSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPV 62
Query: 1610 YSPTSPAYSP 1619
++ +P +P
Sbjct: 63 FAAPAPIIAP 72
Score = 31.2 bits (70), Expect = 5.3
Identities = 18/60 (30%), Positives = 25/60 (41%)
Query: 1567 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSP 1626
S SP+ S S S T P S S S +S S S + P P ++ +P +P
Sbjct: 13 SLSPSQSSLQKLSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPVFAAPAPIIAP 72
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 32.2 bits (73), Expect = 3.4
Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 13/164 (7%)
Query: 1655 TSPSYSPTSPA-YSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPR 1713
+S + T S G S S + +P + + + + ++
Sbjct: 220 SSKGLTSTKELVPVQNSGGNHSLSKSSNSQTPELEYSEKGKDHHHSHNHQHHSIGINNHH 279
Query: 1714 LSPASPYSPT-----------SPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPD 1762
A T P+ S T+ S TS S S ++ + S +A N +
Sbjct: 280 SKHADSKLQTIEVIENHSNKSRPSSSSTNGSKETTSNSSSAAAGSIGSKSSKSAKHSNRN 339
Query: 1763 YSPSSPQ-YSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDD 1805
S SSP+ +S + G PS+ S + +++ +K D
Sbjct: 340 KSNSSPKSHSSANGSVPSSSVSDNESKQKRASKSSSGARDSKKD 383
>gnl|CDD|216194 pfam00922, Phosphoprotein, Vesiculovirus phosphoprotein.
Length = 283
Score = 31.8 bits (72), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1607
+P S TS ++ S S + P + SP+ S S S S P S TS
Sbjct: 169 TPDVSSTSEHIPSSNTSPSTSEPVSTLRSPTPSSKS-SSSLGLPDLSSTS 217
Score = 31.4 bits (71), Expect = 3.8
Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 9/123 (7%)
Query: 1470 NLRLSP---VTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT---SPGYSPTS 1523
L LS +T Q S ++ + SS + S S G +P S TS
Sbjct: 117 TLELSAPEGLTGEQLSQWLSTIKAVMESSKYWRLSECTIMASGDGLIIKERMTPDVSSTS 176
Query: 1524 PGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYS--PTSPS 1581
++ S + P + SP S S + S P S TS + ++ P S S
Sbjct: 177 EHIPSSNTSPSTSEPVSTLRSPTPSSKSSS-SLGLPDLSSTSDWSGMINKEFTLQPKSAS 235
Query: 1582 YSP 1584
P
Sbjct: 236 LPP 238
Score = 31.4 bits (71), Expect = 4.4
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTS------PSYSPTSPSYSPTSPSYS 1597
+P S TS ++ S S + P + SP+ S S P S TS + ++
Sbjct: 169 TPDVSSTSEHIPSSNTSPSTSEPVSTLRSPTPSSKSSSSLGLPDLSSTSDWSGMINKEFT 228
Query: 1598 --PTSPSYSP 1605
P S S P
Sbjct: 229 LQPKSASLPP 238
Score = 31.0 bits (70), Expect = 4.7
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 1614 SPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGY 1673
+P S TS ++ S S + P + SP+ S S S S P S TS + +
Sbjct: 169 TPDVSSTSEHIPSSNTSPSTSEPVSTLRSPTPSSKS-SSSLGLPDLSSTSDWSGMINKEF 227
Query: 1674 S--PTSPSYSP 1682
+ P S S P
Sbjct: 228 TLQPKSASLPP 238
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 32.0 bits (73), Expect = 3.6
Identities = 19/105 (18%), Positives = 48/105 (45%), Gaps = 13/105 (12%)
Query: 1694 YNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSP 1753
+ P +A + + + +PA P +P +P + + + +P+ +P++ +P++P
Sbjct: 364 FKPAAAAEAA-----APAEKKTPARP-EAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAP 417
Query: 1754 YNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRD 1798
P +P +P +P+A +AP +P++ + +
Sbjct: 418 -------PAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQA 455
>gnl|CDD|227370 COG5037, TOS9, Gluconate transport-inducing protein [Signal
transduction mechanisms / Carbohydrate transport and
metabolism].
Length = 248
Score = 31.4 bits (71), Expect = 3.7
Identities = 24/137 (17%), Positives = 37/137 (27%), Gaps = 6/137 (4%)
Query: 1567 SYSPTSPSYS-PTSPSYSPTSPSY-SPTSPSYSPTSPSYSPTSPAY--SPTSPAYSPTSP 1622
S+ P+ S + ++ + + T S + + AY S S P
Sbjct: 88 SFEPSHSKLSKNPLLKSTFSARTAGDRSFIINWDTKSSLNKKTIAYLLDEKSVHVSAYRP 147
Query: 1623 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSP 1682
+ P S S S PS +P+ PSY
Sbjct: 148 SMFPPFSLIKI-KFSNQDDVAK-KAYPNSLSTPFPSERTVTPSKEDIYSRSRLPFPSYQD 205
Query: 1683 TSPTYSPTSPSYNPQSA 1699
SP + P S
Sbjct: 206 LSPEIKNHPLNIIPSSV 222
>gnl|CDD|177556 PHA03195, PHA03195, tegument protein VP11/12; Provisional.
Length = 746
Score = 31.9 bits (72), Expect = 3.9
Identities = 45/187 (24%), Positives = 68/187 (36%), Gaps = 26/187 (13%)
Query: 1629 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYS 1688
PS P P P +P + T P S S P P++ T+P
Sbjct: 430 PSGFPGQFCCPPQGPLPAPPNSKTRGTFRRPRPGSVRGSRQLPASPPSNIVSPRTNPAAE 489
Query: 1689 PTSPSYNPQSAK---YSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYS-PS 1744
++ + N Q A+ S ++ L+ A P+ + + S S+ S + + PS
Sbjct: 490 GSTAAKNGQGAETIQVRSSGEFNDCIWYLNGAYPHQRSDSSSSDNSTCSSTETQYITLPS 549
Query: 1745 SPTYSPSSPYNAGGGNPDYSP-----SSPQYSP--SAGYSPSAPGY-SPSST-------- 1788
+P+ + Y NP P +SPQ S +P P Y P ST
Sbjct: 550 TPSPTGEVVYT----NPLLGPDEEVDASPQPVDPVSDYSAPKNPDYMRPRSTLVEEIWQL 605
Query: 1789 --SQYTP 1793
S YTP
Sbjct: 606 RDSDYTP 612
Score = 31.1 bits (70), Expect = 7.1
Identities = 51/248 (20%), Positives = 73/248 (29%), Gaps = 24/248 (9%)
Query: 1552 PAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYS 1611
P+ P P P +P + T P S S P+ P++ T+PA
Sbjct: 430 PSGFPGQFCCPPQGPLPAPPNSKTRGTFRRPRPGSVRGSRQLPASPPSNIVSPRTNPAAE 489
Query: 1612 PTSPAYSPT--------SPAYSPTSPSY------SPTSPSYSPTSPSYSPTSPSYSPTSP 1657
++ A + S Y S S S + + S T Y
Sbjct: 490 GSTAAKNGQGAETIQVRSSGEFNDCIWYLNGAYPHQRSDSSSSDNSTCSSTETQYITLPS 549
Query: 1658 SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPA 1717
+ SPT T+P P + P P S P++ Y +
Sbjct: 550 TPSPTGEVVY-TNPLLGPDEEVDASPQPV-DPVSDYSAPKNPDYMRPRSTLVEEIWQLRD 607
Query: 1718 SPYSPTSPNYSPTSSSYSP----TSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPS 1773
S Y+P Y S + P + P SP + D P SP SP
Sbjct: 608 SDYTP----YMRPSRAGRPRVRVEDQTLEPGSPKGCYPPANSPENDVKDNLPDSPPISPE 663
Query: 1774 AGYSPSAP 1781
Y P
Sbjct: 664 VVYGTFRP 671
>gnl|CDD|173885 cd08520, PBP2_NikA_DppA_OppA_like_21, The substrate-binding component
of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system contains
the type 2 periplasmic binding fold. This CD represents
the substrate-binding domain of an uncharacterized
ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The DppA
binds dipeptides and some tripeptides and is involved in
chemotaxis toward dipeptides, whereas the OppA binds
peptides of a wide range of lengths (2-35 amino acid
residues) and plays a role in recycling of cell wall
peptides, which precludes any involvement in chemotaxis.
Most of other periplasmic binding proteins are comprised
of only two globular subdomains corresponding to domains
I and III of the dipeptide/oligopeptide binding proteins.
The structural topology of these domains is most similar
to that of the type 2 periplasmic binding proteins
(PBP2), which are responsible for the uptake of a variety
of substrates such as phosphate, sulfate,
polysaccharides, lysine/arginine/ornithine, and
histidine. The PBP2 bind their ligand in the cleft
between these domains in a manner resembling a Venus
flytrap. After binding their specific ligand with high
affinity, they can interact with a cognate membrane
transport complex comprised of two integral membrane
domains and two cytoplasmically located ATPase domains.
This interaction triggers the ligand translocation across
the cytoplasmic membrane energized by ATP hydrolysis.
Besides transport proteins, the PBP2 superfamily includes
the ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 468
Score = 31.9 bits (73), Expect = 4.0
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 1668 PTSPGY-SPTSPSYSPTSPTYSPTSPSYNPQSAK 1700
SPGY P SP Y+P P Y Y+P+ AK
Sbjct: 280 LGSPGYLPPDSPWYNPNVPKY-----PYDPEKAK 308
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 31.6 bits (71), Expect = 4.1
Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 1583 SPTSPSYSPTSPSY-SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
S + + S +PS P + P+ PA P A P +PS SP P S
Sbjct: 166 SKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPS-SPPPPKQSAK 224
Query: 1642 SPSYSP 1647
P P
Sbjct: 225 EPQLPP 230
>gnl|CDD|225766 COG3225, GldG, ABC-type uncharacterized transport system involved in
gliding motility, auxiliary component [Cell motility and
secretion].
Length = 538
Score = 31.7 bits (72), Expect = 4.2
Identities = 20/121 (16%), Positives = 36/121 (29%), Gaps = 3/121 (2%)
Query: 1465 YLFSPNLRLSPVTDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSP 1524
+ + SP+ P G+ + P S G S +P+S P
Sbjct: 323 HPIWLLIPKSPLVRPVDMPLQAGIESLTLAWPSSLELSKGASVEFLPLNPSSDLSGPFDL 382
Query: 1525 GYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP---TSPS 1581
+ T + S + P +P++ SP + + SP + S
Sbjct: 383 PVALTRTISLNANLVPSGKPEELAAKIPGPAPSAFIASPENDQEGKSDRENSPAILVADS 442
Query: 1582 Y 1582
Sbjct: 443 D 443
>gnl|CDD|213995 cd12111, PHP_HisPPase_Thermotoga_like, Polymerase and Histidinol
Phosphatase domain of Thermotoga like. The PHP (also
called histidinol phosphatase-2/HIS2) domain is
associated with several types of DNA polymerases, such
as PolIIIA and family X DNA polymerases, stand alone
histidinol phosphate phosphatases (HisPPases), and a
number of uncharacterized protein families. Thermotoga
PHP is an uncharacterized protein. HisPPase catalyzes
the eighth step of histidine biosynthesis, in which
L-histidinol phosphate undergoes dephosphorylation to
give histidinol. The HisPPase can be classified into two
types: the bifunctional HisPPase found in proteobacteria
that belongs to the DDDD superfamily and the
monofunctional Bacillus subtilis type that is a member
of the PHP family. The PHP domain has four conserved
sequence motifs and contains an invariant histidine that
is involved in metal ion coordination. The PHP domain of
HisPPase is structurally homologous to other members of
the PHP family that have a distorted (beta/alpha)7
barrel fold with a trinuclear metal site on the
C-terminal side of the barrel.
Length = 226
Score = 31.2 bits (71), Expect = 4.2
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 861 DGTVRNSLGDVIQFLYGEDGMDSVWIESQTLDSLKMKKSEFDKAFRFEMDEENWNPNYML 920
DG + SL +V+ LYG+ G D + I +D + F + + E N+
Sbjct: 14 DGAL--SLSEVVD-LYGQHGFDVIAITDHVVDRASLIGK-FPQGTHPGVTEANFE----- 64
Query: 921 QEYIDDLK 928
+Y++ LK
Sbjct: 65 -DYMEALK 71
>gnl|CDD|236733 PRK10672, PRK10672, rare lipoprotein A; Provisional.
Length = 361
Score = 31.6 bits (72), Expect = 4.2
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 4/95 (4%)
Query: 1542 PSSPGYSPTSPAYSPTSPSYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
P+ P S +P+ P S + P+ +P + S +P+
Sbjct: 195 PARPDLS--GGMGTPSVQPAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPG 252
Query: 1601 PSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
+ P + S A + A +P + + S ++
Sbjct: 253 VLEG-SEPTPTAPSSAPATAPAAAAPQAAATSSSA 286
Score = 30.4 bits (69), Expect = 8.3
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 2/94 (2%)
Query: 1535 PTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1594
P P S G PA +P ++ + P+ +P + S +P+
Sbjct: 195 PARPDLS-GGMGTPSVQPAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGV 253
Query: 1595 SYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTS 1628
+ P+ + S A + A +P + A S ++
Sbjct: 254 LEG-SEPTPTAPSSAPATAPAAAAPQAAATSSSA 286
>gnl|CDD|107225 cd06468, p23_CacyBP, p23_like domain found in proteins similar to
Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting
protein (SIP). CacyBP/SIP interacts with S100A6
(calcyclin), with some other members of the S100 family,
with tubulin, and with Siah-1 and Skp-1. The latter two
are components of the ubiquitin ligase that regulates
beta-catenin degradation. The beta-catenin gene is an
oncogene participating in tumorigenesis in many different
cancers. Overexpression of CacyBP/SIP, in part through
its effect on the expression of beta-catenin, inhibits
the proliferation, tumorigenicity, and invasion of
gastric cancer cells. CacyBP/SIP is abundant in neurons
and neuroblastoma NB2a cells. An extensive
re-organization of microtubules accompanies the
differentiation of NB2a cells. CacyBP/SIP may contribute
to NB2a cell differentiation through binding to and
increasing the oligomerization of tubulin. CacyBP/SIP is
also implicated in differentiation of erythroid cells,
rat neonatal cardiomyocytes, in mouse endometrial events,
and in thymocyte development.
Length = 92
Score = 29.5 bits (67), Expect = 4.3
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 1094 HYAGVSAKNVTLGVPRLREIINVAK---KIKTPSLSVFLK 1130
++ KN + RL + I+ K K+KT + + L
Sbjct: 42 KVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLA 81
>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase.
Length = 629
Score = 31.6 bits (72), Expect = 4.5
Identities = 15/113 (13%), Positives = 28/113 (24%), Gaps = 2/113 (1%)
Query: 1702 SPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNP 1761
+ +S + P S + + + + +
Sbjct: 42 HHNGFHSTGRVAVQPVSSPE--FSHVGSARENGTKKTQNQVSEGVDEILKESGLTSSKPS 99
Query: 1762 DYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSS 1814
D SS P S P ++ + +T DK KG K+
Sbjct: 100 DIVISSRSKLKKVFPDPKLNPLPVKPHSVPVPSSDTKNKSTAIDKENKGQKAD 152
>gnl|CDD|218549 pfam05308, Mito_fiss_reg, Mitochondrial fission regulator. In
eukaryotes, this family of proteins induces mitochondrial
fission.
Length = 248
Score = 31.3 bits (71), Expect = 4.7
Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 2/58 (3%)
Query: 1520 SPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1577
+ T+ + +S T P SP P P P P S S
Sbjct: 149 NSTTSDLLSSDESVPSSSTTSFPISPPTEEPVLEVPPPPPPPPP--PPPPSLQQSTSA 204
Score = 30.9 bits (70), Expect = 6.0
Identities = 10/58 (17%), Positives = 15/58 (25%), Gaps = 2/58 (3%)
Query: 1506 SPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSP 1563
+ ++ + +S P SP P P P P S S
Sbjct: 149 NSTTSDLLSSDESVPSSSTTSFPISPPTEEPVLEVPPPPPPPPPPPPP--SLQQSTSA 204
Score = 30.5 bits (69), Expect = 6.9
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 2/58 (3%)
Query: 1597 SPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1654
+ T+ + + +S P SP P P P P S S
Sbjct: 149 NSTTSDLLSSDESVPSSSTTSFPISPPTEEPVLEVPPPPPPPPP--PPPPSLQQSTSA 204
>gnl|CDD|234437 TIGR03998, thiol_BshC, bacillithiol biosynthesis cysteine-adding
enzyme BshC. Members of this protein family are BshC,
an enzyme required for bacillithiol biosynthesis and
described as a cysteine-adding enzyme. Bacillithiol is a
low-molecular-weight thiol, an analog of glutathione and
mycothiol, and is found largely in the Firmicutes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Glutathione and analogs].
Length = 528
Score = 31.5 bits (72), Expect = 4.7
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 787 FVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFF---FHAMGGREGLI-----DTAVK 838
+++ + ++ E ++ +Y T + F H++ GL+ D ++
Sbjct: 171 WLETLFDLLPETEHTNELLELLKRAYRESDTLADAFARLMHSLFADYGLVLLDPDDPELR 230
Query: 839 TSETGYIQRRLVKA 852
E + +R L KA
Sbjct: 231 QLEAPFFKRILEKA 244
>gnl|CDD|218481 pfam05177, RCSD, RCSD region. Proteins contain this region include
C.elegans UNC-89. This region is found repeated in UNC-89
and shows conservation in prolines, lysines and glutamic
acids. Proteins with RCSD are involved in muscle M-line
assembly, but the function of this region RCSD is not
clear.
Length = 101
Score = 29.5 bits (65), Expect = 4.7
Identities = 25/87 (28%), Positives = 29/87 (33%)
Query: 1558 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAY 1617
S S SPS + + T + SP SP P SP SP
Sbjct: 2 VKSPGKKEKSPLRRSPSRTEKTEEDRATEEAKSPEKKEKSPEKVDGKPKSPTKKEKSPEK 61
Query: 1618 SPTSPAYSPTSPSYSPTSPSYSPTSPS 1644
S T SPT SP P SP+
Sbjct: 62 SATEEVKSPTKKEKSPEKVEEKPASPT 88
Score = 29.5 bits (65), Expect = 5.3
Identities = 26/86 (30%), Positives = 29/86 (33%)
Query: 1579 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY 1638
S S SPS + + T A SP SP P SP+ SP
Sbjct: 2 VKSPGKKEKSPLRRSPSRTEKTEEDRATEEAKSPEKKEKSPEKVDGKPKSPTKKEKSPEK 61
Query: 1639 SPTSPSYSPTSPSYSPTSPSYSPTSP 1664
S T SPT SP P SP
Sbjct: 62 SATEEVKSPTKKEKSPEKVEEKPASP 87
Score = 29.5 bits (65), Expect = 5.7
Identities = 26/86 (30%), Positives = 29/86 (33%)
Query: 1586 SPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1645
S S SPS + + T A SP SP P SP+ SP
Sbjct: 2 VKSPGKKEKSPLRRSPSRTEKTEEDRATEEAKSPEKKEKSPEKVDGKPKSPTKKEKSPEK 61
Query: 1646 SPTSPSYSPTSPSYSPTSPAYSPTSP 1671
S T SPT SP P SP
Sbjct: 62 SATEEVKSPTKKEKSPEKVEEKPASP 87
Score = 29.1 bits (64), Expect = 7.8
Identities = 25/87 (28%), Positives = 29/87 (33%)
Query: 1565 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAY 1624
S S SPS + + T + SP SP P SP SP
Sbjct: 2 VKSPGKKEKSPLRRSPSRTEKTEEDRATEEAKSPEKKEKSPEKVDGKPKSPTKKEKSPEK 61
Query: 1625 SPTSPSYSPTSPSYSPTSPSYSPTSPS 1651
S T SPT SP P SP+
Sbjct: 62 SATEEVKSPTKKEKSPEKVEEKPASPT 88
Score = 28.7 bits (63), Expect = 8.2
Identities = 25/87 (28%), Positives = 29/87 (33%)
Query: 1572 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSY 1631
S S SPS + + T + SP SP P SP SP
Sbjct: 2 VKSPGKKEKSPLRRSPSRTEKTEEDRATEEAKSPEKKEKSPEKVDGKPKSPTKKEKSPEK 61
Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPS 1658
S T SPT SP P SP+
Sbjct: 62 SATEEVKSPTKKEKSPEKVEEKPASPT 88
Score = 28.7 bits (63), Expect = 8.8
Identities = 24/87 (27%), Positives = 30/87 (34%)
Query: 1600 SPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1659
S + SP+ + + T + SP SP P SP+ SP
Sbjct: 2 VKSPGKKEKSPLRRSPSRTEKTEEDRATEEAKSPEKKEKSPEKVDGKPKSPTKKEKSPEK 61
Query: 1660 SPTSPAYSPTSPGYSPTSPSYSPTSPT 1686
S T SPT SP P SPT
Sbjct: 62 SATEEVKSPTKKEKSPEKVEEKPASPT 88
>gnl|CDD|220403 pfam09788, Tmemb_55A, Transmembrane protein 55A. Members of this
family catalyze the hydrolysis of the 4-position
phosphate of phosphatidylinositol 4,5-bisphosphate, in
the reaction: 1-phosphatidyl-myo-inositol
4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol
5-phosphate + phosphate.
Length = 258
Score = 31.0 bits (70), Expect = 4.9
Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 1488 MAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGY 1547
M P SP S G + SPG P P+ P Y P S P Y
Sbjct: 1 MDADPERSPLLSEDIDGGTGVSPGDEGAGP---PSKPPYDQNFA---PFPVLLSELPPPY 54
Query: 1548 SPTSPAYSPTSP 1559
SP S ++P
Sbjct: 55 SPAQSPDSGSAP 66
>gnl|CDD|177553 PHA03185, PHA03185, UL14 tegument protein; Provisional.
Length = 214
Score = 30.8 bits (69), Expect = 5.4
Identities = 13/46 (28%), Positives = 18/46 (39%)
Query: 1620 TSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1665
++PA P S + P+ P + PT P PT PA
Sbjct: 156 SAPAVRPGDLSGPGSRPTSGPVAGGLPGGGAPAPPTPPRPGPTDPA 201
Score = 30.0 bits (67), Expect = 9.4
Identities = 13/56 (23%), Positives = 20/56 (35%)
Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSP 1703
++P+ P S + P P + G PT P PT P+ + S
Sbjct: 156 SAPAVRPGDLSGPGSRPTSGPVAGGLPGGGAPAPPTPPRPGPTDPASESDCGRDSR 211
>gnl|CDD|226478 COG3969, COG3969, Predicted phosphoadenosine phosphosulfate
sulfotransferase [General function prediction only].
Length = 407
Score = 31.2 bits (71), Expect = 5.6
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 1157 EATEVWYDPDPMGTIIEEDVEFVKSYYEMPDEDIAPEKISPWLLRIELNREMMV 1210
W P I + F Y M E+ P + WL + ++V
Sbjct: 117 GTEVDWVRQPPEQVAITDPAFFPFYRYGMTFEEFVP-AFAAWLSQKRPATAVLV 169
>gnl|CDD|219929 pfam08604, Nup153, Nucleoporin Nup153-like. This family contains
both the nucleoporin Nup153 from human and Nup153 from
fission yeast. These have been demonstrated to be
functionally equivalent.
Length = 519
Score = 31.2 bits (70), Expect = 5.7
Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 27/175 (15%)
Query: 1632 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPT- 1690
SP P+++ +SP + T S+SP S +PA S SP SP ++ +SP T
Sbjct: 366 SPALPTFTFSSPEDTATF-SHSPI----SKDTPAKSQEVKITSP-SPQFTFSSPIVKSTE 419
Query: 1691 ----SPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSP 1746
PS + + P ++ ++ S P P ++ T S T+ + P
Sbjct: 420 SNVEPPSPSKEFTFSVPVAKFTEATGDKSLVVPKFEFKPTHTATVQS---TNLKDNEPKP 476
Query: 1747 TYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDST 1801
T+ + P+ S +PG+ SS S T + ++
Sbjct: 477 TFGA------------FKPAKTLKEGSVLDLLKSPGFF-SSPSPKREATQKTANS 518
>gnl|CDD|227952 COG5665, NOT5, CCR4-NOT transcriptional regulation complex, NOT5
subunit [Transcription].
Length = 548
Score = 31.2 bits (70), Expect = 6.2
Identities = 32/203 (15%), Positives = 58/203 (28%), Gaps = 8/203 (3%)
Query: 1544 SPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1603
P + Y P+S S + + + S S SP
Sbjct: 183 DPDFIEYDTIYEDMGCEIQPSS-SNNEAPKEGNNQTSLSSIRSSKKQERSPKKKAPQRDV 241
Query: 1604 SPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSY--SPTSPSYSPTSPSYSPTSPSYSP 1661
S + A +P +P S + S ++P+ T S +PT+
Sbjct: 242 SISDRATTPIAPGVESASQSIS-STPTPVSTDTPLHTVKDDSIKFDNSTLGTPTTHVSMK 300
Query: 1662 T--SPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASP 1719
S S + S + + + + Q+ ++ L + +S R P
Sbjct: 301 KKESENDSEQQLNFPKDSTDEIRKTIQHDVETNA-AFQNPLFNDELKWWLASKRYL-TQP 358
Query: 1720 YSPTSPNYSPTSSSYSPTSPSYS 1742
SP+ T + P
Sbjct: 359 LQEMSPSMVSTLENSLLNCPDSL 381
>gnl|CDD|223090 COG0011, COG0011, Uncharacterized conserved protein [Function
unknown].
Length = 100
Score = 29.2 bits (66), Expect = 6.3
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 20/83 (24%)
Query: 1155 VTEATEVW------YDPDPMGTIIE---EDV-EFVKSYYEMPDEDIAPEKISPWLLRIEL 1204
V EA E+ Y PMGT+IE +++ E VK +E E AP + +++I+
Sbjct: 23 VAEAIEILKESGLKYQLGPMGTVIEGELDELMEAVKEAHEAVFEKGAPRVST--VIKIDE 80
Query: 1205 NREMMVDKKLSM----AAVAEKI 1223
R DK+L+M +V EK+
Sbjct: 81 RR----DKELTMEEKVKSVEEKL 99
>gnl|CDD|215361 PLN02673, PLN02673, quinolinate synthetase A.
Length = 724
Score = 31.2 bits (70), Expect = 6.4
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
Query: 1710 SSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYS---PSSPTYSPSSPYNAGGGNPDYSPS 1766
SSP S +S + PN SP + P S +P + + + S +
Sbjct: 3 SSPTSSSSSSFLSLLPNPSPNFRTTHPNFGSQRRIGTINPLFKSFKCIQSPPPDSAPSNA 62
Query: 1767 SPQYSPSAGYSPSAPGYSPSSTSQYTP 1793
SP +S SA +SPS T++ P
Sbjct: 63 SP-------FSCSAVAFSPSQTTELVP 82
>gnl|CDD|165468 PHA03201, PHA03201, uracil DNA glycosylase; Provisional.
Length = 318
Score = 30.6 bits (69), Expect = 6.7
Identities = 26/100 (26%), Positives = 32/100 (32%), Gaps = 14/100 (14%)
Query: 1626 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSP 1685
S S SP P PT P SP +P SP P P + P +P
Sbjct: 4 ARSRSPSPPRRPSPP-----RPTPPRSPDASPEETPPSP---PGPGAEPPPGRAAGPAAP 55
Query: 1686 TYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSP 1725
P P +S S +P P L + T P
Sbjct: 56 RRRPRG---CPAGVTFSSS---APPRPPLGLDDAPAATPP 89
Score = 30.6 bits (69), Expect = 7.4
Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 1489 AFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYS 1548
A S + SP PS P +P P SP SP SP PG P P + P
Sbjct: 4 ARSRSPSPPRRPSPPRPTP------PRSPDASPEETPPSPPGPGAEP--PPGRAAGPAAP 55
Query: 1549 PTSPAYSPTSPSYSPTSPSYSPTSPSYSP 1577
P P ++S ++P P +P
Sbjct: 56 RRRPRGCPAGVTFSSSAPPRPPLGLDDAP 84
Score = 30.6 bits (69), Expect = 8.2
Identities = 25/95 (26%), Positives = 30/95 (31%), Gaps = 9/95 (9%)
Query: 1577 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSP 1636
S S SP P PT P SP +P SP P A P + P +P
Sbjct: 4 ARSRSPSPPRRPSPP-----RPTPPRSPDASPEETPPSP---PGPGAEPPPGRAAGPAAP 55
Query: 1637 SYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSP 1671
P T S +P P + T P
Sbjct: 56 RRRPRGCPAGVTFSSSAPPRPPLGLDDAP-AATPP 89
>gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional.
Length = 545
Score = 30.9 bits (70), Expect = 6.8
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 2/69 (2%)
Query: 1740 SYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYS--PSAGYSPSAPGYSPSSTSQYTPQTNR 1797
S S S + PS+ YN+ G PD S Y Y PGY S N
Sbjct: 7 SSSNGSVSSGPSNNYNSYGPYPDSSNPYGNYQANHQDNYGGFRPGYGNYSGGYGGFGMNS 66
Query: 1798 DDSTTKDDK 1806
S+T +
Sbjct: 67 YGSSTLGKR 75
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein. Genome
duplication is precisely regulated by cyclin-dependent
kinases CDKs, which bring about the onset of S phase by
activating replication origins and then prevent
relicensing of origins until mitosis is completed. The
optimum sequence motif for CDK phosphorylation is
S/T-P-K/R-K/R, and Drc1-Sld2 is found to have at least 11
potential phosphorylation sites. Drc1 is required for DNA
synthesis and S-M replication checkpoint control. Drc1
associates with Cdc2 and is phosphorylated at the onset
of S phase when Cdc2 is activated. Thus Cdc2 promotes DNA
replication by phosphorylating Drc1 and regulating its
association with Cut5. Sld2 and Sld3 represent the
minimal set of S-CDK substrates required for DNA
replication.
Length = 397
Score = 30.9 bits (70), Expect = 6.9
Identities = 27/137 (19%), Positives = 40/137 (29%), Gaps = 16/137 (11%)
Query: 1678 PSYSPTSPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPNY---------- 1727
S +P + SPS SPSS + + PT
Sbjct: 62 HSSPDGESQSTPRKRIPSDVDPYDSPSALRSPSSLK----TELGPTPQRDGKVLSLFDLL 117
Query: 1728 -SPTSSSYSP-TSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSP 1785
S T +P S + S+P P+Y P + +P + G
Sbjct: 118 SSSTPPESTPSKRKLASSVASATPFSTPSKRRETLDAEDEDRPEYGPRSERTPLSSGKKV 177
Query: 1786 SSTSQYTPQTNRDDSTT 1802
+TP + R S T
Sbjct: 178 MLDLFFTPTSWRYSSET 194
>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein). This
family consists of several brain acid soluble protein 1
(BASP1) or neuronal axonal membrane protein NAP-22. The
BASP1 is a neuron enriched Ca(2+)-dependent
calmodulin-binding protein of unknown function.
Length = 233
Score = 30.6 bits (68), Expect = 7.3
Identities = 21/107 (19%), Positives = 41/107 (38%), Gaps = 1/107 (0%)
Query: 1531 PGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1590
P +P S +S + ++ S + + + + S + +
Sbjct: 120 PAAGGEAPKASEASSQPAESAAPAKEEEKSKEEGEAKKTEAPAAAAQETKSDAAPASDSK 179
Query: 1591 PTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPS 1637
P+S +P+S + A S T+ A +P +PA PS +P + S
Sbjct: 180 PSSSEAAPSSKETPAATEAPSSTAKASAPAAPA-EEVKPSEAPAANS 225
>gnl|CDD|219081 pfam06546, Vert_HS_TF, Vertebrate heat shock transcription factor.
This family represents the C-terminal region of
vertebrate heat shock transcription factors. Heat shock
transcription factors regulate the expression of heat
shock proteins - a set of proteins that protect the cell
from damage caused by stress and aid the cell's recovery
after the removal of stress. This C-terminal region is
found with the N-terminal pfam00447, and may contain a
three-stranded coiled-coil trimerisation domain and a CE2
regulatory region, the latter of which is involved in
sustained heat shock response.
Length = 252
Score = 30.4 bits (68), Expect = 7.3
Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 1/81 (1%)
Query: 1542 PSSPGYSPTSPAYSPTSPSYSPTSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1600
SS YSP S A S S SP SP S + S + P S
Sbjct: 3 SSSGSYSPDSVASSGPIISDVTELAESSPVASPDGSIEERAVSSSPLVRIKEEPPSPSQS 62
Query: 1601 PSYSPTSPAYSPTSPAYSPTS 1621
P S P SPT+
Sbjct: 63 PEQSEAVPGSDLVDTPLSPTT 83
>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 226
Score = 30.2 bits (68), Expect = 7.5
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 1/96 (1%)
Query: 1531 PGYSPTSPTYSPSSPGYSPT-SPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1589
P + G + A + S P + P + + + P
Sbjct: 58 PAVVQVVALPTQPPEGVAQEIQDAGDAAAASVDPQPVAQPPVESTPAGVPVAAQTPKPVK 117
Query: 1590 SPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYS 1625
P P +P PA +PT A+
Sbjct: 118 PPKQPPAGAVPAKPTPKPEPKPVAEPAAAPTGQAFV 153
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2) proteins.
Epstein-Barr virus is a human Gammaherpesvirus that
infects and establishes latency in B lymphocytes in vivo.
The latent membrane protein 2 (LMP2) gene is expressed in
latently infected B cells and encodes two protein
isoforms, LMP2A and LMP2B, that are identical except for
an additional N-terminal 119 aa cytoplasmic domain which
is present in the LMP2A isoform. LMP2A is thought to play
a key role in either the establishment or the maintenance
of latency and/or the reactivation of productive
infection from the latent state. The significance of
LMP2B and its role in pathogenesis remain unclear.
Length = 489
Score = 31.0 bits (70), Expect = 7.7
Identities = 20/70 (28%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Query: 1480 QFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPT 1539
+ P G S G S Y PSS G S PG P Y S P +
Sbjct: 5 EMQPLGAGGPRSHGGPDGDEGDSNPYYPSSFGSSWDRPG-PPVPEDYDAPSHRPPPYGGS 63
Query: 1540 YSPSSPGYSP 1549
GY P
Sbjct: 64 NGDRHGGYQP 73
Score = 30.6 bits (69), Expect = 8.3
Identities = 19/88 (21%), Positives = 25/88 (28%), Gaps = 17/88 (19%)
Query: 1714 LSPASPYSPTSPN-YSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPSSPQYSP 1772
L P S P+ S+ Y P+S S P G P Y
Sbjct: 9 LGAGGPRSHGGPDGDEGDSNPYYPSSFGSSWDRP------------GPPVP----EDYDA 52
Query: 1773 SAGYSPSAPGYSPSSTSQYTPQTNRDDS 1800
+ P G + Y P +D S
Sbjct: 53 PSHRPPPYGGSNGDRHGGYQPLGQQDPS 80
Score = 30.6 bits (69), Expect = 10.0
Identities = 24/100 (24%), Positives = 28/100 (28%), Gaps = 15/100 (15%)
Query: 1707 YSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSP-----SSPY------- 1754
Y PSS S P P +Y S P S Y P S Y
Sbjct: 30 YYPSSFGSSWDRPGPPVPEDYDAPSHRPPPYGGSNGDRHGGYQPLGQQDPSLYAGLGQNG 89
Query: 1755 NAGGGNPDYSP---SSPQYSPSAGYSPSAPGYSPSSTSQY 1791
G P YSP S + P + P + Y
Sbjct: 90 GGGLPPPPYSPRDQGSEHVYEEPRDARMVPPWLPVICAPY 129
>gnl|CDD|221526 pfam12316, Dsh_C, Segment polarity protein dishevelled (Dsh) C
terminal. This domain family is found in eukaryotes, and
is typically between 177 and 207 amino acids in length.
The family is found in association with pfam00778,
pfam02377, pfam00610, pfam00595. The segment polarity
gene dishevelled (dsh) is required for pattern formation
of the embryonic segments. It is involved in the
determination of body organisation through the Wingless
pathway (analogous to the Wnt-1 pathway).
Length = 202
Score = 29.9 bits (67), Expect = 8.3
Identities = 30/146 (20%), Positives = 40/146 (27%), Gaps = 3/146 (2%)
Query: 1640 PTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSA 1699
P P Y P P+Y +Y S G S S + S S
Sbjct: 37 QAFPYQYPAPHPYFP--PAYQDPGYSYGSGSAG-SQHSEGSRSSGSNRSDGERSRAADGR 93
Query: 1700 KYSPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGG 1759
+ S S + S + +P+ S P S SS ++ S G
Sbjct: 94 EGGRKSGGSGSESEHTSRSGSRRSGGRRAPSERSGPPPSEGSVRSSLSHPSSHSSYGAPG 153
Query: 1760 NPDYSPSSPQYSPSAGYSPSAPGYSP 1785
P SP PG P
Sbjct: 154 VPPPYNPPMLMMKPPPPSPGPPGAPP 179
>gnl|CDD|219685 pfam07990, NABP, Nucleic acid binding protein NABP. Many members of
this family are putative nucleic acid binding proteins.
One member of this family has been partially
characterized and contains two putative phosphorylation
sites and a possible dimerisation / leucine zipper
domain.
Length = 365
Score = 30.6 bits (69), Expect = 8.3
Identities = 35/215 (16%), Positives = 58/215 (26%), Gaps = 34/215 (15%)
Query: 1546 GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY------SPTSPSYSPT 1599
G+ + S S + +Y S +P S + P + +
Sbjct: 99 GHLSAPEYSQSGNGSGS--KDPINSPHLNYGLGGYSLNPAVASMMANQLGAGNFPPFDNS 156
Query: 1600 SPSYSPTSPAYSPTSPA--YSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP--T 1655
+ + SP S S + S + + + P Y
Sbjct: 157 AAGSAMASPGIDSRSLGGGLSSSGNQGLSDSQNLNRLGNQMGGSGLQSPLMDPMYLQYLR 216
Query: 1656 SPSYSPTSPA----------YSPTSPGYSPT------SPSYSPTSPTYSPTSPSYNPQSA 1699
+ Y+ S A + +S + Y S +P +
Sbjct: 217 AAEYAAQSAAALNDPSMDRNFLGSSYMDLLGLQKAYLGALLAQQKSQYGVPYKSGSPNNH 276
Query: 1700 KYSPSLAYS-----PSSPRLSPASPYSPTSPNYSP 1729
Y + A+ P SP SP P SP P SP
Sbjct: 277 GYYGNPAFGVGMSYPGSPLASPVLPSSPVGP-GSP 310
>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1
family).
Length = 619
Score = 30.6 bits (69), Expect = 8.5
Identities = 26/165 (15%), Positives = 48/165 (29%), Gaps = 10/165 (6%)
Query: 1636 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYN 1695
P S S S S + + + + S +P + +S S + + S + +
Sbjct: 460 PYGSTESSVPSTPSTRRNDRNITSNTPS---LKRTPNLTKSSLSQEASLISKSTGNTHKH 516
Query: 1696 PQSAKY---SPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSS 1752
+ A S SS S + + + + S + SP
Sbjct: 517 STPRRLTTLPKLPAASRSSKGNLIRSGANGNASSDLSSPGSINSKSP-EHSVPLVRVFDI 575
Query: 1753 PYNAGGGNPDYSPSSPQYSP-SAGYSPSAPGYSPSSTSQYTPQTN 1796
A +S P + +P P + TP+ N
Sbjct: 576 HLRASTTKGRHST--PSTNEKKKRLLKRSPLSPPKESVATTPRLN 618
>gnl|CDD|178744 PLN03205, PLN03205, ATR interacting protein; Provisional.
Length = 652
Score = 30.9 bits (69), Expect = 8.7
Identities = 26/103 (25%), Positives = 39/103 (37%), Gaps = 6/103 (5%)
Query: 1624 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPT 1683
Y P P+ P++ P P T+PS T S S + P +S G
Sbjct: 29 YRLLPP---PSLPTFLPAPPVSEMTTPS---TKISSSLSHPMQLQSSAGQKRDQIQVPDP 82
Query: 1684 SPTYSPTSPSYNPQSAKYSPSLAYSPSSPRLSPASPYSPTSPN 1726
+YSP ++ +L +S ++ A P SP S N
Sbjct: 83 FISYSPPRELSQRVVGGFNDALMDYSNSTVVTAAKPISPNSSN 125
>gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase.
Length = 436
Score = 30.7 bits (69), Expect = 8.8
Identities = 26/102 (25%), Positives = 31/102 (30%), Gaps = 31/102 (30%)
Query: 1684 SPTYSPTS---PSYNPQSAKY-----------------SPSLAYSPSSPRLSPASPYSPT 1723
S YSP + P P+S Y S PS RL PA S
Sbjct: 23 SSPYSPKTLKHPRSLPRSINYLFKEQRLLFILVGILIGSTFFILQPSLSRLGPAESTS-- 80
Query: 1724 SPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSP 1765
S S + T SP S + + GGG P
Sbjct: 81 ---LITRSVSIAVT------DSPPSSSTFNSSGGGGRTGRVP 113
>gnl|CDD|236504 PRK09418, PRK09418, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 780
Score = 30.8 bits (69), Expect = 9.0
Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 21/174 (12%)
Query: 1645 YSPTSPSYSPTSP---SYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKY 1701
Y +P P + ++ P T+ SP + Y S PS N + AKY
Sbjct: 590 YMQETPVIDPAADKNWAFKPIVADKLNTTFDSSPNAQKYIKKDGNISYVGPSEN-EFAKY 648
Query: 1702 SPSLAYSPSSPRLSPASPYSPTSPNYSPTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNP 1761
+ + + + +PT+P + +PT+P + +P++P G N
Sbjct: 649 AIDITKKNDDDKETGGE--NPTTPPTGEGDNGENPTTPPTGEGNNGENPTTPPTGEGNN- 705
Query: 1762 DYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSSR 1815
G +P+ P + + + QT D+ +K+ +K R
Sbjct: 706 -------------GGNPTTPSTDEGNNAG-SGQTTTDNQNSKETTTVSENKEER 745
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 30.5 bits (69), Expect = 9.2
Identities = 22/168 (13%), Positives = 48/168 (28%), Gaps = 8/168 (4%)
Query: 1648 TSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPTYSPTSPSYNPQSAKYSPSLAY 1707
+ + + + S S S TS S + Y + Q +
Sbjct: 57 SKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDN 116
Query: 1708 SPSSPRLSPASPYSPTSPNYS-PTSSSYSPTSPSYSPSSPTYSPSSPYNAGGGNPDYSPS 1766
+ + + +Y P +S S + + S + + ++ D + +
Sbjct: 117 YSLTTLIQNLFNLNSDISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSS---KQDKADN 173
Query: 1767 SPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKGDKSS 1814
S + + P S + P ++ +T KSS
Sbjct: 174 QKAPSSNN----TKPSTSNKQPNSPKPTQPNQSNSQPASDDTANQKSS 217
>gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional.
Length = 478
Score = 30.4 bits (68), Expect = 9.6
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 1553 AYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPA 1609
A S ++ S S + S +S S S ++ S+ TS + S S SP + T+
Sbjct: 2 AISASAASSSSSLLLPSSSSSSPSSSTFSFKSTSGKLKSLTLSSSFLSPFSTTTTST 58
>gnl|CDD|219140 pfam06693, DUF1190, Protein of unknown function (DUF1190). This
family consists of several hypothetical Enterobacterial
proteins of around 212 residues in length and is known as
YjfM in Escherichia coli. The function of this family is
unknown.
Length = 163
Score = 29.7 bits (67), Expect = 9.6
Identities = 12/57 (21%), Positives = 14/57 (24%)
Query: 1754 YNAGGGNPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQTNRDDSTTKDDKNTKG 1810
G S P Y + SPS Y +S Y T T
Sbjct: 82 RMLMSGGGGLYASQPLYRSKSSGSPSRGRYRTASGDTYGRSGQGKRKMTVSKTATSP 138
>gnl|CDD|221040 pfam11235, Med25_SD1, Mediator complex subunit 25 synapsin 1. The
overall function of the full-length Med25 is efficiently
to coordinate the transcriptional activation of RAR/RXR
(retinoic acid receptor/retinoic X receptor) in higher
eukaryotic cells. Human Med25 consists of several domains
with different binding properties, the N-terminal, VWA,
domain, this SD1 - synapsin 1 - domain from residues
229-381, a PTOV(B) or ACID domain from 395-545, an SD2
domain from residues 564-645 and a C-terminal NR
box-containing domain (646-650) from 646-747. This The
function of the SD domains is unclear.
Length = 168
Score = 29.8 bits (66), Expect = 9.7
Identities = 25/164 (15%), Positives = 40/164 (24%), Gaps = 1/164 (0%)
Query: 1517 PGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYS-PTSPSYSPTSPSY 1575
P + PG + S P +P +P T P P + S +
Sbjct: 2 PVGGGSVPGPLQSKQPVSLPPAAVLPPQSLPAPQNPLPPVTPPQMQVPQNVSLHAAHDAA 61
Query: 1576 SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTS 1635
+ +P + P +P P P SP+ +
Sbjct: 62 QKAVEAAKNQKQGLKNRFSPITPLQQAPIVGPPFSQAPAPVLPPGPPGAPKPSPASQLSL 121
Query: 1636 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPS 1679
+ +P S +P G P PS
Sbjct: 122 VTTVSPGSGLAPVLTQQQVPPQQPQQPSMVPTPALGGVQPPQPS 165
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
Length = 591
Score = 30.7 bits (69), Expect = 9.8
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
Query: 1528 PTSPGYSPTSPTYSPSSP--GYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1585
+ G S SPS P G +P S + P + + + P PS SP
Sbjct: 6 LPTAGSPLRSHIGSPSKPVVGSTPFSRSRIPAAVDSADETSMAPPPPPS-PLPLLKVSPN 64
Query: 1586 SPSYSP 1591
S Y
Sbjct: 65 SLQYPA 70
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.131 0.388
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 94,302,386
Number of extensions: 9594004
Number of successful extensions: 20306
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13273
Number of HSP's successfully gapped: 1694
Length of query: 1815
Length of database: 10,937,602
Length adjustment: 111
Effective length of query: 1704
Effective length of database: 6,014,308
Effective search space: 10248380832
Effective search space used: 10248380832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (29.4 bits)